# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.6 gi|284163296|ref|YP_003401575.1| - 1.5e-27 95.1 0.1 4.2e-27 93.7 0.1 1.8 1 0 0 1 1 1 1 CDC6, C terminal AAA_16 PF13191.1 gi|284163296|ref|YP_003401575.1| - 2.4e-10 40.7 1.2 1.3e-08 34.9 0.0 3.0 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|284163296|ref|YP_003401575.1| - 1.3e-09 38.3 0.0 0.00085 19.5 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|284163296|ref|YP_003401575.1| - 1.1e-08 35.2 0.0 5.9e-06 26.4 0.0 2.5 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|284163296|ref|YP_003401575.1| - 0.00053 19.1 0.0 0.0012 17.8 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Arch_ATPase PF01637.13 gi|284163296|ref|YP_003401575.1| - 0.00067 19.4 0.2 0.039 13.6 0.0 2.4 2 0 0 2 2 2 1 Archaeal ATPase AAA_17 PF13207.1 gi|284163296|ref|YP_003401575.1| - 0.00069 20.4 0.1 0.003 18.3 0.0 2.1 1 0 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|284163296|ref|YP_003401575.1| - 0.00075 18.4 0.0 0.0013 17.6 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_18 PF13238.1 gi|284163296|ref|YP_003401575.1| - 0.0021 18.3 0.9 0.017 15.4 0.0 2.6 3 0 0 3 3 2 1 AAA domain DUF815 PF05673.8 gi|284163296|ref|YP_003401575.1| - 0.003 16.5 0.0 0.0072 15.2 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF815) Sigma54_activat PF00158.21 gi|284163296|ref|YP_003401575.1| - 0.0031 17.0 0.0 0.0067 15.9 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_2 PF07724.9 gi|284163296|ref|YP_003401575.1| - 0.0039 17.1 0.1 2.9 7.7 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) DEAD PF00270.24 gi|284163296|ref|YP_003401575.1| - 0.013 15.0 0.4 3.5 7.1 0.0 2.8 3 0 0 3 3 3 0 DEAD/DEAH box helicase ABC_tran PF00005.22 gi|284163296|ref|YP_003401575.1| - 0.021 15.0 0.0 0.069 13.4 0.0 1.8 1 0 0 1 1 1 0 ABC transporter AAA_32 PF13654.1 gi|284163296|ref|YP_003401575.1| - 0.026 13.2 0.3 0.71 8.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|284163296|ref|YP_003401575.1| - 0.032 13.1 0.0 0.052 12.3 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_24 PF13479.1 gi|284163296|ref|YP_003401575.1| - 0.04 13.4 0.1 0.076 12.5 0.1 1.4 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|284163296|ref|YP_003401575.1| - 0.11 12.7 0.0 0.22 11.7 0.0 1.5 1 0 0 1 1 1 0 RNA helicase DUF2075 PF09848.4 gi|284163296|ref|YP_003401575.1| - 0.11 11.4 0.0 0.18 10.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Sigma54_activ_2 PF14532.1 gi|284163296|ref|YP_003401575.1| - 0.14 12.2 0.0 0.28 11.2 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain FtsK_SpoIIIE PF01580.13 gi|284163296|ref|YP_003401575.1| - 0.25 10.7 1.3 0.58 9.5 0.0 2.2 3 0 0 3 3 3 0 FtsK/SpoIIIE family TAT_signal PF10518.4 gi|284163297|ref|YP_003401576.1| - 0.012 15.5 1.7 0.017 15.0 1.2 1.2 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF2396 PF09654.5 gi|284163297|ref|YP_003401576.1| - 0.064 13.2 0.0 0.085 12.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2396) Peptidase_S24 PF00717.18 gi|284163298|ref|YP_003401577.1| - 1.9e-06 27.4 0.2 6.6e-06 25.6 0.2 1.9 1 1 0 1 1 1 1 Peptidase S24-like DNA_pol_E_B PF04042.11 gi|284163299|ref|YP_003401578.1| - 1.1e-15 57.4 0.0 1.9e-15 56.6 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos_2 PF12850.2 gi|284163299|ref|YP_003401578.1| - 5.6e-14 52.2 0.8 2.1e-13 50.4 0.5 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|284163299|ref|YP_003401578.1| - 1.8e-07 30.7 2.4 2.5e-07 30.3 0.9 1.8 2 1 0 2 2 2 1 Calcineurin-like phosphoesterase MaoC_dehydratas PF01575.14 gi|284163300|ref|YP_003401579.1| - 5.6e-07 28.9 0.1 2.3e-06 27.0 0.1 1.9 1 1 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|284163300|ref|YP_003401579.1| - 0.00066 19.4 0.1 0.011 15.5 0.1 2.1 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase Amidohydro_2 PF04909.9 gi|284163301|ref|YP_003401580.1| - 4e-32 111.8 0.8 4.8e-32 111.6 0.5 1.1 1 0 0 1 1 1 1 Amidohydrolase MaoC_dehydratas PF01575.14 gi|284163302|ref|YP_003401581.1| - 9e-23 79.9 0.1 1.2e-22 79.6 0.1 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|284163302|ref|YP_003401581.1| - 0.0018 18.0 0.2 0.0076 16.0 0.1 1.8 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase OB_RNB PF08206.6 gi|284163302|ref|YP_003401581.1| - 0.13 11.8 0.1 0.24 10.9 0.0 1.4 1 0 0 1 1 1 0 Ribonuclease B OB domain Carboxyl_trans PF01039.17 gi|284163303|ref|YP_003401582.1| - 2.9e-131 438.2 0.0 4e-131 437.7 0.0 1.1 1 0 0 1 1 1 1 Carboxyl transferase domain Acyl-CoA_dh_1 PF00441.19 gi|284163305|ref|YP_003401584.1| - 1.7e-31 109.3 1.0 3.2e-31 108.4 0.7 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|284163305|ref|YP_003401584.1| - 7.9e-24 84.4 3.6 1.9e-23 83.1 2.5 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|284163305|ref|YP_003401584.1| - 7.2e-18 63.8 1.4 9.4e-18 63.4 0.2 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|284163305|ref|YP_003401584.1| - 5.7e-17 62.2 1.7 1.1e-16 61.2 1.2 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain AMP-binding PF00501.23 gi|284163306|ref|YP_003401585.1| - 2.1e-93 313.0 0.1 2.5e-93 312.7 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|284163306|ref|YP_003401585.1| - 3.3e-19 69.6 4.0 2.2e-18 66.9 0.9 2.7 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain Robl_LC7 PF03259.12 gi|284163306|ref|YP_003401585.1| - 0.024 14.1 0.1 0.058 12.9 0.1 1.6 1 0 0 1 1 1 0 Roadblock/LC7 domain TetR_C_6 PF13977.1 gi|284163307|ref|YP_003401586.1| - 4.8e-13 49.1 2.5 4.8e-13 49.1 1.7 1.7 2 0 0 2 2 2 1 Bacterial transcriptional repressor TetR_N PF00440.18 gi|284163307|ref|YP_003401586.1| - 1.5e-06 27.6 0.0 2.5e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family ABC_tran PF00005.22 gi|284163308|ref|YP_003401587.1| - 8.9e-30 103.7 0.0 1.4e-29 103.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284163308|ref|YP_003401587.1| - 8.1e-16 58.8 0.0 1.3e-10 41.7 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|284163308|ref|YP_003401587.1| - 1.9e-05 24.7 0.0 5.1e-05 23.3 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain DUF4162 PF13732.1 gi|284163308|ref|YP_003401587.1| - 8.6e-05 22.9 0.0 0.0002 21.8 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_29 PF13555.1 gi|284163308|ref|YP_003401587.1| - 0.0065 15.9 0.2 0.014 14.8 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.24 gi|284163308|ref|YP_003401587.1| - 0.024 14.8 0.2 0.25 11.5 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.17 gi|284163308|ref|YP_003401587.1| - 0.029 13.7 0.3 0.054 12.9 0.2 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain SbcCD_C PF13558.1 gi|284163308|ref|YP_003401587.1| - 0.039 13.8 0.0 0.13 12.1 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.1 gi|284163308|ref|YP_003401587.1| - 0.063 13.6 0.0 0.091 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|284163308|ref|YP_003401587.1| - 0.065 13.1 0.2 0.22 11.4 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|284163308|ref|YP_003401587.1| - 0.066 12.2 0.0 0.87 8.5 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain ABC2_membrane PF01061.19 gi|284163309|ref|YP_003401588.1| - 3.8e-32 111.1 11.9 6e-32 110.5 8.2 1.3 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|284163309|ref|YP_003401588.1| - 2.4e-15 56.4 13.3 2.4e-15 56.4 9.2 1.2 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|284163309|ref|YP_003401588.1| - 0.00013 21.2 16.9 0.00018 20.7 11.7 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein DUF4427 PF14468.1 gi|284163310|ref|YP_003401589.1| - 0.16 11.6 0.0 0.26 11.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4427) AA_kinase PF00696.23 gi|284163311|ref|YP_003401590.1| - 3.9e-46 157.5 3.0 7.2e-46 156.6 1.3 1.8 2 0 0 2 2 2 1 Amino acid kinase family ACT_7 PF13840.1 gi|284163311|ref|YP_003401590.1| - 2.9e-15 55.5 0.0 2.4e-07 30.1 0.0 2.7 2 0 0 2 2 2 2 ACT domain ACT PF01842.20 gi|284163311|ref|YP_003401590.1| - 3e-10 39.3 4.0 0.00052 19.4 0.1 3.6 3 0 0 3 3 3 2 ACT domain ACT_6 PF13740.1 gi|284163311|ref|YP_003401590.1| - 0.0016 18.1 0.1 1.5 8.5 0.0 2.8 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.1 gi|284163311|ref|YP_003401590.1| - 0.021 15.1 0.1 3.6 8.0 0.0 2.6 2 0 0 2 2 2 0 ACT domain TctC PF03401.9 gi|284163311|ref|YP_003401590.1| - 0.035 13.0 0.0 0.058 12.3 0.0 1.2 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter family receptor AP_endonuc_2 PF01261.19 gi|284163311|ref|YP_003401590.1| - 0.042 13.1 0.0 0.13 11.5 0.0 1.8 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel Beta_elim_lyase PF01212.16 gi|284163313|ref|YP_003401592.1| - 7.3e-72 241.9 0.0 1.9e-71 240.5 0.0 1.6 1 1 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|284163313|ref|YP_003401592.1| - 0.052 12.5 0.3 4.3 6.2 0.0 2.2 2 0 0 2 2 2 0 DegT/DnrJ/EryC1/StrS aminotransferase family Acetyltransf_10 PF13673.1 gi|284163315|ref|YP_003401594.1| - 2.1e-10 40.7 0.2 5.2e-10 39.4 0.1 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|284163315|ref|YP_003401594.1| - 1.7e-08 34.3 2.9 1.1e-07 31.7 2.0 2.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|284163315|ref|YP_003401594.1| - 2e-07 31.0 0.0 6.5e-07 29.4 0.0 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|284163315|ref|YP_003401594.1| - 0.0015 18.3 0.3 0.0054 16.5 0.2 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|284163315|ref|YP_003401594.1| - 0.065 12.9 0.5 0.38 10.5 0.4 2.0 1 1 0 1 1 1 0 FR47-like protein Acetyltransf_CG PF14542.1 gi|284163315|ref|YP_003401594.1| - 0.14 12.0 0.1 0.27 11.1 0.1 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase AhpC-TSA PF00578.16 gi|284163316|ref|YP_003401595.1| - 3.7e-15 55.7 0.0 4.7e-15 55.3 0.0 1.3 1 1 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|284163316|ref|YP_003401595.1| - 2.5e-07 30.3 0.0 2.7e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|284163316|ref|YP_003401595.1| - 0.00011 22.1 0.0 0.00013 21.8 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme HTH_10 PF04967.7 gi|284163317|ref|YP_003401596.1| - 1.3e-15 56.7 0.0 2.4e-15 55.8 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_AsnC-type PF13404.1 gi|284163317|ref|YP_003401596.1| - 0.0016 17.9 0.4 0.0037 16.7 0.2 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|284163317|ref|YP_003401596.1| - 0.0048 16.2 0.0 0.0081 15.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|284163317|ref|YP_003401596.1| - 0.013 15.1 0.0 0.027 14.0 0.0 1.6 1 0 0 1 1 1 0 HTH domain Sigma70_r4_2 PF08281.7 gi|284163317|ref|YP_003401596.1| - 0.089 12.2 0.1 0.37 10.2 0.0 2.0 1 1 0 1 1 1 0 Sigma-70, region 4 HILPDA PF15220.1 gi|284163317|ref|YP_003401596.1| - 0.1 12.6 0.1 0.21 11.6 0.1 1.5 1 0 0 1 1 1 0 Hypoxia-inducible lipid droplet-associated Sigma70_r4 PF04545.11 gi|284163317|ref|YP_003401596.1| - 0.16 11.3 1.1 0.22 10.8 0.1 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 Ring_hydroxyl_A PF00848.14 gi|284163318|ref|YP_003401597.1| - 7.7e-12 45.2 0.1 8.2e-12 45.2 0.1 1.0 1 0 0 1 1 1 1 Ring hydroxylating alpha subunit (catalytic domain) DAO PF01266.19 gi|284163319|ref|YP_003401598.1| - 5.9e-58 196.4 0.1 6.7e-58 196.2 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|284163319|ref|YP_003401598.1| - 3.2e-05 22.5 1.0 0.0054 15.2 0.1 2.1 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_2 PF07992.9 gi|284163319|ref|YP_003401598.1| - 3.5e-05 23.7 0.0 0.098 12.5 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|284163319|ref|YP_003401598.1| - 0.00046 20.3 0.7 0.0071 16.4 0.5 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|284163319|ref|YP_003401598.1| - 0.01 15.2 0.1 0.02 14.3 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA FAD_binding_3 PF01494.14 gi|284163319|ref|YP_003401598.1| - 0.016 14.2 0.3 0.03 13.3 0.2 1.4 1 0 0 1 1 1 0 FAD binding domain 3HCDH_N PF02737.13 gi|284163319|ref|YP_003401598.1| - 0.029 14.0 0.2 0.055 13.1 0.1 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|284163319|ref|YP_003401598.1| - 0.07 12.9 0.1 0.12 12.2 0.1 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase ThiF PF00899.16 gi|284163319|ref|YP_003401598.1| - 0.11 12.3 0.2 0.19 11.5 0.1 1.3 1 0 0 1 1 1 0 ThiF family Amino_oxidase PF01593.19 gi|284163319|ref|YP_003401598.1| - 0.12 11.4 0.3 0.26 10.3 0.0 1.8 2 1 0 2 2 2 0 Flavin containing amine oxidoreductase NAD_Gly3P_dh_N PF01210.18 gi|284163319|ref|YP_003401598.1| - 0.19 11.4 0.1 0.64 9.7 0.1 1.9 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DUF3945 PF13101.1 gi|284163320|ref|YP_003401599.1| - 0.09 12.0 0.0 0.12 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3945) DUF342 PF03961.8 gi|284163321|ref|YP_003401600.1| - 0.0011 17.4 9.9 0.0017 16.8 6.9 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF342) Rep_fac_C PF08542.6 gi|284163322|ref|YP_003401601.1| - 5.5e-21 74.3 0.0 1.3e-20 73.1 0.0 1.7 2 0 0 2 2 1 1 Replication factor C C-terminal domain AAA PF00004.24 gi|284163322|ref|YP_003401601.1| - 1.8e-18 66.9 0.0 1.8e-16 60.5 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|284163322|ref|YP_003401601.1| - 1.3e-14 54.1 0.0 5.7e-12 45.5 0.0 2.1 1 1 1 2 2 2 2 DNA polymerase III, delta subunit Rad17 PF03215.10 gi|284163322|ref|YP_003401601.1| - 6.8e-09 34.9 0.0 7.5e-06 24.8 0.0 2.1 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein AAA_14 PF13173.1 gi|284163322|ref|YP_003401601.1| - 6.1e-07 29.3 0.0 2.5e-06 27.3 0.0 1.9 1 1 1 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|284163322|ref|YP_003401601.1| - 8.8e-06 25.8 0.3 0.025 14.7 0.0 2.4 1 1 1 2 2 2 2 AAA domain RuvB_N PF05496.7 gi|284163322|ref|YP_003401601.1| - 7.1e-05 21.9 0.0 0.00041 19.4 0.0 2.3 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus DNA_pol3_delta PF06144.8 gi|284163322|ref|YP_003401601.1| - 0.00015 21.3 0.0 0.00027 20.4 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_16 PF13191.1 gi|284163322|ref|YP_003401601.1| - 0.00022 21.2 1.7 0.6 10.0 0.0 3.1 2 2 1 3 3 3 2 AAA ATPase domain TIP49 PF06068.8 gi|284163322|ref|YP_003401601.1| - 0.00024 19.9 0.0 0.011 14.4 0.0 2.5 1 1 0 2 2 2 1 TIP49 C-terminus AAA_19 PF13245.1 gi|284163322|ref|YP_003401601.1| - 0.00043 19.9 0.0 0.0012 18.5 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain IstB_IS21 PF01695.12 gi|284163322|ref|YP_003401601.1| - 0.00053 19.4 0.0 0.0016 17.8 0.0 1.8 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_25 PF13481.1 gi|284163322|ref|YP_003401601.1| - 0.0031 16.9 0.3 0.012 14.9 0.0 2.1 1 1 1 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|284163322|ref|YP_003401601.1| - 0.0035 17.6 0.0 0.027 14.7 0.0 2.4 2 1 0 2 2 2 1 AAA domain Mg_chelatase PF01078.16 gi|284163322|ref|YP_003401601.1| - 0.0056 15.8 0.0 1 8.4 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI PhoH PF02562.11 gi|284163322|ref|YP_003401601.1| - 0.0066 15.7 0.0 0.23 10.6 0.0 2.3 2 0 0 2 2 2 1 PhoH-like protein AAA_17 PF13207.1 gi|284163322|ref|YP_003401601.1| - 0.0069 17.2 1.0 0.015 16.0 0.2 2.4 2 1 0 2 2 1 1 AAA domain AAA_3 PF07726.6 gi|284163322|ref|YP_003401601.1| - 0.0076 15.8 0.0 0.033 13.7 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|284163322|ref|YP_003401601.1| - 0.0087 15.7 0.1 0.13 11.9 0.0 2.7 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|284163322|ref|YP_003401601.1| - 0.017 14.6 0.0 0.81 9.1 0.0 2.4 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_11 PF13086.1 gi|284163322|ref|YP_003401601.1| - 0.028 14.0 0.0 0.034 13.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.13 gi|284163322|ref|YP_003401601.1| - 0.037 13.5 0.0 0.059 12.8 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Sigma54_activ_2 PF14532.1 gi|284163322|ref|YP_003401601.1| - 0.046 13.7 0.0 0.16 12.0 0.0 1.8 1 1 0 1 1 1 0 Sigma-54 interaction domain DUF3400 PF11880.3 gi|284163322|ref|YP_003401601.1| - 0.051 12.8 0.0 0.16 11.1 0.0 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF3400) ResIII PF04851.10 gi|284163322|ref|YP_003401601.1| - 0.051 13.3 0.0 0.13 12.0 0.0 1.6 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit MobB PF03205.9 gi|284163322|ref|YP_003401601.1| - 0.055 13.1 0.0 0.2 11.3 0.0 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B DEAD PF00270.24 gi|284163322|ref|YP_003401601.1| - 0.058 12.8 0.9 12 5.3 0.0 2.7 2 1 0 3 3 3 0 DEAD/DEAH box helicase SNF2_N PF00176.18 gi|284163322|ref|YP_003401601.1| - 0.085 11.6 0.0 0.32 9.7 0.0 1.7 2 0 0 2 2 2 0 SNF2 family N-terminal domain AAA_33 PF13671.1 gi|284163322|ref|YP_003401601.1| - 0.14 11.9 0.3 0.78 9.6 0.1 2.0 2 1 0 2 2 2 0 AAA domain GAF_2 PF13185.1 gi|284163323|ref|YP_003401602.1| - 2.4e-08 34.5 0.6 2.4e-08 34.5 0.4 2.8 2 1 0 2 2 2 1 GAF domain GAF_3 PF13492.1 gi|284163323|ref|YP_003401602.1| - 5.2e-06 26.5 1.6 5e-05 23.4 0.1 3.0 3 0 0 3 3 3 1 GAF domain HisKA PF00512.20 gi|284163323|ref|YP_003401602.1| - 0.00022 21.1 0.8 0.00022 21.1 0.5 3.2 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain DUF2930 PF11152.3 gi|284163323|ref|YP_003401602.1| - 0.013 14.6 0.0 0.035 13.2 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2930) FlgN PF05130.7 gi|284163323|ref|YP_003401602.1| - 0.26 11.5 6.7 0.19 11.9 1.0 2.9 2 0 0 2 2 2 0 FlgN protein Asparaginase PF00710.15 gi|284163324|ref|YP_003401603.1| - 8.1e-79 264.7 1.1 9.1e-79 264.5 0.8 1.0 1 0 0 1 1 1 1 Asparaginase EIIBC-GUT_C PF07663.6 gi|284163324|ref|YP_003401603.1| - 0.0099 15.9 0.2 0.043 13.9 0.0 2.1 2 0 0 2 2 2 1 Sorbitol phosphotransferase enzyme II C-terminus DUF2478 PF10649.4 gi|284163324|ref|YP_003401603.1| - 0.076 12.3 0.3 0.2 11.0 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2478) Polysacc_deac_1 PF01522.16 gi|284163325|ref|YP_003401604.1| - 4e-21 74.9 0.0 6.4e-21 74.2 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF2148 PF09918.4 gi|284163326|ref|YP_003401605.1| - 0.088 12.5 0.5 0.2 11.3 0.3 1.6 1 0 0 1 1 1 0 Uncharacterized protein containing a ferredoxin domain (DUF2148) TAT_signal PF10518.4 gi|284163327|ref|YP_003401606.1| - 0.071 13.1 5.1 0.21 11.6 3.6 1.8 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence tRNA-synt_2c PF01411.14 gi|284163328|ref|YP_003401607.1| - 1.9e-113 379.6 0.0 2.4e-113 379.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|284163328|ref|YP_003401607.1| - 6.2e-13 48.4 0.6 1.6e-12 47.0 0.4 1.8 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.14 gi|284163328|ref|YP_003401607.1| - 2.9e-09 36.5 2.9 2.9e-09 36.5 2.0 2.7 2 0 0 2 2 2 1 DHHA1 domain DUF1319 PF07028.6 gi|284163328|ref|YP_003401607.1| - 0.56 10.4 2.3 0.81 9.8 0.0 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF1319) VWA_2 PF13519.1 gi|284163331|ref|YP_003401610.1| - 1.1e-27 97.1 0.0 1.1e-27 97.1 0.0 3.0 4 0 0 4 4 4 1 von Willebrand factor type A domain VWA PF00092.23 gi|284163331|ref|YP_003401610.1| - 8.5e-22 77.7 0.0 2.4e-21 76.2 0.0 1.8 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.1 gi|284163331|ref|YP_003401610.1| - 2.1e-07 30.7 0.0 6.3e-07 29.2 0.0 1.9 1 0 0 1 1 1 1 von Willebrand factor type A domain Abhydrolase_6 PF12697.2 gi|284163332|ref|YP_003401611.1| - 4.6e-32 111.7 8.7 5.3e-32 111.5 6.0 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|284163332|ref|YP_003401611.1| - 1.8e-18 66.9 0.0 3.5e-09 36.5 0.0 2.0 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|284163332|ref|YP_003401611.1| - 2.7e-16 59.6 0.0 6.9e-16 58.3 0.0 1.6 1 1 0 1 1 1 1 Alpha/beta hydrolase family DUF2267 PF10025.4 gi|284163332|ref|YP_003401611.1| - 0.057 13.4 0.3 0.1 12.6 0.2 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2267) 3-alpha PF03475.9 gi|284163332|ref|YP_003401611.1| - 0.11 12.2 0.4 0.23 11.2 0.3 1.5 1 0 0 1 1 1 0 3-alpha domain Na_H_Exchanger PF00999.16 gi|284163333|ref|YP_003401612.1| - 2.1e-48 164.7 54.7 3.1e-48 164.2 37.9 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Usp PF00582.21 gi|284163333|ref|YP_003401612.1| - 6.5e-16 58.7 3.2 1.4e-15 57.7 0.9 2.1 2 0 0 2 2 2 1 Universal stress protein family DUF2270 PF10028.4 gi|284163334|ref|YP_003401613.1| - 2.8e-62 209.4 0.6 3.3e-62 209.2 0.5 1.0 1 0 0 1 1 1 1 Predicted integral membrane protein (DUF2270) UbiA PF01040.13 gi|284163334|ref|YP_003401613.1| - 0.016 14.4 1.0 0.51 9.5 0.1 2.0 2 0 0 2 2 2 0 UbiA prenyltransferase family Acyl_transf_3 PF01757.17 gi|284163334|ref|YP_003401613.1| - 0.11 11.2 6.1 0.049 12.4 0.4 2.2 2 1 0 2 2 2 0 Acyltransferase family DUF2371 PF10177.4 gi|284163334|ref|YP_003401613.1| - 0.15 11.9 0.1 3.6 7.4 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised conserved protein (DUF2371) AMP-binding PF00501.23 gi|284163335|ref|YP_003401614.1| - 5.7e-35 120.5 0.5 4.2e-34 117.6 0.4 1.9 1 1 0 1 1 1 1 AMP-binding enzyme GATase PF00117.23 gi|284163336|ref|YP_003401615.1| - 7.4e-23 81.0 0.0 1.1e-22 80.4 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|284163336|ref|YP_003401615.1| - 6.6e-06 25.7 0.1 0.00044 19.7 0.1 2.5 1 1 0 1 1 1 1 Peptidase C26 HTS PF04204.11 gi|284163336|ref|YP_003401615.1| - 0.0014 17.4 0.3 0.024 13.3 0.2 2.6 1 1 0 1 1 1 1 Homoserine O-succinyltransferase GATase_3 PF07685.9 gi|284163336|ref|YP_003401615.1| - 0.022 14.3 0.0 0.06 12.9 0.0 1.9 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain CCG PF02754.11 gi|284163337|ref|YP_003401616.1| - 9.6e-17 60.7 0.0 7.1e-12 45.1 0.0 2.4 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|284163337|ref|YP_003401616.1| - 5.1e-11 42.4 5.9 5.1e-11 42.4 4.1 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|284163337|ref|YP_003401616.1| - 7.4e-10 38.9 6.4 7.4e-10 38.9 4.4 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|284163337|ref|YP_003401616.1| - 8.1e-10 37.8 13.2 1.4e-05 24.4 1.2 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|284163337|ref|YP_003401616.1| - 9.8e-10 38.0 6.6 3.1e-05 23.6 0.2 2.8 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|284163337|ref|YP_003401616.1| - 2.9e-09 37.2 4.8 0.0045 17.3 0.1 3.6 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|284163337|ref|YP_003401616.1| - 4.9e-07 30.0 22.6 5.8e-06 26.5 8.5 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|284163337|ref|YP_003401616.1| - 3.7e-06 26.5 20.2 0.00017 21.3 1.7 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|284163337|ref|YP_003401616.1| - 9.4e-06 25.8 7.9 9.4e-06 25.8 5.4 2.8 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|284163337|ref|YP_003401616.1| - 3.6e-05 23.4 22.4 0.00014 21.5 2.0 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|284163337|ref|YP_003401616.1| - 0.00016 21.4 11.8 0.017 14.9 0.4 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|284163337|ref|YP_003401616.1| - 0.00066 19.7 19.5 0.0059 16.8 0.8 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|284163337|ref|YP_003401616.1| - 0.00096 19.8 12.5 0.0027 18.4 7.6 2.5 2 1 1 3 3 2 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|284163337|ref|YP_003401616.1| - 0.052 14.1 9.4 0.34 11.5 0.3 3.2 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|284163337|ref|YP_003401616.1| - 0.3 11.4 15.2 1.3 9.4 2.2 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|284163337|ref|YP_003401616.1| - 0.44 11.2 25.9 0.17 12.4 3.4 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain zf-C4H2 PF10146.4 gi|284163338|ref|YP_003401617.1| - 0.082 12.9 2.4 0.09 12.7 1.7 1.5 1 1 0 1 1 1 0 Zinc finger-containing protein Cas_Cas4 PF01930.12 gi|284163339|ref|YP_003401618.1| - 0.0022 17.9 0.0 0.018 14.9 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|284163339|ref|YP_003401618.1| - 0.074 12.4 4.6 0.52 9.6 0.1 2.4 1 1 1 2 2 2 0 PD-(D/E)XK nuclease superfamily Sua5_yciO_yrdC PF01300.13 gi|284163341|ref|YP_003401620.1| - 1.2e-44 151.6 0.0 1.4e-44 151.5 0.0 1.0 1 0 0 1 1 1 1 Telomere recombination AhpC-TSA PF00578.16 gi|284163342|ref|YP_003401621.1| - 2.5e-07 30.4 0.0 3.5e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|284163342|ref|YP_003401621.1| - 0.00012 21.6 0.0 0.00018 21.0 0.0 1.4 1 1 0 1 1 1 1 Redoxin GST_N_3 PF13417.1 gi|284163343|ref|YP_003401622.1| - 5.1e-14 52.2 0.0 6.3e-14 51.9 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.19 gi|284163343|ref|YP_003401622.1| - 7.9e-12 44.9 0.1 1.1e-11 44.4 0.1 1.3 1 0 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.1 gi|284163343|ref|YP_003401622.1| - 4.5e-11 42.5 0.0 5.5e-11 42.3 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.15 gi|284163343|ref|YP_003401622.1| - 0.024 14.8 0.0 0.032 14.4 0.0 1.3 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain DUF836 PF05768.9 gi|284163343|ref|YP_003401622.1| - 0.12 12.6 0.1 0.14 12.4 0.1 1.4 1 1 0 1 1 1 0 Glutaredoxin-like domain (DUF836) DUF21 PF01595.15 gi|284163344|ref|YP_003401623.1| - 4.3e-55 185.8 1.1 5.9e-55 185.4 0.7 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF21 CorC_HlyC PF03471.12 gi|284163344|ref|YP_003401623.1| - 1.5e-21 75.9 2.5 1.5e-21 75.9 1.7 2.0 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.23 gi|284163344|ref|YP_003401623.1| - 2.5e-19 68.7 3.7 3e-09 36.5 0.2 2.7 2 0 0 2 2 2 2 CBS domain 4HBT PF03061.17 gi|284163345|ref|YP_003401624.1| - 1e-17 63.9 0.1 1.6e-17 63.4 0.1 1.3 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.1 gi|284163345|ref|YP_003401624.1| - 0.00051 20.4 0.0 0.00057 20.3 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily AAA PF00004.24 gi|284163346|ref|YP_003401625.1| - 1.2e-12 48.1 0.1 3.9e-12 46.5 0.0 1.9 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) Rep_fac_C PF08542.6 gi|284163346|ref|YP_003401625.1| - 9.8e-12 44.7 0.1 2.4e-11 43.4 0.0 1.7 2 0 0 2 2 1 1 Replication factor C C-terminal domain DNA_pol3_delta2 PF13177.1 gi|284163346|ref|YP_003401625.1| - 1.7e-11 44.0 0.0 2.7e-11 43.3 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_22 PF13401.1 gi|284163346|ref|YP_003401625.1| - 2.1e-07 31.1 0.0 4.9e-07 29.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|284163346|ref|YP_003401625.1| - 2.8e-06 27.4 0.4 8.1e-05 22.6 0.0 2.6 2 1 0 2 2 2 1 AAA ATPase domain AAA_14 PF13173.1 gi|284163346|ref|YP_003401625.1| - 8.6e-06 25.6 0.0 1.9e-05 24.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|284163346|ref|YP_003401625.1| - 1.7e-05 24.4 0.0 4.2e-05 23.2 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_24 PF13479.1 gi|284163346|ref|YP_003401625.1| - 1.7e-05 24.4 0.0 2.6e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain Sigma54_activat PF00158.21 gi|284163346|ref|YP_003401625.1| - 1.9e-05 24.2 0.0 0.00046 19.6 0.0 2.5 3 0 0 3 3 3 1 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|284163346|ref|YP_003401625.1| - 2e-05 23.8 0.0 3.1e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_18 PF13238.1 gi|284163346|ref|YP_003401625.1| - 6.5e-05 23.2 0.0 0.00015 22.0 0.0 1.6 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|284163346|ref|YP_003401625.1| - 0.00011 21.4 0.1 0.00029 19.9 0.0 1.8 1 1 0 1 1 1 1 Zeta toxin NACHT PF05729.7 gi|284163346|ref|YP_003401625.1| - 0.00023 20.8 0.0 0.00055 19.6 0.0 1.6 1 0 0 1 1 1 1 NACHT domain Sigma54_activ_2 PF14532.1 gi|284163346|ref|YP_003401625.1| - 0.00027 20.9 0.0 0.015 15.3 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_17 PF13207.1 gi|284163346|ref|YP_003401625.1| - 0.0007 20.3 0.1 0.0029 18.4 0.0 2.2 2 1 0 2 2 1 1 AAA domain AAA_5 PF07728.9 gi|284163346|ref|YP_003401625.1| - 0.00095 18.8 0.9 0.0053 16.4 0.2 2.3 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) T2SE PF00437.15 gi|284163346|ref|YP_003401625.1| - 0.0018 17.2 0.0 0.0042 16.0 0.0 1.6 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_25 PF13481.1 gi|284163346|ref|YP_003401625.1| - 0.0023 17.3 0.0 1.6 8.0 0.0 2.4 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|284163346|ref|YP_003401625.1| - 0.0048 16.3 0.0 0.013 14.9 0.0 1.7 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_11 PF13086.1 gi|284163346|ref|YP_003401625.1| - 0.0081 15.7 0.0 0.016 14.7 0.0 1.4 1 1 0 1 1 1 1 AAA domain DNA_pol3_delta PF06144.8 gi|284163346|ref|YP_003401625.1| - 0.012 15.1 0.0 0.021 14.3 0.0 1.4 1 0 0 1 1 1 0 DNA polymerase III, delta subunit FtsK_SpoIIIE PF01580.13 gi|284163346|ref|YP_003401625.1| - 0.014 14.9 0.0 0.071 12.5 0.0 2.0 3 0 0 3 3 3 0 FtsK/SpoIIIE family AAA_33 PF13671.1 gi|284163346|ref|YP_003401625.1| - 0.016 15.1 0.0 0.031 14.1 0.0 1.6 1 1 0 1 1 1 0 AAA domain TIP49 PF06068.8 gi|284163346|ref|YP_003401625.1| - 0.027 13.1 0.0 0.14 10.7 0.0 1.9 2 0 0 2 2 2 0 TIP49 C-terminus DEAD PF00270.24 gi|284163346|ref|YP_003401625.1| - 0.033 13.6 0.3 2.2 7.7 0.0 2.3 1 1 1 2 2 2 0 DEAD/DEAH box helicase AAA_30 PF13604.1 gi|284163346|ref|YP_003401625.1| - 0.036 13.6 0.0 0.066 12.7 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_2 PF07724.9 gi|284163346|ref|YP_003401625.1| - 0.036 13.9 0.0 0.082 12.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|284163346|ref|YP_003401625.1| - 0.055 12.4 0.0 0.26 10.2 0.0 1.9 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus Terminase_6 PF03237.10 gi|284163346|ref|YP_003401625.1| - 0.076 11.7 0.0 0.1 11.3 0.0 1.3 1 1 0 1 1 1 0 Terminase-like family RNA_helicase PF00910.17 gi|284163346|ref|YP_003401625.1| - 0.12 12.5 0.0 0.32 11.1 0.0 1.8 2 0 0 2 2 1 0 RNA helicase CARDB PF07705.6 gi|284163347|ref|YP_003401626.1| - 1.2e-05 25.3 0.1 1.2e-05 25.3 0.1 2.9 3 0 0 3 3 3 1 CARDB Mycobact_memb PF05423.8 gi|284163347|ref|YP_003401626.1| - 0.095 12.4 0.0 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 Mycobacterium membrane protein FixH PF05751.6 gi|284163347|ref|YP_003401626.1| - 3 7.6 7.2 2.1 8.1 0.0 3.1 4 1 0 4 4 4 0 FixH Lactamase_B_2 PF12706.2 gi|284163348|ref|YP_003401627.1| - 9.5e-30 103.5 0.0 1.4e-29 103.0 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|284163348|ref|YP_003401627.1| - 1.9e-12 47.2 2.3 9.3e-11 41.7 1.5 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily AP_endonuc_2 PF01261.19 gi|284163348|ref|YP_003401627.1| - 0.1 11.8 3.8 0.18 11.0 2.6 1.6 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel DUF460 PF04312.8 gi|284163349|ref|YP_003401628.1| - 1.8e-50 170.0 1.0 4.3e-50 168.8 0.2 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF460) DUF2968 PF11180.3 gi|284163349|ref|YP_003401628.1| - 0.01 15.2 11.7 0.01 15.2 8.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) FlaC_arch PF05377.6 gi|284163349|ref|YP_003401628.1| - 0.017 15.0 8.2 0.86 9.5 1.9 2.6 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) DUF812 PF05667.6 gi|284163349|ref|YP_003401628.1| - 0.032 12.7 10.1 0.074 11.5 7.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF812) BLOC1_2 PF10046.4 gi|284163349|ref|YP_003401628.1| - 0.056 13.5 6.1 0.32 11.1 1.3 2.6 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 BcrAD_BadFG PF01869.15 gi|284163349|ref|YP_003401628.1| - 0.057 12.7 0.0 0.17 11.1 0.0 1.8 2 1 0 2 2 1 0 BadF/BadG/BcrA/BcrD ATPase family Atg14 PF10186.4 gi|284163349|ref|YP_003401628.1| - 0.061 12.2 12.9 0.1 11.4 8.9 1.4 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 AAA_13 PF13166.1 gi|284163349|ref|YP_003401628.1| - 0.066 11.6 6.2 0.1 11.0 4.3 1.2 1 0 0 1 1 1 0 AAA domain IncA PF04156.9 gi|284163349|ref|YP_003401628.1| - 0.075 12.6 24.9 0.41 10.1 9.7 2.6 2 1 1 3 3 3 0 IncA protein TMF_TATA_bd PF12325.3 gi|284163349|ref|YP_003401628.1| - 0.076 12.7 23.6 0.57 9.9 7.2 2.7 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding Herpes_UL6 PF01763.11 gi|284163349|ref|YP_003401628.1| - 0.11 10.6 5.7 0.18 9.9 3.9 1.2 1 0 0 1 1 1 0 Herpesvirus UL6 like Baculo_PEP_C PF04513.7 gi|284163349|ref|YP_003401628.1| - 0.14 11.9 0.1 0.28 11.0 0.1 1.4 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus APG6 PF04111.7 gi|284163349|ref|YP_003401628.1| - 0.15 11.0 15.9 0.29 10.1 11.1 1.4 1 0 0 1 1 1 0 Autophagy protein Apg6 Spc7 PF08317.6 gi|284163349|ref|YP_003401628.1| - 0.23 10.0 11.8 0.37 9.3 8.2 1.3 1 0 0 1 1 1 0 Spc7 kinetochore protein V_ATPase_I PF01496.14 gi|284163349|ref|YP_003401628.1| - 0.24 9.1 13.4 0.47 8.2 9.3 1.4 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family HOOK PF05622.7 gi|284163349|ref|YP_003401628.1| - 0.33 8.7 19.6 0.73 7.5 13.6 1.5 1 1 0 1 1 1 0 HOOK protein PspA_IM30 PF04012.7 gi|284163349|ref|YP_003401628.1| - 0.45 9.8 20.3 0.17 11.2 11.2 2.4 2 1 0 2 2 1 0 PspA/IM30 family ATG16 PF08614.6 gi|284163349|ref|YP_003401628.1| - 0.66 9.7 22.6 0.2 11.4 5.4 2.5 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) DUF1664 PF07889.7 gi|284163349|ref|YP_003401628.1| - 0.77 9.5 8.5 7.5 6.3 0.2 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Fib_alpha PF08702.5 gi|284163349|ref|YP_003401628.1| - 0.89 9.6 5.8 0.92 9.6 1.1 2.3 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family LMBR1 PF04791.11 gi|284163349|ref|YP_003401628.1| - 0.9 8.0 2.2 1.2 7.6 1.6 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein Cauli_AT PF03233.8 gi|284163349|ref|YP_003401628.1| - 1.2 8.8 8.2 0.1 12.2 2.0 1.8 2 0 0 2 2 2 0 Aphid transmission protein TBPIP PF07106.8 gi|284163349|ref|YP_003401628.1| - 1.2 8.6 13.0 0.51 9.8 5.8 1.9 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) TMCO5 PF14992.1 gi|284163349|ref|YP_003401628.1| - 2.1 7.3 19.4 0.63 9.1 11.2 1.7 1 1 0 1 1 1 0 TMCO5 family DUF342 PF03961.8 gi|284163349|ref|YP_003401628.1| - 2.2 6.5 7.5 3.5 5.9 5.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF342) bZIP_1 PF00170.16 gi|284163349|ref|YP_003401628.1| - 3.4 7.6 22.4 0.26 11.2 4.3 2.8 3 0 0 3 3 2 0 bZIP transcription factor AKNA PF12443.3 gi|284163349|ref|YP_003401628.1| - 3.8 7.5 9.2 5.7 7.0 2.1 2.4 1 1 1 2 2 2 0 AT-hook-containing transcription factor FlaG PF03646.10 gi|284163349|ref|YP_003401628.1| - 3.8 7.6 10.6 0.98 9.5 1.4 2.5 1 1 0 2 2 2 0 FlaG protein TMF_DNA_bd PF12329.3 gi|284163349|ref|YP_003401628.1| - 5.7 6.8 24.8 0.6 9.9 8.7 2.9 2 1 1 3 3 2 0 TATA element modulatory factor 1 DNA binding Spc24 PF08286.6 gi|284163349|ref|YP_003401628.1| - 9.1 6.0 14.7 11 5.7 2.3 2.7 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 DUF1700 PF08006.6 gi|284163351|ref|YP_003401630.1| - 1.3 8.3 4.7 1.3 8.2 3.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1700) DUF4225 PF13988.1 gi|284163351|ref|YP_003401630.1| - 2.4 7.6 4.8 2.6 7.4 3.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4225) IncA PF04156.9 gi|284163351|ref|YP_003401630.1| - 3.8 7.0 17.2 4.8 6.7 11.9 1.1 1 0 0 1 1 1 0 IncA protein ExoD PF06055.7 gi|284163351|ref|YP_003401630.1| - 8.2 5.4 9.0 9.3 5.3 6.2 1.1 1 0 0 1 1 1 0 Exopolysaccharide synthesis, ExoD eIF-1a PF01176.14 gi|284163352|ref|YP_003401631.1| - 7.9e-29 98.8 0.2 1e-28 98.5 0.2 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 Sclerostin PF05463.6 gi|284163352|ref|YP_003401631.1| - 0.03 13.8 0.0 0.04 13.4 0.0 1.2 1 0 0 1 1 1 0 Sclerostin (SOST) Peptidase_S8 PF00082.17 gi|284163353|ref|YP_003401632.1| - 1.8e-50 171.6 7.0 2.4e-50 171.3 4.8 1.1 1 0 0 1 1 1 1 Subtilase family TAT_signal PF10518.4 gi|284163353|ref|YP_003401632.1| - 4.7 7.4 15.1 0.18 11.8 4.5 2.7 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Aminotran_5 PF00266.14 gi|284163354|ref|YP_003401633.1| - 2.2e-29 102.3 0.0 2.7e-29 102.0 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|284163354|ref|YP_003401633.1| - 0.00054 19.1 0.0 0.0017 17.5 0.0 1.7 1 1 0 1 1 1 1 Beta-eliminating lyase Copper-bind PF00127.15 gi|284163355|ref|YP_003401634.1| - 1.4e-13 50.8 0.0 1.8e-06 28.0 0.0 2.5 2 0 0 2 2 2 2 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.4 gi|284163355|ref|YP_003401634.1| - 0.017 15.1 5.8 0.029 14.3 4.0 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Herpes_LMP1 PF05297.6 gi|284163355|ref|YP_003401634.1| - 0.32 9.8 4.1 0.46 9.3 2.8 1.2 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) Copper-bind PF00127.15 gi|284163356|ref|YP_003401635.1| - 5.6e-07 29.7 0.0 9.1e-07 29.0 0.0 1.4 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family MFS_1 PF07690.11 gi|284163357|ref|YP_003401636.1| - 3e-34 118.3 62.2 9.6e-21 73.8 21.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF2094 PF09867.4 gi|284163357|ref|YP_003401636.1| - 0.04 13.8 0.3 0.35 10.7 0.1 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2094) DUF3482 PF11981.3 gi|284163357|ref|YP_003401636.1| - 0.35 10.0 1.4 0.76 8.9 1.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3482) TAT_signal PF10518.4 gi|284163358|ref|YP_003401637.1| - 0.32 11.1 6.8 0.7 10.0 4.7 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Methyltransf_23 PF13489.1 gi|284163359|ref|YP_003401638.1| - 1.8e-23 83.0 0.0 2.3e-23 82.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|284163359|ref|YP_003401638.1| - 6.3e-22 77.8 0.0 9e-22 77.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|284163359|ref|YP_003401638.1| - 7.9e-22 77.4 0.0 1.1e-21 77.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|284163359|ref|YP_003401638.1| - 1.2e-16 61.3 0.0 1.9e-16 60.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|284163359|ref|YP_003401638.1| - 3.2e-15 55.8 0.0 3.6e-14 52.4 0.0 1.9 1 1 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|284163359|ref|YP_003401638.1| - 2.4e-12 46.9 0.4 1.2e-11 44.6 0.3 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|284163359|ref|YP_003401638.1| - 2.6e-12 47.0 0.0 3.9e-12 46.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|284163359|ref|YP_003401638.1| - 3.9e-12 46.4 0.0 6e-12 45.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|284163359|ref|YP_003401638.1| - 8.2e-08 31.8 0.0 1.3e-07 31.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.9 gi|284163359|ref|YP_003401638.1| - 7.8e-06 25.1 0.0 1.1e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB PrmA PF06325.8 gi|284163359|ref|YP_003401638.1| - 1.6e-05 24.1 0.0 1.9e-05 23.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.1 gi|284163359|ref|YP_003401638.1| - 6.2e-05 22.7 0.0 8.8e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain TPMT PF05724.6 gi|284163359|ref|YP_003401638.1| - 7.3e-05 22.3 0.0 0.0001 21.8 0.0 1.3 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) NodS PF05401.6 gi|284163359|ref|YP_003401638.1| - 0.00041 19.7 0.0 0.00054 19.4 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) PCMT PF01135.14 gi|284163359|ref|YP_003401638.1| - 0.0013 18.3 0.0 0.0016 18.0 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.15 gi|284163359|ref|YP_003401638.1| - 0.0018 17.3 0.0 0.0023 16.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MetW PF07021.7 gi|284163359|ref|YP_003401638.1| - 0.0037 16.6 0.0 0.0054 16.1 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Mur_ligase PF01225.20 gi|284163359|ref|YP_003401638.1| - 0.0098 15.9 0.0 0.017 15.1 0.0 1.4 1 0 0 1 1 1 1 Mur ligase family, catalytic domain UPF0020 PF01170.13 gi|284163359|ref|YP_003401638.1| - 0.02 14.5 0.0 0.029 13.9 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 FmrO PF07091.6 gi|284163359|ref|YP_003401638.1| - 0.059 12.3 0.0 0.084 11.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) AdoMet_MTase PF07757.8 gi|284163359|ref|YP_003401638.1| - 0.095 12.8 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase Methyltransf_15 PF09445.5 gi|284163359|ref|YP_003401638.1| - 0.11 12.0 0.0 0.14 11.6 0.0 1.1 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase TrkA_N PF02254.13 gi|284163359|ref|YP_003401638.1| - 0.13 12.2 0.0 0.29 11.1 0.0 1.5 2 0 0 2 2 1 0 TrkA-N domain DrsE PF02635.10 gi|284163360|ref|YP_003401639.1| - 2.8e-16 59.6 0.0 3.2e-16 59.4 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.1 gi|284163360|ref|YP_003401639.1| - 0.087 12.6 0.1 0.098 12.4 0.1 1.3 1 1 0 1 1 1 0 DsrE/DsrF/DrsH-like family Cys_Met_Meta_PP PF01053.15 gi|284163361|ref|YP_003401640.1| - 1.5e-138 461.2 0.0 1.7e-138 461.0 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.16 gi|284163361|ref|YP_003401640.1| - 4.9e-08 32.3 0.0 7.9e-08 31.6 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|284163361|ref|YP_003401640.1| - 5.1e-08 32.3 1.4 1e-07 31.3 0.5 1.9 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|284163361|ref|YP_003401640.1| - 4.1e-05 22.4 0.0 7.2e-05 21.6 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|284163361|ref|YP_003401640.1| - 0.00096 18.3 0.1 0.0024 17.0 0.0 1.8 1 1 0 1 1 1 1 Beta-eliminating lyase Abhydrolase_1 PF00561.15 gi|284163362|ref|YP_003401641.1| - 7.5e-19 68.1 0.0 1.1e-18 67.6 0.0 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.2 gi|284163362|ref|YP_003401641.1| - 4.1e-14 53.0 4.9 5.8e-14 52.5 3.4 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Esterase PF00756.15 gi|284163362|ref|YP_003401641.1| - 0.073 12.4 0.0 0.34 10.2 0.0 1.9 2 0 0 2 2 2 0 Putative esterase Abhydrolase_4 PF08386.5 gi|284163362|ref|YP_003401641.1| - 0.085 12.7 0.0 0.23 11.3 0.0 1.7 1 0 0 1 1 1 0 TAP-like protein HAD PF12710.2 gi|284163365|ref|YP_003401644.1| - 9.3e-21 74.8 0.8 1.1e-20 74.5 0.6 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|284163365|ref|YP_003401644.1| - 7.3e-15 55.9 3.1 3.1e-10 40.8 0.2 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|284163365|ref|YP_003401644.1| - 2.3e-10 40.5 1.0 1.5e-08 34.5 0.0 2.7 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|284163365|ref|YP_003401644.1| - 5.5e-07 29.9 1.2 1.9e-06 28.2 0.1 2.0 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase UMPH-1 PF05822.7 gi|284163365|ref|YP_003401644.1| - 0.0019 17.5 0.0 0.0036 16.6 0.0 1.5 1 1 1 2 2 2 1 Pyrimidine 5'-nucleotidase (UMPH-1) EamA PF00892.15 gi|284163366|ref|YP_003401645.1| - 1.2e-24 86.7 25.1 4e-15 55.9 7.7 2.2 2 0 0 2 2 2 2 EamA-like transporter family UAA PF08449.6 gi|284163366|ref|YP_003401645.1| - 0.00047 19.1 0.8 0.00094 18.1 0.5 1.5 1 0 0 1 1 1 1 UAA transporter family EmrE PF13536.1 gi|284163366|ref|YP_003401645.1| - 0.0012 19.0 30.0 0.013 15.7 6.6 3.3 2 2 2 4 4 4 2 Multidrug resistance efflux transporter MOSC PF03473.12 gi|284163367|ref|YP_003401646.1| - 5.6e-21 74.4 0.0 8.5e-21 73.8 0.0 1.2 1 0 0 1 1 1 1 MOSC domain MOSC_N PF03476.11 gi|284163367|ref|YP_003401646.1| - 9.2e-17 60.8 0.0 3.3e-16 59.0 0.0 1.8 1 1 1 2 2 2 1 MOSC N-terminal beta barrel domain FAM177 PF14774.1 gi|284163370|ref|YP_003401649.1| - 7.4 6.5 6.9 4.4 7.2 2.8 1.9 2 0 0 2 2 2 0 FAM177 family 2-Hacid_dh_C PF02826.14 gi|284163372|ref|YP_003401651.1| - 9.8e-58 194.2 0.0 2.3e-57 193.0 0.0 1.7 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|284163372|ref|YP_003401651.1| - 1.6e-35 121.4 0.4 2.7e-35 120.7 0.3 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACT PF01842.20 gi|284163372|ref|YP_003401651.1| - 0.00092 18.6 0.1 0.00092 18.6 0.1 3.1 3 1 1 4 4 4 1 ACT domain NAD_binding_2 PF03446.10 gi|284163372|ref|YP_003401651.1| - 0.001 18.9 0.1 0.0054 16.5 0.0 2.3 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|284163372|ref|YP_003401651.1| - 0.0012 18.2 0.1 0.0073 15.6 0.0 2.2 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain TrkA_N PF02254.13 gi|284163372|ref|YP_003401651.1| - 0.0035 17.3 0.6 0.023 14.7 0.0 2.7 3 0 0 3 3 3 1 TrkA-N domain UDPG_MGDP_dh_C PF03720.10 gi|284163372|ref|YP_003401651.1| - 0.0037 17.3 0.0 0.012 15.7 0.0 1.8 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ELFV_dehydrog PF00208.16 gi|284163372|ref|YP_003401651.1| - 0.007 15.9 0.1 0.035 13.6 0.0 2.0 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NAD_binding_7 PF13241.1 gi|284163372|ref|YP_003401651.1| - 0.04 14.1 0.0 0.12 12.6 0.0 1.8 1 0 0 1 1 1 0 Putative NAD(P)-binding CARDB PF07705.6 gi|284163373|ref|YP_003401652.1| - 5.3e-05 23.1 0.1 0.00014 21.8 0.1 1.7 1 0 0 1 1 1 1 CARDB SpoIIIAH PF12685.2 gi|284163373|ref|YP_003401652.1| - 6.1 6.2 7.4 0.37 10.2 1.2 1.8 2 0 0 2 2 2 0 SpoIIIAH-like protein PRA-CH PF01502.13 gi|284163374|ref|YP_003401653.1| - 7.5e-37 124.8 0.4 1.1e-36 124.2 0.1 1.4 2 0 0 2 2 2 1 Phosphoribosyl-AMP cyclohydrolase ECM11 PF15463.1 gi|284163375|ref|YP_003401654.1| - 0.061 13.6 1.3 0.2 11.9 0.9 1.8 1 0 0 1 1 1 0 Extracellular mutant protein 11 Mnd1 PF03962.10 gi|284163375|ref|YP_003401654.1| - 0.082 12.5 7.2 4.2 7.0 0.0 3.3 3 0 0 3 3 3 0 Mnd1 family Usp PF00582.21 gi|284163376|ref|YP_003401655.1| - 5.8e-31 107.5 0.9 6.5e-31 107.3 0.6 1.0 1 0 0 1 1 1 1 Universal stress protein family HPP PF04982.8 gi|284163377|ref|YP_003401656.1| - 2.2e-11 43.6 9.0 4.6e-11 42.6 6.2 1.5 1 1 0 1 1 1 1 HPP family Peptidase_M50 PF02163.17 gi|284163378|ref|YP_003401657.1| - 8.1e-27 93.4 0.0 4.2e-26 91.1 0.0 2.2 2 1 0 2 2 2 1 Peptidase family M50 PDZ_2 PF13180.1 gi|284163378|ref|YP_003401657.1| - 9.4e-19 67.0 8.8 2.3e-09 37.0 0.3 4.1 2 1 2 4 4 4 3 PDZ domain Tricorn_PDZ PF14685.1 gi|284163378|ref|YP_003401657.1| - 7.3e-10 38.5 0.8 8.1e-05 22.3 0.1 3.2 2 1 1 3 3 3 2 Tricorn protease PDZ domain PDZ PF00595.19 gi|284163378|ref|YP_003401657.1| - 4.6e-08 33.1 0.3 0.00014 21.9 0.0 3.5 2 1 1 3 3 3 2 PDZ domain (Also known as DHR or GLGF) PGM_PMM_I PF02878.11 gi|284163379|ref|YP_003401658.1| - 3.3e-32 110.8 0.0 8.2e-32 109.5 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|284163379|ref|YP_003401658.1| - 7.4e-29 100.1 0.7 3.2e-28 98.0 0.1 2.2 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|284163379|ref|YP_003401658.1| - 2.9e-15 56.0 0.2 1.3e-14 53.9 0.1 2.2 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.11 gi|284163379|ref|YP_003401658.1| - 1.6e-14 53.8 0.0 3.4e-14 52.8 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PQQ_2 PF13360.1 gi|284163380|ref|YP_003401659.1| - 0.012 15.1 2.0 0.24 10.8 0.1 2.2 2 0 0 2 2 2 0 PQQ-like domain Plasmid_stab_B PF10784.4 gi|284163380|ref|YP_003401659.1| - 0.089 12.4 0.0 0.2 11.3 0.0 1.5 1 0 0 1 1 1 0 Plasmid stability protein Pribosyltran_N PF13793.1 gi|284163382|ref|YP_003401661.1| - 9.7e-21 73.6 0.0 2.1e-19 69.3 0.0 2.2 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|284163382|ref|YP_003401661.1| - 5.9e-10 38.9 2.2 2.5e-09 36.9 0.3 2.6 2 1 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.1 gi|284163382|ref|YP_003401661.1| - 6.1e-07 29.3 1.6 9.2e-07 28.7 0.3 1.7 2 0 0 2 2 2 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.1 gi|284163382|ref|YP_003401661.1| - 2e-06 27.1 0.1 3.5e-06 26.3 0.1 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|284163382|ref|YP_003401661.1| - 0.022 14.0 0.1 5.3 6.2 0.2 2.4 1 1 1 2 2 2 0 Phosphoribosyl transferase Peptidase_MA_2 PF13485.1 gi|284163383|ref|YP_003401662.1| - 7.1e-06 26.0 1.9 1.4e-05 25.1 1.3 1.5 1 0 0 1 1 1 1 Peptidase MA superfamily CARDB PF07705.6 gi|284163383|ref|YP_003401662.1| - 0.00014 21.8 0.0 0.017 15.1 0.0 3.2 3 1 0 3 3 3 1 CARDB YtkA PF13115.1 gi|284163383|ref|YP_003401662.1| - 0.021 15.1 0.0 4.8 7.6 0.0 3.4 3 0 0 3 3 3 0 YtkA-like Cohesin PF00963.13 gi|284163383|ref|YP_003401662.1| - 0.049 13.4 0.5 0.9 9.3 0.1 2.9 3 0 0 3 3 3 0 Cohesin domain tRNA-synt_1 PF00133.17 gi|284163384|ref|YP_003401663.1| - 5e-180 599.4 0.2 6.3e-180 599.1 0.2 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|284163384|ref|YP_003401663.1| - 3.9e-30 104.6 0.0 8e-30 103.6 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|284163384|ref|YP_003401663.1| - 2.7e-29 102.0 0.2 5.1e-11 41.8 0.0 3.9 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.1 gi|284163384|ref|YP_003401663.1| - 1.1e-06 28.0 0.0 2.2e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|284163384|ref|YP_003401663.1| - 0.0016 17.6 0.0 0.2 10.7 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain YrhK PF14145.1 gi|284163385|ref|YP_003401664.1| - 0.039 13.6 2.1 0.056 13.1 1.5 1.2 1 0 0 1 1 1 0 YrhK-like protein NADH-u_ox-rdase PF10785.4 gi|284163385|ref|YP_003401664.1| - 0.2 11.9 2.8 0.25 11.5 1.9 1.1 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit K_trans PF02705.11 gi|284163385|ref|YP_003401664.1| - 0.28 9.4 2.9 0.31 9.3 2.0 1.0 1 0 0 1 1 1 0 K+ potassium transporter DUF2892 PF11127.3 gi|284163385|ref|YP_003401664.1| - 0.29 10.9 5.1 0.4 10.5 3.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) BTP PF05232.7 gi|284163385|ref|YP_003401664.1| - 0.43 10.3 1.9 3 7.6 0.1 2.1 1 1 1 2 2 2 0 Bacterial Transmembrane Pair family Cyt_c_ox_IV PF12270.3 gi|284163385|ref|YP_003401664.1| - 0.65 9.7 4.0 0.69 9.6 0.8 1.9 1 1 1 2 2 2 0 Cytochrome c oxidase subunit IV UDG PF03167.14 gi|284163386|ref|YP_003401665.1| - 7.9e-23 80.6 0.0 1.2e-22 80.0 0.0 1.3 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily GDPD PF03009.12 gi|284163387|ref|YP_003401666.1| - 1.1e-24 87.3 0.0 2.8e-23 82.7 0.0 2.0 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family HPHLAWLY PF14925.1 gi|284163387|ref|YP_003401666.1| - 0.026 12.5 0.0 0.033 12.2 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function NTP_transf_3 PF12804.2 gi|284163388|ref|YP_003401667.1| - 2.2e-16 60.3 0.3 7.9e-16 58.5 0.2 1.8 1 1 0 1 1 1 1 MobA-like NTP transferase domain NTP_transferase PF00483.18 gi|284163388|ref|YP_003401667.1| - 0.00011 21.6 0.0 0.00084 18.7 0.0 2.3 1 1 1 2 2 2 1 Nucleotidyl transferase IspD PF01128.14 gi|284163388|ref|YP_003401667.1| - 0.0013 18.2 0.0 0.0016 17.9 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glyphos_transf PF04464.9 gi|284163389|ref|YP_003401668.1| - 5.2e-05 22.1 0.0 7.9e-05 21.5 0.0 1.3 1 0 0 1 1 1 1 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase HIT PF01230.18 gi|284163391|ref|YP_003401670.1| - 4.7e-28 97.5 0.0 5.7e-28 97.3 0.0 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|284163391|ref|YP_003401670.1| - 7.6e-17 61.6 0.0 9.4e-17 61.3 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|284163391|ref|YP_003401670.1| - 0.036 13.7 0.0 0.055 13.1 0.0 1.2 1 0 0 1 1 1 0 Protein similar to CwfJ C-terminus 1 DUF1469 PF07332.6 gi|284163392|ref|YP_003401671.1| - 5.4 6.7 7.1 6.1 6.6 5.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) MHYT PF03707.11 gi|284163392|ref|YP_003401671.1| - 6.8 6.8 8.5 2.7 8.1 1.1 2.1 1 1 1 2 2 2 0 Bacterial signalling protein N terminal repeat Arc_PepC_II PF06847.6 gi|284163393|ref|YP_003401672.1| - 1e-12 48.2 0.0 1.9e-12 47.4 0.0 1.4 1 0 0 1 1 1 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.13 gi|284163393|ref|YP_003401672.1| - 7.1e-06 26.1 13.7 7.1e-06 26.1 9.5 1.9 2 1 0 2 2 2 1 Type IV leader peptidase family Fer2 PF00111.22 gi|284163394|ref|YP_003401673.1| - 1.3e-14 53.6 0.4 2.1e-14 53.0 0.3 1.3 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|284163394|ref|YP_003401673.1| - 0.12 12.1 0.1 0.26 11.1 0.1 1.5 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain PHO4 PF01384.15 gi|284163395|ref|YP_003401674.1| - 2.7e-52 177.4 30.0 2.7e-52 177.4 20.8 1.6 2 0 0 2 2 2 1 Phosphate transporter family Usp PF00582.21 gi|284163396|ref|YP_003401675.1| - 6.3e-25 88.0 3.1 7.4e-25 87.7 2.2 1.1 1 0 0 1 1 1 1 Universal stress protein family PHO4 PF01384.15 gi|284163397|ref|YP_003401676.1| - 4e-61 206.4 26.8 4e-61 206.4 18.6 1.6 2 0 0 2 2 2 1 Phosphate transporter family TCRP1 PF14944.1 gi|284163397|ref|YP_003401676.1| - 0.034 14.0 0.7 0.78 9.6 0.1 2.3 2 0 0 2 2 2 0 Tongue Cancer Chemotherapy Resistant Protein 1 FtsX PF02687.16 gi|284163397|ref|YP_003401676.1| - 1.5 8.6 29.7 0.024 14.3 4.4 3.9 3 1 0 3 3 3 0 FtsX-like permease family DUF1697 PF08002.6 gi|284163398|ref|YP_003401677.1| - 0.037 14.0 0.3 0.048 13.6 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1697) EII-Sor PF03609.9 gi|284163398|ref|YP_003401677.1| - 0.051 12.8 0.1 0.061 12.5 0.1 1.1 1 0 0 1 1 1 0 PTS system sorbose-specific iic component DUF3325 PF11804.3 gi|284163398|ref|YP_003401677.1| - 0.088 12.7 0.3 0.11 12.4 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3325) DUF4007 PF13182.1 gi|284163398|ref|YP_003401677.1| - 0.1 11.3 0.0 0.12 11.1 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4007) Phasin PF05597.6 gi|284163398|ref|YP_003401677.1| - 0.6 9.8 3.3 0.88 9.3 2.3 1.1 1 0 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) CitMHS PF03600.11 gi|284163399|ref|YP_003401678.1| - 1.2e-39 135.9 13.4 1.5e-39 135.5 9.3 1.1 1 0 0 1 1 1 1 Citrate transporter Na_sulph_symp PF00939.14 gi|284163399|ref|YP_003401678.1| - 2.9e-25 89.1 36.2 6.8e-17 61.4 13.2 3.1 2 1 1 3 3 3 3 Sodium:sulfate symporter transmembrane region TrkA_C PF02080.16 gi|284163399|ref|YP_003401678.1| - 9.1e-20 70.0 6.9 1.5e-12 46.8 0.7 2.5 2 0 0 2 2 2 2 TrkA-C domain His_biosynth PF00977.16 gi|284163400|ref|YP_003401679.1| - 1.2e-77 260.2 3.8 1.3e-77 260.1 2.7 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.12 gi|284163400|ref|YP_003401679.1| - 1.1e-12 47.4 0.1 8.1e-07 28.1 0.0 2.2 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) DHO_dh PF01180.16 gi|284163400|ref|YP_003401679.1| - 4e-12 45.7 0.3 1.2e-07 30.9 0.1 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase ThiG PF05690.9 gi|284163400|ref|YP_003401679.1| - 1.2e-09 37.6 4.1 0.00027 20.1 0.0 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG PcrB PF01884.12 gi|284163400|ref|YP_003401679.1| - 1.7e-08 33.9 6.1 0.0014 17.9 0.1 3.0 2 1 1 3 3 3 2 PcrB family Trp_syntA PF00290.15 gi|284163400|ref|YP_003401679.1| - 8.4e-08 31.0 0.5 0.0018 16.8 0.1 2.2 2 0 0 2 2 2 2 Tryptophan synthase alpha chain IGPS PF00218.16 gi|284163400|ref|YP_003401679.1| - 3e-07 29.7 0.6 0.00026 20.1 0.0 2.9 2 2 1 3 3 3 2 Indole-3-glycerol phosphate synthase NMO PF03060.10 gi|284163400|ref|YP_003401679.1| - 5e-05 22.6 4.9 5e-05 22.6 3.4 2.1 1 1 1 2 2 2 1 Nitronate monooxygenase NanE PF04131.9 gi|284163400|ref|YP_003401679.1| - 6.3e-05 22.0 1.9 0.0062 15.5 0.3 2.5 1 1 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase G3P_antiterm PF04309.7 gi|284163400|ref|YP_003401679.1| - 8.3e-05 21.6 0.9 0.00052 19.1 0.1 2.1 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator TMP-TENI PF02581.12 gi|284163400|ref|YP_003401679.1| - 0.00026 20.1 2.1 0.018 14.1 0.4 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase/TENI IMPDH PF00478.20 gi|284163400|ref|YP_003401679.1| - 0.00042 19.3 2.6 0.0075 15.2 0.4 2.1 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain B12-binding PF02310.14 gi|284163400|ref|YP_003401679.1| - 0.0032 17.3 7.6 4 7.3 4.2 2.8 1 1 1 2 2 2 1 B12 binding domain Ribul_P_3_epim PF00834.14 gi|284163400|ref|YP_003401679.1| - 0.007 15.5 1.1 0.097 11.7 0.1 2.4 2 0 0 2 2 2 1 Ribulose-phosphate 3 epimerase family FMN_dh PF01070.13 gi|284163400|ref|YP_003401679.1| - 0.0082 15.0 10.1 0.037 12.8 1.6 2.2 2 0 0 2 2 2 2 FMN-dependent dehydrogenase PA PF02225.17 gi|284163400|ref|YP_003401679.1| - 0.037 13.7 1.8 1.6 8.5 0.2 2.5 1 1 1 2 2 2 0 PA domain DUF347 PF03988.7 gi|284163401|ref|YP_003401680.1| - 1.2 9.1 4.0 0.96 9.3 0.2 2.0 1 1 1 2 2 2 0 Repeat of Unknown Function (DUF347) IGPD PF00475.13 gi|284163402|ref|YP_003401681.1| - 2e-61 206.0 1.4 2.7e-61 205.6 1.0 1.1 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase Lar_restr_allev PF14354.1 gi|284163403|ref|YP_003401682.1| - 0.0067 16.7 0.2 0.028 14.7 0.1 2.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar Pex14_N PF04695.8 gi|284163403|ref|YP_003401682.1| - 4.6 7.3 11.0 0.93 9.5 0.2 2.8 2 1 0 2 2 2 0 Peroxisomal membrane anchor protein (Pex14p) conserved region ACT PF01842.20 gi|284163404|ref|YP_003401683.1| - 0.00029 20.2 0.1 0.0013 18.2 0.1 2.2 1 1 0 1 1 1 1 ACT domain ACT_7 PF13840.1 gi|284163404|ref|YP_003401683.1| - 0.00086 18.7 0.0 0.0027 17.2 0.0 1.8 2 0 0 2 2 2 1 ACT domain UPF0029 PF01205.14 gi|284163406|ref|YP_003401685.1| - 2.4e-34 117.3 0.0 3.3e-34 116.8 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein family UPF0029 DUF1949 PF09186.6 gi|284163406|ref|YP_003401685.1| - 7e-14 51.1 0.4 6.8e-13 48.0 0.1 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF1949) EFG_C PF00679.19 gi|284163406|ref|YP_003401685.1| - 5.2e-05 23.0 0.0 9.8e-05 22.1 0.0 1.5 1 0 0 1 1 1 1 Elongation factor G C-terminus DctM PF06808.7 gi|284163407|ref|YP_003401686.1| - 1.3e-77 261.1 61.9 7.2e-55 186.2 21.8 2.8 3 0 0 3 3 3 2 DctM-like transporters DUF1850 PF08905.6 gi|284163408|ref|YP_003401687.1| - 6.2e-17 61.2 0.0 9.3e-17 60.6 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1850) DUF4330 PF14221.1 gi|284163408|ref|YP_003401687.1| - 0.0024 17.7 1.2 0.041 13.7 0.4 2.0 1 1 1 2 2 2 2 Domain of unknown function (DUF4330) Phosphonate-bd PF12974.2 gi|284163409|ref|YP_003401688.1| - 3.3e-11 43.0 3.3 7.2e-11 41.9 2.3 1.6 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1 PF09084.6 gi|284163409|ref|YP_003401688.1| - 7.9e-11 41.9 2.7 1.7e-10 40.8 0.3 2.1 2 0 0 2 2 2 1 NMT1/THI5 like PBP_like PF12727.2 gi|284163409|ref|YP_003401688.1| - 6.4e-05 21.9 0.6 0.00013 20.9 0.4 1.6 1 1 0 1 1 1 1 PBP superfamily domain TAT_signal PF10518.4 gi|284163409|ref|YP_003401688.1| - 0.024 14.5 0.1 0.053 13.5 0.1 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence bPH_6 PF10756.4 gi|284163410|ref|YP_003401689.1| - 0.0094 15.8 1.8 0.03 14.1 1.2 1.9 1 0 0 1 1 1 1 Bacterial PH domain Plasmid_stab_B PF10784.4 gi|284163410|ref|YP_003401689.1| - 0.053 13.1 0.1 0.15 11.6 0.1 1.7 1 0 0 1 1 1 0 Plasmid stability protein Peptidase_S9 PF00326.16 gi|284163411|ref|YP_003401690.1| - 3.3e-55 186.6 0.2 4.8e-55 186.0 0.2 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family PD40 PF07676.7 gi|284163411|ref|YP_003401690.1| - 2.7e-13 49.2 0.2 1.3e-07 31.1 0.1 5.0 4 0 0 4 4 4 2 WD40-like Beta Propeller Repeat Abhydrolase_5 PF12695.2 gi|284163411|ref|YP_003401690.1| - 1.6e-10 40.8 0.3 3.6e-10 39.7 0.2 1.7 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|284163411|ref|YP_003401690.1| - 3.3e-09 36.9 7.2 1.4e-08 34.9 5.0 2.1 1 1 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|284163411|ref|YP_003401690.1| - 1.3e-06 27.8 0.0 2.7e-06 26.8 0.0 1.4 1 1 0 1 1 1 1 Dienelactone hydrolase family AXE1 PF05448.7 gi|284163411|ref|YP_003401690.1| - 6.1e-06 24.9 0.4 0.001 17.6 0.2 2.2 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) DPPIV_N PF00930.16 gi|284163411|ref|YP_003401690.1| - 0.00024 19.8 0.0 0.17 10.4 0.0 4.2 4 1 2 6 6 6 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region Abhydrolase_4 PF08386.5 gi|284163411|ref|YP_003401690.1| - 0.0019 18.0 0.0 0.014 15.3 0.0 2.1 2 0 0 2 2 2 1 TAP-like protein Peptidase_S9_N PF02897.10 gi|284163411|ref|YP_003401690.1| - 0.02 13.4 0.1 1.5 7.3 0.0 2.8 2 1 0 2 2 2 0 Prolyl oligopeptidase, N-terminal beta-propeller domain BAAT_C PF08840.6 gi|284163411|ref|YP_003401690.1| - 0.054 13.2 0.0 0.68 9.5 0.0 2.1 2 0 0 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal DUF2892 PF11127.3 gi|284163412|ref|YP_003401691.1| - 1.7e-18 66.2 0.3 1.8e-18 66.1 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) DUF4203 PF13886.1 gi|284163412|ref|YP_003401691.1| - 0.047 13.1 0.1 0.062 12.7 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4203) Cupin_2 PF07883.6 gi|284163413|ref|YP_003401692.1| - 1e-10 40.9 0.8 1.2e-10 40.6 0.5 1.2 1 0 0 1 1 1 1 Cupin domain MannoseP_isomer PF01050.13 gi|284163413|ref|YP_003401692.1| - 2.9e-05 23.7 0.0 3.5e-05 23.4 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_1 PF00190.17 gi|284163413|ref|YP_003401692.1| - 0.00072 19.0 0.0 0.0012 18.3 0.0 1.3 1 1 0 1 1 1 1 Cupin KduI PF04962.7 gi|284163413|ref|YP_003401692.1| - 0.0017 17.4 0.0 0.002 17.2 0.0 1.0 1 0 0 1 1 1 1 KduI/IolB family Cupin_7 PF12973.2 gi|284163413|ref|YP_003401692.1| - 0.0068 16.2 0.0 0.0088 15.8 0.0 1.2 1 0 0 1 1 1 1 ChrR Cupin-like domain AraC_binding PF02311.14 gi|284163413|ref|YP_003401692.1| - 0.12 12.1 0.0 0.15 11.7 0.0 1.2 1 0 0 1 1 1 0 AraC-like ligand binding domain UPRTase PF14681.1 gi|284163414|ref|YP_003401693.1| - 1.8e-56 190.6 0.0 2.1e-56 190.4 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.22 gi|284163414|ref|YP_003401693.1| - 2.7e-07 30.3 0.1 4.2e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain BPD_transp_1 PF00528.17 gi|284163417|ref|YP_003401696.1| - 2.7e-16 59.6 5.8 2.7e-16 59.6 4.0 2.4 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|284163418|ref|YP_003401697.1| - 2e-33 115.5 0.0 2.6e-33 115.2 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284163418|ref|YP_003401697.1| - 5.3e-13 49.5 0.0 4.3e-06 26.9 0.0 2.2 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|284163418|ref|YP_003401697.1| - 9.2e-07 28.3 0.0 2.4e-06 26.9 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|284163418|ref|YP_003401697.1| - 5.8e-05 22.3 0.0 0.0072 15.4 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|284163418|ref|YP_003401697.1| - 6.2e-05 22.4 0.0 0.00012 21.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|284163418|ref|YP_003401697.1| - 0.00015 21.7 0.5 0.00059 19.8 0.3 2.2 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|284163418|ref|YP_003401697.1| - 0.0002 20.5 0.0 0.00029 20.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|284163418|ref|YP_003401697.1| - 0.001 18.9 0.0 0.0017 18.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain ABC_ATPase PF09818.4 gi|284163418|ref|YP_003401697.1| - 0.0013 17.4 0.0 0.75 8.3 0.0 2.1 2 0 0 2 2 2 2 Predicted ATPase of the ABC class AAA_22 PF13401.1 gi|284163418|ref|YP_003401697.1| - 0.0023 18.0 0.0 0.0049 17.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|284163418|ref|YP_003401697.1| - 0.0026 18.5 0.0 0.0074 17.0 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|284163418|ref|YP_003401697.1| - 0.0033 16.9 0.0 0.02 14.3 0.0 1.9 1 1 0 2 2 2 1 AAA-like domain Arch_ATPase PF01637.13 gi|284163418|ref|YP_003401697.1| - 0.0079 15.9 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase AAA_23 PF13476.1 gi|284163418|ref|YP_003401697.1| - 0.008 16.5 0.0 0.016 15.5 0.0 1.4 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|284163418|ref|YP_003401697.1| - 0.013 15.1 0.0 0.032 13.9 0.0 1.6 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|284163418|ref|YP_003401697.1| - 0.023 14.9 0.0 0.038 14.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|284163418|ref|YP_003401697.1| - 0.029 14.2 0.4 0.31 10.9 0.3 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.1 gi|284163418|ref|YP_003401697.1| - 0.03 13.9 0.0 0.059 12.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|284163418|ref|YP_003401697.1| - 0.031 14.0 0.0 0.077 12.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.16 gi|284163418|ref|YP_003401697.1| - 0.032 13.3 0.0 0.77 8.8 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_25 PF13481.1 gi|284163418|ref|YP_003401697.1| - 0.035 13.5 0.2 0.11 11.8 0.0 2.0 2 1 0 2 2 2 0 AAA domain HHH_6 PF14579.1 gi|284163418|ref|YP_003401697.1| - 0.083 12.9 0.0 0.19 11.8 0.0 1.6 1 0 0 1 1 1 0 Helix-hairpin-helix motif AAA_13 PF13166.1 gi|284163418|ref|YP_003401697.1| - 0.12 10.7 0.0 6.5 5.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|284163418|ref|YP_003401697.1| - 0.12 11.9 0.0 0.22 11.1 0.0 1.4 1 0 0 1 1 1 0 NACHT domain cobW PF02492.14 gi|284163418|ref|YP_003401697.1| - 0.14 11.5 0.1 0.18 11.2 0.1 1.4 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain BPD_transp_1 PF00528.17 gi|284163419|ref|YP_003401698.1| - 6.9e-16 58.3 11.0 6.9e-16 58.3 7.7 1.4 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component SBP_bac_3 PF00497.15 gi|284163420|ref|YP_003401699.1| - 2.7e-56 190.3 0.1 3e-56 190.1 0.1 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 DUF2846 PF11008.3 gi|284163420|ref|YP_003401699.1| - 0.014 15.1 0.0 0.027 14.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2846) PHO4 PF01384.15 gi|284163421|ref|YP_003401700.1| - 1.4e-35 122.4 41.9 1.4e-35 122.4 29.1 2.1 1 1 1 2 2 2 1 Phosphate transporter family GAF_2 PF13185.1 gi|284163423|ref|YP_003401702.1| - 1.2e-23 84.1 3.6 9.3e-16 58.6 0.1 3.4 3 0 0 3 3 3 2 GAF domain HTH_10 PF04967.7 gi|284163423|ref|YP_003401702.1| - 4.9e-18 64.4 0.0 1.2e-17 63.2 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain GAF_3 PF13492.1 gi|284163423|ref|YP_003401702.1| - 5.7e-17 62.0 2.8 1.8e-09 37.7 0.1 3.2 3 1 0 3 3 3 2 GAF domain Response_reg PF00072.19 gi|284163423|ref|YP_003401702.1| - 8.6e-15 54.7 0.1 1.3e-12 47.7 0.0 3.5 3 1 0 3 3 3 1 Response regulator receiver domain GAF PF01590.21 gi|284163423|ref|YP_003401702.1| - 4e-05 23.7 5.1 0.0091 16.1 0.0 3.3 3 1 0 3 3 3 2 GAF domain GerE PF00196.14 gi|284163423|ref|YP_003401702.1| - 0.032 13.5 0.0 0.48 9.7 0.0 2.5 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family DUF2116 PF09889.4 gi|284163425|ref|YP_003401704.1| - 0.018 14.8 0.3 0.13 12.1 0.0 1.9 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) DUF581 PF04570.9 gi|284163425|ref|YP_003401704.1| - 0.037 13.3 0.6 0.86 8.9 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF581) zf-MYND PF01753.13 gi|284163425|ref|YP_003401704.1| - 0.038 13.8 0.0 0.06 13.2 0.0 1.4 1 1 0 1 1 1 0 MYND finger zf-FCS PF06467.9 gi|284163425|ref|YP_003401704.1| - 0.042 13.4 1.4 0.14 11.7 1.0 1.7 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif RRN7 PF11781.3 gi|284163425|ref|YP_003401704.1| - 0.38 10.2 2.3 14 5.3 0.4 2.2 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 UPF0020 PF01170.13 gi|284163427|ref|YP_003401706.1| - 6.1e-26 91.0 0.0 1.6e-25 89.7 0.0 1.7 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|284163427|ref|YP_003401706.1| - 6.5e-10 39.0 1.6 9.3e-10 38.5 0.2 1.9 2 0 0 2 2 2 1 Methyltransferase domain THUMP PF02926.12 gi|284163427|ref|YP_003401706.1| - 5.7e-05 23.0 0.0 0.00018 21.4 0.0 1.8 1 1 0 1 1 1 1 THUMP domain Methyltransf_31 PF13847.1 gi|284163427|ref|YP_003401706.1| - 0.00033 20.2 0.0 0.00096 18.7 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|284163427|ref|YP_003401706.1| - 0.00035 21.0 0.0 0.00075 19.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|284163427|ref|YP_003401706.1| - 0.00074 20.0 0.0 0.0015 19.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|284163427|ref|YP_003401706.1| - 0.061 12.8 0.0 0.093 12.2 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase N6_N4_Mtase PF01555.13 gi|284163427|ref|YP_003401706.1| - 0.12 11.8 0.0 0.29 10.5 0.0 1.5 2 0 0 2 2 2 0 DNA methylase TBP PF00352.16 gi|284163428|ref|YP_003401707.1| - 1.5e-65 216.5 0.0 1.5e-31 107.5 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|284163428|ref|YP_003401707.1| - 0.0069 16.4 0.0 1.4 9.0 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) CENP-F_C_Rb_bdg PF10490.4 gi|284163428|ref|YP_003401707.1| - 0.031 13.5 0.6 8.4 5.8 0.0 2.4 2 0 0 2 2 2 0 Rb-binding domain of kinetochore protein Cenp-F/LEK1 DUF3773 PF12608.3 gi|284163428|ref|YP_003401707.1| - 0.055 13.5 0.0 0.23 11.5 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3773) HisG PF01634.13 gi|284163430|ref|YP_003401709.1| - 4.7e-48 162.8 0.2 6.9e-48 162.3 0.1 1.2 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.6 gi|284163430|ref|YP_003401709.1| - 2.5e-24 84.9 0.0 5.5e-24 83.9 0.0 1.6 1 0 0 1 1 1 1 HisG, C-terminal domain YbbR PF07949.7 gi|284163430|ref|YP_003401709.1| - 0.0055 16.8 1.2 0.58 10.3 0.1 2.5 1 1 1 2 2 2 2 YbbR-like protein NMT1 PF09084.6 gi|284163430|ref|YP_003401709.1| - 0.012 15.1 0.0 2.8 7.4 0.0 2.5 2 1 1 3 3 3 0 NMT1/THI5 like E1-E2_ATPase PF00122.15 gi|284163431|ref|YP_003401710.1| - 3e-52 176.9 1.2 3.2e-51 173.5 0.1 2.5 2 1 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|284163431|ref|YP_003401710.1| - 4.5e-45 154.7 8.1 7.1e-45 154.0 5.6 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|284163431|ref|YP_003401710.1| - 5.2e-17 62.6 0.2 1.1e-16 61.6 0.1 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|284163431|ref|YP_003401710.1| - 7.6e-06 25.6 0.1 8e-05 22.3 0.1 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase DUF874 PF05917.6 gi|284163431|ref|YP_003401710.1| - 0.14 10.9 0.1 0.23 10.2 0.0 1.2 1 0 0 1 1 1 0 Helicobacter pylori protein of unknown function (DUF874) GRP PF07172.6 gi|284163431|ref|YP_003401710.1| - 1.3 9.5 13.5 3.1 8.3 9.3 1.6 1 0 0 1 1 1 0 Glycine rich protein family MerB PF03243.10 gi|284163432|ref|YP_003401711.1| - 9.2e-13 48.1 0.0 2e-12 47.0 0.0 1.5 1 1 0 1 1 1 1 Alkylmercury lyase HTH_10 PF04967.7 gi|284163433|ref|YP_003401712.1| - 4.1e-19 67.8 0.1 7.3e-19 67.0 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.7 gi|284163433|ref|YP_003401712.1| - 0.00072 18.9 0.2 0.01 15.2 0.2 2.3 1 1 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.11 gi|284163433|ref|YP_003401712.1| - 0.0046 16.2 0.4 0.012 14.9 0.3 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 Fe_dep_repress PF01325.14 gi|284163433|ref|YP_003401712.1| - 0.02 14.7 0.1 0.035 14.0 0.1 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_29 PF13551.1 gi|284163433|ref|YP_003401712.1| - 0.025 14.7 0.0 0.055 13.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix MarR_2 PF12802.2 gi|284163433|ref|YP_003401712.1| - 0.031 13.9 0.1 0.081 12.6 0.0 1.8 1 0 0 1 1 1 0 MarR family Sigma70_r3 PF04539.11 gi|284163433|ref|YP_003401712.1| - 0.07 13.0 0.7 0.24 11.3 0.4 2.0 1 1 0 1 1 1 0 Sigma-70 region 3 ABC_tran PF00005.22 gi|284163434|ref|YP_003401713.1| - 1.7e-26 93.1 0.0 2.4e-26 92.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284163434|ref|YP_003401713.1| - 2.5e-15 57.2 0.0 1.7e-10 41.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|284163434|ref|YP_003401713.1| - 0.00025 21.4 0.0 0.00038 20.9 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_29 PF13555.1 gi|284163434|ref|YP_003401713.1| - 0.00049 19.5 0.0 0.00085 18.8 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|284163434|ref|YP_003401713.1| - 0.0028 17.6 0.0 0.0051 16.8 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.1 gi|284163434|ref|YP_003401713.1| - 0.008 16.5 0.0 0.012 15.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|284163434|ref|YP_003401713.1| - 0.028 13.6 0.0 3.3 6.8 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|284163434|ref|YP_003401713.1| - 0.035 13.5 0.0 0.2 11.0 0.0 1.9 2 0 0 2 2 2 0 AAA-like domain SbcCD_C PF13558.1 gi|284163434|ref|YP_003401713.1| - 0.058 13.3 0.0 0.16 11.9 0.0 1.8 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.1 gi|284163434|ref|YP_003401713.1| - 0.095 12.5 0.0 0.19 11.5 0.0 1.7 1 1 0 1 1 1 0 AAA domain ABC2_membrane_2 PF12679.2 gi|284163435|ref|YP_003401714.1| - 2.3e-39 134.9 7.6 2.9e-39 134.6 5.3 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|284163435|ref|YP_003401714.1| - 3e-15 56.0 1.5 3e-15 56.0 1.1 1.5 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|284163435|ref|YP_003401714.1| - 0.00015 21.1 1.6 0.00025 20.3 0.4 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|284163435|ref|YP_003401714.1| - 0.00061 18.9 9.2 0.00061 18.9 6.4 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein DUF4396 PF14342.1 gi|284163435|ref|YP_003401714.1| - 4.4 7.4 8.2 0.27 11.3 1.7 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4396) HMA PF00403.21 gi|284163436|ref|YP_003401715.1| - 2.3e-19 69.3 0.6 2.5e-19 69.1 0.4 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain SIMPL PF04402.9 gi|284163436|ref|YP_003401715.1| - 0.04 13.7 0.0 0.041 13.7 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF541) DUF4162 PF13732.1 gi|284163436|ref|YP_003401715.1| - 0.041 14.3 0.0 0.042 14.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) HTH_24 PF13412.1 gi|284163437|ref|YP_003401716.1| - 8.1e-16 57.1 0.0 1.2e-15 56.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|284163437|ref|YP_003401716.1| - 1.3e-15 56.5 0.3 2.8e-15 55.5 0.2 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|284163437|ref|YP_003401716.1| - 8.8e-09 34.9 0.1 1.4e-08 34.2 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|284163437|ref|YP_003401716.1| - 2.7e-07 30.2 0.1 6.2e-07 29.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|284163437|ref|YP_003401716.1| - 1.5e-06 27.7 0.0 2.3e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|284163437|ref|YP_003401716.1| - 0.00011 21.8 0.0 0.00015 21.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|284163437|ref|YP_003401716.1| - 0.00013 21.5 0.0 0.00021 20.7 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain Arc_trans_TRASH PF08394.5 gi|284163437|ref|YP_003401716.1| - 0.00024 21.2 2.0 0.00036 20.6 1.4 1.3 1 0 0 1 1 1 1 Archaeal TRASH domain TrmB PF01978.14 gi|284163437|ref|YP_003401716.1| - 0.00039 20.0 0.0 0.00068 19.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB YHS PF04945.8 gi|284163437|ref|YP_003401716.1| - 0.00044 20.0 0.5 0.00083 19.1 0.4 1.4 1 0 0 1 1 1 1 YHS domain HTH_27 PF13463.1 gi|284163437|ref|YP_003401716.1| - 0.0022 18.2 0.0 0.0036 17.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain LIM PF00412.17 gi|284163437|ref|YP_003401716.1| - 0.0054 16.7 1.1 0.0095 15.9 0.8 1.4 1 0 0 1 1 1 1 LIM domain zf-FCS PF06467.9 gi|284163437|ref|YP_003401716.1| - 0.014 15.0 2.7 0.022 14.3 1.8 1.3 1 0 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif Fe_dep_repress PF01325.14 gi|284163437|ref|YP_003401716.1| - 0.017 15.0 0.0 0.028 14.3 0.0 1.2 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_1 PF00126.22 gi|284163437|ref|YP_003401716.1| - 0.023 14.4 0.0 0.065 12.9 0.0 1.7 2 0 0 2 2 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Ta0938 PF11494.3 gi|284163437|ref|YP_003401716.1| - 0.026 14.6 0.6 0.061 13.4 0.4 1.5 1 0 0 1 1 1 0 Ta0938 ATPase-cat_bd PF12156.3 gi|284163437|ref|YP_003401716.1| - 0.03 14.8 2.6 0.061 13.8 1.8 1.5 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase HTH_CodY PF08222.6 gi|284163437|ref|YP_003401716.1| - 0.045 13.0 0.0 0.076 12.3 0.0 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_11 PF08279.7 gi|284163437|ref|YP_003401716.1| - 0.057 13.0 0.0 0.095 12.3 0.0 1.3 1 0 0 1 1 1 0 HTH domain HTH_34 PF13601.1 gi|284163437|ref|YP_003401716.1| - 0.066 13.2 0.0 0.1 12.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain LexA_DNA_bind PF01726.11 gi|284163437|ref|YP_003401716.1| - 0.07 12.6 0.0 0.17 11.4 0.0 1.7 1 1 0 1 1 1 0 LexA DNA binding domain HxlR PF01638.12 gi|284163437|ref|YP_003401716.1| - 0.07 12.7 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HypA PF01155.14 gi|284163437|ref|YP_003401716.1| - 0.16 11.6 1.0 0.35 10.5 0.7 1.5 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family RRN7 PF11781.3 gi|284163437|ref|YP_003401716.1| - 0.23 10.9 2.7 9.5 5.8 0.4 2.6 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 CpXC PF14353.1 gi|284163437|ref|YP_003401716.1| - 0.29 11.0 3.7 4.6 7.2 0.3 2.4 1 1 1 2 2 2 0 CpXC protein Hydrolase PF00702.21 gi|284163438|ref|YP_003401717.1| - 1.3e-52 179.3 9.7 2.7e-52 178.2 6.7 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase E1-E2_ATPase PF00122.15 gi|284163438|ref|YP_003401717.1| - 7.3e-51 172.4 0.1 7.3e-51 172.4 0.1 1.6 2 0 0 2 2 2 1 E1-E2 ATPase HMA PF00403.21 gi|284163438|ref|YP_003401717.1| - 3.9e-26 90.9 0.0 1.8e-13 50.4 0.0 2.8 2 0 0 2 2 2 2 Heavy-metal-associated domain HAD PF12710.2 gi|284163438|ref|YP_003401717.1| - 7.2e-19 68.6 0.1 2.3e-18 67.0 0.1 1.9 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|284163438|ref|YP_003401717.1| - 1e-06 28.5 0.8 0.0031 17.1 0.5 2.3 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|284163438|ref|YP_003401717.1| - 0.0098 15.7 1.0 0.078 12.8 0.0 2.9 4 0 0 4 4 4 1 Haloacid dehalogenase-like hydrolase DUF95 PF01944.12 gi|284163439|ref|YP_003401718.1| - 1.3e-25 90.0 15.3 1.3e-25 90.0 10.6 1.5 2 0 0 2 2 2 1 Integral membrane protein DUF95 DUF1218 PF06749.7 gi|284163439|ref|YP_003401718.1| - 0.0059 17.0 0.9 0.9 10.0 0.0 2.6 2 0 0 2 2 2 2 Protein of unknown function (DUF1218) PBP1_TM PF14812.1 gi|284163439|ref|YP_003401718.1| - 0.067 13.4 0.0 0.13 12.6 0.0 1.4 1 0 0 1 1 1 0 Transmembrane domain of transglycosylase PBP1 at N-terminal Amidohydro_1 PF01979.15 gi|284163440|ref|YP_003401719.1| - 8e-44 150.6 4.3 1e-43 150.2 3.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.6 gi|284163440|ref|YP_003401719.1| - 4.2e-12 46.0 8.9 3.4e-11 43.0 2.8 2.6 2 1 0 2 2 2 2 Amidohydrolase family Amidohydro_4 PF13147.1 gi|284163440|ref|YP_003401719.1| - 1.2e-11 45.2 16.0 4e-11 43.4 11.1 1.9 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|284163440|ref|YP_003401719.1| - 1.9e-09 37.1 0.4 1.7e-08 34.1 0.1 2.7 2 0 0 2 2 2 1 Amidohydrolase A_deaminase PF00962.17 gi|284163440|ref|YP_003401719.1| - 0.003 16.5 0.0 0.0058 15.5 0.0 1.5 1 0 0 1 1 1 1 Adenosine/AMP deaminase GST_C_4 PF14834.1 gi|284163440|ref|YP_003401719.1| - 0.059 13.3 0.0 0.17 11.7 0.0 1.8 1 0 0 1 1 1 0 Glutathione S-transferase, C-terminal domain TatD_DNase PF01026.16 gi|284163440|ref|YP_003401719.1| - 0.062 12.4 0.0 0.095 11.8 0.0 1.4 1 0 0 1 1 1 0 TatD related DNase DUF4097 PF13349.1 gi|284163441|ref|YP_003401720.1| - 0.057 12.9 0.9 0.27 10.7 0.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4097) Adhes-Ig_like PF09085.5 gi|284163441|ref|YP_003401720.1| - 0.13 12.1 0.4 1.7 8.4 0.1 2.5 2 0 0 2 2 2 0 Adhesion molecule, immunoglobulin-like Reprolysin_3 PF13582.1 gi|284163441|ref|YP_003401720.1| - 0.8 10.2 7.2 0.28 11.6 2.5 2.0 1 1 1 2 2 2 0 Metallo-peptidase family M12B Reprolysin-like AdoHcyase PF05221.12 gi|284163442|ref|YP_003401721.1| - 1.3e-52 178.4 0.1 1.5e-52 178.1 0.1 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|284163442|ref|YP_003401721.1| - 2.2e-47 160.9 0.8 5.1e-47 159.7 0.2 1.8 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|284163442|ref|YP_003401721.1| - 2.4e-09 36.5 0.1 4.7e-09 35.6 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|284163442|ref|YP_003401721.1| - 6.1e-06 25.7 0.7 1.6e-05 24.3 0.1 1.9 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain TrkA_N PF02254.13 gi|284163442|ref|YP_003401721.1| - 0.0082 16.1 0.1 0.019 14.9 0.0 1.6 1 0 0 1 1 1 1 TrkA-N domain adh_short_C2 PF13561.1 gi|284163442|ref|YP_003401721.1| - 0.02 14.6 0.1 2.1 8.0 0.0 2.3 2 0 0 2 2 2 0 Enoyl-(Acyl carrier protein) reductase ParBc PF02195.13 gi|284163442|ref|YP_003401721.1| - 0.046 13.8 0.1 0.22 11.6 0.0 2.2 2 0 0 2 2 2 0 ParB-like nuclease domain PAS_9 PF13426.1 gi|284163443|ref|YP_003401722.1| - 4.1e-12 46.3 0.0 9.3e-12 45.2 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|284163443|ref|YP_003401722.1| - 1.2e-07 31.7 1.0 2.9e-07 30.4 0.0 2.0 3 0 0 3 3 3 1 PAS fold PAS PF00989.19 gi|284163443|ref|YP_003401722.1| - 1.1e-05 25.1 0.0 1.9e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|284163443|ref|YP_003401722.1| - 0.00088 19.0 0.0 0.002 17.9 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS_9 PF13426.1 gi|284163445|ref|YP_003401724.1| - 3e-127 416.3 13.3 5.4e-18 65.2 0.0 10.4 10 0 0 10 10 10 10 PAS domain PAS_3 PF08447.6 gi|284163445|ref|YP_003401724.1| - 6.6e-112 365.8 8.0 6.5e-18 64.6 0.3 10.5 10 0 0 10 10 10 10 PAS fold PAS_4 PF08448.5 gi|284163445|ref|YP_003401724.1| - 5.9e-102 335.3 51.4 1.8e-16 60.1 0.2 10.8 10 0 0 10 10 10 10 PAS fold PAS PF00989.19 gi|284163445|ref|YP_003401724.1| - 4e-88 290.7 14.3 2.1e-18 66.1 0.0 10.4 10 0 0 10 10 10 8 PAS fold PAS_8 PF13188.1 gi|284163445|ref|YP_003401724.1| - 1.6e-35 119.7 2.7 8e-09 35.0 0.0 6.7 6 0 0 6 6 6 5 PAS domain GAF_2 PF13185.1 gi|284163445|ref|YP_003401724.1| - 9.5e-23 81.3 7.6 4.3e-16 59.7 0.3 4.2 4 0 0 4 4 4 2 GAF domain HTH_10 PF04967.7 gi|284163445|ref|YP_003401724.1| - 2.4e-15 55.8 0.0 5.3e-15 54.7 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain PAS_10 PF13596.1 gi|284163445|ref|YP_003401724.1| - 4e-15 55.9 0.0 0.00034 20.8 0.0 6.5 7 0 0 7 7 7 3 PAS domain GAF_3 PF13492.1 gi|284163445|ref|YP_003401724.1| - 4.5e-12 46.1 10.9 1.6e-05 24.9 0.0 7.0 8 0 0 8 8 8 2 GAF domain HTH_5 PF01022.15 gi|284163445|ref|YP_003401724.1| - 0.0054 16.3 0.0 0.012 15.2 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DUF536 PF04394.9 gi|284163445|ref|YP_003401724.1| - 0.39 10.4 4.1 41 4.0 0.1 3.5 3 0 0 3 3 3 0 Protein of unknown function, DUF536 Abi PF02517.11 gi|284163446|ref|YP_003401725.1| - 2.4e-18 66.0 5.0 2.4e-18 66.0 3.4 2.5 2 1 0 2 2 2 1 CAAX protease self-immunity DUF2663 PF10864.3 gi|284163446|ref|YP_003401725.1| - 0.55 10.4 2.3 21 5.3 0.1 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF2663) DUF1129 PF06570.6 gi|284163446|ref|YP_003401725.1| - 0.7 9.1 14.0 0.18 11.0 3.3 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1129) AzlD PF05437.7 gi|284163446|ref|YP_003401725.1| - 9.6 6.2 20.3 1 9.3 0.8 3.7 3 1 0 3 3 3 0 Branched-chain amino acid transport protein (AzlD) Hjc PF01870.13 gi|284163447|ref|YP_003401726.1| - 1.3e-27 95.2 0.0 1.8e-27 94.7 0.0 1.2 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) TF_Zn_Ribbon PF08271.7 gi|284163448|ref|YP_003401727.1| - 0.0016 17.7 2.2 0.0044 16.3 0.1 2.0 2 0 0 2 2 2 1 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|284163448|ref|YP_003401727.1| - 0.013 15.4 1.1 0.21 11.5 0.8 2.0 1 1 1 2 2 2 0 Zinc ribbon domain zinc_ribbon_4 PF13717.1 gi|284163448|ref|YP_003401727.1| - 0.025 14.2 1.0 0.086 12.5 0.7 1.9 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|284163448|ref|YP_003401727.1| - 0.028 13.9 1.4 0.13 11.8 1.0 2.0 1 1 0 1 1 1 0 zinc-ribbon domain zf-IS66 PF13005.2 gi|284163448|ref|YP_003401727.1| - 0.038 13.9 0.4 2.1 8.3 0.1 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Prim_Zn_Ribbon PF08273.7 gi|284163448|ref|YP_003401727.1| - 0.19 11.8 5.8 0.54 10.3 3.7 1.9 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase A2L_zn_ribbon PF08792.5 gi|284163448|ref|YP_003401727.1| - 0.22 11.0 1.4 0.4 10.2 0.0 1.8 2 0 0 2 2 2 0 A2L zinc ribbon domain DUF1451 PF07295.6 gi|284163448|ref|YP_003401727.1| - 0.26 11.0 0.8 0.53 10.0 0.5 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1451) Zn_Tnp_IS1595 PF12760.2 gi|284163448|ref|YP_003401727.1| - 1.8 8.4 5.7 2.1 8.2 0.6 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Peptidase_M48 PF01435.13 gi|284163449|ref|YP_003401728.1| - 4.9e-21 75.3 4.1 1.2e-13 51.1 0.1 2.6 3 0 0 3 3 3 2 Peptidase family M48 Peptidase_M56 PF05569.6 gi|284163449|ref|YP_003401728.1| - 2.3e-05 23.5 4.4 0.0093 14.9 3.1 2.5 1 1 0 1 1 1 1 BlaR1 peptidase M56 Peptidase_MA_2 PF13485.1 gi|284163449|ref|YP_003401728.1| - 0.00021 21.3 0.2 0.00043 20.3 0.1 1.5 1 0 0 1 1 1 1 Peptidase MA superfamily SprT-like PF10263.4 gi|284163449|ref|YP_003401728.1| - 0.071 12.7 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 SprT-like family Acyl-CoA_dh_1 PF00441.19 gi|284163450|ref|YP_003401729.1| - 5.3e-30 104.4 5.1 8.3e-28 97.3 3.5 2.4 1 1 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|284163450|ref|YP_003401729.1| - 1.8e-14 52.9 0.9 1.2e-13 50.3 0.0 2.7 3 0 0 3 3 3 1 Acyl-CoA dehydrogenase, middle domain PNP_UDP_1 PF01048.15 gi|284163450|ref|YP_003401729.1| - 0.00092 18.2 0.9 0.0019 17.2 0.6 1.5 1 0 0 1 1 1 1 Phosphorylase superfamily Acyl-CoA_dh_2 PF08028.6 gi|284163450|ref|YP_003401729.1| - 0.15 12.3 18.7 0.21 11.8 7.5 3.3 2 2 0 2 2 2 0 Acyl-CoA dehydrogenase, C-terminal domain SWIM PF04434.12 gi|284163451|ref|YP_003401730.1| - 0.0023 17.3 0.1 0.0048 16.3 0.1 1.6 1 0 0 1 1 1 1 SWIM zinc finger ETRAMP PF09716.5 gi|284163452|ref|YP_003401731.1| - 0.16 11.9 1.3 5.2 7.0 0.1 2.1 2 0 0 2 2 2 0 Malarial early transcribed membrane protein (ETRAMP) AA_permease PF00324.16 gi|284163452|ref|YP_003401731.1| - 0.55 8.5 5.1 0.65 8.2 3.5 1.0 1 0 0 1 1 1 0 Amino acid permease ABC2_membrane_4 PF12730.2 gi|284163452|ref|YP_003401731.1| - 0.82 8.7 7.1 0.94 8.5 4.9 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein Tetraspannin PF00335.15 gi|284163453|ref|YP_003401732.1| - 0.11 11.8 0.1 0.14 11.3 0.0 1.2 1 0 0 1 1 1 0 Tetraspanin family DNA_primase_lrg PF04104.9 gi|284163454|ref|YP_003401733.1| - 1.3e-35 122.9 0.0 1.9e-35 122.4 0.0 1.2 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit Abhydrolase_6 PF12697.2 gi|284163455|ref|YP_003401734.1| - 5e-39 134.5 2.7 5.9e-39 134.2 1.9 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|284163455|ref|YP_003401734.1| - 4.9e-27 94.9 0.0 5e-24 85.1 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|284163455|ref|YP_003401734.1| - 6.5e-19 68.1 0.0 1.2e-18 67.3 0.0 1.4 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_4 PF08386.5 gi|284163455|ref|YP_003401734.1| - 1.8e-05 24.5 0.0 3e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 TAP-like protein DLH PF01738.13 gi|284163455|ref|YP_003401734.1| - 0.0004 19.7 0.0 0.0062 15.8 0.0 2.2 2 0 0 2 2 2 1 Dienelactone hydrolase family Peptidase_S9 PF00326.16 gi|284163455|ref|YP_003401734.1| - 0.01 15.0 0.1 0.085 12.0 0.0 2.2 2 0 0 2 2 2 0 Prolyl oligopeptidase family DUF2048 PF09752.4 gi|284163455|ref|YP_003401734.1| - 0.013 14.3 0.6 2.1 7.1 0.0 2.6 2 1 1 3 3 3 0 Uncharacterized conserved protein (DUF2048) Patatin PF01734.17 gi|284163455|ref|YP_003401734.1| - 0.014 15.3 0.4 0.023 14.6 0.3 1.4 1 1 0 1 1 1 0 Patatin-like phospholipase DUF915 PF06028.6 gi|284163455|ref|YP_003401734.1| - 0.017 14.2 0.0 0.047 12.7 0.0 1.7 1 1 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF915) Abhydrolase_3 PF07859.8 gi|284163455|ref|YP_003401734.1| - 0.021 14.3 0.1 0.056 13.0 0.0 1.7 2 1 0 2 2 2 0 alpha/beta hydrolase fold Abhydrolase_2 PF02230.11 gi|284163455|ref|YP_003401734.1| - 0.025 14.0 0.0 0.17 11.2 0.0 2.1 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase LIP PF03583.9 gi|284163455|ref|YP_003401734.1| - 0.043 13.0 0.2 1.8 7.6 0.0 2.1 2 0 0 2 2 2 0 Secretory lipase UPF0227 PF05728.7 gi|284163455|ref|YP_003401734.1| - 0.092 12.4 0.0 1.6 8.4 0.1 2.1 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0227) FSH1 PF03959.8 gi|284163455|ref|YP_003401734.1| - 0.18 11.1 0.0 0.37 10.2 0.0 1.5 2 0 0 2 2 2 0 Serine hydrolase (FSH1) Thioesterase PF00975.15 gi|284163455|ref|YP_003401734.1| - 3.8 7.6 5.9 7.6 6.6 0.3 2.7 2 1 1 3 3 3 0 Thioesterase domain PCNA_N PF00705.13 gi|284163457|ref|YP_003401736.1| - 2.3e-10 40.0 0.1 4.1e-10 39.2 0.1 1.4 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|284163457|ref|YP_003401736.1| - 3.6e-06 26.9 0.0 1.2e-05 25.1 0.0 2.0 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.8 gi|284163457|ref|YP_003401736.1| - 0.02 14.0 0.0 0.032 13.3 0.0 1.4 1 1 0 1 1 1 0 Rad9 UDG PF03167.14 gi|284163459|ref|YP_003401738.1| - 2.3e-30 105.0 0.0 3.1e-30 104.6 0.0 1.2 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily RPT PF13446.1 gi|284163459|ref|YP_003401738.1| - 0.17 11.3 0.3 0.38 10.1 0.0 1.7 2 0 0 2 2 2 0 A repeated domain in UCH-protein FtsJ PF01728.14 gi|284163460|ref|YP_003401739.1| - 1e-52 178.7 0.0 1.3e-52 178.4 0.0 1.1 1 0 0 1 1 1 1 FtsJ-like methyltransferase TRAM PF01938.15 gi|284163460|ref|YP_003401739.1| - 1e-14 54.0 0.9 2.2e-14 52.9 0.2 1.9 2 0 0 2 2 2 1 TRAM domain Methyltransf_31 PF13847.1 gi|284163460|ref|YP_003401739.1| - 2.6e-07 30.3 0.0 4.1e-07 29.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|284163460|ref|YP_003401739.1| - 6.6e-06 26.1 0.0 1.2e-05 25.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|284163460|ref|YP_003401739.1| - 3.4e-05 23.6 0.0 7.7e-05 22.4 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|284163460|ref|YP_003401739.1| - 3.6e-05 24.3 0.0 7e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain CmcI PF04989.7 gi|284163460|ref|YP_003401739.1| - 0.0017 17.6 0.0 0.0026 17.0 0.0 1.2 1 0 0 1 1 1 1 Cephalosporin hydroxylase Methyltransf_11 PF08241.7 gi|284163460|ref|YP_003401739.1| - 0.012 16.1 0.0 0.027 14.9 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain PrmA PF06325.8 gi|284163460|ref|YP_003401739.1| - 0.051 12.6 0.2 0.085 11.9 0.2 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_2 PF00891.13 gi|284163460|ref|YP_003401739.1| - 0.055 12.6 0.0 0.079 12.1 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase Nol1_Nop2_Fmu PF01189.12 gi|284163460|ref|YP_003401739.1| - 0.084 12.2 0.0 0.13 11.5 0.0 1.3 1 0 0 1 1 1 0 NOL1/NOP2/sun family RHH_1 PF01402.16 gi|284163461|ref|YP_003401740.1| - 0.00075 19.2 0.5 0.0029 17.4 0.0 2.0 1 1 1 2 2 2 1 Ribbon-helix-helix protein, copG family INCENP_N PF12178.3 gi|284163461|ref|YP_003401740.1| - 0.21 11.1 0.9 0.66 9.5 0.1 1.9 2 0 0 2 2 2 0 Chromosome passenger complex (CPC) protein INCENP N terminal TatC PF00902.13 gi|284163462|ref|YP_003401741.1| - 8.4e-67 224.7 42.0 7.7e-36 123.5 12.9 2.3 2 0 0 2 2 2 2 Sec-independent protein translocase protein (TatC) TatC PF00902.13 gi|284163463|ref|YP_003401742.1| - 2.3e-38 131.7 15.8 2.7e-38 131.5 10.9 1.0 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) Molybdopterin PF00384.17 gi|284163464|ref|YP_003401743.1| - 4.6e-49 167.3 0.0 5.8e-49 166.9 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|284163464|ref|YP_003401743.1| - 8.4e-15 54.5 0.0 6.4e-14 51.6 0.0 2.3 1 1 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|284163464|ref|YP_003401743.1| - 1.8e-06 27.6 1.6 4.2e-06 26.4 1.1 1.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain MFS_1 PF07690.11 gi|284163465|ref|YP_003401744.1| - 1.8e-36 125.6 85.0 1.9e-29 102.5 36.3 1.8 1 1 1 2 2 2 2 Major Facilitator Superfamily Ferritin PF00210.19 gi|284163466|ref|YP_003401745.1| - 5e-27 94.3 1.4 5.9e-27 94.1 1.0 1.1 1 0 0 1 1 1 1 Ferritin-like domain Osmo_CC PF08946.5 gi|284163466|ref|YP_003401745.1| - 0.073 13.1 1.8 0.41 10.7 0.2 2.5 2 0 0 2 2 2 0 Osmosensory transporter coiled coil Ferritin PF00210.19 gi|284163467|ref|YP_003401746.1| - 1.2e-14 54.3 0.1 1.4e-14 54.0 0.1 1.1 1 0 0 1 1 1 1 Ferritin-like domain Ferritin PF00210.19 gi|284163468|ref|YP_003401747.1| - 5.3e-14 52.1 0.0 8.4e-14 51.5 0.0 1.3 2 0 0 2 2 2 1 Ferritin-like domain NIR_SIR PF01077.17 gi|284163469|ref|YP_003401748.1| - 3.7e-43 146.5 0.0 6.3e-26 90.6 0.0 2.3 2 0 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|284163469|ref|YP_003401748.1| - 8.5e-38 127.8 0.1 4e-18 64.8 0.0 3.3 2 1 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain Abi PF02517.11 gi|284163470|ref|YP_003401749.1| - 2.1e-13 50.1 5.0 2.1e-13 50.1 3.5 2.3 2 1 0 2 2 2 1 CAAX protease self-immunity Asn_synthase PF00733.16 gi|284163472|ref|YP_003401751.1| - 4.3e-12 46.0 1.1 7.5e-12 45.2 0.7 1.5 1 1 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.11 gi|284163472|ref|YP_003401751.1| - 5.4e-11 41.6 0.1 1.9e-07 29.9 0.1 2.2 2 0 0 2 2 2 2 tRNA methyl transferase NAD_synthase PF02540.12 gi|284163472|ref|YP_003401751.1| - 9.7e-10 37.7 0.0 2.4e-09 36.4 0.0 1.6 2 0 0 2 2 2 1 NAD synthase QueC PF06508.8 gi|284163472|ref|YP_003401751.1| - 9.3e-07 28.3 0.0 6.1e-05 22.3 0.0 2.2 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.15 gi|284163472|ref|YP_003401751.1| - 0.00038 20.0 0.0 0.0041 16.6 0.0 2.3 2 0 0 2 2 2 1 PP-loop family Arginosuc_synth PF00764.14 gi|284163472|ref|YP_003401751.1| - 0.0013 17.8 0.1 0.0029 16.7 0.1 1.4 2 0 0 2 2 2 1 Arginosuccinate synthase PAPS_reduct PF01507.14 gi|284163472|ref|YP_003401751.1| - 0.012 15.4 0.0 0.034 13.9 0.0 1.6 1 1 1 2 2 2 0 Phosphoadenosine phosphosulfate reductase family PG_binding_2 PF08823.6 gi|284163472|ref|YP_003401751.1| - 0.048 13.7 0.1 0.43 10.7 0.0 2.4 2 0 0 2 2 2 0 Putative peptidoglycan binding domain DUF208 PF02677.9 gi|284163472|ref|YP_003401751.1| - 0.062 13.0 0.1 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized BCR, COG1636 GFO_IDH_MocA PF01408.17 gi|284163473|ref|YP_003401752.1| - 1.1e-25 90.5 0.0 7.1e-25 87.8 0.0 2.3 3 0 0 3 3 3 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|284163473|ref|YP_003401752.1| - 1.9e-06 27.6 0.0 3.4e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain MtrB PF05440.7 gi|284163474|ref|YP_003401753.1| - 0.16 11.9 0.4 0.41 10.7 0.0 1.9 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase subunit B GCS2 PF04107.8 gi|284163475|ref|YP_003401754.1| - 2e-14 53.4 0.1 2.7e-14 52.9 0.1 1.2 1 0 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) Cupin_2 PF07883.6 gi|284163476|ref|YP_003401755.1| - 1.4e-11 43.7 0.5 2.2e-11 43.0 0.3 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|284163476|ref|YP_003401755.1| - 3.7e-05 23.4 0.1 5.7e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain CENP-C_C PF11699.3 gi|284163476|ref|YP_003401755.1| - 0.0012 18.7 0.0 0.0021 18.0 0.0 1.5 1 1 0 1 1 1 1 Mif2/CENP-C like COX1 PF00115.15 gi|284163477|ref|YP_003401756.1| - 2.4e-45 154.9 45.1 5.9e-45 153.7 31.2 1.6 1 0 0 1 1 1 1 Cytochrome C and Quinol oxidase polypeptide I HATPase_c PF02518.21 gi|284163478|ref|YP_003401757.1| - 5.3e-22 77.6 0.0 1.2e-21 76.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|284163478|ref|YP_003401757.1| - 2e-08 34.0 0.0 4.7e-08 32.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|284163478|ref|YP_003401757.1| - 9.4e-08 31.6 0.0 1.7e-07 30.8 0.0 1.3 1 0 0 1 1 1 1 GHKL domain HisKA PF00512.20 gi|284163478|ref|YP_003401757.1| - 0.00013 21.8 0.3 0.00031 20.6 0.1 1.8 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.1 gi|284163478|ref|YP_003401757.1| - 0.0029 17.2 0.0 0.005 16.4 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPOB_a PF14689.1 gi|284163478|ref|YP_003401757.1| - 0.11 12.1 0.1 0.22 11.0 0.1 1.4 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain CobD_Cbib PF03186.8 gi|284163478|ref|YP_003401757.1| - 0.16 10.9 2.2 0.2 10.6 0.2 1.8 1 1 1 2 2 2 0 CobD/Cbib protein DUF805 PF05656.9 gi|284163479|ref|YP_003401758.1| - 1.2 8.9 8.2 0.86 9.4 4.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF805) FA_desaturase PF00487.19 gi|284163479|ref|YP_003401758.1| - 8.6 5.7 12.4 54 3.1 8.4 2.2 1 1 0 1 1 1 0 Fatty acid desaturase Aminotran_3 PF00202.16 gi|284163480|ref|YP_003401759.1| - 4.6e-68 229.5 0.0 6e-68 229.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|284163480|ref|YP_003401759.1| - 0.015 14.2 0.0 0.021 13.7 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class I and II P-II PF00543.17 gi|284163481|ref|YP_003401760.1| - 3e-35 120.7 0.0 3.4e-35 120.5 0.0 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Ammonium_transp PF00909.16 gi|284163482|ref|YP_003401761.1| - 2.9e-97 325.6 37.0 3.3e-97 325.4 25.7 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family P-II PF00543.17 gi|284163482|ref|YP_003401761.1| - 2.1e-33 114.8 0.0 3.9e-33 113.9 0.0 1.5 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II PsbY PF06298.6 gi|284163482|ref|YP_003401761.1| - 0.87 9.1 5.4 1.3 8.5 0.2 2.5 2 0 0 2 2 2 0 Photosystem II protein Y (PsbY) ALAD PF00490.16 gi|284163483|ref|YP_003401762.1| - 7.3e-140 465.4 0.0 8.9e-140 465.1 0.0 1.1 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase MFS_1 PF07690.11 gi|284163484|ref|YP_003401763.1| - 1.2e-45 155.7 63.6 1e-32 113.2 17.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|284163484|ref|YP_003401763.1| - 9.3e-11 40.7 22.8 3.1e-10 39.0 15.8 2.0 1 1 0 1 1 1 1 MFS/sugar transport protein Sugar_tr PF00083.19 gi|284163484|ref|YP_003401763.1| - 5.7e-06 25.1 38.0 0.00015 20.5 10.9 3.0 2 1 0 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.2 gi|284163484|ref|YP_003401763.1| - 0.059 13.1 10.4 0.88 9.4 0.0 5.0 4 1 1 5 5 5 0 MFS_1 like family OATP PF03137.15 gi|284163484|ref|YP_003401763.1| - 5.2 5.0 8.6 0.11 10.5 0.1 2.3 2 1 1 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family TrmB PF01978.14 gi|284163486|ref|YP_003401765.1| - 1.5e-19 69.4 0.1 3.2e-19 68.4 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.3 gi|284163486|ref|YP_003401765.1| - 0.00063 18.7 0.0 0.001 18.0 0.0 1.3 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB HTH_20 PF12840.2 gi|284163486|ref|YP_003401765.1| - 0.042 13.6 0.0 0.13 12.0 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|284163486|ref|YP_003401765.1| - 0.076 12.7 0.4 0.16 11.6 0.1 1.7 2 0 0 2 2 2 0 MarR family HTH_27 PF13463.1 gi|284163486|ref|YP_003401765.1| - 0.086 13.1 0.0 0.22 11.8 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|284163486|ref|YP_003401765.1| - 0.087 12.9 0.0 0.21 11.7 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator Fe_dep_repress PF01325.14 gi|284163486|ref|YP_003401765.1| - 0.12 12.3 0.0 0.27 11.1 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF2250 PF10007.4 gi|284163486|ref|YP_003401765.1| - 0.13 12.1 0.0 0.27 11.1 0.0 1.6 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Fer4_7 PF12838.2 gi|284163487|ref|YP_003401766.1| - 1.4e-12 47.7 23.2 1.9e-07 31.3 5.6 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|284163487|ref|YP_003401766.1| - 1.7e-12 46.3 14.3 5.2e-07 28.9 3.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|284163487|ref|YP_003401766.1| - 2.8e-11 43.4 5.7 4e-11 43.0 4.0 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|284163487|ref|YP_003401766.1| - 5.9e-09 35.4 14.9 1e-05 25.1 4.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|284163487|ref|YP_003401766.1| - 2.6e-08 33.7 2.5 0.0012 18.7 0.8 2.0 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|284163487|ref|YP_003401766.1| - 5e-08 32.6 18.6 1e-05 25.2 5.5 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|284163487|ref|YP_003401766.1| - 8.4e-08 31.9 6.8 1.4e-07 31.2 4.7 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|284163487|ref|YP_003401766.1| - 1.6e-07 31.5 0.2 0.019 15.2 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|284163487|ref|YP_003401766.1| - 1.9e-06 28.4 5.5 7.7e-05 23.3 0.8 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|284163487|ref|YP_003401766.1| - 3.4e-06 26.6 11.1 0.0021 17.8 2.8 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|284163487|ref|YP_003401766.1| - 4e-06 27.1 3.2 0.00024 21.4 0.7 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|284163487|ref|YP_003401766.1| - 7.2e-06 25.9 8.1 0.00028 20.9 2.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|284163487|ref|YP_003401766.1| - 0.00057 20.2 12.8 0.0025 18.2 3.6 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_13 PF13370.1 gi|284163487|ref|YP_003401766.1| - 0.0013 19.0 14.5 0.013 15.8 10.1 2.5 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|284163487|ref|YP_003401766.1| - 0.0094 16.4 16.2 0.16 12.5 11.2 2.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain PHP PF02811.14 gi|284163489|ref|YP_003401768.1| - 2.1e-09 37.4 0.0 2.7e-09 37.0 0.0 1.3 1 1 0 1 1 1 1 PHP domain PHP_C PF13263.1 gi|284163489|ref|YP_003401768.1| - 0.0026 17.2 0.0 0.0061 16.0 0.0 1.6 1 0 0 1 1 1 1 PHP-associated ADH_N PF08240.7 gi|284163491|ref|YP_003401770.1| - 8.4e-27 93.0 0.7 1.6e-26 92.2 0.5 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|284163491|ref|YP_003401770.1| - 8.9e-25 86.7 0.5 1.4e-24 86.0 0.3 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.16 gi|284163491|ref|YP_003401770.1| - 4.7e-05 23.0 0.4 0.00011 21.8 0.2 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain ELFV_dehydrog PF00208.16 gi|284163491|ref|YP_003401770.1| - 0.0013 18.3 0.4 0.002 17.7 0.2 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Methyltransf_11 PF08241.7 gi|284163491|ref|YP_003401770.1| - 0.0056 17.1 0.1 0.015 15.7 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain 2-Hacid_dh_C PF02826.14 gi|284163491|ref|YP_003401770.1| - 0.0073 15.4 0.0 0.013 14.6 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Methyltransf_18 PF12847.2 gi|284163491|ref|YP_003401770.1| - 0.011 16.3 0.1 0.029 14.9 0.1 1.7 1 0 0 1 1 1 0 Methyltransferase domain TrkA_N PF02254.13 gi|284163491|ref|YP_003401770.1| - 0.066 13.2 0.4 0.12 12.3 0.2 1.4 1 0 0 1 1 1 0 TrkA-N domain GCV_H PF01597.14 gi|284163491|ref|YP_003401770.1| - 0.11 12.1 0.4 0.32 10.6 0.2 1.7 1 0 0 1 1 1 0 Glycine cleavage H-protein CxxCxxCC PF03692.10 gi|284163494|ref|YP_003401773.1| - 1.4e-05 25.4 1.6 0.015 15.7 0.0 2.3 2 0 0 2 2 2 2 Putative zinc- or iron-chelating domain Helicase_C_2 PF13307.1 gi|284163496|ref|YP_003401775.1| - 8.2e-20 71.4 0.0 1.3e-19 70.7 0.0 1.3 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|284163496|ref|YP_003401775.1| - 2.3e-07 30.3 0.0 4.1e-07 29.5 0.0 1.4 1 0 0 1 1 1 1 DEAD_2 ResIII PF04851.10 gi|284163496|ref|YP_003401775.1| - 2.6e-05 24.1 0.0 0.0067 16.2 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_19 PF13245.1 gi|284163496|ref|YP_003401775.1| - 9.2e-05 22.1 0.1 0.00024 20.7 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain DEAD PF00270.24 gi|284163496|ref|YP_003401775.1| - 0.0001 21.8 0.0 0.11 12.0 0.0 2.4 2 0 0 2 2 2 2 DEAD/DEAH box helicase AAA_30 PF13604.1 gi|284163496|ref|YP_003401775.1| - 0.00043 19.9 0.4 0.68 9.4 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|284163496|ref|YP_003401775.1| - 0.00054 20.1 0.0 0.0024 18.0 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|284163496|ref|YP_003401775.1| - 0.004 17.1 0.0 0.02 14.8 0.0 2.3 2 1 0 2 2 2 1 AAA ATPase domain DXP_redisom_C PF08436.7 gi|284163496|ref|YP_003401775.1| - 0.015 15.1 0.0 0.038 13.8 0.0 1.6 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal Mg_chelatase PF01078.16 gi|284163496|ref|YP_003401775.1| - 0.03 13.4 0.0 0.051 12.7 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI PhoH PF02562.11 gi|284163496|ref|YP_003401775.1| - 0.045 12.9 0.0 0.089 12.0 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_10 PF12846.2 gi|284163496|ref|YP_003401775.1| - 0.084 12.2 0.1 3.6 6.9 0.0 2.3 2 0 0 2 2 2 0 AAA-like domain DUF2075 PF09848.4 gi|284163496|ref|YP_003401775.1| - 0.089 11.7 0.0 1.4 7.7 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) PRO8NT PF08082.6 gi|284163496|ref|YP_003401775.1| - 0.11 12.0 0.1 0.25 10.9 0.0 1.5 1 0 0 1 1 1 0 PRO8NT (NUC069), PrP8 N-terminal domain AAA PF00004.24 gi|284163496|ref|YP_003401775.1| - 0.17 12.0 0.0 1.9 8.6 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Met_10 PF02475.11 gi|284163497|ref|YP_003401776.1| - 3.3e-47 160.6 0.0 3.5e-45 154.0 0.0 2.1 2 0 0 2 2 2 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|284163497|ref|YP_003401776.1| - 3.4e-09 36.7 0.8 6.9e-09 35.7 0.1 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|284163497|ref|YP_003401776.1| - 9.3e-08 32.6 0.0 2.1e-07 31.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|284163497|ref|YP_003401776.1| - 6.9e-06 25.7 0.0 1.1e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.9 gi|284163497|ref|YP_003401776.1| - 0.0002 20.8 0.0 0.00062 19.1 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase small domain tRNA_U5-meth_tr PF05958.6 gi|284163497|ref|YP_003401776.1| - 0.0038 15.9 0.0 0.0054 15.4 0.0 1.1 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase DNA_methylase PF00145.12 gi|284163497|ref|YP_003401776.1| - 0.026 13.6 0.0 0.037 13.1 0.0 1.2 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase Cons_hypoth95 PF03602.10 gi|284163497|ref|YP_003401776.1| - 0.075 12.4 0.0 0.18 11.1 0.0 1.6 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_23 PF13489.1 gi|284163497|ref|YP_003401776.1| - 0.078 12.6 0.1 0.41 10.3 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain PrmA PF06325.8 gi|284163497|ref|YP_003401776.1| - 0.14 11.2 0.0 0.23 10.5 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) RrnaAD PF00398.15 gi|284163497|ref|YP_003401776.1| - 0.18 10.8 0.0 0.27 10.2 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase NMD3 PF04981.8 gi|284163498|ref|YP_003401777.1| - 3.8e-67 225.8 0.1 4.6e-67 225.5 0.1 1.1 1 0 0 1 1 1 1 NMD3 family zf-ribbon_3 PF13248.1 gi|284163498|ref|YP_003401777.1| - 0.00051 19.1 2.3 0.7 9.1 0.1 3.4 3 0 0 3 3 3 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|284163498|ref|YP_003401777.1| - 0.0056 16.1 1.6 2.8 7.5 0.1 3.4 3 0 0 3 3 3 1 zinc-ribbon domain GFA PF04828.9 gi|284163498|ref|YP_003401777.1| - 0.017 15.0 1.3 4.1 7.4 0.0 3.4 3 0 0 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme DZR PF12773.2 gi|284163498|ref|YP_003401777.1| - 0.03 14.1 7.3 0.29 10.9 2.8 3.0 1 1 1 2 2 2 0 Double zinc ribbon zf-NADH-PPase PF09297.6 gi|284163498|ref|YP_003401777.1| - 0.039 13.4 4.9 1.1 8.8 0.5 2.8 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain FYVE PF01363.16 gi|284163498|ref|YP_003401777.1| - 0.065 13.1 0.2 1.2 9.0 0.1 2.5 2 0 0 2 2 2 0 FYVE zinc finger Rpr2 PF04032.11 gi|284163498|ref|YP_003401777.1| - 0.12 12.3 0.8 7.6 6.4 0.0 3.2 2 1 1 3 3 3 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain zf-dskA_traR PF01258.12 gi|284163498|ref|YP_003401777.1| - 0.16 11.7 0.2 0.16 11.7 0.1 3.4 4 0 0 4 4 4 0 Prokaryotic dksA/traR C4-type zinc finger Prok-RING_1 PF14446.1 gi|284163498|ref|YP_003401777.1| - 2.2 8.0 4.7 9.4 6.0 1.7 2.6 2 1 0 2 2 2 0 Prokaryotic RING finger family 1 Nudix_N_2 PF14803.1 gi|284163498|ref|YP_003401777.1| - 7.8 6.2 17.9 0.77 9.4 0.1 4.3 5 0 0 5 5 5 0 Nudix N-terminal PQQ_2 PF13360.1 gi|284163499|ref|YP_003401778.1| - 6.4e-23 81.4 9.3 4e-16 59.2 1.8 3.1 1 1 0 2 2 2 2 PQQ-like domain PQQ_3 PF13570.1 gi|284163499|ref|YP_003401778.1| - 2.1e-21 75.5 34.2 7.4e-05 22.8 1.2 8.2 8 1 0 8 8 8 7 PQQ-like domain PQQ PF01011.16 gi|284163499|ref|YP_003401778.1| - 5.5e-07 28.8 12.7 0.032 13.7 0.1 6.6 7 1 1 8 8 8 3 PQQ enzyme repeat Creatininase PF02633.9 gi|284163500|ref|YP_003401779.1| - 6.9e-65 218.4 0.5 7.8e-65 218.2 0.4 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase Peptidase_M48 PF01435.13 gi|284163501|ref|YP_003401780.1| - 4.5e-41 140.8 0.0 6.9e-41 140.2 0.0 1.3 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|284163501|ref|YP_003401780.1| - 2.4e-09 36.6 0.1 1.2e-07 30.9 0.0 2.2 2 0 0 2 2 2 1 BlaR1 peptidase M56 Peptidase_MA_2 PF13485.1 gi|284163501|ref|YP_003401780.1| - 0.021 14.8 0.0 0.043 13.8 0.0 1.5 1 0 0 1 1 1 0 Peptidase MA superfamily SprT-like PF10263.4 gi|284163501|ref|YP_003401780.1| - 0.13 11.9 0.0 0.19 11.3 0.0 1.2 1 0 0 1 1 1 0 SprT-like family RDD PF06271.7 gi|284163501|ref|YP_003401780.1| - 0.64 9.9 8.7 4.8 7.0 1.2 2.4 2 0 0 2 2 2 0 RDD family DUF2207 PF09972.4 gi|284163501|ref|YP_003401780.1| - 1.2 7.6 5.6 7.9 4.9 0.0 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) ABC2_membrane_4 PF12730.2 gi|284163501|ref|YP_003401780.1| - 2.6 7.1 13.5 3.2 6.8 1.4 2.3 2 0 0 2 2 2 0 ABC-2 family transporter protein DUF457 PF04307.9 gi|284163502|ref|YP_003401781.1| - 7.4e-16 57.8 12.2 9.2e-16 57.5 8.4 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) HATPase_c PF02518.21 gi|284163504|ref|YP_003401783.1| - 2.2e-21 75.6 0.0 6.5e-21 74.1 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.1 gi|284163504|ref|YP_003401783.1| - 1.1e-16 61.6 0.1 2.7e-16 60.3 0.0 1.7 1 0 0 1 1 1 1 GAF domain HisKA PF00512.20 gi|284163504|ref|YP_003401783.1| - 2e-11 43.7 0.7 2e-11 43.7 0.5 2.9 3 1 0 3 3 3 1 His Kinase A (phospho-acceptor) domain GAF_3 PF13492.1 gi|284163504|ref|YP_003401783.1| - 1.2e-09 38.3 0.0 2.7e-09 37.1 0.0 1.6 1 0 0 1 1 1 1 GAF domain GAF PF01590.21 gi|284163504|ref|YP_003401783.1| - 1.5e-09 38.1 0.0 3.7e-09 36.8 0.0 1.7 1 0 0 1 1 1 1 GAF domain HATPase_c_3 PF13589.1 gi|284163504|ref|YP_003401783.1| - 0.001 18.7 0.0 0.0019 17.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPOB_a PF14689.1 gi|284163504|ref|YP_003401783.1| - 0.046 13.2 0.1 0.11 12.0 0.0 1.7 2 0 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain PQQ_3 PF13570.1 gi|284163505|ref|YP_003401784.1| - 4.8e-47 156.9 40.8 6.7e-11 42.0 0.8 9.0 8 1 0 8 8 8 7 PQQ-like domain PQQ_2 PF13360.1 gi|284163505|ref|YP_003401784.1| - 1.2e-44 152.6 9.9 4e-23 82.1 1.0 2.5 1 1 1 2 2 2 2 PQQ-like domain PQQ PF01011.16 gi|284163505|ref|YP_003401784.1| - 4.4e-26 89.0 14.6 3.5e-07 29.4 0.2 7.8 9 0 0 9 9 9 5 PQQ enzyme repeat Rad51 PF08423.6 gi|284163506|ref|YP_003401785.1| - 5.3e-79 264.7 0.1 1.9e-48 164.6 0.0 2.0 1 1 1 2 2 2 2 Rad51 HHH_5 PF14520.1 gi|284163506|ref|YP_003401785.1| - 9.8e-12 44.8 0.0 3.5e-11 43.1 0.0 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix domain AAA_25 PF13481.1 gi|284163506|ref|YP_003401785.1| - 6.3e-10 38.7 0.1 1e-09 38.1 0.1 1.3 1 0 0 1 1 1 1 AAA domain HHH PF00633.18 gi|284163506|ref|YP_003401785.1| - 3.4e-08 32.7 0.0 0.00017 21.1 0.0 2.7 2 0 0 2 2 2 2 Helix-hairpin-helix motif RecA PF00154.16 gi|284163506|ref|YP_003401785.1| - 3.5e-07 29.6 0.0 0.018 14.1 0.0 2.1 1 1 0 2 2 2 2 recA bacterial DNA recombination protein HHH_2 PF12826.2 gi|284163506|ref|YP_003401785.1| - 1.6e-05 24.7 0.1 6.2e-05 22.8 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|284163506|ref|YP_003401785.1| - 8e-05 22.4 0.0 0.00029 20.7 0.0 2.0 2 0 0 2 2 2 1 Pathogenicity locus KaiC PF06745.8 gi|284163506|ref|YP_003401785.1| - 0.00034 19.7 0.0 0.0019 17.3 0.0 2.0 2 1 0 2 2 2 1 KaiC DUF4332 PF14229.1 gi|284163506|ref|YP_003401785.1| - 0.0037 17.2 0.0 0.0093 15.9 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) DNA_pol_lambd_f PF10391.4 gi|284163506|ref|YP_003401785.1| - 0.0081 15.6 0.0 0.047 13.2 0.0 2.2 1 1 1 2 2 2 1 Fingers domain of DNA polymerase lambda IMS_HHH PF11798.3 gi|284163506|ref|YP_003401785.1| - 0.021 14.8 0.0 0.11 12.6 0.0 2.2 2 0 0 2 2 2 0 IMS family HHH motif AAA_22 PF13401.1 gi|284163506|ref|YP_003401785.1| - 0.076 13.1 0.3 0.38 10.9 0.2 2.1 1 1 0 1 1 1 0 AAA domain Aminotran_3 PF00202.16 gi|284163508|ref|YP_003401787.1| - 2.5e-93 312.6 0.0 2.9e-93 312.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|284163508|ref|YP_003401787.1| - 0.2 10.5 0.0 0.67 8.8 0.0 1.7 2 0 0 2 2 2 0 Aminotransferase class I and II Pyridoxal_deC PF00282.14 gi|284163509|ref|YP_003401788.1| - 1.4e-62 211.3 0.0 1.8e-62 210.9 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Beta_elim_lyase PF01212.16 gi|284163509|ref|YP_003401788.1| - 0.00022 20.4 0.0 0.0005 19.3 0.0 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|284163509|ref|YP_003401788.1| - 0.0019 16.9 0.0 0.0039 15.9 0.0 1.5 1 0 0 1 1 1 1 Aminotransferase class-V DUF2383 PF09537.5 gi|284163509|ref|YP_003401788.1| - 0.019 15.1 0.0 0.067 13.4 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF2383) IucA_IucC PF04183.7 gi|284163510|ref|YP_003401789.1| - 1.7e-69 233.8 0.0 2.4e-69 233.4 0.0 1.2 1 0 0 1 1 1 1 IucA / IucC family FhuF PF06276.7 gi|284163510|ref|YP_003401789.1| - 1.1e-33 116.4 0.1 2.1e-33 115.5 0.1 1.5 1 0 0 1 1 1 1 Ferric iron reductase FhuF-like transporter Acetyltransf_8 PF13523.1 gi|284163511|ref|YP_003401790.1| - 1.2e-40 138.9 0.1 1.6e-40 138.4 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|284163511|ref|YP_003401790.1| - 1.6e-10 41.3 0.0 3.6e-10 40.1 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|284163511|ref|YP_003401790.1| - 0.059 13.4 0.0 0.13 12.3 0.0 1.5 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|284163511|ref|YP_003401790.1| - 0.071 13.1 0.0 0.1 12.6 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) family K_oxygenase PF13434.1 gi|284163512|ref|YP_003401791.1| - 1.2e-111 372.9 0.0 1.5e-111 372.6 0.0 1.1 1 0 0 1 1 1 1 L-lysine 6-monooxygenase (NADPH-requiring) Pyr_redox_3 PF13738.1 gi|284163512|ref|YP_003401791.1| - 1.7e-11 44.5 0.0 5.1e-10 39.7 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|284163512|ref|YP_003401791.1| - 6.8e-05 22.6 0.7 0.0067 16.2 0.1 3.4 3 1 1 4 4 4 1 FAD-NAD(P)-binding Pyr_redox_2 PF07992.9 gi|284163512|ref|YP_003401791.1| - 0.00033 20.5 0.0 0.0021 17.9 0.0 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase IucA_IucC PF04183.7 gi|284163513|ref|YP_003401792.1| - 2.9e-67 226.5 0.0 3.9e-67 226.1 0.0 1.2 1 0 0 1 1 1 1 IucA / IucC family FhuF PF06276.7 gi|284163513|ref|YP_003401792.1| - 4.3e-38 130.8 0.9 8.3e-38 129.9 0.6 1.4 1 0 0 1 1 1 1 Ferric iron reductase FhuF-like transporter NifU_N PF01592.11 gi|284163514|ref|YP_003401793.1| - 1.3e-28 99.5 0.1 1.4e-28 99.3 0.0 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain SufE PF02657.10 gi|284163514|ref|YP_003401793.1| - 0.14 11.8 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 Fe-S metabolism associated domain NRPS PF08415.5 gi|284163515|ref|YP_003401794.1| - 0.049 13.3 0.4 0.077 12.7 0.3 1.4 1 1 0 1 1 1 0 Nonribosomal peptide synthase HD PF01966.17 gi|284163516|ref|YP_003401795.1| - 1.6e-11 44.2 2.7 3e-11 43.4 1.8 1.4 1 0 0 1 1 1 1 HD domain Acetyltransf_7 PF13508.1 gi|284163517|ref|YP_003401796.1| - 1.6e-08 34.5 0.0 2.1e-08 34.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|284163517|ref|YP_003401796.1| - 4.8e-08 32.9 0.3 6.9e-08 32.4 0.2 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|284163517|ref|YP_003401796.1| - 4.5e-06 26.7 0.0 5.9e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|284163517|ref|YP_003401796.1| - 0.0014 18.5 0.2 0.0047 16.7 0.2 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|284163517|ref|YP_003401796.1| - 0.0083 15.9 0.0 0.011 15.5 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.1 gi|284163517|ref|YP_003401796.1| - 0.013 15.4 0.0 0.027 14.4 0.0 1.5 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|284163517|ref|YP_003401796.1| - 0.017 14.8 0.1 0.025 14.3 0.0 1.2 1 0 0 1 1 1 0 FR47-like protein RibD_C PF01872.12 gi|284163518|ref|YP_003401797.1| - 2.5e-23 82.7 0.1 6e-22 78.2 0.1 2.0 1 1 0 1 1 1 1 RibD C-terminal domain DHFR_1 PF00186.14 gi|284163518|ref|YP_003401797.1| - 9.7e-07 28.4 0.0 1.3e-06 28.1 0.0 1.1 1 0 0 1 1 1 1 Dihydrofolate reductase FIST PF08495.5 gi|284163518|ref|YP_003401797.1| - 0.12 11.5 0.0 0.15 11.2 0.0 1.2 1 0 0 1 1 1 0 FIST N domain Aminotran_5 PF00266.14 gi|284163519|ref|YP_003401798.1| - 5.8e-152 505.7 0.0 6.6e-152 505.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|284163519|ref|YP_003401798.1| - 7.6e-12 44.9 0.2 1.4e-11 44.0 0.2 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|284163519|ref|YP_003401798.1| - 4.2e-08 32.6 0.0 5.8e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|284163519|ref|YP_003401798.1| - 0.00051 18.4 0.0 0.0036 15.6 0.0 2.1 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme SelA PF03841.8 gi|284163519|ref|YP_003401798.1| - 0.0026 16.5 0.0 0.0056 15.4 0.0 1.4 1 1 0 1 1 1 1 L-seryl-tRNA selenium transferase Pyridoxal_deC PF00282.14 gi|284163519|ref|YP_003401798.1| - 0.0067 14.9 0.1 0.014 13.9 0.0 1.4 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain YPEB PF14620.1 gi|284163519|ref|YP_003401798.1| - 0.029 13.3 0.1 0.19 10.7 0.0 1.9 2 0 0 2 2 2 0 YpeB sporulation DUF424 PF04242.8 gi|284163520|ref|YP_003401799.1| - 8.3e-30 102.6 0.2 9.2e-30 102.5 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) TPR_1 PF00515.23 gi|284163521|ref|YP_003401800.1| - 6.8e-20 69.7 8.0 0.00013 21.4 0.0 5.2 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_11 PF13414.1 gi|284163521|ref|YP_003401800.1| - 1.2e-19 69.6 18.7 1.8e-10 40.3 0.9 3.7 3 1 2 5 5 4 4 TPR repeat TPR_2 PF07719.12 gi|284163521|ref|YP_003401800.1| - 1.6e-16 58.7 14.2 0.002 17.8 0.0 5.3 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_12 PF13424.1 gi|284163521|ref|YP_003401800.1| - 3.2e-13 49.4 17.4 7.4e-06 25.8 1.8 3.8 1 1 3 4 4 4 4 Tetratricopeptide repeat TPR_16 PF13432.1 gi|284163521|ref|YP_003401800.1| - 5.8e-13 49.1 15.7 1.1e-05 25.9 0.9 3.6 3 1 1 4 4 3 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|284163521|ref|YP_003401800.1| - 1.3e-11 43.4 6.0 0.0041 16.7 0.3 5.1 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_17 PF13431.1 gi|284163521|ref|YP_003401800.1| - 2.4e-09 36.6 1.4 0.043 14.0 0.0 4.4 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|284163521|ref|YP_003401800.1| - 1.3e-08 34.7 15.8 0.0065 17.0 0.4 5.0 1 1 4 5 5 5 3 Tetratricopeptide repeat TPR_7 PF13176.1 gi|284163521|ref|YP_003401800.1| - 3.5e-08 32.6 14.1 0.0034 17.0 0.1 5.0 4 1 0 4 4 4 3 Tetratricopeptide repeat Apc3 PF12895.2 gi|284163521|ref|YP_003401800.1| - 2e-07 31.0 2.7 0.00058 19.9 0.0 2.4 1 1 1 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.1 gi|284163521|ref|YP_003401800.1| - 1.5e-05 24.7 21.3 0.055 13.4 0.2 4.8 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_9 PF13371.1 gi|284163521|ref|YP_003401800.1| - 3e-05 23.7 11.8 0.055 13.3 0.1 4.0 1 1 3 4 4 4 3 Tetratricopeptide repeat NARP1 PF12569.3 gi|284163521|ref|YP_003401800.1| - 0.00067 18.5 0.5 0.0017 17.2 0.1 1.6 1 1 1 2 2 2 2 NMDA receptor-regulated protein 1 TPR_19 PF14559.1 gi|284163521|ref|YP_003401800.1| - 0.0008 19.6 9.9 0.31 11.4 0.4 3.5 1 1 1 3 3 3 2 Tetratricopeptide repeat TPR_6 PF13174.1 gi|284163521|ref|YP_003401800.1| - 0.001 19.3 4.6 19 5.9 0.0 4.5 4 0 0 4 4 4 0 Tetratricopeptide repeat Apc5 PF12862.2 gi|284163521|ref|YP_003401800.1| - 0.0086 15.8 10.1 0.088 12.6 1.0 4.0 1 1 2 3 3 3 1 Anaphase-promoting complex subunit 5 TPR_4 PF07721.9 gi|284163521|ref|YP_003401800.1| - 0.011 16.0 15.4 0.22 12.0 0.3 4.5 5 0 0 5 5 4 0 Tetratricopeptide repeat Acetyltransf_11 PF13720.1 gi|284163521|ref|YP_003401800.1| - 0.037 14.2 0.4 0.099 12.8 0.3 1.7 1 0 0 1 1 1 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 SPOB_a PF14689.1 gi|284163521|ref|YP_003401800.1| - 0.054 13.0 2.6 6.1 6.4 0.0 2.6 2 0 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain FAT PF02259.18 gi|284163521|ref|YP_003401800.1| - 0.13 11.1 2.2 1.5 7.7 0.9 2.4 1 1 0 1 1 1 0 FAT domain TPR_20 PF14561.1 gi|284163521|ref|YP_003401800.1| - 0.58 10.3 5.1 3.2 7.9 0.7 2.6 1 1 1 2 2 2 0 Tetratricopeptide repeat MIT PF04212.13 gi|284163521|ref|YP_003401800.1| - 5.8 6.8 15.3 11 5.9 0.1 4.4 3 1 1 4 4 4 0 MIT (microtubule interacting and transport) domain ABC_tran PF00005.22 gi|284163522|ref|YP_003401801.1| - 1.8e-27 96.2 0.0 3.1e-27 95.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284163522|ref|YP_003401801.1| - 8.6e-14 52.1 0.0 6e-08 32.9 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|284163522|ref|YP_003401801.1| - 0.0001 21.6 0.0 0.057 12.6 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain DUF4162 PF13732.1 gi|284163522|ref|YP_003401801.1| - 0.00053 20.4 0.0 0.00094 19.6 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_29 PF13555.1 gi|284163522|ref|YP_003401801.1| - 0.0011 18.3 0.0 0.0022 17.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|284163522|ref|YP_003401801.1| - 0.0017 17.8 0.0 0.34 10.2 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain AAA_13 PF13166.1 gi|284163522|ref|YP_003401801.1| - 0.0032 16.0 0.0 0.0057 15.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|284163522|ref|YP_003401801.1| - 0.0036 16.5 0.0 0.0057 15.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|284163522|ref|YP_003401801.1| - 0.006 16.9 0.0 0.01 16.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|284163522|ref|YP_003401801.1| - 0.0076 16.2 0.0 0.012 15.6 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain cobW PF02492.14 gi|284163522|ref|YP_003401801.1| - 0.013 14.9 0.0 0.049 13.0 0.0 1.8 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain MMR_HSR1 PF01926.18 gi|284163522|ref|YP_003401801.1| - 0.026 14.4 0.0 0.064 13.2 0.0 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase ArgK PF03308.11 gi|284163522|ref|YP_003401801.1| - 0.03 13.0 0.0 0.11 11.2 0.0 1.9 2 0 0 2 2 2 0 ArgK protein TrwB_AAD_bind PF10412.4 gi|284163522|ref|YP_003401801.1| - 0.15 10.6 0.0 0.62 8.6 0.0 1.8 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain ABC2_membrane_2 PF12679.2 gi|284163523|ref|YP_003401802.1| - 1.9e-26 92.5 11.2 2.4e-26 92.2 7.8 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|284163523|ref|YP_003401802.1| - 1.3e-08 34.3 21.0 2.5e-08 33.3 14.6 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|284163523|ref|YP_003401802.1| - 1.1e-07 31.2 11.5 1.2e-07 31.1 8.0 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|284163523|ref|YP_003401802.1| - 0.00028 20.2 2.7 0.00028 20.2 1.9 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|284163523|ref|YP_003401802.1| - 0.0063 15.6 10.1 0.0093 15.1 7.0 1.3 1 0 0 1 1 1 1 ABC-2 type transporter Peptidase_U4 PF03419.8 gi|284163523|ref|YP_003401802.1| - 0.16 11.0 3.4 0.044 12.8 0.5 1.4 2 0 0 2 2 2 0 Sporulation factor SpoIIGA ABC2_membrane_2 PF12679.2 gi|284163524|ref|YP_003401803.1| - 5.4e-27 94.3 9.2 1.8e-26 92.6 6.4 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|284163524|ref|YP_003401803.1| - 1.7e-13 50.3 8.7 3e-13 49.4 6.0 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|284163524|ref|YP_003401803.1| - 1.1e-05 24.7 5.0 1.1e-05 24.7 3.5 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|284163524|ref|YP_003401803.1| - 4.8e-05 22.7 1.4 0.00012 21.4 1.0 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein SPC25 PF06703.6 gi|284163524|ref|YP_003401803.1| - 0.013 15.1 0.1 0.02 14.4 0.1 1.4 1 0 0 1 1 1 0 Microsomal signal peptidase 25 kDa subunit (SPC25) CbtB PF09489.5 gi|284163524|ref|YP_003401803.1| - 0.54 10.2 6.4 8.7 6.3 0.9 3.2 2 1 1 3 3 3 0 Probable cobalt transporter subunit (CbtB) TAT_signal PF10518.4 gi|284163525|ref|YP_003401804.1| - 0.018 15.0 5.3 0.029 14.3 3.7 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence YhzD PF14120.1 gi|284163525|ref|YP_003401804.1| - 1.7 8.6 4.5 0.94 9.4 0.3 2.3 2 0 0 2 2 2 0 YhzD-like protein LigT_PEase PF02834.11 gi|284163526|ref|YP_003401805.1| - 1.8e-25 88.7 0.0 1.3e-12 47.5 0.0 2.1 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.1 gi|284163526|ref|YP_003401805.1| - 1.2e-19 70.5 0.1 1.3e-19 70.4 0.1 1.0 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.4 gi|284163526|ref|YP_003401805.1| - 6.7e-10 39.0 0.0 7.6e-10 38.8 0.0 1.1 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain CPDase PF07823.6 gi|284163526|ref|YP_003401805.1| - 0.051 13.0 0.0 0.11 11.9 0.0 1.5 2 0 0 2 2 2 0 Cyclic phosphodiesterase-like protein Ribosomal_L39 PF00832.15 gi|284163528|ref|YP_003401807.1| - 3.5e-21 74.3 8.0 4.1e-21 74.1 5.5 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Ribosomal_L31e PF01198.14 gi|284163529|ref|YP_003401808.1| - 6.3e-24 83.4 0.2 7.4e-24 83.2 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L31e eIF-6 PF01912.13 gi|284163530|ref|YP_003401809.1| - 4.5e-71 238.0 0.2 5.3e-71 237.8 0.1 1.0 1 0 0 1 1 1 1 eIF-6 family ASCH PF04266.9 gi|284163531|ref|YP_003401810.1| - 0.0017 18.7 0.1 0.0023 18.2 0.0 1.3 1 1 0 1 1 1 1 ASCH domain Prefoldin PF02996.12 gi|284163533|ref|YP_003401812.1| - 8.4e-24 83.5 16.5 5.1e-23 81.0 11.4 2.0 1 1 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.15 gi|284163533|ref|YP_003401812.1| - 7e-09 35.4 26.8 2.2e-05 24.1 5.2 2.8 1 1 1 2 2 2 2 Prefoldin subunit NPV_P10 PF05531.7 gi|284163533|ref|YP_003401812.1| - 0.00028 21.0 20.7 0.0056 16.9 4.5 2.5 1 1 0 2 2 2 1 Nucleopolyhedrovirus P10 protein CENP-F_leu_zip PF10473.4 gi|284163533|ref|YP_003401812.1| - 0.00045 20.0 22.3 0.035 13.9 5.8 2.2 2 0 0 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 IncA PF04156.9 gi|284163533|ref|YP_003401812.1| - 0.00046 19.8 31.8 0.027 14.0 8.1 2.1 2 0 0 2 2 2 2 IncA protein Tropomyosin_1 PF12718.2 gi|284163533|ref|YP_003401812.1| - 0.00075 19.3 26.2 0.016 15.0 6.6 2.1 2 0 0 2 2 2 2 Tropomyosin like FliD_C PF07195.7 gi|284163533|ref|YP_003401812.1| - 0.00091 18.5 3.3 0.00091 18.5 2.3 2.1 2 0 0 2 2 2 1 Flagellar hook-associated protein 2 C-terminus Spc7 PF08317.6 gi|284163533|ref|YP_003401812.1| - 0.001 17.7 18.8 0.05 12.2 4.5 2.1 2 0 0 2 2 2 2 Spc7 kinetochore protein DUF869 PF05911.6 gi|284163533|ref|YP_003401812.1| - 0.0014 17.0 12.4 0.0018 16.5 8.6 1.2 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) DUF2730 PF10805.3 gi|284163533|ref|YP_003401812.1| - 0.0026 17.4 10.8 0.22 11.2 1.8 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF2730) DUF607 PF04678.8 gi|284163533|ref|YP_003401812.1| - 0.0029 17.5 9.7 0.0048 16.8 1.8 2.1 1 1 1 2 2 2 1 Protein of unknown function, DUF607 DUF4337 PF14235.1 gi|284163533|ref|YP_003401812.1| - 0.0038 17.0 6.7 0.0038 17.0 4.6 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4337) Mod_r PF07200.8 gi|284163533|ref|YP_003401812.1| - 0.0039 17.1 18.1 0.051 13.4 2.6 2.1 2 0 0 2 2 2 2 Modifier of rudimentary (Mod(r)) protein DUF4140 PF13600.1 gi|284163533|ref|YP_003401812.1| - 0.0042 17.5 20.4 0.21 12.0 5.5 2.7 1 1 1 2 2 2 1 N-terminal domain of unknown function (DUF4140) Ax_dynein_light PF10211.4 gi|284163533|ref|YP_003401812.1| - 0.0042 16.9 19.9 0.021 14.6 4.5 2.1 2 0 0 2 2 2 1 Axonemal dynein light chain FliJ PF02050.11 gi|284163533|ref|YP_003401812.1| - 0.0062 16.5 6.7 0.0062 16.5 4.6 2.2 1 1 1 2 2 2 1 Flagellar FliJ protein GAS PF13851.1 gi|284163533|ref|YP_003401812.1| - 0.0093 15.1 17.6 0.098 11.8 3.8 2.1 2 0 0 2 2 2 2 Growth-arrest specific micro-tubule binding Fib_alpha PF08702.5 gi|284163533|ref|YP_003401812.1| - 0.0093 16.0 17.2 0.33 11.0 4.4 2.3 1 1 0 2 2 2 2 Fibrinogen alpha/beta chain family SlyX PF04102.7 gi|284163533|ref|YP_003401812.1| - 0.011 16.1 32.9 0.023 15.0 10.4 3.1 2 1 1 3 3 3 0 SlyX APG6 PF04111.7 gi|284163533|ref|YP_003401812.1| - 0.012 14.7 25.9 0.045 12.7 6.4 2.0 2 0 0 2 2 2 0 Autophagy protein Apg6 Mnd1 PF03962.10 gi|284163533|ref|YP_003401812.1| - 0.014 15.0 20.5 0.25 10.9 4.1 2.2 2 0 0 2 2 2 0 Mnd1 family COG5 PF10392.4 gi|284163533|ref|YP_003401812.1| - 0.019 14.9 6.8 0.71 9.8 0.4 2.2 2 0 0 2 2 2 0 Golgi transport complex subunit 5 TBPIP PF07106.8 gi|284163533|ref|YP_003401812.1| - 0.019 14.5 25.1 0.28 10.6 6.0 2.1 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) COG2 PF06148.6 gi|284163533|ref|YP_003401812.1| - 0.02 14.7 10.7 0.46 10.3 1.5 2.3 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Syntaxin_2 PF14523.1 gi|284163533|ref|YP_003401812.1| - 0.021 14.8 10.5 0.11 12.4 1.0 2.3 2 0 0 2 2 2 0 Syntaxin-like protein Lzipper-MIP1 PF14389.1 gi|284163533|ref|YP_003401812.1| - 0.023 14.8 6.4 0.023 14.8 4.4 2.5 2 1 0 2 2 2 0 Leucine-zipper of ternary complex factor MIP1 Tektin PF03148.9 gi|284163533|ref|YP_003401812.1| - 0.023 13.2 15.6 0.043 12.3 2.3 2.2 2 0 0 2 2 2 0 Tektin family ADIP PF11559.3 gi|284163533|ref|YP_003401812.1| - 0.023 14.5 21.1 0.044 13.6 4.1 2.1 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding Tnp_P_element PF12017.3 gi|284163533|ref|YP_003401812.1| - 0.025 13.8 10.1 0.026 13.7 0.1 2.0 1 1 1 2 2 2 0 Transposase protein DUF342 PF03961.8 gi|284163533|ref|YP_003401812.1| - 0.027 12.8 15.8 0.078 11.3 3.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF342) FlaC_arch PF05377.6 gi|284163533|ref|YP_003401812.1| - 0.032 14.1 19.2 0.88 9.5 3.4 3.7 3 1 1 4 4 4 0 Flagella accessory protein C (FlaC) Spc24 PF08286.6 gi|284163533|ref|YP_003401812.1| - 0.033 13.8 23.8 0.43 10.2 4.0 2.2 2 1 0 2 2 2 0 Spc24 subunit of Ndc80 DUF972 PF06156.8 gi|284163533|ref|YP_003401812.1| - 0.037 14.3 17.5 0.34 11.2 4.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF972) TMF_DNA_bd PF12329.3 gi|284163533|ref|YP_003401812.1| - 0.038 13.7 27.0 0.088 12.6 6.5 2.4 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding AAA_13 PF13166.1 gi|284163533|ref|YP_003401812.1| - 0.043 12.2 20.5 0.076 11.4 5.1 1.9 1 1 0 2 2 2 0 AAA domain Lebercilin PF15619.1 gi|284163533|ref|YP_003401812.1| - 0.049 13.0 14.9 0.11 11.9 0.7 2.1 2 0 0 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease BicD PF09730.4 gi|284163533|ref|YP_003401812.1| - 0.056 11.7 18.5 0.067 11.5 12.8 1.0 1 0 0 1 1 1 0 Microtubule-associated protein Bicaudal-D Syntaxin PF00804.20 gi|284163533|ref|YP_003401812.1| - 0.058 13.5 17.4 0.6 10.3 4.3 2.4 2 0 0 2 2 2 0 Syntaxin Fmp27_WPPW PF10359.4 gi|284163533|ref|YP_003401812.1| - 0.069 11.5 12.3 0.14 10.5 1.9 2.0 2 0 0 2 2 2 0 RNA pol II promoter Fmp27 protein domain Laminin_II PF06009.7 gi|284163533|ref|YP_003401812.1| - 0.072 12.8 13.4 0.83 9.4 1.5 2.2 2 0 0 2 2 2 0 Laminin Domain II Rootletin PF15035.1 gi|284163533|ref|YP_003401812.1| - 0.086 12.8 15.7 0.12 12.3 10.9 1.2 1 0 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion Nsp1_C PF05064.8 gi|284163533|ref|YP_003401812.1| - 0.091 12.4 25.7 0.77 9.4 5.8 2.1 2 0 0 2 2 2 0 Nsp1-like C-terminal region DUF812 PF05667.6 gi|284163533|ref|YP_003401812.1| - 0.091 11.2 23.3 0.25 9.8 4.7 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF812) DUF1664 PF07889.7 gi|284163533|ref|YP_003401812.1| - 0.093 12.5 14.2 0.33 10.7 2.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) Phage_GP20 PF06810.6 gi|284163533|ref|YP_003401812.1| - 0.13 11.7 26.0 0.5 9.7 7.3 2.2 2 0 0 2 2 2 0 Phage minor structural protein GP20 TraF_2 PF13729.1 gi|284163533|ref|YP_003401812.1| - 0.13 11.0 9.4 0.96 8.2 0.1 2.0 1 1 1 2 2 2 0 F plasmid transfer operon, TraF, protein MscS_porin PF12795.2 gi|284163533|ref|YP_003401812.1| - 0.13 11.5 29.0 0.61 9.3 6.4 2.1 2 0 0 2 2 2 0 Mechanosensitive ion channel porin domain DUF4618 PF15397.1 gi|284163533|ref|YP_003401812.1| - 0.13 11.5 20.1 0.38 10.0 3.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) PspA_IM30 PF04012.7 gi|284163533|ref|YP_003401812.1| - 0.15 11.4 21.9 0.087 12.1 5.1 2.2 2 0 0 2 2 2 0 PspA/IM30 family BLOC1_2 PF10046.4 gi|284163533|ref|YP_003401812.1| - 0.17 12.0 24.1 0.33 11.1 3.9 3.1 2 2 1 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 COG6 PF06419.6 gi|284163533|ref|YP_003401812.1| - 0.17 9.9 14.6 0.64 8.0 2.1 2.0 2 0 0 2 2 2 0 Conserved oligomeric complex COG6 Hemerythrin PF01814.18 gi|284163533|ref|YP_003401812.1| - 0.18 11.9 9.5 0.48 10.5 0.4 2.4 2 1 0 2 2 2 0 Hemerythrin HHE cation binding domain ORF6C PF10552.4 gi|284163533|ref|YP_003401812.1| - 0.19 11.4 14.7 0.27 10.9 2.8 2.4 2 0 0 2 2 2 0 ORF6C domain Hemagglutinin PF00509.13 gi|284163533|ref|YP_003401812.1| - 0.21 9.7 11.1 0.67 8.0 0.7 2.0 2 0 0 2 2 2 0 Haemagglutinin ATG16 PF08614.6 gi|284163533|ref|YP_003401812.1| - 0.21 11.3 17.5 0.15 11.8 2.4 2.1 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) DUF4515 PF14988.1 gi|284163533|ref|YP_003401812.1| - 0.23 11.1 22.3 0.14 11.7 4.4 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4515) Allexi_40kDa PF05549.6 gi|284163533|ref|YP_003401812.1| - 0.23 10.6 10.2 0.43 9.8 1.2 2.0 2 0 0 2 2 2 0 Allexivirus 40kDa protein DivIVA PF05103.8 gi|284163533|ref|YP_003401812.1| - 0.24 11.4 22.0 0.91 9.5 5.8 2.1 2 0 0 2 2 2 0 DivIVA protein ALIX_LYPXL_bnd PF13949.1 gi|284163533|ref|YP_003401812.1| - 0.24 10.2 19.3 0.21 10.4 5.2 2.1 2 0 0 2 2 2 0 ALIX V-shaped domain binding to HIV DUF948 PF06103.6 gi|284163533|ref|YP_003401812.1| - 0.25 11.2 14.1 1.6 8.6 2.3 2.4 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) TraB PF01963.12 gi|284163533|ref|YP_003401812.1| - 0.28 10.6 17.4 0.51 9.7 2.1 2.5 1 1 2 3 3 3 0 TraB family DUF4201 PF13870.1 gi|284163533|ref|YP_003401812.1| - 0.29 10.5 16.1 0.83 9.0 2.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4201) DUF4446 PF14584.1 gi|284163533|ref|YP_003401812.1| - 0.29 10.9 14.0 0.31 10.8 3.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4446) Uds1 PF15456.1 gi|284163533|ref|YP_003401812.1| - 0.31 11.0 15.5 1.9 8.4 10.7 2.2 1 1 0 1 1 1 0 Up-regulated During Septation Corona_S2 PF01601.11 gi|284163533|ref|YP_003401812.1| - 0.31 9.0 5.6 0.083 10.9 0.9 1.8 1 1 1 2 2 2 0 Coronavirus S2 glycoprotein Baculo_PEP_C PF04513.7 gi|284163533|ref|YP_003401812.1| - 0.31 10.8 16.8 1.3 8.7 2.9 2.5 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Cytochrom_C_2 PF01322.15 gi|284163533|ref|YP_003401812.1| - 0.32 11.5 8.6 0.27 11.7 2.3 2.1 1 1 1 2 2 2 0 Cytochrome C' Reo_sigmaC PF04582.7 gi|284163533|ref|YP_003401812.1| - 0.32 10.1 8.0 2.8 7.0 1.0 2.0 1 1 0 2 2 2 0 Reovirus sigma C capsid protein Cep57_MT_bd PF06657.8 gi|284163533|ref|YP_003401812.1| - 0.34 10.8 18.3 1.5 8.7 2.2 2.4 2 0 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 DUF3450 PF11932.3 gi|284163533|ref|YP_003401812.1| - 0.36 10.0 25.4 0.13 11.5 6.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) Myosin_tail_1 PF01576.14 gi|284163533|ref|YP_003401812.1| - 0.37 8.4 23.1 0.14 9.8 6.5 2.0 2 0 0 2 2 2 0 Myosin tail T2SF PF00482.18 gi|284163533|ref|YP_003401812.1| - 0.38 10.6 2.9 3.3 7.6 0.3 2.1 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein F Dor1 PF04124.7 gi|284163533|ref|YP_003401812.1| - 0.39 9.1 12.3 0.38 9.1 2.1 2.1 2 0 0 2 2 2 0 Dor1-like family FH2 PF02181.18 gi|284163533|ref|YP_003401812.1| - 0.41 9.4 11.7 0.52 9.1 2.1 2.3 2 0 0 2 2 2 0 Formin Homology 2 Domain EMP24_GP25L PF01105.19 gi|284163533|ref|YP_003401812.1| - 0.41 10.3 13.8 0.12 12.0 1.1 2.2 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD bZIP_1 PF00170.16 gi|284163533|ref|YP_003401812.1| - 0.41 10.6 17.0 0.17 11.8 0.9 3.1 2 1 1 3 3 3 0 bZIP transcription factor DUF3584 PF12128.3 gi|284163533|ref|YP_003401812.1| - 0.41 7.9 20.8 0.58 7.4 14.4 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3584) DivIC PF04977.10 gi|284163533|ref|YP_003401812.1| - 0.44 10.0 27.1 1.2 8.6 5.5 3.3 2 1 1 3 3 3 0 Septum formation initiator DUF2937 PF11157.3 gi|284163533|ref|YP_003401812.1| - 0.44 9.8 14.3 0.39 10.0 2.9 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2937) Sipho_Gp157 PF05565.6 gi|284163533|ref|YP_003401812.1| - 0.45 10.0 12.8 0.14 11.7 3.3 2.2 2 0 0 2 2 2 0 Siphovirus Gp157 MAD PF05557.8 gi|284163533|ref|YP_003401812.1| - 0.48 8.4 17.5 0.058 11.4 2.1 2.0 2 0 0 2 2 2 0 Mitotic checkpoint protein Herpes_UL6 PF01763.11 gi|284163533|ref|YP_003401812.1| - 0.48 8.5 9.0 1.1 7.3 2.4 2.0 2 0 0 2 2 2 0 Herpesvirus UL6 like WXG100 PF06013.7 gi|284163533|ref|YP_003401812.1| - 0.5 10.4 19.2 3 7.9 2.4 2.8 2 1 0 2 2 2 0 Proteins of 100 residues with WXG Prefoldin_3 PF13758.1 gi|284163533|ref|YP_003401812.1| - 0.5 10.1 11.3 13 5.6 7.4 2.6 1 1 0 1 1 1 0 Prefoldin subunit YlqD PF11068.3 gi|284163533|ref|YP_003401812.1| - 0.56 10.2 26.1 1.7 8.7 7.1 2.5 2 0 0 2 2 2 0 YlqD protein DUF1759 PF03564.10 gi|284163533|ref|YP_003401812.1| - 0.59 9.9 7.2 3.5 7.4 0.5 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1759) Syntaxin-6_N PF09177.6 gi|284163533|ref|YP_003401812.1| - 0.61 10.5 17.7 0.075 13.4 2.0 2.7 2 1 1 3 3 2 0 Syntaxin 6, N-terminal DUF3251 PF11622.3 gi|284163533|ref|YP_003401812.1| - 0.61 9.4 11.4 0.27 10.6 0.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3251) Vps51 PF08700.6 gi|284163533|ref|YP_003401812.1| - 0.63 9.9 11.7 0.87 9.4 1.4 3.2 2 2 1 3 3 3 0 Vps51/Vps67 DUF904 PF06005.7 gi|284163533|ref|YP_003401812.1| - 0.63 10.3 30.4 0.31 11.3 8.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF904) LXG PF04740.7 gi|284163533|ref|YP_003401812.1| - 0.68 9.6 18.4 2.7 7.7 2.8 2.9 2 1 1 3 3 3 0 LXG domain of WXG superfamily Cob_adeno_trans PF01923.13 gi|284163533|ref|YP_003401812.1| - 0.72 9.6 14.6 0.85 9.3 4.9 2.7 1 1 1 2 2 2 0 Cobalamin adenosyltransferase MIS13 PF08202.6 gi|284163533|ref|YP_003401812.1| - 0.77 8.7 10.1 1 8.3 7.0 1.2 1 0 0 1 1 1 0 Mis12-Mtw1 protein family DUF641 PF04859.7 gi|284163533|ref|YP_003401812.1| - 0.79 9.4 13.4 0.75 9.5 2.1 2.3 2 0 0 2 2 2 0 Plant protein of unknown function (DUF641) HR1 PF02185.11 gi|284163533|ref|YP_003401812.1| - 0.79 9.5 22.2 1.1 9.0 4.4 2.6 2 0 0 2 2 2 0 Hr1 repeat GCN5L1 PF06320.8 gi|284163533|ref|YP_003401812.1| - 0.84 9.4 9.3 0.15 11.8 2.2 2.2 2 0 0 2 2 2 0 GCN5-like protein 1 (GCN5L1) GvpK PF05121.7 gi|284163533|ref|YP_003401812.1| - 0.85 9.4 19.1 0.34 10.7 2.8 2.4 2 0 0 2 2 2 0 Gas vesicle protein K Sas10_Utp3 PF04000.10 gi|284163533|ref|YP_003401812.1| - 0.95 9.7 13.3 3 8.0 2.3 2.6 3 0 0 3 3 2 0 Sas10/Utp3/C1D family Lge1 PF11488.3 gi|284163533|ref|YP_003401812.1| - 0.97 9.6 18.8 2.3 8.4 2.2 2.7 2 1 1 3 3 3 0 Transcriptional regulatory protein LGE1 CorA PF01544.13 gi|284163533|ref|YP_003401812.1| - 0.99 8.3 17.7 6.4 5.7 12.2 2.0 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF724 PF05266.9 gi|284163533|ref|YP_003401812.1| - 1 8.9 18.2 2.1 7.9 4.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF724) Occludin_ELL PF07303.8 gi|284163533|ref|YP_003401812.1| - 1.1 10.0 14.6 3.3 8.4 1.5 2.4 2 1 0 2 2 2 0 Occludin homology domain Med4 PF10018.4 gi|284163533|ref|YP_003401812.1| - 1.3 8.3 17.6 3 7.2 2.4 2.4 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 GrpE PF01025.14 gi|284163533|ref|YP_003401812.1| - 1.3 8.5 18.5 0.98 8.9 5.1 2.2 2 0 0 2 2 2 0 GrpE TPR_MLP1_2 PF07926.7 gi|284163533|ref|YP_003401812.1| - 1.3 8.7 26.3 22 4.7 15.4 2.5 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein DUF2400 PF09674.5 gi|284163533|ref|YP_003401812.1| - 1.3 8.6 6.7 7.5 6.1 0.4 2.0 1 1 0 2 2 2 0 Protein of unknown function (DUF2400) AAA_27 PF13514.1 gi|284163533|ref|YP_003401812.1| - 1.3 6.5 20.9 2.6 5.5 14.5 1.4 1 1 0 1 1 1 0 AAA domain Synaptobrevin PF00957.16 gi|284163533|ref|YP_003401812.1| - 1.4 8.6 18.5 0.15 11.7 4.0 3.1 2 1 1 3 3 3 0 Synaptobrevin Spectrin PF00435.16 gi|284163533|ref|YP_003401812.1| - 1.4 9.2 22.4 3.1 8.1 4.2 2.3 2 0 0 2 2 2 0 Spectrin repeat NTR2 PF15458.1 gi|284163533|ref|YP_003401812.1| - 1.4 8.0 23.7 1.7 7.8 3.9 2.3 2 0 0 2 2 2 0 Nineteen complex-related protein 2 BCAS2 PF05700.6 gi|284163533|ref|YP_003401812.1| - 1.5 8.2 20.7 1.2 8.5 4.9 2.2 2 0 0 2 2 2 0 Breast carcinoma amplified sequence 2 (BCAS2) Vfa1 PF08432.5 gi|284163533|ref|YP_003401812.1| - 1.5 8.8 12.5 3.5 7.5 8.7 1.6 1 1 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 Atg14 PF10186.4 gi|284163533|ref|YP_003401812.1| - 1.5 7.6 17.7 0.9 8.4 3.6 2.0 2 0 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 DUF2968 PF11180.3 gi|284163533|ref|YP_003401812.1| - 1.6 8.0 26.1 2.1 7.7 7.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) Seryl_tRNA_N PF02403.17 gi|284163533|ref|YP_003401812.1| - 1.6 8.7 19.5 3.6 7.6 2.6 2.6 2 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain CASP_C PF08172.7 gi|284163533|ref|YP_003401812.1| - 1.6 7.6 17.4 4.4 6.2 12.0 1.8 1 1 0 1 1 1 0 CASP C terminal DUF3373 PF11853.3 gi|284163533|ref|YP_003401812.1| - 1.7 7.0 19.4 0.43 9.0 3.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3373) Muted PF14942.1 gi|284163533|ref|YP_003401812.1| - 1.7 8.4 15.0 2.7 7.8 2.4 2.1 2 0 0 2 2 2 0 Organelle biogenesis, Muted-like protein DOR PF14839.1 gi|284163533|ref|YP_003401812.1| - 1.8 8.2 13.1 0.12 12.0 2.1 2.0 2 0 0 2 2 2 0 DOR family Cluap1 PF10234.4 gi|284163533|ref|YP_003401812.1| - 2 7.5 16.0 0.47 9.6 3.0 2.1 2 0 0 2 2 2 0 Clusterin-associated protein-1 DUF496 PF04363.7 gi|284163533|ref|YP_003401812.1| - 2.1 8.2 6.8 3.7 7.4 0.7 2.8 2 1 1 3 3 2 0 Protein of unknown function (DUF496) EzrA PF06160.7 gi|284163533|ref|YP_003401812.1| - 2.2 6.3 24.7 2 6.5 5.4 2.0 1 1 0 2 2 2 0 Septation ring formation regulator, EzrA DUF4200 PF13863.1 gi|284163533|ref|YP_003401812.1| - 2.2 8.2 27.4 0.66 9.9 5.7 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4200) ATP-synt_D PF01813.12 gi|284163533|ref|YP_003401812.1| - 2.2 7.7 10.3 1.8 8.0 1.7 2.2 2 1 0 2 2 2 0 ATP synthase subunit D Osmo_CC PF08946.5 gi|284163533|ref|YP_003401812.1| - 2.3 8.3 32.3 1.2 9.1 7.2 4.3 3 2 0 3 3 3 0 Osmosensory transporter coiled coil DUF3552 PF12072.3 gi|284163533|ref|YP_003401812.1| - 2.3 7.3 25.9 0.35 10.0 7.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3552) Sec8_exocyst PF04048.9 gi|284163533|ref|YP_003401812.1| - 2.4 7.8 11.5 0.81 9.3 2.1 2.2 2 0 0 2 2 2 0 Sec8 exocyst complex component specific domain HAUS6_N PF14661.1 gi|284163533|ref|YP_003401812.1| - 2.4 7.4 19.4 2 7.7 6.0 2.0 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus Fzo_mitofusin PF04799.8 gi|284163533|ref|YP_003401812.1| - 2.6 7.3 15.4 1.1 8.6 2.8 2.2 2 0 0 2 2 2 0 fzo-like conserved region PilJ PF13675.1 gi|284163533|ref|YP_003401812.1| - 2.7 8.3 16.8 5.6 7.3 4.5 2.3 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term MtrB PF05440.7 gi|284163533|ref|YP_003401812.1| - 2.8 8.0 6.9 3.7 7.6 0.3 2.5 2 2 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase subunit B DUF892 PF05974.7 gi|284163533|ref|YP_003401812.1| - 3 7.6 19.1 0.24 11.2 2.6 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF892) DUF4164 PF13747.1 gi|284163533|ref|YP_003401812.1| - 3 8.0 22.8 0.39 10.8 3.1 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4164) T2SM PF04612.7 gi|284163533|ref|YP_003401812.1| - 3.1 7.5 17.4 3.5 7.3 2.2 2.1 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein M DUF2130 PF09903.4 gi|284163533|ref|YP_003401812.1| - 3.1 6.4 12.0 0.63 8.7 1.6 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2130) MutS_IV PF05190.13 gi|284163533|ref|YP_003401812.1| - 3.2 7.9 12.9 7.9 6.7 1.7 3.1 2 1 2 4 4 3 0 MutS family domain IV Transposase_22 PF02994.9 gi|284163533|ref|YP_003401812.1| - 3.3 6.1 15.5 1.3 7.4 2.0 2.0 1 1 1 2 2 2 0 L1 transposable element DUF2353 PF09789.4 gi|284163533|ref|YP_003401812.1| - 3.4 6.8 15.0 6.7 5.8 2.8 1.9 1 1 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) Cauli_AT PF03233.8 gi|284163533|ref|YP_003401812.1| - 3.4 7.3 9.7 6.2 6.4 1.2 2.2 2 0 0 2 2 2 0 Aphid transmission protein HalX PF08663.5 gi|284163533|ref|YP_003401812.1| - 3.5 7.6 20.8 2.1 8.3 5.4 3.5 2 2 1 3 3 3 0 HalX domain DegS PF05384.6 gi|284163533|ref|YP_003401812.1| - 3.5 6.8 14.2 3.2 6.9 2.4 2.3 2 0 0 2 2 2 0 Sensor protein DegS Tup_N PF08581.5 gi|284163533|ref|YP_003401812.1| - 3.5 7.8 20.3 1.9 8.7 4.8 2.5 2 0 0 2 2 2 0 Tup N-terminal Snf7 PF03357.16 gi|284163533|ref|YP_003401812.1| - 3.6 6.9 24.1 1.6 8.0 2.5 2.7 2 1 1 3 3 2 0 Snf7 L31 PF09784.4 gi|284163533|ref|YP_003401812.1| - 3.9 7.5 10.3 1.9 8.6 0.5 2.6 2 1 1 3 3 3 0 Mitochondrial ribosomal protein L31 DUF3847 PF12958.2 gi|284163533|ref|YP_003401812.1| - 4 7.2 21.6 3.5 7.4 4.0 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF3847) Bap31 PF05529.7 gi|284163533|ref|YP_003401812.1| - 4.2 6.7 17.3 0.66 9.4 3.1 2.1 2 0 0 2 2 2 0 B-cell receptor-associated protein 31-like PP2C_C PF07830.8 gi|284163533|ref|YP_003401812.1| - 4.2 7.5 10.4 0.74 9.9 0.2 2.5 2 1 0 2 2 2 0 Protein serine/threonine phosphatase 2C, C-terminal domain Tmemb_cc2 PF10267.4 gi|284163533|ref|YP_003401812.1| - 4.2 5.8 18.0 2.4 6.6 4.5 2.1 2 0 0 2 2 2 0 Predicted transmembrane and coiled-coil 2 protein MtrG PF04210.8 gi|284163533|ref|YP_003401812.1| - 4.3 7.0 6.8 18 5.0 0.1 2.6 2 1 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G Viral_P18 PF04521.8 gi|284163533|ref|YP_003401812.1| - 4.4 6.7 17.6 2.6 7.5 2.1 2.9 2 1 1 3 3 3 0 ssRNA positive strand viral 18kD cysteine rich protein ERM PF00769.14 gi|284163533|ref|YP_003401812.1| - 4.4 6.7 27.6 1.3 8.4 9.2 2.1 1 1 1 2 2 2 0 Ezrin/radixin/moesin family MCPsignal PF00015.16 gi|284163533|ref|YP_003401812.1| - 4.6 6.7 16.0 27 4.1 11.0 2.0 1 1 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Sulfatase_C PF14707.1 gi|284163533|ref|YP_003401812.1| - 4.8 7.4 9.8 11 6.2 0.7 2.1 2 0 0 2 2 2 0 C-terminal region of aryl-sulfatase STAT_alpha PF01017.15 gi|284163533|ref|YP_003401812.1| - 5.2 6.7 20.5 4.4 6.9 5.5 2.2 2 0 0 2 2 2 0 STAT protein, all-alpha domain SPT16 PF08644.6 gi|284163533|ref|YP_003401812.1| - 5.7 6.7 10.8 5.2 6.9 0.4 2.1 2 0 0 2 2 2 0 FACT complex subunit (SPT16/CDC68) GLE1 PF07817.8 gi|284163533|ref|YP_003401812.1| - 6.5 5.6 10.1 3.1 6.6 1.2 2.1 2 0 0 2 2 2 0 GLE1-like protein V_ATPase_I PF01496.14 gi|284163533|ref|YP_003401812.1| - 6.6 4.4 21.2 1.3 6.7 5.2 2.0 1 1 0 2 2 2 0 V-type ATPase 116kDa subunit family DASH_Dad2 PF08654.5 gi|284163533|ref|YP_003401812.1| - 6.6 6.7 14.4 3.6 7.6 0.7 2.7 2 1 0 2 2 2 0 DASH complex subunit Dad2 DASH_Dad3 PF08656.5 gi|284163533|ref|YP_003401812.1| - 6.9 6.4 13.1 2.5 7.8 1.7 2.7 2 1 0 2 2 2 0 DASH complex subunit Dad3 XhlA PF10779.4 gi|284163533|ref|YP_003401812.1| - 7.4 6.5 25.0 2.1 8.3 3.2 3.2 2 1 1 3 3 3 0 Haemolysin XhlA H-kinase_dim PF02895.9 gi|284163533|ref|YP_003401812.1| - 7.6 6.9 23.1 1.5e+04 -6.1 15.3 3.6 1 1 0 1 1 0 0 Signal transducing histidine kinase, homodimeric domain Tho2 PF11262.3 gi|284163533|ref|YP_003401812.1| - 9.3 5.1 10.7 0.41 9.6 1.2 2.0 2 0 0 2 2 2 0 Transcription factor/nuclear export subunit protein 2 Nup54 PF13874.1 gi|284163533|ref|YP_003401812.1| - 9.5 5.8 20.4 1.8 8.2 4.7 2.3 2 1 0 2 2 2 0 Nucleoporin complex subunit 54 Jnk-SapK_ap_N PF09744.4 gi|284163533|ref|YP_003401812.1| - 9.5 6.1 18.1 2.4 8.1 4.7 2.1 2 0 0 2 2 2 0 JNK_SAPK-associated protein-1 SRP54 PF00448.17 gi|284163534|ref|YP_003401813.1| - 8.1e-70 234.2 0.1 1.2e-69 233.7 0.0 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|284163534|ref|YP_003401813.1| - 2.3e-12 46.8 0.6 2.3e-12 46.8 0.4 2.2 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain APS_kinase PF01583.15 gi|284163534|ref|YP_003401813.1| - 3.2e-05 23.6 0.0 6e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase CbiA PF01656.18 gi|284163534|ref|YP_003401813.1| - 0.00035 20.0 3.9 0.00044 19.7 0.4 2.6 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain Thymidylate_kin PF02223.12 gi|284163534|ref|YP_003401813.1| - 0.00049 19.5 0.3 0.0093 15.3 0.0 2.8 3 0 0 3 3 3 1 Thymidylate kinase KTI12 PF08433.5 gi|284163534|ref|YP_003401813.1| - 0.0023 17.1 0.0 0.0038 16.4 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 Zeta_toxin PF06414.7 gi|284163534|ref|YP_003401813.1| - 0.003 16.7 0.1 0.0078 15.3 0.1 1.7 1 0 0 1 1 1 1 Zeta toxin MobB PF03205.9 gi|284163534|ref|YP_003401813.1| - 0.0047 16.6 0.1 0.011 15.3 0.1 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.1 gi|284163534|ref|YP_003401813.1| - 0.006 16.5 0.1 0.006 16.5 0.1 3.0 3 0 0 3 3 2 1 AAA domain AAA_22 PF13401.1 gi|284163534|ref|YP_003401813.1| - 0.007 16.5 0.0 0.02 15.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|284163534|ref|YP_003401813.1| - 0.0099 15.8 0.0 0.0099 15.8 0.0 2.9 3 1 0 3 3 2 1 AAA ATPase domain cobW PF02492.14 gi|284163534|ref|YP_003401813.1| - 0.018 14.5 0.1 0.039 13.3 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ATP_bind_1 PF03029.12 gi|284163534|ref|YP_003401813.1| - 0.039 13.4 0.0 0.066 12.7 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein NTPase_1 PF03266.10 gi|284163534|ref|YP_003401813.1| - 0.047 13.3 0.1 0.1 12.3 0.1 1.5 1 0 0 1 1 1 0 NTPase 6PF2K PF01591.13 gi|284163534|ref|YP_003401813.1| - 0.05 12.6 0.0 0.087 11.8 0.0 1.3 1 0 0 1 1 1 0 6-phosphofructo-2-kinase MMR_HSR1 PF01926.18 gi|284163534|ref|YP_003401813.1| - 0.15 12.0 0.2 0.47 10.4 0.0 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_17 PF13207.1 gi|284163534|ref|YP_003401813.1| - 6.5 7.5 7.8 0.45 11.3 0.1 3.0 3 2 0 3 3 3 0 AAA domain NIR_SIR PF01077.17 gi|284163536|ref|YP_003401815.1| - 1.7e-49 167.1 0.0 3e-35 120.8 0.0 2.4 2 0 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|284163536|ref|YP_003401815.1| - 2.4e-29 100.7 0.1 7.6e-14 51.0 0.0 3.3 2 1 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain DGC PF08859.6 gi|284163536|ref|YP_003401815.1| - 0.023 14.5 0.0 0.41 10.5 0.0 2.4 2 0 0 2 2 2 0 DGC domain FrhB_FdhB_C PF04432.8 gi|284163537|ref|YP_003401816.1| - 4.2e-30 104.2 0.1 4.2e-30 104.2 0.0 2.0 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|284163537|ref|YP_003401816.1| - 8.6e-21 73.6 0.1 2e-20 72.4 0.1 1.6 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_21 PF14697.1 gi|284163537|ref|YP_003401816.1| - 1.5e-09 37.5 6.4 1.5e-09 37.5 4.4 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|284163537|ref|YP_003401816.1| - 5.6e-09 35.2 18.8 4.5e-07 29.2 2.9 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|284163537|ref|YP_003401816.1| - 1.4e-07 31.6 8.2 1.4e-07 31.6 5.7 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|284163537|ref|YP_003401816.1| - 1.9e-07 31.3 21.9 3.4e-06 27.3 7.3 2.9 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|284163537|ref|YP_003401816.1| - 3.2e-07 29.8 18.2 4.3e-06 26.3 2.9 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|284163537|ref|YP_003401816.1| - 3.2e-07 30.0 14.0 3.7e-07 29.8 7.4 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|284163537|ref|YP_003401816.1| - 6.1e-07 30.0 7.8 0.0088 16.7 0.9 3.9 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|284163537|ref|YP_003401816.1| - 7.8e-06 26.1 4.8 0.0071 16.6 0.1 3.0 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|284163537|ref|YP_003401816.1| - 1.2e-05 24.9 3.4 1.2e-05 24.9 2.4 3.1 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_18 PF13746.1 gi|284163537|ref|YP_003401816.1| - 3.2e-05 24.2 9.6 0.0072 16.7 0.1 3.0 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|284163537|ref|YP_003401816.1| - 5.1e-05 23.2 20.2 0.006 16.8 2.9 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|284163537|ref|YP_003401816.1| - 0.0052 16.7 14.5 0.016 15.2 8.3 2.8 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|284163537|ref|YP_003401816.1| - 0.041 14.4 3.1 0.041 14.4 2.2 4.1 3 1 1 4 4 3 0 4Fe-4S single cluster domain ELH PF02323.10 gi|284163537|ref|YP_003401816.1| - 0.21 10.7 0.2 0.42 9.7 0.0 1.5 2 0 0 2 2 2 0 Egg-laying hormone precursor Fer4_13 PF13370.1 gi|284163537|ref|YP_003401816.1| - 0.32 11.4 20.1 0.14 12.6 3.1 3.9 4 0 0 4 4 4 0 4Fe-4S single cluster domain PAP2 PF01569.16 gi|284163538|ref|YP_003401817.1| - 1.1e-19 70.4 4.5 1.1e-19 70.4 3.1 2.2 3 0 0 3 3 3 1 PAP2 superfamily PAP2_3 PF14378.1 gi|284163538|ref|YP_003401817.1| - 2.6e-05 23.8 7.7 2.6e-05 23.8 5.3 2.2 2 1 0 2 2 2 1 PAP2 superfamily PAP2_C PF14360.1 gi|284163538|ref|YP_003401817.1| - 0.0095 16.1 2.0 0.0095 16.1 1.4 2.4 2 1 1 3 3 3 1 PAP2 superfamily C-terminal FUSC_2 PF13515.1 gi|284163538|ref|YP_003401817.1| - 0.027 14.3 16.2 0.034 14.0 7.2 2.3 2 0 0 2 2 2 0 Fusaric acid resistance protein-like DUF2930 PF11152.3 gi|284163538|ref|YP_003401817.1| - 0.48 9.5 3.1 3.5 6.7 1.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2930) GPI2 PF06432.6 gi|284163538|ref|YP_003401817.1| - 8 5.7 11.8 0.53 9.5 4.8 1.5 2 0 0 2 2 2 0 Phosphatidylinositol N-acetylglucosaminyltransferase DUF2079 PF09852.4 gi|284163538|ref|YP_003401817.1| - 9.9 4.7 11.5 35 2.9 7.9 1.8 1 1 0 1 1 1 0 Predicted membrane protein (DUF2079) Mem_trans PF03547.13 gi|284163539|ref|YP_003401818.1| - 3.7e-30 104.5 20.2 1.6e-17 62.9 7.4 2.1 1 1 1 2 2 2 2 Membrane transport protein DUF1358 PF07096.6 gi|284163539|ref|YP_003401818.1| - 0.037 13.7 0.8 0.076 12.6 0.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1358) Acetyltransf_4 PF13420.1 gi|284163540|ref|YP_003401819.1| - 6.4e-26 91.1 0.0 7.6e-26 90.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|284163540|ref|YP_003401819.1| - 1.2e-10 41.5 0.1 1.7e-10 41.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|284163540|ref|YP_003401819.1| - 2.3e-10 40.3 0.1 3.4e-10 39.8 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.1 gi|284163540|ref|YP_003401819.1| - 1.1e-06 28.6 0.0 1.4e-06 28.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|284163540|ref|YP_003401819.1| - 2.5e-06 27.5 0.0 3.5e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|284163540|ref|YP_003401819.1| - 4.1e-05 23.7 0.0 5.7e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|284163540|ref|YP_003401819.1| - 0.0024 17.6 0.0 0.004 16.8 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein TMP-TENI PF02581.12 gi|284163541|ref|YP_003401820.1| - 1.8e-61 206.3 2.2 2.2e-61 206.1 1.5 1.1 1 0 0 1 1 1 1 Thiamine monophosphate synthase/TENI NMO PF03060.10 gi|284163541|ref|YP_003401820.1| - 0.00058 19.1 8.4 0.0019 17.4 5.8 1.8 1 1 0 1 1 1 1 Nitronate monooxygenase ThiG PF05690.9 gi|284163541|ref|YP_003401820.1| - 0.0009 18.3 4.0 0.0016 17.5 2.8 1.3 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG DHO_dh PF01180.16 gi|284163541|ref|YP_003401820.1| - 0.11 11.3 7.8 0.086 11.7 1.4 2.1 1 1 1 2 2 2 0 Dihydroorotate dehydrogenase DUF561 PF04481.7 gi|284163541|ref|YP_003401820.1| - 0.13 11.1 2.0 0.33 9.8 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF561) HK PF02110.10 gi|284163542|ref|YP_003401821.1| - 1.2e-64 217.8 1.7 1.3e-64 217.6 1.2 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.7 gi|284163542|ref|YP_003401821.1| - 7.2e-08 31.9 0.3 1.1e-07 31.3 0.2 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.12 gi|284163542|ref|YP_003401821.1| - 0.00054 19.3 1.3 0.0008 18.7 0.9 1.3 1 1 0 1 1 1 1 Carbohydrate kinase Prominin PF05478.6 gi|284163543|ref|YP_003401822.1| - 0.011 13.3 0.2 0.015 12.9 0.1 1.2 1 1 0 1 1 1 0 Prominin DUF883 PF05957.8 gi|284163543|ref|YP_003401822.1| - 0.45 10.9 5.4 14 6.2 2.0 2.2 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) Rubrerythrin PF02915.12 gi|284163544|ref|YP_003401823.1| - 0.00017 21.9 5.2 0.0003 21.1 0.6 2.4 2 1 0 2 2 2 1 Rubrerythrin HisKA PF00512.20 gi|284163544|ref|YP_003401823.1| - 0.0052 16.7 1.3 1.3 9.0 0.1 2.8 1 1 1 2 2 2 2 His Kinase A (phospho-acceptor) domain ImcF-related_N PF14331.1 gi|284163544|ref|YP_003401823.1| - 0.035 12.9 1.6 0.63 8.8 0.2 2.1 1 1 1 2 2 2 0 ImcF-related N-terminal domain Gam PF06064.6 gi|284163544|ref|YP_003401823.1| - 0.058 13.5 0.3 0.16 12.0 0.2 1.7 1 0 0 1 1 1 0 Host-nuclease inhibitor protein Gam Stimulus_sens_1 PF13756.1 gi|284163544|ref|YP_003401823.1| - 0.093 13.1 0.5 3.2 8.1 0.1 2.2 2 0 0 2 2 2 0 Stimulus-sensing domain Polysacc_deac_1 PF01522.16 gi|284163545|ref|YP_003401824.1| - 2.4e-10 40.1 0.0 4e-10 39.3 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF2391 PF09622.5 gi|284163546|ref|YP_003401825.1| - 0.00022 20.4 0.6 0.00027 20.1 0.4 1.1 1 0 0 1 1 1 1 Putative integral membrane protein (DUF2391) DUF973 PF06157.6 gi|284163546|ref|YP_003401825.1| - 0.022 13.7 0.5 0.028 13.3 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF973) Corona_S1 PF01600.11 gi|284163546|ref|YP_003401825.1| - 0.024 12.9 0.0 0.035 12.3 0.0 1.2 1 0 0 1 1 1 0 Coronavirus S1 glycoprotein DUF296 PF03479.10 gi|284163546|ref|YP_003401825.1| - 0.027 14.0 0.8 0.24 11.0 0.1 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF296) DPM3 PF08285.6 gi|284163546|ref|YP_003401825.1| - 0.049 13.4 0.1 0.08 12.7 0.0 1.4 1 0 0 1 1 1 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) Rhodanese PF00581.15 gi|284163547|ref|YP_003401826.1| - 9.9e-40 135.4 0.4 3.6e-21 75.6 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain Rhodanese PF00581.15 gi|284163548|ref|YP_003401827.1| - 2.9e-43 146.8 0.0 7.4e-22 77.8 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain Asn_synthase PF00733.16 gi|284163549|ref|YP_003401828.1| - 1.3e-66 224.7 0.2 1.9e-66 224.1 0.2 1.2 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.1 gi|284163549|ref|YP_003401828.1| - 8.4e-45 151.5 0.0 1.4e-44 150.7 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|284163549|ref|YP_003401828.1| - 1.7e-40 138.0 0.0 3.1e-40 137.2 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain DUF3700 PF12481.3 gi|284163549|ref|YP_003401828.1| - 2.6e-07 30.0 0.0 4.5e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 Aluminium induced protein GATase_2 PF00310.16 gi|284163549|ref|YP_003401828.1| - 4.4e-06 25.6 0.0 0.0092 14.7 0.0 2.4 1 1 1 2 2 2 2 Glutamine amidotransferases class-II NAD_synthase PF02540.12 gi|284163549|ref|YP_003401828.1| - 0.0017 17.3 0.0 0.0024 16.7 0.0 1.3 1 0 0 1 1 1 1 NAD synthase DUF1933 PF09147.5 gi|284163549|ref|YP_003401828.1| - 0.0095 15.3 0.0 0.016 14.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1933) QueC PF06508.8 gi|284163549|ref|YP_003401828.1| - 0.014 14.6 0.0 0.026 13.7 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC HATPase_c PF02518.21 gi|284163550|ref|YP_003401829.1| - 4.5e-29 100.3 0.0 1.1e-28 99.2 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|284163550|ref|YP_003401829.1| - 1.3e-12 47.5 0.3 2.7e-11 43.3 0.0 2.8 2 1 0 2 2 2 1 His Kinase A (phospho-acceptor) domain GAF PF01590.21 gi|284163550|ref|YP_003401829.1| - 6.3e-11 42.6 1.5 1.4e-10 41.4 0.1 2.3 3 0 0 3 3 3 1 GAF domain PAS_4 PF08448.5 gi|284163550|ref|YP_003401829.1| - 9.7e-10 38.4 0.3 3.3e-09 36.7 0.2 2.0 1 0 0 1 1 1 1 PAS fold GAF_2 PF13185.1 gi|284163550|ref|YP_003401829.1| - 1.6e-08 35.1 0.4 2.2e-07 31.4 0.1 2.5 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.1 gi|284163550|ref|YP_003401829.1| - 7.2e-07 29.3 0.1 1.9e-06 28.0 0.1 1.7 1 0 0 1 1 1 1 GAF domain PAS_9 PF13426.1 gi|284163550|ref|YP_003401829.1| - 1.4e-06 28.6 0.0 4.6e-06 26.9 0.0 1.9 1 0 0 1 1 1 1 PAS domain PAS_8 PF13188.1 gi|284163550|ref|YP_003401829.1| - 5.7e-06 25.9 0.0 2.7e-05 23.8 0.0 2.3 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|284163550|ref|YP_003401829.1| - 0.00044 19.9 0.0 0.0012 18.6 0.0 1.7 1 0 0 1 1 1 1 PAS fold HATPase_c_5 PF14501.1 gi|284163550|ref|YP_003401829.1| - 0.0016 18.0 0.0 0.0031 17.1 0.0 1.4 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.1 gi|284163550|ref|YP_003401829.1| - 0.0086 15.8 0.0 0.019 14.7 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|284163550|ref|YP_003401829.1| - 0.18 11.4 0.0 0.39 10.3 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Pyr_redox_dim PF02852.17 gi|284163551|ref|YP_003401830.1| - 1.1e-28 99.5 0.1 1.9e-28 98.6 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_2 PF07992.9 gi|284163551|ref|YP_003401830.1| - 4.4e-26 92.0 14.1 4.2e-25 88.8 9.8 3.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|284163551|ref|YP_003401830.1| - 2.7e-17 62.9 3.4 2.4e-15 56.6 0.1 2.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.1 gi|284163551|ref|YP_003401830.1| - 3.2e-06 26.2 0.0 1.2e-05 24.3 0.0 1.8 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) GIDA PF01134.17 gi|284163551|ref|YP_003401830.1| - 6.9e-05 21.8 1.1 0.0086 14.9 0.3 2.3 2 0 0 2 2 2 2 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|284163551|ref|YP_003401830.1| - 0.00016 21.8 0.0 0.0088 16.1 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|284163551|ref|YP_003401830.1| - 0.00046 19.1 1.3 0.0011 17.9 0.8 1.8 1 1 0 1 1 1 1 FAD binding domain 3HCDH_N PF02737.13 gi|284163551|ref|YP_003401830.1| - 0.00056 19.6 0.6 0.012 15.2 0.0 2.5 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DAO PF01266.19 gi|284163551|ref|YP_003401830.1| - 0.00069 18.6 10.7 0.1 11.5 0.5 3.2 3 0 0 3 3 3 2 FAD dependent oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|284163551|ref|YP_003401830.1| - 0.012 14.9 0.1 0.022 14.1 0.1 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAD_oxidored PF12831.2 gi|284163551|ref|YP_003401830.1| - 0.022 13.8 1.9 0.039 13.0 1.3 1.4 1 0 0 1 1 1 0 FAD dependent oxidoreductase XdhC_C PF13478.1 gi|284163551|ref|YP_003401830.1| - 0.04 14.2 0.0 0.11 12.7 0.0 1.8 2 0 0 2 2 2 0 XdhC Rossmann domain ApbA PF02558.11 gi|284163551|ref|YP_003401830.1| - 0.11 11.8 0.1 0.3 10.5 0.0 1.7 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA NAD_binding_10 PF13460.1 gi|284163551|ref|YP_003401830.1| - 0.31 11.0 3.4 12 5.8 0.2 3.1 3 0 0 3 3 3 0 NADH(P)-binding NAD_binding_8 PF13450.1 gi|284163551|ref|YP_003401830.1| - 2.4 8.2 5.8 8.8 6.4 0.3 2.9 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain MDMPI_C PF07398.6 gi|284163551|ref|YP_003401830.1| - 4.9 7.7 18.9 0.22 12.1 0.7 4.0 4 1 1 5 5 5 0 MDMPI C-terminal domain Virul_fac_BrkB PF03631.10 gi|284163552|ref|YP_003401831.1| - 1.1e-40 139.7 18.6 1.2e-40 139.4 12.9 1.1 1 0 0 1 1 1 1 Virulence factor BrkB FG-GAP PF01839.18 gi|284163553|ref|YP_003401832.1| - 0.039 13.6 7.1 0.13 11.9 4.9 2.0 1 1 0 1 1 1 0 FG-GAP repeat VCBS PF13517.1 gi|284163553|ref|YP_003401832.1| - 2.3 8.6 6.3 0.52 10.7 1.3 1.9 2 1 1 3 3 3 0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella UPF0150 PF03681.10 gi|284163554|ref|YP_003401833.1| - 1.4e-05 24.6 0.6 1.7e-05 24.3 0.0 1.5 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0150) GlnD_UR_UTase PF08335.6 gi|284163554|ref|YP_003401833.1| - 0.053 13.3 0.1 0.14 12.0 0.1 1.6 1 1 0 1 1 1 0 GlnD PII-uridylyltransferase DUF3832 PF12909.2 gi|284163554|ref|YP_003401833.1| - 0.066 13.2 0.1 0.073 13.1 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3832) SRP54 PF00448.17 gi|284163555|ref|YP_003401834.1| - 4.8e-64 215.4 0.2 8.7e-64 214.5 0.1 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|284163555|ref|YP_003401834.1| - 4.4e-30 104.0 4.5 4.4e-30 104.0 3.1 3.1 2 1 1 3 3 3 1 Signal peptide binding domain SRP54_N PF02881.14 gi|284163555|ref|YP_003401834.1| - 2.2e-15 56.5 0.4 2.2e-15 56.5 0.3 2.8 3 0 0 3 3 3 1 SRP54-type protein, helical bundle domain cobW PF02492.14 gi|284163555|ref|YP_003401834.1| - 0.00067 19.1 0.7 0.0047 16.3 0.5 2.2 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.7 gi|284163555|ref|YP_003401834.1| - 0.00096 18.2 0.0 0.0036 16.4 0.0 1.9 2 0 0 2 2 2 1 Zeta toxin CbiA PF01656.18 gi|284163555|ref|YP_003401834.1| - 0.0011 18.4 0.3 0.0048 16.3 0.0 2.3 2 2 1 3 3 3 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_25 PF13481.1 gi|284163555|ref|YP_003401834.1| - 0.0028 17.0 1.2 0.0065 15.8 0.2 2.1 2 1 0 2 2 2 1 AAA domain CARD PF00619.16 gi|284163555|ref|YP_003401834.1| - 0.0055 16.5 0.5 0.12 12.1 0.1 2.5 2 0 0 2 2 2 1 Caspase recruitment domain AAA_22 PF13401.1 gi|284163555|ref|YP_003401834.1| - 0.0062 16.6 0.3 0.041 14.0 0.0 2.4 3 0 0 3 3 3 1 AAA domain MobB PF03205.9 gi|284163555|ref|YP_003401834.1| - 0.0083 15.8 0.0 0.023 14.3 0.0 1.8 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B SMC_N PF02463.14 gi|284163555|ref|YP_003401834.1| - 0.0084 15.3 0.0 0.015 14.5 0.0 1.4 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|284163555|ref|YP_003401834.1| - 0.014 14.8 3.3 0.02 14.3 2.3 1.4 1 1 0 1 1 1 0 AAA-like domain AAA_33 PF13671.1 gi|284163555|ref|YP_003401834.1| - 0.021 14.7 0.0 0.046 13.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain DUF4618 PF15397.1 gi|284163555|ref|YP_003401834.1| - 0.022 14.1 2.4 0.056 12.7 0.3 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) APS_kinase PF01583.15 gi|284163555|ref|YP_003401834.1| - 0.027 14.1 0.0 0.065 12.8 0.0 1.7 1 0 0 1 1 1 0 Adenylylsulphate kinase DUF2202 PF09968.4 gi|284163555|ref|YP_003401834.1| - 0.048 13.3 0.3 0.15 11.7 0.0 1.9 2 0 0 2 2 2 0 Uncharacterized protein domain (DUF2202) KTI12 PF08433.5 gi|284163555|ref|YP_003401834.1| - 0.074 12.2 0.0 0.17 11.0 0.0 1.6 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_23 PF13476.1 gi|284163555|ref|YP_003401834.1| - 0.08 13.2 1.4 0.11 12.8 0.1 2.1 2 1 0 2 2 1 0 AAA domain ArsA_ATPase PF02374.10 gi|284163555|ref|YP_003401834.1| - 0.093 11.7 0.0 0.093 11.7 0.0 2.6 2 1 0 3 3 3 0 Anion-transporting ATPase Thymidylate_kin PF02223.12 gi|284163555|ref|YP_003401834.1| - 0.41 9.9 0.0 0.41 9.9 0.0 2.3 3 0 0 3 3 3 0 Thymidylate kinase Hpt PF01627.18 gi|284163555|ref|YP_003401834.1| - 8.4 6.4 7.1 0.98 9.4 0.2 2.9 4 0 0 4 4 3 0 Hpt domain Vps16_C PF04840.7 gi|284163556|ref|YP_003401835.1| - 0.16 10.9 0.1 0.23 10.3 0.0 1.2 1 0 0 1 1 1 0 Vps16, C-terminal region CBS PF00571.23 gi|284163557|ref|YP_003401836.1| - 3.4e-25 87.5 2.1 5.2e-15 54.9 0.2 2.5 2 0 0 2 2 2 2 CBS domain MaoC_dehydratas PF01575.14 gi|284163557|ref|YP_003401836.1| - 3e-21 75.0 0.0 5.1e-21 74.3 0.0 1.3 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|284163557|ref|YP_003401836.1| - 8.2e-05 22.4 0.1 0.00026 20.7 0.1 1.9 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT_2 PF13279.1 gi|284163557|ref|YP_003401836.1| - 0.0046 17.3 0.0 0.011 16.1 0.0 1.5 1 1 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.17 gi|284163557|ref|YP_003401836.1| - 0.016 15.3 0.0 0.037 14.1 0.0 1.7 1 0 0 1 1 1 0 Thioesterase superfamily Lysyl_oxidase PF01186.12 gi|284163559|ref|YP_003401838.1| - 8.4e-20 71.2 0.2 1.2e-19 70.7 0.1 1.1 1 0 0 1 1 1 1 Lysyl oxidase DUF1510 PF07423.6 gi|284163559|ref|YP_003401838.1| - 0.00037 19.9 0.1 0.00072 18.9 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1510) CRA PF06589.6 gi|284163559|ref|YP_003401838.1| - 0.012 14.9 0.5 0.018 14.3 0.3 1.3 1 0 0 1 1 1 0 Circumsporozoite-related antigen (CRA) Trypan_PARP PF05887.6 gi|284163559|ref|YP_003401838.1| - 0.051 13.3 2.2 0.078 12.7 1.5 1.2 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) DUF2534 PF10749.4 gi|284163559|ref|YP_003401838.1| - 0.15 12.0 0.1 0.24 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2534) RNA_binding PF01877.12 gi|284163560|ref|YP_003401839.1| - 6.7e-23 80.9 0.8 1.7e-22 79.6 0.6 1.6 1 1 0 1 1 1 1 RNA binding AAA_18 PF13238.1 gi|284163561|ref|YP_003401840.1| - 2.1e-13 50.7 0.0 3.2e-13 50.1 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|284163561|ref|YP_003401840.1| - 2.2e-10 41.3 0.1 4.1e-10 40.5 0.1 1.5 1 1 0 1 1 1 1 AAA domain ADK PF00406.17 gi|284163561|ref|YP_003401840.1| - 9.3e-07 28.8 0.0 1.3e-06 28.3 0.0 1.1 1 0 0 1 1 1 1 Adenylate kinase AAA_33 PF13671.1 gi|284163561|ref|YP_003401840.1| - 9.3e-07 28.8 0.0 1.4e-06 28.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain PEP-utilizers PF00391.18 gi|284163561|ref|YP_003401840.1| - 0.078 12.5 2.1 0.28 10.7 1.2 2.1 2 1 0 2 2 2 0 PEP-utilising enzyme, mobile domain DUF307 PF03733.8 gi|284163563|ref|YP_003401842.1| - 1.3e-06 28.6 24.2 0.00021 21.6 5.4 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF307) Phage_Coat_Gp8 PF05371.7 gi|284163563|ref|YP_003401842.1| - 0.014 14.9 1.3 0.014 14.9 0.9 2.0 2 0 0 2 2 2 0 Phage major coat protein, Gp8 Leader_Trp PF08255.6 gi|284163563|ref|YP_003401842.1| - 0.28 10.9 6.2 0.81 9.4 0.7 2.9 2 0 0 2 2 2 0 Trp-operon Leader Peptide AAT PF03417.11 gi|284163564|ref|YP_003401843.1| - 6.2e-13 48.7 0.0 1.1e-12 47.9 0.0 1.4 1 0 0 1 1 1 1 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase CBAH PF02275.13 gi|284163564|ref|YP_003401843.1| - 0.0023 17.4 0.0 0.0032 16.9 0.0 1.1 1 0 0 1 1 1 1 Linear amide C-N hydrolases, choloylglycine hydrolase family MEDS PF14417.1 gi|284163565|ref|YP_003401844.1| - 1.6e-35 121.9 0.5 4.7e-35 120.4 0.4 1.7 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain HATPase_c PF02518.21 gi|284163565|ref|YP_003401844.1| - 1.1e-32 112.0 0.0 2e-29 101.5 0.0 2.4 2 0 0 2 2 2 2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|284163565|ref|YP_003401844.1| - 3e-16 59.3 0.8 1e-15 57.5 0.3 2.1 2 0 0 2 2 2 1 PAS fold HisKA PF00512.20 gi|284163565|ref|YP_003401844.1| - 2.9e-09 36.7 0.1 2.9e-09 36.7 0.1 3.9 3 1 1 4 4 4 1 His Kinase A (phospho-acceptor) domain KaiC PF06745.8 gi|284163565|ref|YP_003401844.1| - 3e-08 33.0 0.1 6.4e-08 31.9 0.1 1.5 1 0 0 1 1 1 1 KaiC PAS_9 PF13426.1 gi|284163565|ref|YP_003401844.1| - 2.1e-07 31.2 0.4 1.2e-06 28.8 0.1 2.5 2 0 0 2 2 2 1 PAS domain HATPase_c_5 PF14501.1 gi|284163565|ref|YP_003401844.1| - 5.6e-07 29.2 0.0 4.4e-06 26.3 0.0 2.2 2 0 0 2 2 2 1 GHKL domain PAS_4 PF08448.5 gi|284163565|ref|YP_003401844.1| - 6.6e-06 26.1 0.6 2.5e-05 24.2 0.4 2.0 1 0 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.1 gi|284163565|ref|YP_003401844.1| - 6.2e-05 22.7 0.1 0.00017 21.3 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS PF00989.19 gi|284163565|ref|YP_003401844.1| - 0.00014 21.6 0.3 0.00056 19.6 0.1 2.3 1 1 0 1 1 1 1 PAS fold Noelin-1 PF12308.3 gi|284163565|ref|YP_003401844.1| - 0.005 16.6 0.7 0.03 14.0 0.0 2.3 2 0 0 2 2 2 1 Neurogenesis glycoprotein HATPase_c_3 PF13589.1 gi|284163565|ref|YP_003401844.1| - 0.069 12.8 0.0 0.21 11.2 0.0 1.8 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF4279 PF14106.1 gi|284163565|ref|YP_003401844.1| - 0.18 11.6 1.9 7.1 6.5 0.0 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4279) FYVE_2 PF02318.11 gi|284163565|ref|YP_003401844.1| - 4.7 7.1 5.5 6.9 6.5 0.2 2.5 2 0 0 2 2 2 0 FYVE-type zinc finger CCDC-167 PF15188.1 gi|284163565|ref|YP_003401844.1| - 5.6 6.9 10.0 8.5 6.3 2.0 2.8 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 167 GCS2 PF04107.8 gi|284163566|ref|YP_003401845.1| - 1.6e-06 27.4 1.0 1.2e-05 24.5 0.7 2.0 1 1 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) Pyr_redox_2 PF07992.9 gi|284163567|ref|YP_003401846.1| - 9.5e-18 64.8 0.2 1.6e-12 47.6 0.0 2.9 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|284163567|ref|YP_003401846.1| - 6.1e-11 41.8 0.4 3.3e-05 22.9 0.0 2.4 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|284163567|ref|YP_003401846.1| - 1.4e-07 30.7 0.6 3.5e-06 26.1 0.0 2.2 2 1 0 2 2 2 1 FAD binding domain FAD_binding_3 PF01494.14 gi|284163567|ref|YP_003401846.1| - 3.1e-07 29.8 0.2 7.1e-05 22.0 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain HI0933_like PF03486.9 gi|284163567|ref|YP_003401846.1| - 6.7e-07 28.1 0.1 8.6e-06 24.4 0.0 2.1 2 0 0 2 2 2 1 HI0933-like protein GIDA PF01134.17 gi|284163567|ref|YP_003401846.1| - 1.4e-06 27.4 0.3 8.9e-06 24.7 0.1 2.0 2 0 0 2 2 2 1 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|284163567|ref|YP_003401846.1| - 2.6e-05 24.1 0.0 7.7e-05 22.6 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|284163567|ref|YP_003401846.1| - 0.00039 19.6 0.2 0.00073 18.6 0.0 1.7 2 0 0 2 2 2 1 Thi4 family Pyr_redox_3 PF13738.1 gi|284163567|ref|YP_003401846.1| - 0.00076 19.5 1.3 0.026 14.6 0.9 2.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|284163567|ref|YP_003401846.1| - 0.0013 17.8 0.8 0.0018 17.4 0.0 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.1 gi|284163567|ref|YP_003401846.1| - 0.0016 18.2 0.7 2.2 8.0 0.0 2.9 3 0 0 3 3 3 2 FAD-NAD(P)-binding Pyr_redox PF00070.22 gi|284163567|ref|YP_003401846.1| - 0.0022 18.3 0.3 0.0093 16.3 0.0 2.1 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|284163567|ref|YP_003401846.1| - 0.016 14.8 0.0 0.029 14.0 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|284163567|ref|YP_003401846.1| - 0.023 14.2 0.0 0.054 13.0 0.0 1.6 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.7 gi|284163567|ref|YP_003401846.1| - 0.026 13.4 0.0 0.054 12.4 0.0 1.5 2 0 0 2 2 2 0 Lycopene cyclase protein Glyoxalase PF00903.20 gi|284163568|ref|YP_003401847.1| - 1.8e-10 40.8 0.1 3.1e-10 40.1 0.1 1.4 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|284163568|ref|YP_003401847.1| - 2.6e-07 30.6 0.0 4.7e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|284163568|ref|YP_003401847.1| - 2.7e-07 31.1 0.1 5.7e-07 30.1 0.0 1.5 2 0 0 2 2 2 1 Glyoxalase-like domain Abhydrolase_2 PF02230.11 gi|284163569|ref|YP_003401848.1| - 3.5e-21 75.6 0.0 1.8e-20 73.3 0.0 1.8 1 1 0 1 1 1 1 Phospholipase/Carboxylesterase Abhydrolase_5 PF12695.2 gi|284163569|ref|YP_003401848.1| - 1e-13 51.2 0.0 1.2e-13 51.0 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|284163569|ref|YP_003401848.1| - 1.7e-10 41.1 0.6 4.4e-07 29.9 0.1 2.1 1 1 1 2 2 2 2 Alpha/beta hydrolase family DLH PF01738.13 gi|284163569|ref|YP_003401848.1| - 1.6e-07 30.8 0.0 2.2e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_3 PF07859.8 gi|284163569|ref|YP_003401848.1| - 0.0019 17.7 0.3 0.69 9.4 0.0 2.2 1 1 1 2 2 2 2 alpha/beta hydrolase fold Peptidase_S9 PF00326.16 gi|284163569|ref|YP_003401848.1| - 0.0039 16.4 0.5 1.1 8.3 0.0 2.4 3 0 0 3 3 3 2 Prolyl oligopeptidase family Esterase_phd PF10503.4 gi|284163569|ref|YP_003401848.1| - 0.0058 15.8 0.0 0.0085 15.3 0.0 1.2 1 0 0 1 1 1 1 Esterase PHB depolymerase FSH1 PF03959.8 gi|284163569|ref|YP_003401848.1| - 0.011 15.1 0.0 0.017 14.5 0.0 1.2 1 0 0 1 1 1 0 Serine hydrolase (FSH1) Abhydrolase_1 PF00561.15 gi|284163569|ref|YP_003401848.1| - 0.017 14.6 0.0 0.037 13.5 0.0 1.5 1 1 1 2 2 2 0 alpha/beta hydrolase fold PE-PPE PF08237.6 gi|284163569|ref|YP_003401848.1| - 0.065 12.6 0.0 0.16 11.3 0.0 1.6 2 0 0 2 2 2 0 PE-PPE domain Cutinase PF01083.17 gi|284163569|ref|YP_003401848.1| - 0.11 12.2 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 Cutinase UCR_Fe-S_N PF10399.4 gi|284163570|ref|YP_003401849.1| - 0.012 14.7 2.3 0.02 14.0 1.6 1.4 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Usp PF00582.21 gi|284163571|ref|YP_003401850.1| - 6.4e-31 107.4 2.8 7.5e-31 107.1 1.9 1.1 1 0 0 1 1 1 1 Universal stress protein family PHO4 PF01384.15 gi|284163572|ref|YP_003401851.1| - 3.2e-50 170.6 19.2 3.2e-50 170.6 13.3 1.8 1 1 0 2 2 2 1 Phosphate transporter family Peptidase_M29 PF02073.10 gi|284163573|ref|YP_003401852.1| - 2.9e-113 378.6 1.9 3.3e-113 378.4 1.3 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) DUF2721 PF11026.3 gi|284163574|ref|YP_003401853.1| - 0.033 13.8 0.1 0.035 13.7 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) Apq12 PF12716.2 gi|284163574|ref|YP_003401853.1| - 0.31 10.7 1.7 0.77 9.4 0.2 1.9 2 0 0 2 2 2 0 Nuclear pore assembly and biogenesis DUF4083 PF13314.1 gi|284163575|ref|YP_003401854.1| - 0.029 14.1 2.7 0.035 13.9 1.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4083) 7tm_4 PF13853.1 gi|284163575|ref|YP_003401854.1| - 0.16 11.7 1.4 0.18 11.5 1.0 1.0 1 0 0 1 1 1 0 Olfactory receptor HAMP PF00672.20 gi|284163575|ref|YP_003401854.1| - 0.44 10.7 2.2 0.48 10.6 1.5 1.1 1 0 0 1 1 1 0 HAMP domain CbiA PF01656.18 gi|284163576|ref|YP_003401855.1| - 1.3e-19 70.3 0.0 2.3e-19 69.5 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|284163576|ref|YP_003401855.1| - 2.1e-08 34.0 2.3 1e-05 25.2 0.1 2.3 2 0 0 2 2 2 2 AAA domain AAA_31 PF13614.1 gi|284163576|ref|YP_003401855.1| - 3.1e-06 27.2 0.0 8.4e-06 25.8 0.0 1.8 1 1 0 1 1 1 1 AAA domain ParA PF10609.4 gi|284163576|ref|YP_003401855.1| - 4.5e-06 26.4 0.7 1.9e-05 24.4 0.2 2.2 1 1 0 1 1 1 1 ParA/MinD ATPase like AAA_25 PF13481.1 gi|284163576|ref|YP_003401855.1| - 4.3e-05 22.9 2.3 0.34 10.2 0.0 3.4 3 1 0 3 3 3 2 AAA domain MipZ PF09140.6 gi|284163576|ref|YP_003401855.1| - 5.2e-05 22.4 0.1 0.00015 20.9 0.0 1.8 2 0 0 2 2 2 1 ATPase MipZ PAXNEB PF05625.6 gi|284163576|ref|YP_003401855.1| - 0.00068 18.5 0.0 0.0027 16.6 0.0 1.7 2 0 0 2 2 2 1 PAXNEB protein KaiC PF06745.8 gi|284163576|ref|YP_003401855.1| - 0.005 15.9 0.2 0.21 10.6 0.0 2.6 2 1 0 2 2 2 1 KaiC DUF853 PF05872.7 gi|284163576|ref|YP_003401855.1| - 0.012 13.9 0.1 0.022 13.1 0.1 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF853) Fer4_NifH PF00142.13 gi|284163576|ref|YP_003401855.1| - 0.025 13.7 0.1 5.9 5.9 0.0 2.6 3 0 0 3 3 3 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family PRK PF00485.13 gi|284163576|ref|YP_003401855.1| - 0.042 13.4 0.0 0.069 12.6 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family FTHFS PF01268.14 gi|284163576|ref|YP_003401855.1| - 0.05 11.5 0.4 0.075 11.0 0.3 1.2 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase YhjQ PF06564.7 gi|284163576|ref|YP_003401855.1| - 0.073 12.4 0.9 0.68 9.2 0.7 2.1 1 1 0 1 1 1 0 YhjQ protein VirC1 PF07015.6 gi|284163576|ref|YP_003401855.1| - 0.08 11.9 0.4 0.58 9.2 0.0 2.2 2 0 0 2 2 2 0 VirC1 protein AP_endonuc_2 PF01261.19 gi|284163576|ref|YP_003401855.1| - 0.089 12.0 0.0 2.6 7.2 0.0 2.3 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel CbiA PF01656.18 gi|284163577|ref|YP_003401856.1| - 3.3e-22 78.8 0.0 1.1e-21 77.1 0.0 1.7 1 1 1 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.4 gi|284163577|ref|YP_003401856.1| - 6e-08 32.4 0.5 3.3e-06 26.9 0.0 2.3 2 0 0 2 2 2 1 ParA/MinD ATPase like AAA_31 PF13614.1 gi|284163577|ref|YP_003401856.1| - 2.1e-06 27.7 0.0 3.8e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain Fer4_NifH PF00142.13 gi|284163577|ref|YP_003401856.1| - 0.00038 19.7 0.2 0.087 11.9 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_17 PF13207.1 gi|284163577|ref|YP_003401856.1| - 0.0014 19.3 0.6 0.0054 17.5 0.4 2.1 1 1 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|284163577|ref|YP_003401856.1| - 0.0036 16.4 1.3 0.048 12.7 0.9 2.2 1 1 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.10 gi|284163577|ref|YP_003401856.1| - 0.0089 15.1 1.5 0.019 14.0 0.6 1.8 2 0 0 2 2 2 1 Anion-transporting ATPase YhjQ PF06564.7 gi|284163577|ref|YP_003401856.1| - 0.038 13.3 0.0 1.5 8.1 0.0 2.1 2 0 0 2 2 2 0 YhjQ protein DSPc PF00782.15 gi|284163577|ref|YP_003401856.1| - 0.076 12.6 0.0 0.77 9.3 0.0 2.0 2 0 0 2 2 2 0 Dual specificity phosphatase, catalytic domain AAA_33 PF13671.1 gi|284163577|ref|YP_003401856.1| - 0.11 12.3 0.8 0.43 10.4 0.5 2.2 1 1 0 1 1 1 0 AAA domain Gp_dh_N PF00044.19 gi|284163579|ref|YP_003401858.1| - 9.3e-18 64.6 0.0 2.6e-17 63.1 0.0 1.7 1 1 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Gp_dh_C PF02800.15 gi|284163579|ref|YP_003401858.1| - 2.5e-16 59.5 0.0 4.2e-16 58.7 0.0 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.15 gi|284163579|ref|YP_003401858.1| - 9e-10 38.5 0.1 2.4e-09 37.1 0.0 1.7 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_3 PF03447.11 gi|284163579|ref|YP_003401858.1| - 8e-05 23.0 0.2 0.00019 21.7 0.1 1.6 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|284163579|ref|YP_003401858.1| - 0.0033 17.7 0.0 0.0065 16.7 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|284163579|ref|YP_003401858.1| - 0.0063 17.0 0.1 0.015 15.7 0.0 1.7 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold 2-Hacid_dh_C PF02826.14 gi|284163579|ref|YP_003401858.1| - 0.013 14.6 0.1 0.068 12.3 0.1 2.0 1 1 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Glyco_trans_1_4 PF13692.1 gi|284163579|ref|YP_003401858.1| - 0.035 14.2 0.0 2.1 8.5 0.0 2.3 2 0 0 2 2 2 0 Glycosyl transferases group 1 HSP20 PF00011.16 gi|284163580|ref|YP_003401859.1| - 3.7e-10 39.5 0.2 5.3e-09 35.8 0.1 2.0 1 1 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.6 gi|284163580|ref|YP_003401859.1| - 1.6e-08 34.3 0.5 2e-08 34.0 0.3 1.2 1 0 0 1 1 1 1 GvpH CS PF04969.11 gi|284163580|ref|YP_003401859.1| - 0.0067 16.9 0.1 0.017 15.6 0.0 1.6 2 0 0 2 2 2 1 CS domain PIH1 PF08190.7 gi|284163580|ref|YP_003401859.1| - 0.028 13.8 0.0 0.037 13.4 0.0 1.1 1 0 0 1 1 1 0 pre-RNA processing PIH1/Nop17 RimK PF08443.6 gi|284163581|ref|YP_003401860.1| - 2.7e-25 88.9 0.0 3.5e-25 88.5 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|284163581|ref|YP_003401860.1| - 2e-15 56.9 0.1 2.9e-15 56.4 0.1 1.1 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.11 gi|284163581|ref|YP_003401860.1| - 5e-12 45.3 0.0 7.5e-12 44.7 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.9 gi|284163581|ref|YP_003401860.1| - 3.9e-07 30.0 0.0 6.4e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|284163581|ref|YP_003401860.1| - 3.8e-06 25.8 0.0 5.8e-06 25.2 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|284163581|ref|YP_003401860.1| - 6.8e-05 22.3 0.0 0.00017 21.0 0.0 1.6 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.17 gi|284163581|ref|YP_003401860.1| - 0.0021 17.4 0.0 0.0036 16.6 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain TTL PF03133.10 gi|284163581|ref|YP_003401860.1| - 0.0031 16.4 0.0 0.037 12.9 0.0 2.0 2 0 0 2 2 2 1 Tubulin-tyrosine ligase family ATPgrasp_TupA PF14305.1 gi|284163581|ref|YP_003401860.1| - 0.0058 15.9 0.0 0.17 11.1 0.0 2.1 2 0 0 2 2 2 1 TupA-like ATPgrasp ATPgrasp_ST PF14397.1 gi|284163581|ref|YP_003401860.1| - 0.012 14.7 0.0 0.057 12.4 0.0 1.8 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp CPSase_L_D2 PF02786.12 gi|284163581|ref|YP_003401860.1| - 0.064 12.5 0.0 0.09 12.0 0.0 1.3 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain Ribosomal_L16 PF00252.13 gi|284163582|ref|YP_003401861.1| - 3.1e-31 107.8 0.0 3.7e-31 107.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e B-block_TFIIIC PF04182.7 gi|284163583|ref|YP_003401862.1| - 0.024 14.5 0.0 0.035 13.9 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC TrmB PF01978.14 gi|284163583|ref|YP_003401862.1| - 0.072 12.7 0.0 0.087 12.5 0.0 1.1 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Imm34 PF15596.1 gi|284163583|ref|YP_003401862.1| - 0.094 12.8 0.1 0.094 12.8 0.0 1.1 1 0 0 1 1 1 0 Immunity protein 34 CBS PF00571.23 gi|284163584|ref|YP_003401863.1| - 1e-28 98.8 3.7 4.3e-14 52.0 0.3 2.3 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.17 gi|284163584|ref|YP_003401863.1| - 9.8e-20 70.3 11.4 2e-14 53.0 2.4 2.5 2 1 1 3 3 3 2 Peptidase family M50 Peptidase_M50B PF13398.1 gi|284163584|ref|YP_003401863.1| - 0.00071 19.0 1.9 0.00071 19.0 1.3 2.0 2 0 0 2 2 2 1 Peptidase M50B-like ABC_tran PF00005.22 gi|284163585|ref|YP_003401864.1| - 7.7e-31 107.2 0.0 1.3e-30 106.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284163585|ref|YP_003401864.1| - 1.4e-15 58.0 0.4 6.2e-10 39.5 0.0 2.2 1 1 1 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|284163585|ref|YP_003401864.1| - 7.5e-05 23.1 0.0 0.00018 21.9 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_10 PF12846.2 gi|284163585|ref|YP_003401864.1| - 0.00024 20.6 0.0 0.00051 19.5 0.0 1.5 1 0 0 1 1 1 1 AAA-like domain IstB_IS21 PF01695.12 gi|284163585|ref|YP_003401864.1| - 0.0013 18.2 0.3 0.29 10.5 0.0 2.3 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_23 PF13476.1 gi|284163585|ref|YP_003401864.1| - 0.0074 16.6 0.1 0.019 15.2 0.0 1.6 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|284163585|ref|YP_003401864.1| - 0.0083 15.3 0.0 1.2 8.2 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_30 PF13604.1 gi|284163585|ref|YP_003401864.1| - 0.0084 15.6 0.3 0.052 13.1 0.0 2.3 2 1 1 3 3 3 1 AAA domain DUF258 PF03193.11 gi|284163585|ref|YP_003401864.1| - 0.014 14.6 0.0 0.03 13.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|284163585|ref|YP_003401864.1| - 0.02 14.3 0.1 0.04 13.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|284163585|ref|YP_003401864.1| - 0.026 14.5 0.3 0.13 12.2 0.1 2.3 1 1 1 2 2 2 0 AAA ATPase domain Arch_ATPase PF01637.13 gi|284163585|ref|YP_003401864.1| - 0.029 14.0 0.0 0.064 12.9 0.0 1.6 1 0 0 1 1 1 0 Archaeal ATPase UPF0079 PF02367.12 gi|284163585|ref|YP_003401864.1| - 0.057 13.0 0.1 0.11 12.0 0.1 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 ATP_bind_1 PF03029.12 gi|284163585|ref|YP_003401864.1| - 0.081 12.4 0.0 0.3 10.6 0.0 1.8 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_33 PF13671.1 gi|284163585|ref|YP_003401864.1| - 0.088 12.6 0.0 0.28 11.0 0.0 1.8 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|284163585|ref|YP_003401864.1| - 0.091 12.4 0.2 1.3 8.7 0.0 2.5 2 1 2 4 4 4 0 NTPase SRP54 PF00448.17 gi|284163585|ref|YP_003401864.1| - 0.12 11.7 0.0 0.22 10.9 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MMR_HSR1 PF01926.18 gi|284163585|ref|YP_003401864.1| - 0.14 12.0 0.0 0.33 10.9 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_15 PF13175.1 gi|284163585|ref|YP_003401864.1| - 0.16 10.9 0.0 2.6 7.0 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain ABC2_membrane PF01061.19 gi|284163586|ref|YP_003401865.1| - 5.5e-29 100.8 13.8 8.2e-29 100.2 9.5 1.3 1 0 0 1 1 1 1 ABC-2 type transporter CcmB PF03379.8 gi|284163586|ref|YP_003401865.1| - 0.011 15.0 4.2 0.021 14.0 2.9 1.6 1 1 0 1 1 1 0 CcmB protein ABC2_membrane_3 PF12698.2 gi|284163586|ref|YP_003401865.1| - 0.21 10.5 19.5 0.075 12.0 11.8 1.4 1 1 0 1 1 1 0 ABC-2 family transporter protein Tic20 PF09685.5 gi|284163587|ref|YP_003401866.1| - 4.9e-25 87.6 4.4 5.8e-25 87.3 3.0 1.1 1 0 0 1 1 1 1 Tic20-like protein zinc_ribbon_2 PF13240.1 gi|284163587|ref|YP_003401866.1| - 3.9e-08 32.5 3.6 6.3e-08 31.8 2.5 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|284163587|ref|YP_003401866.1| - 2.1e-07 29.9 3.8 4.2e-07 28.9 2.6 1.5 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|284163587|ref|YP_003401866.1| - 3.5e-06 26.7 0.5 5e-06 26.2 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon Nudix_N_2 PF14803.1 gi|284163587|ref|YP_003401866.1| - 0.00052 19.6 2.2 0.34 10.6 0.1 2.9 3 0 0 3 3 3 2 Nudix N-terminal UPF0547 PF10571.4 gi|284163587|ref|YP_003401866.1| - 0.0018 17.9 4.0 0.0029 17.2 2.8 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 DUF2116 PF09889.4 gi|284163587|ref|YP_003401866.1| - 0.27 11.0 6.8 0.1 12.4 1.9 2.2 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) zf-dskA_traR PF01258.12 gi|284163587|ref|YP_003401866.1| - 0.46 10.2 0.1 0.46 10.2 0.1 2.0 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger zf-NADH-PPase PF09297.6 gi|284163587|ref|YP_003401866.1| - 0.53 9.8 4.4 9.3 5.8 0.1 2.2 1 1 1 2 2 2 0 NADH pyrophosphatase zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|284163587|ref|YP_003401866.1| - 1.2 8.5 4.4 4.3 6.7 3.1 1.8 1 1 0 1 1 1 0 TFIIB zinc-binding zf-IS66 PF13005.2 gi|284163587|ref|YP_003401866.1| - 2 8.4 5.3 1.1 9.3 0.4 2.1 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 Abhydrolase_6 PF12697.2 gi|284163588|ref|YP_003401867.1| - 5.6e-24 85.2 10.8 6.9e-24 84.9 7.5 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|284163588|ref|YP_003401867.1| - 1.7e-10 40.8 2.7 2.8e-10 40.1 1.9 1.5 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|284163588|ref|YP_003401867.1| - 4.7e-10 39.4 0.0 6.9e-10 38.8 0.0 1.3 1 1 0 1 1 1 1 Alpha/beta hydrolase family Esterase PF00756.15 gi|284163588|ref|YP_003401867.1| - 0.015 14.7 0.0 0.016 14.6 0.0 1.2 1 0 0 1 1 1 0 Putative esterase Esterase_phd PF10503.4 gi|284163588|ref|YP_003401867.1| - 0.033 13.4 0.3 0.033 13.4 0.2 1.6 2 0 0 2 2 2 0 Esterase PHB depolymerase ADH_zinc_N PF00107.21 gi|284163589|ref|YP_003401868.1| - 1.3e-19 70.0 0.0 2e-19 69.4 0.0 1.2 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|284163589|ref|YP_003401868.1| - 8e-09 36.4 0.1 2.6e-08 34.8 0.0 1.8 2 0 0 2 2 2 1 Zinc-binding dehydrogenase DUF192 PF02643.10 gi|284163589|ref|YP_003401868.1| - 0.13 12.0 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized ACR, COG1430 Pro_CA PF00484.14 gi|284163590|ref|YP_003401869.1| - 2.2e-25 89.4 0.0 2.9e-25 89.0 0.0 1.1 1 0 0 1 1 1 1 Carbonic anhydrase UPF0126 PF03458.8 gi|284163591|ref|YP_003401870.1| - 5.8e-32 109.1 34.9 7.5e-19 67.1 9.0 2.5 3 0 0 3 3 3 2 UPF0126 domain DUF2309 PF10070.4 gi|284163592|ref|YP_003401871.1| - 3.6e-260 865.4 0.0 4.3e-260 865.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2309) TPR_6 PF13174.1 gi|284163592|ref|YP_003401871.1| - 3.4 8.3 4.7 14 6.4 0.0 3.6 4 0 0 4 4 4 0 Tetratricopeptide repeat Oxidored_q1 PF00361.15 gi|284163593|ref|YP_003401872.1| - 3e-37 128.3 12.7 3e-37 128.3 8.8 1.8 2 0 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|284163593|ref|YP_003401872.1| - 7e-11 41.5 0.1 7e-11 41.5 0.1 2.5 4 0 0 4 4 4 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus OCIA PF07051.6 gi|284163593|ref|YP_003401872.1| - 0.0019 17.6 1.2 0.13 11.6 0.0 2.9 2 1 1 3 3 3 2 Ovarian carcinoma immunoreactive antigen (OCIA) HTH_24 PF13412.1 gi|284163594|ref|YP_003401873.1| - 1.2e-15 56.6 0.5 1.9e-15 55.9 0.4 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|284163594|ref|YP_003401873.1| - 3.1e-11 42.6 2.1 5.1e-11 41.9 1.4 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|284163594|ref|YP_003401873.1| - 4.3e-09 35.8 0.2 9.3e-09 34.8 0.1 1.6 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|284163594|ref|YP_003401873.1| - 1.2e-06 28.0 0.0 2.2e-06 27.2 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|284163594|ref|YP_003401873.1| - 2e-06 27.2 0.0 3.4e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.14 gi|284163594|ref|YP_003401873.1| - 8.9e-06 25.5 0.3 2e-05 24.4 0.2 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_20 PF12840.2 gi|284163594|ref|YP_003401873.1| - 1e-05 25.2 0.1 2e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|284163594|ref|YP_003401873.1| - 4.8e-05 23.3 0.1 0.00013 21.9 0.0 1.7 2 0 0 2 2 1 1 Transcriptional regulator HTH_5 PF01022.15 gi|284163594|ref|YP_003401873.1| - 5.5e-05 22.7 0.0 9.5e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Sigma70_r4_2 PF08281.7 gi|284163594|ref|YP_003401873.1| - 8.1e-05 22.0 0.3 0.00017 20.9 0.2 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_DeoR PF08220.7 gi|284163594|ref|YP_003401873.1| - 0.00031 20.2 0.0 0.0036 16.7 0.1 2.2 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_Mga PF08280.6 gi|284163594|ref|YP_003401873.1| - 0.00079 19.1 0.0 0.0021 17.7 0.0 1.7 2 0 0 2 2 1 1 M protein trans-acting positive regulator (MGA) HTH domain TrmB PF01978.14 gi|284163594|ref|YP_003401873.1| - 0.0011 18.6 0.2 0.0017 18.0 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.1 gi|284163594|ref|YP_003401873.1| - 0.0015 18.0 0.2 0.0027 17.2 0.1 1.3 1 0 0 1 1 1 1 Homeodomain-like domain GntR PF00392.16 gi|284163594|ref|YP_003401873.1| - 0.0016 17.8 0.2 0.0029 17.0 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR PF01047.17 gi|284163594|ref|YP_003401873.1| - 0.0018 17.9 0.0 0.0033 17.0 0.0 1.4 1 0 0 1 1 1 1 MarR family HrcA_DNA-bdg PF03444.10 gi|284163594|ref|YP_003401873.1| - 0.0021 17.4 0.0 0.0036 16.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding DUF2250 PF10007.4 gi|284163594|ref|YP_003401873.1| - 0.0025 17.6 0.1 0.021 14.7 0.0 2.0 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_12 PF08461.5 gi|284163594|ref|YP_003401873.1| - 0.0028 17.3 1.0 0.018 14.7 0.4 2.6 2 1 0 2 2 2 1 Ribonuclease R winged-helix domain HTH_27 PF13463.1 gi|284163594|ref|YP_003401873.1| - 0.0032 17.7 0.0 0.0067 16.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_38 PF13936.1 gi|284163594|ref|YP_003401873.1| - 0.004 16.6 1.0 0.0092 15.5 0.7 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|284163594|ref|YP_003401873.1| - 0.0064 15.7 0.5 0.011 14.9 0.4 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_28 PF13518.1 gi|284163594|ref|YP_003401873.1| - 0.011 15.6 0.1 0.019 14.9 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Nuc_N PF14448.1 gi|284163594|ref|YP_003401873.1| - 0.028 13.9 0.8 0.069 12.7 0.2 1.8 2 0 0 2 2 2 0 Nuclease N terminal Put_DNA-bind_N PF06971.8 gi|284163594|ref|YP_003401873.1| - 0.034 13.9 0.8 0.07 12.9 0.6 1.5 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus RPA_C PF08784.6 gi|284163594|ref|YP_003401873.1| - 0.034 14.5 0.0 0.069 13.5 0.0 1.4 1 0 0 1 1 1 0 Replication protein A C terminal HTH_29 PF13551.1 gi|284163594|ref|YP_003401873.1| - 0.055 13.6 0.0 0.085 13.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_1 PF00126.22 gi|284163594|ref|YP_003401873.1| - 0.059 13.1 0.5 0.12 12.1 0.3 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family EAP30 PF04157.11 gi|284163594|ref|YP_003401873.1| - 0.092 11.8 0.1 0.14 11.2 0.1 1.3 1 0 0 1 1 1 0 EAP30/Vps36 family HTH_CodY PF08222.6 gi|284163594|ref|YP_003401873.1| - 0.1 11.9 0.5 0.21 10.9 0.1 1.7 2 0 0 2 2 2 0 CodY helix-turn-helix domain AsnC_trans_reg PF01037.16 gi|284163594|ref|YP_003401873.1| - 0.12 12.1 0.0 0.28 10.9 0.0 1.6 1 0 0 1 1 1 0 AsnC family DUF2513 PF10711.4 gi|284163594|ref|YP_003401873.1| - 0.13 12.3 0.0 0.21 11.6 0.0 1.4 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) DUF805 PF05656.9 gi|284163595|ref|YP_003401874.1| - 1.3e-05 24.9 0.8 1.6e-05 24.7 0.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF805) DUF1109 PF06532.6 gi|284163595|ref|YP_003401874.1| - 0.054 12.9 0.1 0.057 12.8 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1109) DUF4282 PF14110.1 gi|284163595|ref|YP_003401874.1| - 3 8.1 7.5 4 7.7 5.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) YqzM PF14141.1 gi|284163595|ref|YP_003401874.1| - 3.4 7.5 12.8 1.6 8.5 1.0 2.1 2 0 0 2 2 2 0 YqzM-like protein CSD PF00313.17 gi|284163596|ref|YP_003401875.1| - 1.4e-20 72.7 0.1 1.6e-20 72.6 0.0 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|284163596|ref|YP_003401875.1| - 0.032 13.9 0.3 0.04 13.6 0.2 1.4 1 1 0 1 1 1 0 S1-like OB_RNB PF08206.6 gi|284163596|ref|YP_003401875.1| - 0.033 13.6 2.2 0.042 13.3 1.6 1.2 1 0 0 1 1 1 0 Ribonuclease B OB domain Cupin_2 PF07883.6 gi|284163598|ref|YP_003401877.1| - 5.2e-19 67.5 0.4 8.7e-19 66.7 0.3 1.4 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.17 gi|284163598|ref|YP_003401877.1| - 2.1e-10 40.1 0.0 3.1e-10 39.6 0.0 1.2 1 0 0 1 1 1 1 Cupin AraC_binding PF02311.14 gi|284163598|ref|YP_003401877.1| - 8.3e-07 28.7 0.1 1.1e-06 28.4 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.13 gi|284163598|ref|YP_003401877.1| - 5e-05 22.9 0.0 6.4e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_3 PF05899.7 gi|284163598|ref|YP_003401877.1| - 0.00063 19.0 0.0 0.00092 18.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) CENP-C_C PF11699.3 gi|284163598|ref|YP_003401877.1| - 0.0032 17.3 0.0 0.0042 17.0 0.0 1.2 1 0 0 1 1 1 1 Mif2/CENP-C like ARD PF03079.9 gi|284163598|ref|YP_003401877.1| - 0.0069 16.3 0.0 0.0099 15.8 0.0 1.2 1 0 0 1 1 1 1 ARD/ARD' family Cupin_6 PF12852.2 gi|284163598|ref|YP_003401877.1| - 0.015 14.9 0.0 0.016 14.7 0.0 1.2 1 0 0 1 1 1 0 Cupin Cupin_7 PF12973.2 gi|284163598|ref|YP_003401877.1| - 0.022 14.5 0.0 0.029 14.2 0.0 1.2 1 0 0 1 1 1 0 ChrR Cupin-like domain EutQ PF06249.7 gi|284163598|ref|YP_003401877.1| - 0.13 11.7 0.0 0.19 11.2 0.0 1.2 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ FecCD PF01032.13 gi|284163599|ref|YP_003401878.1| - 1e-84 284.0 37.1 1.3e-84 283.6 25.7 1.1 1 0 0 1 1 1 1 FecCD transport family ABC_tran PF00005.22 gi|284163600|ref|YP_003401879.1| - 1.2e-30 106.5 0.0 1.6e-30 106.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284163600|ref|YP_003401879.1| - 2.2e-14 54.1 0.2 2.1e-06 27.9 0.1 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|284163600|ref|YP_003401879.1| - 1.2e-11 44.2 0.6 2.7e-10 39.8 0.4 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|284163600|ref|YP_003401879.1| - 9e-07 29.0 0.3 7e-06 26.2 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|284163600|ref|YP_003401879.1| - 1.3e-06 27.7 0.0 0.014 14.4 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|284163600|ref|YP_003401879.1| - 4.9e-06 25.9 0.0 1e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.4 gi|284163600|ref|YP_003401879.1| - 1.5e-05 23.7 0.1 0.061 11.9 0.0 2.9 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_16 PF13191.1 gi|284163600|ref|YP_003401879.1| - 1.8e-05 24.8 1.4 9e-05 22.5 1.0 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|284163600|ref|YP_003401879.1| - 5.6e-05 23.9 0.1 0.00011 22.9 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|284163600|ref|YP_003401879.1| - 6.7e-05 22.3 0.2 0.00048 19.5 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|284163600|ref|YP_003401879.1| - 9.9e-05 22.7 0.1 0.00013 22.3 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|284163600|ref|YP_003401879.1| - 0.00021 21.2 0.1 0.0006 19.7 0.1 1.9 1 1 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.12 gi|284163600|ref|YP_003401879.1| - 0.00046 19.7 0.0 0.018 14.5 0.0 2.1 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.7 gi|284163600|ref|YP_003401879.1| - 0.00058 19.0 0.0 0.0011 18.1 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin HD PF01966.17 gi|284163600|ref|YP_003401879.1| - 0.00064 19.7 0.8 0.0014 18.6 0.2 1.8 2 0 0 2 2 1 1 HD domain AAA_14 PF13173.1 gi|284163600|ref|YP_003401879.1| - 0.00075 19.3 0.0 0.0028 17.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|284163600|ref|YP_003401879.1| - 0.00078 18.9 0.1 0.0022 17.4 0.0 1.8 1 1 0 2 2 2 1 AAA-like domain DUF258 PF03193.11 gi|284163600|ref|YP_003401879.1| - 0.00082 18.5 0.0 0.0015 17.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_28 PF13521.1 gi|284163600|ref|YP_003401879.1| - 0.0013 18.7 0.1 0.0022 17.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|284163600|ref|YP_003401879.1| - 0.0028 17.4 0.0 0.0057 16.3 0.0 1.6 1 1 0 1 1 1 1 Archaeal ATPase Mg_chelatase PF01078.16 gi|284163600|ref|YP_003401879.1| - 0.0034 16.5 0.0 2.1 7.4 0.0 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI cobW PF02492.14 gi|284163600|ref|YP_003401879.1| - 0.0036 16.7 0.1 0.042 13.3 0.0 2.2 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|284163600|ref|YP_003401879.1| - 0.0041 16.8 0.1 0.012 15.2 0.0 1.8 2 0 0 2 2 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|284163600|ref|YP_003401879.1| - 0.0041 17.4 0.0 0.0073 16.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|284163600|ref|YP_003401879.1| - 0.0042 16.7 0.1 0.011 15.4 0.0 1.7 2 0 0 2 2 2 1 NACHT domain AAA_30 PF13604.1 gi|284163600|ref|YP_003401879.1| - 0.0042 16.6 0.0 0.0081 15.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|284163600|ref|YP_003401879.1| - 0.015 15.0 0.0 0.051 13.3 0.0 1.8 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|284163600|ref|YP_003401879.1| - 0.016 15.3 0.0 0.04 14.1 0.0 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.18 gi|284163600|ref|YP_003401879.1| - 0.019 14.8 0.1 0.037 13.9 0.0 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase SRP54 PF00448.17 gi|284163600|ref|YP_003401879.1| - 0.034 13.5 0.0 0.07 12.5 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain RNA_helicase PF00910.17 gi|284163600|ref|YP_003401879.1| - 0.046 13.9 0.0 0.075 13.2 0.0 1.4 1 0 0 1 1 1 0 RNA helicase SbcCD_C PF13558.1 gi|284163600|ref|YP_003401879.1| - 0.048 13.5 0.1 0.67 9.9 0.1 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NB-ARC PF00931.17 gi|284163600|ref|YP_003401879.1| - 0.065 12.0 0.0 0.14 11.0 0.0 1.5 2 0 0 2 2 2 0 NB-ARC domain KTI12 PF08433.5 gi|284163600|ref|YP_003401879.1| - 0.065 12.4 0.0 0.13 11.4 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 NTPase_1 PF03266.10 gi|284163600|ref|YP_003401879.1| - 0.078 12.6 0.0 0.34 10.5 0.0 2.0 2 0 0 2 2 2 0 NTPase APS_kinase PF01583.15 gi|284163600|ref|YP_003401879.1| - 0.078 12.6 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase T2SE PF00437.15 gi|284163600|ref|YP_003401879.1| - 0.084 11.7 0.0 0.14 11.0 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_19 PF13245.1 gi|284163600|ref|YP_003401879.1| - 0.098 12.4 0.0 0.29 10.9 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain AAA_24 PF13479.1 gi|284163600|ref|YP_003401879.1| - 0.13 11.8 0.0 0.21 11.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain Peripla_BP_2 PF01497.13 gi|284163601|ref|YP_003401880.1| - 6.1e-16 58.2 0.0 8.6e-16 57.7 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.4 gi|284163601|ref|YP_003401880.1| - 0.0016 18.2 3.0 0.0039 17.0 2.1 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence SHNi-TPR PF10516.4 gi|284163601|ref|YP_003401880.1| - 0.041 13.1 0.9 0.085 12.1 0.2 1.9 2 0 0 2 2 2 0 SHNi-TPR MCPsignal PF00015.16 gi|284163602|ref|YP_003401881.1| - 7.3e-34 117.1 64.8 3.5e-31 108.4 26.8 3.5 2 1 1 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|284163602|ref|YP_003401881.1| - 8.6e-14 51.4 1.4 8.6e-14 51.4 1.0 6.1 7 0 0 7 7 7 2 HAMP domain DUF948 PF06103.6 gi|284163602|ref|YP_003401881.1| - 0.2 11.5 26.6 0.14 12.0 1.5 5.1 3 2 2 5 5 5 0 Bacterial protein of unknown function (DUF948) GAS PF13851.1 gi|284163602|ref|YP_003401881.1| - 0.61 9.2 20.5 4.2 6.5 2.8 4.5 3 1 1 4 4 4 0 Growth-arrest specific micro-tubule binding Pox_F11 PF04943.7 gi|284163602|ref|YP_003401881.1| - 0.94 8.2 4.6 0.24 10.1 0.4 1.8 1 1 1 2 2 2 0 Poxvirus F11 protein DUF1664 PF07889.7 gi|284163602|ref|YP_003401881.1| - 1.3 8.7 23.1 0.64 9.8 1.1 4.8 2 1 1 4 4 4 0 Protein of unknown function (DUF1664) AAA_27 PF13514.1 gi|284163602|ref|YP_003401881.1| - 1.9 6.0 58.7 1.5 6.3 32.0 2.2 1 1 1 2 2 2 0 AAA domain Reo_sigmaC PF04582.7 gi|284163602|ref|YP_003401881.1| - 2.1 7.4 29.3 2 7.4 5.6 3.4 1 1 0 2 2 2 0 Reovirus sigma C capsid protein Laminin_II PF06009.7 gi|284163602|ref|YP_003401881.1| - 7.8 6.2 41.6 1 9.1 4.2 5.7 4 2 2 6 6 6 0 Laminin Domain II NPV_P10 PF05531.7 gi|284163602|ref|YP_003401881.1| - 8 6.7 25.9 8 6.7 1.4 5.5 1 1 2 4 4 4 0 Nucleopolyhedrovirus P10 protein Spc7 PF08317.6 gi|284163602|ref|YP_003401881.1| - 8.2 4.9 26.7 2.8 6.5 5.5 3.6 1 1 1 3 3 3 0 Spc7 kinetochore protein DEAD PF00270.24 gi|284163603|ref|YP_003401882.1| - 2.5e-23 82.4 0.0 5.8e-23 81.2 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|284163603|ref|YP_003401882.1| - 2.6e-13 49.6 0.0 6.5e-13 48.3 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|284163603|ref|YP_003401882.1| - 6.6e-07 29.3 0.0 1.4e-06 28.2 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|284163603|ref|YP_003401882.1| - 0.037 12.8 0.0 0.072 11.8 0.0 1.4 1 1 0 1 1 1 0 SNF2 family N-terminal domain Kri1 PF05178.7 gi|284163604|ref|YP_003401883.1| - 0.057 13.7 0.0 0.1 12.9 0.0 1.4 1 0 0 1 1 1 0 KRI1-like family BofA PF07441.6 gi|284163605|ref|YP_003401884.1| - 0.004 17.1 23.1 0.0053 16.7 16.0 1.1 1 0 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA Wzt_C PF14524.1 gi|284163606|ref|YP_003401885.1| - 0.0015 18.2 0.0 0.0025 17.5 0.0 1.3 1 0 0 1 1 1 1 Wzt C-terminal domain Gram_pos_anchor PF00746.16 gi|284163606|ref|YP_003401885.1| - 9.8 6.1 6.7 1.6 8.5 0.1 2.5 2 0 0 2 2 2 0 Gram positive anchor AstE_AspA PF04952.9 gi|284163607|ref|YP_003401886.1| - 4.8e-14 51.9 0.0 8.1e-14 51.1 0.0 1.3 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M14 PF00246.19 gi|284163607|ref|YP_003401886.1| - 8.3e-08 32.1 1.0 1e-06 28.5 0.7 2.1 1 1 0 1 1 1 1 Zinc carboxypeptidase DUF2119 PF09892.4 gi|284163607|ref|YP_003401886.1| - 0.014 14.6 0.0 0.14 11.4 0.0 2.0 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2119) TAT_signal PF10518.4 gi|284163607|ref|YP_003401886.1| - 0.02 14.8 1.8 0.047 13.7 1.3 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Lambda_CIII PF02061.11 gi|284163608|ref|YP_003401887.1| - 0.51 10.3 2.5 1 9.4 1.7 1.4 1 0 0 1 1 1 0 Lambda Phage CIII DUF502 PF04367.8 gi|284163610|ref|YP_003401889.1| - 1.3e-22 79.6 0.1 1.3e-22 79.6 0.1 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF502) Phage_holin_4 PF05105.7 gi|284163610|ref|YP_003401889.1| - 0.41 10.3 2.7 0.83 9.3 1.9 1.6 1 1 0 1 1 1 0 Holin family MCM PF00493.18 gi|284163611|ref|YP_003401890.1| - 4e-131 436.7 0.2 5.3e-131 436.3 0.2 1.1 1 0 0 1 1 1 1 MCM2/3/5 family MCM_N PF14551.1 gi|284163611|ref|YP_003401890.1| - 9.3e-15 55.1 5.0 1.4e-14 54.6 0.2 3.0 2 1 0 2 2 2 1 MCM N-terminal domain Mg_chelatase PF01078.16 gi|284163611|ref|YP_003401890.1| - 1.7e-10 40.4 0.0 6.4e-06 25.4 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|284163611|ref|YP_003401890.1| - 6.5e-06 25.9 0.0 1.7e-05 24.5 0.0 1.8 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|284163611|ref|YP_003401890.1| - 0.00053 19.5 0.1 0.0095 15.4 0.1 2.2 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA PF00004.24 gi|284163611|ref|YP_003401890.1| - 0.0047 17.1 0.3 0.019 15.1 0.0 2.3 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|284163611|ref|YP_003401890.1| - 0.0097 15.9 0.8 0.046 13.6 0.1 2.4 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|284163611|ref|YP_003401890.1| - 0.023 14.8 0.1 0.094 12.8 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_3 PF07726.6 gi|284163611|ref|YP_003401890.1| - 0.072 12.7 0.0 0.31 10.6 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Zn-ribbon_8 PF09723.5 gi|284163611|ref|YP_003401890.1| - 0.098 12.6 1.9 0.24 11.3 1.3 1.7 1 0 0 1 1 1 0 Zinc ribbon domain GTPase_Cys_C PF12631.2 gi|284163611|ref|YP_003401890.1| - 0.11 12.9 0.6 17 5.9 0.0 3.5 3 0 0 3 3 3 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE AAA_19 PF13245.1 gi|284163611|ref|YP_003401890.1| - 0.12 12.1 0.8 0.79 9.5 0.0 2.3 2 0 0 2 2 2 0 Part of AAA domain TFIIB PF00382.14 gi|284163612|ref|YP_003401891.1| - 7.6e-27 92.9 0.1 2.4e-13 49.6 0.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|284163612|ref|YP_003401891.1| - 4.6e-10 38.6 2.7 7.5e-10 37.9 1.8 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding DZR PF12773.2 gi|284163612|ref|YP_003401891.1| - 0.0058 16.4 0.4 0.012 15.4 0.3 1.5 1 0 0 1 1 1 1 Double zinc ribbon zinc-ribbons_6 PF07191.7 gi|284163612|ref|YP_003401891.1| - 0.039 13.7 0.4 0.065 13.0 0.3 1.3 1 0 0 1 1 1 0 zinc-ribbons TEX12 PF15219.1 gi|284163613|ref|YP_003401892.1| - 0.054 13.4 0.0 0.062 13.2 0.0 1.1 1 0 0 1 1 1 0 Testis-expressed 12 cwf21 PF08312.7 gi|284163613|ref|YP_003401892.1| - 0.2 11.5 1.6 0.55 10.1 1.1 1.8 1 1 0 1 1 1 0 cwf21 domain PALP PF00291.20 gi|284163614|ref|YP_003401893.1| - 4e-63 213.4 3.5 4.7e-63 213.2 2.4 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme C1_2 PF03107.11 gi|284163614|ref|YP_003401893.1| - 0.099 12.7 2.2 0.17 11.9 1.5 1.3 1 0 0 1 1 1 0 C1 domain TrmB PF01978.14 gi|284163615|ref|YP_003401894.1| - 4e-12 45.6 0.0 6e-12 45.1 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|284163615|ref|YP_003401894.1| - 2.1e-08 33.7 0.6 3.4e-08 33.0 0.4 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|284163615|ref|YP_003401894.1| - 2.7e-08 34.0 0.4 5.1e-06 26.7 0.3 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR PF01047.17 gi|284163615|ref|YP_003401894.1| - 8.8e-08 31.7 0.1 1.5e-07 31.0 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|284163615|ref|YP_003401894.1| - 1.3e-07 31.0 2.2 3.7e-07 29.6 0.4 2.3 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|284163615|ref|YP_003401894.1| - 2.3e-05 24.0 0.1 4.2e-05 23.2 0.1 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_5 PF01022.15 gi|284163615|ref|YP_003401894.1| - 4.7e-05 22.9 0.0 8.6e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family GntR PF00392.16 gi|284163615|ref|YP_003401894.1| - 0.00011 21.6 0.4 0.00024 20.4 0.3 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_11 PF08279.7 gi|284163615|ref|YP_003401894.1| - 0.00018 21.0 0.1 0.00029 20.4 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|284163615|ref|YP_003401894.1| - 0.00021 21.0 0.2 0.0004 20.1 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|284163615|ref|YP_003401894.1| - 0.0011 18.3 0.0 0.0021 17.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.14 gi|284163615|ref|YP_003401894.1| - 0.0019 18.0 0.0 0.042 13.7 0.0 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Penicillinase_R PF03965.11 gi|284163615|ref|YP_003401894.1| - 0.0074 16.3 0.0 0.011 15.7 0.0 1.3 1 0 0 1 1 1 1 Penicillinase repressor Phage_rep_org_N PF09681.5 gi|284163615|ref|YP_003401894.1| - 0.0075 15.8 0.0 0.017 14.6 0.0 1.6 1 1 1 2 2 2 1 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_23 PF13384.1 gi|284163615|ref|YP_003401894.1| - 0.03 13.9 0.2 0.055 13.1 0.1 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_38 PF13936.1 gi|284163615|ref|YP_003401894.1| - 0.031 13.8 0.0 0.05 13.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.15 gi|284163615|ref|YP_003401894.1| - 0.032 14.3 0.0 0.05 13.7 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_41 PF14502.1 gi|284163615|ref|YP_003401894.1| - 0.056 13.0 0.0 0.15 11.6 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_ECF PF07638.6 gi|284163615|ref|YP_003401894.1| - 0.11 12.1 0.1 0.19 11.3 0.1 1.4 1 1 0 1 1 1 0 ECF sigma factor Sulfolobus_pRN PF05584.6 gi|284163615|ref|YP_003401894.1| - 0.13 12.2 0.1 0.2 11.6 0.0 1.2 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein HTH_31 PF13560.1 gi|284163615|ref|YP_003401894.1| - 0.64 10.2 4.0 0.28 11.4 1.2 1.6 2 0 0 2 2 1 0 Helix-turn-helix domain DUF3147 PF11345.3 gi|284163617|ref|YP_003401896.1| - 0.0026 17.7 11.6 0.0026 17.7 8.0 1.7 2 1 0 2 2 2 1 Protein of unknown function (DUF3147) YqhR PF11085.3 gi|284163617|ref|YP_003401896.1| - 0.033 13.7 6.9 0.068 12.6 4.8 1.6 1 1 0 1 1 1 0 Conserved membrane protein YqhR DUF2938 PF11158.3 gi|284163617|ref|YP_003401896.1| - 0.086 12.1 17.7 0.012 14.9 8.5 1.8 1 1 0 2 2 2 0 Protein of unknown function (DUF2938) DUF1440 PF07274.7 gi|284163617|ref|YP_003401896.1| - 0.71 9.8 6.4 0.88 9.5 2.4 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1440) OTCace_N PF02729.16 gi|284163618|ref|YP_003401897.1| - 1e-51 174.2 0.1 2.6e-51 173.0 0.0 1.6 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|284163618|ref|YP_003401897.1| - 4.6e-47 159.8 0.0 6.9e-47 159.2 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Peptidase_M20 PF01546.23 gi|284163619|ref|YP_003401898.1| - 4e-27 94.9 0.1 5.5e-27 94.5 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|284163619|ref|YP_003401898.1| - 5.1e-05 22.9 0.0 8.2e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|284163619|ref|YP_003401898.1| - 0.0035 17.1 0.1 0.01 15.6 0.1 1.8 1 1 0 1 1 1 1 Peptidase family M28 Aminotran_3 PF00202.16 gi|284163620|ref|YP_003401899.1| - 8.3e-94 314.1 0.1 1e-93 313.9 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|284163620|ref|YP_003401899.1| - 0.00036 19.6 0.0 0.00052 19.0 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|284163620|ref|YP_003401899.1| - 0.0029 16.7 0.0 0.0051 16.0 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase AA_kinase PF00696.23 gi|284163621|ref|YP_003401900.1| - 9.1e-29 100.6 3.3 1.1e-28 100.3 2.3 1.1 1 0 0 1 1 1 1 Amino acid kinase family GCV_H PF01597.14 gi|284163621|ref|YP_003401900.1| - 0.14 11.8 1.2 0.3 10.7 0.1 2.0 2 0 0 2 2 2 0 Glycine cleavage H-protein Semialdhyde_dh PF01118.19 gi|284163622|ref|YP_003401901.1| - 9.7e-29 100.1 0.0 1.9e-28 99.2 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|284163622|ref|YP_003401901.1| - 1.8e-08 34.4 0.0 2.9e-08 33.7 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.15 gi|284163622|ref|YP_003401901.1| - 0.074 12.9 0.1 0.19 11.6 0.0 1.7 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus RimK PF08443.6 gi|284163623|ref|YP_003401902.1| - 8e-42 142.8 0.0 1.2e-41 142.2 0.0 1.3 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|284163623|ref|YP_003401902.1| - 1.4e-20 73.7 0.2 2.7e-20 72.8 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|284163623|ref|YP_003401902.1| - 1.1e-11 44.8 0.0 1.6e-11 44.3 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|284163623|ref|YP_003401902.1| - 4e-11 42.2 0.0 6.3e-11 41.5 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon GSH-S_ATP PF02955.11 gi|284163623|ref|YP_003401902.1| - 1e-07 31.2 0.0 1.5e-07 30.7 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp PF02222.17 gi|284163623|ref|YP_003401902.1| - 1.6e-06 27.5 0.4 2.4e-05 23.7 0.1 2.6 2 1 0 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|284163623|ref|YP_003401902.1| - 3.3e-06 26.5 0.0 8.7e-06 25.1 0.0 1.7 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_5 PF13549.1 gi|284163623|ref|YP_003401902.1| - 8.7e-06 25.1 0.1 0.00024 20.3 0.0 2.5 1 1 1 2 2 2 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|284163623|ref|YP_003401902.1| - 0.013 14.8 0.0 0.078 12.3 0.0 2.1 1 1 0 1 1 1 0 D-ala D-ala ligase C-terminus zinc_ribbon_2 PF13240.1 gi|284163624|ref|YP_003401903.1| - 0.00058 19.2 0.3 0.46 10.0 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|284163624|ref|YP_003401903.1| - 0.00098 18.5 1.8 0.0034 16.8 1.2 1.8 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.1 gi|284163624|ref|YP_003401903.1| - 0.016 14.4 0.2 4.4 6.6 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|284163624|ref|YP_003401903.1| - 0.019 14.7 0.4 0.05 13.4 0.3 1.7 1 1 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|284163624|ref|YP_003401903.1| - 0.026 14.4 1.2 0.05 13.5 0.8 1.5 1 1 0 1 1 1 0 Zinc ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|284163624|ref|YP_003401903.1| - 0.033 13.9 1.4 0.12 12.1 1.0 1.8 1 1 1 2 2 2 0 PhnA Zinc-Ribbon zf-HYPF PF07503.7 gi|284163624|ref|YP_003401903.1| - 0.033 13.5 0.0 6 6.3 0.0 2.1 2 0 0 2 2 2 0 HypF finger YhfH PF14149.1 gi|284163624|ref|YP_003401903.1| - 0.046 13.5 1.9 3.1 7.6 0.1 2.2 2 0 0 2 2 2 0 YhfH-like protein HypA PF01155.14 gi|284163624|ref|YP_003401903.1| - 0.05 13.2 0.4 0.055 13.1 0.3 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Nudix_N_2 PF14803.1 gi|284163624|ref|YP_003401903.1| - 0.05 13.2 1.5 6.7 6.4 0.1 2.3 2 1 0 2 2 2 0 Nudix N-terminal Prok-RING_1 PF14446.1 gi|284163624|ref|YP_003401903.1| - 0.052 13.2 4.8 0.11 12.2 3.3 1.5 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 TF_Zn_Ribbon PF08271.7 gi|284163624|ref|YP_003401903.1| - 0.055 12.7 3.2 0.076 12.3 2.2 1.3 1 0 0 1 1 1 0 TFIIB zinc-binding Desulfoferrod_N PF06397.7 gi|284163624|ref|YP_003401903.1| - 0.088 12.2 2.3 0.74 9.2 0.2 2.1 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain DUF2387 PF09526.5 gi|284163624|ref|YP_003401903.1| - 0.096 12.6 3.7 2.7 7.9 0.3 2.1 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) zinc_ribbon_5 PF13719.1 gi|284163624|ref|YP_003401903.1| - 0.12 11.9 0.3 0.41 10.2 0.2 1.7 1 1 1 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|284163624|ref|YP_003401903.1| - 0.14 11.8 0.4 0.19 11.4 0.3 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain RNA_POL_M_15KD PF02150.11 gi|284163624|ref|YP_003401903.1| - 0.21 11.3 1.6 1.4 8.6 1.1 2.0 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit Lar_restr_allev PF14354.1 gi|284163624|ref|YP_003401903.1| - 0.22 11.8 3.1 0.95 9.8 0.6 2.0 1 1 1 2 2 2 0 Restriction alleviation protein Lar DUF1610 PF07754.6 gi|284163624|ref|YP_003401903.1| - 1.6 8.9 4.8 1.6 8.9 0.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Lyase_1 PF00206.15 gi|284163625|ref|YP_003401904.1| - 2.7e-52 177.9 1.4 1.5e-51 175.4 0.1 2.5 2 1 0 2 2 2 1 Lyase ASL_C2 PF14698.1 gi|284163625|ref|YP_003401904.1| - 6.5e-10 38.9 1.8 6.5e-10 38.9 1.3 2.9 2 1 0 2 2 2 1 Argininosuccinate lyase C-terminal Arginosuc_synth PF00764.14 gi|284163626|ref|YP_003401905.1| - 1.6e-140 468.5 0.0 1.9e-140 468.3 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase Asn_synthase PF00733.16 gi|284163626|ref|YP_003401905.1| - 1.8e-06 27.6 0.1 4.4e-05 23.0 0.0 2.1 2 0 0 2 2 2 1 Asparagine synthase QueC PF06508.8 gi|284163626|ref|YP_003401905.1| - 0.00016 21.0 0.0 0.00028 20.2 0.0 1.4 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|284163626|ref|YP_003401905.1| - 0.0023 16.5 0.0 0.0043 15.6 0.0 1.4 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.12 gi|284163626|ref|YP_003401905.1| - 0.0057 15.5 0.0 0.0086 15.0 0.0 1.2 1 0 0 1 1 1 1 NAD synthase Acyl-CoA_dh_2 PF08028.6 gi|284163626|ref|YP_003401905.1| - 0.37 11.0 3.3 5.7 7.1 0.2 3.2 3 1 1 4 4 4 0 Acyl-CoA dehydrogenase, C-terminal domain Tol_Tol_Ttg2 PF05494.7 gi|284163627|ref|YP_003401906.1| - 0.084 12.4 0.2 0.13 11.7 0.1 1.3 1 0 0 1 1 1 0 Toluene tolerance, Ttg2 DUF1129 PF06570.6 gi|284163628|ref|YP_003401907.1| - 0.18 11.1 1.8 0.19 11.0 1.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) BRI3BP PF14965.1 gi|284163628|ref|YP_003401907.1| - 2.6 7.3 7.1 2.9 7.2 4.9 1.1 1 0 0 1 1 1 0 Negative regulator of p53/TP53 Apq12 PF12716.2 gi|284163628|ref|YP_003401907.1| - 5.4 6.7 8.2 7.1 6.4 5.7 1.2 1 0 0 1 1 1 0 Nuclear pore assembly and biogenesis 2_5_RNA_ligase2 PF13563.1 gi|284163629|ref|YP_003401908.1| - 2.6e-16 59.7 0.0 3.4e-16 59.3 0.0 1.2 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily LigT_PEase PF02834.11 gi|284163629|ref|YP_003401908.1| - 1.6e-06 27.9 0.1 0.0048 16.8 0.0 2.5 2 1 0 2 2 2 2 LigT like Phosphoesterase AKAP7_NLS PF10469.4 gi|284163629|ref|YP_003401908.1| - 3.3e-05 23.6 0.0 4e-05 23.4 0.0 1.1 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain Helicase_C_2 PF13307.1 gi|284163630|ref|YP_003401909.1| - 3.7e-31 108.3 0.0 1.3e-30 106.6 0.0 1.9 2 0 0 2 2 2 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|284163630|ref|YP_003401909.1| - 1.4e-23 83.2 0.4 3.8e-23 81.7 0.3 1.7 1 1 0 1 1 1 1 DEAD_2 DEAD PF00270.24 gi|284163630|ref|YP_003401909.1| - 4.9e-09 35.9 0.0 2.4e-05 23.8 0.0 3.2 3 0 0 3 3 3 2 DEAD/DEAH box helicase ResIII PF04851.10 gi|284163630|ref|YP_003401909.1| - 1.4e-05 25.0 3.5 5.5e-05 23.0 0.9 2.5 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit KaiC PF06745.8 gi|284163630|ref|YP_003401909.1| - 0.00075 18.6 0.0 0.0014 17.8 0.0 1.4 1 0 0 1 1 1 1 KaiC AAA_34 PF13872.1 gi|284163630|ref|YP_003401909.1| - 0.006 15.3 0.2 0.012 14.4 0.0 1.5 2 0 0 2 2 2 1 P-loop containing NTP hydrolase pore-1 Zot PF05707.7 gi|284163630|ref|YP_003401909.1| - 0.011 15.2 0.1 1.6 8.1 0.0 2.3 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) PhoH PF02562.11 gi|284163630|ref|YP_003401909.1| - 0.019 14.2 0.0 0.063 12.5 0.0 1.8 2 0 0 2 2 2 0 PhoH-like protein DUF2075 PF09848.4 gi|284163630|ref|YP_003401909.1| - 0.064 12.2 0.2 1.4 7.7 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) DUF523 PF04463.7 gi|284163630|ref|YP_003401909.1| - 0.093 12.4 0.0 0.21 11.3 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF523) ArsA_ATPase PF02374.10 gi|284163630|ref|YP_003401909.1| - 0.14 11.1 0.0 0.3 10.0 0.0 1.6 1 0 0 1 1 1 0 Anion-transporting ATPase TPR_MLP1_2 PF07926.7 gi|284163630|ref|YP_003401909.1| - 0.96 9.1 4.8 1 9.1 0.6 2.5 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein Cation_efflux PF01545.16 gi|284163632|ref|YP_003401911.1| - 1.6e-45 155.4 0.1 1.8e-45 155.2 0.0 1.0 1 0 0 1 1 1 1 Cation efflux family Metallophos_2 PF12850.2 gi|284163633|ref|YP_003401912.1| - 1.1e-23 83.8 0.1 1.4e-23 83.4 0.1 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|284163633|ref|YP_003401912.1| - 8e-07 28.6 0.1 0.0053 16.1 0.0 2.4 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase NPV_P10 PF05531.7 gi|284163634|ref|YP_003401913.1| - 0.00017 21.7 1.9 0.029 14.6 0.0 2.4 1 1 1 2 2 2 1 Nucleopolyhedrovirus P10 protein ADIP PF11559.3 gi|284163634|ref|YP_003401913.1| - 0.00024 21.0 3.7 0.068 13.0 0.5 2.3 1 1 1 2 2 2 2 Afadin- and alpha -actinin-Binding IncA PF04156.9 gi|284163634|ref|YP_003401913.1| - 0.00056 19.5 0.6 0.00083 19.0 0.4 1.2 1 0 0 1 1 1 1 IncA protein PspA_IM30 PF04012.7 gi|284163634|ref|YP_003401913.1| - 0.00091 18.6 1.8 0.0017 17.7 1.3 1.6 1 0 0 1 1 1 1 PspA/IM30 family TMF_DNA_bd PF12329.3 gi|284163634|ref|YP_003401913.1| - 0.0019 17.9 2.3 0.18 11.6 0.1 2.4 2 0 0 2 2 2 1 TATA element modulatory factor 1 DNA binding Lebercilin PF15619.1 gi|284163634|ref|YP_003401913.1| - 0.0021 17.5 2.0 0.003 17.0 1.4 1.2 1 0 0 1 1 1 1 Ciliary protein causing Leber congenital amaurosis disease DASH_Spc34 PF08657.5 gi|284163634|ref|YP_003401913.1| - 0.0036 17.0 1.3 0.0061 16.2 0.9 1.3 1 0 0 1 1 1 1 DASH complex subunit Spc34 HSBP1 PF06825.7 gi|284163634|ref|YP_003401913.1| - 0.0038 16.7 0.7 0.41 10.2 0.5 2.6 1 1 0 1 1 1 1 Heat shock factor binding protein 1 Reo_sigmaC PF04582.7 gi|284163634|ref|YP_003401913.1| - 0.0038 16.4 0.3 0.0054 15.9 0.2 1.3 1 0 0 1 1 1 1 Reovirus sigma C capsid protein Lzipper-MIP1 PF14389.1 gi|284163634|ref|YP_003401913.1| - 0.004 17.2 1.4 0.008 16.2 1.0 1.4 1 0 0 1 1 1 1 Leucine-zipper of ternary complex factor MIP1 CENP-F_leu_zip PF10473.4 gi|284163634|ref|YP_003401913.1| - 0.0069 16.2 4.7 0.29 11.0 0.6 2.2 1 1 1 2 2 2 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 SlyX PF04102.7 gi|284163634|ref|YP_003401913.1| - 0.011 16.0 4.3 0.34 11.3 0.7 2.8 1 1 1 2 2 2 0 SlyX DASH_Dad2 PF08654.5 gi|284163634|ref|YP_003401913.1| - 0.012 15.5 1.0 0.046 13.7 0.7 1.9 1 1 0 1 1 1 0 DASH complex subunit Dad2 AAA_27 PF13514.1 gi|284163634|ref|YP_003401913.1| - 0.012 13.3 5.9 0.014 13.1 4.1 1.2 1 0 0 1 1 1 0 AAA domain Spectrin PF00435.16 gi|284163634|ref|YP_003401913.1| - 0.012 15.8 2.3 0.057 13.7 1.6 2.0 1 1 0 1 1 1 0 Spectrin repeat DUF869 PF05911.6 gi|284163634|ref|YP_003401913.1| - 0.013 13.7 1.8 0.019 13.2 1.3 1.1 1 0 0 1 1 1 0 Plant protein of unknown function (DUF869) Prefoldin PF02996.12 gi|284163634|ref|YP_003401913.1| - 0.014 15.0 1.6 1.4 8.5 0.0 2.3 2 0 0 2 2 2 0 Prefoldin subunit BLOC1_2 PF10046.4 gi|284163634|ref|YP_003401913.1| - 0.015 15.4 3.2 0.049 13.7 0.9 2.5 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF4140 PF13600.1 gi|284163634|ref|YP_003401913.1| - 0.02 15.3 10.7 0.19 12.1 1.3 2.6 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) XhlA PF10779.4 gi|284163634|ref|YP_003401913.1| - 0.02 14.7 4.2 1.3 9.0 2.9 2.5 1 1 0 1 1 1 0 Haemolysin XhlA DUF4201 PF13870.1 gi|284163634|ref|YP_003401913.1| - 0.022 14.1 0.2 0.031 13.6 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) Laminin_II PF06009.7 gi|284163634|ref|YP_003401913.1| - 0.037 13.7 0.4 0.059 13.1 0.3 1.4 1 0 0 1 1 1 0 Laminin Domain II DUF4200 PF13863.1 gi|284163634|ref|YP_003401913.1| - 0.043 13.7 0.3 0.12 12.3 0.2 1.7 2 0 0 2 2 1 0 Domain of unknown function (DUF4200) Fmp27_WPPW PF10359.4 gi|284163634|ref|YP_003401913.1| - 0.045 12.1 0.8 0.061 11.7 0.5 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Sipho_Gp157 PF05565.6 gi|284163634|ref|YP_003401913.1| - 0.058 12.9 0.3 0.098 12.2 0.2 1.5 1 0 0 1 1 1 0 Siphovirus Gp157 Prefoldin_2 PF01920.15 gi|284163634|ref|YP_003401913.1| - 0.063 13.0 5.6 1.2 8.9 0.1 2.2 1 1 1 2 2 2 0 Prefoldin subunit HOOK PF05622.7 gi|284163634|ref|YP_003401913.1| - 0.064 11.0 0.9 0.082 10.7 0.6 1.0 1 0 0 1 1 1 0 HOOK protein TMCO5 PF14992.1 gi|284163634|ref|YP_003401913.1| - 0.069 12.2 1.6 0.097 11.7 1.1 1.2 1 0 0 1 1 1 0 TMCO5 family DUF904 PF06005.7 gi|284163634|ref|YP_003401913.1| - 0.084 13.1 2.1 0.53 10.6 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF904) Uds1 PF15456.1 gi|284163634|ref|YP_003401913.1| - 0.092 12.7 1.5 0.22 11.5 1.0 1.7 1 0 0 1 1 1 0 Up-regulated During Septation Tropomyosin_1 PF12718.2 gi|284163634|ref|YP_003401913.1| - 0.095 12.5 6.8 0.33 10.8 4.7 1.7 1 1 0 1 1 1 0 Tropomyosin like Dynamitin PF04912.9 gi|284163634|ref|YP_003401913.1| - 0.098 11.4 4.5 0.62 8.8 0.8 2.1 1 1 1 2 2 2 0 Dynamitin Erythro-docking PF09277.6 gi|284163634|ref|YP_003401913.1| - 0.1 12.3 7.5 0.26 11.0 0.1 3.0 3 0 0 3 3 2 0 Erythronolide synthase, docking V_ATPase_I PF01496.14 gi|284163634|ref|YP_003401913.1| - 0.11 10.3 0.2 0.15 9.9 0.1 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DivIC PF04977.10 gi|284163634|ref|YP_003401913.1| - 0.12 11.8 3.5 1.5 8.3 0.6 2.3 1 1 1 2 2 2 0 Septum formation initiator AAA_13 PF13166.1 gi|284163634|ref|YP_003401913.1| - 0.12 10.8 0.1 0.15 10.4 0.1 1.1 1 0 0 1 1 1 0 AAA domain Not3 PF04065.10 gi|284163634|ref|YP_003401913.1| - 0.12 11.6 0.3 0.18 11.0 0.2 1.2 1 0 0 1 1 1 0 Not1 N-terminal domain, CCR4-Not complex component Matrilin_ccoil PF10393.4 gi|284163634|ref|YP_003401913.1| - 0.19 11.1 5.8 0.1 11.9 1.1 2.5 3 0 0 3 3 3 0 Trimeric coiled-coil oligomerisation domain of matrilin APG6 PF04111.7 gi|284163634|ref|YP_003401913.1| - 0.21 10.5 0.8 0.29 10.1 0.6 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 Nsp1_C PF05064.8 gi|284163634|ref|YP_003401913.1| - 0.23 11.1 1.3 3 7.5 0.9 2.2 1 1 0 1 1 1 0 Nsp1-like C-terminal region SNARE PF05739.14 gi|284163634|ref|YP_003401913.1| - 0.23 11.1 4.8 14 5.4 0.1 3.3 1 1 2 3 3 2 0 SNARE domain PspB PF06667.7 gi|284163634|ref|YP_003401913.1| - 0.24 11.3 9.3 1.2 9.1 0.3 3.1 1 1 1 3 3 3 0 Phage shock protein B Baculo_PEP_C PF04513.7 gi|284163634|ref|YP_003401913.1| - 0.28 10.9 2.0 0.65 9.8 1.4 1.6 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Tropomyosin PF00261.15 gi|284163634|ref|YP_003401913.1| - 0.3 10.1 8.5 0.79 8.7 5.9 1.7 1 1 0 1 1 1 0 Tropomyosin FUSC PF04632.7 gi|284163634|ref|YP_003401913.1| - 0.33 9.3 4.7 0.48 8.8 3.3 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family Cep57_CLD_2 PF14197.1 gi|284163634|ref|YP_003401913.1| - 0.45 10.4 11.4 0.11 12.4 4.7 2.2 2 1 0 2 2 2 0 Centrosome localisation domain of PPC89 Seryl_tRNA_N PF02403.17 gi|284163634|ref|YP_003401913.1| - 0.71 9.9 3.4 30 4.6 2.7 2.6 2 1 0 2 2 1 0 Seryl-tRNA synthetase N-terminal domain DUF4164 PF13747.1 gi|284163634|ref|YP_003401913.1| - 0.75 9.9 11.7 5.8 7.1 0.6 2.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4164) EMP24_GP25L PF01105.19 gi|284163634|ref|YP_003401913.1| - 0.78 9.4 2.2 19 4.8 1.5 2.2 1 1 0 1 1 1 0 emp24/gp25L/p24 family/GOLD CorA PF01544.13 gi|284163634|ref|YP_003401913.1| - 1.3 7.9 5.0 1.9 7.4 3.5 1.2 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein Sugarporin_N PF11471.3 gi|284163634|ref|YP_003401913.1| - 1.4 8.6 7.7 13 5.5 0.1 2.4 2 0 0 2 2 2 0 Maltoporin periplasmic N-terminal extension Striatin PF08232.7 gi|284163634|ref|YP_003401913.1| - 3.6 7.9 5.6 5.9 7.2 0.1 2.5 2 1 1 3 3 2 0 Striatin family CENP-Q PF13094.1 gi|284163634|ref|YP_003401913.1| - 8.1 6.4 10.5 3.2 7.7 0.4 2.5 1 1 1 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit ATG16 PF08614.6 gi|284163634|ref|YP_003401913.1| - 8.8 6.1 10.4 5.9 6.6 1.1 2.5 2 1 1 3 3 2 0 Autophagy protein 16 (ATG16) AAA_10 PF12846.2 gi|284163635|ref|YP_003401914.1| - 2.4e-14 53.4 0.0 3.4e-06 26.7 0.0 2.1 1 1 1 2 2 2 2 AAA-like domain DUF87 PF01935.12 gi|284163635|ref|YP_003401914.1| - 4.1e-07 30.0 0.0 3.6e-06 26.9 0.0 2.1 1 1 0 2 2 2 1 Domain of unknown function DUF87 FtsK_SpoIIIE PF01580.13 gi|284163635|ref|YP_003401914.1| - 0.00021 20.8 0.0 0.05 13.0 0.0 2.3 2 0 0 2 2 2 2 FtsK/SpoIIIE family DUF853 PF05872.7 gi|284163635|ref|YP_003401914.1| - 0.0062 14.9 0.0 1.4 7.1 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) AAA_16 PF13191.1 gi|284163635|ref|YP_003401914.1| - 0.01 15.8 0.2 0.17 11.8 0.0 2.5 2 1 0 2 2 2 0 AAA ATPase domain TrwB_AAD_bind PF10412.4 gi|284163635|ref|YP_003401914.1| - 0.02 13.5 0.0 1.3 7.6 0.0 2.1 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.1 gi|284163635|ref|YP_003401914.1| - 0.022 14.9 0.0 0.91 9.6 0.0 2.7 2 1 0 2 2 2 0 AAA domain AAA PF00004.24 gi|284163635|ref|YP_003401914.1| - 0.071 13.3 0.0 3.7 7.7 0.0 2.4 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|284163635|ref|YP_003401914.1| - 0.18 11.3 1.6 1.5 8.3 0.2 2.8 2 1 0 2 2 2 0 AAA domain DUF3159 PF11361.3 gi|284163636|ref|YP_003401915.1| - 0.1 12.0 7.0 0.17 11.3 4.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3159) MerC PF03203.9 gi|284163636|ref|YP_003401915.1| - 0.24 11.7 3.6 0.49 10.7 2.5 1.5 1 1 0 1 1 1 0 MerC mercury resistance protein DUF4131 PF13567.1 gi|284163636|ref|YP_003401915.1| - 0.61 9.4 2.8 3.2 7.1 1.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) TrkA_C PF02080.16 gi|284163637|ref|YP_003401916.1| - 2.6e-06 26.9 0.1 2.5e-05 23.7 0.0 2.5 3 0 0 3 3 3 1 TrkA-C domain ThiS PF02597.15 gi|284163637|ref|YP_003401916.1| - 0.1 13.0 0.0 8.8 6.8 0.0 2.6 2 0 0 2 2 2 0 ThiS family Peptidase_M29 PF02073.10 gi|284163638|ref|YP_003401917.1| - 8e-21 74.2 0.5 5.1e-19 68.3 0.2 2.1 2 0 0 2 2 2 2 Thermophilic metalloprotease (M29) Tub_2 PF04525.7 gi|284163639|ref|YP_003401918.1| - 5.3e-09 35.7 0.1 5.9e-06 25.8 0.1 2.8 1 1 2 3 3 3 3 Tubby C 2 Big_3_2 PF12245.3 gi|284163639|ref|YP_003401918.1| - 0.0088 15.5 0.3 0.072 12.6 0.0 2.3 1 1 1 2 2 2 1 Bacterial Ig-like domain (group 3) zinc_ribbon_5 PF13719.1 gi|284163640|ref|YP_003401919.1| - 0.016 14.8 0.6 0.042 13.4 0.4 1.8 1 1 0 1 1 1 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|284163640|ref|YP_003401919.1| - 0.093 13.0 1.4 0.18 12.1 0.4 1.9 2 0 0 2 2 2 0 Restriction alleviation protein Lar zinc_ribbon_4 PF13717.1 gi|284163640|ref|YP_003401919.1| - 0.11 12.1 2.2 0.42 10.3 1.6 2.0 1 1 0 1 1 1 0 zinc-ribbon domain zf-DNL PF05180.7 gi|284163640|ref|YP_003401919.1| - 0.34 10.6 2.6 0.85 9.3 1.8 1.6 1 1 0 1 1 1 0 DNL zinc finger PCMT PF01135.14 gi|284163641|ref|YP_003401920.1| - 4.8e-61 205.9 0.0 5.4e-61 205.7 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.2 gi|284163641|ref|YP_003401920.1| - 2.7e-11 44.0 0.0 5.4e-11 43.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|284163641|ref|YP_003401920.1| - 2.2e-08 33.8 0.0 2.9e-08 33.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|284163641|ref|YP_003401920.1| - 5.4e-06 26.4 1.1 7.4e-06 25.9 0.2 1.7 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|284163641|ref|YP_003401920.1| - 0.00019 20.8 0.0 0.00029 20.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.15 gi|284163641|ref|YP_003401920.1| - 0.00041 19.5 0.1 0.00082 18.5 0.0 1.4 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase RrnaAD PF00398.15 gi|284163641|ref|YP_003401920.1| - 0.0059 15.6 0.0 0.0092 15.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase DUF938 PF06080.7 gi|284163641|ref|YP_003401920.1| - 0.015 14.8 0.0 0.024 14.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_12 PF08242.7 gi|284163641|ref|YP_003401920.1| - 0.026 14.9 0.0 0.043 14.2 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_3 PF01596.12 gi|284163641|ref|YP_003401920.1| - 0.046 12.7 0.0 0.077 12.0 0.0 1.4 1 0 0 1 1 1 0 O-methyltransferase EF-1_beta_acid PF10587.4 gi|284163641|ref|YP_003401920.1| - 0.056 13.6 0.6 0.16 12.1 0.4 1.8 1 0 0 1 1 1 0 Eukaryotic elongation factor 1 beta central acidic region Methyltransf_24 PF13578.1 gi|284163641|ref|YP_003401920.1| - 0.077 13.8 0.0 0.19 12.6 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_4 PF02390.12 gi|284163641|ref|YP_003401920.1| - 0.14 11.1 0.0 0.2 10.6 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase GCD14 PF08704.5 gi|284163641|ref|YP_003401920.1| - 0.18 11.2 0.0 0.24 10.8 0.0 1.1 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit PCMT PF01135.14 gi|284163642|ref|YP_003401921.1| - 6.1e-35 120.6 0.0 8.6e-35 120.1 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|284163642|ref|YP_003401921.1| - 2.4e-06 27.0 0.0 4.8e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|284163642|ref|YP_003401921.1| - 7.7e-06 25.5 0.0 1e-05 25.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|284163642|ref|YP_003401921.1| - 2.3e-05 24.9 0.0 4e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|284163642|ref|YP_003401921.1| - 0.00031 21.1 0.0 0.0006 20.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|284163642|ref|YP_003401921.1| - 0.00034 20.6 1.7 0.00071 19.6 1.2 1.7 1 1 0 1 1 1 1 Methyltransferase domain Fibrillarin PF01269.12 gi|284163642|ref|YP_003401921.1| - 0.0022 16.9 0.0 0.0032 16.4 0.0 1.2 1 0 0 1 1 1 1 Fibrillarin Methyltransf_11 PF08241.7 gi|284163642|ref|YP_003401921.1| - 0.025 15.0 0.0 0.048 14.1 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain PrmA PF06325.8 gi|284163642|ref|YP_003401921.1| - 0.087 11.9 0.1 0.14 11.2 0.1 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) RrnaAD PF00398.15 gi|284163642|ref|YP_003401921.1| - 0.11 11.5 0.0 0.16 10.9 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Response_reg PF00072.19 gi|284163643|ref|YP_003401922.1| - 1.5e-23 82.8 0.0 4.5e-23 81.4 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain GAF_2 PF13185.1 gi|284163643|ref|YP_003401922.1| - 7.7e-22 78.3 3.2 7.4e-13 49.2 0.2 2.7 2 0 0 2 2 2 2 GAF domain HTH_10 PF04967.7 gi|284163643|ref|YP_003401922.1| - 1.2e-20 72.8 0.0 6.9e-20 70.3 0.0 2.4 2 0 0 2 2 2 1 HTH DNA binding domain GAF_3 PF13492.1 gi|284163643|ref|YP_003401922.1| - 6.9e-17 61.7 0.2 5.9e-08 32.8 0.0 2.6 2 0 0 2 2 2 2 GAF domain GAF PF01590.21 gi|284163643|ref|YP_003401922.1| - 9.1e-07 29.1 0.3 0.0007 19.7 0.0 2.9 2 1 0 2 2 2 2 GAF domain OKR_DC_1_N PF03709.10 gi|284163643|ref|YP_003401922.1| - 0.00033 20.6 0.2 0.0019 18.2 0.0 2.4 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain PDDEXK_5 PF11645.3 gi|284163644|ref|YP_003401923.1| - 3.3e-08 33.3 0.0 3.6e-08 33.2 0.0 1.1 1 0 0 1 1 1 1 PD-(D/E)XK endonuclease RNA_pol_Rpb5_C PF01191.14 gi|284163645|ref|YP_003401924.1| - 1.6e-26 91.7 0.4 1.7e-26 91.5 0.3 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain DUF3006 PF11213.3 gi|284163645|ref|YP_003401924.1| - 0.018 14.7 0.2 0.15 11.8 0.1 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF3006) RNA_pol_Rpb2_1 PF04563.10 gi|284163646|ref|YP_003401925.1| - 3e-55 186.3 0.0 3.6e-55 186.0 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.9 gi|284163646|ref|YP_003401925.1| - 6.6e-27 94.1 0.1 1e-26 93.5 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.11 gi|284163646|ref|YP_003401925.1| - 1.1e-20 73.0 0.0 2.1e-20 72.2 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_6 PF00562.23 gi|284163647|ref|YP_003401926.1| - 8.7e-122 406.5 0.0 1.1e-121 406.2 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.15 gi|284163647|ref|YP_003401926.1| - 5.6e-29 100.2 0.1 1.5e-28 98.8 0.1 1.8 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.8 gi|284163647|ref|YP_003401926.1| - 4.4e-25 87.2 0.6 9.5e-25 86.1 0.4 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.12 gi|284163647|ref|YP_003401926.1| - 2.6e-12 46.5 4.8 5.4e-12 45.4 3.3 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 OrfB_Zn_ribbon PF07282.6 gi|284163647|ref|YP_003401926.1| - 0.018 14.6 1.2 0.036 13.7 0.9 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DZR PF12773.2 gi|284163647|ref|YP_003401926.1| - 0.027 14.2 0.5 0.048 13.4 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon Auto_anti-p27 PF06677.7 gi|284163647|ref|YP_003401926.1| - 0.054 13.2 0.5 0.1 12.3 0.3 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-ribbon_3 PF13248.1 gi|284163647|ref|YP_003401926.1| - 1 8.6 4.3 5.7 6.2 0.4 2.0 1 1 1 2 2 2 0 zinc-ribbon domain RNA_pol_Rpb1_1 PF04997.7 gi|284163648|ref|YP_003401927.1| - 1.5e-89 300.5 0.0 3.3e-89 299.4 0.0 1.5 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|284163648|ref|YP_003401927.1| - 2.5e-65 219.4 0.1 4.4e-65 218.6 0.1 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_4 PF05000.12 gi|284163648|ref|YP_003401927.1| - 9.9e-32 108.8 0.1 2.6e-31 107.5 0.1 1.8 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.12 gi|284163648|ref|YP_003401927.1| - 1.3e-29 103.3 0.0 2.7e-29 102.2 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_3 PF04983.13 gi|284163648|ref|YP_003401927.1| - 4.6e-27 94.6 0.0 8.1e-27 93.8 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 HTH_3 PF01381.17 gi|284163648|ref|YP_003401927.1| - 0.026 14.3 0.0 0.085 12.7 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix RNA_pol_Rpb1_5 PF04998.12 gi|284163649|ref|YP_003401928.1| - 1.1e-47 162.6 0.2 1.4e-47 162.3 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 DUF4355 PF14265.1 gi|284163649|ref|YP_003401928.1| - 7 6.6 6.1 10 6.1 0.0 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4355) KH_2 PF07650.12 gi|284163650|ref|YP_003401929.1| - 1.5e-12 46.9 0.0 5.9e-06 25.7 0.0 2.1 2 0 0 2 2 2 2 KH domain KH_5 PF13184.1 gi|284163650|ref|YP_003401929.1| - 2.6e-10 39.9 0.1 7.1e-10 38.5 0.0 1.7 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.1 gi|284163650|ref|YP_003401929.1| - 6.2e-08 32.1 0.0 2.6e-06 26.9 0.0 2.2 2 0 0 2 2 2 1 KH domain KH_1 PF00013.24 gi|284163650|ref|YP_003401929.1| - 0.012 15.1 0.0 2.8 7.6 0.0 2.3 2 0 0 2 2 2 0 KH domain Aldedh PF00171.17 gi|284163651|ref|YP_003401930.1| - 8.7e-157 522.1 0.0 9.8e-157 521.9 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family V4R PF02830.13 gi|284163652|ref|YP_003401931.1| - 6.4e-07 29.1 0.1 1.1e-06 28.3 0.1 1.4 1 0 0 1 1 1 1 V4R domain DUF2378 PF09536.5 gi|284163652|ref|YP_003401931.1| - 0.067 12.7 0.0 0.46 9.9 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2378) Ribosom_S12_S23 PF00164.20 gi|284163653|ref|YP_003401932.1| - 7e-41 138.4 0.2 8.1e-41 138.2 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S12/S23 Ribosomal_S7 PF00177.16 gi|284163654|ref|YP_003401933.1| - 2.1e-35 121.4 1.5 2.4e-35 121.2 1.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e CHAT PF12770.2 gi|284163655|ref|YP_003401934.1| - 0.034 13.2 0.0 0.093 11.8 0.0 1.5 1 1 0 1 1 1 0 CHAT domain Response_reg PF00072.19 gi|284163656|ref|YP_003401935.1| - 0.0013 18.7 0.1 0.0027 17.6 0.0 1.6 2 0 0 2 2 2 1 Response regulator receiver domain HalX PF08663.5 gi|284163656|ref|YP_003401935.1| - 0.002 18.0 8.0 0.002 18.0 5.6 1.7 2 0 0 2 2 2 1 HalX domain Methyltransf_24 PF13578.1 gi|284163656|ref|YP_003401935.1| - 0.23 12.3 1.0 0.39 11.5 0.2 1.8 2 0 0 2 2 2 0 Methyltransferase domain CHAT PF12770.2 gi|284163657|ref|YP_003401936.1| - 0.025 13.7 0.0 0.061 12.4 0.0 1.5 1 1 0 1 1 1 0 CHAT domain NYN PF01936.13 gi|284163658|ref|YP_003401937.1| - 0.12 12.6 0.0 0.24 11.6 0.0 1.5 1 0 0 1 1 1 0 NYN domain GTP_EFTU PF00009.22 gi|284163660|ref|YP_003401939.1| - 2.9e-61 206.2 0.2 5.3e-61 205.3 0.2 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|284163660|ref|YP_003401939.1| - 1.9e-25 88.7 0.0 5.2e-25 87.3 0.0 1.8 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_C PF00679.19 gi|284163660|ref|YP_003401939.1| - 6.1e-23 80.4 0.0 2e-21 75.6 0.0 2.8 3 0 0 3 3 3 1 Elongation factor G C-terminus EFG_II PF14492.1 gi|284163660|ref|YP_003401939.1| - 7.6e-22 76.9 0.4 2.4e-21 75.3 0.3 1.9 1 0 0 1 1 1 1 Elongation Factor G, domain II GTP_EFTU_D2 PF03144.20 gi|284163660|ref|YP_003401939.1| - 9.4e-17 60.9 1.8 4.9e-16 58.5 0.6 2.8 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|284163660|ref|YP_003401939.1| - 2.9e-05 24.0 0.1 0.00011 22.1 0.0 2.0 2 0 0 2 2 2 1 50S ribosome-binding GTPase tRNA-synt_2b PF00587.20 gi|284163661|ref|YP_003401940.1| - 9.2e-36 123.0 0.0 1.5e-35 122.3 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.17 gi|284163661|ref|YP_003401940.1| - 6.9e-28 96.8 8.8 1.3e-27 95.9 6.1 1.5 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain Mnd1 PF03962.10 gi|284163661|ref|YP_003401940.1| - 0.045 13.4 7.8 0.078 12.6 5.4 1.3 1 0 0 1 1 1 0 Mnd1 family DUF342 PF03961.8 gi|284163661|ref|YP_003401940.1| - 0.047 12.1 6.1 0.075 11.4 4.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF342) AAA_13 PF13166.1 gi|284163661|ref|YP_003401940.1| - 0.12 10.8 2.9 0.17 10.2 2.0 1.1 1 0 0 1 1 1 0 AAA domain V_ATPase_I PF01496.14 gi|284163661|ref|YP_003401940.1| - 0.27 9.0 4.1 1.2 6.8 2.5 1.9 2 0 0 2 2 2 0 V-type ATPase 116kDa subunit family IncA PF04156.9 gi|284163661|ref|YP_003401940.1| - 0.32 10.5 8.3 0.66 9.5 5.8 1.5 1 0 0 1 1 1 0 IncA protein FlxA PF14282.1 gi|284163661|ref|YP_003401940.1| - 0.8 9.6 5.0 1.3 8.9 3.4 1.3 1 0 0 1 1 1 0 FlxA-like protein TBPIP PF07106.8 gi|284163661|ref|YP_003401940.1| - 0.88 9.0 5.6 1.5 8.3 3.9 1.3 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Atg14 PF10186.4 gi|284163661|ref|YP_003401940.1| - 1.5 7.6 4.2 2.3 7.1 2.9 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 APG6 PF04111.7 gi|284163661|ref|YP_003401940.1| - 1.6 7.6 6.8 4 6.3 4.7 1.6 2 0 0 2 2 2 0 Autophagy protein Apg6 bZIP_1 PF00170.16 gi|284163661|ref|YP_003401940.1| - 1.9 8.5 7.0 19 5.3 0.1 2.4 1 1 1 2 2 2 0 bZIP transcription factor CENP-H PF05837.7 gi|284163661|ref|YP_003401940.1| - 2.5 8.3 7.5 5.2 7.2 5.2 1.5 1 0 0 1 1 1 0 Centromere protein H (CENP-H) Syntaxin-6_N PF09177.6 gi|284163661|ref|YP_003401940.1| - 3 8.2 7.1 20 5.6 4.3 2.6 2 1 0 2 2 2 0 Syntaxin 6, N-terminal V-SNARE PF05008.10 gi|284163661|ref|YP_003401940.1| - 5.3 7.2 10.0 11 6.2 0.0 3.0 2 1 0 2 2 2 0 Vesicle transport v-SNARE protein N-terminus YtxH PF12732.2 gi|284163661|ref|YP_003401940.1| - 5.3 7.4 6.4 64 4.0 4.5 2.5 1 1 0 1 1 1 0 YtxH-like protein DUF4200 PF13863.1 gi|284163661|ref|YP_003401940.1| - 6.5 6.7 16.7 1.5 8.7 8.8 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) TrkA_C PF02080.16 gi|284163662|ref|YP_003401941.1| - 1e-21 76.2 1.5 7.5e-14 51.0 0.1 2.5 2 0 0 2 2 2 2 TrkA-C domain PhoU PF01895.14 gi|284163662|ref|YP_003401941.1| - 8.8e-15 54.9 9.9 5.6e-07 29.9 2.7 2.4 2 0 0 2 2 2 2 PhoU domain DUF3285 PF11688.3 gi|284163663|ref|YP_003401942.1| - 0.025 14.1 0.1 0.031 13.8 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3285) HIG_1_N PF04588.8 gi|284163663|ref|YP_003401942.1| - 0.15 11.7 1.0 0.23 11.2 0.7 1.3 1 0 0 1 1 1 0 Hypoxia induced protein conserved region adh_short PF00106.20 gi|284163664|ref|YP_003401943.1| - 2.4e-29 102.3 1.5 4.8e-29 101.4 1.0 1.5 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|284163664|ref|YP_003401943.1| - 6.2e-13 49.0 0.0 8.2e-13 48.6 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|284163664|ref|YP_003401943.1| - 1.9e-10 40.7 0.6 4e-10 39.6 0.4 1.5 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|284163664|ref|YP_003401943.1| - 4.2e-05 23.6 4.4 0.00036 20.5 1.6 2.3 2 0 0 2 2 2 1 NADH(P)-binding DUF4235 PF14019.1 gi|284163664|ref|YP_003401943.1| - 0.01 15.6 0.6 2.3 8.1 0.6 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF4235) Polysacc_synt_2 PF02719.10 gi|284163664|ref|YP_003401943.1| - 0.039 12.8 0.0 0.053 12.4 0.0 1.2 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein Dak1_2 PF13684.1 gi|284163664|ref|YP_003401943.1| - 0.043 12.7 0.1 4.9 6.0 0.0 2.2 1 1 1 2 2 2 0 Dihydroxyacetone kinase family Saccharop_dh PF03435.13 gi|284163664|ref|YP_003401943.1| - 0.091 11.7 0.8 0.15 11.0 0.5 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase AAA_19 PF13245.1 gi|284163664|ref|YP_003401943.1| - 0.12 12.1 2.4 0.43 10.3 0.4 2.6 2 0 0 2 2 2 0 Part of AAA domain Epimerase PF01370.16 gi|284163664|ref|YP_003401943.1| - 0.14 11.5 0.5 0.39 10.1 0.0 2.0 3 0 0 3 3 3 0 NAD dependent epimerase/dehydratase family DUF4112 PF13430.1 gi|284163665|ref|YP_003401944.1| - 0.2 11.6 2.2 0.29 11.0 1.5 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4112) BNIP3 PF06553.7 gi|284163665|ref|YP_003401944.1| - 0.23 10.8 0.4 0.4 10.0 0.3 1.4 1 0 0 1 1 1 0 BNIP3 Yip1 PF04893.12 gi|284163665|ref|YP_003401944.1| - 6.7 6.1 18.5 8.9 5.7 12.8 1.2 1 0 0 1 1 1 0 Yip1 domain MitoNEET_N PF10660.4 gi|284163665|ref|YP_003401944.1| - 7.6 6.4 6.1 0.77 9.6 0.7 2.0 2 1 0 2 2 2 0 Iron-containing outer mitochondrial membrane protein N-terminus CRCB PF02537.10 gi|284163666|ref|YP_003401945.1| - 3.3e-24 85.0 8.3 3.8e-24 84.8 5.7 1.0 1 0 0 1 1 1 1 CrcB-like protein MFS_1 PF07690.11 gi|284163666|ref|YP_003401945.1| - 0.0062 15.2 6.7 0.0076 15.0 4.7 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily CRCB PF02537.10 gi|284163667|ref|YP_003401946.1| - 3.4e-14 52.7 11.8 4e-14 52.4 8.2 1.1 1 0 0 1 1 1 1 CrcB-like protein Cation_efflux PF01545.16 gi|284163668|ref|YP_003401947.1| - 2.4e-58 197.4 1.7 2.9e-58 197.2 1.2 1.0 1 0 0 1 1 1 1 Cation efflux family Na_H_antiport_2 PF13726.1 gi|284163668|ref|YP_003401947.1| - 0.0083 16.0 0.8 0.028 14.3 0.5 2.0 1 0 0 1 1 1 1 Na+-H+ antiporter family BON PF04972.12 gi|284163668|ref|YP_003401947.1| - 0.0097 15.6 0.0 0.037 13.7 0.0 2.0 1 0 0 1 1 1 1 BON domain ASL_C2 PF14698.1 gi|284163668|ref|YP_003401947.1| - 0.042 13.9 0.0 0.13 12.3 0.0 1.8 1 0 0 1 1 1 0 Argininosuccinate lyase C-terminal HATPase_c PF02518.21 gi|284163669|ref|YP_003401948.1| - 2.2e-18 66.0 0.0 6.1e-18 64.5 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|284163669|ref|YP_003401948.1| - 1.5e-07 31.0 0.0 2.6e-07 30.2 0.0 1.3 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.1 gi|284163669|ref|YP_003401948.1| - 5.9e-07 29.3 0.0 2e-06 27.6 0.0 1.8 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA PF00512.20 gi|284163669|ref|YP_003401948.1| - 0.0071 16.3 1.9 0.012 15.5 0.9 1.7 1 1 0 1 1 1 1 His Kinase A (phospho-acceptor) domain DUF1098 PF06497.6 gi|284163669|ref|YP_003401948.1| - 0.1 12.6 0.1 0.18 11.8 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1098) Hemerythrin PF01814.18 gi|284163669|ref|YP_003401948.1| - 0.33 11.0 3.9 0.64 10.1 2.7 1.4 1 0 0 1 1 1 0 Hemerythrin HHE cation binding domain DUF4536 PF15055.1 gi|284163669|ref|YP_003401948.1| - 7.6 6.6 7.8 0.35 10.9 0.3 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF4536) Lactamase_B PF00753.22 gi|284163670|ref|YP_003401949.1| - 9.2e-24 84.1 7.7 1.4e-23 83.5 5.3 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|284163670|ref|YP_003401949.1| - 0.00012 21.6 0.1 0.00021 20.9 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain AMP-binding PF00501.23 gi|284163671|ref|YP_003401950.1| - 9.6e-93 310.8 0.0 1.1e-92 310.5 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme Na_H_Exchanger PF00999.16 gi|284163672|ref|YP_003401951.1| - 1.2e-34 119.4 43.6 1.4e-34 119.2 30.2 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.13 gi|284163672|ref|YP_003401951.1| - 2.4e-32 111.3 2.6 5.1e-32 110.2 1.2 2.1 2 0 0 2 2 1 1 TrkA-N domain TrkA_C PF02080.16 gi|284163672|ref|YP_003401951.1| - 1.9e-11 43.4 2.6 3.8e-11 42.4 0.7 2.2 2 0 0 2 2 2 1 TrkA-C domain NAD_binding_7 PF13241.1 gi|284163672|ref|YP_003401951.1| - 2.2e-08 34.2 0.2 5.7e-08 32.9 0.1 1.7 1 0 0 1 1 1 1 Putative NAD(P)-binding F420_oxidored PF03807.12 gi|284163672|ref|YP_003401951.1| - 7.3e-06 26.3 2.9 0.00093 19.5 0.4 2.9 1 1 1 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Saccharop_dh PF03435.13 gi|284163672|ref|YP_003401951.1| - 1.7e-05 24.0 0.3 2.9e-05 23.2 0.2 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_10 PF13460.1 gi|284163672|ref|YP_003401951.1| - 6.6e-05 22.9 2.0 0.0002 21.4 1.3 1.8 1 1 0 1 1 1 1 NADH(P)-binding FAD_binding_3 PF01494.14 gi|284163672|ref|YP_003401951.1| - 0.00018 20.7 0.1 0.00025 20.2 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|284163672|ref|YP_003401951.1| - 0.00078 18.4 0.3 0.0013 17.7 0.2 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase ApbA PF02558.11 gi|284163672|ref|YP_003401951.1| - 0.0013 18.1 2.1 0.0048 16.3 0.0 3.0 4 0 0 4 4 4 1 Ketopantoate reductase PanE/ApbA Rossmann-like PF10727.4 gi|284163672|ref|YP_003401951.1| - 0.008 15.8 0.4 0.023 14.4 0.3 1.7 1 0 0 1 1 1 1 Rossmann-like domain Pyr_redox PF00070.22 gi|284163672|ref|YP_003401951.1| - 0.011 16.0 0.3 0.041 14.3 0.2 2.0 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.15 gi|284163672|ref|YP_003401951.1| - 0.015 15.4 0.2 0.029 14.4 0.1 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|284163672|ref|YP_003401951.1| - 0.02 14.2 0.0 0.035 13.4 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|284163672|ref|YP_003401951.1| - 0.027 13.6 1.6 0.033 13.3 0.1 1.9 3 0 0 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|284163672|ref|YP_003401951.1| - 0.035 13.8 0.1 0.096 12.4 0.0 1.8 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AdoHcyase_NAD PF00670.16 gi|284163672|ref|YP_003401951.1| - 0.049 13.4 0.1 0.098 12.4 0.0 1.5 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 3HCDH_N PF02737.13 gi|284163672|ref|YP_003401951.1| - 0.05 13.2 0.2 0.16 11.5 0.1 1.7 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|284163672|ref|YP_003401951.1| - 0.054 13.0 0.2 0.11 12.0 0.1 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_2 PF07992.9 gi|284163672|ref|YP_003401951.1| - 0.1 12.4 1.4 0.23 11.3 0.2 2.1 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase MgtE PF01769.11 gi|284163673|ref|YP_003401952.1| - 4.9e-23 81.8 8.5 4.9e-23 81.8 5.9 1.5 2 0 0 2 2 2 1 Divalent cation transporter Yip1 PF04893.12 gi|284163673|ref|YP_003401952.1| - 8.5 5.8 22.3 45 3.4 15.4 1.9 1 1 0 1 1 1 0 Yip1 domain MgtE PF01769.11 gi|284163674|ref|YP_003401953.1| - 4.7e-18 65.7 3.0 5.2e-18 65.6 1.1 1.6 2 0 0 2 2 2 1 Divalent cation transporter Transmemb_17 PF09799.4 gi|284163674|ref|YP_003401953.1| - 0.0026 18.0 2.9 0.0061 16.8 2.0 1.6 1 0 0 1 1 1 1 Predicted membrane protein Yip1 PF04893.12 gi|284163674|ref|YP_003401953.1| - 0.0059 16.1 16.4 0.019 14.4 11.4 1.7 1 1 0 1 1 1 1 Yip1 domain DUF4257 PF14074.1 gi|284163674|ref|YP_003401953.1| - 0.051 13.2 1.8 1.3 8.6 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF4257) Cation_efflux PF01545.16 gi|284163674|ref|YP_003401953.1| - 6 5.8 10.2 81 2.1 7.0 2.0 1 1 0 1 1 1 0 Cation efflux family DUF2270 PF10028.4 gi|284163675|ref|YP_003401954.1| - 2.4e-64 216.2 6.6 2.9e-64 215.9 4.5 1.0 1 0 0 1 1 1 1 Predicted integral membrane protein (DUF2270) O-antigen_lig PF13425.1 gi|284163675|ref|YP_003401954.1| - 0.03 14.3 0.3 8.3 6.3 0.0 2.2 2 0 0 2 2 2 0 O-antigen ligase like membrane protein 7TM_GPCR_Str PF10326.4 gi|284163675|ref|YP_003401954.1| - 0.09 11.8 0.7 0.11 11.5 0.0 1.4 2 0 0 2 2 2 0 Serpentine type 7TM GPCR chemoreceptor Str DUF4131 PF13567.1 gi|284163675|ref|YP_003401954.1| - 0.61 9.4 4.6 2.6 7.4 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) DUF485 PF04341.7 gi|284163675|ref|YP_003401954.1| - 8.8 6.1 8.5 0.97 9.1 1.2 2.5 2 1 0 2 2 2 0 Protein of unknown function, DUF485 DUF4177 PF13783.1 gi|284163676|ref|YP_003401955.1| - 1.1e-13 50.5 0.2 1.3e-13 50.3 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4177) DUF898 PF05987.8 gi|284163677|ref|YP_003401956.1| - 0.99 8.2 7.6 4.3 6.1 2.8 2.1 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF898) Imm2 PF14426.1 gi|284163678|ref|YP_003401957.1| - 0.00064 19.6 0.2 0.0011 18.9 0.1 1.4 1 0 0 1 1 1 1 Immunity protein Imm2 Ferritin_2 PF13668.1 gi|284163679|ref|YP_003401958.1| - 6.9e-40 136.1 0.1 1.1e-39 135.5 0.0 1.3 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.12 gi|284163679|ref|YP_003401958.1| - 0.097 12.9 0.1 27 5.0 0.0 2.7 2 1 1 3 3 3 0 Rubrerythrin DUF2391 PF09622.5 gi|284163680|ref|YP_003401959.1| - 0.00014 21.0 0.8 0.00018 20.7 0.5 1.2 1 0 0 1 1 1 1 Putative integral membrane protein (DUF2391) AFOR_C PF01314.13 gi|284163681|ref|YP_003401960.1| - 2.5e-75 253.5 0.6 1.2e-74 251.3 0.4 1.9 1 1 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|284163681|ref|YP_003401960.1| - 1.7e-55 187.4 0.0 2.6e-55 186.8 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain PLDc_N PF13396.1 gi|284163682|ref|YP_003401961.1| - 0.0086 15.7 0.1 0.019 14.6 0.1 1.5 1 0 0 1 1 1 1 Phospholipase_D-nuclease N-terminal Thiolase_N PF00108.18 gi|284163683|ref|YP_003401962.1| - 4.5e-78 261.8 1.0 9.5e-78 260.8 0.7 1.5 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|284163683|ref|YP_003401962.1| - 6.9e-43 144.9 0.1 1.5e-42 143.8 0.0 1.6 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|284163683|ref|YP_003401962.1| - 0.00014 21.4 1.3 0.00024 20.6 0.6 1.5 1 1 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain PDT PF00800.13 gi|284163683|ref|YP_003401962.1| - 0.038 13.5 0.1 8.7 5.8 0.0 2.2 2 0 0 2 2 2 0 Prephenate dehydratase HTH_7 PF02796.10 gi|284163683|ref|YP_003401962.1| - 0.072 12.9 0.0 0.27 11.1 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase Polysacc_lyase PF14099.1 gi|284163685|ref|YP_003401964.1| - 0.005 16.5 1.2 0.046 13.3 0.8 2.0 1 1 0 1 1 1 1 Polysaccharide lyase TAT_signal PF10518.4 gi|284163685|ref|YP_003401964.1| - 0.014 15.3 5.1 0.032 14.2 3.5 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence ATPgrasp_Ter PF15632.1 gi|284163686|ref|YP_003401965.1| - 0.0021 16.8 0.0 0.0029 16.4 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon YbjN PF10722.4 gi|284163686|ref|YP_003401965.1| - 0.19 11.7 1.8 0.5 10.4 1.2 1.8 1 1 0 1 1 1 0 Putative bacterial sensory transduction regulator BPL_LplA_LipB PF03099.14 gi|284163687|ref|YP_003401966.1| - 0.0033 17.4 0.0 0.0067 16.4 0.0 1.5 1 1 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Peptidase_M23 PF01551.17 gi|284163688|ref|YP_003401967.1| - 0.002 18.1 0.0 0.0047 16.9 0.0 1.6 1 0 0 1 1 1 1 Peptidase family M23 Neuralized PF07177.7 gi|284163688|ref|YP_003401967.1| - 0.12 12.2 0.1 0.44 10.4 0.0 1.9 2 0 0 2 2 2 0 Neuralized RnfC_N PF13375.1 gi|284163688|ref|YP_003401967.1| - 0.14 11.9 0.0 7.9 6.2 0.0 2.3 2 0 0 2 2 2 0 RnfC Barrel sandwich hybrid domain Serpin PF00079.15 gi|284163689|ref|YP_003401968.1| - 8.4e-108 360.8 0.0 9.7e-108 360.6 0.0 1.0 1 0 0 1 1 1 1 Serpin (serine protease inhibitor) DUF4385 PF14328.1 gi|284163690|ref|YP_003401969.1| - 1.3e-56 190.5 8.0 1.6e-56 190.2 5.6 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4385) DUF2855 PF11017.3 gi|284163690|ref|YP_003401969.1| - 2.2 7.3 5.2 0.29 10.2 0.2 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2855) 4HBT PF03061.17 gi|284163691|ref|YP_003401970.1| - 3.2e-13 49.6 0.1 5.8e-13 48.7 0.0 1.5 2 0 0 2 2 2 1 Thioesterase superfamily DUF4442 PF14539.1 gi|284163691|ref|YP_003401970.1| - 3e-07 30.4 0.0 4.6e-07 29.8 0.0 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.1 gi|284163691|ref|YP_003401970.1| - 0.012 15.3 0.1 0.015 15.0 0.1 1.1 1 0 0 1 1 1 0 Thioesterase-like superfamily DUF221 PF02714.10 gi|284163692|ref|YP_003401971.1| - 0.064 12.1 1.8 0.069 12.0 1.2 1.0 1 0 0 1 1 1 0 Domain of unknown function DUF221 Ost4 PF10215.4 gi|284163692|ref|YP_003401971.1| - 0.55 9.7 4.7 0.1 12.0 1.0 1.5 2 0 0 2 2 2 0 Oligosaccaryltransferase Isochorismatase PF00857.15 gi|284163693|ref|YP_003401972.1| - 1.8e-50 171.3 0.1 2e-50 171.1 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family Peptidase_MA_2 PF13485.1 gi|284163694|ref|YP_003401973.1| - 1.2e-05 25.3 0.5 3e-05 24.0 0.0 1.9 2 0 0 2 2 2 1 Peptidase MA superfamily PDGLE PF13190.1 gi|284163694|ref|YP_003401973.1| - 0.087 12.5 2.2 9.4 5.9 0.2 2.8 2 0 0 2 2 2 0 PDGLE domain Peptidase_M76 PF09768.4 gi|284163694|ref|YP_003401973.1| - 0.091 12.2 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 Peptidase M76 family Peptidase_MA_2 PF13485.1 gi|284163695|ref|YP_003401974.1| - 5.5e-07 29.6 0.4 1.8e-06 27.9 0.0 2.1 2 1 0 2 2 2 1 Peptidase MA superfamily Peptidase_M76 PF09768.4 gi|284163695|ref|YP_003401974.1| - 0.0044 16.4 0.0 0.0087 15.5 0.0 1.4 1 0 0 1 1 1 1 Peptidase M76 family DUF4157 PF13699.1 gi|284163695|ref|YP_003401974.1| - 0.093 12.8 0.0 0.35 11.0 0.0 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4157) QRPTase_C PF01729.14 gi|284163696|ref|YP_003401975.1| - 1.8e-16 60.1 0.0 2.7e-16 59.5 0.0 1.3 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|284163696|ref|YP_003401975.1| - 0.00068 19.4 0.0 0.0022 17.7 0.0 1.8 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain Peptidase_M48 PF01435.13 gi|284163697|ref|YP_003401976.1| - 1.6e-24 86.7 0.3 2.8e-24 85.9 0.2 1.4 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|284163697|ref|YP_003401976.1| - 0.0025 16.8 0.0 0.0025 16.8 0.0 1.9 2 0 0 2 2 2 1 BlaR1 peptidase M56 SprT-like PF10263.4 gi|284163697|ref|YP_003401976.1| - 0.0037 16.9 0.0 0.01 15.5 0.0 1.6 1 1 1 2 2 2 1 SprT-like family Peptidase_MA_2 PF13485.1 gi|284163697|ref|YP_003401976.1| - 0.035 14.1 0.0 0.082 12.9 0.0 1.6 1 0 0 1 1 1 0 Peptidase MA superfamily DUF4157 PF13699.1 gi|284163697|ref|YP_003401976.1| - 0.24 11.5 3.2 0.28 11.3 0.2 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4157) PepSY_TM_3 PF13706.1 gi|284163697|ref|YP_003401976.1| - 7.3 6.1 11.2 0.91 8.9 1.5 2.7 2 0 0 2 2 2 0 PepSY-associated TM helix ABC2_membrane_2 PF12679.2 gi|284163698|ref|YP_003401977.1| - 2.6e-41 141.3 13.4 3.1e-41 141.0 9.3 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|284163698|ref|YP_003401977.1| - 3.1e-21 75.5 11.5 3.1e-21 75.5 8.0 1.7 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|284163698|ref|YP_003401977.1| - 1.4e-05 24.2 21.7 1.4e-05 24.2 15.0 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|284163698|ref|YP_003401977.1| - 0.00094 18.3 18.2 0.00094 18.3 12.6 1.7 2 1 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_5 PF13346.1 gi|284163698|ref|YP_003401977.1| - 0.15 11.3 12.4 0.77 9.0 8.6 2.1 1 1 0 1 1 1 0 ABC-2 family transporter protein EBP PF05241.7 gi|284163698|ref|YP_003401977.1| - 1.3 7.9 10.2 0.49 9.3 0.2 3.2 3 0 0 3 3 3 0 Emopamil binding protein ABC_tran PF00005.22 gi|284163699|ref|YP_003401978.1| - 9.4e-24 84.2 0.0 1.4e-23 83.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284163699|ref|YP_003401978.1| - 9.5e-14 52.0 0.0 5.4e-09 36.4 0.0 2.2 1 1 1 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|284163699|ref|YP_003401978.1| - 1.6e-06 28.5 0.0 2.9e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_29 PF13555.1 gi|284163699|ref|YP_003401978.1| - 0.0035 16.8 0.1 0.0077 15.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|284163699|ref|YP_003401978.1| - 0.0048 17.2 0.1 0.0076 16.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|284163699|ref|YP_003401978.1| - 0.0091 15.9 0.0 0.02 14.9 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|284163699|ref|YP_003401978.1| - 0.07 12.3 0.0 9.7 5.3 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain HHH_5 PF14520.1 gi|284163699|ref|YP_003401978.1| - 0.35 11.0 2.1 1.4 9.1 0.1 2.9 3 1 0 3 3 3 0 Helix-hairpin-helix domain Sensor PF13796.1 gi|284163700|ref|YP_003401979.1| - 8e-33 113.5 22.6 3.1e-32 111.6 15.7 1.8 1 1 0 1 1 1 1 Putative sensor Neurensin PF14927.1 gi|284163700|ref|YP_003401979.1| - 3.4 7.0 5.9 0.79 9.1 1.2 2.0 2 1 0 2 2 2 0 Neurensin HTH_20 PF12840.2 gi|284163701|ref|YP_003401980.1| - 2.2e-05 24.1 0.3 3.1e-05 23.6 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|284163701|ref|YP_003401980.1| - 9.4e-05 22.0 0.0 0.00014 21.4 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|284163701|ref|YP_003401980.1| - 0.00043 20.5 0.1 0.0006 20.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|284163701|ref|YP_003401980.1| - 0.0012 18.2 0.0 0.0018 17.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|284163701|ref|YP_003401980.1| - 0.0017 17.9 0.0 0.0032 17.0 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|284163701|ref|YP_003401980.1| - 0.0041 16.8 0.0 0.0068 16.0 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.9 gi|284163701|ref|YP_003401980.1| - 0.0048 16.6 0.0 0.007 16.1 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_AsnC-type PF13404.1 gi|284163701|ref|YP_003401980.1| - 0.0052 16.2 0.0 0.0097 15.4 0.0 1.6 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_28 PF13518.1 gi|284163701|ref|YP_003401980.1| - 0.0099 15.8 0.0 0.015 15.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|284163701|ref|YP_003401980.1| - 0.013 15.1 0.0 0.02 14.5 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_29 PF13551.1 gi|284163701|ref|YP_003401980.1| - 0.035 14.2 0.0 0.047 13.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_11 PF08279.7 gi|284163701|ref|YP_003401980.1| - 0.038 13.6 0.0 0.057 13.0 0.0 1.5 1 1 0 1 1 1 0 HTH domain HTH_23 PF13384.1 gi|284163701|ref|YP_003401980.1| - 0.039 13.5 0.1 0.06 13.0 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain TM_helix PF05552.7 gi|284163702|ref|YP_003401981.1| - 0.22 11.2 0.1 0.22 11.2 0.1 1.7 2 0 0 2 2 2 0 Conserved TM helix EmrE PF13536.1 gi|284163702|ref|YP_003401981.1| - 2.1 8.6 9.3 3.7 7.7 6.3 1.5 1 1 0 1 1 1 0 Multidrug resistance efflux transporter DUF4229 PF14012.1 gi|284163702|ref|YP_003401981.1| - 4.5 7.2 13.3 6.6 6.7 0.9 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF4229) 5TM-5TMR_LYT PF07694.7 gi|284163703|ref|YP_003401982.1| - 0.0054 16.0 1.0 0.0064 15.8 0.7 1.2 1 1 0 1 1 1 1 5TMR of 5TMR-LYT DUF3816 PF12822.2 gi|284163703|ref|YP_003401982.1| - 0.0071 16.2 0.8 0.0079 16.0 0.5 1.2 1 1 0 1 1 1 1 Protein of unknown function (DUF3816) YesK PF14150.1 gi|284163703|ref|YP_003401982.1| - 0.011 15.7 0.3 0.017 15.1 0.2 1.5 1 1 0 1 1 1 0 YesK-like protein DUF1158 PF06643.6 gi|284163703|ref|YP_003401982.1| - 0.049 13.9 0.2 0.096 13.0 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1158) PetG PF02529.10 gi|284163703|ref|YP_003401982.1| - 0.057 12.9 2.2 0.12 11.9 0.1 2.4 3 0 0 3 3 3 0 Cytochrome B6-F complex subunit 5 DUF998 PF06197.8 gi|284163703|ref|YP_003401982.1| - 0.073 12.3 5.8 0.085 12.1 4.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF998) DUF373 PF04123.8 gi|284163703|ref|YP_003401982.1| - 0.089 11.7 1.3 0.14 11.1 1.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF373) CbiM PF01891.11 gi|284163703|ref|YP_003401982.1| - 0.11 12.1 2.4 0.13 11.8 1.7 1.1 1 0 0 1 1 1 0 Cobalt uptake substrate-specific transmembrane region XK-related PF09815.4 gi|284163703|ref|YP_003401982.1| - 0.12 11.3 0.5 0.13 11.2 0.4 1.0 1 0 0 1 1 1 0 XK-related protein Oxidored_q2 PF00420.19 gi|284163703|ref|YP_003401982.1| - 0.12 11.9 2.7 0.68 9.5 0.1 2.1 1 1 1 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Yip1 PF04893.12 gi|284163703|ref|YP_003401982.1| - 0.42 10.1 3.6 0.53 9.7 2.5 1.3 1 0 0 1 1 1 0 Yip1 domain Polysacc_synt_C PF14667.1 gi|284163703|ref|YP_003401982.1| - 0.42 10.3 4.2 0.53 10.0 2.9 1.1 1 0 0 1 1 1 0 Polysaccharide biosynthesis C-terminal domain Tox-WTIP PF15654.1 gi|284163703|ref|YP_003401982.1| - 1.4 8.5 5.3 0.95 9.1 1.4 2.2 2 1 1 3 3 3 0 Toxin with a conserved tryptophan and TIP tripeptide motif DUF4231 PF14015.1 gi|284163703|ref|YP_003401982.1| - 4.2 7.4 6.0 10 6.1 0.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF4231) AMMECR1 PF01871.12 gi|284163704|ref|YP_003401983.1| - 2.9e-49 166.4 0.0 3.4e-49 166.2 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 CARDB PF07705.6 gi|284163706|ref|YP_003401985.1| - 0.0084 16.1 0.0 0.011 15.7 0.0 1.2 1 0 0 1 1 1 1 CARDB Fil_haemagg PF05594.9 gi|284163706|ref|YP_003401985.1| - 0.35 11.2 4.8 0.28 11.5 1.3 2.0 2 0 0 2 2 2 0 Haemagluttinin repeat HTH_20 PF12840.2 gi|284163707|ref|YP_003401986.1| - 2.1e-07 30.6 0.3 9.3e-07 28.5 0.1 2.2 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|284163707|ref|YP_003401986.1| - 7.1e-06 25.3 0.2 1.6e-05 24.2 0.1 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding GntR PF00392.16 gi|284163707|ref|YP_003401986.1| - 2.3e-05 23.7 0.1 5.2e-05 22.5 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_11 PF08279.7 gi|284163707|ref|YP_003401986.1| - 6.9e-05 22.4 0.6 6.9e-05 22.4 0.4 1.6 2 0 0 2 2 2 1 HTH domain HTH_DeoR PF08220.7 gi|284163707|ref|YP_003401986.1| - 0.0003 20.2 1.6 0.00065 19.1 1.1 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain MarR PF01047.17 gi|284163707|ref|YP_003401986.1| - 0.00032 20.3 0.0 0.00059 19.5 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|284163707|ref|YP_003401986.1| - 0.00035 20.1 0.1 0.00084 18.9 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.1 gi|284163707|ref|YP_003401986.1| - 0.011 15.5 0.0 0.016 15.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_23 PF13384.1 gi|284163707|ref|YP_003401986.1| - 0.015 14.9 0.0 0.041 13.5 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_41 PF14502.1 gi|284163707|ref|YP_003401986.1| - 0.035 13.7 0.0 0.063 12.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.5 gi|284163707|ref|YP_003401986.1| - 0.035 13.6 0.0 0.074 12.6 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|284163707|ref|YP_003401986.1| - 0.04 13.6 0.0 0.083 12.6 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_5 PF01022.15 gi|284163707|ref|YP_003401986.1| - 0.064 12.9 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_34 PF13601.1 gi|284163707|ref|YP_003401986.1| - 0.068 13.2 0.0 0.14 12.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|284163707|ref|YP_003401986.1| - 0.1 12.9 0.1 0.23 11.7 0.1 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain TrmB PF01978.14 gi|284163707|ref|YP_003401986.1| - 0.11 12.2 0.0 0.3 10.8 0.0 1.9 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB tRNA_anti-codon PF01336.20 gi|284163709|ref|YP_003401988.1| - 3.8e-33 113.1 5.0 2e-13 49.9 0.1 3.6 3 0 0 3 3 3 3 OB-fold nucleic acid binding domain Rep_fac-A_C PF08646.5 gi|284163709|ref|YP_003401988.1| - 0.00063 19.4 0.0 3.3 7.4 0.0 3.2 3 0 0 3 3 3 2 Replication factor-A C terminal domain tRNA_anti-like PF12869.2 gi|284163709|ref|YP_003401988.1| - 0.0013 18.1 0.0 0.05 13.0 0.0 2.9 2 1 0 2 2 2 1 tRNA_anti-like SSB PF00436.20 gi|284163709|ref|YP_003401988.1| - 0.0014 18.4 0.0 1.9 8.4 0.0 3.2 3 0 0 3 3 3 2 Single-strand binding protein family Lipocalin_6 PF13944.1 gi|284163709|ref|YP_003401988.1| - 0.022 14.8 0.0 0.081 13.0 0.0 1.9 1 0 0 1 1 1 0 Lipocalin-like domain DUF4539 PF15072.1 gi|284163709|ref|YP_003401988.1| - 0.044 13.4 0.1 1.6 8.4 0.0 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4539) tRNA_anti_2 PF13742.1 gi|284163709|ref|YP_003401988.1| - 0.047 13.5 0.0 1.3 8.8 0.0 2.8 3 0 0 3 3 3 0 OB-fold nucleic acid binding domain CBFD_NFYB_HMF PF00808.18 gi|284163710|ref|YP_003401989.1| - 5.1e-27 93.7 0.2 9.3e-14 51.2 0.0 2.0 2 0 0 2 2 2 2 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|284163710|ref|YP_003401989.1| - 3.8e-18 65.3 0.1 2e-11 43.8 0.0 2.0 2 0 0 2 2 2 2 Core histone H2A/H2B/H3/H4 CENP-S PF15630.1 gi|284163710|ref|YP_003401989.1| - 9.3e-05 22.5 0.9 0.00023 21.2 0.1 1.9 2 0 0 2 2 2 1 Kinetochore component CENP-S TAF PF02969.12 gi|284163710|ref|YP_003401989.1| - 0.016 15.1 2.5 0.26 11.2 0.2 2.3 2 0 0 2 2 2 0 TATA box binding protein associated factor (TAF) TFIID_20kDa PF03847.8 gi|284163710|ref|YP_003401989.1| - 0.031 14.5 1.8 0.037 14.3 0.2 1.8 2 1 0 2 2 2 0 Transcription initiation factor TFIID subunit A TFIID-18kDa PF02269.11 gi|284163710|ref|YP_003401989.1| - 0.052 13.3 0.2 1.2 8.9 0.0 2.1 2 0 0 2 2 2 0 Transcription initiation factor IID, 18kD subunit Hist_deacetyl PF00850.14 gi|284163711|ref|YP_003401990.1| - 7.3e-87 291.5 0.0 8.9e-87 291.2 0.0 1.0 1 0 0 1 1 1 1 Histone deacetylase domain tRNA_NucTransf2 PF09249.6 gi|284163712|ref|YP_003401991.1| - 8.3e-41 138.4 0.0 1.3e-40 137.7 0.0 1.3 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|284163712|ref|YP_003401991.1| - 5e-12 45.9 0.0 1.2e-11 44.7 0.0 1.6 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF2647 PF10839.3 gi|284163712|ref|YP_003401991.1| - 0.15 12.1 0.0 14 5.8 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2647) PDDEXK_5 PF11645.3 gi|284163713|ref|YP_003401992.1| - 0.0011 18.6 0.1 0.0013 18.4 0.0 1.1 1 0 0 1 1 1 1 PD-(D/E)XK endonuclease NikR_C PF08753.6 gi|284163714|ref|YP_003401993.1| - 6.4e-07 29.1 0.0 0.00018 21.3 0.0 2.2 2 0 0 2 2 2 2 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|284163714|ref|YP_003401993.1| - 0.00017 21.2 0.2 0.0004 20.1 0.0 1.7 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family cobW PF02492.14 gi|284163715|ref|YP_003401994.1| - 9.5e-48 161.9 0.0 1.2e-47 161.6 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.9 gi|284163715|ref|YP_003401994.1| - 2.3e-25 88.1 0.0 8.1e-25 86.3 0.0 1.9 1 1 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain AAA_19 PF13245.1 gi|284163715|ref|YP_003401994.1| - 0.016 14.9 0.2 0.034 13.8 0.2 1.5 1 0 0 1 1 1 0 Part of AAA domain AAA_10 PF12846.2 gi|284163715|ref|YP_003401994.1| - 0.016 14.6 0.1 0.033 13.6 0.1 1.8 1 1 0 1 1 1 0 AAA-like domain AAA_22 PF13401.1 gi|284163715|ref|YP_003401994.1| - 0.038 14.1 0.0 0.084 13.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|284163715|ref|YP_003401994.1| - 0.065 13.2 0.1 0.18 11.7 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_29 PF13555.1 gi|284163715|ref|YP_003401994.1| - 0.07 12.6 0.0 0.19 11.3 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain UPF0079 PF02367.12 gi|284163715|ref|YP_003401994.1| - 0.074 12.6 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 T2SE PF00437.15 gi|284163715|ref|YP_003401994.1| - 0.077 11.8 0.0 0.11 11.3 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_33 PF13671.1 gi|284163715|ref|YP_003401994.1| - 0.13 12.1 0.0 0.25 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|284163715|ref|YP_003401994.1| - 0.17 11.5 0.0 1.2 8.8 0.0 2.3 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B ABC_tran PF00005.22 gi|284163715|ref|YP_003401994.1| - 0.18 12.1 0.0 0.61 10.3 0.0 1.8 2 0 0 2 2 2 0 ABC transporter AAA_23 PF13476.1 gi|284163715|ref|YP_003401994.1| - 0.23 11.7 0.0 0.4 10.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|284163716|ref|YP_003401995.1| - 1.3e-42 145.2 0.0 1.7e-42 144.8 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.9 gi|284163716|ref|YP_003401995.1| - 8.9e-24 83.0 0.2 2.3e-23 81.7 0.2 1.7 1 1 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain ArgK PF03308.11 gi|284163716|ref|YP_003401995.1| - 0.0036 16.1 0.1 0.22 10.2 0.0 2.2 2 0 0 2 2 2 1 ArgK protein Zeta_toxin PF06414.7 gi|284163716|ref|YP_003401995.1| - 0.0078 15.3 0.0 0.015 14.4 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin UPF0079 PF02367.12 gi|284163716|ref|YP_003401995.1| - 0.0092 15.6 0.0 0.017 14.7 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_22 PF13401.1 gi|284163716|ref|YP_003401995.1| - 0.011 15.8 0.0 0.025 14.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain GTP_EFTU PF00009.22 gi|284163716|ref|YP_003401995.1| - 0.013 14.9 0.0 0.86 9.0 0.0 2.4 2 1 0 2 2 2 0 Elongation factor Tu GTP binding domain ABC_tran PF00005.22 gi|284163716|ref|YP_003401995.1| - 0.018 15.3 0.0 0.038 14.2 0.0 1.5 1 0 0 1 1 1 0 ABC transporter DUF258 PF03193.11 gi|284163716|ref|YP_003401995.1| - 0.018 14.2 0.1 0.031 13.4 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|284163716|ref|YP_003401995.1| - 0.026 14.5 0.4 0.13 12.2 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain AAA_33 PF13671.1 gi|284163716|ref|YP_003401995.1| - 0.028 14.2 0.1 0.21 11.4 0.0 2.4 2 1 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|284163716|ref|YP_003401995.1| - 0.033 14.5 0.0 0.066 13.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|284163716|ref|YP_003401995.1| - 0.035 13.6 0.0 0.099 12.1 0.0 1.8 1 0 0 1 1 1 0 P-loop containing region of AAA domain Miro PF08477.8 gi|284163716|ref|YP_003401995.1| - 0.044 14.2 0.0 0.091 13.2 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein AAA_18 PF13238.1 gi|284163716|ref|YP_003401995.1| - 0.077 13.3 0.0 0.2 11.9 0.0 1.8 1 0 0 1 1 1 0 AAA domain DUF2796 PF10986.3 gi|284163716|ref|YP_003401995.1| - 1.3 8.9 12.7 3.4 7.6 8.8 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2796) MoCF_biosynth PF00994.19 gi|284163717|ref|YP_003401996.1| - 4.9e-32 110.3 0.1 6.1e-32 110.0 0.0 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain GFO_IDH_MocA PF01408.17 gi|284163719|ref|YP_003401998.1| - 3.2e-32 111.5 2.0 3.9e-29 101.6 0.2 2.2 2 0 0 2 2 2 2 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|284163719|ref|YP_003401998.1| - 3e-09 36.6 0.0 5.3e-09 35.8 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain F420_oxidored PF03807.12 gi|284163719|ref|YP_003401998.1| - 3.1e-05 24.3 0.2 0.0001 22.6 0.0 1.9 1 1 1 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|284163719|ref|YP_003401998.1| - 0.0018 18.1 0.8 0.004 17.0 0.1 2.0 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|284163719|ref|YP_003401998.1| - 0.0048 16.2 0.6 0.01 15.2 0.1 1.7 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.14 gi|284163719|ref|YP_003401998.1| - 0.0062 15.7 0.1 0.014 14.5 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CoA_binding PF02629.14 gi|284163719|ref|YP_003401998.1| - 0.041 14.3 0.8 0.12 12.9 0.3 1.9 2 0 0 2 2 2 0 CoA binding domain NAD_binding_3 PF03447.11 gi|284163719|ref|YP_003401998.1| - 0.077 13.3 1.5 0.17 12.3 0.3 2.0 2 0 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain PadR PF03551.9 gi|284163721|ref|YP_003402000.1| - 2.1e-12 46.6 0.3 2.4e-12 46.4 0.2 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|284163721|ref|YP_003402000.1| - 0.00095 19.4 0.0 0.0012 19.1 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|284163721|ref|YP_003402000.1| - 0.0014 18.3 0.2 0.0019 17.9 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4358 PF14270.1 gi|284163721|ref|YP_003402000.1| - 0.04 13.7 0.1 0.05 13.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4358) MotA_activ PF09114.5 gi|284163721|ref|YP_003402000.1| - 0.11 12.2 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Transcription factor MotA, activation domain CSD PF00313.17 gi|284163722|ref|YP_003402001.1| - 4.9e-19 67.8 0.1 5.4e-19 67.7 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|284163722|ref|YP_003402001.1| - 0.0057 16.3 0.9 0.011 15.4 0.6 1.6 1 1 0 1 1 1 1 S1-like OB_RNB PF08206.6 gi|284163722|ref|YP_003402001.1| - 0.11 12.0 3.1 0.16 11.5 2.2 1.2 1 0 0 1 1 1 0 Ribonuclease B OB domain DUF165 PF02592.10 gi|284163723|ref|YP_003402002.1| - 1.3e-40 138.9 4.1 1.3e-40 138.9 2.9 1.7 2 0 0 2 2 2 1 Uncharacterized ACR, YhhQ family COG1738 Caps_synth_CapC PF14102.1 gi|284163723|ref|YP_003402002.1| - 0.22 11.6 9.4 0.34 11.0 0.3 3.4 1 1 3 4 4 4 0 Capsule biosynthesis CapC Peptidase_M29 PF02073.10 gi|284163724|ref|YP_003402003.1| - 2.1e-111 372.5 0.0 2.4e-111 372.3 0.0 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) DUF309 PF03745.9 gi|284163725|ref|YP_003402004.1| - 1e-16 60.1 3.9 1.6e-16 59.5 2.7 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF309) Aldo_ket_red PF00248.16 gi|284163726|ref|YP_003402005.1| - 4.4e-77 258.6 0.0 5e-77 258.5 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Lipase_GDSL_2 PF13472.1 gi|284163726|ref|YP_003402005.1| - 0.0047 17.0 0.0 0.68 10.0 0.0 2.6 2 1 0 2 2 2 2 GDSL-like Lipase/Acylhydrolase family RHH_1 PF01402.16 gi|284163726|ref|YP_003402005.1| - 0.26 11.2 1.5 1.8 8.6 0.0 3.0 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family Epimerase PF01370.16 gi|284163727|ref|YP_003402006.1| - 4.8e-23 81.8 0.0 6.6e-23 81.3 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|284163727|ref|YP_003402006.1| - 2.8e-13 49.2 0.0 3.6e-13 48.8 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|284163727|ref|YP_003402006.1| - 3.7e-13 48.9 0.0 2.3e-12 46.3 0.0 1.8 2 0 0 2 2 2 1 Male sterility protein NAD_binding_10 PF13460.1 gi|284163727|ref|YP_003402006.1| - 3.8e-10 40.0 0.0 4.9e-10 39.7 0.0 1.3 1 1 0 1 1 1 1 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|284163727|ref|YP_003402006.1| - 8.6e-09 34.7 0.4 3.4e-06 26.1 0.0 2.7 3 0 0 3 3 3 2 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|284163727|ref|YP_003402006.1| - 3.2e-05 22.9 0.1 0.00015 20.7 0.1 1.8 1 1 0 1 1 1 1 RmlD substrate binding domain NmrA PF05368.8 gi|284163727|ref|YP_003402006.1| - 0.00033 19.9 0.0 0.00054 19.2 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.20 gi|284163727|ref|YP_003402006.1| - 0.027 14.3 2.5 1.6 8.6 1.7 2.4 1 1 0 1 1 1 0 short chain dehydrogenase Ldh_1_N PF00056.18 gi|284163727|ref|YP_003402006.1| - 0.12 12.2 0.1 5.7 6.7 0.0 2.2 2 0 0 2 2 2 0 lactate/malate dehydrogenase, NAD binding domain DUF381 PF04038.7 gi|284163728|ref|YP_003402007.1| - 1.9e-21 75.8 1.0 2.6e-21 75.4 0.7 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF381) DUF372 PF04036.7 gi|284163728|ref|YP_003402007.1| - 1.9e-21 75.2 0.6 3e-21 74.5 0.4 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF372) GPW_gp25 PF04965.9 gi|284163728|ref|YP_003402007.1| - 0.011 15.2 0.0 0.013 15.0 0.0 1.2 1 0 0 1 1 1 0 Gene 25-like lysozyme Crl PF07417.7 gi|284163729|ref|YP_003402008.1| - 6.6 6.4 6.4 32 4.2 4.0 1.8 1 1 0 1 1 1 0 Transcriptional regulator Crl Creatininase PF02633.9 gi|284163731|ref|YP_003402010.1| - 1.6e-69 233.6 2.0 1.8e-69 233.4 1.4 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase ABC_tran PF00005.22 gi|284163733|ref|YP_003402012.1| - 1.2e-37 129.3 0.0 2.3e-37 128.3 0.0 1.5 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.18 gi|284163733|ref|YP_003402012.1| - 2.4e-36 125.5 1.2 3.3e-36 125.1 0.8 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region AAA_21 PF13304.1 gi|284163733|ref|YP_003402012.1| - 1.3e-05 25.3 0.0 0.00046 20.2 0.0 2.5 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|284163733|ref|YP_003402012.1| - 0.00021 20.4 0.0 0.00038 19.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Zeta_toxin PF06414.7 gi|284163733|ref|YP_003402012.1| - 0.0003 19.9 0.0 0.0006 18.9 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_17 PF13207.1 gi|284163733|ref|YP_003402012.1| - 0.0006 20.6 0.1 0.003 18.3 0.1 2.3 2 1 0 2 2 1 1 AAA domain AAA_22 PF13401.1 gi|284163733|ref|YP_003402012.1| - 0.0011 19.0 0.2 0.0065 16.6 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|284163733|ref|YP_003402012.1| - 0.0016 18.4 0.1 0.0043 17.0 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|284163733|ref|YP_003402012.1| - 0.0033 16.6 0.6 0.12 11.6 0.1 2.1 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|284163733|ref|YP_003402012.1| - 0.0039 16.6 0.1 0.012 15.1 0.1 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|284163733|ref|YP_003402012.1| - 0.0043 17.3 0.0 0.013 15.7 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|284163733|ref|YP_003402012.1| - 0.01 15.7 0.0 0.025 14.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF2107 PF09880.4 gi|284163733|ref|YP_003402012.1| - 0.011 15.6 0.4 0.011 15.6 0.3 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2107) AAA_30 PF13604.1 gi|284163733|ref|YP_003402012.1| - 0.011 15.3 0.3 0.056 13.0 0.2 2.0 1 1 0 1 1 1 0 AAA domain Guanylate_kin PF00625.16 gi|284163733|ref|YP_003402012.1| - 0.02 14.3 0.2 0.21 10.9 0.1 2.6 2 1 0 2 2 2 0 Guanylate kinase ABC_ATPase PF09818.4 gi|284163733|ref|YP_003402012.1| - 0.029 12.9 0.1 0.053 12.0 0.1 1.4 1 0 0 1 1 1 0 Predicted ATPase of the ABC class T2SE PF00437.15 gi|284163733|ref|YP_003402012.1| - 0.031 13.2 0.0 0.059 12.2 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA PF00004.24 gi|284163733|ref|YP_003402012.1| - 0.047 13.8 0.0 0.3 11.3 0.0 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|284163733|ref|YP_003402012.1| - 0.05 13.0 0.4 0.14 11.5 0.2 1.9 1 1 0 1 1 1 0 AAA-like domain AAA_14 PF13173.1 gi|284163733|ref|YP_003402012.1| - 0.063 13.1 0.1 0.18 11.7 0.0 1.8 2 0 0 2 2 1 0 AAA domain AAA_23 PF13476.1 gi|284163733|ref|YP_003402012.1| - 0.063 13.5 0.0 0.13 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|284163733|ref|YP_003402012.1| - 0.074 12.7 0.2 0.55 9.9 0.0 2.4 2 1 1 3 3 3 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.1 gi|284163733|ref|YP_003402012.1| - 0.095 12.0 0.1 0.24 10.7 0.1 1.8 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|284163733|ref|YP_003402012.1| - 0.099 11.7 0.0 0.18 10.9 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI SbcCD_C PF13558.1 gi|284163733|ref|YP_003402012.1| - 0.2 11.5 1.6 1.9 8.4 0.4 2.9 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit DUF192 PF02643.10 gi|284163734|ref|YP_003402013.1| - 4.8e-29 100.2 0.0 6.2e-29 99.8 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 DUF2020 PF09449.5 gi|284163734|ref|YP_003402013.1| - 0.0049 16.5 0.1 0.007 16.0 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF2020) MG1 PF11974.3 gi|284163734|ref|YP_003402013.1| - 0.053 14.0 0.0 0.067 13.7 0.0 1.3 1 0 0 1 1 1 0 Alpha-2-macroglobulin MG1 domain HTH_20 PF12840.2 gi|284163738|ref|YP_003402017.1| - 0.052 13.3 0.0 0.19 11.5 0.0 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain Caps_synth_CapC PF14102.1 gi|284163739|ref|YP_003402018.1| - 0.046 13.8 0.1 0.085 12.9 0.0 1.4 1 0 0 1 1 1 0 Capsule biosynthesis CapC Aldo_ket_red PF00248.16 gi|284163741|ref|YP_003402020.1| - 3.7e-65 219.5 0.0 4.5e-65 219.2 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family DUF2238 PF09997.4 gi|284163743|ref|YP_003402022.1| - 0.013 14.9 1.0 0.013 14.9 0.7 4.1 4 1 0 4 4 4 0 Predicted membrane protein (DUF2238) zf-H2C2_2 PF13465.1 gi|284163744|ref|YP_003402023.1| - 0.0054 16.9 1.3 2.8 8.3 0.1 2.2 2 0 0 2 2 2 2 Zinc-finger double domain HypA PF01155.14 gi|284163744|ref|YP_003402023.1| - 0.0064 16.1 0.6 0.0064 16.1 0.4 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|284163744|ref|YP_003402023.1| - 0.0067 16.3 1.7 0.34 10.8 0.2 2.2 2 0 0 2 2 2 1 Zinc ribbon domain zf-HYPF PF07503.7 gi|284163744|ref|YP_003402023.1| - 0.0099 15.2 0.9 0.0099 15.2 0.6 2.1 2 0 0 2 2 2 1 HypF finger DZR PF12773.2 gi|284163744|ref|YP_003402023.1| - 0.023 14.5 3.0 0.51 10.1 0.4 1.9 1 1 0 1 1 1 0 Double zinc ribbon Yippee-Mis18 PF03226.9 gi|284163744|ref|YP_003402023.1| - 0.058 13.4 1.6 0.33 11.0 1.2 1.7 1 1 1 2 2 2 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly Zn_Tnp_IS1595 PF12760.2 gi|284163744|ref|YP_003402023.1| - 0.061 13.1 5.6 0.31 10.8 1.8 2.2 1 1 0 2 2 2 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|284163744|ref|YP_003402023.1| - 0.15 11.2 0.6 0.15 11.2 0.4 1.7 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|284163744|ref|YP_003402023.1| - 0.16 12.0 2.2 0.2 11.6 0.5 1.8 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc-ribbons_6 PF07191.7 gi|284163744|ref|YP_003402023.1| - 0.3 10.8 2.3 13 5.6 0.0 2.0 1 1 1 2 2 2 0 zinc-ribbons CpXC PF14353.1 gi|284163744|ref|YP_003402023.1| - 0.53 10.2 2.8 4.4 7.2 2.0 1.9 1 1 0 1 1 1 0 CpXC protein DNA_RNApol_7kD PF03604.8 gi|284163744|ref|YP_003402023.1| - 0.92 9.0 3.5 8.7 5.9 0.6 2.1 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-C2H2_6 PF13912.1 gi|284163744|ref|YP_003402023.1| - 1.1 9.2 5.4 4.3 7.3 0.0 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger Ogr_Delta PF04606.7 gi|284163744|ref|YP_003402023.1| - 2 8.1 4.7 2.7 7.6 1.2 2.0 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger RHH_1 PF01402.16 gi|284163746|ref|YP_003402025.1| - 1.6e-05 24.5 0.1 1.6e-05 24.5 0.0 2.6 3 0 0 3 3 3 1 Ribbon-helix-helix protein, copG family DUF3562 PF12085.3 gi|284163746|ref|YP_003402025.1| - 0.1 12.4 0.9 0.2 11.4 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3562) AKNA PF12443.3 gi|284163746|ref|YP_003402025.1| - 0.11 12.5 0.2 0.21 11.6 0.1 1.6 2 0 0 2 2 2 0 AT-hook-containing transcription factor DUF4047 PF13256.1 gi|284163746|ref|YP_003402025.1| - 0.13 12.2 0.1 0.19 11.6 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4047) AAA_16 PF13191.1 gi|284163746|ref|YP_003402025.1| - 0.15 12.0 1.8 0.18 11.7 1.2 1.2 1 0 0 1 1 1 0 AAA ATPase domain IncA PF04156.9 gi|284163746|ref|YP_003402025.1| - 1.8 8.1 4.2 1.6 8.2 2.6 1.3 1 1 0 1 1 1 0 IncA protein Glyoxalase PF00903.20 gi|284163747|ref|YP_003402026.1| - 7.5e-28 97.0 2.8 7.7e-15 54.9 0.1 2.2 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|284163747|ref|YP_003402026.1| - 4.3e-14 53.0 2.9 2.1e-07 31.4 0.1 2.2 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_4 PF13669.1 gi|284163747|ref|YP_003402026.1| - 9.4e-08 32.0 1.6 0.012 15.6 0.0 2.7 1 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|284163747|ref|YP_003402026.1| - 1.1 9.1 4.1 20 5.0 0.0 2.8 2 1 0 2 2 2 0 Glyoxalase-like domain Abhydrolase_2 PF02230.11 gi|284163748|ref|YP_003402027.1| - 9.7e-19 67.6 0.0 8.6e-18 64.5 0.0 1.9 1 1 0 1 1 1 1 Phospholipase/Carboxylesterase Abhydrolase_5 PF12695.2 gi|284163748|ref|YP_003402027.1| - 7.4e-13 48.4 0.1 9.5e-13 48.1 0.1 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|284163748|ref|YP_003402027.1| - 9.2e-12 45.3 4.4 5e-09 36.3 0.7 2.1 1 1 1 2 2 2 2 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|284163748|ref|YP_003402027.1| - 0.00015 21.1 0.0 0.018 14.2 0.0 2.5 3 0 0 3 3 3 1 Prolyl oligopeptidase family FSH1 PF03959.8 gi|284163748|ref|YP_003402027.1| - 0.00038 19.9 0.0 0.0022 17.5 0.0 1.8 1 1 0 1 1 1 1 Serine hydrolase (FSH1) DLH PF01738.13 gi|284163748|ref|YP_003402027.1| - 0.00074 18.8 0.0 0.00088 18.6 0.0 1.2 1 0 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_1 PF00561.15 gi|284163748|ref|YP_003402027.1| - 0.0015 18.1 0.0 0.66 9.4 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.3 gi|284163748|ref|YP_003402027.1| - 0.028 14.2 0.0 0.053 13.3 0.0 1.5 1 0 0 1 1 1 0 Putative lysophospholipase Abhydrolase_3 PF07859.8 gi|284163748|ref|YP_003402027.1| - 0.03 13.9 0.7 0.51 9.8 0.1 2.1 1 1 1 2 2 2 0 alpha/beta hydrolase fold AP_endonuc_2 PF01261.19 gi|284163748|ref|YP_003402027.1| - 0.046 12.9 0.0 0.073 12.3 0.0 1.4 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel Esterase PF00756.15 gi|284163748|ref|YP_003402027.1| - 0.048 13.0 0.0 0.065 12.6 0.0 1.3 1 0 0 1 1 1 0 Putative esterase Glyoxalase_2 PF12681.2 gi|284163749|ref|YP_003402028.1| - 6.3e-10 39.6 0.5 1.1e-09 38.8 0.4 1.5 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|284163749|ref|YP_003402028.1| - 9.8e-09 35.2 1.7 1.4e-08 34.7 0.4 1.8 2 1 0 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|284163749|ref|YP_003402028.1| - 3e-06 27.1 0.8 0.00019 21.3 0.2 2.3 1 1 1 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily TMEM171 PF15471.1 gi|284163750|ref|YP_003402029.1| - 0.13 11.0 0.1 0.17 10.6 0.0 1.1 1 0 0 1 1 1 0 Transmembrane protein family 171 Glyoxal_oxid_N PF07250.6 gi|284163750|ref|YP_003402029.1| - 0.14 11.1 0.0 0.2 10.6 0.0 1.2 1 0 0 1 1 1 0 Glyoxal oxidase N-terminus tRNA_anti-codon PF01336.20 gi|284163751|ref|YP_003402030.1| - 0.0091 15.8 0.0 0.05 13.4 0.0 2.2 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain TFIID_30kDa PF03540.8 gi|284163751|ref|YP_003402030.1| - 0.072 12.9 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 Transcription initiation factor TFIID 23-30kDa subunit Notch PF00066.12 gi|284163751|ref|YP_003402030.1| - 0.076 13.2 0.3 0.11 12.7 0.2 1.3 1 0 0 1 1 1 0 LNR domain Oxidored_molyb PF00174.14 gi|284163752|ref|YP_003402031.1| - 1.4e-39 135.2 0.0 2e-39 134.7 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Mo-co_dimer PF03404.11 gi|284163752|ref|YP_003402031.1| - 1.8e-16 59.9 0.1 4.1e-16 58.7 0.0 1.5 1 0 0 1 1 1 1 Mo-co oxidoreductase dimerisation domain BNR PF02012.15 gi|284163752|ref|YP_003402031.1| - 0.91 9.6 3.7 0.52 10.3 0.4 2.4 2 0 0 2 2 2 0 BNR/Asp-box repeat DUF883 PF05957.8 gi|284163753|ref|YP_003402032.1| - 0.00095 19.5 2.6 0.0016 18.7 1.7 1.5 1 1 0 1 1 1 1 Bacterial protein of unknown function (DUF883) Vps55 PF04133.9 gi|284163754|ref|YP_003402033.1| - 0.089 12.5 0.9 0.11 12.2 0.6 1.1 1 0 0 1 1 1 0 Vacuolar protein sorting 55 FixQ PF05545.6 gi|284163754|ref|YP_003402033.1| - 0.27 10.9 0.3 0.27 10.9 0.2 1.7 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ Vpu PF00558.14 gi|284163754|ref|YP_003402033.1| - 3.6 7.2 7.1 0.36 10.4 1.3 1.8 2 0 0 2 2 2 0 Vpu protein COX1 PF00115.15 gi|284163755|ref|YP_003402034.1| - 4.8e-72 242.9 57.2 4.8e-72 242.9 39.7 2.1 1 1 1 2 2 2 2 Cytochrome C and Quinol oxidase polypeptide I COX2 PF00116.15 gi|284163756|ref|YP_003402035.1| - 8.6e-25 86.9 0.3 2e-24 85.7 0.1 1.7 2 0 0 2 2 2 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.1 gi|284163756|ref|YP_003402035.1| - 2.1e-11 43.6 0.2 1.1e-10 41.3 0.0 2.1 2 1 1 3 3 3 1 Cupredoxin-like domain Copper-bind PF00127.15 gi|284163756|ref|YP_003402035.1| - 0.0037 17.4 2.5 0.4 10.9 0.2 3.3 2 2 0 2 2 2 1 Copper binding proteins, plastocyanin/azurin family COX2-transmemb PF09125.5 gi|284163756|ref|YP_003402035.1| - 0.0092 15.5 0.8 0.015 14.7 0.6 1.3 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, transmembrane DUF912 PF06024.7 gi|284163757|ref|YP_003402036.1| - 0.046 13.7 0.0 0.06 13.4 0.0 1.2 1 0 0 1 1 1 0 Nucleopolyhedrovirus protein of unknown function (DUF912) SPC25 PF06703.6 gi|284163757|ref|YP_003402036.1| - 0.1 12.1 0.2 0.14 11.7 0.1 1.1 1 0 0 1 1 1 0 Microsomal signal peptidase 25 kDa subunit (SPC25) DUF3159 PF11361.3 gi|284163758|ref|YP_003402037.1| - 0.024 14.1 0.9 0.026 13.9 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3159) DsbD_2 PF13386.1 gi|284163759|ref|YP_003402038.1| - 1.6e-48 165.0 12.5 1.9e-48 164.8 8.6 1.0 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DUF2182 PF09948.4 gi|284163759|ref|YP_003402038.1| - 5.2 6.9 10.5 2.3 8.1 0.3 3.1 3 0 0 3 3 3 0 Predicted metal-binding integral membrane protein (DUF2182) E1-E2_ATPase PF00122.15 gi|284163760|ref|YP_003402039.1| - 1.2e-43 148.7 1.3 2.1e-43 148.0 0.9 1.4 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|284163760|ref|YP_003402039.1| - 2.9e-36 125.8 4.2 2.9e-36 125.8 2.9 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|284163760|ref|YP_003402039.1| - 3.3e-09 37.2 0.0 1e-08 35.5 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|284163760|ref|YP_003402039.1| - 7.5e-08 32.4 0.0 7.2e-07 29.2 0.0 2.5 2 0 0 2 2 2 1 Heavy-metal-associated domain Hydrolase_3 PF08282.7 gi|284163760|ref|YP_003402039.1| - 3.6e-05 23.4 0.6 5.6e-05 22.8 0.4 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase ATPase-cat_bd PF12156.3 gi|284163760|ref|YP_003402039.1| - 0.072 13.6 0.1 0.15 12.5 0.0 1.5 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase zf-CDGSH PF09360.5 gi|284163761|ref|YP_003402040.1| - 4.6e-12 45.5 0.3 8.4e-12 44.7 0.2 1.5 1 0 0 1 1 1 1 Iron-binding zinc finger CDGSH type 7TMR-DISM_7TM PF07695.6 gi|284163762|ref|YP_003402041.1| - 0.034 13.7 11.7 0.044 13.4 8.1 1.2 1 0 0 1 1 1 0 7TM diverse intracellular signalling DUF4191 PF13829.1 gi|284163762|ref|YP_003402041.1| - 0.26 10.3 5.5 0.078 12.0 1.8 1.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4191) YtpI PF14007.1 gi|284163762|ref|YP_003402041.1| - 0.35 10.8 0.2 0.35 10.8 0.2 2.3 1 1 1 2 2 2 0 YtpI-like protein DUF3353 PF11833.3 gi|284163762|ref|YP_003402041.1| - 2.2 7.6 10.2 2.6 7.4 7.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3353) DUF805 PF05656.9 gi|284163762|ref|YP_003402041.1| - 3.8 7.3 9.0 5.1 6.9 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF805) UPF0233 PF06781.7 gi|284163762|ref|YP_003402041.1| - 4 7.1 6.3 0.57 9.8 0.6 2.1 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0233) DUF2892 PF11127.3 gi|284163762|ref|YP_003402041.1| - 5.3 6.9 13.0 0.68 9.7 4.5 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF2892) DUF485 PF04341.7 gi|284163762|ref|YP_003402041.1| - 5.5 6.7 14.5 0.64 9.7 5.3 2.0 1 1 1 2 2 2 0 Protein of unknown function, DUF485 Ndc1_Nup PF09531.5 gi|284163762|ref|YP_003402041.1| - 9.5 4.5 6.6 11 4.3 4.6 1.0 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup Methyltransf_18 PF12847.2 gi|284163763|ref|YP_003402042.1| - 1.6e-12 47.9 0.0 3e-12 47.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|284163763|ref|YP_003402042.1| - 3.7e-10 39.2 0.0 5e-10 38.8 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_11 PF08241.7 gi|284163763|ref|YP_003402042.1| - 4.8e-09 36.5 0.0 9.4e-09 35.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|284163763|ref|YP_003402042.1| - 2.3e-08 34.2 0.0 3.5e-08 33.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|284163763|ref|YP_003402042.1| - 2.7e-08 33.5 0.0 3.3e-08 33.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|284163763|ref|YP_003402042.1| - 5.1e-08 32.7 0.0 1.1e-07 31.6 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|284163763|ref|YP_003402042.1| - 1.7e-07 30.5 0.0 2.3e-07 30.1 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|284163763|ref|YP_003402042.1| - 3.7e-07 30.1 0.5 2.2e-06 27.7 0.3 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|284163763|ref|YP_003402042.1| - 6.4e-06 26.5 0.0 1.2e-05 25.7 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|284163763|ref|YP_003402042.1| - 0.0012 18.2 0.0 0.0017 17.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain NodS PF05401.6 gi|284163763|ref|YP_003402042.1| - 0.0022 17.4 0.0 0.0033 16.8 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) TPMT PF05724.6 gi|284163763|ref|YP_003402042.1| - 0.0091 15.4 0.0 0.012 15.0 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_15 PF09445.5 gi|284163763|ref|YP_003402042.1| - 0.11 12.0 0.0 0.15 11.6 0.0 1.1 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Epimerase PF01370.16 gi|284163764|ref|YP_003402043.1| - 2.5e-30 105.6 0.0 1.6e-29 103.0 0.0 1.8 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|284163764|ref|YP_003402043.1| - 7.1e-14 51.3 0.1 1.1e-13 50.6 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|284163764|ref|YP_003402043.1| - 5.3e-13 48.4 0.0 1.3e-10 40.5 0.0 2.1 2 0 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.1 gi|284163764|ref|YP_003402043.1| - 1.3e-11 44.8 0.6 1.8e-11 44.3 0.4 1.2 1 0 0 1 1 1 1 NADH(P)-binding 3Beta_HSD PF01073.14 gi|284163764|ref|YP_003402043.1| - 6.5e-07 28.3 0.0 8.8e-07 27.8 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|284163764|ref|YP_003402043.1| - 2.8e-05 23.1 0.0 0.017 14.0 0.0 2.9 3 0 0 3 3 3 2 Polysaccharide biosynthesis protein adh_short PF00106.20 gi|284163764|ref|YP_003402043.1| - 0.00021 21.2 2.2 0.0015 18.4 1.0 2.5 2 1 0 2 2 2 1 short chain dehydrogenase ECH PF00378.15 gi|284163766|ref|YP_003402045.1| - 1.9e-41 141.8 0.0 2.5e-41 141.4 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family Acetyltransf_3 PF13302.1 gi|284163767|ref|YP_003402046.1| - 1.3e-28 99.9 0.0 1.7e-28 99.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|284163767|ref|YP_003402046.1| - 3.5e-19 69.2 0.0 4e-19 69.0 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|284163767|ref|YP_003402046.1| - 1.6e-11 44.0 0.0 2.8e-11 43.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.1 gi|284163767|ref|YP_003402046.1| - 9.9e-05 22.2 0.1 0.00015 21.6 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|284163767|ref|YP_003402046.1| - 0.00027 20.6 0.0 0.00049 19.8 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein NAD_synthase PF02540.12 gi|284163768|ref|YP_003402047.1| - 1.4e-81 272.9 0.0 1.8e-81 272.6 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|284163768|ref|YP_003402047.1| - 1.2e-05 24.1 0.0 0.0028 16.2 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase Asn_synthase PF00733.16 gi|284163768|ref|YP_003402047.1| - 0.0036 16.8 0.1 0.0056 16.1 0.0 1.4 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|284163768|ref|YP_003402047.1| - 0.035 13.3 0.0 0.27 10.4 0.0 2.0 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC Acetyltransf_4 PF13420.1 gi|284163769|ref|YP_003402048.1| - 1e-11 45.0 0.2 1.8e-11 44.2 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|284163769|ref|YP_003402048.1| - 2.9e-11 43.2 0.0 5.1e-11 42.4 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.1 gi|284163769|ref|YP_003402048.1| - 2e-08 34.5 0.1 2.8e-08 34.0 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|284163769|ref|YP_003402048.1| - 2.1e-08 34.2 0.1 1.1e-07 32.0 0.0 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|284163769|ref|YP_003402048.1| - 1.9e-06 27.9 0.0 4.2e-06 26.8 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FeoC PF09012.5 gi|284163769|ref|YP_003402048.1| - 0.0055 16.3 0.0 0.016 14.8 0.0 1.7 2 0 0 2 2 2 1 FeoC like transcriptional regulator Acetyltransf_CG PF14542.1 gi|284163769|ref|YP_003402048.1| - 0.011 15.6 0.0 0.024 14.5 0.0 1.6 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase HemN_C PF06969.11 gi|284163769|ref|YP_003402048.1| - 0.026 14.5 0.2 0.076 13.0 0.2 1.8 1 0 0 1 1 1 0 HemN C-terminal domain TFIIE_alpha PF02002.12 gi|284163769|ref|YP_003402048.1| - 0.033 13.6 0.0 0.1 12.1 0.0 1.7 1 0 0 1 1 1 0 TFIIE alpha subunit Acetyltransf_9 PF13527.1 gi|284163769|ref|YP_003402048.1| - 0.047 13.5 0.1 0.15 11.9 0.1 1.9 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain RPA_C PF08784.6 gi|284163769|ref|YP_003402048.1| - 0.05 14.0 0.0 0.12 12.7 0.0 1.6 1 0 0 1 1 1 0 Replication protein A C terminal TFIIB PF00382.14 gi|284163770|ref|YP_003402049.1| - 1.9e-47 158.9 2.6 4e-25 87.4 0.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|284163770|ref|YP_003402049.1| - 3.1e-12 45.6 1.3 5.7e-12 44.7 0.9 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_N PF00134.18 gi|284163770|ref|YP_003402049.1| - 0.0047 16.4 0.1 0.094 12.2 0.0 2.2 2 0 0 2 2 2 1 Cyclin, N-terminal domain RRN7 PF11781.3 gi|284163770|ref|YP_003402049.1| - 0.0054 16.2 2.3 0.01 15.2 1.6 1.5 1 0 0 1 1 1 1 RNA polymerase I-specific transcription initiation factor Rrn7 Sigma70_r4 PF04545.11 gi|284163770|ref|YP_003402049.1| - 0.006 15.8 1.0 0.066 12.5 0.1 3.1 2 1 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.7 gi|284163770|ref|YP_003402049.1| - 0.073 12.5 0.1 0.23 10.9 0.0 1.9 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_23 PF13384.1 gi|284163770|ref|YP_003402049.1| - 0.13 11.9 0.1 0.13 11.9 0.1 2.9 3 0 0 3 3 3 0 Homeodomain-like domain SBP PF03110.9 gi|284163770|ref|YP_003402049.1| - 0.45 10.7 4.4 0.38 10.9 0.1 2.6 2 0 0 2 2 2 0 SBP domain TrmB PF01978.14 gi|284163770|ref|YP_003402049.1| - 0.5 10.1 2.2 1.9 8.2 0.1 2.6 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB Usp PF00582.21 gi|284163772|ref|YP_003402051.1| - 1.6e-29 102.8 5.3 1.8e-29 102.7 3.7 1.0 1 0 0 1 1 1 1 Universal stress protein family DUF1285 PF06938.6 gi|284163772|ref|YP_003402051.1| - 0.099 12.6 0.3 0.28 11.1 0.1 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1285) DUF2953 PF11167.3 gi|284163773|ref|YP_003402052.1| - 0.031 14.1 2.5 0.1 12.5 1.7 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF2953) KaiC PF06745.8 gi|284163775|ref|YP_003402054.1| - 2.3e-53 180.6 0.0 2.9e-53 180.3 0.0 1.1 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|284163775|ref|YP_003402054.1| - 3.7e-08 33.0 0.0 7.2e-08 32.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|284163775|ref|YP_003402054.1| - 2.6e-05 22.7 0.4 4.8e-05 21.8 0.3 1.4 1 1 0 1 1 1 1 GvpD gas vesicle protein DnaB_C PF03796.10 gi|284163775|ref|YP_003402054.1| - 0.0011 17.9 0.0 0.084 11.7 0.0 2.2 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain AAA_24 PF13479.1 gi|284163775|ref|YP_003402054.1| - 0.0094 15.5 0.0 0.024 14.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|284163775|ref|YP_003402054.1| - 0.021 14.7 0.0 0.04 13.8 0.0 1.5 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.4 gi|284163775|ref|YP_003402054.1| - 0.03 13.2 0.0 0.04 12.8 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) RecA PF00154.16 gi|284163775|ref|YP_003402054.1| - 0.076 12.0 0.0 0.19 10.7 0.0 1.6 2 0 0 2 2 2 0 recA bacterial DNA recombination protein TrwB_AAD_bind PF10412.4 gi|284163775|ref|YP_003402054.1| - 0.13 10.8 0.0 0.25 9.9 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_33 PF13671.1 gi|284163775|ref|YP_003402054.1| - 0.14 12.0 0.0 0.3 10.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain NAD_kinase PF01513.16 gi|284163776|ref|YP_003402055.1| - 5.2e-37 127.1 0.1 5.7e-37 127.0 0.1 1.1 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|284163776|ref|YP_003402055.1| - 0.0038 16.6 0.2 0.0072 15.7 0.2 1.4 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain DSBA PF01323.15 gi|284163777|ref|YP_003402056.1| - 9.9e-35 119.8 0.0 1.1e-34 119.6 0.0 1.0 1 0 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.1 gi|284163777|ref|YP_003402056.1| - 8.5e-11 42.1 0.2 5.4e-07 29.7 0.0 2.2 1 1 0 2 2 2 2 Thioredoxin Thioredoxin_2 PF13098.1 gi|284163777|ref|YP_003402056.1| - 3.4e-05 23.9 0.3 0.00016 21.8 0.2 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_5 PF13743.1 gi|284163777|ref|YP_003402056.1| - 0.0041 16.7 0.0 0.05 13.1 0.0 2.2 1 1 1 2 2 2 1 Thioredoxin BAR PF03114.13 gi|284163777|ref|YP_003402056.1| - 0.049 13.1 0.1 0.078 12.4 0.1 1.3 1 0 0 1 1 1 0 BAR domain NIPSNAP PF07978.8 gi|284163777|ref|YP_003402056.1| - 0.079 12.9 0.1 1.4 8.9 0.0 2.4 2 1 0 2 2 2 0 NIPSNAP Thioredoxin_3 PF13192.1 gi|284163777|ref|YP_003402056.1| - 0.1 12.4 0.0 4 7.3 0.0 2.4 2 0 0 2 2 2 0 Thioredoxin domain HTH_26 PF13443.1 gi|284163778|ref|YP_003402057.1| - 0.14 12.4 0.0 21 5.4 0.0 2.4 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain Nuc-transf PF10127.4 gi|284163779|ref|YP_003402058.1| - 1.7e-26 93.0 0.1 5.5e-26 91.4 0.1 1.8 1 1 0 1 1 1 1 Predicted nucleotidyltransferase NTP_transf_2 PF01909.18 gi|284163779|ref|YP_003402058.1| - 0.0094 16.2 0.3 0.019 15.2 0.2 1.8 1 1 0 1 1 1 1 Nucleotidyltransferase domain GCHY-1 PF02649.9 gi|284163780|ref|YP_003402059.1| - 6.1e-86 288.0 2.3 6.8e-86 287.9 1.6 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 RecX PF02631.11 gi|284163780|ref|YP_003402059.1| - 0.018 15.2 0.3 0.59 10.3 0.0 2.4 2 0 0 2 2 2 0 RecX family PASTA PF03793.14 gi|284163780|ref|YP_003402059.1| - 0.094 12.3 0.0 0.28 10.8 0.0 1.8 1 0 0 1 1 1 0 PASTA domain Lactamase_B_3 PF13483.1 gi|284163781|ref|YP_003402060.1| - 3.6e-29 101.5 0.0 5e-29 101.1 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|284163781|ref|YP_003402060.1| - 7.6e-05 22.3 0.0 0.00011 21.7 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain TrmB PF01978.14 gi|284163782|ref|YP_003402061.1| - 2.7e-20 71.8 0.1 6.6e-20 70.5 0.1 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.9 gi|284163782|ref|YP_003402061.1| - 0.023 14.4 0.0 0.048 13.4 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Regulator_TrmB PF11495.3 gi|284163782|ref|YP_003402061.1| - 0.054 12.4 0.0 0.083 11.8 0.0 1.3 1 0 0 1 1 1 0 Archaeal transcriptional regulator TrmB Vir_act_alpha_C PF10400.4 gi|284163782|ref|YP_003402061.1| - 0.058 13.7 0.7 0.18 12.1 0.4 1.9 1 1 0 1 1 1 0 Virulence activator alpha C-term HTH_9 PF08221.6 gi|284163782|ref|YP_003402061.1| - 0.062 13.1 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Thioredox_DsbH PF03190.10 gi|284163783|ref|YP_003402062.1| - 8.1e-30 103.6 0.0 1.4e-29 102.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.1 gi|284163783|ref|YP_003402062.1| - 3.7e-13 49.2 0.0 7.8e-13 48.2 0.0 1.6 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin PF00085.15 gi|284163783|ref|YP_003402062.1| - 2.5e-09 36.7 0.0 4.7e-09 35.8 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|284163783|ref|YP_003402062.1| - 3.8e-07 30.2 0.0 2.1e-06 27.8 0.0 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Glyco_hydro_88 PF07470.8 gi|284163783|ref|YP_003402062.1| - 0.0026 16.8 0.4 1.8 7.5 0.0 2.8 2 1 0 3 3 3 2 Glycosyl Hydrolase Family 88 Thioredoxin_8 PF13905.1 gi|284163783|ref|YP_003402062.1| - 0.03 14.4 0.1 2.9 8.0 0.0 2.3 1 1 1 2 2 2 0 Thioredoxin-like Glyco_hydro_76 PF03663.9 gi|284163783|ref|YP_003402062.1| - 0.05 12.9 0.1 0.2 11.0 0.0 1.9 2 0 0 2 2 2 0 Glycosyl hydrolase family 76 FxsA PF04186.8 gi|284163784|ref|YP_003402063.1| - 1.2e-24 86.2 9.4 1.5e-24 85.8 6.5 1.1 1 0 0 1 1 1 1 FxsA cytoplasmic membrane protein SSF PF00474.12 gi|284163786|ref|YP_003402065.1| - 2.3e-64 217.5 28.9 3.3e-64 217.0 20.0 1.3 1 0 0 1 1 1 1 Sodium:solute symporter family CcmH PF03918.9 gi|284163787|ref|YP_003402066.1| - 0.063 12.2 0.0 0.066 12.2 0.0 1.0 1 0 0 1 1 1 0 Cytochrome C biogenesis protein Pro_dh PF01619.13 gi|284163788|ref|YP_003402067.1| - 7.9e-36 123.6 0.0 2.9e-35 121.7 0.0 1.7 1 1 0 1 1 1 1 Proline dehydrogenase HTH_10 PF04967.7 gi|284163789|ref|YP_003402068.1| - 3.1e-19 68.2 0.0 5.7e-19 67.4 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.1 gi|284163789|ref|YP_003402068.1| - 5.7e-05 22.4 0.1 0.00012 21.4 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.7 gi|284163789|ref|YP_003402068.1| - 0.00011 21.5 0.6 0.0012 18.2 0.4 2.2 1 1 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|284163789|ref|YP_003402068.1| - 0.0015 18.1 0.0 0.013 15.1 0.0 2.5 3 0 0 3 3 3 1 MarR family HTH_11 PF08279.7 gi|284163789|ref|YP_003402068.1| - 0.0018 17.8 0.0 0.0049 16.4 0.0 1.7 1 0 0 1 1 1 1 HTH domain Sigma70_r4 PF04545.11 gi|284163789|ref|YP_003402068.1| - 0.0082 15.4 0.1 0.017 14.3 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_5 PF01022.15 gi|284163789|ref|YP_003402068.1| - 0.0087 15.6 0.0 0.019 14.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TetR_N PF00440.18 gi|284163789|ref|YP_003402068.1| - 0.013 15.0 0.0 0.036 13.6 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family GntR PF00392.16 gi|284163789|ref|YP_003402068.1| - 0.015 14.7 0.1 0.03 13.7 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_AsnC-type PF13404.1 gi|284163789|ref|YP_003402068.1| - 0.015 14.8 0.3 0.044 13.3 0.0 2.0 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_Tnp_1_2 PF13022.1 gi|284163789|ref|YP_003402068.1| - 0.028 14.2 0.2 0.094 12.5 0.1 1.8 2 0 0 2 2 2 0 Helix-turn-helix of insertion element transposase HTH_20 PF12840.2 gi|284163789|ref|YP_003402068.1| - 0.031 14.0 0.1 0.09 12.5 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|284163789|ref|YP_003402068.1| - 0.036 13.7 0.2 0.13 11.9 0.0 2.0 2 0 0 2 2 2 0 Homeodomain-like domain HTH_psq PF05225.11 gi|284163789|ref|YP_003402068.1| - 0.046 13.2 0.0 0.34 10.5 0.0 2.2 2 0 0 2 2 2 0 helix-turn-helix, Psq domain GerE PF00196.14 gi|284163789|ref|YP_003402068.1| - 0.053 12.8 0.1 0.74 9.1 0.1 2.3 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family UPF0122 PF04297.9 gi|284163789|ref|YP_003402068.1| - 0.058 13.4 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like CD24 PF14984.1 gi|284163789|ref|YP_003402068.1| - 0.081 12.7 0.7 0.081 12.7 0.5 2.7 3 0 0 3 3 2 0 CD24 protein HTH_17 PF12728.2 gi|284163789|ref|YP_003402068.1| - 0.095 12.9 0.1 0.19 12.0 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|284163789|ref|YP_003402068.1| - 0.099 12.2 0.1 0.27 10.8 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain Aldedh PF00171.17 gi|284163790|ref|YP_003402069.1| - 3.7e-144 480.5 0.1 4.2e-144 480.3 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|284163790|ref|YP_003402069.1| - 0.00085 18.1 0.0 0.0015 17.3 0.0 1.3 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) IclR PF01614.13 gi|284163791|ref|YP_003402070.1| - 2.6e-27 95.0 0.0 6.5e-27 93.7 0.0 1.7 2 0 0 2 2 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|284163791|ref|YP_003402070.1| - 2e-14 52.9 0.6 2.2e-12 46.3 0.2 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|284163791|ref|YP_003402070.1| - 1.3e-09 37.7 0.2 2.7e-09 36.7 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|284163791|ref|YP_003402070.1| - 1.6e-09 37.3 0.2 5.2e-08 32.4 0.0 2.3 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|284163791|ref|YP_003402070.1| - 2.4e-08 33.2 0.0 2.1e-07 30.2 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|284163791|ref|YP_003402070.1| - 1.4e-07 31.0 0.0 3.4e-07 29.8 0.0 1.6 2 0 0 2 2 1 1 MarR family HTH_5 PF01022.15 gi|284163791|ref|YP_003402070.1| - 3.2e-06 26.6 0.1 5.8e-06 25.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|284163791|ref|YP_003402070.1| - 8.5e-05 22.8 0.2 0.00072 19.8 0.0 2.3 2 1 0 2 2 2 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|284163791|ref|YP_003402070.1| - 8.7e-05 22.0 0.0 0.0019 17.7 0.0 2.4 2 0 0 2 2 2 1 HTH domain TrmB PF01978.14 gi|284163791|ref|YP_003402070.1| - 0.00015 21.3 0.0 0.0019 17.8 0.0 2.4 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_40 PF14493.1 gi|284163791|ref|YP_003402070.1| - 0.00077 19.6 0.0 0.0015 18.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4423 PF14394.1 gi|284163791|ref|YP_003402070.1| - 0.0015 18.1 0.0 0.0047 16.4 0.0 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_23 PF13384.1 gi|284163791|ref|YP_003402070.1| - 0.0022 17.5 0.0 0.006 16.1 0.0 1.7 2 0 0 2 2 1 1 Homeodomain-like domain EAP30 PF04157.11 gi|284163791|ref|YP_003402070.1| - 0.012 14.7 0.0 0.018 14.1 0.0 1.2 1 0 0 1 1 1 0 EAP30/Vps36 family Sigma70_r4 PF04545.11 gi|284163791|ref|YP_003402070.1| - 0.023 14.0 0.1 0.12 11.6 0.0 2.2 3 0 0 3 3 3 0 Sigma-70, region 4 RPA_C PF08784.6 gi|284163791|ref|YP_003402070.1| - 0.024 15.0 0.1 0.065 13.6 0.0 1.7 2 0 0 2 2 1 0 Replication protein A C terminal HTH_36 PF13730.1 gi|284163791|ref|YP_003402070.1| - 0.025 14.7 0.0 0.044 13.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Penicillinase_R PF03965.11 gi|284163791|ref|YP_003402070.1| - 0.025 14.6 0.1 0.069 13.2 0.0 1.8 2 0 0 2 2 1 0 Penicillinase repressor HTH_10 PF04967.7 gi|284163791|ref|YP_003402070.1| - 0.037 13.6 0.1 0.078 12.5 0.1 1.5 1 0 0 1 1 1 0 HTH DNA binding domain Fe_dep_repress PF01325.14 gi|284163791|ref|YP_003402070.1| - 0.042 13.7 0.0 0.086 12.7 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_DeoR PF08220.7 gi|284163791|ref|YP_003402070.1| - 0.045 13.2 0.1 0.1 12.1 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_38 PF13936.1 gi|284163791|ref|YP_003402070.1| - 0.051 13.1 0.0 0.11 12.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_34 PF13601.1 gi|284163791|ref|YP_003402070.1| - 0.062 13.3 0.0 0.13 12.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_AsnC-type PF13404.1 gi|284163791|ref|YP_003402070.1| - 0.1 12.1 0.6 0.24 10.9 0.0 1.9 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|284163791|ref|YP_003402070.1| - 0.1 12.1 0.0 0.41 10.2 0.0 1.9 2 1 0 2 2 2 0 LexA DNA binding domain DUF3006 PF11213.3 gi|284163792|ref|YP_003402071.1| - 0.00014 21.5 0.3 0.00022 20.8 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3006) TAT_signal PF10518.4 gi|284163792|ref|YP_003402071.1| - 0.053 13.5 2.9 0.053 13.5 2.0 1.8 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence IclR PF01614.13 gi|284163793|ref|YP_003402072.1| - 1.2e-33 115.5 0.0 6.3e-32 109.9 0.0 2.2 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|284163793|ref|YP_003402072.1| - 8.5e-16 57.2 0.4 2.1e-15 55.9 0.3 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|284163793|ref|YP_003402072.1| - 5.7e-10 38.4 0.0 9.6e-10 37.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|284163793|ref|YP_003402072.1| - 9.4e-10 37.9 0.1 1.5e-08 34.0 0.0 2.3 2 0 0 2 2 2 1 HTH domain HTH_5 PF01022.15 gi|284163793|ref|YP_003402072.1| - 2.7e-09 36.5 0.0 4.9e-09 35.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|284163793|ref|YP_003402072.1| - 8.1e-09 35.0 0.0 2e-08 33.7 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|284163793|ref|YP_003402072.1| - 7.5e-08 32.0 0.1 1.6e-07 31.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|284163793|ref|YP_003402072.1| - 4.5e-07 29.4 0.0 9.2e-07 28.4 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|284163793|ref|YP_003402072.1| - 2.4e-05 23.9 0.1 4.2e-05 23.1 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|284163793|ref|YP_003402072.1| - 8.4e-05 22.8 1.1 0.0012 19.1 0.2 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain Mga PF05043.8 gi|284163793|ref|YP_003402072.1| - 0.00013 22.2 0.0 0.00022 21.4 0.0 1.3 1 0 0 1 1 1 1 Mga helix-turn-helix domain HTH_34 PF13601.1 gi|284163793|ref|YP_003402072.1| - 0.00015 21.6 0.0 0.00038 20.4 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_40 PF14493.1 gi|284163793|ref|YP_003402072.1| - 0.00027 21.1 0.1 0.00059 20.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain RP-C PF03428.8 gi|284163793|ref|YP_003402072.1| - 0.00068 19.1 0.0 0.0019 17.6 0.0 1.7 1 1 0 1 1 1 1 Replication protein C N-terminal domain HTH_23 PF13384.1 gi|284163793|ref|YP_003402072.1| - 0.0021 17.6 0.0 0.0065 16.0 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain HTH_7 PF02796.10 gi|284163793|ref|YP_003402072.1| - 0.0023 17.7 0.0 0.0051 16.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase Rrf2 PF02082.15 gi|284163793|ref|YP_003402072.1| - 0.0026 17.8 0.0 0.005 16.9 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator Sulfolobus_pRN PF05584.6 gi|284163793|ref|YP_003402072.1| - 0.0029 17.5 0.3 0.026 14.4 0.1 2.1 2 0 0 2 2 2 1 Sulfolobus plasmid regulatory protein PadR PF03551.9 gi|284163793|ref|YP_003402072.1| - 0.0041 16.8 0.7 0.017 14.8 0.1 2.3 3 0 0 3 3 2 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|284163793|ref|YP_003402072.1| - 0.005 16.6 0.0 0.0082 15.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_DeoR PF08220.7 gi|284163793|ref|YP_003402072.1| - 0.0096 15.4 0.7 0.034 13.6 0.1 2.0 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|284163793|ref|YP_003402072.1| - 0.01 15.3 0.0 0.037 13.5 0.0 2.0 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain RPA_C PF08784.6 gi|284163793|ref|YP_003402072.1| - 0.01 16.2 0.0 0.021 15.2 0.0 1.5 1 0 0 1 1 1 0 Replication protein A C terminal HTH_Tnp_ISL3 PF13542.1 gi|284163793|ref|YP_003402072.1| - 0.01 14.9 0.2 0.03 13.5 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_26 PF13443.1 gi|284163793|ref|YP_003402072.1| - 0.011 15.9 0.1 0.025 14.7 0.0 1.6 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_28 PF13518.1 gi|284163793|ref|YP_003402072.1| - 0.014 15.3 0.0 0.056 13.4 0.0 2.0 1 0 0 1 1 1 0 Helix-turn-helix domain TetR_N PF00440.18 gi|284163793|ref|YP_003402072.1| - 0.014 15.0 0.1 0.062 12.9 0.0 2.1 2 0 0 2 2 1 0 Bacterial regulatory proteins, tetR family HTH_9 PF08221.6 gi|284163793|ref|YP_003402072.1| - 0.021 14.7 0.0 0.039 13.8 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_38 PF13936.1 gi|284163793|ref|YP_003402072.1| - 0.025 14.1 0.1 0.054 13.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain FUR PF01475.14 gi|284163793|ref|YP_003402072.1| - 0.026 14.4 0.0 0.048 13.5 0.0 1.5 1 0 0 1 1 1 0 Ferric uptake regulator family Fe_dep_repress PF01325.14 gi|284163793|ref|YP_003402072.1| - 0.031 14.1 0.0 0.12 12.3 0.0 1.9 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_36 PF13730.1 gi|284163793|ref|YP_003402072.1| - 0.032 14.3 0.0 0.062 13.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain B-block_TFIIIC PF04182.7 gi|284163793|ref|YP_003402072.1| - 0.042 13.7 0.0 0.084 12.7 0.0 1.5 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_29 PF13551.1 gi|284163793|ref|YP_003402072.1| - 0.047 13.8 0.1 0.23 11.6 0.0 2.1 2 1 0 2 2 2 0 Winged helix-turn helix Sigma70_ECF PF07638.6 gi|284163793|ref|YP_003402072.1| - 0.055 13.1 0.3 0.15 11.6 0.0 1.7 2 0 0 2 2 2 0 ECF sigma factor Phage_AlpA PF05930.7 gi|284163793|ref|YP_003402072.1| - 0.089 12.5 0.1 0.22 11.2 0.0 1.6 1 0 0 1 1 1 0 Prophage CP4-57 regulatory protein (AlpA) HTH_Mga PF08280.6 gi|284163793|ref|YP_003402072.1| - 0.093 12.5 0.4 0.093 12.5 0.2 1.6 2 0 0 2 2 1 0 M protein trans-acting positive regulator (MGA) HTH domain Acyl-CoA_dh_1 PF00441.19 gi|284163794|ref|YP_003402073.1| - 9.7e-34 116.6 1.6 1.7e-33 115.8 1.1 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|284163794|ref|YP_003402073.1| - 2.9e-25 89.0 0.4 2.3e-24 86.1 0.0 2.5 2 1 1 3 3 3 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|284163794|ref|YP_003402073.1| - 3.9e-22 77.5 0.0 8.4e-22 76.4 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|284163794|ref|YP_003402073.1| - 4.2e-11 43.2 1.2 6.5e-11 42.6 0.8 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.3 gi|284163794|ref|YP_003402073.1| - 0.018 14.4 0.0 0.053 12.9 0.0 1.8 1 1 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase N terminal Acyl-CoA_dh_1 PF00441.19 gi|284163795|ref|YP_003402074.1| - 1.3e-52 177.8 4.3 1.9e-52 177.3 3.0 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|284163795|ref|YP_003402074.1| - 1.3e-28 99.8 0.2 1.3e-28 99.8 0.1 2.0 2 1 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|284163795|ref|YP_003402074.1| - 3.5e-28 98.5 6.1 5.4e-28 97.9 4.2 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|284163795|ref|YP_003402074.1| - 7.1e-18 63.8 0.3 1.4e-17 62.9 0.2 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain HpaB PF03241.8 gi|284163795|ref|YP_003402074.1| - 0.00072 18.4 1.0 0.0013 17.6 0.7 1.5 1 1 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase C terminal DUF390 PF04094.9 gi|284163795|ref|YP_003402074.1| - 0.016 13.2 2.2 0.023 12.7 1.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF390) HpaB_N PF11794.3 gi|284163795|ref|YP_003402074.1| - 0.031 13.6 6.2 0.18 11.1 1.3 3.0 2 1 0 2 2 2 0 4-hydroxyphenylacetate 3-hydroxylase N terminal 3HCDH_N PF02737.13 gi|284163796|ref|YP_003402075.1| - 1.1e-62 210.9 3.1 1.4e-62 210.4 2.2 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.17 gi|284163796|ref|YP_003402075.1| - 1.5e-31 108.6 0.1 9.8e-31 106.0 0.0 2.2 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|284163796|ref|YP_003402075.1| - 8.3e-10 38.6 0.4 2.1e-09 37.3 0.3 1.6 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus UDPG_MGDP_dh_N PF03721.9 gi|284163796|ref|YP_003402075.1| - 8.2e-06 25.3 0.2 1.3e-05 24.6 0.1 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_2 PF03446.10 gi|284163796|ref|YP_003402075.1| - 2.5e-05 24.1 3.2 2.5e-05 24.1 2.2 2.0 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|284163796|ref|YP_003402075.1| - 0.0001 22.6 6.5 0.00094 19.5 2.6 3.1 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_3 PF03447.11 gi|284163796|ref|YP_003402075.1| - 0.0014 19.0 0.1 0.0026 18.1 0.1 1.6 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ApbA PF02558.11 gi|284163796|ref|YP_003402075.1| - 0.024 14.0 0.0 0.035 13.5 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Polysacc_synt_C PF14667.1 gi|284163798|ref|YP_003402077.1| - 1.3e-17 63.9 12.7 1.3e-17 63.9 8.8 3.9 3 1 0 4 4 4 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt PF01943.12 gi|284163798|ref|YP_003402077.1| - 2.8e-13 49.7 15.9 2.8e-13 49.7 11.0 2.1 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein MVIN PF03023.9 gi|284163798|ref|YP_003402077.1| - 0.0001 20.8 14.3 0.0001 20.8 9.9 2.1 2 1 0 2 2 2 1 MviN-like protein Atg14 PF10186.4 gi|284163798|ref|YP_003402077.1| - 0.026 13.4 1.3 0.038 12.9 0.9 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DUF3391 PF11871.3 gi|284163798|ref|YP_003402077.1| - 0.25 11.5 0.9 0.37 11.0 0.6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3391) Acetyltransf_9 PF13527.1 gi|284163799|ref|YP_003402078.1| - 1.5e-20 73.3 0.0 8.2e-20 70.9 0.0 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|284163799|ref|YP_003402078.1| - 1.8e-05 24.8 0.0 0.0064 16.5 0.0 2.3 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|284163799|ref|YP_003402078.1| - 0.0029 17.7 0.0 0.009 16.1 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|284163799|ref|YP_003402078.1| - 0.011 15.7 0.0 0.026 14.5 0.0 1.7 2 0 0 2 2 2 0 Acetyltransferase (GNAT) family Polysacc_deac_1 PF01522.16 gi|284163800|ref|YP_003402079.1| - 1.3e-08 34.5 0.1 2.1e-08 33.7 0.1 1.4 1 0 0 1 1 1 1 Polysaccharide deacetylase FAD-oxidase_C PF02913.14 gi|284163801|ref|YP_003402080.1| - 1e-62 211.7 0.0 1.9e-62 210.8 0.0 1.5 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|284163801|ref|YP_003402080.1| - 4.4e-42 142.8 0.0 1.2e-41 141.4 0.0 1.8 1 0 0 1 1 1 1 FAD binding domain Fer4_8 PF13183.1 gi|284163801|ref|YP_003402080.1| - 2e-07 30.9 5.4 3.9e-07 29.9 3.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|284163801|ref|YP_003402080.1| - 2e-07 31.2 3.8 4.4e-07 30.1 2.7 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.11 gi|284163801|ref|YP_003402080.1| - 2.9e-06 27.2 0.0 0.0024 17.8 0.0 2.7 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_18 PF13746.1 gi|284163801|ref|YP_003402080.1| - 2.5e-05 24.6 2.8 4e-05 23.9 0.4 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Cytokin-bind PF09265.5 gi|284163801|ref|YP_003402080.1| - 0.00018 20.7 0.2 0.0003 20.0 0.1 1.3 1 0 0 1 1 1 1 Cytokinin dehydrogenase 1, FAD and cytokinin binding Fer4_21 PF14697.1 gi|284163801|ref|YP_003402080.1| - 0.066 13.0 3.5 0.3 10.9 0.2 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|284163801|ref|YP_003402080.1| - 0.4 10.5 7.5 0.54 10.0 0.7 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|284163801|ref|YP_003402080.1| - 0.66 10.2 9.8 0.28 11.4 1.2 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|284163801|ref|YP_003402080.1| - 2.3 8.6 10.1 1.3 9.4 1.5 2.6 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|284163801|ref|YP_003402080.1| - 5 7.2 9.6 3.2 7.8 1.7 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.22 gi|284163801|ref|YP_003402080.1| - 6.1 6.6 15.6 1.1 8.9 3.2 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain AAA_22 PF13401.1 gi|284163802|ref|YP_003402081.1| - 5.7e-13 49.1 0.2 1.5e-12 47.8 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|284163802|ref|YP_003402081.1| - 6.7e-12 45.7 0.0 2.1e-11 44.1 0.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain Cdc6_C PF09079.6 gi|284163802|ref|YP_003402081.1| - 3.7e-11 42.5 0.3 1.5e-10 40.6 0.1 2.0 2 0 0 2 2 2 1 CDC6, C terminal AAA PF00004.24 gi|284163802|ref|YP_003402081.1| - 1.3e-06 28.6 1.4 9.8e-06 25.7 1.0 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|284163802|ref|YP_003402081.1| - 2e-05 24.1 0.4 0.00016 21.1 0.0 2.4 2 1 1 3 3 3 1 Sigma-54 interaction domain DUF815 PF05673.8 gi|284163802|ref|YP_003402081.1| - 0.00017 20.6 0.0 0.00033 19.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) PhoH PF02562.11 gi|284163802|ref|YP_003402081.1| - 0.00051 19.3 0.1 0.27 10.4 0.0 2.3 2 0 0 2 2 2 2 PhoH-like protein Arch_ATPase PF01637.13 gi|284163802|ref|YP_003402081.1| - 0.0013 18.4 0.1 0.0028 17.3 0.0 1.6 1 0 0 1 1 1 1 Archaeal ATPase AAA_24 PF13479.1 gi|284163802|ref|YP_003402081.1| - 0.002 17.7 0.1 0.0034 17.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain NB-ARC PF00931.17 gi|284163802|ref|YP_003402081.1| - 0.0029 16.5 0.0 0.0044 15.9 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain AAA_5 PF07728.9 gi|284163802|ref|YP_003402081.1| - 0.0034 17.1 0.4 0.022 14.4 0.3 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) DEAD PF00270.24 gi|284163802|ref|YP_003402081.1| - 0.0042 16.5 1.3 1.6 8.2 0.1 2.3 1 1 0 2 2 2 2 DEAD/DEAH box helicase Sigma54_activ_2 PF14532.1 gi|284163802|ref|YP_003402081.1| - 0.0056 16.7 0.1 0.016 15.2 0.0 1.8 2 0 0 2 2 2 1 Sigma-54 interaction domain NACHT PF05729.7 gi|284163802|ref|YP_003402081.1| - 0.007 16.0 0.0 0.012 15.2 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_2 PF07724.9 gi|284163802|ref|YP_003402081.1| - 0.0088 15.9 0.0 0.021 14.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) RNA_helicase PF00910.17 gi|284163802|ref|YP_003402081.1| - 0.04 14.0 0.1 0.11 12.6 0.0 1.8 2 0 0 2 2 2 0 RNA helicase DUF2075 PF09848.4 gi|284163802|ref|YP_003402081.1| - 0.053 12.4 0.0 0.077 11.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_25 PF13481.1 gi|284163802|ref|YP_003402081.1| - 0.069 12.5 0.7 0.21 10.9 0.1 2.0 2 1 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.20 gi|284163802|ref|YP_003402081.1| - 0.08 12.4 0.0 0.14 11.5 0.0 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Torsin PF06309.6 gi|284163802|ref|YP_003402081.1| - 0.082 12.7 0.0 0.19 11.6 0.0 1.6 1 0 0 1 1 1 0 Torsin T2SE PF00437.15 gi|284163802|ref|YP_003402081.1| - 0.082 11.7 0.3 0.2 10.5 0.1 1.7 2 0 0 2 2 2 0 Type II/IV secretion system protein ABC_tran PF00005.22 gi|284163802|ref|YP_003402081.1| - 0.1 12.9 0.0 0.23 11.7 0.0 1.6 1 0 0 1 1 1 0 ABC transporter IstB_IS21 PF01695.12 gi|284163802|ref|YP_003402081.1| - 0.12 11.8 1.0 2.8 7.3 0.0 2.5 3 0 0 3 3 2 0 IstB-like ATP binding protein AAA_17 PF13207.1 gi|284163802|ref|YP_003402081.1| - 0.49 11.2 3.2 5.6 7.8 2.2 2.7 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|284163802|ref|YP_003402081.1| - 2.9 8.1 5.7 5.6 7.2 3.1 2.2 1 1 1 2 2 2 0 AAA domain HTH_AsnC-type PF13404.1 gi|284163803|ref|YP_003402082.1| - 1.6e-06 27.5 0.0 0.0018 17.7 0.0 2.8 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain Acetyltransf_4 PF13420.1 gi|284163804|ref|YP_003402083.1| - 1.7e-16 60.5 0.0 2.8e-16 59.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|284163804|ref|YP_003402083.1| - 3.9e-16 58.8 0.0 9.2e-16 57.6 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|284163804|ref|YP_003402083.1| - 4.1e-10 39.7 0.0 6.3e-10 39.1 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|284163804|ref|YP_003402083.1| - 4.3e-10 39.9 0.1 6.7e-10 39.2 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|284163804|ref|YP_003402083.1| - 2.7e-07 30.6 0.0 5.8e-07 29.5 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|284163804|ref|YP_003402083.1| - 0.00082 19.2 0.0 0.0017 18.1 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|284163804|ref|YP_003402083.1| - 0.00089 19.1 0.0 0.0022 17.8 0.0 1.7 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase FR47 PF08445.5 gi|284163804|ref|YP_003402083.1| - 0.019 14.7 0.0 0.039 13.7 0.0 1.5 1 0 0 1 1 1 0 FR47-like protein Glycos_transf_3 PF00591.16 gi|284163805|ref|YP_003402084.1| - 4.6e-33 114.6 0.0 7.7e-33 113.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|284163805|ref|YP_003402084.1| - 1.2e-13 50.3 0.0 1e-12 47.4 0.0 2.5 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain Tol_Tol_Ttg2 PF05494.7 gi|284163805|ref|YP_003402084.1| - 0.03 13.8 0.0 0.078 12.5 0.0 1.7 2 0 0 2 2 2 0 Toluene tolerance, Ttg2 adh_short PF00106.20 gi|284163806|ref|YP_003402085.1| - 5.7e-36 123.9 2.2 7.4e-36 123.5 1.5 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|284163806|ref|YP_003402085.1| - 9.3e-33 113.9 0.0 1.1e-32 113.7 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|284163806|ref|YP_003402085.1| - 4.9e-14 52.3 0.5 6.4e-14 52.0 0.3 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|284163806|ref|YP_003402085.1| - 0.00077 18.9 0.8 0.0031 16.9 0.5 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 2-Hacid_dh_C PF02826.14 gi|284163806|ref|YP_003402085.1| - 0.0096 15.0 0.1 0.016 14.3 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|284163806|ref|YP_003402085.1| - 0.046 13.3 0.8 0.084 12.5 0.3 1.6 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.16 gi|284163806|ref|YP_003402085.1| - 0.063 13.1 1.5 0.17 11.6 0.3 2.1 3 0 0 3 3 3 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_10 PF13460.1 gi|284163806|ref|YP_003402085.1| - 0.077 12.9 0.8 0.11 12.5 0.6 1.3 1 0 0 1 1 1 0 NADH(P)-binding Sm_multidrug_ex PF06695.6 gi|284163807|ref|YP_003402086.1| - 0.021 15.0 0.1 0.035 14.2 0.0 1.5 1 1 0 1 1 1 0 Putative small multi-drug export protein AstE_AspA PF04952.9 gi|284163808|ref|YP_003402087.1| - 1.6e-33 115.8 0.0 1.9e-33 115.6 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M14 PF00246.19 gi|284163808|ref|YP_003402087.1| - 8.6e-05 22.2 0.0 0.00045 19.9 0.0 1.9 1 1 0 1 1 1 1 Zinc carboxypeptidase Response_reg PF00072.19 gi|284163809|ref|YP_003402088.1| - 3.4e-18 65.6 0.0 4.2e-18 65.3 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain Pro_isomerase PF00160.16 gi|284163810|ref|YP_003402089.1| - 5.8e-49 166.2 0.0 6.6e-49 166.0 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD PAS_4 PF08448.5 gi|284163811|ref|YP_003402090.1| - 1.5e-95 314.6 46.1 2.9e-15 56.2 0.2 9.5 9 0 0 9 9 9 9 PAS fold PAS_9 PF13426.1 gi|284163811|ref|YP_003402090.1| - 9.6e-75 247.6 18.4 1.9e-12 47.4 0.0 9.5 9 0 0 9 9 9 9 PAS domain PAS PF00989.19 gi|284163811|ref|YP_003402090.1| - 3.9e-42 142.5 9.5 1.7e-14 53.5 0.0 9.5 9 1 0 9 9 9 5 PAS fold PAS_3 PF08447.6 gi|284163811|ref|YP_003402090.1| - 2.5e-34 117.2 2.0 1.2e-15 57.3 0.0 7.1 6 0 0 6 6 6 4 PAS fold HATPase_c PF02518.21 gi|284163811|ref|YP_003402090.1| - 9.1e-29 99.4 0.0 2.1e-28 98.2 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|284163811|ref|YP_003402090.1| - 1.2e-25 88.4 3.6 1.3e-08 34.3 0.0 8.2 8 0 0 8 8 8 3 PAS domain PAS_10 PF13596.1 gi|284163811|ref|YP_003402090.1| - 2.2e-15 56.8 0.4 0.21 11.8 0.0 8.2 8 0 0 8 8 8 3 PAS domain PAS_7 PF12860.2 gi|284163811|ref|YP_003402090.1| - 1.5e-13 50.7 18.5 0.00041 20.3 0.1 9.3 10 1 0 10 10 9 2 PAS fold GAF_2 PF13185.1 gi|284163811|ref|YP_003402090.1| - 2.5e-10 41.0 10.3 2.7e-09 37.6 0.5 5.1 6 0 0 6 6 5 1 GAF domain GAF_3 PF13492.1 gi|284163811|ref|YP_003402090.1| - 7.8e-10 38.9 12.8 4.4e-09 36.5 0.1 5.4 7 0 0 7 7 6 1 GAF domain HisKA PF00512.20 gi|284163811|ref|YP_003402090.1| - 8.9e-10 38.4 0.1 8.9e-10 38.4 0.1 3.5 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain GAF PF01590.21 gi|284163811|ref|YP_003402090.1| - 2e-08 34.5 0.9 2e-08 34.5 0.7 2.3 2 0 0 2 2 2 1 GAF domain HATPase_c_5 PF14501.1 gi|284163811|ref|YP_003402090.1| - 0.00039 20.0 0.0 0.00075 19.1 0.0 1.5 1 0 0 1 1 1 1 GHKL domain ApoLp-III PF07464.6 gi|284163811|ref|YP_003402090.1| - 0.05 13.6 0.0 0.12 12.3 0.0 1.6 1 0 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) RolB_RolC PF02027.12 gi|284163811|ref|YP_003402090.1| - 3.9 6.5 4.7 3.2 6.8 0.0 2.8 3 0 0 3 3 3 0 RolB/RolC glucosidase family adh_short PF00106.20 gi|284163812|ref|YP_003402091.1| - 1.5e-20 73.7 1.4 3.1e-20 72.7 0.9 1.7 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|284163812|ref|YP_003402091.1| - 5.2e-08 32.7 0.3 9.4e-08 31.9 0.2 1.4 1 1 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|284163812|ref|YP_003402091.1| - 1.3e-06 28.0 0.0 1.8e-06 27.5 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family adh_short_C2 PF13561.1 gi|284163812|ref|YP_003402091.1| - 1e-05 25.4 0.0 1.9e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase NAD_binding_10 PF13460.1 gi|284163812|ref|YP_003402091.1| - 0.00065 19.7 0.1 0.0013 18.7 0.1 1.6 1 0 0 1 1 1 1 NADH(P)-binding RmlD_sub_bind PF04321.12 gi|284163812|ref|YP_003402091.1| - 0.0024 16.8 0.1 0.0036 16.2 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Fer4_15 PF13459.1 gi|284163814|ref|YP_003402093.1| - 0.05 14.1 2.1 0.077 13.5 0.5 2.1 2 1 1 3 3 3 0 4Fe-4S single cluster domain Response_reg PF00072.19 gi|284163816|ref|YP_003402095.1| - 4.2e-15 55.7 0.0 5.1e-15 55.4 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain Aldedh PF00171.17 gi|284163817|ref|YP_003402096.1| - 1.8e-159 530.9 0.2 2.1e-159 530.7 0.1 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF2484 PF10658.4 gi|284163818|ref|YP_003402097.1| - 5 7.3 6.3 2.2 8.4 0.4 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF2484) PTS_2-RNA PF01885.11 gi|284163819|ref|YP_003402098.1| - 1.1e-41 142.2 0.0 1.3e-41 141.9 0.0 1.0 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family QRPTase_C PF01729.14 gi|284163820|ref|YP_003402099.1| - 6e-55 185.3 1.8 7.6e-55 185.0 1.2 1.1 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|284163820|ref|YP_003402099.1| - 5.1e-20 71.0 0.2 8.9e-20 70.3 0.1 1.4 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain FAD_binding_2 PF00890.19 gi|284163821|ref|YP_003402100.1| - 1.2e-78 264.8 4.9 1.4e-78 264.5 3.4 1.1 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|284163821|ref|YP_003402100.1| - 8e-13 48.7 0.4 1.4e-11 44.6 0.3 3.2 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|284163821|ref|YP_003402100.1| - 9.3e-13 47.8 1.2 3.6e-10 39.2 0.1 2.4 1 1 0 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.17 gi|284163821|ref|YP_003402100.1| - 6.5e-10 38.4 1.1 1.2e-06 27.6 0.9 2.2 2 0 0 2 2 2 2 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|284163821|ref|YP_003402100.1| - 5.1e-08 32.4 9.7 2.8e-07 29.9 6.7 2.1 1 1 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|284163821|ref|YP_003402100.1| - 2.1e-05 24.4 0.3 5.3e-05 23.1 0.2 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Succ_DH_flav_C PF02910.15 gi|284163821|ref|YP_003402100.1| - 8.1e-05 22.4 0.1 0.00015 21.6 0.1 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term HI0933_like PF03486.9 gi|284163821|ref|YP_003402100.1| - 8.7e-05 21.1 0.8 0.0047 15.4 0.7 2.2 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_3 PF01494.14 gi|284163821|ref|YP_003402100.1| - 0.002 17.2 0.2 0.0046 16.0 0.1 1.7 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.22 gi|284163821|ref|YP_003402100.1| - 0.012 16.0 0.1 0.042 14.2 0.1 2.0 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|284163821|ref|YP_003402100.1| - 0.028 13.3 0.3 0.041 12.8 0.2 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein AlaDh_PNT_C PF01262.16 gi|284163821|ref|YP_003402100.1| - 0.041 13.4 0.0 0.087 12.3 0.0 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.12 gi|284163821|ref|YP_003402100.1| - 0.044 12.8 0.5 0.13 11.3 0.1 1.9 2 0 0 2 2 2 0 Thi4 family 3HCDH_N PF02737.13 gi|284163821|ref|YP_003402100.1| - 0.17 11.5 0.5 0.45 10.1 0.4 1.6 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NadA PF02445.11 gi|284163822|ref|YP_003402101.1| - 5.1e-101 337.3 0.1 5.9e-101 337.1 0.0 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein GFO_IDH_MocA PF01408.17 gi|284163823|ref|YP_003402102.1| - 1.3e-25 90.1 0.1 2.1e-25 89.5 0.1 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|284163823|ref|YP_003402102.1| - 6.2e-13 48.5 0.0 1.5e-12 47.3 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Semialdhyde_dh PF01118.19 gi|284163823|ref|YP_003402102.1| - 0.0045 17.2 0.0 0.0087 16.3 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Bac_luciferase PF00296.15 gi|284163824|ref|YP_003402103.1| - 8.6e-66 222.1 13.6 1.1e-65 221.8 9.4 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase Arabinose_bd PF12625.2 gi|284163825|ref|YP_003402104.1| - 0.063 13.0 0.3 0.11 12.2 0.1 1.4 1 1 0 1 1 1 0 Arabinose-binding domain of AraC transcription regulator, N-term HTH_10 PF04967.7 gi|284163826|ref|YP_003402105.1| - 2.2e-15 55.9 0.1 1.2e-14 53.5 0.0 2.0 2 0 0 2 2 2 1 HTH DNA binding domain MarR_2 PF12802.2 gi|284163826|ref|YP_003402105.1| - 0.00045 19.8 0.0 0.0014 18.2 0.0 1.9 1 0 0 1 1 1 1 MarR family Sigma70_r4 PF04545.11 gi|284163826|ref|YP_003402105.1| - 0.00084 18.5 0.2 0.0023 17.2 0.0 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.7 gi|284163826|ref|YP_003402105.1| - 0.001 18.4 0.2 0.0024 17.2 0.1 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_AsnC-type PF13404.1 gi|284163826|ref|YP_003402105.1| - 0.0028 17.1 0.4 0.0074 15.8 0.3 1.8 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|284163826|ref|YP_003402105.1| - 0.009 15.3 0.0 0.02 14.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|284163826|ref|YP_003402105.1| - 0.017 15.4 0.0 0.036 14.3 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|284163826|ref|YP_003402105.1| - 0.044 13.4 0.0 0.087 12.5 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_6 PF01418.12 gi|284163826|ref|YP_003402105.1| - 0.072 12.8 0.1 1.1 8.9 0.0 2.6 3 0 0 3 3 3 0 Helix-turn-helix domain, rpiR family HTH_38 PF13936.1 gi|284163826|ref|YP_003402105.1| - 0.12 11.9 0.0 4.2 7.0 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain hemP PF10636.4 gi|284163826|ref|YP_003402105.1| - 0.15 11.7 0.0 0.29 10.7 0.0 1.4 1 0 0 1 1 1 0 Hemin uptake protein hemP Amidohydro_3 PF07969.6 gi|284163827|ref|YP_003402106.1| - 1.2e-81 275.0 9.6 1.7e-79 267.9 6.7 2.0 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|284163827|ref|YP_003402106.1| - 9.8e-13 47.7 0.1 3.1e-12 46.1 0.0 1.9 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|284163827|ref|YP_003402106.1| - 2.6e-11 44.1 23.3 6.9e-06 26.2 9.5 2.8 1 1 1 2 2 2 2 Amidohydrolase Amidohydro_1 PF01979.15 gi|284163827|ref|YP_003402106.1| - 5.4e-11 42.7 2.2 2.4e-05 24.1 0.1 3.2 2 1 0 2 2 2 2 Amidohydrolase family Urease_alpha PF00449.15 gi|284163827|ref|YP_003402106.1| - 0.027 14.5 0.3 0.094 12.8 0.1 1.9 2 0 0 2 2 2 0 Urease alpha-subunit, N-terminal domain DUF3325 PF11804.3 gi|284163828|ref|YP_003402107.1| - 0.013 15.4 0.8 0.013 15.4 0.6 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3325) DUF368 PF04018.8 gi|284163828|ref|YP_003402107.1| - 0.055 12.6 0.7 0.068 12.3 0.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF368) HMG-CoA_red PF00368.13 gi|284163829|ref|YP_003402108.1| - 4.9e-139 463.1 4.5 5.5e-139 462.9 3.1 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase CcdA PF07362.7 gi|284163829|ref|YP_003402108.1| - 0.028 14.2 0.2 0.081 12.8 0.2 1.8 1 0 0 1 1 1 0 Post-segregation antitoxin CcdA TerY-C PF15616.1 gi|284163831|ref|YP_003402110.1| - 0.024 14.5 0.4 0.036 13.9 0.3 1.3 1 0 0 1 1 1 0 TerY-C metal binding domain HypA PF01155.14 gi|284163831|ref|YP_003402110.1| - 0.035 13.8 1.3 0.096 12.3 0.5 1.9 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|284163831|ref|YP_003402110.1| - 0.089 12.7 1.2 0.26 11.2 0.8 1.8 1 0 0 1 1 1 0 Zinc ribbon domain TFIIS_C PF01096.13 gi|284163831|ref|YP_003402110.1| - 0.11 12.1 2.7 0.72 9.5 0.3 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zinc_ribbon_5 PF13719.1 gi|284163831|ref|YP_003402110.1| - 0.12 11.9 2.3 8.7 6.0 0.2 2.5 2 0 0 2 2 2 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|284163831|ref|YP_003402110.1| - 0.13 11.9 1.0 0.26 10.9 0.7 1.4 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit PhnA_Zn_Ribbon PF08274.7 gi|284163831|ref|YP_003402110.1| - 0.14 11.9 0.4 5.1 6.9 0.0 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zinc_ribbon_4 PF13717.1 gi|284163831|ref|YP_003402110.1| - 0.15 11.7 2.3 10 5.9 0.2 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zf-CSL PF05207.8 gi|284163831|ref|YP_003402110.1| - 0.4 10.2 1.9 8.2 6.0 0.2 2.6 2 0 0 2 2 2 0 CSL zinc finger Zn_Tnp_IS1595 PF12760.2 gi|284163831|ref|YP_003402110.1| - 0.72 9.7 3.5 0.42 10.4 0.4 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|284163831|ref|YP_003402110.1| - 1.3 8.7 3.6 0.92 9.2 0.3 2.2 2 1 0 2 2 2 0 Putative transposase DNA-binding domain Cupin_2 PF07883.6 gi|284163832|ref|YP_003402111.1| - 1.9e-18 65.7 1.0 2.4e-18 65.4 0.7 1.1 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|284163832|ref|YP_003402111.1| - 6.8e-06 25.8 0.7 9e-06 25.4 0.5 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.13 gi|284163832|ref|YP_003402111.1| - 0.0002 20.9 0.0 0.00025 20.6 0.0 1.0 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_1 PF00190.17 gi|284163832|ref|YP_003402111.1| - 0.0012 18.2 0.0 0.0018 17.7 0.0 1.3 1 1 0 1 1 1 1 Cupin Cupin_3 PF05899.7 gi|284163832|ref|YP_003402111.1| - 0.0013 18.0 0.0 0.0017 17.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) EutQ PF06249.7 gi|284163832|ref|YP_003402111.1| - 0.0018 17.8 0.0 0.0022 17.5 0.0 1.1 1 0 0 1 1 1 1 Ethanolamine utilisation protein EutQ CENP-C_C PF11699.3 gi|284163832|ref|YP_003402111.1| - 0.13 12.2 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 Mif2/CENP-C like Cupin_7 PF12973.2 gi|284163832|ref|YP_003402111.1| - 0.13 12.0 0.1 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 ChrR Cupin-like domain Nramp PF01566.13 gi|284163833|ref|YP_003402112.1| - 4.8e-54 183.4 33.9 4.8e-54 183.4 23.5 1.6 2 0 0 2 2 2 1 Natural resistance-associated macrophage protein adh_short PF00106.20 gi|284163834|ref|YP_003402113.1| - 3e-33 115.1 0.1 5e-33 114.3 0.1 1.4 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|284163834|ref|YP_003402113.1| - 1.3e-19 70.8 0.0 1.8e-19 70.4 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|284163834|ref|YP_003402113.1| - 1e-10 41.5 0.1 1.6e-10 40.9 0.0 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|284163834|ref|YP_003402113.1| - 2.5e-05 23.8 0.0 6.3e-05 22.5 0.0 1.7 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|284163834|ref|YP_003402113.1| - 0.0011 19.0 0.3 0.002 18.1 0.2 1.5 1 0 0 1 1 1 1 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|284163834|ref|YP_003402113.1| - 0.012 14.5 0.0 0.015 14.1 0.0 1.1 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein TrkA_N PF02254.13 gi|284163834|ref|YP_003402113.1| - 0.017 15.1 0.2 0.029 14.3 0.1 1.4 1 0 0 1 1 1 0 TrkA-N domain RmlD_sub_bind PF04321.12 gi|284163834|ref|YP_003402113.1| - 0.13 11.1 0.0 0.18 10.6 0.0 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|284163834|ref|YP_003402113.1| - 0.17 10.5 0.0 0.22 10.1 0.0 1.3 1 1 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family HD PF01966.17 gi|284163835|ref|YP_003402114.1| - 2e-11 43.9 1.1 3.2e-11 43.2 0.8 1.3 1 0 0 1 1 1 1 HD domain Acetyltransf_1 PF00583.19 gi|284163836|ref|YP_003402115.1| - 9.2e-15 54.4 0.4 1.4e-14 53.8 0.3 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|284163836|ref|YP_003402115.1| - 1.5e-12 47.6 0.2 1.8e-12 47.3 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|284163836|ref|YP_003402115.1| - 2.5e-12 46.7 0.0 3.5e-12 46.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|284163836|ref|YP_003402115.1| - 9.1e-07 28.7 0.6 2.4e-06 27.4 0.4 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_5 PF13444.1 gi|284163836|ref|YP_003402115.1| - 5.4e-06 26.9 1.2 1.6e-05 25.3 0.4 2.0 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|284163836|ref|YP_003402115.1| - 9.7e-06 25.6 0.0 1.3e-05 25.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|284163836|ref|YP_003402115.1| - 0.00018 21.1 0.0 0.00027 20.6 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.1 gi|284163836|ref|YP_003402115.1| - 0.047 13.5 0.3 0.082 12.8 0.2 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase PUA PF01472.15 gi|284163836|ref|YP_003402115.1| - 0.1 12.3 0.2 0.16 11.6 0.2 1.4 1 0 0 1 1 1 0 PUA domain NUDIX PF00293.23 gi|284163837|ref|YP_003402116.1| - 0.0013 18.4 0.1 0.0019 17.8 0.1 1.2 1 0 0 1 1 1 1 NUDIX domain HATPase_c PF02518.21 gi|284163838|ref|YP_003402117.1| - 3.7e-18 65.2 0.0 6.2e-18 64.5 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|284163838|ref|YP_003402117.1| - 1.7e-06 27.8 0.0 3.5e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA PF00512.20 gi|284163838|ref|YP_003402117.1| - 0.0017 18.3 2.1 0.0028 17.6 0.9 1.8 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.1 gi|284163838|ref|YP_003402117.1| - 0.0051 16.5 0.0 0.011 15.4 0.0 1.4 1 1 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.1 gi|284163838|ref|YP_003402117.1| - 0.15 11.7 0.0 0.24 11.0 0.0 1.2 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Iso_dh PF00180.15 gi|284163839|ref|YP_003402118.1| - 1e-102 343.6 0.0 1.5e-102 343.1 0.0 1.2 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase DZR PF12773.2 gi|284163840|ref|YP_003402119.1| - 0.00035 20.3 1.2 0.00038 20.1 0.8 1.1 1 0 0 1 1 1 1 Double zinc ribbon Prok-RING_1 PF14446.1 gi|284163840|ref|YP_003402119.1| - 0.004 16.8 0.2 0.0042 16.7 0.1 1.1 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 zinc-ribbons_6 PF07191.7 gi|284163840|ref|YP_003402119.1| - 0.0041 16.8 1.9 0.005 16.5 1.3 1.1 1 0 0 1 1 1 1 zinc-ribbons OrfB_Zn_ribbon PF07282.6 gi|284163840|ref|YP_003402119.1| - 0.0051 16.4 0.5 0.0053 16.3 0.3 1.0 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Auto_anti-p27 PF06677.7 gi|284163840|ref|YP_003402119.1| - 0.0065 16.2 0.8 0.0084 15.8 0.5 1.2 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Nudix_N_2 PF14803.1 gi|284163840|ref|YP_003402119.1| - 0.0079 15.8 1.5 1.7 8.4 0.1 2.2 2 0 0 2 2 2 2 Nudix N-terminal UPF0547 PF10571.4 gi|284163840|ref|YP_003402119.1| - 0.024 14.3 6.2 0.14 11.8 4.3 1.9 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 HypA PF01155.14 gi|284163840|ref|YP_003402119.1| - 0.088 12.5 0.7 0.081 12.6 0.5 1.0 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|284163840|ref|YP_003402119.1| - 0.096 11.9 5.0 0.5 9.6 3.9 1.8 1 1 1 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|284163840|ref|YP_003402119.1| - 0.16 11.5 2.7 0.33 10.4 0.1 2.0 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain RecR PF02132.10 gi|284163840|ref|YP_003402119.1| - 0.22 10.9 1.3 3.8 7.0 0.0 2.1 1 1 1 2 2 2 0 RecR protein Integrase_Zn PF02022.14 gi|284163840|ref|YP_003402119.1| - 0.26 10.7 3.4 4.8 6.7 0.2 2.1 2 0 0 2 2 2 0 Integrase Zinc binding domain Cys_rich_CPCC PF14206.1 gi|284163840|ref|YP_003402119.1| - 0.27 10.8 2.0 0.29 10.6 1.4 1.1 1 0 0 1 1 1 0 Cysteine-rich CPCC zf-tcix PF14952.1 gi|284163840|ref|YP_003402119.1| - 0.42 9.9 3.6 3.7 6.9 0.1 2.1 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zinc_ribbon_2 PF13240.1 gi|284163840|ref|YP_003402119.1| - 0.5 9.9 4.8 3 7.4 3.4 1.9 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|284163840|ref|YP_003402119.1| - 0.86 9.2 3.1 9.8 5.8 0.3 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|284163840|ref|YP_003402119.1| - 0.87 9.3 3.2 11 5.8 0.3 2.1 2 0 0 2 2 2 0 zinc-ribbon domain DUF35_N PF12172.3 gi|284163840|ref|YP_003402119.1| - 1 9.3 4.5 2.4 8.1 0.6 2.0 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-IS66 PF13005.2 gi|284163840|ref|YP_003402119.1| - 1.3 9.0 5.9 2 8.4 0.2 2.1 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-RING_3 PF14369.1 gi|284163840|ref|YP_003402119.1| - 1.4 8.9 6.9 5.2 7.1 0.3 2.1 1 1 1 2 2 2 0 zinc-finger Zn-ribbon_8 PF09723.5 gi|284163840|ref|YP_003402119.1| - 2 8.4 6.0 28 4.7 4.2 2.0 1 1 0 1 1 1 0 Zinc ribbon domain DUF164 PF02591.10 gi|284163840|ref|YP_003402119.1| - 2 8.3 4.6 3 7.7 0.1 2.0 1 1 1 2 2 2 0 Putative zinc ribbon domain DUF2387 PF09526.5 gi|284163840|ref|YP_003402119.1| - 2.1 8.3 5.8 1.9 8.4 0.3 2.0 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) Opy2 PF09463.5 gi|284163840|ref|YP_003402119.1| - 2.6 8.1 7.5 14 5.8 0.7 1.9 1 1 0 1 1 1 0 Opy2 protein Zn_Tnp_IS1595 PF12760.2 gi|284163840|ref|YP_003402119.1| - 3.8 7.3 6.6 36 4.2 4.6 2.0 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-C4_Topoisom PF01396.14 gi|284163840|ref|YP_003402119.1| - 3.8 7.0 5.5 6.4 6.3 0.1 2.1 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Zn_Tnp_IS1 PF03811.8 gi|284163840|ref|YP_003402119.1| - 4.2 6.9 7.4 5.7 6.5 0.8 2.1 1 1 1 2 2 2 0 InsA N-terminal domain zf-TFIIB PF13453.1 gi|284163840|ref|YP_003402119.1| - 5.5 6.2 6.9 1.2e+02 2.0 4.8 2.2 1 1 0 1 1 1 0 Transcription factor zinc-finger PhnA_Zn_Ribbon PF08274.7 gi|284163840|ref|YP_003402119.1| - 5.7 6.8 7.8 13 5.7 0.7 2.1 1 1 0 1 1 1 0 PhnA Zinc-Ribbon DNA_ligase_ZBD PF03119.11 gi|284163840|ref|YP_003402119.1| - 7.6 6.3 8.2 5.8 6.7 0.4 2.1 1 1 1 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Peptidase_M24 PF00557.19 gi|284163841|ref|YP_003402120.1| - 1.6e-45 155.2 0.4 2e-45 154.9 0.3 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 NOB1_Zn_bind PF08772.6 gi|284163842|ref|YP_003402121.1| - 0.0014 18.3 1.1 0.069 12.9 0.0 2.1 1 1 1 2 2 2 2 Nin one binding (NOB1) Zn-ribbon like TFIIS_C PF01096.13 gi|284163842|ref|YP_003402121.1| - 0.0071 15.9 0.3 2.3 7.8 0.0 2.2 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) zf-IS66 PF13005.2 gi|284163842|ref|YP_003402121.1| - 0.026 14.4 3.7 0.11 12.5 2.8 1.7 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 Zn-ribbon_8 PF09723.5 gi|284163842|ref|YP_003402121.1| - 0.052 13.5 1.0 1.9 8.5 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain Elf1 PF05129.8 gi|284163842|ref|YP_003402121.1| - 0.16 11.6 1.2 0.29 10.8 0.9 1.5 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like RNHCP PF12647.2 gi|284163842|ref|YP_003402121.1| - 0.17 11.7 4.4 2.6 7.9 3.0 2.0 1 1 0 1 1 1 0 RNHCP domain zf-DNL PF05180.7 gi|284163842|ref|YP_003402121.1| - 0.37 10.5 2.7 3.1 7.5 0.5 2.3 1 1 2 3 3 3 0 DNL zinc finger HIT PF01230.18 gi|284163843|ref|YP_003402122.1| - 8.1e-11 42.3 0.0 1.4e-10 41.5 0.0 1.4 1 0 0 1 1 1 1 HIT domain CwfJ_C_1 PF04677.10 gi|284163843|ref|YP_003402122.1| - 0.00048 19.7 0.0 0.00099 18.7 0.0 1.5 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 DcpS_C PF11969.3 gi|284163843|ref|YP_003402122.1| - 0.00075 19.7 0.0 0.0013 18.9 0.0 1.4 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding MS_channel PF00924.13 gi|284163844|ref|YP_003402123.1| - 1.9e-43 148.2 0.3 2.3e-43 147.9 0.2 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel DUF2062 PF09835.4 gi|284163844|ref|YP_003402123.1| - 0.079 12.5 2.5 0.23 11.0 1.0 2.0 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2062) Cupin_2 PF07883.6 gi|284163845|ref|YP_003402124.1| - 1.5e-14 53.2 1.1 2.2e-14 52.6 0.8 1.3 1 0 0 1 1 1 1 Cupin domain Cupin_7 PF12973.2 gi|284163845|ref|YP_003402124.1| - 1.7e-05 24.5 0.4 2.4e-05 24.1 0.3 1.3 1 1 0 1 1 1 1 ChrR Cupin-like domain Cupin_3 PF05899.7 gi|284163845|ref|YP_003402124.1| - 0.0031 16.8 0.2 0.0051 16.1 0.1 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF861) 3-HAO PF06052.7 gi|284163845|ref|YP_003402124.1| - 0.007 15.7 0.0 0.009 15.4 0.0 1.1 1 0 0 1 1 1 1 3-hydroxyanthranilic acid dioxygenase Cupin_1 PF00190.17 gi|284163845|ref|YP_003402124.1| - 0.053 12.9 0.0 0.068 12.5 0.0 1.1 1 0 0 1 1 1 0 Cupin Auxin_BP PF02041.11 gi|284163845|ref|YP_003402124.1| - 0.089 12.2 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Auxin binding protein GST_N_3 PF13417.1 gi|284163846|ref|YP_003402125.1| - 2.6e-14 53.1 0.0 2.9e-14 53.0 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.19 gi|284163846|ref|YP_003402125.1| - 6e-14 51.7 0.0 8.6e-14 51.2 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.1 gi|284163846|ref|YP_003402125.1| - 1.8e-08 34.2 0.0 2.1e-08 34.0 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.9 gi|284163846|ref|YP_003402125.1| - 0.0017 18.5 0.2 0.0021 18.2 0.1 1.3 1 1 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Rop PF01815.11 gi|284163846|ref|YP_003402125.1| - 0.073 12.5 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 Rop protein AhpC-TSA PF00578.16 gi|284163847|ref|YP_003402126.1| - 1.1e-11 44.5 0.0 1.3e-11 44.2 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|284163847|ref|YP_003402126.1| - 7.3e-05 22.3 0.0 0.00042 19.8 0.0 2.0 1 1 0 1 1 1 1 Redoxin HTH_20 PF12840.2 gi|284163848|ref|YP_003402127.1| - 2.5e-08 33.5 0.1 4.3e-08 32.8 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|284163848|ref|YP_003402127.1| - 0.00015 21.2 0.0 0.00024 20.6 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|284163848|ref|YP_003402127.1| - 0.0002 21.0 0.0 0.00028 20.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|284163848|ref|YP_003402127.1| - 0.0014 17.9 0.0 0.0024 17.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF742 PF05331.6 gi|284163848|ref|YP_003402127.1| - 0.0084 15.6 0.0 0.01 15.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF742) MarR_2 PF12802.2 gi|284163848|ref|YP_003402127.1| - 0.028 14.1 0.1 0.048 13.3 0.1 1.5 1 1 0 1 1 1 0 MarR family HTH_23 PF13384.1 gi|284163848|ref|YP_003402127.1| - 0.031 13.9 0.0 0.13 11.9 0.0 1.9 2 0 0 2 2 2 0 Homeodomain-like domain Rrf2 PF02082.15 gi|284163848|ref|YP_003402127.1| - 0.056 13.5 0.0 0.09 12.8 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_27 PF13463.1 gi|284163848|ref|YP_003402127.1| - 0.068 13.4 0.0 0.12 12.7 0.0 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain Radical_SAM PF04055.16 gi|284163849|ref|YP_003402128.1| - 3.2e-23 82.7 0.0 7.7e-23 81.4 0.0 1.7 1 0 0 1 1 1 1 Radical SAM superfamily UPF0004 PF00919.15 gi|284163849|ref|YP_003402128.1| - 2e-19 69.2 0.0 5.3e-19 67.8 0.0 1.7 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 T2SF PF00482.18 gi|284163851|ref|YP_003402130.1| - 0.042 13.7 0.0 0.061 13.2 0.0 1.3 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein F UPF0118 PF01594.11 gi|284163852|ref|YP_003402131.1| - 3.1e-50 171.0 27.9 3.6e-50 170.8 19.3 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF20 DUF948 PF06103.6 gi|284163852|ref|YP_003402131.1| - 0.25 11.2 2.9 1.5 8.7 2.1 2.3 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) DUF547 PF04784.9 gi|284163853|ref|YP_003402132.1| - 8.6e-20 70.7 0.0 1.2e-19 70.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF547 DUF1508 PF07411.7 gi|284163854|ref|YP_003402133.1| - 4e-17 61.3 0.1 6.2e-17 60.7 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1508) Orbi_VP6 PF01516.11 gi|284163854|ref|YP_003402133.1| - 0.0094 15.0 2.7 0.013 14.5 1.9 1.1 1 0 0 1 1 1 1 Orbivirus helicase VP6 NESP55 PF06390.7 gi|284163854|ref|YP_003402133.1| - 0.062 12.6 5.9 0.096 12.0 4.1 1.3 1 0 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) WXG100 PF06013.7 gi|284163855|ref|YP_003402134.1| - 0.3 11.1 3.9 0.55 10.2 0.1 2.9 3 1 0 3 3 3 0 Proteins of 100 residues with WXG TrkA_C PF02080.16 gi|284163856|ref|YP_003402135.1| - 7.5e-13 47.8 2.0 7.5e-13 47.8 1.4 2.0 2 0 0 2 2 2 1 TrkA-C domain HTH_24 PF13412.1 gi|284163856|ref|YP_003402135.1| - 3.4e-11 42.3 0.1 6.8e-11 41.3 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|284163856|ref|YP_003402135.1| - 4.3e-09 35.7 0.3 4.3e-09 35.7 0.2 2.0 3 0 0 3 3 2 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|284163856|ref|YP_003402135.1| - 7.6e-06 25.4 0.1 2.2e-05 23.9 0.0 1.8 2 0 0 2 2 2 1 HTH domain HTH_20 PF12840.2 gi|284163856|ref|YP_003402135.1| - 5.2e-05 22.9 0.0 0.00018 21.2 0.0 2.0 2 0 0 2 2 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|284163856|ref|YP_003402135.1| - 0.0011 18.5 0.0 0.0025 17.4 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|284163856|ref|YP_003402135.1| - 0.0027 17.3 0.0 0.0047 16.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_DeoR PF08220.7 gi|284163856|ref|YP_003402135.1| - 0.0069 15.9 0.3 0.02 14.4 0.0 2.0 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_28 PF13518.1 gi|284163856|ref|YP_003402135.1| - 0.01 15.8 0.2 0.058 13.4 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HrcA_DNA-bdg PF03444.10 gi|284163856|ref|YP_003402135.1| - 0.017 14.5 0.0 0.038 13.4 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_38 PF13936.1 gi|284163856|ref|YP_003402135.1| - 0.018 14.6 1.4 0.086 12.4 0.0 2.7 3 1 0 3 3 3 0 Helix-turn-helix domain Glyco_transf_21 PF13506.1 gi|284163856|ref|YP_003402135.1| - 0.065 12.5 0.2 0.13 11.5 0.0 1.6 2 0 0 2 2 2 0 Glycosyl transferase family 21 RuvB_C PF05491.8 gi|284163856|ref|YP_003402135.1| - 0.068 12.7 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB C-terminus MarR PF01047.17 gi|284163856|ref|YP_003402135.1| - 0.092 12.4 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_23 PF13384.1 gi|284163856|ref|YP_003402135.1| - 0.15 11.7 3.0 0.19 11.4 0.0 2.7 4 0 0 4 4 4 0 Homeodomain-like domain HTH_36 PF13730.1 gi|284163856|ref|YP_003402135.1| - 0.16 12.1 0.0 0.27 11.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Usp PF00582.21 gi|284163857|ref|YP_003402136.1| - 3.4e-16 59.6 0.8 4.3e-16 59.3 0.5 1.1 1 0 0 1 1 1 1 Universal stress protein family AA_permease_2 PF13520.1 gi|284163858|ref|YP_003402137.1| - 1.3e-45 155.6 37.4 1.8e-45 155.3 25.9 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|284163858|ref|YP_003402137.1| - 3.7e-41 140.9 35.1 4.7e-41 140.6 24.3 1.1 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.21 gi|284163858|ref|YP_003402137.1| - 3.8e-22 78.9 8.7 3.2e-11 43.5 0.8 2.6 2 0 0 2 2 2 2 Universal stress protein family AA_permease_C PF13906.1 gi|284163858|ref|YP_003402137.1| - 0.00095 18.9 2.5 0.003 17.3 1.7 2.0 1 0 0 1 1 1 1 C-terminus of AA_permease PNP_UDP_1 PF01048.15 gi|284163859|ref|YP_003402138.1| - 2.9e-47 160.6 3.5 3.5e-47 160.3 2.5 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DUF4434 PF14488.1 gi|284163859|ref|YP_003402138.1| - 0.17 11.6 0.0 0.32 10.6 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4434) PfkB PF00294.19 gi|284163861|ref|YP_003402140.1| - 5.9e-51 173.3 6.3 7.7e-51 173.0 4.3 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase DUF63 PF01889.12 gi|284163862|ref|YP_003402141.1| - 2.5e-19 70.4 9.3 4e-19 69.7 6.5 1.3 1 1 0 1 1 1 1 Membrane protein of unknown function DUF63 PLAC8 PF04749.12 gi|284163862|ref|YP_003402141.1| - 0.077 13.5 0.0 0.18 12.3 0.0 1.7 1 0 0 1 1 1 0 PLAC8 family IF-2B PF01008.12 gi|284163863|ref|YP_003402142.1| - 4.2e-74 249.0 0.2 4.9e-74 248.8 0.1 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family PEP-utilizers PF00391.18 gi|284163863|ref|YP_003402142.1| - 0.059 12.9 2.1 1.3 8.6 0.2 3.2 3 1 1 4 4 4 0 PEP-utilising enzyme, mobile domain DUF2849 PF11011.3 gi|284163863|ref|YP_003402142.1| - 0.72 10.1 9.4 7.2 6.9 0.0 3.7 3 1 0 3 3 3 0 Protein of unknown function (DUF2849) DeoC PF01791.4 gi|284163864|ref|YP_003402143.1| - 5.4e-36 124.0 3.1 6.1e-36 123.8 2.2 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase HPP PF04982.8 gi|284163865|ref|YP_003402144.1| - 3e-06 27.0 2.9 3e-06 27.0 2.0 1.8 2 0 0 2 2 2 1 HPP family Usp PF00582.21 gi|284163865|ref|YP_003402144.1| - 1.9e-05 24.8 1.2 8e-05 22.8 0.2 2.4 2 1 0 2 2 2 1 Universal stress protein family ATP-synt_C PF00137.16 gi|284163865|ref|YP_003402144.1| - 0.052 13.4 8.6 0.034 14.0 4.7 1.7 1 1 0 1 1 1 0 ATP synthase subunit C AzlD PF05437.7 gi|284163866|ref|YP_003402145.1| - 4.4e-14 52.2 7.3 5.1e-14 52.0 5.0 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport protein (AzlD) Cm_res_leader PF08077.6 gi|284163866|ref|YP_003402145.1| - 8.7 6.2 7.3 18 5.3 0.3 2.9 2 0 0 2 2 2 0 Chloramphenicol resistance gene leader peptide AzlC PF03591.9 gi|284163867|ref|YP_003402146.1| - 4.1e-40 137.0 14.2 4.1e-40 137.0 9.8 1.7 2 0 0 2 2 2 1 AzlC protein Acetyltransf_6 PF13480.1 gi|284163867|ref|YP_003402146.1| - 0.72 9.8 3.6 0.28 11.1 0.1 2.0 2 1 0 2 2 2 0 Acetyltransferase (GNAT) domain VMA21 PF09446.5 gi|284163867|ref|YP_003402146.1| - 5.2 7.0 7.3 3.3 7.7 0.1 2.8 2 1 1 3 3 3 0 VMA21-like domain HTH_20 PF12840.2 gi|284163868|ref|YP_003402147.1| - 9.8e-08 31.6 0.3 1.5e-07 31.0 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.1 gi|284163868|ref|YP_003402147.1| - 0.00059 19.8 0.1 0.0044 17.0 0.0 2.1 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|284163868|ref|YP_003402147.1| - 0.00071 19.1 0.0 0.0012 18.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.1 gi|284163868|ref|YP_003402147.1| - 0.096 12.5 0.0 0.14 11.9 0.0 1.4 1 1 0 1 1 1 0 Winged helix-turn-helix TrkA_N PF02254.13 gi|284163869|ref|YP_003402148.1| - 8.4e-28 96.7 0.4 1.4e-27 96.0 0.3 1.4 1 0 0 1 1 1 1 TrkA-N domain Ion_trans_2 PF07885.11 gi|284163869|ref|YP_003402148.1| - 3.8e-12 45.7 5.0 3.8e-12 45.7 3.5 2.4 3 0 0 3 3 3 1 Ion channel Ion_trans PF00520.26 gi|284163869|ref|YP_003402148.1| - 0.0003 20.0 0.7 0.00053 19.2 0.5 1.3 1 0 0 1 1 1 1 Ion transport protein PMT PF02366.13 gi|284163869|ref|YP_003402148.1| - 0.039 13.2 4.2 0.079 12.3 2.9 1.4 1 0 0 1 1 1 0 Dolichyl-phosphate-mannose-protein mannosyltransferase NAD_binding_7 PF13241.1 gi|284163869|ref|YP_003402148.1| - 0.06 13.5 0.1 0.13 12.5 0.0 1.5 1 1 0 1 1 1 0 Putative NAD(P)-binding Saccharop_dh PF03435.13 gi|284163869|ref|YP_003402148.1| - 0.12 11.2 0.1 0.34 9.8 0.0 1.6 1 1 1 2 2 2 0 Saccharopine dehydrogenase DUF983 PF06170.7 gi|284163869|ref|YP_003402148.1| - 5.5 7.1 5.8 0.91 9.6 0.1 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF983) TrkA_C PF02080.16 gi|284163870|ref|YP_003402149.1| - 3.9e-05 23.1 0.2 0.00017 21.0 0.0 2.3 2 0 0 2 2 2 1 TrkA-C domain YrhC PF14143.1 gi|284163870|ref|YP_003402149.1| - 0.094 12.6 0.2 0.19 11.6 0.1 1.5 1 0 0 1 1 1 0 YrhC-like protein 5TM-5TMR_LYT PF07694.7 gi|284163870|ref|YP_003402149.1| - 0.97 8.7 8.7 1.6 8.0 6.0 1.2 1 0 0 1 1 1 0 5TMR of 5TMR-LYT TrkA_C PF02080.16 gi|284163871|ref|YP_003402150.1| - 5.2e-07 29.1 0.1 1.6e-06 27.5 0.1 1.9 1 0 0 1 1 1 1 TrkA-C domain ThiS PF02597.15 gi|284163872|ref|YP_003402151.1| - 7.7e-17 61.5 0.6 8.7e-17 61.3 0.4 1.0 1 0 0 1 1 1 1 ThiS family Lambda_tail_I PF06805.7 gi|284163872|ref|YP_003402151.1| - 0.013 15.2 0.0 0.015 15.1 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage lambda tail assembly protein I Flagellin_IN PF07196.8 gi|284163872|ref|YP_003402151.1| - 0.11 12.4 0.7 2.1 8.4 0.1 2.1 2 0 0 2 2 2 0 Flagellin hook IN motif Acetyltransf_1 PF00583.19 gi|284163874|ref|YP_003402153.1| - 5e-11 42.4 0.6 1.3e-10 41.1 0.0 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|284163874|ref|YP_003402153.1| - 3.3e-07 30.4 1.9 9.9e-05 22.4 0.0 2.9 2 1 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|284163874|ref|YP_003402153.1| - 0.0017 18.2 0.1 0.033 14.0 0.0 2.7 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|284163874|ref|YP_003402153.1| - 0.0019 18.0 0.6 0.0074 16.1 0.0 2.1 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|284163874|ref|YP_003402153.1| - 0.0023 17.8 0.0 0.0055 16.5 0.0 1.6 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.1 gi|284163874|ref|YP_003402153.1| - 0.0057 16.6 0.0 0.036 14.0 0.0 2.1 2 1 1 3 3 3 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|284163874|ref|YP_003402153.1| - 0.011 15.3 0.0 0.021 14.4 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|284163874|ref|YP_003402153.1| - 0.019 14.9 6.6 0.027 14.4 0.3 2.7 2 1 0 3 3 3 0 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|284163874|ref|YP_003402153.1| - 0.078 13.1 1.4 0.33 11.1 0.0 2.4 2 1 0 2 2 2 0 Acetyltransferase (GNAT) domain Asparaginase PF00710.15 gi|284163876|ref|YP_003402155.1| - 3e-88 295.7 0.0 3.5e-88 295.4 0.0 1.0 1 0 0 1 1 1 1 Asparaginase DUF2065 PF09838.4 gi|284163877|ref|YP_003402156.1| - 0.045 13.4 4.4 0.22 11.2 0.1 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2065) TctB PF07331.6 gi|284163877|ref|YP_003402156.1| - 0.081 12.5 2.9 0.093 12.3 2.0 1.2 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family DUF2892 PF11127.3 gi|284163877|ref|YP_003402156.1| - 0.22 11.3 2.0 0.4 10.5 1.4 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2892) CbtB PF09489.5 gi|284163877|ref|YP_003402156.1| - 0.47 10.3 3.4 1.4 8.8 0.1 2.1 2 0 0 2 2 2 0 Probable cobalt transporter subunit (CbtB) YiaAB PF05360.9 gi|284163877|ref|YP_003402156.1| - 0.91 9.1 9.4 3.5 7.2 2.2 2.2 2 0 0 2 2 2 0 yiaA/B two helix domain Gram_pos_anchor PF00746.16 gi|284163877|ref|YP_003402156.1| - 2.8 7.8 15.6 1.1 9.2 1.1 2.2 2 0 0 2 2 2 0 Gram positive anchor VPEP PF07589.6 gi|284163878|ref|YP_003402157.1| - 4.5 7.3 13.3 0.5 10.3 0.6 2.7 2 1 0 2 2 2 0 PEP-CTERM motif LEA_6 PF10714.4 gi|284163879|ref|YP_003402158.1| - 0.054 13.2 2.9 0.1 12.4 2.0 1.4 1 0 0 1 1 1 0 Late embryogenesis abundant protein 18 DUF2232 PF09991.4 gi|284163879|ref|YP_003402158.1| - 3.8 6.4 9.7 2.2 7.1 5.1 1.7 1 1 0 1 1 1 0 Predicted membrane protein (DUF2232) HTH_5 PF01022.15 gi|284163880|ref|YP_003402159.1| - 3.1e-19 68.3 0.1 2.4e-16 59.1 0.1 2.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|284163880|ref|YP_003402159.1| - 1.1e-16 60.3 0.9 5.3e-13 48.5 0.2 2.6 2 0 0 2 2 2 2 Helix-turn-helix domain TrmB PF01978.14 gi|284163880|ref|YP_003402159.1| - 8.8e-14 50.9 0.2 9.2e-06 25.2 0.0 2.3 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|284163880|ref|YP_003402159.1| - 2.2e-13 49.6 2.0 3.8e-09 36.0 0.2 2.4 2 0 0 2 2 2 2 MarR family HTH_24 PF13412.1 gi|284163880|ref|YP_003402159.1| - 1.2e-12 47.0 0.1 9.4e-10 37.7 0.0 2.5 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|284163880|ref|YP_003402159.1| - 4.2e-08 33.3 0.2 1.7e-06 28.2 0.0 2.5 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR PF01047.17 gi|284163880|ref|YP_003402159.1| - 5.4e-08 32.4 0.1 2.3e-06 27.1 0.0 2.4 2 0 0 2 2 2 1 MarR family Rrf2 PF02082.15 gi|284163880|ref|YP_003402159.1| - 2.3e-07 30.8 0.0 0.0036 17.3 0.0 2.4 2 0 0 2 2 2 2 Transcriptional regulator HTH_Crp_2 PF13545.1 gi|284163880|ref|YP_003402159.1| - 5e-07 29.4 0.0 5.4e-05 22.8 0.0 2.8 3 0 0 3 3 3 1 Crp-like helix-turn-helix domain HTH_11 PF08279.7 gi|284163880|ref|YP_003402159.1| - 3.9e-06 26.4 0.0 9.4e-06 25.1 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.5 gi|284163880|ref|YP_003402159.1| - 6.6e-06 25.6 1.4 0.032 13.8 0.1 3.1 3 1 0 3 3 2 2 IclR helix-turn-helix domain HTH_CodY PF08222.6 gi|284163880|ref|YP_003402159.1| - 2.5e-05 23.5 0.0 5.2e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 CodY helix-turn-helix domain DUF742 PF05331.6 gi|284163880|ref|YP_003402159.1| - 4.9e-05 22.8 0.0 0.079 12.5 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF742) Fe_dep_repress PF01325.14 gi|284163880|ref|YP_003402159.1| - 0.00035 20.4 0.0 0.00084 19.2 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain FeoC PF09012.5 gi|284163880|ref|YP_003402159.1| - 0.00037 20.1 0.1 0.67 9.6 0.0 2.9 3 0 0 3 3 3 1 FeoC like transcriptional regulator Sulfolobus_pRN PF05584.6 gi|284163880|ref|YP_003402159.1| - 0.00045 20.1 0.0 0.91 9.5 0.0 2.3 2 0 0 2 2 2 2 Sulfolobus plasmid regulatory protein PadR PF03551.9 gi|284163880|ref|YP_003402159.1| - 0.00052 19.7 0.6 0.0035 17.0 0.0 2.7 3 1 0 3 3 1 1 Transcriptional regulator PadR-like family DUF2250 PF10007.4 gi|284163880|ref|YP_003402159.1| - 0.00076 19.3 0.0 0.11 12.4 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) HxlR PF01638.12 gi|284163880|ref|YP_003402159.1| - 0.00083 18.9 0.0 0.025 14.2 0.0 2.3 2 0 0 2 2 2 1 HxlR-like helix-turn-helix HTH_23 PF13384.1 gi|284163880|ref|YP_003402159.1| - 0.0009 18.8 0.1 0.0024 17.4 0.1 1.7 1 0 0 1 1 1 1 Homeodomain-like domain LexA_DNA_bind PF01726.11 gi|284163880|ref|YP_003402159.1| - 0.00099 18.6 0.0 0.0074 15.8 0.0 2.3 2 0 0 2 2 2 1 LexA DNA binding domain HTH_45 PF14947.1 gi|284163880|ref|YP_003402159.1| - 0.0016 18.2 0.0 1.2 9.0 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix GntR PF00392.16 gi|284163880|ref|YP_003402159.1| - 0.0018 17.6 0.2 0.17 11.3 0.0 2.8 2 1 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_10 PF04967.7 gi|284163880|ref|YP_003402159.1| - 0.0019 17.7 0.0 0.0061 16.1 0.0 1.9 2 0 0 2 2 1 1 HTH DNA binding domain DDRGK PF09756.4 gi|284163880|ref|YP_003402159.1| - 0.0038 16.6 0.0 0.0068 15.8 0.0 1.4 1 0 0 1 1 1 1 DDRGK domain GPP34 PF05719.6 gi|284163880|ref|YP_003402159.1| - 0.006 16.6 0.4 0.014 15.4 0.1 1.7 1 1 1 2 2 2 1 Golgi phosphoprotein 3 (GPP34) DUF2513 PF10711.4 gi|284163880|ref|YP_003402159.1| - 0.0075 16.3 0.3 0.021 14.9 0.0 1.8 3 0 0 3 3 1 1 Hypothetical protein (DUF2513) HTH_36 PF13730.1 gi|284163880|ref|YP_003402159.1| - 0.012 15.7 0.0 0.024 14.7 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HemN_C PF06969.11 gi|284163880|ref|YP_003402159.1| - 0.013 15.5 0.8 6.1 6.9 0.0 3.0 3 0 0 3 3 3 0 HemN C-terminal domain HTH_AsnC-type PF13404.1 gi|284163880|ref|YP_003402159.1| - 0.014 14.8 0.2 0.21 11.1 0.1 2.9 3 1 0 3 3 2 0 AsnC-type helix-turn-helix domain ArsR PF09824.4 gi|284163880|ref|YP_003402159.1| - 0.019 14.2 0.0 0.056 12.7 0.0 1.7 1 0 0 1 1 1 0 ArsR transcriptional regulator HTH_34 PF13601.1 gi|284163880|ref|YP_003402159.1| - 0.02 14.9 0.0 0.055 13.4 0.0 1.7 2 0 0 2 2 1 0 Winged helix DNA-binding domain EAP30 PF04157.11 gi|284163880|ref|YP_003402159.1| - 0.023 13.8 0.1 11 5.1 0.0 2.8 2 1 0 2 2 2 0 EAP30/Vps36 family DUF387 PF04079.11 gi|284163880|ref|YP_003402159.1| - 0.04 13.2 0.1 1.6 8.0 0.0 2.3 2 0 0 2 2 2 0 Putative transcriptional regulators (Ypuh-like) FaeA PF04703.7 gi|284163880|ref|YP_003402159.1| - 0.054 13.6 0.1 0.14 12.3 0.0 1.7 2 0 0 2 2 1 0 FaeA-like protein HTH_DeoR PF08220.7 gi|284163880|ref|YP_003402159.1| - 0.055 13.0 0.0 0.17 11.4 0.0 1.8 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain B-block_TFIIIC PF04182.7 gi|284163880|ref|YP_003402159.1| - 0.06 13.2 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC DUF4423 PF14394.1 gi|284163880|ref|YP_003402159.1| - 0.062 12.8 0.2 4.6 6.7 0.0 2.4 3 0 0 3 3 2 0 Domain of unknown function (DUF4423) HTH_28 PF13518.1 gi|284163880|ref|YP_003402159.1| - 0.066 13.2 0.3 0.19 11.7 0.2 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain IF2_N PF04760.10 gi|284163880|ref|YP_003402159.1| - 0.082 12.5 0.0 0.64 9.7 0.0 2.2 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region MerR PF00376.18 gi|284163880|ref|YP_003402159.1| - 0.13 11.8 0.1 1.3 8.6 0.1 2.7 2 1 0 2 2 1 0 MerR family regulatory protein RPA_C PF08784.6 gi|284163880|ref|YP_003402159.1| - 0.16 12.4 0.0 5.1 7.5 0.0 2.2 2 0 0 2 2 2 0 Replication protein A C terminal HTH_1 PF00126.22 gi|284163880|ref|YP_003402159.1| - 0.29 10.9 1.4 3.6 7.3 0.0 2.6 3 0 0 3 3 2 0 Bacterial regulatory helix-turn-helix protein, lysR family BLOC1_2 PF10046.4 gi|284163881|ref|YP_003402160.1| - 0.13 12.4 1.7 10 6.3 0.0 2.3 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 HXXSHH PF07586.6 gi|284163881|ref|YP_003402160.1| - 0.14 11.1 1.4 0.18 10.6 1.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1552) Snapin_Pallidin PF14712.1 gi|284163881|ref|YP_003402160.1| - 0.17 12.2 1.5 0.29 11.4 1.1 1.3 1 0 0 1 1 1 0 Snapin/Pallidin bZIP_1 PF00170.16 gi|284163881|ref|YP_003402160.1| - 0.17 11.8 4.5 0.17 11.8 1.2 2.2 2 1 1 3 3 3 0 bZIP transcription factor Atg14 PF10186.4 gi|284163881|ref|YP_003402160.1| - 0.39 9.6 3.7 0.51 9.2 2.6 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DUF1515 PF07439.6 gi|284163881|ref|YP_003402160.1| - 0.4 10.5 7.6 0.9 9.3 1.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1515) Adeno_PIX PF03955.9 gi|284163881|ref|YP_003402160.1| - 0.51 10.8 2.7 0.66 10.5 1.1 1.7 1 1 1 2 2 2 0 Adenovirus hexon-associated protein (IX) Fmp27_WPPW PF10359.4 gi|284163881|ref|YP_003402160.1| - 0.53 8.6 4.2 0.7 8.2 2.9 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain HAUS6_N PF14661.1 gi|284163881|ref|YP_003402160.1| - 0.73 9.1 4.9 0.99 8.7 3.4 1.2 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus APG6 PF04111.7 gi|284163881|ref|YP_003402160.1| - 3.4 6.6 8.4 4.3 6.2 5.8 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 DivIC PF04977.10 gi|284163881|ref|YP_003402160.1| - 7 6.2 6.8 4.3 6.9 2.0 2.2 1 1 1 2 2 2 0 Septum formation initiator bZIP_2 PF07716.10 gi|284163883|ref|YP_003402162.1| - 3.1e-06 26.8 9.1 0.01 15.6 0.8 2.5 2 0 0 2 2 2 2 Basic region leucine zipper MscS_porin PF12795.2 gi|284163883|ref|YP_003402162.1| - 0.00068 19.0 1.3 0.001 18.4 0.9 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel porin domain IncA PF04156.9 gi|284163883|ref|YP_003402162.1| - 0.00093 18.8 7.4 0.0016 18.0 5.2 1.3 1 0 0 1 1 1 1 IncA protein DUF3450 PF11932.3 gi|284163883|ref|YP_003402162.1| - 0.0028 16.9 1.5 0.0046 16.2 1.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3450) ADIP PF11559.3 gi|284163883|ref|YP_003402162.1| - 0.0064 16.4 4.9 0.011 15.6 3.4 1.3 1 0 0 1 1 1 1 Afadin- and alpha -actinin-Binding NYD-SP28_assoc PF14775.1 gi|284163883|ref|YP_003402162.1| - 0.0094 15.6 2.1 0.025 14.2 1.0 2.1 2 0 0 2 2 1 1 Sperm tail C-terminal domain Mnd1 PF03962.10 gi|284163883|ref|YP_003402162.1| - 0.012 15.3 6.7 0.018 14.6 4.6 1.2 1 0 0 1 1 1 0 Mnd1 family ERM PF00769.14 gi|284163883|ref|YP_003402162.1| - 0.013 15.0 7.1 0.019 14.5 4.9 1.2 1 0 0 1 1 1 0 Ezrin/radixin/moesin family GAS PF13851.1 gi|284163883|ref|YP_003402162.1| - 0.016 14.4 1.3 0.023 13.8 0.9 1.2 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Tropomyosin_1 PF12718.2 gi|284163883|ref|YP_003402162.1| - 0.021 14.6 9.0 0.021 14.6 6.2 1.6 2 0 0 2 2 1 0 Tropomyosin like DUF904 PF06005.7 gi|284163883|ref|YP_003402162.1| - 0.022 15.0 8.7 0.87 9.9 0.2 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF904) Fmp27_WPPW PF10359.4 gi|284163883|ref|YP_003402162.1| - 0.024 13.0 3.1 0.034 12.5 2.1 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Tropomyosin PF00261.15 gi|284163883|ref|YP_003402162.1| - 0.03 13.4 9.9 0.057 12.5 6.8 1.4 1 0 0 1 1 1 0 Tropomyosin ATG16 PF08614.6 gi|284163883|ref|YP_003402162.1| - 0.033 14.0 5.8 0.057 13.2 4.0 1.3 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) eRF1_2 PF03464.10 gi|284163883|ref|YP_003402162.1| - 0.04 14.2 0.0 0.071 13.4 0.0 1.4 1 0 0 1 1 1 0 eRF1 domain 2 HemX PF04375.9 gi|284163883|ref|YP_003402162.1| - 0.044 12.3 2.9 0.065 11.8 2.0 1.2 1 0 0 1 1 1 0 HemX Laminin_II PF06009.7 gi|284163883|ref|YP_003402162.1| - 0.05 13.3 0.6 0.09 12.5 0.4 1.3 1 0 0 1 1 1 0 Laminin Domain II EzrA PF06160.7 gi|284163883|ref|YP_003402162.1| - 0.056 11.6 1.9 0.088 10.9 1.3 1.2 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA Syntaxin PF00804.20 gi|284163883|ref|YP_003402162.1| - 0.056 13.6 2.7 0.1 12.7 1.9 1.3 1 0 0 1 1 1 0 Syntaxin YlqD PF11068.3 gi|284163883|ref|YP_003402162.1| - 0.061 13.3 2.0 0.1 12.6 1.4 1.3 1 0 0 1 1 1 0 YlqD protein Transposase_24 PF03004.9 gi|284163883|ref|YP_003402162.1| - 0.089 12.6 0.3 0.16 11.8 0.2 1.4 1 0 0 1 1 1 0 Plant transposase (Ptta/En/Spm family) FlxA PF14282.1 gi|284163883|ref|YP_003402162.1| - 0.11 12.4 0.3 0.17 11.8 0.2 1.2 1 0 0 1 1 1 0 FlxA-like protein Cep57_MT_bd PF06657.8 gi|284163883|ref|YP_003402162.1| - 0.11 12.4 6.1 1.1 9.2 1.0 2.5 1 1 1 2 2 2 0 Centrosome microtubule-binding domain of Cep57 Ax_dynein_light PF10211.4 gi|284163883|ref|YP_003402162.1| - 0.12 12.1 5.2 0.22 11.3 3.6 1.3 1 0 0 1 1 1 0 Axonemal dynein light chain HSP70 PF00012.15 gi|284163883|ref|YP_003402162.1| - 0.14 10.0 1.9 3.8 5.3 0.0 2.0 2 0 0 2 2 2 0 Hsp70 protein TMF_DNA_bd PF12329.3 gi|284163883|ref|YP_003402162.1| - 0.14 11.9 9.2 0.64 9.8 6.4 1.9 1 1 0 1 1 1 0 TATA element modulatory factor 1 DNA binding DUF1515 PF07439.6 gi|284163883|ref|YP_003402162.1| - 0.2 11.4 2.2 0.6 9.9 1.5 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF1515) DUF4200 PF13863.1 gi|284163883|ref|YP_003402162.1| - 0.27 11.2 8.8 0.48 10.3 6.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4200) DUF342 PF03961.8 gi|284163883|ref|YP_003402162.1| - 0.27 9.5 1.8 0.38 9.1 1.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Atg14 PF10186.4 gi|284163883|ref|YP_003402162.1| - 0.29 10.0 4.2 0.45 9.4 2.9 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 bZIP_1 PF00170.16 gi|284163883|ref|YP_003402162.1| - 0.47 10.4 13.5 0.78 9.7 1.7 2.9 1 1 2 3 3 3 0 bZIP transcription factor MAD PF05557.8 gi|284163883|ref|YP_003402162.1| - 0.7 7.9 7.6 1.9 6.4 5.3 1.5 1 1 0 1 1 1 0 Mitotic checkpoint protein DUF1192 PF06698.6 gi|284163883|ref|YP_003402162.1| - 0.85 9.4 17.3 1 9.2 0.4 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF1192) Prefoldin_2 PF01920.15 gi|284163883|ref|YP_003402162.1| - 0.99 9.2 8.0 1.4 8.7 0.8 2.4 1 1 1 2 2 2 0 Prefoldin subunit APG6 PF04111.7 gi|284163883|ref|YP_003402162.1| - 1.1 8.2 4.9 1.6 7.7 3.4 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 DUF4140 PF13600.1 gi|284163883|ref|YP_003402162.1| - 1.3 9.4 11.7 6.4 7.2 3.3 2.6 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) DivIC PF04977.10 gi|284163883|ref|YP_003402162.1| - 1.4 8.4 10.7 4.3 6.8 1.4 2.5 1 1 1 2 2 2 0 Septum formation initiator TSC22 PF01166.13 gi|284163883|ref|YP_003402162.1| - 2.3 8.2 7.0 2.4 8.1 0.8 2.4 2 0 0 2 2 2 0 TSC-22/dip/bun family MtrG PF04210.8 gi|284163883|ref|YP_003402162.1| - 4.3 7.0 6.6 11 5.8 0.1 3.1 3 0 0 3 3 3 0 Tetrahydromethanopterin S-methyltransferase, subunit G Macoilin PF09726.4 gi|284163883|ref|YP_003402162.1| - 9.1 4.4 7.0 12 3.9 4.8 1.1 1 0 0 1 1 1 0 Transmembrane protein zf-FCS PF06467.9 gi|284163884|ref|YP_003402163.1| - 7.3e-05 22.3 0.5 0.00011 21.8 0.3 1.3 1 1 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif DUF329 PF03884.9 gi|284163884|ref|YP_003402163.1| - 0.0037 16.7 0.7 0.004 16.6 0.5 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF329) zf-HIT PF04438.11 gi|284163884|ref|YP_003402163.1| - 0.014 15.0 0.5 0.017 14.7 0.3 1.1 1 0 0 1 1 1 0 HIT zinc finger DUF1611 PF07755.6 gi|284163885|ref|YP_003402164.1| - 3.8e-105 350.8 0.1 4.4e-105 350.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1611) CbiA PF01656.18 gi|284163885|ref|YP_003402164.1| - 0.041 13.2 0.1 0.14 11.5 0.1 1.9 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain MR_MLE_C PF13378.1 gi|284163886|ref|YP_003402165.1| - 4.6e-20 71.6 0.2 1e-19 70.5 0.1 1.6 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|284163886|ref|YP_003402165.1| - 6.2e-18 65.0 0.6 2e-17 63.4 0.4 1.9 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_N PF02746.11 gi|284163886|ref|YP_003402165.1| - 7.2e-14 51.7 0.0 1.1e-13 51.2 0.0 1.3 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MAAL_C PF07476.6 gi|284163886|ref|YP_003402165.1| - 0.0014 17.6 0.0 0.003 16.5 0.0 1.5 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus HMGL-like PF00682.14 gi|284163886|ref|YP_003402165.1| - 0.064 12.8 0.0 0.25 10.9 0.0 1.8 2 0 0 2 2 2 0 HMGL-like TAT_signal PF10518.4 gi|284163887|ref|YP_003402166.1| - 0.033 14.1 5.7 0.064 13.2 3.9 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence TrmB PF01978.14 gi|284163888|ref|YP_003402167.1| - 0.00019 21.0 0.0 0.00048 19.7 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB LexA_DNA_bind PF01726.11 gi|284163888|ref|YP_003402167.1| - 0.0032 16.9 0.0 0.0054 16.2 0.0 1.4 1 0 0 1 1 1 1 LexA DNA binding domain MarR_2 PF12802.2 gi|284163888|ref|YP_003402167.1| - 0.0038 16.8 0.9 0.019 14.6 0.2 2.2 2 0 0 2 2 2 1 MarR family DUF308 PF03729.8 gi|284163888|ref|YP_003402167.1| - 0.012 15.5 1.6 0.012 15.5 1.1 1.8 2 0 0 2 2 2 0 Short repeat of unknown function (DUF308) FeoC PF09012.5 gi|284163888|ref|YP_003402167.1| - 0.046 13.4 0.0 0.078 12.6 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator DUF4423 PF14394.1 gi|284163888|ref|YP_003402167.1| - 0.1 12.1 0.0 0.15 11.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) NADHdh PF00146.16 gi|284163888|ref|YP_003402167.1| - 0.14 11.2 0.0 0.16 10.9 0.0 1.1 1 0 0 1 1 1 0 NADH dehydrogenase HTH_IclR PF09339.5 gi|284163888|ref|YP_003402167.1| - 0.44 10.1 3.4 0.3 10.7 0.3 2.3 3 0 0 3 3 3 0 IclR helix-turn-helix domain AAA_33 PF13671.1 gi|284163889|ref|YP_003402168.1| - 1.5e-12 47.5 0.5 4.4e-12 46.0 0.4 1.8 1 1 1 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|284163889|ref|YP_003402168.1| - 1.7e-09 38.0 0.2 4.7e-08 33.3 0.2 2.5 1 1 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|284163889|ref|YP_003402168.1| - 2.4e-08 33.5 0.0 2.4e-07 30.2 0.0 2.0 1 1 0 1 1 1 1 Chromatin associated protein KTI12 AAA_17 PF13207.1 gi|284163889|ref|YP_003402168.1| - 3.3e-08 34.3 0.0 5.2e-08 33.7 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|284163889|ref|YP_003402168.1| - 2.7e-06 27.5 0.0 3.8e-06 27.0 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|284163889|ref|YP_003402168.1| - 6e-06 26.3 0.0 8.2e-06 25.9 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain Zeta_toxin PF06414.7 gi|284163889|ref|YP_003402168.1| - 6.5e-06 25.3 0.1 8.1e-05 21.8 0.0 2.1 1 1 1 2 2 2 1 Zeta toxin CPT PF07931.7 gi|284163889|ref|YP_003402168.1| - 2e-05 24.2 0.2 0.016 14.7 0.1 2.2 1 1 1 2 2 2 2 Chloramphenicol phosphotransferase-like protein AAA PF00004.24 gi|284163889|ref|YP_003402168.1| - 6e-05 23.2 0.0 8.5e-05 22.7 0.0 1.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|284163889|ref|YP_003402168.1| - 0.00015 21.4 0.0 0.00032 20.3 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_14 PF13173.1 gi|284163889|ref|YP_003402168.1| - 0.00031 20.6 0.0 0.0005 19.9 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|284163889|ref|YP_003402168.1| - 0.0011 18.9 0.1 0.0023 17.9 0.0 1.7 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|284163889|ref|YP_003402168.1| - 0.0018 18.5 0.0 0.002 18.4 0.0 1.3 1 1 0 1 1 1 1 ABC transporter IstB_IS21 PF01695.12 gi|284163889|ref|YP_003402168.1| - 0.002 17.5 0.0 0.0076 15.6 0.0 1.9 2 1 1 3 3 2 1 IstB-like ATP binding protein AAA_5 PF07728.9 gi|284163889|ref|YP_003402168.1| - 0.0021 17.7 0.0 0.0044 16.7 0.0 1.6 2 0 0 2 2 1 1 AAA domain (dynein-related subfamily) APS_kinase PF01583.15 gi|284163889|ref|YP_003402168.1| - 0.0049 16.5 0.0 0.036 13.7 0.0 2.0 1 1 1 2 2 2 1 Adenylylsulphate kinase AAA_23 PF13476.1 gi|284163889|ref|YP_003402168.1| - 0.0057 17.0 0.0 0.012 15.9 0.0 1.3 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|284163889|ref|YP_003402168.1| - 0.0071 16.0 0.0 0.012 15.2 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|284163889|ref|YP_003402168.1| - 0.0095 15.5 0.0 0.015 14.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|284163889|ref|YP_003402168.1| - 0.011 15.8 0.0 0.017 15.3 0.0 1.3 1 0 0 1 1 1 0 RNA helicase DUF2075 PF09848.4 gi|284163889|ref|YP_003402168.1| - 0.013 14.4 0.0 0.045 12.7 0.0 1.7 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2075) PRK PF00485.13 gi|284163889|ref|YP_003402168.1| - 0.015 14.8 0.0 0.022 14.3 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family NTPase_1 PF03266.10 gi|284163889|ref|YP_003402168.1| - 0.016 14.9 0.0 0.04 13.6 0.0 1.6 2 0 0 2 2 2 0 NTPase cobW PF02492.14 gi|284163889|ref|YP_003402168.1| - 0.021 14.2 0.0 0.046 13.1 0.0 1.5 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain RuvB_N PF05496.7 gi|284163889|ref|YP_003402168.1| - 0.023 13.7 0.0 0.053 12.5 0.0 1.7 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus Mg_chelatase PF01078.16 gi|284163889|ref|YP_003402168.1| - 0.023 13.8 0.0 0.033 13.3 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI SRP54 PF00448.17 gi|284163889|ref|YP_003402168.1| - 0.035 13.5 0.0 0.046 13.1 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Thymidylate_kin PF02223.12 gi|284163889|ref|YP_003402168.1| - 0.038 13.3 0.0 0.072 12.4 0.0 1.5 1 0 0 1 1 1 0 Thymidylate kinase ATP_bind_1 PF03029.12 gi|284163889|ref|YP_003402168.1| - 0.043 13.3 0.0 0.072 12.6 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein DUF258 PF03193.11 gi|284163889|ref|YP_003402168.1| - 0.049 12.8 0.0 0.071 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_PrkA PF08298.6 gi|284163889|ref|YP_003402168.1| - 0.056 12.1 0.0 0.07 11.7 0.0 1.2 1 0 0 1 1 1 0 PrkA AAA domain ArgK PF03308.11 gi|284163889|ref|YP_003402168.1| - 0.06 12.1 0.0 0.082 11.6 0.0 1.2 1 0 0 1 1 1 0 ArgK protein AAA_21 PF13304.1 gi|284163889|ref|YP_003402168.1| - 0.062 13.2 0.0 0.07 13.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|284163889|ref|YP_003402168.1| - 0.07 12.7 0.0 0.1 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain ADK PF00406.17 gi|284163889|ref|YP_003402168.1| - 0.086 12.7 0.0 0.25 11.2 0.0 1.8 2 1 0 2 2 2 0 Adenylate kinase T2SE PF00437.15 gi|284163889|ref|YP_003402168.1| - 0.086 11.7 0.0 0.16 10.8 0.0 1.4 1 1 0 1 1 1 0 Type II/IV secretion system protein Peptidase_M15_2 PF05951.8 gi|284163889|ref|YP_003402168.1| - 0.11 11.9 0.0 0.14 11.5 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF882) Rad17 PF03215.10 gi|284163889|ref|YP_003402168.1| - 0.16 10.6 0.0 0.18 10.4 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein CarboxypepD_reg PF13620.1 gi|284163890|ref|YP_003402169.1| - 0.018 15.0 0.4 0.14 12.2 0.0 2.3 2 0 0 2 2 2 0 Carboxypeptidase regulatory-like domain NPP1 PF05630.6 gi|284163890|ref|YP_003402169.1| - 0.028 14.1 0.4 0.062 13.0 0.1 1.6 2 0 0 2 2 2 0 Necrosis inducing protein (NPP1) Sigma70_ner PF04546.8 gi|284163890|ref|YP_003402169.1| - 0.26 10.8 9.2 0.6 9.6 6.4 1.6 1 0 0 1 1 1 0 Sigma-70, non-essential region TAT_signal PF10518.4 gi|284163890|ref|YP_003402169.1| - 0.66 10.1 4.1 1.7 8.8 2.9 1.8 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Cupin_2 PF07883.6 gi|284163891|ref|YP_003402170.1| - 9e-11 41.1 0.1 1.3e-10 40.5 0.1 1.3 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.7 gi|284163891|ref|YP_003402170.1| - 0.0019 17.5 0.1 0.004 16.5 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF861) Pirin_C PF05726.8 gi|284163891|ref|YP_003402170.1| - 0.044 13.8 0.0 0.055 13.5 0.0 1.1 1 0 0 1 1 1 0 Pirin C-terminal cupin domain MannoseP_isomer PF01050.13 gi|284163891|ref|YP_003402170.1| - 0.074 12.6 0.0 0.088 12.4 0.0 1.1 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase Ectoine_synth PF06339.7 gi|284163891|ref|YP_003402170.1| - 0.1 12.5 0.0 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 Ectoine synthase YtxH PF12732.2 gi|284163894|ref|YP_003402173.1| - 0.025 14.9 0.0 0.13 12.6 0.0 2.3 1 1 1 2 2 2 0 YtxH-like protein DUF327 PF03885.8 gi|284163894|ref|YP_003402173.1| - 0.052 13.3 0.0 0.089 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF327) IncA PF04156.9 gi|284163896|ref|YP_003402175.1| - 1.1 8.7 13.9 1.6 8.3 2.3 2.9 3 0 0 3 3 3 0 IncA protein DUF3426 PF11906.3 gi|284163897|ref|YP_003402176.1| - 0.0033 17.0 0.0 0.0056 16.3 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF3426) DUF2393 PF09624.5 gi|284163897|ref|YP_003402176.1| - 0.015 14.8 0.0 0.028 13.9 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2393) Alpha_GJ PF03229.8 gi|284163897|ref|YP_003402176.1| - 0.021 15.1 0.5 0.028 14.7 0.3 1.2 1 0 0 1 1 1 0 Alphavirus glycoprotein J DUF3157 PF11355.3 gi|284163897|ref|YP_003402176.1| - 0.031 13.5 0.1 0.05 12.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3157) CBFNT PF08143.6 gi|284163897|ref|YP_003402176.1| - 0.2 12.7 1.3 0.44 11.6 0.9 1.5 1 0 0 1 1 1 0 CBFNT (NUC161) domain UCR_Fe-S_N PF10399.4 gi|284163897|ref|YP_003402176.1| - 0.33 10.1 1.6 0.64 9.2 1.1 1.5 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal PadR PF03551.9 gi|284163898|ref|YP_003402177.1| - 0.074 12.8 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family PspA_IM30 PF04012.7 gi|284163899|ref|YP_003402178.1| - 5.6e-35 120.7 32.3 5.6e-35 120.7 22.4 1.9 2 0 0 2 2 2 1 PspA/IM30 family Snf7 PF03357.16 gi|284163899|ref|YP_003402178.1| - 0.0012 18.2 59.8 0.026 13.8 26.2 3.7 1 1 1 2 2 2 1 Snf7 ERM PF00769.14 gi|284163899|ref|YP_003402178.1| - 0.0027 17.2 38.0 0.0027 17.2 26.3 2.0 1 1 1 2 2 2 1 Ezrin/radixin/moesin family Spc7 PF08317.6 gi|284163899|ref|YP_003402178.1| - 0.0027 16.4 21.6 0.0027 16.4 15.0 2.2 1 1 1 2 2 2 1 Spc7 kinetochore protein DUF972 PF06156.8 gi|284163899|ref|YP_003402178.1| - 0.032 14.5 29.4 0.68 10.3 3.4 3.6 1 1 2 3 3 3 0 Protein of unknown function (DUF972) CENP-F_leu_zip PF10473.4 gi|284163899|ref|YP_003402178.1| - 0.16 11.8 49.8 0.22 11.3 12.0 4.3 2 1 2 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 STAT_alpha PF01017.15 gi|284163899|ref|YP_003402178.1| - 0.18 11.4 25.2 0.09 12.4 0.6 3.6 3 1 1 4 4 4 0 STAT protein, all-alpha domain DUF2217 PF10265.4 gi|284163899|ref|YP_003402178.1| - 0.63 8.7 14.3 0.81 8.3 9.9 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2217) DUF3138 PF11336.3 gi|284163899|ref|YP_003402178.1| - 2.3 6.2 6.4 2.7 6.0 3.7 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3138) DUF3584 PF12128.3 gi|284163899|ref|YP_003402178.1| - 2.5 5.3 37.5 0.66 7.2 23.9 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3584) Dor1 PF04124.7 gi|284163899|ref|YP_003402178.1| - 3.6 5.9 17.5 1.1 7.6 7.0 2.2 1 1 1 2 2 2 0 Dor1-like family AAA_13 PF13166.1 gi|284163899|ref|YP_003402178.1| - 3.7 5.8 26.0 4.1 5.7 16.8 1.8 1 1 0 1 1 1 0 AAA domain Bestrophin PF01062.16 gi|284163899|ref|YP_003402178.1| - 4.6 6.1 6.3 8.7 5.1 4.4 1.4 1 1 0 1 1 1 0 Bestrophin, RFP-TM, chloride channel DUF948 PF06103.6 gi|284163899|ref|YP_003402178.1| - 5.1 7.0 16.0 7.1 6.5 3.4 3.6 3 1 1 4 4 3 0 Bacterial protein of unknown function (DUF948) IncA PF04156.9 gi|284163899|ref|YP_003402178.1| - 7 6.1 40.9 3.5 7.1 14.9 3.5 1 1 2 3 3 3 0 IncA protein DUF651 PF04895.7 gi|284163899|ref|YP_003402178.1| - 8.5 6.0 11.8 19 4.9 1.7 3.6 1 1 0 3 3 3 0 Archaeal protein of unknown function (DUF651) Not3 PF04065.10 gi|284163899|ref|YP_003402178.1| - 8.6 5.5 32.4 1.1 8.5 8.1 2.6 1 1 1 2 2 2 0 Not1 N-terminal domain, CCR4-Not complex component DUF342 PF03961.8 gi|284163899|ref|YP_003402178.1| - 8.8 4.6 25.2 19 3.5 8.4 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF342) Abhydrolase_5 PF12695.2 gi|284163900|ref|YP_003402179.1| - 7.9e-14 51.6 0.2 1.7e-13 50.5 0.1 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|284163900|ref|YP_003402179.1| - 1.2e-07 31.9 7.3 0.00028 20.8 2.6 2.2 1 1 1 2 2 2 2 Alpha/beta hydrolase family DLH PF01738.13 gi|284163900|ref|YP_003402179.1| - 3.4e-06 26.5 0.0 4.5e-06 26.1 0.0 1.1 1 0 0 1 1 1 1 Dienelactone hydrolase family Peptidase_S15 PF02129.13 gi|284163900|ref|YP_003402179.1| - 7e-05 22.3 0.0 8.8e-05 22.0 0.0 1.1 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) Thioesterase PF00975.15 gi|284163900|ref|YP_003402179.1| - 0.0024 18.1 0.2 0.39 10.9 0.3 2.3 1 1 1 2 2 2 1 Thioesterase domain Abhydrolase_3 PF07859.8 gi|284163900|ref|YP_003402179.1| - 0.012 15.2 0.3 0.023 14.2 0.2 1.4 1 1 0 1 1 1 0 alpha/beta hydrolase fold Lipase_3 PF01764.20 gi|284163900|ref|YP_003402179.1| - 0.049 13.2 0.0 0.072 12.7 0.0 1.3 1 0 0 1 1 1 0 Lipase (class 3) FRG PF08867.6 gi|284163901|ref|YP_003402180.1| - 1.4e-20 73.7 0.0 2.6e-20 72.8 0.0 1.4 1 0 0 1 1 1 1 FRG domain CAP PF00188.21 gi|284163902|ref|YP_003402181.1| - 3.8e-18 66.1 0.1 3.8e-18 66.1 0.1 1.9 2 0 0 2 2 2 1 Cysteine-rich secretory protein family SAPS PF04499.10 gi|284163902|ref|YP_003402181.1| - 1.4 7.4 6.9 1.9 7.0 4.8 1.3 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein DUF2201_N PF13203.1 gi|284163902|ref|YP_003402181.1| - 2 7.4 8.3 3.6 6.6 5.8 1.4 1 0 0 1 1 1 0 Putative metallopeptidase domain AAA_10 PF12846.2 gi|284163903|ref|YP_003402182.1| - 3.4e-20 72.6 0.0 2.1e-18 66.8 0.0 2.1 1 1 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|284163903|ref|YP_003402182.1| - 2.9e-08 33.8 0.0 5.4e-08 32.9 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF87 DUF853 PF05872.7 gi|284163903|ref|YP_003402182.1| - 8.9e-07 27.6 0.1 0.0015 16.9 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.13 gi|284163903|ref|YP_003402182.1| - 9.5e-05 21.9 0.0 0.011 15.2 0.0 2.4 2 0 0 2 2 2 1 FtsK/SpoIIIE family Zot PF05707.7 gi|284163903|ref|YP_003402182.1| - 0.0024 17.3 0.0 0.27 10.6 0.0 2.3 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) HAS-barrel PF09378.5 gi|284163903|ref|YP_003402182.1| - 0.0044 16.8 0.0 0.029 14.2 0.0 2.2 2 0 0 2 2 2 1 HAS barrel domain TrwB_AAD_bind PF10412.4 gi|284163903|ref|YP_003402182.1| - 0.0092 14.6 0.0 0.015 13.9 0.0 1.2 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain T2SE PF00437.15 gi|284163903|ref|YP_003402182.1| - 0.014 14.3 0.0 0.029 13.2 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_22 PF13401.1 gi|284163903|ref|YP_003402182.1| - 0.02 15.0 0.0 0.13 12.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|284163903|ref|YP_003402182.1| - 0.037 13.7 0.0 0.13 12.0 0.0 1.9 1 0 0 1 1 1 0 Part of AAA domain Zeta_toxin PF06414.7 gi|284163903|ref|YP_003402182.1| - 0.13 11.3 0.0 0.25 10.4 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin HTH_20 PF12840.2 gi|284163904|ref|YP_003402183.1| - 2.7e-07 30.2 13.0 2.8e-05 23.8 0.8 3.6 3 2 0 3 3 3 2 Helix-turn-helix domain HTH_IclR PF09339.5 gi|284163904|ref|YP_003402183.1| - 0.35 10.5 5.9 14 5.3 0.3 3.6 4 0 0 4 4 4 0 IclR helix-turn-helix domain BLUF PF04940.7 gi|284163905|ref|YP_003402184.1| - 0.028 14.1 0.1 0.053 13.2 0.1 1.5 1 0 0 1 1 1 0 Sensors of blue-light using FAD Cohesin PF00963.13 gi|284163906|ref|YP_003402185.1| - 1.3e-05 25.0 0.0 2.6e-05 24.0 0.0 1.5 1 1 0 1 1 1 1 Cohesin domain T2SM PF04612.7 gi|284163906|ref|YP_003402185.1| - 0.083 12.6 0.5 0.18 11.5 0.1 1.8 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein M 5_nucleotid_C PF02872.13 gi|284163907|ref|YP_003402186.1| - 2.7e-27 95.6 0.0 5.7e-27 94.6 0.0 1.5 1 0 0 1 1 1 1 5'-nucleotidase, C-terminal domain HAD_2 PF13419.1 gi|284163907|ref|YP_003402186.1| - 0.012 15.8 0.9 0.084 13.0 0.7 2.4 3 0 0 3 3 3 0 Haloacid dehalogenase-like hydrolase NurA PF09376.5 gi|284163908|ref|YP_003402187.1| - 1.7e-25 89.9 0.0 2.4e-25 89.4 0.0 1.1 1 0 0 1 1 1 1 NurA domain TF_Zn_Ribbon PF08271.7 gi|284163909|ref|YP_003402188.1| - 0.00089 18.5 0.5 0.36 10.1 0.0 2.4 2 0 0 2 2 2 2 TFIIB zinc-binding A2L_zn_ribbon PF08792.5 gi|284163909|ref|YP_003402188.1| - 0.0013 18.1 1.3 0.88 9.1 0.1 2.2 2 0 0 2 2 2 2 A2L zinc ribbon domain zf-C2H2_6 PF13912.1 gi|284163909|ref|YP_003402188.1| - 0.0039 17.0 2.5 0.84 9.6 0.1 2.4 2 0 0 2 2 2 2 C2H2-type zinc finger zf-C2H2 PF00096.21 gi|284163909|ref|YP_003402188.1| - 0.0067 16.7 1.3 2.5 8.6 0.2 2.2 2 0 0 2 2 2 2 Zinc finger, C2H2 type ADK_lid PF05191.9 gi|284163909|ref|YP_003402188.1| - 0.0085 15.7 4.1 0.027 14.1 2.8 1.8 1 1 0 1 1 1 1 Adenylate kinase, active site lid Lar_restr_allev PF14354.1 gi|284163909|ref|YP_003402188.1| - 0.01 16.1 1.9 0.63 10.3 0.0 2.2 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-C2H2_4 PF13894.1 gi|284163909|ref|YP_003402188.1| - 0.011 15.9 0.2 7.9 7.0 0.0 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger Zn-ribbon_8 PF09723.5 gi|284163909|ref|YP_003402188.1| - 0.02 14.8 1.3 0.04 13.8 0.9 1.5 1 1 0 1 1 1 0 Zinc ribbon domain DUF3039 PF11238.3 gi|284163909|ref|YP_003402188.1| - 0.027 13.9 0.2 0.037 13.4 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3039) OrfB_Zn_ribbon PF07282.6 gi|284163909|ref|YP_003402188.1| - 0.04 13.5 1.3 0.06 13.0 0.9 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn_ribbon_recom PF13408.1 gi|284163909|ref|YP_003402188.1| - 0.043 14.0 1.4 8.1 6.7 0.3 2.2 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain Prok-RING_1 PF14446.1 gi|284163909|ref|YP_003402188.1| - 0.066 12.9 2.4 0.64 9.7 1.7 2.0 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 Crust_neurohorm PF01147.12 gi|284163909|ref|YP_003402188.1| - 0.069 12.4 0.3 1.2 8.4 0.0 2.1 2 0 0 2 2 2 0 Crustacean CHH/MIH/GIH neurohormone family DZR PF12773.2 gi|284163909|ref|YP_003402188.1| - 0.072 12.9 1.2 0.12 12.1 0.9 1.5 1 1 0 1 1 1 0 Double zinc ribbon zf-CGNR PF11706.3 gi|284163909|ref|YP_003402188.1| - 0.074 12.5 1.5 0.12 11.9 1.0 1.4 1 0 0 1 1 1 0 CGNR zinc finger zinc_ribbon_5 PF13719.1 gi|284163909|ref|YP_003402188.1| - 0.1 12.1 0.7 1 8.9 0.4 2.1 1 1 1 2 2 2 0 zinc-ribbon domain GATA PF00320.22 gi|284163909|ref|YP_003402188.1| - 0.11 11.8 1.5 3.6 7.0 0.4 2.7 2 1 1 3 3 3 0 GATA zinc finger Nudix_N_2 PF14803.1 gi|284163909|ref|YP_003402188.1| - 0.14 11.9 0.6 5.9 6.6 0.0 2.3 2 0 0 2 2 2 0 Nudix N-terminal zf-trcl PF13451.1 gi|284163909|ref|YP_003402188.1| - 0.17 11.5 2.3 11 5.7 0.1 2.3 2 0 0 2 2 2 0 Probable zinc-binding domain XPA_N PF01286.13 gi|284163909|ref|YP_003402188.1| - 0.25 11.0 1.9 9.3 6.0 0.2 2.4 2 0 0 2 2 2 0 XPA protein N-terminal RRN7 PF11781.3 gi|284163909|ref|YP_003402188.1| - 0.3 10.6 2.6 11 5.6 0.1 2.3 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-ribbon_3 PF13248.1 gi|284163909|ref|YP_003402188.1| - 0.35 10.1 2.7 0.75 9.0 1.9 1.6 1 1 0 1 1 1 0 zinc-ribbon domain zf-LYAR PF08790.6 gi|284163909|ref|YP_003402188.1| - 0.54 10.0 4.2 8.5 6.1 0.3 2.2 2 0 0 2 2 2 0 LYAR-type C2HC zinc finger DUF393 PF04134.7 gi|284163912|ref|YP_003402191.1| - 9.6e-31 107.2 0.1 1.1e-30 107.0 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function, DUF393 iPGM_N PF06415.8 gi|284163914|ref|YP_003402193.1| - 1.3e-77 260.1 0.3 1.7e-77 259.7 0.2 1.2 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Metalloenzyme PF01676.13 gi|284163914|ref|YP_003402193.1| - 6.2e-76 255.1 0.5 7.1e-76 254.9 0.3 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|284163914|ref|YP_003402193.1| - 2.7e-10 40.1 3.0 1.7e-09 37.4 0.4 2.7 2 1 1 3 3 3 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.18 gi|284163914|ref|YP_003402193.1| - 6.8e-06 25.4 0.2 5.5e-05 22.4 0.1 2.5 2 1 0 2 2 2 1 Sulfatase PglZ PF08665.7 gi|284163914|ref|YP_003402193.1| - 0.0018 17.9 0.2 0.0046 16.6 0.2 1.6 1 0 0 1 1 1 1 PglZ domain Glyco_transf_21 PF13506.1 gi|284163914|ref|YP_003402193.1| - 0.071 12.3 0.1 2.1 7.6 0.0 2.4 1 1 1 2 2 2 0 Glycosyl transferase family 21 Flavodoxin_2 PF02525.12 gi|284163915|ref|YP_003402194.1| - 1.5e-37 129.0 0.0 2.2e-37 128.4 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold UbiA PF01040.13 gi|284163915|ref|YP_003402194.1| - 2.3e-21 76.2 23.9 3.2e-21 75.7 16.6 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family FMN_red PF03358.10 gi|284163915|ref|YP_003402194.1| - 1.3e-15 57.2 0.0 2.9e-15 56.0 0.0 1.6 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_4 PF12682.2 gi|284163915|ref|YP_003402194.1| - 0.00015 21.1 0.0 0.00027 20.3 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin DUF839 PF05787.8 gi|284163917|ref|YP_003402196.1| - 3.8e-24 85.5 2.0 1.8e-19 70.0 0.3 3.7 2 1 1 3 3 3 2 Bacterial protein of unknown function (DUF839) EF-hand_7 PF13499.1 gi|284163917|ref|YP_003402196.1| - 0.00043 20.3 2.3 0.0026 17.8 1.3 2.5 2 0 0 2 2 2 1 EF-hand domain pair EF-hand_1 PF00036.27 gi|284163917|ref|YP_003402196.1| - 0.014 14.6 6.1 0.98 8.8 0.3 3.5 3 0 0 3 3 3 0 EF hand EF-hand_6 PF13405.1 gi|284163917|ref|YP_003402196.1| - 0.13 12.1 4.4 1.7 8.7 0.2 3.3 2 0 0 2 2 2 0 EF-hand domain TAT_signal PF10518.4 gi|284163917|ref|YP_003402196.1| - 0.74 9.9 5.7 1.5 8.9 3.9 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF839 PF05787.8 gi|284163918|ref|YP_003402197.1| - 1.7e-23 83.4 0.9 2.5e-20 72.9 0.2 3.6 2 1 1 3 3 3 2 Bacterial protein of unknown function (DUF839) EF-hand_7 PF13499.1 gi|284163918|ref|YP_003402197.1| - 0.00045 20.2 2.5 0.0022 18.0 1.8 2.3 1 0 0 1 1 1 1 EF-hand domain pair EF-hand_1 PF00036.27 gi|284163918|ref|YP_003402197.1| - 0.017 14.4 6.5 1 8.8 0.4 3.5 3 0 0 3 3 3 0 EF hand TAT_signal PF10518.4 gi|284163918|ref|YP_003402197.1| - 0.42 10.7 4.4 1.1 9.4 3.1 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence EF-hand_6 PF13405.1 gi|284163918|ref|YP_003402197.1| - 3.2 7.8 9.3 1.5 8.9 0.3 3.4 3 0 0 3 3 3 0 EF-hand domain RskA PF10099.4 gi|284163919|ref|YP_003402198.1| - 0.00014 21.6 1.3 0.0049 16.6 1.0 2.5 2 0 0 2 2 2 1 Anti-sigma-K factor rskA CENP-B_dimeris PF09026.5 gi|284163919|ref|YP_003402198.1| - 0.0019 18.3 2.4 0.0039 17.4 1.7 1.5 1 0 0 1 1 1 1 Centromere protein B dimerisation domain Cys_Met_Meta_PP PF01053.15 gi|284163920|ref|YP_003402199.1| - 4.1e-135 449.9 0.0 5.2e-135 449.6 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.16 gi|284163920|ref|YP_003402199.1| - 2.2e-08 33.4 0.0 3.2e-08 32.9 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|284163920|ref|YP_003402199.1| - 4.3e-08 32.5 0.5 1e-06 28.0 0.2 2.1 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|284163920|ref|YP_003402199.1| - 0.0016 17.6 0.0 0.0029 16.7 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|284163920|ref|YP_003402199.1| - 0.008 14.9 0.5 0.016 13.9 0.0 1.7 3 0 0 3 3 3 1 Aminotransferase class-V SLA_LP_auto_ag PF05889.8 gi|284163920|ref|YP_003402199.1| - 0.062 11.7 0.0 0.1 11.0 0.0 1.2 1 0 0 1 1 1 0 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) AsnC_trans_reg PF01037.16 gi|284163924|ref|YP_003402203.1| - 6.1e-14 51.4 0.1 6.7e-14 51.3 0.1 1.0 1 0 0 1 1 1 1 AsnC family TrkA_N PF02254.13 gi|284163925|ref|YP_003402204.1| - 1.6e-26 92.5 0.2 2.7e-26 91.8 0.1 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|284163925|ref|YP_003402204.1| - 4e-11 42.3 0.1 4e-11 42.3 0.1 1.7 2 0 0 2 2 1 1 TrkA-C domain UDPG_MGDP_dh_N PF03721.9 gi|284163925|ref|YP_003402204.1| - 2.8e-07 30.1 0.0 5.3e-07 29.1 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_10 PF13460.1 gi|284163925|ref|YP_003402204.1| - 3.6e-06 27.1 0.7 6e-06 26.3 0.1 1.6 2 0 0 2 2 2 1 NADH(P)-binding Pyr_redox PF00070.22 gi|284163925|ref|YP_003402204.1| - 1.4e-05 25.4 0.1 2.7e-05 24.4 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|284163925|ref|YP_003402204.1| - 1.4e-05 25.0 0.1 0.00027 20.8 0.1 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|284163925|ref|YP_003402204.1| - 1.6e-05 24.1 0.0 2.2e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain NAD_binding_7 PF13241.1 gi|284163925|ref|YP_003402204.1| - 3.7e-05 23.9 0.0 6.3e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding ApbA PF02558.11 gi|284163925|ref|YP_003402204.1| - 7.8e-05 22.1 0.0 0.00015 21.2 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.13 gi|284163925|ref|YP_003402204.1| - 8e-05 22.3 0.0 0.00014 21.5 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DAO PF01266.19 gi|284163925|ref|YP_003402204.1| - 0.00013 21.0 0.1 0.00022 20.2 0.1 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.16 gi|284163925|ref|YP_003402204.1| - 0.00025 20.6 0.0 0.00041 19.9 0.0 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain XdhC_C PF13478.1 gi|284163925|ref|YP_003402204.1| - 0.00065 20.0 0.0 0.0012 19.1 0.0 1.4 1 0 0 1 1 1 1 XdhC Rossmann domain NAD_binding_8 PF13450.1 gi|284163925|ref|YP_003402204.1| - 0.001 19.0 0.0 0.0021 18.0 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain NAD_Gly3P_dh_N PF01210.18 gi|284163925|ref|YP_003402204.1| - 0.0013 18.4 0.0 0.0023 17.6 0.0 1.4 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.10 gi|284163925|ref|YP_003402204.1| - 0.0027 17.5 0.0 0.009 15.8 0.0 1.9 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase FAD_binding_2 PF00890.19 gi|284163925|ref|YP_003402204.1| - 0.0037 16.1 0.1 0.2 10.4 0.0 2.1 2 0 0 2 2 2 1 FAD binding domain IlvN PF07991.7 gi|284163925|ref|YP_003402204.1| - 0.0055 16.0 0.0 0.01 15.1 0.0 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.14 gi|284163925|ref|YP_003402204.1| - 0.0057 15.8 0.0 0.044 12.9 0.0 2.0 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|284163925|ref|YP_003402204.1| - 0.0059 15.6 0.1 0.008 15.1 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase Shikimate_DH PF01488.15 gi|284163925|ref|YP_003402204.1| - 0.014 15.4 0.1 0.031 14.3 0.0 1.6 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|284163925|ref|YP_003402204.1| - 0.015 15.6 0.1 0.04 14.3 0.0 1.8 2 0 0 2 2 1 0 NADP oxidoreductase coenzyme F420-dependent CPSase_L_chain PF00289.17 gi|284163925|ref|YP_003402204.1| - 0.019 15.0 0.0 0.044 13.8 0.0 1.6 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain Thi4 PF01946.12 gi|284163925|ref|YP_003402204.1| - 0.028 13.5 0.0 0.042 12.9 0.0 1.4 1 0 0 1 1 1 0 Thi4 family HI0933_like PF03486.9 gi|284163925|ref|YP_003402204.1| - 0.04 12.3 0.0 0.057 11.8 0.0 1.2 1 0 0 1 1 1 0 HI0933-like protein Pyr_redox_3 PF13738.1 gi|284163925|ref|YP_003402204.1| - 0.045 13.8 0.0 0.11 12.5 0.0 1.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Methyltransf_18 PF12847.2 gi|284163925|ref|YP_003402204.1| - 0.094 13.2 0.1 0.55 10.8 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain Rossmann-like PF10727.4 gi|284163925|ref|YP_003402204.1| - 0.1 12.3 0.1 0.35 10.6 0.0 1.9 2 0 0 2 2 2 0 Rossmann-like domain Glyco_trans_4_4 PF13579.1 gi|284163925|ref|YP_003402204.1| - 0.15 12.2 1.8 0.43 10.7 1.2 1.8 1 1 1 2 2 2 0 Glycosyl transferase 4-like domain AsnC_trans_reg PF01037.16 gi|284163926|ref|YP_003402205.1| - 8.6e-08 31.7 0.0 9.5e-08 31.6 0.0 1.0 1 0 0 1 1 1 1 AsnC family VESA1_N PF12785.2 gi|284163926|ref|YP_003402205.1| - 0.082 11.8 0.1 0.088 11.7 0.0 1.1 1 0 0 1 1 1 0 Variant erythrocyte surface antigen-1 CitMHS PF03600.11 gi|284163927|ref|YP_003402206.1| - 4.3e-35 120.9 14.8 6.1e-35 120.4 10.2 1.3 1 0 0 1 1 1 1 Citrate transporter TrkA_C PF02080.16 gi|284163927|ref|YP_003402206.1| - 3.4e-22 77.7 7.1 2.5e-11 42.9 0.2 2.4 2 0 0 2 2 2 2 TrkA-C domain Na_sulph_symp PF00939.14 gi|284163927|ref|YP_003402206.1| - 1e-21 77.4 37.9 1.3e-16 60.6 10.4 3.0 2 1 1 3 3 3 3 Sodium:sulfate symporter transmembrane region Peptidase_S24 PF00717.18 gi|284163927|ref|YP_003402206.1| - 0.12 11.9 0.1 0.28 10.8 0.0 1.5 1 0 0 1 1 1 0 Peptidase S24-like APH PF01636.18 gi|284163928|ref|YP_003402207.1| - 6.9e-16 58.7 2.0 7.2e-16 58.6 0.8 1.4 1 1 0 1 1 1 1 Phosphotransferase enzyme family Fructosamin_kin PF03881.9 gi|284163928|ref|YP_003402207.1| - 0.00037 19.5 0.0 0.0014 17.6 0.0 1.8 1 1 0 1 1 1 1 Fructosamine kinase Thymidylate_kin PF02223.12 gi|284163929|ref|YP_003402208.1| - 3e-36 124.5 0.0 4e-36 124.1 0.0 1.2 1 0 0 1 1 1 1 Thymidylate kinase AAA_33 PF13671.1 gi|284163929|ref|YP_003402208.1| - 4.4e-07 29.8 0.0 7.1e-07 29.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|284163929|ref|YP_003402208.1| - 1.2e-06 28.7 0.0 3.5e-06 27.3 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|284163929|ref|YP_003402208.1| - 0.0004 21.1 0.4 0.0017 19.1 0.3 2.0 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|284163929|ref|YP_003402208.1| - 0.00064 19.7 0.2 0.00082 19.3 0.1 1.2 1 0 0 1 1 1 1 AAA domain dNK PF01712.14 gi|284163929|ref|YP_003402208.1| - 0.0017 18.3 0.0 0.0024 17.7 0.0 1.3 1 0 0 1 1 1 1 Deoxynucleoside kinase DUF3179 PF11376.3 gi|284163929|ref|YP_003402208.1| - 0.013 14.7 0.1 0.04 13.1 0.1 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3179) AAA_22 PF13401.1 gi|284163929|ref|YP_003402208.1| - 0.033 14.3 0.0 0.12 12.4 0.0 2.0 2 1 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|284163929|ref|YP_003402208.1| - 0.048 13.3 0.0 0.072 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|284163929|ref|YP_003402208.1| - 0.1 12.5 0.1 0.27 11.1 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain NAD_binding_10 PF13460.1 gi|284163930|ref|YP_003402209.1| - 5.7e-29 101.4 0.1 7.6e-29 101.0 0.1 1.2 1 0 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|284163930|ref|YP_003402209.1| - 3.4e-18 65.9 0.0 9.6e-17 61.2 0.0 2.1 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|284163930|ref|YP_003402209.1| - 1e-12 47.3 0.0 4.9e-11 41.8 0.0 2.1 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|284163930|ref|YP_003402209.1| - 6.3e-12 44.9 0.0 3e-06 26.3 0.0 2.2 2 0 0 2 2 2 2 RmlD substrate binding domain NmrA PF05368.8 gi|284163930|ref|YP_003402209.1| - 1.3e-10 40.9 0.0 1.7e-10 40.5 0.0 1.1 1 0 0 1 1 1 1 NmrA-like family NAD_binding_4 PF07993.7 gi|284163930|ref|YP_003402209.1| - 8.4e-07 28.1 0.0 0.048 12.5 0.0 2.7 1 1 2 3 3 3 2 Male sterility protein adh_short PF00106.20 gi|284163930|ref|YP_003402209.1| - 9.9e-06 25.5 0.2 9.2e-05 22.4 0.1 2.1 1 1 0 1 1 1 1 short chain dehydrogenase NAD_binding_2 PF03446.10 gi|284163930|ref|YP_003402209.1| - 0.00027 20.8 0.0 0.00047 20.0 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Saccharop_dh PF03435.13 gi|284163930|ref|YP_003402209.1| - 0.00097 18.2 0.0 0.0017 17.4 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase KR PF08659.5 gi|284163930|ref|YP_003402209.1| - 0.0026 17.4 0.0 0.14 11.7 0.0 2.2 2 0 0 2 2 2 1 KR domain DapB_N PF01113.15 gi|284163930|ref|YP_003402209.1| - 0.0041 17.0 0.0 0.0081 16.0 0.0 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Polysacc_synt_2 PF02719.10 gi|284163930|ref|YP_003402209.1| - 0.021 13.7 0.1 0.68 8.7 0.1 2.3 1 1 0 1 1 1 0 Polysaccharide biosynthesis protein Glyco_trans_4_4 PF13579.1 gi|284163930|ref|YP_003402209.1| - 0.027 14.6 0.1 0.089 12.9 0.1 1.9 2 1 0 2 2 2 0 Glycosyl transferase 4-like domain UDPG_MGDP_dh_N PF03721.9 gi|284163930|ref|YP_003402209.1| - 0.038 13.3 0.0 0.081 12.2 0.0 1.5 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Glyco_transf_4 PF13439.1 gi|284163930|ref|YP_003402209.1| - 0.07 12.8 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase Family 4 Tubulin PF00091.20 gi|284163931|ref|YP_003402210.1| - 1.9e-25 89.9 0.1 4.4e-25 88.7 0.0 1.6 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain CofC PF01983.11 gi|284163932|ref|YP_003402211.1| - 3.7e-34 117.5 0.0 5.3e-34 117.0 0.0 1.2 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.2 gi|284163932|ref|YP_003402211.1| - 0.085 12.9 4.9 0.17 11.9 3.4 1.5 1 1 0 1 1 1 0 MobA-like NTP transferase domain Radical_SAM PF04055.16 gi|284163934|ref|YP_003402213.1| - 9.7e-14 51.8 0.1 1.7e-13 51.0 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily GvpH PF05455.6 gi|284163935|ref|YP_003402214.1| - 2.6e-08 33.7 1.7 4.4e-08 32.9 1.2 1.6 1 1 0 1 1 1 1 GvpH Radical_SAM PF04055.16 gi|284163936|ref|YP_003402215.1| - 1e-16 61.5 0.6 1.7e-16 60.8 0.1 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Abhydrolase_6 PF12697.2 gi|284163937|ref|YP_003402216.1| - 1.3e-42 146.2 7.7 1.5e-42 146.0 5.3 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|284163937|ref|YP_003402216.1| - 1.7e-21 76.5 0.0 2.8e-21 75.7 0.0 1.3 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|284163937|ref|YP_003402216.1| - 2.9e-17 63.0 0.0 4e-17 62.5 0.0 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold DLH PF01738.13 gi|284163937|ref|YP_003402216.1| - 0.0003 20.1 0.0 0.0069 15.6 0.0 2.1 2 0 0 2 2 2 1 Dienelactone hydrolase family Thioesterase PF00975.15 gi|284163937|ref|YP_003402216.1| - 0.00043 20.5 0.0 0.00069 19.8 0.0 1.3 1 0 0 1 1 1 1 Thioesterase domain Hydrolase_4 PF12146.3 gi|284163937|ref|YP_003402216.1| - 0.0027 17.5 0.0 0.0076 16.0 0.0 1.7 2 0 0 2 2 2 1 Putative lysophospholipase PGAP1 PF07819.8 gi|284163937|ref|YP_003402216.1| - 0.046 13.2 0.0 0.52 9.8 0.0 2.0 1 1 0 1 1 1 0 PGAP1-like protein Esterase PF00756.15 gi|284163937|ref|YP_003402216.1| - 0.059 12.7 0.1 3.1 7.1 0.0 2.3 2 1 0 2 2 2 0 Putative esterase Imm1 PF14430.1 gi|284163937|ref|YP_003402216.1| - 0.062 13.4 0.0 0.3 11.2 0.0 2.1 2 0 0 2 2 2 0 Immunity protein Imm1 Abhydrolase_4 PF08386.5 gi|284163937|ref|YP_003402216.1| - 0.12 12.2 0.0 0.39 10.6 0.0 1.8 2 0 0 2 2 2 0 TAP-like protein Abhydrolase_3 PF07859.8 gi|284163937|ref|YP_003402216.1| - 0.14 11.7 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 alpha/beta hydrolase fold SAICAR_synt PF01259.13 gi|284163939|ref|YP_003402218.1| - 1e-18 67.3 0.0 2.2e-18 66.2 0.0 1.4 1 1 0 1 1 1 1 SAICAR synthetase DUF4110 PF13422.1 gi|284163939|ref|YP_003402218.1| - 0.23 11.3 0.0 0.23 11.3 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4110) IncA PF04156.9 gi|284163940|ref|YP_003402219.1| - 0.3 10.6 2.9 0.3 10.6 2.0 1.1 1 0 0 1 1 1 0 IncA protein DUF1469 PF07332.6 gi|284163940|ref|YP_003402219.1| - 2.9 7.6 6.8 4.9 6.9 4.7 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1469) ThiS PF02597.15 gi|284163941|ref|YP_003402220.1| - 1.8e-07 31.4 0.0 2e-07 31.2 0.0 1.0 1 0 0 1 1 1 1 ThiS family Lambda_tail_I PF06805.7 gi|284163941|ref|YP_003402220.1| - 0.0012 18.6 0.0 0.0014 18.4 0.0 1.1 1 0 0 1 1 1 1 Bacteriophage lambda tail assembly protein I FmdA_AmdA PF03069.10 gi|284163942|ref|YP_003402221.1| - 1.6e-51 175.1 1.2 2e-50 171.5 0.8 1.9 1 1 1 2 2 2 2 Acetamidase/Formamidase family DZR PF12773.2 gi|284163942|ref|YP_003402221.1| - 0.01 15.6 0.4 0.019 14.7 0.3 1.4 1 0 0 1 1 1 0 Double zinc ribbon Ribosomal_S27e PF01667.12 gi|284163942|ref|YP_003402221.1| - 0.012 15.1 0.1 0.023 14.2 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein S27 UPF0547 PF10571.4 gi|284163942|ref|YP_003402221.1| - 0.063 12.9 0.6 0.063 12.9 0.4 2.2 1 1 1 2 2 2 0 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.5 gi|284163942|ref|YP_003402221.1| - 0.066 13.1 0.7 0.27 11.2 0.7 1.9 2 0 0 2 2 2 0 Zinc ribbon domain zf-tcix PF14952.1 gi|284163942|ref|YP_003402221.1| - 0.36 10.2 2.6 11 5.5 0.1 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zinc_ribbon_2 PF13240.1 gi|284163942|ref|YP_003402221.1| - 0.44 10.0 3.5 3.5 7.2 2.2 2.3 1 1 1 2 2 2 0 zinc-ribbon domain DUF4379 PF14311.1 gi|284163942|ref|YP_003402221.1| - 0.5 10.2 2.9 0.96 9.3 2.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4379) zf-ribbon_3 PF13248.1 gi|284163942|ref|YP_003402221.1| - 0.65 9.2 5.2 4.2 6.7 3.6 2.2 1 1 1 2 2 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|284163942|ref|YP_003402221.1| - 1.7 8.1 4.3 20 4.7 3.0 2.2 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DUF2267 PF10025.4 gi|284163943|ref|YP_003402222.1| - 1.7e-13 50.7 2.5 1.4e-12 47.7 1.7 2.0 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2267) Staph_haemo PF05480.6 gi|284163943|ref|YP_003402222.1| - 0.028 14.0 0.6 1.2 8.8 0.5 2.2 2 0 0 2 2 2 0 Staphylococcus haemolytic protein SWI-SNF_Ssr4 PF08549.5 gi|284163943|ref|YP_003402222.1| - 0.042 12.1 0.1 0.051 11.8 0.1 1.0 1 0 0 1 1 1 0 Fungal domain of unknown function (DUF1750) RsbRD_N PF14361.1 gi|284163943|ref|YP_003402222.1| - 0.18 12.2 1.6 2.2 8.7 0.2 2.1 1 1 0 2 2 2 0 RsbT co-antagonist protein rsbRD N-terminal domain DUF3330 PF11809.3 gi|284163944|ref|YP_003402223.1| - 0.054 13.3 1.8 0.072 12.9 1.3 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF3330) zf-UDP PF14569.1 gi|284163944|ref|YP_003402223.1| - 0.1 12.3 0.4 0.11 12.2 0.3 1.2 1 0 0 1 1 1 0 Zinc-binding RING-finger Baculo_RING PF05883.6 gi|284163944|ref|YP_003402223.1| - 0.15 11.8 0.2 0.15 11.9 0.1 1.0 1 0 0 1 1 1 0 Baculovirus U-box/Ring-like domain Formyl_trans_N PF00551.14 gi|284163945|ref|YP_003402224.1| - 2.6e-43 147.6 0.0 4.2e-43 146.9 0.0 1.3 1 0 0 1 1 1 1 Formyl transferase ACT_6 PF13740.1 gi|284163945|ref|YP_003402224.1| - 1.5e-10 40.6 0.2 5.9e-10 38.7 0.1 2.0 2 0 0 2 2 2 1 ACT domain ACT PF01842.20 gi|284163945|ref|YP_003402224.1| - 1e-05 24.8 0.9 2.5e-05 23.6 0.1 2.2 3 0 0 3 3 3 1 ACT domain ACT_4 PF13291.1 gi|284163945|ref|YP_003402224.1| - 8.8e-05 22.7 0.3 0.00033 20.9 0.1 1.9 2 0 0 2 2 2 1 ACT domain ACT_5 PF13710.1 gi|284163945|ref|YP_003402224.1| - 0.097 12.4 0.0 0.23 11.3 0.0 1.6 1 0 0 1 1 1 0 ACT domain PurS PF02700.9 gi|284163946|ref|YP_003402225.1| - 1.2e-26 92.4 0.0 1.3e-26 92.3 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase Clp_N PF02861.15 gi|284163946|ref|YP_003402225.1| - 0.07 13.0 0.0 0.15 11.9 0.0 1.7 1 0 0 1 1 1 0 Clp amino terminal domain GATase_5 PF13507.1 gi|284163947|ref|YP_003402226.1| - 7e-41 139.8 0.0 8.7e-41 139.5 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|284163947|ref|YP_003402226.1| - 1.4e-07 31.1 0.0 1.8e-07 30.8 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|284163947|ref|YP_003402226.1| - 5.9e-05 22.7 0.0 0.00015 21.3 0.0 1.7 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain DUF4066 PF13278.1 gi|284163947|ref|YP_003402226.1| - 0.00014 21.2 0.0 0.00019 20.7 0.0 1.1 1 0 0 1 1 1 1 Putative amidotransferase DJ-1_PfpI PF01965.19 gi|284163947|ref|YP_003402226.1| - 0.0038 16.7 0.0 0.0052 16.2 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family Peptidase_C26 PF07722.8 gi|284163947|ref|YP_003402226.1| - 0.1 12.0 0.0 0.16 11.3 0.0 1.3 1 0 0 1 1 1 0 Peptidase C26 PAS_9 PF13426.1 gi|284163948|ref|YP_003402227.1| - 7e-44 148.4 1.3 3e-16 59.6 0.0 3.8 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.5 gi|284163948|ref|YP_003402227.1| - 2.1e-34 117.8 9.1 9.1e-13 48.2 0.3 4.2 3 0 0 3 3 3 3 PAS fold PAS PF00989.19 gi|284163948|ref|YP_003402227.1| - 6e-34 116.2 6.2 1e-12 47.8 0.1 4.7 5 0 0 5 5 5 3 PAS fold PAS_8 PF13188.1 gi|284163948|ref|YP_003402227.1| - 5.7e-19 67.2 0.1 6.6e-07 28.9 0.0 3.8 3 0 0 3 3 3 3 PAS domain GAF_2 PF13185.1 gi|284163948|ref|YP_003402227.1| - 3e-18 66.7 5.9 2.4e-10 41.0 0.0 4.2 4 0 0 4 4 4 2 GAF domain HATPase_c PF02518.21 gi|284163948|ref|YP_003402227.1| - 1.1e-15 57.3 0.0 2.9e-15 55.9 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|284163948|ref|YP_003402227.1| - 1.5e-15 57.0 0.0 5.7e-06 26.3 0.0 3.5 3 0 0 3 3 3 3 PAS fold GAF_3 PF13492.1 gi|284163948|ref|YP_003402227.1| - 4.5e-13 49.4 0.5 2.1e-06 27.8 0.0 2.7 2 0 0 2 2 2 2 GAF domain HATPase_c_2 PF13581.1 gi|284163948|ref|YP_003402227.1| - 4.6e-08 32.9 0.0 1.4e-07 31.3 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain Response_reg PF00072.19 gi|284163948|ref|YP_003402227.1| - 2.2e-05 24.4 0.0 7.9e-05 22.6 0.0 2.0 1 0 0 1 1 1 1 Response regulator receiver domain PAS_10 PF13596.1 gi|284163948|ref|YP_003402227.1| - 6.1e-05 23.2 0.0 1.4 9.1 0.0 3.9 3 0 0 3 3 3 1 PAS domain HisKA PF00512.20 gi|284163948|ref|YP_003402227.1| - 0.0087 16.0 4.3 0.018 15.0 0.1 3.7 3 1 0 3 3 3 1 His Kinase A (phospho-acceptor) domain VWA_2 PF13519.1 gi|284163948|ref|YP_003402227.1| - 0.019 15.1 2.4 6.4 6.8 0.1 3.3 3 0 0 3 3 3 0 von Willebrand factor type A domain HATPase_c_3 PF13589.1 gi|284163948|ref|YP_003402227.1| - 0.019 14.6 0.0 0.041 13.5 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_11 PF14598.1 gi|284163948|ref|YP_003402227.1| - 0.039 13.8 0.0 3.3 7.6 0.0 2.6 2 0 0 2 2 2 0 PAS domain HATPase_c_5 PF14501.1 gi|284163948|ref|YP_003402227.1| - 0.059 13.0 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 GHKL domain HTH_10 PF04967.7 gi|284163951|ref|YP_003402230.1| - 5.9e-17 60.9 0.2 9.4e-17 60.3 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain GerE PF00196.14 gi|284163951|ref|YP_003402230.1| - 1.9e-07 30.2 0.4 9.9e-07 27.9 0.3 2.1 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_20 PF12840.2 gi|284163951|ref|YP_003402230.1| - 7.3e-06 25.6 0.0 5.8e-05 22.8 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|284163951|ref|YP_003402230.1| - 0.00011 21.7 0.0 0.00022 20.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_38 PF13936.1 gi|284163951|ref|YP_003402230.1| - 0.00029 20.3 0.1 0.0021 17.5 0.2 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|284163951|ref|YP_003402230.1| - 0.00038 19.7 0.3 0.0016 17.6 0.2 2.1 1 1 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.7 gi|284163951|ref|YP_003402230.1| - 0.0024 17.2 0.9 0.0083 15.5 0.1 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|284163951|ref|YP_003402230.1| - 0.0032 17.0 0.1 0.0084 15.7 0.1 1.8 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.1 gi|284163951|ref|YP_003402230.1| - 0.0055 16.3 0.0 0.026 14.1 0.0 2.1 2 0 0 2 2 2 1 Homeodomain-like domain HTH_24 PF13412.1 gi|284163951|ref|YP_003402230.1| - 0.0057 16.0 0.0 0.011 15.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_1 PF00126.22 gi|284163951|ref|YP_003402230.1| - 0.009 15.7 0.5 0.021 14.5 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_30 PF13556.1 gi|284163951|ref|YP_003402230.1| - 0.031 13.8 0.2 0.12 12.0 0.0 2.0 2 1 1 3 3 3 0 PucR C-terminal helix-turn-helix domain HTH_40 PF14493.1 gi|284163951|ref|YP_003402230.1| - 0.054 13.7 0.1 0.18 12.0 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain Phage_CI_repr PF07022.8 gi|284163951|ref|YP_003402230.1| - 0.092 12.8 0.0 0.2 11.7 0.0 1.5 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain HTH_11 PF08279.7 gi|284163951|ref|YP_003402230.1| - 0.096 12.3 0.0 0.98 9.1 0.0 2.3 2 0 0 2 2 2 0 HTH domain HTH_Tnp_1 PF01527.15 gi|284163951|ref|YP_003402230.1| - 0.1 12.5 0.1 0.5 10.3 0.0 2.0 1 1 1 2 2 2 0 Transposase Phage_terminase PF10668.4 gi|284163951|ref|YP_003402230.1| - 0.11 12.2 0.0 4.4 7.1 0.0 2.4 2 0 0 2 2 2 0 Phage terminase small subunit UPF0122 PF04297.9 gi|284163951|ref|YP_003402230.1| - 0.13 12.3 0.0 0.26 11.3 0.0 1.5 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_22 PF13309.1 gi|284163951|ref|YP_003402230.1| - 0.15 11.8 0.0 0.25 11.1 0.0 1.4 1 0 0 1 1 1 0 HTH domain zf-ribbon_3 PF13248.1 gi|284163952|ref|YP_003402231.1| - 0.00095 18.2 1.0 0.056 12.6 0.1 2.3 2 0 0 2 2 2 1 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|284163952|ref|YP_003402231.1| - 0.0041 16.7 0.8 0.0055 16.3 0.5 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.5 gi|284163952|ref|YP_003402231.1| - 0.0045 16.9 3.7 1.1 9.2 0.6 2.5 2 1 0 2 2 2 2 Zinc ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|284163952|ref|YP_003402231.1| - 0.0052 16.5 0.6 2.5 7.9 0.0 2.5 2 0 0 2 2 2 2 PhnA Zinc-Ribbon Rubredoxin PF00301.15 gi|284163952|ref|YP_003402231.1| - 0.01 15.7 4.3 0.041 13.7 2.7 2.1 1 1 1 2 2 2 0 Rubredoxin Zn_Tnp_IS1595 PF12760.2 gi|284163952|ref|YP_003402231.1| - 0.018 14.8 4.9 0.52 10.1 2.6 2.4 1 1 1 2 2 2 0 Transposase zinc-ribbon domain UPF0547 PF10571.4 gi|284163952|ref|YP_003402231.1| - 0.022 14.4 3.0 0.43 10.3 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-H2C2_2 PF13465.1 gi|284163952|ref|YP_003402231.1| - 0.024 14.9 1.2 4.1 7.8 0.3 2.4 2 1 0 2 2 2 0 Zinc-finger double domain Nudix_N_2 PF14803.1 gi|284163952|ref|YP_003402231.1| - 0.041 13.5 1.3 6.3 6.5 0.1 2.6 2 0 0 2 2 2 0 Nudix N-terminal DZR PF12773.2 gi|284163952|ref|YP_003402231.1| - 0.073 12.9 2.0 1.6 8.6 0.9 2.2 1 1 1 2 2 2 0 Double zinc ribbon Elf1 PF05129.8 gi|284163952|ref|YP_003402231.1| - 0.16 11.6 1.6 2.9 7.6 0.1 2.1 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like zf-RING_3 PF14369.1 gi|284163952|ref|YP_003402231.1| - 0.28 11.1 2.5 13 5.8 0.0 2.4 3 0 0 3 3 2 0 zinc-finger TF_Zn_Ribbon PF08271.7 gi|284163952|ref|YP_003402231.1| - 0.31 10.3 2.2 6.8 6.1 0.2 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding Lar_restr_allev PF14354.1 gi|284163952|ref|YP_003402231.1| - 0.38 11.0 2.8 0.55 10.5 1.6 1.6 1 1 0 1 1 1 0 Restriction alleviation protein Lar DUF2387 PF09526.5 gi|284163952|ref|YP_003402231.1| - 0.5 10.3 2.7 4.8 7.1 1.9 2.1 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) VP_N-CPKC PF11475.3 gi|284163952|ref|YP_003402231.1| - 4.8 6.7 6.2 18 4.9 0.1 3.0 3 0 0 3 3 3 0 Virion protein N terminal domain PAS_9 PF13426.1 gi|284163953|ref|YP_003402232.1| - 9.3e-31 106.3 0.1 2.3e-28 98.6 0.1 2.9 2 0 0 2 2 2 1 PAS domain HTH_10 PF04967.7 gi|284163953|ref|YP_003402232.1| - 1.1e-20 72.9 0.0 4.4e-20 71.0 0.0 2.1 2 0 0 2 2 2 1 HTH DNA binding domain PAS PF00989.19 gi|284163953|ref|YP_003402232.1| - 6e-18 64.6 1.1 8.6e-14 51.2 0.0 3.1 3 0 0 3 3 3 2 PAS fold PAS_4 PF08448.5 gi|284163953|ref|YP_003402232.1| - 1.7e-12 47.3 3.0 3.4e-11 43.1 0.1 3.6 4 0 0 4 4 4 1 PAS fold PAS_3 PF08447.6 gi|284163953|ref|YP_003402232.1| - 1.9e-10 40.6 0.1 4e-10 39.6 0.1 1.6 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|284163953|ref|YP_003402232.1| - 6.7e-09 35.2 0.2 0.0039 16.9 0.0 2.7 2 0 0 2 2 2 2 PAS domain GAF_2 PF13185.1 gi|284163953|ref|YP_003402232.1| - 3.6e-07 30.7 0.7 3.2e-06 27.6 0.3 2.7 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.1 gi|284163953|ref|YP_003402232.1| - 0.0013 18.8 1.5 0.0034 17.4 0.0 2.5 3 0 0 3 3 3 1 GAF domain DUF134 PF02001.11 gi|284163953|ref|YP_003402232.1| - 0.076 12.9 0.0 0.2 11.5 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function DUF134 HTH_11 PF08279.7 gi|284163953|ref|YP_003402232.1| - 0.12 11.9 0.0 0.34 10.6 0.0 1.7 1 0 0 1 1 1 0 HTH domain DUF1328 PF07043.8 gi|284163954|ref|YP_003402233.1| - 3.1e-09 36.6 20.0 4.4e-09 36.1 13.9 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1328) Epiglycanin_C PF14654.1 gi|284163954|ref|YP_003402233.1| - 0.24 11.4 2.3 0.3 11.1 1.6 1.2 1 0 0 1 1 1 0 Mucin, catalytic, TM and cytoplasmic tail region DUF3784 PF12650.2 gi|284163954|ref|YP_003402233.1| - 1.1 9.2 5.9 1.6 8.7 4.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3784) AFOR_C PF01314.13 gi|284163955|ref|YP_003402234.1| - 5e-126 420.4 3.2 6e-126 420.1 2.2 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|284163955|ref|YP_003402234.1| - 3.1e-78 261.7 0.0 5.3e-78 260.9 0.0 1.4 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Methyltransf_11 PF08241.7 gi|284163956|ref|YP_003402235.1| - 2.2e-13 50.5 0.0 3.8e-13 49.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|284163956|ref|YP_003402235.1| - 9.1e-10 38.8 0.0 1.5e-09 38.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|284163956|ref|YP_003402235.1| - 7.3e-09 36.0 0.0 1.2e-08 35.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|284163956|ref|YP_003402235.1| - 1.4e-08 34.6 0.0 2.3e-08 33.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|284163956|ref|YP_003402235.1| - 2.4e-08 33.7 0.0 3.3e-08 33.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|284163956|ref|YP_003402235.1| - 1.6e-06 28.1 1.6 1.6e-06 28.1 1.1 1.9 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|284163956|ref|YP_003402235.1| - 1e-05 24.7 0.0 1.4e-05 24.3 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|284163956|ref|YP_003402235.1| - 8.8e-05 23.0 0.4 0.00022 21.7 0.3 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|284163956|ref|YP_003402235.1| - 0.0064 15.5 0.0 0.0096 14.9 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase TauE PF01925.14 gi|284163956|ref|YP_003402235.1| - 0.014 14.8 0.8 0.018 14.5 0.5 1.2 1 0 0 1 1 1 0 Sulfite exporter TauE/SafE CMAS PF02353.15 gi|284163956|ref|YP_003402235.1| - 0.017 14.2 0.0 0.028 13.5 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase MTS PF05175.9 gi|284163956|ref|YP_003402235.1| - 0.088 12.1 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain PCMT PF01135.14 gi|284163956|ref|YP_003402235.1| - 0.098 12.1 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_8 PF05148.10 gi|284163956|ref|YP_003402235.1| - 0.11 12.0 0.0 0.44 10.1 0.0 1.8 2 0 0 2 2 2 0 Hypothetical methyltransferase MetW PF07021.7 gi|284163956|ref|YP_003402235.1| - 0.15 11.4 0.0 0.27 10.6 0.0 1.5 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW NMT1 PF09084.6 gi|284163957|ref|YP_003402236.1| - 4.6e-32 111.3 0.0 5.8e-32 111.0 0.0 1.1 1 0 0 1 1 1 1 NMT1/THI5 like NMT1_2 PF13379.1 gi|284163957|ref|YP_003402236.1| - 3.8e-06 26.4 0.8 5e-05 22.8 0.6 2.7 1 1 0 1 1 1 1 NMT1-like family BPD_transp_1 PF00528.17 gi|284163958|ref|YP_003402237.1| - 1.1e-20 73.9 18.3 1.1e-20 73.9 12.7 1.7 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component Methyltransf_11 PF08241.7 gi|284163959|ref|YP_003402238.1| - 2.8e-21 75.7 0.0 4.8e-21 75.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|284163959|ref|YP_003402238.1| - 1.9e-17 63.2 0.0 2.5e-17 62.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|284163959|ref|YP_003402238.1| - 1.2e-13 51.1 0.0 1.8e-13 50.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|284163959|ref|YP_003402238.1| - 1.8e-13 50.1 0.0 2.6e-13 49.6 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|284163959|ref|YP_003402238.1| - 6.7e-13 48.6 0.1 1.4e-12 47.6 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|284163959|ref|YP_003402238.1| - 1.8e-12 47.8 0.0 4.3e-12 46.5 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|284163959|ref|YP_003402238.1| - 1.9e-11 44.2 0.1 3.2e-11 43.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|284163959|ref|YP_003402238.1| - 2.2e-11 44.0 0.0 5.4e-11 42.8 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|284163959|ref|YP_003402238.1| - 9e-08 31.5 0.0 1.1e-07 31.2 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MetW PF07021.7 gi|284163959|ref|YP_003402238.1| - 2.8e-06 26.8 0.0 4.5e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_8 PF05148.10 gi|284163959|ref|YP_003402238.1| - 0.00039 20.1 0.0 0.0033 17.0 0.0 2.0 1 1 0 1 1 1 1 Hypothetical methyltransferase MTS PF05175.9 gi|284163959|ref|YP_003402238.1| - 0.0019 17.5 0.0 0.0034 16.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_32 PF13679.1 gi|284163959|ref|YP_003402238.1| - 0.0027 17.3 0.0 0.004 16.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|284163959|ref|YP_003402238.1| - 0.0055 16.2 0.0 0.0086 15.6 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) UPF0146 PF03686.8 gi|284163959|ref|YP_003402238.1| - 0.0067 16.2 0.0 0.029 14.2 0.0 1.9 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0146) DOT1 PF08123.8 gi|284163959|ref|YP_003402238.1| - 0.017 14.4 0.0 0.025 13.9 0.0 1.1 1 0 0 1 1 1 0 Histone methylation protein DOT1 Methyltransf_24 PF13578.1 gi|284163959|ref|YP_003402238.1| - 0.018 15.8 0.1 0.042 14.6 0.1 1.7 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_15 PF09445.5 gi|284163959|ref|YP_003402238.1| - 0.05 13.1 0.0 0.069 12.7 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase UPF0020 PF01170.13 gi|284163959|ref|YP_003402238.1| - 0.07 12.7 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 ADH_zinc_N PF00107.21 gi|284163959|ref|YP_003402238.1| - 0.13 11.8 0.0 1.1 8.7 0.0 2.3 1 1 0 1 1 1 0 Zinc-binding dehydrogenase Methyltransf_4 PF02390.12 gi|284163959|ref|YP_003402238.1| - 0.14 11.1 0.2 0.26 10.3 0.0 1.5 2 0 0 2 2 2 0 Putative methyltransferase FmrO PF07091.6 gi|284163959|ref|YP_003402238.1| - 0.16 10.9 0.0 0.22 10.4 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) BPD_transp_1 PF00528.17 gi|284163960|ref|YP_003402239.1| - 1.2e-16 60.8 13.2 1.2e-16 60.8 9.1 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|284163961|ref|YP_003402240.1| - 3.5e-30 105.0 0.0 5.9e-30 104.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284163961|ref|YP_003402240.1| - 2.4e-06 27.7 0.0 0.011 15.7 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|284163961|ref|YP_003402240.1| - 0.00025 21.0 0.2 0.00055 19.9 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|284163961|ref|YP_003402240.1| - 0.0007 18.8 0.0 0.0012 18.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|284163961|ref|YP_003402240.1| - 0.0011 19.0 0.6 0.0042 17.2 0.2 2.3 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|284163961|ref|YP_003402240.1| - 0.0031 17.3 0.9 0.0047 16.8 0.0 1.9 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|284163961|ref|YP_003402240.1| - 0.0036 16.8 0.0 0.0082 15.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.4 gi|284163961|ref|YP_003402240.1| - 0.0046 15.6 0.1 0.28 9.7 0.0 2.3 2 1 0 2 2 2 1 Predicted ATPase of the ABC class NB-ARC PF00931.17 gi|284163961|ref|YP_003402240.1| - 0.0085 14.9 0.0 0.018 13.9 0.0 1.5 1 0 0 1 1 1 1 NB-ARC domain AAA_25 PF13481.1 gi|284163961|ref|YP_003402240.1| - 0.0092 15.3 0.1 0.032 13.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|284163961|ref|YP_003402240.1| - 0.013 15.1 0.3 0.023 14.3 0.2 1.4 1 0 0 1 1 1 0 NACHT domain Arch_ATPase PF01637.13 gi|284163961|ref|YP_003402240.1| - 0.013 15.1 0.0 0.025 14.2 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase AAA_28 PF13521.1 gi|284163961|ref|YP_003402240.1| - 0.02 14.8 0.9 0.049 13.5 0.0 2.2 3 0 0 3 3 3 0 AAA domain AAA_14 PF13173.1 gi|284163961|ref|YP_003402240.1| - 0.026 14.4 0.1 0.075 12.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|284163961|ref|YP_003402240.1| - 0.027 14.8 0.0 0.037 14.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain PIG-L PF02585.12 gi|284163961|ref|YP_003402240.1| - 0.027 14.9 0.0 0.042 14.3 0.0 1.4 1 0 0 1 1 1 0 GlcNAc-PI de-N-acetylase AAA PF00004.24 gi|284163961|ref|YP_003402240.1| - 0.038 14.2 0.8 0.15 12.2 0.4 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|284163961|ref|YP_003402240.1| - 0.041 13.4 0.1 0.17 11.4 0.0 2.0 2 1 0 2 2 2 0 AAA domain MobB PF03205.9 gi|284163961|ref|YP_003402240.1| - 0.057 13.1 0.6 0.12 12.0 0.3 1.6 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B PduV-EutP PF10662.4 gi|284163961|ref|YP_003402240.1| - 0.077 12.4 0.1 0.14 11.6 0.1 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_10 PF12846.2 gi|284163961|ref|YP_003402240.1| - 0.081 12.3 0.0 0.2 11.0 0.0 1.6 1 0 0 1 1 1 0 AAA-like domain AAA_24 PF13479.1 gi|284163961|ref|YP_003402240.1| - 0.094 12.2 0.4 0.18 11.3 0.3 1.4 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|284163961|ref|YP_003402240.1| - 0.096 13.1 0.0 0.21 12.1 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein SMC_N PF02463.14 gi|284163961|ref|YP_003402240.1| - 0.13 11.4 0.0 1.6 7.9 0.0 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|284163961|ref|YP_003402240.1| - 0.17 12.7 1.2 0.17 12.7 0.8 2.4 2 1 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|284163961|ref|YP_003402240.1| - 0.61 9.7 2.0 6.4 6.4 0.5 2.2 2 0 0 2 2 2 0 NTPase AAA_18 PF13238.1 gi|284163961|ref|YP_003402240.1| - 0.86 9.9 2.9 1 9.6 1.1 1.8 2 0 0 2 2 1 0 AAA domain AAA_19 PF13245.1 gi|284163961|ref|YP_003402240.1| - 3 7.6 5.3 0.49 10.1 0.4 2.2 3 0 0 3 3 1 0 Part of AAA domain NMT1 PF09084.6 gi|284163962|ref|YP_003402241.1| - 2.2e-29 102.5 0.0 3e-29 102.1 0.0 1.1 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|284163962|ref|YP_003402241.1| - 4.8e-09 35.9 0.0 7.7e-09 35.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein GntR PF00392.16 gi|284163962|ref|YP_003402241.1| - 0.00032 20.0 0.1 0.0012 18.2 0.1 2.0 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR_2 PF12802.2 gi|284163962|ref|YP_003402241.1| - 0.0018 17.9 0.9 0.0067 16.0 0.3 2.3 2 0 0 2 2 2 1 MarR family TrmB PF01978.14 gi|284163962|ref|YP_003402241.1| - 0.019 14.6 0.0 0.037 13.7 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|284163962|ref|YP_003402241.1| - 0.022 14.4 0.1 0.042 13.5 0.1 1.4 1 0 0 1 1 1 0 MarR family NMT1_2 PF13379.1 gi|284163962|ref|YP_003402241.1| - 0.044 13.1 0.0 0.082 12.2 0.0 1.4 1 0 0 1 1 1 0 NMT1-like family SBP_bac_3 PF00497.15 gi|284163962|ref|YP_003402241.1| - 0.059 12.6 0.0 0.39 9.9 0.0 2.2 2 2 0 2 2 2 0 Bacterial extracellular solute-binding proteins, family 3 HTH_Crp_2 PF13545.1 gi|284163962|ref|YP_003402241.1| - 0.14 11.9 1.2 0.39 10.5 0.3 2.2 2 1 0 2 2 2 0 Crp-like helix-turn-helix domain PQQ PF01011.16 gi|284163964|ref|YP_003402243.1| - 3.9e-29 98.7 5.3 0.0005 19.4 0.0 7.4 7 0 0 7 7 7 6 PQQ enzyme repeat PQQ_2 PF13360.1 gi|284163964|ref|YP_003402243.1| - 2.6e-22 79.4 6.7 1.7e-11 44.0 1.1 3.2 2 1 0 2 2 2 2 PQQ-like domain PQQ_3 PF13570.1 gi|284163964|ref|YP_003402243.1| - 8.6e-10 38.5 26.9 0.001 19.2 0.3 7.4 7 0 0 7 7 7 4 PQQ-like domain Copper-bind PF00127.15 gi|284163965|ref|YP_003402244.1| - 1.6e-08 34.6 1.1 7.4e-06 26.1 0.0 3.5 4 0 0 4 4 4 2 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.4 gi|284163965|ref|YP_003402244.1| - 0.0037 17.1 6.6 0.0071 16.2 4.6 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Na_Ca_ex PF01699.19 gi|284163966|ref|YP_003402245.1| - 3.5e-21 75.2 32.0 5.4e-17 61.6 7.4 2.3 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Na_Ca_ex PF01699.19 gi|284163967|ref|YP_003402246.1| - 2.7e-12 46.4 36.3 9.2e-10 38.2 8.9 2.4 2 0 0 2 2 2 2 Sodium/calcium exchanger protein MttA_Hcf106 PF02416.11 gi|284163967|ref|YP_003402246.1| - 1.5 8.0 4.1 12 5.1 0.3 3.1 2 0 0 2 2 2 0 mttA/Hcf106 family DUF336 PF03928.9 gi|284163968|ref|YP_003402247.1| - 4.4e-39 133.3 0.1 4.8e-39 133.1 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF336) ADH_N PF08240.7 gi|284163969|ref|YP_003402248.1| - 5.2e-26 90.5 1.1 9.9e-26 89.6 0.7 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|284163969|ref|YP_003402248.1| - 4.3e-10 39.2 0.0 9.9e-10 38.0 0.0 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N_assoc PF13823.1 gi|284163969|ref|YP_003402248.1| - 7.4e-09 35.1 1.0 2.1e-08 33.6 0.7 1.8 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-associated Methyltransf_18 PF12847.2 gi|284163969|ref|YP_003402248.1| - 0.00016 22.2 0.0 0.00044 20.8 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Shikimate_DH PF01488.15 gi|284163969|ref|YP_003402248.1| - 0.0008 19.5 0.1 0.03 14.4 0.0 2.3 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase HI0933_like PF03486.9 gi|284163969|ref|YP_003402248.1| - 0.0068 14.9 0.1 0.031 12.7 0.1 1.8 2 0 0 2 2 2 1 HI0933-like protein DUF1059 PF06348.6 gi|284163970|ref|YP_003402249.1| - 0.00022 20.9 0.3 0.00025 20.8 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1059) zf-like PF04071.7 gi|284163970|ref|YP_003402249.1| - 0.097 12.3 0.1 0.098 12.3 0.0 1.0 1 0 0 1 1 1 0 Cysteine-rich small domain APOC4 PF15119.1 gi|284163970|ref|YP_003402249.1| - 0.12 12.3 0.0 0.13 12.2 0.0 1.1 1 0 0 1 1 1 0 Apolipoprotein C4 cobW PF02492.14 gi|284163972|ref|YP_003402251.1| - 3e-49 166.8 0.0 4.3e-49 166.3 0.0 1.2 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.9 gi|284163972|ref|YP_003402251.1| - 3.2e-30 103.7 0.1 5.4e-30 102.9 0.0 1.4 1 0 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain Arch_ATPase PF01637.13 gi|284163972|ref|YP_003402251.1| - 0.0083 15.8 0.0 0.021 14.5 0.0 1.6 2 0 0 2 2 2 1 Archaeal ATPase AAA_16 PF13191.1 gi|284163972|ref|YP_003402251.1| - 0.015 15.3 0.0 0.029 14.3 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain T2SE PF00437.15 gi|284163972|ref|YP_003402251.1| - 0.018 13.9 0.0 0.028 13.3 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein GTP_EFTU PF00009.22 gi|284163972|ref|YP_003402251.1| - 0.033 13.6 0.0 6.1 6.2 0.0 2.2 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain MobB PF03205.9 gi|284163972|ref|YP_003402251.1| - 0.046 13.4 0.0 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|284163972|ref|YP_003402251.1| - 0.055 13.3 0.0 0.1 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|284163972|ref|YP_003402251.1| - 0.081 12.8 0.0 0.23 11.4 0.0 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_10 PF12846.2 gi|284163972|ref|YP_003402251.1| - 0.11 11.9 0.2 0.48 9.8 0.1 1.9 1 1 1 2 2 2 0 AAA-like domain Viral_helicase1 PF01443.13 gi|284163972|ref|YP_003402251.1| - 0.12 11.8 0.0 0.19 11.1 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase DUF258 PF03193.11 gi|284163972|ref|YP_003402251.1| - 0.15 11.2 0.0 0.32 10.1 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|284163972|ref|YP_003402251.1| - 0.16 11.7 0.4 0.45 10.2 0.3 1.7 1 0 0 1 1 1 0 Part of AAA domain DUF2303 PF10065.4 gi|284163972|ref|YP_003402251.1| - 0.2 10.5 0.0 0.31 9.8 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2303) HTH_5 PF01022.15 gi|284163973|ref|YP_003402252.1| - 2e-13 49.7 0.0 3e-13 49.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|284163973|ref|YP_003402252.1| - 3.6e-12 45.8 0.0 5.2e-12 45.3 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|284163973|ref|YP_003402252.1| - 1.4e-06 27.8 0.0 2.4e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|284163973|ref|YP_003402252.1| - 9.8e-06 25.0 0.3 1.7e-05 24.3 0.0 1.5 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|284163973|ref|YP_003402252.1| - 4.7e-05 23.0 0.0 6.9e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|284163973|ref|YP_003402252.1| - 7.5e-05 22.3 0.0 0.00011 21.8 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|284163973|ref|YP_003402252.1| - 0.00046 19.5 0.0 0.0023 17.2 0.0 2.0 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|284163973|ref|YP_003402252.1| - 0.0011 19.2 0.0 0.0015 18.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain LexA_DNA_bind PF01726.11 gi|284163973|ref|YP_003402252.1| - 0.0017 17.8 0.0 0.0026 17.2 0.0 1.4 1 0 0 1 1 1 1 LexA DNA binding domain PadR PF03551.9 gi|284163973|ref|YP_003402252.1| - 0.0025 17.5 0.1 0.0069 16.1 0.1 1.7 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|284163973|ref|YP_003402252.1| - 0.014 15.2 0.0 0.019 14.7 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix DUF2250 PF10007.4 gi|284163973|ref|YP_003402252.1| - 0.025 14.4 0.2 0.16 11.8 0.1 1.8 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) ArsR PF09824.4 gi|284163973|ref|YP_003402252.1| - 0.039 13.2 0.0 0.045 13.0 0.0 1.1 1 0 0 1 1 1 0 ArsR transcriptional regulator Rrf2 PF02082.15 gi|284163973|ref|YP_003402252.1| - 0.049 13.7 0.0 0.07 13.2 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator Fe_dep_repress PF01325.14 gi|284163973|ref|YP_003402252.1| - 0.057 13.3 0.0 0.095 12.6 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain PaaX PF07848.7 gi|284163973|ref|YP_003402252.1| - 0.063 13.2 0.1 0.09 12.7 0.1 1.2 1 0 0 1 1 1 0 PaaX-like protein HTH_34 PF13601.1 gi|284163973|ref|YP_003402252.1| - 0.092 12.7 0.0 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain Molybdopterin PF00384.17 gi|284163976|ref|YP_003402255.1| - 7.1e-74 249.0 0.0 8.8e-74 248.7 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|284163976|ref|YP_003402255.1| - 1.3e-28 98.9 0.2 2.6e-28 98.0 0.1 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|284163976|ref|YP_003402255.1| - 1.4e-13 50.3 0.2 3.9e-13 48.9 0.1 1.8 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain zinc-ribbons_6 PF07191.7 gi|284163977|ref|YP_003402256.1| - 0.63 9.8 6.0 1.5 8.7 4.1 1.6 1 0 0 1 1 1 0 zinc-ribbons AFOR_C PF01314.13 gi|284163978|ref|YP_003402257.1| - 1.8e-122 408.7 2.4 2.2e-122 408.4 1.6 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|284163978|ref|YP_003402257.1| - 3.5e-78 261.5 0.1 5.6e-78 260.9 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain DUF998 PF06197.8 gi|284163979|ref|YP_003402258.1| - 1.7e-22 79.6 26.8 2.1e-22 79.3 18.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF998) DUF457 PF04307.9 gi|284163980|ref|YP_003402259.1| - 1.7e-05 24.1 15.6 2.1e-05 23.9 10.3 1.5 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) HTH_20 PF12840.2 gi|284163981|ref|YP_003402260.1| - 1.9e-12 46.7 0.2 2.7e-12 46.2 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|284163981|ref|YP_003402260.1| - 2.7e-06 26.8 0.1 5e-06 26.0 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|284163981|ref|YP_003402260.1| - 3.6e-06 26.5 0.1 5.3e-06 26.0 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB ArsR PF09824.4 gi|284163981|ref|YP_003402260.1| - 1.8e-05 24.1 0.0 2.1e-05 23.8 0.0 1.1 1 0 0 1 1 1 1 ArsR transcriptional regulator MarR_2 PF12802.2 gi|284163981|ref|YP_003402260.1| - 1.8e-05 24.2 0.1 2.7e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|284163981|ref|YP_003402260.1| - 0.00014 21.1 0.0 0.0002 20.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|284163981|ref|YP_003402260.1| - 0.014 15.0 0.0 0.019 14.6 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family FUR PF01475.14 gi|284163981|ref|YP_003402260.1| - 0.02 14.8 0.1 0.024 14.5 0.1 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_11 PF08279.7 gi|284163981|ref|YP_003402260.1| - 0.02 14.5 0.1 0.03 13.9 0.1 1.2 1 0 0 1 1 1 0 HTH domain Rrf2 PF02082.15 gi|284163981|ref|YP_003402260.1| - 0.022 14.8 0.0 0.033 14.2 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator Fe_dep_repress PF01325.14 gi|284163981|ref|YP_003402260.1| - 0.025 14.4 0.0 0.037 13.9 0.0 1.2 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_45 PF14947.1 gi|284163981|ref|YP_003402260.1| - 0.076 12.8 0.0 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_26 PF13443.1 gi|284163981|ref|YP_003402260.1| - 0.13 12.5 0.0 0.19 11.9 0.0 1.3 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_10 PF04967.7 gi|284163982|ref|YP_003402261.1| - 1.5e-19 69.2 0.1 2.5e-19 68.5 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain GerE PF00196.14 gi|284163982|ref|YP_003402261.1| - 0.048 12.9 0.2 1.8 7.9 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family LexA_DNA_bind PF01726.11 gi|284163982|ref|YP_003402261.1| - 0.051 13.1 0.2 0.23 11.0 0.1 2.0 1 1 0 1 1 1 0 LexA DNA binding domain Zn-ribbon_8 PF09723.5 gi|284163983|ref|YP_003402262.1| - 1.8e-08 34.1 1.2 2.1e-08 33.9 0.9 1.1 1 0 0 1 1 1 1 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|284163983|ref|YP_003402262.1| - 7.1e-06 25.0 1.5 0.0047 16.0 0.1 2.1 2 0 0 2 2 2 2 zinc-ribbon domain DNA_ligase_ZBD PF03119.11 gi|284163983|ref|YP_003402262.1| - 2e-05 24.1 3.6 0.0062 16.2 0.2 2.1 2 0 0 2 2 2 2 NAD-dependent DNA ligase C4 zinc finger domain zinc_ribbon_2 PF13240.1 gi|284163983|ref|YP_003402262.1| - 4.4e-05 22.8 1.0 0.00028 20.2 0.7 1.9 1 1 0 1 1 1 1 zinc-ribbon domain zf-Di19 PF05605.7 gi|284163983|ref|YP_003402262.1| - 0.00018 21.5 1.5 0.0061 16.6 1.1 2.0 1 1 0 1 1 1 1 Drought induced 19 protein (Di19), zinc-binding Elf1 PF05129.8 gi|284163983|ref|YP_003402262.1| - 0.00035 20.1 0.4 0.00042 19.9 0.3 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like DZR PF12773.2 gi|284163983|ref|YP_003402262.1| - 0.00063 19.5 1.1 0.00095 18.9 0.8 1.4 1 1 0 1 1 1 1 Double zinc ribbon Sgf11 PF08209.6 gi|284163983|ref|YP_003402262.1| - 0.0013 18.0 0.3 0.17 11.2 0.1 2.1 2 0 0 2 2 2 1 Sgf11 (transcriptional regulation protein) UPF0547 PF10571.4 gi|284163983|ref|YP_003402262.1| - 0.0016 18.0 2.7 0.34 10.6 0.1 2.2 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 HypA PF01155.14 gi|284163983|ref|YP_003402262.1| - 0.0019 17.8 0.8 0.0019 17.8 0.6 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family TF_Zn_Ribbon PF08271.7 gi|284163983|ref|YP_003402262.1| - 0.002 17.4 4.6 0.026 13.8 0.3 2.1 1 1 0 2 2 2 1 TFIIB zinc-binding zf-ISL3 PF14690.1 gi|284163983|ref|YP_003402262.1| - 0.0021 18.0 1.7 0.23 11.5 0.0 2.1 1 1 1 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TerY-C PF15616.1 gi|284163983|ref|YP_003402262.1| - 0.0038 17.1 3.1 0.41 10.5 0.1 2.0 1 1 1 2 2 2 2 TerY-C metal binding domain zf-LITAF-like PF10601.4 gi|284163983|ref|YP_003402262.1| - 0.0043 16.8 0.3 2.2 8.2 0.0 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain zf-IS66 PF13005.2 gi|284163983|ref|YP_003402262.1| - 0.0046 16.9 0.8 1.3 9.1 0.1 2.2 2 0 0 2 2 2 1 zinc-finger binding domain of transposase IS66 RNHCP PF12647.2 gi|284163983|ref|YP_003402262.1| - 0.0046 16.7 1.1 0.0057 16.4 0.7 1.3 1 1 0 1 1 1 1 RNHCP domain Nudix_N_2 PF14803.1 gi|284163983|ref|YP_003402262.1| - 0.0052 16.4 1.1 1.3 8.7 0.0 2.1 2 0 0 2 2 2 1 Nudix N-terminal Acetone_carb_G PF08882.6 gi|284163983|ref|YP_003402262.1| - 0.0058 16.6 1.9 0.11 12.5 0.2 2.0 1 1 1 2 2 2 1 Acetone carboxylase gamma subunit DUF329 PF03884.9 gi|284163983|ref|YP_003402262.1| - 0.0065 15.9 1.9 0.64 9.6 0.1 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF329) zinc_ribbon_4 PF13717.1 gi|284163983|ref|YP_003402262.1| - 0.0088 15.7 1.0 0.014 15.0 0.7 1.3 1 1 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|284163983|ref|YP_003402262.1| - 0.01 15.4 0.9 0.017 14.6 0.6 1.4 1 1 0 1 1 1 0 zinc-ribbon domain zf-C4_Topoisom PF01396.14 gi|284163983|ref|YP_003402262.1| - 0.01 15.2 1.4 0.81 9.2 0.1 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zinc-ribbons_6 PF07191.7 gi|284163983|ref|YP_003402262.1| - 0.012 15.3 0.8 0.022 14.5 0.6 1.5 1 1 0 1 1 1 0 zinc-ribbons DUF1610 PF07754.6 gi|284163983|ref|YP_003402262.1| - 0.013 15.6 6.8 0.13 12.3 0.5 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Kp4 PF09044.5 gi|284163983|ref|YP_003402262.1| - 0.013 15.2 0.1 0.014 15.2 0.0 1.1 1 0 0 1 1 1 0 Kp4 CpXC PF14353.1 gi|284163983|ref|YP_003402262.1| - 0.014 15.3 1.4 0.51 10.3 0.1 2.0 1 1 1 2 2 2 0 CpXC protein DUF2072 PF09845.4 gi|284163983|ref|YP_003402262.1| - 0.014 15.2 0.7 0.019 14.8 0.5 1.3 1 1 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) Cys_rich_CPXG PF14255.1 gi|284163983|ref|YP_003402262.1| - 0.015 15.1 1.5 0.048 13.5 1.0 1.7 1 1 0 1 1 1 0 Cysteine-rich CPXCG zf-Mss51 PF13824.1 gi|284163983|ref|YP_003402262.1| - 0.017 14.9 2.7 0.13 12.1 0.1 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Lar_restr_allev PF14354.1 gi|284163983|ref|YP_003402262.1| - 0.02 15.1 2.9 0.66 10.3 0.1 2.0 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-C3HC4_3 PF13920.1 gi|284163983|ref|YP_003402262.1| - 0.02 14.5 0.5 0.049 13.3 0.4 1.6 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Nop10p PF04135.7 gi|284163983|ref|YP_003402262.1| - 0.021 14.5 1.7 0.42 10.3 0.0 2.1 1 1 1 2 2 2 0 Nucleolar RNA-binding protein, Nop10p family zf-TFIIB PF13453.1 gi|284163983|ref|YP_003402262.1| - 0.026 13.7 2.0 0.31 10.2 1.9 2.0 1 1 1 2 2 2 0 Transcription factor zinc-finger Prok-RING_4 PF14447.1 gi|284163983|ref|YP_003402262.1| - 0.026 14.0 1.4 1.2 8.7 0.2 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 4 Prok-RING_1 PF14446.1 gi|284163983|ref|YP_003402262.1| - 0.027 14.2 0.4 5.4 6.8 0.0 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 DUF2116 PF09889.4 gi|284163983|ref|YP_003402262.1| - 0.028 14.1 1.9 0.85 9.4 0.2 2.1 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Zn_Tnp_IS1595 PF12760.2 gi|284163983|ref|YP_003402262.1| - 0.033 13.9 2.5 0.96 9.3 0.2 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|284163983|ref|YP_003402262.1| - 0.034 13.8 1.0 0.054 13.1 0.7 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain TFIIS_C PF01096.13 gi|284163983|ref|YP_003402262.1| - 0.041 13.5 1.2 5.9 6.6 0.1 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Ogr_Delta PF04606.7 gi|284163983|ref|YP_003402262.1| - 0.045 13.3 1.0 2.4 7.8 0.1 2.3 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger FYDLN_acid PF09538.5 gi|284163983|ref|YP_003402262.1| - 0.054 14.0 0.5 1.4 9.5 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (FYDLN_acid) zf-NADH-PPase PF09297.6 gi|284163983|ref|YP_003402262.1| - 0.058 12.9 1.8 3.3 7.2 0.0 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Ribosomal_L37ae PF01780.14 gi|284163983|ref|YP_003402262.1| - 0.06 13.2 0.2 0.073 12.9 0.1 1.2 1 0 0 1 1 1 0 Ribosomal L37ae protein family DUF1936 PF09151.5 gi|284163983|ref|YP_003402262.1| - 0.064 12.7 0.3 3.7 7.1 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) RRN7 PF11781.3 gi|284163983|ref|YP_003402262.1| - 0.095 12.2 1.4 8 6.0 0.0 2.2 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-C2H2 PF00096.21 gi|284163983|ref|YP_003402262.1| - 0.097 13.0 0.4 4.5 7.8 0.0 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type IBR PF01485.16 gi|284163983|ref|YP_003402262.1| - 0.1 12.4 0.6 0.14 12.0 0.4 1.3 1 0 0 1 1 1 0 IBR domain zf-C2HC5 PF06221.8 gi|284163983|ref|YP_003402262.1| - 0.11 12.3 0.5 0.2 11.4 0.4 1.5 1 1 0 1 1 1 0 Putative zinc finger motif, C2HC5-type zf-H2C2_2 PF13465.1 gi|284163983|ref|YP_003402262.1| - 0.11 12.8 0.9 3 8.3 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double domain Rad50_zn_hook PF04423.9 gi|284163983|ref|YP_003402262.1| - 0.11 11.9 2.7 0.29 10.6 0.0 2.1 1 1 1 2 2 2 0 Rad50 zinc hook motif Terminase_GpA PF05876.7 gi|284163983|ref|YP_003402262.1| - 0.12 10.7 0.9 0.12 10.7 0.6 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) PhnA_Zn_Ribbon PF08274.7 gi|284163983|ref|YP_003402262.1| - 0.12 12.1 1.4 6.5 6.6 0.3 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-CHY PF05495.7 gi|284163983|ref|YP_003402262.1| - 0.13 12.4 0.5 0.12 12.4 0.3 1.1 1 0 0 1 1 1 0 CHY zinc finger zf-C2H2_4 PF13894.1 gi|284163983|ref|YP_003402262.1| - 0.14 12.5 0.1 19 5.8 0.0 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger YhfH PF14149.1 gi|284163983|ref|YP_003402262.1| - 0.14 11.9 4.2 2.9 7.7 3.3 2.2 1 1 1 2 2 2 0 YhfH-like protein Desulfoferrod_N PF06397.7 gi|284163983|ref|YP_003402262.1| - 0.17 11.3 1.5 2.5 7.5 0.1 2.1 1 1 1 2 2 2 0 Desulfoferrodoxin, N-terminal domain zf-dskA_traR PF01258.12 gi|284163983|ref|YP_003402262.1| - 0.18 11.5 6.5 20 5.0 0.2 2.3 1 1 1 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger Rubredoxin PF00301.15 gi|284163983|ref|YP_003402262.1| - 0.19 11.6 5.0 33 4.4 3.5 2.2 1 1 0 1 1 1 0 Rubredoxin zf-C2H2_6 PF13912.1 gi|284163983|ref|YP_003402262.1| - 0.23 11.4 1.5 4.1 7.4 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger zf-CSL PF05207.8 gi|284163983|ref|YP_003402262.1| - 0.28 10.7 1.5 0.36 10.3 1.1 1.3 1 1 0 1 1 1 0 CSL zinc finger FdhE PF04216.7 gi|284163983|ref|YP_003402262.1| - 0.31 10.7 3.1 0.17 11.5 0.5 1.7 1 1 1 2 2 2 0 Protein involved in formate dehydrogenase formation DUF1272 PF06906.6 gi|284163983|ref|YP_003402262.1| - 0.32 10.8 2.5 4.5 7.1 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) DUF2296 PF10058.4 gi|284163983|ref|YP_003402262.1| - 0.32 10.7 1.3 1.2 8.9 0.9 1.8 1 1 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) Auto_anti-p27 PF06677.7 gi|284163983|ref|YP_003402262.1| - 0.33 10.7 1.8 13 5.6 0.1 2.1 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Cys_rich_CPCC PF14206.1 gi|284163983|ref|YP_003402262.1| - 0.38 10.3 2.1 0.5 9.9 1.5 1.3 1 1 0 1 1 1 0 Cysteine-rich CPCC Zn_Tnp_IS1 PF03811.8 gi|284163983|ref|YP_003402262.1| - 0.46 10.0 2.1 4.8 6.7 0.1 2.1 1 1 1 2 2 2 0 InsA N-terminal domain ADK_lid PF05191.9 gi|284163983|ref|YP_003402262.1| - 0.85 9.3 3.0 5.4 6.7 2.1 1.9 1 1 0 1 1 1 0 Adenylate kinase, active site lid DUF3797 PF12677.2 gi|284163983|ref|YP_003402262.1| - 1.4 8.6 3.6 11 5.7 0.3 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) Prim_Zn_Ribbon PF08273.7 gi|284163983|ref|YP_003402262.1| - 1.5 8.9 4.5 7.8 6.6 0.5 2.1 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase zf-tcix PF14952.1 gi|284163983|ref|YP_003402262.1| - 1.8 7.9 4.4 14 5.0 0.4 2.1 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-HYPF PF07503.7 gi|284163983|ref|YP_003402262.1| - 1.9 7.9 4.8 14 5.2 0.5 2.1 1 1 1 2 2 2 0 HypF finger Pyridox_ox_2 PF12900.2 gi|284163984|ref|YP_003402263.1| - 3.2e-14 52.9 0.0 4.6e-14 52.4 0.0 1.2 1 1 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|284163984|ref|YP_003402263.1| - 4.5e-07 29.7 0.0 6.2e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF2870 PF11069.3 gi|284163985|ref|YP_003402264.1| - 0.013 15.5 0.0 0.02 14.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2870) AzlD PF05437.7 gi|284163987|ref|YP_003402266.1| - 3.6e-15 55.7 10.2 4.1e-15 55.5 7.1 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport protein (AzlD) AzlC PF03591.9 gi|284163988|ref|YP_003402267.1| - 2.3e-43 147.5 12.9 2.3e-43 147.5 9.0 1.6 2 0 0 2 2 2 1 AzlC protein DUF1072 PF06380.6 gi|284163988|ref|YP_003402267.1| - 1.4 8.6 6.5 4.4 7.0 0.1 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF1072) ATPgrasp_Ter PF15632.1 gi|284163989|ref|YP_003402268.1| - 1.1e-20 73.6 0.0 5.9e-10 38.3 0.1 2.0 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_4 PF13535.1 gi|284163989|ref|YP_003402268.1| - 1.7e-13 50.7 0.2 6.3e-13 48.8 0.2 1.9 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|284163989|ref|YP_003402268.1| - 0.00031 20.6 0.0 0.0014 18.5 0.0 1.9 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|284163989|ref|YP_003402268.1| - 0.0037 16.5 0.0 0.0074 15.5 0.0 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|284163989|ref|YP_003402268.1| - 0.053 13.6 0.0 0.1 12.7 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain ThiS PF02597.15 gi|284163990|ref|YP_003402269.1| - 5.8e-19 68.3 0.1 6.6e-19 68.1 0.0 1.0 1 0 0 1 1 1 1 ThiS family Ub-Mut7C PF14451.1 gi|284163990|ref|YP_003402269.1| - 0.12 11.9 0.3 9.1 5.8 0.1 2.1 2 0 0 2 2 2 0 Mut7-C ubiquitin Glycos_transf_1 PF00534.15 gi|284163992|ref|YP_003402271.1| - 6.3e-32 110.3 0.0 9.1e-32 109.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|284163992|ref|YP_003402271.1| - 1.4e-17 64.0 0.1 2.4e-17 63.3 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|284163992|ref|YP_003402271.1| - 1.1e-10 41.9 6.6 1.1e-10 41.9 4.6 3.0 2 2 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|284163992|ref|YP_003402271.1| - 5.7e-08 32.6 0.0 9.6e-08 31.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|284163992|ref|YP_003402271.1| - 1.7e-07 31.4 0.1 3.4e-07 30.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|284163992|ref|YP_003402271.1| - 0.0016 18.2 0.0 0.0028 17.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like GPW_gp25 PF04965.9 gi|284163994|ref|YP_003402273.1| - 0.008 15.7 1.3 1.5 8.3 0.0 2.3 1 1 1 2 2 2 2 Gene 25-like lysozyme PilJ PF13675.1 gi|284163994|ref|YP_003402273.1| - 0.13 12.5 2.7 1.6 9.0 0.5 2.0 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term DUF4404 PF14357.1 gi|284163994|ref|YP_003402273.1| - 0.19 12.1 1.7 0.18 12.2 0.3 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4404) Acetyltransf_1 PF00583.19 gi|284163995|ref|YP_003402274.1| - 9.2e-09 35.2 0.0 1.7e-08 34.3 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.1 gi|284163995|ref|YP_003402274.1| - 2.2e-08 34.1 0.0 2.9e-07 30.5 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|284163995|ref|YP_003402274.1| - 2.9e-05 24.1 0.0 6.8e-05 22.9 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|284163995|ref|YP_003402274.1| - 6.5e-05 23.0 0.0 0.00012 22.1 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|284163995|ref|YP_003402274.1| - 8.1e-05 22.8 0.0 0.00012 22.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain STAT1_TAZ2bind PF12162.3 gi|284163995|ref|YP_003402274.1| - 0.14 11.6 0.2 0.3 10.5 0.2 1.5 1 0 0 1 1 1 0 STAT1 TAZ2 binding domain AAA_22 PF13401.1 gi|284163997|ref|YP_003402276.1| - 6.1e-11 42.5 0.0 2.6e-10 40.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain Bac_DnaA PF00308.13 gi|284163997|ref|YP_003402276.1| - 5.1e-09 36.1 0.0 1.4e-07 31.4 0.0 2.2 1 1 0 1 1 1 1 Bacterial dnaA protein AAA_16 PF13191.1 gi|284163997|ref|YP_003402276.1| - 6.4e-08 32.7 3.6 2.5e-06 27.6 2.5 3.0 1 1 0 1 1 1 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|284163997|ref|YP_003402276.1| - 3.6e-06 26.8 0.0 4.1e-05 23.4 0.0 2.2 1 1 0 1 1 1 1 Archaeal ATPase AAA PF00004.24 gi|284163997|ref|YP_003402276.1| - 4.5e-05 23.6 0.0 0.00021 21.5 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|284163997|ref|YP_003402276.1| - 6.4e-05 22.7 0.0 0.00014 21.5 0.0 1.8 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) NB-ARC PF00931.17 gi|284163997|ref|YP_003402276.1| - 9.5e-05 21.3 0.0 0.00013 20.9 0.0 1.1 1 0 0 1 1 1 1 NB-ARC domain AAA_18 PF13238.1 gi|284163997|ref|YP_003402276.1| - 0.00071 19.8 0.1 0.003 17.8 0.1 2.3 1 1 0 1 1 1 1 AAA domain Cdc6_C PF09079.6 gi|284163997|ref|YP_003402276.1| - 0.019 14.6 0.1 0.058 13.1 0.1 1.8 1 0 0 1 1 1 0 CDC6, C terminal AAA_14 PF13173.1 gi|284163997|ref|YP_003402276.1| - 0.02 14.8 0.0 0.038 13.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain PhoH PF02562.11 gi|284163997|ref|YP_003402276.1| - 0.046 12.9 0.0 1 8.5 0.0 2.4 3 0 0 3 3 3 0 PhoH-like protein IstB_IS21 PF01695.12 gi|284163997|ref|YP_003402276.1| - 0.12 11.7 0.0 0.32 10.4 0.0 1.7 1 0 0 1 1 1 0 IstB-like ATP binding protein DEAD PF00270.24 gi|284163997|ref|YP_003402276.1| - 0.18 11.3 0.1 4.3 6.8 0.0 2.1 1 1 0 2 2 2 0 DEAD/DEAH box helicase AAA_17 PF13207.1 gi|284163997|ref|YP_003402276.1| - 0.34 11.7 4.0 3.2 8.6 2.7 2.6 1 1 0 1 1 1 0 AAA domain HATPase_c PF02518.21 gi|284163998|ref|YP_003402277.1| - 7.9e-11 41.6 0.0 1.4e-10 40.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|284163998|ref|YP_003402277.1| - 0.0068 16.0 0.0 0.016 14.8 0.0 1.6 2 1 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.19 gi|284163999|ref|YP_003402278.1| - 7.3e-22 77.5 0.0 8.8e-22 77.2 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain HTH_10 PF04967.7 gi|284164000|ref|YP_003402279.1| - 3.6e-20 71.2 0.0 7.9e-20 70.1 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain Response_reg PF00072.19 gi|284164000|ref|YP_003402279.1| - 2.3e-17 62.9 0.1 9e-17 61.0 0.1 2.0 1 1 0 1 1 1 1 Response regulator receiver domain GAF_2 PF13185.1 gi|284164000|ref|YP_003402279.1| - 1.9e-15 57.6 1.2 3.2e-15 56.9 0.1 2.0 2 0 0 2 2 2 1 GAF domain GAF PF01590.21 gi|284164000|ref|YP_003402279.1| - 2.6e-10 40.6 0.0 7.6e-10 39.1 0.0 1.8 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.1 gi|284164000|ref|YP_003402279.1| - 0.00066 19.7 0.0 0.0022 18.0 0.0 2.0 2 0 0 2 2 2 1 GAF domain Sigma70_r4_2 PF08281.7 gi|284164000|ref|YP_003402279.1| - 0.0015 17.9 0.1 0.029 13.8 0.0 2.9 2 1 0 2 2 2 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|284164000|ref|YP_003402279.1| - 0.069 12.5 0.0 0.13 11.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Ferritin PF00210.19 gi|284164001|ref|YP_003402280.1| - 2.8e-27 95.2 9.3 3.3e-27 94.9 6.5 1.1 1 0 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.5 gi|284164001|ref|YP_003402280.1| - 0.009 16.2 1.6 0.15 12.3 0.0 2.4 1 1 1 2 2 2 1 Domain of unknown function (DUF2383) Serine_rich PF08824.5 gi|284164001|ref|YP_003402280.1| - 0.084 12.5 1.3 0.63 9.7 0.3 2.1 1 1 1 2 2 2 0 Serine rich protein interaction domain DUF1664 PF07889.7 gi|284164001|ref|YP_003402280.1| - 0.13 12.0 1.6 0.22 11.3 0.1 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF1664) CorA PF01544.13 gi|284164001|ref|YP_003402280.1| - 0.19 10.6 3.3 0.32 9.9 2.3 1.4 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF496 PF04363.7 gi|284164001|ref|YP_003402280.1| - 0.24 11.2 2.3 0.28 11.0 0.2 2.1 2 1 1 3 3 3 0 Protein of unknown function (DUF496) DUF1451 PF07295.6 gi|284164001|ref|YP_003402280.1| - 0.83 9.4 7.2 0.7 9.6 0.6 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1451) Fe_dep_repr_C PF02742.10 gi|284164001|ref|YP_003402280.1| - 0.96 9.1 6.7 3.6 7.3 0.7 3.1 3 0 0 3 3 3 0 Iron dependent repressor, metal binding and dimerisation domain Osmo_CC PF08946.5 gi|284164001|ref|YP_003402280.1| - 1.7 8.6 0.0 1.7 8.6 0.0 3.5 3 1 0 3 3 3 0 Osmosensory transporter coiled coil Fe_dep_repress PF01325.14 gi|284164002|ref|YP_003402281.1| - 4.6e-14 52.0 0.3 1.1e-13 50.9 0.0 1.7 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.2 gi|284164002|ref|YP_003402281.1| - 2.3e-07 30.3 0.0 4.9e-07 29.3 0.0 1.6 1 0 0 1 1 1 1 MarR family Fe_dep_repr_C PF02742.10 gi|284164002|ref|YP_003402281.1| - 0.00011 21.7 0.0 0.00018 21.0 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain HTH_27 PF13463.1 gi|284164002|ref|YP_003402281.1| - 0.00013 22.1 0.0 0.00026 21.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|284164002|ref|YP_003402281.1| - 0.0016 17.8 0.0 0.0038 16.5 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|284164002|ref|YP_003402281.1| - 0.0018 17.8 0.0 0.0032 17.0 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|284164002|ref|YP_003402281.1| - 0.0019 17.8 0.0 0.0034 17.0 0.0 1.4 1 0 0 1 1 1 1 MarR family LexA_DNA_bind PF01726.11 gi|284164002|ref|YP_003402281.1| - 0.0033 16.9 0.0 0.0068 15.9 0.0 1.7 1 0 0 1 1 1 1 LexA DNA binding domain HTH_20 PF12840.2 gi|284164002|ref|YP_003402281.1| - 0.0045 16.7 0.0 0.012 15.3 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|284164002|ref|YP_003402281.1| - 0.0047 16.6 0.0 0.013 15.2 0.0 1.8 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.16 gi|284164002|ref|YP_003402281.1| - 0.019 14.4 0.0 0.034 13.5 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Ribosomal_S19e PF01090.14 gi|284164002|ref|YP_003402281.1| - 0.033 13.6 0.0 0.051 12.9 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S19e Formyl_trans_N PF00551.14 gi|284164003|ref|YP_003402282.1| - 1.4e-08 34.4 0.0 1.9e-08 34.1 0.0 1.2 1 0 0 1 1 1 1 Formyl transferase ApbA PF02558.11 gi|284164004|ref|YP_003402283.1| - 5.3e-42 142.8 0.0 7.4e-42 142.3 0.0 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA ApbA_C PF08546.6 gi|284164004|ref|YP_003402283.1| - 2.4e-27 95.3 0.0 3.3e-27 94.9 0.0 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal NAD_Gly3P_dh_N PF01210.18 gi|284164004|ref|YP_003402283.1| - 9.4e-07 28.6 0.0 1.5e-06 28.0 0.0 1.3 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.12 gi|284164004|ref|YP_003402283.1| - 0.00047 20.5 0.0 0.0017 18.7 0.0 2.0 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.1 gi|284164004|ref|YP_003402283.1| - 0.019 14.9 0.1 0.043 13.8 0.0 1.7 1 0 0 1 1 1 0 NADH(P)-binding Pyr_redox PF00070.22 gi|284164004|ref|YP_003402283.1| - 0.05 14.0 0.4 0.25 11.7 0.2 2.2 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase DUF287 PF03384.9 gi|284164004|ref|YP_003402283.1| - 0.054 13.6 1.6 13 6.0 0.0 2.9 3 0 0 3 3 3 0 Drosophila protein of unknown function, DUF287 UDPG_MGDP_dh_N PF03721.9 gi|284164004|ref|YP_003402283.1| - 0.078 12.3 0.7 0.15 11.4 0.5 1.6 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Epimerase PF01370.16 gi|284164004|ref|YP_003402283.1| - 0.082 12.3 0.0 0.15 11.4 0.0 1.4 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family NAD_binding_2 PF03446.10 gi|284164004|ref|YP_003402283.1| - 0.1 12.4 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Glyco_trans_4_4 PF13579.1 gi|284164004|ref|YP_003402283.1| - 0.11 12.6 1.5 0.2 11.7 0.2 1.9 1 1 0 2 2 2 0 Glycosyl transferase 4-like domain Neuropeptide_S PF14993.1 gi|284164004|ref|YP_003402283.1| - 0.13 11.9 0.0 0.24 11.0 0.0 1.3 1 0 0 1 1 1 0 Neuropeptide S precursor protein Glyco_transf_28 PF03033.15 gi|284164004|ref|YP_003402283.1| - 0.13 12.0 0.0 0.28 10.9 0.0 1.6 1 0 0 1 1 1 0 Glycosyltransferase family 28 N-terminal domain NAD_binding_8 PF13450.1 gi|284164004|ref|YP_003402283.1| - 8.1 6.5 6.5 0.52 10.3 0.5 2.1 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain TGT_C2 PF14810.1 gi|284164005|ref|YP_003402284.1| - 1e-18 66.9 0.0 2.3e-18 65.7 0.0 1.6 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase TGT PF01702.13 gi|284164005|ref|YP_003402284.1| - 8.6e-17 61.2 0.0 1.4e-16 60.4 0.0 1.3 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase PUA PF01472.15 gi|284164005|ref|YP_003402284.1| - 9.2e-12 44.5 0.3 2.3e-11 43.2 0.2 1.6 1 0 0 1 1 1 1 PUA domain DUF1828 PF08861.5 gi|284164005|ref|YP_003402284.1| - 0.089 12.4 0.0 0.2 11.3 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function DUF1828 zf-ribbon_3 PF13248.1 gi|284164006|ref|YP_003402285.1| - 0.00017 20.7 2.5 0.088 12.0 0.1 2.1 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|284164006|ref|YP_003402285.1| - 0.00019 21.1 1.4 0.00019 21.1 1.0 1.1 1 0 0 1 1 1 1 Double zinc ribbon A2L_zn_ribbon PF08792.5 gi|284164006|ref|YP_003402285.1| - 0.00026 20.3 3.5 0.00036 19.8 2.4 1.3 1 1 0 1 1 1 1 A2L zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|284164006|ref|YP_003402285.1| - 0.00034 19.8 3.9 0.015 14.6 0.1 2.0 1 1 0 1 1 1 1 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.6 gi|284164006|ref|YP_003402285.1| - 0.00095 18.7 1.4 0.00097 18.7 1.0 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-C4_Topoisom PF01396.14 gi|284164006|ref|YP_003402285.1| - 0.0013 18.1 2.6 0.043 13.3 0.1 2.1 1 1 1 2 2 2 1 Topoisomerase DNA binding C4 zinc finger Nudix_N_2 PF14803.1 gi|284164006|ref|YP_003402285.1| - 0.0016 18.1 1.4 0.047 13.3 1.0 2.1 1 1 0 1 1 1 1 Nudix N-terminal zinc_ribbon_2 PF13240.1 gi|284164006|ref|YP_003402285.1| - 0.0047 16.3 4.5 0.043 13.3 3.0 2.0 1 1 1 2 2 2 2 zinc-ribbon domain HypA PF01155.14 gi|284164006|ref|YP_003402285.1| - 0.0048 16.5 0.8 0.0048 16.5 0.6 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family PhnA_Zn_Ribbon PF08274.7 gi|284164006|ref|YP_003402285.1| - 0.0055 16.4 3.2 0.0075 16.0 2.2 1.2 1 0 0 1 1 1 1 PhnA Zinc-Ribbon zf-C3HC4_3 PF13920.1 gi|284164006|ref|YP_003402285.1| - 0.0067 16.0 0.5 0.0071 15.9 0.4 1.1 1 0 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) Zn_Tnp_IS91 PF14319.1 gi|284164006|ref|YP_003402285.1| - 0.0068 15.9 1.6 0.0069 15.8 1.1 1.0 1 0 0 1 1 1 1 Transposase zinc-binding domain Sgf11 PF08209.6 gi|284164006|ref|YP_003402285.1| - 0.015 14.5 2.5 0.1 11.9 0.1 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) TFIIS_C PF01096.13 gi|284164006|ref|YP_003402285.1| - 0.021 14.4 3.5 0.07 12.7 0.2 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-IS66 PF13005.2 gi|284164006|ref|YP_003402285.1| - 0.022 14.7 3.7 1.1 9.2 0.2 2.1 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 RNHCP PF12647.2 gi|284164006|ref|YP_003402285.1| - 0.023 14.5 1.6 0.023 14.5 1.1 1.0 1 0 0 1 1 1 0 RNHCP domain Zn_Tnp_IS1595 PF12760.2 gi|284164006|ref|YP_003402285.1| - 0.025 14.3 3.8 0.67 9.7 2.7 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain GFA PF04828.9 gi|284164006|ref|YP_003402285.1| - 0.031 14.2 2.6 0.29 11.1 0.2 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme DUF1451 PF07295.6 gi|284164006|ref|YP_003402285.1| - 0.043 13.5 1.9 0.047 13.4 1.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) UPF0547 PF10571.4 gi|284164006|ref|YP_003402285.1| - 0.044 13.4 2.4 0.16 11.6 1.6 1.8 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 DUF4206 PF13901.1 gi|284164006|ref|YP_003402285.1| - 0.046 13.2 1.1 0.042 13.3 0.7 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4206) DNA_RNApol_7kD PF03604.8 gi|284164006|ref|YP_003402285.1| - 0.052 13.0 3.0 0.076 12.4 2.1 1.3 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Spt4 PF06093.8 gi|284164006|ref|YP_003402285.1| - 0.059 13.2 0.3 0.073 12.9 0.2 1.3 1 0 0 1 1 1 0 Spt4/RpoE2 zinc finger DUF2072 PF09845.4 gi|284164006|ref|YP_003402285.1| - 0.067 13.1 1.5 0.07 13.0 1.0 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) DUF35_N PF12172.3 gi|284164006|ref|YP_003402285.1| - 0.068 13.1 1.4 7.2 6.6 0.2 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) FYVE PF01363.16 gi|284164006|ref|YP_003402285.1| - 0.087 12.7 0.5 0.088 12.7 0.4 1.1 1 0 0 1 1 1 0 FYVE zinc finger Zn-ribbon_8 PF09723.5 gi|284164006|ref|YP_003402285.1| - 0.092 12.7 4.3 0.33 10.9 3.0 1.8 1 1 0 1 1 1 0 Zinc ribbon domain zf-Mss51 PF13824.1 gi|284164006|ref|YP_003402285.1| - 0.094 12.5 5.5 1.9 8.4 0.3 2.0 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 YhfH PF14149.1 gi|284164006|ref|YP_003402285.1| - 0.1 12.4 3.6 1.6 8.6 2.3 2.1 1 1 1 2 2 2 0 YhfH-like protein Prok-RING_1 PF14446.1 gi|284164006|ref|YP_003402285.1| - 0.13 12.0 2.6 0.19 11.4 1.8 1.4 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 zinc-ribbons_6 PF07191.7 gi|284164006|ref|YP_003402285.1| - 0.13 12.0 2.0 0.17 11.7 1.4 1.3 1 1 0 1 1 1 0 zinc-ribbons zf-RING_5 PF14634.1 gi|284164006|ref|YP_003402285.1| - 0.13 11.9 1.4 0.17 11.6 1.0 1.2 1 0 0 1 1 1 0 zinc-RING finger domain Zn_ribbon_recom PF13408.1 gi|284164006|ref|YP_003402285.1| - 0.16 12.2 0.9 0.16 12.2 0.6 1.9 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain Prim_Zn_Ribbon PF08273.7 gi|284164006|ref|YP_003402285.1| - 0.18 11.8 2.2 12 6.0 0.0 2.1 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase zf-NADH-PPase PF09297.6 gi|284164006|ref|YP_003402285.1| - 0.21 11.1 2.8 4.2 6.9 0.1 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Auto_anti-p27 PF06677.7 gi|284164006|ref|YP_003402285.1| - 0.24 11.1 3.7 0.66 9.7 2.5 1.7 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zinc_ribbon_5 PF13719.1 gi|284164006|ref|YP_003402285.1| - 0.26 10.8 1.6 9.1 5.9 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Ribosomal_L32p PF01783.18 gi|284164006|ref|YP_003402285.1| - 0.34 11.1 2.8 0.64 10.2 1.9 1.5 1 1 0 1 1 1 0 Ribosomal L32p protein family zf-trcl PF13451.1 gi|284164006|ref|YP_003402285.1| - 0.37 10.4 1.5 6.3 6.5 0.1 2.0 1 1 1 2 2 2 0 Probable zinc-binding domain Ogr_Delta PF04606.7 gi|284164006|ref|YP_003402285.1| - 0.49 10.0 5.1 0.56 9.9 0.2 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger ADK_lid PF05191.9 gi|284164006|ref|YP_003402285.1| - 0.56 9.9 5.9 5.7 6.6 4.1 2.0 1 1 0 1 1 1 0 Adenylate kinase, active site lid RNA_POL_M_15KD PF02150.11 gi|284164006|ref|YP_003402285.1| - 0.58 9.8 4.2 1.4 8.6 2.5 1.7 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit zf-ISL3 PF14690.1 gi|284164006|ref|YP_003402285.1| - 0.69 9.9 5.0 3 7.9 0.3 2.1 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-HIT PF04438.11 gi|284164006|ref|YP_003402285.1| - 0.96 9.1 5.5 0.99 9.1 0.7 2.1 2 0 0 2 2 2 0 HIT zinc finger DUF3797 PF12677.2 gi|284164006|ref|YP_003402285.1| - 1.1 8.9 6.5 3.3 7.3 0.6 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) FdhE PF04216.7 gi|284164006|ref|YP_003402285.1| - 1.7 8.3 4.5 7.9 6.1 3.2 1.7 1 1 0 1 1 1 0 Protein involved in formate dehydrogenase formation DNA_ligase_ZBD PF03119.11 gi|284164006|ref|YP_003402285.1| - 2 8.2 5.0 13 5.5 0.7 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain TerY-C PF15616.1 gi|284164006|ref|YP_003402285.1| - 2.2 8.2 5.0 2.6 7.9 0.1 1.9 1 1 1 2 2 2 0 TerY-C metal binding domain zf-tcix PF14952.1 gi|284164006|ref|YP_003402285.1| - 2.4 7.5 5.4 2.9 7.2 0.5 2.1 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding DUF1610 PF07754.6 gi|284164006|ref|YP_003402285.1| - 3.5 7.8 6.9 4.9 7.3 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-HYPF PF07503.7 gi|284164006|ref|YP_003402285.1| - 5.1 6.5 9.2 6.3 6.2 0.9 2.4 1 1 1 2 2 2 0 HypF finger CcmD PF04995.9 gi|284164007|ref|YP_003402286.1| - 0.023 14.4 0.4 0.038 13.7 0.2 1.4 1 0 0 1 1 1 0 Heme exporter protein D (CcmD) HTH_24 PF13412.1 gi|284164008|ref|YP_003402287.1| - 4.6e-13 48.3 0.1 1.4e-12 46.7 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|284164008|ref|YP_003402287.1| - 1.1e-12 47.2 0.4 2.5e-12 46.1 0.3 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|284164008|ref|YP_003402287.1| - 2.9e-07 30.0 0.0 3.8e-06 26.4 0.0 2.1 2 0 0 2 2 2 1 HTH domain HTH_20 PF12840.2 gi|284164008|ref|YP_003402287.1| - 2.7e-06 27.0 0.2 1.9e-05 24.3 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|284164008|ref|YP_003402287.1| - 2.4e-05 23.9 0.2 0.00081 19.0 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.1 gi|284164008|ref|YP_003402287.1| - 0.00021 21.5 0.1 0.00076 19.7 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain PaaX PF07848.7 gi|284164008|ref|YP_003402287.1| - 0.0015 18.4 0.2 0.38 10.7 0.0 2.3 2 0 0 2 2 2 1 PaaX-like protein HTH_CodY PF08222.6 gi|284164008|ref|YP_003402287.1| - 0.0022 17.2 0.3 0.0055 16.0 0.1 1.7 2 0 0 2 2 1 1 CodY helix-turn-helix domain TrmB PF01978.14 gi|284164008|ref|YP_003402287.1| - 0.0039 16.8 0.0 0.014 15.1 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.14 gi|284164008|ref|YP_003402287.1| - 0.0044 16.9 0.0 0.09 12.7 0.0 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_DeoR PF08220.7 gi|284164008|ref|YP_003402287.1| - 0.0052 16.2 0.0 0.012 15.1 0.0 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_28 PF13518.1 gi|284164008|ref|YP_003402287.1| - 0.0063 16.4 0.0 0.013 15.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain DDRGK PF09756.4 gi|284164008|ref|YP_003402287.1| - 0.0067 15.8 0.0 0.012 15.0 0.0 1.3 1 0 0 1 1 1 1 DDRGK domain HTH_30 PF13556.1 gi|284164008|ref|YP_003402287.1| - 0.012 15.1 0.1 0.037 13.6 0.1 1.9 2 0 0 2 2 1 0 PucR C-terminal helix-turn-helix domain HTH_23 PF13384.1 gi|284164008|ref|YP_003402287.1| - 0.014 14.9 0.1 0.025 14.2 0.1 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_Crp_2 PF13545.1 gi|284164008|ref|YP_003402287.1| - 0.022 14.5 0.1 0.077 12.8 0.0 1.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|284164008|ref|YP_003402287.1| - 0.023 14.1 0.1 0.067 12.6 0.0 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.1 gi|284164008|ref|YP_003402287.1| - 0.036 13.2 0.1 0.062 12.4 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 GntR PF00392.16 gi|284164008|ref|YP_003402287.1| - 0.038 13.4 2.0 0.1 12.0 0.0 2.5 3 0 0 3 3 3 0 Bacterial regulatory proteins, gntR family Rrf2 PF02082.15 gi|284164008|ref|YP_003402287.1| - 0.048 13.7 0.0 0.13 12.4 0.0 1.7 2 0 0 2 2 1 0 Transcriptional regulator HTH_10 PF04967.7 gi|284164008|ref|YP_003402287.1| - 0.066 12.8 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain DUF4423 PF14394.1 gi|284164008|ref|YP_003402287.1| - 0.075 12.5 0.0 0.25 10.8 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) HTH_36 PF13730.1 gi|284164008|ref|YP_003402287.1| - 0.1 12.7 0.0 0.22 11.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain TOBE PF03459.12 gi|284164008|ref|YP_003402287.1| - 2.7 8.1 5.5 0.67 10.1 0.7 2.1 2 1 0 2 2 2 0 TOBE domain TGT PF01702.13 gi|284164010|ref|YP_003402289.1| - 4.5e-47 160.3 0.0 6.1e-47 159.9 0.0 1.2 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase TGT_C1 PF14809.1 gi|284164010|ref|YP_003402289.1| - 0.057 13.2 0.1 3.2 7.6 0.0 2.4 2 0 0 2 2 2 0 C1 domain of tRNA-guanine transglycosylase dimerisation Pentapeptide_4 PF13599.1 gi|284164011|ref|YP_003402290.1| - 0.11 12.2 3.3 0.31 10.8 0.0 3.1 4 1 1 5 5 5 0 Pentapeptide repeats (9 copies) Pentapeptide_4 PF13599.1 gi|284164012|ref|YP_003402291.1| - 0.066 13.0 0.0 0.66 9.8 0.0 2.4 1 1 0 1 1 1 0 Pentapeptide repeats (9 copies) NUDIX PF00293.23 gi|284164013|ref|YP_003402292.1| - 1.6e-13 50.4 0.4 2.2e-13 50.0 0.3 1.1 1 0 0 1 1 1 1 NUDIX domain LysR_substrate PF03466.15 gi|284164013|ref|YP_003402292.1| - 0.071 12.1 0.2 0.14 11.2 0.1 1.5 1 1 0 1 1 1 0 LysR substrate binding domain PadR PF03551.9 gi|284164014|ref|YP_003402293.1| - 3.9e-13 48.9 0.2 4.7e-13 48.7 0.2 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|284164014|ref|YP_003402293.1| - 1.6e-05 25.1 0.0 2.3e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|284164014|ref|YP_003402293.1| - 0.00018 21.4 0.0 0.00025 21.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|284164014|ref|YP_003402293.1| - 0.00036 20.2 0.0 0.0021 17.8 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DUF1495 PF07381.6 gi|284164014|ref|YP_003402293.1| - 0.02 14.5 0.0 0.028 14.0 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) Penicillinase_R PF03965.11 gi|284164014|ref|YP_003402293.1| - 0.081 13.0 0.0 0.081 13.0 0.0 1.2 1 0 0 1 1 1 0 Penicillinase repressor DUF4364 PF14277.1 gi|284164014|ref|YP_003402293.1| - 0.1 12.2 0.0 0.16 11.5 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4364) DUF4397 PF14344.1 gi|284164016|ref|YP_003402295.1| - 3.1e-44 150.1 9.1 6.1e-22 78.2 0.7 3.6 2 1 1 3 3 3 3 Domain of unknown function (DUF4397) TAT_signal PF10518.4 gi|284164016|ref|YP_003402295.1| - 0.097 12.7 2.3 0.21 11.7 1.6 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence FliD_C PF07195.7 gi|284164017|ref|YP_003402296.1| - 0.13 11.5 0.0 7.1 5.8 0.0 2.2 2 0 0 2 2 2 0 Flagellar hook-associated protein 2 C-terminus DUF2580 PF10824.3 gi|284164017|ref|YP_003402296.1| - 0.17 12.2 2.1 17 5.8 0.1 3.6 3 1 0 3 3 3 0 Protein of unknown function (DUF2580) Polysacc_deac_1 PF01522.16 gi|284164018|ref|YP_003402297.1| - 3e-14 52.7 0.0 5e-14 51.9 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase TAT_signal PF10518.4 gi|284164019|ref|YP_003402298.1| - 0.0041 17.0 3.3 0.0064 16.4 2.3 1.3 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Herpes_LMP1 PF05297.6 gi|284164019|ref|YP_003402298.1| - 0.16 10.8 10.1 0.18 10.6 7.0 1.0 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) Daxx PF03344.10 gi|284164019|ref|YP_003402298.1| - 1.2 7.4 13.5 1.2 7.4 9.3 1.0 1 0 0 1 1 1 0 Daxx Family NOA36 PF06524.7 gi|284164019|ref|YP_003402298.1| - 9.6 5.3 8.8 9.9 5.3 6.1 1.1 1 0 0 1 1 1 0 NOA36 protein Pyridox_oxidase PF01243.15 gi|284164021|ref|YP_003402300.1| - 9.8e-17 60.7 0.0 1.2e-16 60.4 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.2 gi|284164021|ref|YP_003402300.1| - 3.1e-08 33.5 0.2 4.1e-08 33.1 0.1 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase HTH_24 PF13412.1 gi|284164023|ref|YP_003402302.1| - 7.5e-12 44.4 0.1 1.2e-11 43.7 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|284164023|ref|YP_003402302.1| - 2.4e-10 39.7 0.2 2.4e-10 39.7 0.1 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|284164023|ref|YP_003402302.1| - 4.2e-07 29.4 0.0 9.2e-07 28.4 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|284164023|ref|YP_003402302.1| - 4.6e-05 23.1 0.0 9.4e-05 22.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|284164023|ref|YP_003402302.1| - 0.00036 20.0 0.2 0.0017 17.8 0.0 2.1 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain MarR_2 PF12802.2 gi|284164023|ref|YP_003402302.1| - 0.0021 17.6 0.0 0.0047 16.5 0.0 1.6 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|284164023|ref|YP_003402302.1| - 0.0097 15.6 0.0 0.02 14.5 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.1 gi|284164023|ref|YP_003402302.1| - 0.028 14.4 0.0 0.055 13.4 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain TrmB PF01978.14 gi|284164023|ref|YP_003402302.1| - 0.096 12.4 0.0 0.22 11.2 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF1034 PF06280.7 gi|284164024|ref|YP_003402303.1| - 0.3 11.4 3.3 3.4 8.1 0.5 2.1 1 1 2 3 3 3 0 Fn3-like domain (DUF1034) TPP_enzyme_N PF02776.13 gi|284164025|ref|YP_003402304.1| - 1.7e-54 183.8 0.0 4.3e-54 182.5 0.0 1.7 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|284164025|ref|YP_003402304.1| - 5.4e-34 116.9 0.1 7.3e-33 113.3 0.0 2.4 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|284164025|ref|YP_003402304.1| - 1.1e-31 109.4 0.2 3.9e-31 107.6 0.1 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain Methyltrn_RNA_2 PF04013.7 gi|284164026|ref|YP_003402305.1| - 7.8e-56 188.7 0.0 8.8e-56 188.6 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase Lar_restr_allev PF14354.1 gi|284164027|ref|YP_003402306.1| - 0.16 12.2 1.0 0.23 11.8 0.7 1.3 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-TFIIB PF13453.1 gi|284164027|ref|YP_003402306.1| - 0.36 10.0 2.4 0.53 9.5 1.7 1.3 1 0 0 1 1 1 0 Transcription factor zinc-finger MtrF PF09472.5 gi|284164028|ref|YP_003402307.1| - 7.9 5.8 6.0 22 4.3 1.2 2.0 1 1 1 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) Trypsin_2 PF13365.1 gi|284164030|ref|YP_003402309.1| - 2e-18 66.4 0.4 3.9e-18 65.5 0.3 1.5 1 0 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.21 gi|284164030|ref|YP_003402309.1| - 1.6e-14 53.9 0.1 6.5e-14 52.0 0.1 1.9 1 1 0 1 1 1 1 Trypsin PDZ_2 PF13180.1 gi|284164030|ref|YP_003402309.1| - 1.8e-11 43.7 0.0 3.3e-11 42.9 0.0 1.5 1 0 0 1 1 1 1 PDZ domain Pico_P2A PF00947.14 gi|284164030|ref|YP_003402309.1| - 0.0066 16.2 0.0 0.015 15.0 0.0 1.5 1 0 0 1 1 1 1 Picornavirus core protein 2A UCR_Fe-S_N PF10399.4 gi|284164030|ref|YP_003402309.1| - 0.0086 15.2 0.1 0.022 13.9 0.1 1.7 1 0 0 1 1 1 1 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Tricorn_PDZ PF14685.1 gi|284164030|ref|YP_003402309.1| - 0.083 12.6 0.1 0.89 9.3 0.0 2.3 2 0 0 2 2 2 0 Tricorn protease PDZ domain THUMP PF02926.12 gi|284164031|ref|YP_003402310.1| - 4.2e-07 29.9 0.2 1.7e-06 27.9 0.0 2.0 2 0 0 2 2 2 1 THUMP domain DnaJ_CXXCXGXG PF00684.14 gi|284164031|ref|YP_003402310.1| - 0.0003 20.7 1.6 0.0047 16.9 0.4 2.9 3 0 0 3 3 3 1 DnaJ central domain RNase_HII PF01351.13 gi|284164032|ref|YP_003402311.1| - 1.3e-34 119.6 0.0 1.7e-34 119.2 0.0 1.1 1 0 0 1 1 1 1 Ribonuclease HII RuvA_C PF07499.8 gi|284164033|ref|YP_003402312.1| - 0.12 12.5 0.3 0.16 12.1 0.2 1.2 1 0 0 1 1 1 0 RuvA, C-terminal domain Na_Ca_ex PF01699.19 gi|284164034|ref|YP_003402313.1| - 6.2e-35 119.8 29.2 1e-18 67.2 10.1 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein SecD_SecF PF02355.11 gi|284164035|ref|YP_003402314.1| - 1.5e-14 53.6 6.0 3.1e-14 52.6 4.1 1.4 1 0 0 1 1 1 1 Protein export membrane protein MMPL PF03176.10 gi|284164035|ref|YP_003402314.1| - 0.0031 16.2 15.0 0.0067 15.1 10.4 1.5 1 0 0 1 1 1 1 MMPL family Sec_GG PF07549.9 gi|284164035|ref|YP_003402314.1| - 0.0083 15.2 0.0 0.024 13.8 0.0 1.8 1 0 0 1 1 1 1 SecD/SecF GG Motif SecD_SecF PF02355.11 gi|284164036|ref|YP_003402315.1| - 1.5e-32 112.3 9.8 1.5e-32 112.3 6.8 1.4 2 0 0 2 2 2 1 Protein export membrane protein Sec_GG PF07549.9 gi|284164036|ref|YP_003402315.1| - 4.7e-06 25.5 0.0 1e-05 24.4 0.0 1.6 1 0 0 1 1 1 1 SecD/SecF GG Motif ACR_tran PF00873.14 gi|284164036|ref|YP_003402315.1| - 0.0062 14.0 10.3 0.013 12.9 7.2 1.4 1 1 0 1 1 1 1 AcrB/AcrD/AcrF family RskA PF10099.4 gi|284164036|ref|YP_003402315.1| - 0.024 14.4 2.3 0.051 13.3 0.1 2.4 2 1 1 3 3 3 0 Anti-sigma-K factor rskA DFP PF04127.10 gi|284164036|ref|YP_003402315.1| - 0.035 13.7 0.1 0.056 13.0 0.0 1.3 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein Herpes_US9 PF06072.6 gi|284164036|ref|YP_003402315.1| - 0.33 10.8 0.0 0.33 10.8 0.0 3.7 4 0 0 4 4 4 0 Alphaherpesvirus tegument protein US9 Patched PF02460.13 gi|284164036|ref|YP_003402315.1| - 0.75 7.6 10.7 0.58 8.0 6.5 1.5 1 1 0 1 1 1 0 Patched family Response_reg PF00072.19 gi|284164040|ref|YP_003402319.1| - 5.3e-14 52.1 0.0 6.4e-14 51.9 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain TrmB PF01978.14 gi|284164041|ref|YP_003402320.1| - 2.7e-20 71.8 0.1 6.9e-20 70.5 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|284164041|ref|YP_003402320.1| - 6.5e-05 22.6 0.0 0.0013 18.5 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|284164041|ref|YP_003402320.1| - 0.00063 19.3 0.2 0.006 16.2 0.0 2.4 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.5 gi|284164041|ref|YP_003402320.1| - 0.0033 16.9 0.0 0.0092 15.5 0.0 1.8 1 0 0 1 1 1 1 IclR helix-turn-helix domain GntR PF00392.16 gi|284164041|ref|YP_003402320.1| - 0.0088 15.4 0.0 0.038 13.4 0.0 2.1 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family DUF2250 PF10007.4 gi|284164041|ref|YP_003402320.1| - 0.029 14.2 0.0 0.089 12.7 0.0 1.9 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) E2F_TDP PF02319.15 gi|284164041|ref|YP_003402320.1| - 0.044 13.3 0.0 0.08 12.5 0.0 1.5 1 0 0 1 1 1 0 E2F/DP family winged-helix DNA-binding domain PadR PF03551.9 gi|284164041|ref|YP_003402320.1| - 0.062 13.0 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|284164041|ref|YP_003402320.1| - 0.084 13.2 0.2 0.37 11.1 0.0 2.2 2 0 0 2 2 2 0 Winged helix DNA-binding domain Cdc6_C PF09079.6 gi|284164041|ref|YP_003402320.1| - 0.1 12.3 0.1 0.26 11.0 0.1 1.7 1 0 0 1 1 1 0 CDC6, C terminal PGI PF00342.14 gi|284164042|ref|YP_003402321.1| - 9e-53 179.3 0.0 1.4e-52 178.7 0.0 1.2 1 0 0 1 1 1 1 Phosphoglucose isomerase Abi PF02517.11 gi|284164043|ref|YP_003402322.1| - 2.1e-16 59.8 2.7 2.1e-16 59.8 1.8 3.0 2 1 0 2 2 2 1 CAAX protease self-immunity DUF2177 PF09945.4 gi|284164043|ref|YP_003402322.1| - 0.14 12.1 5.5 0.059 13.3 1.1 2.4 2 1 1 3 3 3 0 Predicted membrane protein (DUF2177) UPF0278 PF08745.6 gi|284164044|ref|YP_003402323.1| - 0.00063 19.0 1.0 0.00085 18.6 0.4 1.4 1 1 0 1 1 1 1 UPF0278 family Rad50_zn_hook PF04423.9 gi|284164044|ref|YP_003402323.1| - 0.0031 16.9 3.7 0.25 10.8 0.2 2.6 1 1 1 2 2 2 2 Rad50 zinc hook motif Zn_Tnp_IS1 PF03811.8 gi|284164044|ref|YP_003402323.1| - 0.0044 16.4 2.4 0.037 13.5 0.2 2.8 3 0 0 3 3 3 1 InsA N-terminal domain DUF3663 PF12404.3 gi|284164044|ref|YP_003402323.1| - 0.0054 16.4 0.0 0.015 15.0 0.0 1.7 1 0 0 1 1 1 1 Peptidase DZR PF12773.2 gi|284164044|ref|YP_003402323.1| - 0.0065 16.2 1.4 0.011 15.5 0.9 1.3 1 0 0 1 1 1 1 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|284164044|ref|YP_003402323.1| - 0.0085 16.0 6.0 0.1 12.5 4.1 2.3 1 1 0 1 1 1 1 Zinc ribbon domain zf-C3HC4_3 PF13920.1 gi|284164044|ref|YP_003402323.1| - 0.011 15.4 1.0 0.015 14.9 0.7 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DNA_ligase_ZBD PF03119.11 gi|284164044|ref|YP_003402323.1| - 0.011 15.3 2.2 0.023 14.3 0.2 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain SprT-like PF10263.4 gi|284164044|ref|YP_003402323.1| - 0.017 14.7 0.1 0.02 14.5 0.0 1.2 1 0 0 1 1 1 0 SprT-like family DUF4411 PF14367.1 gi|284164044|ref|YP_003402323.1| - 0.022 14.5 0.2 1.2 8.8 0.0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4411) HypA PF01155.14 gi|284164044|ref|YP_003402323.1| - 0.035 13.8 0.3 0.062 12.9 0.2 1.5 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family NOB1_Zn_bind PF08772.6 gi|284164044|ref|YP_003402323.1| - 0.037 13.8 0.4 0.065 13.0 0.3 1.4 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zinc-ribbons_6 PF07191.7 gi|284164044|ref|YP_003402323.1| - 0.042 13.6 0.9 0.075 12.8 0.6 1.4 1 0 0 1 1 1 0 zinc-ribbons CpXC PF14353.1 gi|284164044|ref|YP_003402323.1| - 0.064 13.2 1.5 0.26 11.2 0.0 2.4 2 1 1 3 3 3 0 CpXC protein zf-C2H2_4 PF13894.1 gi|284164044|ref|YP_003402323.1| - 0.11 12.8 1.3 12 6.5 0.1 2.5 1 1 1 2 2 2 0 C2H2-type zinc finger PIN_4 PF13638.1 gi|284164044|ref|YP_003402323.1| - 0.13 12.3 0.9 3 7.9 0.6 2.2 1 1 0 1 1 1 0 PIN domain PIN PF01850.16 gi|284164044|ref|YP_003402323.1| - 0.14 12.4 0.6 4.9 7.5 0.4 2.1 1 1 0 1 1 1 0 PIN domain zf-C2H2 PF00096.21 gi|284164044|ref|YP_003402323.1| - 0.16 12.3 3.2 1.2 9.5 0.2 2.4 1 1 1 2 2 2 0 Zinc finger, C2H2 type Ribosomal_L37e PF01907.14 gi|284164044|ref|YP_003402323.1| - 0.18 11.6 1.3 0.27 11.0 0.9 1.3 1 0 0 1 1 1 0 Ribosomal protein L37e Nudix_N_2 PF14803.1 gi|284164044|ref|YP_003402323.1| - 0.18 11.5 6.1 7.1 6.4 0.2 3.2 3 0 0 3 3 3 0 Nudix N-terminal Prok-RING_1 PF14446.1 gi|284164044|ref|YP_003402323.1| - 0.28 10.9 2.3 0.74 9.5 1.6 1.7 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 zf-RING_5 PF14634.1 gi|284164044|ref|YP_003402323.1| - 0.3 10.8 2.3 0.47 10.2 1.6 1.3 1 0 0 1 1 1 0 zinc-RING finger domain zf-C2HC_2 PF13913.1 gi|284164044|ref|YP_003402323.1| - 0.59 9.8 7.1 0.35 10.5 0.3 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type YhfH PF14149.1 gi|284164044|ref|YP_003402323.1| - 1.4 8.7 4.3 5.8 6.8 1.8 2.2 1 1 1 2 2 2 0 YhfH-like protein Rubredoxin PF00301.15 gi|284164044|ref|YP_003402323.1| - 1.7 8.5 4.9 51 3.8 3.4 2.4 1 1 0 1 1 1 0 Rubredoxin zinc_ribbon_2 PF13240.1 gi|284164044|ref|YP_003402323.1| - 2.4 7.7 4.8 8.7 5.9 0.2 2.4 1 1 0 2 2 2 0 zinc-ribbon domain PRC PF05239.11 gi|284164045|ref|YP_003402324.1| - 5.2e-12 45.4 0.2 5.8e-12 45.2 0.2 1.1 1 0 0 1 1 1 1 PRC-barrel domain GTP_EFTU PF00009.22 gi|284164046|ref|YP_003402325.1| - 8e-32 110.1 0.0 5.6e-31 107.4 0.0 2.2 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.3 gi|284164046|ref|YP_003402325.1| - 4.5e-24 84.4 3.5 8.5e-24 83.5 1.3 2.3 2 0 0 2 2 2 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.20 gi|284164046|ref|YP_003402325.1| - 4.2e-14 52.4 10.2 4.6e-11 42.6 0.2 3.0 3 0 0 3 3 3 2 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|284164046|ref|YP_003402325.1| - 2e-12 46.5 0.4 9.2e-12 44.4 0.1 2.3 2 0 0 2 2 2 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.18 gi|284164046|ref|YP_003402325.1| - 1.8e-06 27.9 0.0 4.4e-06 26.6 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|284164046|ref|YP_003402325.1| - 0.0012 19.2 0.0 0.0032 17.9 0.0 1.7 1 0 0 1 1 1 1 Miro-like protein Dynamin_N PF00350.18 gi|284164046|ref|YP_003402325.1| - 0.0033 17.2 0.2 0.27 11.0 0.0 2.7 2 0 0 2 2 2 1 Dynamin family ATP_bind_1 PF03029.12 gi|284164046|ref|YP_003402325.1| - 0.0044 16.5 0.0 0.014 14.9 0.0 1.8 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein SH3_9 PF14604.1 gi|284164046|ref|YP_003402325.1| - 0.19 11.3 1.4 9 5.9 0.0 2.8 3 0 0 3 3 3 0 Variant SH3 domain Cyclophil_like PF04126.8 gi|284164047|ref|YP_003402326.1| - 3.9e-29 100.6 0.0 4.3e-29 100.5 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin-like DUF3830 PF12903.2 gi|284164047|ref|YP_003402326.1| - 0.0015 17.9 0.0 0.0019 17.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3830) bPH_6 PF10756.4 gi|284164048|ref|YP_003402327.1| - 1.6e-05 24.6 2.3 4.3e-05 23.3 1.6 1.7 1 0 0 1 1 1 1 Bacterial PH domain DUF3483 PF11982.3 gi|284164048|ref|YP_003402327.1| - 1.1 8.4 12.5 0.099 11.9 3.9 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3483) CTP_synth_N PF06418.9 gi|284164050|ref|YP_003402329.1| - 1.4e-127 424.4 0.1 2e-127 424.0 0.1 1.1 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|284164050|ref|YP_003402329.1| - 2.1e-49 167.5 0.0 4.6e-49 166.4 0.0 1.6 2 0 0 2 2 2 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|284164050|ref|YP_003402329.1| - 9.5e-08 31.7 0.0 5.1e-07 29.3 0.0 2.0 1 1 1 2 2 2 1 Peptidase C26 CbiA PF01656.18 gi|284164050|ref|YP_003402329.1| - 2.7e-07 30.1 0.0 6e-07 29.0 0.0 1.6 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain GATase_3 PF07685.9 gi|284164050|ref|YP_003402329.1| - 0.073 12.6 0.0 0.16 11.5 0.0 1.6 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain GMP_synt_C PF00958.17 gi|284164051|ref|YP_003402330.1| - 2e-28 97.9 0.3 4.7e-28 96.7 0.1 1.7 2 0 0 2 2 2 1 GMP synthase C terminal domain NAD_synthase PF02540.12 gi|284164051|ref|YP_003402330.1| - 1.4e-09 37.1 0.0 2.9e-05 23.1 0.0 2.2 2 0 0 2 2 2 2 NAD synthase Asn_synthase PF00733.16 gi|284164051|ref|YP_003402330.1| - 2.2e-05 24.1 0.4 0.00036 20.1 0.0 2.5 2 1 0 3 3 3 1 Asparagine synthase tRNA_Me_trans PF03054.11 gi|284164051|ref|YP_003402330.1| - 2.9e-05 22.7 0.0 0.0013 17.3 0.0 2.2 2 0 0 2 2 2 1 tRNA methyl transferase PAPS_reduct PF01507.14 gi|284164051|ref|YP_003402330.1| - 0.0048 16.7 0.0 0.0089 15.8 0.0 1.5 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family ThiI PF02568.9 gi|284164051|ref|YP_003402330.1| - 0.013 14.9 0.0 0.049 13.0 0.0 1.9 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) QueC PF06508.8 gi|284164051|ref|YP_003402330.1| - 0.015 14.5 0.0 0.045 13.0 0.0 1.7 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC Arginosuc_synth PF00764.14 gi|284164051|ref|YP_003402330.1| - 0.026 13.5 0.0 0.04 12.9 0.0 1.2 1 0 0 1 1 1 0 Arginosuccinate synthase 5-FTHF_cyc-lig PF01812.15 gi|284164053|ref|YP_003402332.1| - 8.2e-22 77.8 0.0 1e-09 38.4 0.1 2.0 2 0 0 2 2 2 2 5-formyltetrahydrofolate cyclo-ligase family MoCF_biosynth PF00994.19 gi|284164054|ref|YP_003402333.1| - 4.5e-21 74.7 0.2 6.2e-21 74.3 0.1 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain ADH_zinc_N PF00107.21 gi|284164055|ref|YP_003402334.1| - 3.3e-38 130.1 0.0 5.3e-38 129.5 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|284164055|ref|YP_003402334.1| - 6.5e-19 69.0 0.0 1.2e-18 68.2 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|284164055|ref|YP_003402334.1| - 2.7e-17 62.5 0.0 5.7e-17 61.4 0.0 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain Eno-Rase_NADH_b PF12242.3 gi|284164055|ref|YP_003402334.1| - 0.0018 18.0 0.1 0.0035 17.0 0.1 1.4 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NAD_binding_10 PF13460.1 gi|284164055|ref|YP_003402334.1| - 0.0023 17.9 0.1 0.0039 17.2 0.1 1.6 1 1 0 1 1 1 1 NADH(P)-binding AlaDh_PNT_C PF01262.16 gi|284164055|ref|YP_003402334.1| - 0.016 14.7 0.3 0.15 11.6 0.0 2.2 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain RmlD_sub_bind PF04321.12 gi|284164055|ref|YP_003402334.1| - 0.074 11.9 0.0 0.66 8.8 0.0 2.0 1 1 1 2 2 2 0 RmlD substrate binding domain Semialdhyde_dh PF01118.19 gi|284164055|ref|YP_003402334.1| - 0.076 13.3 0.1 0.18 12.1 0.0 1.7 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain OPT PF03169.10 gi|284164056|ref|YP_003402335.1| - 0.024 13.0 0.0 0.026 12.9 0.0 1.0 1 0 0 1 1 1 0 OPT oligopeptide transporter protein Peptidase_M24 PF00557.19 gi|284164057|ref|YP_003402336.1| - 4e-15 55.9 0.5 5.1e-15 55.5 0.4 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|284164057|ref|YP_003402336.1| - 7.7e-05 23.1 0.0 0.00024 21.6 0.0 1.8 2 0 0 2 2 2 1 Creatinase/Prolidase N-terminal domain Sulfatase PF00884.18 gi|284164059|ref|YP_003402338.1| - 0.032 13.4 0.0 0.049 12.8 0.0 1.3 1 0 0 1 1 1 0 Sulfatase Methyltransf_24 PF13578.1 gi|284164060|ref|YP_003402339.1| - 8.4e-16 58.7 0.6 1.7e-15 57.7 0.1 1.7 2 0 0 2 2 2 1 Methyltransferase domain Prenyltrans_2 PF13249.1 gi|284164061|ref|YP_003402340.1| - 1.8e-10 41.2 0.4 5.5e-07 29.9 0.0 2.5 2 0 0 2 2 2 2 Prenyltransferase-like DUF608 PF04685.8 gi|284164061|ref|YP_003402340.1| - 0.0001 21.1 0.2 0.0003 19.6 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function, DUF608 Prenyltrans_1 PF13243.1 gi|284164061|ref|YP_003402340.1| - 0.00048 20.1 4.6 0.32 11.0 0.7 4.1 2 1 1 3 3 3 1 Prenyltransferase-like DUF642 PF04862.7 gi|284164061|ref|YP_003402340.1| - 0.066 12.8 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF642) TPR_14 PF13428.1 gi|284164061|ref|YP_003402340.1| - 0.67 10.7 6.3 7 7.5 0.0 3.9 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_16 PF13432.1 gi|284164061|ref|YP_003402340.1| - 0.86 10.3 10.0 2.3 8.9 0.2 3.5 4 0 0 4 4 4 0 Tetratricopeptide repeat Methyltransf_23 PF13489.1 gi|284164062|ref|YP_003402341.1| - 3.9e-28 98.1 0.0 6e-28 97.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|284164062|ref|YP_003402341.1| - 3.4e-25 88.3 0.0 5.7e-25 87.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|284164062|ref|YP_003402341.1| - 7.3e-23 80.8 0.0 9e-23 80.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|284164062|ref|YP_003402341.1| - 5e-16 58.9 0.1 8e-16 58.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|284164062|ref|YP_003402341.1| - 5.9e-16 58.7 0.0 9.9e-16 58.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|284164062|ref|YP_003402341.1| - 2.4e-15 57.0 0.1 5.1e-15 56.0 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|284164062|ref|YP_003402341.1| - 1.5e-13 50.8 0.5 1.5e-13 50.8 0.3 2.1 2 2 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|284164062|ref|YP_003402341.1| - 1.8e-13 50.1 0.0 4.6e-13 48.8 0.0 1.6 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family CMAS PF02353.15 gi|284164062|ref|YP_003402341.1| - 8.9e-10 38.0 0.0 1.4e-09 37.4 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MetW PF07021.7 gi|284164062|ref|YP_003402341.1| - 2.3e-06 27.1 0.0 4.6e-06 26.1 0.0 1.4 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_29 PF03141.11 gi|284164062|ref|YP_003402341.1| - 2.9e-06 25.9 0.0 3.6e-06 25.5 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase PCMT PF01135.14 gi|284164062|ref|YP_003402341.1| - 1.1e-05 25.0 0.0 1.4e-05 24.6 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_8 PF05148.10 gi|284164062|ref|YP_003402341.1| - 2.1e-05 24.2 0.1 0.0012 18.4 0.1 2.2 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_9 PF08003.6 gi|284164062|ref|YP_003402341.1| - 0.00013 20.7 0.0 0.00018 20.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) PrmA PF06325.8 gi|284164062|ref|YP_003402341.1| - 0.00027 20.1 0.0 0.00036 19.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.9 gi|284164062|ref|YP_003402341.1| - 0.0023 17.3 0.0 0.003 16.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain N6_N4_Mtase PF01555.13 gi|284164062|ref|YP_003402341.1| - 0.0046 16.4 0.0 0.89 8.9 0.0 2.2 2 0 0 2 2 2 1 DNA methylase Methyltransf_4 PF02390.12 gi|284164062|ref|YP_003402341.1| - 0.0066 15.5 0.0 0.0097 14.9 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Pox_MCEL PF03291.11 gi|284164062|ref|YP_003402341.1| - 0.0093 14.8 0.0 0.013 14.3 0.0 1.1 1 0 0 1 1 1 1 mRNA capping enzyme TPMT PF05724.6 gi|284164062|ref|YP_003402341.1| - 0.018 14.5 0.0 0.03 13.7 0.0 1.3 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) NodS PF05401.6 gi|284164062|ref|YP_003402341.1| - 0.019 14.3 0.0 0.031 13.6 0.0 1.3 1 0 0 1 1 1 0 Nodulation protein S (NodS) FtsJ PF01728.14 gi|284164062|ref|YP_003402341.1| - 0.037 14.0 0.0 0.051 13.5 0.0 1.2 1 0 0 1 1 1 0 FtsJ-like methyltransferase CheR PF01739.13 gi|284164062|ref|YP_003402341.1| - 0.04 13.1 0.0 2 7.6 0.0 2.4 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain NNMT_PNMT_TEMT PF01234.12 gi|284164062|ref|YP_003402341.1| - 0.054 12.4 0.0 1.8 7.4 0.0 2.1 1 1 1 2 2 2 0 NNMT/PNMT/TEMT family UPF0020 PF01170.13 gi|284164062|ref|YP_003402341.1| - 0.11 12.0 0.0 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 TPR_9 PF13371.1 gi|284164062|ref|YP_003402341.1| - 0.16 11.8 3.2 7.3 6.5 0.0 3.2 3 0 0 3 3 3 0 Tetratricopeptide repeat Glycos_transf_1 PF00534.15 gi|284164063|ref|YP_003402342.1| - 4.8e-35 120.4 0.0 6.5e-35 120.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|284164063|ref|YP_003402342.1| - 4.8e-20 72.3 3.7 4.8e-20 72.3 2.5 2.2 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|284164063|ref|YP_003402342.1| - 1.8e-19 70.2 0.2 5.2e-19 68.7 0.1 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|284164063|ref|YP_003402342.1| - 6.5e-17 61.8 0.0 4.4e-11 42.8 0.0 2.2 2 0 0 2 2 2 2 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|284164063|ref|YP_003402342.1| - 1.3e-14 54.1 0.0 2.5e-14 53.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_20 PF00982.16 gi|284164063|ref|YP_003402342.1| - 0.0041 15.6 0.0 0.006 15.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase family 20 NUDIX PF00293.23 gi|284164064|ref|YP_003402343.1| - 8.1e-12 44.9 0.4 1.1e-11 44.5 0.3 1.2 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|284164064|ref|YP_003402343.1| - 0.0027 17.1 0.1 0.0054 16.1 0.1 1.7 1 1 0 1 1 1 1 NUDIX domain DAGK_cat PF00781.19 gi|284164065|ref|YP_003402344.1| - 1.5e-20 72.9 1.2 2.7e-20 72.1 0.8 1.4 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain NAD_kinase PF01513.16 gi|284164065|ref|YP_003402344.1| - 0.0056 15.5 0.3 0.0083 14.9 0.2 1.3 1 0 0 1 1 1 1 ATP-NAD kinase PHP_C PF13263.1 gi|284164066|ref|YP_003402345.1| - 7.7e-21 73.3 0.4 3.6e-20 71.1 0.0 2.4 3 0 0 3 3 3 1 PHP-associated PHP PF02811.14 gi|284164066|ref|YP_003402345.1| - 0.0013 18.5 0.0 0.0068 16.2 0.0 2.1 1 1 0 1 1 1 1 PHP domain HTH_AsnC-type PF13404.1 gi|284164068|ref|YP_003402347.1| - 4e-19 67.8 1.7 1.7e-17 62.6 0.4 2.3 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|284164068|ref|YP_003402347.1| - 1.5e-15 56.2 0.1 9.1e-15 53.7 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|284164068|ref|YP_003402347.1| - 6.5e-10 38.5 1.1 6.5e-10 38.5 0.7 1.7 2 0 0 2 2 2 1 AsnC family HTH_Tnp_ISL3 PF13542.1 gi|284164068|ref|YP_003402347.1| - 0.00011 21.2 0.0 0.00027 20.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 Sigma70_r4_2 PF08281.7 gi|284164068|ref|YP_003402347.1| - 0.00014 21.2 0.0 0.0003 20.1 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 KorB PF08535.5 gi|284164068|ref|YP_003402347.1| - 0.00017 21.6 0.2 0.0078 16.3 0.0 2.1 1 1 1 2 2 2 1 KorB domain Sigma70_r4 PF04545.11 gi|284164068|ref|YP_003402347.1| - 0.00034 19.8 0.1 0.00057 19.1 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|284164068|ref|YP_003402347.1| - 0.00038 20.0 0.0 0.00072 19.1 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|284164068|ref|YP_003402347.1| - 0.00042 20.0 0.0 0.00068 19.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|284164068|ref|YP_003402347.1| - 0.0013 18.3 0.4 0.0036 16.9 0.0 1.9 2 1 1 3 3 3 1 HTH domain HTH_IclR PF09339.5 gi|284164068|ref|YP_003402347.1| - 0.0017 17.8 0.0 0.0028 17.1 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|284164068|ref|YP_003402347.1| - 0.0027 17.3 0.1 0.01 15.5 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.1 gi|284164068|ref|YP_003402347.1| - 0.0039 17.4 0.1 0.019 15.3 0.0 2.0 1 1 1 2 2 2 1 Winged helix DNA-binding domain HTH_DeoR PF08220.7 gi|284164068|ref|YP_003402347.1| - 0.0041 16.6 0.1 0.045 13.3 0.0 2.2 1 1 1 2 2 2 1 DeoR-like helix-turn-helix domain DUF746 PF05344.6 gi|284164068|ref|YP_003402347.1| - 0.0058 16.1 0.3 0.21 11.1 0.0 2.5 3 0 0 3 3 2 1 Domain of Unknown Function (DUF746) HTH_28 PF13518.1 gi|284164068|ref|YP_003402347.1| - 0.008 16.1 0.0 0.019 14.9 0.0 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|284164068|ref|YP_003402347.1| - 0.0081 15.7 0.0 0.014 15.0 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain DUF692 PF05114.8 gi|284164068|ref|YP_003402347.1| - 0.0093 14.9 0.2 0.011 14.6 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF692) GYD PF08734.6 gi|284164068|ref|YP_003402347.1| - 0.016 14.9 1.4 0.057 13.1 0.2 2.2 1 1 0 2 2 2 0 GYD domain GerE PF00196.14 gi|284164068|ref|YP_003402347.1| - 0.032 13.5 0.0 0.089 12.1 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family NapD PF03927.8 gi|284164068|ref|YP_003402347.1| - 0.039 13.7 0.6 0.069 12.9 0.4 1.4 1 0 0 1 1 1 0 NapD protein HrcA_DNA-bdg PF03444.10 gi|284164068|ref|YP_003402347.1| - 0.044 13.2 0.0 0.087 12.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_38 PF13936.1 gi|284164068|ref|YP_003402347.1| - 0.055 13.0 0.0 0.096 12.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.14 gi|284164068|ref|YP_003402347.1| - 0.064 12.9 0.0 0.086 12.5 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|284164068|ref|YP_003402347.1| - 0.08 12.6 0.0 0.19 11.4 0.0 1.6 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family CPSase_sm_chain PF00988.17 gi|284164069|ref|YP_003402348.1| - 3.4e-36 123.6 0.0 3.1e-35 120.5 0.0 2.3 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.23 gi|284164069|ref|YP_003402348.1| - 2.5e-34 118.3 0.0 3.8e-34 117.8 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|284164069|ref|YP_003402348.1| - 8.7e-08 31.8 0.3 3.2e-05 23.4 0.2 2.4 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.19 gi|284164069|ref|YP_003402348.1| - 0.00037 19.9 0.2 0.00089 18.7 0.0 1.9 2 0 0 2 2 2 1 DJ-1/PfpI family NapD PF03927.8 gi|284164069|ref|YP_003402348.1| - 0.085 12.6 0.4 0.19 11.5 0.3 1.6 1 0 0 1 1 1 0 NapD protein Pro-kuma_activ PF09286.6 gi|284164069|ref|YP_003402348.1| - 0.15 12.1 0.0 0.26 11.3 0.0 1.3 1 0 0 1 1 1 0 Pro-kumamolisin, activation domain Peripla_BP_2 PF01497.13 gi|284164070|ref|YP_003402349.1| - 1e-15 57.5 0.0 1.4e-15 57.0 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.4 gi|284164070|ref|YP_003402349.1| - 0.035 14.1 1.2 0.071 13.1 0.8 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF3437 PF11919.3 gi|284164070|ref|YP_003402349.1| - 0.062 13.0 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3437) TPR_7 PF13176.1 gi|284164070|ref|YP_003402349.1| - 0.11 12.3 0.0 0.3 10.9 0.0 1.7 1 0 0 1 1 1 0 Tetratricopeptide repeat Pyr_redox_2 PF07992.9 gi|284164071|ref|YP_003402350.1| - 2.1e-06 27.7 0.8 1e-05 25.5 0.1 2.2 1 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|284164071|ref|YP_003402350.1| - 1.1e-05 24.5 0.8 1.6e-05 23.9 0.1 1.6 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|284164071|ref|YP_003402350.1| - 1.7e-05 23.8 2.0 0.00028 19.8 0.1 2.3 2 0 0 2 2 2 1 FAD binding domain FAD_binding_3 PF01494.14 gi|284164071|ref|YP_003402350.1| - 1.8e-05 23.9 0.1 3.6e-05 22.9 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|284164071|ref|YP_003402350.1| - 0.0002 20.3 0.3 0.0002 20.3 0.2 2.8 2 1 0 2 2 2 1 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|284164071|ref|YP_003402350.1| - 0.00022 20.4 2.9 0.00067 18.8 0.5 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|284164071|ref|YP_003402350.1| - 0.00032 20.6 0.1 0.00082 19.3 0.1 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|284164071|ref|YP_003402350.1| - 0.0014 17.2 0.1 0.0023 16.4 0.0 1.3 1 0 0 1 1 1 1 HI0933-like protein Thi4 PF01946.12 gi|284164071|ref|YP_003402350.1| - 0.0097 15.0 0.1 0.024 13.7 0.1 1.6 1 0 0 1 1 1 1 Thi4 family Pyr_redox PF00070.22 gi|284164071|ref|YP_003402350.1| - 0.024 15.0 0.1 0.06 13.7 0.1 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|284164071|ref|YP_003402350.1| - 0.081 12.5 0.9 0.28 10.8 0.0 2.0 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Peripla_BP_2 PF01497.13 gi|284164072|ref|YP_003402351.1| - 9.1e-16 57.7 0.0 1.2e-15 57.2 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.4 gi|284164072|ref|YP_003402351.1| - 0.1 12.6 1.2 0.2 11.7 0.8 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence PALP PF00291.20 gi|284164073|ref|YP_003402352.1| - 2.7e-53 181.2 1.3 3.1e-53 181.0 0.9 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ADH_zinc_N PF00107.21 gi|284164073|ref|YP_003402352.1| - 0.0017 17.9 0.5 0.0063 16.0 0.3 1.9 1 1 0 1 1 1 1 Zinc-binding dehydrogenase FAM176 PF14851.1 gi|284164074|ref|YP_003402353.1| - 5.4 6.6 6.2 14 5.3 1.3 2.4 2 0 0 2 2 2 0 FAM176 family AICARFT_IMPCHas PF01808.13 gi|284164075|ref|YP_003402354.1| - 5.3e-85 285.2 0.0 7.1e-85 284.8 0.0 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme Formyl_trans_N PF00551.14 gi|284164075|ref|YP_003402354.1| - 1.3e-34 119.3 0.0 4.4e-33 114.3 0.0 2.4 1 1 0 1 1 1 1 Formyl transferase Toxin_25 PF08095.6 gi|284164075|ref|YP_003402354.1| - 0.12 12.1 0.2 0.3 10.8 0.1 1.7 1 0 0 1 1 1 0 Hefutoxin family Lyase_1 PF00206.15 gi|284164076|ref|YP_003402355.1| - 6.1e-51 173.4 0.0 9.5e-51 172.8 0.0 1.3 1 0 0 1 1 1 1 Lyase ASL_C PF08328.6 gi|284164076|ref|YP_003402355.1| - 1.1e-40 138.0 0.0 2e-40 137.1 0.0 1.5 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminal Abi PF02517.11 gi|284164077|ref|YP_003402356.1| - 1.7e-15 56.9 3.0 1.7e-15 56.9 2.1 2.7 2 1 0 2 2 2 1 CAAX protease self-immunity DUF1453 PF07301.6 gi|284164078|ref|YP_003402357.1| - 0.019 14.8 0.0 0.032 14.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1453) BofA PF07441.6 gi|284164078|ref|YP_003402357.1| - 0.02 14.8 0.4 0.02 14.8 0.2 2.3 2 0 0 2 2 2 0 SigmaK-factor processing regulatory protein BofA DUF2298 PF10060.4 gi|284164078|ref|YP_003402357.1| - 0.25 10.1 8.7 0.34 9.7 6.0 1.2 1 0 0 1 1 1 0 Uncharacterized membrane protein (DUF2298) DUF4131 PF13567.1 gi|284164078|ref|YP_003402357.1| - 6.5 6.1 9.8 1.2e+02 1.9 6.8 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) Peptidase_M20 PF01546.23 gi|284164079|ref|YP_003402358.1| - 1.1e-26 93.5 0.7 1.5e-26 93.0 0.5 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|284164079|ref|YP_003402358.1| - 8.7e-17 60.8 0.1 1.7e-16 59.9 0.1 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain DAP_epimerase PF01678.14 gi|284164080|ref|YP_003402359.1| - 1.6e-39 134.5 0.4 9e-20 70.7 0.2 2.1 2 0 0 2 2 2 2 Diaminopimelate epimerase PhzC-PhzF PF02567.11 gi|284164080|ref|YP_003402359.1| - 2.9e-05 23.4 0.0 0.00024 20.4 0.0 1.8 1 1 1 2 2 2 2 Phenazine biosynthesis-like protein Orn_Arg_deC_N PF02784.11 gi|284164081|ref|YP_003402360.1| - 2.3e-43 148.2 0.0 3e-43 147.8 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|284164081|ref|YP_003402360.1| - 3.8e-20 71.7 0.0 6.3e-20 71.0 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.15 gi|284164081|ref|YP_003402360.1| - 2.5e-08 33.7 0.1 4.5e-08 32.9 0.0 1.4 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain Radical_SAM PF04055.16 gi|284164081|ref|YP_003402360.1| - 0.00079 19.6 0.8 0.0051 16.9 0.1 2.4 2 1 0 2 2 2 1 Radical SAM superfamily THDPS_N_2 PF14805.1 gi|284164082|ref|YP_003402361.1| - 1.4e-17 63.3 0.3 2.1e-17 62.7 0.2 1.3 1 0 0 1 1 1 1 Tetrahydrodipicolinate N-succinyltransferase N-terminal Hexapep PF00132.19 gi|284164082|ref|YP_003402361.1| - 1e-12 46.9 9.6 4.3e-05 22.8 0.1 3.4 2 1 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|284164082|ref|YP_003402361.1| - 2.7e-09 36.4 11.3 6.7e-06 25.5 0.4 3.4 3 0 0 3 3 3 3 Hexapeptide repeat of succinyl-transferase DapB_C PF05173.9 gi|284164083|ref|YP_003402362.1| - 6.9e-38 129.4 0.2 9.6e-38 128.9 0.2 1.2 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.15 gi|284164083|ref|YP_003402362.1| - 7.6e-26 90.4 0.2 1.3e-25 89.6 0.1 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dh PF01118.19 gi|284164083|ref|YP_003402362.1| - 0.00026 21.2 0.1 0.00049 20.4 0.1 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|284164083|ref|YP_003402362.1| - 0.00032 20.7 2.2 0.00057 19.9 1.5 1.5 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|284164083|ref|YP_003402362.1| - 0.00074 18.8 0.0 0.0011 18.3 0.0 1.4 1 0 0 1 1 1 1 NmrA-like family NAD_binding_3 PF03447.11 gi|284164083|ref|YP_003402362.1| - 0.0038 17.6 0.1 0.0075 16.6 0.1 1.5 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain CoA_binding PF02629.14 gi|284164083|ref|YP_003402362.1| - 0.0078 16.7 2.1 0.015 15.7 0.3 2.1 2 1 1 3 3 3 1 CoA binding domain GFO_IDH_MocA PF01408.17 gi|284164083|ref|YP_003402362.1| - 0.017 15.6 0.1 0.031 14.8 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Saccharop_dh PF03435.13 gi|284164083|ref|YP_003402362.1| - 0.049 12.6 0.1 0.074 12.0 0.1 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase RmlD_sub_bind PF04321.12 gi|284164083|ref|YP_003402362.1| - 0.054 12.3 0.1 0.086 11.7 0.1 1.3 1 0 0 1 1 1 0 RmlD substrate binding domain Gp_dh_N PF00044.19 gi|284164083|ref|YP_003402362.1| - 0.072 13.0 0.2 0.17 11.8 0.1 1.9 1 1 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DHDPS PF00701.17 gi|284164084|ref|YP_003402363.1| - 1.3e-92 309.4 0.0 1.5e-92 309.2 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family ThiG PF05690.9 gi|284164084|ref|YP_003402363.1| - 0.012 14.6 0.1 0.02 13.9 0.0 1.2 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|284164084|ref|YP_003402363.1| - 0.066 12.3 0.8 0.11 11.6 0.6 1.3 1 0 0 1 1 1 0 Nitronate monooxygenase Peptidase_M48 PF01435.13 gi|284164085|ref|YP_003402364.1| - 2e-35 122.3 0.0 2.5e-35 122.0 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|284164085|ref|YP_003402364.1| - 2.4e-05 23.4 0.2 5.4e-05 22.3 0.0 1.6 2 0 0 2 2 2 1 BlaR1 peptidase M56 Peptidase_MA_2 PF13485.1 gi|284164085|ref|YP_003402364.1| - 0.04 13.9 0.0 0.087 12.8 0.0 1.7 2 0 0 2 2 2 0 Peptidase MA superfamily Mem_trans PF03547.13 gi|284164085|ref|YP_003402364.1| - 0.048 11.9 0.1 0.048 11.9 0.0 1.4 2 0 0 2 2 2 0 Membrane transport protein KduI PF04962.7 gi|284164085|ref|YP_003402364.1| - 0.073 12.1 0.1 0.11 11.5 0.1 1.2 1 0 0 1 1 1 0 KduI/IolB family NYN PF01936.13 gi|284164086|ref|YP_003402365.1| - 6.7e-38 130.2 0.2 8e-38 129.9 0.1 1.0 1 0 0 1 1 1 1 NYN domain Propep_M14 PF02244.11 gi|284164086|ref|YP_003402365.1| - 0.13 11.9 0.0 0.32 10.6 0.0 1.7 2 0 0 2 2 2 0 Carboxypeptidase activation peptide FMO-like PF00743.14 gi|284164086|ref|YP_003402365.1| - 0.15 10.1 0.0 0.21 9.7 0.0 1.1 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like DUF308 PF03729.8 gi|284164087|ref|YP_003402366.1| - 0.00094 19.1 3.9 0.0011 18.8 2.7 1.1 1 0 0 1 1 1 1 Short repeat of unknown function (DUF308) CD20 PF04103.10 gi|284164087|ref|YP_003402366.1| - 0.0029 17.5 3.0 0.0033 17.3 2.0 1.1 1 0 0 1 1 1 1 CD20-like family PIRT PF15099.1 gi|284164087|ref|YP_003402366.1| - 0.0066 15.6 1.8 0.0072 15.5 1.3 1.0 1 0 0 1 1 1 1 Phosphoinositide-interacting protein family DUF2892 PF11127.3 gi|284164087|ref|YP_003402366.1| - 0.013 15.2 6.3 0.017 14.9 4.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) YiaAB PF05360.9 gi|284164087|ref|YP_003402366.1| - 0.033 13.7 5.7 0.18 11.3 0.2 2.2 2 0 0 2 2 2 0 yiaA/B two helix domain DUF2062 PF09835.4 gi|284164087|ref|YP_003402366.1| - 0.035 13.7 3.5 0.039 13.5 2.4 1.0 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2062) IncA PF04156.9 gi|284164087|ref|YP_003402366.1| - 0.05 13.2 4.9 0.052 13.1 3.4 1.0 1 0 0 1 1 1 0 IncA protein DUF1469 PF07332.6 gi|284164087|ref|YP_003402366.1| - 0.5 10.0 3.5 0.55 9.9 2.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) DUF872 PF05915.7 gi|284164087|ref|YP_003402366.1| - 0.87 9.4 5.3 3.9 7.3 0.2 2.0 1 1 1 2 2 2 0 Eukaryotic protein of unknown function (DUF872) DUF373 PF04123.8 gi|284164087|ref|YP_003402366.1| - 1.9 7.4 3.7 2 7.3 2.6 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF373) Got1 PF04178.7 gi|284164087|ref|YP_003402366.1| - 2.2 8.4 6.5 3.9 7.6 4.5 1.4 1 1 0 1 1 1 0 Got1/Sft2-like family DUF2061 PF09834.4 gi|284164087|ref|YP_003402366.1| - 5.1 7.3 5.5 2.9 8.1 0.5 2.1 1 1 1 2 2 2 0 Predicted membrane protein (DUF2061) DUF3185 PF11381.3 gi|284164087|ref|YP_003402366.1| - 7.4 6.4 7.6 3.7e+02 0.9 5.3 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF3185) TGT_C2 PF14810.1 gi|284164088|ref|YP_003402367.1| - 8.9e-28 95.9 0.0 1.7e-27 95.0 0.0 1.5 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|284164088|ref|YP_003402367.1| - 1.8e-17 62.8 0.3 2.7e-17 62.2 0.2 1.3 1 0 0 1 1 1 1 PUA domain NAC PF01849.13 gi|284164089|ref|YP_003402368.1| - 6.4e-15 54.4 0.3 8.8e-15 53.9 0.2 1.2 1 0 0 1 1 1 1 NAC domain UBA PF00627.26 gi|284164089|ref|YP_003402368.1| - 6.2e-06 25.8 0.2 6.2e-06 25.8 0.1 2.2 2 0 0 2 2 2 1 UBA/TS-N domain UBA_4 PF14555.1 gi|284164089|ref|YP_003402368.1| - 0.00018 20.9 0.2 0.00038 19.9 0.1 1.6 1 0 0 1 1 1 1 UBA-like domain DUF3606 PF12244.3 gi|284164089|ref|YP_003402368.1| - 0.031 13.9 0.2 0.057 13.0 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3606) Fucose_iso_N2 PF07882.7 gi|284164089|ref|YP_003402368.1| - 0.053 13.1 0.1 0.067 12.8 0.0 1.2 1 0 0 1 1 1 0 L-fucose isomerase, second N-terminal domain CUE PF02845.11 gi|284164089|ref|YP_003402368.1| - 0.071 12.6 0.1 0.2 11.1 0.1 1.8 1 0 0 1 1 1 0 CUE domain DUF937 PF06078.6 gi|284164089|ref|YP_003402368.1| - 0.08 13.1 0.8 6.3 7.0 0.2 2.2 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF937) Methyltransf_18 PF12847.2 gi|284164090|ref|YP_003402369.1| - 6.8e-15 55.6 0.1 1.3e-14 54.7 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|284164090|ref|YP_003402369.1| - 2.6e-14 53.2 0.6 1.7e-13 50.5 0.4 2.1 1 1 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.5 gi|284164090|ref|YP_003402369.1| - 1e-13 51.3 0.0 2.7e-11 43.4 0.0 2.1 1 1 1 2 2 2 2 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.1 gi|284164090|ref|YP_003402369.1| - 1.9e-10 40.5 0.0 2.4e-10 40.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|284164090|ref|YP_003402369.1| - 1.6e-08 34.0 0.1 2.2e-08 33.5 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.9 gi|284164090|ref|YP_003402369.1| - 5e-08 32.4 0.1 1.7e-07 30.7 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_24 PF13578.1 gi|284164090|ref|YP_003402369.1| - 1.3e-06 29.1 0.1 3.4e-06 27.8 0.1 1.6 2 0 0 2 2 1 1 Methyltransferase domain PCMT PF01135.14 gi|284164090|ref|YP_003402369.1| - 2.8e-06 27.0 0.1 3.9e-06 26.5 0.1 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.15 gi|284164090|ref|YP_003402369.1| - 9.5e-06 24.8 0.0 1.4e-05 24.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_3 PF01596.12 gi|284164090|ref|YP_003402369.1| - 9.7e-06 24.7 0.0 1.3e-05 24.3 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_11 PF08241.7 gi|284164090|ref|YP_003402369.1| - 3.4e-05 24.2 0.1 6.2e-05 23.4 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|284164090|ref|YP_003402369.1| - 5e-05 23.0 0.0 9.8e-05 22.1 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|284164090|ref|YP_003402369.1| - 0.0012 18.0 0.0 0.0014 17.7 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_15 PF09445.5 gi|284164090|ref|YP_003402369.1| - 0.0014 18.1 0.0 0.0019 17.7 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Phage_sheath_1 PF04984.9 gi|284164090|ref|YP_003402369.1| - 0.0028 16.1 0.1 0.0037 15.7 0.0 1.1 1 0 0 1 1 1 1 Phage tail sheath protein Cons_hypoth95 PF03602.10 gi|284164090|ref|YP_003402369.1| - 0.0034 16.7 0.0 0.0047 16.3 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Met_10 PF02475.11 gi|284164090|ref|YP_003402369.1| - 0.0034 16.9 0.0 0.0045 16.5 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_12 PF08242.7 gi|284164090|ref|YP_003402369.1| - 0.0068 16.8 0.1 0.014 15.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain ADH_zinc_N PF00107.21 gi|284164090|ref|YP_003402369.1| - 0.0087 15.6 0.2 0.013 15.0 0.1 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase UPF0020 PF01170.13 gi|284164090|ref|YP_003402369.1| - 0.08 12.5 0.1 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 3HCDH_N PF02737.13 gi|284164090|ref|YP_003402369.1| - 0.1 12.2 0.1 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Methyltransf_25 PF13649.1 gi|284164090|ref|YP_003402369.1| - 0.13 12.6 0.0 0.18 12.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_16 PF10294.4 gi|284164090|ref|YP_003402369.1| - 0.17 11.3 0.0 0.26 10.7 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase PPDK_N PF01326.14 gi|284164091|ref|YP_003402370.1| - 5.6e-107 357.5 4.0 9.3e-107 356.8 2.8 1.3 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|284164091|ref|YP_003402370.1| - 1.8e-81 273.2 0.1 2.5e-81 272.7 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|284164091|ref|YP_003402370.1| - 5.1e-28 96.4 1.6 1.5e-27 94.9 1.1 1.9 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain RNA_POL_M_15KD PF02150.11 gi|284164092|ref|YP_003402371.1| - 0.063 12.9 2.4 0.087 12.5 0.3 1.9 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit HTH_10 PF04967.7 gi|284164093|ref|YP_003402372.1| - 2.6e-14 52.5 0.1 4.4e-14 51.7 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_3 PF01381.17 gi|284164093|ref|YP_003402372.1| - 0.0014 18.4 0.0 0.0025 17.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix MarR_2 PF12802.2 gi|284164093|ref|YP_003402372.1| - 0.017 14.7 0.0 0.03 13.9 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_38 PF13936.1 gi|284164093|ref|YP_003402372.1| - 0.039 13.4 0.1 0.13 11.8 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_AraC PF00165.18 gi|284164093|ref|YP_003402372.1| - 0.09 12.6 0.0 0.19 11.5 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family Glyco_tranf_2_3 PF13641.1 gi|284164094|ref|YP_003402373.1| - 4e-30 105.2 0.6 5.7e-30 104.8 0.4 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.21 gi|284164094|ref|YP_003402373.1| - 6.6e-17 61.6 0.0 8.6e-17 61.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.1 gi|284164094|ref|YP_003402373.1| - 4e-15 56.0 0.7 7.7e-15 55.1 0.5 1.4 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|284164094|ref|YP_003402373.1| - 4e-11 42.5 0.0 5.9e-11 41.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.4 gi|284164094|ref|YP_003402373.1| - 0.00018 20.6 0.0 0.24 10.4 0.0 2.0 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Pyridoxal_deC PF00282.14 gi|284164095|ref|YP_003402374.1| - 1.8e-28 99.1 0.0 3.2e-28 98.2 0.0 1.4 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.14 gi|284164095|ref|YP_003402374.1| - 1.2e-13 50.5 0.0 1.6e-13 50.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|284164095|ref|YP_003402374.1| - 8.5e-06 25.1 0.0 1.4e-05 24.3 0.0 1.3 1 1 0 1 1 1 1 Beta-eliminating lyase SHMT PF00464.14 gi|284164095|ref|YP_003402374.1| - 1.5e-05 23.5 0.0 3.3e-05 22.4 0.0 1.4 1 1 0 1 1 1 1 Serine hydroxymethyltransferase DegT_DnrJ_EryC1 PF01041.12 gi|284164095|ref|YP_003402374.1| - 0.0094 15.0 0.1 0.014 14.4 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family tRNA-synt_1g PF09334.6 gi|284164098|ref|YP_003402377.1| - 2.7e-138 460.8 0.0 3.3e-138 460.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.15 gi|284164098|ref|YP_003402377.1| - 2.8e-21 75.1 0.1 4.6e-21 74.4 0.1 1.4 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.17 gi|284164098|ref|YP_003402377.1| - 4.1e-15 54.8 1.1 1.2e-08 33.4 0.1 3.1 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.14 gi|284164098|ref|YP_003402377.1| - 5.1e-09 35.6 0.0 3.3e-06 26.4 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Anticodon_1 PF08264.8 gi|284164098|ref|YP_003402377.1| - 1.4e-06 28.0 0.0 2.7e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1d PF00750.14 gi|284164098|ref|YP_003402377.1| - 0.00052 18.9 0.2 0.18 10.5 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (R) tRNA-synt_1f PF01921.13 gi|284164098|ref|YP_003402377.1| - 0.0024 16.5 0.2 0.32 9.6 0.0 2.9 3 0 0 3 3 3 1 tRNA synthetases class I (K) DUF2423 PF10338.4 gi|284164098|ref|YP_003402377.1| - 0.07 13.1 0.3 0.13 12.3 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2423) HAD_2 PF13419.1 gi|284164099|ref|YP_003402378.1| - 2.3e-30 106.1 0.0 2.6e-30 105.9 0.0 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|284164099|ref|YP_003402378.1| - 2.4e-12 47.7 0.9 2.3e-11 44.5 0.6 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|284164099|ref|YP_003402378.1| - 2.3e-11 43.2 0.1 4.2e-11 42.4 0.1 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.2 gi|284164099|ref|YP_003402378.1| - 0.006 16.7 0.0 0.0075 16.4 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase adh_short PF00106.20 gi|284164100|ref|YP_003402379.1| - 0.0026 17.6 0.6 0.0043 16.9 0.4 1.3 1 0 0 1 1 1 1 short chain dehydrogenase DHQS PF01959.11 gi|284164103|ref|YP_003402382.1| - 2.3e-147 490.3 5.6 2.8e-147 490.0 3.9 1.1 1 0 0 1 1 1 1 3-dehydroquinate synthase (EC 4.6.1.3) QRPTase_C PF01729.14 gi|284164103|ref|YP_003402382.1| - 0.0025 17.3 0.7 0.05 13.1 0.1 2.4 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain Hint PF01079.15 gi|284164103|ref|YP_003402382.1| - 0.0028 16.9 0.1 0.022 13.9 0.0 2.2 3 0 0 3 3 3 1 Hint module Hint_2 PF13403.1 gi|284164103|ref|YP_003402382.1| - 0.014 15.3 1.9 0.64 9.9 0.1 2.8 3 0 0 3 3 3 0 Hint domain DUF4237 PF14021.1 gi|284164103|ref|YP_003402382.1| - 0.052 13.8 0.0 0.13 12.5 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF4237) Complex1_51K PF01512.12 gi|284164104|ref|YP_003402383.1| - 4e-23 81.7 0.0 6.3e-23 81.1 0.0 1.3 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit RnfC_N PF13375.1 gi|284164104|ref|YP_003402383.1| - 1.2e-06 28.1 0.0 2.1e-06 27.3 0.0 1.5 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain SLBB PF10531.4 gi|284164104|ref|YP_003402383.1| - 2.7e-05 23.9 0.0 6.8e-05 22.6 0.0 1.7 1 0 0 1 1 1 1 SLBB domain zf-ribbon_3 PF13248.1 gi|284164106|ref|YP_003402385.1| - 8.5e-07 27.9 0.7 1.2e-06 27.4 0.5 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|284164106|ref|YP_003402385.1| - 0.0001 22.0 1.7 0.00015 21.5 1.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|284164106|ref|YP_003402385.1| - 0.00013 21.3 0.7 0.00018 20.9 0.5 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zf-RING_3 PF14369.1 gi|284164106|ref|YP_003402385.1| - 0.0022 17.9 1.5 1.2 9.2 0.2 2.2 2 0 0 2 2 2 2 zinc-finger Prok-RING_1 PF14446.1 gi|284164106|ref|YP_003402385.1| - 0.0043 16.7 0.9 0.0063 16.2 0.6 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 UPF0547 PF10571.4 gi|284164106|ref|YP_003402385.1| - 0.011 15.4 0.8 0.021 14.4 0.5 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 YhfH PF14149.1 gi|284164106|ref|YP_003402385.1| - 0.18 11.5 2.2 0.28 10.9 1.5 1.3 1 0 0 1 1 1 0 YhfH-like protein DHquinase_I PF01487.10 gi|284164107|ref|YP_003402386.1| - 1.4e-41 142.6 0.0 1.7e-41 142.3 0.0 1.1 1 0 0 1 1 1 1 Type I 3-dehydroquinase Homoserine_dh PF00742.14 gi|284164108|ref|YP_003402387.1| - 2.1e-50 170.8 0.1 3.4e-50 170.2 0.0 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase ELFV_dehydrog PF00208.16 gi|284164108|ref|YP_003402387.1| - 8.6e-08 32.0 0.2 2.6e-07 30.4 0.0 1.8 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NAD_binding_3 PF03447.11 gi|284164108|ref|YP_003402387.1| - 9.3e-08 32.4 0.1 2.1e-07 31.3 0.1 1.6 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|284164108|ref|YP_003402387.1| - 0.013 15.5 1.3 0.025 14.5 0.9 1.6 1 1 0 1 1 1 0 NADH(P)-binding 2-Hacid_dh_C PF02826.14 gi|284164108|ref|YP_003402387.1| - 0.015 14.4 0.1 0.022 13.9 0.1 1.2 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|284164108|ref|YP_003402387.1| - 0.02 15.3 0.2 0.086 13.2 0.1 2.1 3 0 0 3 3 2 0 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.11 gi|284164108|ref|YP_003402387.1| - 0.028 13.8 0.0 0.045 13.1 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Ldh_1_N PF00056.18 gi|284164108|ref|YP_003402387.1| - 0.03 14.1 0.2 0.054 13.3 0.1 1.4 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|284164108|ref|YP_003402387.1| - 0.033 13.8 0.0 0.052 13.1 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|284164108|ref|YP_003402387.1| - 0.033 14.1 0.2 0.12 12.3 0.1 2.0 2 0 0 2 2 2 0 TrkA-N domain NAD_Gly3P_dh_N PF01210.18 gi|284164108|ref|YP_003402387.1| - 0.037 13.7 0.0 0.057 13.1 0.0 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus XdhC_C PF13478.1 gi|284164108|ref|YP_003402387.1| - 0.074 13.3 0.1 0.12 12.6 0.0 1.6 1 1 0 1 1 1 0 XdhC Rossmann domain ACT PF01842.20 gi|284164109|ref|YP_003402388.1| - 2.2e-05 23.8 1.8 0.002 17.5 0.0 2.7 2 1 1 3 3 3 2 ACT domain DUF4349 PF14257.1 gi|284164109|ref|YP_003402388.1| - 0.01 15.1 0.0 0.35 10.0 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4349) ACT_4 PF13291.1 gi|284164109|ref|YP_003402388.1| - 0.05 13.9 0.0 0.39 11.1 0.0 2.3 3 0 0 3 3 3 0 ACT domain Arg_repressor PF01316.16 gi|284164109|ref|YP_003402388.1| - 0.083 12.4 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 Arginine repressor, DNA binding domain FerA PF08165.6 gi|284164109|ref|YP_003402388.1| - 0.13 11.9 0.2 2.4 7.8 0.2 2.2 1 1 1 2 2 2 0 FerA (NUC095) domain AAA_23 PF13476.1 gi|284164110|ref|YP_003402389.1| - 5.5e-13 49.6 8.4 5.5e-13 49.6 5.9 4.6 1 1 1 2 2 1 1 AAA domain AAA_13 PF13166.1 gi|284164110|ref|YP_003402389.1| - 1.4e-07 30.4 41.6 0.00025 19.6 13.6 2.1 2 0 0 2 2 2 2 AAA domain CENP-F_leu_zip PF10473.4 gi|284164110|ref|YP_003402389.1| - 2.8e-06 27.2 79.5 6.3e-06 26.1 22.6 5.3 2 2 3 5 5 5 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Seryl_tRNA_N PF02403.17 gi|284164110|ref|YP_003402389.1| - 5.8e-06 26.2 58.3 0.089 12.8 2.0 5.9 3 2 2 5 5 5 3 Seryl-tRNA synthetase N-terminal domain Phage_GP20 PF06810.6 gi|284164110|ref|YP_003402389.1| - 7.5e-05 22.2 55.0 0.05 13.0 7.5 4.9 2 2 2 4 4 4 3 Phage minor structural protein GP20 Reo_sigmaC PF04582.7 gi|284164110|ref|YP_003402389.1| - 0.00012 21.4 19.1 0.0075 15.4 4.6 3.4 2 1 1 3 3 3 2 Reovirus sigma C capsid protein GAS PF13851.1 gi|284164110|ref|YP_003402389.1| - 0.00016 20.9 58.6 0.074 12.2 13.2 4.9 2 2 2 4 4 4 4 Growth-arrest specific micro-tubule binding MAD PF05557.8 gi|284164110|ref|YP_003402389.1| - 0.00056 18.1 24.5 0.00056 18.1 17.0 2.4 2 0 0 2 2 2 1 Mitotic checkpoint protein Baculo_PEP_C PF04513.7 gi|284164110|ref|YP_003402389.1| - 0.0011 18.8 28.3 0.15 11.8 1.3 4.7 2 2 2 4 4 4 2 Baculovirus polyhedron envelope protein, PEP, C terminus MscS_porin PF12795.2 gi|284164110|ref|YP_003402389.1| - 0.0012 18.2 33.3 0.0012 18.2 23.1 4.2 3 2 0 3 3 3 1 Mechanosensitive ion channel porin domain PilJ PF13675.1 gi|284164110|ref|YP_003402389.1| - 0.0038 17.5 38.6 0.12 12.6 2.5 5.5 2 2 4 6 6 6 2 Type IV pili methyl-accepting chemotaxis transducer N-term WEMBL PF05701.6 gi|284164110|ref|YP_003402389.1| - 0.0045 15.5 58.9 0.096 11.1 24.5 3.1 1 1 1 2 2 2 1 Weak chloroplast movement under blue light Spc7 PF08317.6 gi|284164110|ref|YP_003402389.1| - 0.0066 15.1 62.3 0.1 11.2 7.2 4.3 2 2 1 3 3 3 3 Spc7 kinetochore protein Atg14 PF10186.4 gi|284164110|ref|YP_003402389.1| - 0.0089 15.0 58.2 0.11 11.4 11.0 4.5 2 1 2 5 5 5 4 UV radiation resistance protein and autophagy-related subunit 14 FlaC_arch PF05377.6 gi|284164110|ref|YP_003402389.1| - 0.01 15.7 1.2 0.01 15.7 0.9 8.0 6 2 2 8 8 7 0 Flagella accessory protein C (FlaC) Myosin_tail_1 PF01576.14 gi|284164110|ref|YP_003402389.1| - 0.01 13.5 71.1 0.12 10.0 23.9 2.6 2 0 0 2 2 2 0 Myosin tail IFT57 PF10498.4 gi|284164110|ref|YP_003402389.1| - 0.018 13.7 51.9 0.78 8.4 13.4 4.0 2 2 1 3 3 3 0 Intra-flagellar transport protein 57 NPV_P10 PF05531.7 gi|284164110|ref|YP_003402389.1| - 0.031 14.5 39.2 0.31 11.3 1.1 6.4 2 2 3 6 6 6 0 Nucleopolyhedrovirus P10 protein IncA PF04156.9 gi|284164110|ref|YP_003402389.1| - 0.049 13.2 92.9 0.24 10.9 21.5 4.6 2 2 2 4 4 4 0 IncA protein AAA_27 PF13514.1 gi|284164110|ref|YP_003402389.1| - 0.072 10.7 58.5 0.0054 14.4 20.3 2.7 2 1 1 3 3 3 0 AAA domain DUF1664 PF07889.7 gi|284164110|ref|YP_003402389.1| - 0.083 12.6 44.1 0.074 12.8 4.5 6.2 2 2 2 6 6 5 0 Protein of unknown function (DUF1664) HALZ PF02183.13 gi|284164110|ref|YP_003402389.1| - 0.088 12.5 0.3 0.088 12.5 0.2 5.2 5 0 0 5 5 3 0 Homeobox associated leucine zipper Fib_alpha PF08702.5 gi|284164110|ref|YP_003402389.1| - 0.11 12.5 39.3 0.43 10.6 5.3 4.3 3 1 1 4 4 4 0 Fibrinogen alpha/beta chain family SMC_N PF02463.14 gi|284164110|ref|YP_003402389.1| - 0.12 11.6 0.0 0.12 11.6 0.0 2.6 2 1 0 2 2 1 0 RecF/RecN/SMC N terminal domain TPR_MLP1_2 PF07926.7 gi|284164110|ref|YP_003402389.1| - 0.13 12.0 60.3 0.71 9.6 5.2 5.5 3 1 2 5 5 5 0 TPR/MLP1/MLP2-like protein Tropomyosin_1 PF12718.2 gi|284164110|ref|YP_003402389.1| - 0.13 12.1 90.1 0.33 10.8 23.6 4.6 2 2 2 4 4 4 0 Tropomyosin like FliD_N PF02465.13 gi|284164110|ref|YP_003402389.1| - 0.22 11.9 19.6 1 9.7 0.2 5.9 2 2 3 5 5 5 0 Flagellar hook-associated protein 2 N-terminus Filament PF00038.16 gi|284164110|ref|YP_003402389.1| - 0.22 10.9 68.8 4.9 6.5 20.2 4.2 2 2 1 3 3 3 0 Intermediate filament protein ATG16 PF08614.6 gi|284164110|ref|YP_003402389.1| - 0.35 10.6 68.2 0.27 11.0 5.9 5.1 3 1 2 5 5 5 0 Autophagy protein 16 (ATG16) TBPIP PF07106.8 gi|284164110|ref|YP_003402389.1| - 0.48 9.9 60.2 1.3 8.5 4.6 5.5 2 2 3 5 5 5 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DivIC PF04977.10 gi|284164110|ref|YP_003402389.1| - 0.52 9.8 75.8 0.041 13.3 2.3 9.2 3 2 7 10 10 9 0 Septum formation initiator Prominin PF05478.6 gi|284164110|ref|YP_003402389.1| - 0.72 7.3 28.8 0.18 9.3 5.1 3.0 2 1 1 3 3 3 0 Prominin DUF2730 PF10805.3 gi|284164110|ref|YP_003402389.1| - 0.94 9.2 33.3 0.14 11.8 3.2 5.1 2 2 3 5 5 5 0 Protein of unknown function (DUF2730) Cluap1 PF10234.4 gi|284164110|ref|YP_003402389.1| - 1.2 8.3 50.4 0.33 10.1 7.7 4.5 2 2 3 5 5 5 0 Clusterin-associated protein-1 Laminin_II PF06009.7 gi|284164110|ref|YP_003402389.1| - 1.2 8.8 37.4 0.36 10.5 3.5 5.3 2 2 5 7 7 7 0 Laminin Domain II APG6 PF04111.7 gi|284164110|ref|YP_003402389.1| - 1.3 8.0 72.8 0.95 8.4 15.5 4.1 2 2 2 4 4 4 0 Autophagy protein Apg6 DUF4140 PF13600.1 gi|284164110|ref|YP_003402389.1| - 1.3 9.4 68.5 1.5 9.3 1.5 8.4 3 2 5 8 8 7 0 N-terminal domain of unknown function (DUF4140) DUF869 PF05911.6 gi|284164110|ref|YP_003402389.1| - 2.1 6.4 51.4 0.012 13.9 14.4 3.3 2 1 1 3 3 3 0 Plant protein of unknown function (DUF869) Mnd1 PF03962.10 gi|284164110|ref|YP_003402389.1| - 2.4 7.7 62.1 5.3 6.6 5.1 5.3 2 2 3 5 5 5 0 Mnd1 family BLOC1_2 PF10046.4 gi|284164110|ref|YP_003402389.1| - 3.9 7.6 49.9 0.24 11.5 2.0 6.6 2 2 4 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 CENP-Q PF13094.1 gi|284164110|ref|YP_003402389.1| - 4.8 7.1 63.6 0.17 11.8 9.2 4.1 1 1 2 3 3 2 0 CENP-Q, a CENPA-CAD centromere complex subunit TMF_TATA_bd PF12325.3 gi|284164110|ref|YP_003402389.1| - 5.3 6.7 77.6 0.26 11.0 3.1 5.8 2 2 4 6 6 6 0 TATA element modulatory factor 1 TATA binding Spectrin PF00435.16 gi|284164110|ref|YP_003402389.1| - 5.6 7.3 52.8 2 8.7 4.2 5.9 2 2 2 4 4 3 0 Spectrin repeat DUF4407 PF14362.1 gi|284164110|ref|YP_003402389.1| - 5.8 5.7 48.1 0.24 10.2 8.9 3.6 2 1 2 4 4 4 0 Domain of unknown function (DUF4407) COG2 PF06148.6 gi|284164110|ref|YP_003402389.1| - 6.2 6.7 39.0 4.7 7.1 6.7 5.9 2 2 2 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF3584 PF12128.3 gi|284164110|ref|YP_003402389.1| - 7.8 3.6 64.8 2 5.6 20.7 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF3584) HisG_C PF08029.6 gi|284164111|ref|YP_003402390.1| - 0.077 12.9 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 HisG, C-terminal domain IclR PF01614.13 gi|284164112|ref|YP_003402391.1| - 8.5e-32 109.5 0.0 1.5e-31 108.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|284164112|ref|YP_003402391.1| - 2.3e-10 39.8 0.0 4.5e-10 38.9 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|284164112|ref|YP_003402391.1| - 1.3e-06 28.1 0.1 3.7e-06 26.6 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|284164112|ref|YP_003402391.1| - 2e-05 24.1 0.0 3.7e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|284164112|ref|YP_003402391.1| - 2.4e-05 23.9 0.0 7.1e-05 22.4 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|284164112|ref|YP_003402391.1| - 2.7e-05 23.4 0.0 6.1e-05 22.3 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.1 gi|284164112|ref|YP_003402391.1| - 0.00072 19.5 0.1 0.0018 18.2 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|284164112|ref|YP_003402391.1| - 0.0011 18.6 0.0 0.0031 17.1 0.0 1.7 2 0 0 2 2 1 1 MarR family EAP30 PF04157.11 gi|284164112|ref|YP_003402391.1| - 0.0052 15.9 0.0 0.009 15.1 0.0 1.3 1 0 0 1 1 1 1 EAP30/Vps36 family DUF1803 PF08820.5 gi|284164112|ref|YP_003402391.1| - 0.0081 15.8 0.0 0.011 15.4 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1803) HTH_11 PF08279.7 gi|284164112|ref|YP_003402391.1| - 0.013 15.0 0.0 0.038 13.6 0.0 1.8 1 0 0 1 1 1 0 HTH domain DUF742 PF05331.6 gi|284164112|ref|YP_003402391.1| - 0.023 14.2 0.0 0.056 13.0 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF742) FeoC PF09012.5 gi|284164112|ref|YP_003402391.1| - 0.039 13.6 0.0 0.083 12.6 0.0 1.5 1 0 0 1 1 1 0 FeoC like transcriptional regulator TrmB PF01978.14 gi|284164112|ref|YP_003402391.1| - 0.043 13.5 0.0 0.084 12.5 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF3759 PF12585.3 gi|284164112|ref|YP_003402391.1| - 0.076 12.9 0.1 0.19 11.6 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3759) HTH_40 PF14493.1 gi|284164112|ref|YP_003402391.1| - 0.099 12.8 0.0 0.23 11.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Methyltransf_6 PF03737.10 gi|284164113|ref|YP_003402392.1| - 1.8e-35 122.0 0.9 2.3e-35 121.7 0.6 1.1 1 0 0 1 1 1 1 Demethylmenaquinone methyltransferase Lactamase_B_5 PF14597.1 gi|284164115|ref|YP_003402394.1| - 0.0044 16.4 0.0 0.0054 16.1 0.0 1.0 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily TctC PF03401.9 gi|284164116|ref|YP_003402395.1| - 1e-47 162.3 0.0 1.2e-47 162.1 0.0 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor Phosphonate-bd PF12974.2 gi|284164116|ref|YP_003402395.1| - 9.3e-05 21.9 0.2 0.00017 21.1 0.1 1.4 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein TAT_signal PF10518.4 gi|284164116|ref|YP_003402395.1| - 0.00042 20.0 0.6 0.0022 17.8 0.4 2.3 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence NMT1_2 PF13379.1 gi|284164116|ref|YP_003402395.1| - 0.024 14.0 0.1 0.036 13.4 0.1 1.3 1 0 0 1 1 1 0 NMT1-like family SBP_bac_3 PF00497.15 gi|284164116|ref|YP_003402395.1| - 0.032 13.4 0.1 0.053 12.7 0.0 1.4 1 1 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 ADH_N PF08240.7 gi|284164117|ref|YP_003402396.1| - 7.8e-32 109.2 1.3 2e-31 107.9 0.4 2.0 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|284164117|ref|YP_003402396.1| - 3e-18 65.6 0.1 4.7e-18 64.9 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|284164117|ref|YP_003402396.1| - 5.2e-08 33.8 0.8 1.8e-07 32.1 0.1 2.0 1 1 1 2 2 2 1 Zinc-binding dehydrogenase Pyr_redox_2 PF07992.9 gi|284164117|ref|YP_003402396.1| - 0.086 12.7 0.0 9.7 6.0 0.0 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Lactamase_B PF00753.22 gi|284164118|ref|YP_003402397.1| - 5.6e-14 52.2 9.7 7e-14 51.9 6.7 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_5 PF14597.1 gi|284164118|ref|YP_003402397.1| - 3.7e-05 23.2 0.0 4.6e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|284164118|ref|YP_003402397.1| - 0.00087 18.8 0.2 0.0011 18.4 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain TctB PF07331.6 gi|284164119|ref|YP_003402398.1| - 6.8e-20 71.1 9.4 8.7e-20 70.8 6.5 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctB family O-antigen_lig PF13425.1 gi|284164119|ref|YP_003402398.1| - 0.51 10.3 11.0 0.63 10.0 6.0 2.0 2 0 0 2 2 2 0 O-antigen ligase like membrane protein TctA PF01970.11 gi|284164120|ref|YP_003402399.1| - 9.9e-142 472.2 42.5 1.3e-141 471.8 29.5 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family Acetyltransf_1 PF00583.19 gi|284164121|ref|YP_003402400.1| - 2.1e-14 53.3 0.0 3.4e-14 52.6 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.1 gi|284164121|ref|YP_003402400.1| - 2.3e-12 47.2 0.0 3e-12 46.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|284164121|ref|YP_003402400.1| - 2.2e-08 34.2 0.0 2.8e-08 33.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|284164121|ref|YP_003402400.1| - 1.5e-06 28.0 0.0 2.5e-05 24.1 0.0 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|284164121|ref|YP_003402400.1| - 2.8e-06 26.9 0.0 4.8e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|284164121|ref|YP_003402400.1| - 3e-06 27.1 0.0 5.7e-06 26.2 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|284164121|ref|YP_003402400.1| - 4e-06 26.8 0.0 6.7e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|284164121|ref|YP_003402400.1| - 5.9e-06 26.3 0.0 8.3e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Usp PF00582.21 gi|284164122|ref|YP_003402401.1| - 1.3e-13 51.3 0.4 1.6e-13 51.0 0.3 1.1 1 0 0 1 1 1 1 Universal stress protein family DUF4607 PF15380.1 gi|284164122|ref|YP_003402401.1| - 0.087 12.2 0.0 0.14 11.6 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4607) Epimerase PF01370.16 gi|284164123|ref|YP_003402402.1| - 4e-22 78.8 0.0 6e-22 78.2 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|284164123|ref|YP_003402402.1| - 1.3e-13 50.3 0.0 2.1e-13 49.6 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|284164123|ref|YP_003402402.1| - 7.5e-11 41.4 0.0 1.7e-10 40.2 0.0 1.5 1 1 1 2 2 2 1 Male sterility protein NAD_binding_10 PF13460.1 gi|284164123|ref|YP_003402402.1| - 3.2e-10 40.3 0.0 7.8e-10 39.0 0.0 1.6 2 0 0 2 2 2 1 NADH(P)-binding RmlD_sub_bind PF04321.12 gi|284164123|ref|YP_003402402.1| - 2.3e-08 33.2 0.1 8.3e-08 31.4 0.1 1.8 1 1 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|284164123|ref|YP_003402402.1| - 4e-08 32.5 0.0 1.1e-06 27.8 0.0 2.6 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein adh_short PF00106.20 gi|284164123|ref|YP_003402402.1| - 2.2e-05 24.4 0.0 0.005 16.7 0.0 3.2 3 1 0 3 3 3 1 short chain dehydrogenase KR PF08659.5 gi|284164123|ref|YP_003402402.1| - 0.00011 21.8 0.0 0.22 11.1 0.0 2.5 2 1 1 3 3 3 2 KR domain Amidohydro_4 PF13147.1 gi|284164123|ref|YP_003402402.1| - 0.0063 16.5 0.2 0.038 14.0 0.0 2.2 2 1 1 3 3 3 1 Amidohydrolase DUF296 PF03479.10 gi|284164124|ref|YP_003402403.1| - 3.9e-21 74.9 0.1 4.6e-21 74.6 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF296) TFIIB PF00382.14 gi|284164125|ref|YP_003402404.1| - 1.3e-41 140.2 0.6 5.1e-22 77.4 0.0 2.4 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|284164125|ref|YP_003402404.1| - 1.2e-15 56.5 5.2 1.8e-15 55.9 2.9 1.8 2 0 0 2 2 2 1 TFIIB zinc-binding Sigma70_r4 PF04545.11 gi|284164125|ref|YP_003402404.1| - 0.018 14.3 0.1 1.3 8.3 0.0 3.4 3 0 0 3 3 3 0 Sigma-70, region 4 A2L_zn_ribbon PF08792.5 gi|284164125|ref|YP_003402404.1| - 0.056 12.9 1.4 0.099 12.1 1.0 1.4 1 0 0 1 1 1 0 A2L zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|284164125|ref|YP_003402404.1| - 0.45 10.2 2.3 0.69 9.6 0.9 1.8 2 0 0 2 2 2 0 Putative transposase DNA-binding domain NTPase_I-T PF01931.13 gi|284164126|ref|YP_003402405.1| - 4.8e-38 130.5 0.0 5.4e-38 130.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 REGB_T4 PF10715.4 gi|284164126|ref|YP_003402405.1| - 0.029 14.4 0.0 0.036 14.1 0.0 1.1 1 0 0 1 1 1 0 Endoribonuclease RegB T4-bacteriophage encoded LexA_DNA_bind PF01726.11 gi|284164127|ref|YP_003402406.1| - 0.0013 18.2 0.0 0.002 17.6 0.0 1.2 1 0 0 1 1 1 1 LexA DNA binding domain HTH_24 PF13412.1 gi|284164127|ref|YP_003402406.1| - 0.011 15.0 0.2 2.1 7.7 0.0 2.9 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding RepL PF05732.6 gi|284164127|ref|YP_003402406.1| - 0.1 11.7 0.0 0.12 11.5 0.0 1.1 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) RPA_C PF08784.6 gi|284164127|ref|YP_003402406.1| - 0.12 12.8 0.0 0.14 12.5 0.0 1.1 1 0 0 1 1 1 0 Replication protein A C terminal HAD_2 PF13419.1 gi|284164128|ref|YP_003402407.1| - 2.4e-14 53.9 0.2 2.9e-14 53.6 0.1 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|284164128|ref|YP_003402407.1| - 2.9e-13 50.7 0.0 2.9e-10 40.9 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|284164128|ref|YP_003402407.1| - 3.6e-08 33.0 0.0 9.7e-08 31.6 0.0 1.8 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.2 gi|284164128|ref|YP_003402407.1| - 0.0064 16.6 0.3 0.0086 16.2 0.2 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|284164128|ref|YP_003402407.1| - 0.11 12.3 0.1 0.69 9.8 0.0 2.1 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase HTH_20 PF12840.2 gi|284164129|ref|YP_003402408.1| - 1e-09 38.0 0.3 0.00022 20.9 0.0 2.5 2 0 0 2 2 2 2 Helix-turn-helix domain MarR_2 PF12802.2 gi|284164129|ref|YP_003402408.1| - 2.1e-09 36.9 0.8 1.8e-06 27.5 0.0 3.3 2 1 1 3 3 3 1 MarR family MarR PF01047.17 gi|284164129|ref|YP_003402408.1| - 3e-09 36.4 0.0 1.6e-05 24.4 0.0 2.3 2 0 0 2 2 2 2 MarR family HTH_24 PF13412.1 gi|284164129|ref|YP_003402408.1| - 5.6e-09 35.2 0.0 4.5e-06 25.9 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|284164129|ref|YP_003402408.1| - 3.1e-08 33.1 0.0 0.0019 17.8 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_34 PF13601.1 gi|284164129|ref|YP_003402408.1| - 2.5e-06 27.3 0.0 0.0029 17.5 0.0 2.2 2 0 0 2 2 2 2 Winged helix DNA-binding domain TrmB PF01978.14 gi|284164129|ref|YP_003402408.1| - 1.9e-05 24.2 0.0 0.0069 16.0 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.14 gi|284164129|ref|YP_003402408.1| - 7.1e-05 22.6 0.0 0.00015 21.6 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.5 gi|284164129|ref|YP_003402408.1| - 0.00023 20.6 0.8 0.0055 16.2 0.1 3.1 2 1 0 2 2 2 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|284164129|ref|YP_003402408.1| - 0.00041 20.0 0.0 0.0036 17.0 0.0 2.4 3 0 0 3 3 3 1 Crp-like helix-turn-helix domain HTH_11 PF08279.7 gi|284164129|ref|YP_003402408.1| - 0.0042 16.7 0.0 0.0076 15.8 0.0 1.4 1 0 0 1 1 1 1 HTH domain GntR PF00392.16 gi|284164129|ref|YP_003402408.1| - 0.0042 16.4 0.0 0.014 14.8 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_27 PF13463.1 gi|284164129|ref|YP_003402408.1| - 0.0069 16.6 0.1 0.11 12.8 0.0 2.6 2 1 0 2 2 2 1 Winged helix DNA-binding domain HTH_1 PF00126.22 gi|284164129|ref|YP_003402408.1| - 0.017 14.8 0.6 2.4 7.9 0.0 2.9 3 0 0 3 3 3 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_23 PF13384.1 gi|284164129|ref|YP_003402408.1| - 0.021 14.4 0.1 0.12 12.0 0.0 2.3 3 0 0 3 3 3 0 Homeodomain-like domain DUF2250 PF10007.4 gi|284164129|ref|YP_003402408.1| - 0.066 13.1 0.0 1.8 8.5 0.0 2.3 2 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_AsnC-type PF13404.1 gi|284164129|ref|YP_003402408.1| - 0.1 12.1 0.0 0.1 12.1 0.0 2.6 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain Band_7 PF01145.20 gi|284164130|ref|YP_003402409.1| - 7.2e-38 130.2 4.6 7.2e-38 130.2 3.2 2.4 3 0 0 3 3 3 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|284164130|ref|YP_003402409.1| - 0.00011 21.8 0.2 0.00022 20.8 0.2 1.5 1 0 0 1 1 1 1 SPFH domain-Band 7 family NfeD PF01957.13 gi|284164131|ref|YP_003402410.1| - 1.8e-13 50.8 3.8 2.3e-13 50.4 2.6 1.1 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding Oxidored_q2 PF00420.19 gi|284164131|ref|YP_003402410.1| - 0.43 10.1 4.7 0.67 9.5 3.3 1.2 1 0 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L PK PF00224.16 gi|284164133|ref|YP_003402412.1| - 3.5e-118 394.1 4.1 5e-118 393.7 2.8 1.2 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.11 gi|284164133|ref|YP_003402412.1| - 1.6e-32 111.5 1.1 3.1e-32 110.5 0.8 1.5 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain PEP-utilizers PF00391.18 gi|284164133|ref|YP_003402412.1| - 5.3e-12 45.1 0.9 2e-11 43.2 0.1 2.5 3 0 0 3 3 3 1 PEP-utilising enzyme, mobile domain HpcH_HpaI PF03328.9 gi|284164133|ref|YP_003402412.1| - 0.0014 17.5 1.8 0.003 16.4 0.9 1.8 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family ADSL_C PF10397.4 gi|284164134|ref|YP_003402413.1| - 0.11 12.5 0.1 0.34 10.9 0.1 1.7 1 0 0 1 1 1 0 Adenylosuccinate lyase C-terminus SprT-like PF10263.4 gi|284164135|ref|YP_003402414.1| - 1.3e-18 67.1 2.0 1.6e-18 66.8 1.4 1.1 1 0 0 1 1 1 1 SprT-like family Peptidase_MA_2 PF13485.1 gi|284164135|ref|YP_003402414.1| - 0.00053 20.0 0.1 0.00071 19.6 0.0 1.3 1 0 0 1 1 1 1 Peptidase MA superfamily BSP PF04450.7 gi|284164135|ref|YP_003402414.1| - 0.018 14.5 0.0 0.027 13.9 0.0 1.3 1 0 0 1 1 1 0 Peptidase of plants and bacteria DBD_Tnp_Mut PF03108.10 gi|284164135|ref|YP_003402414.1| - 0.04 13.4 0.3 0.093 12.3 0.2 1.6 1 0 0 1 1 1 0 MuDR family transposase Zn-ribbon_8 PF09723.5 gi|284164135|ref|YP_003402414.1| - 0.13 12.1 0.3 2.6 8.0 0.0 2.3 2 0 0 2 2 2 0 Zinc ribbon domain DUF35_N PF12172.3 gi|284164135|ref|YP_003402414.1| - 0.79 9.7 8.9 1.3 9.0 2.9 3.2 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF2887 PF11103.3 gi|284164136|ref|YP_003402415.1| - 0.072 12.6 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2887) TAT_signal PF10518.4 gi|284164136|ref|YP_003402415.1| - 0.42 10.7 2.1 0.84 9.7 1.5 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence NUP PF06516.6 gi|284164138|ref|YP_003402417.1| - 2.2e-52 177.8 0.0 2.8e-52 177.4 0.0 1.0 1 0 0 1 1 1 1 Purine nucleoside permease (NUP) PNP_UDP_1 PF01048.15 gi|284164138|ref|YP_003402417.1| - 3.4e-15 55.6 0.5 5.2e-15 55.0 0.4 1.2 1 0 0 1 1 1 1 Phosphorylase superfamily DUF867 PF05908.6 gi|284164140|ref|YP_003402419.1| - 5.2e-16 58.3 0.0 6.9e-16 57.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF867) Nramp PF01566.13 gi|284164141|ref|YP_003402420.1| - 7.1e-33 113.8 32.0 1.1e-32 113.2 22.2 1.3 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein DUF4212 PF13937.1 gi|284164141|ref|YP_003402420.1| - 0.18 11.8 0.0 0.18 11.8 0.0 3.5 4 0 0 4 4 4 0 Domain of unknown function (DUF4212) COX14 PF14880.1 gi|284164141|ref|YP_003402420.1| - 0.38 10.4 9.5 0.34 10.5 0.3 3.6 3 0 0 3 3 3 0 Cytochrome oxidase c assembly DeoC PF01791.4 gi|284164142|ref|YP_003402421.1| - 2e-43 148.3 0.1 2.4e-43 148.1 0.1 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase AP_endonuc_2 PF01261.19 gi|284164142|ref|YP_003402421.1| - 0.00048 19.4 0.1 0.001 18.4 0.1 1.6 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel OMPdecase PF00215.19 gi|284164142|ref|YP_003402421.1| - 0.014 14.8 0.2 0.073 12.4 0.1 2.2 1 1 0 1 1 1 0 Orotidine 5'-phosphate decarboxylase / HUMPS family DUF561 PF04481.7 gi|284164142|ref|YP_003402421.1| - 0.14 11.1 0.0 0.22 10.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF561) Trp_syntA PF00290.15 gi|284164143|ref|YP_003402422.1| - 4.8e-87 290.7 0.0 5.7e-87 290.5 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.16 gi|284164143|ref|YP_003402422.1| - 0.0026 17.0 0.0 0.006 15.8 0.0 1.5 2 0 0 2 2 2 1 Histidine biosynthesis protein PcrB PF01884.12 gi|284164143|ref|YP_003402422.1| - 0.0082 15.4 0.1 0.023 13.9 0.1 1.8 2 0 0 2 2 2 1 PcrB family PucR PF07905.6 gi|284164143|ref|YP_003402422.1| - 0.011 15.2 0.0 0.042 13.4 0.0 1.9 2 0 0 2 2 2 0 Purine catabolism regulatory protein-like family PA PF02225.17 gi|284164143|ref|YP_003402422.1| - 0.012 15.3 0.1 0.065 12.9 0.0 2.0 2 0 0 2 2 2 0 PA domain ThiG PF05690.9 gi|284164143|ref|YP_003402422.1| - 0.078 12.0 0.6 0.13 11.3 0.4 1.3 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG PALP PF00291.20 gi|284164144|ref|YP_003402423.1| - 9.6e-36 123.5 0.3 2e-35 122.5 0.2 1.4 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme IGPS PF00218.16 gi|284164145|ref|YP_003402424.1| - 8.3e-73 244.5 0.0 9.4e-73 244.3 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase FMN_dh PF01070.13 gi|284164145|ref|YP_003402424.1| - 4.5e-06 25.7 1.3 1.3e-05 24.1 0.4 1.6 1 1 1 2 2 2 1 FMN-dependent dehydrogenase His_biosynth PF00977.16 gi|284164145|ref|YP_003402424.1| - 9.2e-06 25.0 0.0 0.0004 19.7 0.0 2.4 2 1 0 2 2 2 1 Histidine biosynthesis protein QRPTase_C PF01729.14 gi|284164145|ref|YP_003402424.1| - 2.2e-05 24.0 0.3 0.00012 21.6 0.0 2.1 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain NanE PF04131.9 gi|284164145|ref|YP_003402424.1| - 0.0002 20.4 0.1 0.002 17.1 0.1 2.3 1 1 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase PcrB PF01884.12 gi|284164145|ref|YP_003402424.1| - 0.0081 15.4 0.0 0.039 13.1 0.0 1.9 2 0 0 2 2 2 1 PcrB family Trp_syntA PF00290.15 gi|284164145|ref|YP_003402424.1| - 0.015 13.8 0.0 0.028 12.9 0.0 1.5 1 0 0 1 1 1 0 Tryptophan synthase alpha chain Amidohydro_3 PF07969.6 gi|284164145|ref|YP_003402424.1| - 0.016 14.4 0.4 0.022 13.9 0.2 1.4 1 1 0 1 1 1 0 Amidohydrolase family ThiG PF05690.9 gi|284164145|ref|YP_003402424.1| - 0.026 13.6 0.7 0.21 10.6 0.4 2.2 2 1 0 2 2 2 0 Thiazole biosynthesis protein ThiG ComA PF02679.10 gi|284164145|ref|YP_003402424.1| - 0.031 13.2 0.0 5 6.0 0.0 2.5 2 1 1 3 3 3 0 (2R)-phospho-3-sulfolactate synthase (ComA) DHO_dh PF01180.16 gi|284164145|ref|YP_003402424.1| - 0.031 13.2 0.0 0.051 12.5 0.0 1.3 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase AP_endonuc_2 PF01261.19 gi|284164145|ref|YP_003402424.1| - 0.064 12.5 0.2 8 5.6 0.0 2.3 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel DeoC PF01791.4 gi|284164145|ref|YP_003402424.1| - 0.088 12.0 1.3 2.8 7.1 0.0 2.9 2 1 0 3 3 3 0 DeoC/LacD family aldolase DNA_binding_1 PF01035.15 gi|284164146|ref|YP_003402425.1| - 1.2e-08 34.5 0.0 2e-08 33.8 0.0 1.3 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain AAA_25 PF13481.1 gi|284164146|ref|YP_003402425.1| - 0.013 14.9 0.1 0.014 14.7 0.1 1.1 1 0 0 1 1 1 0 AAA domain DUF2910 PF11139.3 gi|284164147|ref|YP_003402426.1| - 0.014 14.5 7.0 0.019 14.1 4.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2910) 7TMR-DISM_7TM PF07695.6 gi|284164147|ref|YP_003402426.1| - 0.026 14.2 9.0 0.035 13.7 6.3 1.2 1 0 0 1 1 1 0 7TM diverse intracellular signalling OST3_OST6 PF04756.8 gi|284164147|ref|YP_003402426.1| - 0.14 11.6 3.0 0.36 10.3 2.1 1.7 1 1 0 1 1 1 0 OST3 / OST6 family Oxidored_q6 PF01058.17 gi|284164147|ref|YP_003402426.1| - 0.15 11.6 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 NADH ubiquinone oxidoreductase, 20 Kd subunit DUF3353 PF11833.3 gi|284164147|ref|YP_003402426.1| - 0.23 10.9 5.2 0.31 10.4 3.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3353) PAP2_3 PF14378.1 gi|284164147|ref|YP_003402426.1| - 0.57 9.6 6.4 0.68 9.4 0.5 2.1 1 1 1 2 2 2 0 PAP2 superfamily Multi_Drug_Res PF00893.14 gi|284164147|ref|YP_003402426.1| - 2 8.9 8.9 0.51 10.8 3.1 2.0 1 1 1 2 2 2 0 Small Multidrug Resistance protein DUF981 PF06168.6 gi|284164147|ref|YP_003402426.1| - 2.7 7.7 8.9 0.89 9.3 3.8 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF981) DUF308 PF03729.8 gi|284164147|ref|YP_003402426.1| - 5.1 7.1 14.6 0.44 10.5 6.0 2.1 1 1 1 2 2 2 0 Short repeat of unknown function (DUF308) Claudin_2 PF13903.1 gi|284164147|ref|YP_003402426.1| - 5.3 6.6 8.8 3.6 7.2 4.8 1.7 1 1 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction Abi PF02517.11 gi|284164148|ref|YP_003402427.1| - 1.5e-12 47.4 11.5 1.5e-12 47.4 8.0 2.7 2 1 0 2 2 2 1 CAAX protease self-immunity DUF1510 PF07423.6 gi|284164148|ref|YP_003402427.1| - 0.034 13.5 0.7 0.063 12.6 0.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) Lon_C PF05362.8 gi|284164149|ref|YP_003402428.1| - 8.3e-35 119.9 4.4 1.3e-34 119.2 3.0 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.1 gi|284164149|ref|YP_003402428.1| - 2.3e-29 102.4 0.0 5.1e-22 78.2 0.0 2.2 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|284164149|ref|YP_003402428.1| - 3.2e-17 62.3 0.1 4.6e-10 39.0 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|284164149|ref|YP_003402428.1| - 4.5e-15 55.5 0.0 5.6e-09 35.6 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain ChlI PF13541.1 gi|284164149|ref|YP_003402428.1| - 9.5e-11 41.2 0.7 2.1e-10 40.1 0.5 1.6 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA_5 PF07728.9 gi|284164149|ref|YP_003402428.1| - 2.5e-10 40.2 0.0 0.00093 18.9 0.0 3.2 3 0 0 3 3 3 2 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|284164149|ref|YP_003402428.1| - 1.6e-08 33.7 0.5 0.062 12.0 0.0 3.2 3 0 0 3 3 3 3 MCM2/3/5 family AAA PF00004.24 gi|284164149|ref|YP_003402428.1| - 1.5e-06 28.4 0.0 0.029 14.5 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|284164149|ref|YP_003402428.1| - 1.7e-06 27.2 0.1 0.00059 18.9 0.0 2.4 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus Sigma54_activ_2 PF14532.1 gi|284164149|ref|YP_003402428.1| - 1.7e-05 24.8 0.0 0.12 12.3 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain TIP49 PF06068.8 gi|284164149|ref|YP_003402428.1| - 6.2e-05 21.8 0.1 0.013 14.2 0.0 2.3 2 0 0 2 2 2 1 TIP49 C-terminus AAA_3 PF07726.6 gi|284164149|ref|YP_003402428.1| - 0.00012 21.6 0.1 0.19 11.3 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|284164149|ref|YP_003402428.1| - 0.00018 21.6 0.0 0.0082 16.2 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|284164149|ref|YP_003402428.1| - 0.0024 17.5 0.0 0.031 13.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|284164149|ref|YP_003402428.1| - 0.0029 17.3 0.0 0.0077 15.9 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain PhoH PF02562.11 gi|284164149|ref|YP_003402428.1| - 0.0036 16.5 0.0 0.0094 15.1 0.0 1.7 1 0 0 1 1 1 1 PhoH-like protein AAA_33 PF13671.1 gi|284164149|ref|YP_003402428.1| - 0.0071 16.2 0.0 0.033 14.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|284164149|ref|YP_003402428.1| - 0.008 16.4 0.0 0.035 14.4 0.0 2.2 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.8 gi|284164149|ref|YP_003402428.1| - 0.012 14.5 0.0 0.023 13.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_PrkA PF08298.6 gi|284164149|ref|YP_003402428.1| - 0.012 14.2 0.0 0.31 9.6 0.0 2.2 2 0 0 2 2 2 0 PrkA AAA domain Zeta_toxin PF06414.7 gi|284164149|ref|YP_003402428.1| - 0.016 14.3 0.0 0.031 13.3 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin NACHT PF05729.7 gi|284164149|ref|YP_003402428.1| - 0.019 14.6 0.0 0.038 13.6 0.0 1.5 1 0 0 1 1 1 0 NACHT domain ABC_tran PF00005.22 gi|284164149|ref|YP_003402428.1| - 0.029 14.6 0.0 0.091 13.0 0.0 1.8 2 0 0 2 2 1 0 ABC transporter IstB_IS21 PF01695.12 gi|284164149|ref|YP_003402428.1| - 0.035 13.5 0.0 0.07 12.5 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein T2SE PF00437.15 gi|284164149|ref|YP_003402428.1| - 0.037 12.9 1.9 0.046 12.6 0.0 2.1 4 0 0 4 4 3 0 Type II/IV secretion system protein TrwB_AAD_bind PF10412.4 gi|284164149|ref|YP_003402428.1| - 0.041 12.4 0.0 0.067 11.8 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain KTI12 PF08433.5 gi|284164149|ref|YP_003402428.1| - 0.16 11.1 0.0 0.41 9.8 0.0 1.6 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Parvo_NS1 PF01057.12 gi|284164149|ref|YP_003402428.1| - 0.23 10.3 0.0 0.39 9.5 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_17 PF13207.1 gi|284164149|ref|YP_003402428.1| - 0.25 12.1 2.1 0.55 11.0 0.0 2.6 3 0 0 3 3 2 0 AAA domain CTP_transf_2 PF01467.21 gi|284164150|ref|YP_003402429.1| - 2.9e-17 63.1 0.0 3.6e-17 62.8 0.0 1.3 1 0 0 1 1 1 1 Cytidylyltransferase Citrate_ly_lig PF08218.6 gi|284164150|ref|YP_003402429.1| - 0.0027 17.1 0.0 0.0058 16.1 0.0 1.6 1 1 1 2 2 2 1 Citrate lyase ligase C-terminal domain SAM_adeno_trans PF01887.11 gi|284164151|ref|YP_003402430.1| - 9.2e-72 241.1 0.0 1.3e-71 240.7 0.0 1.2 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase Tim44 PF04280.10 gi|284164152|ref|YP_003402431.1| - 0.1 12.6 0.1 0.5 10.3 0.1 2.0 1 1 0 1 1 1 0 Tim44-like domain Cpn60_TCP1 PF00118.19 gi|284164153|ref|YP_003402432.1| - 5.3e-136 454.0 3.9 6e-136 453.8 2.7 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Amidohydro_2 PF04909.9 gi|284164154|ref|YP_003402433.1| - 8.8e-18 64.8 1.4 1.5e-17 64.1 1.0 1.3 1 1 0 1 1 1 1 Amidohydrolase OrfB_Zn_ribbon PF07282.6 gi|284164155|ref|YP_003402434.1| - 0.0096 15.5 0.5 0.011 15.3 0.4 1.0 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Prok-RING_1 PF14446.1 gi|284164155|ref|YP_003402434.1| - 0.041 13.6 0.4 0.045 13.4 0.3 1.1 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Auto_anti-p27 PF06677.7 gi|284164155|ref|YP_003402434.1| - 0.092 12.5 0.1 0.12 12.1 0.1 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.2 gi|284164155|ref|YP_003402434.1| - 0.11 12.3 1.2 0.13 12.1 0.8 1.2 1 0 0 1 1 1 0 Double zinc ribbon Rep_fac-A_C PF08646.5 gi|284164155|ref|YP_003402434.1| - 0.14 11.8 0.7 0.12 12.0 0.5 1.0 1 0 0 1 1 1 0 Replication factor-A C terminal domain DUF1628 PF07790.6 gi|284164156|ref|YP_003402435.1| - 1.3 9.8 7.7 1.5 9.6 5.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1628) PAC2 PF09754.4 gi|284164157|ref|YP_003402436.1| - 7.1e-50 169.8 0.4 8.5e-50 169.6 0.3 1.0 1 0 0 1 1 1 1 PAC2 family DUF3140 PF11338.3 gi|284164157|ref|YP_003402436.1| - 0.066 13.3 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3140) Nop10p PF04135.7 gi|284164158|ref|YP_003402437.1| - 3e-24 84.5 1.0 3.2e-24 84.3 0.7 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family EIF_2_alpha PF07541.7 gi|284164159|ref|YP_003402438.1| - 5.9e-28 96.8 0.0 9.4e-28 96.2 0.0 1.3 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|284164159|ref|YP_003402438.1| - 2.6e-13 49.8 0.8 6.3e-13 48.6 0.5 1.6 1 0 0 1 1 1 1 S1 RNA binding domain DUF2073 PF09846.4 gi|284164159|ref|YP_003402438.1| - 0.024 14.2 0.0 0.046 13.3 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2073) cwf21 PF08312.7 gi|284164159|ref|YP_003402438.1| - 0.12 12.2 3.0 0.13 12.1 0.2 2.4 2 0 0 2 2 2 0 cwf21 domain Ribosomal_S27e PF01667.12 gi|284164160|ref|YP_003402439.1| - 6e-21 73.7 0.6 6.4e-21 73.6 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 Zn-ribbon_8 PF09723.5 gi|284164160|ref|YP_003402439.1| - 0.00022 21.1 0.9 0.00029 20.6 0.6 1.2 1 0 0 1 1 1 1 Zinc ribbon domain zf-CHY PF05495.7 gi|284164160|ref|YP_003402439.1| - 0.026 14.6 0.5 0.039 14.1 0.3 1.3 1 0 0 1 1 1 0 CHY zinc finger HypA PF01155.14 gi|284164160|ref|YP_003402439.1| - 0.041 13.5 0.7 0.05 13.2 0.5 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF3797 PF12677.2 gi|284164160|ref|YP_003402439.1| - 0.1 12.2 2.2 0.97 9.1 0.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) TF_Zn_Ribbon PF08271.7 gi|284164160|ref|YP_003402439.1| - 0.14 11.5 1.7 0.23 10.8 1.2 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding Mu-like_Com PF10122.4 gi|284164160|ref|YP_003402439.1| - 0.14 11.2 0.7 0.28 10.2 0.5 1.5 1 1 0 1 1 1 0 Mu-like prophage protein Com zinc_ribbon_5 PF13719.1 gi|284164160|ref|YP_003402439.1| - 0.25 10.9 3.0 7.3 6.2 0.1 2.3 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|284164160|ref|YP_003402439.1| - 0.29 10.8 2.7 8.9 6.1 0.1 2.3 1 1 1 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|284164160|ref|YP_003402439.1| - 0.76 10.1 3.3 13 6.1 2.3 2.1 1 1 0 1 1 1 0 Restriction alleviation protein Lar Ribosomal_L44 PF00935.14 gi|284164161|ref|YP_003402440.1| - 1.6e-26 92.1 2.7 2e-26 91.8 1.9 1.1 1 0 0 1 1 1 1 Ribosomal protein L44 Terminase_GpA PF05876.7 gi|284164161|ref|YP_003402440.1| - 0.0023 16.3 0.4 0.0028 16.0 0.3 1.1 1 0 0 1 1 1 1 Phage terminase large subunit (GpA) zf-ribbon_3 PF13248.1 gi|284164161|ref|YP_003402440.1| - 0.0026 16.8 0.6 1.6 8.0 0.0 2.3 2 0 0 2 2 2 2 zinc-ribbon domain DUF2296 PF10058.4 gi|284164161|ref|YP_003402440.1| - 0.007 16.0 2.0 1.1 9.0 0.0 2.2 2 0 0 2 2 2 2 Predicted integral membrane metal-binding protein (DUF2296) zinc_ribbon_2 PF13240.1 gi|284164161|ref|YP_003402440.1| - 0.0083 15.5 5.3 1.2 8.6 1.6 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zf-Mss51 PF13824.1 gi|284164161|ref|YP_003402440.1| - 0.015 15.1 0.4 0.023 14.5 0.3 1.4 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 DZR PF12773.2 gi|284164161|ref|YP_003402440.1| - 0.016 15.0 2.9 0.067 13.0 2.0 1.8 1 1 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.2 gi|284164161|ref|YP_003402440.1| - 0.025 14.3 2.9 2.1 8.1 0.2 2.3 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Lar_restr_allev PF14354.1 gi|284164161|ref|YP_003402440.1| - 0.04 14.2 0.3 0.095 13.0 0.2 1.6 1 1 0 1 1 1 0 Restriction alleviation protein Lar Tnp_zf-ribbon_2 PF13842.1 gi|284164161|ref|YP_003402440.1| - 0.049 14.0 2.9 0.74 10.2 0.2 2.3 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon Zn-ribbon_8 PF09723.5 gi|284164161|ref|YP_003402440.1| - 0.06 13.3 2.7 2.3 8.2 0.2 2.3 2 0 0 2 2 2 0 Zinc ribbon domain zf-ISL3 PF14690.1 gi|284164161|ref|YP_003402440.1| - 0.068 13.2 5.1 2.6 8.1 0.0 2.5 2 1 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-UBR PF02207.15 gi|284164161|ref|YP_003402440.1| - 0.082 12.6 2.6 4.1 7.1 0.4 2.1 2 0 0 2 2 2 0 Putative zinc finger in N-recognin (UBR box) Cys_rich_CPXG PF14255.1 gi|284164161|ref|YP_003402440.1| - 0.21 11.4 0.3 0.21 11.4 0.2 1.6 2 0 0 2 2 2 0 Cysteine-rich CPXCG RNHCP PF12647.2 gi|284164161|ref|YP_003402440.1| - 0.24 11.2 3.3 5 7.0 2.3 2.0 1 1 0 1 1 1 0 RNHCP domain CpXC PF14353.1 gi|284164161|ref|YP_003402440.1| - 0.32 10.9 1.5 5.4 7.0 0.2 2.1 2 0 0 2 2 2 0 CpXC protein zinc_ribbon_5 PF13719.1 gi|284164161|ref|YP_003402440.1| - 0.61 9.7 2.6 13 5.4 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain WCCH PF03716.9 gi|284164161|ref|YP_003402440.1| - 0.69 9.4 4.7 1.2 8.6 3.3 1.4 1 0 0 1 1 1 0 WCCH motif Ribosomal_L32p PF01783.18 gi|284164161|ref|YP_003402440.1| - 0.8 9.9 4.0 4.1 7.6 0.0 2.4 2 2 0 2 2 2 0 Ribosomal L32p protein family zf-HIT PF04438.11 gi|284164161|ref|YP_003402440.1| - 1.8 8.2 6.0 2 8.1 0.5 2.2 2 0 0 2 2 2 0 HIT zinc finger UPF0547 PF10571.4 gi|284164161|ref|YP_003402440.1| - 2 8.2 4.9 16 5.3 0.4 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Ribosomal_L33 PF00471.15 gi|284164161|ref|YP_003402440.1| - 5.3 7.3 7.6 0.99 9.7 1.8 2.1 2 0 0 2 2 2 0 Ribosomal protein L33 zf-H2C2_2 PF13465.1 gi|284164161|ref|YP_003402440.1| - 7.7 7.0 9.2 2.4 8.5 0.2 2.7 2 1 0 2 2 2 0 Zinc-finger double domain COX1 PF00115.15 gi|284164162|ref|YP_003402441.1| - 1.8e-47 161.9 35.6 1.8e-47 161.9 24.7 1.8 2 0 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I Aconitase PF00330.15 gi|284164162|ref|YP_003402441.1| - 0.21 10.0 0.7 0.43 8.9 0.2 1.6 2 0 0 2 2 2 0 Aconitase family (aconitate hydratase) GtrA PF04138.9 gi|284164164|ref|YP_003402443.1| - 1.1e-22 80.1 10.7 1.4e-22 79.8 7.4 1.1 1 0 0 1 1 1 1 GtrA-like protein DUF21 PF01595.15 gi|284164164|ref|YP_003402443.1| - 0.26 10.5 2.7 0.26 10.5 1.4 1.3 1 1 0 1 1 1 0 Domain of unknown function DUF21 SBP_bac_5 PF00496.17 gi|284164165|ref|YP_003402444.1| - 5.3e-53 180.1 0.0 1.5e-46 158.9 0.0 2.1 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle RPA PF10134.4 gi|284164165|ref|YP_003402444.1| - 0.19 10.9 0.0 0.34 10.1 0.0 1.3 1 0 0 1 1 1 0 Replication initiator protein A PAP2 PF01569.16 gi|284164166|ref|YP_003402445.1| - 6.8e-15 54.8 4.5 6.8e-15 54.8 3.1 2.4 1 1 1 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.1 gi|284164166|ref|YP_003402445.1| - 3e-10 39.9 8.1 6.8e-10 38.7 5.6 1.5 1 0 0 1 1 1 1 PAP2 superfamily Tic20 PF09685.5 gi|284164166|ref|YP_003402445.1| - 3.1 7.7 13.0 0.68 9.9 1.0 3.2 2 1 0 3 3 3 0 Tic20-like protein Bax1-I PF01027.15 gi|284164166|ref|YP_003402445.1| - 9.1 5.8 16.4 2.9 7.4 0.5 2.8 2 1 1 3 3 3 0 Inhibitor of apoptosis-promoting Bax1 ABC_tran PF00005.22 gi|284164168|ref|YP_003402447.1| - 2.8e-33 115.0 0.0 4e-33 114.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|284164168|ref|YP_003402447.1| - 1.7e-15 57.0 0.2 3.7e-15 56.0 0.1 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_16 PF13191.1 gi|284164168|ref|YP_003402447.1| - 0.00023 21.2 0.5 0.00023 21.2 0.4 2.1 2 1 0 2 2 2 1 AAA ATPase domain AAA_21 PF13304.1 gi|284164168|ref|YP_003402447.1| - 0.00026 21.0 0.0 0.21 11.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|284164168|ref|YP_003402447.1| - 0.0012 18.9 0.2 0.018 15.1 0.1 2.3 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|284164168|ref|YP_003402447.1| - 0.0039 16.3 0.0 0.006 15.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_5 PF07728.9 gi|284164168|ref|YP_003402447.1| - 0.005 16.5 0.1 0.015 14.9 0.0 1.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) SMC_N PF02463.14 gi|284164168|ref|YP_003402447.1| - 0.006 15.8 0.0 0.014 14.6 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.18 gi|284164168|ref|YP_003402447.1| - 0.011 15.6 0.0 0.019 14.9 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_29 PF13555.1 gi|284164168|ref|YP_003402447.1| - 0.049 13.1 0.0 0.093 12.2 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATP-synt_ab PF00006.20 gi|284164168|ref|YP_003402447.1| - 0.082 12.3 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA PF00004.24 gi|284164168|ref|YP_003402447.1| - 0.13 12.4 0.0 0.29 11.3 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF3265 PF11665.3 gi|284164168|ref|YP_003402447.1| - 0.15 11.9 0.2 0.31 10.9 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3265) AAA_13 PF13166.1 gi|284164168|ref|YP_003402447.1| - 0.39 9.1 0.4 1.9 6.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|284164169|ref|YP_003402448.1| - 6.7e-26 91.2 0.0 8.9e-26 90.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|284164169|ref|YP_003402448.1| - 2.9e-20 72.3 0.5 6.3e-20 71.2 0.4 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|284164169|ref|YP_003402448.1| - 0.00039 20.4 0.0 0.006 16.5 0.0 2.0 1 1 1 2 2 2 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|284164169|ref|YP_003402448.1| - 0.012 15.1 0.1 0.66 9.4 0.0 2.3 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_22 PF13401.1 gi|284164169|ref|YP_003402448.1| - 0.038 14.1 0.1 0.28 11.3 0.1 2.1 1 1 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.20 gi|284164169|ref|YP_003402448.1| - 0.063 12.7 0.0 0.091 12.2 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain BPD_transp_1 PF00528.17 gi|284164170|ref|YP_003402449.1| - 4.2e-38 130.7 5.7 4.2e-38 130.7 4.0 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|284164170|ref|YP_003402449.1| - 3.4e-09 35.9 2.1 3.4e-09 35.9 1.5 2.7 3 1 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|284164171|ref|YP_003402450.1| - 2.1e-44 151.2 9.1 3.2e-44 150.6 6.3 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component DUF4149 PF13664.1 gi|284164171|ref|YP_003402450.1| - 2.7 8.1 7.2 5.1 7.2 0.5 3.3 3 1 0 3 3 3 0 Domain of unknown function (DUF4149) SBP_bac_5 PF00496.17 gi|284164172|ref|YP_003402451.1| - 2.5e-59 201.0 0.0 2.2e-54 184.7 0.0 2.1 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle Pribosyltran PF00156.22 gi|284164173|ref|YP_003402452.1| - 8.4e-18 64.3 1.7 8.4e-18 64.3 1.2 1.4 2 0 0 2 2 2 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|284164173|ref|YP_003402452.1| - 2.2e-05 23.7 0.3 2.6e-05 23.5 0.2 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|284164173|ref|YP_003402452.1| - 0.068 12.4 0.2 0.093 12.0 0.2 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase CRISPR_Cse2 PF09485.5 gi|284164174|ref|YP_003402453.1| - 0.021 14.8 1.0 0.028 14.4 0.1 1.6 2 0 0 2 2 2 0 CRISPR-associated protein Cse2 (CRISPR_cse2) DFP PF04127.10 gi|284164175|ref|YP_003402454.1| - 6.8e-52 175.7 0.2 1.7e-50 171.2 0.0 2.3 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.14 gi|284164175|ref|YP_003402454.1| - 4.4e-28 97.5 0.1 8.3e-28 96.6 0.1 1.5 1 0 0 1 1 1 1 Flavoprotein MoCF_biosynth PF00994.19 gi|284164176|ref|YP_003402455.1| - 1.2e-32 112.2 0.0 2.9e-32 111.0 0.0 1.6 2 1 0 2 2 2 1 Probable molybdopterin binding domain Cpl-7 PF08230.6 gi|284164176|ref|YP_003402455.1| - 0.0014 18.2 0.1 0.15 11.7 0.0 2.5 2 0 0 2 2 2 2 Cpl-7 lysozyme C-terminal domain adh_short PF00106.20 gi|284164176|ref|YP_003402455.1| - 0.056 13.3 0.9 0.57 10.0 0.1 2.2 1 1 1 2 2 2 0 short chain dehydrogenase IucA_IucC PF04183.7 gi|284164177|ref|YP_003402456.1| - 1.3e-50 171.9 0.0 2.2e-50 171.2 0.0 1.4 1 0 0 1 1 1 1 IucA / IucC family FhuF PF06276.7 gi|284164177|ref|YP_003402456.1| - 4.1e-28 98.3 1.2 7.5e-28 97.5 0.8 1.5 1 0 0 1 1 1 1 Ferric iron reductase FhuF-like transporter DAO PF01266.19 gi|284164178|ref|YP_003402457.1| - 1.2e-11 44.1 5.4 6.6e-06 25.2 0.2 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|284164178|ref|YP_003402457.1| - 2.6e-08 34.0 4.0 0.0001 22.2 0.4 2.3 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|284164178|ref|YP_003402457.1| - 6.9e-07 28.4 4.4 2.8e-05 23.1 1.3 2.2 2 0 0 2 2 2 2 FAD binding domain NAD_binding_8 PF13450.1 gi|284164178|ref|YP_003402457.1| - 0.00013 21.9 0.2 0.00027 20.9 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.2 gi|284164178|ref|YP_003402457.1| - 0.00049 19.3 2.4 0.00049 19.3 1.7 1.8 3 0 0 3 3 3 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|284164178|ref|YP_003402457.1| - 0.0011 17.9 0.2 0.0017 17.3 0.2 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|284164178|ref|YP_003402457.1| - 0.0015 17.0 0.0 0.0054 15.2 0.3 1.6 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_3 PF01494.14 gi|284164178|ref|YP_003402457.1| - 0.0027 16.8 0.9 0.0049 15.9 0.6 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|284164178|ref|YP_003402457.1| - 0.03 14.3 3.9 0.56 10.2 1.3 2.1 1 1 1 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|284164178|ref|YP_003402457.1| - 0.064 13.6 0.4 0.14 12.5 0.2 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|284164178|ref|YP_003402457.1| - 0.072 12.1 0.7 0.18 10.8 0.2 1.7 2 0 0 2 2 2 0 Thi4 family Lycopene_cycl PF05834.7 gi|284164178|ref|YP_003402457.1| - 0.083 11.7 0.7 0.15 10.9 0.5 1.4 1 0 0 1 1 1 0 Lycopene cyclase protein Peptidase_M48 PF01435.13 gi|284164179|ref|YP_003402458.1| - 1.7e-21 76.8 0.0 2.5e-21 76.2 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_MA_2 PF13485.1 gi|284164179|ref|YP_003402458.1| - 0.032 14.2 0.3 0.13 12.3 0.2 1.9 1 1 0 1 1 1 0 Peptidase MA superfamily Peptidase_M43 PF05572.8 gi|284164179|ref|YP_003402458.1| - 0.21 11.1 0.0 0.35 10.4 0.0 1.3 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A DUF2268 PF10026.4 gi|284164179|ref|YP_003402458.1| - 0.22 10.8 0.0 0.33 10.2 0.0 1.2 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) Polyketide_cyc2 PF10604.4 gi|284164180|ref|YP_003402459.1| - 2.1e-10 40.9 0.7 2.6e-10 40.5 0.4 1.3 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|284164180|ref|YP_003402459.1| - 1.1e-06 28.6 0.2 1.9e-06 27.8 0.1 1.4 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport MFS_1 PF07690.11 gi|284164181|ref|YP_003402460.1| - 4e-33 114.6 51.4 9.1e-32 110.1 31.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily PTR2 PF00854.16 gi|284164181|ref|YP_003402460.1| - 0.0016 17.3 5.5 0.08 11.7 0.1 2.6 3 0 0 3 3 3 2 POT family Na_sulph_symp PF00939.14 gi|284164182|ref|YP_003402461.1| - 3.5e-81 273.4 32.7 4.6e-81 273.0 22.7 1.0 1 0 0 1 1 1 1 Sodium:sulfate symporter transmembrane region CitMHS PF03600.11 gi|284164182|ref|YP_003402461.1| - 6.3e-16 57.8 40.7 3.5e-08 32.4 6.6 3.4 2 2 1 3 3 3 3 Citrate transporter HTH_19 PF12844.2 gi|284164183|ref|YP_003402462.1| - 0.013 15.5 0.1 0.019 15.0 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_31 PF13560.1 gi|284164183|ref|YP_003402462.1| - 0.042 14.0 1.9 0.064 13.4 1.3 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain Peptidase_M42 PF05343.9 gi|284164184|ref|YP_003402463.1| - 3.8e-89 298.3 0.2 4.5e-89 298.0 0.1 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|284164184|ref|YP_003402463.1| - 7.2e-13 48.4 0.1 1e-12 47.9 0.1 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.12 gi|284164184|ref|YP_003402463.1| - 1.2e-05 25.1 0.3 3.4e-05 23.6 0.0 1.8 2 0 0 2 2 2 1 Peptidase family M28 Peptidase_M18 PF02127.10 gi|284164184|ref|YP_003402463.1| - 0.00027 19.5 0.0 0.24 9.8 0.0 2.2 2 0 0 2 2 2 2 Aminopeptidase I zinc metalloprotease (M18) OB_RNB PF08206.6 gi|284164184|ref|YP_003402463.1| - 0.019 14.4 0.2 0.19 11.2 0.0 2.4 2 0 0 2 2 2 0 Ribonuclease B OB domain Thiolase_N PF00108.18 gi|284164185|ref|YP_003402464.1| - 1e-10 41.1 0.0 1.4e-08 34.0 0.0 2.2 2 0 0 2 2 2 2 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|284164185|ref|YP_003402464.1| - 3.5e-09 36.1 0.1 8.2e-09 34.9 0.1 1.7 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|284164185|ref|YP_003402464.1| - 4.3e-09 36.2 1.2 4.3e-09 36.2 0.8 2.9 3 1 1 4 4 4 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.5 gi|284164185|ref|YP_003402464.1| - 0.027 14.1 0.3 2.2 7.9 0.0 2.6 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Ketoacyl-synt_C PF02801.17 gi|284164185|ref|YP_003402464.1| - 0.035 13.9 0.7 0.32 10.8 0.0 2.6 2 0 0 2 2 2 0 Beta-ketoacyl synthase, C-terminal domain DUF35 PF01796.12 gi|284164186|ref|YP_003402465.1| - 5.6e-12 45.7 0.7 8e-12 45.2 0.5 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|284164186|ref|YP_003402465.1| - 0.0002 21.1 2.0 0.00086 19.1 1.5 1.9 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) ADK_lid PF05191.9 gi|284164186|ref|YP_003402465.1| - 0.15 11.7 1.0 0.26 11.0 0.7 1.4 1 0 0 1 1 1 0 Adenylate kinase, active site lid Abhydrolase_6 PF12697.2 gi|284164187|ref|YP_003402466.1| - 2.1e-33 116.1 3.0 2.5e-33 115.8 2.1 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|284164187|ref|YP_003402466.1| - 1.4e-14 54.0 0.0 1.7e-13 50.5 0.0 2.0 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|284164187|ref|YP_003402466.1| - 9.8e-06 25.2 0.1 8.3e-05 22.2 0.0 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.3 gi|284164187|ref|YP_003402466.1| - 0.00028 20.6 0.0 0.00054 19.7 0.0 1.4 1 0 0 1 1 1 1 Putative lysophospholipase Thioesterase PF00975.15 gi|284164187|ref|YP_003402466.1| - 0.0075 16.5 0.0 0.013 15.7 0.0 1.5 1 0 0 1 1 1 1 Thioesterase domain CmcI PF04989.7 gi|284164187|ref|YP_003402466.1| - 0.14 11.4 0.0 0.23 10.7 0.0 1.2 1 0 0 1 1 1 0 Cephalosporin hydroxylase ArgK PF03308.11 gi|284164188|ref|YP_003402467.1| - 7.5e-96 319.9 4.9 9.6e-96 319.6 3.4 1.1 1 0 0 1 1 1 1 ArgK protein cobW PF02492.14 gi|284164188|ref|YP_003402467.1| - 5.2e-09 35.7 1.6 3.9e-08 32.9 1.1 2.1 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain GTP_EFTU PF00009.22 gi|284164188|ref|YP_003402467.1| - 3.2e-06 26.7 0.1 0.0068 15.8 0.0 2.3 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain AAA_17 PF13207.1 gi|284164188|ref|YP_003402467.1| - 9e-06 26.5 2.2 2.5e-05 25.0 0.0 2.5 2 1 0 2 2 2 1 AAA domain SRP54 PF00448.17 gi|284164188|ref|YP_003402467.1| - 1.5e-05 24.4 0.4 5.4e-05 22.7 0.2 1.9 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_16 PF13191.1 gi|284164188|ref|YP_003402467.1| - 3.3e-05 23.9 1.1 0.00021 21.3 0.0 2.5 2 1 0 2 2 2 1 AAA ATPase domain ATP_bind_1 PF03029.12 gi|284164188|ref|YP_003402467.1| - 3.4e-05 23.5 0.0 8.6e-05 22.1 0.0 1.6 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein AAA_19 PF13245.1 gi|284164188|ref|YP_003402467.1| - 6.7e-05 22.5 2.2 0.00075 19.2 0.2 3.0 3 0 0 3 3 3 1 Part of AAA domain AAA_10 PF12846.2 gi|284164188|ref|YP_003402467.1| - 8.9e-05 22.0 0.4 0.00017 21.1 0.3 1.7 1 1 0 1 1 1 1 AAA-like domain NTPase_1 PF03266.10 gi|284164188|ref|YP_003402467.1| - 0.00015 21.5 0.1 0.0004 20.1 0.1 1.7 1 0 0 1 1 1 1 NTPase AAA_30 PF13604.1 gi|284164188|ref|YP_003402467.1| - 0.00021 20.9 0.0 0.00051 19.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|284164188|ref|YP_003402467.1| - 0.00026 21.2 0.6 0.0026 18.0 0.1 2.4 2 1 0 2 2 2 1 AAA domain ABC_tran PF00005.22 gi|284164188|ref|YP_003402467.1| - 0.00064 20.0 0.1 0.0012 19.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter CbiA PF01656.18 gi|284164188|ref|YP_003402467.1| - 0.0012 18.2 0.7 0.0021 17.4 0.5 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_22 PF13401.1 gi|284164188|ref|YP_003402467.1| - 0.0021 18.1 0.0 0.0063 16.6 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|284164188|ref|YP_003402467.1| - 0.0043 16.5 0.1 0.0088 15.5 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain TrwB_AAD_bind PF10412.4 gi|284164188|ref|YP_003402467.1| - 0.0044 15.6 0.1 0.0077 14.8 0.0 1.3 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain AAA_28 PF13521.1 gi|284164188|ref|YP_003402467.1| - 0.006 16.5 0.1 0.006 16.5 0.1 2.0 2 1 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|284164188|ref|YP_003402467.1| - 0.0082 15.3 0.0 0.022 13.9 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function, DUF258 Zeta_toxin PF06414.7 gi|284164188|ref|YP_003402467.1| - 0.013 14.6 0.0 0.026 13.6 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin KTI12 PF08433.5 gi|284164188|ref|YP_003402467.1| - 0.013 14.7 0.0 0.034 13.3 0.0 1.6 2 0 0 2 2 2 0 Chromatin associated protein KTI12 MobB PF03205.9 gi|284164188|ref|YP_003402467.1| - 0.015 14.9 0.2 0.033 13.8 0.1 1.7 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1 PF01926.18 gi|284164188|ref|YP_003402467.1| - 0.016 15.1 0.1 0.036 14.0 0.1 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase KAP_NTPase PF07693.9 gi|284164188|ref|YP_003402467.1| - 0.017 14.1 0.0 0.021 13.7 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain FeoB_N PF02421.13 gi|284164188|ref|YP_003402467.1| - 0.026 13.8 0.0 2.5 7.3 0.0 2.4 2 0 0 2 2 2 0 Ferrous iron transport protein B PRK PF00485.13 gi|284164188|ref|YP_003402467.1| - 0.026 14.0 0.1 0.068 12.7 0.0 1.7 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family NB-ARC PF00931.17 gi|284164188|ref|YP_003402467.1| - 0.038 12.8 0.0 0.064 12.1 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_25 PF13481.1 gi|284164188|ref|YP_003402467.1| - 0.04 13.3 1.5 0.17 11.2 0.1 2.6 2 1 1 3 3 3 0 AAA domain AAA_33 PF13671.1 gi|284164188|ref|YP_003402467.1| - 0.043 13.7 0.1 0.12 12.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|284164188|ref|YP_003402467.1| - 0.058 13.0 0.0 0.14 11.7 0.0 1.6 1 0 0 1 1 1 0 NACHT domain Miro PF08477.8 gi|284164188|ref|YP_003402467.1| - 0.088 13.3 0.0 0.18 12.2 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein AAA_14 PF13173.1 gi|284164188|ref|YP_003402467.1| - 0.13 12.1 0.0 0.3 11.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.12 gi|284164188|ref|YP_003402467.1| - 0.14 11.4 0.0 0.34 10.2 0.0 1.6 2 0 0 2 2 2 0 Thymidylate kinase Viral_helicase1 PF01443.13 gi|284164188|ref|YP_003402467.1| - 0.15 11.5 0.0 0.32 10.4 0.0 1.5 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase B12-binding PF02310.14 gi|284164189|ref|YP_003402468.1| - 4.9e-21 74.8 1.0 5.6e-21 74.6 0.7 1.1 1 0 0 1 1 1 1 B12 binding domain BcrAD_BadFG PF01869.15 gi|284164189|ref|YP_003402468.1| - 0.0074 15.6 0.0 0.016 14.5 0.0 1.5 1 1 1 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family Staph_haemo PF05480.6 gi|284164189|ref|YP_003402468.1| - 0.05 13.2 0.0 0.14 11.8 0.0 1.8 1 0 0 1 1 1 0 Staphylococcus haemolytic protein HD PF01966.17 gi|284164190|ref|YP_003402469.1| - 1.1e-17 64.2 4.5 1.9e-17 63.3 3.1 1.4 1 0 0 1 1 1 1 HD domain HD_4 PF13328.1 gi|284164190|ref|YP_003402469.1| - 0.00082 19.1 0.5 0.0014 18.3 0.4 1.4 1 0 0 1 1 1 1 HD domain TraI_2 PF07514.6 gi|284164190|ref|YP_003402469.1| - 0.067 11.9 0.4 1.3 7.7 0.1 2.2 2 0 0 2 2 2 0 Putative helicase DUF2946 PF11162.3 gi|284164191|ref|YP_003402470.1| - 6.6 6.9 7.0 1.5 9.0 0.6 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2946) LysE PF01810.13 gi|284164192|ref|YP_003402471.1| - 2.2e-27 95.5 10.5 5.3e-26 91.0 7.3 2.0 1 1 0 1 1 1 1 LysE type translocator UPF0197 PF05251.7 gi|284164192|ref|YP_003402471.1| - 0.16 12.3 6.0 0.078 13.2 0.9 2.5 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0197) Methyltransf_3 PF01596.12 gi|284164193|ref|YP_003402472.1| - 1.9e-24 85.8 0.0 2.7e-24 85.3 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_24 PF13578.1 gi|284164193|ref|YP_003402472.1| - 6.7e-17 62.2 0.1 1.2e-16 61.4 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|284164193|ref|YP_003402472.1| - 1.1e-10 42.1 0.0 2.1e-10 41.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|284164193|ref|YP_003402472.1| - 2.1e-09 37.1 0.0 2.7e-09 36.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|284164193|ref|YP_003402472.1| - 2.7e-08 33.8 0.0 5.6e-08 32.8 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|284164193|ref|YP_003402472.1| - 2.4e-06 27.0 0.0 3.2e-06 26.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.14 gi|284164193|ref|YP_003402472.1| - 0.00011 21.8 0.0 0.00015 21.3 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.1 gi|284164193|ref|YP_003402472.1| - 0.00012 22.3 0.0 0.00019 21.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|284164193|ref|YP_003402472.1| - 0.00045 20.6 0.0 0.00081 19.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|284164193|ref|YP_003402472.1| - 0.0095 15.6 0.0 0.016 14.8 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|284164193|ref|YP_003402472.1| - 0.017 14.2 0.0 0.024 13.7 0.0 1.1 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Spermine_synth PF01564.12 gi|284164193|ref|YP_003402472.1| - 0.14 11.0 0.0 0.18 10.7 0.0 1.1 1 0 0 1 1 1 0 Spermine/spermidine synthase O-antigen_lig PF13425.1 gi|284164194|ref|YP_003402473.1| - 0.13 12.2 2.5 0.18 11.8 1.8 1.2 1 0 0 1 1 1 0 O-antigen ligase like membrane protein Bax1-I PF01027.15 gi|284164194|ref|YP_003402473.1| - 0.72 9.4 13.5 0.88 9.1 9.3 1.1 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 PAS_9 PF13426.1 gi|284164195|ref|YP_003402474.1| - 2.4e-64 214.2 0.8 1.9e-13 50.6 0.1 7.0 7 1 0 7 7 6 6 PAS domain PAS_4 PF08448.5 gi|284164195|ref|YP_003402474.1| - 2.3e-63 211.0 40.6 1.1e-14 54.3 0.1 7.6 7 1 0 7 7 7 6 PAS fold PAS PF00989.19 gi|284164195|ref|YP_003402474.1| - 8.8e-49 164.0 3.3 2.1e-12 46.8 0.0 7.0 6 2 0 6 6 6 6 PAS fold PAS_8 PF13188.1 gi|284164195|ref|YP_003402474.1| - 6.9e-33 111.3 4.6 3e-07 30.0 0.0 7.0 6 0 0 6 6 6 6 PAS domain HATPase_c PF02518.21 gi|284164195|ref|YP_003402474.1| - 2.3e-30 104.5 0.0 4.8e-30 103.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.2 gi|284164195|ref|YP_003402474.1| - 3.1e-17 62.6 3.3 4.4e-05 23.4 0.0 7.3 6 2 0 6 6 6 2 PAS fold GAF_3 PF13492.1 gi|284164195|ref|YP_003402474.1| - 2.7e-12 46.9 2.0 2.4e-10 40.6 0.0 4.1 4 0 0 4 4 4 1 GAF domain GAF_2 PF13185.1 gi|284164195|ref|YP_003402474.1| - 3.4e-11 43.8 0.4 3.4e-11 43.8 0.3 4.2 5 0 0 5 5 4 1 GAF domain HisKA PF00512.20 gi|284164195|ref|YP_003402474.1| - 2e-10 40.5 0.2 8.8e-10 38.4 0.1 2.3 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_3 PF08447.6 gi|284164195|ref|YP_003402474.1| - 4.2e-10 39.5 0.0 0.61 10.2 0.0 6.8 6 2 0 6 6 6 2 PAS fold HATPase_c_2 PF13581.1 gi|284164195|ref|YP_003402474.1| - 1.2e-06 28.3 0.3 4.1e-05 23.3 0.0 2.7 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|284164195|ref|YP_003402474.1| - 6e-05 22.6 0.0 0.00012 21.7 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.1 gi|284164195|ref|YP_003402474.1| - 0.059 13.0 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF2930 PF11152.3 gi|284164195|ref|YP_003402474.1| - 0.15 11.1 0.0 0.28 10.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2930) DUF904 PF06005.7 gi|284164195|ref|YP_003402474.1| - 0.61 10.4 5.3 4.9 7.5 0.3 3.6 3 0 0 3 3 3 0 Protein of unknown function (DUF904) Enkurin PF13864.1 gi|284164195|ref|YP_003402474.1| - 7.9 6.7 9.9 11 6.3 0.1 3.4 4 0 0 4 4 3 0 Calmodulin-binding TM_helix PF05552.7 gi|284164198|ref|YP_003402477.1| - 2.2e-19 68.8 6.5 7.5e-13 47.9 0.4 2.7 2 0 0 2 2 2 2 Conserved TM helix Colicin_V PF02674.11 gi|284164198|ref|YP_003402477.1| - 2.1 8.1 18.0 0.45 10.3 3.3 3.3 1 1 2 3 3 3 0 Colicin V production protein Creatininase PF02633.9 gi|284164199|ref|YP_003402478.1| - 1e-65 221.1 0.4 1.1e-65 221.0 0.3 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase NikR_C PF08753.6 gi|284164200|ref|YP_003402479.1| - 1.2e-19 69.9 1.1 1.6e-19 69.5 0.8 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|284164200|ref|YP_003402479.1| - 1.8e-06 27.5 0.0 3.1e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family Cupin_2 PF07883.6 gi|284164201|ref|YP_003402480.1| - 9.2e-12 44.2 0.1 1.3e-11 43.8 0.0 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_6 PF12852.2 gi|284164201|ref|YP_003402480.1| - 0.00013 21.6 0.0 0.00018 21.1 0.0 1.3 1 1 0 1 1 1 1 Cupin AraC_binding PF02311.14 gi|284164201|ref|YP_003402480.1| - 0.00031 20.4 0.0 0.00039 20.1 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain EutQ PF06249.7 gi|284164201|ref|YP_003402480.1| - 0.0014 18.1 0.0 0.0017 17.9 0.0 1.2 1 0 0 1 1 1 1 Ethanolamine utilisation protein EutQ Cupin_3 PF05899.7 gi|284164201|ref|YP_003402480.1| - 0.0034 16.7 0.0 0.0058 15.9 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF861) MannoseP_isomer PF01050.13 gi|284164201|ref|YP_003402480.1| - 0.014 15.0 0.0 0.017 14.7 0.0 1.2 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase GPI PF06560.6 gi|284164201|ref|YP_003402480.1| - 0.084 11.8 0.0 0.13 11.2 0.0 1.3 1 0 0 1 1 1 0 Glucose-6-phosphate isomerase (GPI) AraC_binding_2 PF14525.1 gi|284164201|ref|YP_003402480.1| - 0.1 12.1 0.0 0.12 11.8 0.0 1.1 1 0 0 1 1 1 0 AraC-binding-like domain CENP-C_C PF11699.3 gi|284164201|ref|YP_003402480.1| - 0.15 12.0 0.0 0.2 11.6 0.0 1.2 1 0 0 1 1 1 0 Mif2/CENP-C like DUF3307 PF11750.3 gi|284164202|ref|YP_003402481.1| - 0.058 13.1 1.7 0.35 10.6 0.4 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3307) DUF4382 PF14321.1 gi|284164203|ref|YP_003402482.1| - 7.4e-20 71.4 0.1 1.1e-17 64.3 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4382) TAT_signal PF10518.4 gi|284164203|ref|YP_003402482.1| - 0.0064 16.4 0.3 0.014 15.3 0.2 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Acyl-CoA_dh_1 PF00441.19 gi|284164204|ref|YP_003402483.1| - 1.7e-41 141.7 1.4 5.3e-41 140.2 0.4 2.0 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|284164204|ref|YP_003402483.1| - 2.3e-23 82.8 0.7 4.6e-23 81.9 0.5 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|284164204|ref|YP_003402483.1| - 7.6e-22 76.5 0.2 2.2e-21 75.0 0.1 1.9 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|284164204|ref|YP_003402483.1| - 3e-14 53.4 0.8 5.9e-14 52.4 0.6 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Mor PF08765.6 gi|284164204|ref|YP_003402483.1| - 0.05 13.3 0.1 1.7 8.4 0.0 2.5 2 0 0 2 2 2 0 Mor transcription activator family HalX PF08663.5 gi|284164205|ref|YP_003402484.1| - 5.9e-24 83.8 5.8 1.3e-23 82.7 4.0 1.6 1 0 0 1 1 1 1 HalX domain Response_reg PF00072.19 gi|284164205|ref|YP_003402484.1| - 6.9e-20 71.1 0.3 1.1e-19 70.4 0.2 1.3 1 0 0 1 1 1 1 Response regulator receiver domain MtrG PF04210.8 gi|284164205|ref|YP_003402484.1| - 0.11 12.2 0.5 0.25 11.0 0.0 1.8 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G IncA PF04156.9 gi|284164205|ref|YP_003402484.1| - 0.14 11.7 1.6 0.19 11.3 1.1 1.2 1 0 0 1 1 1 0 IncA protein 3HCDH_N PF02737.13 gi|284164206|ref|YP_003402485.1| - 6.6e-67 224.6 0.5 1.1e-66 223.9 0.3 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH PF00378.15 gi|284164206|ref|YP_003402485.1| - 4.3e-61 206.1 0.0 8.9e-61 205.1 0.0 1.5 2 0 0 2 2 2 1 Enoyl-CoA hydratase/isomerase family 3HCDH PF00725.17 gi|284164206|ref|YP_003402485.1| - 4.6e-51 171.2 0.8 2.4e-33 114.3 0.0 3.5 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|284164206|ref|YP_003402485.1| - 1.8e-10 40.8 0.0 2.9e-10 40.0 0.0 1.3 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.10 gi|284164206|ref|YP_003402485.1| - 1.4e-05 24.9 1.0 5.5e-05 23.0 0.7 2.0 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|284164206|ref|YP_003402485.1| - 0.00049 20.4 3.2 0.0019 18.6 1.4 2.6 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|284164206|ref|YP_003402485.1| - 0.07 12.2 1.4 1.7 7.8 0.5 2.9 2 1 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ECH_C PF13766.1 gi|284164206|ref|YP_003402485.1| - 0.08 13.0 0.1 0.35 11.0 0.0 2.1 2 0 0 2 2 2 0 2-enoyl-CoA Hydratase C-terminal region DLH PF01738.13 gi|284164206|ref|YP_003402485.1| - 0.17 11.1 0.8 12 5.0 0.0 2.3 2 0 0 2 2 2 0 Dienelactone hydrolase family IlvN PF07991.7 gi|284164206|ref|YP_003402485.1| - 0.54 9.6 4.0 12 5.2 2.8 2.3 1 1 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain Acyl-CoA_dh_1 PF00441.19 gi|284164207|ref|YP_003402486.1| - 1.5e-52 177.7 1.2 2.3e-52 177.1 0.9 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|284164207|ref|YP_003402486.1| - 3.6e-32 111.3 0.2 8.9e-32 110.0 0.1 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|284164207|ref|YP_003402486.1| - 5.1e-28 97.9 0.6 7.4e-28 97.4 0.4 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|284164207|ref|YP_003402486.1| - 1.5e-20 72.4 0.2 3.4e-20 71.2 0.1 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain HTH_10 PF04967.7 gi|284164209|ref|YP_003402488.1| - 3.6e-18 64.8 0.1 6.8e-18 63.9 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_30 PF13556.1 gi|284164209|ref|YP_003402488.1| - 0.00015 21.2 0.1 0.00034 20.1 0.0 1.6 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain MarR_2 PF12802.2 gi|284164209|ref|YP_003402488.1| - 0.0016 18.0 0.2 0.0044 16.6 0.1 1.8 2 0 0 2 2 2 1 MarR family HTH_psq PF05225.11 gi|284164209|ref|YP_003402488.1| - 0.0038 16.7 0.7 0.0091 15.5 0.0 2.0 2 0 0 2 2 2 1 helix-turn-helix, Psq domain HTH_24 PF13412.1 gi|284164209|ref|YP_003402488.1| - 0.0066 15.8 0.1 0.011 15.0 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|284164209|ref|YP_003402488.1| - 0.022 14.5 0.0 0.066 13.0 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_1 PF00126.22 gi|284164209|ref|YP_003402488.1| - 0.029 14.1 0.1 0.08 12.6 0.1 1.8 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Sigma70_r4_2 PF08281.7 gi|284164209|ref|YP_003402488.1| - 0.029 13.8 0.2 3.7 7.0 0.0 2.4 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_8 PF02954.14 gi|284164209|ref|YP_003402488.1| - 0.084 12.4 0.3 0.084 12.4 0.2 2.2 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family Sigma70_r4 PF04545.11 gi|284164209|ref|YP_003402488.1| - 0.15 11.4 0.4 0.43 9.9 0.3 1.8 1 1 0 1 1 1 0 Sigma-70, region 4 E1-E2_ATPase PF00122.15 gi|284164210|ref|YP_003402489.1| - 6e-58 195.5 0.1 9.3e-58 194.9 0.0 1.3 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|284164210|ref|YP_003402489.1| - 2.5e-44 152.2 5.6 6.6e-44 150.8 3.9 1.8 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|284164210|ref|YP_003402489.1| - 2.2e-25 88.5 4.0 4.6e-13 49.0 0.0 3.8 4 0 0 4 4 4 2 Heavy-metal-associated domain HAD PF12710.2 gi|284164210|ref|YP_003402489.1| - 1.7e-15 57.7 0.0 4.8e-15 56.2 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|284164210|ref|YP_003402489.1| - 1.7e-06 27.8 1.3 0.012 15.1 0.7 2.4 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|284164210|ref|YP_003402489.1| - 0.09 12.6 0.0 0.51 10.2 0.0 2.3 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Phage_head_chap PF11113.3 gi|284164211|ref|YP_003402490.1| - 0.048 13.5 0.0 0.054 13.3 0.0 1.1 1 0 0 1 1 1 0 Head assembly gene product FAD_binding_2 PF00890.19 gi|284164212|ref|YP_003402491.1| - 1.7e-93 313.7 6.6 2.5e-93 313.2 4.6 1.2 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|284164212|ref|YP_003402491.1| - 5.5e-22 77.9 0.0 1.2e-21 76.9 0.0 1.5 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term DAO PF01266.19 gi|284164212|ref|YP_003402491.1| - 1.8e-10 40.2 4.1 1.4e-09 37.3 2.9 2.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|284164212|ref|YP_003402491.1| - 1.5e-06 28.2 0.0 0.0022 17.9 0.0 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|284164212|ref|YP_003402491.1| - 2.7e-05 22.8 0.4 0.18 10.2 0.4 3.0 3 0 0 3 3 3 2 HI0933-like protein FAD_binding_3 PF01494.14 gi|284164212|ref|YP_003402491.1| - 0.0012 17.9 0.1 0.0019 17.3 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.12 gi|284164212|ref|YP_003402491.1| - 0.002 17.2 0.7 0.77 8.8 0.1 2.3 2 0 0 2 2 2 2 Thi4 family Pyr_redox_3 PF13738.1 gi|284164212|ref|YP_003402491.1| - 0.0059 16.6 0.7 0.025 14.6 0.5 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|284164212|ref|YP_003402491.1| - 0.017 14.6 0.1 0.033 13.6 0.1 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Shikimate_DH PF01488.15 gi|284164212|ref|YP_003402491.1| - 0.02 15.0 0.0 0.041 13.9 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase ThiF PF00899.16 gi|284164212|ref|YP_003402491.1| - 0.036 13.8 0.2 0.076 12.8 0.1 1.5 1 0 0 1 1 1 0 ThiF family GIDA PF01134.17 gi|284164212|ref|YP_003402491.1| - 0.049 12.4 0.2 0.15 10.9 0.3 1.6 2 0 0 2 2 2 0 Glucose inhibited division protein A Lycopene_cycl PF05834.7 gi|284164212|ref|YP_003402491.1| - 0.063 12.1 0.4 0.1 11.5 0.3 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein NAD_binding_8 PF13450.1 gi|284164212|ref|YP_003402491.1| - 0.094 12.7 2.5 0.29 11.1 0.7 2.6 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.1 gi|284164212|ref|YP_003402491.1| - 0.15 12.3 0.0 0.29 11.4 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding HhH-GPD PF00730.20 gi|284164213|ref|YP_003402492.1| - 2.1e-15 56.8 0.0 2.9e-15 56.4 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH_5 PF14520.1 gi|284164213|ref|YP_003402492.1| - 0.043 13.9 0.7 0.31 11.2 0.0 2.3 1 1 2 3 3 3 0 Helix-hairpin-helix domain DehI PF10778.4 gi|284164213|ref|YP_003402492.1| - 0.065 12.7 0.1 0.13 11.7 0.1 1.5 1 0 0 1 1 1 0 Halocarboxylic acid dehydrogenase DehI PRC PF05239.11 gi|284164214|ref|YP_003402493.1| - 0.12 12.2 0.1 0.12 12.2 0.1 3.4 3 0 0 3 3 3 0 PRC-barrel domain peroxidase PF00141.18 gi|284164215|ref|YP_003402494.1| - 4e-90 301.3 0.0 1.7e-49 168.4 0.0 2.2 2 0 0 2 2 2 2 Peroxidase DUF4578 PF15147.1 gi|284164215|ref|YP_003402494.1| - 0.06 13.7 0.0 0.11 12.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4578) RimK PF08443.6 gi|284164216|ref|YP_003402495.1| - 1.2e-28 99.9 0.0 1.8e-28 99.3 0.0 1.3 1 0 0 1 1 1 1 RimK-like ATP-grasp domain Zn_protease PF05618.6 gi|284164216|ref|YP_003402495.1| - 4.8e-10 39.2 0.5 4.4e-08 32.9 0.0 2.3 1 1 1 2 2 2 1 Putative ATP-dependant zinc protease GSH-S_ATP PF02955.11 gi|284164216|ref|YP_003402495.1| - 3e-08 32.9 0.0 5.5e-08 32.1 0.0 1.4 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_4 PF13535.1 gi|284164216|ref|YP_003402495.1| - 3.4e-08 33.4 0.0 7.2e-08 32.3 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|284164216|ref|YP_003402495.1| - 1.9e-07 31.1 0.0 6.3e-07 29.3 0.0 1.9 2 0 0 2 2 2 1 ATP-grasp domain Asp_protease_2 PF13650.1 gi|284164216|ref|YP_003402495.1| - 0.00047 20.5 2.5 0.0011 19.3 0.6 2.4 2 0 0 2 2 2 1 Aspartyl protease ATPgrasp_Ter PF15632.1 gi|284164216|ref|YP_003402495.1| - 0.0038 16.0 0.0 0.3 9.7 0.0 2.1 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon RVP PF00077.15 gi|284164216|ref|YP_003402495.1| - 0.028 14.3 0.1 0.055 13.3 0.1 1.5 1 0 0 1 1 1 0 Retroviral aspartyl protease Polysacc_synt PF01943.12 gi|284164217|ref|YP_003402496.1| - 3.3e-30 105.2 14.0 3.3e-30 105.2 9.7 2.3 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|284164217|ref|YP_003402496.1| - 1.4e-21 76.7 21.6 1.4e-21 76.7 14.9 3.9 2 1 2 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.1 gi|284164217|ref|YP_003402496.1| - 3.6e-08 33.1 19.6 3.6e-08 33.1 13.6 2.2 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein MatE PF01554.13 gi|284164217|ref|YP_003402496.1| - 8.3e-07 28.7 3.9 8.3e-07 28.7 2.7 3.8 3 2 1 4 4 4 2 MatE MVIN PF03023.9 gi|284164217|ref|YP_003402496.1| - 2.3e-06 26.3 23.3 2.1e-05 23.1 16.1 2.3 1 1 0 1 1 1 1 MviN-like protein Acetyltransf_10 PF13673.1 gi|284164219|ref|YP_003402498.1| - 3.2e-09 36.9 0.0 4.7e-09 36.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|284164219|ref|YP_003402498.1| - 9.7e-09 35.2 0.0 1.9e-08 34.3 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|284164219|ref|YP_003402498.1| - 1.4e-07 31.4 0.1 2.2e-07 30.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.1 gi|284164219|ref|YP_003402498.1| - 1.6e-06 28.0 0.1 3.6e-06 26.8 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|284164219|ref|YP_003402498.1| - 0.0016 18.6 0.0 0.0023 18.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|284164219|ref|YP_003402498.1| - 0.0035 17.3 0.0 0.0051 16.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|284164219|ref|YP_003402498.1| - 0.0048 16.8 1.7 0.019 14.9 0.3 2.0 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|284164219|ref|YP_003402498.1| - 0.0085 15.8 0.0 0.017 14.8 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein AstA PF04958.7 gi|284164219|ref|YP_003402498.1| - 0.021 13.2 0.2 0.099 11.0 0.0 2.2 1 1 1 3 3 3 0 Arginine N-succinyltransferase beta subunit Acetyltransf_8 PF13523.1 gi|284164219|ref|YP_003402498.1| - 0.028 14.3 0.0 0.044 13.6 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DNA_RNApol_7kD PF03604.8 gi|284164219|ref|YP_003402498.1| - 0.14 11.6 1.5 0.24 10.8 1.0 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit RNA_POL_M_15KD PF02150.11 gi|284164219|ref|YP_003402498.1| - 0.85 9.3 4.1 1.6 8.5 2.8 1.4 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit AstE_AspA PF04952.9 gi|284164220|ref|YP_003402499.1| - 1.6e-63 214.3 0.0 2.1e-63 213.9 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family DUF354 PF04007.7 gi|284164220|ref|YP_003402499.1| - 0.019 13.8 0.0 0.028 13.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF354) Sdh_cyt PF01127.17 gi|284164221|ref|YP_003402500.1| - 1.9e-23 82.5 4.5 2.1e-23 82.4 3.1 1.0 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit PgaD PF13994.1 gi|284164221|ref|YP_003402500.1| - 0.025 14.0 2.1 0.041 13.3 1.5 1.3 1 0 0 1 1 1 0 PgaD-like protein Ferric_reduct PF01794.14 gi|284164221|ref|YP_003402500.1| - 0.066 13.3 5.6 0.11 12.6 3.9 1.5 1 1 0 1 1 1 0 Ferric reductase like transmembrane component Sdh_cyt PF01127.17 gi|284164222|ref|YP_003402501.1| - 1.6e-12 47.2 5.3 2.2e-12 46.8 3.6 1.1 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Fer2_3 PF13085.1 gi|284164223|ref|YP_003402502.1| - 3.7e-33 113.6 0.4 1.8e-32 111.4 0.0 2.0 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.1 gi|284164223|ref|YP_003402502.1| - 1.8e-11 43.9 3.3 3.6e-11 42.9 2.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|284164223|ref|YP_003402502.1| - 3.2e-06 27.3 3.5 7.5e-06 26.2 2.4 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|284164223|ref|YP_003402502.1| - 5.6e-06 26.6 2.6 8.3e-06 26.0 0.5 2.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|284164223|ref|YP_003402502.1| - 1.1e-05 25.5 2.0 1.1e-05 25.5 1.4 2.4 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|284164223|ref|YP_003402502.1| - 2.8e-05 24.4 5.5 0.026 14.9 0.1 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|284164223|ref|YP_003402502.1| - 0.00044 19.9 8.6 0.0025 17.5 5.9 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|284164223|ref|YP_003402502.1| - 0.0024 18.5 2.8 0.42 11.3 0.5 2.7 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|284164223|ref|YP_003402502.1| - 0.0054 16.5 1.0 0.0054 16.5 0.7 2.8 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_20 PF14691.1 gi|284164223|ref|YP_003402502.1| - 0.022 14.4 5.7 0.55 9.8 0.3 2.4 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_15 PF13459.1 gi|284164223|ref|YP_003402502.1| - 0.15 12.6 3.8 7.2 7.2 0.1 3.2 3 0 0 3 3 2 0 4Fe-4S single cluster domain Fer4_6 PF12837.2 gi|284164223|ref|YP_003402502.1| - 0.26 11.2 9.6 0.28 11.1 1.6 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.22 gi|284164223|ref|YP_003402502.1| - 0.85 9.3 9.5 2.7 7.7 2.0 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain FAD_binding_2 PF00890.19 gi|284164224|ref|YP_003402503.1| - 9.3e-121 403.5 7.7 2e-120 402.4 5.3 1.6 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|284164224|ref|YP_003402503.1| - 2.5e-40 137.3 0.2 4e-40 136.6 0.2 1.3 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.9 gi|284164224|ref|YP_003402503.1| - 7e-08 32.5 12.5 2e-05 24.5 8.7 3.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|284164224|ref|YP_003402503.1| - 5.2e-07 28.8 5.3 2.1e-05 23.5 3.6 2.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|284164224|ref|YP_003402503.1| - 3.6e-05 22.4 0.7 8.8e-05 21.1 0.0 2.0 2 0 0 2 2 2 1 HI0933-like protein GIDA PF01134.17 gi|284164224|ref|YP_003402503.1| - 0.0019 17.1 4.0 0.004 16.0 2.8 1.5 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_3 PF01494.14 gi|284164224|ref|YP_003402503.1| - 0.0067 15.5 1.2 0.014 14.4 0.8 1.5 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.12 gi|284164224|ref|YP_003402503.1| - 0.0093 15.0 5.6 0.012 14.7 0.4 2.7 3 0 0 3 3 3 1 Thi4 family AlaDh_PNT_C PF01262.16 gi|284164224|ref|YP_003402503.1| - 0.016 14.8 0.1 0.029 13.9 0.1 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.22 gi|284164224|ref|YP_003402503.1| - 0.017 15.5 1.0 0.05 14.0 0.7 1.8 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Ku_PK_bind PF08785.6 gi|284164224|ref|YP_003402503.1| - 0.024 14.5 0.1 0.06 13.2 0.1 1.6 2 0 0 2 2 2 0 Ku C terminal domain like FAD_oxidored PF12831.2 gi|284164224|ref|YP_003402503.1| - 0.048 12.7 10.0 0.15 11.1 6.9 2.0 1 1 0 1 1 1 0 FAD dependent oxidoreductase NAD_binding_7 PF13241.1 gi|284164224|ref|YP_003402503.1| - 0.13 12.5 0.1 0.34 11.2 0.0 1.8 2 0 0 2 2 2 0 Putative NAD(P)-binding Pyr_redox_3 PF13738.1 gi|284164224|ref|YP_003402503.1| - 6.1 6.8 6.5 2.5 8.1 1.2 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Steroid_dh PF02544.11 gi|284164225|ref|YP_003402504.1| - 0.082 12.6 0.1 0.11 12.3 0.1 1.2 1 0 0 1 1 1 0 3-oxo-5-alpha-steroid 4-dehydrogenase DUF1427 PF07235.6 gi|284164226|ref|YP_003402505.1| - 7e-06 26.0 2.3 7.9e-06 25.8 1.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1427) TrmB PF01978.14 gi|284164227|ref|YP_003402506.1| - 0.0031 17.1 0.0 0.0039 16.8 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|284164227|ref|YP_003402506.1| - 0.02 14.5 0.1 0.025 14.2 0.0 1.1 1 0 0 1 1 1 0 MarR family HTH_36 PF13730.1 gi|284164227|ref|YP_003402506.1| - 0.029 14.5 0.0 0.045 13.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.1 gi|284164227|ref|YP_003402506.1| - 0.066 13.5 0.0 0.081 13.2 0.0 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain HD PF01966.17 gi|284164228|ref|YP_003402507.1| - 1.9e-09 37.5 2.0 3.6e-09 36.6 1.4 1.4 1 0 0 1 1 1 1 HD domain AhpC-TSA PF00578.16 gi|284164229|ref|YP_003402508.1| - 4.1e-33 113.7 0.0 4.7e-33 113.4 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|284164229|ref|YP_003402508.1| - 4.5e-22 78.1 0.0 5e-22 78.0 0.0 1.0 1 0 0 1 1 1 1 Redoxin DUF899 PF05988.7 gi|284164229|ref|YP_003402508.1| - 0.00015 21.2 0.0 0.0002 20.8 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) Varsurf_PPLC PF03490.8 gi|284164229|ref|YP_003402508.1| - 0.0036 16.9 0.6 0.1 12.2 0.0 2.7 3 1 0 3 3 3 1 Variant-surface-glycoprotein phospholipase C MttA_Hcf106 PF02416.11 gi|284164230|ref|YP_003402509.1| - 2.3e-14 52.2 5.7 6.9e-14 50.6 4.0 1.8 1 1 0 1 1 1 1 mttA/Hcf106 family Acyl-CoA_dh_1 PF00441.19 gi|284164232|ref|YP_003402511.1| - 4.3e-37 127.5 0.9 7.5e-37 126.7 0.6 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|284164232|ref|YP_003402511.1| - 1.4e-16 59.7 1.6 3.6e-12 45.5 0.2 2.5 2 0 0 2 2 2 2 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|284164232|ref|YP_003402511.1| - 1.4e-12 48.0 0.9 1.4e-12 48.0 0.6 2.2 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|284164232|ref|YP_003402511.1| - 6.9e-11 42.7 1.2 6.9e-11 42.7 0.8 1.9 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain ATP-synt_DE PF00401.15 gi|284164232|ref|YP_003402511.1| - 1.1 9.2 6.9 2.2 8.2 1.1 2.9 2 0 0 2 2 2 0 ATP synthase, Delta/Epsilon chain, long alpha-helix domain adh_short PF00106.20 gi|284164233|ref|YP_003402512.1| - 9.2e-35 120.0 5.6 1.2e-34 119.6 3.9 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|284164233|ref|YP_003402512.1| - 9.1e-31 107.4 0.0 1.1e-30 107.2 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|284164233|ref|YP_003402512.1| - 5.1e-16 58.8 2.5 7.2e-16 58.3 1.8 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|284164233|ref|YP_003402512.1| - 3.5e-05 23.3 0.7 5e-05 22.8 0.5 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|284164233|ref|YP_003402512.1| - 0.0085 16.1 9.1 0.029 14.3 6.3 1.8 1 1 0 1 1 1 1 NADH(P)-binding THF_DHG_CYH_C PF02882.14 gi|284164233|ref|YP_003402512.1| - 0.02 13.9 1.2 0.031 13.3 0.8 1.3 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 3Beta_HSD PF01073.14 gi|284164233|ref|YP_003402512.1| - 0.045 12.4 0.4 0.066 11.9 0.3 1.2 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|284164233|ref|YP_003402512.1| - 0.23 10.3 1.4 0.34 9.7 1.0 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain T2SE PF00437.15 gi|284164234|ref|YP_003402513.1| - 7e-44 149.7 0.0 1.1e-43 149.0 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|284164234|ref|YP_003402513.1| - 0.00016 21.1 0.1 0.00032 20.1 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain T2SF PF00482.18 gi|284164235|ref|YP_003402514.1| - 6.9e-25 87.3 14.6 3.6e-14 52.7 0.3 3.3 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F DUF1183 PF06682.7 gi|284164235|ref|YP_003402514.1| - 0.2 11.2 0.1 0.59 9.6 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1183) Nramp PF01566.13 gi|284164237|ref|YP_003402516.1| - 0.02 13.6 0.0 0.029 13.1 0.0 1.1 1 0 0 1 1 1 0 Natural resistance-associated macrophage protein Macoilin PF09726.4 gi|284164241|ref|YP_003402520.1| - 5.9 5.0 5.7 7.9 4.6 4.0 1.1 1 0 0 1 1 1 0 Transmembrane protein CheR PF01739.13 gi|284164242|ref|YP_003402521.1| - 9e-47 158.8 0.0 1.2e-46 158.4 0.0 1.2 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.10 gi|284164242|ref|YP_003402521.1| - 1.1e-10 40.6 1.6 2.1e-10 39.7 0.4 2.1 2 0 0 2 2 2 1 CheR methyltransferase, all-alpha domain Methyltransf_12 PF08242.7 gi|284164242|ref|YP_003402521.1| - 1e-07 32.3 0.0 2.3e-05 24.8 0.0 2.4 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|284164242|ref|YP_003402521.1| - 1.2e-06 29.0 0.0 2.1e-06 28.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|284164242|ref|YP_003402521.1| - 2.1e-05 24.1 0.0 0.0045 16.5 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|284164242|ref|YP_003402521.1| - 0.00022 21.5 0.0 0.001 19.3 0.0 2.1 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|284164242|ref|YP_003402521.1| - 0.00045 20.6 0.0 0.0081 16.6 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|284164242|ref|YP_003402521.1| - 0.0019 17.9 0.0 0.0028 17.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.6 gi|284164242|ref|YP_003402521.1| - 0.053 12.9 0.0 0.082 12.2 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) TehB PF03848.9 gi|284164242|ref|YP_003402521.1| - 0.054 12.6 0.0 0.21 10.7 0.0 1.8 1 1 1 2 2 2 0 Tellurite resistance protein TehB Methyltransf_20 PF12147.3 gi|284164242|ref|YP_003402521.1| - 0.055 12.3 0.0 3 6.6 0.0 2.1 1 1 1 2 2 2 0 Putative methyltransferase DUF1690 PF07956.6 gi|284164242|ref|YP_003402521.1| - 0.14 12.1 0.1 0.23 11.4 0.1 1.3 1 0 0 1 1 1 0 Protein of Unknown function (DUF1690) CheD PF03975.8 gi|284164243|ref|YP_003402522.1| - 2.7e-32 110.8 0.0 3.6e-32 110.5 0.0 1.1 1 0 0 1 1 1 1 CheD chemotactic sensory transduction CheC PF04509.7 gi|284164244|ref|YP_003402523.1| - 9.9e-20 69.9 0.5 9.6e-13 47.6 0.0 2.5 2 0 0 2 2 2 2 CheC-like family CheX PF13690.1 gi|284164244|ref|YP_003402523.1| - 1.2e-13 50.7 1.0 4e-07 29.8 0.0 2.4 2 0 0 2 2 2 2 Chemotaxis phosphatase CheX CheC PF04509.7 gi|284164245|ref|YP_003402524.1| - 4.2e-12 45.5 0.1 1.4e-11 43.9 0.0 1.9 2 0 0 2 2 2 1 CheC-like family CheX PF13690.1 gi|284164245|ref|YP_003402524.1| - 6e-06 26.0 0.0 1.2e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 Chemotaxis phosphatase CheX Hen1_L PF12623.2 gi|284164245|ref|YP_003402524.1| - 0.095 11.4 0.0 0.14 10.8 0.0 1.2 1 0 0 1 1 1 0 RNA repair, ligase-Pnkp-associating, region of Hen1 Hpt PF01627.18 gi|284164246|ref|YP_003402525.1| - 2.8e-25 88.1 6.2 5.8e-24 83.9 0.2 3.6 3 0 0 3 3 3 2 Hpt domain HATPase_c PF02518.21 gi|284164246|ref|YP_003402525.1| - 1.4e-23 82.7 0.1 2.9e-23 81.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CheW PF01584.14 gi|284164246|ref|YP_003402525.1| - 9.1e-12 44.6 0.3 1.9e-11 43.5 0.2 1.6 1 0 0 1 1 1 1 CheW-like domain H-kinase_dim PF02895.9 gi|284164246|ref|YP_003402525.1| - 1e-11 45.0 4.7 1e-11 45.0 3.2 2.5 2 0 0 2 2 2 1 Signal transducing histidine kinase, homodimeric domain P2 PF07194.6 gi|284164246|ref|YP_003402525.1| - 7.5e-07 28.9 0.0 4.1e-06 26.5 0.0 2.3 1 0 0 1 1 1 1 P2 response regulator binding domain HATPase_c_2 PF13581.1 gi|284164246|ref|YP_003402525.1| - 3.8e-05 23.4 0.3 0.00018 21.3 0.2 2.3 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain CheB_methylest PF01339.12 gi|284164247|ref|YP_003402526.1| - 6.3e-60 201.7 0.6 1.4e-59 200.6 0.2 1.7 2 0 0 2 2 2 1 CheB methylesterase Response_reg PF00072.19 gi|284164247|ref|YP_003402526.1| - 4.5e-24 84.6 0.1 1.3e-23 83.0 0.1 1.8 1 0 0 1 1 1 1 Response regulator receiver domain Response_reg PF00072.19 gi|284164248|ref|YP_003402527.1| - 2.2e-30 104.9 0.2 2.5e-30 104.7 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain B12-binding PF02310.14 gi|284164248|ref|YP_003402527.1| - 0.0084 15.9 0.0 0.011 15.5 0.0 1.2 1 0 0 1 1 1 1 B12 binding domain CheW PF01584.14 gi|284164249|ref|YP_003402528.1| - 4e-20 71.6 0.3 1.2e-19 70.1 0.2 1.7 2 0 0 2 2 2 1 CheW-like domain CheW PF01584.14 gi|284164250|ref|YP_003402529.1| - 4.8e-14 52.0 0.0 6.5e-14 51.5 0.0 1.0 1 0 0 1 1 1 1 CheW-like domain DUF4366 PF14283.1 gi|284164251|ref|YP_003402530.1| - 0.05 13.0 0.0 0.11 11.9 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4366) DUF2110 PF09883.4 gi|284164252|ref|YP_003402531.1| - 6.2e-89 297.4 0.0 7.2e-89 297.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2110) PTS-HPr PF00381.14 gi|284164252|ref|YP_003402531.1| - 0.11 12.3 0.1 19 5.2 0.0 2.5 2 0 0 2 2 2 0 PTS HPr component phosphorylation site TFIIE_alpha PF02002.12 gi|284164253|ref|YP_003402532.1| - 2.2e-19 68.8 0.1 4.3e-19 67.9 0.1 1.4 2 0 0 2 2 2 1 TFIIE alpha subunit Sigma70_r3 PF04539.11 gi|284164253|ref|YP_003402532.1| - 0.0031 17.3 0.1 0.0086 15.9 0.1 1.7 1 0 0 1 1 1 1 Sigma-70 region 3 DNA_ligase_ZBD PF03119.11 gi|284164253|ref|YP_003402532.1| - 0.0052 16.4 0.2 0.011 15.4 0.2 1.5 1 0 0 1 1 1 1 NAD-dependent DNA ligase C4 zinc finger domain Rad50_zn_hook PF04423.9 gi|284164253|ref|YP_003402532.1| - 0.013 14.9 0.3 0.13 11.7 0.0 2.4 2 0 0 2 2 2 0 Rad50 zinc hook motif TF_Zn_Ribbon PF08271.7 gi|284164253|ref|YP_003402532.1| - 0.06 12.6 1.6 0.73 9.2 0.1 2.7 2 0 0 2 2 2 0 TFIIB zinc-binding HTH_20 PF12840.2 gi|284164253|ref|YP_003402532.1| - 0.069 12.9 0.2 0.28 11.0 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain zinc-ribbons_6 PF07191.7 gi|284164253|ref|YP_003402532.1| - 0.095 12.5 0.1 0.21 11.3 0.1 1.5 1 1 0 1 1 1 0 zinc-ribbons zf-C2H2_6 PF13912.1 gi|284164253|ref|YP_003402532.1| - 0.12 12.2 1.4 2.9 7.9 0.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger zf-Mss51 PF13824.1 gi|284164253|ref|YP_003402532.1| - 0.25 11.2 1.4 0.67 9.8 0.4 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 CbiM PF01891.11 gi|284164254|ref|YP_003402533.1| - 0.011 15.3 3.3 0.011 15.2 2.3 1.0 1 0 0 1 1 1 0 Cobalt uptake substrate-specific transmembrane region CoA_binding_3 PF13727.1 gi|284164254|ref|YP_003402533.1| - 0.072 12.9 2.2 0.08 12.7 1.5 1.0 1 0 0 1 1 1 0 CoA-binding domain DUF4282 PF14110.1 gi|284164254|ref|YP_003402533.1| - 1.5 9.0 8.2 1.8 8.8 5.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) AMP-binding PF00501.23 gi|284164255|ref|YP_003402534.1| - 5.2e-104 347.9 0.2 6.1e-104 347.7 0.1 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|284164255|ref|YP_003402534.1| - 2.3e-18 66.8 0.4 2.3e-18 66.8 0.3 1.8 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain Trm56 PF01994.11 gi|284164257|ref|YP_003402536.1| - 6.2e-48 161.5 0.0 8.1e-48 161.1 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 HATPase_c PF02518.21 gi|284164258|ref|YP_003402537.1| - 7.2e-32 109.4 0.0 1.6e-31 108.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF PF01590.21 gi|284164258|ref|YP_003402537.1| - 1.5e-14 54.4 3.0 5.3e-13 49.3 0.1 3.2 4 0 0 4 4 4 1 GAF domain PAS_9 PF13426.1 gi|284164258|ref|YP_003402537.1| - 5.1e-12 46.0 0.0 1.5e-11 44.6 0.0 1.9 1 0 0 1 1 1 1 PAS domain GAF_2 PF13185.1 gi|284164258|ref|YP_003402537.1| - 3e-10 40.7 3.4 2.6e-09 37.7 0.1 3.2 3 0 0 3 3 2 1 GAF domain HisKA PF00512.20 gi|284164258|ref|YP_003402537.1| - 1.1e-09 38.1 0.1 1.1e-09 38.1 0.1 3.6 2 1 1 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|284164258|ref|YP_003402537.1| - 3e-09 36.8 0.1 9.6e-09 35.2 0.1 1.9 1 0 0 1 1 1 1 PAS fold GAF_3 PF13492.1 gi|284164258|ref|YP_003402537.1| - 8.2e-08 32.4 1.1 3.3e-07 30.4 0.0 2.4 2 0 0 2 2 2 1 GAF domain PAS PF00989.19 gi|284164258|ref|YP_003402537.1| - 4.3e-07 29.6 0.0 1.4e-06 28.0 0.0 2.0 1 0 0 1 1 1 1 PAS fold PAS_3 PF08447.6 gi|284164258|ref|YP_003402537.1| - 2.6e-05 24.2 0.1 0.00099 19.1 0.0 2.8 2 1 0 2 2 2 1 PAS fold HATPase_c_5 PF14501.1 gi|284164258|ref|YP_003402537.1| - 0.00017 21.2 0.0 0.00043 19.9 0.0 1.7 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.1 gi|284164258|ref|YP_003402537.1| - 0.0007 19.3 0.1 0.0021 17.8 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|284164258|ref|YP_003402537.1| - 0.00072 19.2 0.0 0.0016 18.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|284164258|ref|YP_003402537.1| - 0.0022 17.7 0.0 0.0081 15.9 0.0 2.0 1 0 0 1 1 1 1 PAS domain Spc7 PF08317.6 gi|284164258|ref|YP_003402537.1| - 0.0097 14.6 2.0 0.22 10.1 0.3 2.4 2 0 0 2 2 2 1 Spc7 kinetochore protein CASP_C PF08172.7 gi|284164258|ref|YP_003402537.1| - 0.06 12.3 6.9 0.012 14.6 1.7 2.0 2 0 0 2 2 2 0 CASP C terminal Streptin-Immun PF11083.3 gi|284164258|ref|YP_003402537.1| - 0.45 10.5 4.5 6.2 6.8 0.6 2.5 2 0 0 2 2 2 0 Lantibiotic streptin immunity protein PilJ PF13675.1 gi|284164258|ref|YP_003402537.1| - 0.71 10.2 13.6 1.9 8.8 1.5 3.2 3 0 0 3 3 3 0 Type IV pili methyl-accepting chemotaxis transducer N-term DUF1469 PF07332.6 gi|284164258|ref|YP_003402537.1| - 1.1 8.9 9.3 0.3 10.8 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) bZIP_1 PF00170.16 gi|284164258|ref|YP_003402537.1| - 1.3 9.0 17.2 0.56 10.1 2.3 3.0 3 0 0 3 3 2 0 bZIP transcription factor PGBA_C PF15437.1 gi|284164258|ref|YP_003402537.1| - 2.7 8.1 14.9 0.53 10.4 2.4 2.6 2 0 0 2 2 2 0 Plasminogen-binding protein pgbA C-terminal VIT1 PF01988.14 gi|284164258|ref|YP_003402537.1| - 4 6.8 6.3 2.8 7.3 0.0 2.7 3 0 0 3 3 2 0 VIT family DUF2203 PF09969.4 gi|284164258|ref|YP_003402537.1| - 4.5 7.5 7.8 11 6.2 0.9 3.1 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2203) Cupin_2 PF07883.6 gi|284164259|ref|YP_003402538.1| - 1.4e-16 59.6 0.0 2.2e-16 59.0 0.0 1.3 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.7 gi|284164259|ref|YP_003402538.1| - 0.00074 18.8 0.0 0.0019 17.5 0.0 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF861) AraC_binding PF02311.14 gi|284164259|ref|YP_003402538.1| - 0.0041 16.7 0.0 0.0061 16.2 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.17 gi|284164259|ref|YP_003402538.1| - 0.023 14.1 0.0 0.036 13.4 0.0 1.3 1 0 0 1 1 1 0 Cupin DUF1785 PF08699.5 gi|284164260|ref|YP_003402539.1| - 0.11 11.8 0.1 0.16 11.3 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1785) Usp PF00582.21 gi|284164261|ref|YP_003402540.1| - 8.3e-38 129.7 1.7 9.5e-38 129.5 1.2 1.0 1 0 0 1 1 1 1 Universal stress protein family ETF PF01012.16 gi|284164261|ref|YP_003402540.1| - 0.00064 19.4 1.3 0.051 13.2 0.9 2.1 1 1 0 1 1 1 1 Electron transfer flavoprotein domain FMN_red PF03358.10 gi|284164261|ref|YP_003402540.1| - 0.029 13.8 0.4 0.32 10.5 0.1 2.0 2 0 0 2 2 2 0 NADPH-dependent FMN reductase SSF PF00474.12 gi|284164262|ref|YP_003402541.1| - 9.6e-52 175.9 29.3 1.4e-51 175.4 20.3 1.3 1 0 0 1 1 1 1 Sodium:solute symporter family DUF4212 PF13937.1 gi|284164263|ref|YP_003402542.1| - 7.8e-26 89.8 0.0 9.7e-26 89.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4212) DUF485 PF04341.7 gi|284164263|ref|YP_003402542.1| - 0.03 14.0 0.2 0.046 13.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF485 AMP-binding PF00501.23 gi|284164264|ref|YP_003402543.1| - 1e-93 313.9 0.1 1.3e-93 313.7 0.1 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|284164264|ref|YP_003402543.1| - 1.8e-15 57.6 0.6 1.8e-15 57.6 0.4 2.2 3 0 0 3 3 3 1 AMP-binding enzyme C-terminal domain HTH_10 PF04967.7 gi|284164265|ref|YP_003402544.1| - 1.9e-17 62.5 0.1 4.9e-17 61.2 0.0 1.8 2 0 0 2 2 2 1 HTH DNA binding domain PAS_9 PF13426.1 gi|284164265|ref|YP_003402544.1| - 8.2e-15 55.0 0.0 2.2e-14 53.6 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|284164265|ref|YP_003402544.1| - 3.2e-10 39.9 0.6 1.7e-09 37.7 0.4 2.3 1 0 0 1 1 1 1 PAS fold Phage_integrase PF00589.17 gi|284164265|ref|YP_003402544.1| - 1e-09 38.2 0.0 2.6e-09 37.0 0.0 1.6 2 0 0 2 2 2 1 Phage integrase family PAS PF00989.19 gi|284164265|ref|YP_003402544.1| - 1.4e-09 37.7 0.1 4.4e-09 36.1 0.0 1.9 2 0 0 2 2 2 1 PAS fold GAF_2 PF13185.1 gi|284164265|ref|YP_003402544.1| - 1e-06 29.2 0.4 3e-06 27.7 0.3 1.9 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.1 gi|284164265|ref|YP_003402544.1| - 0.00027 21.0 0.1 0.0015 18.5 0.0 2.4 2 1 1 3 3 3 1 GAF domain PAS_10 PF13596.1 gi|284164265|ref|YP_003402544.1| - 0.0023 18.1 0.0 0.0051 17.0 0.0 1.6 1 0 0 1 1 1 1 PAS domain HTH_20 PF12840.2 gi|284164265|ref|YP_003402544.1| - 0.0084 15.8 0.0 0.037 13.8 0.0 2.1 1 0 0 1 1 1 1 Helix-turn-helix domain PAS_8 PF13188.1 gi|284164265|ref|YP_003402544.1| - 0.011 15.5 0.0 0.044 13.6 0.0 2.1 1 0 0 1 1 1 0 PAS domain Sigma70_r4 PF04545.11 gi|284164265|ref|YP_003402544.1| - 0.014 14.6 0.0 0.065 12.5 0.0 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 Sigma70_r4_2 PF08281.7 gi|284164265|ref|YP_003402544.1| - 0.032 13.6 0.0 0.098 12.1 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_5 PF01022.15 gi|284164265|ref|YP_003402544.1| - 0.07 12.8 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|284164265|ref|YP_003402544.1| - 0.14 11.5 0.0 0.35 10.3 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding GerE PF00196.14 gi|284164265|ref|YP_003402544.1| - 0.16 11.3 0.0 0.39 10.0 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family AMP-binding PF00501.23 gi|284164266|ref|YP_003402545.1| - 1.4e-92 310.2 0.1 1.7e-92 310.0 0.1 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|284164266|ref|YP_003402545.1| - 3.5e-16 59.9 0.2 7.3e-16 58.8 0.2 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Na_H_Exchanger PF00999.16 gi|284164267|ref|YP_003402546.1| - 3e-54 183.9 50.3 3.9e-54 183.6 34.9 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Usp PF00582.21 gi|284164267|ref|YP_003402546.1| - 4.4e-11 43.1 1.5 8.1e-11 42.2 0.6 1.7 2 0 0 2 2 2 1 Universal stress protein family Usp PF00582.21 gi|284164268|ref|YP_003402547.1| - 4.4e-12 46.3 0.4 5.2e-12 46.1 0.3 1.1 1 0 0 1 1 1 1 Universal stress protein family ETF PF01012.16 gi|284164268|ref|YP_003402547.1| - 0.0084 15.8 0.5 0.92 9.2 0.3 2.7 1 1 0 1 1 1 1 Electron transfer flavoprotein domain DUF2299 PF10061.4 gi|284164269|ref|YP_003402548.1| - 0.0013 18.1 0.0 0.0018 17.6 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2299) FHIPEP PF00771.15 gi|284164271|ref|YP_003402550.1| - 6 5.0 6.0 1.6 6.9 0.1 2.1 2 0 0 2 2 2 0 FHIPEP family Rick_17kDa_Anti PF05433.10 gi|284164272|ref|YP_003402551.1| - 0.04 13.5 0.2 0.065 12.9 0.1 1.3 1 0 0 1 1 1 0 Glycine zipper 2TM domain Gly-zipper_Omp PF13488.1 gi|284164272|ref|YP_003402551.1| - 0.044 13.4 2.5 0.076 12.6 1.7 1.3 1 0 0 1 1 1 0 Glycine zipper Gly-zipper_YMGG PF13441.1 gi|284164272|ref|YP_003402551.1| - 0.17 11.4 2.2 0.27 10.7 1.5 1.2 1 0 0 1 1 1 0 YMGG-like Gly-zipper MtrG PF04210.8 gi|284164272|ref|YP_003402551.1| - 0.28 10.8 3.2 2.3 7.9 2.2 2.3 1 1 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, subunit G Band_7 PF01145.20 gi|284164272|ref|YP_003402551.1| - 1.5 8.6 7.9 10 5.9 5.4 2.1 1 1 0 1 1 1 0 SPFH domain / Band 7 family DUF2076 PF09849.4 gi|284164272|ref|YP_003402551.1| - 2.6 8.0 20.8 4.2 7.3 14.4 1.4 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2076) Hid1 PF12722.2 gi|284164272|ref|YP_003402551.1| - 2.7 5.5 11.3 2.7 5.5 7.9 1.1 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein CENP-T PF15511.1 gi|284164272|ref|YP_003402551.1| - 6 6.0 36.8 6.3 5.9 25.5 1.1 1 0 0 1 1 1 0 Centromere kinetochore component CENP-T PQQ_2 PF13360.1 gi|284164274|ref|YP_003402553.1| - 4.2e-17 62.4 24.7 1.4e-08 34.5 2.5 2.9 1 1 2 3 3 3 3 PQQ-like domain PQQ PF01011.16 gi|284164274|ref|YP_003402553.1| - 1.4e-10 40.1 9.2 4.2e-06 26.0 0.1 5.2 5 0 0 5 5 5 2 PQQ enzyme repeat PQQ_3 PF13570.1 gi|284164274|ref|YP_003402553.1| - 4.9e-06 26.6 24.1 3.1 8.1 0.3 8.4 8 1 0 8 8 8 4 PQQ-like domain Arylsulfotrans PF05935.6 gi|284164274|ref|YP_003402553.1| - 0.015 13.8 0.1 0.039 12.4 0.0 1.8 2 0 0 2 2 2 0 Arylsulfotransferase (ASST) DUF3209 PF11483.3 gi|284164275|ref|YP_003402554.1| - 2.6e-58 195.6 4.5 2.8e-58 195.5 3.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3209) CbiX PF01903.12 gi|284164276|ref|YP_003402555.1| - 1e-43 147.7 0.0 1.7e-20 73.0 0.1 2.5 2 0 0 2 2 2 2 CbiX 2Fe-2S_thioredx PF01257.14 gi|284164276|ref|YP_003402555.1| - 6.3e-08 32.3 0.1 1.1e-07 31.5 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin CbiK PF06180.6 gi|284164276|ref|YP_003402555.1| - 7.4e-05 21.9 0.0 0.31 10.1 0.0 2.1 2 0 0 2 2 2 2 Cobalt chelatase (CbiK) Suc_Fer-like PF06999.7 gi|284164276|ref|YP_003402555.1| - 0.005 16.9 0.0 0.013 15.5 0.0 1.7 2 0 0 2 2 2 1 Sucrase/ferredoxin-like TPP_enzyme_M PF00205.17 gi|284164276|ref|YP_003402555.1| - 0.076 12.7 0.0 2.9 7.6 0.0 2.4 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain DUF1876 PF08962.6 gi|284164276|ref|YP_003402555.1| - 0.69 9.7 4.7 0.79 9.5 0.2 3.1 4 0 0 4 4 4 0 Domain of unknown function (DUF1876) LAGLIDADG_3 PF14528.1 gi|284164277|ref|YP_003402556.1| - 0.019 15.1 0.0 0.11 12.7 0.0 2.0 2 0 0 2 2 2 0 LAGLIDADG-like domain Fer4_15 PF13459.1 gi|284164278|ref|YP_003402557.1| - 4.6e-13 49.5 7.6 6.7e-13 49.0 5.3 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_19 PF06902.6 gi|284164278|ref|YP_003402557.1| - 0.0036 17.1 0.7 0.46 10.3 0.5 2.2 1 1 0 1 1 1 1 Divergent 4Fe-4S mono-cluster Fer4_13 PF13370.1 gi|284164278|ref|YP_003402557.1| - 0.0042 17.4 5.0 0.0075 16.6 3.5 1.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain DUF3534 PF12053.3 gi|284164278|ref|YP_003402557.1| - 0.062 13.1 2.1 0.075 12.9 1.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3534) Fer4_6 PF12837.2 gi|284164278|ref|YP_003402557.1| - 1.3 9.0 7.3 11 6.0 0.1 3.5 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4 PF00037.22 gi|284164278|ref|YP_003402557.1| - 2.8 7.7 4.9 1.3 8.7 0.4 2.5 3 0 0 3 3 3 0 4Fe-4S binding domain TP_methylase PF00590.15 gi|284164279|ref|YP_003402558.1| - 1.9e-37 128.9 0.1 2.4e-37 128.7 0.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TP_methylase PF00590.15 gi|284164280|ref|YP_003402559.1| - 7.3e-40 136.9 0.1 8.7e-40 136.6 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiG_N PF11760.3 gi|284164281|ref|YP_003402560.1| - 2.4e-30 104.0 0.1 9.2e-30 102.1 0.0 2.0 2 0 0 2 2 2 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.11 gi|284164281|ref|YP_003402560.1| - 5.9e-27 94.3 0.0 1.3e-26 93.1 0.0 1.6 1 0 0 1 1 1 1 Cobalamin synthesis G C-terminus AIRS PF00586.19 gi|284164281|ref|YP_003402560.1| - 0.036 14.3 0.2 0.1 12.8 0.2 1.7 1 0 0 1 1 1 0 AIR synthase related protein, N-terminal domain TP_methylase PF00590.15 gi|284164282|ref|YP_003402561.1| - 8.4e-36 123.6 0.1 1e-35 123.3 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.16 gi|284164282|ref|YP_003402561.1| - 0.022 14.9 0.1 0.082 13.0 0.0 1.8 1 1 1 2 2 2 0 Radical SAM superfamily DUF4250 PF14056.1 gi|284164282|ref|YP_003402561.1| - 0.15 11.8 0.1 0.36 10.5 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4250) TP_methylase PF00590.15 gi|284164283|ref|YP_003402562.1| - 1.1e-35 123.3 0.5 1.7e-35 122.6 0.1 1.5 2 0 0 2 2 2 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Methyltransf_18 PF12847.2 gi|284164284|ref|YP_003402563.1| - 1.5e-09 38.4 0.3 2.2e-09 37.8 0.2 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|284164284|ref|YP_003402563.1| - 0.00013 21.4 0.2 0.00027 20.3 0.1 1.5 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_25 PF13649.1 gi|284164284|ref|YP_003402563.1| - 0.001 19.3 0.0 0.0017 18.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|284164284|ref|YP_003402563.1| - 0.0024 17.8 0.4 0.0036 17.3 0.3 1.4 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|284164284|ref|YP_003402563.1| - 0.0041 16.2 0.1 0.0055 15.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_11 PF08241.7 gi|284164284|ref|YP_003402563.1| - 0.0049 17.3 0.1 0.0097 16.3 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|284164284|ref|YP_003402563.1| - 0.0092 15.5 0.0 0.011 15.2 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GATase_3 PF07685.9 gi|284164284|ref|YP_003402563.1| - 0.063 12.8 0.0 0.15 11.6 0.0 1.6 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain DOT1 PF08123.8 gi|284164284|ref|YP_003402563.1| - 0.14 11.4 0.0 0.21 10.8 0.0 1.2 1 0 0 1 1 1 0 Histone methylation protein DOT1 adh_short PF00106.20 gi|284164285|ref|YP_003402564.1| - 2e-43 148.2 0.1 2.5e-43 147.9 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|284164285|ref|YP_003402564.1| - 1.2e-27 97.2 0.0 1.3e-27 97.0 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|284164285|ref|YP_003402564.1| - 7.3e-23 81.1 0.1 1e-22 80.6 0.0 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|284164285|ref|YP_003402564.1| - 0.00012 21.6 0.1 0.00016 21.1 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|284164285|ref|YP_003402564.1| - 0.12 12.3 1.1 0.27 11.2 0.7 1.6 1 1 0 1 1 1 0 NADH(P)-binding Glyco_transf_21 PF13506.1 gi|284164286|ref|YP_003402565.1| - 5.8e-11 41.9 0.0 1e-10 41.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_3 PF13641.1 gi|284164286|ref|YP_003402565.1| - 8.3e-08 32.3 0.2 1.4e-07 31.5 0.1 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.21 gi|284164286|ref|YP_003402565.1| - 2.1e-06 27.4 0.0 3.5e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 GATase_3 PF07685.9 gi|284164287|ref|YP_003402566.1| - 1.8e-31 108.8 0.4 2.5e-31 108.3 0.3 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|284164287|ref|YP_003402566.1| - 3.5e-20 72.2 0.0 1e-19 70.7 0.0 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|284164287|ref|YP_003402566.1| - 4.2e-10 39.5 0.1 8.7e-06 25.4 0.0 2.2 1 1 1 2 2 2 2 AAA domain CTP_synth_N PF06418.9 gi|284164287|ref|YP_003402566.1| - 0.00073 18.7 0.1 0.0011 18.1 0.0 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus SNO PF01174.14 gi|284164287|ref|YP_003402566.1| - 0.038 13.6 0.0 0.067 12.8 0.0 1.3 1 0 0 1 1 1 0 SNO glutamine amidotransferase family DUF1802 PF08819.6 gi|284164288|ref|YP_003402567.1| - 4.3e-31 107.8 0.0 4.9e-31 107.6 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1802) Frankia_peptide PF14407.1 gi|284164288|ref|YP_003402567.1| - 0.037 13.7 0.0 0.087 12.5 0.0 1.6 1 0 0 1 1 1 0 Ribosomally synthesized peptide prototyped by Frankia Franean1_4349. Plasmid_killer PF05015.8 gi|284164289|ref|YP_003402568.1| - 0.0045 17.1 0.1 0.0048 17.0 0.0 1.1 1 0 0 1 1 1 1 Plasmid maintenance system killer protein DUF3209 PF11483.3 gi|284164289|ref|YP_003402568.1| - 0.062 13.6 0.9 0.064 13.5 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3209) Methyltransf_11 PF08241.7 gi|284164290|ref|YP_003402569.1| - 5.1e-24 84.5 0.0 7.9e-24 83.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|284164290|ref|YP_003402569.1| - 7.7e-22 77.5 0.0 1e-21 77.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|284164290|ref|YP_003402569.1| - 4.9e-20 71.8 0.0 6.6e-20 71.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|284164290|ref|YP_003402569.1| - 1.8e-18 67.1 0.0 3.4e-18 66.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|284164290|ref|YP_003402569.1| - 1.8e-17 63.2 0.0 1.6e-16 60.1 0.0 1.9 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|284164290|ref|YP_003402569.1| - 2.8e-15 56.5 0.0 4.8e-15 55.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|284164290|ref|YP_003402569.1| - 7.9e-14 51.6 0.3 3e-13 49.8 0.2 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|284164290|ref|YP_003402569.1| - 3.4e-12 46.6 0.0 5e-12 46.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|284164290|ref|YP_003402569.1| - 9e-08 31.6 0.0 1.5e-07 30.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.9 gi|284164290|ref|YP_003402569.1| - 1.9e-05 23.8 0.0 2.8e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB NodS PF05401.6 gi|284164290|ref|YP_003402569.1| - 0.00021 20.7 0.0 0.00028 20.3 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) PCMT PF01135.14 gi|284164290|ref|YP_003402569.1| - 0.00024 20.7 0.0 0.00036 20.1 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_32 PF13679.1 gi|284164290|ref|YP_003402569.1| - 0.00026 20.7 0.0 0.001 18.7 0.0 1.7 1 1 1 2 2 2 1 Methyltransferase domain PrmA PF06325.8 gi|284164290|ref|YP_003402569.1| - 0.00073 18.7 0.0 0.001 18.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) DREV PF05219.7 gi|284164290|ref|YP_003402569.1| - 0.00087 18.2 0.0 0.0011 17.9 0.0 1.1 1 0 0 1 1 1 1 DREV methyltransferase TPMT PF05724.6 gi|284164290|ref|YP_003402569.1| - 0.0011 18.5 0.0 0.0017 17.8 0.0 1.4 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) MetW PF07021.7 gi|284164290|ref|YP_003402569.1| - 0.0032 16.8 0.0 0.0042 16.4 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW GidB PF02527.10 gi|284164290|ref|YP_003402569.1| - 0.0041 16.2 0.0 0.018 14.1 0.0 1.9 1 1 0 1 1 1 1 rRNA small subunit methyltransferase G RrnaAD PF00398.15 gi|284164290|ref|YP_003402569.1| - 0.0061 15.6 0.0 0.0081 15.2 0.0 1.4 1 1 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_PK PF05891.7 gi|284164290|ref|YP_003402569.1| - 0.0064 15.8 0.0 0.012 14.8 0.0 1.5 1 1 0 1 1 1 1 AdoMet dependent proline di-methyltransferase AdoMet_MTase PF07757.8 gi|284164290|ref|YP_003402569.1| - 0.0076 16.3 0.0 0.013 15.6 0.0 1.3 1 0 0 1 1 1 1 Predicted AdoMet-dependent methyltransferase CMAS PF02353.15 gi|284164290|ref|YP_003402569.1| - 0.0083 15.2 0.0 0.012 14.7 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase FmrO PF07091.6 gi|284164290|ref|YP_003402569.1| - 0.016 14.1 0.0 0.019 13.9 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) Methyltransf_9 PF08003.6 gi|284164290|ref|YP_003402569.1| - 0.036 12.7 0.0 0.045 12.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Methyltransf_29 PF03141.11 gi|284164290|ref|YP_003402569.1| - 0.14 10.4 0.0 0.87 7.8 0.0 1.9 2 0 0 2 2 2 0 Putative S-adenosyl-L-methionine-dependent methyltransferase UPF0020 PF01170.13 gi|284164290|ref|YP_003402569.1| - 0.15 11.6 0.0 0.22 11.0 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 TP_methylase PF00590.15 gi|284164291|ref|YP_003402570.1| - 2.3e-34 118.9 0.6 2.8e-34 118.6 0.4 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiC PF02570.10 gi|284164292|ref|YP_003402571.1| - 7.5e-49 165.8 1.4 9.1e-49 165.5 0.9 1.1 1 0 0 1 1 1 1 Precorrin-8X methylmutase CobN-Mg_chel PF02514.11 gi|284164293|ref|YP_003402572.1| - 0 1231.5 0.1 0 1231.2 0.0 1.1 1 0 0 1 1 1 1 CobN/Magnesium Chelatase LexA_DNA_bind PF01726.11 gi|284164293|ref|YP_003402572.1| - 0.0044 16.5 0.0 0.014 14.9 0.0 1.8 1 0 0 1 1 1 1 LexA DNA binding domain VWA_2 PF13519.1 gi|284164294|ref|YP_003402573.1| - 9e-20 71.4 1.3 9e-20 71.4 0.9 1.8 2 0 0 2 2 2 1 von Willebrand factor type A domain Mg_chelatase PF01078.16 gi|284164294|ref|YP_003402573.1| - 5e-12 45.4 0.1 5.8e-09 35.4 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI VWA PF00092.23 gi|284164294|ref|YP_003402573.1| - 8.9e-12 45.0 0.0 1.5e-11 44.3 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain AAA_5 PF07728.9 gi|284164294|ref|YP_003402573.1| - 2.2e-07 30.6 0.0 0.00052 19.7 0.0 2.6 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|284164294|ref|YP_003402573.1| - 0.00022 20.1 0.0 0.0018 17.1 0.0 2.2 2 0 0 2 2 2 1 MCM2/3/5 family VWA_3 PF13768.1 gi|284164294|ref|YP_003402573.1| - 0.0015 18.2 0.3 0.0028 17.3 0.2 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain AAA_16 PF13191.1 gi|284164294|ref|YP_003402573.1| - 0.0024 17.8 1.2 0.032 14.2 0.0 2.9 2 2 1 3 3 3 1 AAA ATPase domain Sigma54_activat PF00158.21 gi|284164294|ref|YP_003402573.1| - 0.0025 17.2 0.0 0.051 13.0 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain Mg_chelatase_2 PF13335.1 gi|284164294|ref|YP_003402573.1| - 0.03 14.7 0.6 0.03 14.7 0.4 2.2 2 1 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_22 PF13401.1 gi|284164294|ref|YP_003402573.1| - 0.032 14.3 0.0 3 8.0 0.0 3.4 3 1 0 3 3 3 0 AAA domain Xan_ur_permease PF00860.15 gi|284164295|ref|YP_003402574.1| - 5.8e-76 255.4 39.2 1.2e-75 254.4 27.2 1.4 1 1 0 1 1 1 1 Permease family Abhydrolase_6 PF12697.2 gi|284164296|ref|YP_003402575.1| - 1e-37 130.2 0.3 1.2e-37 130.0 0.2 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|284164296|ref|YP_003402575.1| - 4.2e-17 62.4 0.0 1.9e-15 57.0 0.0 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|284164296|ref|YP_003402575.1| - 8.4e-17 61.2 0.0 4.8e-16 58.8 0.0 1.9 1 1 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.3 gi|284164296|ref|YP_003402575.1| - 1.2e-05 25.0 0.1 2.2e-05 24.1 0.1 1.4 1 0 0 1 1 1 1 Putative lysophospholipase Ndr PF03096.9 gi|284164296|ref|YP_003402575.1| - 0.00031 19.3 0.0 0.007 14.8 0.0 2.0 2 0 0 2 2 2 1 Ndr family Abhydrolase_4 PF08386.5 gi|284164296|ref|YP_003402575.1| - 0.053 13.4 0.0 0.12 12.2 0.0 1.6 2 0 0 2 2 2 0 TAP-like protein PQQ_2 PF13360.1 gi|284164297|ref|YP_003402576.1| - 1.3e-35 122.9 16.0 1.6e-13 50.6 0.4 3.5 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.1 gi|284164297|ref|YP_003402576.1| - 9.7e-30 101.9 44.4 6.6e-07 29.3 0.2 8.6 8 0 0 8 8 8 8 PQQ-like domain PQQ PF01011.16 gi|284164297|ref|YP_003402576.1| - 8.3e-24 81.8 20.4 0.007 15.8 0.0 8.9 7 1 2 9 9 9 7 PQQ enzyme repeat RmuC PF02646.11 gi|284164299|ref|YP_003402578.1| - 0.0011 17.8 1.0 0.0013 17.6 0.7 1.1 1 0 0 1 1 1 1 RmuC family Arfaptin PF06456.8 gi|284164299|ref|YP_003402578.1| - 0.0026 17.1 0.5 0.003 16.9 0.4 1.2 1 0 0 1 1 1 1 Arfaptin-like domain DUF2730 PF10805.3 gi|284164299|ref|YP_003402578.1| - 0.0031 17.2 0.7 0.0049 16.5 0.5 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2730) Clp_N PF02861.15 gi|284164299|ref|YP_003402578.1| - 0.0032 17.3 1.8 0.006 16.4 1.2 1.4 1 0 0 1 1 1 1 Clp amino terminal domain AAA_13 PF13166.1 gi|284164299|ref|YP_003402578.1| - 0.0047 15.4 1.9 0.0047 15.4 1.3 1.3 1 1 0 1 1 1 1 AAA domain Matrilin_ccoil PF10393.4 gi|284164299|ref|YP_003402578.1| - 0.0085 15.4 0.2 0.017 14.4 0.2 1.5 1 0 0 1 1 1 1 Trimeric coiled-coil oligomerisation domain of matrilin NPV_P10 PF05531.7 gi|284164299|ref|YP_003402578.1| - 0.051 13.8 1.4 0.07 13.3 1.0 1.4 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein DUF1664 PF07889.7 gi|284164299|ref|YP_003402578.1| - 0.069 12.9 1.2 0.1 12.4 0.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) KLRAQ PF10205.4 gi|284164299|ref|YP_003402578.1| - 0.095 12.7 0.4 0.095 12.7 0.3 1.6 2 0 0 2 2 2 0 Predicted coiled-coil domain-containing protein Gly_acyl_tr_C PF08444.5 gi|284164299|ref|YP_003402578.1| - 0.11 12.5 0.1 0.15 12.1 0.1 1.1 1 0 0 1 1 1 0 Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region Atg14 PF10186.4 gi|284164299|ref|YP_003402578.1| - 0.13 11.2 1.8 0.14 11.1 1.2 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Tropomyosin PF00261.15 gi|284164299|ref|YP_003402578.1| - 0.14 11.2 13.6 0.25 10.3 9.4 1.4 1 1 0 1 1 1 0 Tropomyosin Tropomyosin_1 PF12718.2 gi|284164299|ref|YP_003402578.1| - 0.15 11.9 14.7 0.53 10.1 10.2 1.8 1 1 0 1 1 1 0 Tropomyosin like DUF972 PF06156.8 gi|284164299|ref|YP_003402578.1| - 0.15 12.4 5.3 0.25 11.7 3.7 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF972) Tho2 PF11262.3 gi|284164299|ref|YP_003402578.1| - 0.15 11.0 0.7 0.17 10.8 0.5 1.1 1 0 0 1 1 1 0 Transcription factor/nuclear export subunit protein 2 PspB PF06667.7 gi|284164299|ref|YP_003402578.1| - 0.15 11.9 0.6 0.35 10.8 0.4 1.7 1 1 0 1 1 1 0 Phage shock protein B bZIP_2 PF07716.10 gi|284164299|ref|YP_003402578.1| - 0.16 11.8 5.1 0.091 12.5 1.5 1.9 2 0 0 2 2 2 0 Basic region leucine zipper Striatin PF08232.7 gi|284164299|ref|YP_003402578.1| - 0.17 12.2 4.4 0.2 11.9 3.1 1.1 1 0 0 1 1 1 0 Striatin family SPT16 PF08644.6 gi|284164299|ref|YP_003402578.1| - 0.22 11.3 0.9 0.32 10.8 0.6 1.3 1 0 0 1 1 1 0 FACT complex subunit (SPT16/CDC68) SlyX PF04102.7 gi|284164299|ref|YP_003402578.1| - 0.26 11.6 10.0 0.2 12.0 4.3 2.3 1 1 1 2 2 2 0 SlyX DASH_Spc34 PF08657.5 gi|284164299|ref|YP_003402578.1| - 0.31 10.6 6.2 0.38 10.3 4.3 1.2 1 0 0 1 1 1 0 DASH complex subunit Spc34 DUF3373 PF11853.3 gi|284164299|ref|YP_003402578.1| - 0.33 9.4 1.9 0.3 9.5 1.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3373) Mnd1 PF03962.10 gi|284164299|ref|YP_003402578.1| - 0.33 10.5 6.1 0.4 10.3 4.2 1.1 1 0 0 1 1 1 0 Mnd1 family Herpes_UL6 PF01763.11 gi|284164299|ref|YP_003402578.1| - 0.36 8.9 2.6 0.39 8.8 1.8 1.0 1 0 0 1 1 1 0 Herpesvirus UL6 like Nha1_C PF08619.5 gi|284164299|ref|YP_003402578.1| - 0.57 9.3 7.8 0.61 9.2 5.4 1.0 1 0 0 1 1 1 0 Alkali metal cation/H+ antiporter Nha1 C terminus IncA PF04156.9 gi|284164299|ref|YP_003402578.1| - 0.8 9.2 7.6 1.1 8.7 5.3 1.3 1 1 0 1 1 1 0 IncA protein DUF3552 PF12072.3 gi|284164299|ref|YP_003402578.1| - 1.1 8.4 14.5 1.2 8.2 10.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) DivIVA PF05103.8 gi|284164299|ref|YP_003402578.1| - 1.2 9.1 9.6 2.2 8.3 6.6 1.4 1 1 0 1 1 1 0 DivIVA protein Fmp27_WPPW PF10359.4 gi|284164299|ref|YP_003402578.1| - 1.6 7.0 6.5 1.9 6.8 4.5 1.0 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Prefoldin_2 PF01920.15 gi|284164299|ref|YP_003402578.1| - 2.4 7.9 8.1 0.2 11.4 1.6 1.9 2 0 0 2 2 2 0 Prefoldin subunit Spc24 PF08286.6 gi|284164299|ref|YP_003402578.1| - 3.6 7.3 10.0 20 4.8 7.0 2.0 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 DivIC PF04977.10 gi|284164299|ref|YP_003402578.1| - 4.9 6.6 8.7 0.24 10.8 1.6 2.0 2 1 0 2 2 2 0 Septum formation initiator FUSC PF04632.7 gi|284164299|ref|YP_003402578.1| - 8.1 4.7 6.9 8.4 4.6 4.8 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family GvpG PF05120.7 gi|284164299|ref|YP_003402578.1| - 9.8 6.0 10.1 0.94 9.3 1.1 2.4 1 1 1 2 2 2 0 Gas vesicle protein G PALP PF00291.20 gi|284164300|ref|YP_003402579.1| - 1.2e-55 188.9 1.7 1.3e-55 188.7 1.2 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme CoA_binding_2 PF13380.1 gi|284164301|ref|YP_003402580.1| - 3.5e-36 123.8 0.1 4.2e-36 123.6 0.0 1.1 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.14 gi|284164301|ref|YP_003402580.1| - 1.5e-07 31.8 0.0 2.2e-07 31.3 0.0 1.2 1 0 0 1 1 1 1 CoA binding domain GFO_IDH_MocA PF01408.17 gi|284164301|ref|YP_003402580.1| - 0.11 13.0 0.1 0.73 10.3 0.0 2.0 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold KaiC PF06745.8 gi|284164302|ref|YP_003402581.1| - 0.00014 21.0 0.0 0.00025 20.2 0.0 1.4 1 1 0 1 1 1 1 KaiC DUF835 PF05763.7 gi|284164302|ref|YP_003402581.1| - 0.013 15.0 0.0 0.022 14.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF835) DUF1477 PF07346.6 gi|284164302|ref|YP_003402581.1| - 0.022 14.7 0.1 0.049 13.6 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1477) PAXNEB PF05625.6 gi|284164302|ref|YP_003402581.1| - 0.049 12.4 0.0 0.051 12.4 0.0 1.1 1 0 0 1 1 1 0 PAXNEB protein UbiA PF01040.13 gi|284164303|ref|YP_003402582.1| - 1.1e-44 152.5 19.8 1.4e-44 152.2 13.7 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family FAD_binding_3 PF01494.14 gi|284164305|ref|YP_003402584.1| - 3.8e-06 26.1 0.0 0.023 13.7 0.0 2.1 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.19 gi|284164305|ref|YP_003402584.1| - 0.00073 18.5 0.1 0.014 14.2 0.1 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase SE PF08491.5 gi|284164305|ref|YP_003402584.1| - 0.0011 17.9 0.0 0.0015 17.4 0.0 1.2 1 0 0 1 1 1 1 Squalene epoxidase FAD_binding_2 PF00890.19 gi|284164305|ref|YP_003402584.1| - 0.0016 17.3 0.3 0.42 9.3 0.1 2.2 1 1 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.2 gi|284164305|ref|YP_003402584.1| - 0.0017 17.5 0.6 0.045 12.8 0.0 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|284164305|ref|YP_003402584.1| - 0.0037 17.1 0.0 0.034 14.0 0.0 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GMC_oxred_N PF00732.14 gi|284164305|ref|YP_003402584.1| - 0.014 14.6 0.0 1.5 7.9 0.0 2.1 2 0 0 2 2 2 0 GMC oxidoreductase NAD_binding_8 PF13450.1 gi|284164305|ref|YP_003402584.1| - 0.014 15.4 0.2 0.046 13.7 0.1 1.9 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|284164305|ref|YP_003402584.1| - 0.12 11.5 0.1 1.1 8.3 0.0 2.1 2 0 0 2 2 2 0 Thi4 family MarR_2 PF12802.2 gi|284164306|ref|YP_003402585.1| - 9.4e-06 25.2 0.2 0.00017 21.2 0.0 2.4 2 0 0 2 2 2 1 MarR family HTH_45 PF14947.1 gi|284164306|ref|YP_003402585.1| - 0.00021 21.0 0.0 0.00036 20.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix MarR PF01047.17 gi|284164306|ref|YP_003402585.1| - 0.00028 20.5 0.1 0.0011 18.5 0.0 2.0 2 1 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|284164306|ref|YP_003402585.1| - 0.0003 20.5 0.3 0.011 15.4 0.0 2.7 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_36 PF13730.1 gi|284164306|ref|YP_003402585.1| - 0.00038 20.5 0.0 0.0009 19.3 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_7 PF02796.10 gi|284164306|ref|YP_003402585.1| - 0.00076 19.2 0.1 0.0018 18.1 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_IclR PF09339.5 gi|284164306|ref|YP_003402585.1| - 0.0009 18.7 0.1 0.0021 17.6 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_29 PF13551.1 gi|284164306|ref|YP_003402585.1| - 0.0011 19.0 0.3 0.023 14.8 0.1 2.3 2 0 0 2 2 2 1 Winged helix-turn helix HTH_11 PF08279.7 gi|284164306|ref|YP_003402585.1| - 0.0018 17.8 0.3 0.0063 16.1 0.1 2.0 2 0 0 2 2 2 1 HTH domain TrmB PF01978.14 gi|284164306|ref|YP_003402585.1| - 0.0033 17.1 0.0 0.0062 16.2 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|284164306|ref|YP_003402585.1| - 0.013 15.2 0.0 0.029 14.1 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_27 PF13463.1 gi|284164306|ref|YP_003402585.1| - 0.016 15.5 0.1 0.043 14.1 0.0 1.8 1 0 0 1 1 1 0 Winged helix DNA-binding domain Trp_repressor PF01371.14 gi|284164306|ref|YP_003402585.1| - 0.025 14.4 0.2 0.053 13.4 0.1 1.5 1 0 0 1 1 1 0 Trp repressor protein HTH_23 PF13384.1 gi|284164306|ref|YP_003402585.1| - 0.056 13.1 0.6 0.19 11.4 0.1 2.0 2 0 0 2 2 2 0 Homeodomain-like domain Penicillinase_R PF03965.11 gi|284164306|ref|YP_003402585.1| - 0.07 13.2 0.0 0.47 10.5 0.0 2.1 2 0 0 2 2 2 0 Penicillinase repressor GntR PF00392.16 gi|284164306|ref|YP_003402585.1| - 0.074 12.5 0.0 0.15 11.5 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_5 PF01022.15 gi|284164306|ref|YP_003402585.1| - 0.086 12.5 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_DeoR PF08220.7 gi|284164306|ref|YP_003402585.1| - 0.087 12.3 0.1 0.24 10.9 0.1 1.7 2 0 0 2 2 1 0 DeoR-like helix-turn-helix domain DUF2984 PF11203.3 gi|284164306|ref|YP_003402585.1| - 0.092 12.8 0.3 0.58 10.2 0.0 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF2984) Med26 PF08711.6 gi|284164306|ref|YP_003402585.1| - 0.1 12.1 0.0 0.23 10.9 0.0 1.6 1 0 0 1 1 1 0 TFIIS helical bundle-like domain Rrf2 PF02082.15 gi|284164306|ref|YP_003402585.1| - 0.11 12.5 0.0 0.21 11.7 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_28 PF13518.1 gi|284164306|ref|YP_003402585.1| - 0.22 11.5 1.0 0.49 10.4 0.1 1.9 3 0 0 3 3 1 0 Helix-turn-helix domain MEDS PF14417.1 gi|284164307|ref|YP_003402586.1| - 1.6e-33 115.3 0.3 4.7e-33 113.8 0.0 1.8 2 0 0 2 2 2 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain HATPase_c PF02518.21 gi|284164307|ref|YP_003402586.1| - 2.6e-28 97.9 0.0 8.3e-28 96.3 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.1 gi|284164307|ref|YP_003402586.1| - 1.1e-18 68.1 0.1 1.7e-16 61.0 0.0 2.7 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.1 gi|284164307|ref|YP_003402586.1| - 1.5e-14 54.1 0.0 1.7e-10 41.0 0.0 2.6 2 0 0 2 2 2 2 GAF domain GAF PF01590.21 gi|284164307|ref|YP_003402586.1| - 3.1e-12 46.8 0.0 4.5e-11 43.0 0.0 2.5 2 0 0 2 2 2 1 GAF domain PAS_3 PF08447.6 gi|284164307|ref|YP_003402586.1| - 3.1e-11 43.2 1.8 5e-11 42.5 0.1 2.3 3 0 0 3 3 2 1 PAS fold HisKA PF00512.20 gi|284164307|ref|YP_003402586.1| - 7.9e-11 41.7 0.2 7.9e-11 41.7 0.1 3.5 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|284164307|ref|YP_003402586.1| - 2.2e-10 40.5 0.1 5e-09 36.1 0.0 3.0 2 0 0 2 2 2 1 PAS fold HATPase_c_5 PF14501.1 gi|284164307|ref|YP_003402586.1| - 9.6e-08 31.6 0.0 2.5e-07 30.3 0.0 1.7 1 0 0 1 1 1 1 GHKL domain PAS_9 PF13426.1 gi|284164307|ref|YP_003402586.1| - 3.8e-06 27.1 0.1 5.5e-05 23.4 0.0 2.9 2 0 0 2 2 2 1 PAS domain KaiC PF06745.8 gi|284164307|ref|YP_003402586.1| - 0.00063 18.9 0.0 0.0018 17.4 0.0 1.8 1 0 0 1 1 1 1 KaiC HATPase_c_3 PF13589.1 gi|284164307|ref|YP_003402586.1| - 0.0016 18.1 0.0 0.004 16.7 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Acetyltransf_10 PF13673.1 gi|284164307|ref|YP_003402586.1| - 0.066 13.3 0.4 0.6 10.2 0.0 2.7 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain BBE PF08031.7 gi|284164308|ref|YP_003402587.1| - 4.7e-05 23.2 0.1 6.4e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 Berberine and berberine like MarR_2 PF12802.2 gi|284164309|ref|YP_003402588.1| - 1.4e-05 24.7 0.1 2.8e-05 23.6 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|284164309|ref|YP_003402588.1| - 0.00059 19.3 0.2 0.0012 18.4 0.1 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|284164309|ref|YP_003402588.1| - 0.0018 18.0 0.1 0.0041 16.8 0.1 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_27 PF13463.1 gi|284164309|ref|YP_003402588.1| - 0.0023 18.2 0.1 0.0049 17.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|284164309|ref|YP_003402588.1| - 0.0025 17.5 0.5 0.0057 16.3 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|284164309|ref|YP_003402588.1| - 0.0088 15.4 0.1 0.024 13.9 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|284164309|ref|YP_003402588.1| - 0.031 13.9 0.0 0.048 13.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_23 PF13384.1 gi|284164309|ref|YP_003402588.1| - 0.035 13.7 0.3 0.073 12.7 0.2 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_36 PF13730.1 gi|284164309|ref|YP_003402588.1| - 0.11 12.6 0.0 0.19 11.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Lactamase_B PF00753.22 gi|284164310|ref|YP_003402589.1| - 6.4e-30 104.2 0.5 7.9e-30 103.9 0.4 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|284164310|ref|YP_003402589.1| - 0.00013 21.6 0.0 0.00019 21.0 0.0 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain FAD_binding_4 PF01565.18 gi|284164311|ref|YP_003402590.1| - 4.1e-34 117.0 2.0 7.6e-34 116.1 1.4 1.5 1 0 0 1 1 1 1 FAD binding domain BBE PF08031.7 gi|284164311|ref|YP_003402590.1| - 5.2e-13 48.6 0.1 1.3e-12 47.3 0.0 1.8 1 0 0 1 1 1 1 Berberine and berberine like OsmC PF02566.14 gi|284164312|ref|YP_003402591.1| - 4.5e-19 68.4 0.2 1.6e-18 66.6 0.0 1.9 2 1 0 2 2 2 1 OsmC-like protein Methyltransf_31 PF13847.1 gi|284164313|ref|YP_003402592.1| - 1.5e-29 102.5 0.0 2e-29 102.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|284164313|ref|YP_003402592.1| - 1.6e-21 76.5 0.1 2.7e-21 75.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|284164313|ref|YP_003402592.1| - 9.5e-15 54.3 0.0 1.8e-14 53.4 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|284164313|ref|YP_003402592.1| - 3.1e-12 46.7 0.0 5.8e-12 45.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|284164313|ref|YP_003402592.1| - 1.2e-11 45.2 0.2 1.8e-11 44.6 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|284164313|ref|YP_003402592.1| - 1.2e-10 41.7 0.1 1.9e-10 41.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|284164313|ref|YP_003402592.1| - 2e-10 40.6 0.0 2.6e-10 40.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|284164313|ref|YP_003402592.1| - 7.9e-10 38.8 0.1 1.5e-09 37.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|284164313|ref|YP_003402592.1| - 6.7e-07 28.7 0.0 9.9e-07 28.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.9 gi|284164313|ref|YP_003402592.1| - 4.2e-06 26.2 0.0 7.1e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.15 gi|284164313|ref|YP_003402592.1| - 4.4e-06 25.9 0.0 8.3e-06 25.0 0.0 1.4 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase PCMT PF01135.14 gi|284164313|ref|YP_003402592.1| - 1.2e-05 24.9 0.0 1.8e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_9 PF08003.6 gi|284164313|ref|YP_003402592.1| - 0.00023 19.9 0.0 0.00028 19.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_32 PF13679.1 gi|284164313|ref|YP_003402592.1| - 0.0013 18.3 0.0 0.0023 17.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain GidB PF02527.10 gi|284164313|ref|YP_003402592.1| - 0.007 15.5 0.0 0.011 14.9 0.0 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_29 PF03141.11 gi|284164313|ref|YP_003402592.1| - 0.022 13.1 0.0 0.027 12.8 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase UPF0020 PF01170.13 gi|284164313|ref|YP_003402592.1| - 0.024 14.2 0.0 0.045 13.3 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 FtsJ PF01728.14 gi|284164313|ref|YP_003402592.1| - 0.027 14.4 0.0 0.035 14.1 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_8 PF05148.10 gi|284164313|ref|YP_003402592.1| - 0.034 13.7 0.0 0.054 13.1 0.0 1.5 1 0 0 1 1 1 0 Hypothetical methyltransferase Methyltransf_24 PF13578.1 gi|284164313|ref|YP_003402592.1| - 0.12 13.1 0.1 0.21 12.4 0.1 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.7 gi|284164314|ref|YP_003402593.1| - 1e-23 83.5 0.0 1.7e-23 82.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|284164314|ref|YP_003402593.1| - 2.9e-17 62.6 0.0 3.5e-17 62.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|284164314|ref|YP_003402593.1| - 4.6e-17 61.9 0.0 7e-17 61.3 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|284164314|ref|YP_003402593.1| - 6.2e-16 58.6 0.0 9.9e-16 57.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|284164314|ref|YP_003402593.1| - 1.1e-14 54.9 0.0 1.8e-14 54.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|284164314|ref|YP_003402593.1| - 1.4e-13 50.8 0.0 1.8e-13 50.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|284164314|ref|YP_003402593.1| - 2.3e-13 50.1 0.2 4.6e-13 49.2 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|284164314|ref|YP_003402593.1| - 2e-10 41.0 0.0 3.4e-10 40.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|284164314|ref|YP_003402593.1| - 1.6e-07 31.0 0.0 2.4e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.9 gi|284164314|ref|YP_003402593.1| - 5e-06 26.0 0.0 8.1e-06 25.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.14 gi|284164314|ref|YP_003402593.1| - 6.9e-06 25.7 0.0 1e-05 25.2 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.7 gi|284164314|ref|YP_003402593.1| - 4.5e-05 22.8 0.0 8.1e-05 22.0 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.15 gi|284164314|ref|YP_003402593.1| - 0.0018 17.4 0.0 0.0027 16.8 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PrmA PF06325.8 gi|284164314|ref|YP_003402593.1| - 0.02 13.9 0.0 0.029 13.5 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) TehB PF03848.9 gi|284164314|ref|YP_003402593.1| - 0.03 13.4 0.0 0.042 13.0 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_32 PF13679.1 gi|284164314|ref|YP_003402593.1| - 0.031 13.9 0.0 0.049 13.3 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_2 PF00891.13 gi|284164314|ref|YP_003402593.1| - 0.038 13.1 0.0 0.055 12.6 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase HTH_IclR PF09339.5 gi|284164315|ref|YP_003402594.1| - 0.011 15.3 0.0 0.025 14.1 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_45 PF14947.1 gi|284164315|ref|YP_003402594.1| - 0.027 14.2 0.0 0.066 13.0 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix TrmB PF01978.14 gi|284164315|ref|YP_003402594.1| - 0.037 13.7 0.0 0.07 12.8 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB FAD_binding_4 PF01565.18 gi|284164316|ref|YP_003402595.1| - 3.7e-34 117.1 4.7 4.3e-34 116.9 2.4 1.7 2 0 0 2 2 2 1 FAD binding domain BBE PF08031.7 gi|284164316|ref|YP_003402595.1| - 5.1e-09 35.8 0.0 1.1e-08 34.8 0.0 1.6 1 0 0 1 1 1 1 Berberine and berberine like Cytokin-bind PF09265.5 gi|284164316|ref|YP_003402595.1| - 0.043 12.9 0.0 0.062 12.4 0.0 1.3 1 0 0 1 1 1 0 Cytokinin dehydrogenase 1, FAD and cytokinin binding PMT_2 PF13231.1 gi|284164317|ref|YP_003402596.1| - 0.017 15.0 1.1 0.02 14.7 0.8 1.0 1 0 0 1 1 1 0 Dolichyl-phosphate-mannose-protein mannosyltransferase TraQ PF09679.5 gi|284164317|ref|YP_003402596.1| - 0.054 13.4 0.4 0.064 13.1 0.3 1.2 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin chaperone (TraQ) TauE PF01925.14 gi|284164318|ref|YP_003402597.1| - 3e-34 118.5 50.5 3e-34 118.5 35.0 1.4 2 0 0 2 2 2 1 Sulfite exporter TauE/SafE FAM70 PF14967.1 gi|284164318|ref|YP_003402597.1| - 0.49 9.5 2.6 0.99 8.5 1.8 1.5 1 0 0 1 1 1 0 FAM70 protein ABM PF03992.11 gi|284164319|ref|YP_003402598.1| - 0.0011 18.9 0.1 0.002 18.1 0.1 1.4 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase CHASE2 PF05226.6 gi|284164319|ref|YP_003402598.1| - 0.006 15.8 0.0 0.0062 15.8 0.0 1.1 1 0 0 1 1 1 1 CHASE2 domain Methyltransf_31 PF13847.1 gi|284164320|ref|YP_003402599.1| - 6e-18 64.8 0.0 7.9e-18 64.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|284164320|ref|YP_003402599.1| - 1.4e-17 64.3 0.1 2.8e-17 63.2 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|284164320|ref|YP_003402599.1| - 2.5e-12 47.1 0.1 5.3e-12 46.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|284164320|ref|YP_003402599.1| - 1.7e-11 44.0 0.0 2.7e-11 43.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|284164320|ref|YP_003402599.1| - 2.1e-10 40.9 0.1 3.5e-10 40.2 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|284164320|ref|YP_003402599.1| - 4.7e-09 36.5 0.2 8.6e-09 35.6 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|284164320|ref|YP_003402599.1| - 1.1e-08 35.1 0.4 2.4e-08 34.0 0.3 1.6 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|284164320|ref|YP_003402599.1| - 1.9e-08 33.8 0.0 3.1e-08 33.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_4 PF02390.12 gi|284164320|ref|YP_003402599.1| - 2.4e-06 26.7 0.0 3.4e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_3 PF01596.12 gi|284164320|ref|YP_003402599.1| - 1.7e-05 23.9 0.0 2.7e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase CMAS PF02353.15 gi|284164320|ref|YP_003402599.1| - 4.7e-05 22.6 0.0 6.6e-05 22.1 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_24 PF13578.1 gi|284164320|ref|YP_003402599.1| - 0.00016 22.4 1.0 0.00039 21.2 0.5 1.7 2 0 0 2 2 1 1 Methyltransferase domain FmrO PF07091.6 gi|284164320|ref|YP_003402599.1| - 0.00032 19.7 0.0 0.00048 19.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) PrmA PF06325.8 gi|284164320|ref|YP_003402599.1| - 0.00069 18.8 0.1 0.001 18.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Ubie_methyltran PF01209.13 gi|284164320|ref|YP_003402599.1| - 0.0016 17.5 0.0 0.0028 16.8 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PCMT PF01135.14 gi|284164320|ref|YP_003402599.1| - 0.002 17.6 0.0 0.0033 16.9 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GCD14 PF08704.5 gi|284164320|ref|YP_003402599.1| - 0.0029 17.1 0.1 0.0042 16.6 0.1 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_32 PF13679.1 gi|284164320|ref|YP_003402599.1| - 0.0044 16.7 0.0 0.0061 16.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|284164320|ref|YP_003402599.1| - 0.017 14.6 0.0 0.027 14.0 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_15 PF09445.5 gi|284164320|ref|YP_003402599.1| - 0.073 12.6 0.0 0.095 12.2 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase HTH_20 PF12840.2 gi|284164320|ref|YP_003402599.1| - 0.085 12.6 0.0 0.36 10.6 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain PT-VENN PF04829.8 gi|284164320|ref|YP_003402599.1| - 1.4 8.5 4.1 0.4 10.2 0.3 2.0 2 0 0 2 2 2 0 Pre-toxin domain with VENN motif MarR_2 PF12802.2 gi|284164321|ref|YP_003402600.1| - 0.00014 21.4 0.2 0.00038 20.0 0.1 1.7 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|284164321|ref|YP_003402600.1| - 0.00019 20.9 0.1 0.0019 17.7 0.0 2.3 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|284164321|ref|YP_003402600.1| - 0.014 15.1 0.0 0.025 14.2 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|284164321|ref|YP_003402600.1| - 0.039 13.7 0.0 0.063 13.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix Pro-kuma_activ PF09286.6 gi|284164321|ref|YP_003402600.1| - 0.067 13.2 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Pro-kumamolisin, activation domain HTH_24 PF13412.1 gi|284164321|ref|YP_003402600.1| - 0.078 12.3 0.0 0.15 11.4 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HemN_C PF06969.11 gi|284164321|ref|YP_003402600.1| - 0.099 12.7 0.2 0.28 11.2 0.1 1.8 1 0 0 1 1 1 0 HemN C-terminal domain MFS_1 PF07690.11 gi|284164322|ref|YP_003402601.1| - 1.8e-41 142.0 67.1 6.5e-37 127.0 29.6 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily Complex1_51K PF01512.12 gi|284164323|ref|YP_003402602.1| - 1.3e-18 67.1 0.0 2.3e-18 66.3 0.0 1.4 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit NADH_4Fe-4S PF10589.4 gi|284164323|ref|YP_003402602.1| - 1e-09 37.4 0.4 1e-09 37.4 0.3 2.1 2 0 0 2 2 2 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region FIST_C PF10442.4 gi|284164323|ref|YP_003402602.1| - 0.026 14.4 0.1 0.083 12.8 0.1 1.9 1 0 0 1 1 1 0 FIST C domain Glyco_tranf_2_4 PF13704.1 gi|284164323|ref|YP_003402602.1| - 0.037 14.3 0.0 0.099 12.9 0.0 1.7 1 0 0 1 1 1 0 Glycosyl transferase family 2 Molybdopterin PF00384.17 gi|284164324|ref|YP_003402603.1| - 1.7e-84 284.0 0.0 2.2e-84 283.6 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|284164324|ref|YP_003402603.1| - 2.5e-29 101.2 0.0 5.7e-29 100.1 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Fer2_4 PF13510.1 gi|284164324|ref|YP_003402603.1| - 1.3e-20 72.9 0.5 3e-20 71.7 0.3 1.7 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain NADH-G_4Fe-4S_3 PF10588.4 gi|284164324|ref|YP_003402603.1| - 3.6e-13 48.5 0.6 3.6e-13 48.5 0.4 2.5 3 0 0 3 3 2 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Molybdop_Fe4S4 PF04879.11 gi|284164324|ref|YP_003402603.1| - 9.4e-12 44.5 0.1 9.4e-12 44.5 0.1 2.3 2 0 0 2 2 1 1 Molybdopterin oxidoreductase Fe4S4 domain Fer4_6 PF12837.2 gi|284164324|ref|YP_003402603.1| - 1.7e-09 37.1 10.6 1.6e-06 27.6 0.8 3.5 4 0 0 4 4 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|284164324|ref|YP_003402603.1| - 7e-09 35.9 9.8 7e-09 35.9 6.8 3.9 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|284164324|ref|YP_003402603.1| - 2.6e-08 33.6 8.2 2.6e-08 33.6 5.7 3.3 4 0 0 4 4 4 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|284164324|ref|YP_003402603.1| - 5e-08 32.6 21.3 5e-07 29.4 8.5 3.8 3 2 1 4 4 4 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|284164324|ref|YP_003402603.1| - 5.2e-08 32.1 13.1 9.4e-07 28.1 1.1 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|284164324|ref|YP_003402603.1| - 1.9e-06 27.9 10.5 1.9e-06 27.9 7.3 3.9 2 1 2 4 4 4 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|284164324|ref|YP_003402603.1| - 2.2e-06 27.6 8.4 2.2e-06 27.6 5.8 3.4 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|284164324|ref|YP_003402603.1| - 0.00013 21.6 14.2 0.00084 19.1 2.0 4.9 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|284164324|ref|YP_003402603.1| - 0.00025 21.5 15.5 0.0081 16.7 0.5 4.1 4 0 0 4 4 2 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|284164324|ref|YP_003402603.1| - 0.00061 20.1 1.2 0.00061 20.1 0.8 3.7 2 2 1 3 3 3 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|284164324|ref|YP_003402603.1| - 0.0015 19.1 0.3 0.0015 19.1 0.2 4.3 5 0 0 5 5 3 2 4Fe-4S double cluster binding domain Fer4_13 PF13370.1 gi|284164324|ref|YP_003402603.1| - 0.013 15.8 12.4 0.57 10.6 2.0 3.0 2 0 0 2 2 2 0 4Fe-4S single cluster domain MaoC_dehydratas PF01575.14 gi|284164326|ref|YP_003402605.1| - 5.7e-21 74.1 0.1 9e-21 73.5 0.0 1.3 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|284164326|ref|YP_003402605.1| - 2.5e-06 27.2 0.2 8.9e-06 25.5 0.1 1.9 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT PF03061.17 gi|284164326|ref|YP_003402605.1| - 0.034 14.2 0.1 0.071 13.2 0.0 1.6 1 0 0 1 1 1 0 Thioesterase superfamily DUF2092 PF09865.4 gi|284164327|ref|YP_003402606.1| - 0.0031 16.6 0.0 0.007 15.4 0.0 1.5 1 1 0 1 1 1 1 Predicted periplasmic protein (DUF2092) MS_channel PF00924.13 gi|284164328|ref|YP_003402607.1| - 2e-50 170.9 0.0 2.8e-50 170.5 0.0 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel CRS1_YhbY PF01985.16 gi|284164329|ref|YP_003402608.1| - 7.5e-21 73.9 0.0 8.1e-21 73.8 0.0 1.0 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain Rpr2 PF04032.11 gi|284164330|ref|YP_003402609.1| - 6.1e-18 64.4 0.0 7.1e-18 64.2 0.0 1.0 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain ERp29 PF07749.7 gi|284164330|ref|YP_003402609.1| - 0.11 13.0 0.0 0.16 12.5 0.0 1.2 1 0 0 1 1 1 0 Endoplasmic reticulum protein ERp29, C-terminal domain zf-DNL PF05180.7 gi|284164330|ref|YP_003402609.1| - 0.17 11.5 0.5 0.32 10.7 0.3 1.4 1 0 0 1 1 1 0 DNL zinc finger SBP_bac_5 PF00496.17 gi|284164331|ref|YP_003402610.1| - 4.6e-47 160.6 0.1 1.8e-41 142.2 0.1 2.1 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle Dak1 PF02733.12 gi|284164331|ref|YP_003402610.1| - 0.27 9.7 0.0 0.4 9.1 0.0 1.1 1 0 0 1 1 1 0 Dak1 domain PAP2 PF01569.16 gi|284164332|ref|YP_003402611.1| - 2e-15 56.6 2.4 5.6e-15 55.1 1.7 1.8 1 0 0 1 1 1 1 PAP2 superfamily PAP2_3 PF14378.1 gi|284164332|ref|YP_003402611.1| - 1.4e-08 34.5 7.8 2.1e-08 33.8 5.4 1.3 1 0 0 1 1 1 1 PAP2 superfamily UPF0016 PF01169.14 gi|284164332|ref|YP_003402611.1| - 0.00013 22.0 0.4 0.00093 19.2 0.0 2.4 2 0 0 2 2 2 1 Uncharacterized protein family UPF0016 DUF4131 PF13567.1 gi|284164332|ref|YP_003402611.1| - 0.0003 20.2 6.4 0.28 10.5 0.1 3.0 2 1 1 3 3 3 2 Domain of unknown function (DUF4131) DUF2418 PF10332.4 gi|284164332|ref|YP_003402611.1| - 0.14 12.4 2.8 6.3 7.1 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2418) PAP2_C PF14360.1 gi|284164332|ref|YP_003402611.1| - 0.31 11.3 7.1 0.15 12.3 2.8 2.1 2 0 0 2 2 2 0 PAP2 superfamily C-terminal DUF3188 PF11384.3 gi|284164332|ref|YP_003402611.1| - 1.4 8.5 11.1 0.72 9.4 1.2 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3188) DUF4191 PF13829.1 gi|284164332|ref|YP_003402611.1| - 1.6 7.8 4.1 0.39 9.8 0.5 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4191) zinc_ribbon_5 PF13719.1 gi|284164334|ref|YP_003402613.1| - 0.00091 18.7 0.4 0.16 11.6 0.0 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|284164334|ref|YP_003402613.1| - 0.0019 17.8 0.9 0.27 10.9 0.0 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zf-RING_3 PF14369.1 gi|284164334|ref|YP_003402613.1| - 0.0026 17.7 2.6 0.0052 16.7 1.8 1.5 1 0 0 1 1 1 1 zinc-finger Zn_Tnp_IS91 PF14319.1 gi|284164334|ref|YP_003402613.1| - 0.013 15.0 0.3 0.016 14.6 0.2 1.2 1 0 0 1 1 1 0 Transposase zinc-binding domain Zn-ribbon_8 PF09723.5 gi|284164334|ref|YP_003402613.1| - 0.014 15.3 1.7 0.025 14.4 1.2 1.5 1 0 0 1 1 1 0 Zinc ribbon domain HypA PF01155.14 gi|284164334|ref|YP_003402613.1| - 0.015 15.0 1.0 0.023 14.3 0.7 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|284164334|ref|YP_003402613.1| - 0.016 14.4 2.1 0.86 8.8 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-LYAR PF08790.6 gi|284164334|ref|YP_003402613.1| - 0.016 14.8 0.3 0.027 14.1 0.2 1.3 1 0 0 1 1 1 0 LYAR-type C2HC zinc finger OrfB_Zn_ribbon PF07282.6 gi|284164334|ref|YP_003402613.1| - 0.032 13.8 1.0 0.047 13.3 0.7 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain TerY-C PF15616.1 gi|284164334|ref|YP_003402613.1| - 0.032 14.1 0.1 0.037 13.9 0.1 1.2 1 0 0 1 1 1 0 TerY-C metal binding domain DUF1451 PF07295.6 gi|284164334|ref|YP_003402613.1| - 0.033 13.9 1.2 0.049 13.4 0.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) DZR PF12773.2 gi|284164334|ref|YP_003402613.1| - 0.056 13.2 2.1 0.1 12.4 1.4 1.4 1 1 0 1 1 1 0 Double zinc ribbon zf-C3HC4_3 PF13920.1 gi|284164334|ref|YP_003402613.1| - 0.068 12.8 0.2 0.1 12.3 0.2 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DUF2318 PF10080.4 gi|284164334|ref|YP_003402613.1| - 0.11 12.3 0.1 0.19 11.5 0.1 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) zf-trcl PF13451.1 gi|284164334|ref|YP_003402613.1| - 0.19 11.4 0.6 0.19 11.4 0.4 2.1 1 1 1 2 2 2 0 Probable zinc-binding domain UPF0547 PF10571.4 gi|284164334|ref|YP_003402613.1| - 0.4 10.4 8.6 0.13 12.0 1.6 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 TF_Zn_Ribbon PF08271.7 gi|284164334|ref|YP_003402613.1| - 0.49 9.7 4.1 4.2 6.7 0.2 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding DUF2797 PF10977.3 gi|284164336|ref|YP_003402615.1| - 1.4e-49 168.8 3.6 2e-48 165.0 2.5 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF2797) PhoD PF09423.5 gi|284164337|ref|YP_003402616.1| - 6.2e-67 226.1 0.3 1.9e-55 188.2 0.0 2.1 2 0 0 2 2 2 2 PhoD-like phosphatase Laminin_B PF00052.13 gi|284164337|ref|YP_003402616.1| - 4.7e-13 48.9 0.0 7.2e-13 48.3 0.0 1.3 1 0 0 1 1 1 1 Laminin B (Domain IV) CarboxypepD_reg PF13620.1 gi|284164337|ref|YP_003402616.1| - 0.016 15.2 0.9 3.9 7.6 0.3 2.8 3 0 0 3 3 3 0 Carboxypeptidase regulatory-like domain fn3 PF00041.16 gi|284164337|ref|YP_003402616.1| - 0.13 12.3 0.9 1.9 8.6 0.1 2.3 2 0 0 2 2 2 0 Fibronectin type III domain BsuPI PF12690.2 gi|284164338|ref|YP_003402617.1| - 9.3e-23 79.7 0.0 1.2e-22 79.4 0.0 1.1 1 0 0 1 1 1 1 Intracellular proteinase inhibitor CARDB PF07705.6 gi|284164338|ref|YP_003402617.1| - 0.079 13.0 0.0 0.14 12.1 0.0 1.5 1 1 0 1 1 1 0 CARDB CbiX PF01903.12 gi|284164339|ref|YP_003402618.1| - 6e-42 142.0 0.4 1.4e-21 76.5 0.0 2.2 2 0 0 2 2 2 2 CbiX CbiK PF06180.6 gi|284164339|ref|YP_003402618.1| - 1.9e-07 30.4 0.2 0.0011 18.1 0.1 2.1 1 1 1 2 2 2 2 Cobalt chelatase (CbiK) Trm112p PF03966.11 gi|284164342|ref|YP_003402621.1| - 3.1e-11 43.4 1.0 4.4e-11 42.9 0.7 1.3 1 0 0 1 1 1 1 Trm112p-like protein TF_Zn_Ribbon PF08271.7 gi|284164342|ref|YP_003402621.1| - 0.069 12.4 0.6 0.18 11.1 0.4 1.7 1 0 0 1 1 1 0 TFIIB zinc-binding Adenylsucc_synt PF00709.16 gi|284164343|ref|YP_003402622.1| - 9.2e-143 475.8 0.0 1.1e-142 475.6 0.0 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase HTH_24 PF13412.1 gi|284164344|ref|YP_003402623.1| - 0.00044 19.5 0.0 0.00086 18.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_12 PF08461.5 gi|284164344|ref|YP_003402623.1| - 0.0049 16.5 0.1 0.0096 15.6 0.0 1.6 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain TrmB PF01978.14 gi|284164344|ref|YP_003402623.1| - 0.0091 15.6 0.4 0.017 14.7 0.1 1.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Phage_rep_org_N PF09681.5 gi|284164344|ref|YP_003402623.1| - 0.019 14.5 0.0 0.04 13.4 0.0 1.5 1 1 1 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) DUF2250 PF10007.4 gi|284164344|ref|YP_003402623.1| - 0.034 14.0 0.1 0.046 13.6 0.1 1.3 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_5 PF01022.15 gi|284164344|ref|YP_003402623.1| - 0.059 13.0 0.1 0.15 11.7 0.1 1.7 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|284164344|ref|YP_003402623.1| - 0.065 13.0 0.2 0.21 11.4 0.1 2.1 1 1 0 1 1 1 0 Helix-turn-helix domain MotA_activ PF09114.5 gi|284164344|ref|YP_003402623.1| - 0.073 12.8 0.0 0.084 12.6 0.0 1.2 1 0 0 1 1 1 0 Transcription factor MotA, activation domain DUF972 PF06156.8 gi|284164345|ref|YP_003402624.1| - 0.00011 22.4 3.2 0.001 19.3 2.5 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF972) TBPIP PF07106.8 gi|284164345|ref|YP_003402624.1| - 0.00011 21.7 1.9 0.00025 20.6 1.3 1.5 1 0 0 1 1 1 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Cortex-I_coil PF09304.5 gi|284164345|ref|YP_003402624.1| - 0.00022 21.2 8.6 0.00056 19.9 5.9 1.6 1 0 0 1 1 1 1 Cortexillin I, coiled coil Fmp27_WPPW PF10359.4 gi|284164345|ref|YP_003402624.1| - 0.00065 18.2 4.7 0.00065 18.2 3.2 1.8 2 0 0 2 2 2 1 RNA pol II promoter Fmp27 protein domain IncA PF04156.9 gi|284164345|ref|YP_003402624.1| - 0.0013 18.4 12.3 0.0024 17.5 8.5 1.4 1 0 0 1 1 1 1 IncA protein THOC7 PF05615.8 gi|284164345|ref|YP_003402624.1| - 0.002 18.3 4.7 0.0046 17.2 3.2 1.6 1 0 0 1 1 1 1 Tho complex subunit 7 HALZ PF02183.13 gi|284164345|ref|YP_003402624.1| - 0.0062 16.2 1.3 0.0062 16.2 0.9 1.9 1 1 1 2 2 2 1 Homeobox associated leucine zipper TMF_DNA_bd PF12329.3 gi|284164345|ref|YP_003402624.1| - 0.0087 15.8 9.9 0.026 14.3 6.9 1.8 1 0 0 1 1 1 1 TATA element modulatory factor 1 DNA binding ADIP PF11559.3 gi|284164345|ref|YP_003402624.1| - 0.0094 15.8 5.9 0.0094 15.8 4.1 2.3 2 0 0 2 2 2 1 Afadin- and alpha -actinin-Binding CENP-F_leu_zip PF10473.4 gi|284164345|ref|YP_003402624.1| - 0.0096 15.7 10.2 0.025 14.4 7.1 1.6 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF904 PF06005.7 gi|284164345|ref|YP_003402624.1| - 0.01 16.0 10.1 0.013 15.7 5.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF904) bZIP_1 PF00170.16 gi|284164345|ref|YP_003402624.1| - 0.011 15.6 3.0 0.011 15.6 2.1 3.2 2 1 1 3 3 3 0 bZIP transcription factor Allexi_40kDa PF05549.6 gi|284164345|ref|YP_003402624.1| - 0.026 13.8 0.7 0.064 12.5 0.5 1.6 1 0 0 1 1 1 0 Allexivirus 40kDa protein Cep57_CLD_2 PF14197.1 gi|284164345|ref|YP_003402624.1| - 0.032 14.1 13.7 0.071 13.0 9.5 1.5 1 0 0 1 1 1 0 Centrosome localisation domain of PPC89 DUF2205 PF10224.4 gi|284164345|ref|YP_003402624.1| - 0.06 12.9 2.6 0.15 11.6 1.8 1.6 1 0 0 1 1 1 0 Predicted coiled-coil protein (DUF2205) Spc7 PF08317.6 gi|284164345|ref|YP_003402624.1| - 0.063 11.9 2.5 0.11 11.1 1.8 1.3 1 0 0 1 1 1 0 Spc7 kinetochore protein Sipho_Gp157 PF05565.6 gi|284164345|ref|YP_003402624.1| - 0.065 12.8 2.4 0.12 11.9 1.7 1.4 1 0 0 1 1 1 0 Siphovirus Gp157 V_ATPase_I PF01496.14 gi|284164345|ref|YP_003402624.1| - 0.22 9.3 3.6 0.31 8.8 2.5 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Pox_A_type_inc PF04508.7 gi|284164345|ref|YP_003402624.1| - 0.44 10.4 16.1 0.029 14.1 2.7 3.0 2 0 0 2 2 2 0 Viral A-type inclusion protein repeat Prefoldin PF02996.12 gi|284164345|ref|YP_003402624.1| - 0.47 10.1 8.0 3.8 7.1 1.4 2.5 1 1 1 2 2 2 0 Prefoldin subunit AAA_23 PF13476.1 gi|284164345|ref|YP_003402624.1| - 1.2 9.4 5.0 1.8 8.8 3.5 1.3 1 0 0 1 1 1 0 AAA domain Herpes_UL6 PF01763.11 gi|284164345|ref|YP_003402624.1| - 1.2 7.2 3.0 1.9 6.5 2.0 1.4 1 0 0 1 1 1 0 Herpesvirus UL6 like Prefoldin_2 PF01920.15 gi|284164345|ref|YP_003402624.1| - 2 8.2 11.0 7.1 6.4 2.7 2.6 1 1 1 2 2 2 0 Prefoldin subunit Bap31 PF05529.7 gi|284164345|ref|YP_003402624.1| - 5.5 6.3 4.1 14 5.1 2.8 1.6 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like UPF0058 PF01893.11 gi|284164346|ref|YP_003402625.1| - 2.4e-33 114.0 1.1 2.7e-33 113.8 0.8 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 Ada3 PF10198.4 gi|284164346|ref|YP_003402625.1| - 0.041 13.6 0.0 0.045 13.5 0.0 1.2 1 0 0 1 1 1 0 Histone acetyltransferases subunit 3 DUF998 PF06197.8 gi|284164347|ref|YP_003402626.1| - 5.1e-16 58.5 33.4 6.4e-16 58.1 23.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF998) DUF202 PF02656.10 gi|284164347|ref|YP_003402626.1| - 3.8 7.8 12.8 13 6.1 0.1 3.6 2 1 1 3 3 3 0 Domain of unknown function (DUF202) ABC_tran PF00005.22 gi|284164348|ref|YP_003402627.1| - 1.5e-34 119.1 0.0 2.4e-34 118.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|284164348|ref|YP_003402627.1| - 7.4e-12 45.0 2.8 2.9e-11 43.2 0.5 2.5 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.1 gi|284164348|ref|YP_003402627.1| - 1.5e-06 28.3 0.0 0.006 16.5 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|284164348|ref|YP_003402627.1| - 0.0007 19.6 2.1 0.0018 18.2 1.5 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|284164348|ref|YP_003402627.1| - 0.0009 19.3 0.5 0.006 16.7 0.4 2.0 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.10 gi|284164348|ref|YP_003402627.1| - 0.0015 17.3 0.1 0.0024 16.6 0.1 1.2 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA PF00004.24 gi|284164348|ref|YP_003402627.1| - 0.0094 16.1 0.1 0.032 14.4 0.1 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.1 gi|284164348|ref|YP_003402627.1| - 0.011 15.6 0.5 0.054 13.4 0.3 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF258 PF03193.11 gi|284164348|ref|YP_003402627.1| - 0.016 14.4 0.1 0.04 13.1 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function, DUF258 NB-ARC PF00931.17 gi|284164348|ref|YP_003402627.1| - 0.032 13.0 0.0 0.05 12.4 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_14 PF13173.1 gi|284164348|ref|YP_003402627.1| - 0.033 14.0 0.0 0.071 13.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|284164348|ref|YP_003402627.1| - 0.043 13.5 0.0 0.086 12.5 0.0 1.5 2 0 0 2 2 2 0 Archaeal ATPase AAA_19 PF13245.1 gi|284164348|ref|YP_003402627.1| - 0.051 13.3 0.0 0.13 12.0 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_17 PF13207.1 gi|284164348|ref|YP_003402627.1| - 0.18 12.6 2.0 0.77 10.5 1.4 2.1 1 1 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|284164350|ref|YP_003402629.1| - 2.9e-50 170.6 0.0 4.3e-50 170.1 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein FtsK_SpoIIIE PF01580.13 gi|284164350|ref|YP_003402629.1| - 0.027 13.9 0.4 5.4 6.4 0.0 2.8 3 1 0 3 3 3 0 FtsK/SpoIIIE family AAA_29 PF13555.1 gi|284164350|ref|YP_003402629.1| - 0.044 13.2 0.0 0.093 12.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain T2SF PF00482.18 gi|284164351|ref|YP_003402630.1| - 6.7e-35 119.7 6.9 1.9e-19 69.8 1.8 2.6 2 0 0 2 2 2 2 Type II secretion system (T2SS), protein F Abhydrolase_9_N PF15420.1 gi|284164351|ref|YP_003402630.1| - 1.9 8.1 11.0 0.32 10.7 2.2 2.8 3 0 0 3 3 3 0 Alpha/beta-hydrolase family N-terminus Methyltransf_11 PF08241.7 gi|284164352|ref|YP_003402631.1| - 6.5e-19 68.2 0.1 1.1e-18 67.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|284164352|ref|YP_003402631.1| - 6.9e-13 48.4 0.0 9.1e-13 48.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|284164352|ref|YP_003402631.1| - 2.4e-12 47.4 0.8 5.8e-12 46.1 0.1 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|284164352|ref|YP_003402631.1| - 3.1e-11 43.6 0.0 7e-11 42.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|284164352|ref|YP_003402631.1| - 9.6e-11 41.9 0.1 2.1e-10 40.8 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|284164352|ref|YP_003402631.1| - 1.4e-08 34.5 0.0 2e-08 34.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|284164352|ref|YP_003402631.1| - 7.8e-08 31.7 0.0 1e-07 31.3 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|284164352|ref|YP_003402631.1| - 5.4e-05 23.2 1.1 5.4e-05 23.2 0.8 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|284164352|ref|YP_003402631.1| - 6.6e-05 22.6 0.0 0.00041 20.0 0.0 1.9 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_29 PF03141.11 gi|284164352|ref|YP_003402631.1| - 0.018 13.4 0.0 0.022 13.1 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase MetW PF07021.7 gi|284164352|ref|YP_003402631.1| - 0.027 13.8 0.0 0.038 13.3 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW NodS PF05401.6 gi|284164352|ref|YP_003402631.1| - 0.064 12.6 0.0 0.091 12.1 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) PSII_BNR PF14870.1 gi|284164353|ref|YP_003402632.1| - 1.2e-05 24.4 7.0 0.063 12.2 0.1 3.4 1 1 3 4 4 4 4 Photosynthesis system II assembly factor YCF48 Tubulin_2 PF13809.1 gi|284164354|ref|YP_003402633.1| - 4.3e-11 42.3 0.2 1.1e-10 40.9 0.1 1.7 1 1 0 1 1 1 1 Tubulin like Tubulin PF00091.20 gi|284164354|ref|YP_003402633.1| - 1.2e-07 31.8 0.0 1.1e-06 28.6 0.0 2.4 2 0 0 2 2 2 1 Tubulin/FtsZ family, GTPase domain Baculo_PEP_C PF04513.7 gi|284164354|ref|YP_003402633.1| - 0.0024 17.7 0.8 0.0024 17.7 0.6 3.9 3 1 1 4 4 4 2 Baculovirus polyhedron envelope protein, PEP, C terminus YjeF_N PF03853.10 gi|284164354|ref|YP_003402633.1| - 0.096 12.2 0.0 0.31 10.6 0.0 1.8 1 0 0 1 1 1 0 YjeF-related protein N-terminus FlxA PF14282.1 gi|284164354|ref|YP_003402633.1| - 1.5 8.7 12.1 0.69 9.8 1.0 3.5 2 1 1 3 3 3 0 FlxA-like protein Prominin PF05478.6 gi|284164354|ref|YP_003402633.1| - 3.3 5.1 4.9 6.1 4.2 3.4 1.5 1 0 0 1 1 1 0 Prominin Arch_ATPase PF01637.13 gi|284164355|ref|YP_003402634.1| - 0.09 12.4 0.2 0.71 9.5 0.1 2.1 1 1 0 1 1 1 0 Archaeal ATPase DUF95 PF01944.12 gi|284164355|ref|YP_003402634.1| - 0.8 9.3 8.4 2.3 7.7 5.8 1.8 1 0 0 1 1 1 0 Integral membrane protein DUF95 DUF4369 PF14289.1 gi|284164356|ref|YP_003402635.1| - 1.7e-05 24.7 6.7 0.028 14.4 0.4 4.0 2 1 1 4 4 4 3 Domain of unknown function (DUF4369) fn3 PF00041.16 gi|284164356|ref|YP_003402635.1| - 0.00025 21.1 0.9 2.8 8.1 0.0 4.2 4 0 0 4 4 4 1 Fibronectin type III domain YceI PF04264.8 gi|284164356|ref|YP_003402635.1| - 0.00076 19.4 14.8 0.11 12.4 1.8 4.1 1 1 2 3 3 3 2 YceI-like domain RskA PF10099.4 gi|284164356|ref|YP_003402635.1| - 0.0077 15.9 8.7 1.7 8.3 0.3 3.9 4 0 0 4 4 4 2 Anti-sigma-K factor rskA Hydrolase_like PF13242.1 gi|284164356|ref|YP_003402635.1| - 0.0081 15.8 0.1 15 5.4 0.0 3.7 4 0 0 4 4 4 1 HAD-hyrolase-like DUF2141 PF09912.4 gi|284164356|ref|YP_003402635.1| - 0.0082 15.7 0.6 15 5.2 0.0 4.2 5 0 0 5 5 5 1 Uncharacterized protein conserved in bacteria (DUF2141) DUF1541 PF07563.6 gi|284164356|ref|YP_003402635.1| - 0.039 13.6 0.7 7.8 6.2 0.0 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF1541) DUF1735 PF08522.5 gi|284164356|ref|YP_003402635.1| - 0.13 12.6 2.2 23 5.4 0.0 3.5 3 0 0 3 3 3 0 Domain of unknown function (DUF1735) Na_H_antiporter PF03553.9 gi|284164357|ref|YP_003402636.1| - 1.2e-57 195.2 26.3 1.2e-57 195.2 18.2 3.5 3 1 1 4 4 4 2 Na+/H+ antiporter family Aminotran_3 PF00202.16 gi|284164358|ref|YP_003402637.1| - 1.7e-70 237.5 0.0 4e-70 236.3 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class-III Arginase PF00491.16 gi|284164359|ref|YP_003402638.1| - 1.2e-75 254.3 6.1 1.4e-75 254.1 4.2 1.0 1 0 0 1 1 1 1 Arginase family ELFV_dehydrog PF00208.16 gi|284164360|ref|YP_003402639.1| - 2.3e-68 230.4 0.0 3.2e-68 229.9 0.0 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|284164360|ref|YP_003402639.1| - 1.5e-48 163.6 0.0 2.2e-48 163.1 0.0 1.3 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|284164360|ref|YP_003402639.1| - 0.00067 18.8 0.0 0.0012 18.0 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Bac_GDH PF05088.7 gi|284164360|ref|YP_003402639.1| - 0.031 11.7 0.0 0.055 10.8 0.0 1.3 1 0 0 1 1 1 0 Bacterial NAD-glutamate dehydrogenase IlvN PF07991.7 gi|284164360|ref|YP_003402639.1| - 0.041 13.2 0.0 0.081 12.2 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain IclR PF01614.13 gi|284164361|ref|YP_003402640.1| - 6.1e-33 113.2 0.0 8.7e-33 112.7 0.0 1.2 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|284164361|ref|YP_003402640.1| - 3.9e-08 32.7 0.0 7.3e-08 31.8 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|284164361|ref|YP_003402640.1| - 0.00072 18.8 0.0 0.0016 17.7 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|284164361|ref|YP_003402640.1| - 0.022 14.4 0.2 0.039 13.6 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Rio2_N PF09202.6 gi|284164361|ref|YP_003402640.1| - 0.024 14.7 0.0 0.076 13.0 0.0 1.8 1 0 0 1 1 1 0 Rio2, N-terminal HTH_11 PF08279.7 gi|284164361|ref|YP_003402640.1| - 0.12 12.0 0.1 0.53 9.9 0.0 2.1 2 0 0 2 2 2 0 HTH domain DUF1803 PF08820.5 gi|284164361|ref|YP_003402640.1| - 0.12 12.0 0.4 2.7 7.7 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1803) Radical_SAM PF04055.16 gi|284164362|ref|YP_003402641.1| - 8e-12 45.6 0.7 9.1e-10 38.9 0.1 2.2 1 1 1 2 2 2 2 Radical SAM superfamily Fer4_12 PF13353.1 gi|284164362|ref|YP_003402641.1| - 9.4e-08 32.2 0.0 2.2e-07 31.0 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|284164362|ref|YP_003402641.1| - 0.0002 21.3 0.2 0.00059 19.8 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain Phage_portal_2 PF05136.8 gi|284164362|ref|YP_003402641.1| - 0.041 12.4 0.1 0.063 11.8 0.0 1.2 1 0 0 1 1 1 0 Phage portal protein, lambda family DICT PF10069.4 gi|284164363|ref|YP_003402642.1| - 2.2e-16 59.5 0.0 3.3e-16 58.9 0.0 1.3 1 0 0 1 1 1 1 Sensory domain found in DIguanylate Cyclases & Two-component systems RAM PF15320.1 gi|284164363|ref|YP_003402642.1| - 0.042 14.1 0.0 0.099 12.9 0.0 1.7 1 0 0 1 1 1 0 mRNA cap methylation, RNMT-activating mini protein Acetyltransf_1 PF00583.19 gi|284164365|ref|YP_003402644.1| - 1.9e-09 37.4 0.1 2.7e-09 36.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|284164365|ref|YP_003402644.1| - 1.3e-07 31.7 0.1 1.9e-07 31.2 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|284164365|ref|YP_003402644.1| - 1e-05 25.5 0.0 1.6e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|284164365|ref|YP_003402644.1| - 0.003 17.3 0.0 0.0051 16.6 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.1 gi|284164365|ref|YP_003402644.1| - 0.0094 15.8 0.1 0.019 14.8 0.1 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain MEDS PF14417.1 gi|284164366|ref|YP_003402645.1| - 1.2e-33 115.8 0.1 3.2e-33 114.4 0.1 1.7 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain HATPase_c PF02518.21 gi|284164366|ref|YP_003402645.1| - 4.2e-30 103.7 0.0 9.8e-30 102.5 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.1 gi|284164366|ref|YP_003402645.1| - 1.3e-21 76.9 0.0 0.0001 22.4 0.0 4.8 4 0 0 4 4 4 4 GAF domain GAF_2 PF13185.1 gi|284164366|ref|YP_003402645.1| - 2.2e-11 44.4 5.8 0.0049 17.3 0.0 5.7 5 1 0 5 5 5 3 GAF domain HisKA PF00512.20 gi|284164366|ref|YP_003402645.1| - 6.3e-10 38.8 0.7 2.5e-09 36.9 0.0 2.5 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain GAF PF01590.21 gi|284164366|ref|YP_003402645.1| - 4.1e-06 26.9 0.0 0.19 11.8 0.0 3.8 3 1 0 3 3 3 2 GAF domain HATPase_c_5 PF14501.1 gi|284164366|ref|YP_003402645.1| - 4.8e-06 26.2 0.0 9.9e-06 25.2 0.0 1.5 1 0 0 1 1 1 1 GHKL domain KaiC PF06745.8 gi|284164366|ref|YP_003402645.1| - 0.0011 18.1 0.0 0.0024 17.0 0.0 1.5 1 0 0 1 1 1 1 KaiC HATPase_c_3 PF13589.1 gi|284164366|ref|YP_003402645.1| - 0.0051 16.4 0.0 0.011 15.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPG_I PF00867.13 gi|284164367|ref|YP_003402646.1| - 1.4e-23 82.7 0.0 2.5e-23 81.9 0.0 1.4 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.12 gi|284164367|ref|YP_003402646.1| - 4.4e-11 42.9 0.0 7.6e-11 42.1 0.0 1.4 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.15 gi|284164367|ref|YP_003402646.1| - 4.5e-05 23.6 0.0 8.5e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold DUF4436 PF14494.1 gi|284164368|ref|YP_003402647.1| - 0.13 11.5 3.5 0.33 10.2 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4436) YesK PF14150.1 gi|284164368|ref|YP_003402647.1| - 0.3 11.2 3.4 0.38 10.8 2.4 1.1 1 0 0 1 1 1 0 YesK-like protein CopD PF05425.8 gi|284164368|ref|YP_003402647.1| - 1.1 9.4 12.0 1.8 8.8 8.3 1.4 1 1 0 1 1 1 0 Copper resistance protein D MEDS PF14417.1 gi|284164369|ref|YP_003402648.1| - 2.2e-29 101.8 0.1 6e-29 100.4 0.1 1.7 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain HATPase_c PF02518.21 gi|284164369|ref|YP_003402648.1| - 1.6e-26 92.1 0.0 3.2e-26 91.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.1 gi|284164369|ref|YP_003402648.1| - 3.1e-22 79.0 0.0 5.2e-09 36.2 0.0 4.2 4 0 0 4 4 4 3 GAF domain HisKA PF00512.20 gi|284164369|ref|YP_003402648.1| - 3.4e-13 49.3 0.5 1.3e-12 47.4 0.1 2.3 1 1 0 1 1 1 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.1 gi|284164369|ref|YP_003402648.1| - 8.7e-12 45.7 0.4 0.0032 17.9 0.0 4.0 3 0 0 3 3 3 3 GAF domain GAF PF01590.21 gi|284164369|ref|YP_003402648.1| - 6e-08 32.9 0.0 0.0022 18.1 0.0 3.3 4 0 0 4 4 4 2 GAF domain HATPase_c_3 PF13589.1 gi|284164369|ref|YP_003402648.1| - 0.019 14.6 0.0 0.038 13.6 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KaiC PF06745.8 gi|284164369|ref|YP_003402648.1| - 0.072 12.1 0.1 0.2 10.7 0.0 1.7 2 0 0 2 2 2 0 KaiC HATPase_c_5 PF14501.1 gi|284164369|ref|YP_003402648.1| - 0.081 12.6 0.0 0.17 11.5 0.0 1.5 1 0 0 1 1 1 0 GHKL domain Sigma70_r1_1 PF03979.9 gi|284164369|ref|YP_003402648.1| - 0.19 11.6 4.6 3.3 7.7 0.0 3.0 3 0 0 3 3 3 0 Sigma-70 factor, region 1.1 Pyr_redox PF00070.22 gi|284164370|ref|YP_003402649.1| - 1.4e-13 50.9 0.3 3e-10 40.3 0.2 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|284164370|ref|YP_003402649.1| - 3.8e-10 39.9 0.0 1.1e-09 38.4 0.0 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|284164370|ref|YP_003402649.1| - 0.00026 21.1 1.5 0.19 11.7 0.1 3.5 1 1 3 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|284164370|ref|YP_003402649.1| - 0.00046 19.1 7.3 0.22 10.4 0.2 4.2 4 1 0 4 4 4 2 FAD dependent oxidoreductase NAD_binding_9 PF13454.1 gi|284164370|ref|YP_003402649.1| - 0.00066 19.4 1.1 1.1 8.9 0.0 3.7 3 1 1 4 4 4 1 FAD-NAD(P)-binding NAD_binding_8 PF13450.1 gi|284164370|ref|YP_003402649.1| - 0.0016 18.3 0.3 3.5 7.7 0.2 3.1 3 0 0 3 3 3 2 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|284164370|ref|YP_003402649.1| - 0.051 12.4 1.8 1.4 7.7 0.0 2.7 2 2 1 3 3 3 0 Lycopene cyclase protein K_oxygenase PF13434.1 gi|284164370|ref|YP_003402649.1| - 0.15 10.9 0.0 0.38 9.6 0.0 1.6 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) DCD PF06559.6 gi|284164371|ref|YP_003402650.1| - 0.026 12.9 0.0 0.027 12.8 0.0 1.0 1 0 0 1 1 1 0 2'-deoxycytidine 5'-triphosphate deaminase (DCD) HTH_24 PF13412.1 gi|284164372|ref|YP_003402651.1| - 1.8e-11 43.1 0.0 2.9e-11 42.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|284164372|ref|YP_003402651.1| - 4.1e-10 39.0 1.2 8.6e-10 37.9 0.8 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|284164372|ref|YP_003402651.1| - 0.00025 20.6 0.0 0.00045 19.8 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|284164372|ref|YP_003402651.1| - 0.0026 17.3 0.3 0.0053 16.3 0.1 1.6 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|284164372|ref|YP_003402651.1| - 0.003 17.3 0.0 0.0069 16.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain P2 PF07194.6 gi|284164372|ref|YP_003402651.1| - 0.0081 15.9 0.3 0.033 14.0 0.0 2.0 1 1 1 2 2 2 1 P2 response regulator binding domain HTH_Crp_2 PF13545.1 gi|284164372|ref|YP_003402651.1| - 0.084 12.6 0.0 0.2 11.4 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_27 PF13463.1 gi|284164372|ref|YP_003402651.1| - 0.11 12.8 0.6 0.54 10.6 0.0 2.2 2 1 0 2 2 2 0 Winged helix DNA-binding domain TrmB PF01978.14 gi|284164372|ref|YP_003402651.1| - 0.12 12.1 0.1 0.31 10.7 0.0 1.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB GHMP_kinases_N PF00288.21 gi|284164373|ref|YP_003402652.1| - 1.1e-06 28.5 5.0 7.3e-06 25.9 3.2 2.3 1 1 1 2 2 2 1 GHMP kinases N terminal domain Phage_AlpA PF05930.7 gi|284164373|ref|YP_003402652.1| - 0.05 13.3 0.0 0.1 12.3 0.0 1.5 1 0 0 1 1 1 0 Prophage CP4-57 regulatory protein (AlpA) TarH PF02203.10 gi|284164373|ref|YP_003402652.1| - 0.073 12.9 2.5 0.96 9.2 0.4 2.3 2 0 0 2 2 2 0 Tar ligand binding domain homologue FliT PF05400.8 gi|284164374|ref|YP_003402653.1| - 0.0027 18.0 0.6 0.0027 18.0 0.4 2.1 1 1 2 3 3 3 1 Flagellar protein FliT DUF4349 PF14257.1 gi|284164374|ref|YP_003402653.1| - 0.051 12.8 3.9 0.065 12.4 2.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4349) ApoLp-III PF07464.6 gi|284164374|ref|YP_003402653.1| - 0.055 13.4 0.8 0.093 12.7 0.4 1.5 1 1 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) HSCB_C PF07743.8 gi|284164374|ref|YP_003402653.1| - 0.97 9.9 6.0 0.89 10.0 1.3 2.5 2 1 1 3 3 3 0 HSCB C-terminal oligomerisation domain MerR-DNA-bind PF09278.6 gi|284164374|ref|YP_003402653.1| - 2.2 8.7 5.2 4.4 7.7 0.4 2.7 2 1 0 2 2 2 0 MerR, DNA binding FUSC PF04632.7 gi|284164374|ref|YP_003402653.1| - 2.3 6.5 6.9 2.9 6.2 4.8 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family HhH-GPD PF00730.20 gi|284164375|ref|YP_003402654.1| - 4.2e-22 78.4 0.0 9.1e-22 77.3 0.0 1.5 2 0 0 2 2 2 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|284164375|ref|YP_003402654.1| - 5.2e-09 35.3 0.0 1.2e-08 34.1 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.4 gi|284164375|ref|YP_003402654.1| - 5.4e-07 29.5 3.1 9.8e-07 28.7 2.1 1.5 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_5 PF14520.1 gi|284164375|ref|YP_003402654.1| - 0.016 15.4 0.1 0.096 12.8 0.0 2.1 2 0 0 2 2 2 0 Helix-hairpin-helix domain DUF2400 PF09674.5 gi|284164375|ref|YP_003402654.1| - 0.12 12.0 0.0 0.28 10.8 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2400) Menin PF05053.8 gi|284164376|ref|YP_003402655.1| - 8 4.4 8.4 8.2 4.4 5.8 1.0 1 0 0 1 1 1 0 Menin SPW PF03779.9 gi|284164377|ref|YP_003402656.1| - 1.5e-07 30.6 8.6 0.00025 20.3 0.2 2.4 2 0 0 2 2 2 2 SPW repeat YfhO PF09586.5 gi|284164377|ref|YP_003402656.1| - 0.012 13.6 0.0 0.015 13.3 0.0 1.0 1 0 0 1 1 1 0 Bacterial membrane protein YfhO Bax1-I PF01027.15 gi|284164377|ref|YP_003402656.1| - 0.038 13.5 3.3 0.047 13.2 2.3 1.0 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 7TMR-DISM_7TM PF07695.6 gi|284164377|ref|YP_003402656.1| - 0.2 11.3 3.3 2.7 7.6 3.2 1.7 1 1 0 1 1 1 0 7TM diverse intracellular signalling NAD_kinase PF01513.16 gi|284164378|ref|YP_003402657.1| - 3.2e-15 55.6 0.1 3.7e-15 55.4 0.1 1.1 1 0 0 1 1 1 1 ATP-NAD kinase Peptidase_M28 PF04389.12 gi|284164379|ref|YP_003402658.1| - 5.1e-28 98.0 1.0 7.6e-28 97.4 0.7 1.3 1 0 0 1 1 1 1 Peptidase family M28 PA PF02225.17 gi|284164379|ref|YP_003402658.1| - 3.8e-11 42.5 0.0 7.6e-11 41.5 0.0 1.5 1 0 0 1 1 1 1 PA domain Peptidase_M20 PF01546.23 gi|284164379|ref|YP_003402658.1| - 2.1e-05 24.1 0.3 3.1e-05 23.5 0.2 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M42 PF05343.9 gi|284164379|ref|YP_003402658.1| - 7.3e-05 21.6 1.0 0.00014 20.7 0.5 1.6 1 1 0 1 1 1 1 M42 glutamyl aminopeptidase Cyt_c_ox_IV PF12270.3 gi|284164381|ref|YP_003402660.1| - 0.085 12.6 4.7 0.09 12.5 0.4 2.1 2 0 0 2 2 2 0 Cytochrome c oxidase subunit IV ApoL PF05461.6 gi|284164381|ref|YP_003402660.1| - 2.6 7.2 6.4 3.4 6.8 4.5 1.2 1 0 0 1 1 1 0 Apolipoprotein L DUF3040 PF11239.3 gi|284164381|ref|YP_003402660.1| - 9.2 6.3 10.0 3.5 7.7 0.1 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF3040) DUF3007 PF11460.3 gi|284164382|ref|YP_003402661.1| - 0.0005 20.1 0.1 0.00059 19.8 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3007) NfeD PF01957.13 gi|284164382|ref|YP_003402661.1| - 0.097 12.8 0.2 0.11 12.6 0.1 1.1 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding TcpE PF12648.2 gi|284164382|ref|YP_003402661.1| - 0.17 12.0 1.2 0.23 11.6 0.8 1.1 1 0 0 1 1 1 0 TcpE family ACR_tran PF00873.14 gi|284164382|ref|YP_003402661.1| - 0.25 8.6 2.3 1.6 6.0 1.6 1.8 1 1 0 1 1 1 0 AcrB/AcrD/AcrF family CcoS PF03597.10 gi|284164382|ref|YP_003402661.1| - 1.2 8.6 6.9 0.37 10.2 1.1 2.1 2 0 0 2 2 2 0 Cytochrome oxidase maturation protein cbb3-type FixQ PF05545.6 gi|284164382|ref|YP_003402661.1| - 1.4 8.5 7.0 1.4 8.6 0.1 2.2 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ CDP-OH_P_tran_2 PF08009.6 gi|284164382|ref|YP_003402661.1| - 4 7.2 6.1 2.8 7.7 3.0 1.7 1 1 1 2 2 2 0 CDP-alcohol phosphatidyltransferase 2 CTV_P6 PF06706.6 gi|284164383|ref|YP_003402662.1| - 0.4 10.2 3.5 0.5 9.9 2.4 1.1 1 0 0 1 1 1 0 Citrus tristeza virus 6-kDa protein DctQ PF04290.7 gi|284164384|ref|YP_003402663.1| - 0.039 13.6 1.5 0.051 13.3 1.0 1.2 1 0 0 1 1 1 0 Tripartite ATP-independent periplasmic transporters, DctQ component p53-inducible11 PF14936.1 gi|284164384|ref|YP_003402663.1| - 0.14 12.0 1.0 0.17 11.8 0.7 1.1 1 0 0 1 1 1 0 Tumour protein p53-inducible protein 11 AMP-binding PF00501.23 gi|284164385|ref|YP_003402664.1| - 4.5e-92 308.6 0.2 5.6e-92 308.3 0.1 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|284164385|ref|YP_003402664.1| - 9.6e-19 68.1 0.6 2.4e-18 66.8 0.4 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain MM_CoA_mutase PF01642.17 gi|284164388|ref|YP_003402667.1| - 1.3e-191 637.2 0.1 1.5e-191 637.0 0.1 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase DUF3037 PF11236.3 gi|284164388|ref|YP_003402667.1| - 0.12 12.3 0.3 2 8.4 0.1 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3037) zinc_ribbon_5 PF13719.1 gi|284164389|ref|YP_003402668.1| - 0.064 12.8 0.3 0.064 12.8 0.2 1.7 2 0 0 2 2 2 0 zinc-ribbon domain RCC1 PF00415.13 gi|284164389|ref|YP_003402668.1| - 0.11 12.6 0.7 0.7 10.1 0.1 1.9 2 0 0 2 2 2 0 Regulator of chromosome condensation (RCC1) repeat DUF3133 PF11331.3 gi|284164389|ref|YP_003402668.1| - 0.21 11.1 0.1 0.21 11.1 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3133) zinc_ribbon_4 PF13717.1 gi|284164389|ref|YP_003402668.1| - 0.23 11.2 0.3 0.23 11.2 0.2 1.7 2 0 0 2 2 2 0 zinc-ribbon domain Ribosomal_S27 PF01599.14 gi|284164389|ref|YP_003402668.1| - 2 8.2 5.4 65 3.4 3.7 2.1 1 1 0 1 1 1 0 Ribosomal protein S27a PucR PF07905.6 gi|284164390|ref|YP_003402669.1| - 0.016 14.7 0.0 0.022 14.3 0.0 1.4 1 0 0 1 1 1 0 Purine catabolism regulatory protein-like family CBS PF00571.23 gi|284164391|ref|YP_003402670.1| - 6.6e-27 93.0 4.3 5.8e-13 48.4 0.0 3.0 3 0 0 3 3 3 2 CBS domain ParBc PF02195.13 gi|284164391|ref|YP_003402670.1| - 1.9e-09 37.5 0.1 4.5e-09 36.2 0.1 1.7 1 1 0 1 1 1 1 ParB-like nuclease domain ParBc_2 PF08857.6 gi|284164391|ref|YP_003402670.1| - 0.0017 18.1 0.1 0.018 14.8 0.1 2.1 1 1 0 1 1 1 1 Putative ParB-like nuclease Dehyd-heme_bind PF09098.5 gi|284164391|ref|YP_003402670.1| - 0.02 14.3 0.2 0.042 13.3 0.1 1.5 1 1 0 1 1 1 0 Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding DHH PF01368.15 gi|284164392|ref|YP_003402671.1| - 4.3e-15 55.6 0.0 9.3e-15 54.5 0.0 1.5 1 0 0 1 1 1 1 DHH family TrkA_N PF02254.13 gi|284164392|ref|YP_003402671.1| - 2.7e-12 46.6 0.0 7e-12 45.3 0.0 1.7 1 0 0 1 1 1 1 TrkA-N domain DHHA1 PF02272.14 gi|284164392|ref|YP_003402671.1| - 1.1e-11 44.2 0.7 3.5e-11 42.6 0.2 2.1 2 0 0 2 2 2 1 DHHA1 domain Metallophos_2 PF12850.2 gi|284164392|ref|YP_003402671.1| - 0.023 14.5 0.2 0.088 12.6 0.0 2.0 2 0 0 2 2 2 0 Calcineurin-like phosphoesterase superfamily domain DUF1863 PF08937.6 gi|284164392|ref|YP_003402671.1| - 0.17 11.9 0.0 0.33 10.9 0.0 1.4 1 0 0 1 1 1 0 MTH538 TIR-like domain (DUF1863) Oxidored_q1 PF00361.15 gi|284164393|ref|YP_003402672.1| - 7.7e-61 205.7 11.1 7.7e-61 205.7 7.7 1.9 2 0 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|284164393|ref|YP_003402672.1| - 7.4e-05 22.2 3.0 0.00023 20.6 2.1 1.9 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1 PF00361.15 gi|284164394|ref|YP_003402673.1| - 2.2e-65 220.6 18.7 2.2e-65 220.6 13.0 1.9 2 0 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q5_N PF01059.12 gi|284164394|ref|YP_003402673.1| - 0.00012 21.8 0.3 0.00012 21.8 0.2 3.3 4 1 0 4 4 4 1 NADH-ubiquinone oxidoreductase chain 4, amino terminus DUF3094 PF11293.3 gi|284164394|ref|YP_003402673.1| - 0.032 13.6 0.0 0.15 11.5 0.0 2.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3094) Oxidored_q1 PF00361.15 gi|284164395|ref|YP_003402674.1| - 7.8e-73 245.0 13.7 7.8e-73 245.0 9.5 1.9 2 0 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|284164395|ref|YP_003402674.1| - 4.2e-11 42.2 0.6 1.2e-10 40.7 0.0 2.1 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1_C PF01010.14 gi|284164395|ref|YP_003402674.1| - 0.005 16.3 0.0 0.012 15.1 0.0 1.5 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I) subunit C-terminus Peptidase_M50 PF02163.17 gi|284164395|ref|YP_003402674.1| - 0.0054 15.7 0.0 0.024 13.5 0.0 2.4 1 1 0 1 1 1 1 Peptidase family M50 Oxidored_q2 PF00420.19 gi|284164396|ref|YP_003402675.1| - 4.9e-21 74.1 9.0 5.3e-21 74.0 6.3 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF4059 PF13268.1 gi|284164396|ref|YP_003402675.1| - 0.25 11.5 5.5 0.42 10.8 0.0 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF4059) NicO PF03824.11 gi|284164396|ref|YP_003402675.1| - 0.31 10.3 7.3 0.21 10.8 4.1 1.3 1 1 0 1 1 1 0 High-affinity nickel-transport protein DUF1700 PF08006.6 gi|284164396|ref|YP_003402675.1| - 6.8 5.9 7.2 6.8 5.9 5.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1700) Oxidored_q3 PF00499.15 gi|284164398|ref|YP_003402677.1| - 3e-15 56.2 2.9 3.8e-15 55.9 2.0 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF4040 PF13244.1 gi|284164398|ref|YP_003402677.1| - 0.0043 17.0 11.9 0.0056 16.6 8.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4040) TerC PF03741.11 gi|284164398|ref|YP_003402677.1| - 0.039 13.3 6.3 0.074 12.4 4.3 1.5 1 1 0 1 1 1 0 Integral membrane protein TerC family Bax1-I PF01027.15 gi|284164398|ref|YP_003402677.1| - 0.056 13.0 7.7 0.067 12.7 5.3 1.1 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 MerC PF03203.9 gi|284164398|ref|YP_003402677.1| - 0.18 12.1 6.6 0.29 11.5 4.5 1.3 1 0 0 1 1 1 0 MerC mercury resistance protein DUF4191 PF13829.1 gi|284164398|ref|YP_003402677.1| - 1.1 8.3 4.9 1.6 7.8 3.4 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) DUF1469 PF07332.6 gi|284164398|ref|YP_003402677.1| - 4.5 7.0 21.0 0.68 9.6 9.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1469) DUF3099 PF11298.3 gi|284164398|ref|YP_003402677.1| - 9.6 6.0 9.3 0.69 9.7 1.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3099) Fer4 PF00037.22 gi|284164399|ref|YP_003402678.1| - 4.2e-12 45.1 9.5 2.5e-06 26.8 2.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|284164399|ref|YP_003402678.1| - 5.7e-11 42.6 11.1 9e-11 41.9 7.7 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|284164399|ref|YP_003402678.1| - 8.3e-11 41.5 9.0 1.2e-10 41.0 6.2 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|284164399|ref|YP_003402678.1| - 1.1e-08 35.6 4.9 7.5e-05 23.3 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|284164399|ref|YP_003402678.1| - 1.5e-08 34.3 10.6 2.3e-08 33.6 7.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|284164399|ref|YP_003402678.1| - 3.3e-08 33.6 12.1 8e-08 32.4 8.5 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|284164399|ref|YP_003402678.1| - 6.1e-08 32.5 10.8 1.4e-07 31.4 7.6 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|284164399|ref|YP_003402678.1| - 1.4e-07 31.0 13.0 0.00037 20.2 1.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|284164399|ref|YP_003402678.1| - 8.3e-07 28.5 10.6 0.00025 20.7 0.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|284164399|ref|YP_003402678.1| - 1.2e-06 28.3 8.9 0.0015 18.6 1.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|284164399|ref|YP_003402678.1| - 2.3e-05 24.6 11.9 0.014 15.7 8.7 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|284164399|ref|YP_003402678.1| - 7.3e-05 23.1 12.3 0.018 15.4 1.2 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|284164399|ref|YP_003402678.1| - 0.0011 19.3 15.7 0.027 15.0 3.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|284164399|ref|YP_003402678.1| - 0.035 14.6 9.2 0.28 11.7 0.5 2.6 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|284164399|ref|YP_003402678.1| - 0.11 12.9 11.1 0.28 11.6 0.5 2.9 3 0 0 3 3 3 0 4Fe-4S single cluster domain NADHdh PF00146.16 gi|284164400|ref|YP_003402679.1| - 1e-82 277.7 8.0 1.3e-82 277.3 5.5 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Complex1_49kDa PF00346.14 gi|284164401|ref|YP_003402680.1| - 1.4e-65 221.0 0.0 3.1e-43 147.7 0.0 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.14 gi|284164401|ref|YP_003402680.1| - 9.6e-30 102.8 0.0 1.7e-29 102.0 0.0 1.4 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Oxidored_q6 PF01058.17 gi|284164402|ref|YP_003402681.1| - 3.2e-21 75.3 0.1 4.5e-21 74.8 0.1 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Oxidored_q4 PF00507.14 gi|284164403|ref|YP_003402682.1| - 1.2e-26 92.5 0.2 1.5e-26 92.1 0.2 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DUF3325 PF11804.3 gi|284164403|ref|YP_003402682.1| - 0.31 10.9 6.3 0.23 11.3 1.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3325) AIRC PF00731.15 gi|284164404|ref|YP_003402683.1| - 1.3e-47 160.8 0.0 1.6e-47 160.5 0.0 1.1 1 0 0 1 1 1 1 AIR carboxylase ATP-grasp PF02222.17 gi|284164405|ref|YP_003402684.1| - 2.9e-53 179.7 0.0 4.3e-53 179.1 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|284164405|ref|YP_003402684.1| - 2e-20 73.2 0.6 1.1e-19 70.8 0.1 2.2 3 0 0 3 3 3 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|284164405|ref|YP_003402684.1| - 6.2e-08 31.7 0.0 1.5e-06 27.1 0.0 2.1 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|284164405|ref|YP_003402684.1| - 1.2e-07 31.7 0.0 1.9e-07 31.1 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain 2-Hacid_dh_C PF02826.14 gi|284164405|ref|YP_003402684.1| - 2.8e-06 26.5 0.0 4.9e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Dala_Dala_lig_C PF07478.8 gi|284164405|ref|YP_003402684.1| - 3.2e-06 26.6 0.0 3.7e-05 23.1 0.0 2.2 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus XdhC_C PF13478.1 gi|284164405|ref|YP_003402684.1| - 0.00021 21.6 0.0 0.00041 20.6 0.0 1.5 1 0 0 1 1 1 1 XdhC Rossmann domain CPSase_L_D2 PF02786.12 gi|284164405|ref|YP_003402684.1| - 0.00078 18.7 0.1 0.0012 18.1 0.1 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain RimK PF08443.6 gi|284164405|ref|YP_003402684.1| - 0.0023 17.4 0.0 0.009 15.5 0.0 2.0 2 1 0 2 2 2 1 RimK-like ATP-grasp domain 3HCDH_N PF02737.13 gi|284164405|ref|YP_003402684.1| - 0.013 15.1 0.0 0.025 14.2 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.22 gi|284164405|ref|YP_003402684.1| - 0.018 15.4 0.0 0.07 13.5 0.0 2.1 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase GARS_A PF01071.14 gi|284164405|ref|YP_003402684.1| - 0.033 13.7 0.0 0.053 13.0 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NAD_binding_10 PF13460.1 gi|284164405|ref|YP_003402684.1| - 0.037 14.0 0.2 0.082 12.9 0.1 1.6 1 0 0 1 1 1 0 NADH(P)-binding Acetyltransf_6 PF13480.1 gi|284164405|ref|YP_003402684.1| - 0.063 13.2 1.0 2.6 7.9 0.1 2.9 3 0 0 3 3 3 0 Acetyltransferase (GNAT) domain NAD_binding_2 PF03446.10 gi|284164405|ref|YP_003402684.1| - 0.12 12.2 0.0 0.37 10.5 0.0 1.8 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.13 gi|284164405|ref|YP_003402684.1| - 0.13 12.2 0.3 1.2 9.1 0.1 2.7 2 1 0 2 2 2 0 TrkA-N domain DMRL_synthase PF00885.14 gi|284164406|ref|YP_003402685.1| - 1.2e-32 112.5 0.7 1.4e-32 112.3 0.5 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Aminotran_1_2 PF00155.16 gi|284164407|ref|YP_003402686.1| - 6.5e-65 219.4 0.0 7.3e-65 219.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|284164407|ref|YP_003402686.1| - 3.7e-06 26.2 0.1 2.6e-05 23.5 0.0 1.9 2 0 0 2 2 2 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|284164407|ref|YP_003402686.1| - 5e-05 21.7 0.0 7.1e-05 21.2 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|284164407|ref|YP_003402686.1| - 0.00068 18.7 0.3 0.0011 18.0 0.2 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|284164407|ref|YP_003402686.1| - 0.0025 16.6 0.0 0.0047 15.7 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class-V HNH PF01844.18 gi|284164408|ref|YP_003402687.1| - 3.4e-08 33.2 7.4 3.4e-08 33.2 5.1 4.5 6 0 0 6 6 6 1 HNH endonuclease HNH_2 PF13391.1 gi|284164408|ref|YP_003402687.1| - 0.0027 17.4 0.8 0.0066 16.2 0.6 1.7 1 0 0 1 1 1 1 HNH endonuclease DZR PF12773.2 gi|284164408|ref|YP_003402687.1| - 0.014 15.1 28.9 0.23 11.3 1.9 4.7 2 2 1 3 3 3 0 Double zinc ribbon SBP PF03110.9 gi|284164408|ref|YP_003402687.1| - 0.18 12.0 0.2 0.18 12.0 0.1 4.0 4 1 0 4 4 4 0 SBP domain OrfB_Zn_ribbon PF07282.6 gi|284164408|ref|YP_003402687.1| - 0.74 9.5 20.0 3.5 7.3 0.9 4.3 4 0 0 4 4 4 0 Putative transposase DNA-binding domain HypA PF01155.14 gi|284164408|ref|YP_003402687.1| - 0.96 9.1 24.3 4.1 7.1 0.9 4.5 1 1 3 4 4 4 0 Hydrogenase expression/synthesis hypA family zf-MYND PF01753.13 gi|284164408|ref|YP_003402687.1| - 4.2 7.3 23.8 1.6e+02 2.2 0.0 5.1 3 1 0 3 3 3 0 MYND finger DUF968 PF06147.6 gi|284164408|ref|YP_003402687.1| - 4.8 7.0 9.9 0.59 9.9 3.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF968) C1_1 PF00130.17 gi|284164408|ref|YP_003402687.1| - 6.8 6.5 25.8 0.56 9.9 0.2 4.8 4 2 0 4 4 4 0 Phorbol esters/diacylglycerol binding domain (C1 domain) FYVE_2 PF02318.11 gi|284164408|ref|YP_003402687.1| - 7.1 6.5 20.2 0.096 12.5 1.6 3.9 2 2 2 4 4 4 0 FYVE-type zinc finger TF_Zn_Ribbon PF08271.7 gi|284164408|ref|YP_003402687.1| - 7.2 6.0 22.4 4.5 6.6 0.0 4.5 4 1 0 4 4 4 0 TFIIB zinc-binding Glycos_transf_2 PF00535.21 gi|284164410|ref|YP_003402689.1| - 4.8e-13 49.1 0.0 5.5e-13 48.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|284164410|ref|YP_003402689.1| - 5e-05 23.2 0.0 5.3e-05 23.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|284164410|ref|YP_003402689.1| - 0.00038 19.6 0.0 0.00044 19.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|284164410|ref|YP_003402689.1| - 0.061 13.0 0.0 0.066 12.9 0.0 1.1 1 0 0 1 1 1 0 Glycosyl transferase family group 2 Phosphodiest PF01663.17 gi|284164411|ref|YP_003402690.1| - 1.7e-39 136.2 0.0 8.5e-38 130.6 0.0 2.0 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.13 gi|284164411|ref|YP_003402690.1| - 0.00074 18.9 0.0 0.0024 17.3 0.0 1.7 2 0 0 2 2 2 1 Metalloenzyme superfamily HTH_10 PF04967.7 gi|284164412|ref|YP_003402691.1| - 3e-18 65.1 0.0 4.7e-18 64.5 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|284164412|ref|YP_003402691.1| - 2.9e-09 36.1 0.0 5.5e-09 35.2 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.7 gi|284164412|ref|YP_003402691.1| - 8.3e-07 28.3 0.1 1.2e-05 24.6 0.1 2.2 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|284164412|ref|YP_003402691.1| - 9.1e-07 28.1 0.0 1.7e-06 27.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|284164412|ref|YP_003402691.1| - 2.1e-06 27.3 0.0 5e-06 26.0 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_3 PF01381.17 gi|284164412|ref|YP_003402691.1| - 9.1e-05 22.2 0.0 0.00019 21.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_AsnC-type PF13404.1 gi|284164412|ref|YP_003402691.1| - 0.00063 19.2 0.2 0.0015 18.0 0.1 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|284164412|ref|YP_003402691.1| - 0.0051 16.4 0.2 0.01 15.4 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_31 PF13560.1 gi|284164412|ref|YP_003402691.1| - 0.0098 16.0 0.0 0.019 15.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|284164412|ref|YP_003402691.1| - 0.02 14.5 0.0 0.076 12.7 0.0 2.0 1 1 0 1 1 1 0 MarR family HTH_Crp_2 PF13545.1 gi|284164412|ref|YP_003402691.1| - 0.02 14.6 0.1 0.083 12.6 0.0 2.0 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|284164412|ref|YP_003402691.1| - 0.028 14.3 0.0 0.054 13.4 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_Tnp_4 PF13613.1 gi|284164412|ref|YP_003402691.1| - 0.029 13.9 0.0 0.06 12.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_37 PF13744.1 gi|284164412|ref|YP_003402691.1| - 0.034 13.9 0.0 0.063 13.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_1 PF00126.22 gi|284164412|ref|YP_003402691.1| - 0.037 13.7 0.1 0.079 12.7 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_23 PF13384.1 gi|284164412|ref|YP_003402691.1| - 0.04 13.5 0.0 0.084 12.5 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain Phage_CI_repr PF07022.8 gi|284164412|ref|YP_003402691.1| - 0.045 13.8 0.0 0.2 11.7 0.0 1.9 2 0 0 2 2 2 0 Bacteriophage CI repressor helix-turn-helix domain HTH_19 PF12844.2 gi|284164412|ref|YP_003402691.1| - 0.071 13.1 0.0 0.16 12.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|284164412|ref|YP_003402691.1| - 0.073 12.7 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_26 PF13443.1 gi|284164412|ref|YP_003402691.1| - 0.078 13.1 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_Tnp_ISL3 PF13542.1 gi|284164412|ref|YP_003402691.1| - 0.084 12.0 0.1 0.17 11.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_36 PF13730.1 gi|284164412|ref|YP_003402691.1| - 0.16 12.1 0.0 0.3 11.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Beta_helix PF13229.1 gi|284164413|ref|YP_003402692.1| - 6.5e-05 22.7 8.6 0.74 9.5 6.0 3.4 1 1 1 2 2 2 2 Right handed beta helix region Pectate_lyase_3 PF12708.2 gi|284164413|ref|YP_003402692.1| - 0.00012 22.3 2.0 0.003 17.6 0.2 2.5 1 1 2 3 3 3 2 Pectate lyase superfamily protein Polysacc_synt PF01943.12 gi|284164414|ref|YP_003402693.1| - 4.2e-18 65.5 18.5 1.1e-17 64.2 12.8 1.7 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|284164414|ref|YP_003402693.1| - 7.7e-18 64.6 12.1 7.7e-18 64.6 8.4 4.8 5 0 0 5 5 5 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.1 gi|284164414|ref|YP_003402693.1| - 1.5e-13 50.7 23.2 1.5e-13 50.7 16.1 2.9 3 0 0 3 3 3 1 Polysaccharide biosynthesis protein MVIN PF03023.9 gi|284164414|ref|YP_003402693.1| - 6.5e-09 34.7 16.5 1.1e-08 34.0 10.4 2.0 1 1 1 2 2 2 1 MviN-like protein Glycos_transf_2 PF00535.21 gi|284164415|ref|YP_003402694.1| - 7.5e-15 55.0 0.1 7.1e-08 32.3 0.0 2.2 2 0 0 2 2 2 2 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|284164415|ref|YP_003402694.1| - 0.0013 18.5 0.3 0.15 11.8 0.2 2.2 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Claudin_2 PF13903.1 gi|284164415|ref|YP_003402694.1| - 0.024 14.3 0.4 0.031 13.9 0.3 1.2 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction Lig_chan-Glu_bd PF10613.4 gi|284164415|ref|YP_003402694.1| - 0.16 11.9 0.3 0.99 9.4 0.1 2.1 2 0 0 2 2 2 0 Ligated ion channel L-glutamate- and glycine-binding site Glycos_transf_2 PF00535.21 gi|284164416|ref|YP_003402695.1| - 2.4e-39 134.7 0.0 3.5e-39 134.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|284164416|ref|YP_003402695.1| - 7.8e-27 94.5 0.1 1.2e-26 93.9 0.1 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|284164416|ref|YP_003402695.1| - 4.9e-11 42.2 0.0 4.7e-10 39.0 0.0 2.0 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|284164416|ref|YP_003402695.1| - 1.6e-06 28.3 0.1 3.1e-06 27.4 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.1 gi|284164416|ref|YP_003402695.1| - 1.7e-06 27.8 0.0 2.9e-06 27.1 0.0 1.4 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|284164416|ref|YP_003402695.1| - 0.0012 18.1 0.0 0.0052 16.0 0.0 1.9 1 1 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_5 PF13712.1 gi|284164416|ref|YP_003402695.1| - 0.06 12.5 0.0 0.33 10.1 0.0 1.9 1 1 0 1 1 1 0 Glycosyltransferase like family ATPgrasp_ST PF14397.1 gi|284164417|ref|YP_003402696.1| - 2.1e-33 115.6 0.0 4.3e-33 114.6 0.0 1.4 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp ATPgrasp_YheCD PF14398.1 gi|284164417|ref|YP_003402696.1| - 0.039 12.7 0.0 3.9 6.1 0.0 2.2 2 0 0 2 2 2 0 YheC/D like ATP-grasp AstE_AspA PF04952.9 gi|284164418|ref|YP_003402697.1| - 1.4e-13 50.3 0.0 3.6e-13 49.0 0.0 1.7 2 0 0 2 2 2 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M14 PF00246.19 gi|284164418|ref|YP_003402697.1| - 4.4e-06 26.5 0.0 0.0074 15.9 0.0 2.5 3 0 0 3 3 3 2 Zinc carboxypeptidase PKD PF00801.15 gi|284164418|ref|YP_003402697.1| - 0.00028 20.5 0.3 0.00075 19.2 0.2 1.7 1 0 0 1 1 1 1 PKD domain RLL PF10036.4 gi|284164418|ref|YP_003402697.1| - 0.17 11.3 0.6 0.28 10.5 0.4 1.3 1 0 0 1 1 1 0 Putative carnitine deficiency-associated protein Nop14 PF04147.7 gi|284164418|ref|YP_003402697.1| - 0.21 9.4 8.1 0.24 9.2 5.6 1.0 1 0 0 1 1 1 0 Nop14-like family DUF2457 PF10446.4 gi|284164418|ref|YP_003402697.1| - 0.54 8.9 11.8 0.82 8.3 8.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) Daxx PF03344.10 gi|284164418|ref|YP_003402697.1| - 2.7 6.3 8.9 3.3 6.0 6.2 1.1 1 0 0 1 1 1 0 Daxx Family CDC45 PF02724.9 gi|284164418|ref|YP_003402697.1| - 3 5.7 7.9 4.2 5.2 5.5 1.1 1 0 0 1 1 1 0 CDC45-like protein RRN3 PF05327.6 gi|284164418|ref|YP_003402697.1| - 5 5.1 5.7 6.7 4.6 3.9 1.1 1 0 0 1 1 1 0 RNA polymerase I specific transcription initiation factor RRN3 Sigma70_ner PF04546.8 gi|284164418|ref|YP_003402697.1| - 9.7 5.7 10.6 16 5.0 7.4 1.2 1 0 0 1 1 1 0 Sigma-70, non-essential region Polysacc_deac_1 PF01522.16 gi|284164419|ref|YP_003402698.1| - 4.4e-12 45.7 0.3 8.3e-12 44.8 0.2 1.4 1 0 0 1 1 1 1 Polysaccharide deacetylase UCR_Fe-S_N PF10399.4 gi|284164419|ref|YP_003402698.1| - 0.031 13.4 0.5 0.056 12.6 0.3 1.4 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TAT_signal PF10518.4 gi|284164419|ref|YP_003402698.1| - 0.55 10.3 5.3 1.1 9.4 3.7 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Asn_synthase PF00733.16 gi|284164420|ref|YP_003402699.1| - 0.0019 17.7 0.0 0.024 14.1 0.0 2.1 2 0 0 2 2 2 1 Asparagine synthase GATase_7 PF13537.1 gi|284164420|ref|YP_003402699.1| - 0.041 13.5 0.0 0.078 12.7 0.0 1.3 1 0 0 1 1 1 0 Glutamine amidotransferase domain HTH_20 PF12840.2 gi|284164422|ref|YP_003402701.1| - 0.016 15.0 0.1 5.5 6.8 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain Mrr_N PF14338.1 gi|284164422|ref|YP_003402701.1| - 0.042 13.9 0.1 0.088 12.8 0.1 1.5 1 1 0 1 1 1 0 Mrr N-terminal domain HTH_5 PF01022.15 gi|284164422|ref|YP_003402701.1| - 0.097 12.3 0.1 1.8 8.3 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.14 gi|284164422|ref|YP_003402701.1| - 0.12 12.3 0.1 0.3 11.0 0.0 1.7 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain DUF1616 PF07760.6 gi|284164423|ref|YP_003402702.1| - 6.5e-53 179.7 0.0 8.1e-53 179.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) PMT_2 PF13231.1 gi|284164424|ref|YP_003402703.1| - 1.8e-06 27.9 21.3 1.8e-06 27.9 14.8 4.1 3 2 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF2530 PF10745.4 gi|284164424|ref|YP_003402703.1| - 0.0068 16.3 3.4 0.13 12.2 0.1 3.4 2 1 0 2 2 2 1 Protein of unknown function (DUF2530) Glycos_transf_1 PF00534.15 gi|284164425|ref|YP_003402704.1| - 2.2e-13 49.9 0.0 3.9e-13 49.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|284164425|ref|YP_003402704.1| - 4.8e-12 46.3 2.3 4.8e-12 46.3 1.6 1.9 3 0 0 3 3 3 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|284164425|ref|YP_003402704.1| - 7.2e-10 39.1 0.1 1.5e-09 38.0 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|284164425|ref|YP_003402704.1| - 3.4e-06 26.9 0.0 2.1e-05 24.4 0.0 2.0 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_4 PF13439.1 gi|284164425|ref|YP_003402704.1| - 0.00046 19.9 0.0 0.00077 19.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|284164425|ref|YP_003402704.1| - 0.004 17.4 0.0 0.0086 16.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUF354 PF04007.7 gi|284164426|ref|YP_003402705.1| - 1.7e-23 83.0 0.0 2e-23 82.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_transf_4 PF13439.1 gi|284164426|ref|YP_003402705.1| - 5.8e-06 26.1 1.4 1.4e-05 24.8 0.9 1.8 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|284164426|ref|YP_003402705.1| - 0.00022 21.4 9.7 0.00061 19.9 2.1 2.4 2 0 0 2 2 2 2 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.1 gi|284164426|ref|YP_003402705.1| - 0.0018 18.1 0.0 0.0037 17.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like B12-binding PF02310.14 gi|284164426|ref|YP_003402705.1| - 0.0025 17.6 6.1 0.0029 17.4 1.4 2.4 2 1 0 2 2 2 1 B12 binding domain PRY PF13765.1 gi|284164426|ref|YP_003402705.1| - 0.069 12.6 0.0 1.7 8.2 0.0 2.5 2 0 0 2 2 2 0 SPRY-associated domain UDPG_MGDP_dh_N PF03721.9 gi|284164427|ref|YP_003402706.1| - 1e-43 148.9 1.9 3.9e-43 146.9 0.1 2.5 3 0 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|284164427|ref|YP_003402706.1| - 1.3e-22 79.7 0.0 3.2e-22 78.5 0.0 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|284164427|ref|YP_003402706.1| - 1.4e-19 70.1 0.5 7.4e-19 67.8 0.0 2.4 3 0 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.10 gi|284164427|ref|YP_003402706.1| - 5.8e-08 32.7 0.0 2.4e-07 30.7 0.0 2.0 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|284164427|ref|YP_003402706.1| - 2.1e-07 30.8 0.0 5.2e-05 23.0 0.0 3.1 3 0 0 3 3 3 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|284164427|ref|YP_003402706.1| - 1.5e-06 27.9 0.6 3.7e-06 26.6 0.0 2.0 3 0 0 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|284164427|ref|YP_003402706.1| - 1.9e-05 24.6 0.9 0.0053 16.7 0.1 2.9 2 0 0 2 2 2 1 TrkA-N domain Methyltransf_18 PF12847.2 gi|284164427|ref|YP_003402706.1| - 0.00012 22.5 0.2 0.008 16.7 0.0 2.8 3 0 0 3 3 2 1 Methyltransferase domain 2-Hacid_dh_C PF02826.14 gi|284164427|ref|YP_003402706.1| - 0.0002 20.5 0.0 0.0075 15.4 0.0 2.5 2 1 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.11 gi|284164427|ref|YP_003402706.1| - 0.00026 20.4 0.0 0.00077 18.9 0.0 1.8 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.12 gi|284164427|ref|YP_003402706.1| - 0.0048 17.2 1.4 0.28 11.6 0.0 3.8 4 1 0 4 4 4 1 NADP oxidoreductase coenzyme F420-dependent PDH PF02153.12 gi|284164427|ref|YP_003402706.1| - 0.051 12.4 0.8 2.3 7.0 0.0 2.6 2 1 0 2 2 2 0 Prephenate dehydrogenase Paralemmin PF03285.10 gi|284164427|ref|YP_003402706.1| - 0.086 12.2 0.2 0.14 11.6 0.2 1.3 1 0 0 1 1 1 0 Paralemmin HTH_IclR PF09339.5 gi|284164428|ref|YP_003402707.1| - 5.3e-06 25.9 0.0 9.7e-06 25.0 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|284164428|ref|YP_003402707.1| - 2.1e-05 24.0 0.1 4.3e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|284164428|ref|YP_003402707.1| - 8.1e-05 21.9 0.0 0.00014 21.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.1 gi|284164428|ref|YP_003402707.1| - 0.0045 16.7 0.0 0.008 15.9 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TrmB PF01978.14 gi|284164428|ref|YP_003402707.1| - 0.077 12.7 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB SIS PF01380.17 gi|284164429|ref|YP_003402708.1| - 1.7e-49 166.7 0.8 8.4e-27 93.3 0.2 2.7 3 0 0 3 3 3 2 SIS domain GATase_6 PF13522.1 gi|284164429|ref|YP_003402708.1| - 6.7e-28 97.3 0.7 1.5e-27 96.1 0.1 1.9 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|284164429|ref|YP_003402708.1| - 4.2e-23 81.4 0.0 9.6e-23 80.2 0.0 1.7 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|284164429|ref|YP_003402708.1| - 1.2e-22 80.1 0.1 1.6e-16 59.9 0.0 2.5 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_4 PF13230.1 gi|284164429|ref|YP_003402708.1| - 2.9e-05 22.8 0.0 4.9e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Pyr_excise PF03013.9 gi|284164429|ref|YP_003402708.1| - 0.011 15.4 0.0 0.021 14.5 0.0 1.4 1 0 0 1 1 1 0 Pyrimidine dimer DNA glycosylase DUF4350 PF14258.1 gi|284164429|ref|YP_003402708.1| - 0.034 14.3 2.9 0.11 12.7 0.4 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4350) SIS_2 PF13580.1 gi|284164429|ref|YP_003402708.1| - 0.056 13.1 0.5 0.26 10.9 0.0 2.3 3 0 0 3 3 3 0 SIS domain PQQ_2 PF13360.1 gi|284164430|ref|YP_003402709.1| - 4e-31 108.3 8.6 5.3e-15 55.5 1.0 2.8 1 1 0 2 2 2 2 PQQ-like domain PQQ_3 PF13570.1 gi|284164430|ref|YP_003402709.1| - 1.4e-17 63.3 14.9 0.0045 17.2 0.1 7.6 8 0 0 8 8 8 6 PQQ-like domain PQQ PF01011.16 gi|284164430|ref|YP_003402709.1| - 1.1e-14 53.1 6.1 0.069 12.7 0.0 6.8 7 0 0 7 7 7 4 PQQ enzyme repeat TAT_signal PF10518.4 gi|284164430|ref|YP_003402709.1| - 0.094 12.7 3.3 0.34 11.0 2.3 2.0 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF3446 PF11928.3 gi|284164431|ref|YP_003402710.1| - 5.8 7.1 10.0 1.3 9.3 0.2 3.1 1 1 2 3 3 3 0 Domain of unknown function (DUF3446) TMEMspv1-c74-12 PF11044.3 gi|284164432|ref|YP_003402711.1| - 0.37 10.3 3.0 0.6 9.6 2.1 1.3 1 0 0 1 1 1 0 Plectrovirus spv1-c74 ORF 12 transmembrane protein CarboxypepD_reg PF13620.1 gi|284164433|ref|YP_003402712.1| - 1.2e-21 76.5 18.5 2.2e-12 46.8 3.5 2.7 3 0 0 3 3 3 2 Carboxypeptidase regulatory-like domain Big_1 PF02369.11 gi|284164433|ref|YP_003402712.1| - 4.4e-11 42.5 22.3 1.7e-05 24.6 4.2 2.7 2 0 0 2 2 2 2 Bacterial Ig-like domain (group 1) DUF4480 PF13715.1 gi|284164433|ref|YP_003402712.1| - 5.1e-11 42.4 7.2 5.3e-06 26.3 0.3 2.7 3 0 0 3 3 3 2 Domain of unknown function (DUF4480) phage_tail_N PF08400.5 gi|284164433|ref|YP_003402712.1| - 7.7e-11 41.8 8.0 2.9e-05 23.7 0.6 2.5 2 1 0 2 2 2 2 Prophage tail fibre N-terminal PEGA PF08308.6 gi|284164433|ref|YP_003402712.1| - 1.1e-08 34.7 0.2 0.0028 17.4 0.0 2.9 3 0 0 3 3 3 2 PEGA domain DUF824 PF05688.6 gi|284164433|ref|YP_003402712.1| - 3.2e-05 23.4 4.8 0.089 12.4 0.5 2.7 2 0 0 2 2 2 2 Salmonella repeat of unknown function (DUF824) DUF4399 PF14347.1 gi|284164433|ref|YP_003402712.1| - 0.0015 18.5 1.2 3.4 7.7 0.0 3.3 1 1 2 3 3 3 1 Domain of unknown function (DUF4399) YtkA PF13115.1 gi|284164433|ref|YP_003402712.1| - 0.0033 17.7 6.3 0.012 15.9 0.9 2.8 2 0 0 2 2 2 1 YtkA-like DUF1533 PF07550.6 gi|284164433|ref|YP_003402712.1| - 0.0045 16.9 0.3 2 8.4 0.0 2.9 3 0 0 3 3 2 1 Protein of unknown function (DUF1533) DUF2606 PF10794.4 gi|284164433|ref|YP_003402712.1| - 0.015 14.7 0.7 1 8.7 0.0 2.8 2 2 0 2 2 2 0 Protein of unknown function (DUF2606) Dioxygenase_C PF00775.16 gi|284164433|ref|YP_003402712.1| - 0.023 13.9 3.6 0.55 9.4 0.5 2.4 2 0 0 2 2 2 0 Dioxygenase PepSY_2 PF13670.1 gi|284164433|ref|YP_003402712.1| - 0.38 10.6 2.4 14 5.6 0.1 2.7 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain PIRT PF15099.1 gi|284164433|ref|YP_003402712.1| - 0.52 9.5 2.2 0.61 9.2 0.4 1.9 2 0 0 2 2 2 0 Phosphoinositide-interacting protein family RIO1 PF01163.17 gi|284164434|ref|YP_003402713.1| - 1.9e-08 33.8 0.0 3.4e-08 33.0 0.0 1.3 1 0 0 1 1 1 1 RIO1 family APH PF01636.18 gi|284164434|ref|YP_003402713.1| - 1.8e-07 31.1 4.9 0.00032 20.5 1.4 2.5 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.9 gi|284164434|ref|YP_003402713.1| - 1.2e-05 24.4 0.0 2.3e-05 23.5 0.0 1.4 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.20 gi|284164434|ref|YP_003402713.1| - 0.1 11.7 0.0 0.14 11.3 0.0 1.2 1 0 0 1 1 1 0 Protein kinase domain Acyl-CoA_dh_1 PF00441.19 gi|284164436|ref|YP_003402715.1| - 3.2e-49 166.8 0.3 4.4e-49 166.4 0.2 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|284164436|ref|YP_003402715.1| - 2.8e-36 124.5 0.0 6.6e-36 123.3 0.0 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|284164436|ref|YP_003402715.1| - 1.7e-19 69.0 0.4 7.3e-19 67.0 0.1 2.1 1 1 1 2 2 2 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|284164436|ref|YP_003402715.1| - 1.1e-16 61.3 1.0 1.7e-16 60.6 0.7 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain TAT_signal PF10518.4 gi|284164437|ref|YP_003402716.1| - 0.03 14.3 2.4 0.052 13.5 1.6 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF2062 PF09835.4 gi|284164438|ref|YP_003402717.1| - 6e-20 71.4 1.3 8.8e-20 70.8 0.9 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2062) FtsX PF02687.16 gi|284164438|ref|YP_003402717.1| - 0.081 12.6 5.8 0.47 10.2 2.3 2.0 2 0 0 2 2 2 0 FtsX-like permease family DUF202 PF02656.10 gi|284164438|ref|YP_003402717.1| - 0.62 10.3 7.5 0.13 12.4 0.4 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF202) ELFV_dehydrog PF00208.16 gi|284164439|ref|YP_003402718.1| - 1.4e-72 244.2 0.5 1.9e-72 243.8 0.4 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|284164439|ref|YP_003402718.1| - 2.1e-50 169.7 0.0 3.2e-50 169.0 0.0 1.3 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Oxidored_nitro PF00148.14 gi|284164439|ref|YP_003402718.1| - 0.002 16.8 0.0 0.003 16.2 0.0 1.2 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase 2-Hacid_dh_C PF02826.14 gi|284164439|ref|YP_003402718.1| - 0.0049 16.0 0.1 0.01 14.9 0.1 1.6 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|284164439|ref|YP_003402718.1| - 0.014 14.9 1.0 0.025 14.1 0.1 1.8 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain HpcH_HpaI PF03328.9 gi|284164440|ref|YP_003402719.1| - 1.2e-56 191.0 3.9 1.5e-56 190.7 2.7 1.1 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family C-C_Bond_Lyase PF15617.1 gi|284164440|ref|YP_003402719.1| - 2e-10 40.0 0.1 4.6e-05 22.3 0.0 2.2 2 0 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold Cdc6_C PF09079.6 gi|284164441|ref|YP_003402720.1| - 1e-13 50.7 0.6 3.3e-13 49.1 0.1 2.0 2 0 0 2 2 2 1 CDC6, C terminal AAA_22 PF13401.1 gi|284164441|ref|YP_003402720.1| - 2.4e-12 47.1 0.1 7.6e-12 45.5 0.0 1.8 2 1 1 3 3 2 1 AAA domain AAA_16 PF13191.1 gi|284164441|ref|YP_003402720.1| - 2.1e-10 40.8 1.1 1.8e-09 37.8 0.1 2.6 2 1 0 2 2 2 1 AAA ATPase domain AAA_5 PF07728.9 gi|284164441|ref|YP_003402720.1| - 1.9e-07 30.8 0.1 7.6e-07 28.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|284164441|ref|YP_003402720.1| - 4.3e-07 30.1 0.1 1.2e-06 28.7 0.0 1.8 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|284164441|ref|YP_003402720.1| - 3.5e-05 23.5 0.0 5.6e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 NACHT domain DUF815 PF05673.8 gi|284164441|ref|YP_003402720.1| - 4e-05 22.6 0.0 8.6e-05 21.5 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Sigma54_activat PF00158.21 gi|284164441|ref|YP_003402720.1| - 0.00031 20.2 0.0 0.00079 18.9 0.0 1.7 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_25 PF13481.1 gi|284164441|ref|YP_003402720.1| - 0.0019 17.6 0.0 0.0067 15.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain PhoH PF02562.11 gi|284164441|ref|YP_003402720.1| - 0.002 17.3 0.3 0.43 9.7 0.0 2.3 2 0 0 2 2 2 1 PhoH-like protein Arch_ATPase PF01637.13 gi|284164441|ref|YP_003402720.1| - 0.0021 17.7 0.0 0.0047 16.6 0.0 1.7 1 1 0 1 1 1 1 Archaeal ATPase DUF2791 PF10923.3 gi|284164441|ref|YP_003402720.1| - 0.0033 16.0 0.0 0.0072 14.9 0.0 1.5 1 0 0 1 1 1 1 P-loop Domain of unknown function (DUF2791) AAA_17 PF13207.1 gi|284164441|ref|YP_003402720.1| - 0.0052 17.5 0.4 0.021 15.6 0.2 2.2 1 1 0 1 1 1 1 AAA domain NB-ARC PF00931.17 gi|284164441|ref|YP_003402720.1| - 0.01 14.7 0.0 0.015 14.1 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_32 PF13654.1 gi|284164441|ref|YP_003402720.1| - 0.017 13.8 0.7 0.48 9.0 0.3 2.1 2 0 0 2 2 2 0 AAA domain CBFD_NFYB_HMF PF00808.18 gi|284164441|ref|YP_003402720.1| - 0.024 14.7 0.2 0.067 13.2 0.1 1.8 1 0 0 1 1 1 0 Histone-like transcription factor (CBF/NF-Y) and archaeal histone AAA_2 PF07724.9 gi|284164441|ref|YP_003402720.1| - 0.036 13.9 0.0 0.075 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) DUF2075 PF09848.4 gi|284164441|ref|YP_003402720.1| - 0.066 12.1 0.0 0.09 11.7 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) RNA_helicase PF00910.17 gi|284164441|ref|YP_003402720.1| - 0.083 13.0 0.0 0.22 11.6 0.0 1.8 1 0 0 1 1 1 0 RNA helicase ABC_tran PF00005.22 gi|284164441|ref|YP_003402720.1| - 0.087 13.1 0.1 0.31 11.3 0.0 2.1 1 1 0 1 1 1 0 ABC transporter DEAD PF00270.24 gi|284164441|ref|YP_003402720.1| - 0.11 12.0 0.5 12 5.3 0.0 2.5 3 0 0 3 3 3 0 DEAD/DEAH box helicase DsbD PF02683.10 gi|284164442|ref|YP_003402721.1| - 2.2e-12 47.0 16.4 2.9e-12 46.6 11.4 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.1 gi|284164442|ref|YP_003402721.1| - 0.013 15.2 19.8 0.041 13.6 13.5 1.9 1 1 0 1 1 1 0 Cytochrome C biogenesis protein transmembrane region Redoxin PF08534.5 gi|284164443|ref|YP_003402722.1| - 1.4e-06 27.9 0.1 1.8e-06 27.5 0.0 1.1 1 0 0 1 1 1 1 Redoxin AhpC-TSA PF00578.16 gi|284164443|ref|YP_003402722.1| - 0.00049 19.7 0.0 0.00068 19.3 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin_2 PF13098.1 gi|284164443|ref|YP_003402722.1| - 0.004 17.3 0.0 0.0058 16.8 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin PF00085.15 gi|284164443|ref|YP_003402722.1| - 0.066 12.9 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 Thioredoxin ELFV_dehydrog PF00208.16 gi|284164444|ref|YP_003402723.1| - 8.4e-70 235.1 0.0 1.1e-69 234.7 0.0 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|284164444|ref|YP_003402723.1| - 7.6e-51 171.1 0.0 1.2e-50 170.5 0.0 1.3 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|284164444|ref|YP_003402723.1| - 0.0011 18.1 0.0 0.002 17.3 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|284164444|ref|YP_003402723.1| - 0.025 14.1 0.1 0.078 12.5 0.0 1.8 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Bac_GDH PF05088.7 gi|284164444|ref|YP_003402723.1| - 0.059 10.7 0.0 0.088 10.1 0.0 1.1 1 0 0 1 1 1 0 Bacterial NAD-glutamate dehydrogenase NAD_binding_7 PF13241.1 gi|284164444|ref|YP_003402723.1| - 0.1 12.8 0.0 0.19 12.0 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding Aldedh PF00171.17 gi|284164445|ref|YP_003402724.1| - 2.6e-139 464.5 0.0 2.9e-139 464.3 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF4234 PF14018.1 gi|284164446|ref|YP_003402725.1| - 0.0054 16.4 0.1 0.0073 16.0 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4234) UPF0104 PF03706.8 gi|284164450|ref|YP_003402729.1| - 0.02 14.1 5.5 0.023 13.9 3.8 1.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0104) DUF2809 PF10990.3 gi|284164450|ref|YP_003402729.1| - 0.038 14.3 2.2 0.045 14.1 1.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2809) DUF2105 PF09878.4 gi|284164450|ref|YP_003402729.1| - 0.041 13.4 3.4 0.046 13.2 2.4 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2105) DUF1469 PF07332.6 gi|284164450|ref|YP_003402729.1| - 0.046 13.4 3.7 0.057 13.1 2.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) 2TM PF13239.1 gi|284164450|ref|YP_003402729.1| - 0.056 13.5 3.3 0.067 13.2 2.3 1.1 1 0 0 1 1 1 0 2TM domain Chordopox_L2 PF05803.7 gi|284164450|ref|YP_003402729.1| - 0.11 12.0 0.5 0.14 11.8 0.4 1.2 1 0 0 1 1 1 0 Chordopoxvirus L2 protein DUF2207 PF09972.4 gi|284164450|ref|YP_003402729.1| - 0.13 10.8 0.2 0.14 10.7 0.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) FA_desaturase PF00487.19 gi|284164450|ref|YP_003402729.1| - 0.27 10.6 4.1 0.31 10.4 2.8 1.1 1 0 0 1 1 1 0 Fatty acid desaturase DUF2244 PF10003.4 gi|284164450|ref|YP_003402729.1| - 1.8 7.9 7.2 2.1 7.7 5.0 1.2 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) FBPase PF00316.15 gi|284164451|ref|YP_003402730.1| - 2.1e-66 223.9 0.0 2.6e-66 223.6 0.0 1.0 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase Inositol_P PF00459.20 gi|284164451|ref|YP_003402730.1| - 0.00013 21.4 0.0 0.0002 20.7 0.0 1.3 1 0 0 1 1 1 1 Inositol monophosphatase family DeoC PF01791.4 gi|284164452|ref|YP_003402731.1| - 8.7e-34 116.8 0.0 1e-33 116.6 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase HHH_5 PF14520.1 gi|284164453|ref|YP_003402732.1| - 5.1e-05 23.3 0.3 0.00034 20.7 0.1 2.3 3 0 0 3 3 3 1 Helix-hairpin-helix domain DUF4332 PF14229.1 gi|284164453|ref|YP_003402732.1| - 0.017 15.1 0.0 0.046 13.6 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4332) DNA_pol_lambd_f PF10391.4 gi|284164453|ref|YP_003402732.1| - 0.086 12.4 0.0 0.19 11.3 0.0 1.5 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda Lipase_GDSL_3 PF14606.1 gi|284164454|ref|YP_003402733.1| - 2.4e-26 92.5 0.0 3.1e-26 92.1 0.0 1.1 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL_2 PF13472.1 gi|284164454|ref|YP_003402733.1| - 1.8e-12 47.7 0.1 2.6e-12 47.2 0.0 1.2 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family GxDLY PF14607.1 gi|284164454|ref|YP_003402733.1| - 0.039 13.4 0.0 0.057 12.8 0.0 1.2 1 0 0 1 1 1 0 N-terminus of Esterase_SGNH_hydro-type 3HCDH_N PF02737.13 gi|284164455|ref|YP_003402734.1| - 5e-58 195.7 0.3 6.2e-58 195.4 0.2 1.1 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.17 gi|284164455|ref|YP_003402734.1| - 4.4e-33 113.5 0.0 1.1e-32 112.2 0.0 1.7 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.10 gi|284164455|ref|YP_003402734.1| - 7.6e-05 22.6 0.5 0.0002 21.2 0.2 1.8 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|284164455|ref|YP_003402734.1| - 0.0014 19.0 0.2 0.0087 16.4 0.0 2.2 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|284164455|ref|YP_003402734.1| - 0.0072 16.0 0.0 0.016 14.9 0.0 1.6 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus UDPG_MGDP_dh_N PF03721.9 gi|284164455|ref|YP_003402734.1| - 0.0087 15.4 0.9 0.03 13.6 0.2 2.0 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|284164455|ref|YP_003402734.1| - 0.023 13.8 0.1 0.041 13.0 0.1 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain adh_short_C2 PF13561.1 gi|284164455|ref|YP_003402734.1| - 0.025 14.3 0.0 0.044 13.5 0.0 1.4 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase DAO PF01266.19 gi|284164455|ref|YP_003402734.1| - 0.062 12.1 0.7 0.099 11.5 0.5 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|284164455|ref|YP_003402734.1| - 0.14 12.2 0.2 0.37 10.8 0.1 1.7 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Aminotran_1_2 PF00155.16 gi|284164456|ref|YP_003402735.1| - 3.5e-64 217.0 0.0 3.9e-64 216.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|284164456|ref|YP_003402735.1| - 7e-10 38.1 0.0 8.9e-09 34.5 0.0 2.0 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|284164456|ref|YP_003402735.1| - 1.5e-07 30.8 0.0 2.1e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|284164456|ref|YP_003402735.1| - 4.3e-07 29.3 0.6 8e-07 28.4 0.4 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|284164456|ref|YP_003402735.1| - 8.9e-05 20.9 0.0 0.00014 20.2 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme AP_endonuc_2 PF01261.19 gi|284164456|ref|YP_003402735.1| - 0.036 13.3 0.2 5.3 6.2 0.0 3.1 3 0 0 3 3 3 0 Xylose isomerase-like TIM barrel CbiX PF01903.12 gi|284164456|ref|YP_003402735.1| - 0.11 12.6 0.5 0.45 10.6 0.0 2.2 2 0 0 2 2 2 0 CbiX SQS_PSY PF00494.14 gi|284164459|ref|YP_003402738.1| - 1.5e-51 175.2 2.8 1.8e-51 174.9 1.9 1.1 1 0 0 1 1 1 1 Squalene/phytoene synthase NAD_binding_10 PF13460.1 gi|284164460|ref|YP_003402739.1| - 1.1e-37 129.8 2.9 1.3e-37 129.6 2.0 1.0 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|284164460|ref|YP_003402739.1| - 8.7e-15 54.6 0.0 1.1e-14 54.2 0.0 1.1 1 0 0 1 1 1 1 NmrA-like family Epimerase PF01370.16 gi|284164460|ref|YP_003402739.1| - 2.2e-13 50.1 0.0 5.8e-12 45.5 0.0 2.1 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|284164460|ref|YP_003402739.1| - 3.1e-07 29.3 0.0 3.9e-07 29.0 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family KR PF08659.5 gi|284164460|ref|YP_003402739.1| - 2e-05 24.3 0.1 0.18 11.4 0.0 2.3 2 0 0 2 2 2 2 KR domain adh_short PF00106.20 gi|284164460|ref|YP_003402739.1| - 2.8e-05 24.1 2.2 0.043 13.7 1.0 2.3 1 1 1 2 2 2 2 short chain dehydrogenase DapB_N PF01113.15 gi|284164460|ref|YP_003402739.1| - 0.00067 19.5 0.5 0.001 18.9 0.3 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dh PF01118.19 gi|284164460|ref|YP_003402739.1| - 0.0011 19.2 0.2 0.0017 18.6 0.2 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain PAC2 PF09754.4 gi|284164460|ref|YP_003402739.1| - 0.0089 15.9 0.0 0.02 14.7 0.0 1.7 2 0 0 2 2 2 1 PAC2 family NAD_binding_4 PF07993.7 gi|284164460|ref|YP_003402739.1| - 0.0092 14.9 0.0 0.11 11.3 0.0 2.0 1 1 0 2 2 2 1 Male sterility protein RmlD_sub_bind PF04321.12 gi|284164460|ref|YP_003402739.1| - 0.011 14.6 0.1 0.026 13.4 0.1 1.6 2 0 0 2 2 2 0 RmlD substrate binding domain TrkA_N PF02254.13 gi|284164460|ref|YP_003402739.1| - 0.014 15.4 1.9 0.023 14.6 0.2 2.1 3 1 0 3 3 3 0 TrkA-N domain Polysacc_synt_2 PF02719.10 gi|284164460|ref|YP_003402739.1| - 0.067 12.0 0.0 0.77 8.5 0.0 2.0 2 0 0 2 2 2 0 Polysaccharide biosynthesis protein F420_oxidored PF03807.12 gi|284164460|ref|YP_003402739.1| - 0.11 12.9 0.1 0.2 12.0 0.1 1.4 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Acyl-CoA_dh_1 PF00441.19 gi|284164461|ref|YP_003402740.1| - 6.2e-49 165.9 0.9 9.2e-49 165.3 0.7 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|284164461|ref|YP_003402740.1| - 1.1e-34 119.3 0.1 2.8e-34 118.0 0.1 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|284164461|ref|YP_003402740.1| - 6.2e-23 81.5 0.5 9e-23 80.9 0.3 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|284164461|ref|YP_003402740.1| - 1.6e-18 65.9 0.4 9.4e-18 63.4 0.1 2.2 1 1 1 2 2 2 1 Acyl-CoA dehydrogenase, middle domain PadR PF03551.9 gi|284164463|ref|YP_003402742.1| - 3.3e-05 23.5 0.1 4.8e-05 23.0 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_20 PF12840.2 gi|284164463|ref|YP_003402742.1| - 0.0027 17.4 0.0 0.0038 17.0 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain DUF1495 PF07381.6 gi|284164463|ref|YP_003402742.1| - 0.033 13.8 0.0 2 8.1 0.0 2.6 1 1 1 2 2 2 0 Winged helix DNA-binding domain (DUF1495) OST-HTH PF12872.2 gi|284164463|ref|YP_003402742.1| - 0.044 13.6 0.0 0.059 13.2 0.0 1.2 1 0 0 1 1 1 0 OST-HTH/LOTUS domain HTH_45 PF14947.1 gi|284164463|ref|YP_003402742.1| - 0.059 13.1 0.0 0.078 12.8 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix TrmB PF01978.14 gi|284164463|ref|YP_003402742.1| - 0.11 12.2 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|284164463|ref|YP_003402742.1| - 0.13 12.2 0.0 0.27 11.2 0.0 1.7 1 1 0 1 1 1 0 Winged helix DNA-binding domain DUF3267 PF11667.3 gi|284164464|ref|YP_003402743.1| - 2.7e-18 66.1 0.1 5.3e-18 65.2 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3267) DUF2636 PF11120.3 gi|284164464|ref|YP_003402743.1| - 0.0053 16.2 1.0 0.018 14.5 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF2636) Hexokinase_2 PF03727.11 gi|284164465|ref|YP_003402744.1| - 0.0063 15.7 0.0 0.0071 15.5 0.0 1.0 1 0 0 1 1 1 1 Hexokinase zf-CHCC PF10276.4 gi|284164466|ref|YP_003402745.1| - 0.07 12.9 0.2 0.07 12.9 0.1 1.8 2 0 0 2 2 2 0 Zinc-finger domain PyrI_C PF02748.10 gi|284164466|ref|YP_003402745.1| - 0.076 12.4 0.0 0.1 12.0 0.0 1.2 1 0 0 1 1 1 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain zf-C2H2 PF00096.21 gi|284164466|ref|YP_003402745.1| - 0.11 12.9 0.4 0.18 12.2 0.2 1.5 1 0 0 1 1 1 0 Zinc finger, C2H2 type UbiA PF01040.13 gi|284164467|ref|YP_003402746.1| - 1.8e-27 96.1 27.3 1.8e-27 96.1 18.9 3.0 2 1 0 2 2 2 1 UbiA prenyltransferase family COX15-CtaA PF02628.10 gi|284164467|ref|YP_003402746.1| - 1.7e-15 56.6 20.4 1.7e-15 56.6 14.1 2.7 2 2 0 2 2 2 1 Cytochrome oxidase assembly protein DUF485 PF04341.7 gi|284164467|ref|YP_003402746.1| - 0.095 12.4 0.0 0.095 12.4 0.0 4.9 5 2 1 6 6 6 0 Protein of unknown function, DUF485 Aldo_ket_red PF00248.16 gi|284164468|ref|YP_003402747.1| - 1.1e-77 260.6 0.0 1.4e-77 260.3 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family PIN PF01850.16 gi|284164469|ref|YP_003402748.1| - 4.2e-12 46.4 0.1 4.7e-12 46.2 0.1 1.0 1 0 0 1 1 1 1 PIN domain Aldo_ket_red PF00248.16 gi|284164470|ref|YP_003402749.1| - 5.9e-57 192.6 0.0 6.7e-57 192.4 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family HTH_10 PF04967.7 gi|284164471|ref|YP_003402750.1| - 3.9e-12 45.5 0.0 6.2e-12 44.9 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_Tnp_ISL3 PF13542.1 gi|284164471|ref|YP_003402750.1| - 0.012 14.7 0.1 0.2 10.8 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 HTH_31 PF13560.1 gi|284164471|ref|YP_003402750.1| - 0.072 13.2 0.4 22 5.3 0.0 2.6 3 0 0 3 3 3 0 Helix-turn-helix domain Complex1_51K PF01512.12 gi|284164472|ref|YP_003402751.1| - 9.4e-19 67.6 0.0 1.6e-18 66.8 0.0 1.4 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit RnfC_N PF13375.1 gi|284164472|ref|YP_003402751.1| - 3.1e-09 36.4 0.1 5.7e-09 35.6 0.1 1.3 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain SLBB PF10531.4 gi|284164472|ref|YP_003402751.1| - 5.7e-05 22.9 0.0 0.00013 21.8 0.0 1.6 1 0 0 1 1 1 1 SLBB domain TrkA_N PF02254.13 gi|284164473|ref|YP_003402752.1| - 5.2e-40 136.0 11.2 7.4e-20 71.0 0.4 3.3 3 2 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.16 gi|284164473|ref|YP_003402752.1| - 2.4e-27 94.2 3.8 7.1e-14 51.1 0.1 3.0 3 0 0 3 3 3 2 TrkA-C domain Competence PF03772.11 gi|284164473|ref|YP_003402752.1| - 0.01 14.9 3.1 0.016 14.3 2.1 1.2 1 0 0 1 1 1 0 Competence protein AlaDh_PNT_C PF01262.16 gi|284164473|ref|YP_003402752.1| - 0.013 15.0 0.1 0.035 13.6 0.1 1.6 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Ion_trans_2 PF07885.11 gi|284164473|ref|YP_003402752.1| - 0.025 14.2 3.9 0.054 13.2 2.7 1.5 1 0 0 1 1 1 0 Ion channel XdhC_C PF13478.1 gi|284164473|ref|YP_003402752.1| - 0.027 14.7 0.3 3.6 7.9 0.0 2.4 2 0 0 2 2 2 0 XdhC Rossmann domain NAD_binding_7 PF13241.1 gi|284164473|ref|YP_003402752.1| - 0.47 10.7 4.3 0.81 9.9 0.7 3.0 2 2 0 2 2 2 0 Putative NAD(P)-binding Bac_luciferase PF00296.15 gi|284164474|ref|YP_003402753.1| - 1.6e-58 198.2 3.2 2.2e-58 197.8 2.2 1.2 1 0 0 1 1 1 1 Luciferase-like monooxygenase DUF4142 PF13628.1 gi|284164474|ref|YP_003402753.1| - 0.00024 21.1 0.4 0.00038 20.5 0.3 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4142) OPA3 PF07047.7 gi|284164474|ref|YP_003402753.1| - 0.092 12.5 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Optic atrophy 3 protein (OPA3) Acetyltransf_9 PF13527.1 gi|284164475|ref|YP_003402754.1| - 3.4e-16 59.2 0.0 3.2e-15 56.1 0.0 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|284164475|ref|YP_003402754.1| - 3.9e-06 26.9 0.0 0.017 15.2 0.0 2.2 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|284164475|ref|YP_003402754.1| - 0.0018 18.2 0.1 0.0072 16.3 0.0 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|284164475|ref|YP_003402754.1| - 0.01 15.9 0.0 0.13 12.4 0.0 2.3 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Metallophos_2 PF12850.2 gi|284164476|ref|YP_003402755.1| - 5.4e-13 49.0 0.3 8.8e-12 45.1 0.2 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain PBC PF03792.8 gi|284164476|ref|YP_003402755.1| - 0.00076 19.2 0.0 0.0012 18.5 0.0 1.2 1 0 0 1 1 1 1 PBC domain Metallophos PF00149.23 gi|284164476|ref|YP_003402755.1| - 0.001 18.5 1.5 0.027 13.8 0.9 2.6 2 1 0 2 2 2 1 Calcineurin-like phosphoesterase ABC_tran PF00005.22 gi|284164477|ref|YP_003402756.1| - 3.8e-28 98.5 0.0 7.3e-28 97.5 0.0 1.5 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.1 gi|284164477|ref|YP_003402756.1| - 2e-15 57.5 0.0 1.1e-08 35.3 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|284164477|ref|YP_003402756.1| - 0.00023 20.6 0.5 0.00053 19.4 0.4 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.1 gi|284164477|ref|YP_003402756.1| - 0.00025 20.6 0.7 0.011 15.3 0.1 2.3 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|284164477|ref|YP_003402756.1| - 0.0005 20.4 0.1 0.00075 19.8 0.1 1.1 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|284164477|ref|YP_003402756.1| - 0.00053 20.0 0.1 0.0014 18.6 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.1 gi|284164477|ref|YP_003402756.1| - 0.00082 18.5 0.0 0.26 10.2 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain AAA_28 PF13521.1 gi|284164477|ref|YP_003402756.1| - 0.0011 18.9 0.1 0.0028 17.6 0.0 1.7 1 1 0 1 1 1 1 AAA domain UPF0079 PF02367.12 gi|284164477|ref|YP_003402756.1| - 0.0019 17.7 0.1 0.0032 17.0 0.1 1.3 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 cobW PF02492.14 gi|284164477|ref|YP_003402756.1| - 0.0029 17.0 0.0 0.007 15.8 0.0 1.7 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain IstB_IS21 PF01695.12 gi|284164477|ref|YP_003402756.1| - 0.0043 16.4 0.1 0.55 9.6 0.1 2.3 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA PF00004.24 gi|284164477|ref|YP_003402756.1| - 0.011 15.9 0.1 0.035 14.3 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|284164477|ref|YP_003402756.1| - 0.011 16.5 0.2 0.027 15.2 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|284164477|ref|YP_003402756.1| - 0.014 15.2 0.0 0.075 12.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|284164477|ref|YP_003402756.1| - 0.02 15.0 0.0 0.041 14.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|284164477|ref|YP_003402756.1| - 0.021 14.0 0.1 0.034 13.3 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Mg_chelatase PF01078.16 gi|284164477|ref|YP_003402756.1| - 0.027 13.6 0.1 0.069 12.3 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Miro PF08477.8 gi|284164477|ref|YP_003402756.1| - 0.037 14.5 0.0 0.078 13.4 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein AAA_5 PF07728.9 gi|284164477|ref|YP_003402756.1| - 0.039 13.6 0.1 0.71 9.6 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) SMC_N PF02463.14 gi|284164477|ref|YP_003402756.1| - 0.039 13.1 0.0 0.22 10.7 0.1 1.9 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|284164477|ref|YP_003402756.1| - 0.056 12.8 0.0 0.25 10.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|284164477|ref|YP_003402756.1| - 0.062 13.2 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase PduV-EutP PF10662.4 gi|284164477|ref|YP_003402756.1| - 0.1 12.0 0.0 0.18 11.2 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation NACHT PF05729.7 gi|284164477|ref|YP_003402756.1| - 0.16 11.6 0.0 0.32 10.6 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_19 PF13245.1 gi|284164477|ref|YP_003402756.1| - 0.22 11.2 4.5 0.45 10.3 0.2 2.5 2 0 0 2 2 2 0 Part of AAA domain ABC2_membrane PF01061.19 gi|284164478|ref|YP_003402757.1| - 1.4e-26 92.9 7.7 1.4e-26 92.9 5.3 1.3 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|284164478|ref|YP_003402757.1| - 1.4e-16 60.4 0.7 1.4e-16 60.4 0.5 2.0 1 1 1 2 2 2 2 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|284164478|ref|YP_003402757.1| - 3.6e-08 32.6 6.7 6.8e-08 31.7 2.5 2.0 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|284164478|ref|YP_003402757.1| - 2.1e-07 30.3 5.3 3.3e-07 29.7 3.7 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein DUF2074 PF09847.4 gi|284164478|ref|YP_003402757.1| - 0.0008 18.2 0.6 0.0012 17.7 0.4 1.2 1 0 0 1 1 1 1 Predicted permease (DUF2074) OppC_N PF12911.2 gi|284164478|ref|YP_003402757.1| - 0.051 12.9 0.1 0.051 12.9 0.1 3.2 4 0 0 4 4 4 0 N-terminal TM domain of oligopeptide transport permease C DUF420 PF04238.7 gi|284164480|ref|YP_003402759.1| - 3.1e-40 137.2 10.8 3.1e-40 137.2 7.5 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF420) DUF1240 PF06836.7 gi|284164480|ref|YP_003402759.1| - 0.1 12.8 0.4 0.1 12.8 0.3 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF1240) DUF3413 PF11893.3 gi|284164480|ref|YP_003402759.1| - 0.16 10.8 4.3 0.7 8.7 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3413) Vma12 PF11712.3 gi|284164480|ref|YP_003402759.1| - 4 7.1 8.2 9.6 5.9 0.4 2.3 1 1 1 2 2 2 0 Endoplasmic reticulum-based factor for assembly of V-ATPase DUF2306 PF10067.4 gi|284164480|ref|YP_003402759.1| - 8.4 6.5 13.8 1.9 8.6 4.1 2.9 1 1 2 3 3 3 0 Predicted membrane protein (DUF2306) DnaJ PF00226.26 gi|284164481|ref|YP_003402760.1| - 1.4e-14 53.5 0.0 2.2e-14 52.9 0.0 1.3 1 0 0 1 1 1 1 DnaJ domain Poly_export PF02563.11 gi|284164482|ref|YP_003402761.1| - 0.059 13.1 0.0 1.2 8.9 0.0 2.5 1 1 0 1 1 1 0 Polysaccharide biosynthesis/export protein tRNA-synt_1 PF00133.17 gi|284164483|ref|YP_003402762.1| - 3.1e-62 210.4 0.0 2.5e-24 85.2 0.1 4.9 2 2 2 4 4 4 4 tRNA synthetases class I (I, L, M and V) tRNA-synt_1_2 PF13603.1 gi|284164483|ref|YP_003402762.1| - 7.2e-51 172.1 0.0 1.2e-46 158.3 0.0 2.3 2 0 0 2 2 2 2 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1g PF09334.6 gi|284164483|ref|YP_003402762.1| - 1.2e-31 109.7 0.0 1.2e-22 80.0 0.0 4.5 4 1 0 4 4 4 2 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|284164483|ref|YP_003402762.1| - 1.3e-15 57.4 0.0 2.2e-15 56.7 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1f PF01921.13 gi|284164483|ref|YP_003402762.1| - 0.0026 16.5 0.0 1.2 7.7 0.0 3.3 3 0 0 3 3 3 1 tRNA synthetases class I (K) tRNA-synt_1e PF01406.14 gi|284164483|ref|YP_003402762.1| - 0.021 13.9 0.0 2.1 7.4 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain IBR PF01485.16 gi|284164483|ref|YP_003402762.1| - 0.057 13.2 0.8 0.59 10.0 0.1 2.5 3 0 0 3 3 3 0 IBR domain DZR PF12773.2 gi|284164483|ref|YP_003402762.1| - 0.095 12.5 5.4 1 9.2 0.2 2.7 2 1 0 2 2 2 0 Double zinc ribbon tRNA-synt_1d PF00750.14 gi|284164483|ref|YP_003402762.1| - 0.27 9.9 0.0 0.97 8.1 0.0 1.7 2 0 0 2 2 2 0 tRNA synthetases class I (R) DNA_ligase_ZBD PF03119.11 gi|284164483|ref|YP_003402762.1| - 0.62 9.8 0.0 0.62 9.8 0.0 3.0 3 1 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.5 gi|284164483|ref|YP_003402762.1| - 5.4 7.0 9.6 3.3 7.7 0.1 3.2 3 0 0 3 3 3 0 Zinc ribbon domain DUF1510 PF07423.6 gi|284164484|ref|YP_003402763.1| - 0.03 13.7 0.5 0.045 13.1 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) Aldedh PF00171.17 gi|284164486|ref|YP_003402765.1| - 2e-140 468.1 0.0 2.5e-140 467.8 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|284164486|ref|YP_003402765.1| - 0.016 13.9 0.1 0.085 11.5 0.0 2.1 2 1 0 2 2 2 0 Acyl-CoA reductase (LuxC) SPOUT_MTase_2 PF14419.1 gi|284164486|ref|YP_003402765.1| - 0.071 12.2 0.0 0.23 10.6 0.0 1.7 2 0 0 2 2 2 0 AF2226-like SPOUT RNA Methylase fused to THUMP PgaD PF13994.1 gi|284164487|ref|YP_003402766.1| - 0.0097 15.3 0.1 0.22 11.0 0.0 2.0 2 0 0 2 2 2 1 PgaD-like protein VMA21 PF09446.5 gi|284164487|ref|YP_003402766.1| - 0.035 14.0 0.2 0.72 9.8 0.0 2.0 2 0 0 2 2 2 0 VMA21-like domain PMT_2 PF13231.1 gi|284164487|ref|YP_003402766.1| - 0.06 13.2 0.6 0.2 11.5 0.1 1.7 1 1 1 2 2 2 0 Dolichyl-phosphate-mannose-protein mannosyltransferase MadM PF03818.8 gi|284164487|ref|YP_003402766.1| - 0.086 12.4 0.8 5.3 6.6 0.2 2.1 2 0 0 2 2 2 0 Malonate/sodium symporter MadM subunit CDP-OH_P_tran_2 PF08009.6 gi|284164487|ref|YP_003402766.1| - 6.6 6.5 6.3 1.3 8.8 0.7 2.0 2 0 0 2 2 2 0 CDP-alcohol phosphatidyltransferase 2 NTP_transferase PF00483.18 gi|284164488|ref|YP_003402767.1| - 3.1e-37 128.2 0.0 7.1e-37 127.0 0.0 1.5 2 0 0 2 2 2 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|284164488|ref|YP_003402767.1| - 8.5e-16 58.4 0.0 1.3e-15 57.8 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|284164488|ref|YP_003402767.1| - 2.4e-11 42.6 7.0 0.0014 18.0 0.1 4.5 3 1 1 4 4 4 3 Bacterial transferase hexapeptide (six repeats) IspD PF01128.14 gi|284164488|ref|YP_003402767.1| - 0.00012 21.7 0.0 0.00019 21.0 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.14 gi|284164488|ref|YP_003402767.1| - 0.074 12.6 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 Cytidylyltransferase Hexapep_2 PF14602.1 gi|284164488|ref|YP_003402767.1| - 1.1 8.8 8.7 1.8 8.2 0.2 3.6 4 1 0 4 4 4 0 Hexapeptide repeat of succinyl-transferase PMT PF02366.13 gi|284164489|ref|YP_003402768.1| - 0.026 13.9 2.9 0.029 13.7 2.0 1.1 1 0 0 1 1 1 0 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF3429 PF11911.3 gi|284164489|ref|YP_003402768.1| - 0.062 13.2 5.5 0.071 13.0 3.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3429) VKOR PF07884.9 gi|284164489|ref|YP_003402768.1| - 0.25 11.1 2.3 0.31 10.8 1.6 1.2 1 0 0 1 1 1 0 Vitamin K epoxide reductase family O-antigen_lig PF13425.1 gi|284164489|ref|YP_003402768.1| - 0.66 9.9 6.2 0.82 9.6 4.3 1.1 1 0 0 1 1 1 0 O-antigen ligase like membrane protein DUF4131 PF13567.1 gi|284164489|ref|YP_003402768.1| - 2.7 7.3 8.6 4.8 6.5 6.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) DUF4350 PF14258.1 gi|284164490|ref|YP_003402769.1| - 1.7e-09 37.7 0.2 1.7e-09 37.7 0.2 2.8 3 1 1 4 4 4 1 Domain of unknown function (DUF4350) Glyco_hydro_42M PF08532.5 gi|284164490|ref|YP_003402769.1| - 0.05 12.7 0.0 0.093 11.8 0.0 1.5 1 0 0 1 1 1 0 Beta-galactosidase trimerisation domain DUF4159 PF13709.1 gi|284164490|ref|YP_003402769.1| - 0.076 12.1 0.2 0.16 11.0 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4159) AAA_3 PF07726.6 gi|284164491|ref|YP_003402770.1| - 7.2e-62 206.8 0.9 8.9e-62 206.5 0.1 1.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|284164491|ref|YP_003402770.1| - 1.4e-18 66.9 0.0 2.4e-18 66.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|284164491|ref|YP_003402770.1| - 4.2e-06 25.8 0.0 1.6e-05 23.9 0.0 1.8 2 0 0 2 2 2 1 MCM2/3/5 family Sigma54_activat PF00158.21 gi|284164491|ref|YP_003402770.1| - 1.7e-05 24.3 0.1 0.00013 21.4 0.0 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|284164491|ref|YP_003402770.1| - 3.2e-05 23.1 0.3 0.025 13.7 0.0 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RuvB_N PF05496.7 gi|284164491|ref|YP_003402770.1| - 0.00016 20.7 0.1 0.00073 18.6 0.1 2.0 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA PF00004.24 gi|284164491|ref|YP_003402770.1| - 0.00024 21.2 0.0 0.00046 20.3 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|284164491|ref|YP_003402770.1| - 0.014 16.1 0.0 0.029 15.1 0.0 2.0 1 1 0 1 1 1 0 AAA domain Subtilosin_A PF11420.3 gi|284164492|ref|YP_003402771.1| - 0.35 10.9 1.8 19 5.3 0.2 3.3 3 0 0 3 3 3 0 Bacteriocin subtilosin A DUF58 PF01882.13 gi|284164494|ref|YP_003402773.1| - 1.9e-22 79.2 0.2 5.1e-22 77.8 0.2 1.8 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF4129 PF13559.1 gi|284164495|ref|YP_003402774.1| - 6.1e-06 26.1 5.1 6.1e-06 26.1 3.5 3.6 3 1 1 4 4 4 1 Domain of unknown function (DUF4129) DUF4480 PF13715.1 gi|284164495|ref|YP_003402774.1| - 0.0019 18.1 0.6 0.52 10.3 0.0 2.7 2 0 0 2 2 2 2 Domain of unknown function (DUF4480) Imm41 PF15583.1 gi|284164495|ref|YP_003402774.1| - 0.21 11.4 2.8 0.42 10.4 1.9 1.5 1 0 0 1 1 1 0 Immunity protein 41 IncA PF04156.9 gi|284164495|ref|YP_003402774.1| - 1.2 8.6 10.5 3.2 7.2 7.3 1.7 1 0 0 1 1 1 0 IncA protein DUF3391 PF11871.3 gi|284164495|ref|YP_003402774.1| - 2.1 8.5 7.4 0.36 11.0 1.3 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF3391) V_ATPase_I PF01496.14 gi|284164495|ref|YP_003402774.1| - 2.4 5.9 2.7 3.3 5.4 1.9 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family HTH_24 PF13412.1 gi|284164496|ref|YP_003402775.1| - 1.4e-10 40.3 0.1 1.8e-07 30.4 0.0 2.6 3 0 0 3 3 3 2 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|284164496|ref|YP_003402775.1| - 1.5e-08 34.1 0.0 5.1e-08 32.4 0.0 1.9 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|284164496|ref|YP_003402775.1| - 3.1e-07 29.9 0.0 7.5e-07 28.7 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.1 gi|284164496|ref|YP_003402775.1| - 4.7e-07 29.2 0.4 0.00071 19.0 0.0 3.2 3 0 0 3 3 3 2 AsnC-type helix-turn-helix domain Sigma70_r4 PF04545.11 gi|284164496|ref|YP_003402775.1| - 2.8e-06 26.5 0.1 1e-05 24.7 0.0 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_23 PF13384.1 gi|284164496|ref|YP_003402775.1| - 0.00024 20.6 0.0 0.63 9.7 0.0 2.8 3 0 0 3 3 3 2 Homeodomain-like domain Fe_dep_repress PF01325.14 gi|284164496|ref|YP_003402775.1| - 0.0039 17.0 0.0 0.0084 16.0 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.7 gi|284164496|ref|YP_003402775.1| - 0.0055 16.3 0.1 0.017 14.7 0.0 1.8 2 0 0 2 2 2 1 HTH domain HTH_10 PF04967.7 gi|284164496|ref|YP_003402775.1| - 0.0065 16.0 0.6 0.063 12.8 0.1 2.7 2 1 0 2 2 2 1 HTH DNA binding domain HTH_3 PF01381.17 gi|284164496|ref|YP_003402775.1| - 0.0079 16.0 0.1 0.038 13.8 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix HTH_27 PF13463.1 gi|284164496|ref|YP_003402775.1| - 0.0079 16.4 0.1 0.033 14.5 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_31 PF13560.1 gi|284164496|ref|YP_003402775.1| - 0.041 14.0 6.7 0.055 13.6 0.0 3.0 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_1 PF00126.22 gi|284164496|ref|YP_003402775.1| - 0.047 13.4 0.0 0.13 11.9 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_30 PF13556.1 gi|284164496|ref|YP_003402775.1| - 0.049 13.2 0.0 0.1 12.2 0.0 1.6 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_IclR PF09339.5 gi|284164496|ref|YP_003402775.1| - 0.09 12.3 2.9 0.65 9.6 0.0 2.9 3 0 0 3 3 3 0 IclR helix-turn-helix domain Phage_CI_repr PF07022.8 gi|284164496|ref|YP_003402775.1| - 0.12 12.4 0.0 0.39 10.8 0.0 1.9 2 0 0 2 2 1 0 Bacteriophage CI repressor helix-turn-helix domain HTH_38 PF13936.1 gi|284164496|ref|YP_003402775.1| - 0.16 11.5 1.3 0.49 10.0 0.1 2.3 3 0 0 3 3 3 0 Helix-turn-helix domain UPF0122 PF04297.9 gi|284164496|ref|YP_003402775.1| - 0.17 11.9 0.0 0.34 10.9 0.0 1.4 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like DUF1616 PF07760.6 gi|284164497|ref|YP_003402776.1| - 4.1e-92 308.3 0.0 4.7e-92 308.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) MacB_PCD PF12704.2 gi|284164498|ref|YP_003402777.1| - 1.8e-25 89.8 0.1 1.8e-25 89.8 0.1 2.0 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|284164498|ref|YP_003402777.1| - 5e-15 55.3 14.0 1e-14 54.3 7.2 2.1 2 0 0 2 2 2 1 FtsX-like permease family Glycophorin_A PF01102.13 gi|284164498|ref|YP_003402777.1| - 0.011 15.4 1.7 0.052 13.3 0.1 2.4 2 1 0 2 2 2 0 Glycophorin A DUF4064 PF13273.1 gi|284164498|ref|YP_003402777.1| - 0.41 10.7 5.0 17 5.5 0.0 3.5 3 1 0 3 3 3 0 Protein of unknown function (DUF4064) YjgP_YjgQ PF03739.9 gi|284164498|ref|YP_003402777.1| - 4.3 5.9 6.1 1.9 7.1 2.3 1.8 2 0 0 2 2 2 0 Predicted permease YjgP/YjgQ family MacB_PCD PF12704.2 gi|284164499|ref|YP_003402778.1| - 2e-09 37.3 1.0 2e-09 37.3 0.7 3.0 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|284164499|ref|YP_003402778.1| - 4.2e-08 32.9 7.2 4.2e-08 32.9 5.0 2.0 2 0 0 2 2 2 1 FtsX-like permease family Neurensin PF14927.1 gi|284164499|ref|YP_003402778.1| - 0.23 10.8 2.0 1.5 8.1 0.0 2.3 2 0 0 2 2 2 0 Neurensin ABC_tran PF00005.22 gi|284164500|ref|YP_003402779.1| - 5.2e-36 123.9 0.0 6.8e-36 123.5 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284164500|ref|YP_003402779.1| - 2.6e-08 34.1 0.0 0.0025 17.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|284164500|ref|YP_003402779.1| - 2.3e-06 27.2 3.7 0.0027 17.4 0.0 3.2 3 1 0 3 3 3 2 Part of AAA domain AAA_29 PF13555.1 gi|284164500|ref|YP_003402779.1| - 9.3e-05 21.8 0.1 0.00017 21.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.1 gi|284164500|ref|YP_003402779.1| - 0.00059 19.4 0.1 0.018 14.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|284164500|ref|YP_003402779.1| - 0.001 18.3 0.1 0.031 13.5 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|284164500|ref|YP_003402779.1| - 0.0048 16.8 4.0 0.026 14.5 2.8 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.1 gi|284164500|ref|YP_003402779.1| - 0.015 15.6 0.0 0.21 11.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|284164500|ref|YP_003402779.1| - 0.024 14.0 0.3 0.084 12.2 0.0 1.9 2 1 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|284164500|ref|YP_003402779.1| - 0.026 13.7 0.0 0.04 13.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|284164500|ref|YP_003402779.1| - 0.032 14.1 0.4 0.091 12.6 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|284164500|ref|YP_003402779.1| - 0.037 14.8 3.3 0.042 14.6 1.4 2.0 2 1 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|284164500|ref|YP_003402779.1| - 0.039 13.6 0.0 0.099 12.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.7 gi|284164500|ref|YP_003402779.1| - 0.072 12.1 0.0 0.13 11.3 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin NTPase_1 PF03266.10 gi|284164500|ref|YP_003402779.1| - 0.08 12.6 0.2 2.1 8.0 0.0 2.2 2 0 0 2 2 2 0 NTPase AAA_22 PF13401.1 gi|284164500|ref|YP_003402779.1| - 0.09 12.9 0.0 0.35 11.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|284164500|ref|YP_003402779.1| - 0.14 12.4 0.0 0.2 11.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|284164500|ref|YP_003402779.1| - 0.14 12.0 0.7 1.9 8.4 0.5 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Rad17 PF03215.10 gi|284164500|ref|YP_003402779.1| - 0.22 10.1 0.0 0.29 9.7 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein DUF1129 PF06570.6 gi|284164501|ref|YP_003402780.1| - 0.0034 16.7 1.1 0.0054 16.0 0.4 1.7 1 1 1 2 2 2 1 Protein of unknown function (DUF1129) DUF4117 PF13491.1 gi|284164501|ref|YP_003402780.1| - 0.22 10.9 18.7 0.017 14.6 3.5 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4117) DUF3464 PF11947.3 gi|284164501|ref|YP_003402780.1| - 5.4 6.4 8.1 9.5 5.6 1.5 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF3464) TrmB PF01978.14 gi|284164502|ref|YP_003402781.1| - 2.4e-05 23.9 0.0 2.8e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Sulfolobus_pRN PF05584.6 gi|284164502|ref|YP_003402781.1| - 0.067 13.1 0.0 0.083 12.8 0.0 1.2 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein TFIIE_alpha PF02002.12 gi|284164502|ref|YP_003402781.1| - 0.095 12.2 0.0 0.11 12.0 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit WbqC PF08889.6 gi|284164503|ref|YP_003402782.1| - 3.7e-77 258.6 0.0 4.3e-77 258.4 0.0 1.0 1 0 0 1 1 1 1 WbqC-like protein family EDR1 PF14381.1 gi|284164503|ref|YP_003402782.1| - 0.15 11.5 0.1 0.25 10.8 0.0 1.3 1 0 0 1 1 1 0 Ethylene-responsive protein kinase Le-CTR1 Polysacc_deac_1 PF01522.16 gi|284164504|ref|YP_003402783.1| - 0.022 14.4 0.0 0.039 13.5 0.0 1.4 1 0 0 1 1 1 0 Polysaccharide deacetylase RHS_repeat PF05593.9 gi|284164505|ref|YP_003402784.1| - 0.012 15.7 0.3 0.02 15.0 0.2 1.4 1 0 0 1 1 1 0 RHS Repeat Epimerase PF01370.16 gi|284164507|ref|YP_003402786.1| - 6.5e-44 150.1 0.2 7.8e-44 149.8 0.2 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|284164507|ref|YP_003402786.1| - 8.3e-14 51.1 0.0 1.1e-13 50.7 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|284164507|ref|YP_003402786.1| - 2e-11 43.1 0.1 4.8e-11 41.8 0.1 1.6 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|284164507|ref|YP_003402786.1| - 1.1e-09 37.6 0.2 8.2e-08 31.4 0.2 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|284164507|ref|YP_003402786.1| - 1.5e-09 37.1 0.0 7.9e-07 28.2 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.1 gi|284164507|ref|YP_003402786.1| - 4.1e-06 26.9 0.0 5.1e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|284164507|ref|YP_003402786.1| - 5.4e-06 26.4 0.3 0.0015 18.4 0.2 2.5 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|284164507|ref|YP_003402786.1| - 0.0072 16.0 0.1 0.35 10.5 0.0 2.2 2 0 0 2 2 2 1 KR domain 2OG-FeII_Oxy_4 PF13661.1 gi|284164507|ref|YP_003402786.1| - 0.0086 15.6 0.0 0.021 14.4 0.0 1.6 1 0 0 1 1 1 1 2OG-Fe(II) oxygenase superfamily Epimerase_Csub PF13950.1 gi|284164507|ref|YP_003402786.1| - 0.15 12.0 0.0 0.34 10.8 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose 4-epimerase C-term subunit NTP_transferase PF00483.18 gi|284164508|ref|YP_003402787.1| - 1e-36 126.4 0.0 1.3e-36 126.1 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|284164508|ref|YP_003402787.1| - 4.7e-16 59.2 0.6 7.2e-16 58.6 0.1 1.6 2 0 0 2 2 2 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|284164508|ref|YP_003402787.1| - 2.2e-09 36.3 17.4 1.3e-05 24.4 0.8 5.3 3 1 3 6 6 6 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|284164508|ref|YP_003402787.1| - 7.1 6.2 19.6 0.091 12.3 1.2 4.2 3 2 0 3 3 3 0 Hexapeptide repeat of succinyl-transferase SIS PF01380.17 gi|284164509|ref|YP_003402788.1| - 1.8e-47 160.2 0.1 7.3e-23 80.6 0.1 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|284164509|ref|YP_003402788.1| - 5.1e-25 87.9 0.6 1.3e-24 86.7 0.1 1.8 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|284164509|ref|YP_003402788.1| - 1.4e-21 76.5 0.0 2.7e-21 75.5 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|284164509|ref|YP_003402788.1| - 3.2e-21 75.4 0.2 2.2e-16 59.5 0.0 2.7 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_4 PF13230.1 gi|284164509|ref|YP_003402788.1| - 2e-05 23.4 0.0 3.4e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Epimerase PF01370.16 gi|284164510|ref|YP_003402789.1| - 3.3e-58 196.9 0.6 4.2e-58 196.5 0.5 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|284164510|ref|YP_003402789.1| - 1.9e-22 79.2 0.1 2.4e-22 78.9 0.1 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|284164510|ref|YP_003402789.1| - 3.9e-19 68.6 3.1 5e-19 68.2 2.2 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|284164510|ref|YP_003402789.1| - 2.3e-17 62.8 0.1 2e-16 59.7 0.1 2.3 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|284164510|ref|YP_003402789.1| - 6.9e-14 51.3 0.4 1.1e-11 44.1 0.3 2.1 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|284164510|ref|YP_003402789.1| - 1.4e-11 44.7 3.9 2.1e-11 44.1 2.7 1.3 1 1 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|284164510|ref|YP_003402789.1| - 1.8e-07 31.2 4.4 4.1e-07 30.0 3.1 1.6 1 0 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.8 gi|284164510|ref|YP_003402789.1| - 6.6e-05 22.2 0.4 0.00013 21.3 0.3 1.7 1 1 0 1 1 1 1 NmrA-like family KR PF08659.5 gi|284164510|ref|YP_003402789.1| - 0.0014 18.3 2.0 0.01 15.5 1.4 2.3 1 1 0 1 1 1 1 KR domain Semialdhyde_dh PF01118.19 gi|284164510|ref|YP_003402789.1| - 0.0023 18.1 0.5 0.0087 16.3 0.3 2.1 2 1 0 2 2 1 1 Semialdehyde dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|284164510|ref|YP_003402789.1| - 0.0044 16.0 0.9 0.0066 15.4 0.6 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase Epimerase_Csub PF13950.1 gi|284164510|ref|YP_003402789.1| - 0.014 15.3 0.1 0.032 14.1 0.0 1.7 1 0 0 1 1 1 0 UDP-glucose 4-epimerase C-term subunit THF_DHG_CYH_C PF02882.14 gi|284164510|ref|YP_003402789.1| - 0.021 13.9 0.1 0.07 12.2 0.0 1.9 1 1 1 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DapB_N PF01113.15 gi|284164510|ref|YP_003402789.1| - 0.028 14.3 0.2 0.21 11.5 0.2 2.3 2 1 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus TrkA_N PF02254.13 gi|284164510|ref|YP_003402789.1| - 0.07 13.1 3.4 0.086 12.8 1.2 2.0 2 1 0 2 2 2 0 TrkA-N domain Epimerase PF01370.16 gi|284164512|ref|YP_003402791.1| - 3.6e-20 72.4 0.0 6.3e-20 71.6 0.0 1.3 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|284164512|ref|YP_003402791.1| - 4.3e-06 25.8 0.0 0.015 14.2 0.0 2.9 2 1 0 2 2 2 2 RmlD substrate binding domain adh_short PF00106.20 gi|284164512|ref|YP_003402791.1| - 0.0033 17.3 0.1 0.0075 16.1 0.1 1.6 1 1 0 1 1 1 1 short chain dehydrogenase Polysacc_synt_2 PF02719.10 gi|284164512|ref|YP_003402791.1| - 0.0044 15.9 0.0 0.016 14.1 0.0 1.9 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Epimerase PF01370.16 gi|284164513|ref|YP_003402792.1| - 3.2e-51 174.0 0.1 3.7e-51 173.8 0.1 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|284164513|ref|YP_003402792.1| - 5.9e-30 103.9 0.0 8.1e-30 103.4 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|284164513|ref|YP_003402792.1| - 5.3e-17 61.6 0.0 6.7e-17 61.2 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|284164513|ref|YP_003402792.1| - 2.8e-14 52.6 0.6 2e-12 46.5 0.4 2.1 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|284164513|ref|YP_003402792.1| - 1.2e-13 51.4 0.1 1.6e-13 51.0 0.1 1.2 1 0 0 1 1 1 1 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|284164513|ref|YP_003402792.1| - 1e-12 47.5 0.0 3.7e-12 45.7 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein adh_short PF00106.20 gi|284164513|ref|YP_003402792.1| - 4.7e-09 36.3 0.3 9.6e-09 35.3 0.2 1.4 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|284164513|ref|YP_003402792.1| - 1.7e-05 24.5 0.2 4.1e-05 23.3 0.1 1.6 1 1 0 1 1 1 1 KR domain NmrA PF05368.8 gi|284164513|ref|YP_003402792.1| - 3.9e-05 23.0 0.0 7.2e-05 22.1 0.0 1.5 1 1 0 1 1 1 1 NmrA-like family Saccharop_dh PF03435.13 gi|284164513|ref|YP_003402792.1| - 0.00033 19.7 0.1 0.00049 19.1 0.1 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase Ldh_1_N PF00056.18 gi|284164513|ref|YP_003402792.1| - 0.0074 16.1 0.1 0.012 15.4 0.1 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|284164513|ref|YP_003402792.1| - 0.07 13.4 0.2 0.52 10.6 0.0 2.1 1 1 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain PAC2 PF09754.4 gi|284164513|ref|YP_003402792.1| - 0.13 12.1 0.1 13 5.5 0.0 2.4 1 1 0 2 2 2 0 PAC2 family Epimerase PF01370.16 gi|284164514|ref|YP_003402793.1| - 1.9e-38 132.2 0.0 2.4e-38 131.9 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|284164514|ref|YP_003402793.1| - 7.1e-27 94.0 0.2 9.6e-27 93.6 0.1 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|284164514|ref|YP_003402793.1| - 1.2e-22 79.9 0.0 2.5e-22 78.9 0.0 1.5 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|284164514|ref|YP_003402793.1| - 1.8e-13 50.0 0.0 2e-09 36.7 0.0 2.2 1 1 1 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.1 gi|284164514|ref|YP_003402793.1| - 2.2e-12 47.3 0.7 7.5e-12 45.6 0.1 2.1 2 1 0 2 2 2 1 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|284164514|ref|YP_003402793.1| - 2.2e-12 46.4 0.0 1.3e-11 43.9 0.0 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein Saccharop_dh PF03435.13 gi|284164514|ref|YP_003402793.1| - 2.4e-05 23.4 0.2 4e-05 22.7 0.1 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase adh_short PF00106.20 gi|284164514|ref|YP_003402793.1| - 0.00022 21.1 0.3 0.00051 20.0 0.2 1.6 1 0 0 1 1 1 1 short chain dehydrogenase Semialdhyde_dh PF01118.19 gi|284164514|ref|YP_003402793.1| - 0.0027 17.9 0.3 0.0077 16.5 0.0 1.8 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain NmrA PF05368.8 gi|284164514|ref|YP_003402793.1| - 0.0035 16.6 0.3 0.034 13.3 0.0 2.1 2 0 0 2 2 2 1 NmrA-like family DapB_N PF01113.15 gi|284164514|ref|YP_003402793.1| - 0.0049 16.7 0.8 0.016 15.1 0.1 2.1 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Ldh_1_N PF00056.18 gi|284164514|ref|YP_003402793.1| - 0.014 15.2 0.2 0.039 13.7 0.1 1.7 2 0 0 2 2 2 0 lactate/malate dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|284164514|ref|YP_003402793.1| - 0.018 15.0 0.2 0.04 13.9 0.1 1.6 1 0 0 1 1 1 0 TrkA-N domain Glycos_transf_2 PF00535.21 gi|284164515|ref|YP_003402794.1| - 1.1e-21 77.1 0.0 1.6e-21 76.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|284164515|ref|YP_003402794.1| - 1.6e-06 28.1 0.0 2.6e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 DUF2304 PF10066.4 gi|284164515|ref|YP_003402794.1| - 4.1e-05 23.4 0.5 7.2e-05 22.6 0.4 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2304) Glyco_transf_21 PF13506.1 gi|284164515|ref|YP_003402794.1| - 0.048 12.9 0.0 0.079 12.2 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 21 PGM_PMM_II PF02879.11 gi|284164515|ref|YP_003402794.1| - 0.095 13.0 0.0 0.18 12.1 0.0 1.5 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Glycos_transf_1 PF00534.15 gi|284164516|ref|YP_003402795.1| - 1.9e-36 125.0 0.0 6.9e-36 123.2 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|284164516|ref|YP_003402795.1| - 2.7e-17 63.1 0.1 3.8e-16 59.4 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|284164516|ref|YP_003402795.1| - 1e-11 45.2 0.3 1.3e-10 41.6 0.0 2.3 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|284164516|ref|YP_003402795.1| - 2.3e-06 27.4 0.0 1.3e-05 25.0 0.0 2.2 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|284164516|ref|YP_003402795.1| - 3.7e-05 23.9 0.0 8.2e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_20 PF00982.16 gi|284164516|ref|YP_003402795.1| - 0.00019 20.0 0.0 0.028 12.8 0.0 2.2 1 1 1 2 2 2 2 Glycosyltransferase family 20 VWA_3 PF13768.1 gi|284164516|ref|YP_003402795.1| - 0.013 15.1 0.0 0.068 12.8 0.0 2.1 3 0 0 3 3 3 0 von Willebrand factor type A domain UPF0104 PF03706.8 gi|284164517|ref|YP_003402796.1| - 5.4e-19 68.5 31.1 6.6e-19 68.2 21.5 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) CD52 PF15116.1 gi|284164517|ref|YP_003402796.1| - 0.065 13.0 0.0 0.17 11.7 0.0 1.7 1 0 0 1 1 1 0 CAMPATH-1 antigen Acetyltransf_3 PF13302.1 gi|284164519|ref|YP_003402798.1| - 3.1e-23 82.5 0.1 4.1e-23 82.1 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|284164519|ref|YP_003402798.1| - 7.5e-05 22.6 0.1 0.00013 21.9 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family DUF457 PF04307.9 gi|284164520|ref|YP_003402799.1| - 4.8e-15 55.2 6.5 5.5e-15 55.0 4.5 1.0 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Zn_dep_PLPC PF00882.13 gi|284164520|ref|YP_003402799.1| - 0.0023 17.6 0.0 0.0036 16.9 0.0 1.3 1 0 0 1 1 1 1 Zinc dependent phospholipase C DUF457 PF04307.9 gi|284164523|ref|YP_003402802.1| - 4e-11 42.4 9.2 5.1e-11 42.1 6.4 1.3 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) OrfB_Zn_ribbon PF07282.6 gi|284164524|ref|YP_003402803.1| - 1e-18 66.7 0.4 1.7e-18 66.0 0.3 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|284164524|ref|YP_003402803.1| - 8.6e-06 25.3 0.0 1.4e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Probable transposase HTH_24 PF13412.1 gi|284164526|ref|YP_003402805.1| - 0.002 17.5 0.0 0.06 12.7 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|284164526|ref|YP_003402805.1| - 0.002 17.7 0.0 0.0023 17.5 0.0 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|284164526|ref|YP_003402805.1| - 0.012 15.2 0.0 0.023 14.3 0.0 1.4 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|284164526|ref|YP_003402805.1| - 0.033 14.5 0.0 0.043 14.1 0.0 1.3 1 1 0 1 1 1 0 Winged helix DNA-binding domain DUF4095 PF13338.1 gi|284164526|ref|YP_003402805.1| - 0.055 13.6 0.0 0.069 13.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4095) Mrr_N PF14338.1 gi|284164526|ref|YP_003402805.1| - 0.077 13.0 0.0 0.17 12.0 0.0 1.6 2 0 0 2 2 2 0 Mrr N-terminal domain HTH_5 PF01022.15 gi|284164526|ref|YP_003402805.1| - 0.089 12.4 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Terminase_6 PF03237.10 gi|284164527|ref|YP_003402806.1| - 7.7e-14 51.2 0.0 4.1e-12 45.5 0.0 2.2 1 1 0 1 1 1 1 Terminase-like family Terminase_3 PF04466.8 gi|284164527|ref|YP_003402806.1| - 0.0024 17.0 0.0 0.35 9.8 0.0 2.8 2 1 0 2 2 2 2 Phage terminase large subunit Cdc6_C PF09079.6 gi|284164529|ref|YP_003402808.1| - 0.0057 16.3 0.1 0.018 14.7 0.0 1.9 1 1 0 1 1 1 1 CDC6, C terminal DiS_P_DiS PF06750.8 gi|284164530|ref|YP_003402809.1| - 0.078 12.7 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial Peptidase A24 N-terminal domain zinc-ribbons_6 PF07191.7 gi|284164530|ref|YP_003402809.1| - 0.34 10.7 3.6 0.53 10.0 2.5 1.3 1 0 0 1 1 1 0 zinc-ribbons Response_reg PF00072.19 gi|284164531|ref|YP_003402810.1| - 4.4e-15 55.6 0.0 5e-15 55.4 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain Herpes_UL51 PF04540.8 gi|284164532|ref|YP_003402811.1| - 0.028 13.9 0.1 0.031 13.8 0.1 1.1 1 0 0 1 1 1 0 Herpesvirus UL51 protein gpW PF02831.10 gi|284164532|ref|YP_003402811.1| - 0.04 13.4 0.1 0.12 11.9 0.0 1.7 2 0 0 2 2 2 0 gpW RDM PF11002.3 gi|284164532|ref|YP_003402811.1| - 0.042 13.5 0.0 0.054 13.1 0.0 1.2 1 0 0 1 1 1 0 RFPL defining motif (RDM) HTH_10 PF04967.7 gi|284164533|ref|YP_003402812.1| - 5e-16 58.0 0.3 1.1e-15 56.9 0.2 1.6 1 0 0 1 1 1 1 HTH DNA binding domain HTH_3 PF01381.17 gi|284164533|ref|YP_003402812.1| - 0.0084 15.9 0.1 0.031 14.1 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix MarR_2 PF12802.2 gi|284164533|ref|YP_003402812.1| - 0.0096 15.5 0.1 0.035 13.7 0.0 2.0 1 1 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|284164533|ref|YP_003402812.1| - 0.023 14.0 0.0 0.071 12.5 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|284164533|ref|YP_003402812.1| - 0.085 12.4 1.4 0.3 10.6 0.1 2.5 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain Glyoxalase_2 PF12681.2 gi|284164535|ref|YP_003402814.1| - 7.5e-17 61.9 0.1 1e-16 61.4 0.1 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|284164535|ref|YP_003402814.1| - 9e-17 61.2 0.2 1.2e-16 60.8 0.2 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|284164535|ref|YP_003402814.1| - 4.3e-13 49.2 0.2 5.1e-13 48.9 0.1 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|284164535|ref|YP_003402814.1| - 3.8e-06 26.9 0.2 1.2e-05 25.2 0.1 1.7 1 1 0 1 1 1 1 Glyoxalase-like domain Fucose_iso_C PF02952.12 gi|284164535|ref|YP_003402814.1| - 0.0029 17.1 0.1 2 7.9 0.0 2.1 2 0 0 2 2 2 2 L-fucose isomerase, C-terminal domain PqqD PF05402.7 gi|284164537|ref|YP_003402816.1| - 0.002 18.0 0.6 0.0082 16.1 0.1 2.1 2 0 0 2 2 2 1 Coenzyme PQQ synthesis protein D (PqqD) HTH_DeoR PF08220.7 gi|284164537|ref|YP_003402816.1| - 0.0037 16.7 0.0 0.0075 15.7 0.0 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain 3-PAP PF12578.3 gi|284164537|ref|YP_003402816.1| - 0.069 13.0 0.1 0.19 11.5 0.0 1.7 1 1 1 2 2 2 0 Myotubularin-associated protein HTH_Tnp_ISL3 PF13542.1 gi|284164537|ref|YP_003402816.1| - 0.071 12.3 0.3 0.43 9.8 0.2 2.2 1 1 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 AAA_22 PF13401.1 gi|284164538|ref|YP_003402817.1| - 3.1e-09 37.0 0.0 6e-09 36.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|284164538|ref|YP_003402817.1| - 6.7e-08 32.7 0.2 6.1e-06 26.3 0.0 2.9 2 2 1 3 3 3 1 AAA ATPase domain AAA PF00004.24 gi|284164538|ref|YP_003402817.1| - 5.8e-07 29.7 0.0 1.2e-06 28.7 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Cdc6_C PF09079.6 gi|284164538|ref|YP_003402817.1| - 3.3e-06 26.7 0.0 8.2e-06 25.4 0.0 1.7 1 0 0 1 1 1 1 CDC6, C terminal NACHT PF05729.7 gi|284164538|ref|YP_003402817.1| - 1.9e-05 24.3 0.0 3.7e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 NACHT domain AAA_17 PF13207.1 gi|284164538|ref|YP_003402817.1| - 0.00065 20.5 0.2 0.0024 18.7 0.0 2.1 1 1 1 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|284164538|ref|YP_003402817.1| - 0.00068 19.3 0.0 0.0022 17.6 0.0 1.9 2 0 0 2 2 1 1 Part of AAA domain Sigma54_activat PF00158.21 gi|284164538|ref|YP_003402817.1| - 0.0026 17.2 0.0 0.0044 16.5 0.0 1.3 1 0 0 1 1 1 1 Sigma-54 interaction domain RNA_helicase PF00910.17 gi|284164538|ref|YP_003402817.1| - 0.0043 17.1 0.0 0.023 14.8 0.0 2.0 2 0 0 2 2 2 1 RNA helicase ResIII PF04851.10 gi|284164538|ref|YP_003402817.1| - 0.0061 16.4 0.0 0.012 15.4 0.0 1.5 2 0 0 2 2 1 1 Type III restriction enzyme, res subunit AAA_5 PF07728.9 gi|284164538|ref|YP_003402817.1| - 0.0074 16.0 0.0 0.021 14.5 0.0 1.8 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|284164538|ref|YP_003402817.1| - 0.017 15.0 0.0 0.059 13.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|284164538|ref|YP_003402817.1| - 0.025 13.7 0.0 0.044 12.9 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_11 PF13086.1 gi|284164538|ref|YP_003402817.1| - 0.028 13.9 0.0 0.038 13.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|284164538|ref|YP_003402817.1| - 0.038 13.3 0.0 0.29 10.5 0.0 2.4 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|284164538|ref|YP_003402817.1| - 0.047 13.1 0.0 0.56 9.5 0.0 2.4 2 0 0 2 2 2 0 IstB-like ATP binding protein DUF2075 PF09848.4 gi|284164538|ref|YP_003402817.1| - 0.051 12.5 0.0 0.076 11.9 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_10 PF12846.2 gi|284164538|ref|YP_003402817.1| - 0.053 12.9 0.0 0.48 9.8 0.0 2.4 3 0 0 3 3 3 0 AAA-like domain AAA_18 PF13238.1 gi|284164538|ref|YP_003402817.1| - 0.069 13.4 0.0 0.13 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|284164538|ref|YP_003402817.1| - 0.11 12.0 0.0 0.23 11.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain CCD PF07860.6 gi|284164539|ref|YP_003402818.1| - 0.027 13.9 0.1 0.027 13.9 0.0 1.1 1 0 0 1 1 1 0 WisP family C-Terminal Region LZ_Tnp_IS66 PF13007.2 gi|284164539|ref|YP_003402818.1| - 1.5 9.4 7.9 1.6 9.4 5.0 1.4 1 1 0 1 1 1 0 Transposase C of IS166 homeodomain DUF77 PF01910.12 gi|284164541|ref|YP_003402820.1| - 9.9e-20 70.0 0.3 1.1e-19 69.8 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF77 Ykof PF07615.6 gi|284164541|ref|YP_003402820.1| - 0.13 12.3 0.1 0.2 11.8 0.0 1.3 1 1 0 1 1 1 0 YKOF-related Family CARDB PF07705.6 gi|284164542|ref|YP_003402821.1| - 3.8e-09 36.4 5.0 0.0011 18.9 0.1 3.8 4 0 0 4 4 4 2 CARDB DUF1573 PF07610.6 gi|284164542|ref|YP_003402821.1| - 0.0012 18.4 10.3 0.6 9.7 0.2 5.1 5 1 0 5 5 5 2 Protein of unknown function (DUF1573) Transglut_C PF00927.17 gi|284164542|ref|YP_003402821.1| - 0.0022 18.0 0.0 0.66 10.0 0.0 3.5 3 1 0 3 3 3 1 Transglutaminase family, C-terminal ig like domain NPCBM_assoc PF10633.4 gi|284164542|ref|YP_003402821.1| - 0.0028 17.6 8.2 0.41 10.7 0.3 3.7 3 0 0 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.13 gi|284164542|ref|YP_003402821.1| - 0.072 13.1 6.4 0.17 11.9 0.3 3.4 2 0 0 2 2 2 0 Domain of unknown function DUF11 Filamin PF00630.14 gi|284164542|ref|YP_003402821.1| - 0.095 13.2 0.0 4.4 7.9 0.0 3.2 3 1 0 3 3 3 0 Filamin/ABP280 repeat DUF1616 PF07760.6 gi|284164542|ref|YP_003402821.1| - 0.21 10.6 0.0 0.47 9.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1616) HTH_24 PF13412.1 gi|284164545|ref|YP_003402824.1| - 0.015 14.6 0.5 0.24 10.7 0.1 2.6 2 1 0 2 2 2 0 Winged helix-turn-helix DNA-binding Ribosomal_S15 PF00312.17 gi|284164545|ref|YP_003402824.1| - 0.038 13.7 0.2 0.054 13.2 0.2 1.2 1 0 0 1 1 1 0 Ribosomal protein S15 HTH_20 PF12840.2 gi|284164545|ref|YP_003402824.1| - 0.049 13.4 0.0 0.06 13.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|284164545|ref|YP_003402824.1| - 0.13 11.8 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain HTH_10 PF04967.7 gi|284164546|ref|YP_003402825.1| - 1e-18 66.6 0.4 2e-18 65.6 0.0 1.8 2 0 0 2 2 2 1 HTH DNA binding domain GAF_2 PF13185.1 gi|284164546|ref|YP_003402825.1| - 5.1e-14 53.0 0.8 1.2e-13 51.7 0.1 2.0 2 0 0 2 2 2 1 GAF domain PAS_4 PF08448.5 gi|284164546|ref|YP_003402825.1| - 1.6e-08 34.5 2.3 8.4e-08 32.2 0.5 2.7 3 0 0 3 3 3 1 PAS fold PAS_9 PF13426.1 gi|284164546|ref|YP_003402825.1| - 4e-07 30.3 0.0 1.9e-05 24.9 0.0 2.5 2 0 0 2 2 2 1 PAS domain GAF_3 PF13492.1 gi|284164546|ref|YP_003402825.1| - 9.2e-07 29.0 0.0 1.9e-06 28.0 0.0 1.6 1 0 0 1 1 1 1 GAF domain GAF PF01590.21 gi|284164546|ref|YP_003402825.1| - 3.6e-06 27.1 0.0 1.9e-05 24.8 0.0 2.3 2 0 0 2 2 2 1 GAF domain PAS PF00989.19 gi|284164546|ref|YP_003402825.1| - 1.4e-05 24.8 0.0 3.8e-05 23.4 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|284164546|ref|YP_003402825.1| - 2.4e-05 23.9 0.1 7.9e-05 22.3 0.0 2.0 1 0 0 1 1 1 1 PAS domain Sigma70_r4 PF04545.11 gi|284164546|ref|YP_003402825.1| - 0.00059 19.0 0.0 0.0029 16.8 0.0 2.2 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_20 PF12840.2 gi|284164546|ref|YP_003402825.1| - 0.0061 16.3 0.0 0.02 14.6 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|284164546|ref|YP_003402825.1| - 0.0068 15.8 0.0 0.063 12.7 0.0 2.2 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_5 PF01022.15 gi|284164546|ref|YP_003402825.1| - 0.017 14.7 0.1 0.036 13.7 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|284164546|ref|YP_003402825.1| - 0.027 13.8 0.0 0.059 12.7 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding PAS_7 PF12860.2 gi|284164546|ref|YP_003402825.1| - 0.051 13.5 0.0 0.3 11.0 0.0 2.3 2 0 0 2 2 2 0 PAS fold DUF134 PF02001.11 gi|284164546|ref|YP_003402825.1| - 0.1 12.5 0.0 0.24 11.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF134 PAS_2 PF08446.6 gi|284164546|ref|YP_003402825.1| - 0.14 12.6 0.0 0.33 11.4 0.0 1.6 1 0 0 1 1 1 0 PAS fold HATPase_c PF02518.21 gi|284164547|ref|YP_003402826.1| - 3.1e-20 71.9 0.0 6.1e-20 70.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|284164547|ref|YP_003402826.1| - 1.2e-06 28.4 3.6 1.2e-05 25.1 0.3 2.8 2 1 1 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|284164547|ref|YP_003402826.1| - 1.7e-06 28.0 1.4 0.00015 21.7 1.0 2.7 1 1 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.1 gi|284164547|ref|YP_003402826.1| - 3.9e-06 26.6 1.1 7.7e-06 25.7 0.0 2.0 2 1 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_9 PF13426.1 gi|284164547|ref|YP_003402826.1| - 0.0057 17.0 0.0 0.018 15.4 0.0 1.9 2 0 0 2 2 2 1 PAS domain HATPase_c_3 PF13589.1 gi|284164547|ref|YP_003402826.1| - 0.017 14.7 0.0 0.03 13.9 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase adh_short PF00106.20 gi|284164547|ref|YP_003402826.1| - 0.12 12.3 0.1 0.12 12.3 0.1 2.7 3 0 0 3 3 3 0 short chain dehydrogenase HalX PF08663.5 gi|284164548|ref|YP_003402827.1| - 2e-14 53.3 5.4 3.9e-14 52.3 0.3 2.4 2 0 0 2 2 2 1 HalX domain Response_reg PF00072.19 gi|284164548|ref|YP_003402827.1| - 9.3e-13 48.1 0.2 1.5e-12 47.4 0.1 1.4 1 0 0 1 1 1 1 Response regulator receiver domain 5-nucleotidase PF06189.7 gi|284164548|ref|YP_003402827.1| - 0.018 13.8 0.0 0.023 13.5 0.0 1.2 1 0 0 1 1 1 0 5'-nucleotidase UPF0449 PF15136.1 gi|284164548|ref|YP_003402827.1| - 0.05 13.8 0.2 0.13 12.5 0.1 1.6 2 0 0 2 2 2 0 Uncharacterised protein family UPF0449 HATPase_c PF02518.21 gi|284164549|ref|YP_003402828.1| - 3.8e-15 55.5 0.0 8.6e-15 54.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|284164549|ref|YP_003402828.1| - 9e-10 38.4 0.2 1.7e-09 37.5 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HAMP PF00672.20 gi|284164549|ref|YP_003402828.1| - 1.5e-05 25.0 0.1 1.5e-05 25.0 0.1 2.9 3 1 0 3 3 3 1 HAMP domain SBP_bac_5 PF00496.17 gi|284164550|ref|YP_003402829.1| - 5.2e-39 134.1 2.3 3.6e-35 121.5 0.8 2.1 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle Amelin PF05111.7 gi|284164552|ref|YP_003402831.1| - 0.2 10.3 2.1 0.28 9.8 1.5 1.1 1 0 0 1 1 1 0 Ameloblastin precursor (Amelin) Curlin_rpt PF07012.7 gi|284164553|ref|YP_003402832.1| - 2.2e-27 94.4 57.4 0.0016 18.0 1.9 10.9 1 1 8 9 9 9 9 Curlin associated repeat DUF3973 PF13119.1 gi|284164553|ref|YP_003402832.1| - 0.13 12.2 0.3 0.96 9.4 0.0 2.5 2 1 1 3 3 3 0 Domain of unknown function (DUF3973) Slp PF03843.8 gi|284164555|ref|YP_003402834.1| - 0.013 14.5 0.0 0.15 11.0 0.0 2.1 1 1 1 2 2 2 0 Outer membrane lipoprotein Slp family DUF457 PF04307.9 gi|284164556|ref|YP_003402835.1| - 4.9e-12 45.4 9.7 5.8e-12 45.2 6.7 1.0 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) MerB PF03243.10 gi|284164557|ref|YP_003402836.1| - 0.0049 16.6 0.3 0.0049 16.6 0.2 1.0 1 0 0 1 1 1 1 Alkylmercury lyase RHH_1 PF01402.16 gi|284164558|ref|YP_003402837.1| - 0.00027 20.6 0.6 0.00068 19.4 0.1 2.0 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family Prefoldin_2 PF01920.15 gi|284164558|ref|YP_003402837.1| - 0.023 14.4 1.4 0.65 9.7 0.2 2.2 1 1 1 2 2 2 0 Prefoldin subunit HicB PF05534.7 gi|284164558|ref|YP_003402837.1| - 0.041 13.4 0.0 0.055 13.0 0.0 1.2 1 0 0 1 1 1 0 HicB family DUF1778 PF08681.6 gi|284164558|ref|YP_003402837.1| - 0.083 12.7 0.1 0.18 11.6 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1778) NMD3 PF04981.8 gi|284164558|ref|YP_003402837.1| - 0.21 10.6 0.8 0.25 10.4 0.6 1.1 1 0 0 1 1 1 0 NMD3 family HTH_27 PF13463.1 gi|284164559|ref|YP_003402838.1| - 0.069 13.4 0.1 0.077 13.3 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR PF01047.17 gi|284164559|ref|YP_003402838.1| - 0.13 12.0 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.5 gi|284164559|ref|YP_003402838.1| - 0.15 11.7 0.9 0.19 11.3 0.6 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain Thiolase_C PF02803.13 gi|284164561|ref|YP_003402840.1| - 4.7e-07 29.2 0.1 1.1e-06 28.0 0.1 1.6 1 0 0 1 1 1 1 Thiolase, C-terminal domain Thiolase_N PF00108.18 gi|284164561|ref|YP_003402840.1| - 0.0019 17.2 0.0 0.011 14.7 0.0 2.1 2 0 0 2 2 2 1 Thiolase, N-terminal domain DUF35 PF01796.12 gi|284164562|ref|YP_003402841.1| - 4.6e-09 36.3 1.7 7e-09 35.7 1.2 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain TM2 PF05154.11 gi|284164563|ref|YP_003402842.1| - 0.0032 17.6 1.2 0.0053 16.9 0.8 1.4 1 0 0 1 1 1 1 TM2 domain Lar_restr_allev PF14354.1 gi|284164564|ref|YP_003402843.1| - 0.0024 18.1 1.7 0.0028 17.9 1.2 1.3 1 1 0 1 1 1 1 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.2 gi|284164564|ref|YP_003402843.1| - 0.0092 15.7 1.0 0.012 15.3 0.7 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain TFIIS_C PF01096.13 gi|284164564|ref|YP_003402843.1| - 0.018 14.6 4.2 3.2 7.4 2.9 2.1 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) TF_Zn_Ribbon PF08271.7 gi|284164564|ref|YP_003402843.1| - 0.033 13.5 0.7 0.041 13.2 0.5 1.3 1 0 0 1 1 1 0 TFIIB zinc-binding DUF2387 PF09526.5 gi|284164564|ref|YP_003402843.1| - 0.034 14.0 1.0 0.036 13.9 0.7 1.1 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) zf-ribbon_3 PF13248.1 gi|284164564|ref|YP_003402843.1| - 0.038 13.1 0.1 0.055 12.7 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbon domain zf-C2HC_2 PF13913.1 gi|284164564|ref|YP_003402843.1| - 0.055 13.1 0.2 0.055 13.1 0.1 1.8 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Zn_Tnp_IS1 PF03811.8 gi|284164564|ref|YP_003402843.1| - 0.1 12.1 2.7 0.24 10.9 1.9 1.7 1 1 0 1 1 1 0 InsA N-terminal domain zf-C4_Topoisom PF01396.14 gi|284164564|ref|YP_003402843.1| - 0.1 12.1 0.2 0.12 11.8 0.1 1.3 1 0 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger OrfB_Zn_ribbon PF07282.6 gi|284164564|ref|YP_003402843.1| - 0.15 11.7 1.1 0.18 11.5 0.8 1.1 1 0 0 1 1 1 0 Putative transposase DNA-binding domain RRN7 PF11781.3 gi|284164564|ref|YP_003402843.1| - 0.15 11.5 2.1 0.2 11.1 0.1 1.9 1 1 1 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-C2H2 PF00096.21 gi|284164564|ref|YP_003402843.1| - 0.25 11.7 1.1 1.2 9.6 0.1 2.0 1 1 1 2 2 2 0 Zinc finger, C2H2 type HypA PF01155.14 gi|284164564|ref|YP_003402843.1| - 0.25 11.0 1.1 2.7 7.7 0.1 1.9 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|284164564|ref|YP_003402843.1| - 0.28 11.1 2.5 2 8.4 0.2 2.1 2 0 0 2 2 2 0 Zinc ribbon domain UPF0547 PF10571.4 gi|284164564|ref|YP_003402843.1| - 0.46 10.2 6.1 7.1 6.4 1.3 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF329 PF03884.9 gi|284164564|ref|YP_003402843.1| - 0.49 9.9 2.9 1.1 8.8 2.0 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF329) zinc_ribbon_4 PF13717.1 gi|284164564|ref|YP_003402843.1| - 0.55 9.9 3.4 8.2 6.2 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|284164564|ref|YP_003402843.1| - 0.57 9.8 3.5 9.3 5.9 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain DUF1610 PF07754.6 gi|284164564|ref|YP_003402843.1| - 0.67 10.1 5.4 1.6 8.8 3.7 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1610) Prim_Zn_Ribbon PF08273.7 gi|284164564|ref|YP_003402843.1| - 0.76 9.9 6.2 2 8.5 4.3 1.7 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase DUF457 PF04307.9 gi|284164566|ref|YP_003402845.1| - 3.3e-13 49.2 4.5 4.5e-13 48.8 3.1 1.2 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Zn_dep_PLPC PF00882.13 gi|284164566|ref|YP_003402845.1| - 0.0038 16.8 0.1 0.0057 16.3 0.1 1.2 1 0 0 1 1 1 1 Zinc dependent phospholipase C DUF4184 PF13803.1 gi|284164566|ref|YP_003402845.1| - 0.33 10.2 4.0 0.47 9.7 0.0 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF4184) DUF457 PF04307.9 gi|284164567|ref|YP_003402846.1| - 6.4e-15 54.8 8.9 7.4e-15 54.6 6.1 1.0 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Trp_oprn_chp PF09534.5 gi|284164567|ref|YP_003402846.1| - 0.89 9.1 10.8 2.4 7.7 7.5 1.7 1 1 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) BPD_transp_2 PF02653.11 gi|284164567|ref|YP_003402846.1| - 3.9 6.3 8.5 13 4.6 5.9 1.8 1 1 0 1 1 1 0 Branched-chain amino acid transport system / permease component zf-CHY PF05495.7 gi|284164570|ref|YP_003402849.1| - 0.0024 18.0 0.1 0.0027 17.8 0.1 1.1 1 0 0 1 1 1 1 CHY zinc finger A2L_zn_ribbon PF08792.5 gi|284164570|ref|YP_003402849.1| - 0.0046 16.3 1.6 0.68 9.4 0.1 2.2 2 0 0 2 2 2 2 A2L zinc ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|284164570|ref|YP_003402849.1| - 0.016 14.9 1.8 0.078 12.7 0.2 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon FYVE PF01363.16 gi|284164570|ref|YP_003402849.1| - 0.029 14.2 0.3 0.037 13.9 0.2 1.1 1 0 0 1 1 1 0 FYVE zinc finger Gin PF10764.4 gi|284164570|ref|YP_003402849.1| - 0.032 13.9 3.1 0.3 10.8 0.1 2.1 1 1 1 2 2 2 0 Inhibitor of sigma-G Gin Nudix_N_2 PF14803.1 gi|284164570|ref|YP_003402849.1| - 0.034 13.8 2.7 0.13 11.9 0.2 2.1 2 0 0 2 2 2 0 Nudix N-terminal zf-IS66 PF13005.2 gi|284164570|ref|YP_003402849.1| - 0.035 14.0 0.4 1.7 8.6 0.0 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 NinF PF05810.7 gi|284164570|ref|YP_003402849.1| - 0.04 13.7 0.6 0.089 12.6 0.4 1.6 1 1 0 1 1 1 0 NinF protein UPF0547 PF10571.4 gi|284164570|ref|YP_003402849.1| - 0.052 13.2 0.5 0.052 13.2 0.4 1.9 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 HypA PF01155.14 gi|284164570|ref|YP_003402849.1| - 0.076 12.7 0.3 0.074 12.7 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|284164570|ref|YP_003402849.1| - 0.085 12.6 1.8 0.15 11.8 1.2 1.4 1 1 0 1 1 1 0 Double zinc ribbon DUF1451 PF07295.6 gi|284164570|ref|YP_003402849.1| - 0.091 12.5 0.3 0.099 12.4 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) zf-RING_3 PF14369.1 gi|284164570|ref|YP_003402849.1| - 0.12 12.4 1.8 0.2 11.6 1.2 1.4 1 1 0 1 1 1 0 zinc-finger DUF3133 PF11331.3 gi|284164570|ref|YP_003402849.1| - 0.12 11.9 0.6 0.16 11.5 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3133) zinc-ribbons_6 PF07191.7 gi|284164570|ref|YP_003402849.1| - 0.16 11.7 1.8 1.4 8.7 1.3 2.0 1 1 0 1 1 1 0 zinc-ribbons zf-HYPF PF07503.7 gi|284164570|ref|YP_003402849.1| - 0.95 8.9 4.2 6.6 6.2 0.3 2.2 2 0 0 2 2 2 0 HypF finger Prok-RING_1 PF14446.1 gi|284164570|ref|YP_003402849.1| - 1.8 8.3 4.7 4.7 7.0 3.3 1.6 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 NUDIX PF00293.23 gi|284164573|ref|YP_003402852.1| - 1.1e-19 70.4 0.0 1.4e-19 70.0 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain DUF502 PF04367.8 gi|284164574|ref|YP_003402853.1| - 1.3e-16 60.2 0.2 2.1e-16 59.6 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF502) Bac_luciferase PF00296.15 gi|284164575|ref|YP_003402854.1| - 5.9e-05 22.3 4.9 5.9e-05 22.3 3.4 1.4 1 1 0 1 1 1 1 Luciferase-like monooxygenase DAO PF01266.19 gi|284164576|ref|YP_003402855.1| - 9.7e-73 245.1 5.6 1.1e-72 244.9 3.9 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|284164576|ref|YP_003402855.1| - 6.6e-07 29.2 1.5 1.9e-06 27.7 1.1 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|284164576|ref|YP_003402855.1| - 1.2e-05 25.2 1.5 0.00028 20.8 1.0 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.1 gi|284164576|ref|YP_003402855.1| - 8.4e-05 22.7 0.0 0.00017 21.8 0.0 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding ApbA PF02558.11 gi|284164576|ref|YP_003402855.1| - 9.1e-05 21.9 0.3 0.00018 20.9 0.2 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA FAD_oxidored PF12831.2 gi|284164576|ref|YP_003402855.1| - 0.0001 21.5 1.8 0.00015 20.9 1.3 1.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|284164576|ref|YP_003402855.1| - 0.00013 20.7 0.7 0.024 13.3 0.1 2.1 2 0 0 2 2 2 2 Tryptophan halogenase FAD_binding_3 PF01494.14 gi|284164576|ref|YP_003402855.1| - 0.00053 19.1 0.5 0.00096 18.2 0.4 1.4 1 0 0 1 1 1 1 FAD binding domain 3HCDH_N PF02737.13 gi|284164576|ref|YP_003402855.1| - 0.00056 19.6 0.1 0.0011 18.7 0.1 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GIDA PF01134.17 gi|284164576|ref|YP_003402855.1| - 0.0007 18.5 0.7 0.0048 15.8 0.4 2.0 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|284164576|ref|YP_003402855.1| - 0.0012 19.2 0.3 0.003 17.9 0.2 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|284164576|ref|YP_003402855.1| - 0.0015 17.6 1.3 0.0019 17.3 0.1 1.7 2 0 0 2 2 2 1 Thi4 family NAD_binding_9 PF13454.1 gi|284164576|ref|YP_003402855.1| - 0.0019 17.9 0.5 1.3 8.7 0.0 2.5 2 0 0 2 2 2 2 FAD-NAD(P)-binding FAD_binding_2 PF00890.19 gi|284164576|ref|YP_003402855.1| - 0.0026 16.6 4.7 0.0041 16.0 3.3 1.6 1 1 0 1 1 1 1 FAD binding domain HI0933_like PF03486.9 gi|284164576|ref|YP_003402855.1| - 0.0043 15.5 0.7 0.0072 14.8 0.2 1.5 2 0 0 2 2 2 1 HI0933-like protein ThiF PF00899.16 gi|284164576|ref|YP_003402855.1| - 0.0083 15.9 0.1 0.018 14.8 0.1 1.6 1 0 0 1 1 1 1 ThiF family Pyr_redox_3 PF13738.1 gi|284164576|ref|YP_003402855.1| - 0.012 15.7 0.0 0.026 14.5 0.0 1.5 2 0 0 2 2 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_Gly3P_dh_N PF01210.18 gi|284164576|ref|YP_003402855.1| - 0.023 14.4 0.1 0.043 13.5 0.1 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus UDPG_MGDP_dh_N PF03721.9 gi|284164576|ref|YP_003402855.1| - 0.029 13.7 0.1 0.053 12.9 0.1 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TrkA_N PF02254.13 gi|284164576|ref|YP_003402855.1| - 0.16 11.9 1.4 1.1 9.3 0.0 2.8 3 0 0 3 3 3 0 TrkA-N domain HSP20 PF00011.16 gi|284164577|ref|YP_003402856.1| - 2.9e-07 30.2 0.0 3.9e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family YsaB PF13983.1 gi|284164577|ref|YP_003402856.1| - 0.094 12.8 0.0 0.21 11.7 0.0 1.5 1 0 0 1 1 1 0 YsaB-like lipoprotein DUF2752 PF10825.3 gi|284164578|ref|YP_003402857.1| - 0.16 12.0 0.7 0.22 11.5 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2752) DICT PF10069.4 gi|284164579|ref|YP_003402858.1| - 5.8e-14 51.7 0.0 8.1e-14 51.2 0.0 1.2 1 0 0 1 1 1 1 Sensory domain found in DIguanylate Cyclases & Two-component systems Radical_SAM PF04055.16 gi|284164581|ref|YP_003402860.1| - 5e-14 52.7 0.0 1.7e-13 51.0 0.0 2.0 1 1 0 1 1 1 1 Radical SAM superfamily HHH PF00633.18 gi|284164581|ref|YP_003402860.1| - 3.2e-05 23.3 0.1 0.0001 21.7 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|284164581|ref|YP_003402860.1| - 4.9e-05 23.1 0.0 0.00021 21.1 0.0 1.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif PsbU PF06514.6 gi|284164581|ref|YP_003402860.1| - 0.00086 19.0 0.0 0.0027 17.5 0.0 1.8 2 0 0 2 2 2 1 Photosystem II 12 kDa extrinsic protein (PsbU) HHH_5 PF14520.1 gi|284164581|ref|YP_003402860.1| - 0.0041 17.2 0.0 0.014 15.5 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|284164581|ref|YP_003402860.1| - 0.049 13.5 0.1 0.17 11.8 0.0 1.9 2 0 0 2 2 2 0 Helix-hairpin-helix motif TRAM PF01938.15 gi|284164582|ref|YP_003402861.1| - 4.7e-15 55.1 3.5 7e-15 54.5 2.4 1.3 1 0 0 1 1 1 1 TRAM domain PcrB PF01884.12 gi|284164585|ref|YP_003402864.1| - 2.8e-33 115.1 1.6 4.6e-33 114.4 1.1 1.3 1 1 0 1 1 1 1 PcrB family His_biosynth PF00977.16 gi|284164585|ref|YP_003402864.1| - 2.3e-05 23.7 0.0 3.9e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein IGPS PF00218.16 gi|284164585|ref|YP_003402864.1| - 0.024 13.7 0.0 1.9 7.4 0.0 2.1 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase Dus PF01207.12 gi|284164585|ref|YP_003402864.1| - 0.052 12.3 0.0 0.092 11.5 0.0 1.4 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) DHO_dh PF01180.16 gi|284164585|ref|YP_003402864.1| - 0.11 11.4 0.0 0.16 10.9 0.0 1.2 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase CxxCxxCC PF03692.10 gi|284164586|ref|YP_003402865.1| - 4.4e-14 52.7 2.3 7.1e-14 52.0 1.6 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain HIPIP PF01355.12 gi|284164586|ref|YP_003402865.1| - 0.01 15.9 2.1 0.058 13.5 0.1 2.2 2 0 0 2 2 2 0 High potential iron-sulfur protein Lactamase_B PF00753.22 gi|284164587|ref|YP_003402866.1| - 1.2e-21 77.2 7.6 1.7e-21 76.7 5.2 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|284164587|ref|YP_003402866.1| - 1.4e-05 24.7 0.0 2e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|284164587|ref|YP_003402866.1| - 0.0059 16.3 0.0 0.0078 15.9 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain HTH_24 PF13412.1 gi|284164588|ref|YP_003402867.1| - 0.00038 19.7 0.0 0.0006 19.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GntR PF00392.16 gi|284164588|ref|YP_003402867.1| - 0.0011 18.2 0.1 0.0021 17.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.2 gi|284164588|ref|YP_003402867.1| - 0.0025 17.5 0.1 0.0035 17.1 0.1 1.4 1 1 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|284164588|ref|YP_003402867.1| - 0.0041 16.7 0.1 0.006 16.2 0.1 1.3 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.12 gi|284164588|ref|YP_003402867.1| - 0.0045 16.4 0.0 0.007 15.8 0.0 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit TrmB PF01978.14 gi|284164588|ref|YP_003402867.1| - 0.027 14.1 0.0 0.04 13.6 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_12 PF08461.5 gi|284164588|ref|YP_003402867.1| - 0.036 13.7 0.3 0.23 11.1 0.1 2.3 1 1 1 2 2 2 0 Ribonuclease R winged-helix domain HTH_36 PF13730.1 gi|284164588|ref|YP_003402867.1| - 0.037 14.1 0.0 0.056 13.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Methyltransf_11 PF08241.7 gi|284164589|ref|YP_003402868.1| - 4.7e-22 78.2 0.0 7.5e-22 77.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|284164589|ref|YP_003402868.1| - 6.5e-19 68.0 0.0 7.9e-19 67.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|284164589|ref|YP_003402868.1| - 3.4e-16 59.8 0.0 5.2e-16 59.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|284164589|ref|YP_003402868.1| - 5.1e-16 58.8 0.0 8.2e-16 58.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|284164589|ref|YP_003402868.1| - 1.9e-15 56.6 0.0 2.5e-15 56.2 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|284164589|ref|YP_003402868.1| - 3.3e-15 56.1 0.0 4.5e-15 55.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|284164589|ref|YP_003402868.1| - 1.7e-14 54.0 0.0 2.9e-14 53.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|284164589|ref|YP_003402868.1| - 1.8e-11 44.1 0.1 3.3e-11 43.2 0.1 1.6 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|284164589|ref|YP_003402868.1| - 1.5e-07 30.9 0.0 4.1e-07 29.5 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase small domain UPF0020 PF01170.13 gi|284164589|ref|YP_003402868.1| - 3.9e-07 29.8 0.0 1e-06 28.4 0.0 1.6 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 MetW PF07021.7 gi|284164589|ref|YP_003402868.1| - 1.6e-06 27.6 0.0 3.4e-06 26.5 0.0 1.6 2 0 0 2 2 2 1 Methionine biosynthesis protein MetW RrnaAD PF00398.15 gi|284164589|ref|YP_003402868.1| - 4.6e-05 22.5 0.0 6.3e-05 22.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase TehB PF03848.9 gi|284164589|ref|YP_003402868.1| - 0.00013 21.1 0.0 0.00017 20.8 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_9 PF08003.6 gi|284164589|ref|YP_003402868.1| - 0.00018 20.3 0.0 0.00024 19.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_4 PF02390.12 gi|284164589|ref|YP_003402868.1| - 0.00063 18.8 0.0 0.0013 17.7 0.0 1.4 1 1 0 1 1 1 1 Putative methyltransferase Methyltransf_20 PF12147.3 gi|284164589|ref|YP_003402868.1| - 0.0027 16.6 0.0 0.0036 16.2 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase NodS PF05401.6 gi|284164589|ref|YP_003402868.1| - 0.003 16.9 0.0 0.004 16.5 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) TPMT PF05724.6 gi|284164589|ref|YP_003402868.1| - 0.0047 16.3 0.0 0.0069 15.8 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) CMAS PF02353.15 gi|284164589|ref|YP_003402868.1| - 0.0057 15.7 0.0 0.0075 15.3 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase tRNA_U5-meth_tr PF05958.6 gi|284164589|ref|YP_003402868.1| - 0.0062 15.2 0.0 0.012 14.3 0.0 1.5 1 1 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase DUF938 PF06080.7 gi|284164589|ref|YP_003402868.1| - 0.019 14.5 0.0 0.036 13.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_29 PF03141.11 gi|284164589|ref|YP_003402868.1| - 0.026 12.8 0.0 0.03 12.6 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_3 PF01596.12 gi|284164589|ref|YP_003402868.1| - 0.044 12.8 0.0 0.07 12.1 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase FtsJ PF01728.14 gi|284164589|ref|YP_003402868.1| - 0.059 13.3 0.1 0.1 12.5 0.0 1.3 1 1 0 1 1 1 0 FtsJ-like methyltransferase PCMT PF01135.14 gi|284164589|ref|YP_003402868.1| - 0.067 12.7 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_32 PF13679.1 gi|284164589|ref|YP_003402868.1| - 0.069 12.8 0.0 0.098 12.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Glycos_transf_2 PF00535.21 gi|284164590|ref|YP_003402869.1| - 3.1e-18 66.0 0.1 5e-18 65.3 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|284164590|ref|YP_003402869.1| - 6.4e-09 35.9 1.6 2e-07 31.0 1.0 2.3 2 1 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|284164590|ref|YP_003402869.1| - 0.0061 15.6 0.0 0.0093 15.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 ECH PF00378.15 gi|284164591|ref|YP_003402870.1| - 1.3e-54 184.9 0.0 1.5e-54 184.6 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family ECH_C PF13766.1 gi|284164591|ref|YP_003402870.1| - 0.0019 18.3 0.0 0.0035 17.4 0.0 1.4 1 0 0 1 1 1 1 2-enoyl-CoA Hydratase C-terminal region MarR_2 PF12802.2 gi|284164592|ref|YP_003402871.1| - 2.3e-09 36.7 0.2 1.4e-08 34.2 0.1 2.3 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|284164592|ref|YP_003402871.1| - 2.8e-09 36.1 0.0 5.6e-09 35.2 0.0 1.5 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|284164592|ref|YP_003402871.1| - 9.3e-09 35.4 0.1 8.5e-08 32.4 0.0 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR PF01047.17 gi|284164592|ref|YP_003402871.1| - 5.9e-07 29.1 0.0 1.3e-06 28.0 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|284164592|ref|YP_003402871.1| - 1.5e-05 24.6 0.1 3.7e-05 23.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|284164592|ref|YP_003402871.1| - 7.4e-05 22.3 0.0 0.00012 21.6 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_13 PF11972.3 gi|284164592|ref|YP_003402871.1| - 0.0001 22.0 0.1 0.00024 20.8 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain HTH_45 PF14947.1 gi|284164592|ref|YP_003402871.1| - 0.00011 21.9 0.0 0.0002 21.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_Crp_2 PF13545.1 gi|284164592|ref|YP_003402871.1| - 0.00015 21.4 0.0 0.00033 20.3 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.5 gi|284164592|ref|YP_003402871.1| - 0.00034 20.1 0.0 0.0011 18.4 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|284164592|ref|YP_003402871.1| - 0.00051 19.6 0.0 0.001 18.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|284164592|ref|YP_003402871.1| - 0.00096 18.8 0.1 0.0019 17.8 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF387 PF04079.11 gi|284164592|ref|YP_003402871.1| - 0.0039 16.5 0.0 0.0066 15.8 0.0 1.4 1 0 0 1 1 1 1 Putative transcriptional regulators (Ypuh-like) Fe_dep_repress PF01325.14 gi|284164592|ref|YP_003402871.1| - 0.004 17.0 0.1 0.011 15.6 0.1 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.15 gi|284164592|ref|YP_003402871.1| - 0.0046 17.0 0.0 0.02 15.0 0.0 2.0 2 0 0 2 2 2 1 Transcriptional regulator Mnd1 PF03962.10 gi|284164592|ref|YP_003402871.1| - 0.0051 16.4 0.0 0.0081 15.8 0.0 1.2 1 0 0 1 1 1 1 Mnd1 family HTH_1 PF00126.22 gi|284164592|ref|YP_003402871.1| - 0.0062 16.2 0.0 0.018 14.8 0.0 1.9 1 1 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family MotA_activ PF09114.5 gi|284164592|ref|YP_003402871.1| - 0.0086 15.8 0.0 0.018 14.7 0.0 1.6 1 1 0 1 1 1 1 Transcription factor MotA, activation domain GntR PF00392.16 gi|284164592|ref|YP_003402871.1| - 0.009 15.4 0.1 0.026 13.9 0.1 1.8 2 0 0 2 2 1 1 Bacterial regulatory proteins, gntR family HemN_C PF06969.11 gi|284164592|ref|YP_003402871.1| - 0.03 14.3 0.0 0.091 12.8 0.0 1.8 2 0 0 2 2 1 0 HemN C-terminal domain HTH_23 PF13384.1 gi|284164592|ref|YP_003402871.1| - 0.033 13.8 0.1 0.069 12.8 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_12 PF08461.5 gi|284164592|ref|YP_003402871.1| - 0.035 13.8 0.0 0.079 12.7 0.0 1.6 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_AsnC-type PF13404.1 gi|284164592|ref|YP_003402871.1| - 0.051 13.1 0.1 0.13 11.8 0.1 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_10 PF04967.7 gi|284164592|ref|YP_003402871.1| - 0.071 12.7 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_3 PF01381.17 gi|284164592|ref|YP_003402871.1| - 0.12 12.1 0.1 0.24 11.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix Rio2_N PF09202.6 gi|284164592|ref|YP_003402871.1| - 0.13 12.3 0.0 0.26 11.3 0.0 1.5 1 0 0 1 1 1 0 Rio2, N-terminal RepL PF05732.6 gi|284164592|ref|YP_003402871.1| - 0.14 11.3 0.0 0.19 10.9 0.0 1.2 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_36 PF13730.1 gi|284164592|ref|YP_003402871.1| - 0.14 12.2 0.0 0.23 11.6 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4129 PF13559.1 gi|284164592|ref|YP_003402871.1| - 0.91 9.5 6.3 5.8 6.9 0.3 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4129) Exosortase_EpsH PF09721.5 gi|284164593|ref|YP_003402872.1| - 2.9e-46 157.8 20.2 4.1e-46 157.3 14.0 1.1 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) Metallophos PF00149.23 gi|284164594|ref|YP_003402873.1| - 2.1e-05 24.0 0.1 4.4e-05 22.9 0.1 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase EamA PF00892.15 gi|284164595|ref|YP_003402874.1| - 1.7e-07 31.3 15.6 2.2e-07 30.9 10.8 1.2 1 0 0 1 1 1 1 EamA-like transporter family PTPS_related PF10131.4 gi|284164595|ref|YP_003402874.1| - 0.02 13.0 12.2 0.08 11.0 6.7 2.0 1 1 1 2 2 2 0 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein CcmD PF04995.9 gi|284164595|ref|YP_003402874.1| - 0.12 12.1 0.5 0.12 12.1 0.3 2.9 4 0 0 4 4 4 0 Heme exporter protein D (CcmD) UPF0546 PF10639.4 gi|284164595|ref|YP_003402874.1| - 0.19 11.5 5.0 0.22 11.3 2.9 1.5 1 1 0 1 1 1 0 Uncharacterised protein family UPF0546 UNC-50 PF05216.8 gi|284164595|ref|YP_003402874.1| - 0.5 9.5 4.4 0.093 11.9 0.8 1.5 2 0 0 2 2 2 0 UNC-50 family TPT PF03151.11 gi|284164595|ref|YP_003402874.1| - 1.4 8.5 14.1 4.1 7.0 9.8 1.7 1 1 0 1 1 1 0 Triose-phosphate Transporter family EmrE PF13536.1 gi|284164595|ref|YP_003402874.1| - 1.4 9.1 22.6 0.23 11.6 10.8 2.1 1 1 1 2 2 2 0 Multidrug resistance efflux transporter Amino_oxidase PF01593.19 gi|284164596|ref|YP_003402875.1| - 6.4e-33 114.4 4.4 1.6e-31 109.8 3.1 2.4 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|284164596|ref|YP_003402875.1| - 3.2e-14 52.7 0.2 1.1e-13 50.9 0.2 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|284164596|ref|YP_003402875.1| - 3.2e-08 32.8 11.1 0.00043 19.2 3.0 2.4 2 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|284164596|ref|YP_003402875.1| - 6e-08 32.1 1.7 0.00012 21.2 1.4 2.2 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_3 PF13738.1 gi|284164596|ref|YP_003402875.1| - 4.5e-06 26.8 0.0 0.0013 18.8 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|284164596|ref|YP_003402875.1| - 8.6e-06 24.4 0.2 0.0014 17.1 0.2 2.2 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_2 PF00890.19 gi|284164596|ref|YP_003402875.1| - 3.7e-05 22.7 2.8 0.00032 19.6 2.4 2.0 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|284164596|ref|YP_003402875.1| - 4.9e-05 23.3 0.0 0.00017 21.5 0.0 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|284164596|ref|YP_003402875.1| - 0.00043 20.6 2.3 0.0066 16.8 0.9 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|284164596|ref|YP_003402875.1| - 0.0015 17.7 0.4 0.0024 17.0 0.3 1.2 1 0 0 1 1 1 1 Thi4 family NAD_binding_9 PF13454.1 gi|284164596|ref|YP_003402875.1| - 0.0086 15.8 1.8 0.81 9.4 0.0 2.5 2 0 0 2 2 2 1 FAD-NAD(P)-binding FAD_oxidored PF12831.2 gi|284164596|ref|YP_003402875.1| - 0.021 13.9 6.0 0.036 13.1 4.1 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase GIDA PF01134.17 gi|284164596|ref|YP_003402875.1| - 0.041 12.7 3.1 0.028 13.2 1.1 1.5 2 0 0 2 2 2 0 Glucose inhibited division protein A FMO-like PF00743.14 gi|284164596|ref|YP_003402875.1| - 0.047 11.8 0.0 0.063 11.4 0.0 1.1 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like NAD_binding_10 PF13460.1 gi|284164596|ref|YP_003402875.1| - 0.059 13.3 0.9 1.1 9.1 0.1 2.4 2 1 0 2 2 2 0 NADH(P)-binding Lycopene_cycl PF05834.7 gi|284164596|ref|YP_003402875.1| - 0.15 10.9 1.4 0.35 9.7 0.2 1.9 2 0 0 2 2 2 0 Lycopene cyclase protein Gluconate_2-dh3 PF13618.1 gi|284164597|ref|YP_003402876.1| - 1.2e-41 141.9 0.4 1.2e-41 141.9 0.3 1.6 2 0 0 2 2 2 1 Gluconate 2-dehydrogenase subunit 3 GvpO PF05800.6 gi|284164597|ref|YP_003402876.1| - 0.073 12.9 0.2 0.2 11.5 0.2 1.7 1 0 0 1 1 1 0 Gas vesicle synthesis protein GvpO DUF1515 PF07439.6 gi|284164597|ref|YP_003402876.1| - 0.15 11.8 0.0 0.29 10.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1515) GMC_oxred_C PF05199.8 gi|284164598|ref|YP_003402877.1| - 2.4e-18 66.8 0.0 5.3e-18 65.6 0.0 1.6 1 0 0 1 1 1 1 GMC oxidoreductase GMC_oxred_N PF00732.14 gi|284164598|ref|YP_003402877.1| - 4e-11 42.6 0.0 1.4e-08 34.3 0.0 2.4 3 0 0 3 3 3 2 GMC oxidoreductase DAO PF01266.19 gi|284164598|ref|YP_003402877.1| - 0.0014 17.6 0.5 0.081 11.8 0.1 2.4 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|284164598|ref|YP_003402877.1| - 0.065 13.0 0.0 0.15 11.9 0.0 1.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_10 PF13460.1 gi|284164598|ref|YP_003402877.1| - 0.074 13.0 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 NADH(P)-binding NAD_binding_8 PF13450.1 gi|284164598|ref|YP_003402877.1| - 0.11 12.4 0.1 0.42 10.6 0.1 2.0 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Lactamase_B PF00753.22 gi|284164599|ref|YP_003402878.1| - 1.1e-18 67.5 10.7 1.5e-18 67.1 7.4 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|284164599|ref|YP_003402878.1| - 0.00016 21.2 0.7 0.00024 20.7 0.5 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain ABC_tran PF00005.22 gi|284164600|ref|YP_003402879.1| - 7.6e-30 104.0 0.0 1.3e-29 103.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284164600|ref|YP_003402879.1| - 2e-11 44.3 0.1 5e-05 23.3 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|284164600|ref|YP_003402879.1| - 0.00079 20.2 0.2 0.0024 18.6 0.1 1.8 1 1 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|284164600|ref|YP_003402879.1| - 0.0015 18.9 0.0 0.0025 18.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|284164600|ref|YP_003402879.1| - 0.0015 17.8 0.1 0.035 13.3 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|284164600|ref|YP_003402879.1| - 0.0016 17.9 0.1 0.0036 16.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.1 gi|284164600|ref|YP_003402879.1| - 0.0089 15.6 0.3 0.017 14.6 0.1 1.6 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|284164600|ref|YP_003402879.1| - 0.021 14.5 0.1 0.4 10.4 0.0 2.2 2 0 0 2 2 2 0 Part of AAA domain ABC_ATPase PF09818.4 gi|284164600|ref|YP_003402879.1| - 0.025 13.1 0.3 0.74 8.3 0.1 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA PF00004.24 gi|284164600|ref|YP_003402879.1| - 0.045 13.9 0.0 0.12 12.6 0.0 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.1 gi|284164600|ref|YP_003402879.1| - 0.053 13.4 0.3 0.37 10.7 0.2 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.1 gi|284164600|ref|YP_003402879.1| - 0.055 13.6 0.1 0.15 12.1 0.0 1.9 1 1 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|284164600|ref|YP_003402879.1| - 0.067 12.7 0.1 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_25 PF13481.1 gi|284164600|ref|YP_003402879.1| - 0.11 11.8 0.0 0.18 11.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|284164600|ref|YP_003402879.1| - 0.14 12.0 0.0 1.2 8.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|284164600|ref|YP_003402879.1| - 0.14 10.9 0.3 0.66 8.8 0.0 2.0 2 0 0 2 2 2 0 Type II/IV secretion system protein DUF258 PF03193.11 gi|284164600|ref|YP_003402879.1| - 0.16 11.1 0.0 0.24 10.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 ABC_tran PF00005.22 gi|284164601|ref|YP_003402880.1| - 4.3e-30 104.7 0.0 5.6e-30 104.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284164601|ref|YP_003402880.1| - 7.1e-08 32.7 0.2 7.3e-06 26.1 0.0 2.1 1 1 0 2 2 2 1 AAA domain BCA_ABC_TP_C PF12399.3 gi|284164601|ref|YP_003402880.1| - 5.3e-06 25.9 0.4 1.1e-05 24.9 0.3 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_23 PF13476.1 gi|284164601|ref|YP_003402880.1| - 8.4e-05 22.9 0.3 0.00018 21.9 0.1 1.5 1 1 1 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|284164601|ref|YP_003402880.1| - 0.00014 21.2 0.0 0.00026 20.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|284164601|ref|YP_003402880.1| - 0.0058 15.8 0.0 0.011 14.9 0.0 1.4 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain Terminase_GpA PF05876.7 gi|284164601|ref|YP_003402880.1| - 0.0081 14.5 0.0 0.011 14.1 0.0 1.1 1 0 0 1 1 1 1 Phage terminase large subunit (GpA) DUF258 PF03193.11 gi|284164601|ref|YP_003402880.1| - 0.023 13.8 0.0 0.039 13.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|284164601|ref|YP_003402880.1| - 0.031 13.6 0.0 2.6 7.4 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|284164601|ref|YP_003402880.1| - 0.036 13.9 0.0 1.1 9.1 0.0 2.4 2 1 0 2 2 2 0 AAA domain AAA PF00004.24 gi|284164601|ref|YP_003402880.1| - 0.053 13.7 0.0 0.35 11.0 0.0 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.18 gi|284164601|ref|YP_003402880.1| - 0.062 13.2 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_10 PF12846.2 gi|284164601|ref|YP_003402880.1| - 0.09 12.1 0.0 0.21 10.9 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain SbcCD_C PF13558.1 gi|284164601|ref|YP_003402880.1| - 0.11 12.3 0.0 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_17 PF13207.1 gi|284164601|ref|YP_003402880.1| - 0.17 12.6 1.0 0.41 11.4 0.7 2.0 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|284164601|ref|YP_003402880.1| - 0.22 11.4 0.9 0.49 10.3 0.6 1.9 1 1 0 1 1 1 0 AAA ATPase domain BPD_transp_2 PF02653.11 gi|284164602|ref|YP_003402881.1| - 8.3e-38 129.8 29.5 8.3e-38 129.8 20.4 1.6 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|284164603|ref|YP_003402882.1| - 6.2e-32 110.6 42.7 7.5e-32 110.3 29.6 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Peripla_BP_6 PF13458.1 gi|284164604|ref|YP_003402883.1| - 6.2e-47 160.6 1.3 7.6e-47 160.3 0.9 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.1 gi|284164604|ref|YP_003402883.1| - 2.2e-24 85.8 0.1 4.1e-24 85.0 0.1 1.3 1 1 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.23 gi|284164604|ref|YP_003402883.1| - 4.1e-21 75.1 0.5 7.5e-21 74.2 0.4 1.3 1 1 0 1 1 1 1 Receptor family ligand binding region TAT_signal PF10518.4 gi|284164604|ref|YP_003402883.1| - 0.027 14.4 5.2 0.057 13.4 3.6 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Lactamase_B PF00753.22 gi|284164605|ref|YP_003402884.1| - 2.7e-27 95.7 7.4 2.7e-27 95.7 5.1 1.9 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|284164605|ref|YP_003402884.1| - 1.1e-05 25.1 1.5 1.5e-05 24.6 0.1 2.0 1 1 1 2 2 2 1 Beta-lactamase superfamily domain RbsD_FucU PF05025.8 gi|284164605|ref|YP_003402884.1| - 0.037 14.3 0.0 1.3 9.3 0.0 2.3 2 0 0 2 2 2 0 RbsD / FucU transport protein family HrpE PF06188.7 gi|284164605|ref|YP_003402884.1| - 0.097 12.4 0.0 0.27 10.9 0.0 1.6 2 0 0 2 2 2 0 HrpE/YscL/FliH and V-type ATPase subunit E GatB_N PF02934.10 gi|284164606|ref|YP_003402885.1| - 3.3e-111 370.7 0.0 5.2e-111 370.1 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|284164606|ref|YP_003402885.1| - 4.9e-41 139.9 0.0 8.6e-41 139.1 0.0 1.4 1 0 0 1 1 1 1 GatB domain HTH_10 PF04967.7 gi|284164608|ref|YP_003402887.1| - 6.9e-20 70.3 0.1 1.2e-19 69.6 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_11 PF08279.7 gi|284164608|ref|YP_003402887.1| - 0.0084 15.7 0.0 0.019 14.6 0.0 1.5 1 0 0 1 1 1 1 HTH domain Sigma70_r4 PF04545.11 gi|284164608|ref|YP_003402887.1| - 0.012 14.9 0.0 0.029 13.6 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_20 PF12840.2 gi|284164608|ref|YP_003402887.1| - 0.072 12.9 0.1 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain PQQ_2 PF13360.1 gi|284164609|ref|YP_003402888.1| - 9.1e-32 110.4 3.5 3.3e-15 56.2 0.4 4.1 1 1 3 4 4 4 4 PQQ-like domain PQQ PF01011.16 gi|284164609|ref|YP_003402888.1| - 3.8e-12 45.0 7.5 0.007 15.8 0.0 7.3 8 0 0 8 8 8 4 PQQ enzyme repeat PQQ_3 PF13570.1 gi|284164609|ref|YP_003402888.1| - 5.7e-09 35.9 17.4 0.043 14.1 0.1 7.6 7 2 0 7 7 7 3 PQQ-like domain MsyB PF13984.1 gi|284164609|ref|YP_003402888.1| - 0.093 12.7 0.9 0.58 10.2 0.1 2.4 3 0 0 3 3 3 0 MsyB protein AMP-binding PF00501.23 gi|284164610|ref|YP_003402889.1| - 2e-79 266.9 0.0 2.5e-79 266.6 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|284164610|ref|YP_003402889.1| - 1.5e-17 64.2 0.1 3.1e-17 63.2 0.1 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain adh_short PF00106.20 gi|284164611|ref|YP_003402890.1| - 1.4e-19 70.6 0.1 1.9e-19 70.1 0.1 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|284164611|ref|YP_003402890.1| - 4.3e-08 33.2 0.0 5.5e-08 32.8 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Epimerase PF01370.16 gi|284164611|ref|YP_003402890.1| - 3.1e-05 23.5 0.0 4.5e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family KR PF08659.5 gi|284164611|ref|YP_003402890.1| - 0.001 18.8 0.0 0.0013 18.3 0.0 1.4 1 0 0 1 1 1 1 KR domain Eno-Rase_NADH_b PF12242.3 gi|284164611|ref|YP_003402890.1| - 0.0055 16.4 0.1 0.011 15.4 0.0 1.5 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Methyltransf_18 PF12847.2 gi|284164611|ref|YP_003402890.1| - 0.02 15.4 0.1 0.033 14.7 0.1 1.3 1 0 0 1 1 1 0 Methyltransferase domain DUF3969 PF13108.1 gi|284164611|ref|YP_003402890.1| - 0.047 13.3 0.2 0.083 12.5 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3969) Polysacc_synt_2 PF02719.10 gi|284164611|ref|YP_003402890.1| - 0.079 11.8 0.0 0.15 10.9 0.0 1.4 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein 3HCDH_N PF02737.13 gi|284164611|ref|YP_003402890.1| - 0.15 11.6 0.7 0.32 10.6 0.3 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF3194 PF11419.3 gi|284164611|ref|YP_003402890.1| - 0.17 12.1 1.9 0.36 11.0 1.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3194) HTH_10 PF04967.7 gi|284164612|ref|YP_003402891.1| - 1.1e-15 56.9 0.2 1.7e-15 56.2 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|284164612|ref|YP_003402891.1| - 0.059 13.0 0.2 0.48 10.1 0.0 2.5 3 0 0 3 3 3 0 MarR family UPF0122 PF04297.9 gi|284164612|ref|YP_003402891.1| - 0.13 12.3 0.0 0.29 11.1 0.0 1.6 1 1 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like PhzC-PhzF PF02567.11 gi|284164613|ref|YP_003402892.1| - 3.5e-71 239.7 0.0 4e-71 239.5 0.0 1.0 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein DAP_epimerase PF01678.14 gi|284164613|ref|YP_003402892.1| - 0.0015 18.4 0.0 0.01 15.7 0.0 2.0 2 0 0 2 2 2 1 Diaminopimelate epimerase Pro_racemase PF05544.6 gi|284164613|ref|YP_003402892.1| - 0.11 11.3 0.0 0.16 10.7 0.0 1.2 1 0 0 1 1 1 0 Proline racemase ThiC PF01964.13 gi|284164614|ref|YP_003402893.1| - 8.4e-196 650.4 0.0 9.6e-196 650.3 0.0 1.0 1 0 0 1 1 1 1 ThiC family zf-ribbon_3 PF13248.1 gi|284164614|ref|YP_003402893.1| - 0.08 12.1 0.3 0.16 11.2 0.2 1.5 1 0 0 1 1 1 0 zinc-ribbon domain Pribosyltran PF00156.22 gi|284164616|ref|YP_003402895.1| - 1.8e-19 69.6 0.0 2.6e-19 69.1 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|284164616|ref|YP_003402895.1| - 0.021 14.0 0.0 0.029 13.5 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase Methyltransf_11 PF08241.7 gi|284164617|ref|YP_003402896.1| - 2.1e-21 76.2 0.0 3.5e-21 75.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|284164617|ref|YP_003402896.1| - 4.1e-18 65.6 0.0 4.9e-18 65.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|284164617|ref|YP_003402896.1| - 4.3e-15 55.9 0.0 7.5e-15 55.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|284164617|ref|YP_003402896.1| - 5.5e-15 55.9 0.1 1e-14 55.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|284164617|ref|YP_003402896.1| - 1.9e-12 46.9 0.0 2.5e-12 46.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|284164617|ref|YP_003402896.1| - 5.8e-11 42.4 0.4 1.4e-10 41.2 0.3 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|284164617|ref|YP_003402896.1| - 1e-09 38.7 0.0 1.5e-09 38.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|284164617|ref|YP_003402896.1| - 2.9e-07 29.8 0.0 4.5e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.15 gi|284164617|ref|YP_003402896.1| - 2.3e-06 26.8 0.0 2.9e-06 26.5 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MetW PF07021.7 gi|284164617|ref|YP_003402896.1| - 2.4e-06 27.0 0.0 3.3e-06 26.6 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_8 PF05148.10 gi|284164617|ref|YP_003402896.1| - 0.0002 21.0 0.0 0.00039 20.1 0.0 1.4 1 1 0 1 1 1 1 Hypothetical methyltransferase MTS PF05175.9 gi|284164617|ref|YP_003402896.1| - 0.0021 17.4 0.0 0.0032 16.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_4 PF02390.12 gi|284164617|ref|YP_003402896.1| - 0.015 14.3 0.0 0.35 9.8 0.0 2.6 3 0 0 3 3 3 0 Putative methyltransferase Methyltransf_29 PF03141.11 gi|284164617|ref|YP_003402896.1| - 0.016 13.5 0.0 0.02 13.2 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase DUF1059 PF06348.6 gi|284164618|ref|YP_003402897.1| - 0.063 13.0 0.3 0.079 12.7 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1059) zf-DNL PF05180.7 gi|284164618|ref|YP_003402897.1| - 0.076 12.7 0.1 0.089 12.5 0.0 1.2 1 0 0 1 1 1 0 DNL zinc finger zf-CSL PF05207.8 gi|284164618|ref|YP_003402897.1| - 0.13 11.7 0.3 0.27 10.7 0.1 1.6 1 1 1 2 2 2 0 CSL zinc finger Spo0M PF07070.6 gi|284164619|ref|YP_003402898.1| - 6.1e-63 212.0 0.0 7.1e-63 211.8 0.0 1.0 1 0 0 1 1 1 1 SpoOM protein MatE PF01554.13 gi|284164620|ref|YP_003402899.1| - 7.6e-58 194.6 31.3 2.7e-31 108.4 7.9 2.3 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|284164620|ref|YP_003402899.1| - 2.1e-13 50.3 17.1 1.8e-12 47.2 3.4 4.2 5 1 1 6 6 6 2 Polysaccharide biosynthesis C-terminal domain MVIN PF03023.9 gi|284164620|ref|YP_003402899.1| - 3.2e-07 29.1 22.2 0.00043 18.8 4.6 2.3 1 1 1 2 2 2 2 MviN-like protein Prim_Zn_Ribbon PF08273.7 gi|284164621|ref|YP_003402900.1| - 0.13 12.3 1.2 0.78 9.8 0.0 2.3 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase ScpA_ScpB PF02616.9 gi|284164622|ref|YP_003402901.1| - 5.2e-25 88.4 0.3 4.9e-24 85.2 0.2 2.4 1 1 0 1 1 1 1 ScpA/B protein SMC_N PF02463.14 gi|284164623|ref|YP_003402902.1| - 2e-47 161.2 62.1 7.7e-47 159.3 43.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.8 gi|284164623|ref|YP_003402902.1| - 2.8e-30 104.7 0.0 9.7e-30 103.0 0.0 2.0 1 0 0 1 1 1 1 SMC proteins Flexible Hinge Domain AAA_13 PF13166.1 gi|284164623|ref|YP_003402902.1| - 1.5e-15 56.7 115.9 3.5e-05 22.4 8.2 7.2 3 2 4 7 7 7 7 AAA domain AAA_21 PF13304.1 gi|284164623|ref|YP_003402902.1| - 5e-14 52.9 0.1 3.4e-07 30.5 0.0 4.7 4 1 0 4 4 3 2 AAA domain Reo_sigmaC PF04582.7 gi|284164623|ref|YP_003402902.1| - 3e-10 39.7 28.9 0.0054 15.9 1.0 6.4 3 2 5 8 8 8 7 Reovirus sigma C capsid protein IncA PF04156.9 gi|284164623|ref|YP_003402902.1| - 5.3e-08 32.6 165.5 0.00032 20.3 21.3 9.1 2 2 7 9 9 9 4 IncA protein AAA_29 PF13555.1 gi|284164623|ref|YP_003402902.1| - 2.1e-07 30.3 0.6 1.4e-06 27.6 0.0 2.2 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|284164623|ref|YP_003402902.1| - 3.1e-07 29.7 0.0 3.1e-07 29.7 0.0 4.7 3 1 0 3 3 1 1 AAA ATPase domain DUF3584 PF12128.3 gi|284164623|ref|YP_003402902.1| - 1.6e-05 22.4 12.9 1.6e-05 22.4 8.9 4.3 2 2 2 4 4 4 4 Protein of unknown function (DUF3584) Myosin_tail_1 PF01576.14 gi|284164623|ref|YP_003402902.1| - 0.00016 19.5 174.9 0.012 13.3 32.2 4.0 2 1 1 4 4 4 3 Myosin tail CENP-F_leu_zip PF10473.4 gi|284164623|ref|YP_003402902.1| - 0.0049 16.7 19.4 0.0049 16.7 13.4 9.1 2 2 6 9 9 8 4 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 GAS PF13851.1 gi|284164623|ref|YP_003402902.1| - 0.0082 15.3 129.1 0.021 14.0 13.4 7.5 3 2 4 8 8 8 5 Growth-arrest specific micro-tubule binding AAA_23 PF13476.1 gi|284164623|ref|YP_003402902.1| - 0.0096 16.2 152.4 2.7e+02 1.7 49.5 8.8 2 2 3 5 5 3 0 AAA domain Spc7 PF08317.6 gi|284164623|ref|YP_003402902.1| - 0.011 14.3 131.3 0.071 11.7 13.6 8.0 2 2 3 6 6 6 0 Spc7 kinetochore protein ATG16 PF08614.6 gi|284164623|ref|YP_003402902.1| - 0.012 15.4 134.7 0.037 13.8 3.0 9.3 3 2 6 9 9 9 0 Autophagy protein 16 (ATG16) Baculo_PEP_C PF04513.7 gi|284164623|ref|YP_003402902.1| - 0.015 15.1 33.0 1.9 8.2 0.1 7.2 2 2 3 6 6 6 0 Baculovirus polyhedron envelope protein, PEP, C terminus Laminin_II PF06009.7 gi|284164623|ref|YP_003402902.1| - 0.074 12.8 73.8 0.076 12.7 4.2 8.5 4 2 6 10 10 10 0 Laminin Domain II Mnd1 PF03962.10 gi|284164623|ref|YP_003402902.1| - 0.086 12.4 129.0 0.034 13.8 9.0 8.9 2 2 6 8 8 7 0 Mnd1 family HR1 PF02185.11 gi|284164623|ref|YP_003402902.1| - 0.089 12.5 0.0 0.089 12.5 0.0 11.8 6 3 6 12 12 11 0 Hr1 repeat FliD_N PF02465.13 gi|284164623|ref|YP_003402902.1| - 0.12 12.7 26.4 0.29 11.4 0.3 8.9 4 2 8 12 12 12 0 Flagellar hook-associated protein 2 N-terminus APG6 PF04111.7 gi|284164623|ref|YP_003402902.1| - 0.27 10.2 154.0 0.33 9.9 12.9 7.4 3 2 3 7 7 7 0 Autophagy protein Apg6 AAA_22 PF13401.1 gi|284164623|ref|YP_003402902.1| - 0.51 10.4 3.4 2.8 8.1 0.0 3.8 2 2 1 3 3 3 0 AAA domain ABC_tran PF00005.22 gi|284164623|ref|YP_003402902.1| - 0.66 10.2 0.0 0.66 10.2 0.0 6.2 4 2 0 4 4 2 0 ABC transporter EzrA PF06160.7 gi|284164623|ref|YP_003402902.1| - 0.9 7.6 113.1 0.034 12.3 12.5 4.7 2 2 2 4 4 4 0 Septation ring formation regulator, EzrA NPV_P10 PF05531.7 gi|284164623|ref|YP_003402902.1| - 1.9 8.7 56.8 0.71 10.1 1.4 10.8 6 3 4 11 11 10 0 Nucleopolyhedrovirus P10 protein TPR_MLP1_2 PF07926.7 gi|284164623|ref|YP_003402902.1| - 2 8.1 138.7 0.026 14.2 14.0 8.0 3 2 4 7 7 6 0 TPR/MLP1/MLP2-like protein ERM PF00769.14 gi|284164623|ref|YP_003402902.1| - 3.6 7.0 166.5 0.11 12.0 20.4 6.4 2 2 3 6 6 5 0 Ezrin/radixin/moesin family WEMBL PF05701.6 gi|284164623|ref|YP_003402902.1| - 5.8 5.2 139.9 0.2 10.1 46.2 3.1 2 1 1 3 3 3 0 Weak chloroplast movement under blue light AAA_27 PF13514.1 gi|284164623|ref|YP_003402902.1| - 8.5 3.9 135.7 2.6 5.5 29.1 4.2 2 2 1 3 3 3 0 AAA domain SAP PF02037.22 gi|284164623|ref|YP_003402902.1| - 8.6 5.9 8.4 2.2 7.8 0.1 3.6 3 0 0 3 3 3 0 SAP domain SlyX PF04102.7 gi|284164624|ref|YP_003402903.1| - 4.6e-05 23.7 2.8 6.5e-05 23.2 1.9 1.6 1 1 0 1 1 1 1 SlyX Tropomyosin PF00261.15 gi|284164624|ref|YP_003402903.1| - 0.0001 21.5 1.4 0.0001 21.5 1.0 1.7 2 0 0 2 2 2 1 Tropomyosin Striatin PF08232.7 gi|284164624|ref|YP_003402903.1| - 0.024 14.9 1.3 0.03 14.6 0.9 1.1 1 0 0 1 1 1 0 Striatin family Tektin PF03148.9 gi|284164624|ref|YP_003402903.1| - 0.036 12.6 0.2 0.046 12.2 0.1 1.1 1 0 0 1 1 1 0 Tektin family FlaC_arch PF05377.6 gi|284164624|ref|YP_003402903.1| - 0.072 12.9 1.4 0.12 12.3 1.0 1.3 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) DUF2730 PF10805.3 gi|284164624|ref|YP_003402903.1| - 0.083 12.6 0.7 0.12 12.1 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) PspB PF06667.7 gi|284164624|ref|YP_003402903.1| - 0.091 12.7 1.0 0.24 11.3 0.7 1.7 1 1 0 1 1 1 0 Phage shock protein B IFP_35_N PF07334.8 gi|284164624|ref|YP_003402903.1| - 0.13 12.2 0.1 0.2 11.6 0.0 1.4 1 0 0 1 1 1 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus bZIP_1 PF00170.16 gi|284164624|ref|YP_003402903.1| - 0.24 11.3 1.0 0.36 10.8 0.7 1.3 1 0 0 1 1 1 0 bZIP transcription factor ATG16 PF08614.6 gi|284164624|ref|YP_003402903.1| - 0.27 11.0 1.9 0.28 10.9 0.5 1.5 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) Pox_A_type_inc PF04508.7 gi|284164624|ref|YP_003402903.1| - 0.64 9.9 5.3 0.63 9.9 0.9 2.5 2 1 0 2 2 2 0 Viral A-type inclusion protein repeat TMF_DNA_bd PF12329.3 gi|284164624|ref|YP_003402903.1| - 0.73 9.6 5.6 0.12 12.2 1.2 1.7 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding DUF2360 PF10152.4 gi|284164624|ref|YP_003402903.1| - 1.3 9.3 5.2 1.5 9.0 3.6 1.1 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein (DUF2360) Rab5-bind PF09311.6 gi|284164624|ref|YP_003402903.1| - 1.3 8.8 7.5 2.3 8.0 5.2 1.5 1 1 0 1 1 1 0 Rabaptin-like protein TFIIS_C PF01096.13 gi|284164625|ref|YP_003402904.1| - 1.1e-18 66.5 4.7 1.1e-18 66.5 3.3 3.0 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.11 gi|284164625|ref|YP_003402904.1| - 1.6e-08 34.1 1.2 1.6e-08 34.1 0.8 2.8 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit DZR PF12773.2 gi|284164625|ref|YP_003402904.1| - 1.7e-07 30.9 6.1 0.00081 19.1 0.4 2.3 2 0 0 2 2 2 2 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|284164625|ref|YP_003402904.1| - 7.5e-05 21.9 9.2 0.0012 18.1 0.6 3.7 3 1 0 3 3 3 1 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.2 gi|284164625|ref|YP_003402904.1| - 0.00019 21.1 10.1 0.019 14.7 1.6 2.7 2 2 0 2 2 2 2 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|284164625|ref|YP_003402904.1| - 0.00031 20.3 10.8 0.014 15.0 0.6 2.5 2 1 0 2 2 2 2 Putative transposase DNA-binding domain DUF2387 PF09526.5 gi|284164625|ref|YP_003402904.1| - 0.00094 19.0 6.1 0.047 13.6 1.0 2.4 2 0 0 2 2 2 2 Probable metal-binding protein (DUF2387) zf-ribbon_3 PF13248.1 gi|284164625|ref|YP_003402904.1| - 0.0013 17.8 9.2 0.33 10.2 0.1 3.8 4 0 0 4 4 4 2 zinc-ribbon domain RRN7 PF11781.3 gi|284164625|ref|YP_003402904.1| - 0.01 15.3 10.2 12 5.5 0.1 4.1 3 1 0 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 FdhE PF04216.7 gi|284164625|ref|YP_003402904.1| - 0.013 15.2 0.8 0.013 15.2 0.5 2.2 1 1 0 2 2 2 0 Protein involved in formate dehydrogenase formation PhnA_Zn_Ribbon PF08274.7 gi|284164625|ref|YP_003402904.1| - 0.017 14.9 10.2 0.041 13.6 1.0 3.6 3 1 0 3 3 3 0 PhnA Zinc-Ribbon HypA PF01155.14 gi|284164625|ref|YP_003402904.1| - 0.04 13.5 9.2 0.34 10.5 0.4 3.0 1 1 2 3 3 3 0 Hydrogenase expression/synthesis hypA family ArfGap PF01412.13 gi|284164625|ref|YP_003402904.1| - 0.053 13.3 0.3 0.053 13.3 0.2 2.1 2 1 0 2 2 2 0 Putative GTPase activating protein for Arf Prok-RING_1 PF14446.1 gi|284164625|ref|YP_003402904.1| - 0.11 12.2 8.0 0.57 9.9 0.6 3.1 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 Nudix_N_2 PF14803.1 gi|284164625|ref|YP_003402904.1| - 0.19 11.4 14.1 3 7.5 0.0 4.0 3 1 0 3 3 3 0 Nudix N-terminal DUF3797 PF12677.2 gi|284164625|ref|YP_003402904.1| - 0.27 10.8 0.0 0.27 10.8 0.0 2.8 3 1 1 4 4 3 0 Domain of unknown function (DUF3797) zf-UBP PF02148.14 gi|284164625|ref|YP_003402904.1| - 0.36 10.9 5.8 2.1 8.5 0.3 2.5 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein zf-ISL3 PF14690.1 gi|284164625|ref|YP_003402904.1| - 0.4 10.7 6.5 0.65 10.0 0.1 3.4 4 0 0 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_2 PF13240.1 gi|284164625|ref|YP_003402904.1| - 0.44 10.0 0.2 0.44 10.0 0.1 3.9 3 1 0 3 3 3 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|284164625|ref|YP_003402904.1| - 0.49 10.7 11.1 0.57 10.5 0.6 2.8 2 1 0 2 2 2 0 Restriction alleviation protein Lar zf-IS66 PF13005.2 gi|284164625|ref|YP_003402904.1| - 0.55 10.2 7.3 11 6.1 0.1 3.9 4 0 0 4 4 4 0 zinc-finger binding domain of transposase IS66 zf-RING_4 PF14570.1 gi|284164625|ref|YP_003402904.1| - 0.6 9.7 9.7 6 6.5 0.1 3.2 3 0 0 3 3 3 0 RING/Ubox like zinc-binding domain zf-C4pol PF14260.1 gi|284164625|ref|YP_003402904.1| - 0.71 9.9 3.3 14 5.7 2.3 2.5 1 1 0 1 1 1 0 C4-type zinc-finger of DNA polymerase delta Ribosomal_L37ae PF01780.14 gi|284164625|ref|YP_003402904.1| - 1.1 9.1 6.3 0.45 10.3 0.3 2.6 1 1 1 2 2 2 0 Ribosomal L37ae protein family zf-RING_5 PF14634.1 gi|284164625|ref|YP_003402904.1| - 1.2 8.8 9.8 1.9 8.2 1.5 3.0 1 1 1 2 2 2 0 zinc-RING finger domain PolC_DP2 PF03833.8 gi|284164625|ref|YP_003402904.1| - 1.3 6.6 6.7 0.83 7.2 0.7 2.0 1 1 1 2 2 2 0 DNA polymerase II large subunit DP2 DNA_RNApol_7kD PF03604.8 gi|284164625|ref|YP_003402904.1| - 1.5 8.3 10.9 25 4.4 0.1 3.7 3 1 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit Auto_anti-p27 PF06677.7 gi|284164625|ref|YP_003402904.1| - 2.6 7.8 14.1 1.2 9.0 1.1 2.6 3 0 0 3 3 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) IBR PF01485.16 gi|284164625|ref|YP_003402904.1| - 3.7 7.4 10.2 17 5.4 0.1 3.0 2 1 0 2 2 2 0 IBR domain Terminase_GpA PF05876.7 gi|284164625|ref|YP_003402904.1| - 4 5.6 7.5 0.85 7.9 3.3 1.3 1 1 0 1 1 1 0 Phage terminase large subunit (GpA) zinc-ribbons_6 PF07191.7 gi|284164625|ref|YP_003402904.1| - 5.9 6.7 9.1 13 5.6 0.3 2.8 2 1 1 3 3 3 0 zinc-ribbons TerY-C PF15616.1 gi|284164625|ref|YP_003402904.1| - 6.3 6.7 7.4 0.3 11.0 0.5 1.9 1 1 1 2 2 2 0 TerY-C metal binding domain PGM_PMM_I PF02878.11 gi|284164626|ref|YP_003402905.1| - 3.3e-32 110.8 0.0 7.4e-32 109.7 0.0 1.6 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|284164626|ref|YP_003402905.1| - 2.7e-21 75.8 0.4 6.3e-21 74.6 0.3 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|284164626|ref|YP_003402905.1| - 1.5e-18 66.8 0.0 2.9e-18 65.9 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|284164626|ref|YP_003402905.1| - 7.4e-14 51.5 2.8 8e-14 51.3 0.4 2.3 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain DHH PF01368.15 gi|284164627|ref|YP_003402906.1| - 3.8e-16 59.0 0.0 5.7e-16 58.4 0.0 1.2 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|284164627|ref|YP_003402906.1| - 1.7e-09 37.2 0.3 3.9e-09 36.0 0.2 1.6 1 0 0 1 1 1 1 DHHA1 domain NAD_binding_10 PF13460.1 gi|284164628|ref|YP_003402907.1| - 3.6e-19 69.4 0.2 5.5e-19 68.8 0.2 1.3 1 0 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|284164628|ref|YP_003402907.1| - 2.2e-13 50.1 0.1 5.5e-13 48.8 0.0 1.6 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|284164628|ref|YP_003402907.1| - 9.3e-10 37.6 0.0 2e-08 33.3 0.0 2.1 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family TrkA_N PF02254.13 gi|284164628|ref|YP_003402907.1| - 8.6e-09 35.4 0.4 1.6e-08 34.5 0.3 1.5 1 0 0 1 1 1 1 TrkA-N domain UDPG_MGDP_dh_N PF03721.9 gi|284164628|ref|YP_003402907.1| - 2.5e-05 23.7 0.1 4.3e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain F420_oxidored PF03807.12 gi|284164628|ref|YP_003402907.1| - 6.4e-05 23.2 0.3 0.00015 22.1 0.2 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.11 gi|284164628|ref|YP_003402907.1| - 0.00026 20.4 0.1 0.0005 19.5 0.1 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA RmlD_sub_bind PF04321.12 gi|284164628|ref|YP_003402907.1| - 0.00061 18.7 0.3 0.00095 18.1 0.2 1.5 1 1 0 1 1 1 1 RmlD substrate binding domain DUF1731 PF08338.6 gi|284164628|ref|YP_003402907.1| - 0.0014 18.1 0.0 0.0032 16.9 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1731) NAD_binding_2 PF03446.10 gi|284164628|ref|YP_003402907.1| - 0.0045 16.8 0.1 0.0077 16.0 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|284164628|ref|YP_003402907.1| - 0.013 14.9 0.1 0.022 14.1 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain GFO_IDH_MocA PF01408.17 gi|284164628|ref|YP_003402907.1| - 0.035 14.6 0.9 0.074 13.5 0.1 1.9 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold adh_short PF00106.20 gi|284164628|ref|YP_003402907.1| - 0.096 12.6 2.4 0.18 11.7 0.8 2.0 1 1 0 1 1 1 0 short chain dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|284164628|ref|YP_003402907.1| - 0.16 11.7 0.0 0.27 10.9 0.0 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Tubulin PF00091.20 gi|284164630|ref|YP_003402909.1| - 6.5e-24 84.9 0.8 4.6e-23 82.1 0.3 2.3 2 1 0 2 2 2 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.1 gi|284164630|ref|YP_003402909.1| - 2e-05 23.7 0.7 3.9e-05 22.7 0.0 1.8 2 0 0 2 2 2 1 Tubulin like 2-Hacid_dh_C PF02826.14 gi|284164630|ref|YP_003402909.1| - 0.068 12.3 0.3 0.37 9.9 0.0 2.1 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Dispanin PF04505.7 gi|284164630|ref|YP_003402909.1| - 0.14 11.6 0.2 0.26 10.8 0.1 1.4 1 0 0 1 1 1 0 Interferon-induced transmembrane protein Reo_sigmaC PF04582.7 gi|284164631|ref|YP_003402910.1| - 0.57 9.3 5.7 0.78 8.8 0.9 2.1 1 1 1 2 2 2 0 Reovirus sigma C capsid protein Laminin_II PF06009.7 gi|284164631|ref|YP_003402910.1| - 4 7.2 33.1 0.59 9.8 6.0 4.0 1 1 2 4 4 4 0 Laminin Domain II AATF-Che1 PF13339.1 gi|284164631|ref|YP_003402910.1| - 9.1 6.4 44.2 0.22 11.6 7.5 3.7 1 1 3 4 4 4 0 Apoptosis antagonizing transcription factor ATPgrasp_Ter PF15632.1 gi|284164632|ref|YP_003402911.1| - 1.1e-21 76.9 0.0 5.4e-21 74.6 0.0 1.8 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_4 PF13535.1 gi|284164632|ref|YP_003402911.1| - 6.3e-15 55.3 0.0 1.3e-14 54.3 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|284164632|ref|YP_003402911.1| - 0.0011 18.9 0.0 0.0098 15.7 0.0 2.1 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|284164632|ref|YP_003402911.1| - 0.01 15.1 0.0 0.017 14.3 0.0 1.3 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain Peptidase_S49 PF01343.13 gi|284164633|ref|YP_003402912.1| - 1.8e-39 134.9 0.0 2.5e-39 134.4 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S49 SDH_sah PF01972.11 gi|284164633|ref|YP_003402912.1| - 0.035 12.8 0.0 0.05 12.3 0.0 1.2 1 0 0 1 1 1 0 Serine dehydrogenase proteinase CLP_protease PF00574.18 gi|284164633|ref|YP_003402912.1| - 0.18 11.4 0.0 0.33 10.6 0.0 1.4 1 0 0 1 1 1 0 Clp protease SHOCT PF09851.4 gi|284164633|ref|YP_003402912.1| - 0.34 10.4 4.4 0.53 9.8 1.9 2.2 2 0 0 2 2 2 0 Short C-terminal domain DUF373 PF04123.8 gi|284164634|ref|YP_003402913.1| - 1.9e-110 369.1 11.0 2.2e-110 368.9 7.6 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF373) ATP_bind_4 PF01902.12 gi|284164635|ref|YP_003402914.1| - 1.9e-59 200.6 0.0 3.5e-59 199.8 0.0 1.4 1 1 0 1 1 1 1 ATP-binding region QueC PF06508.8 gi|284164635|ref|YP_003402914.1| - 0.03 13.6 0.0 0.1 11.8 0.0 1.8 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC DUF892 PF05974.7 gi|284164636|ref|YP_003402915.1| - 0.024 14.4 0.1 0.028 14.2 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF892) TAT_signal PF10518.4 gi|284164637|ref|YP_003402916.1| - 0.035 14.0 4.1 0.068 13.2 2.8 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF1213 PF06740.7 gi|284164637|ref|YP_003402916.1| - 1.2 9.3 4.5 0.55 10.3 0.7 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1213) NTP_transferase PF00483.18 gi|284164639|ref|YP_003402918.1| - 1.4e-37 129.3 0.0 1.9e-37 128.8 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|284164639|ref|YP_003402918.1| - 8.4e-13 48.7 0.0 8.5e-13 48.6 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|284164639|ref|YP_003402918.1| - 0.0073 15.7 2.7 0.16 11.5 0.0 3.1 4 0 0 4 4 4 1 Bacterial transferase hexapeptide (six repeats) IspD PF01128.14 gi|284164639|ref|YP_003402918.1| - 0.012 15.1 0.0 0.019 14.5 0.0 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase HTH_20 PF12840.2 gi|284164640|ref|YP_003402919.1| - 0.00049 19.8 0.3 0.00085 19.0 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r3 PF04539.11 gi|284164640|ref|YP_003402919.1| - 0.014 15.2 0.1 0.02 14.7 0.1 1.3 1 0 0 1 1 1 0 Sigma-70 region 3 MarR_2 PF12802.2 gi|284164640|ref|YP_003402919.1| - 0.023 14.3 0.2 0.033 13.8 0.1 1.3 1 0 0 1 1 1 0 MarR family Zn-ribbon_8 PF09723.5 gi|284164640|ref|YP_003402919.1| - 0.061 13.2 2.5 0.16 11.9 1.7 1.8 1 1 0 1 1 1 0 Zinc ribbon domain HTH_5 PF01022.15 gi|284164640|ref|YP_003402919.1| - 0.13 11.9 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family zf-trcl PF13451.1 gi|284164640|ref|YP_003402919.1| - 0.88 9.2 5.8 0.76 9.4 0.3 2.2 1 1 1 2 2 2 0 Probable zinc-binding domain PhnA_Zn_Ribbon PF08274.7 gi|284164640|ref|YP_003402919.1| - 1.1 9.0 3.7 1.1 9.0 0.6 2.0 2 0 0 2 2 2 0 PhnA Zinc-Ribbon FBPase_glpX PF03320.8 gi|284164641|ref|YP_003402920.1| - 0.11 11.0 0.0 0.14 10.8 0.0 1.1 1 0 0 1 1 1 0 Bacterial fructose-1,6-bisphosphatase, glpX-encoded Rieske PF00355.21 gi|284164642|ref|YP_003402921.1| - 2.7e-06 26.8 0.9 4.5e-06 26.1 0.6 1.4 1 1 0 1 1 1 1 Rieske [2Fe-2S] domain Saccharop_dh PF03435.13 gi|284164643|ref|YP_003402922.1| - 7.5e-23 81.1 0.0 1.7e-22 79.9 0.0 1.4 1 1 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_10 PF13460.1 gi|284164643|ref|YP_003402922.1| - 3.3e-11 43.5 0.0 7e-11 42.4 0.0 1.5 1 0 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|284164643|ref|YP_003402922.1| - 0.001 18.5 0.0 0.0017 17.8 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family adh_short PF00106.20 gi|284164643|ref|YP_003402922.1| - 0.05 13.5 2.0 0.14 12.0 0.0 2.3 2 0 0 2 2 2 0 short chain dehydrogenase MatE PF01554.13 gi|284164644|ref|YP_003402923.1| - 4e-41 140.3 18.5 4.4e-22 78.4 4.0 2.6 2 1 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|284164644|ref|YP_003402923.1| - 2.3e-06 27.4 3.3 2.3e-06 27.4 2.3 4.1 3 2 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain COX2-transmemb PF09125.5 gi|284164645|ref|YP_003402924.1| - 0.086 12.4 1.7 0.12 11.9 1.2 1.2 1 0 0 1 1 1 0 Cytochrome C oxidase subunit II, transmembrane Aminotran_4 PF01063.14 gi|284164646|ref|YP_003402925.1| - 4.3e-46 157.2 0.0 5.3e-46 156.9 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class IV GATase PF00117.23 gi|284164647|ref|YP_003402926.1| - 5e-45 153.3 0.0 6.3e-45 152.9 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|284164647|ref|YP_003402926.1| - 8.2e-11 41.7 0.0 1.3e-10 41.1 0.0 1.3 1 0 0 1 1 1 1 Peptidase C26 Chorismate_bind PF00425.13 gi|284164648|ref|YP_003402927.1| - 8.7e-102 339.8 0.0 1.2e-101 339.3 0.0 1.2 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|284164648|ref|YP_003402927.1| - 3.1e-15 56.4 0.1 1.3e-14 54.4 0.0 2.1 3 0 0 3 3 3 1 Anthranilate synthase component I, N terminal region DUF1488 PF07369.6 gi|284164648|ref|YP_003402927.1| - 0.09 12.6 0.0 0.26 11.1 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1488) HHH_5 PF14520.1 gi|284164649|ref|YP_003402928.1| - 9.3e-09 35.3 0.3 9.3e-09 35.3 0.2 1.9 2 0 0 2 2 2 1 Helix-hairpin-helix domain DUF4332 PF14229.1 gi|284164649|ref|YP_003402928.1| - 1.7e-05 24.7 0.0 5.7e-05 23.0 0.0 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4332) DNA_pol_lambd_f PF10391.4 gi|284164649|ref|YP_003402928.1| - 0.0066 15.9 0.0 0.012 15.1 0.0 1.4 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda Cdd1 PF11731.3 gi|284164649|ref|YP_003402928.1| - 0.016 15.1 0.0 0.028 14.3 0.0 1.4 1 0 0 1 1 1 0 Pathogenicity locus IMS_HHH PF11798.3 gi|284164649|ref|YP_003402928.1| - 0.1 12.7 0.0 0.24 11.5 0.0 1.6 2 0 0 2 2 2 0 IMS family HHH motif Shikimate_dh_N PF08501.6 gi|284164650|ref|YP_003402929.1| - 5.8e-27 93.5 0.0 1.1e-26 92.6 0.0 1.5 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.15 gi|284164650|ref|YP_003402929.1| - 2.2e-13 50.4 0.0 3.3e-13 49.9 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase THF_DHG_CYH_C PF02882.14 gi|284164650|ref|YP_003402929.1| - 5.1e-05 22.3 0.1 0.00043 19.4 0.0 2.0 1 1 1 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NAD_binding_10 PF13460.1 gi|284164650|ref|YP_003402929.1| - 0.00014 21.9 1.9 0.00028 20.9 1.3 1.6 1 0 0 1 1 1 1 NADH(P)-binding F420_oxidored PF03807.12 gi|284164650|ref|YP_003402929.1| - 0.00073 19.9 0.4 0.0014 18.9 0.3 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|284164650|ref|YP_003402929.1| - 0.0009 18.4 0.1 0.0015 17.7 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|284164650|ref|YP_003402929.1| - 0.001 18.4 0.3 0.0019 17.5 0.2 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain ApbA PF02558.11 gi|284164650|ref|YP_003402929.1| - 0.0088 15.5 0.2 0.014 14.8 0.1 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Saccharop_dh PF03435.13 gi|284164650|ref|YP_003402929.1| - 0.011 14.7 0.8 0.015 14.2 0.5 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase TrkA_N PF02254.13 gi|284164650|ref|YP_003402929.1| - 0.018 15.0 0.4 0.027 14.4 0.3 1.3 1 0 0 1 1 1 0 TrkA-N domain NAD_Gly3P_dh_N PF01210.18 gi|284164650|ref|YP_003402929.1| - 0.064 12.9 0.1 0.11 12.2 0.1 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|284164650|ref|YP_003402929.1| - 0.07 12.7 0.8 0.1 12.2 0.5 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|284164650|ref|YP_003402929.1| - 0.07 13.3 0.1 0.12 12.6 0.1 1.3 1 0 0 1 1 1 0 Putative NAD(P)-binding Pyr_redox_2 PF07992.9 gi|284164650|ref|YP_003402929.1| - 0.084 12.7 0.2 0.12 12.2 0.1 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase AdoHcyase_NAD PF00670.16 gi|284164650|ref|YP_003402929.1| - 0.19 11.5 0.9 0.36 10.6 0.6 1.4 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain GIDA PF01134.17 gi|284164650|ref|YP_003402929.1| - 0.65 8.7 3.1 0.88 8.3 2.1 1.1 1 0 0 1 1 1 0 Glucose inhibited division protein A ThiF PF00899.16 gi|284164650|ref|YP_003402929.1| - 3.4 7.4 5.6 3.3 7.5 2.5 1.9 1 1 1 2 2 2 0 ThiF family Na_Ca_ex PF01699.19 gi|284164651|ref|YP_003402930.1| - 4.5e-48 162.4 36.4 2.8e-27 95.0 10.0 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Antimicrobial17 PF08129.6 gi|284164651|ref|YP_003402930.1| - 0.17 11.7 0.2 0.36 10.6 0.2 1.5 1 0 0 1 1 1 0 Alpha/beta enterocin family Regulator_TrmB PF11495.3 gi|284164652|ref|YP_003402931.1| - 0.022 13.7 0.0 0.043 12.7 0.0 1.5 1 0 0 1 1 1 0 Archaeal transcriptional regulator TrmB PAS_9 PF13426.1 gi|284164653|ref|YP_003402932.1| - 2.3e-50 169.2 0.0 1.3e-16 60.8 0.0 3.9 3 1 0 3 3 3 3 PAS domain PAS PF00989.19 gi|284164653|ref|YP_003402932.1| - 4.3e-43 145.6 0.0 6.9e-14 51.6 0.0 3.4 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.5 gi|284164653|ref|YP_003402932.1| - 1.4e-37 128.0 13.1 6.1e-15 55.1 0.1 4.9 5 0 0 5 5 4 3 PAS fold PAS_3 PF08447.6 gi|284164653|ref|YP_003402932.1| - 1.1e-28 99.1 0.4 3.5e-10 39.8 0.0 3.5 3 0 0 3 3 3 3 PAS fold HTH_10 PF04967.7 gi|284164653|ref|YP_003402932.1| - 1.1e-16 60.1 0.3 8.6e-16 57.2 0.0 2.3 2 0 0 2 2 2 1 HTH DNA binding domain PAS_8 PF13188.1 gi|284164653|ref|YP_003402932.1| - 1.7e-13 49.8 0.0 0.00015 21.4 0.0 4.0 4 0 0 4 4 3 3 PAS domain GAF_2 PF13185.1 gi|284164653|ref|YP_003402932.1| - 1.6e-11 44.9 0.9 4.2e-11 43.5 0.2 2.1 2 0 0 2 2 2 1 GAF domain PAS_7 PF12860.2 gi|284164653|ref|YP_003402932.1| - 1.6e-11 44.2 0.0 2.1e-05 24.4 0.0 3.9 3 0 0 3 3 3 2 PAS fold GAF_3 PF13492.1 gi|284164653|ref|YP_003402932.1| - 5.6e-08 32.9 0.0 4.4e-07 30.0 0.0 2.6 3 0 0 3 3 2 1 GAF domain GAF PF01590.21 gi|284164653|ref|YP_003402932.1| - 4.9e-06 26.7 0.0 1.6e-05 25.1 0.0 2.0 1 1 0 1 1 1 1 GAF domain HTH_20 PF12840.2 gi|284164653|ref|YP_003402932.1| - 0.002 17.8 0.0 0.0061 16.3 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|284164653|ref|YP_003402932.1| - 0.011 14.9 0.5 0.15 11.3 0.0 2.9 2 1 0 2 2 2 0 Sigma-70, region 4 GerE PF00196.14 gi|284164653|ref|YP_003402932.1| - 0.021 14.1 0.0 2.4 7.5 0.0 2.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.7 gi|284164653|ref|YP_003402932.1| - 0.026 13.9 0.1 9.6 5.7 0.0 2.5 2 0 0 2 2 2 0 Sigma-70, region 4 DUF134 PF02001.11 gi|284164653|ref|YP_003402932.1| - 0.031 14.1 0.2 0.59 10.0 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function DUF134 MarR_2 PF12802.2 gi|284164653|ref|YP_003402932.1| - 0.031 13.9 0.0 0.076 12.6 0.0 1.6 1 0 0 1 1 1 0 MarR family tRNA_deacylase PF04414.7 gi|284164654|ref|YP_003402933.1| - 1.3e-60 204.1 0.0 1.9e-60 203.6 0.0 1.2 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase FtsZ_C PF12327.3 gi|284164655|ref|YP_003402934.1| - 1.9e-36 124.0 2.0 1.9e-36 124.0 1.4 2.1 2 0 0 2 2 2 1 FtsZ family, C-terminal domain Tubulin PF00091.20 gi|284164655|ref|YP_003402934.1| - 2e-36 125.8 1.0 1e-35 123.5 0.3 2.3 2 1 0 2 2 2 1 Tubulin/FtsZ family, GTPase domain Rubrerythrin PF02915.12 gi|284164656|ref|YP_003402935.1| - 2.6e-05 24.5 0.9 0.00018 21.8 0.3 2.1 2 0 0 2 2 2 1 Rubrerythrin TPR_7 PF13176.1 gi|284164656|ref|YP_003402935.1| - 0.075 12.8 2.2 0.31 10.9 0.2 3.0 2 0 0 2 2 2 0 Tetratricopeptide repeat GDYXXLXY PF14345.1 gi|284164656|ref|YP_003402935.1| - 0.093 12.5 0.2 0.23 11.3 0.1 1.6 1 1 1 2 2 2 0 GDYXXLXY protein TPR_6 PF13174.1 gi|284164656|ref|YP_003402935.1| - 0.28 11.7 2.3 1.6 9.3 0.1 3.3 3 2 0 3 3 3 0 Tetratricopeptide repeat DinB_2 PF12867.2 gi|284164656|ref|YP_003402935.1| - 1.2 9.5 6.9 3.8 7.8 1.6 3.1 1 1 1 2 2 2 0 DinB superfamily Lactamase_B PF00753.22 gi|284164657|ref|YP_003402936.1| - 6.4e-22 78.1 2.8 1.1e-21 77.3 2.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.15 gi|284164657|ref|YP_003402936.1| - 2.4e-09 37.5 0.0 4.9e-09 36.5 0.0 1.5 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B_2 PF12706.2 gi|284164657|ref|YP_003402936.1| - 0.015 14.8 0.1 0.048 13.1 0.1 1.7 1 1 0 1 1 1 0 Beta-lactamase superfamily domain HTH_30 PF13556.1 gi|284164657|ref|YP_003402936.1| - 0.054 13.0 0.1 0.87 9.2 0.0 2.7 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain Fer2 PF00111.22 gi|284164658|ref|YP_003402937.1| - 6.3e-11 41.8 5.0 9.1e-11 41.3 3.5 1.3 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|284164658|ref|YP_003402937.1| - 0.0072 16.1 0.3 0.0088 15.8 0.2 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Trp_halogenase PF04820.9 gi|284164659|ref|YP_003402938.1| - 6.3e-13 48.1 1.4 2e-08 33.3 0.0 2.2 2 0 0 2 2 2 2 Tryptophan halogenase FAD_binding_2 PF00890.19 gi|284164659|ref|YP_003402938.1| - 4.9e-12 45.4 4.1 3e-07 29.6 0.9 2.7 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.19 gi|284164659|ref|YP_003402938.1| - 8.2e-12 44.6 10.1 7.4e-06 25.1 0.5 2.7 2 1 1 3 3 3 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|284164659|ref|YP_003402938.1| - 8.4e-11 41.5 3.7 1.4e-09 37.5 2.5 2.2 1 1 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|284164659|ref|YP_003402938.1| - 5.3e-09 35.6 10.0 2.8e-05 23.3 2.1 2.6 3 0 0 3 3 3 2 FAD dependent oxidoreductase GIDA PF01134.17 gi|284164659|ref|YP_003402938.1| - 2.2e-08 33.3 0.7 5.7e-08 32.0 0.2 1.8 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|284164659|ref|YP_003402938.1| - 4.3e-08 33.4 0.1 7.6e-08 32.6 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|284164659|ref|YP_003402938.1| - 1.7e-07 31.2 1.5 1.7e-07 31.2 1.0 2.2 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|284164659|ref|YP_003402938.1| - 2.3e-06 26.3 0.6 3.4e-05 22.5 0.1 2.1 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.12 gi|284164659|ref|YP_003402938.1| - 2.5e-06 26.7 0.5 2e-05 23.8 0.0 2.2 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.1 gi|284164659|ref|YP_003402938.1| - 4.6e-06 26.5 0.4 4.6e-06 26.5 0.3 2.8 3 0 0 3 3 2 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|284164659|ref|YP_003402938.1| - 5.5e-05 22.2 2.3 0.014 14.3 0.1 2.8 3 0 0 3 3 3 2 Lycopene cyclase protein 3HCDH_N PF02737.13 gi|284164659|ref|YP_003402938.1| - 0.00031 20.4 0.1 0.00076 19.1 0.0 1.7 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.22 gi|284164659|ref|YP_003402938.1| - 0.005 17.2 0.6 0.005 17.2 0.4 2.7 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.16 gi|284164659|ref|YP_003402938.1| - 0.0056 16.2 0.2 0.013 15.1 0.1 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Shikimate_DH PF01488.15 gi|284164659|ref|YP_003402938.1| - 0.013 15.5 0.0 0.28 11.2 0.0 2.4 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase ApbA PF02558.11 gi|284164659|ref|YP_003402938.1| - 0.017 14.5 0.1 0.032 13.6 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA CPSase_L_chain PF00289.17 gi|284164659|ref|YP_003402938.1| - 0.072 13.2 0.1 0.37 10.8 0.0 2.2 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain GMC_oxred_N PF00732.14 gi|284164659|ref|YP_003402938.1| - 0.078 12.1 0.1 2.3 7.2 0.0 2.2 2 0 0 2 2 2 0 GMC oxidoreductase ThiF PF00899.16 gi|284164659|ref|YP_003402938.1| - 0.084 12.7 0.6 0.21 11.4 0.2 1.8 2 0 0 2 2 2 0 ThiF family RPAP2_Rtr1 PF04181.8 gi|284164659|ref|YP_003402938.1| - 0.089 12.8 0.0 0.25 11.4 0.0 1.9 1 1 0 1 1 1 0 Rtr1/RPAP2 family Amino_oxidase PF01593.19 gi|284164659|ref|YP_003402938.1| - 0.2 10.7 0.0 0.2 10.7 0.0 2.2 3 0 0 3 3 3 0 Flavin containing amine oxidoreductase DUF4397 PF14344.1 gi|284164660|ref|YP_003402939.1| - 2.6e-51 173.0 10.6 2.8e-38 130.9 1.7 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF4397) PTSIIA_gutA PF03829.8 gi|284164660|ref|YP_003402939.1| - 0.13 11.9 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 PTS system glucitol/sorbitol-specific IIA component Peptidase_M20 PF01546.23 gi|284164661|ref|YP_003402940.1| - 4.2e-21 75.3 16.6 2e-20 73.0 10.8 2.2 2 1 0 2 2 2 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|284164661|ref|YP_003402940.1| - 4.7e-13 48.8 0.9 1.9e-12 46.9 0.4 2.2 2 1 0 2 2 2 1 Peptidase dimerisation domain DUF302 PF03625.9 gi|284164662|ref|YP_003402941.1| - 1.7e-23 81.9 0.0 3.6e-22 77.6 0.0 2.1 2 0 0 2 2 2 2 Domain of unknown function DUF302 Ribosomal_S10 PF00338.17 gi|284164663|ref|YP_003402942.1| - 8.5e-14 51.1 0.0 9.5e-14 51.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e NUDIX PF00293.23 gi|284164664|ref|YP_003402943.1| - 1.2e-18 67.0 0.3 1.7e-18 66.5 0.2 1.1 1 0 0 1 1 1 1 NUDIX domain PqqD PF05402.7 gi|284164666|ref|YP_003402945.1| - 0.0004 20.3 0.1 0.00089 19.2 0.1 1.7 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) MFS_1 PF07690.11 gi|284164667|ref|YP_003402946.1| - 1.6e-48 165.2 49.4 3.6e-25 88.4 16.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|284164667|ref|YP_003402946.1| - 8.7e-08 31.1 25.4 9.2e-07 27.7 3.0 3.3 2 2 0 3 3 3 2 Sugar (and other) transporter LacY_symp PF01306.14 gi|284164667|ref|YP_003402946.1| - 0.34 9.4 8.0 0.17 10.4 1.8 2.2 2 0 0 2 2 2 0 LacY proton/sugar symporter PhoU PF01895.14 gi|284164668|ref|YP_003402947.1| - 2.6e-12 46.9 6.3 8e-10 39.0 0.0 2.6 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|284164668|ref|YP_003402947.1| - 3.5e-07 29.7 0.0 6.7e-07 28.9 0.0 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE UBN2 PF14223.1 gi|284164668|ref|YP_003402947.1| - 0.086 12.6 1.1 1.6 8.5 0.7 2.3 2 0 0 2 2 2 0 gag-polypeptide of LTR copia-type NAD_kinase PF01513.16 gi|284164669|ref|YP_003402948.1| - 5.5e-41 140.2 0.8 8.2e-41 139.6 0.5 1.3 1 1 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|284164669|ref|YP_003402948.1| - 8e-06 25.3 0.1 4.2e-05 23.0 0.1 2.1 2 0 0 2 2 2 1 Diacylglycerol kinase catalytic domain MoCF_biosynth PF00994.19 gi|284164671|ref|YP_003402950.1| - 3.5e-36 123.7 0.1 7e-36 122.7 0.0 1.5 1 1 0 1 1 1 1 Probable molybdopterin binding domain HTH_20 PF12840.2 gi|284164672|ref|YP_003402951.1| - 1.2e-06 28.1 0.0 2e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain RP-C PF03428.8 gi|284164672|ref|YP_003402951.1| - 0.00052 19.5 0.0 0.00066 19.1 0.0 1.3 1 1 0 1 1 1 1 Replication protein C N-terminal domain TrmB PF01978.14 gi|284164672|ref|YP_003402951.1| - 0.00065 19.3 0.0 0.0011 18.6 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|284164672|ref|YP_003402951.1| - 0.0017 17.6 0.1 0.0042 16.4 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding PadR PF03551.9 gi|284164672|ref|YP_003402951.1| - 0.073 12.8 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family PTPS PF01242.14 gi|284164673|ref|YP_003402952.1| - 9.1e-22 77.0 0.1 1.2e-21 76.6 0.0 1.1 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase Radical_SAM PF04055.16 gi|284164674|ref|YP_003402953.1| - 5.2e-23 82.0 0.8 2.3e-22 79.9 0.5 2.0 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|284164674|ref|YP_003402953.1| - 2e-17 63.2 0.0 3.3e-17 62.5 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|284164674|ref|YP_003402953.1| - 1.2e-10 41.6 0.0 1.8e-10 41.0 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain TP_methylase PF00590.15 gi|284164674|ref|YP_003402953.1| - 0.02 14.5 0.1 0.48 10.0 0.0 2.2 2 0 0 2 2 2 0 Tetrapyrrole (Corrin/Porphyrin) Methylases QueC PF06508.8 gi|284164675|ref|YP_003402954.1| - 7.8e-73 244.2 0.0 9e-73 244.0 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.9 gi|284164675|ref|YP_003402954.1| - 6.4e-08 32.2 0.0 1.4e-07 31.2 0.0 1.5 2 0 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.11 gi|284164675|ref|YP_003402954.1| - 0.00025 19.7 0.0 0.00034 19.2 0.0 1.1 1 0 0 1 1 1 1 tRNA methyl transferase Asn_synthase PF00733.16 gi|284164675|ref|YP_003402954.1| - 0.0016 17.9 0.0 0.003 17.0 0.0 1.4 1 0 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.12 gi|284164675|ref|YP_003402954.1| - 0.0044 15.9 0.0 0.0071 15.2 0.0 1.4 1 1 0 1 1 1 1 NAD synthase Usp PF00582.21 gi|284164675|ref|YP_003402954.1| - 0.12 12.5 0.2 0.26 11.4 0.2 1.6 1 1 0 1 1 1 0 Universal stress protein family PQQ_2 PF13360.1 gi|284164676|ref|YP_003402955.1| - 6.6e-31 107.5 15.5 4.6e-22 78.6 4.9 3.0 1 1 0 2 2 2 2 PQQ-like domain PQQ_3 PF13570.1 gi|284164676|ref|YP_003402955.1| - 3.5e-17 62.0 29.5 4.5e-05 23.5 0.1 8.0 6 1 0 6 6 6 5 PQQ-like domain PQQ PF01011.16 gi|284164676|ref|YP_003402955.1| - 1.6e-15 55.7 14.2 3.9e-05 22.9 0.0 7.4 5 1 0 6 6 6 4 PQQ enzyme repeat TAT_signal PF10518.4 gi|284164676|ref|YP_003402955.1| - 0.18 11.8 0.0 0.18 11.8 0.0 3.4 3 0 0 3 3 3 0 TAT (twin-arginine translocation) pathway signal sequence Rod_cone_degen PF15201.1 gi|284164676|ref|YP_003402955.1| - 0.8 9.5 3.5 1.5 8.7 0.1 2.9 2 1 1 3 3 3 0 Progressive rod-cone degeneration Fe-ADH PF00465.14 gi|284164677|ref|YP_003402956.1| - 8.1e-63 212.2 4.2 9.9e-63 211.9 2.9 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.1 gi|284164677|ref|YP_003402956.1| - 4.3e-09 36.0 0.0 6.6e-06 25.6 0.0 2.3 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase NAD_binding_10 PF13460.1 gi|284164678|ref|YP_003402957.1| - 6e-38 130.6 1.2 6.7e-38 130.5 0.8 1.0 1 0 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|284164678|ref|YP_003402957.1| - 4.7e-08 32.7 0.0 5.9e-08 32.4 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Saccharop_dh PF03435.13 gi|284164678|ref|YP_003402957.1| - 4.4e-06 25.9 0.2 6.1e-06 25.4 0.2 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase adh_short PF00106.20 gi|284164678|ref|YP_003402957.1| - 9.5e-05 22.3 2.8 9.5e-05 22.3 1.9 1.5 1 1 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.8 gi|284164678|ref|YP_003402957.1| - 0.00078 18.7 0.1 0.0012 18.1 0.1 1.3 1 0 0 1 1 1 1 NmrA-like family TrkA_N PF02254.13 gi|284164678|ref|YP_003402957.1| - 0.00095 19.1 0.4 0.0016 18.4 0.3 1.4 1 0 0 1 1 1 1 TrkA-N domain RmlD_sub_bind PF04321.12 gi|284164678|ref|YP_003402957.1| - 0.0014 17.6 0.1 0.0023 16.8 0.0 1.4 1 0 0 1 1 1 1 RmlD substrate binding domain DapB_N PF01113.15 gi|284164678|ref|YP_003402957.1| - 0.006 16.4 0.3 0.011 15.6 0.2 1.5 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus KR PF08659.5 gi|284164678|ref|YP_003402957.1| - 0.021 14.5 0.5 0.036 13.7 0.3 1.4 1 0 0 1 1 1 0 KR domain F420_oxidored PF03807.12 gi|284164678|ref|YP_003402957.1| - 0.033 14.6 1.4 0.13 12.7 0.4 2.5 2 2 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent DFP PF04127.10 gi|284164678|ref|YP_003402957.1| - 0.052 13.1 0.1 0.096 12.2 0.1 1.4 1 1 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein NAD_binding_2 PF03446.10 gi|284164678|ref|YP_003402957.1| - 0.075 12.8 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase HxlR PF01638.12 gi|284164679|ref|YP_003402958.1| - 8.9e-21 73.3 0.0 1.1e-20 73.0 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_34 PF13601.1 gi|284164679|ref|YP_003402958.1| - 3.8e-09 36.4 0.0 5.3e-09 35.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|284164679|ref|YP_003402958.1| - 2.5e-07 30.8 0.1 3.9e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|284164679|ref|YP_003402958.1| - 6.9e-07 28.8 0.1 1e-06 28.2 0.1 1.2 1 0 0 1 1 1 1 MarR family PadR PF03551.9 gi|284164679|ref|YP_003402958.1| - 1.4e-05 24.7 0.0 2.2e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family MarR PF01047.17 gi|284164679|ref|YP_003402958.1| - 1.8e-05 24.3 0.1 3.8e-05 23.2 0.0 1.5 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|284164679|ref|YP_003402958.1| - 4.5e-05 23.1 0.1 6.8e-05 22.5 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|284164679|ref|YP_003402958.1| - 4.8e-05 22.9 0.0 7.3e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|284164679|ref|YP_003402958.1| - 0.00014 21.4 0.1 0.00022 20.8 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|284164679|ref|YP_003402958.1| - 0.0014 18.4 0.0 0.0019 17.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_IclR PF09339.5 gi|284164679|ref|YP_003402958.1| - 0.0036 16.8 0.1 0.0059 16.1 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|284164679|ref|YP_003402958.1| - 0.0077 15.5 0.0 0.012 14.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Replic_Relax PF13814.1 gi|284164679|ref|YP_003402958.1| - 0.011 15.6 0.0 0.013 15.3 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation DUF3116 PF11313.3 gi|284164679|ref|YP_003402958.1| - 0.014 15.0 0.0 0.026 14.0 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3116) TFIIE_alpha PF02002.12 gi|284164679|ref|YP_003402958.1| - 0.014 14.9 0.1 0.017 14.6 0.1 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit DUF2250 PF10007.4 gi|284164679|ref|YP_003402958.1| - 0.019 14.8 0.1 1 9.3 0.0 2.2 2 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) DUF4364 PF14277.1 gi|284164679|ref|YP_003402958.1| - 0.035 13.7 0.0 0.046 13.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) GntR PF00392.16 gi|284164679|ref|YP_003402958.1| - 0.068 12.6 0.2 0.11 11.9 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family FeoC PF09012.5 gi|284164679|ref|YP_003402958.1| - 0.097 12.3 0.0 0.15 11.7 0.0 1.2 1 0 0 1 1 1 0 FeoC like transcriptional regulator Rrf2 PF02082.15 gi|284164679|ref|YP_003402958.1| - 0.13 12.4 0.0 0.18 11.9 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator Ribosomal_S3Ae PF01015.13 gi|284164680|ref|YP_003402959.1| - 1.1e-68 230.4 0.3 1.2e-68 230.2 0.2 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family Taq-exonuc PF09281.5 gi|284164681|ref|YP_003402960.1| - 0.046 13.8 0.0 0.062 13.4 0.0 1.3 1 0 0 1 1 1 0 Taq polymerase, exonuclease Fibrinogen_BP PF08017.6 gi|284164681|ref|YP_003402960.1| - 0.077 11.1 0.1 0.088 10.9 0.1 1.1 1 0 0 1 1 1 0 Fibrinogen binding protein Ribosomal_S15 PF00312.17 gi|284164683|ref|YP_003402962.1| - 7.5e-24 83.3 0.5 1e-23 82.8 0.3 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 Ribosomal_S13_N PF08069.7 gi|284164683|ref|YP_003402962.1| - 1.1e-23 82.8 0.0 1.7e-23 82.1 0.0 1.3 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain RGS-like PF09128.6 gi|284164683|ref|YP_003402962.1| - 0.064 12.7 0.1 0.077 12.4 0.0 1.2 1 0 0 1 1 1 0 Regulator of G protein signalling-like domain AMP-binding PF00501.23 gi|284164684|ref|YP_003402963.1| - 4.6e-93 311.8 0.7 5.7e-93 311.5 0.5 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|284164684|ref|YP_003402963.1| - 4e-17 62.9 0.2 9.8e-17 61.6 0.1 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Phage_integrase PF00589.17 gi|284164685|ref|YP_003402964.1| - 7.9e-13 48.4 0.0 5.4e-12 45.7 0.0 2.0 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|284164685|ref|YP_003402964.1| - 1.6e-07 31.3 0.3 2.8e-06 27.3 0.0 2.9 3 1 2 5 5 5 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|284164685|ref|YP_003402964.1| - 0.00035 20.8 0.0 0.0065 16.7 0.0 2.7 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_2 PF12834.2 gi|284164685|ref|YP_003402964.1| - 0.016 15.5 0.1 5.2 7.5 0.0 2.3 1 1 1 2 2 2 0 Phage integrase, N-terminal MarR_2 PF12802.2 gi|284164686|ref|YP_003402965.1| - 9.3e-07 28.4 0.0 1.4e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|284164686|ref|YP_003402965.1| - 6e-06 25.5 0.1 1.2e-05 24.6 0.1 1.5 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|284164686|ref|YP_003402965.1| - 2.3e-05 24.1 0.0 3.9e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|284164686|ref|YP_003402965.1| - 0.00026 20.6 0.0 0.00045 19.8 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|284164686|ref|YP_003402965.1| - 0.0011 18.4 0.1 0.0019 17.7 0.0 1.4 1 1 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|284164686|ref|YP_003402965.1| - 0.0018 18.5 0.0 0.0028 17.9 0.0 1.4 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|284164686|ref|YP_003402965.1| - 0.0066 16.2 0.0 0.014 15.1 0.0 1.6 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|284164686|ref|YP_003402965.1| - 0.0085 15.6 0.0 0.012 15.0 0.0 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_45 PF14947.1 gi|284164686|ref|YP_003402965.1| - 0.018 14.8 0.0 0.027 14.2 0.0 1.3 1 1 0 1 1 1 0 Winged helix-turn-helix HTH_12 PF08461.5 gi|284164686|ref|YP_003402965.1| - 0.032 13.9 0.1 0.051 13.3 0.0 1.3 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain PadR PF03551.9 gi|284164686|ref|YP_003402965.1| - 0.082 12.6 0.1 0.43 10.3 0.0 2.1 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family Fe_dep_repress PF01325.14 gi|284164686|ref|YP_003402965.1| - 0.087 12.7 0.1 0.22 11.4 0.0 1.7 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain Mrr_N PF14338.1 gi|284164686|ref|YP_003402965.1| - 0.087 12.9 0.0 0.16 12.0 0.0 1.5 1 1 0 1 1 1 0 Mrr N-terminal domain DUF4423 PF14394.1 gi|284164686|ref|YP_003402965.1| - 0.12 11.9 0.0 0.15 11.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_28 PF13518.1 gi|284164686|ref|YP_003402965.1| - 0.13 12.2 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_45 PF14947.1 gi|284164687|ref|YP_003402966.1| - 0.031 14.0 0.0 0.036 13.8 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix DUF4131 PF13567.1 gi|284164690|ref|YP_003402969.1| - 0.042 13.2 0.5 0.066 12.6 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Trep_Strep PF09605.5 gi|284164690|ref|YP_003402969.1| - 0.36 10.4 2.8 0.63 9.6 1.9 1.3 1 1 0 1 1 1 0 Hypothetical bacterial integral membrane protein (Trep_Strep) PadR PF03551.9 gi|284164691|ref|YP_003402970.1| - 8e-06 25.5 0.1 1.4e-05 24.7 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF4065 PF13274.1 gi|284164691|ref|YP_003402970.1| - 5.8e-05 23.7 2.2 0.00012 22.7 1.5 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF4065) Replic_Relax PF13814.1 gi|284164691|ref|YP_003402970.1| - 0.0001 22.2 0.0 0.00013 21.9 0.0 1.2 1 0 0 1 1 1 1 Replication-relaxation HxlR PF01638.12 gi|284164691|ref|YP_003402970.1| - 0.025 14.1 0.0 0.054 13.1 0.0 1.5 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_27 PF13463.1 gi|284164691|ref|YP_003402970.1| - 0.037 14.3 0.0 0.078 13.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|284164691|ref|YP_003402970.1| - 0.095 12.7 0.0 0.18 11.8 0.0 1.6 2 0 0 2 2 2 0 Winged helix DNA-binding domain DUF2513 PF10711.4 gi|284164691|ref|YP_003402970.1| - 0.13 12.3 0.0 0.25 11.4 0.0 1.5 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) DUF21 PF01595.15 gi|284164692|ref|YP_003402971.1| - 5.9e-52 175.6 3.4 8.6e-52 175.0 2.4 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF21 CorC_HlyC PF03471.12 gi|284164692|ref|YP_003402971.1| - 4.1e-21 74.5 1.7 4.1e-21 74.5 1.2 2.1 3 0 0 3 3 3 1 Transporter associated domain CBS PF00571.23 gi|284164692|ref|YP_003402971.1| - 5.4e-19 67.7 4.5 2.5e-09 36.7 0.4 2.7 2 0 0 2 2 2 2 CBS domain CbiX PF01903.12 gi|284164692|ref|YP_003402971.1| - 0.14 12.2 2.3 1.2 9.2 0.2 2.7 2 1 0 2 2 2 0 CbiX ABC_tran PF00005.22 gi|284164693|ref|YP_003402972.1| - 1e-60 203.9 0.0 7.6e-31 107.2 0.0 2.3 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.7 gi|284164693|ref|YP_003402972.1| - 2.4e-37 127.0 3.5 7.6e-18 64.6 0.1 2.6 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|284164693|ref|YP_003402972.1| - 1.4e-15 58.0 1.6 6.8e-06 26.2 0.0 4.1 2 2 1 4 4 4 3 AAA domain AAA_29 PF13555.1 gi|284164693|ref|YP_003402972.1| - 2.1e-08 33.5 1.7 0.0001 21.7 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|284164693|ref|YP_003402972.1| - 1.4e-07 31.7 3.1 0.0078 16.3 0.1 3.8 2 2 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|284164693|ref|YP_003402972.1| - 2e-06 27.9 0.0 0.059 13.3 0.0 2.8 2 1 0 2 2 2 2 AAA ATPase domain AAA_18 PF13238.1 gi|284164693|ref|YP_003402972.1| - 3.1e-06 27.5 0.0 0.042 14.1 0.0 3.0 3 0 0 3 3 3 2 AAA domain PRK PF00485.13 gi|284164693|ref|YP_003402972.1| - 1.5e-05 24.6 0.1 0.16 11.4 0.0 2.2 2 0 0 2 2 2 2 Phosphoribulokinase / Uridine kinase family SMC_N PF02463.14 gi|284164693|ref|YP_003402972.1| - 0.00033 19.9 2.4 1.7 7.7 0.1 3.8 2 2 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|284164693|ref|YP_003402972.1| - 0.00062 19.2 0.0 0.8 9.0 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|284164693|ref|YP_003402972.1| - 0.00073 18.6 0.1 3 6.7 0.0 3.2 3 0 0 3 3 3 1 AAA ATPase domain AAA_17 PF13207.1 gi|284164693|ref|YP_003402972.1| - 0.0012 19.6 0.4 0.36 11.6 0.0 2.9 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|284164693|ref|YP_003402972.1| - 0.0012 18.0 0.2 1.3 8.1 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_5 PF07728.9 gi|284164693|ref|YP_003402972.1| - 0.0018 17.9 0.5 0.2 11.3 0.0 2.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_23 PF13476.1 gi|284164693|ref|YP_003402972.1| - 0.0033 17.7 0.0 0.13 12.5 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|284164693|ref|YP_003402972.1| - 0.004 17.0 0.1 0.38 10.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain ArgK PF03308.11 gi|284164693|ref|YP_003402972.1| - 0.007 15.1 0.4 1.2 7.8 0.1 2.4 2 0 0 2 2 2 1 ArgK protein RNA_helicase PF00910.17 gi|284164693|ref|YP_003402972.1| - 0.0084 16.2 0.0 4.8 7.4 0.0 2.5 2 0 0 2 2 2 0 RNA helicase Mg_chelatase PF01078.16 gi|284164693|ref|YP_003402972.1| - 0.0099 15.0 0.0 0.21 10.7 0.0 2.6 3 0 0 3 3 3 1 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|284164693|ref|YP_003402972.1| - 0.01 15.2 0.1 2.4 7.5 0.0 2.9 3 0 0 3 3 3 0 Sigma-54 interaction domain T2SE PF00437.15 gi|284164693|ref|YP_003402972.1| - 0.011 14.7 0.1 2.9 6.7 0.0 3.1 3 0 0 3 3 3 0 Type II/IV secretion system protein Zeta_toxin PF06414.7 gi|284164693|ref|YP_003402972.1| - 0.017 14.1 0.6 0.66 9.0 0.1 2.4 2 0 0 2 2 2 0 Zeta toxin FtsK_SpoIIIE PF01580.13 gi|284164693|ref|YP_003402972.1| - 0.037 13.5 0.0 4.9 6.5 0.0 2.3 2 0 0 2 2 2 0 FtsK/SpoIIIE family MMR_HSR1 PF01926.18 gi|284164693|ref|YP_003402972.1| - 0.04 13.8 0.0 3.2 7.7 0.0 2.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_10 PF12846.2 gi|284164693|ref|YP_003402972.1| - 0.044 13.2 0.0 7.9 5.8 0.0 2.4 2 1 0 2 2 2 0 AAA-like domain AAA PF00004.24 gi|284164693|ref|YP_003402972.1| - 0.051 13.7 1.4 1.5 9.0 0.0 3.1 2 2 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) MobB PF03205.9 gi|284164693|ref|YP_003402972.1| - 0.053 13.2 0.3 5.8 6.6 0.0 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B IstB_IS21 PF01695.12 gi|284164693|ref|YP_003402972.1| - 0.082 12.3 0.0 9.4 5.6 0.0 2.4 2 0 0 2 2 2 0 IstB-like ATP binding protein KaiC PF06745.8 gi|284164693|ref|YP_003402972.1| - 0.1 11.6 1.5 2.5 7.1 0.0 2.6 3 0 0 3 3 2 0 KaiC Miro PF08477.8 gi|284164693|ref|YP_003402972.1| - 0.11 12.9 0.0 8.8 6.8 0.0 2.4 2 0 0 2 2 2 0 Miro-like protein NACHT PF05729.7 gi|284164693|ref|YP_003402972.1| - 0.12 12.0 1.2 8.1 6.0 0.0 2.4 2 0 0 2 2 2 0 NACHT domain FlpD PF02662.11 gi|284164693|ref|YP_003402972.1| - 0.12 12.0 0.0 18 5.0 0.0 2.4 2 0 0 2 2 2 0 Methyl-viologen-reducing hydrogenase, delta subunit NB-ARC PF00931.17 gi|284164693|ref|YP_003402972.1| - 0.14 10.9 0.1 4.5 6.0 0.0 2.2 2 0 0 2 2 2 0 NB-ARC domain BPD_transp_1 PF00528.17 gi|284164694|ref|YP_003402973.1| - 5.2e-21 75.0 13.4 5.2e-21 75.0 9.3 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|284164694|ref|YP_003402973.1| - 5.9e-06 25.5 0.5 2.5e-05 23.5 0.0 2.2 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C YqjK PF13997.1 gi|284164694|ref|YP_003402973.1| - 0.07 13.3 1.3 3.9 7.7 0.0 2.6 2 0 0 2 2 2 0 YqjK-like protein BPD_transp_1 PF00528.17 gi|284164695|ref|YP_003402974.1| - 1.5e-33 115.8 9.2 1.5e-33 115.8 6.4 2.1 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|284164696|ref|YP_003402975.1| - 1.3e-54 185.4 0.6 1.6e-52 178.6 0.7 2.1 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle HTH_10 PF04967.7 gi|284164697|ref|YP_003402976.1| - 9e-20 70.0 0.3 1.4e-19 69.4 0.2 1.3 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|284164697|ref|YP_003402976.1| - 0.0023 17.5 0.1 0.0054 16.3 0.1 1.7 1 1 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|284164697|ref|YP_003402976.1| - 0.0038 17.0 0.1 0.011 15.5 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|284164697|ref|YP_003402976.1| - 0.01 15.4 0.0 0.027 14.1 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Sigma70_r4 PF04545.11 gi|284164697|ref|YP_003402976.1| - 0.026 13.8 0.1 0.067 12.5 0.0 1.8 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_24 PF13412.1 gi|284164697|ref|YP_003402976.1| - 0.037 13.4 0.2 0.091 12.1 0.1 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_1 PF00126.22 gi|284164697|ref|YP_003402976.1| - 0.066 12.9 1.1 0.35 10.6 0.9 2.2 2 1 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family MarR PF01047.17 gi|284164697|ref|YP_003402976.1| - 0.12 12.1 0.0 0.38 10.5 0.0 1.9 1 1 0 1 1 1 0 MarR family Na_sulph_symp PF00939.14 gi|284164698|ref|YP_003402977.1| - 3.8e-39 134.8 36.2 6.8e-39 134.0 25.1 1.4 1 1 0 1 1 1 1 Sodium:sulfate symporter transmembrane region DUF4355 PF14265.1 gi|284164699|ref|YP_003402978.1| - 0.28 11.1 3.9 1.1 9.2 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4355) zinc_ribbon_5 PF13719.1 gi|284164700|ref|YP_003402979.1| - 0.067 12.7 0.2 7.7 6.1 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|284164700|ref|YP_003402979.1| - 0.077 12.7 0.1 6.8 6.4 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|284164700|ref|YP_003402979.1| - 0.12 11.7 1.6 0.3 10.4 0.1 2.0 2 0 0 2 2 2 0 TFIIB zinc-binding A2L_zn_ribbon PF08792.5 gi|284164700|ref|YP_003402979.1| - 0.13 11.7 0.8 1.6 8.3 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain DUF35_N PF12172.3 gi|284164700|ref|YP_003402979.1| - 0.85 9.6 3.9 7.9 6.5 2.7 2.1 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF1328 PF07043.8 gi|284164702|ref|YP_003402981.1| - 1.7e-13 50.2 18.6 2e-13 50.0 12.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1328) DUF2178 PF09946.4 gi|284164702|ref|YP_003402981.1| - 1.3 8.7 5.9 1.5 8.6 4.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2178) EAP30 PF04157.11 gi|284164703|ref|YP_003402982.1| - 0.0026 16.9 0.0 0.0031 16.7 0.0 1.2 1 0 0 1 1 1 1 EAP30/Vps36 family SurE PF01975.12 gi|284164704|ref|YP_003402983.1| - 2e-49 167.5 0.0 2.7e-49 167.1 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE Methyltransf_23 PF13489.1 gi|284164705|ref|YP_003402984.1| - 2e-12 47.1 0.0 5.1e-12 45.7 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|284164705|ref|YP_003402984.1| - 7.2e-09 36.0 0.0 1.6e-08 34.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|284164705|ref|YP_003402984.1| - 3.6e-06 27.5 0.1 1.1e-05 25.9 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|284164705|ref|YP_003402984.1| - 6.9e-05 23.2 0.0 0.00016 22.1 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Rsm22 PF09243.5 gi|284164705|ref|YP_003402984.1| - 0.0002 20.5 0.0 0.00032 19.8 0.0 1.2 1 0 0 1 1 1 1 Mitochondrial small ribosomal subunit Rsm22 Methyltransf_31 PF13847.1 gi|284164705|ref|YP_003402984.1| - 0.01 15.4 0.0 0.19 11.2 0.0 2.3 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_26 PF13659.1 gi|284164705|ref|YP_003402984.1| - 0.052 13.5 0.5 0.12 12.3 0.4 1.6 1 0 0 1 1 1 0 Methyltransferase domain PDH PF02153.12 gi|284164706|ref|YP_003402985.1| - 2.8e-12 46.0 4.3 5.1e-11 41.9 3.0 2.2 1 1 0 1 1 1 1 Prephenate dehydrogenase F420_oxidored PF03807.12 gi|284164706|ref|YP_003402985.1| - 0.00059 20.2 4.5 0.00065 20.0 0.8 2.4 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.17 gi|284164706|ref|YP_003402985.1| - 0.008 16.6 1.3 0.008 16.6 0.9 2.6 2 1 1 3 3 3 1 Oxidoreductase family, NAD-binding Rossmann fold DUF4616 PF15394.1 gi|284164706|ref|YP_003402985.1| - 0.066 12.2 2.1 3.2 6.6 0.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4616) Methyltransf_26 PF13659.1 gi|284164706|ref|YP_003402985.1| - 0.2 11.7 8.4 0.47 10.5 5.8 2.0 1 1 0 1 1 1 0 Methyltransferase domain ApbA PF02558.11 gi|284164706|ref|YP_003402985.1| - 0.63 9.4 2.4 3.1 7.2 1.6 2.0 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.13 gi|284164706|ref|YP_003402985.1| - 2.3 7.8 7.7 0.46 10.1 1.6 2.4 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Acetyltransf_1 PF00583.19 gi|284164707|ref|YP_003402986.1| - 1.2e-12 47.6 0.0 2.3e-12 46.7 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.1 gi|284164707|ref|YP_003402986.1| - 1.9e-12 47.3 0.0 2.9e-12 46.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|284164707|ref|YP_003402986.1| - 6.6e-08 32.6 0.0 1e-07 32.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|284164707|ref|YP_003402986.1| - 6e-07 29.5 0.0 1e-06 28.7 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|284164707|ref|YP_003402986.1| - 0.00028 20.7 0.1 0.00065 19.5 0.1 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|284164707|ref|YP_003402986.1| - 0.00032 20.8 0.0 0.00047 20.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|284164707|ref|YP_003402986.1| - 0.0018 18.1 0.0 0.0047 16.7 0.0 1.7 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_8 PF13523.1 gi|284164707|ref|YP_003402986.1| - 0.014 15.2 0.0 0.027 14.3 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|284164707|ref|YP_003402986.1| - 0.037 13.9 0.3 0.12 12.2 0.2 1.8 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain UBA_4 PF14555.1 gi|284164707|ref|YP_003402986.1| - 0.059 12.9 0.0 0.45 10.0 0.0 2.1 2 0 0 2 2 2 0 UBA-like domain NAD_binding_8 PF13450.1 gi|284164708|ref|YP_003402987.1| - 4.2e-13 49.1 0.6 1.1e-12 47.7 0.1 1.9 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.19 gi|284164708|ref|YP_003402987.1| - 8.7e-07 28.3 2.2 0.012 14.7 0.1 2.3 1 1 1 2 2 2 2 Flavin containing amine oxidoreductase DAO PF01266.19 gi|284164708|ref|YP_003402987.1| - 0.0022 16.9 2.0 0.011 14.6 0.7 2.3 1 1 1 2 2 2 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.1 gi|284164708|ref|YP_003402987.1| - 0.085 12.6 0.1 0.58 9.9 0.0 2.1 2 0 0 2 2 2 0 FAD-NAD(P)-binding Peptidase_M24 PF00557.19 gi|284164709|ref|YP_003402988.1| - 4.8e-42 143.9 1.8 8e-42 143.1 1.0 1.6 2 0 0 2 2 2 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|284164709|ref|YP_003402988.1| - 2.5e-09 37.7 0.1 5.4e-09 36.6 0.1 1.6 1 1 0 1 1 1 1 Creatinase/Prolidase N-terminal domain DUF4367 PF14285.1 gi|284164710|ref|YP_003402989.1| - 0.12 11.7 0.0 0.25 10.6 0.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4367) DUF2092 PF09865.4 gi|284164710|ref|YP_003402989.1| - 0.13 11.3 0.0 0.23 10.4 0.0 1.3 1 0 0 1 1 1 0 Predicted periplasmic protein (DUF2092) TAT_signal PF10518.4 gi|284164710|ref|YP_003402989.1| - 0.22 11.6 1.4 0.43 10.7 1.0 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence EPSP_synthase PF00275.15 gi|284164711|ref|YP_003402990.1| - 1.8e-107 359.4 0.0 2e-107 359.2 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TAT_signal PF10518.4 gi|284164712|ref|YP_003402991.1| - 0.029 14.3 5.0 0.057 13.4 3.5 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|284164712|ref|YP_003402991.1| - 0.035 13.2 1.8 0.074 12.2 1.3 1.5 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal FabA PF07977.8 gi|284164712|ref|YP_003402991.1| - 0.085 12.3 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 FabA-like domain DUF1628 PF07790.6 gi|284164712|ref|YP_003402991.1| - 0.11 13.2 0.1 0.9 10.3 0.0 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF1628) Thiolase_N PF00108.18 gi|284164713|ref|YP_003402992.1| - 8.9e-75 251.0 2.3 1.3e-74 250.5 1.6 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|284164713|ref|YP_003402992.1| - 4.1e-42 142.5 0.1 7.4e-42 141.6 0.1 1.5 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|284164713|ref|YP_003402992.1| - 1.3e-10 41.2 2.4 2.8e-10 40.1 0.7 1.9 1 1 1 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.5 gi|284164713|ref|YP_003402992.1| - 1.4 8.6 3.9 2.6 7.7 0.2 2.6 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III MFS_1 PF07690.11 gi|284164714|ref|YP_003402993.1| - 2e-51 174.8 54.9 5.7e-38 130.5 17.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|284164714|ref|YP_003402993.1| - 7.6e-08 31.3 32.9 0.0001 21.0 3.1 3.7 2 2 1 3 3 3 3 Sugar (and other) transporter MFS_2 PF13347.1 gi|284164714|ref|YP_003402993.1| - 1e-07 30.7 20.6 3.1e-06 25.8 4.2 2.2 1 1 1 2 2 2 2 MFS/sugar transport protein MFS_1_like PF12832.2 gi|284164714|ref|YP_003402993.1| - 0.02 14.6 6.1 2.1 8.1 0.1 3.8 3 0 0 3 3 3 0 MFS_1 like family Glyco_hydro_65N PF03636.10 gi|284164715|ref|YP_003402994.1| - 0.027 13.7 0.0 0.037 13.3 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 65, N-terminal domain Chorismate_synt PF01264.16 gi|284164716|ref|YP_003402995.1| - 3.6e-127 423.6 0.0 4.1e-127 423.4 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase Glyoxalase_4 PF13669.1 gi|284164717|ref|YP_003402996.1| - 3.5e-31 107.4 0.0 4.7e-31 107.0 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|284164717|ref|YP_003402996.1| - 0.00023 21.1 0.0 0.00033 20.6 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_2 PF12681.2 gi|284164717|ref|YP_003402996.1| - 0.0052 17.3 0.4 0.013 16.1 0.2 1.7 1 1 1 2 2 2 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|284164717|ref|YP_003402996.1| - 0.029 14.3 0.0 0.039 13.9 0.0 1.2 1 0 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily OsmC PF02566.14 gi|284164718|ref|YP_003402997.1| - 3.2e-18 65.7 0.0 4.1e-18 65.4 0.0 1.1 1 0 0 1 1 1 1 OsmC-like protein E1_dh PF00676.15 gi|284164719|ref|YP_003402998.1| - 6.2e-96 320.6 0.0 7.3e-96 320.4 0.0 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component Transketolase_N PF00456.16 gi|284164719|ref|YP_003402998.1| - 1.7e-08 33.6 0.1 2.2e-08 33.2 0.1 1.3 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain TPP_enzyme_C PF02775.16 gi|284164719|ref|YP_003402998.1| - 2.5e-08 33.6 1.1 2e-07 30.7 0.7 2.1 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.1 gi|284164719|ref|YP_003402998.1| - 4.6e-05 22.4 0.3 0.00015 20.8 0.0 1.8 2 1 0 2 2 2 1 1-deoxy-D-xylulose-5-phosphate synthase DUF2188 PF09954.4 gi|284164719|ref|YP_003402998.1| - 0.044 13.7 0.5 0.17 11.7 0.1 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2188) SHOCT PF09851.4 gi|284164719|ref|YP_003402998.1| - 6.2 6.4 11.0 0.13 11.7 2.3 2.3 3 0 0 3 3 3 0 Short C-terminal domain Transket_pyr PF02779.19 gi|284164720|ref|YP_003402999.1| - 3.8e-45 153.5 0.5 2.4e-44 150.9 0.4 1.9 2 0 0 2 2 2 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.15 gi|284164720|ref|YP_003402999.1| - 2.6e-32 111.3 0.1 5.3e-32 110.3 0.1 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain NAD_kinase PF01513.16 gi|284164721|ref|YP_003403000.1| - 9.5e-19 67.2 0.1 1.3e-18 66.8 0.1 1.3 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|284164721|ref|YP_003403000.1| - 3.2e-05 23.3 1.5 0.00016 21.1 0.8 2.1 2 0 0 2 2 2 1 Diacylglycerol kinase catalytic domain E3_binding PF02817.12 gi|284164722|ref|YP_003403001.1| - 7.5e-26 89.4 8.1 6.5e-13 48.0 0.0 2.8 3 0 0 3 3 3 2 e3 binding domain 2-oxoacid_dh PF00198.18 gi|284164722|ref|YP_003403001.1| - 2.1e-20 72.9 0.3 3.1e-20 72.4 0.2 1.2 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.17 gi|284164722|ref|YP_003403001.1| - 3.2e-15 55.5 1.2 7.3e-15 54.3 0.9 1.7 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.1 gi|284164722|ref|YP_003403001.1| - 3.9e-06 26.4 1.0 0.01 15.5 0.4 2.9 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_2 PF12700.2 gi|284164722|ref|YP_003403001.1| - 0.00029 20.1 0.9 0.33 10.0 0.1 2.7 1 1 1 2 2 2 2 HlyD family secretion protein HlyD_3 PF13437.1 gi|284164722|ref|YP_003403001.1| - 0.023 15.0 1.7 4 7.8 0.1 3.1 2 1 1 3 3 3 0 HlyD family secretion protein QRPTase_N PF02749.11 gi|284164722|ref|YP_003403001.1| - 0.033 14.0 0.0 0.62 9.9 0.0 2.7 2 0 0 2 2 2 0 Quinolinate phosphoribosyl transferase, N-terminal domain Abhydrolase_3 PF07859.8 gi|284164723|ref|YP_003403002.1| - 1.8e-76 256.3 0.2 2.3e-76 256.0 0.2 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold COesterase PF00135.23 gi|284164723|ref|YP_003403002.1| - 3.3e-07 29.4 0.0 6.4e-07 28.4 0.0 1.4 1 1 0 1 1 1 1 Carboxylesterase family Abhydrolase_5 PF12695.2 gi|284164723|ref|YP_003403002.1| - 4.7e-06 26.4 0.1 6.4e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|284164723|ref|YP_003403002.1| - 0.032 13.4 0.2 0.19 10.9 0.1 2.0 1 1 0 1 1 1 0 Prolyl oligopeptidase family Chlorophyllase2 PF12740.2 gi|284164723|ref|YP_003403002.1| - 0.056 12.3 0.0 0.1 11.4 0.0 1.4 1 0 0 1 1 1 0 Chlorophyllase enzyme DUF2424 PF10340.4 gi|284164723|ref|YP_003403002.1| - 0.25 9.9 0.0 0.35 9.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2424) POR_N PF01855.14 gi|284164724|ref|YP_003403003.1| - 1.1e-51 175.5 0.0 2e-51 174.7 0.0 1.4 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|284164724|ref|YP_003403003.1| - 1.2e-45 155.4 0.0 2.7e-45 154.3 0.0 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.13 gi|284164724|ref|YP_003403003.1| - 0.0024 17.4 0.1 0.0055 16.2 0.0 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.15 gi|284164724|ref|YP_003403003.1| - 0.0034 17.3 0.0 0.01 15.7 0.0 1.7 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.16 gi|284164725|ref|YP_003403004.1| - 3.3e-32 111.1 0.0 5.1e-32 110.5 0.0 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DUF1469 PF07332.6 gi|284164727|ref|YP_003403006.1| - 0.01 15.5 5.5 1.6 8.4 3.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) Colicin_V PF02674.11 gi|284164727|ref|YP_003403006.1| - 0.028 14.2 3.2 0.14 12.0 2.2 1.8 1 1 0 1 1 1 0 Colicin V production protein TctB PF07331.6 gi|284164727|ref|YP_003403006.1| - 0.05 13.2 4.5 0.14 11.7 3.1 1.6 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family DUF2910 PF11139.3 gi|284164727|ref|YP_003403006.1| - 0.068 12.3 2.5 0.15 11.1 1.8 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2910) SdpI PF13630.1 gi|284164727|ref|YP_003403006.1| - 0.95 9.2 7.1 0.74 9.5 2.0 2.1 1 1 1 2 2 2 0 SdpI/YhfL protein family DUF4131 PF13567.1 gi|284164727|ref|YP_003403006.1| - 1.2 8.4 5.7 7.4 5.9 4.0 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) Neurensin PF14927.1 gi|284164727|ref|YP_003403006.1| - 4.1 6.7 7.0 18 4.6 4.1 2.1 1 1 1 2 2 2 0 Neurensin HTH_24 PF13412.1 gi|284164728|ref|YP_003403007.1| - 3.6e-14 51.8 0.0 6.4e-14 51.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|284164728|ref|YP_003403007.1| - 3.8e-13 48.9 0.0 6.4e-13 48.2 0.0 1.4 1 0 0 1 1 1 1 AsnC family HTH_AsnC-type PF13404.1 gi|284164728|ref|YP_003403007.1| - 4e-09 35.8 0.0 7.9e-09 34.9 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|284164728|ref|YP_003403007.1| - 1.8e-08 33.9 0.0 5.1e-08 32.4 0.0 1.9 1 1 0 1 1 1 1 HTH domain HTH_DeoR PF08220.7 gi|284164728|ref|YP_003403007.1| - 5.3e-07 29.0 0.0 9.8e-07 28.2 0.0 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|284164728|ref|YP_003403007.1| - 6.1e-07 29.2 0.2 1.7e-06 27.8 0.0 1.8 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.5 gi|284164728|ref|YP_003403007.1| - 7.6e-07 28.6 0.0 1.4e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_36 PF13730.1 gi|284164728|ref|YP_003403007.1| - 1.4e-06 28.3 0.0 6.2e-06 26.2 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_20 PF12840.2 gi|284164728|ref|YP_003403007.1| - 6.8e-06 25.7 0.0 1.4e-05 24.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.1 gi|284164728|ref|YP_003403007.1| - 9.5e-06 25.5 0.0 1.6e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|284164728|ref|YP_003403007.1| - 1.1e-05 25.0 0.0 2.1e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.1 gi|284164728|ref|YP_003403007.1| - 1.7e-05 24.2 0.0 3.2e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain MarR_2 PF12802.2 gi|284164728|ref|YP_003403007.1| - 3.4e-05 23.4 0.0 0.00042 19.9 0.0 2.2 2 0 0 2 2 2 1 MarR family Rrf2 PF02082.15 gi|284164728|ref|YP_003403007.1| - 4.5e-05 23.4 0.1 0.00023 21.2 0.0 1.9 1 1 1 2 2 2 1 Transcriptional regulator HTH_5 PF01022.15 gi|284164728|ref|YP_003403007.1| - 6.7e-05 22.4 0.0 0.00014 21.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|284164728|ref|YP_003403007.1| - 7.3e-05 22.3 0.1 0.00013 21.5 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB LacI PF00356.16 gi|284164728|ref|YP_003403007.1| - 0.0001 21.8 0.1 0.00093 18.7 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family FaeA PF04703.7 gi|284164728|ref|YP_003403007.1| - 0.0003 20.8 0.0 0.00049 20.1 0.0 1.3 1 0 0 1 1 1 1 FaeA-like protein GntR PF00392.16 gi|284164728|ref|YP_003403007.1| - 0.00043 19.6 0.1 0.0013 18.1 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TFIIE_alpha PF02002.12 gi|284164728|ref|YP_003403007.1| - 0.00077 18.9 0.1 0.0011 18.4 0.1 1.4 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_45 PF14947.1 gi|284164728|ref|YP_003403007.1| - 0.0011 18.7 0.0 0.0029 17.3 0.0 1.7 1 1 0 1 1 1 1 Winged helix-turn-helix Sigma70_r4_2 PF08281.7 gi|284164728|ref|YP_003403007.1| - 0.0015 17.9 0.0 0.0033 16.8 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_29 PF13551.1 gi|284164728|ref|YP_003403007.1| - 0.0018 18.4 0.0 0.003 17.6 0.0 1.6 1 1 0 1 1 1 1 Winged helix-turn helix HTH_27 PF13463.1 gi|284164728|ref|YP_003403007.1| - 0.0025 18.1 0.1 0.006 16.8 0.0 1.7 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_Mga PF08280.6 gi|284164728|ref|YP_003403007.1| - 0.0038 16.9 0.0 0.0072 16.0 0.0 1.5 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_Tnp_ISL3 PF13542.1 gi|284164728|ref|YP_003403007.1| - 0.0059 15.7 0.0 0.011 14.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_6 PF01418.12 gi|284164728|ref|YP_003403007.1| - 0.008 15.8 0.0 0.015 14.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain, rpiR family HTH_10 PF04967.7 gi|284164728|ref|YP_003403007.1| - 0.0093 15.5 0.0 0.023 14.2 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain DUF4110 PF13422.1 gi|284164728|ref|YP_003403007.1| - 0.013 15.3 0.1 0.042 13.6 0.0 1.8 1 1 2 3 3 2 0 Domain of unknown function (DUF4110) EAP30 PF04157.11 gi|284164728|ref|YP_003403007.1| - 0.016 14.3 0.0 0.026 13.6 0.0 1.3 1 0 0 1 1 1 0 EAP30/Vps36 family TetR_N PF00440.18 gi|284164728|ref|YP_003403007.1| - 0.019 14.5 0.1 0.036 13.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_1 PF00126.22 gi|284164728|ref|YP_003403007.1| - 0.02 14.6 0.0 0.039 13.6 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family FeoC PF09012.5 gi|284164728|ref|YP_003403007.1| - 0.023 14.3 0.0 0.039 13.6 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_3 PF01381.17 gi|284164728|ref|YP_003403007.1| - 0.031 14.1 0.1 0.071 12.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix HTH_34 PF13601.1 gi|284164728|ref|YP_003403007.1| - 0.032 14.2 0.0 0.074 13.0 0.0 1.7 1 1 0 1 1 1 0 Winged helix DNA-binding domain DUF2250 PF10007.4 gi|284164728|ref|YP_003403007.1| - 0.032 14.1 0.1 0.06 13.2 0.0 1.6 2 0 0 2 2 1 0 Uncharacterized protein conserved in archaea (DUF2250) DUF2913 PF11140.3 gi|284164728|ref|YP_003403007.1| - 0.05 12.8 0.0 0.07 12.4 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2913) HTH_17 PF12728.2 gi|284164728|ref|YP_003403007.1| - 0.052 13.8 0.0 0.082 13.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|284164728|ref|YP_003403007.1| - 0.066 12.5 0.1 0.15 11.3 0.0 1.7 2 0 0 2 2 1 0 Sigma-70, region 4 HTH_40 PF14493.1 gi|284164728|ref|YP_003403007.1| - 0.09 13.0 0.1 0.14 12.3 0.1 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_7 PF02796.10 gi|284164728|ref|YP_003403007.1| - 0.094 12.5 0.1 0.27 11.1 0.0 1.8 2 0 0 2 2 1 0 Helix-turn-helix domain of resolvase RPA_C PF08784.6 gi|284164728|ref|YP_003403007.1| - 0.096 13.1 0.0 0.18 12.2 0.0 1.4 1 0 0 1 1 1 0 Replication protein A C terminal HTH_31 PF13560.1 gi|284164728|ref|YP_003403007.1| - 0.099 12.8 0.0 0.2 11.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Methyltransf_14 PF08484.6 gi|284164728|ref|YP_003403007.1| - 0.12 11.9 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 C-methyltransferase C-terminal domain HTH_Tnp_1 PF01527.15 gi|284164728|ref|YP_003403007.1| - 0.12 12.3 0.1 0.19 11.7 0.1 1.4 1 1 0 1 1 1 0 Transposase HTH_30 PF13556.1 gi|284164728|ref|YP_003403007.1| - 0.12 11.9 0.0 0.23 11.1 0.0 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain Phage_NinH PF06322.6 gi|284164728|ref|YP_003403007.1| - 0.12 11.9 0.0 0.22 11.1 0.0 1.4 1 0 0 1 1 1 0 Phage NinH protein Polyketide_cyc PF03364.15 gi|284164729|ref|YP_003403008.1| - 2e-07 31.0 0.0 3.1e-07 30.4 0.0 1.3 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc2 PF10604.4 gi|284164729|ref|YP_003403008.1| - 4.7e-05 23.5 1.8 5.4e-05 23.3 1.3 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport NosL PF05573.7 gi|284164730|ref|YP_003403009.1| - 3.9e-17 62.3 0.0 5e-17 61.9 0.0 1.1 1 0 0 1 1 1 1 NosL EamA PF00892.15 gi|284164731|ref|YP_003403010.1| - 1.4e-29 102.6 28.4 6.7e-21 74.6 4.7 2.1 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|284164731|ref|YP_003403010.1| - 3.7e-07 30.3 37.5 2.2e-06 27.8 9.1 3.2 2 2 2 4 4 4 2 Multidrug resistance efflux transporter UAA PF08449.6 gi|284164731|ref|YP_003403010.1| - 0.00015 20.7 1.7 0.00022 20.2 0.9 1.4 1 1 0 1 1 1 1 UAA transporter family TPT PF03151.11 gi|284164731|ref|YP_003403010.1| - 0.96 9.0 15.6 0.15 11.7 5.0 2.8 2 1 0 2 2 2 0 Triose-phosphate Transporter family Methyltransf_18 PF12847.2 gi|284164732|ref|YP_003403011.1| - 2.2e-15 57.2 0.1 3e-15 56.7 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|284164732|ref|YP_003403011.1| - 5.4e-13 48.9 0.0 7e-13 48.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|284164732|ref|YP_003403011.1| - 2.6e-12 46.3 0.0 2.9e-12 46.1 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_31 PF13847.1 gi|284164732|ref|YP_003403011.1| - 3.4e-12 46.1 0.0 4.1e-12 45.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|284164732|ref|YP_003403011.1| - 3.9e-12 46.5 0.0 6.2e-12 45.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|284164732|ref|YP_003403011.1| - 7.6e-10 38.8 0.4 4.6e-09 36.3 0.3 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|284164732|ref|YP_003403011.1| - 8.1e-10 39.0 0.1 1.2e-09 38.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|284164732|ref|YP_003403011.1| - 1.4e-08 35.0 0.0 2.2e-08 34.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|284164732|ref|YP_003403011.1| - 2.2e-06 26.9 0.0 3.3e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.9 gi|284164732|ref|YP_003403011.1| - 2.9e-06 26.7 0.0 8e-06 25.3 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase small domain TPMT PF05724.6 gi|284164732|ref|YP_003403011.1| - 0.0002 20.8 0.0 0.00026 20.5 0.0 1.1 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) NodS PF05401.6 gi|284164732|ref|YP_003403011.1| - 0.00064 19.1 0.0 0.00096 18.6 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) 3HCDH_N PF02737.13 gi|284164732|ref|YP_003403011.1| - 0.027 14.1 0.0 0.038 13.6 0.0 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF2188 PF09954.4 gi|284164732|ref|YP_003403011.1| - 0.039 13.8 0.3 0.082 12.8 0.2 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2188) MetW PF07021.7 gi|284164732|ref|YP_003403011.1| - 0.083 12.2 0.0 0.12 11.7 0.0 1.1 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Redoxin PF08534.5 gi|284164733|ref|YP_003403012.1| - 4.5e-07 29.5 0.0 6.5e-07 29.0 0.0 1.3 1 0 0 1 1 1 1 Redoxin AhpC-TSA PF00578.16 gi|284164733|ref|YP_003403012.1| - 2.2e-06 27.3 0.0 3.2e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin_8 PF13905.1 gi|284164733|ref|YP_003403012.1| - 2.2e-06 27.6 0.0 4.3e-06 26.7 0.0 1.4 1 1 0 1 1 1 1 Thioredoxin-like Thioredoxin PF00085.15 gi|284164733|ref|YP_003403012.1| - 0.00013 21.5 0.0 0.04 13.5 0.0 2.2 2 0 0 2 2 2 2 Thioredoxin Thioredoxin_2 PF13098.1 gi|284164733|ref|YP_003403012.1| - 0.00018 21.6 0.0 0.0003 20.9 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like domain TAT_signal PF10518.4 gi|284164733|ref|YP_003403012.1| - 0.054 13.5 3.5 0.054 13.5 2.4 2.1 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence TrkA_N PF02254.13 gi|284164734|ref|YP_003403013.1| - 2.5e-37 127.4 3.1 7e-25 87.2 0.8 2.5 2 0 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.16 gi|284164734|ref|YP_003403013.1| - 1e-24 85.8 10.8 2.5e-13 49.3 0.1 3.4 4 0 0 4 4 4 2 TrkA-C domain NAD_binding_7 PF13241.1 gi|284164734|ref|YP_003403013.1| - 5.5e-10 39.4 1.7 7.6e-06 26.1 0.5 2.6 2 0 0 2 2 2 2 Putative NAD(P)-binding Shikimate_DH PF01488.15 gi|284164734|ref|YP_003403013.1| - 1.4e-07 31.7 0.2 0.0011 19.0 0.2 2.5 2 0 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|284164734|ref|YP_003403013.1| - 1.2e-06 28.8 2.0 0.0031 17.9 0.2 3.7 3 1 1 4 4 4 2 NADP oxidoreductase coenzyme F420-dependent Pyr_redox PF00070.22 gi|284164734|ref|YP_003403013.1| - 1.8e-06 28.2 0.8 0.067 13.6 0.1 4.1 5 0 0 5 5 4 2 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|284164734|ref|YP_003403013.1| - 2.2e-06 27.1 0.4 8.4e-06 25.2 0.1 2.1 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|284164734|ref|YP_003403013.1| - 6.7e-06 25.9 0.3 6.7e-05 22.6 0.1 2.5 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|284164734|ref|YP_003403013.1| - 7.9e-06 25.6 2.8 0.023 14.3 0.8 2.5 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|284164734|ref|YP_003403013.1| - 1e-05 24.7 0.7 0.00052 19.1 0.4 2.3 2 0 0 2 2 2 1 Saccharopine dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|284164734|ref|YP_003403013.1| - 1.2e-05 24.7 0.5 9.7e-05 21.8 0.1 2.5 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_2 PF03446.10 gi|284164734|ref|YP_003403013.1| - 3.8e-05 23.5 0.1 0.016 15.0 0.1 2.6 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase FAD_binding_3 PF01494.14 gi|284164734|ref|YP_003403013.1| - 0.00098 18.2 0.1 0.0088 15.1 0.1 2.1 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|284164734|ref|YP_003403013.1| - 0.0011 18.9 0.3 0.8 9.5 0.1 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|284164734|ref|YP_003403013.1| - 0.0013 17.7 1.1 0.046 12.6 0.2 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase ADH_zinc_N PF00107.21 gi|284164734|ref|YP_003403013.1| - 0.024 14.1 0.2 0.27 10.7 0.0 2.7 2 1 1 3 3 3 0 Zinc-binding dehydrogenase ThiF PF00899.16 gi|284164734|ref|YP_003403013.1| - 0.036 13.8 5.4 0.31 10.8 0.1 3.7 3 1 1 4 4 3 0 ThiF family Lycopene_cycl PF05834.7 gi|284164734|ref|YP_003403013.1| - 0.12 11.2 0.5 4.2 6.1 0.1 3.0 4 0 0 4 4 4 0 Lycopene cyclase protein NAD_binding_8 PF13450.1 gi|284164734|ref|YP_003403013.1| - 0.14 12.2 0.2 1.3 9.0 0.1 2.5 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Rossmann-like PF10727.4 gi|284164734|ref|YP_003403013.1| - 4 7.1 8.1 11 5.7 1.7 3.8 3 1 0 3 3 3 0 Rossmann-like domain PQQ_2 PF13360.1 gi|284164735|ref|YP_003403014.1| - 2.9e-65 220.0 18.3 9e-24 84.2 1.0 4.0 2 1 3 5 5 5 4 PQQ-like domain PQQ_3 PF13570.1 gi|284164735|ref|YP_003403014.1| - 1.2e-51 171.5 43.8 3.5e-12 46.1 0.3 9.7 9 0 0 9 9 9 7 PQQ-like domain HEAT_2 PF13646.1 gi|284164735|ref|YP_003403014.1| - 1e-46 157.0 129.6 1e-06 28.8 0.4 13.1 4 3 7 14 14 14 13 HEAT repeats PQQ PF01011.16 gi|284164735|ref|YP_003403014.1| - 3.7e-27 92.4 11.1 2.2e-09 36.3 0.0 7.6 7 0 0 7 7 7 4 PQQ enzyme repeat HEAT_EZ PF13513.1 gi|284164735|ref|YP_003403014.1| - 7.3e-25 86.7 146.0 0.00026 21.3 1.1 19.7 10 5 10 20 20 20 16 HEAT-like repeat Adaptin_N PF01602.15 gi|284164735|ref|YP_003403014.1| - 1.4e-23 83.0 19.5 9.5e-06 24.2 0.0 7.5 3 2 3 7 7 7 7 Adaptin N terminal region Cnd1 PF12717.2 gi|284164735|ref|YP_003403014.1| - 4.3e-18 65.7 0.0 0.0015 18.4 0.0 8.2 5 4 2 9 9 9 5 non-SMC mitotic condensation complex subunit 1 HEAT PF02985.17 gi|284164735|ref|YP_003403014.1| - 6.7e-16 56.8 90.2 0.0002 21.1 0.4 19.8 21 0 0 21 21 20 7 HEAT repeat Arm PF00514.18 gi|284164735|ref|YP_003403014.1| - 4.3e-12 45.3 37.0 0.036 13.8 0.1 13.5 16 0 0 16 16 15 5 Armadillo/beta-catenin-like repeat DUF2435 PF10363.4 gi|284164735|ref|YP_003403014.1| - 6.1e-09 35.6 5.0 0.42 10.5 0.0 7.2 7 2 2 9 9 8 2 Protein of unknown function (DUF2435) MMS19_N PF14500.1 gi|284164735|ref|YP_003403014.1| - 7.6e-05 22.0 0.5 6.8 5.8 0.0 6.0 6 1 0 6 6 6 1 Dos2-interacting transcription regulator of RNA-Pol-II TIP120 PF08623.5 gi|284164735|ref|YP_003403014.1| - 9.8e-05 22.0 0.6 0.94 9.0 0.1 5.0 6 1 1 7 7 7 1 TATA-binding protein interacting (TIP20) CLASP_N PF12348.3 gi|284164735|ref|YP_003403014.1| - 0.0022 17.3 8.8 18 4.5 0.6 6.8 5 2 2 8 8 8 0 CLASP N terminal DUF3730 PF12530.3 gi|284164735|ref|YP_003403014.1| - 0.02 14.8 0.0 2.1 8.2 0.0 3.7 3 2 1 4 4 4 0 Protein of unknown function (DUF3730) Cohesin_HEAT PF12765.2 gi|284164735|ref|YP_003403014.1| - 0.067 13.1 27.9 0.083 12.8 0.2 7.3 6 0 0 6 6 6 0 HEAT repeat associated with sister chromatid cohesion DUF4042 PF13251.1 gi|284164735|ref|YP_003403014.1| - 2 7.8 8.9 11 5.4 0.1 5.0 4 1 1 5 5 5 0 Domain of unknown function (DUF4042) SBP_bac_5 PF00496.17 gi|284164736|ref|YP_003403015.1| - 3.8e-57 193.8 0.2 4.7e-57 193.5 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|284164736|ref|YP_003403015.1| - 0.33 11.0 3.5 0.65 10.1 2.4 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence AA_permease_2 PF13520.1 gi|284164737|ref|YP_003403016.1| - 4.1e-32 111.2 41.4 5.4e-32 110.8 28.7 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|284164737|ref|YP_003403016.1| - 1.5e-13 49.9 42.4 8.1e-13 47.5 29.4 1.8 1 1 0 1 1 1 1 Amino acid permease WBP-1 PF11669.3 gi|284164737|ref|YP_003403016.1| - 0.73 9.9 2.9 8 6.5 0.0 2.5 3 0 0 3 3 3 0 WW domain-binding protein 1 Topoisom_bac PF01131.15 gi|284164738|ref|YP_003403017.1| - 4.6e-115 384.6 0.0 6.2e-115 384.2 0.0 1.2 1 0 0 1 1 1 1 DNA topoisomerase zf-C4_Topoisom PF01396.14 gi|284164738|ref|YP_003403017.1| - 2.6e-20 71.6 13.7 1.5e-13 49.9 0.6 3.6 4 0 0 4 4 4 2 Topoisomerase DNA binding C4 zinc finger Toprim PF01751.17 gi|284164738|ref|YP_003403017.1| - 2e-16 59.7 0.0 4.1e-16 58.7 0.0 1.6 1 0 0 1 1 1 1 Toprim domain HHH_5 PF14520.1 gi|284164738|ref|YP_003403017.1| - 3.3e-09 36.7 3.6 8e-08 32.3 0.9 2.9 2 0 0 2 2 2 1 Helix-hairpin-helix domain Cdd1 PF11731.3 gi|284164738|ref|YP_003403017.1| - 0.00089 19.1 0.0 0.0023 17.8 0.0 1.7 1 0 0 1 1 1 1 Pathogenicity locus DNA_pol_lambd_f PF10391.4 gi|284164738|ref|YP_003403017.1| - 0.0024 17.4 0.1 0.009 15.5 0.0 2.0 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda HHH PF00633.18 gi|284164738|ref|YP_003403017.1| - 0.046 13.4 0.0 0.16 11.7 0.0 2.0 1 0 0 1 1 1 0 Helix-hairpin-helix motif TrmB PF01978.14 gi|284164738|ref|YP_003403017.1| - 0.089 12.5 0.2 9.4 6.0 0.0 3.2 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB Rotamase_2 PF13145.1 gi|284164738|ref|YP_003403017.1| - 0.13 12.8 0.2 0.13 12.8 0.1 2.6 3 0 0 3 3 3 0 PPIC-type PPIASE domain TF_Zn_Ribbon PF08271.7 gi|284164738|ref|YP_003403017.1| - 0.32 10.3 5.2 3.7 6.9 0.0 3.8 3 0 0 3 3 3 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|284164738|ref|YP_003403017.1| - 3.7 7.5 12.4 9.2 6.3 0.1 4.1 3 1 1 4 4 4 0 Zinc ribbon domain Methyltransf_21 PF05050.7 gi|284164739|ref|YP_003403018.1| - 1.3e-22 80.5 0.0 1.8e-22 80.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase FkbM domain Methyltransf_18 PF12847.2 gi|284164739|ref|YP_003403018.1| - 7e-06 26.6 0.0 1e-05 26.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain V_cholerae_RfbT PF05575.6 gi|284164739|ref|YP_003403018.1| - 7.2e-05 21.9 0.0 0.0001 21.4 0.0 1.1 1 0 0 1 1 1 1 Vibrio cholerae RfbT protein Met_10 PF02475.11 gi|284164739|ref|YP_003403018.1| - 0.0002 21.0 0.0 0.00027 20.5 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Glyco_hydro_97 PF10566.4 gi|284164740|ref|YP_003403019.1| - 6.3e-81 271.4 0.0 1.1e-80 270.7 0.0 1.3 1 0 0 1 1 1 1 Glycoside hydrolase 97 GH97_N PF14508.1 gi|284164740|ref|YP_003403019.1| - 1.1e-65 221.2 0.1 3e-65 219.7 0.0 1.8 2 0 0 2 2 2 1 Glycosyl-hydrolase 97 N-terminal DUF2223 PF09985.4 gi|284164740|ref|YP_003403019.1| - 1.2e-38 132.7 0.0 2.9e-38 131.4 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF2223) GH97_C PF14509.1 gi|284164740|ref|YP_003403019.1| - 4.9e-23 81.1 0.0 1.1e-15 57.5 0.0 2.5 2 0 0 2 2 2 2 Glycosyl-hydrolase 97 C-terminal, oligomerisation CBM_6 PF03422.10 gi|284164740|ref|YP_003403019.1| - 0.23 11.6 5.6 0.078 13.1 0.4 2.9 3 0 0 3 3 3 0 Carbohydrate binding module (family 6) MatE PF01554.13 gi|284164741|ref|YP_003403020.1| - 3.1e-62 208.9 32.5 2.8e-36 124.5 8.3 2.6 2 1 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|284164741|ref|YP_003403020.1| - 3.1e-10 40.0 3.7 3.1e-10 40.0 2.5 5.1 2 2 2 4 4 4 1 Polysaccharide biosynthesis C-terminal domain MotA_ExbB PF01618.11 gi|284164741|ref|YP_003403020.1| - 1.3 8.5 6.4 1.3 8.5 0.8 2.5 2 0 0 2 2 2 0 MotA/TolQ/ExbB proton channel family Thi4 PF01946.12 gi|284164742|ref|YP_003403021.1| - 3.1e-61 206.3 0.3 4.9e-49 166.5 0.1 2.2 1 1 1 2 2 2 2 Thi4 family DAO PF01266.19 gi|284164742|ref|YP_003403021.1| - 1.5e-11 43.8 1.1 6.3e-07 28.6 0.1 2.2 1 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|284164742|ref|YP_003403021.1| - 1.8e-11 43.5 0.3 6.3e-08 31.8 0.1 2.3 1 1 1 2 2 2 2 FAD binding domain FAD_oxidored PF12831.2 gi|284164742|ref|YP_003403021.1| - 3.8e-11 42.7 0.1 5.7e-11 42.1 0.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|284164742|ref|YP_003403021.1| - 1.6e-09 37.3 0.0 3e-09 36.3 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.1 gi|284164742|ref|YP_003403021.1| - 2.1e-08 34.0 0.3 4.7e-08 32.9 0.2 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|284164742|ref|YP_003403021.1| - 4.1e-07 28.8 0.0 5.7e-07 28.3 0.0 1.2 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|284164742|ref|YP_003403021.1| - 6.6e-07 29.5 0.0 9.3e-07 29.1 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|284164742|ref|YP_003403021.1| - 7.4e-07 29.2 0.7 1.2e-06 28.5 0.1 1.7 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|284164742|ref|YP_003403021.1| - 0.00015 20.7 0.1 0.017 14.0 0.0 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein Pyr_redox PF00070.22 gi|284164742|ref|YP_003403021.1| - 0.00021 21.6 0.5 0.00059 20.1 0.1 1.9 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|284164742|ref|YP_003403021.1| - 0.00023 19.9 0.1 0.062 11.9 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase NAD_binding_7 PF13241.1 gi|284164742|ref|YP_003403021.1| - 0.00029 21.0 0.0 0.00075 19.7 0.0 1.7 1 1 0 1 1 1 1 Putative NAD(P)-binding NAD_binding_9 PF13454.1 gi|284164742|ref|YP_003403021.1| - 0.0005 19.8 0.3 0.0021 17.8 0.1 2.0 2 0 0 2 2 2 1 FAD-NAD(P)-binding GIDA PF01134.17 gi|284164742|ref|YP_003403021.1| - 0.001 18.0 0.1 0.0017 17.2 0.0 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Amino_oxidase PF01593.19 gi|284164742|ref|YP_003403021.1| - 0.0015 17.6 0.0 0.0038 16.3 0.0 1.7 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase Shikimate_DH PF01488.15 gi|284164742|ref|YP_003403021.1| - 0.0032 17.5 0.0 0.046 13.8 0.0 2.3 3 0 0 3 3 2 1 Shikimate / quinate 5-dehydrogenase TrkA_N PF02254.13 gi|284164742|ref|YP_003403021.1| - 0.054 13.5 0.4 0.13 12.2 0.0 1.8 2 0 0 2 2 2 0 TrkA-N domain Flavi_glycoprot PF00869.15 gi|284164743|ref|YP_003403022.1| - 0.014 14.4 0.7 0.017 14.1 0.5 1.0 1 0 0 1 1 1 0 Flavivirus glycoprotein, central and dimerisation domains zf-ribbon_3 PF13248.1 gi|284164743|ref|YP_003403022.1| - 0.021 14.0 0.3 0.043 13.0 0.1 1.6 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|284164743|ref|YP_003403022.1| - 0.022 14.5 0.0 0.025 14.3 0.0 1.2 1 0 0 1 1 1 0 Double zinc ribbon DNA_ligase_ZBD PF03119.11 gi|284164743|ref|YP_003403022.1| - 0.033 13.9 0.8 0.048 13.3 0.5 1.3 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain Auto_anti-p27 PF06677.7 gi|284164743|ref|YP_003403022.1| - 0.073 12.8 0.2 0.11 12.2 0.1 1.2 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) 4HBT_2 PF13279.1 gi|284164745|ref|YP_003403024.1| - 4.6e-18 65.8 0.0 5.8e-18 65.4 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.17 gi|284164745|ref|YP_003403024.1| - 1.2e-16 60.5 0.1 1.9e-16 59.9 0.0 1.3 1 0 0 1 1 1 1 Thioesterase superfamily Acyl-ACP_TE PF01643.12 gi|284164745|ref|YP_003403024.1| - 1.3e-10 40.6 0.1 2.5e-07 29.9 0.0 2.0 1 1 1 2 2 2 2 Acyl-ACP thioesterase 4HBT_3 PF13622.1 gi|284164745|ref|YP_003403024.1| - 0.005 16.6 0.0 0.0055 16.4 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily UPF0014 PF03649.8 gi|284164746|ref|YP_003403025.1| - 8.5e-41 139.7 13.1 1e-40 139.4 9.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0014) ABC_tran PF00005.22 gi|284164747|ref|YP_003403026.1| - 1.2e-33 116.2 0.0 1.6e-33 115.9 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284164747|ref|YP_003403026.1| - 2.6e-10 40.7 0.0 0.00025 21.0 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|284164747|ref|YP_003403026.1| - 8.3e-06 25.1 0.0 0.04 13.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|284164747|ref|YP_003403026.1| - 7.7e-05 22.7 1.0 0.00084 19.3 0.7 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|284164747|ref|YP_003403026.1| - 0.00052 20.8 0.4 0.0012 19.6 0.3 1.8 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|284164747|ref|YP_003403026.1| - 0.0013 17.9 0.0 0.0016 17.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|284164747|ref|YP_003403026.1| - 0.0018 17.7 0.0 0.0031 17.0 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain NACHT PF05729.7 gi|284164747|ref|YP_003403026.1| - 0.0037 16.9 0.0 2.7 7.6 0.0 2.2 2 0 0 2 2 2 2 NACHT domain AAA_22 PF13401.1 gi|284164747|ref|YP_003403026.1| - 0.0044 17.1 0.0 0.017 15.2 0.0 1.8 2 0 0 2 2 2 1 AAA domain SbcCD_C PF13558.1 gi|284164747|ref|YP_003403026.1| - 0.0075 16.1 0.1 0.32 10.9 0.1 2.6 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.1 gi|284164747|ref|YP_003403026.1| - 0.019 14.8 0.2 0.036 13.9 0.1 1.9 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|284164747|ref|YP_003403026.1| - 0.022 13.8 0.0 0.035 13.2 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_10 PF12846.2 gi|284164747|ref|YP_003403026.1| - 0.029 13.8 0.0 0.081 12.3 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain AAA_25 PF13481.1 gi|284164747|ref|YP_003403026.1| - 0.029 13.7 0.1 0.11 11.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|284164747|ref|YP_003403026.1| - 0.048 13.9 0.2 0.37 11.1 0.2 2.5 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|284164747|ref|YP_003403026.1| - 0.052 12.5 0.0 0.26 10.3 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain MMR_HSR1 PF01926.18 gi|284164747|ref|YP_003403026.1| - 0.06 13.3 0.1 0.27 11.1 0.1 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_30 PF13604.1 gi|284164747|ref|YP_003403026.1| - 0.069 12.7 0.0 0.29 10.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|284164747|ref|YP_003403026.1| - 0.14 12.5 0.0 0.21 11.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain Dynamin_N PF00350.18 gi|284164747|ref|YP_003403026.1| - 0.15 11.8 0.0 0.96 9.2 0.0 1.9 2 0 0 2 2 2 0 Dynamin family Methyltransf_11 PF08241.7 gi|284164748|ref|YP_003403027.1| - 4.3e-15 55.9 0.0 6.7e-15 55.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|284164748|ref|YP_003403027.1| - 1.9e-14 53.4 0.0 2.5e-14 53.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|284164748|ref|YP_003403027.1| - 2.4e-12 47.4 0.0 5.1e-12 46.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|284164748|ref|YP_003403027.1| - 2.5e-12 46.8 0.0 3.1e-12 46.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|284164748|ref|YP_003403027.1| - 3.7e-11 43.3 0.0 6e-11 42.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|284164748|ref|YP_003403027.1| - 8.8e-09 35.4 3.0 9e-08 32.1 0.6 2.3 2 0 0 2 2 2 1 Methyltransferase domain PCMT PF01135.14 gi|284164748|ref|YP_003403027.1| - 4.2e-07 29.7 0.0 5.7e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.1 gi|284164748|ref|YP_003403027.1| - 4.5e-07 30.1 0.0 8.2e-07 29.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|284164748|ref|YP_003403027.1| - 1.4e-06 27.6 0.0 1.6e-06 27.3 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family FtsJ PF01728.14 gi|284164748|ref|YP_003403027.1| - 0.00077 19.4 0.0 0.00097 19.1 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase Fibrillarin PF01269.12 gi|284164748|ref|YP_003403027.1| - 0.0043 15.9 0.0 0.0063 15.4 0.0 1.1 1 0 0 1 1 1 1 Fibrillarin RrnaAD PF00398.15 gi|284164748|ref|YP_003403027.1| - 0.01 14.9 0.0 0.014 14.4 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_4 PF02390.12 gi|284164748|ref|YP_003403027.1| - 0.031 13.3 0.0 0.041 12.9 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase Methyltransf_32 PF13679.1 gi|284164748|ref|YP_003403027.1| - 0.061 13.0 0.0 0.096 12.3 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain CMAS PF02353.15 gi|284164748|ref|YP_003403027.1| - 0.077 12.0 0.0 0.12 11.4 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Aldolase_2 PF10120.4 gi|284164749|ref|YP_003403028.1| - 3.5e-48 163.1 0.0 5.4e-48 162.5 0.0 1.3 1 0 0 1 1 1 1 Putative aldolase HTH_3 PF01381.17 gi|284164749|ref|YP_003403028.1| - 3.4e-07 30.0 0.0 7.1e-07 28.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|284164749|ref|YP_003403028.1| - 8.8e-05 22.6 0.3 0.00029 20.9 0.2 2.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|284164749|ref|YP_003403028.1| - 0.0001 22.0 0.0 0.0002 21.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|284164749|ref|YP_003403028.1| - 0.00023 20.4 0.0 0.00061 19.0 0.0 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|284164749|ref|YP_003403028.1| - 0.00033 20.2 0.1 0.0023 17.5 0.0 2.4 2 0 0 2 2 2 1 MarR family HTH_19 PF12844.2 gi|284164749|ref|YP_003403028.1| - 0.0005 20.0 0.0 0.00095 19.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|284164749|ref|YP_003403028.1| - 0.00061 19.1 0.0 0.0022 17.3 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.1 gi|284164749|ref|YP_003403028.1| - 0.00079 18.9 0.0 0.0037 16.8 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_26 PF13443.1 gi|284164749|ref|YP_003403028.1| - 0.0037 17.4 0.0 0.007 16.5 0.0 1.4 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain DUF2481 PF10654.4 gi|284164749|ref|YP_003403028.1| - 0.018 14.6 0.0 0.028 14.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2481) HTH_5 PF01022.15 gi|284164749|ref|YP_003403028.1| - 0.019 14.6 0.2 0.17 11.5 0.0 2.5 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_38 PF13936.1 gi|284164749|ref|YP_003403028.1| - 0.022 14.2 0.0 0.049 13.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|284164749|ref|YP_003403028.1| - 0.043 13.2 0.0 0.13 11.7 0.0 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_20 PF12840.2 gi|284164749|ref|YP_003403028.1| - 0.054 13.3 0.4 1 9.1 0.0 3.0 3 0 0 3 3 3 0 Helix-turn-helix domain F420_ligase PF01996.11 gi|284164749|ref|YP_003403028.1| - 0.065 12.2 0.0 0.093 11.7 0.0 1.3 1 0 0 1 1 1 0 F420-0:Gamma-glutamyl ligase P22_Cro PF14549.1 gi|284164749|ref|YP_003403028.1| - 0.078 12.7 0.0 0.22 11.2 0.0 1.7 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro KorB PF08535.5 gi|284164749|ref|YP_003403028.1| - 0.11 12.6 0.0 0.64 10.2 0.0 2.3 1 1 0 1 1 1 0 KorB domain HTH_17 PF12728.2 gi|284164749|ref|YP_003403028.1| - 0.15 12.3 0.0 0.31 11.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.5 gi|284164749|ref|YP_003403028.1| - 0.24 10.9 2.8 0.83 9.2 0.0 2.9 3 0 0 3 3 2 0 IclR helix-turn-helix domain dUTPase PF00692.14 gi|284164750|ref|YP_003403029.1| - 7.6e-15 54.5 0.0 1.2e-14 53.8 0.0 1.2 1 0 0 1 1 1 1 dUTPase DCD PF06559.6 gi|284164750|ref|YP_003403029.1| - 7.8e-15 54.1 0.0 3.2e-13 48.8 0.0 2.1 1 1 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) PTH2 PF01981.11 gi|284164752|ref|YP_003403031.1| - 1.2e-40 137.8 0.2 1.3e-40 137.6 0.1 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 TP_methylase PF00590.15 gi|284164752|ref|YP_003403031.1| - 0.091 12.4 0.1 0.1 12.2 0.1 1.1 1 0 0 1 1 1 0 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF3017 PF11222.3 gi|284164753|ref|YP_003403032.1| - 3.3 7.5 6.7 1.9 8.3 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3017) TruD PF01142.13 gi|284164754|ref|YP_003403033.1| - 2.3e-90 303.0 0.0 5.1e-89 298.5 0.0 2.0 1 1 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) Baseplate_J PF04865.9 gi|284164754|ref|YP_003403033.1| - 0.03 13.6 0.1 0.068 12.4 0.1 1.6 1 0 0 1 1 1 0 Baseplate J-like protein UCR_14kD PF02271.11 gi|284164754|ref|YP_003403033.1| - 0.13 12.0 0.4 2.3 8.0 0.1 2.3 2 0 0 2 2 2 0 Ubiquinol-cytochrome C reductase complex 14kD subunit DUF4199 PF13858.1 gi|284164756|ref|YP_003403035.1| - 0.87 9.4 0.0 0.87 9.4 0.0 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF4199) zf-ribbon_3 PF13248.1 gi|284164757|ref|YP_003403036.1| - 3.4e-16 57.8 14.4 1.7e-08 33.3 1.3 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|284164757|ref|YP_003403036.1| - 7.7e-12 44.8 11.7 1.1e-11 44.3 8.1 1.3 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|284164757|ref|YP_003403036.1| - 1.4e-10 40.2 12.6 4.7e-05 22.7 0.7 2.3 2 0 0 2 2 2 2 zinc-ribbon domain UPF0547 PF10571.4 gi|284164757|ref|YP_003403036.1| - 3.9e-08 32.8 13.2 1.9e-05 24.2 0.9 2.9 2 1 0 2 2 2 2 Uncharacterised protein family UPF0547 OrfB_Zn_ribbon PF07282.6 gi|284164757|ref|YP_003403036.1| - 0.00013 21.5 7.6 0.01 15.4 0.3 3.2 1 1 2 3 3 3 2 Putative transposase DNA-binding domain Prok-RING_1 PF14446.1 gi|284164757|ref|YP_003403036.1| - 0.00042 19.9 7.7 0.015 15.0 1.3 3.1 2 1 1 3 3 3 1 Prokaryotic RING finger family 1 zinc-ribbons_6 PF07191.7 gi|284164757|ref|YP_003403036.1| - 0.0005 19.8 5.2 0.15 11.8 0.3 2.4 1 1 0 2 2 2 2 zinc-ribbons Zn-ribbon_8 PF09723.5 gi|284164757|ref|YP_003403036.1| - 0.0023 17.8 12.9 0.042 13.8 2.3 3.3 2 1 1 3 3 3 1 Zinc ribbon domain PolC_DP2 PF03833.8 gi|284164757|ref|YP_003403036.1| - 0.0034 15.1 2.6 0.0043 14.8 1.8 1.1 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 Nudix_N_2 PF14803.1 gi|284164757|ref|YP_003403036.1| - 0.0041 16.7 11.3 0.63 9.7 0.0 4.0 3 1 0 3 3 3 1 Nudix N-terminal zf-NADH-PPase PF09297.6 gi|284164757|ref|YP_003403036.1| - 0.0045 16.4 13.2 0.14 11.6 0.0 3.9 2 1 2 4 4 4 1 NADH pyrophosphatase zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|284164757|ref|YP_003403036.1| - 0.012 14.9 17.0 0.31 10.4 2.2 3.8 1 1 3 4 4 4 0 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.2 gi|284164757|ref|YP_003403036.1| - 0.012 15.3 15.4 0.076 12.8 0.5 4.0 1 1 2 3 3 3 0 Transposase zinc-ribbon domain DUF2116 PF09889.4 gi|284164757|ref|YP_003403036.1| - 0.027 14.2 0.5 0.65 9.8 0.1 2.4 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) RNA_POL_M_15KD PF02150.11 gi|284164757|ref|YP_003403036.1| - 0.032 13.9 0.3 0.032 13.9 0.2 3.1 2 1 1 3 3 3 0 RNA polymerases M/15 Kd subunit zf-IS66 PF13005.2 gi|284164757|ref|YP_003403036.1| - 0.036 14.0 15.3 0.72 9.8 0.0 4.2 3 1 2 5 5 5 0 zinc-finger binding domain of transposase IS66 C1_1 PF00130.17 gi|284164757|ref|YP_003403036.1| - 0.039 13.6 2.0 0.092 12.4 0.5 2.1 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-C4_Topoisom PF01396.14 gi|284164757|ref|YP_003403036.1| - 0.053 13.0 10.7 4.9 6.7 0.0 4.0 4 0 0 4 4 4 0 Topoisomerase DNA binding C4 zinc finger NMD3 PF04981.8 gi|284164757|ref|YP_003403036.1| - 0.09 11.8 3.0 0.36 9.8 2.2 1.7 1 1 0 1 1 1 0 NMD3 family DUF3090 PF11290.3 gi|284164757|ref|YP_003403036.1| - 0.11 11.9 3.3 0.24 10.8 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3090) Cript PF10235.4 gi|284164757|ref|YP_003403036.1| - 0.12 12.7 3.9 1.3 9.3 0.3 2.1 1 1 1 2 2 2 0 Microtubule-associated protein CRIPT DUF3039 PF11238.3 gi|284164757|ref|YP_003403036.1| - 0.12 11.7 0.2 0.12 11.7 0.2 2.0 3 0 0 3 3 1 0 Protein of unknown function (DUF3039) TerY-C PF15616.1 gi|284164757|ref|YP_003403036.1| - 0.13 12.2 10.3 0.066 13.1 3.4 2.1 1 1 1 2 2 2 0 TerY-C metal binding domain HypA PF01155.14 gi|284164757|ref|YP_003403036.1| - 0.21 11.3 8.0 3.4 7.3 2.8 2.5 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family zinc_ribbon_5 PF13719.1 gi|284164757|ref|YP_003403036.1| - 0.25 10.9 8.8 19 4.9 0.1 4.1 4 0 0 4 4 4 0 zinc-ribbon domain zf-DHHC PF01529.15 gi|284164757|ref|YP_003403036.1| - 0.3 10.4 2.5 3.9 6.8 0.1 2.3 1 1 1 2 2 2 0 DHHC palmitoyltransferase DNA_ligase_ZBD PF03119.11 gi|284164757|ref|YP_003403036.1| - 0.53 10.0 17.1 4 7.2 0.0 4.8 5 0 0 5 5 5 0 NAD-dependent DNA ligase C4 zinc finger domain DUF329 PF03884.9 gi|284164757|ref|YP_003403036.1| - 0.58 9.7 11.2 1.1 8.8 1.1 3.2 1 1 2 3 3 3 0 Domain of unknown function (DUF329) DUF555 PF04475.7 gi|284164757|ref|YP_003403036.1| - 0.6 10.1 3.7 2.1 8.3 0.0 2.8 1 1 0 2 2 2 0 Protein of unknown function (DUF555) zf-C3HC4_3 PF13920.1 gi|284164757|ref|YP_003403036.1| - 1 9.0 7.9 1.9e+02 1.8 6.2 2.9 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Rubredoxin PF00301.15 gi|284164757|ref|YP_003403036.1| - 1.2 9.1 16.3 8 6.4 0.1 4.5 4 1 1 5 5 4 0 Rubredoxin zf-C3HC4 PF00097.20 gi|284164757|ref|YP_003403036.1| - 1.3 8.7 5.0 6.5 6.5 0.2 3.1 3 0 0 3 3 3 0 Zinc finger, C3HC4 type (RING finger) IBR PF01485.16 gi|284164757|ref|YP_003403036.1| - 1.9 8.3 8.7 44 4.0 6.0 2.7 1 1 0 1 1 1 0 IBR domain zinc_ribbon_4 PF13717.1 gi|284164757|ref|YP_003403036.1| - 1.9 8.2 11.2 22 4.8 0.1 4.1 3 1 1 4 4 4 0 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|284164757|ref|YP_003403036.1| - 2.5 7.6 12.6 15 5.1 0.1 4.1 3 1 1 4 4 4 0 A2L zinc ribbon domain DUF35_N PF12172.3 gi|284164757|ref|YP_003403036.1| - 2.9 7.9 17.8 15 5.6 0.2 3.4 2 2 1 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Lar_restr_allev PF14354.1 gi|284164757|ref|YP_003403036.1| - 2.9 8.2 14.4 3.8e+02 1.4 10.0 3.3 1 1 0 1 1 1 0 Restriction alleviation protein Lar DUF1272 PF06906.6 gi|284164757|ref|YP_003403036.1| - 3.7 7.4 14.8 24 4.8 4.9 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF1272) YhfH PF14149.1 gi|284164757|ref|YP_003403036.1| - 4.4 7.1 8.3 18 5.2 0.7 3.3 3 0 0 3 3 3 0 YhfH-like protein Sgf11 PF08209.6 gi|284164757|ref|YP_003403036.1| - 4.5 6.6 16.1 9.7 5.6 0.0 4.2 3 1 1 4 4 4 0 Sgf11 (transcriptional regulation protein) GFA PF04828.9 gi|284164757|ref|YP_003403036.1| - 4.9 7.1 8.1 41 4.2 2.2 3.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme Zn_Tnp_IS91 PF14319.1 gi|284164757|ref|YP_003403036.1| - 5.4 6.5 9.2 12 5.4 1.6 2.8 1 1 0 2 2 2 0 Transposase zinc-binding domain Ogr_Delta PF04606.7 gi|284164757|ref|YP_003403036.1| - 8.7 6.0 13.1 19 5.0 0.6 4.2 4 0 0 4 4 4 0 Ogr/Delta-like zinc finger SurE PF01975.12 gi|284164758|ref|YP_003403037.1| - 2.8e-51 173.6 0.0 3.8e-51 173.2 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE DUF2103 PF09876.4 gi|284164759|ref|YP_003403038.1| - 3e-44 148.9 0.4 4.6e-44 148.3 0.3 1.3 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2103) HlyD_2 PF12700.2 gi|284164759|ref|YP_003403038.1| - 0.089 11.9 0.0 0.13 11.3 0.0 1.1 1 0 0 1 1 1 0 HlyD family secretion protein Ribosomal_L37ae PF01780.14 gi|284164761|ref|YP_003403040.1| - 3.6e-25 87.6 0.3 4.1e-25 87.4 0.2 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family DNA_RNApol_7kD PF03604.8 gi|284164762|ref|YP_003403041.1| - 3.1e-10 39.3 6.2 3.7e-10 39.0 4.3 1.1 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit HypA PF01155.14 gi|284164762|ref|YP_003403041.1| - 0.00053 19.6 0.5 0.00055 19.6 0.4 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|284164762|ref|YP_003403041.1| - 0.0006 18.9 0.2 0.024 13.8 0.0 2.0 2 0 0 2 2 2 1 zinc-ribbon domain DUF329 PF03884.9 gi|284164762|ref|YP_003403041.1| - 0.0011 18.5 0.6 0.46 10.0 0.0 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF329) Zn_Tnp_IS1595 PF12760.2 gi|284164762|ref|YP_003403041.1| - 0.0033 17.1 4.6 0.095 12.5 0.1 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain Cys_rich_CPXG PF14255.1 gi|284164762|ref|YP_003403041.1| - 0.0075 16.0 0.2 0.029 14.1 0.0 2.0 2 0 0 2 2 2 1 Cysteine-rich CPXCG A2L_zn_ribbon PF08792.5 gi|284164762|ref|YP_003403041.1| - 0.0078 15.6 1.7 0.35 10.3 0.0 2.1 1 1 1 2 2 2 1 A2L zinc ribbon domain zf-CHCC PF10276.4 gi|284164762|ref|YP_003403041.1| - 0.008 15.9 0.2 0.013 15.2 0.1 1.4 1 0 0 1 1 1 1 Zinc-finger domain zinc_ribbon_2 PF13240.1 gi|284164762|ref|YP_003403041.1| - 0.012 15.0 3.9 0.093 12.2 2.7 2.0 1 1 0 1 1 1 0 zinc-ribbon domain DZR PF12773.2 gi|284164762|ref|YP_003403041.1| - 0.012 15.3 0.9 0.032 14.0 0.7 1.7 1 1 0 1 1 1 0 Double zinc ribbon Sgf11 PF08209.6 gi|284164762|ref|YP_003403041.1| - 0.02 14.2 3.0 0.52 9.6 0.2 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) DUF951 PF06107.6 gi|284164762|ref|YP_003403041.1| - 0.027 13.9 2.0 1.1 8.7 0.1 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF951) zf-ISL3 PF14690.1 gi|284164762|ref|YP_003403041.1| - 0.03 14.3 1.6 0.15 12.1 0.1 2.0 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Prok-RING_1 PF14446.1 gi|284164762|ref|YP_003403041.1| - 0.031 13.9 1.4 0.12 12.1 1.1 1.7 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 zf-Di19 PF05605.7 gi|284164762|ref|YP_003403041.1| - 0.039 14.0 0.2 0.61 10.2 0.0 2.0 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding CpXC PF14353.1 gi|284164762|ref|YP_003403041.1| - 0.044 13.7 1.6 1.3 8.9 0.1 2.0 1 1 1 2 2 2 0 CpXC protein zf-HIT PF04438.11 gi|284164762|ref|YP_003403041.1| - 0.048 13.2 3.8 0.81 9.3 0.5 2.0 2 0 0 2 2 2 0 HIT zinc finger OrfB_Zn_ribbon PF07282.6 gi|284164762|ref|YP_003403041.1| - 0.064 12.9 3.0 0.09 12.4 1.9 1.5 1 1 0 1 1 1 0 Putative transposase DNA-binding domain RNHCP PF12647.2 gi|284164762|ref|YP_003403041.1| - 0.075 12.8 0.6 0.11 12.3 0.4 1.3 1 1 0 1 1 1 0 RNHCP domain TF_Zn_Ribbon PF08271.7 gi|284164762|ref|YP_003403041.1| - 0.082 12.2 3.6 0.16 11.3 2.5 1.6 1 1 0 1 1 1 0 TFIIB zinc-binding TFIIS_C PF01096.13 gi|284164762|ref|YP_003403041.1| - 0.084 12.5 1.7 4.7 6.9 0.0 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zinc-ribbons_6 PF07191.7 gi|284164762|ref|YP_003403041.1| - 0.091 12.5 0.6 0.15 11.8 0.4 1.4 1 1 0 1 1 1 0 zinc-ribbons zf-C4_Topoisom PF01396.14 gi|284164762|ref|YP_003403041.1| - 0.093 12.2 1.5 0.49 9.9 0.1 2.0 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Spt4 PF06093.8 gi|284164762|ref|YP_003403041.1| - 0.096 12.5 0.2 0.1 12.5 0.2 1.0 1 0 0 1 1 1 0 Spt4/RpoE2 zinc finger Lar_restr_allev PF14354.1 gi|284164762|ref|YP_003403041.1| - 0.1 12.9 0.7 0.28 11.5 0.0 1.8 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-AN1 PF01428.11 gi|284164762|ref|YP_003403041.1| - 0.1 12.4 1.4 0.29 11.0 1.1 1.7 1 1 1 2 2 2 0 AN1-like Zinc finger zf-C2H2_4 PF13894.1 gi|284164762|ref|YP_003403041.1| - 0.11 12.8 1.6 2.2 8.8 0.0 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger Zn_ribbon_recom PF13408.1 gi|284164762|ref|YP_003403041.1| - 0.12 12.6 2.0 1.2 9.4 0.1 2.1 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain C1_1 PF00130.17 gi|284164762|ref|YP_003403041.1| - 0.12 12.0 0.6 0.16 11.7 0.4 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) TerY-C PF15616.1 gi|284164762|ref|YP_003403041.1| - 0.13 12.1 0.3 0.15 11.9 0.2 1.3 1 1 0 1 1 1 0 TerY-C metal binding domain zf-RING_3 PF14369.1 gi|284164762|ref|YP_003403041.1| - 0.19 11.7 2.1 0.32 11.0 1.5 1.4 1 0 0 1 1 1 0 zinc-finger DUF3268 PF11672.3 gi|284164762|ref|YP_003403041.1| - 0.21 11.6 1.0 2.7 8.1 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3268) zinc_ribbon_4 PF13717.1 gi|284164762|ref|YP_003403041.1| - 0.23 11.2 6.2 13 5.6 4.3 2.3 1 1 0 1 1 1 0 zinc-ribbon domain zf-TFIIB PF13453.1 gi|284164762|ref|YP_003403041.1| - 0.25 10.5 1.9 0.63 9.2 1.2 1.7 1 1 1 2 2 2 0 Transcription factor zinc-finger zinc_ribbon_5 PF13719.1 gi|284164762|ref|YP_003403041.1| - 0.27 10.8 6.4 17 5.1 4.5 2.3 1 1 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|284164762|ref|YP_003403041.1| - 0.67 9.9 5.2 5.3 7.0 3.6 2.0 1 1 0 1 1 1 0 Zinc ribbon domain zf-NADH-PPase PF09297.6 gi|284164762|ref|YP_003403041.1| - 0.72 9.4 0.1 0.72 9.4 0.0 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Mu-like_Com PF10122.4 gi|284164762|ref|YP_003403041.1| - 1.4 8.0 6.5 2.7 7.1 0.7 2.1 1 1 1 2 2 2 0 Mu-like prophage protein Com zf-C2H2 PF00096.21 gi|284164762|ref|YP_003403041.1| - 1.5 9.3 4.1 8.8 6.8 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type UPF0547 PF10571.4 gi|284164762|ref|YP_003403041.1| - 3.7 7.3 6.7 0.62 9.8 1.3 1.9 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Pcc1 PF09341.5 gi|284164763|ref|YP_003403042.1| - 3.3e-16 59.0 0.3 3.6e-16 58.9 0.2 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 DUF2243 PF10002.4 gi|284164764|ref|YP_003403043.1| - 7.4e-31 106.8 9.4 8.5e-31 106.6 6.5 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2243) DUF998 PF06197.8 gi|284164764|ref|YP_003403043.1| - 0.0068 15.7 8.4 0.011 15.0 5.7 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF998) Peptidase_A8 PF01252.13 gi|284164764|ref|YP_003403043.1| - 0.3 10.6 7.2 0.11 12.1 2.7 1.8 1 1 1 2 2 2 0 Signal peptidase (SPase) II Iron_transport PF10634.4 gi|284164765|ref|YP_003403044.1| - 2.9e-06 27.2 0.0 6.4e-06 26.1 0.0 1.5 1 0 0 1 1 1 1 Fe2+ transport protein Prefoldin_2 PF01920.15 gi|284164766|ref|YP_003403045.1| - 4.1e-25 87.5 21.0 4.6e-25 87.4 14.5 1.0 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin PF02996.12 gi|284164766|ref|YP_003403045.1| - 0.00036 20.1 6.6 0.00036 20.1 4.5 2.6 1 1 2 3 3 3 1 Prefoldin subunit ALIX_LYPXL_bnd PF13949.1 gi|284164766|ref|YP_003403045.1| - 0.0016 17.4 8.6 0.002 17.1 6.0 1.1 1 0 0 1 1 1 1 ALIX V-shaped domain binding to HIV AAA_27 PF13514.1 gi|284164766|ref|YP_003403045.1| - 0.0036 15.0 10.3 0.005 14.6 7.2 1.1 1 0 0 1 1 1 1 AAA domain DUF3584 PF12128.3 gi|284164766|ref|YP_003403045.1| - 0.0049 14.2 9.4 0.0059 14.0 6.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) Fib_alpha PF08702.5 gi|284164766|ref|YP_003403045.1| - 0.034 14.2 3.8 0.22 11.6 0.2 2.1 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family Laminin_II PF06009.7 gi|284164766|ref|YP_003403045.1| - 0.037 13.7 8.6 0.063 13.0 6.0 1.4 1 1 0 1 1 1 0 Laminin Domain II MutS_III PF05192.13 gi|284164766|ref|YP_003403045.1| - 0.039 13.7 1.1 0.051 13.3 0.8 1.1 1 0 0 1 1 1 0 MutS domain III RNA_pol_Rpb1_1 PF04997.7 gi|284164766|ref|YP_003403045.1| - 0.041 13.1 2.5 0.053 12.7 1.7 1.0 1 0 0 1 1 1 0 RNA polymerase Rpb1, domain 1 FlaC_arch PF05377.6 gi|284164766|ref|YP_003403045.1| - 0.042 13.7 4.3 0.042 13.7 3.0 2.5 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) DUF342 PF03961.8 gi|284164766|ref|YP_003403045.1| - 0.079 11.3 4.5 0.12 10.7 3.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF342) eIF3_subunit PF08597.5 gi|284164766|ref|YP_003403045.1| - 0.082 12.4 7.5 0.12 11.9 5.2 1.1 1 0 0 1 1 1 0 Translation initiation factor eIF3 subunit Syntaxin_2 PF14523.1 gi|284164766|ref|YP_003403045.1| - 0.092 12.7 3.1 0.15 12.0 2.2 1.3 1 1 0 1 1 1 0 Syntaxin-like protein DUF2036 PF09724.4 gi|284164766|ref|YP_003403045.1| - 0.13 11.3 4.4 0.16 11.0 3.1 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2036) CDC37_N PF03234.9 gi|284164766|ref|YP_003403045.1| - 0.16 12.2 9.9 0.2 11.9 6.8 1.1 1 0 0 1 1 1 0 Cdc37 N terminal kinase binding DUF2379 PF09543.5 gi|284164766|ref|YP_003403045.1| - 0.17 11.8 6.3 0.073 13.0 1.3 2.1 1 1 2 3 3 2 0 Protein of unknown function (DUF2379) AKAP_110 PF05716.8 gi|284164766|ref|YP_003403045.1| - 0.18 9.7 0.9 0.21 9.5 0.6 1.0 1 0 0 1 1 1 0 A-kinase anchor protein 110 kDa (AKAP 110) BLOC1_2 PF10046.4 gi|284164766|ref|YP_003403045.1| - 0.29 11.2 10.7 2.5 8.2 0.7 2.1 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 NPV_P10 PF05531.7 gi|284164766|ref|YP_003403045.1| - 0.35 11.1 7.5 0.92 9.8 0.4 2.2 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein Laminin_I PF06008.9 gi|284164766|ref|YP_003403045.1| - 0.41 9.9 15.4 0.78 9.0 1.3 2.0 1 1 0 2 2 2 0 Laminin Domain I Prominin PF05478.6 gi|284164766|ref|YP_003403045.1| - 0.52 7.7 2.8 1 6.8 0.0 1.8 1 1 0 2 2 2 0 Prominin Syntaxin-6_N PF09177.6 gi|284164766|ref|YP_003403045.1| - 0.59 10.5 12.8 3.1 8.2 5.9 2.4 1 1 1 2 2 2 0 Syntaxin 6, N-terminal DUF2353 PF09789.4 gi|284164766|ref|YP_003403045.1| - 0.81 8.8 11.5 1.1 8.4 8.0 1.1 1 0 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) PilJ PF13675.1 gi|284164766|ref|YP_003403045.1| - 0.91 9.8 9.9 14 6.0 6.5 2.2 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term Plasmid_stabil PF05016.9 gi|284164766|ref|YP_003403045.1| - 0.93 9.9 3.5 17 5.8 0.2 2.1 2 0 0 2 2 2 0 Plasmid stabilisation system protein GAS PF13851.1 gi|284164766|ref|YP_003403045.1| - 1 8.5 15.2 1.6 7.8 10.5 1.2 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Med10 PF09748.4 gi|284164766|ref|YP_003403045.1| - 1.1 9.1 4.6 11 5.7 3.2 2.0 1 1 0 1 1 1 0 Transcription factor subunit Med10 of Mediator complex ING PF12998.2 gi|284164766|ref|YP_003403045.1| - 1.2 9.4 11.3 2.1 8.6 7.6 1.8 1 1 0 1 1 1 0 Inhibitor of growth proteins N-terminal histone-binding DUF4164 PF13747.1 gi|284164766|ref|YP_003403045.1| - 1.3 9.2 15.8 0.39 10.8 2.6 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) V_ATPase_I PF01496.14 gi|284164766|ref|YP_003403045.1| - 1.4 6.6 13.8 2.4 5.9 9.6 1.3 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family Fzo_mitofusin PF04799.8 gi|284164766|ref|YP_003403045.1| - 1.5 8.1 11.3 1.8 7.9 1.9 2.1 1 1 1 2 2 2 0 fzo-like conserved region Sigma70_ner PF04546.8 gi|284164766|ref|YP_003403045.1| - 1.5 8.3 16.8 0.057 13.0 1.6 2.0 1 1 1 2 2 2 0 Sigma-70, non-essential region WXG100 PF06013.7 gi|284164766|ref|YP_003403045.1| - 1.8 8.6 11.4 12 5.9 0.1 2.6 2 1 0 2 2 2 0 Proteins of 100 residues with WXG PRP1_N PF06424.7 gi|284164766|ref|YP_003403045.1| - 2.4 8.5 8.4 4.2 7.6 5.8 1.4 1 0 0 1 1 1 0 PRP1 splicing factor, N-terminal XhlA PF10779.4 gi|284164766|ref|YP_003403045.1| - 2.5 8.0 15.5 0.2 11.5 2.1 2.2 2 0 0 2 2 2 0 Haemolysin XhlA PCEMA1 PF07418.6 gi|284164766|ref|YP_003403045.1| - 2.8 7.2 10.6 3.5 6.8 7.3 1.0 1 0 0 1 1 1 0 Acidic phosphoprotein precursor PCEMA1 DUF4404 PF14357.1 gi|284164766|ref|YP_003403045.1| - 2.9 8.3 11.8 3.5 8.1 1.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4404) Cortex-I_coil PF09304.5 gi|284164766|ref|YP_003403045.1| - 3.3 7.8 19.8 0.25 11.3 4.4 2.1 1 1 1 2 2 2 0 Cortexillin I, coiled coil KfrA_N PF11740.3 gi|284164766|ref|YP_003403045.1| - 3.3 8.1 22.1 0.53 10.7 4.0 2.1 2 0 0 2 2 2 0 Plasmid replication region DNA-binding N-term ADIP PF11559.3 gi|284164766|ref|YP_003403045.1| - 3.4 7.5 15.3 0.31 10.9 1.8 2.0 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding TraF_2 PF13729.1 gi|284164766|ref|YP_003403045.1| - 3.9 6.1 7.8 6.1 5.5 1.2 2.0 1 1 1 2 2 2 0 F plasmid transfer operon, TraF, protein OEP PF02321.13 gi|284164766|ref|YP_003403045.1| - 3.9 7.0 12.8 0.48 9.9 0.3 2.1 2 0 0 2 2 2 0 Outer membrane efflux protein DUF2408 PF10303.4 gi|284164766|ref|YP_003403045.1| - 4 7.5 9.6 1.1e+02 2.9 6.7 2.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) Spc24 PF08286.6 gi|284164766|ref|YP_003403045.1| - 4.5 7.0 19.7 1 9.1 3.7 2.2 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 DUF607 PF04678.8 gi|284164766|ref|YP_003403045.1| - 4.6 7.1 9.4 33 4.3 6.5 1.9 1 1 0 1 1 1 0 Protein of unknown function, DUF607 Mnd1 PF03962.10 gi|284164766|ref|YP_003403045.1| - 4.8 6.8 16.3 2.4 7.7 1.2 2.0 1 1 1 2 2 2 0 Mnd1 family Cep57_CLD PF14073.1 gi|284164766|ref|YP_003403045.1| - 5.2 6.8 19.8 0.23 11.2 5.7 2.1 1 1 1 2 2 2 0 Centrosome localisation domain of Cep57 TPR_MLP1_2 PF07926.7 gi|284164766|ref|YP_003403045.1| - 5.3 6.8 21.3 22 4.8 14.8 1.8 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein Snapin_Pallidin PF14712.1 gi|284164766|ref|YP_003403045.1| - 5.7 7.3 12.0 4.8 7.5 1.7 2.3 2 0 0 2 2 2 0 Snapin/Pallidin Med21 PF11221.3 gi|284164766|ref|YP_003403045.1| - 5.8 6.8 16.8 1.7 8.6 2.6 2.1 2 0 0 2 2 2 0 Subunit 21 of Mediator complex DUF964 PF06133.6 gi|284164766|ref|YP_003403045.1| - 5.8 6.9 18.0 3.8 7.5 7.5 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF964) BRE1 PF08647.6 gi|284164766|ref|YP_003403045.1| - 6.2 6.8 15.1 7.1 6.6 2.6 2.1 1 1 1 2 2 2 0 BRE1 E3 ubiquitin ligase Viral_P18 PF04521.8 gi|284164766|ref|YP_003403045.1| - 6.4 6.2 10.1 0.38 10.1 1.3 2.1 2 0 0 2 2 2 0 ssRNA positive strand viral 18kD cysteine rich protein DUF1664 PF07889.7 gi|284164766|ref|YP_003403045.1| - 7.8 6.3 9.8 1.2 8.9 1.2 2.0 1 1 0 2 2 2 0 Protein of unknown function (DUF1664) HSP70 PF00012.15 gi|284164766|ref|YP_003403045.1| - 8.2 4.1 10.6 9.9 3.9 7.4 1.0 1 0 0 1 1 1 0 Hsp70 protein DUF3194 PF11419.3 gi|284164767|ref|YP_003403046.1| - 0.00063 19.9 0.1 0.0007 19.7 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3194) RVT_2 PF07727.9 gi|284164767|ref|YP_003403046.1| - 0.068 12.1 0.0 0.08 11.9 0.0 1.1 1 0 0 1 1 1 0 Reverse transcriptase (RNA-dependent DNA polymerase) NmrA PF05368.8 gi|284164768|ref|YP_003403047.1| - 2.2e-49 167.8 0.0 2.9e-49 167.4 0.0 1.1 1 0 0 1 1 1 1 NmrA-like family NAD_binding_10 PF13460.1 gi|284164768|ref|YP_003403047.1| - 2.1e-20 73.5 0.8 2.7e-20 73.1 0.5 1.2 1 0 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|284164768|ref|YP_003403047.1| - 2.1e-07 30.6 0.5 5.8e-07 29.1 0.1 1.8 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|284164768|ref|YP_003403047.1| - 5e-06 25.4 0.1 7.4e-06 24.8 0.1 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family adh_short PF00106.20 gi|284164768|ref|YP_003403047.1| - 0.00023 21.1 1.3 0.00035 20.5 0.1 1.8 2 0 0 2 2 2 1 short chain dehydrogenase TrkA_N PF02254.13 gi|284164768|ref|YP_003403047.1| - 0.00024 21.1 0.1 0.00043 20.2 0.1 1.5 1 0 0 1 1 1 1 TrkA-N domain KR PF08659.5 gi|284164768|ref|YP_003403047.1| - 0.00032 20.4 0.4 0.0012 18.5 0.2 2.0 1 1 1 2 2 2 1 KR domain Polysacc_synt_2 PF02719.10 gi|284164768|ref|YP_003403047.1| - 0.025 13.5 0.3 0.1 11.4 0.2 1.9 1 1 0 1 1 1 0 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|284164768|ref|YP_003403047.1| - 0.035 13.0 0.0 0.056 12.3 0.0 1.3 1 0 0 1 1 1 0 Male sterility protein Saccharop_dh PF03435.13 gi|284164768|ref|YP_003403047.1| - 0.041 12.8 0.1 0.092 11.7 0.1 1.6 1 0 0 1 1 1 0 Saccharopine dehydrogenase Semialdhyde_dh PF01118.19 gi|284164768|ref|YP_003403047.1| - 0.11 12.8 0.3 0.26 11.5 0.1 1.7 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain GATase PF00117.23 gi|284164769|ref|YP_003403048.1| - 1.8e-35 122.1 0.0 2e-35 121.9 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|284164769|ref|YP_003403048.1| - 7e-14 51.7 0.5 1.2e-12 47.6 0.0 2.5 1 1 1 2 2 2 1 Peptidase C26 GATase_3 PF07685.9 gi|284164769|ref|YP_003403048.1| - 0.034 13.7 0.2 0.074 12.6 0.0 1.6 2 0 0 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain OapA_N PF08525.6 gi|284164771|ref|YP_003403050.1| - 1.8 8.3 4.0 3.1 7.6 2.8 1.3 1 0 0 1 1 1 0 Opacity-associated protein A N-terminal motif Class_IIIsignal PF04021.7 gi|284164771|ref|YP_003403050.1| - 2.2 8.0 5.4 3.5 7.4 3.7 1.4 1 0 0 1 1 1 0 Class III signal peptide AAA PF00004.24 gi|284164772|ref|YP_003403051.1| - 2.1e-45 154.1 2.1 2.1e-45 154.1 0.1 2.1 3 1 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|284164772|ref|YP_003403051.1| - 4.6e-09 36.4 0.0 1.7e-08 34.5 0.0 2.1 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|284164772|ref|YP_003403051.1| - 1.7e-07 30.5 0.1 5.2e-07 28.9 0.0 1.7 1 1 1 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|284164772|ref|YP_003403051.1| - 1.5e-06 28.3 3.0 3.5e-05 23.9 0.2 2.9 2 2 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|284164772|ref|YP_003403051.1| - 2.5e-06 27.2 2.6 8e-06 25.6 0.3 2.7 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|284164772|ref|YP_003403051.1| - 4.8e-06 26.6 3.9 6.3e-05 23.0 0.1 3.4 2 2 0 2 2 2 1 AAA ATPase domain AAA_17 PF13207.1 gi|284164772|ref|YP_003403051.1| - 6.9e-06 26.8 1.0 2.1e-05 25.3 0.1 2.3 2 1 0 2 2 2 1 AAA domain DUF815 PF05673.8 gi|284164772|ref|YP_003403051.1| - 0.00014 20.9 0.0 0.00031 19.7 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_18 PF13238.1 gi|284164772|ref|YP_003403051.1| - 0.00023 21.4 0.4 0.0052 17.0 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|284164772|ref|YP_003403051.1| - 0.00048 20.0 0.1 0.0018 18.2 0.0 1.9 2 0 0 2 2 2 1 AAA domain GrpE PF01025.14 gi|284164772|ref|YP_003403051.1| - 0.0011 18.5 9.4 0.0011 18.5 6.5 2.3 2 0 0 2 2 2 1 GrpE AAA_19 PF13245.1 gi|284164772|ref|YP_003403051.1| - 0.0011 18.6 0.1 0.0032 17.1 0.1 1.8 1 0 0 1 1 1 1 Part of AAA domain TIP49 PF06068.8 gi|284164772|ref|YP_003403051.1| - 0.0011 17.7 1.7 0.0014 17.4 0.0 1.9 2 1 0 2 2 2 1 TIP49 C-terminus IstB_IS21 PF01695.12 gi|284164772|ref|YP_003403051.1| - 0.0011 18.3 0.4 0.003 17.0 0.0 1.9 2 0 0 2 2 2 1 IstB-like ATP binding protein Mg_chelatase PF01078.16 gi|284164772|ref|YP_003403051.1| - 0.0012 18.0 0.2 0.0034 16.5 0.1 1.8 1 1 1 2 2 1 1 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|284164772|ref|YP_003403051.1| - 0.0016 18.0 0.1 0.042 13.5 0.0 2.4 1 1 0 2 2 2 1 NACHT domain AAA_33 PF13671.1 gi|284164772|ref|YP_003403051.1| - 0.0018 18.1 0.1 0.011 15.6 0.0 2.2 1 1 0 2 2 2 1 AAA domain AAA_24 PF13479.1 gi|284164772|ref|YP_003403051.1| - 0.0018 17.8 0.1 0.0055 16.3 0.0 2.0 2 0 0 2 2 2 1 AAA domain ATG16 PF08614.6 gi|284164772|ref|YP_003403051.1| - 0.0024 17.7 10.9 0.0024 17.7 7.6 2.8 2 1 1 3 3 3 1 Autophagy protein 16 (ATG16) Sigma54_activat PF00158.21 gi|284164772|ref|YP_003403051.1| - 0.0025 17.3 0.2 0.055 12.9 0.0 2.6 2 1 0 2 2 2 1 Sigma-54 interaction domain AAA_25 PF13481.1 gi|284164772|ref|YP_003403051.1| - 0.0029 17.0 5.6 0.04 13.3 0.1 3.0 2 1 1 3 3 3 1 AAA domain AAA_28 PF13521.1 gi|284164772|ref|YP_003403051.1| - 0.0032 17.4 1.0 0.0069 16.3 0.0 2.3 2 1 0 2 2 2 1 AAA domain RNA_helicase PF00910.17 gi|284164772|ref|YP_003403051.1| - 0.0034 17.5 0.0 0.0093 16.1 0.0 1.8 1 0 0 1 1 1 1 RNA helicase Zeta_toxin PF06414.7 gi|284164772|ref|YP_003403051.1| - 0.0042 16.2 0.3 0.013 14.6 0.0 1.9 2 0 0 2 2 2 1 Zeta toxin Sigma54_activ_2 PF14532.1 gi|284164772|ref|YP_003403051.1| - 0.011 15.7 0.3 0.066 13.2 0.0 2.5 2 1 0 2 2 2 0 Sigma-54 interaction domain AAA_3 PF07726.6 gi|284164772|ref|YP_003403051.1| - 0.013 15.0 0.8 0.072 12.7 0.0 2.5 2 2 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|284164772|ref|YP_003403051.1| - 0.018 14.7 2.8 0.1 12.3 0.0 2.8 2 1 0 2 2 2 0 Archaeal ATPase bZIP_1 PF00170.16 gi|284164772|ref|YP_003403051.1| - 0.02 14.8 13.4 0.2 11.6 4.0 2.8 1 1 1 2 2 2 0 bZIP transcription factor NB-ARC PF00931.17 gi|284164772|ref|YP_003403051.1| - 0.024 13.5 0.0 0.082 11.7 0.0 1.9 1 0 0 1 1 1 0 NB-ARC domain Parvo_NS1 PF01057.12 gi|284164772|ref|YP_003403051.1| - 0.034 13.0 0.0 0.072 11.9 0.0 1.5 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 IncA PF04156.9 gi|284164772|ref|YP_003403051.1| - 0.051 13.1 17.0 0.68 9.4 9.9 2.3 1 1 1 2 2 2 0 IncA protein KaiC PF06745.8 gi|284164772|ref|YP_003403051.1| - 0.053 12.6 8.5 0.3 10.1 0.0 3.7 3 1 1 4 4 4 0 KaiC ADIP PF11559.3 gi|284164772|ref|YP_003403051.1| - 0.081 12.8 9.0 0.22 11.4 6.2 1.6 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding Kinetocho_Slk19 PF12709.2 gi|284164772|ref|YP_003403051.1| - 0.12 12.4 7.3 0.072 13.1 3.1 2.1 2 0 0 2 2 1 0 Central kinetochore-associated Fmp27_WPPW PF10359.4 gi|284164772|ref|YP_003403051.1| - 0.19 10.0 6.5 0.31 9.4 4.5 1.3 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain ABC_tran PF00005.22 gi|284164772|ref|YP_003403051.1| - 0.33 11.2 0.0 0.33 11.2 0.0 2.7 2 1 0 2 2 1 0 ABC transporter DUF3373 PF11853.3 gi|284164772|ref|YP_003403051.1| - 0.34 9.4 2.8 0.56 8.6 1.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3373) Atg14 PF10186.4 gi|284164772|ref|YP_003403051.1| - 0.37 9.6 4.6 0.63 8.9 3.2 1.4 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 NTPase_1 PF03266.10 gi|284164772|ref|YP_003403051.1| - 0.77 9.4 8.2 0.23 11.1 0.2 3.5 3 2 0 3 3 3 0 NTPase AAA_11 PF13086.1 gi|284164772|ref|YP_003403051.1| - 0.8 9.2 7.1 0.53 9.8 0.0 2.4 1 1 1 2 2 2 0 AAA domain Viral_P18 PF04521.8 gi|284164772|ref|YP_003403051.1| - 1 8.8 3.9 2.4 7.5 2.7 1.7 1 0 0 1 1 1 0 ssRNA positive strand viral 18kD cysteine rich protein V_ATPase_I PF01496.14 gi|284164772|ref|YP_003403051.1| - 1.8 6.2 4.7 2.6 5.7 3.3 1.3 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family AAA_23 PF13476.1 gi|284164772|ref|YP_003403051.1| - 2.8 8.2 0.0 2.8 8.2 0.0 2.7 2 1 0 2 2 1 0 AAA domain Dzip-like_N PF13815.1 gi|284164772|ref|YP_003403051.1| - 4.1 7.2 9.0 5.5 6.8 5.1 2.1 2 0 0 2 2 1 0 Iguana/Dzip1-like DAZ-interacting protein N-terminal DUF972 PF06156.8 gi|284164772|ref|YP_003403051.1| - 6 7.2 12.5 9.1 6.6 6.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF972) HTH_24 PF13412.1 gi|284164773|ref|YP_003403052.1| - 2e-07 30.2 0.0 3e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GntR PF00392.16 gi|284164773|ref|YP_003403052.1| - 0.00028 20.2 0.0 0.00044 19.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR_2 PF12802.2 gi|284164773|ref|YP_003403052.1| - 0.00031 20.3 0.0 0.00043 19.9 0.0 1.2 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.12 gi|284164773|ref|YP_003403052.1| - 0.00058 19.3 0.0 0.0007 19.0 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_Crp_2 PF13545.1 gi|284164773|ref|YP_003403052.1| - 0.00076 19.2 0.0 0.00094 18.9 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.17 gi|284164773|ref|YP_003403052.1| - 0.0026 17.4 0.1 0.0035 17.0 0.0 1.2 1 0 0 1 1 1 1 MarR family Sigma70_r4_2 PF08281.7 gi|284164773|ref|YP_003403052.1| - 0.01 15.2 0.0 0.02 14.3 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_28 PF13518.1 gi|284164773|ref|YP_003403052.1| - 0.011 15.7 0.0 0.014 15.4 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.14 gi|284164773|ref|YP_003403052.1| - 0.016 14.9 0.1 0.02 14.5 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|284164773|ref|YP_003403052.1| - 0.017 14.9 0.0 0.022 14.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.1 gi|284164773|ref|YP_003403052.1| - 0.027 14.7 0.0 0.037 14.3 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_36 PF13730.1 gi|284164773|ref|YP_003403052.1| - 0.043 13.9 0.0 0.069 13.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain RNA_pol_Rpc34 PF05158.7 gi|284164773|ref|YP_003403052.1| - 0.047 12.8 0.0 0.05 12.7 0.0 1.1 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit HTH_23 PF13384.1 gi|284164773|ref|YP_003403052.1| - 0.069 12.8 0.0 0.094 12.4 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain HTH_12 PF08461.5 gi|284164773|ref|YP_003403052.1| - 0.078 12.7 0.1 0.21 11.3 0.1 1.9 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain RepL PF05732.6 gi|284164773|ref|YP_003403052.1| - 0.089 12.0 0.0 0.11 11.6 0.0 1.1 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_11 PF08279.7 gi|284164773|ref|YP_003403052.1| - 0.096 12.3 0.1 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 HTH domain Replic_Relax PF13814.1 gi|284164773|ref|YP_003403052.1| - 0.13 12.0 0.3 0.29 10.9 0.2 1.6 1 1 1 2 2 2 0 Replication-relaxation Rrf2 PF02082.15 gi|284164773|ref|YP_003403052.1| - 0.13 12.3 0.0 0.18 11.9 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator Metallophos_2 PF12850.2 gi|284164774|ref|YP_003403053.1| - 1.1e-15 57.7 0.2 2.2e-15 56.8 0.1 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|284164774|ref|YP_003403053.1| - 1.4e-12 47.4 0.8 2.3e-12 46.7 0.6 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase AAA_13 PF13166.1 gi|284164775|ref|YP_003403054.1| - 8.3e-15 54.3 57.9 6.4e-05 21.6 0.0 5.2 2 1 3 5 5 5 5 AAA domain AAA_23 PF13476.1 gi|284164775|ref|YP_003403054.1| - 1.2e-12 48.5 95.4 0.00074 19.9 47.7 6.2 1 1 1 2 2 1 1 AAA domain AAA_21 PF13304.1 gi|284164775|ref|YP_003403054.1| - 5e-12 46.3 1.0 5.6e-06 26.5 0.0 3.3 3 1 0 3 3 3 2 AAA domain AAA_15 PF13175.1 gi|284164775|ref|YP_003403054.1| - 5.3e-10 38.9 0.0 1.6e-05 24.1 0.0 2.9 2 1 0 2 2 2 2 AAA ATPase domain IncA PF04156.9 gi|284164775|ref|YP_003403054.1| - 3.9e-08 33.1 118.3 3.8e-05 23.3 8.9 5.8 2 2 4 6 6 6 3 IncA protein SMC_N PF02463.14 gi|284164775|ref|YP_003403054.1| - 7e-08 31.9 57.9 9.1e-07 28.3 40.1 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|284164775|ref|YP_003403054.1| - 9e-07 28.3 0.0 1.8e-06 27.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_27 PF13514.1 gi|284164775|ref|YP_003403054.1| - 5.4e-06 24.4 27.5 5.4e-06 24.4 19.0 4.8 1 1 2 4 4 3 1 AAA domain Spc7 PF08317.6 gi|284164775|ref|YP_003403054.1| - 1e-05 24.3 87.5 0.011 14.3 6.5 5.3 2 2 2 4 4 4 3 Spc7 kinetochore protein ABC_ATPase PF09818.4 gi|284164775|ref|YP_003403054.1| - 1.6e-05 23.6 0.6 0.0019 16.8 0.0 2.6 2 0 0 2 2 2 1 Predicted ATPase of the ABC class DUF3584 PF12128.3 gi|284164775|ref|YP_003403054.1| - 1.7e-05 22.4 104.8 0.00068 17.1 28.2 4.0 3 1 1 4 4 4 3 Protein of unknown function (DUF3584) SbcCD_C PF13558.1 gi|284164775|ref|YP_003403054.1| - 0.00016 21.4 0.4 0.0011 18.8 0.0 2.5 2 0 0 2 2 2 1 Putative exonuclease SbcCD, C subunit Laminin_II PF06009.7 gi|284164775|ref|YP_003403054.1| - 0.00021 21.0 54.1 0.0075 16.0 3.5 6.7 2 2 5 7 7 7 3 Laminin Domain II TPR_MLP1_2 PF07926.7 gi|284164775|ref|YP_003403054.1| - 0.00034 20.3 2.3 0.00034 20.3 1.6 7.0 1 1 5 6 6 6 3 TPR/MLP1/MLP2-like protein Reo_sigmaC PF04582.7 gi|284164775|ref|YP_003403054.1| - 0.0011 18.2 13.3 0.35 10.0 0.2 4.6 3 1 2 5 5 5 2 Reovirus sigma C capsid protein EzrA PF06160.7 gi|284164775|ref|YP_003403054.1| - 0.0027 15.9 13.3 0.0027 15.9 9.2 4.3 2 2 2 4 4 4 2 Septation ring formation regulator, EzrA Baculo_PEP_C PF04513.7 gi|284164775|ref|YP_003403054.1| - 0.0063 16.3 14.0 0.11 12.3 0.1 5.0 3 2 2 6 6 6 1 Baculovirus polyhedron envelope protein, PEP, C terminus NPV_P10 PF05531.7 gi|284164775|ref|YP_003403054.1| - 0.013 15.7 25.9 0.35 11.1 0.2 8.1 5 4 5 10 10 9 0 Nucleopolyhedrovirus P10 protein Viral_helicase1 PF01443.13 gi|284164775|ref|YP_003403054.1| - 0.026 14.0 0.2 0.08 12.4 0.0 1.9 2 0 0 2 2 1 0 Viral (Superfamily 1) RNA helicase Mating_N PF12731.2 gi|284164775|ref|YP_003403054.1| - 0.03 14.2 2.7 0.12 12.2 0.1 3.0 2 0 0 2 2 2 0 Mating-type protein beta 1 NACHT PF05729.7 gi|284164775|ref|YP_003403054.1| - 0.048 13.3 0.0 0.14 11.7 0.0 1.8 1 0 0 1 1 1 0 NACHT domain ABC_tran PF00005.22 gi|284164775|ref|YP_003403054.1| - 0.076 13.3 0.0 0.076 13.3 0.0 5.3 2 1 0 3 3 1 0 ABC transporter AAA_33 PF13671.1 gi|284164775|ref|YP_003403054.1| - 0.089 12.6 0.0 0.089 12.6 0.0 4.3 6 0 0 6 6 2 0 AAA domain AAA_19 PF13245.1 gi|284164775|ref|YP_003403054.1| - 0.1 12.3 0.0 0.42 10.4 0.0 2.1 1 0 0 1 1 1 0 Part of AAA domain AAA_22 PF13401.1 gi|284164775|ref|YP_003403054.1| - 0.12 12.4 0.1 0.12 12.4 0.1 4.0 2 1 0 3 3 3 0 AAA domain APG6 PF04111.7 gi|284164775|ref|YP_003403054.1| - 0.13 11.2 108.3 0.46 9.4 9.9 6.1 2 2 4 6 6 6 0 Autophagy protein Apg6 CDO_I PF05995.7 gi|284164775|ref|YP_003403054.1| - 0.56 9.3 3.3 0.63 9.1 0.0 2.8 3 0 0 3 3 2 0 Cysteine dioxygenase type I DUF342 PF03961.8 gi|284164775|ref|YP_003403054.1| - 3.1 6.1 60.9 1.2 7.4 3.2 5.2 1 1 3 5 5 5 0 Protein of unknown function (DUF342) Atg14 PF10186.4 gi|284164775|ref|YP_003403054.1| - 3.1 6.6 90.3 0.12 11.2 7.3 5.5 2 2 3 5 5 5 0 UV radiation resistance protein and autophagy-related subunit 14 DUF4200 PF13863.1 gi|284164775|ref|YP_003403054.1| - 7.4 6.5 119.4 0.52 10.2 16.0 7.4 2 2 5 7 7 7 0 Domain of unknown function (DUF4200) DNA_pol_B PF00136.16 gi|284164779|ref|YP_003403058.1| - 1.3e-62 212.1 0.0 4.1e-62 210.4 0.0 1.7 1 1 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|284164779|ref|YP_003403058.1| - 4.7e-34 117.7 0.0 1.8e-33 115.8 0.0 1.9 1 1 1 2 2 2 1 DNA polymerase family B, exonuclease domain DUF346 PF03984.8 gi|284164779|ref|YP_003403058.1| - 0.057 12.8 0.0 0.14 11.6 0.0 1.6 1 0 0 1 1 1 0 Repeat of unknown function (DUF346) DNA_pol_B_2 PF03175.8 gi|284164779|ref|YP_003403058.1| - 0.077 11.6 0.0 0.91 8.1 0.0 2.1 2 0 0 2 2 2 0 DNA polymerase type B, organellar and viral ABC_tran PF00005.22 gi|284164780|ref|YP_003403059.1| - 2.9e-16 60.0 0.0 1e-15 58.2 0.0 1.8 1 1 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|284164780|ref|YP_003403059.1| - 4.2e-06 26.1 0.3 0.022 13.9 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|284164780|ref|YP_003403059.1| - 4.5e-05 23.5 0.4 0.0033 17.4 0.3 2.2 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|284164780|ref|YP_003403059.1| - 5.8e-05 23.8 0.5 0.00036 21.3 0.4 2.5 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|284164780|ref|YP_003403059.1| - 0.00013 22.1 0.2 0.12 12.5 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|284164780|ref|YP_003403059.1| - 0.0011 18.6 0.6 2 8.1 0.0 2.7 1 1 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_29 PF13555.1 gi|284164780|ref|YP_003403059.1| - 0.0013 18.2 0.0 0.0023 17.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|284164780|ref|YP_003403059.1| - 0.0024 18.2 5.7 0.037 14.3 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|284164780|ref|YP_003403059.1| - 0.004 17.2 0.1 0.34 11.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|284164780|ref|YP_003403059.1| - 0.017 15.0 0.0 0.025 14.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|284164780|ref|YP_003403059.1| - 0.035 13.4 0.0 0.086 12.2 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|284164780|ref|YP_003403059.1| - 0.068 13.4 1.8 0.21 11.9 0.9 2.5 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|284164780|ref|YP_003403059.1| - 0.14 11.5 0.3 0.56 9.6 0.0 1.8 2 0 0 2 2 2 0 AAA-like domain AAA_13 PF13166.1 gi|284164780|ref|YP_003403059.1| - 0.16 10.3 0.6 0.19 10.1 0.4 1.4 1 1 0 1 1 1 0 AAA domain MutS_V PF00488.16 gi|284164780|ref|YP_003403059.1| - 0.17 11.2 0.0 1.5 8.2 0.0 2.0 2 0 0 2 2 2 0 MutS domain V UPF0051 PF01458.12 gi|284164781|ref|YP_003403060.1| - 2.2e-70 236.6 0.3 3.1e-70 236.2 0.2 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) DinI PF06183.8 gi|284164781|ref|YP_003403060.1| - 0.12 12.4 0.3 0.5 10.4 0.1 2.1 2 0 0 2 2 2 0 DinI-like family UPF0051 PF01458.12 gi|284164782|ref|YP_003403061.1| - 1e-65 221.4 1.5 1.3e-65 221.1 1.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) Rubrerythrin PF02915.12 gi|284164784|ref|YP_003403063.1| - 3.4e-05 24.1 5.6 5.9e-05 23.4 2.9 1.9 1 1 1 2 2 2 1 Rubrerythrin Metal_resist PF13801.1 gi|284164784|ref|YP_003403063.1| - 0.00059 19.8 3.1 0.0012 18.8 2.1 1.4 1 0 0 1 1 1 1 Heavy-metal resistance DUF892 PF05974.7 gi|284164784|ref|YP_003403063.1| - 0.0089 15.8 4.7 0.017 14.9 0.2 2.5 2 1 0 2 2 2 1 Domain of unknown function (DUF892) Ferritin_2 PF13668.1 gi|284164784|ref|YP_003403063.1| - 0.01 15.7 4.9 0.094 12.6 0.1 2.1 1 1 1 2 2 2 0 Ferritin-like domain HrpJ PF07201.6 gi|284164784|ref|YP_003403063.1| - 0.05 13.6 2.0 0.05 13.6 0.7 1.5 1 1 0 1 1 1 0 HrpJ-like domain FUSC PF04632.7 gi|284164784|ref|YP_003403063.1| - 0.073 11.5 0.9 0.077 11.4 0.6 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family Peptidase_M41 PF01434.13 gi|284164784|ref|YP_003403063.1| - 0.11 12.0 0.8 0.16 11.4 0.6 1.3 1 0 0 1 1 1 0 Peptidase family M41 NusB PF01029.13 gi|284164784|ref|YP_003403063.1| - 0.33 10.9 2.7 0.52 10.2 0.2 2.1 2 1 0 2 2 2 0 NusB family AAA_16 PF13191.1 gi|284164784|ref|YP_003403063.1| - 0.73 9.7 4.6 0.92 9.4 2.8 1.4 1 1 0 1 1 1 0 AAA ATPase domain Ferritin PF00210.19 gi|284164784|ref|YP_003403063.1| - 1.2 8.8 9.3 1.3 8.7 5.5 1.9 2 1 0 2 2 2 0 Ferritin-like domain CCDC-167 PF15188.1 gi|284164784|ref|YP_003403063.1| - 2.4 8.1 6.9 0.38 10.7 0.8 2.4 2 1 0 2 2 2 0 Coiled-coil domain-containing protein 167 Fe_dep_repress PF01325.14 gi|284164785|ref|YP_003403064.1| - 1.4e-18 66.5 0.1 3.2e-18 65.3 0.0 1.7 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.10 gi|284164785|ref|YP_003403064.1| - 3e-11 42.8 0.0 5.6e-11 41.9 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain HTH_27 PF13463.1 gi|284164785|ref|YP_003403064.1| - 3e-05 24.2 0.0 4.8e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|284164785|ref|YP_003403064.1| - 5.2e-05 22.8 0.0 0.0001 21.8 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|284164785|ref|YP_003403064.1| - 6.1e-05 22.6 0.0 0.00011 21.8 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|284164785|ref|YP_003403064.1| - 7.6e-05 22.4 0.0 0.00019 21.1 0.0 1.7 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain TrmB PF01978.14 gi|284164785|ref|YP_003403064.1| - 0.00021 20.9 0.0 0.00033 20.2 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|284164785|ref|YP_003403064.1| - 0.00036 20.2 0.0 0.00064 19.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|284164785|ref|YP_003403064.1| - 0.00038 19.7 0.0 0.00065 19.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|284164785|ref|YP_003403064.1| - 0.0022 18.0 0.0 0.0035 17.4 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator FeoC PF09012.5 gi|284164785|ref|YP_003403064.1| - 0.01 15.5 0.0 0.019 14.6 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator GntR PF00392.16 gi|284164785|ref|YP_003403064.1| - 0.017 14.5 0.0 0.044 13.2 0.0 1.9 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_36 PF13730.1 gi|284164785|ref|YP_003403064.1| - 0.041 14.0 0.0 0.07 13.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|284164785|ref|YP_003403064.1| - 0.042 13.5 0.0 0.067 12.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|284164785|ref|YP_003403064.1| - 0.043 13.4 0.0 0.077 12.6 0.0 1.5 1 0 0 1 1 1 0 HTH domain HTH_12 PF08461.5 gi|284164785|ref|YP_003403064.1| - 0.049 13.3 0.3 0.11 12.2 0.0 1.8 2 1 0 2 2 1 0 Ribonuclease R winged-helix domain HTH_IclR PF09339.5 gi|284164785|ref|YP_003403064.1| - 0.057 13.0 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain Penicillinase_R PF03965.11 gi|284164785|ref|YP_003403064.1| - 0.067 13.2 0.0 0.25 11.4 0.0 1.8 1 1 0 1 1 1 0 Penicillinase repressor HTH_AsnC-type PF13404.1 gi|284164785|ref|YP_003403064.1| - 0.092 12.3 0.0 0.27 10.8 0.0 1.8 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain DUF4423 PF14394.1 gi|284164785|ref|YP_003403064.1| - 0.1 12.1 0.0 0.15 11.5 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) DUF2250 PF10007.4 gi|284164785|ref|YP_003403064.1| - 0.13 12.1 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) PLDc_2 PF13091.1 gi|284164786|ref|YP_003403065.1| - 9.3e-39 132.0 0.0 2.2e-22 79.1 0.0 2.2 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.17 gi|284164786|ref|YP_003403065.1| - 7.7e-08 31.8 3.0 6.1e-07 29.0 0.2 2.7 3 0 0 3 3 3 1 Phospholipase D Active site motif Regulator_TrmB PF11495.3 gi|284164786|ref|YP_003403065.1| - 0.0021 17.0 1.2 1.8 7.4 0.0 2.8 2 2 1 3 3 3 2 Archaeal transcriptional regulator TrmB DUF1669 PF07894.7 gi|284164786|ref|YP_003403065.1| - 0.19 10.9 0.4 5 6.2 0.1 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF1669) HEAT_2 PF13646.1 gi|284164787|ref|YP_003403066.1| - 1.5e-19 70.0 10.5 8.9e-14 51.5 3.8 4.6 3 1 2 5 5 5 3 HEAT repeats HEAT_PBS PF03130.11 gi|284164787|ref|YP_003403066.1| - 1.1e-13 50.2 19.7 9.2e-06 25.6 0.5 6.5 7 0 0 7 7 7 4 PBS lyase HEAT-like repeat HEAT_EZ PF13513.1 gi|284164787|ref|YP_003403066.1| - 6.8e-08 32.7 10.6 0.0013 19.1 0.7 3.8 4 0 0 4 4 4 2 HEAT-like repeat HEAT PF02985.17 gi|284164787|ref|YP_003403066.1| - 1.3e-06 27.9 0.6 0.018 15.0 0.1 3.4 3 0 0 3 3 3 2 HEAT repeat Arm PF00514.18 gi|284164787|ref|YP_003403066.1| - 0.00014 21.5 0.2 2.1 8.2 0.0 3.5 1 1 2 3 3 3 1 Armadillo/beta-catenin-like repeat PilJ PF13675.1 gi|284164787|ref|YP_003403066.1| - 0.003 17.8 11.8 1.6 9.0 0.5 4.3 2 2 2 5 5 5 2 Type IV pili methyl-accepting chemotaxis transducer N-term IncA PF04156.9 gi|284164787|ref|YP_003403066.1| - 0.036 13.6 11.1 0.54 9.8 1.0 2.7 1 1 1 2 2 2 0 IncA protein DUF2999 PF11212.3 gi|284164787|ref|YP_003403066.1| - 0.086 12.8 0.0 0.21 11.6 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2999) DUF2353 PF09789.4 gi|284164787|ref|YP_003403066.1| - 0.15 11.3 5.9 0.25 10.5 4.1 1.3 1 0 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) NPV_P10 PF05531.7 gi|284164787|ref|YP_003403066.1| - 0.61 10.3 4.8 4.3 7.6 0.0 3.6 3 1 0 3 3 3 0 Nucleopolyhedrovirus P10 protein CENP-F_leu_zip PF10473.4 gi|284164787|ref|YP_003403066.1| - 0.69 9.7 10.5 0.2 11.4 1.0 2.9 3 0 0 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 V_ATPase_I PF01496.14 gi|284164787|ref|YP_003403066.1| - 6.9 4.3 4.9 8.9 4.0 3.3 1.3 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family CDP-OH_P_transf PF01066.16 gi|284164788|ref|YP_003403067.1| - 8.6e-09 35.6 12.2 8.6e-09 35.6 8.5 2.3 1 1 1 2 2 2 1 CDP-alcohol phosphatidyltransferase Copper-bind PF00127.15 gi|284164789|ref|YP_003403068.1| - 1.3e-12 47.7 0.1 3e-12 46.6 0.1 1.6 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|284164789|ref|YP_003403068.1| - 5e-05 23.1 0.1 0.002 18.0 0.0 2.1 1 1 0 1 1 1 1 Cupredoxin-like domain PEPCK_ATP PF01293.15 gi|284164790|ref|YP_003403069.1| - 1.6e-60 204.9 0.0 3e-60 204.0 0.0 1.3 1 1 0 1 1 1 1 Phosphoenolpyruvate carboxykinase PEPCK PF00821.13 gi|284164790|ref|YP_003403069.1| - 0.00034 18.9 0.0 0.00046 18.4 0.0 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase LDB19 PF13002.2 gi|284164792|ref|YP_003403071.1| - 0.13 11.7 0.0 0.13 11.7 0.0 1.0 1 0 0 1 1 1 0 Arrestin_N terminal like CutA1 PF03091.10 gi|284164793|ref|YP_003403072.1| - 1.1e-26 92.4 0.0 1.2e-26 92.3 0.0 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein YebG PF07130.7 gi|284164793|ref|YP_003403072.1| - 0.022 14.4 0.1 0.037 13.7 0.0 1.4 1 0 0 1 1 1 0 YebG protein Ribosomal_L11 PF00298.14 gi|284164794|ref|YP_003403073.1| - 5.5e-22 77.6 0.0 8.3e-22 77.1 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L11_N PF03946.9 gi|284164794|ref|YP_003403073.1| - 1.2e-19 69.4 0.1 1.9e-19 68.8 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Lactamase_B_3 PF13483.1 gi|284164795|ref|YP_003403074.1| - 3.7e-11 42.9 0.0 7.2e-11 42.0 0.0 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|284164795|ref|YP_003403074.1| - 1e-06 28.4 1.0 1.7e-06 27.7 0.7 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|284164795|ref|YP_003403074.1| - 0.00049 19.8 0.5 0.0018 17.9 0.4 2.0 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily SseC PF04888.7 gi|284164796|ref|YP_003403075.1| - 5.1 6.3 7.9 7.7 5.7 5.4 1.2 1 0 0 1 1 1 0 Secretion system effector C (SseC) like family Ribosomal_L1 PF00687.16 gi|284164797|ref|YP_003403076.1| - 8e-43 146.3 0.0 9.6e-43 146.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L10 PF00466.15 gi|284164798|ref|YP_003403077.1| - 8.7e-25 86.5 0.0 1.5e-24 85.7 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L10 CobT PF06213.7 gi|284164798|ref|YP_003403077.1| - 0.0032 16.6 11.0 0.0052 15.9 7.6 1.3 1 0 0 1 1 1 1 Cobalamin biosynthesis protein CobT Ribosomal_60s PF00428.14 gi|284164799|ref|YP_003403078.1| - 5.2e-15 55.6 13.5 7.4e-15 55.1 9.3 1.3 1 0 0 1 1 1 1 60s Acidic ribosomal protein NOA36 PF06524.7 gi|284164799|ref|YP_003403078.1| - 1.9 7.6 6.7 2.2 7.4 4.7 1.1 1 0 0 1 1 1 0 NOA36 protein TctA PF01970.11 gi|284164800|ref|YP_003403079.1| - 1.3e-61 208.3 47.0 1.5e-61 208.0 32.6 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family BtpA PF03437.10 gi|284164801|ref|YP_003403080.1| - 7.7e-87 290.7 2.1 8.9e-87 290.5 1.5 1.0 1 0 0 1 1 1 1 BtpA family Asp_Glu_race PF01177.17 gi|284164801|ref|YP_003403080.1| - 0.0033 17.3 1.7 0.0072 16.2 1.1 1.6 1 1 0 1 1 1 1 Asp/Glu/Hydantoin racemase PcrB PF01884.12 gi|284164801|ref|YP_003403080.1| - 0.0036 16.5 3.4 0.11 11.7 0.7 2.5 1 1 1 2 2 2 2 PcrB family FlpD PF02662.11 gi|284164801|ref|YP_003403080.1| - 0.0096 15.6 2.7 1.7 8.3 0.1 2.6 1 1 1 2 2 2 2 Methyl-viologen-reducing hydrogenase, delta subunit Trp_syntA PF00290.15 gi|284164801|ref|YP_003403080.1| - 0.021 13.3 0.4 0.033 12.7 0.3 1.3 1 0 0 1 1 1 0 Tryptophan synthase alpha chain FMN_dh PF01070.13 gi|284164801|ref|YP_003403080.1| - 0.12 11.2 10.5 0.2 10.4 4.5 2.2 2 1 0 2 2 2 0 FMN-dependent dehydrogenase adh_short PF00106.20 gi|284164802|ref|YP_003403081.1| - 8.9e-29 100.5 11.8 1.3e-28 100.0 8.2 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|284164802|ref|YP_003403081.1| - 2.3e-20 73.4 0.1 2.7e-20 73.1 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|284164802|ref|YP_003403081.1| - 7e-15 55.1 6.8 1e-14 54.5 4.7 1.3 1 1 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|284164802|ref|YP_003403081.1| - 1.3e-09 37.8 0.5 2.1e-09 37.1 0.4 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|284164802|ref|YP_003403081.1| - 0.00017 20.4 0.1 0.00022 20.0 0.1 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|284164802|ref|YP_003403081.1| - 0.0023 16.8 2.7 0.0086 14.9 1.4 2.1 2 1 0 2 2 2 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|284164802|ref|YP_003403081.1| - 0.0026 16.6 0.0 0.0035 16.2 0.0 1.1 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|284164802|ref|YP_003403081.1| - 0.0031 17.5 8.0 0.0074 16.3 5.6 1.7 1 1 0 1 1 1 1 NADH(P)-binding 3HCDH_N PF02737.13 gi|284164802|ref|YP_003403081.1| - 0.0078 15.8 1.3 0.018 14.7 0.9 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|284164802|ref|YP_003403081.1| - 0.0087 16.4 0.6 0.029 14.8 0.3 1.9 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Glyco_trans_4_4 PF13579.1 gi|284164802|ref|YP_003403081.1| - 0.034 14.3 9.3 0.27 11.3 1.5 2.3 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.6 gi|284164802|ref|YP_003403081.1| - 0.039 13.4 1.7 1.9 7.9 0.0 2.2 2 0 0 2 2 2 0 Starch synthase catalytic domain ApbA PF02558.11 gi|284164802|ref|YP_003403081.1| - 0.1 12.0 0.2 0.16 11.3 0.2 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NmrA PF05368.8 gi|284164802|ref|YP_003403081.1| - 0.14 11.3 1.4 0.23 10.6 0.9 1.3 1 0 0 1 1 1 0 NmrA-like family Glyco_transf_4 PF13439.1 gi|284164802|ref|YP_003403081.1| - 0.2 11.3 0.9 1.1 8.9 0.2 2.0 2 0 0 2 2 2 0 Glycosyltransferase Family 4 DFP PF04127.10 gi|284164802|ref|YP_003403081.1| - 1.4 8.4 5.3 0.85 9.1 1.0 2.4 2 1 1 3 3 3 0 DNA / pantothenate metabolism flavoprotein Aldedh PF00171.17 gi|284164803|ref|YP_003403082.1| - 7.6e-12 44.3 0.1 4.1e-11 41.8 0.1 2.1 1 1 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|284164803|ref|YP_003403082.1| - 0.001 17.8 0.0 0.0015 17.3 0.0 1.1 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) AMP-binding PF00501.23 gi|284164804|ref|YP_003403083.1| - 0.00015 20.3 0.2 0.0035 15.7 0.1 2.1 1 1 0 1 1 1 1 AMP-binding enzyme SSF PF00474.12 gi|284164805|ref|YP_003403084.1| - 2e-39 135.4 23.7 2.5e-39 135.0 16.4 1.1 1 0 0 1 1 1 1 Sodium:solute symporter family ENOD93 PF03386.9 gi|284164805|ref|YP_003403084.1| - 0.088 12.5 1.3 17 5.1 0.0 3.7 3 0 0 3 3 3 0 Early nodulin 93 ENOD93 protein SdpI PF13630.1 gi|284164806|ref|YP_003403085.1| - 0.99 9.1 4.2 1.3 8.7 2.9 1.2 1 0 0 1 1 1 0 SdpI/YhfL protein family COX4_pro PF03626.9 gi|284164806|ref|YP_003403085.1| - 2.1 8.4 9.1 2.6 8.1 6.3 1.2 1 0 0 1 1 1 0 Prokaryotic Cytochrome C oxidase subunit IV DUF1469 PF07332.6 gi|284164806|ref|YP_003403085.1| - 7.1 6.3 9.7 9.1 6.0 6.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) Oxidored_FMN PF00724.15 gi|284164807|ref|YP_003403086.1| - 6.2e-74 249.0 0.0 7.7e-74 248.7 0.0 1.1 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family Dus PF01207.12 gi|284164807|ref|YP_003403086.1| - 0.13 11.0 0.0 0.27 10.0 0.0 1.5 1 1 0 1 1 1 0 Dihydrouridine synthase (Dus) TAT_signal PF10518.4 gi|284164808|ref|YP_003403087.1| - 0.00038 20.2 5.3 0.0006 19.6 3.7 1.2 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Copper-bind PF00127.15 gi|284164808|ref|YP_003403087.1| - 0.0025 18.0 0.0 0.0058 16.8 0.0 1.6 2 0 0 2 2 2 1 Copper binding proteins, plastocyanin/azurin family Sarcoglycan_1 PF04790.8 gi|284164808|ref|YP_003403087.1| - 0.13 11.3 0.0 0.22 10.6 0.0 1.3 1 0 0 1 1 1 0 Sarcoglycan complex subunit protein MS_channel PF00924.13 gi|284164809|ref|YP_003403088.1| - 1.4e-47 161.6 1.9 2.4e-47 160.9 1.3 1.4 1 0 0 1 1 1 1 Mechanosensitive ion channel DUF1460 PF07313.7 gi|284164809|ref|YP_003403088.1| - 0.061 12.5 0.0 0.12 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1460) DUF4212 PF13937.1 gi|284164809|ref|YP_003403088.1| - 9.2 6.3 8.7 8.8 6.4 1.4 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4212) AhpC-TSA PF00578.16 gi|284164810|ref|YP_003403089.1| - 4e-16 58.8 0.0 5.4e-16 58.3 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|284164810|ref|YP_003403089.1| - 1.5e-11 44.0 0.0 2.1e-11 43.5 0.0 1.3 1 0 0 1 1 1 1 Redoxin Thioredoxin_2 PF13098.1 gi|284164810|ref|YP_003403089.1| - 0.00017 21.7 0.0 0.00024 21.2 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|284164810|ref|YP_003403089.1| - 0.0011 19.0 0.0 0.0016 18.4 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like TatD_DNase PF01026.16 gi|284164810|ref|YP_003403089.1| - 0.0042 16.3 0.0 0.0062 15.7 0.0 1.2 1 0 0 1 1 1 1 TatD related DNase GSHPx PF00255.14 gi|284164810|ref|YP_003403089.1| - 0.033 13.5 0.0 0.047 13.0 0.0 1.2 1 0 0 1 1 1 0 Glutathione peroxidase Mur_ligase_C PF02875.16 gi|284164810|ref|YP_003403089.1| - 0.04 13.9 0.0 0.074 13.0 0.0 1.4 1 1 0 1 1 1 0 Mur ligase family, glutamate ligase domain Thioredoxin PF00085.15 gi|284164810|ref|YP_003403089.1| - 0.087 12.5 0.0 0.21 11.3 0.0 1.6 2 0 0 2 2 2 0 Thioredoxin AsnC_trans_reg PF01037.16 gi|284164812|ref|YP_003403091.1| - 4.8e-13 48.6 1.0 6.3e-13 48.2 0.1 1.6 2 0 0 2 2 2 1 AsnC family HTH_AsnC-type PF13404.1 gi|284164812|ref|YP_003403091.1| - 1.9e-05 24.1 0.5 4.3e-05 22.9 0.3 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|284164812|ref|YP_003403091.1| - 2.1e-05 23.8 0.1 4.9e-05 22.6 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|284164812|ref|YP_003403091.1| - 0.00078 19.7 0.0 0.12 12.7 0.0 2.7 2 1 0 2 2 2 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|284164812|ref|YP_003403091.1| - 0.0063 16.1 0.1 0.011 15.3 0.1 1.4 1 0 0 1 1 1 1 MarR family FeoC PF09012.5 gi|284164812|ref|YP_003403091.1| - 0.0073 15.9 0.0 0.013 15.1 0.0 1.3 1 0 0 1 1 1 1 FeoC like transcriptional regulator She9_MDM33 PF05546.6 gi|284164812|ref|YP_003403091.1| - 0.018 14.6 0.4 0.073 12.6 0.1 2.0 2 1 1 3 3 3 0 She9 / Mdm33 family TrmB PF01978.14 gi|284164812|ref|YP_003403091.1| - 0.048 13.3 0.2 0.093 12.4 0.1 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.4 gi|284164812|ref|YP_003403091.1| - 0.069 13.0 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Aminotran_1_2 PF00155.16 gi|284164813|ref|YP_003403092.1| - 2.1e-71 240.8 0.0 2.4e-71 240.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|284164813|ref|YP_003403092.1| - 4.4e-08 32.6 0.0 8.4e-08 31.6 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|284164813|ref|YP_003403092.1| - 0.0001 21.1 0.0 0.00018 20.3 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Claudin_2 PF13903.1 gi|284164814|ref|YP_003403093.1| - 0.12 12.0 2.3 0.23 11.1 1.6 1.6 1 1 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction Trp_oprn_chp PF09534.5 gi|284164814|ref|YP_003403093.1| - 0.6 9.7 3.7 0.81 9.2 2.6 1.5 1 1 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) TauE PF01925.14 gi|284164814|ref|YP_003403093.1| - 2.3 7.6 17.3 22 4.3 12.1 1.8 1 1 0 1 1 1 0 Sulfite exporter TauE/SafE SCP2_2 PF13530.1 gi|284164815|ref|YP_003403094.1| - 7.2e-57 192.2 0.5 1.7e-56 191.0 0.1 1.7 2 0 0 2 2 2 1 Sterol carrier protein domain Acetyltransf_9 PF13527.1 gi|284164815|ref|YP_003403094.1| - 8.8e-27 93.4 0.4 2.5e-26 92.0 0.1 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|284164815|ref|YP_003403094.1| - 5.8e-09 35.9 0.2 6e-07 29.5 0.0 2.3 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|284164815|ref|YP_003403094.1| - 3.7e-05 23.8 0.1 0.00059 19.9 0.0 2.4 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|284164815|ref|YP_003403094.1| - 0.00021 21.2 0.1 0.0028 17.6 0.0 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Terminase_GpA PF05876.7 gi|284164815|ref|YP_003403094.1| - 0.044 12.1 0.0 0.068 11.5 0.0 1.1 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) OCD_Mu_crystall PF02423.10 gi|284164816|ref|YP_003403095.1| - 4.1e-59 199.9 1.6 4.8e-59 199.6 1.1 1.1 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|284164816|ref|YP_003403095.1| - 0.00032 20.8 0.1 0.0012 18.9 0.0 1.9 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|284164816|ref|YP_003403095.1| - 0.0013 19.0 0.2 0.0028 18.0 0.1 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.17 gi|284164816|ref|YP_003403095.1| - 0.04 14.4 0.1 0.094 13.2 0.1 1.6 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold PAS_4 PF08448.5 gi|284164817|ref|YP_003403096.1| - 9.7e-24 83.5 7.5 3.1e-14 52.9 0.3 2.9 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.1 gi|284164817|ref|YP_003403096.1| - 2.5e-18 66.3 0.9 1.3e-08 35.1 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS PF00989.19 gi|284164817|ref|YP_003403096.1| - 4e-15 55.5 0.2 2.8e-06 27.1 0.1 2.7 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|284164817|ref|YP_003403096.1| - 7e-12 44.7 0.1 0.00018 21.2 0.0 2.8 2 0 0 2 2 2 2 PAS domain GAF_3 PF13492.1 gi|284164817|ref|YP_003403096.1| - 9.7e-10 38.6 0.0 2.5e-09 37.2 0.0 1.8 1 0 0 1 1 1 1 GAF domain GAF_2 PF13185.1 gi|284164817|ref|YP_003403096.1| - 1.6e-09 38.4 0.9 5.9e-09 36.5 0.1 2.4 2 0 0 2 2 2 1 GAF domain HATPase_c PF02518.21 gi|284164817|ref|YP_003403096.1| - 1.2e-06 28.1 0.1 3.6e-06 26.6 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|284164817|ref|YP_003403096.1| - 0.012 15.4 2.2 0.084 12.6 0.9 2.9 2 1 0 2 2 2 0 Histidine kinase-like ATPase domain GAF PF01590.21 gi|284164817|ref|YP_003403096.1| - 0.022 14.8 0.1 0.13 12.4 0.0 2.4 2 1 0 2 2 2 0 GAF domain MerR-DNA-bind PF09278.6 gi|284164817|ref|YP_003403096.1| - 0.026 14.8 1.5 0.11 12.9 1.0 2.1 1 0 0 1 1 1 0 MerR, DNA binding HalX PF08663.5 gi|284164818|ref|YP_003403097.1| - 2.8e-18 65.6 6.2 2.8e-18 65.6 4.3 1.7 2 0 0 2 2 2 1 HalX domain Response_reg PF00072.19 gi|284164818|ref|YP_003403097.1| - 3.6e-18 65.6 1.1 5.6e-18 64.9 0.3 1.6 2 0 0 2 2 2 1 Response regulator receiver domain AIRS_C PF02769.17 gi|284164819|ref|YP_003403098.1| - 3.8e-44 150.3 7.1 9.4e-29 100.3 0.9 2.5 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|284164819|ref|YP_003403098.1| - 1.8e-39 133.8 11.7 2.4e-24 85.3 0.3 3.2 3 0 0 3 3 3 2 AIR synthase related protein, N-terminal domain ScdA_N PF04405.9 gi|284164820|ref|YP_003403099.1| - 2.1 7.7 3.9 8.7 5.8 0.0 2.7 1 1 2 3 3 3 0 Domain of Unknown function (DUF542) PAS_9 PF13426.1 gi|284164821|ref|YP_003403100.1| - 8.3e-69 228.5 3.9 3e-14 53.2 0.0 5.6 5 0 0 5 5 5 5 PAS domain PAS_4 PF08448.5 gi|284164821|ref|YP_003403100.1| - 2.2e-53 178.9 19.2 4.5e-13 49.2 0.1 6.4 6 0 0 6 6 6 5 PAS fold PAS PF00989.19 gi|284164821|ref|YP_003403100.1| - 3.5e-46 155.6 3.8 7.6e-10 38.5 0.1 5.8 5 1 0 5 5 5 5 PAS fold PAS_3 PF08447.6 gi|284164821|ref|YP_003403100.1| - 3.8e-40 135.8 0.1 5.5e-16 58.4 0.1 6.9 5 3 0 5 5 5 5 PAS fold PAS_8 PF13188.1 gi|284164821|ref|YP_003403100.1| - 1.2e-28 97.9 1.8 1.5e-06 27.8 0.0 5.8 5 0 0 5 5 5 5 PAS domain HTH_10 PF04967.7 gi|284164821|ref|YP_003403100.1| - 6.2e-17 60.9 0.0 1.7e-16 59.5 0.0 1.8 1 0 0 1 1 1 1 HTH DNA binding domain PAS_7 PF12860.2 gi|284164821|ref|YP_003403100.1| - 2.1e-07 30.9 4.6 0.52 10.3 0.0 5.4 5 1 0 5 5 5 3 PAS fold PAS_10 PF13596.1 gi|284164821|ref|YP_003403100.1| - 2.8e-07 30.7 0.1 0.2 11.9 0.2 4.7 5 0 0 5 5 5 2 PAS domain GAF_2 PF13185.1 gi|284164821|ref|YP_003403100.1| - 2.9e-05 24.5 1.5 0.00018 22.0 0.1 3.2 3 0 0 3 3 3 1 GAF domain GAF_3 PF13492.1 gi|284164821|ref|YP_003403100.1| - 3.4e-05 23.9 0.1 0.00019 21.5 0.0 2.4 2 0 0 2 2 1 1 GAF domain Bro-N PF02498.12 gi|284164821|ref|YP_003403100.1| - 0.095 12.9 0.0 12 6.3 0.0 3.3 3 0 0 3 3 3 0 BRO family, N-terminal domain HxlR PF01638.12 gi|284164822|ref|YP_003403101.1| - 3.9e-20 71.2 0.0 4.8e-20 70.9 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_34 PF13601.1 gi|284164822|ref|YP_003403101.1| - 9.1e-07 28.8 0.0 1.2e-06 28.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|284164822|ref|YP_003403101.1| - 8.1e-06 26.0 0.0 1.1e-05 25.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|284164822|ref|YP_003403101.1| - 0.00021 20.8 0.0 0.00028 20.4 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|284164822|ref|YP_003403101.1| - 0.0025 17.5 0.0 0.0037 16.9 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.9 gi|284164822|ref|YP_003403101.1| - 0.0038 16.9 0.0 0.0055 16.4 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family MarR_2 PF12802.2 gi|284164822|ref|YP_003403101.1| - 0.0043 16.7 0.1 0.0065 16.1 0.1 1.2 1 0 0 1 1 1 1 MarR family Trp_repressor PF01371.14 gi|284164822|ref|YP_003403101.1| - 0.0049 16.7 0.0 0.0067 16.3 0.0 1.2 1 0 0 1 1 1 1 Trp repressor protein MarR PF01047.17 gi|284164822|ref|YP_003403101.1| - 0.0053 16.4 0.0 0.0095 15.6 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.1 gi|284164822|ref|YP_003403101.1| - 0.013 15.3 0.0 0.019 14.7 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DUF2250 PF10007.4 gi|284164822|ref|YP_003403101.1| - 0.065 13.1 0.2 10 6.0 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) TFIIE_alpha PF02002.12 gi|284164822|ref|YP_003403101.1| - 0.11 12.0 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit RNase_H PF00075.19 gi|284164824|ref|YP_003403103.1| - 1.2e-10 41.8 0.0 1.7e-10 41.3 0.0 1.3 1 0 0 1 1 1 1 RNase H RVT_3 PF13456.1 gi|284164824|ref|YP_003403103.1| - 3.1e-05 23.6 0.0 6.3e-05 22.6 0.0 1.5 2 0 0 2 2 2 1 Reverse transcriptase-like Polyketide_cyc2 PF10604.4 gi|284164825|ref|YP_003403104.1| - 7.3e-15 55.3 3.5 9.8e-15 54.9 2.4 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|284164825|ref|YP_003403104.1| - 2.4e-07 30.8 0.2 2.9e-07 30.5 0.1 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport ABC_tran PF00005.22 gi|284164826|ref|YP_003403105.1| - 2.8e-28 98.9 0.0 4.3e-28 98.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284164826|ref|YP_003403105.1| - 3.3e-14 53.5 0.2 2e-08 34.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|284164826|ref|YP_003403105.1| - 0.0019 18.6 0.0 0.012 16.0 0.0 2.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_22 PF13401.1 gi|284164826|ref|YP_003403105.1| - 0.0024 17.9 0.1 0.0078 16.3 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|284164826|ref|YP_003403105.1| - 0.0032 17.0 0.6 0.0071 15.9 0.4 1.7 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|284164826|ref|YP_003403105.1| - 0.0057 16.9 0.1 0.0096 16.2 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|284164826|ref|YP_003403105.1| - 0.017 14.8 0.1 0.067 12.9 0.1 2.0 1 0 0 1 1 1 0 Part of AAA domain SRP54 PF00448.17 gi|284164826|ref|YP_003403105.1| - 0.022 14.2 0.7 0.041 13.3 0.5 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_29 PF13555.1 gi|284164826|ref|YP_003403105.1| - 0.027 13.9 0.1 0.05 13.1 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|284164826|ref|YP_003403105.1| - 0.029 14.3 0.1 0.058 13.3 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.1 gi|284164826|ref|YP_003403105.1| - 0.029 13.7 0.8 0.086 12.2 0.6 1.8 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|284164826|ref|YP_003403105.1| - 0.03 15.1 1.9 0.13 13.1 1.2 2.3 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|284164826|ref|YP_003403105.1| - 0.048 13.6 0.4 1.2 9.1 0.1 2.5 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|284164826|ref|YP_003403105.1| - 0.06 13.0 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_15 PF13175.1 gi|284164826|ref|YP_003403105.1| - 0.18 10.8 0.0 2.8 6.8 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA PF00004.24 gi|284164826|ref|YP_003403105.1| - 0.28 11.3 1.2 1.1 9.5 0.8 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|284164826|ref|YP_003403105.1| - 0.45 9.8 1.9 0.93 8.8 0.2 2.1 1 1 1 2 2 2 0 AAA-like domain ABC2_membrane_2 PF12679.2 gi|284164827|ref|YP_003403106.1| - 6.6e-08 31.7 0.0 6.6e-08 31.7 0.0 3.4 2 1 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|284164827|ref|YP_003403106.1| - 2.1 7.6 14.1 0.094 11.9 4.6 2.4 2 1 0 2 2 2 0 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|284164828|ref|YP_003403107.1| - 6.2e-15 55.0 0.1 8.6e-15 54.5 0.0 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|284164828|ref|YP_003403107.1| - 1.7e-08 33.6 6.9 2.3e-08 33.2 4.8 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|284164828|ref|YP_003403107.1| - 6.6e-06 25.4 0.0 2.3e-05 23.6 0.0 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein Rnk_N PF14760.1 gi|284164828|ref|YP_003403107.1| - 0.13 12.3 2.8 0.23 11.5 0.0 2.4 2 0 0 2 2 2 0 Rnk N-terminus DUF3112 PF11309.3 gi|284164828|ref|YP_003403107.1| - 5.5 6.7 7.7 18 5.1 0.2 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF3112) Aldo_ket_red PF00248.16 gi|284164830|ref|YP_003403109.1| - 8.3e-75 251.2 0.0 9.3e-75 251.0 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Lipase_GDSL_2 PF13472.1 gi|284164830|ref|YP_003403109.1| - 0.011 15.8 0.0 0.6 10.2 0.0 2.5 2 1 1 3 3 3 0 GDSL-like Lipase/Acylhydrolase family PadR PF03551.9 gi|284164832|ref|YP_003403111.1| - 2e-05 24.2 0.0 3.4e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family FUR PF01475.14 gi|284164832|ref|YP_003403111.1| - 0.00042 20.2 0.0 0.00075 19.4 0.0 1.5 1 0 0 1 1 1 1 Ferric uptake regulator family TrmB PF01978.14 gi|284164832|ref|YP_003403111.1| - 0.0035 17.0 0.0 0.0077 15.9 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|284164832|ref|YP_003403111.1| - 0.0038 17.0 0.0 0.007 16.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2513 PF10711.4 gi|284164832|ref|YP_003403111.1| - 0.034 14.2 0.0 0.056 13.5 0.0 1.4 1 1 0 1 1 1 0 Hypothetical protein (DUF2513) HTH_11 PF08279.7 gi|284164832|ref|YP_003403111.1| - 0.079 12.6 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 HTH domain HxlR PF01638.12 gi|284164832|ref|YP_003403111.1| - 0.13 11.8 0.0 0.24 11.0 0.0 1.6 1 1 0 1 1 1 0 HxlR-like helix-turn-helix UreF PF01730.11 gi|284164833|ref|YP_003403112.1| - 5.1e-36 123.9 0.1 6.8e-36 123.5 0.1 1.2 1 0 0 1 1 1 1 UreF UreE_N PF02814.10 gi|284164834|ref|YP_003403113.1| - 8.1e-10 38.0 3.7 2.3e-09 36.6 1.3 2.3 2 0 0 2 2 2 1 UreE urease accessory protein, N-terminal domain UreE_C PF05194.7 gi|284164834|ref|YP_003403113.1| - 0.0021 18.1 43.1 2.5e+02 1.8 29.8 3.4 1 1 0 1 1 1 0 UreE urease accessory protein, C-terminal domain Zip PF02535.17 gi|284164834|ref|YP_003403113.1| - 0.69 8.8 13.9 0.8 8.6 9.7 1.1 1 0 0 1 1 1 0 ZIP Zinc transporter UreD PF01774.12 gi|284164835|ref|YP_003403114.1| - 2.3e-45 154.6 0.1 2.8e-45 154.3 0.0 1.1 1 0 0 1 1 1 1 UreD urease accessory protein cobW PF02492.14 gi|284164836|ref|YP_003403115.1| - 2.8e-35 121.3 0.0 3.3e-35 121.1 0.0 1.0 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ArgK PF03308.11 gi|284164836|ref|YP_003403115.1| - 3.1e-09 36.0 0.3 0.00024 19.9 0.0 2.0 2 0 0 2 2 2 2 ArgK protein MobB PF03205.9 gi|284164836|ref|YP_003403115.1| - 1.3e-05 24.9 0.0 2.9e-05 23.7 0.0 1.7 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|284164836|ref|YP_003403115.1| - 0.0056 16.6 0.0 0.0081 16.1 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.2 gi|284164836|ref|YP_003403115.1| - 0.0071 15.8 0.0 0.0086 15.5 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain NTPase_1 PF03266.10 gi|284164836|ref|YP_003403115.1| - 0.0094 15.6 0.0 0.015 14.9 0.0 1.3 1 0 0 1 1 1 1 NTPase AAA_17 PF13207.1 gi|284164836|ref|YP_003403115.1| - 0.014 16.2 0.1 0.037 14.8 0.1 2.0 1 1 0 1 1 1 0 AAA domain GTP_EFTU PF00009.22 gi|284164836|ref|YP_003403115.1| - 0.015 14.7 0.0 5.2 6.4 0.0 2.4 2 1 0 2 2 2 0 Elongation factor Tu GTP binding domain NACHT PF05729.7 gi|284164836|ref|YP_003403115.1| - 0.017 14.7 0.0 0.077 12.6 0.0 1.9 2 0 0 2 2 2 0 NACHT domain AAA_18 PF13238.1 gi|284164836|ref|YP_003403115.1| - 0.019 15.2 0.0 0.038 14.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain Amidohydro_2 PF04909.9 gi|284164836|ref|YP_003403115.1| - 0.037 13.5 0.0 0.055 13.0 0.0 1.3 1 0 0 1 1 1 0 Amidohydrolase LpxK PF02606.9 gi|284164836|ref|YP_003403115.1| - 0.043 12.7 0.0 0.077 11.9 0.0 1.3 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase AAA_19 PF13245.1 gi|284164836|ref|YP_003403115.1| - 0.054 13.2 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain NB-ARC PF00931.17 gi|284164836|ref|YP_003403115.1| - 0.078 11.8 0.0 0.096 11.5 0.0 1.1 1 0 0 1 1 1 0 NB-ARC domain SRP54 PF00448.17 gi|284164836|ref|YP_003403115.1| - 0.081 12.3 0.0 0.14 11.6 0.0 1.4 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain Arch_ATPase PF01637.13 gi|284164836|ref|YP_003403115.1| - 0.083 12.5 0.0 0.1 12.2 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase Miro PF08477.8 gi|284164836|ref|YP_003403115.1| - 0.089 13.2 0.0 0.81 10.1 0.0 2.3 3 0 0 3 3 2 0 Miro-like protein UPF0079 PF02367.12 gi|284164836|ref|YP_003403115.1| - 0.098 12.2 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_22 PF13401.1 gi|284164836|ref|YP_003403115.1| - 0.11 12.6 0.0 0.2 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.5 gi|284164836|ref|YP_003403115.1| - 0.12 11.5 0.0 0.18 10.9 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Zeta_toxin PF06414.7 gi|284164836|ref|YP_003403115.1| - 0.17 10.9 0.0 0.37 9.8 0.0 1.5 2 0 0 2 2 2 0 Zeta toxin Urease_gamma PF00547.13 gi|284164837|ref|YP_003403116.1| - 4.7e-43 145.2 0.0 5.4e-43 145.0 0.0 1.0 1 0 0 1 1 1 1 Urease, gamma subunit DUF2368 PF10166.4 gi|284164837|ref|YP_003403116.1| - 0.13 11.8 0.0 0.17 11.4 0.0 1.3 1 1 0 1 1 1 0 Uncharacterised conserved protein (DUF2368) Svf1 PF08622.5 gi|284164837|ref|YP_003403116.1| - 0.15 11.0 0.0 0.18 10.7 0.0 1.0 1 0 0 1 1 1 0 Svf1-like Amidohydro_1 PF01979.15 gi|284164838|ref|YP_003403117.1| - 8.8e-59 199.8 3.2 1.2e-58 199.4 2.2 1.1 1 0 0 1 1 1 1 Amidohydrolase family Urease_alpha PF00449.15 gi|284164838|ref|YP_003403117.1| - 4.8e-46 155.8 1.7 8.8e-46 154.9 1.2 1.4 1 0 0 1 1 1 1 Urease alpha-subunit, N-terminal domain Amidohydro_5 PF13594.1 gi|284164838|ref|YP_003403117.1| - 1.5e-07 31.1 2.8 3.8e-07 29.8 2.0 1.8 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|284164838|ref|YP_003403117.1| - 3.4e-06 26.5 3.1 3.4e-06 26.5 2.1 1.8 1 1 1 2 2 2 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|284164838|ref|YP_003403117.1| - 5.2e-05 23.4 3.9 0.0059 16.6 2.0 2.7 2 1 0 2 2 2 2 Amidohydrolase Urease_beta PF00699.15 gi|284164839|ref|YP_003403118.1| - 7.5e-44 147.6 0.0 9.3e-44 147.3 0.0 1.1 1 0 0 1 1 1 1 Urease beta subunit Peripla_BP_6 PF13458.1 gi|284164840|ref|YP_003403119.1| - 7.2e-84 282.0 0.3 9.5e-84 281.6 0.2 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.1 gi|284164840|ref|YP_003403119.1| - 1.1e-81 274.3 0.2 1.5e-81 273.9 0.1 1.0 1 0 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.23 gi|284164840|ref|YP_003403119.1| - 0.00022 20.1 0.1 0.001 17.9 0.1 1.9 1 1 0 1 1 1 1 Receptor family ligand binding region TAT_signal PF10518.4 gi|284164840|ref|YP_003403119.1| - 0.015 15.2 1.0 0.032 14.2 0.7 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_2 PF02653.11 gi|284164841|ref|YP_003403120.1| - 7e-37 126.8 43.3 9.5e-37 126.4 30.0 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component PgaD PF13994.1 gi|284164841|ref|YP_003403120.1| - 0.059 12.8 2.1 0.35 10.3 0.0 2.5 2 0 0 2 2 2 0 PgaD-like protein BPD_transp_2 PF02653.11 gi|284164842|ref|YP_003403121.1| - 3.8e-30 104.7 46.5 3.8e-30 104.7 32.2 1.7 1 1 1 2 2 2 1 Branched-chain amino acid transport system / permease component PGI PF00342.14 gi|284164842|ref|YP_003403121.1| - 0.041 12.3 0.1 0.065 11.6 0.1 1.2 1 0 0 1 1 1 0 Phosphoglucose isomerase ABC_tran PF00005.22 gi|284164843|ref|YP_003403122.1| - 3.5e-33 114.8 0.0 5.6e-33 114.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284164843|ref|YP_003403122.1| - 8.9e-10 39.0 0.1 1.7e-07 31.5 0.1 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|284164843|ref|YP_003403122.1| - 1.8e-05 24.0 0.2 0.084 12.0 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|284164843|ref|YP_003403122.1| - 0.00012 21.3 0.0 0.00016 20.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|284164843|ref|YP_003403122.1| - 0.00029 21.2 0.1 0.00051 20.4 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|284164843|ref|YP_003403122.1| - 0.00046 20.9 0.3 0.017 15.9 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|284164843|ref|YP_003403122.1| - 0.00062 19.9 0.1 0.0025 17.9 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|284164843|ref|YP_003403122.1| - 0.0011 18.4 0.0 0.0021 17.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain BCA_ABC_TP_C PF12399.3 gi|284164843|ref|YP_003403122.1| - 0.013 15.1 0.1 0.029 14.0 0.1 1.6 1 0 0 1 1 1 0 Branched-chain amino acid ATP-binding cassette transporter AAA_16 PF13191.1 gi|284164843|ref|YP_003403122.1| - 0.014 15.3 0.6 0.07 13.1 0.4 2.0 1 1 0 1 1 1 0 AAA ATPase domain AAA_15 PF13175.1 gi|284164843|ref|YP_003403122.1| - 0.014 14.4 0.0 1.4 7.9 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain MMR_HSR1 PF01926.18 gi|284164843|ref|YP_003403122.1| - 0.017 15.0 0.2 0.036 14.0 0.1 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_25 PF13481.1 gi|284164843|ref|YP_003403122.1| - 0.04 13.3 0.1 0.46 9.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|284164843|ref|YP_003403122.1| - 0.041 13.3 0.0 0.16 11.3 0.0 1.8 2 0 0 2 2 2 0 AAA-like domain DSRB PF10781.4 gi|284164843|ref|YP_003403122.1| - 0.052 13.0 0.0 0.12 11.8 0.0 1.6 1 0 0 1 1 1 0 Dextransucrase DSRB Dynamin_N PF00350.18 gi|284164843|ref|YP_003403122.1| - 0.063 13.0 0.0 0.29 10.9 0.0 1.9 2 0 0 2 2 2 0 Dynamin family RNA_helicase PF00910.17 gi|284164843|ref|YP_003403122.1| - 0.13 12.4 0.0 0.26 11.5 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_33 PF13671.1 gi|284164843|ref|YP_003403122.1| - 0.14 12.0 0.0 0.17 11.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|284164844|ref|YP_003403123.1| - 1.5e-33 115.9 0.0 2.2e-33 115.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284164844|ref|YP_003403123.1| - 1.4e-08 35.0 0.0 0.00028 20.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|284164844|ref|YP_003403123.1| - 0.00014 21.2 0.1 0.00024 20.5 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|284164844|ref|YP_003403123.1| - 0.00041 20.7 0.0 0.00058 20.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|284164844|ref|YP_003403123.1| - 0.00075 19.5 0.0 0.0014 18.6 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain NB-ARC PF00931.17 gi|284164844|ref|YP_003403123.1| - 0.0031 16.4 0.2 0.0049 15.7 0.2 1.3 1 0 0 1 1 1 1 NB-ARC domain NTPase_1 PF03266.10 gi|284164844|ref|YP_003403123.1| - 0.0034 17.1 0.4 0.01 15.5 0.1 1.9 2 0 0 2 2 2 1 NTPase MobB PF03205.9 gi|284164844|ref|YP_003403123.1| - 0.005 16.5 0.1 0.01 15.5 0.1 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Miro PF08477.8 gi|284164844|ref|YP_003403123.1| - 0.0051 17.2 0.0 0.01 16.3 0.0 1.4 1 0 0 1 1 1 1 Miro-like protein DUF258 PF03193.11 gi|284164844|ref|YP_003403123.1| - 0.0057 15.8 0.0 0.0091 15.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|284164844|ref|YP_003403123.1| - 0.0072 16.4 0.0 0.17 12.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|284164844|ref|YP_003403123.1| - 0.016 15.4 0.1 0.024 14.8 0.0 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ArgK PF03308.11 gi|284164844|ref|YP_003403123.1| - 0.016 13.9 0.1 0.026 13.3 0.1 1.3 1 0 0 1 1 1 0 ArgK protein AAA_30 PF13604.1 gi|284164844|ref|YP_003403123.1| - 0.02 14.4 0.1 0.047 13.2 0.0 1.6 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.14 gi|284164844|ref|YP_003403123.1| - 0.02 14.1 0.0 0.16 11.1 0.0 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|284164844|ref|YP_003403123.1| - 0.021 15.6 0.4 0.052 14.3 0.2 1.9 2 1 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|284164844|ref|YP_003403123.1| - 0.025 14.5 0.0 0.033 14.1 0.0 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_15 PF13175.1 gi|284164844|ref|YP_003403123.1| - 0.026 13.6 0.0 0.031 13.3 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain AAA_14 PF13173.1 gi|284164844|ref|YP_003403123.1| - 0.042 13.7 0.0 0.081 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|284164844|ref|YP_003403123.1| - 0.046 13.3 0.1 0.072 12.7 0.1 1.3 1 0 0 1 1 1 0 NACHT domain ATP-synt_ab PF00006.20 gi|284164844|ref|YP_003403123.1| - 0.057 12.9 0.0 0.058 12.8 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Arch_ATPase PF01637.13 gi|284164844|ref|YP_003403123.1| - 0.066 12.9 0.0 0.097 12.3 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase AAA_24 PF13479.1 gi|284164844|ref|YP_003403123.1| - 0.083 12.4 0.1 0.18 11.3 0.0 1.5 2 0 0 2 2 2 0 AAA domain UPF0079 PF02367.12 gi|284164844|ref|YP_003403123.1| - 0.092 12.3 0.5 0.17 11.4 0.2 1.5 2 0 0 2 2 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_25 PF13481.1 gi|284164844|ref|YP_003403123.1| - 0.093 12.1 0.0 0.15 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|284164844|ref|YP_003403123.1| - 0.13 11.1 0.0 0.16 10.8 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_18 PF13238.1 gi|284164844|ref|YP_003403123.1| - 0.15 12.3 0.5 0.29 11.4 0.4 1.6 1 1 0 1 1 1 0 AAA domain CBS PF00571.23 gi|284164845|ref|YP_003403124.1| - 9.5e-20 70.1 0.1 5.4e-10 38.9 0.0 2.4 2 0 0 2 2 2 2 CBS domain HTH_31 PF13560.1 gi|284164845|ref|YP_003403124.1| - 3e-12 46.5 1.9 5.9e-12 45.6 1.3 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|284164845|ref|YP_003403124.1| - 2.6e-11 43.2 0.1 5.3e-11 42.2 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|284164845|ref|YP_003403124.1| - 1.2e-09 38.0 0.0 2.4e-09 37.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|284164845|ref|YP_003403124.1| - 7.5e-05 22.2 0.2 0.00063 19.3 0.0 2.4 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|284164845|ref|YP_003403124.1| - 0.00019 21.1 0.1 0.0005 19.8 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|284164845|ref|YP_003403124.1| - 0.0072 16.5 0.0 0.015 15.5 0.0 1.6 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_24 PF13412.1 gi|284164845|ref|YP_003403124.1| - 0.025 13.9 0.5 0.9 8.9 0.0 2.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding DUF555 PF04475.7 gi|284164846|ref|YP_003403125.1| - 2.9e-48 162.0 0.1 3.3e-48 161.8 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF555) zinc_ribbon_2 PF13240.1 gi|284164846|ref|YP_003403125.1| - 0.11 11.9 0.2 0.18 11.3 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbon domain BTP PF05232.7 gi|284164847|ref|YP_003403126.1| - 0.0058 16.3 1.3 0.0065 16.1 0.9 1.1 1 0 0 1 1 1 1 Bacterial Transmembrane Pair family Proteasome PF00227.21 gi|284164848|ref|YP_003403127.1| - 1.4e-43 148.4 0.2 1.6e-43 148.1 0.1 1.0 1 0 0 1 1 1 1 Proteasome subunit GFO_IDH_MocA PF01408.17 gi|284164849|ref|YP_003403128.1| - 6.8e-30 104.0 1.3 2.8e-29 102.0 0.1 2.1 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|284164849|ref|YP_003403128.1| - 4.2e-09 36.1 0.1 9.8e-09 35.0 0.0 1.7 1 1 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain F420_oxidored PF03807.12 gi|284164849|ref|YP_003403128.1| - 3.6e-05 24.1 0.1 0.0001 22.6 0.1 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|284164849|ref|YP_003403128.1| - 0.00021 21.2 1.4 0.00059 19.7 0.1 2.3 2 2 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|284164849|ref|YP_003403128.1| - 0.0015 17.9 0.4 0.0032 16.8 0.0 1.7 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.14 gi|284164849|ref|YP_003403128.1| - 0.012 14.7 0.1 0.025 13.7 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|284164849|ref|YP_003403128.1| - 0.034 14.4 0.1 0.078 13.2 0.0 1.6 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_3 PF03447.11 gi|284164849|ref|YP_003403128.1| - 0.11 12.9 1.2 0.28 11.5 0.3 2.0 2 0 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain CoA_binding PF02629.14 gi|284164849|ref|YP_003403128.1| - 0.11 13.0 0.3 0.4 11.2 0.1 2.0 2 0 0 2 2 2 0 CoA binding domain ThuA PF06283.6 gi|284164850|ref|YP_003403129.1| - 6e-49 166.6 0.0 6.8e-49 166.5 0.0 1.0 1 0 0 1 1 1 1 Trehalose utilisation IF-2B PF01008.12 gi|284164851|ref|YP_003403130.1| - 3e-49 167.5 0.1 3.6e-49 167.2 0.1 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family FliX PF10768.4 gi|284164852|ref|YP_003403131.1| - 0.15 12.2 0.1 0.32 11.1 0.2 1.5 2 0 0 2 2 2 0 Class II flagellar assembly regulator DUF2296 PF10058.4 gi|284164853|ref|YP_003403132.1| - 0.18 11.5 0.5 0.4 10.4 0.1 1.7 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) Multi_Drug_Res PF00893.14 gi|284164854|ref|YP_003403133.1| - 3.7e-26 91.4 3.2 4.9e-26 91.0 2.2 1.1 1 0 0 1 1 1 1 Small Multidrug Resistance protein YibE_F PF07907.6 gi|284164854|ref|YP_003403133.1| - 0.11 11.6 4.6 0.14 11.2 3.2 1.1 1 0 0 1 1 1 0 YibE/F-like protein EamA PF00892.15 gi|284164854|ref|YP_003403133.1| - 0.38 10.8 8.2 0.49 10.4 5.7 1.4 1 1 0 1 1 1 0 EamA-like transporter family DUF3082 PF11282.3 gi|284164854|ref|YP_003403133.1| - 1 9.4 0.0 1 9.4 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF3082) Bax1-I PF01027.15 gi|284164854|ref|YP_003403133.1| - 1.1 8.8 9.4 1.2 8.7 6.5 1.0 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 EmrE PF13536.1 gi|284164854|ref|YP_003403133.1| - 2.1 8.5 10.9 4.8 7.4 7.5 1.6 1 1 0 1 1 1 0 Multidrug resistance efflux transporter ParA PF10609.4 gi|284164855|ref|YP_003403134.1| - 4.3e-34 116.2 0.2 9.1e-34 115.2 0.0 1.6 2 0 0 2 2 2 1 ParA/MinD ATPase like CbiA PF01656.18 gi|284164855|ref|YP_003403134.1| - 8.4e-19 67.7 0.1 1.2e-18 67.1 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF59 PF01883.14 gi|284164855|ref|YP_003403134.1| - 4.9e-13 48.8 0.3 1.2e-12 47.6 0.2 1.7 1 0 0 1 1 1 1 Domain of unknown function DUF59 AAA_31 PF13614.1 gi|284164855|ref|YP_003403134.1| - 2.3e-08 34.1 0.0 4.8e-07 29.8 0.0 2.1 1 1 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|284164855|ref|YP_003403134.1| - 2.4e-08 33.4 0.0 3.4e-08 32.9 0.0 1.2 1 0 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.13 gi|284164855|ref|YP_003403134.1| - 5.9e-05 22.3 0.0 0.038 13.1 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family VirC1 PF07015.6 gi|284164855|ref|YP_003403134.1| - 0.00046 19.3 0.0 0.00075 18.6 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein AAA_25 PF13481.1 gi|284164855|ref|YP_003403134.1| - 0.0013 18.1 0.0 0.002 17.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|284164855|ref|YP_003403134.1| - 0.0019 17.2 5.3 0.0024 16.9 0.9 2.1 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_17 PF13207.1 gi|284164855|ref|YP_003403134.1| - 0.085 13.6 0.0 0.17 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|284164855|ref|YP_003403134.1| - 4.2 7.1 6.2 27 4.6 0.8 2.8 2 1 0 2 2 2 0 Part of AAA domain HHH_5 PF14520.1 gi|284164857|ref|YP_003403136.1| - 3.6e-07 30.2 3.7 8.3e-07 29.0 0.4 2.8 2 0 0 2 2 2 1 Helix-hairpin-helix domain Cdd1 PF11731.3 gi|284164857|ref|YP_003403136.1| - 0.003 17.4 0.1 0.01 15.7 0.1 2.1 1 1 0 1 1 1 1 Pathogenicity locus DNA_pol_lambd_f PF10391.4 gi|284164857|ref|YP_003403136.1| - 0.0031 17.0 0.8 0.063 12.8 0.0 3.4 3 1 0 3 3 3 1 Fingers domain of DNA polymerase lambda DUF4332 PF14229.1 gi|284164857|ref|YP_003403136.1| - 0.048 13.6 1.1 0.048 13.6 0.8 4.2 3 2 1 4 4 4 0 Domain of unknown function (DUF4332) TfoX_C PF04994.8 gi|284164857|ref|YP_003403136.1| - 0.05 13.5 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 TfoX C-terminal domain DUF3437 PF11919.3 gi|284164857|ref|YP_003403136.1| - 0.074 12.7 1.8 0.26 11.0 0.1 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF3437) ApoLp-III PF07464.6 gi|284164857|ref|YP_003403136.1| - 0.13 12.2 17.2 0.12 12.3 10.3 2.1 1 1 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) TMPIT PF07851.8 gi|284164857|ref|YP_003403136.1| - 1.2 8.1 3.9 2.2 7.2 2.7 1.6 1 0 0 1 1 1 0 TMPIT-like protein 4HB_MCP_1 PF12729.2 gi|284164857|ref|YP_003403136.1| - 2.1 7.6 11.5 0.25 10.6 4.5 2.0 2 0 0 2 2 2 0 Four helix bundle sensory module for signal transduction ZYG-11_interact PF05884.7 gi|284164857|ref|YP_003403136.1| - 8.2 5.4 11.7 0.55 9.2 4.0 2.0 2 0 0 2 2 2 0 Interactor of ZYG-11 UDG PF03167.14 gi|284164858|ref|YP_003403137.1| - 1.3e-20 73.3 0.0 1.8e-20 72.9 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DUF539 PF04400.8 gi|284164858|ref|YP_003403137.1| - 0.0094 15.4 0.1 0.019 14.4 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF539) DUF1469 PF07332.6 gi|284164859|ref|YP_003403138.1| - 1.4 8.6 8.5 1.9 8.2 5.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) DUF4006 PF13179.1 gi|284164859|ref|YP_003403138.1| - 2.3 7.8 5.1 11 5.6 0.8 2.1 2 0 0 2 2 2 0 Family of unknown function (DUF4006) DUF2064 PF09837.4 gi|284164860|ref|YP_003403139.1| - 5e-05 22.8 0.1 0.0001 21.9 0.0 1.5 1 1 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2064) DUF3382 PF11862.3 gi|284164861|ref|YP_003403140.1| - 0.32 10.9 3.1 0.96 9.3 2.1 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF3382) SdpI PF13630.1 gi|284164861|ref|YP_003403140.1| - 0.5 10.1 4.0 0.69 9.6 2.8 1.1 1 0 0 1 1 1 0 SdpI/YhfL protein family DAGK_cat PF00781.19 gi|284164862|ref|YP_003403141.1| - 7.2e-21 73.9 0.6 1.3e-20 73.1 0.4 1.4 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain NAD_kinase PF01513.16 gi|284164862|ref|YP_003403141.1| - 0.0017 17.1 0.1 0.003 16.3 0.1 1.3 1 0 0 1 1 1 1 ATP-NAD kinase LytR_C PF13399.1 gi|284164862|ref|YP_003403141.1| - 0.038 14.3 0.3 15 6.0 0.0 2.6 2 0 0 2 2 2 0 LytR cell envelope-related transcriptional attenuator Form_Nir_trans PF01226.12 gi|284164863|ref|YP_003403142.1| - 3e-42 144.2 7.3 3.3e-42 144.1 5.1 1.0 1 0 0 1 1 1 1 Formate/nitrite transporter DUF202 PF02656.10 gi|284164863|ref|YP_003403142.1| - 0.078 13.2 0.5 0.078 13.2 0.4 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF202) Chordopox_L2 PF05803.7 gi|284164863|ref|YP_003403142.1| - 0.17 11.5 0.0 0.33 10.5 0.0 1.5 1 0 0 1 1 1 0 Chordopoxvirus L2 protein AA_permease_2 PF13520.1 gi|284164864|ref|YP_003403143.1| - 1.7e-34 119.0 39.1 2.2e-34 118.7 27.1 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|284164864|ref|YP_003403143.1| - 3.6e-25 88.2 38.8 4.9e-25 87.8 26.9 1.1 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.21 gi|284164864|ref|YP_003403143.1| - 8e-08 32.5 4.7 0.00024 21.3 0.3 2.5 2 0 0 2 2 2 2 Universal stress protein family AA_permease_C PF13906.1 gi|284164864|ref|YP_003403143.1| - 2.1e-07 30.6 3.1 2.1e-07 30.6 2.2 2.4 2 0 0 2 2 2 1 C-terminus of AA_permease Form_Nir_trans PF01226.12 gi|284164865|ref|YP_003403144.1| - 1.2e-49 168.4 16.6 1.4e-49 168.2 11.5 1.0 1 0 0 1 1 1 1 Formate/nitrite transporter Zip PF02535.17 gi|284164866|ref|YP_003403145.1| - 9.7e-05 21.5 5.1 0.0016 17.5 0.1 2.2 1 1 0 2 2 2 2 ZIP Zinc transporter UPF0118 PF01594.11 gi|284164867|ref|YP_003403146.1| - 9.3e-29 100.4 23.0 1.1e-28 100.1 16.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF20 DUF21 PF01595.15 gi|284164868|ref|YP_003403147.1| - 4.2e-49 166.3 6.4 5.4e-49 165.9 4.4 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF21 CorC_HlyC PF03471.12 gi|284164868|ref|YP_003403147.1| - 1.1e-21 76.3 1.5 2e-21 75.5 0.2 2.1 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.23 gi|284164868|ref|YP_003403147.1| - 1.1e-16 60.3 4.5 3.1e-08 33.2 0.3 3.1 3 0 0 3 3 3 2 CBS domain GCS2 PF04107.8 gi|284164869|ref|YP_003403148.1| - 2.8e-11 43.0 0.2 5.4e-11 42.1 0.0 1.6 2 0 0 2 2 2 1 Glutamate-cysteine ligase family 2(GCS2) HpcH_HpaI PF03328.9 gi|284164870|ref|YP_003403149.1| - 1.7e-16 59.7 0.0 1e-15 57.2 0.0 2.2 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family MaoC_dehydratas PF01575.14 gi|284164871|ref|YP_003403150.1| - 2.1e-07 30.3 0.0 1.5e-05 24.3 0.0 2.2 2 0 0 2 2 2 2 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|284164871|ref|YP_003403150.1| - 9.5e-07 28.6 0.1 0.0069 16.1 0.0 2.6 2 0 0 2 2 2 2 N-terminal half of MaoC dehydratase MAAL_C PF07476.6 gi|284164872|ref|YP_003403151.1| - 1.1e-114 381.5 0.0 1.5e-114 381.0 0.0 1.2 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus MAAL_N PF05034.8 gi|284164872|ref|YP_003403151.1| - 1.9e-67 225.9 0.7 3.4e-67 225.1 0.5 1.4 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase N-terminus MR_MLE_C PF13378.1 gi|284164872|ref|YP_003403151.1| - 1.3e-08 34.8 0.0 3e-08 33.6 0.0 1.6 1 0 0 1 1 1 1 Enolase C-terminal domain-like Met_asp_mut_E PF06368.6 gi|284164873|ref|YP_003403152.1| - 3.1e-185 615.5 0.0 3.5e-185 615.3 0.0 1.0 1 0 0 1 1 1 1 Methylaspartate mutase E chain (MutE) B12-binding PF02310.14 gi|284164874|ref|YP_003403153.1| - 1.5e-15 57.1 1.7 2.4e-15 56.4 1.1 1.5 1 1 0 1 1 1 1 B12 binding domain Glyco_transf_28 PF03033.15 gi|284164874|ref|YP_003403153.1| - 0.0022 17.7 0.4 0.048 13.4 0.3 2.0 2 0 0 2 2 2 1 Glycosyltransferase family 28 N-terminal domain Peripla_BP_6 PF13458.1 gi|284164874|ref|YP_003403153.1| - 0.0084 15.5 0.5 0.045 13.0 0.3 1.7 1 1 1 2 2 2 2 Periplasmic binding protein ADH_zinc_N PF00107.21 gi|284164874|ref|YP_003403153.1| - 0.051 13.1 0.1 0.2 11.2 0.0 1.9 1 1 1 2 2 2 0 Zinc-binding dehydrogenase CoA_transf_3 PF02515.12 gi|284164875|ref|YP_003403154.1| - 2.1e-60 203.2 0.0 2.7e-60 202.8 0.0 1.2 1 0 0 1 1 1 1 CoA-transferase family III VRR_NUC PF08774.6 gi|284164876|ref|YP_003403155.1| - 0.006 16.5 0.0 0.013 15.5 0.0 1.5 1 0 0 1 1 1 1 VRR-NUC domain RAP1 PF07218.6 gi|284164876|ref|YP_003403155.1| - 0.21 9.6 3.5 0.29 9.1 2.4 1.1 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) SSP160 PF06933.6 gi|284164876|ref|YP_003403155.1| - 9.5 4.0 13.3 13 3.6 9.2 1.1 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 GGDN PF05165.7 gi|284164878|ref|YP_003403157.1| - 4.1e-88 294.5 0.4 4.9e-88 294.3 0.2 1.0 1 0 0 1 1 1 1 GGDN family CBS PF00571.23 gi|284164879|ref|YP_003403158.1| - 3.8e-23 81.0 5.6 5.8e-11 42.0 0.4 2.2 2 0 0 2 2 2 2 CBS domain TF_Zn_Ribbon PF08271.7 gi|284164879|ref|YP_003403158.1| - 0.59 9.5 3.6 0.22 10.8 0.3 2.1 2 1 1 3 3 3 0 TFIIB zinc-binding PGK PF00162.14 gi|284164880|ref|YP_003403159.1| - 4e-111 371.2 0.0 4.5e-111 371.1 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Acetyltransf_1 PF00583.19 gi|284164881|ref|YP_003403160.1| - 1.8e-18 66.3 0.2 3e-18 65.6 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|284164881|ref|YP_003403160.1| - 1.7e-15 57.1 0.4 2e-15 56.9 0.3 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|284164881|ref|YP_003403160.1| - 1.3e-09 38.1 0.0 1.8e-09 37.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|284164881|ref|YP_003403160.1| - 1.5e-09 37.4 0.1 2.5e-09 36.7 0.1 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|284164881|ref|YP_003403160.1| - 1.5e-08 34.5 0.2 3e-08 33.5 0.1 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|284164881|ref|YP_003403160.1| - 1.6e-08 34.6 0.0 1.9e-08 34.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|284164881|ref|YP_003403160.1| - 3e-08 33.6 0.3 3.6e-08 33.4 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|284164881|ref|YP_003403160.1| - 2.5e-07 30.9 0.0 3e-07 30.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|284164881|ref|YP_003403160.1| - 0.00046 19.7 0.3 0.00084 18.9 0.2 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|284164881|ref|YP_003403160.1| - 0.00049 19.9 0.0 0.00082 19.2 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_13 PF13880.1 gi|284164881|ref|YP_003403160.1| - 0.024 14.3 0.0 0.048 13.3 0.0 1.5 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase Acetyltransf_6 PF13480.1 gi|284164881|ref|YP_003403160.1| - 0.068 13.1 6.4 0.031 14.2 1.2 2.2 1 1 1 2 2 2 0 Acetyltransferase (GNAT) domain VKG_Carbox PF05090.9 gi|284164882|ref|YP_003403161.1| - 1.3e-14 53.9 0.0 1.7e-14 53.5 0.0 1.1 1 0 0 1 1 1 1 Vitamin K-dependent gamma-carboxylase Usp PF00582.21 gi|284164883|ref|YP_003403162.1| - 5.7e-32 110.8 3.3 5.7e-32 110.8 2.3 2.1 2 1 0 2 2 2 1 Universal stress protein family PepSY PF03413.14 gi|284164883|ref|YP_003403162.1| - 0.42 11.2 2.1 1.7 9.3 0.4 2.6 2 1 0 2 2 2 0 Peptidase propeptide and YPEB domain Imm19 PF15567.1 gi|284164883|ref|YP_003403162.1| - 0.53 10.3 3.5 1.6 8.7 0.0 2.7 2 1 0 2 2 2 0 Immunity protein 19 E1_dh PF00676.15 gi|284164884|ref|YP_003403163.1| - 1e-68 231.3 0.0 1.4e-68 230.8 0.0 1.2 1 1 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.1 gi|284164884|ref|YP_003403163.1| - 2e-06 26.9 0.0 3.2e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.16 gi|284164884|ref|YP_003403163.1| - 5.4e-05 22.8 1.4 0.0022 17.6 0.2 3.1 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Transketolase_N PF00456.16 gi|284164884|ref|YP_003403163.1| - 0.0018 17.1 0.1 0.003 16.4 0.0 1.3 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain Usp PF00582.21 gi|284164884|ref|YP_003403163.1| - 0.56 10.3 3.2 1.5 8.9 2.2 1.7 1 0 0 1 1 1 0 Universal stress protein family Transket_pyr PF02779.19 gi|284164885|ref|YP_003403164.1| - 1.5e-44 151.5 0.9 2.5e-44 150.9 0.6 1.3 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.15 gi|284164885|ref|YP_003403164.1| - 9.3e-36 122.4 1.0 1.8e-35 121.5 0.7 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain Fumerase_C PF05683.7 gi|284164885|ref|YP_003403164.1| - 0.074 12.1 0.1 0.17 11.0 0.0 1.5 1 0 0 1 1 1 0 Fumarase C-terminus Biotin_lipoyl PF00364.17 gi|284164886|ref|YP_003403165.1| - 5.5e-14 51.5 0.1 8.3e-14 50.9 0.1 1.3 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.1 gi|284164886|ref|YP_003403165.1| - 0.00023 20.7 0.2 0.34 10.6 0.0 2.3 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_3 PF13437.1 gi|284164886|ref|YP_003403165.1| - 0.0093 16.3 0.0 3.5 7.9 0.0 2.1 1 1 1 2 2 2 2 HlyD family secretion protein GCV_H PF01597.14 gi|284164886|ref|YP_003403165.1| - 0.041 13.5 0.1 0.05 13.2 0.1 1.1 1 0 0 1 1 1 0 Glycine cleavage H-protein PTS_EIIA_1 PF00358.15 gi|284164886|ref|YP_003403165.1| - 0.15 11.5 0.2 0.59 9.6 0.1 1.8 1 1 0 1 1 1 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 2-oxoacid_dh PF00198.18 gi|284164887|ref|YP_003403166.1| - 3.6e-68 229.2 0.0 4.6e-68 228.9 0.0 1.0 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FPN1 PF06963.7 gi|284164888|ref|YP_003403167.1| - 0.099 10.9 4.1 0.19 10.1 2.8 1.4 1 0 0 1 1 1 0 Ferroportin1 (FPN1) DUF4013 PF13197.1 gi|284164888|ref|YP_003403167.1| - 2.4 7.4 19.8 0.022 14.0 3.9 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF4013) Yip1 PF04893.12 gi|284164888|ref|YP_003403167.1| - 3.7 7.0 21.3 1.6 8.2 5.7 2.6 2 1 0 2 2 2 0 Yip1 domain AMP-binding PF00501.23 gi|284164889|ref|YP_003403168.1| - 2.1e-100 336.0 0.0 2.5e-100 335.8 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|284164889|ref|YP_003403168.1| - 5.4e-18 65.7 0.4 1.2e-17 64.5 0.3 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ECH PF00378.15 gi|284164890|ref|YP_003403169.1| - 6.1e-50 169.6 0.0 7.3e-50 169.3 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family ECH_C PF13766.1 gi|284164890|ref|YP_003403169.1| - 0.00052 20.1 0.0 0.00098 19.2 0.0 1.5 1 0 0 1 1 1 1 2-enoyl-CoA Hydratase C-terminal region MOSC_N PF03476.11 gi|284164893|ref|YP_003403172.1| - 7.6e-09 35.3 0.0 1.9e-08 34.0 0.0 1.6 1 1 1 2 2 2 1 MOSC N-terminal beta barrel domain MOSC PF03473.12 gi|284164893|ref|YP_003403172.1| - 9.9e-05 21.8 0.0 0.00014 21.3 0.0 1.2 1 0 0 1 1 1 1 MOSC domain Baculo_PEP_C PF04513.7 gi|284164894|ref|YP_003403173.1| - 5.6e-26 91.0 48.9 2.1e-05 24.3 0.1 11.1 1 1 10 11 11 11 8 Baculovirus polyhedron envelope protein, PEP, C terminus AAA_13 PF13166.1 gi|284164894|ref|YP_003403173.1| - 4.7e-16 58.4 33.8 3.1e-06 25.9 0.6 5.2 1 1 4 5 5 5 5 AAA domain DUF1664 PF07889.7 gi|284164894|ref|YP_003403173.1| - 2.4e-15 56.4 48.7 0.00073 19.3 0.6 10.5 1 1 10 12 12 12 7 Protein of unknown function (DUF1664) Reo_sigmaC PF04582.7 gi|284164894|ref|YP_003403173.1| - 1.4e-13 50.7 65.6 2.4e-05 23.6 3.2 7.9 1 1 7 9 9 9 7 Reovirus sigma C capsid protein Apolipoprotein PF01442.13 gi|284164894|ref|YP_003403173.1| - 4.7e-13 49.1 77.5 2.4e-08 33.7 11.2 6.6 1 1 4 5 5 5 2 Apolipoprotein A1/A4/E domain NPV_P10 PF05531.7 gi|284164894|ref|YP_003403173.1| - 1.1e-11 44.8 76.6 0.0098 16.1 0.8 15.0 1 1 10 11 11 10 2 Nucleopolyhedrovirus P10 protein Spc7 PF08317.6 gi|284164894|ref|YP_003403173.1| - 1.2e-11 43.8 45.2 0.0067 15.1 5.0 6.9 2 1 4 7 7 7 6 Spc7 kinetochore protein IncA PF04156.9 gi|284164894|ref|YP_003403173.1| - 2e-11 43.8 99.6 6.2e-05 22.6 2.6 9.4 1 1 7 8 8 7 6 IncA protein DUF3584 PF12128.3 gi|284164894|ref|YP_003403173.1| - 4.1e-11 41.0 76.3 4.8e-06 24.2 12.4 3.9 1 1 2 4 4 4 4 Protein of unknown function (DUF3584) EzrA PF06160.7 gi|284164894|ref|YP_003403173.1| - 2.6e-10 39.1 52.8 0.017 13.3 3.9 7.4 1 1 4 6 6 6 4 Septation ring formation regulator, EzrA BLOC1_2 PF10046.4 gi|284164894|ref|YP_003403173.1| - 5e-10 39.4 48.8 0.23 11.6 0.0 11.3 3 2 7 10 10 10 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 Atg14 PF10186.4 gi|284164894|ref|YP_003403173.1| - 6.3e-09 35.1 17.4 0.1 11.5 0.1 6.6 2 2 4 7 7 7 4 UV radiation resistance protein and autophagy-related subunit 14 Filament PF00038.16 gi|284164894|ref|YP_003403173.1| - 9e-09 35.2 61.3 0.0012 18.4 9.8 7.6 1 1 2 5 5 5 3 Intermediate filament protein TPR_MLP1_2 PF07926.7 gi|284164894|ref|YP_003403173.1| - 9.7e-09 35.0 46.2 0.00012 21.7 0.8 7.8 3 3 3 7 7 7 3 TPR/MLP1/MLP2-like protein Spectrin PF00435.16 gi|284164894|ref|YP_003403173.1| - 2.6e-08 34.0 56.0 0.016 15.4 0.6 10.7 1 1 9 11 11 10 4 Spectrin repeat Laminin_II PF06009.7 gi|284164894|ref|YP_003403173.1| - 4.7e-08 32.8 45.3 0.1 12.3 0.3 9.6 2 2 7 11 11 11 4 Laminin Domain II GAS PF13851.1 gi|284164894|ref|YP_003403173.1| - 5.3e-08 32.3 31.4 0.042 13.0 1.8 7.3 1 1 4 6 6 6 3 Growth-arrest specific micro-tubule binding Fib_alpha PF08702.5 gi|284164894|ref|YP_003403173.1| - 2.8e-07 30.7 9.0 4.5 7.4 0.2 7.6 1 1 6 8 8 8 0 Fibrinogen alpha/beta chain family Snapin_Pallidin PF14712.1 gi|284164894|ref|YP_003403173.1| - 8e-06 26.0 16.3 0.069 13.4 0.1 8.9 7 6 2 9 9 9 1 Snapin/Pallidin TBPIP PF07106.8 gi|284164894|ref|YP_003403173.1| - 1.5e-05 24.5 38.2 0.4 10.2 0.3 9.4 1 1 10 12 12 12 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) COG2 PF06148.6 gi|284164894|ref|YP_003403173.1| - 1.6e-05 24.7 47.3 0.72 9.7 0.4 10.9 1 1 8 11 11 11 1 COG (conserved oligomeric Golgi) complex component, COG2 DUF148 PF02520.12 gi|284164894|ref|YP_003403173.1| - 2.5e-05 24.0 2.4 1.9 8.2 0.0 6.2 3 2 1 6 6 5 1 Domain of unknown function DUF148 AAA_27 PF13514.1 gi|284164894|ref|YP_003403173.1| - 3.6e-05 21.7 102.2 0.0017 16.2 34.8 3.8 1 1 2 3 3 3 2 AAA domain PilJ PF13675.1 gi|284164894|ref|YP_003403173.1| - 4e-05 23.8 67.2 0.075 13.3 2.4 10.6 1 1 6 8 8 8 2 Type IV pili methyl-accepting chemotaxis transducer N-term Prominin PF05478.6 gi|284164894|ref|YP_003403173.1| - 5.1e-05 21.0 17.5 0.0015 16.1 0.5 3.9 1 1 3 4 4 4 2 Prominin Prefoldin_2 PF01920.15 gi|284164894|ref|YP_003403173.1| - 5.4e-05 22.8 51.1 8.5 6.2 0.2 14.8 2 2 9 13 13 13 0 Prefoldin subunit DUF342 PF03961.8 gi|284164894|ref|YP_003403173.1| - 6.4e-05 21.5 13.9 0.11 10.8 1.1 6.3 1 1 5 9 9 9 1 Protein of unknown function (DUF342) DUF2730 PF10805.3 gi|284164894|ref|YP_003403173.1| - 0.00012 21.7 35.2 0.96 9.2 0.0 10.0 4 1 6 12 12 11 1 Protein of unknown function (DUF2730) ADIP PF11559.3 gi|284164894|ref|YP_003403173.1| - 0.00014 21.7 36.4 0.016 15.0 0.0 9.0 2 2 7 11 11 11 1 Afadin- and alpha -actinin-Binding YlqD PF11068.3 gi|284164894|ref|YP_003403173.1| - 0.00046 20.2 11.3 2 8.4 0.1 6.5 5 2 3 8 8 7 1 YlqD protein DUF948 PF06103.6 gi|284164894|ref|YP_003403173.1| - 0.00062 19.5 39.5 1.6 8.6 0.7 10.4 4 4 5 11 11 10 1 Bacterial protein of unknown function (DUF948) Tropomyosin PF00261.15 gi|284164894|ref|YP_003403173.1| - 0.00073 18.6 15.3 0.00073 18.6 10.6 4.8 1 1 2 4 4 4 2 Tropomyosin Nup54 PF13874.1 gi|284164894|ref|YP_003403173.1| - 0.0008 19.0 22.4 1.2 8.7 0.0 8.7 4 2 3 9 9 9 1 Nucleoporin complex subunit 54 Allexi_40kDa PF05549.6 gi|284164894|ref|YP_003403173.1| - 0.0013 18.1 24.0 3.6 6.8 0.2 7.5 1 1 10 11 11 11 0 Allexivirus 40kDa protein Fmp27_WPPW PF10359.4 gi|284164894|ref|YP_003403173.1| - 0.0014 17.1 36.1 0.32 9.3 0.1 7.8 1 1 4 7 7 7 3 RNA pol II promoter Fmp27 protein domain Tropomyosin_1 PF12718.2 gi|284164894|ref|YP_003403173.1| - 0.0019 18.0 107.2 0.004 17.0 2.5 9.4 1 1 8 9 9 8 4 Tropomyosin like IFT57 PF10498.4 gi|284164894|ref|YP_003403173.1| - 0.0021 16.8 27.4 0.42 9.3 0.1 5.7 1 1 2 4 4 4 1 Intra-flagellar transport protein 57 FlxA PF14282.1 gi|284164894|ref|YP_003403173.1| - 0.0029 17.5 5.6 20 5.1 0.0 7.1 4 2 4 9 9 7 0 FlxA-like protein Mnd1 PF03962.10 gi|284164894|ref|YP_003403173.1| - 0.0036 17.0 47.6 0.81 9.3 1.6 8.1 1 1 7 8 8 8 3 Mnd1 family CorA PF01544.13 gi|284164894|ref|YP_003403173.1| - 0.0038 16.2 3.6 0.0038 16.2 2.5 7.8 3 1 4 8 8 8 2 CorA-like Mg2+ transporter protein Rootletin PF15035.1 gi|284164894|ref|YP_003403173.1| - 0.0054 16.7 3.6 0.0054 16.7 2.5 6.4 1 1 2 4 4 3 1 Ciliary rootlet component, centrosome cohesion DivIVA PF05103.8 gi|284164894|ref|YP_003403173.1| - 0.0072 16.3 5.7 0.0072 16.3 3.9 9.1 3 3 8 11 11 10 1 DivIVA protein Mod_r PF07200.8 gi|284164894|ref|YP_003403173.1| - 0.01 15.7 39.8 0.42 10.5 0.3 8.1 1 1 6 9 9 9 0 Modifier of rudimentary (Mod(r)) protein WEMBL PF05701.6 gi|284164894|ref|YP_003403173.1| - 0.011 14.2 78.7 0.038 12.4 11.4 4.9 1 1 3 4 4 4 0 Weak chloroplast movement under blue light ApoLp-III PF07464.6 gi|284164894|ref|YP_003403173.1| - 0.016 15.2 1.2 0.016 15.2 0.8 8.0 3 1 3 7 7 7 0 Apolipophorin-III precursor (apoLp-III) SlyX PF04102.7 gi|284164894|ref|YP_003403173.1| - 0.028 14.7 0.9 0.028 14.7 0.6 13.5 4 4 11 15 15 14 0 SlyX HTH_15 PF12324.3 gi|284164894|ref|YP_003403173.1| - 0.04 13.5 0.4 0.3 10.7 0.0 2.8 2 0 0 2 2 1 0 Helix-turn-helix domain of alkylmercury lyase Occludin_ELL PF07303.8 gi|284164894|ref|YP_003403173.1| - 0.06 14.0 15.8 48 4.7 0.0 9.5 1 1 7 13 13 7 0 Occludin homology domain MbeD_MobD PF04899.7 gi|284164894|ref|YP_003403173.1| - 0.071 13.0 11.2 0.36 10.7 0.1 6.6 5 3 1 7 7 4 0 MbeD/MobD like DUF1202 PF06717.6 gi|284164894|ref|YP_003403173.1| - 0.079 12.2 1.8 20 4.3 0.0 3.9 3 2 1 4 4 3 0 Protein of unknown function (DUF1202) Fzo_mitofusin PF04799.8 gi|284164894|ref|YP_003403173.1| - 0.079 12.3 19.2 3.4 7.0 0.0 8.3 4 2 6 11 11 10 0 fzo-like conserved region FH2 PF02181.18 gi|284164894|ref|YP_003403173.1| - 0.11 11.3 28.8 0.31 9.8 0.1 7.4 1 1 6 8 8 8 0 Formin Homology 2 Domain Bacillus_HBL PF05791.6 gi|284164894|ref|YP_003403173.1| - 0.16 11.2 25.1 8.1 5.7 0.1 7.4 3 2 5 9 9 9 0 Bacillus haemolytic enterotoxin (HBL) Sec34 PF04136.10 gi|284164894|ref|YP_003403173.1| - 0.18 11.5 21.8 2.6 7.7 0.5 7.6 2 1 6 10 10 10 0 Sec34-like family MscS_porin PF12795.2 gi|284164894|ref|YP_003403173.1| - 0.21 10.8 59.6 0.3 10.3 0.6 6.8 1 1 6 7 7 7 0 Mechanosensitive ion channel porin domain RasGAP_C PF03836.10 gi|284164894|ref|YP_003403173.1| - 0.28 10.8 0.8 20 4.8 0.0 3.9 2 1 2 4 4 3 0 RasGAP C-terminus DUF972 PF06156.8 gi|284164894|ref|YP_003403173.1| - 0.38 11.1 34.0 4.7 7.6 0.3 9.1 1 1 4 8 8 8 0 Protein of unknown function (DUF972) TMPIT PF07851.8 gi|284164894|ref|YP_003403173.1| - 0.44 9.5 2.5 57 2.6 0.0 4.6 3 1 2 7 7 7 0 TMPIT-like protein Seryl_tRNA_N PF02403.17 gi|284164894|ref|YP_003403173.1| - 0.6 10.1 56.8 0.098 12.6 1.8 10.7 2 2 8 12 12 11 0 Seryl-tRNA synthetase N-terminal domain STAT_alpha PF01017.15 gi|284164894|ref|YP_003403173.1| - 0.72 9.5 5.0 18 4.9 0.0 4.8 4 2 0 5 5 4 0 STAT protein, all-alpha domain DHC_N2 PF08393.8 gi|284164894|ref|YP_003403173.1| - 0.87 8.0 1.7 19 3.6 0.3 3.5 2 2 0 2 2 2 0 Dynein heavy chain, N-terminal region 2 Spore_III_AB PF09548.5 gi|284164894|ref|YP_003403173.1| - 1.6 8.4 2.4 18 5.0 0.5 3.1 1 1 0 2 2 2 0 Stage III sporulation protein AB (spore_III_AB) DUF4201 PF13870.1 gi|284164894|ref|YP_003403173.1| - 3.7 6.9 18.3 0.26 10.6 0.5 6.0 2 1 3 7 7 7 0 Domain of unknown function (DUF4201) APG6 PF04111.7 gi|284164894|ref|YP_003403173.1| - 3.8 6.4 62.8 0.3 10.0 1.9 7.1 2 1 5 7 7 7 0 Autophagy protein Apg6 Myosin_tail_1 PF01576.14 gi|284164894|ref|YP_003403173.1| - 4 5.0 104.4 1.1 6.9 24.4 3.8 1 1 0 2 2 2 0 Myosin tail Flagellin_C PF00700.16 gi|284164894|ref|YP_003403173.1| - 4.3 7.5 15.7 4.4 7.5 0.1 7.2 6 3 4 10 10 6 0 Bacterial flagellin C-terminal helical region MCPsignal PF00015.16 gi|284164894|ref|YP_003403173.1| - 4.6 6.7 44.6 1.4 8.4 0.2 7.3 2 1 7 9 9 8 0 Methyl-accepting chemotaxis protein (MCP) signalling domain UPF0242 PF06785.6 gi|284164894|ref|YP_003403173.1| - 5.5 5.5 4.0 4.9 5.7 0.1 2.7 1 1 0 2 2 2 0 Uncharacterised protein family (UPF0242) FlaC_arch PF05377.6 gi|284164894|ref|YP_003403173.1| - 5.9 6.8 45.4 15 5.5 0.0 13.2 8 3 6 14 14 13 0 Flagella accessory protein C (FlaC) She9_MDM33 PF05546.6 gi|284164894|ref|YP_003403173.1| - 6.6 6.2 8.6 1.3 8.5 0.1 3.4 3 0 0 3 3 2 0 She9 / Mdm33 family Zn-ribbon_8 PF09723.5 gi|284164895|ref|YP_003403174.1| - 0.00091 19.1 2.9 0.0022 17.8 2.0 1.6 1 1 0 1 1 1 1 Zinc ribbon domain TFIIS_C PF01096.13 gi|284164895|ref|YP_003403174.1| - 0.0062 16.1 0.8 0.23 11.1 0.1 2.1 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) HypA PF01155.14 gi|284164895|ref|YP_003403174.1| - 0.011 15.4 0.9 0.011 15.4 0.6 1.0 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Copper-fist PF00649.13 gi|284164895|ref|YP_003403174.1| - 0.012 14.8 0.4 0.015 14.4 0.3 1.2 1 0 0 1 1 1 0 Copper fist DNA binding domain NCD3G PF07562.9 gi|284164895|ref|YP_003403174.1| - 0.012 15.2 0.4 0.014 15.1 0.3 1.1 1 0 0 1 1 1 0 Nine Cysteines Domain of family 3 GPCR zf-ribbon_3 PF13248.1 gi|284164895|ref|YP_003403174.1| - 0.024 13.8 2.5 0.081 12.1 1.7 1.8 1 1 0 1 1 1 0 zinc-ribbon domain DUF1272 PF06906.6 gi|284164895|ref|YP_003403174.1| - 0.025 14.4 0.4 0.026 14.3 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) TF_Zn_Ribbon PF08271.7 gi|284164895|ref|YP_003403174.1| - 0.028 13.7 1.1 0.069 12.4 0.7 1.7 1 1 0 1 1 1 0 TFIIB zinc-binding DUF2387 PF09526.5 gi|284164895|ref|YP_003403174.1| - 0.044 13.6 2.3 0.071 13.0 1.6 1.6 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) DUF2039 PF10217.4 gi|284164895|ref|YP_003403174.1| - 0.05 13.6 0.6 0.056 13.4 0.4 1.0 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2039) DZR PF12773.2 gi|284164895|ref|YP_003403174.1| - 0.08 12.7 1.4 0.12 12.2 1.0 1.4 1 1 0 1 1 1 0 Double zinc ribbon YhfH PF14149.1 gi|284164895|ref|YP_003403174.1| - 0.082 12.7 0.7 5.8 6.8 0.0 2.1 2 0 0 2 2 2 0 YhfH-like protein zf-AN1 PF01428.11 gi|284164895|ref|YP_003403174.1| - 0.17 11.8 1.2 1.6 8.6 1.3 1.9 1 1 1 2 2 2 0 AN1-like Zinc finger zf-IS66 PF13005.2 gi|284164895|ref|YP_003403174.1| - 0.29 11.1 3.9 0.86 9.6 0.1 2.3 2 1 1 3 3 3 0 zinc-finger binding domain of transposase IS66 OrfB_Zn_ribbon PF07282.6 gi|284164895|ref|YP_003403174.1| - 0.62 9.7 2.9 1.1 8.9 1.9 1.5 1 1 0 1 1 1 0 Putative transposase DNA-binding domain DNA_RNApol_7kD PF03604.8 gi|284164895|ref|YP_003403174.1| - 1 8.8 6.0 2.2 7.8 3.2 2.0 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit DUF2688 PF10892.3 gi|284164895|ref|YP_003403174.1| - 1.2 8.8 3.9 0.66 9.6 0.7 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2688) Zn_Tnp_IS1595 PF12760.2 gi|284164895|ref|YP_003403174.1| - 1.7 8.5 5.0 10 6.0 0.4 2.1 1 1 0 2 2 2 0 Transposase zinc-ribbon domain MFS_1 PF07690.11 gi|284164896|ref|YP_003403175.1| - 4.8e-45 153.8 82.1 4.3e-38 130.9 34.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily LacY_symp PF01306.14 gi|284164896|ref|YP_003403175.1| - 0.0015 17.1 0.2 0.0015 17.1 0.2 2.9 3 0 0 3 3 3 1 LacY proton/sugar symporter OATP PF03137.15 gi|284164896|ref|YP_003403175.1| - 0.0082 14.2 0.2 0.0082 14.2 0.1 2.3 2 1 0 2 2 2 1 Organic Anion Transporter Polypeptide (OATP) family Nuc_H_symport PF03825.11 gi|284164896|ref|YP_003403175.1| - 0.071 11.8 18.5 0.097 11.4 12.9 1.2 1 0 0 1 1 1 0 Nucleoside H+ symporter MbeD_MobD PF04899.7 gi|284164897|ref|YP_003403176.1| - 0.16 11.9 0.7 0.32 10.9 0.5 1.5 1 0 0 1 1 1 0 MbeD/MobD like DUF1819 PF08849.6 gi|284164898|ref|YP_003403177.1| - 0.021 14.2 0.0 0.031 13.7 0.0 1.2 1 0 0 1 1 1 0 Putative inner membrane protein (DUF1819) Phosphonate-bd PF12974.2 gi|284164898|ref|YP_003403177.1| - 0.039 13.3 0.0 0.048 13.0 0.0 1.1 1 0 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein SHOCT PF09851.4 gi|284164899|ref|YP_003403178.1| - 5.1e-09 35.3 0.3 8.4e-09 34.6 0.2 1.4 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.6 gi|284164899|ref|YP_003403178.1| - 0.00054 19.6 0.4 0.00054 19.6 0.3 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF1707) DUF4191 PF13829.1 gi|284164899|ref|YP_003403178.1| - 0.0035 16.4 0.0 0.0049 15.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4191) GvpG PF05120.7 gi|284164899|ref|YP_003403178.1| - 0.0071 16.1 2.9 0.01 15.6 2.0 1.3 1 0 0 1 1 1 1 Gas vesicle protein G FixQ PF05545.6 gi|284164899|ref|YP_003403178.1| - 0.0076 15.8 0.4 0.013 15.1 0.3 1.4 1 0 0 1 1 1 1 Cbb3-type cytochrome oxidase component FixQ CcmH PF03918.9 gi|284164899|ref|YP_003403178.1| - 0.051 12.5 0.0 0.083 11.8 0.0 1.3 1 0 0 1 1 1 0 Cytochrome C biogenesis protein DUF4381 PF14316.1 gi|284164899|ref|YP_003403178.1| - 0.078 13.0 0.1 0.095 12.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) UPF0542 PF15086.1 gi|284164899|ref|YP_003403178.1| - 0.1 12.3 0.0 0.25 11.0 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised protein family UPF0542 TAFH PF07531.9 gi|284164899|ref|YP_003403178.1| - 0.13 11.9 0.0 0.18 11.4 0.0 1.2 1 0 0 1 1 1 0 NHR1 homology to TAF Hydrolase_6 PF13344.1 gi|284164900|ref|YP_003403179.1| - 9.3e-22 76.8 0.0 2.8e-21 75.2 0.0 1.8 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|284164900|ref|YP_003403179.1| - 3e-20 71.6 0.1 6.5e-20 70.6 0.1 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|284164900|ref|YP_003403179.1| - 4.6e-08 33.7 0.9 9.7e-07 29.4 0.6 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|284164900|ref|YP_003403179.1| - 1.1e-05 25.6 0.2 0.00071 19.8 0.0 2.5 2 1 1 3 3 3 1 Haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.5 gi|284164900|ref|YP_003403179.1| - 0.0073 15.6 0.0 0.036 13.4 0.1 1.9 2 0 0 2 2 2 1 Mitochondrial PGP phosphatase Hydrolase_3 PF08282.7 gi|284164900|ref|YP_003403179.1| - 0.073 12.6 0.1 4.6 6.7 0.0 2.1 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase Rick_17kDa_Anti PF05433.10 gi|284164901|ref|YP_003403180.1| - 2.2e-07 30.3 12.3 2.9e-07 30.0 8.5 1.1 1 0 0 1 1 1 1 Glycine zipper 2TM domain Gly-zipper_Omp PF13488.1 gi|284164901|ref|YP_003403180.1| - 2.1e-06 27.2 11.5 2.8e-06 26.8 8.0 1.2 1 0 0 1 1 1 1 Glycine zipper Gly-zipper_YMGG PF13441.1 gi|284164901|ref|YP_003403180.1| - 8.9e-06 25.1 15.1 1.3e-05 24.6 10.4 1.2 1 0 0 1 1 1 1 YMGG-like Gly-zipper Gly-zipper_OmpA PF13436.1 gi|284164901|ref|YP_003403180.1| - 7.5e-05 22.3 5.8 8.4e-05 22.2 4.0 1.1 1 0 0 1 1 1 1 Glycine-zipper containing OmpA-like membrane domain Bacteriocin_IIc PF10439.4 gi|284164901|ref|YP_003403180.1| - 0.0036 17.3 4.2 0.0047 17.0 2.9 1.1 1 0 0 1 1 1 1 Bacteriocin class II with double-glycine leader peptide FAD_binding_5 PF00941.16 gi|284164901|ref|YP_003403180.1| - 0.023 14.1 0.3 0.023 14.1 0.2 1.1 1 0 0 1 1 1 0 FAD binding domain in molybdopterin dehydrogenase TraT PF05818.7 gi|284164901|ref|YP_003403180.1| - 0.026 13.9 1.4 0.027 13.8 1.0 1.1 1 0 0 1 1 1 0 Enterobacterial TraT complement resistance protein DUF3482 PF11981.3 gi|284164901|ref|YP_003403180.1| - 0.045 12.9 3.7 0.052 12.7 2.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3482) DUF456 PF04306.8 gi|284164901|ref|YP_003403180.1| - 0.071 13.1 0.8 0.088 12.8 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF456) DUF4514 PF14986.1 gi|284164901|ref|YP_003403180.1| - 0.1 12.4 0.5 0.1 12.4 0.3 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4514) BAR_3_WASP_bdg PF10456.4 gi|284164901|ref|YP_003403180.1| - 0.13 11.4 0.0 0.14 11.3 0.0 1.0 1 0 0 1 1 1 0 WASP-binding domain of Sorting nexin protein DUF3169 PF11368.3 gi|284164901|ref|YP_003403180.1| - 0.48 9.5 1.9 1.4 8.1 1.3 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3169) Romo1 PF10247.4 gi|284164901|ref|YP_003403180.1| - 1.8 8.7 5.9 3.2 8.0 1.3 2.0 1 1 1 2 2 2 0 Reactive mitochondrial oxygen species modulator 1 DUF1269 PF06897.7 gi|284164901|ref|YP_003403180.1| - 8.7 6.4 6.3 14 5.7 4.4 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1269) 4HBT PF03061.17 gi|284164902|ref|YP_003403181.1| - 1.3e-16 60.4 0.4 1.8e-16 60.0 0.3 1.2 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.1 gi|284164902|ref|YP_003403181.1| - 0.038 14.4 0.1 0.046 14.1 0.1 1.1 1 0 0 1 1 1 0 Thioesterase-like superfamily TraB PF01963.12 gi|284164903|ref|YP_003403182.1| - 1.7e-42 145.6 0.0 3.8e-23 82.2 0.0 2.3 2 0 0 2 2 2 2 TraB family Peptidase_M50 PF02163.17 gi|284164904|ref|YP_003403183.1| - 1e-08 34.3 21.0 1.3e-07 30.7 13.6 2.8 1 1 0 1 1 1 1 Peptidase family M50 EIID-AGA PF03613.9 gi|284164904|ref|YP_003403183.1| - 0.29 10.0 3.8 0.39 9.6 2.7 1.2 1 0 0 1 1 1 0 PTS system mannose/fructose/sorbose family IID component AIRS_C PF02769.17 gi|284164905|ref|YP_003403184.1| - 7.9e-21 74.6 0.0 1.3e-20 73.9 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|284164905|ref|YP_003403184.1| - 7e-14 51.8 0.8 2e-13 50.3 0.2 2.0 1 1 1 2 2 2 1 AIR synthase related protein, N-terminal domain DUF3659 PF12396.3 gi|284164905|ref|YP_003403184.1| - 0.065 12.9 0.3 1 9.0 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3659) Usp PF00582.21 gi|284164906|ref|YP_003403185.1| - 2.3e-16 60.2 1.1 5e-16 59.1 0.7 1.5 1 1 0 1 1 1 1 Universal stress protein family ETF PF01012.16 gi|284164906|ref|YP_003403185.1| - 4.7e-05 23.1 0.1 0.0027 17.4 0.0 2.1 2 0 0 2 2 2 2 Electron transfer flavoprotein domain CbiJ PF02571.9 gi|284164906|ref|YP_003403185.1| - 0.095 12.0 0.3 0.3 10.3 0.1 1.7 2 0 0 2 2 2 0 Precorrin-6x reductase CbiJ/CobK Ferritin PF00210.19 gi|284164908|ref|YP_003403187.1| - 8.6e-27 93.6 1.3 1e-26 93.3 0.9 1.1 1 0 0 1 1 1 1 Ferritin-like domain Osmo_CC PF08946.5 gi|284164908|ref|YP_003403187.1| - 0.3 11.1 2.5 0.41 10.7 0.2 2.3 2 0 0 2 2 2 0 Osmosensory transporter coiled coil Aldedh PF00171.17 gi|284164909|ref|YP_003403188.1| - 9.2e-142 472.6 1.4 1.1e-141 472.4 1.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF1487 PF07368.6 gi|284164909|ref|YP_003403188.1| - 0.0025 17.0 0.0 0.4 9.8 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF1487) PfkB PF00294.19 gi|284164910|ref|YP_003403189.1| - 4.6e-60 203.3 0.0 5.3e-60 203.0 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Virul_fac_BrkB PF03631.10 gi|284164911|ref|YP_003403190.1| - 7.5e-46 156.5 24.0 9.5e-46 156.2 16.6 1.1 1 0 0 1 1 1 1 Virulence factor BrkB ERM PF00769.14 gi|284164911|ref|YP_003403190.1| - 3.8e-05 23.3 12.7 5.2e-05 22.9 8.8 1.1 1 0 0 1 1 1 1 Ezrin/radixin/moesin family bZIP_Maf PF03131.12 gi|284164911|ref|YP_003403190.1| - 0.0017 18.5 9.4 0.0026 17.9 6.5 1.2 1 0 0 1 1 1 1 bZIP Maf transcription factor ADIP PF11559.3 gi|284164911|ref|YP_003403190.1| - 0.0026 17.6 7.2 0.0048 16.8 5.0 1.4 1 0 0 1 1 1 1 Afadin- and alpha -actinin-Binding IncA PF04156.9 gi|284164911|ref|YP_003403190.1| - 0.0053 16.3 11.2 0.0053 16.3 7.8 3.0 3 1 0 3 3 3 1 IncA protein APG6 PF04111.7 gi|284164911|ref|YP_003403190.1| - 0.0057 15.7 5.3 0.0089 15.1 3.7 1.2 1 0 0 1 1 1 1 Autophagy protein Apg6 FlaC_arch PF05377.6 gi|284164911|ref|YP_003403190.1| - 0.0061 16.4 7.5 0.007 16.2 2.0 2.3 2 0 0 2 2 2 1 Flagella accessory protein C (FlaC) DUF3450 PF11932.3 gi|284164911|ref|YP_003403190.1| - 0.0091 15.2 1.1 0.017 14.3 0.8 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3450) GAS PF13851.1 gi|284164911|ref|YP_003403190.1| - 0.015 14.5 4.3 0.025 13.7 3.0 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding CENP-Q PF13094.1 gi|284164911|ref|YP_003403190.1| - 0.017 15.1 9.4 0.026 14.5 6.5 1.2 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit CENP-F_leu_zip PF10473.4 gi|284164911|ref|YP_003403190.1| - 0.017 14.9 14.3 0.063 13.1 9.9 1.7 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 V_ATPase_I PF01496.14 gi|284164911|ref|YP_003403190.1| - 0.024 12.5 1.8 0.04 11.7 1.3 1.3 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family LPP PF04728.8 gi|284164911|ref|YP_003403190.1| - 0.027 14.2 0.0 0.22 11.3 0.0 2.2 2 0 0 2 2 2 0 Lipoprotein leucine-zipper bZIP_1 PF00170.16 gi|284164911|ref|YP_003403190.1| - 0.032 14.1 13.1 0.065 13.2 2.8 2.4 1 1 0 2 2 2 0 bZIP transcription factor BLOC1_2 PF10046.4 gi|284164911|ref|YP_003403190.1| - 0.043 13.9 1.6 0.074 13.1 1.1 1.3 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Spectrin PF00435.16 gi|284164911|ref|YP_003403190.1| - 0.047 13.9 8.9 0.076 13.2 6.2 1.3 1 0 0 1 1 1 0 Spectrin repeat HOOK PF05622.7 gi|284164911|ref|YP_003403190.1| - 0.077 10.7 9.5 0.1 10.4 6.6 1.0 1 0 0 1 1 1 0 HOOK protein DivIC PF04977.10 gi|284164911|ref|YP_003403190.1| - 0.12 11.8 12.8 0.042 13.3 3.5 2.7 1 1 1 2 2 2 0 Septum formation initiator Prefoldin_2 PF01920.15 gi|284164911|ref|YP_003403190.1| - 0.14 11.9 11.0 0.36 10.5 2.4 2.3 1 1 1 2 2 2 0 Prefoldin subunit Atg14 PF10186.4 gi|284164911|ref|YP_003403190.1| - 0.15 10.9 5.5 0.2 10.5 3.8 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DUF3552 PF12072.3 gi|284164911|ref|YP_003403190.1| - 0.16 11.1 8.8 0.045 12.9 4.2 1.5 2 0 0 2 2 1 0 Domain of unknown function (DUF3552) AAA_13 PF13166.1 gi|284164911|ref|YP_003403190.1| - 0.17 10.3 1.7 0.22 9.9 1.2 1.1 1 0 0 1 1 1 0 AAA domain Herpes_BLRF2 PF05812.7 gi|284164911|ref|YP_003403190.1| - 0.21 11.4 6.6 0.11 12.2 0.3 2.2 2 0 0 2 2 2 0 Herpesvirus BLRF2 protein DUF342 PF03961.8 gi|284164911|ref|YP_003403190.1| - 0.29 9.4 1.0 0.43 8.9 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Tup_N PF08581.5 gi|284164911|ref|YP_003403190.1| - 0.33 11.1 8.3 0.5 10.6 5.8 1.2 1 0 0 1 1 1 0 Tup N-terminal HALZ PF02183.13 gi|284164911|ref|YP_003403190.1| - 0.46 10.2 11.2 0.75 9.5 1.4 2.3 2 0 0 2 2 2 0 Homeobox associated leucine zipper Fmp27_WPPW PF10359.4 gi|284164911|ref|YP_003403190.1| - 0.55 8.5 4.8 0.77 8.1 3.3 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain TMF_DNA_bd PF12329.3 gi|284164911|ref|YP_003403190.1| - 0.67 9.8 10.5 1.2 8.9 7.3 1.4 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding Rab5-bind PF09311.6 gi|284164911|ref|YP_003403190.1| - 1.1 9.1 14.6 3.2 7.6 10.1 1.6 1 1 0 1 1 1 0 Rabaptin-like protein Tropomyosin_1 PF12718.2 gi|284164911|ref|YP_003403190.1| - 1.4 8.8 15.9 2.2 8.1 11.0 1.3 1 0 0 1 1 1 0 Tropomyosin like DivIVA PF05103.8 gi|284164911|ref|YP_003403190.1| - 2.1 8.3 9.5 9.6 6.2 1.8 2.3 1 1 1 2 2 2 0 DivIVA protein Fzo_mitofusin PF04799.8 gi|284164911|ref|YP_003403190.1| - 2.2 7.6 4.7 18 4.6 0.9 2.5 2 0 0 2 2 2 0 fzo-like conserved region Tetraspannin PF00335.15 gi|284164911|ref|YP_003403190.1| - 3.2 6.9 9.9 7 5.8 2.5 2.9 2 1 0 3 3 3 0 Tetraspanin family DUF904 PF06005.7 gi|284164911|ref|YP_003403190.1| - 3.2 8.1 15.5 1.3 9.3 3.2 2.3 1 1 0 2 2 2 0 Protein of unknown function (DUF904) DUF972 PF06156.8 gi|284164911|ref|YP_003403190.1| - 6.6 7.1 7.0 30 5.0 4.9 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF972) DUF3086 PF11285.3 gi|284164911|ref|YP_003403190.1| - 6.8 5.4 9.2 12 4.6 0.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3086) DUF4164 PF13747.1 gi|284164911|ref|YP_003403190.1| - 6.9 6.8 22.0 10 6.3 6.2 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4164) DUF2205 PF10224.4 gi|284164911|ref|YP_003403190.1| - 7.1 6.2 8.7 6.8 6.3 4.6 1.8 1 1 1 2 2 2 0 Predicted coiled-coil protein (DUF2205) Mnd1 PF03962.10 gi|284164911|ref|YP_003403190.1| - 8.8 5.9 10.9 15 5.2 7.3 1.4 1 1 1 2 2 2 0 Mnd1 family DUF4337 PF14235.1 gi|284164911|ref|YP_003403190.1| - 9 6.1 6.4 34 4.2 4.4 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4337) TroA PF01297.12 gi|284164913|ref|YP_003403192.1| - 1.9e-43 148.5 0.1 2e-43 148.4 0.1 1.0 1 0 0 1 1 1 1 Periplasmic solute binding protein family Zip PF02535.17 gi|284164913|ref|YP_003403192.1| - 0.048 12.6 0.8 0.064 12.2 0.5 1.2 1 0 0 1 1 1 0 ZIP Zinc transporter DDE_Tnp_IS66_C PF13817.1 gi|284164913|ref|YP_003403192.1| - 0.093 12.7 0.0 0.64 10.0 0.0 2.3 2 0 0 2 2 2 0 IS66 C-terminal element TAT_signal PF10518.4 gi|284164913|ref|YP_003403192.1| - 0.14 12.1 3.5 0.33 11.0 2.4 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence ABC_tran PF00005.22 gi|284164914|ref|YP_003403193.1| - 6.5e-31 107.4 0.0 8.8e-31 107.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284164914|ref|YP_003403193.1| - 3.4e-12 46.9 0.0 2.2e-05 24.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain SbcCD_C PF13558.1 gi|284164914|ref|YP_003403193.1| - 0.00021 21.1 0.8 0.0039 17.0 0.2 2.6 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|284164914|ref|YP_003403193.1| - 0.00035 20.0 0.1 0.00082 18.8 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|284164914|ref|YP_003403193.1| - 0.00038 19.7 0.3 0.004 16.4 0.2 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_33 PF13671.1 gi|284164914|ref|YP_003403193.1| - 0.00042 20.2 0.0 0.0073 16.1 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|284164914|ref|YP_003403193.1| - 0.00046 20.2 0.6 0.0015 18.5 0.4 1.7 1 1 0 1 1 1 1 AAA ATPase domain Peripla_BP_4 PF13407.1 gi|284164914|ref|YP_003403193.1| - 0.00073 18.9 0.1 0.0011 18.3 0.1 1.2 1 0 0 1 1 1 1 Periplasmic binding protein domain AAA_23 PF13476.1 gi|284164914|ref|YP_003403193.1| - 0.0017 18.7 0.0 0.0039 17.5 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|284164914|ref|YP_003403193.1| - 0.002 17.8 0.1 0.0088 15.7 0.0 2.0 2 0 0 2 2 2 1 Part of AAA domain T2SE PF00437.15 gi|284164914|ref|YP_003403193.1| - 0.0038 16.1 0.1 0.019 13.8 0.0 2.0 2 0 0 2 2 2 1 Type II/IV secretion system protein Mg_chelatase PF01078.16 gi|284164914|ref|YP_003403193.1| - 0.013 14.6 0.0 0.021 14.0 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_22 PF13401.1 gi|284164914|ref|YP_003403193.1| - 0.014 15.5 0.8 0.17 12.0 0.5 2.1 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|284164914|ref|YP_003403193.1| - 0.022 14.4 0.0 0.044 13.4 0.0 1.7 1 1 0 1 1 1 0 NTPase ABC_ATPase PF09818.4 gi|284164914|ref|YP_003403193.1| - 0.026 13.1 0.4 0.55 8.7 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class IstB_IS21 PF01695.12 gi|284164914|ref|YP_003403193.1| - 0.027 13.9 0.9 1.1 8.6 0.0 2.3 2 1 0 2 2 2 0 IstB-like ATP binding protein AAA_25 PF13481.1 gi|284164914|ref|YP_003403193.1| - 0.064 12.6 1.6 0.22 10.9 0.2 2.5 2 1 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|284164914|ref|YP_003403193.1| - 0.082 12.5 0.1 0.13 11.8 0.1 1.3 1 0 0 1 1 1 0 NACHT domain cobW PF02492.14 gi|284164914|ref|YP_003403193.1| - 0.11 11.9 1.6 0.16 11.4 0.3 2.0 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_17 PF13207.1 gi|284164914|ref|YP_003403193.1| - 0.11 13.2 0.1 0.77 10.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|284164914|ref|YP_003403193.1| - 0.12 12.0 0.0 0.34 10.6 0.0 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_5 PF07728.9 gi|284164914|ref|YP_003403193.1| - 0.15 11.7 0.1 0.45 10.2 0.1 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) ABC-3 PF00950.12 gi|284164915|ref|YP_003403194.1| - 2.1e-59 200.9 33.9 2.1e-59 200.9 23.5 1.3 2 0 0 2 2 2 1 ABC 3 transport family FecCD PF01032.13 gi|284164915|ref|YP_003403194.1| - 0.00021 20.2 33.7 0.00021 20.2 23.4 2.5 2 1 1 3 3 3 1 FecCD transport family HAUS6_N PF14661.1 gi|284164915|ref|YP_003403194.1| - 0.13 11.5 0.0 0.19 11.0 0.0 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus DUF2407_C PF13373.1 gi|284164915|ref|YP_003403194.1| - 0.79 9.6 2.7 0.85 9.5 0.1 2.3 2 0 0 2 2 2 0 DUF2407 C-terminal domain OATP PF03137.15 gi|284164916|ref|YP_003403195.1| - 0.097 10.7 0.1 0.097 10.7 0.1 2.2 3 0 0 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family DUF2975 PF11188.3 gi|284164916|ref|YP_003403195.1| - 3 7.5 8.5 0.23 11.1 0.3 2.2 1 1 2 3 3 3 0 Protein of unknown function (DUF2975) ABC2_membrane_3 PF12698.2 gi|284164916|ref|YP_003403195.1| - 9.1 5.2 9.2 19 4.1 6.2 1.6 1 1 0 1 1 1 0 ABC-2 family transporter protein ATP-grasp_5 PF13549.1 gi|284164917|ref|YP_003403196.1| - 3.2e-72 242.3 0.1 5.2e-72 241.6 0.1 1.3 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.1 gi|284164917|ref|YP_003403196.1| - 2.8e-52 175.9 0.7 8.6e-52 174.4 0.1 2.1 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|284164917|ref|YP_003403196.1| - 5e-25 87.9 1.3 1.1e-23 83.5 0.1 3.2 3 0 0 3 3 3 1 CoA binding domain CoA_binding PF02629.14 gi|284164917|ref|YP_003403196.1| - 5.9e-12 45.9 0.1 2.7e-11 43.8 0.0 2.2 1 0 0 1 1 1 1 CoA binding domain ATP-grasp_2 PF08442.5 gi|284164917|ref|YP_003403196.1| - 3.3e-05 23.3 0.0 0.00013 21.4 0.0 2.0 2 1 0 2 2 2 1 ATP-grasp domain AAA_26 PF13500.1 gi|284164918|ref|YP_003403197.1| - 3.1e-33 115.0 0.0 4.6e-33 114.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain DRTGG PF07085.7 gi|284164918|ref|YP_003403197.1| - 1.2e-28 98.7 0.2 7.2e-28 96.2 0.0 2.3 2 1 0 2 2 2 1 DRTGG domain CbiA PF01656.18 gi|284164918|ref|YP_003403197.1| - 0.0013 18.2 0.3 0.0034 16.7 0.2 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain IF2_N PF04760.10 gi|284164918|ref|YP_003403197.1| - 0.13 11.9 0.0 6.2 6.5 0.0 3.5 4 0 0 4 4 4 0 Translation initiation factor IF-2, N-terminal region PRC PF05239.11 gi|284164920|ref|YP_003403199.1| - 4.4e-12 45.7 0.9 5.6e-12 45.3 0.6 1.1 1 0 0 1 1 1 1 PRC-barrel domain DUF3315 PF11776.3 gi|284164920|ref|YP_003403199.1| - 0.12 11.8 0.3 0.2 11.2 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3315) TrkA_N PF02254.13 gi|284164921|ref|YP_003403200.1| - 1.3e-19 70.3 2.3 1.7e-19 69.8 0.8 1.9 2 0 0 2 2 1 1 TrkA-N domain DHH PF01368.15 gi|284164921|ref|YP_003403200.1| - 3.6e-17 62.3 0.4 3.4e-16 59.1 0.2 2.2 2 0 0 2 2 2 1 DHH family F420_oxidored PF03807.12 gi|284164921|ref|YP_003403200.1| - 2.6e-08 34.1 0.2 1.2e-07 32.0 0.1 2.2 2 0 0 2 2 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.1 gi|284164921|ref|YP_003403200.1| - 4.7e-08 33.2 3.9 7.2e-08 32.6 1.6 2.1 2 1 0 2 2 2 1 NADH(P)-binding ApbA PF02558.11 gi|284164921|ref|YP_003403200.1| - 3.2e-07 29.9 0.0 9.2e-07 28.4 0.0 1.9 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA Saccharop_dh PF03435.13 gi|284164921|ref|YP_003403200.1| - 3.7e-07 29.4 0.3 1.6e-06 27.3 0.2 2.0 2 0 0 2 2 2 1 Saccharopine dehydrogenase NAD_binding_7 PF13241.1 gi|284164921|ref|YP_003403200.1| - 1.9e-05 24.8 0.3 6.3e-05 23.1 0.2 1.9 1 0 0 1 1 1 1 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|284164921|ref|YP_003403200.1| - 4.6e-05 22.8 0.0 0.00013 21.3 0.0 1.8 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_2 PF03446.10 gi|284164921|ref|YP_003403200.1| - 5.6e-05 23.0 0.0 0.00011 22.0 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.15 gi|284164921|ref|YP_003403200.1| - 5.8e-05 23.2 0.0 0.00017 21.7 0.0 1.8 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|284164921|ref|YP_003403200.1| - 0.00011 21.9 0.0 0.00027 20.7 0.0 1.7 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus IlvN PF07991.7 gi|284164921|ref|YP_003403200.1| - 0.00031 20.1 0.1 0.00059 19.2 0.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain FAD_binding_3 PF01494.14 gi|284164921|ref|YP_003403200.1| - 0.00056 19.0 0.0 0.00099 18.2 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain 3HCDH_N PF02737.13 gi|284164921|ref|YP_003403200.1| - 0.0015 18.2 0.1 0.0037 16.9 0.0 1.7 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DAO PF01266.19 gi|284164921|ref|YP_003403200.1| - 0.0015 17.4 0.6 0.006 15.5 0.0 2.1 3 0 0 3 3 3 1 FAD dependent oxidoreductase 2-Hacid_dh_C PF02826.14 gi|284164921|ref|YP_003403200.1| - 0.0031 16.6 0.0 0.0079 15.3 0.0 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ThiF PF00899.16 gi|284164921|ref|YP_003403200.1| - 0.0053 16.5 0.5 0.02 14.7 0.4 2.0 1 1 0 1 1 1 1 ThiF family ADH_zinc_N PF00107.21 gi|284164921|ref|YP_003403200.1| - 0.006 16.1 0.2 0.16 11.4 0.0 3.0 4 0 0 4 4 4 1 Zinc-binding dehydrogenase XdhC_C PF13478.1 gi|284164921|ref|YP_003403200.1| - 0.0086 16.3 1.1 0.068 13.4 0.1 2.6 2 1 0 3 3 2 1 XdhC Rossmann domain DHHA1 PF02272.14 gi|284164921|ref|YP_003403200.1| - 0.016 14.9 0.0 0.04 13.6 0.0 1.8 1 0 0 1 1 1 0 DHHA1 domain Pyr_redox_2 PF07992.9 gi|284164921|ref|YP_003403200.1| - 0.018 14.9 0.0 0.034 14.0 0.0 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|284164921|ref|YP_003403200.1| - 0.063 13.3 0.1 0.15 12.0 0.0 1.6 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Epimerase PF01370.16 gi|284164921|ref|YP_003403200.1| - 0.068 12.5 0.2 0.16 11.3 0.1 1.6 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family adh_short PF00106.20 gi|284164921|ref|YP_003403200.1| - 0.094 12.6 9.2 0.054 13.4 1.8 3.1 2 1 0 3 3 3 0 short chain dehydrogenase DUF364 PF04016.7 gi|284164921|ref|YP_003403200.1| - 0.099 11.9 0.1 0.52 9.6 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF364) UPF0146 PF03686.8 gi|284164921|ref|YP_003403200.1| - 0.41 10.4 2.1 4 7.2 1.5 2.4 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0146) KR PF08659.5 gi|284164921|ref|YP_003403200.1| - 1.3 8.6 4.9 1.4 8.5 0.7 2.7 2 1 2 4 4 3 0 KR domain ABC_tran PF00005.22 gi|284164922|ref|YP_003403201.1| - 3.2e-25 89.0 0.0 5.2e-25 88.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284164922|ref|YP_003403201.1| - 6.9e-15 55.7 0.0 1.2e-10 41.8 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|284164922|ref|YP_003403201.1| - 0.0024 17.3 0.0 0.14 11.5 0.0 2.3 2 0 0 2 2 2 1 AAA-like domain AAA_16 PF13191.1 gi|284164922|ref|YP_003403201.1| - 0.0038 17.2 0.1 0.0096 15.9 0.0 1.7 1 1 1 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|284164922|ref|YP_003403201.1| - 0.0071 15.8 0.0 0.014 14.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|284164922|ref|YP_003403201.1| - 0.015 14.4 0.0 0.023 13.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SbcCD_C PF13558.1 gi|284164922|ref|YP_003403201.1| - 0.019 14.8 0.1 0.077 12.9 0.0 2.2 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.1 gi|284164922|ref|YP_003403201.1| - 0.028 14.0 0.0 0.11 12.0 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|284164922|ref|YP_003403201.1| - 0.032 14.5 0.1 0.052 13.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|284164922|ref|YP_003403201.1| - 0.035 14.0 0.0 0.096 12.6 0.0 1.8 2 0 0 2 2 2 0 50S ribosome-binding GTPase SMC_N PF02463.14 gi|284164922|ref|YP_003403201.1| - 0.036 13.2 0.0 4.9 6.3 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|284164922|ref|YP_003403201.1| - 0.051 13.7 0.0 0.32 11.1 0.0 2.1 1 1 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|284164922|ref|YP_003403201.1| - 0.063 12.0 0.0 0.12 11.1 0.0 1.4 1 0 0 1 1 1 0 ArgK protein AAA_25 PF13481.1 gi|284164922|ref|YP_003403201.1| - 0.088 12.1 1.5 0.31 10.4 0.2 2.4 1 1 1 2 2 2 0 AAA domain ABC2_membrane_2 PF12679.2 gi|284164923|ref|YP_003403202.1| - 9.7e-43 146.0 10.3 1.1e-42 145.8 7.2 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|284164923|ref|YP_003403202.1| - 1.7e-17 63.3 9.9 1.7e-17 63.3 6.8 1.5 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|284164923|ref|YP_003403202.1| - 1.2e-06 27.8 13.2 1.2e-06 27.8 9.1 1.6 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|284164923|ref|YP_003403202.1| - 4.9e-06 25.9 8.2 1e-05 24.9 3.9 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein Beta_helix PF13229.1 gi|284164924|ref|YP_003403203.1| - 3.3e-08 33.4 7.1 8.3e-05 22.3 2.4 3.4 1 1 1 2 2 2 2 Right handed beta helix region Pectate_lyase_3 PF12708.2 gi|284164924|ref|YP_003403203.1| - 4.2e-07 30.3 0.2 0.0045 17.1 0.0 2.4 1 1 1 2 2 2 2 Pectate lyase superfamily protein Lactamase_B_3 PF13483.1 gi|284164925|ref|YP_003403204.1| - 1.4e-26 93.1 0.5 1.8e-26 92.8 0.3 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|284164925|ref|YP_003403204.1| - 1e-05 25.2 0.4 1.7e-05 24.4 0.3 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain CbiA PF01656.18 gi|284164926|ref|YP_003403205.1| - 9.5e-16 57.7 0.1 1.5e-15 57.1 0.1 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.4 gi|284164926|ref|YP_003403205.1| - 3e-15 55.8 0.0 4.9e-15 55.1 0.0 1.3 1 0 0 1 1 1 1 ParA/MinD ATPase like AAA_31 PF13614.1 gi|284164926|ref|YP_003403205.1| - 1.1e-07 31.9 0.1 5.4e-07 29.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.10 gi|284164926|ref|YP_003403205.1| - 0.00021 20.4 0.4 0.00033 19.7 0.3 1.2 1 0 0 1 1 1 1 Anion-transporting ATPase VirC1 PF07015.6 gi|284164926|ref|YP_003403205.1| - 0.00047 19.3 0.1 0.00091 18.3 0.1 1.4 1 0 0 1 1 1 1 VirC1 protein MipZ PF09140.6 gi|284164926|ref|YP_003403205.1| - 0.0015 17.7 0.1 0.0023 17.0 0.1 1.2 1 0 0 1 1 1 1 ATPase MipZ YhjQ PF06564.7 gi|284164926|ref|YP_003403205.1| - 0.0044 16.4 0.3 0.0081 15.5 0.1 1.4 2 0 0 2 2 2 1 YhjQ protein AAA_26 PF13500.1 gi|284164926|ref|YP_003403205.1| - 0.0047 16.5 0.0 0.088 12.3 0.1 2.1 2 0 0 2 2 2 1 AAA domain LpxK PF02606.9 gi|284164926|ref|YP_003403205.1| - 0.012 14.5 0.2 0.019 13.9 0.2 1.2 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase Hint_2 PF13403.1 gi|284164926|ref|YP_003403205.1| - 0.014 15.3 0.1 0.028 14.3 0.1 1.4 1 0 0 1 1 1 0 Hint domain SRP54 PF00448.17 gi|284164926|ref|YP_003403205.1| - 0.021 14.2 0.0 0.041 13.3 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_17 PF13207.1 gi|284164926|ref|YP_003403205.1| - 0.064 14.0 0.0 0.22 12.3 0.0 2.0 2 0 0 2 2 1 0 AAA domain AAA_25 PF13481.1 gi|284164926|ref|YP_003403205.1| - 0.066 12.6 0.1 0.17 11.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain Glyco_trans_4_4 PF13579.1 gi|284164926|ref|YP_003403205.1| - 0.069 13.2 1.3 0.1 12.7 0.1 2.1 2 0 0 2 2 1 0 Glycosyl transferase 4-like domain Molybdopterin PF00384.17 gi|284164928|ref|YP_003403207.1| - 9e-36 123.5 0.1 2.6e-31 108.8 0.0 2.3 2 0 0 2 2 2 2 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|284164928|ref|YP_003403207.1| - 2.1e-05 24.2 0.4 0.00016 21.4 0.0 2.6 3 0 0 3 3 3 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|284164928|ref|YP_003403207.1| - 0.25 11.1 0.0 0.73 9.6 0.0 1.8 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain Fer4_11 PF13247.1 gi|284164929|ref|YP_003403208.1| - 2e-29 101.3 8.1 2e-29 101.3 5.6 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|284164929|ref|YP_003403208.1| - 9.2e-08 32.3 18.2 3.1e-05 24.2 4.7 3.5 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|284164929|ref|YP_003403208.1| - 7.3e-06 25.5 18.3 0.0008 19.1 1.0 4.7 4 0 0 4 4 4 1 4Fe-4S binding domain Fer4_10 PF13237.1 gi|284164929|ref|YP_003403208.1| - 2.3e-05 24.1 21.9 0.0039 16.9 4.5 3.3 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|284164929|ref|YP_003403208.1| - 9.1e-05 22.6 18.4 0.13 12.5 0.2 3.5 2 1 2 4 4 4 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|284164929|ref|YP_003403208.1| - 0.00032 20.1 17.8 0.032 13.8 0.6 4.8 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|284164929|ref|YP_003403208.1| - 0.00041 20.3 13.4 0.15 12.1 0.0 3.2 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|284164929|ref|YP_003403208.1| - 0.00091 19.0 19.4 0.023 14.5 0.5 3.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|284164929|ref|YP_003403208.1| - 0.039 13.8 28.4 1 9.3 1.9 4.9 4 2 0 4 4 4 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|284164929|ref|YP_003403208.1| - 0.043 14.2 11.5 0.14 12.5 0.2 3.7 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|284164929|ref|YP_003403208.1| - 0.15 12.3 17.8 0.23 11.8 0.1 3.8 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|284164929|ref|YP_003403208.1| - 2 9.2 17.4 6.5 7.5 0.4 4.2 3 1 0 3 3 3 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|284164929|ref|YP_003403208.1| - 2.4 8.7 24.2 2.5 8.6 1.5 4.5 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|284164929|ref|YP_003403208.1| - 2.4 8.7 21.2 3.1 8.4 2.0 4.7 4 1 0 4 4 4 0 4Fe-4S single cluster domain Nitrate_red_del PF02613.10 gi|284164930|ref|YP_003403209.1| - 4.1e-16 59.0 0.9 6.3e-16 58.4 0.6 1.3 1 0 0 1 1 1 1 Nitrate reductase delta subunit MobB PF03205.9 gi|284164931|ref|YP_003403210.1| - 1.7e-18 66.7 0.1 3.1e-17 62.5 0.1 2.0 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|284164931|ref|YP_003403210.1| - 9.5e-06 25.7 0.1 4.1e-05 23.6 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain Asp_Glu_race PF01177.17 gi|284164931|ref|YP_003403210.1| - 0.0017 18.2 0.0 0.002 18.0 0.0 1.3 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase PduV-EutP PF10662.4 gi|284164931|ref|YP_003403210.1| - 0.002 17.6 0.0 0.0027 17.2 0.0 1.2 1 0 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation AAA_33 PF13671.1 gi|284164931|ref|YP_003403210.1| - 0.0025 17.6 0.0 0.0045 16.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.18 gi|284164931|ref|YP_003403210.1| - 0.0031 17.4 0.0 0.0046 16.8 0.0 1.5 1 1 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|284164931|ref|YP_003403210.1| - 0.0033 16.9 0.0 0.0063 15.9 0.0 1.5 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain AAA_17 PF13207.1 gi|284164931|ref|YP_003403210.1| - 0.0049 17.6 0.0 0.011 16.5 0.0 1.7 1 1 0 1 1 1 1 AAA domain SRPRB PF09439.5 gi|284164931|ref|YP_003403210.1| - 0.0065 15.7 0.0 0.0096 15.1 0.0 1.2 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit DUF258 PF03193.11 gi|284164931|ref|YP_003403210.1| - 0.0088 15.2 0.0 0.055 12.6 0.0 2.0 1 1 0 1 1 1 1 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|284164931|ref|YP_003403210.1| - 0.02 14.2 0.1 0.05 13.0 0.0 1.8 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|284164931|ref|YP_003403210.1| - 0.021 14.4 0.0 0.037 13.6 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_18 PF13238.1 gi|284164931|ref|YP_003403210.1| - 0.025 14.8 0.0 0.062 13.6 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|284164931|ref|YP_003403210.1| - 0.035 13.6 0.0 0.075 12.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|284164931|ref|YP_003403210.1| - 0.035 14.2 0.0 0.042 13.9 0.0 1.4 1 1 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|284164931|ref|YP_003403210.1| - 0.041 13.5 0.0 0.059 13.0 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_28 PF13521.1 gi|284164931|ref|YP_003403210.1| - 0.047 13.6 0.1 0.11 12.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|284164931|ref|YP_003403210.1| - 0.049 13.3 0.0 0.081 12.6 0.0 1.3 1 0 0 1 1 1 0 NTPase PRK PF00485.13 gi|284164931|ref|YP_003403210.1| - 0.057 12.9 0.0 0.084 12.4 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family RNA_helicase PF00910.17 gi|284164931|ref|YP_003403210.1| - 0.061 13.4 0.0 0.083 13.0 0.0 1.2 1 0 0 1 1 1 0 RNA helicase cobW PF02492.14 gi|284164931|ref|YP_003403210.1| - 0.062 12.7 0.0 0.091 12.2 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_5 PF07728.9 gi|284164931|ref|YP_003403210.1| - 0.064 12.9 0.0 0.12 12.0 0.0 1.4 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) T2SE PF00437.15 gi|284164931|ref|YP_003403210.1| - 0.081 11.8 0.0 0.11 11.4 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_14 PF13173.1 gi|284164931|ref|YP_003403210.1| - 0.09 12.6 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|284164931|ref|YP_003403210.1| - 0.11 12.2 0.0 0.12 12.0 0.0 1.3 1 1 0 1 1 1 0 Archaeal ATPase SBP_bac_11 PF13531.1 gi|284164932|ref|YP_003403211.1| - 6e-29 101.3 0.0 8e-29 100.8 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|284164932|ref|YP_003403211.1| - 2e-05 24.4 0.0 4.3e-05 23.4 0.0 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.17 gi|284164933|ref|YP_003403212.1| - 6e-17 61.7 12.0 6e-17 61.7 8.3 1.8 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component HTH_10 PF04967.7 gi|284164934|ref|YP_003403213.1| - 8.8e-19 66.8 0.1 1.6e-18 66.0 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.1 gi|284164934|ref|YP_003403213.1| - 9.9e-05 21.6 0.1 0.00024 20.4 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|284164934|ref|YP_003403213.1| - 0.00029 20.4 0.1 0.00088 18.8 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_AsnC-type PF13404.1 gi|284164934|ref|YP_003403213.1| - 0.0024 17.3 0.1 0.0061 16.0 0.1 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain UPF0122 PF04297.9 gi|284164934|ref|YP_003403213.1| - 0.024 14.6 0.0 0.042 13.8 0.0 1.4 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_28 PF13518.1 gi|284164934|ref|YP_003403213.1| - 0.026 14.5 0.0 0.19 11.7 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|284164934|ref|YP_003403213.1| - 0.033 13.4 0.2 0.066 12.5 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_11 PF08279.7 gi|284164934|ref|YP_003403213.1| - 0.054 13.1 0.1 0.35 10.5 0.0 2.2 2 0 0 2 2 2 0 HTH domain HTH_AraC PF00165.18 gi|284164934|ref|YP_003403213.1| - 0.06 13.2 0.0 14 5.6 0.0 3.0 3 0 0 3 3 3 0 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_3 PF01381.17 gi|284164934|ref|YP_003403213.1| - 0.072 12.9 0.1 0.36 10.7 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix GntR PF00392.16 gi|284164934|ref|YP_003403213.1| - 0.11 11.9 0.3 0.22 10.9 0.2 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family FbpA PF05833.6 gi|284164934|ref|YP_003403213.1| - 0.13 10.7 0.0 0.18 10.3 0.0 1.1 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) Fer4_5 PF12801.2 gi|284164935|ref|YP_003403214.1| - 1e-09 37.9 12.9 1.2e-05 25.0 0.1 3.8 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|284164935|ref|YP_003403214.1| - 0.89 9.6 5.6 0.32 11.0 1.9 1.7 2 0 0 2 2 2 0 4Fe-4S dicluster domain ECH PF00378.15 gi|284164936|ref|YP_003403215.1| - 4.5e-50 170.0 0.1 5.1e-50 169.8 0.1 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family PyrI PF01948.13 gi|284164942|ref|YP_003403221.1| - 9.3e-37 124.9 0.2 1.2e-36 124.6 0.1 1.1 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.10 gi|284164942|ref|YP_003403221.1| - 8.5e-16 57.1 0.1 1.5e-15 56.3 0.1 1.4 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain OTCace_N PF02729.16 gi|284164943|ref|YP_003403222.1| - 2.9e-43 146.9 0.0 1.4e-42 144.6 0.0 1.9 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|284164943|ref|YP_003403222.1| - 2.5e-37 128.2 0.0 3.6e-37 127.6 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KaiC PF06745.8 gi|284164944|ref|YP_003403223.1| - 7e-08 31.8 0.0 1.2e-05 24.5 0.0 2.2 1 1 1 2 2 2 2 KaiC AAA_25 PF13481.1 gi|284164944|ref|YP_003403223.1| - 0.051 12.9 0.2 4.3 6.7 0.0 2.3 2 1 0 2 2 2 0 AAA domain FKBP_C PF00254.23 gi|284164946|ref|YP_003403225.1| - 8e-09 35.4 0.6 1.9e-08 34.2 0.4 1.7 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase ScdA_N PF04405.9 gi|284164946|ref|YP_003403225.1| - 0.028 13.7 0.2 0.067 12.5 0.2 1.7 1 0 0 1 1 1 0 Domain of Unknown function (DUF542) CYTH PF01928.16 gi|284164947|ref|YP_003403226.1| - 1.7e-44 151.7 5.2 1.9e-44 151.5 3.6 1.0 1 0 0 1 1 1 1 CYTH domain AdoMet_Synthase PF01941.14 gi|284164948|ref|YP_003403227.1| - 3e-175 582.4 7.1 3.4e-175 582.2 4.9 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) S-AdoMet_synt_N PF00438.15 gi|284164948|ref|YP_003403227.1| - 0.036 14.3 0.3 0.2 11.9 0.0 2.4 2 0 0 2 2 2 0 S-adenosylmethionine synthetase, N-terminal domain MFS_1 PF07690.11 gi|284164949|ref|YP_003403228.1| - 1.5e-59 201.5 72.3 1.7e-44 151.9 31.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|284164949|ref|YP_003403228.1| - 5e-07 28.4 22.5 1e-06 27.4 15.6 1.6 1 1 0 1 1 1 1 MFS/sugar transport protein OATP PF03137.15 gi|284164949|ref|YP_003403228.1| - 0.0065 14.5 0.7 0.014 13.4 0.5 1.5 1 0 0 1 1 1 1 Organic Anion Transporter Polypeptide (OATP) family MFS_1_like PF12832.2 gi|284164949|ref|YP_003403228.1| - 0.027 14.2 0.1 0.027 14.2 0.1 3.6 5 0 0 5 5 5 0 MFS_1 like family ThiI PF02568.9 gi|284164950|ref|YP_003403229.1| - 1.3e-40 138.9 0.0 2e-40 138.3 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.12 gi|284164950|ref|YP_003403229.1| - 8e-18 64.7 0.0 1.5e-17 63.7 0.0 1.5 1 0 0 1 1 1 1 THUMP domain QueC PF06508.8 gi|284164950|ref|YP_003403229.1| - 0.00015 21.1 0.0 0.37 10.0 0.0 2.5 2 1 0 2 2 2 2 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.15 gi|284164950|ref|YP_003403229.1| - 0.045 13.2 0.4 0.71 9.3 0.1 2.9 3 1 0 3 3 3 0 PP-loop family PALP PF00291.20 gi|284164953|ref|YP_003403232.1| - 1.1e-56 192.3 0.1 1.4e-56 191.9 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ADH_zinc_N PF00107.21 gi|284164953|ref|YP_003403232.1| - 0.073 12.6 0.7 0.17 11.4 0.2 2.0 2 1 0 2 2 2 0 Zinc-binding dehydrogenase Thioredoxin PF00085.15 gi|284164954|ref|YP_003403233.1| - 8.8e-08 31.7 0.0 1.1e-07 31.5 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_9 PF14595.1 gi|284164954|ref|YP_003403233.1| - 4.3e-05 23.0 0.0 7.4e-05 22.3 0.0 1.4 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.1 gi|284164954|ref|YP_003403233.1| - 0.0001 22.3 0.0 0.019 15.0 0.0 2.2 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|284164954|ref|YP_003403233.1| - 0.0001 22.4 0.1 0.003 17.7 0.0 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_7 PF13899.1 gi|284164954|ref|YP_003403233.1| - 0.00024 21.0 0.0 0.00034 20.5 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like Redoxin PF08534.5 gi|284164954|ref|YP_003403233.1| - 0.0043 16.5 0.0 0.55 9.7 0.0 2.1 1 1 1 2 2 2 2 Redoxin Thioredoxin_3 PF13192.1 gi|284164954|ref|YP_003403233.1| - 0.02 14.6 0.0 0.034 13.9 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin domain AhpC-TSA PF00578.16 gi|284164954|ref|YP_003403233.1| - 0.064 12.9 0.1 0.3 10.7 0.0 1.8 1 1 0 1 1 1 0 AhpC/TSA family Metallophos_2 PF12850.2 gi|284164955|ref|YP_003403234.1| - 3.3e-13 49.7 0.0 4.8e-06 26.4 0.0 2.1 2 0 0 2 2 2 2 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|284164955|ref|YP_003403234.1| - 0.00066 19.1 3.0 0.042 13.2 2.1 2.5 2 1 0 2 2 2 2 Calcineurin-like phosphoesterase Thioredox_DsbH PF03190.10 gi|284164956|ref|YP_003403235.1| - 4.4e-74 247.6 0.1 7.6e-74 246.8 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.1 gi|284164956|ref|YP_003403235.1| - 2.6e-12 46.5 0.0 6.7e-12 45.2 0.0 1.7 1 0 0 1 1 1 1 Thioredoxin-like GlcNAc_2-epim PF07221.6 gi|284164956|ref|YP_003403235.1| - 9.1e-09 34.7 0.3 0.00036 19.6 0.0 2.7 2 0 0 2 2 2 2 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) C5-epim_C PF06662.8 gi|284164956|ref|YP_003403235.1| - 0.00083 18.7 0.0 0.26 10.5 0.0 2.7 2 1 0 3 3 3 2 D-glucuronyl C5-epimerase C-terminus Glyco_hydro_76 PF03663.9 gi|284164956|ref|YP_003403235.1| - 0.0017 17.8 0.0 0.1 11.9 0.0 2.5 2 1 0 2 2 2 1 Glycosyl hydrolase family 76 Thioredoxin_2 PF13098.1 gi|284164956|ref|YP_003403235.1| - 0.0018 18.4 0.0 0.0082 16.3 0.0 2.1 2 0 0 2 2 2 1 Thioredoxin-like domain Glyco_hydro_88 PF07470.8 gi|284164956|ref|YP_003403235.1| - 0.0094 15.0 0.0 0.23 10.4 0.0 3.0 3 1 0 4 4 4 1 Glycosyl Hydrolase Family 88 LANC_like PF05147.8 gi|284164956|ref|YP_003403235.1| - 0.29 9.6 0.0 32 2.9 0.0 3.4 5 0 0 5 5 5 0 Lanthionine synthetase C-like protein CHRD PF07452.7 gi|284164957|ref|YP_003403236.1| - 1.4e-14 54.7 0.1 3e-14 53.6 0.1 1.5 1 0 0 1 1 1 1 CHRD domain LmjF365940-deam PF14421.1 gi|284164957|ref|YP_003403236.1| - 0.056 12.8 0.1 0.056 12.8 0.1 1.3 1 1 0 1 1 1 0 A distinct subfamily of CDD/CDA-like deaminases TAT_signal PF10518.4 gi|284164957|ref|YP_003403236.1| - 0.26 11.3 4.6 0.54 10.4 3.2 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Aconitase PF00330.15 gi|284164958|ref|YP_003403237.1| - 1.5e-131 439.1 0.0 4.2e-91 305.7 0.0 2.1 2 0 0 2 2 2 2 Aconitase family (aconitate hydratase) Aconitase_C PF00694.14 gi|284164958|ref|YP_003403237.1| - 3.6e-40 137.0 0.0 6.1e-40 136.3 0.0 1.4 1 0 0 1 1 1 1 Aconitase C-terminal domain HMA PF00403.21 gi|284164959|ref|YP_003403238.1| - 8.6e-12 45.0 0.2 9.3e-12 44.9 0.1 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain DUF4162 PF13732.1 gi|284164959|ref|YP_003403238.1| - 0.035 14.6 0.0 0.035 14.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) DHFR_1 PF00186.14 gi|284164960|ref|YP_003403239.1| - 1.1e-49 168.0 0.0 1.3e-49 167.8 0.0 1.0 1 0 0 1 1 1 1 Dihydrofolate reductase DUF2421 PF10334.4 gi|284164960|ref|YP_003403239.1| - 0.059 12.9 0.0 0.083 12.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2421) Thymidylat_synt PF00303.14 gi|284164961|ref|YP_003403240.1| - 3.5e-94 314.7 0.0 4.1e-94 314.5 0.0 1.0 1 0 0 1 1 1 1 Thymidylate synthase Peptidase_C28 PF05408.6 gi|284164961|ref|YP_003403240.1| - 0.017 14.5 0.0 0.026 14.0 0.0 1.3 1 0 0 1 1 1 0 Foot-and-mouth virus L-proteinase DUF788 PF05620.6 gi|284164962|ref|YP_003403241.1| - 0.28 11.0 3.6 0.58 10.0 2.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF788) DUF2238 PF09997.4 gi|284164963|ref|YP_003403242.1| - 0.0063 15.9 7.4 0.24 10.7 5.1 2.3 1 1 0 1 1 1 1 Predicted membrane protein (DUF2238) DUF4233 PF14017.1 gi|284164963|ref|YP_003403242.1| - 0.31 10.9 20.5 1.2 9.0 4.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4233) RNase_H_2 PF13482.1 gi|284164964|ref|YP_003403243.1| - 2.1e-35 121.9 0.0 2.8e-35 121.5 0.0 1.2 1 0 0 1 1 1 1 RNase_H superfamily HHH_5 PF14520.1 gi|284164964|ref|YP_003403243.1| - 6.7e-10 38.9 0.0 2.1e-09 37.4 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.18 gi|284164964|ref|YP_003403243.1| - 0.00087 18.8 0.0 0.0079 15.8 0.0 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.4 gi|284164964|ref|YP_003403243.1| - 0.0012 18.3 0.0 0.0057 16.1 0.0 2.0 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda DEAD PF00270.24 gi|284164965|ref|YP_003403244.1| - 3.1e-20 72.3 0.0 9.4e-19 67.5 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase DUF1998 PF09369.5 gi|284164965|ref|YP_003403244.1| - 9.1e-13 48.5 0.7 4.3e-11 43.2 0.2 2.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1998) Helicase_C PF00271.26 gi|284164965|ref|YP_003403244.1| - 7e-10 38.6 0.0 5.3e-09 35.8 0.0 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|284164965|ref|YP_003403244.1| - 2.2e-06 27.6 0.0 3.9e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Methyltransf_24 PF13578.1 gi|284164965|ref|YP_003403244.1| - 0.02 15.6 1.7 0.08 13.7 0.1 2.9 3 0 0 3 3 3 0 Methyltransferase domain SNF2_N PF00176.18 gi|284164965|ref|YP_003403244.1| - 0.071 11.8 0.0 0.11 11.2 0.0 1.2 1 0 0 1 1 1 0 SNF2 family N-terminal domain Usp PF00582.21 gi|284164966|ref|YP_003403245.1| - 2.3e-17 63.4 0.5 2.6e-17 63.2 0.4 1.0 1 0 0 1 1 1 1 Universal stress protein family ETF PF01012.16 gi|284164966|ref|YP_003403245.1| - 0.042 13.5 0.6 0.083 12.6 0.2 1.7 2 0 0 2 2 2 0 Electron transfer flavoprotein domain GARS_A PF01071.14 gi|284164967|ref|YP_003403246.1| - 5.8e-53 179.3 0.3 1.1e-52 178.3 0.0 1.6 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.10 gi|284164967|ref|YP_003403246.1| - 5.8e-26 90.8 0.1 1.2e-25 89.9 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.11 gi|284164967|ref|YP_003403246.1| - 2e-19 69.5 0.5 5.9e-19 68.0 0.1 2.0 3 0 0 3 3 3 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_4 PF13535.1 gi|284164967|ref|YP_003403246.1| - 1.8e-18 66.9 0.0 4.7e-18 65.5 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|284164967|ref|YP_003403246.1| - 4.2e-06 25.7 0.0 2.6e-05 23.1 0.0 2.1 2 1 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|284164967|ref|YP_003403246.1| - 1e-05 25.4 0.0 1.9e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|284164967|ref|YP_003403246.1| - 0.0065 15.7 0.0 0.014 14.7 0.0 1.5 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Aminotran_3 PF00202.16 gi|284164969|ref|YP_003403248.1| - 9.6e-66 221.9 0.0 3.3e-65 220.1 0.0 1.7 1 1 0 1 1 1 1 Aminotransferase class-III SnoaL PF07366.7 gi|284164970|ref|YP_003403249.1| - 1.1e-30 105.8 0.2 1.2e-30 105.7 0.1 1.0 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_2 PF12680.2 gi|284164970|ref|YP_003403249.1| - 1.7e-19 70.0 0.8 2.1e-19 69.8 0.6 1.1 1 0 0 1 1 1 1 SnoaL-like domain SnoaL_3 PF13474.1 gi|284164970|ref|YP_003403249.1| - 8.8e-06 25.7 0.1 1.1e-05 25.4 0.1 1.3 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.1 gi|284164970|ref|YP_003403249.1| - 1.6e-05 25.0 0.3 2.2e-05 24.6 0.2 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4440) LEH PF07858.7 gi|284164970|ref|YP_003403249.1| - 0.00046 20.1 0.2 0.00097 19.1 0.1 1.5 1 1 0 1 1 1 1 Limonene-1,2-epoxide hydrolase catalytic domain PHZA_PHZB PF03284.8 gi|284164970|ref|YP_003403249.1| - 0.02 13.9 0.0 0.033 13.3 0.0 1.4 1 1 0 1 1 1 0 Phenazine biosynthesis protein A/B DUF4010 PF13194.1 gi|284164971|ref|YP_003403250.1| - 2.4e-51 174.0 27.9 2.4e-51 174.0 19.4 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4010) MgtC PF02308.11 gi|284164971|ref|YP_003403250.1| - 3.1e-14 52.9 9.0 3.1e-14 52.9 6.3 3.4 3 2 0 3 3 3 1 MgtC family PadR PF03551.9 gi|284164972|ref|YP_003403251.1| - 1.6e-17 62.9 1.6 2e-17 62.7 1.1 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|284164972|ref|YP_003403251.1| - 0.00016 21.9 0.0 0.0002 21.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|284164972|ref|YP_003403251.1| - 0.001 18.8 0.1 0.0013 18.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DUF1495 PF07381.6 gi|284164972|ref|YP_003403251.1| - 0.018 14.6 0.0 0.029 14.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) HTH_34 PF13601.1 gi|284164972|ref|YP_003403251.1| - 0.023 14.7 0.0 0.029 14.4 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain TrmB PF01978.14 gi|284164972|ref|YP_003403251.1| - 0.12 12.1 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|284164972|ref|YP_003403251.1| - 0.14 11.8 2.3 3.6 7.3 0.2 2.4 3 0 0 3 3 3 0 MarR family CarboxypepD_reg PF13620.1 gi|284164974|ref|YP_003403253.1| - 2e-08 34.1 0.1 0.0021 18.0 0.0 2.4 2 0 0 2 2 2 2 Carboxypeptidase regulatory-like domain Big_1 PF02369.11 gi|284164974|ref|YP_003403253.1| - 6.9e-06 25.9 4.5 0.00052 19.8 1.2 2.7 2 0 0 2 2 2 2 Bacterial Ig-like domain (group 1) DUF2606 PF10794.4 gi|284164974|ref|YP_003403253.1| - 0.00019 20.8 0.0 0.7 9.3 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF2606) Cna_B PF05738.8 gi|284164974|ref|YP_003403253.1| - 0.00096 18.8 1.2 0.00096 18.8 0.8 2.9 3 1 0 3 3 3 1 Cna protein B-type domain phage_tail_N PF08400.5 gi|284164974|ref|YP_003403253.1| - 0.0078 15.9 0.1 0.023 14.4 0.0 1.7 2 0 0 2 2 2 1 Prophage tail fibre N-terminal MG1 PF11974.3 gi|284164974|ref|YP_003403253.1| - 0.0098 16.4 0.1 2.6 8.6 0.0 2.3 2 0 0 2 2 2 2 Alpha-2-macroglobulin MG1 domain TAT_signal PF10518.4 gi|284164974|ref|YP_003403253.1| - 0.034 14.1 0.8 0.069 13.1 0.6 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence HypA PF01155.14 gi|284164975|ref|YP_003403254.1| - 0.0089 15.7 0.4 0.018 14.7 0.3 1.6 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DUF2072 PF09845.4 gi|284164975|ref|YP_003403254.1| - 0.0094 15.8 0.1 0.016 15.1 0.1 1.4 1 0 0 1 1 1 1 Zn-ribbon containing protein (DUF2072) DZR PF12773.2 gi|284164975|ref|YP_003403254.1| - 0.021 14.6 0.3 0.039 13.7 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon Myosin_HC-like PF07058.6 gi|284164975|ref|YP_003403254.1| - 0.16 11.0 0.3 0.24 10.4 0.2 1.2 1 0 0 1 1 1 0 Myosin II heavy chain-like zf-ribbon_3 PF13248.1 gi|284164975|ref|YP_003403254.1| - 0.29 10.3 2.6 2.8 7.2 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|284164975|ref|YP_003403254.1| - 0.44 9.8 2.9 1.2 8.5 2.0 1.7 1 1 0 1 1 1 0 TFIIB zinc-binding zf-IS66 PF13005.2 gi|284164975|ref|YP_003403254.1| - 9.6 6.2 7.8 6.3 6.8 0.1 3.3 4 0 0 4 4 4 0 zinc-finger binding domain of transposase IS66 OPT PF03169.10 gi|284164976|ref|YP_003403255.1| - 7.9e-119 397.8 44.7 9.7e-119 397.5 31.0 1.1 1 0 0 1 1 1 1 OPT oligopeptide transporter protein PqqD PF05402.7 gi|284164977|ref|YP_003403256.1| - 1.1e-13 51.0 0.0 1.3e-13 50.7 0.0 1.2 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) Pyocin_S PF06958.7 gi|284164977|ref|YP_003403256.1| - 0.071 13.4 0.1 0.14 12.5 0.1 1.4 2 0 0 2 2 2 0 S-type Pyocin THF_DHG_CYH_C PF02882.14 gi|284164978|ref|YP_003403257.1| - 3.8e-68 227.6 0.6 5.1e-68 227.2 0.4 1.2 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.18 gi|284164978|ref|YP_003403257.1| - 9.8e-37 125.5 0.1 1.5e-36 124.9 0.1 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SHMT PF00464.14 gi|284164980|ref|YP_003403259.1| - 3.3e-155 516.3 0.0 3.9e-155 516.1 0.0 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Beta_elim_lyase PF01212.16 gi|284164980|ref|YP_003403259.1| - 7.6e-09 35.1 0.0 7.1e-08 31.9 0.0 2.0 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|284164980|ref|YP_003403259.1| - 1.6e-07 30.6 0.0 3.3e-07 29.5 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class I and II Trypsin_2 PF13365.1 gi|284164980|ref|YP_003403259.1| - 0.031 14.2 0.1 0.05 13.6 0.1 1.6 1 1 0 1 1 1 0 Trypsin-like peptidase domain RNase_P_p30 PF01876.11 gi|284164983|ref|YP_003403262.1| - 8e-30 103.0 0.0 1.1e-29 102.6 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit p30 PHP PF02811.14 gi|284164983|ref|YP_003403262.1| - 2.3e-05 24.2 0.0 2.8e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 PHP domain Methyltransf_31 PF13847.1 gi|284164984|ref|YP_003403263.1| - 6.7e-16 58.2 0.0 1e-15 57.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|284164984|ref|YP_003403263.1| - 2.9e-13 50.3 0.2 6.1e-13 49.3 0.1 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|284164984|ref|YP_003403263.1| - 1.3e-12 48.0 0.1 3.7e-12 46.5 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|284164984|ref|YP_003403263.1| - 4.5e-11 43.0 0.0 7.9e-11 42.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|284164984|ref|YP_003403263.1| - 1.1e-09 37.7 0.1 2.1e-09 36.8 0.0 1.4 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|284164984|ref|YP_003403263.1| - 2.6e-09 37.3 0.0 4.8e-09 36.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|284164984|ref|YP_003403263.1| - 5.8e-09 35.8 0.1 1.9e-08 34.2 0.1 1.8 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|284164984|ref|YP_003403263.1| - 3.3e-08 33.5 0.6 7.9e-08 32.3 0.3 1.7 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|284164984|ref|YP_003403263.1| - 1.4e-07 31.0 0.0 2e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|284164984|ref|YP_003403263.1| - 0.00034 19.8 0.0 0.00049 19.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) RrnaAD PF00398.15 gi|284164984|ref|YP_003403263.1| - 0.0055 15.7 0.0 0.0077 15.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase tRNA_U5-meth_tr PF05958.6 gi|284164984|ref|YP_003403263.1| - 0.0078 14.9 0.0 0.028 13.1 0.0 1.6 1 1 1 2 2 2 1 tRNA (Uracil-5-)-methyltransferase DREV PF05219.7 gi|284164984|ref|YP_003403263.1| - 0.0082 15.0 0.0 0.011 14.5 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_4 PF02390.12 gi|284164984|ref|YP_003403263.1| - 0.011 14.7 0.0 0.015 14.3 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase Methyltransf_32 PF13679.1 gi|284164984|ref|YP_003403263.1| - 0.017 14.8 0.0 0.024 14.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain PCMT PF01135.14 gi|284164984|ref|YP_003403263.1| - 0.11 11.9 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) N6_N4_Mtase PF01555.13 gi|284164984|ref|YP_003403263.1| - 0.17 11.3 0.0 0.24 10.8 0.0 1.2 1 0 0 1 1 1 0 DNA methylase RNase_P_Rpp14 PF01900.14 gi|284164985|ref|YP_003403264.1| - 1.4e-22 79.6 0.0 1.8e-22 79.2 0.0 1.2 1 0 0 1 1 1 1 Rpp14/Pop5 family Proteasome PF00227.21 gi|284164986|ref|YP_003403265.1| - 5.5e-55 185.5 0.0 6.8e-55 185.3 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|284164986|ref|YP_003403265.1| - 2.6e-14 52.1 0.1 4.5e-14 51.4 0.1 1.4 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature SBDS PF01172.13 gi|284164987|ref|YP_003403266.1| - 4.5e-24 84.0 0.0 8.2e-24 83.2 0.0 1.5 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|284164987|ref|YP_003403266.1| - 5.8e-20 71.2 0.0 8.8e-20 70.6 0.0 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain YbjN PF10722.4 gi|284164987|ref|YP_003403266.1| - 0.063 13.3 0.6 6.8 6.7 0.0 2.4 2 0 0 2 2 2 0 Putative bacterial sensory transduction regulator FUN14 PF04930.10 gi|284164988|ref|YP_003403267.1| - 4.3e-14 52.5 2.5 5.8e-14 52.1 1.8 1.2 1 0 0 1 1 1 1 FUN14 family DUF4646 PF15496.1 gi|284164988|ref|YP_003403267.1| - 0.097 12.7 0.0 0.13 12.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4646) Tmemb_14 PF03647.8 gi|284164988|ref|YP_003403267.1| - 3 8.2 8.4 2.2 8.7 1.4 2.7 2 1 1 3 3 3 0 Transmembrane proteins 14C ATPase_gene1 PF09527.5 gi|284164988|ref|YP_003403267.1| - 5.3 6.9 9.6 10 6.0 2.0 2.5 2 1 0 2 2 2 0 Putative F0F1-ATPase subunit (ATPase_gene1) MMR_HSR1 PF01926.18 gi|284164989|ref|YP_003403268.1| - 5.3e-18 65.0 0.0 1.1e-17 63.9 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|284164989|ref|YP_003403268.1| - 3e-11 43.1 0.0 7.7e-11 41.7 0.0 1.7 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP-bdg_N PF13167.1 gi|284164989|ref|YP_003403268.1| - 4.9e-09 36.1 0.0 1.5e-08 34.6 0.0 1.8 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal cobW PF02492.14 gi|284164989|ref|YP_003403268.1| - 2.4e-06 27.1 0.6 0.00021 20.7 0.1 2.4 1 1 1 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain FeoB_N PF02421.13 gi|284164989|ref|YP_003403268.1| - 0.00017 20.8 0.2 0.19 11.0 0.0 2.6 3 0 0 3 3 3 2 Ferrous iron transport protein B Arf PF00025.16 gi|284164989|ref|YP_003403268.1| - 0.00054 19.2 0.2 0.51 9.5 0.1 2.4 2 0 0 2 2 2 2 ADP-ribosylation factor family Miro PF08477.8 gi|284164989|ref|YP_003403268.1| - 0.00064 20.2 0.7 0.0028 18.1 0.0 2.5 3 1 0 3 3 1 1 Miro-like protein AAA_18 PF13238.1 gi|284164989|ref|YP_003403268.1| - 0.003 17.8 0.6 0.026 14.8 0.0 2.9 3 1 1 4 4 3 1 AAA domain PduV-EutP PF10662.4 gi|284164989|ref|YP_003403268.1| - 0.0068 15.9 0.0 0.44 10.0 0.0 2.4 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation AAA_17 PF13207.1 gi|284164989|ref|YP_003403268.1| - 0.0077 17.0 2.4 0.029 15.1 0.1 2.9 2 2 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|284164989|ref|YP_003403268.1| - 0.0082 16.1 1.1 0.053 13.5 0.0 2.8 2 1 0 2 2 2 1 AAA ATPase domain MobB PF03205.9 gi|284164989|ref|YP_003403268.1| - 0.024 14.3 0.0 0.057 13.1 0.0 1.8 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.1 gi|284164989|ref|YP_003403268.1| - 0.032 14.1 0.0 0.085 12.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|284164989|ref|YP_003403268.1| - 0.052 13.8 0.0 0.16 12.3 0.0 2.0 2 0 0 2 2 2 0 ABC transporter AAA_33 PF13671.1 gi|284164989|ref|YP_003403268.1| - 0.056 13.3 0.7 0.48 10.2 0.0 2.7 2 1 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|284164989|ref|YP_003403268.1| - 0.059 12.5 0.0 0.14 11.3 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|284164989|ref|YP_003403268.1| - 0.12 11.7 1.1 0.65 9.3 0.1 2.8 2 1 1 4 4 4 0 AAA domain AAA_23 PF13476.1 gi|284164989|ref|YP_003403268.1| - 0.12 12.6 3.7 11 6.3 1.0 2.5 3 0 0 3 3 3 0 AAA domain G-alpha PF00503.15 gi|284164989|ref|YP_003403268.1| - 0.15 10.7 1.1 0.2 10.2 0.3 1.5 2 0 0 2 2 2 0 G-protein alpha subunit Thiolase_C PF02803.13 gi|284164990|ref|YP_003403269.1| - 2.4e-07 30.2 0.1 5.6e-07 29.0 0.1 1.6 1 0 0 1 1 1 1 Thiolase, C-terminal domain Thiolase_N PF00108.18 gi|284164990|ref|YP_003403269.1| - 0.00079 18.4 0.0 0.0019 17.2 0.0 1.8 2 0 0 2 2 2 1 Thiolase, N-terminal domain DUF35 PF01796.12 gi|284164991|ref|YP_003403270.1| - 9.5e-09 35.3 1.7 1.4e-08 34.8 1.2 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain TolB_N PF04052.8 gi|284164991|ref|YP_003403270.1| - 0.12 12.4 0.0 0.16 12.0 0.0 1.1 1 0 0 1 1 1 0 TolB amino-terminal domain Scm3 PF10384.4 gi|284164991|ref|YP_003403270.1| - 0.39 10.2 0.1 0.39 10.2 0.0 1.6 2 0 0 2 2 2 0 Centromere protein Scm3 Apolipoprotein PF01442.13 gi|284164992|ref|YP_003403271.1| - 0.012 15.1 1.2 0.16 11.4 0.5 2.1 2 0 0 2 2 2 0 Apolipoprotein A1/A4/E domain YtxH PF12732.2 gi|284164992|ref|YP_003403271.1| - 0.017 15.4 0.2 1.2 9.4 0.0 2.8 2 1 1 3 3 3 0 YtxH-like protein Hemerythrin PF01814.18 gi|284164992|ref|YP_003403271.1| - 0.087 12.9 2.6 0.86 9.7 1.8 2.4 1 1 0 1 1 1 0 Hemerythrin HHE cation binding domain gpW PF02831.10 gi|284164992|ref|YP_003403271.1| - 0.13 11.8 2.3 0.16 11.5 0.1 2.1 2 1 0 2 2 2 0 gpW H-kinase_dim PF02895.9 gi|284164992|ref|YP_003403271.1| - 0.22 11.9 9.0 13 6.2 0.1 3.5 3 1 0 3 3 3 0 Signal transducing histidine kinase, homodimeric domain DUF4510 PF14971.1 gi|284164992|ref|YP_003403271.1| - 0.24 11.5 7.0 1.5 8.9 1.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4510) RGCC PF15151.1 gi|284164992|ref|YP_003403271.1| - 6.2 7.2 10.4 5.4 7.4 0.0 3.1 3 0 0 3 3 3 0 Response gene to complement 32 protein family RNase_H_2 PF13482.1 gi|284164995|ref|YP_003403274.1| - 8.5e-33 113.4 0.0 1.1e-32 113.0 0.0 1.2 1 0 0 1 1 1 1 RNase_H superfamily HHH_5 PF14520.1 gi|284164995|ref|YP_003403274.1| - 0.034 14.3 0.0 0.077 13.1 0.0 1.6 1 0 0 1 1 1 0 Helix-hairpin-helix domain DNA_pol_A_exo1 PF01612.15 gi|284164995|ref|YP_003403274.1| - 0.052 13.0 0.0 0.11 11.9 0.0 1.5 2 0 0 2 2 2 0 3'-5' exonuclease DNA_pol_B_exo2 PF10108.4 gi|284164995|ref|YP_003403274.1| - 0.1 12.0 0.0 0.3 10.5 0.0 1.7 1 1 1 2 2 2 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB Catalase PF00199.14 gi|284164998|ref|YP_003403277.1| - 5e-160 532.3 0.3 6.6e-160 531.9 0.2 1.1 1 0 0 1 1 1 1 Catalase Catalase-rel PF06628.7 gi|284164998|ref|YP_003403277.1| - 6.2e-22 77.2 0.2 1.3e-21 76.2 0.1 1.6 1 0 0 1 1 1 1 Catalase-related immune-responsive DJ-1_PfpI PF01965.19 gi|284164998|ref|YP_003403277.1| - 5.9e-13 48.5 0.3 2.3e-12 46.6 0.2 1.9 1 1 0 1 1 1 1 DJ-1/PfpI family Na_H_Exchanger PF00999.16 gi|284164999|ref|YP_003403278.1| - 1.1e-36 126.2 29.4 1.4e-36 125.8 20.4 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TAT_signal PF10518.4 gi|284165000|ref|YP_003403279.1| - 0.036 14.0 0.6 0.036 14.0 0.4 2.4 3 0 0 3 3 3 0 TAT (twin-arginine translocation) pathway signal sequence COX1 PF00115.15 gi|284165001|ref|YP_003403280.1| - 0.16 10.5 41.9 0.077 11.6 11.0 5.0 1 1 2 3 3 3 0 Cytochrome C and Quinol oxidase polypeptide I ThiS PF02597.15 gi|284165002|ref|YP_003403281.1| - 6e-06 26.6 0.0 2.5e-05 24.6 0.0 2.0 1 1 0 1 1 1 1 ThiS family HATPase_c PF02518.21 gi|284165004|ref|YP_003403283.1| - 1.6e-27 95.4 0.0 3.2e-27 94.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|284165004|ref|YP_003403283.1| - 1.6e-11 44.0 0.2 1.6e-11 44.0 0.1 2.5 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.1 gi|284165004|ref|YP_003403283.1| - 5.8e-05 22.7 0.0 9.8e-05 21.9 0.0 1.4 1 0 0 1 1 1 1 GHKL domain IncA PF04156.9 gi|284165004|ref|YP_003403283.1| - 0.034 13.7 0.1 0.034 13.7 0.1 2.4 2 0 0 2 2 2 0 IncA protein HATPase_c_2 PF13581.1 gi|284165004|ref|YP_003403283.1| - 0.042 13.6 0.0 0.1 12.4 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain ATP-synt_E PF05680.7 gi|284165004|ref|YP_003403283.1| - 0.17 11.8 1.4 0.3 11.0 1.0 1.3 1 0 0 1 1 1 0 ATP synthase E chain DivIC PF04977.10 gi|284165004|ref|YP_003403283.1| - 0.6 9.6 4.4 1.2 8.6 3.1 1.5 1 0 0 1 1 1 0 Septum formation initiator DUF904 PF06005.7 gi|284165004|ref|YP_003403283.1| - 6.6 7.0 11.4 8.3 6.7 5.9 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF904) DUF4233 PF14017.1 gi|284165004|ref|YP_003403283.1| - 7 6.6 13.2 6.3 6.7 3.8 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF4233) Radical_SAM PF04055.16 gi|284165005|ref|YP_003403284.1| - 5e-21 75.5 0.0 1.8e-20 73.7 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|284165005|ref|YP_003403284.1| - 8.1e-09 35.7 0.0 1.9e-08 34.5 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|284165005|ref|YP_003403284.1| - 4.1e-07 30.0 0.0 1.1e-06 28.7 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF3799 PF12684.2 gi|284165005|ref|YP_003403284.1| - 0.17 11.1 0.0 0.27 10.5 0.0 1.2 1 0 0 1 1 1 0 PDDEXK-like domain of unknown function (DUF3799) PaaB PF06243.6 gi|284165006|ref|YP_003403285.1| - 1.8e-14 53.6 0.0 2e-14 53.4 0.0 1.1 1 0 0 1 1 1 1 Phenylacetic acid degradation B Radical_SAM PF04055.16 gi|284165007|ref|YP_003403286.1| - 8.1e-20 71.6 0.0 1.3e-19 70.9 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|284165007|ref|YP_003403286.1| - 3.6e-05 23.9 0.0 6.9e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain TP_methylase PF00590.15 gi|284165007|ref|YP_003403286.1| - 0.00084 19.0 0.1 0.0041 16.8 0.0 2.1 2 0 0 2 2 2 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DAGK_cat PF00781.19 gi|284165007|ref|YP_003403286.1| - 0.0021 17.5 0.1 0.0041 16.5 0.1 1.4 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain Fer4_14 PF13394.1 gi|284165007|ref|YP_003403286.1| - 0.0037 17.2 0.0 0.0077 16.2 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain CPSase_L_D2 PF02786.12 gi|284165008|ref|YP_003403287.1| - 3.2e-70 235.7 0.2 1.2e-69 233.7 0.1 2.0 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|284165008|ref|YP_003403287.1| - 1.3e-42 144.3 0.4 4.3e-42 142.6 0.1 2.1 2 0 0 2 2 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain Biotin_carb_C PF02785.14 gi|284165008|ref|YP_003403287.1| - 7e-34 116.0 0.0 2.1e-33 114.5 0.0 1.9 2 0 0 2 2 1 1 Biotin carboxylase C-terminal domain Biotin_lipoyl PF00364.17 gi|284165008|ref|YP_003403287.1| - 8.7e-18 63.7 7.1 3.2e-17 61.9 4.9 2.0 1 0 0 1 1 1 1 Biotin-requiring enzyme ATP-grasp_4 PF13535.1 gi|284165008|ref|YP_003403287.1| - 3.4e-13 49.7 0.3 8.6e-13 48.4 0.2 1.7 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|284165008|ref|YP_003403287.1| - 1e-09 37.6 0.0 2.3e-07 29.8 0.0 2.1 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon Biotin_lipoyl_2 PF13533.1 gi|284165008|ref|YP_003403287.1| - 1e-08 34.7 4.3 0.00012 21.6 0.2 3.0 2 1 1 3 3 3 2 Biotin-lipoyl like Dala_Dala_lig_C PF07478.8 gi|284165008|ref|YP_003403287.1| - 2.1e-06 27.2 0.0 4.6e-06 26.1 0.0 1.6 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.17 gi|284165008|ref|YP_003403287.1| - 4.9e-05 22.7 0.0 9.4e-05 21.8 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain HlyD PF00529.15 gi|284165008|ref|YP_003403287.1| - 0.00039 19.8 3.7 0.032 13.5 0.4 2.6 1 1 1 2 2 2 2 HlyD family secretion protein GARS_A PF01071.14 gi|284165008|ref|YP_003403287.1| - 0.00044 19.8 0.0 0.001 18.6 0.0 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RnfC_N PF13375.1 gi|284165008|ref|YP_003403287.1| - 0.0042 16.7 0.7 0.019 14.7 0.4 2.1 2 1 0 2 2 2 1 RnfC Barrel sandwich hybrid domain HlyD_2 PF12700.2 gi|284165008|ref|YP_003403287.1| - 0.0053 15.9 1.6 0.042 12.9 0.7 2.2 1 1 1 2 2 2 1 HlyD family secretion protein HlyD_3 PF13437.1 gi|284165008|ref|YP_003403287.1| - 0.013 15.7 1.4 2.2 8.6 0.1 2.8 2 0 0 2 2 2 0 HlyD family secretion protein GCV_H PF01597.14 gi|284165008|ref|YP_003403287.1| - 0.12 12.0 2.6 0.2 11.3 1.1 1.9 2 0 0 2 2 2 0 Glycine cleavage H-protein PTS_EIIA_1 PF00358.15 gi|284165008|ref|YP_003403287.1| - 0.17 11.4 2.8 1.9 8.0 0.1 3.1 3 1 1 4 4 4 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CN_hydrolase PF00795.17 gi|284165009|ref|YP_003403288.1| - 1.7e-30 105.7 0.0 2.2e-30 105.4 0.0 1.1 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Polyketide_cyc2 PF10604.4 gi|284165010|ref|YP_003403289.1| - 1.7e-18 67.1 1.0 1.9e-18 66.9 0.7 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport COXG PF06240.8 gi|284165010|ref|YP_003403289.1| - 1.1e-05 25.1 0.0 1.4e-05 24.7 0.0 1.3 1 1 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) Polyketide_cyc PF03364.15 gi|284165010|ref|YP_003403289.1| - 0.00011 22.2 0.3 0.00014 21.8 0.2 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport DUF2505 PF10698.4 gi|284165010|ref|YP_003403289.1| - 0.016 14.7 0.1 1.6 8.1 0.0 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF2505) AHSA1 PF08327.6 gi|284165010|ref|YP_003403289.1| - 0.056 13.5 0.3 0.59 10.2 0.2 2.1 1 1 0 1 1 1 0 Activator of Hsp90 ATPase homolog 1-like protein FaeA PF04703.7 gi|284165011|ref|YP_003403290.1| - 0.0023 18.0 0.0 0.0029 17.7 0.0 1.2 1 0 0 1 1 1 1 FaeA-like protein HTH_24 PF13412.1 gi|284165011|ref|YP_003403290.1| - 0.098 12.0 0.0 3.4 7.1 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding CoatB PF10389.4 gi|284165012|ref|YP_003403291.1| - 0.039 13.8 7.8 0.91 9.4 0.7 2.2 2 0 0 2 2 2 0 Bacteriophage coat protein B DUF3493 PF11998.3 gi|284165012|ref|YP_003403291.1| - 2.7 7.9 5.7 4 7.4 4.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3493) HCV_NS4a PF01006.15 gi|284165012|ref|YP_003403291.1| - 4.7 6.8 7.9 2.6 7.6 4.4 1.5 1 1 0 1 1 1 0 Hepatitis C virus non-structural protein NS4a OAD_gamma PF04277.8 gi|284165013|ref|YP_003403292.1| - 1.4 9.3 8.4 0.1 13.0 2.3 1.7 1 1 1 2 2 2 0 Oxaloacetate decarboxylase, gamma chain Carboxyl_trans PF01039.17 gi|284165014|ref|YP_003403293.1| - 6.1e-199 661.4 0.0 6.9e-199 661.2 0.0 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.6 gi|284165014|ref|YP_003403293.1| - 0.00014 21.1 0.0 0.00026 20.2 0.0 1.4 1 0 0 1 1 1 1 Malonate decarboxylase gamma subunit (MdcE) Peripla_BP_6 PF13458.1 gi|284165015|ref|YP_003403294.1| - 6e-21 75.1 4.1 4.9e-15 55.7 0.3 2.2 2 0 0 2 2 2 2 Periplasmic binding protein ANF_receptor PF01094.23 gi|284165015|ref|YP_003403294.1| - 1e-19 70.5 0.1 6.3e-16 58.0 0.0 2.1 2 0 0 2 2 2 2 Receptor family ligand binding region ABC_tran PF00005.22 gi|284165016|ref|YP_003403295.1| - 3.5e-31 108.3 0.0 5.2e-31 107.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284165016|ref|YP_003403295.1| - 2e-10 41.1 0.0 0.00035 20.6 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|284165016|ref|YP_003403295.1| - 0.00033 19.9 1.1 0.0076 15.4 0.0 2.4 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|284165016|ref|YP_003403295.1| - 0.00044 19.7 0.1 0.00088 18.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|284165016|ref|YP_003403295.1| - 0.00047 20.5 0.0 0.00061 20.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|284165016|ref|YP_003403295.1| - 0.0044 17.0 0.0 0.01 15.8 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.1 gi|284165016|ref|YP_003403295.1| - 0.0064 16.0 0.1 0.016 14.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|284165016|ref|YP_003403295.1| - 0.0079 16.3 0.3 0.072 13.2 0.1 2.1 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|284165016|ref|YP_003403295.1| - 0.0087 15.5 0.6 0.018 14.4 0.3 1.6 2 0 0 2 2 2 1 AAA-like domain MutS_V PF00488.16 gi|284165016|ref|YP_003403295.1| - 0.012 15.0 0.0 0.018 14.4 0.0 1.2 1 0 0 1 1 1 0 MutS domain V AAA_33 PF13671.1 gi|284165016|ref|YP_003403295.1| - 0.057 13.2 0.8 0.12 12.2 0.3 1.7 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|284165016|ref|YP_003403295.1| - 0.082 11.9 0.0 0.15 11.1 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin AAA_14 PF13173.1 gi|284165016|ref|YP_003403295.1| - 0.084 12.7 0.0 0.24 11.3 0.0 2.1 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|284165016|ref|YP_003403295.1| - 0.11 11.6 0.0 0.19 10.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Oxidored_FMN PF00724.15 gi|284165016|ref|YP_003403295.1| - 0.13 11.2 0.0 0.2 10.5 0.0 1.2 1 0 0 1 1 1 0 NADH:flavin oxidoreductase / NADH oxidase family AAA_17 PF13207.1 gi|284165016|ref|YP_003403295.1| - 0.13 13.0 0.2 0.3 11.9 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|284165016|ref|YP_003403295.1| - 0.15 12.2 0.1 0.24 11.5 0.1 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.1 gi|284165016|ref|YP_003403295.1| - 0.46 10.4 2.3 12 5.9 1.6 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ABC_tran PF00005.22 gi|284165017|ref|YP_003403296.1| - 3.9e-30 104.9 0.0 5.1e-30 104.5 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284165017|ref|YP_003403296.1| - 4.1e-12 46.6 1.2 1.6e-06 28.2 0.1 2.1 1 1 0 2 2 2 2 AAA domain BCA_ABC_TP_C PF12399.3 gi|284165017|ref|YP_003403296.1| - 1.2e-08 34.3 0.2 2.3e-08 33.5 0.1 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_29 PF13555.1 gi|284165017|ref|YP_003403296.1| - 2.3e-05 23.8 0.3 4.8e-05 22.7 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|284165017|ref|YP_003403296.1| - 6e-05 23.4 1.0 0.0001 22.6 0.7 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|284165017|ref|YP_003403296.1| - 0.00029 20.1 0.6 0.19 10.9 0.2 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|284165017|ref|YP_003403296.1| - 0.041 13.8 0.1 0.46 10.4 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.1 gi|284165017|ref|YP_003403296.1| - 0.052 12.5 0.2 2.7 6.9 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain MMR_HSR1 PF01926.18 gi|284165017|ref|YP_003403296.1| - 0.062 13.2 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase DUF258 PF03193.11 gi|284165017|ref|YP_003403296.1| - 0.098 11.8 0.0 0.17 11.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MukB PF04310.7 gi|284165017|ref|YP_003403296.1| - 0.14 11.4 0.1 0.21 10.8 0.0 1.2 1 0 0 1 1 1 0 MukB N-terminal AAA_22 PF13401.1 gi|284165017|ref|YP_003403296.1| - 0.27 11.3 1.0 1.5 8.9 0.7 2.3 1 1 0 1 1 1 0 AAA domain BPD_transp_2 PF02653.11 gi|284165018|ref|YP_003403297.1| - 4.8e-43 147.0 26.6 4.8e-43 147.0 18.5 2.4 2 1 0 2 2 2 1 Branched-chain amino acid transport system / permease component Coa1 PF08695.5 gi|284165018|ref|YP_003403297.1| - 0.1 12.0 0.0 0.25 10.8 0.0 1.6 1 0 0 1 1 1 0 Cytochrome oxidase complex assembly protein 1 E1-E2_ATPase PF00122.15 gi|284165018|ref|YP_003403297.1| - 0.14 11.1 2.8 0.37 9.7 0.0 2.5 2 1 0 2 2 2 0 E1-E2 ATPase BPD_transp_2 PF02653.11 gi|284165019|ref|YP_003403298.1| - 8.9e-38 129.7 43.2 8.9e-38 129.7 29.9 1.5 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component FUSC-like PF12805.2 gi|284165019|ref|YP_003403298.1| - 9.5 5.0 7.6 20 3.9 5.3 1.6 1 0 0 1 1 1 0 FUSC-like inner membrane protein yccS SNF PF00209.13 gi|284165020|ref|YP_003403299.1| - 5.3e-60 203.3 36.7 3.4e-34 118.2 13.5 2.0 1 1 1 2 2 2 2 Sodium:neurotransmitter symporter family adh_short PF00106.20 gi|284165021|ref|YP_003403300.1| - 7.7e-23 81.2 0.2 1e-22 80.7 0.1 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|284165021|ref|YP_003403300.1| - 3.2e-19 69.6 0.0 1.7e-18 67.2 0.0 1.8 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Epimerase PF01370.16 gi|284165021|ref|YP_003403300.1| - 1.7e-09 37.4 0.1 3.3e-09 36.5 0.1 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family KR PF08659.5 gi|284165021|ref|YP_003403300.1| - 2.5e-06 27.3 0.2 3.5e-06 26.8 0.2 1.3 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|284165021|ref|YP_003403300.1| - 0.00027 20.9 0.6 0.00059 19.8 0.3 1.5 1 1 0 1 1 1 1 NADH(P)-binding RmlD_sub_bind PF04321.12 gi|284165021|ref|YP_003403300.1| - 0.022 13.6 0.1 0.032 13.1 0.0 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|284165021|ref|YP_003403300.1| - 0.041 12.5 0.0 0.057 12.1 0.0 1.2 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family Response_reg PF00072.19 gi|284165022|ref|YP_003403301.1| - 1.7e-20 73.0 0.0 2.1e-20 72.8 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain GDPD PF03009.12 gi|284165023|ref|YP_003403302.1| - 4e-27 95.3 0.0 8e-25 87.8 0.0 2.1 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family HemeBinding_Shp PF11545.3 gi|284165023|ref|YP_003403302.1| - 0.12 12.1 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 Cell surface heme-binding protein Shp UPF0047 PF01894.12 gi|284165024|ref|YP_003403303.1| - 3.6e-33 113.8 0.0 4.3e-33 113.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 HEAT_2 PF13646.1 gi|284165025|ref|YP_003403304.1| - 1.6e-18 66.7 25.0 1.1e-07 32.0 0.7 4.4 1 1 2 4 4 4 4 HEAT repeats Arm PF00514.18 gi|284165025|ref|YP_003403304.1| - 2.2e-12 46.2 3.2 0.087 12.6 0.0 6.2 6 0 0 6 6 6 4 Armadillo/beta-catenin-like repeat HEAT_EZ PF13513.1 gi|284165025|ref|YP_003403304.1| - 3.4e-12 46.4 36.5 5.4e-06 26.7 1.3 7.6 3 3 4 7 7 7 5 HEAT-like repeat HEAT PF02985.17 gi|284165025|ref|YP_003403304.1| - 1.5e-10 40.2 17.6 0.021 14.8 0.0 7.2 7 0 0 7 7 7 3 HEAT repeat Cnd1 PF12717.2 gi|284165025|ref|YP_003403304.1| - 4.8e-08 33.0 0.0 0.0033 17.3 0.0 3.9 2 1 1 3 3 3 2 non-SMC mitotic condensation complex subunit 1 Adaptin_N PF01602.15 gi|284165025|ref|YP_003403304.1| - 0.00011 20.7 0.1 0.0016 16.8 0.1 2.4 1 1 2 3 3 3 1 Adaptin N terminal region TPR_16 PF13432.1 gi|284165025|ref|YP_003403304.1| - 0.044 14.4 0.4 0.044 14.4 0.3 4.6 4 2 0 4 4 4 0 Tetratricopeptide repeat TPR_19 PF14559.1 gi|284165025|ref|YP_003403304.1| - 0.07 13.4 8.1 0.97 9.8 0.1 3.7 4 0 0 4 4 4 0 Tetratricopeptide repeat SpoVR PF04293.8 gi|284165026|ref|YP_003403305.1| - 1.5e-86 290.4 6.7 1.8e-74 250.6 1.1 2.1 2 0 0 2 2 2 2 SpoVR like protein DUF960 PF06124.6 gi|284165026|ref|YP_003403305.1| - 0.032 14.4 0.2 0.13 12.4 0.2 2.0 2 0 0 2 2 2 0 Staphylococcal protein of unknown function (DUF960) DUF444 PF04285.7 gi|284165027|ref|YP_003403306.1| - 1.8e-89 300.3 0.6 2.1e-89 300.1 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF444) Tautomerase_2 PF14552.1 gi|284165027|ref|YP_003403306.1| - 0.11 12.5 0.2 9.4 6.3 0.0 2.5 2 0 0 2 2 2 0 Tautomerase enzyme AAA_PrkA PF08298.6 gi|284165028|ref|YP_003403307.1| - 4.4e-12 45.3 0.0 1.3e-09 37.2 0.0 3.4 2 1 0 2 2 2 2 PrkA AAA domain PrkA PF06798.7 gi|284165028|ref|YP_003403307.1| - 7.2e-07 28.7 2.6 1.3e-06 27.9 0.5 2.2 2 1 0 2 2 2 1 PrkA serine protein kinase C-terminal domain PrkA PF06798.7 gi|284165029|ref|YP_003403308.1| - 3e-76 256.0 8.1 3e-76 256.0 5.6 2.0 2 0 0 2 2 2 1 PrkA serine protein kinase C-terminal domain AAA_PrkA PF08298.6 gi|284165029|ref|YP_003403308.1| - 6.8e-64 215.8 0.1 1e-63 215.1 0.0 1.3 1 0 0 1 1 1 1 PrkA AAA domain AAA_5 PF07728.9 gi|284165029|ref|YP_003403308.1| - 0.16 11.6 1.6 11 5.6 0.2 2.9 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) DUF2188 PF09954.4 gi|284165030|ref|YP_003403309.1| - 0.00019 21.2 0.1 0.0004 20.2 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2188) UPF0179 PF03684.8 gi|284165031|ref|YP_003403310.1| - 2.3e-49 166.6 0.0 2.5e-49 166.5 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) DDE_Tnp_1_6 PF13751.1 gi|284165031|ref|YP_003403310.1| - 0.00016 21.6 0.1 0.00054 19.9 0.0 1.8 2 0 0 2 2 2 1 Transposase DDE domain PRKCSH_1 PF13015.1 gi|284165031|ref|YP_003403310.1| - 0.1 12.0 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 Glucosidase II beta subunit-like protein PHP_C PF13263.1 gi|284165032|ref|YP_003403311.1| - 1e-23 82.5 1.8 1.1e-23 82.4 0.4 1.7 2 0 0 2 2 2 1 PHP-associated PHP PF02811.14 gi|284165032|ref|YP_003403311.1| - 2.1e-17 63.4 0.0 7.5e-17 61.6 0.0 2.0 1 1 0 1 1 1 1 PHP domain Asn_synthase PF00733.16 gi|284165033|ref|YP_003403312.1| - 4.6e-44 150.8 1.3 7.6e-44 150.1 0.9 1.3 1 0 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.12 gi|284165033|ref|YP_003403312.1| - 0.01 14.7 0.0 0.02 13.7 0.0 1.5 1 0 0 1 1 1 0 NAD synthase tRNA_Me_trans PF03054.11 gi|284165033|ref|YP_003403312.1| - 0.025 13.1 0.1 0.036 12.6 0.1 1.3 1 0 0 1 1 1 0 tRNA methyl transferase ParA PF10609.4 gi|284165035|ref|YP_003403314.1| - 7.9e-35 118.6 0.1 1.4e-34 117.8 0.1 1.3 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|284165035|ref|YP_003403314.1| - 1.4e-19 70.2 0.0 2.4e-19 69.5 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF59 PF01883.14 gi|284165035|ref|YP_003403314.1| - 1.2e-08 34.8 0.4 4.1e-08 33.0 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function DUF59 AAA_31 PF13614.1 gi|284165035|ref|YP_003403314.1| - 1.2e-08 34.9 0.0 1.6e-06 28.1 0.0 2.5 3 0 0 3 3 3 1 AAA domain ArsA_ATPase PF02374.10 gi|284165035|ref|YP_003403314.1| - 3.6e-07 29.5 2.9 0.00027 20.1 0.7 2.9 2 1 1 3 3 3 2 Anion-transporting ATPase MipZ PF09140.6 gi|284165035|ref|YP_003403314.1| - 2.5e-05 23.4 0.1 6.4e-05 22.1 0.1 1.8 1 1 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.1 gi|284165035|ref|YP_003403314.1| - 5.1e-05 22.9 0.1 0.058 13.0 0.0 2.2 2 0 0 2 2 2 2 AAA domain VirC1 PF07015.6 gi|284165035|ref|YP_003403314.1| - 0.0017 17.4 0.1 0.0027 16.7 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein TrwB_AAD_bind PF10412.4 gi|284165035|ref|YP_003403314.1| - 0.014 14.0 0.2 0.6 8.6 0.0 2.1 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain SRP54 PF00448.17 gi|284165035|ref|YP_003403314.1| - 0.017 14.5 0.2 0.025 14.0 0.1 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_25 PF13481.1 gi|284165035|ref|YP_003403314.1| - 0.046 13.1 0.0 0.087 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain YhjQ PF06564.7 gi|284165035|ref|YP_003403314.1| - 0.049 12.9 0.1 0.85 8.9 0.1 2.1 2 0 0 2 2 2 0 YhjQ protein Fer4_NifH PF00142.13 gi|284165035|ref|YP_003403314.1| - 0.05 12.7 0.1 0.16 11.1 0.2 1.7 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family APS_kinase PF01583.15 gi|284165035|ref|YP_003403314.1| - 0.083 12.5 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_19 PF13245.1 gi|284165035|ref|YP_003403314.1| - 0.093 12.4 2.4 0.67 9.7 0.4 2.4 2 0 0 2 2 2 0 Part of AAA domain NB-ARC PF00931.17 gi|284165035|ref|YP_003403314.1| - 0.23 10.3 0.2 0.36 9.6 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain DUF3292 PF11696.3 gi|284165036|ref|YP_003403315.1| - 0.036 11.9 1.2 0.04 11.7 0.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3292) DUF3649 PF12365.3 gi|284165036|ref|YP_003403315.1| - 0.1 12.1 0.2 0.1 12.1 0.1 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF3649) DUF2592 PF10766.4 gi|284165036|ref|YP_003403315.1| - 1 8.7 8.1 2.4 7.5 1.6 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2592) Lig_chan PF00060.21 gi|284165036|ref|YP_003403315.1| - 2.4 7.8 4.9 11 5.6 0.1 2.1 2 0 0 2 2 2 0 Ligand-gated ion channel Yip1 PF04893.12 gi|284165037|ref|YP_003403316.1| - 0.037 13.5 4.8 0.044 13.2 3.3 1.1 1 0 0 1 1 1 0 Yip1 domain DUF1648 PF07853.6 gi|284165037|ref|YP_003403316.1| - 0.15 11.5 0.1 0.15 11.5 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1648) Oleosin PF01277.12 gi|284165037|ref|YP_003403316.1| - 0.18 11.3 1.7 0.32 10.5 1.2 1.5 1 1 0 1 1 1 0 Oleosin Lig_chan PF00060.21 gi|284165037|ref|YP_003403316.1| - 0.69 9.6 3.4 2.8 7.6 0.0 2.1 2 0 0 2 2 2 0 Ligand-gated ion channel UPF0197 PF05251.7 gi|284165037|ref|YP_003403316.1| - 0.73 10.1 4.9 1.5 9.1 3.4 1.5 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0197) PgaD PF13994.1 gi|284165037|ref|YP_003403316.1| - 3.9 6.9 6.8 18 4.7 4.8 1.8 1 1 0 1 1 1 0 PgaD-like protein COX4_pro_2 PF07835.7 gi|284165037|ref|YP_003403316.1| - 6.9 6.7 9.6 3.5 7.6 1.1 2.2 2 0 0 2 2 2 0 Bacterial aa3 type cytochrome c oxidase subunit IV NrfD PF03916.9 gi|284165038|ref|YP_003403317.1| - 1.3e-20 74.0 19.9 1.3e-20 74.0 13.8 1.6 2 0 0 2 2 2 1 Polysulphide reductase, NrfD Fer4_11 PF13247.1 gi|284165039|ref|YP_003403318.1| - 3.2e-18 65.4 16.1 1.6e-15 56.7 3.7 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|284165039|ref|YP_003403318.1| - 2.3e-17 63.1 15.4 1.1e-05 25.7 1.4 4.4 4 0 0 4 4 4 4 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|284165039|ref|YP_003403318.1| - 3.5e-12 46.3 21.7 5.1e-09 36.2 4.6 3.3 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|284165039|ref|YP_003403318.1| - 2.6e-08 33.5 28.0 3.3e-05 23.5 5.5 3.6 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|284165039|ref|YP_003403318.1| - 4.5e-08 32.5 11.5 3.2e-05 23.5 1.4 4.8 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4 PF00037.22 gi|284165039|ref|YP_003403318.1| - 8e-08 31.5 34.8 0.00011 21.6 2.4 4.9 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_17 PF13534.1 gi|284165039|ref|YP_003403318.1| - 7.7e-07 29.3 17.8 0.00038 20.7 1.3 3.9 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|284165039|ref|YP_003403318.1| - 1.2e-06 28.1 36.5 0.00051 19.7 1.4 4.7 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_8 PF13183.1 gi|284165039|ref|YP_003403318.1| - 3e-05 23.9 23.8 0.01 15.8 6.1 3.6 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|284165039|ref|YP_003403318.1| - 0.0012 19.2 40.6 0.35 11.5 3.8 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_4 PF12800.2 gi|284165039|ref|YP_003403318.1| - 0.002 18.3 3.0 0.002 18.3 2.1 4.5 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|284165039|ref|YP_003403318.1| - 0.0051 17.5 24.4 0.55 11.0 3.1 4.6 3 1 0 4 4 4 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|284165039|ref|YP_003403318.1| - 0.013 15.2 23.3 0.13 12.1 6.3 3.6 3 0 0 3 3 3 0 4Fe-4S dicluster domain TAT_signal PF10518.4 gi|284165039|ref|YP_003403318.1| - 0.026 14.5 2.0 0.047 13.7 1.4 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Fer4_15 PF13459.1 gi|284165039|ref|YP_003403318.1| - 0.095 13.2 0.4 0.095 13.2 0.3 4.5 5 0 0 5 5 5 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|284165039|ref|YP_003403318.1| - 4.3 7.8 29.0 19 5.7 0.2 4.6 3 2 0 3 3 3 0 4Fe-4S dicluster domain Cupin_2 PF07883.6 gi|284165040|ref|YP_003403319.1| - 3.3e-11 42.5 0.5 6.8e-11 41.5 0.0 1.7 1 1 1 2 2 2 1 Cupin domain AraC_binding PF02311.14 gi|284165040|ref|YP_003403319.1| - 0.00094 18.8 0.0 0.0015 18.2 0.0 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain AraC_binding_2 PF14525.1 gi|284165040|ref|YP_003403319.1| - 0.0019 17.7 0.1 0.0024 17.4 0.1 1.3 1 1 0 1 1 1 1 AraC-binding-like domain DUF1637 PF07847.7 gi|284165040|ref|YP_003403319.1| - 0.023 14.0 0.0 0.023 14.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1637) Pirin PF02678.11 gi|284165040|ref|YP_003403319.1| - 0.12 12.2 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 Pirin HutD PF05962.6 gi|284165040|ref|YP_003403319.1| - 0.15 11.7 0.0 0.17 11.5 0.0 1.2 1 1 0 1 1 1 0 HutD HTH_10 PF04967.7 gi|284165041|ref|YP_003403320.1| - 3.1e-19 68.3 0.2 7.5e-19 67.0 0.0 1.8 2 0 0 2 2 2 1 HTH DNA binding domain HTH_IclR PF09339.5 gi|284165041|ref|YP_003403320.1| - 0.00036 20.0 0.9 0.0021 17.6 0.1 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|284165041|ref|YP_003403320.1| - 0.00056 19.2 0.0 0.0014 17.9 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|284165041|ref|YP_003403320.1| - 0.0016 18.0 0.2 0.014 15.0 0.0 2.4 3 0 0 3 3 3 1 MarR family HTH_AsnC-type PF13404.1 gi|284165041|ref|YP_003403320.1| - 0.0059 16.1 0.6 0.02 14.4 0.1 2.1 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain Sigma70_r4 PF04545.11 gi|284165041|ref|YP_003403320.1| - 0.016 14.4 0.0 0.071 12.4 0.0 2.2 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_20 PF12840.2 gi|284165041|ref|YP_003403320.1| - 0.017 14.8 0.2 0.048 13.4 0.1 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|284165041|ref|YP_003403320.1| - 0.019 14.8 0.0 0.042 13.7 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_Tnp_Tc3_2 PF01498.13 gi|284165041|ref|YP_003403320.1| - 0.025 14.6 0.1 14 5.7 0.0 2.8 3 0 0 3 3 3 0 Transposase Phage_CI_repr PF07022.8 gi|284165041|ref|YP_003403320.1| - 0.026 14.5 0.0 0.066 13.3 0.0 1.6 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain PuR_N PF09182.5 gi|284165041|ref|YP_003403320.1| - 0.028 14.0 0.0 0.058 13.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial purine repressor, N-terminal Sigma70_r4_2 PF08281.7 gi|284165041|ref|YP_003403320.1| - 0.035 13.5 0.5 0.13 11.7 0.1 2.2 3 0 0 3 3 3 0 Sigma-70, region 4 ALS_ss_C PF10369.4 gi|284165041|ref|YP_003403320.1| - 0.051 13.2 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 Small subunit of acetolactate synthase UPF0122 PF04297.9 gi|284165041|ref|YP_003403320.1| - 0.07 13.1 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_1 PF00126.22 gi|284165041|ref|YP_003403320.1| - 0.081 12.6 0.7 0.55 10.0 0.5 2.3 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_28 PF13518.1 gi|284165041|ref|YP_003403320.1| - 0.094 12.7 0.0 0.22 11.5 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_4 PF13613.1 gi|284165041|ref|YP_003403320.1| - 0.12 11.9 0.0 0.24 10.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_30 PF13556.1 gi|284165041|ref|YP_003403320.1| - 0.37 10.4 3.4 7.6 6.2 0.1 3.0 3 0 0 3 3 3 0 PucR C-terminal helix-turn-helix domain DUF2249 PF10006.4 gi|284165042|ref|YP_003403321.1| - 2.2e-15 55.9 1.4 2.5e-15 55.7 1.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) DUF2249 PF10006.4 gi|284165043|ref|YP_003403322.1| - 8.2e-25 86.1 1.5 9.1e-25 86.0 1.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) DUF2249 PF10006.4 gi|284165044|ref|YP_003403323.1| - 2.6e-14 52.5 0.2 3.8e-14 52.0 0.1 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) TusA PF01206.12 gi|284165044|ref|YP_003403323.1| - 0.006 16.1 0.0 0.0092 15.5 0.0 1.3 1 0 0 1 1 1 1 Sulfurtransferase TusA Abhydrolase_6 PF12697.2 gi|284165045|ref|YP_003403324.1| - 4.1e-35 121.6 7.0 5.5e-35 121.3 4.9 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|284165045|ref|YP_003403324.1| - 9.5e-19 67.8 0.1 4.6e-18 65.6 0.0 1.9 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|284165045|ref|YP_003403324.1| - 1.1e-15 57.5 0.0 3.8e-15 55.9 0.0 1.7 1 1 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|284165045|ref|YP_003403324.1| - 0.00014 21.2 0.0 0.065 12.4 0.0 2.4 2 1 0 2 2 2 2 Dienelactone hydrolase family Hydrolase_4 PF12146.3 gi|284165045|ref|YP_003403324.1| - 0.00016 21.4 0.0 0.00029 20.6 0.0 1.4 1 0 0 1 1 1 1 Putative lysophospholipase PGAP1 PF07819.8 gi|284165045|ref|YP_003403324.1| - 0.056 13.0 0.0 0.092 12.3 0.0 1.3 1 0 0 1 1 1 0 PGAP1-like protein DUF581 PF04570.9 gi|284165046|ref|YP_003403325.1| - 0.3 10.4 2.0 1.1 8.6 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF581) zf-HIT PF04438.11 gi|284165046|ref|YP_003403325.1| - 0.32 10.6 3.0 0.92 9.2 2.1 1.7 1 1 0 1 1 1 0 HIT zinc finger zf-FCS PF06467.9 gi|284165046|ref|YP_003403325.1| - 0.92 9.1 5.5 5.7 6.6 3.8 2.0 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif Glu-tRNAGln PF02686.10 gi|284165047|ref|YP_003403326.1| - 2.8e-18 65.4 1.7 4.7e-18 64.7 1.2 1.4 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit Amidase PF01425.16 gi|284165048|ref|YP_003403327.1| - 3.5e-144 480.9 0.2 4.1e-144 480.6 0.1 1.0 1 0 0 1 1 1 1 Amidase MarR PF01047.17 gi|284165050|ref|YP_003403329.1| - 0.00019 21.0 0.0 0.00025 20.6 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|284165050|ref|YP_003403329.1| - 0.0019 17.7 0.0 0.0029 17.2 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|284165050|ref|YP_003403329.1| - 0.0047 16.5 0.0 0.006 16.2 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB B-block_TFIIIC PF04182.7 gi|284165050|ref|YP_003403329.1| - 0.012 15.4 0.0 0.017 14.9 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC NRDE PF05742.7 gi|284165051|ref|YP_003403330.1| - 3e-21 75.9 0.0 2e-20 73.2 0.0 1.9 1 1 0 1 1 1 1 NRDE protein BCCT PF02028.12 gi|284165052|ref|YP_003403331.1| - 3e-113 378.6 46.0 3.4e-113 378.4 31.9 1.0 1 0 0 1 1 1 1 BCCT family transporter AMP-binding PF00501.23 gi|284165053|ref|YP_003403332.1| - 2.9e-79 266.4 0.0 3.4e-79 266.1 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|284165053|ref|YP_003403332.1| - 2e-15 57.4 1.0 1.5e-14 54.6 0.1 2.6 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain HHH_5 PF14520.1 gi|284165053|ref|YP_003403332.1| - 0.011 15.8 0.0 0.045 13.9 0.0 2.1 1 0 0 1 1 1 0 Helix-hairpin-helix domain MR_MLE PF01188.16 gi|284165054|ref|YP_003403333.1| - 2.3e-16 60.0 3.7 2.3e-16 60.0 2.5 2.3 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_C PF13378.1 gi|284165054|ref|YP_003403333.1| - 4.8e-12 45.8 2.3 1e-10 41.5 0.9 2.5 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|284165054|ref|YP_003403333.1| - 4.3e-06 26.7 0.0 1.6e-05 24.8 0.0 2.0 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain UbiA PF01040.13 gi|284165055|ref|YP_003403334.1| - 1e-43 149.4 18.5 1.3e-43 149.1 12.8 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Cohesin PF00963.13 gi|284165056|ref|YP_003403335.1| - 1.1e-08 35.0 3.4 1.6e-08 34.5 2.4 1.2 1 0 0 1 1 1 1 Cohesin domain Iron_transport PF10634.4 gi|284165057|ref|YP_003403336.1| - 4.6e-05 23.3 0.0 0.0039 17.0 0.0 2.3 2 0 0 2 2 2 2 Fe2+ transport protein TAT_signal PF10518.4 gi|284165057|ref|YP_003403336.1| - 0.017 15.0 1.1 0.033 14.1 0.7 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence TAT_signal PF10518.4 gi|284165058|ref|YP_003403337.1| - 0.0083 16.0 1.6 0.019 14.9 1.1 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence ECH PF00378.15 gi|284165059|ref|YP_003403338.1| - 2.5e-47 161.0 0.0 3e-47 160.8 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family Beta_helix PF13229.1 gi|284165060|ref|YP_003403339.1| - 1.5e-21 76.8 13.6 4.9e-19 68.6 4.0 2.7 1 1 2 3 3 3 3 Right handed beta helix region NosD PF05048.8 gi|284165060|ref|YP_003403339.1| - 2.7e-09 36.5 4.5 4.8e-06 25.9 0.2 2.6 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Pectate_lyase_3 PF12708.2 gi|284165060|ref|YP_003403339.1| - 2.7e-06 27.6 3.4 8.4e-05 22.7 2.3 2.4 1 1 0 1 1 1 1 Pectate lyase superfamily protein DnaJ PF00226.26 gi|284165061|ref|YP_003403340.1| - 1.1e-19 69.9 0.2 1.7e-19 69.3 0.1 1.3 1 0 0 1 1 1 1 DnaJ domain VIT1 PF01988.14 gi|284165061|ref|YP_003403340.1| - 0.004 16.6 0.1 0.013 15.0 0.0 1.9 2 1 0 2 2 2 1 VIT family RPT PF13446.1 gi|284165061|ref|YP_003403340.1| - 0.035 13.4 0.1 0.065 12.6 0.0 1.4 1 0 0 1 1 1 0 A repeated domain in UCH-protein CAF-1_p150 PF11600.3 gi|284165061|ref|YP_003403340.1| - 1.9 7.8 12.6 2.9 7.2 8.7 1.3 1 0 0 1 1 1 0 Chromatin assembly factor 1 complex p150 subunit, N-terminal eIF-3_zeta PF05091.7 gi|284165061|ref|YP_003403340.1| - 2.5 6.6 7.3 3 6.3 5.0 1.1 1 0 0 1 1 1 0 Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) DUF572 PF04502.8 gi|284165061|ref|YP_003403340.1| - 4.7 6.3 16.0 6.6 5.8 11.1 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF572) TPP_enzyme_N PF02776.13 gi|284165062|ref|YP_003403341.1| - 5.1e-30 104.2 0.2 1.3e-29 102.8 0.1 1.7 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|284165062|ref|YP_003403341.1| - 6e-07 29.1 0.0 1.2e-06 28.2 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Chorismate_bind PF00425.13 gi|284165063|ref|YP_003403342.1| - 1.1e-74 251.0 0.0 1.3e-74 250.7 0.0 1.1 1 0 0 1 1 1 1 chorismate binding enzyme Oxidored_molyb PF00174.14 gi|284165064|ref|YP_003403343.1| - 3.5e-44 150.1 0.0 4.4e-44 149.8 0.0 1.0 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain IclR PF01614.13 gi|284165066|ref|YP_003403345.1| - 0.031 13.9 0.0 0.038 13.6 0.0 1.1 1 0 0 1 1 1 0 Bacterial transcriptional regulator TAT_signal PF10518.4 gi|284165068|ref|YP_003403347.1| - 1.1 9.4 6.8 0.15 12.1 1.8 1.8 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence TAT_signal PF10518.4 gi|284165069|ref|YP_003403348.1| - 0.003 17.4 3.2 0.01 15.7 2.2 2.0 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Acyl-CoA_dh_2 PF08028.6 gi|284165069|ref|YP_003403348.1| - 3.2 7.9 16.3 0.1 12.8 0.5 3.1 3 0 0 3 3 3 0 Acyl-CoA dehydrogenase, C-terminal domain His_biosynth PF00977.16 gi|284165070|ref|YP_003403349.1| - 5.6e-80 267.8 0.1 6.4e-80 267.7 0.1 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.12 gi|284165070|ref|YP_003403349.1| - 4.8e-09 35.4 0.0 6.2e-06 25.2 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.10 gi|284165070|ref|YP_003403349.1| - 4.2e-06 26.1 0.6 0.00064 18.9 0.1 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase ThiG PF05690.9 gi|284165070|ref|YP_003403349.1| - 1.4e-05 24.2 0.2 0.0056 15.7 0.0 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG PcrB PF01884.12 gi|284165070|ref|YP_003403349.1| - 0.00017 20.9 0.1 0.00036 19.8 0.1 1.6 1 0 0 1 1 1 1 PcrB family DHO_dh PF01180.16 gi|284165070|ref|YP_003403349.1| - 0.0015 17.5 0.2 0.0056 15.6 0.0 1.8 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase G3P_antiterm PF04309.7 gi|284165070|ref|YP_003403349.1| - 0.0084 15.1 0.0 0.014 14.4 0.0 1.3 1 0 0 1 1 1 1 Glycerol-3-phosphate responsive antiterminator TMP-TENI PF02581.12 gi|284165070|ref|YP_003403349.1| - 0.0097 15.0 0.1 0.26 10.4 0.0 2.2 2 0 0 2 2 2 1 Thiamine monophosphate synthase/TENI Glu_synthase PF01645.12 gi|284165070|ref|YP_003403349.1| - 0.024 13.5 0.0 0.037 12.9 0.0 1.2 1 0 0 1 1 1 0 Conserved region in glutamate synthase FMN_dh PF01070.13 gi|284165070|ref|YP_003403349.1| - 0.048 12.5 0.2 0.1 11.4 0.1 1.5 1 0 0 1 1 1 0 FMN-dependent dehydrogenase IMPDH PF00478.20 gi|284165070|ref|YP_003403349.1| - 0.059 12.2 1.0 0.06 12.2 0.0 1.4 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain PEP_mutase PF13714.1 gi|284165070|ref|YP_003403349.1| - 0.11 11.7 0.6 0.92 8.6 0.0 2.4 2 2 0 2 2 2 0 Phosphoenolpyruvate phosphomutase NOB1_Zn_bind PF08772.6 gi|284165071|ref|YP_003403350.1| - 4.7e-05 23.1 1.9 0.11 12.3 0.1 2.4 2 0 0 2 2 2 2 Nin one binding (NOB1) Zn-ribbon like zinc_ribbon_2 PF13240.1 gi|284165071|ref|YP_003403350.1| - 0.0037 16.7 17.9 0.021 14.2 3.3 2.5 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|284165071|ref|YP_003403350.1| - 0.096 12.5 11.6 0.67 9.8 8.0 2.1 1 1 0 1 1 1 0 Double zinc ribbon zf-FPG_IleRS PF06827.9 gi|284165071|ref|YP_003403350.1| - 0.14 11.7 0.1 0.14 11.7 0.1 2.7 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS zf-ribbon_3 PF13248.1 gi|284165071|ref|YP_003403350.1| - 0.49 9.6 14.0 0.11 11.7 2.0 2.9 2 1 0 2 2 2 0 zinc-ribbon domain Ribosomal_L37e PF01907.14 gi|284165071|ref|YP_003403350.1| - 0.87 9.4 4.8 20 5.0 0.4 2.9 2 1 0 2 2 2 0 Ribosomal protein L37e Zn-ribbon_8 PF09723.5 gi|284165071|ref|YP_003403350.1| - 2 8.4 12.0 2 8.4 1.6 3.7 2 2 0 2 2 2 0 Zinc ribbon domain SprT-like PF10263.4 gi|284165071|ref|YP_003403350.1| - 7.4 6.2 7.5 1.4 8.5 2.2 1.8 1 1 1 2 2 2 0 SprT-like family RNA_pol_L_2 PF13656.1 gi|284165072|ref|YP_003403351.1| - 6.9e-19 67.0 0.0 8.2e-19 66.8 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|284165072|ref|YP_003403351.1| - 6e-10 38.1 0.0 8.3e-10 37.6 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Rhomboid PF01694.17 gi|284165073|ref|YP_003403352.1| - 0.00021 21.3 20.8 0.00029 20.8 10.6 3.2 2 1 0 2 2 2 1 Rhomboid family SKG6 PF08693.5 gi|284165073|ref|YP_003403352.1| - 0.0073 15.5 3.7 0.0073 15.5 2.6 5.2 6 0 0 6 6 6 1 Transmembrane alpha-helix domain DUF1129 PF06570.6 gi|284165073|ref|YP_003403352.1| - 0.64 9.2 2.0 0.69 9.1 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) ABC_tran PF00005.22 gi|284165074|ref|YP_003403353.1| - 8e-33 113.6 0.0 1.2e-32 113.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284165074|ref|YP_003403353.1| - 4e-07 30.2 0.0 0.0076 16.2 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|284165074|ref|YP_003403353.1| - 4.5e-07 29.2 0.2 8.3e-07 28.4 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|284165074|ref|YP_003403353.1| - 1e-05 24.8 0.0 5.2e-05 22.5 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain ArgK PF03308.11 gi|284165074|ref|YP_003403353.1| - 0.0029 16.4 0.1 0.0052 15.6 0.1 1.4 1 0 0 1 1 1 1 ArgK protein Mg_chelatase PF01078.16 gi|284165074|ref|YP_003403353.1| - 0.0049 16.0 0.0 0.0084 15.2 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_19 PF13245.1 gi|284165074|ref|YP_003403353.1| - 0.007 16.0 1.1 0.031 14.0 0.1 2.4 2 0 0 2 2 2 1 Part of AAA domain AAA_23 PF13476.1 gi|284165074|ref|YP_003403353.1| - 0.023 15.0 0.0 0.032 14.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|284165074|ref|YP_003403353.1| - 0.028 15.2 1.2 0.043 14.6 0.3 1.8 2 1 0 2 2 1 0 AAA domain AAA_16 PF13191.1 gi|284165074|ref|YP_003403353.1| - 0.034 14.1 3.4 0.11 12.4 2.4 2.1 1 1 0 1 1 1 0 AAA ATPase domain NTPase_1 PF03266.10 gi|284165074|ref|YP_003403353.1| - 0.049 13.3 0.1 0.4 10.3 0.0 2.1 2 0 0 2 2 2 0 NTPase T2SE PF00437.15 gi|284165074|ref|YP_003403353.1| - 0.05 12.4 0.3 0.12 11.2 0.0 1.7 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_18 PF13238.1 gi|284165074|ref|YP_003403353.1| - 0.051 13.8 0.0 0.13 12.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|284165074|ref|YP_003403353.1| - 0.059 12.9 0.9 0.28 10.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain APS_kinase PF01583.15 gi|284165074|ref|YP_003403353.1| - 0.067 12.8 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase SbcCD_C PF13558.1 gi|284165074|ref|YP_003403353.1| - 0.078 12.9 0.3 0.98 9.3 0.2 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF258 PF03193.11 gi|284165074|ref|YP_003403353.1| - 0.13 11.4 0.0 0.23 10.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MacB_PCD PF12704.2 gi|284165075|ref|YP_003403354.1| - 2.2e-12 47.0 1.4 2.3e-10 40.4 0.0 2.3 2 0 0 2 2 2 2 MacB-like periplasmic core domain FtsX PF02687.16 gi|284165075|ref|YP_003403354.1| - 2.1e-09 37.1 13.1 1.1e-08 34.8 5.7 2.1 2 0 0 2 2 2 2 FtsX-like permease family MacB_PCD PF12704.2 gi|284165076|ref|YP_003403355.1| - 4.4e-24 85.3 2.3 4.4e-24 85.3 1.6 1.9 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|284165076|ref|YP_003403355.1| - 5.4e-14 51.9 9.5 5.4e-14 51.9 6.6 2.0 2 0 0 2 2 2 1 FtsX-like permease family COX14 PF14880.1 gi|284165076|ref|YP_003403355.1| - 0.015 14.9 0.9 0.14 11.8 0.1 2.6 2 0 0 2 2 2 0 Cytochrome oxidase c assembly YjgP_YjgQ PF03739.9 gi|284165076|ref|YP_003403355.1| - 0.21 10.2 5.3 0.086 11.5 0.7 2.0 2 0 0 2 2 2 0 Predicted permease YjgP/YjgQ family Methyltransf_26 PF13659.1 gi|284165077|ref|YP_003403356.1| - 2.7e-13 49.9 0.2 5.2e-13 49.0 0.2 1.5 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|284165077|ref|YP_003403356.1| - 2.1e-10 40.2 0.6 3.2e-10 39.6 0.4 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.2 gi|284165077|ref|YP_003403356.1| - 1.9e-09 38.0 0.2 3e-09 37.4 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|284165077|ref|YP_003403356.1| - 3.5e-08 33.0 0.1 2.8e-07 30.0 0.1 2.0 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|284165077|ref|YP_003403356.1| - 1.3e-06 28.0 0.0 2.8e-06 27.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|284165077|ref|YP_003403356.1| - 4.8e-06 26.2 0.0 1.3e-05 24.8 0.0 1.7 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.7 gi|284165077|ref|YP_003403356.1| - 2.1e-05 24.9 0.0 4.4e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|284165077|ref|YP_003403356.1| - 0.00061 20.1 0.0 0.0012 19.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|284165077|ref|YP_003403356.1| - 0.0044 16.4 0.0 0.006 15.9 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_3 PF01596.12 gi|284165077|ref|YP_003403356.1| - 0.045 12.8 0.0 0.06 12.3 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_12 PF08242.7 gi|284165077|ref|YP_003403356.1| - 0.064 13.7 0.0 0.13 12.7 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Ubie_methyltran PF01209.13 gi|284165077|ref|YP_003403356.1| - 0.077 12.0 0.0 0.12 11.4 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|284165077|ref|YP_003403356.1| - 0.081 12.6 0.0 0.097 12.3 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain zf-TFIIB PF13453.1 gi|284165079|ref|YP_003403358.1| - 4.1e-06 25.8 2.2 5.8e-06 25.4 1.5 1.2 1 0 0 1 1 1 1 Transcription factor zinc-finger zf-FPG_IleRS PF06827.9 gi|284165079|ref|YP_003403358.1| - 3.3e-05 23.4 1.0 5.6e-05 22.6 0.7 1.3 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS UPF0547 PF10571.4 gi|284165079|ref|YP_003403358.1| - 0.00048 19.7 2.2 0.0011 18.6 1.6 1.6 1 1 0 1 1 1 1 Uncharacterised protein family UPF0547 zf-ISL3 PF14690.1 gi|284165079|ref|YP_003403358.1| - 0.0019 18.1 0.2 0.039 13.9 0.0 2.1 2 0 0 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DZR PF12773.2 gi|284165079|ref|YP_003403358.1| - 0.0065 16.2 0.6 0.01 15.6 0.4 1.4 1 1 0 1 1 1 1 Double zinc ribbon DUF2743 PF10899.3 gi|284165079|ref|YP_003403358.1| - 0.041 13.2 0.0 0.046 13.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2743) Lar_restr_allev PF14354.1 gi|284165079|ref|YP_003403358.1| - 0.046 14.0 2.5 0.51 10.6 1.7 2.0 1 1 0 1 1 1 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.5 gi|284165079|ref|YP_003403358.1| - 0.051 13.5 3.6 0.24 11.3 2.5 2.0 1 1 0 1 1 1 0 Zinc ribbon domain zf-IS66 PF13005.2 gi|284165079|ref|YP_003403358.1| - 0.053 13.5 5.6 0.38 10.7 0.1 2.3 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 ASCH PF04266.9 gi|284165079|ref|YP_003403358.1| - 0.068 13.5 0.0 0.077 13.3 0.0 1.1 1 0 0 1 1 1 0 ASCH domain OrfB_Zn_ribbon PF07282.6 gi|284165079|ref|YP_003403358.1| - 0.086 12.5 0.2 0.11 12.1 0.1 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.1 gi|284165079|ref|YP_003403358.1| - 0.11 11.9 3.6 0.54 9.8 0.0 2.4 3 0 0 3 3 3 0 zinc-ribbon domain zf-C4_Topoisom PF01396.14 gi|284165079|ref|YP_003403358.1| - 0.12 11.9 1.4 4.5 6.8 0.0 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-ribbon_3 PF13248.1 gi|284165079|ref|YP_003403358.1| - 0.14 11.3 5.7 0.39 9.9 0.4 2.1 1 1 1 2 2 2 0 zinc-ribbon domain RNHCP PF12647.2 gi|284165079|ref|YP_003403358.1| - 0.15 11.9 0.3 0.15 11.9 0.2 1.1 1 0 0 1 1 1 0 RNHCP domain Zn_Tnp_IS1 PF03811.8 gi|284165079|ref|YP_003403358.1| - 0.31 10.5 1.8 6.8 6.2 0.1 2.2 2 0 0 2 2 2 0 InsA N-terminal domain zinc-ribbons_6 PF07191.7 gi|284165079|ref|YP_003403358.1| - 0.33 10.7 1.7 0.51 10.1 1.2 1.4 1 1 0 1 1 1 0 zinc-ribbons zf-RING_3 PF14369.1 gi|284165079|ref|YP_003403358.1| - 0.36 10.8 6.0 1.3 9.0 0.4 2.2 1 1 1 2 2 2 0 zinc-finger Zn_Tnp_IS1595 PF12760.2 gi|284165079|ref|YP_003403358.1| - 0.42 10.4 4.9 1.8 8.4 0.2 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|284165079|ref|YP_003403358.1| - 3 7.2 5.1 17 4.8 0.6 2.2 1 1 1 2 2 2 0 TFIIB zinc-binding Actin PF00022.14 gi|284165080|ref|YP_003403359.1| - 0.0026 16.2 0.0 0.55 8.6 0.0 2.2 2 0 0 2 2 2 2 Actin SpoIIIAH PF12685.2 gi|284165081|ref|YP_003403360.1| - 0.025 14.1 2.1 0.037 13.5 1.4 1.2 1 0 0 1 1 1 0 SpoIIIAH-like protein Aegerolysin PF06355.8 gi|284165081|ref|YP_003403360.1| - 0.064 13.1 0.2 0.14 12.0 0.1 1.5 1 1 0 1 1 1 0 Aegerolysin DUF2207 PF09972.4 gi|284165081|ref|YP_003403360.1| - 0.13 10.8 1.0 0.2 10.2 0.3 1.5 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) Diphthamide_syn PF01866.12 gi|284165082|ref|YP_003403361.1| - 8.9e-94 314.1 0.0 1.1e-93 313.9 0.0 1.1 1 0 0 1 1 1 1 Putative diphthamide synthesis protein Hydrolase_4 PF12146.3 gi|284165082|ref|YP_003403361.1| - 0.03 14.1 0.0 0.67 9.8 0.0 2.3 2 0 0 2 2 2 0 Putative lysophospholipase DUF3529 PF12046.3 gi|284165082|ref|YP_003403361.1| - 0.063 12.2 0.0 0.1 11.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3529) HTH_20 PF12840.2 gi|284165083|ref|YP_003403362.1| - 0.00094 18.9 4.5 0.94 9.3 1.2 3.2 2 1 0 2 2 2 2 Helix-turn-helix domain HTH_12 PF08461.5 gi|284165083|ref|YP_003403362.1| - 0.0026 17.4 0.1 0.0063 16.2 0.0 1.6 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain Lactamase_B_2 PF12706.2 gi|284165084|ref|YP_003403363.1| - 1.6e-18 66.9 0.3 2.2e-18 66.5 0.2 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|284165084|ref|YP_003403363.1| - 6.1e-14 52.0 0.1 8.5e-14 51.5 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|284165084|ref|YP_003403363.1| - 0.00012 21.8 13.2 0.00035 20.2 9.1 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily DUF3038 PF11237.3 gi|284165084|ref|YP_003403363.1| - 0.07 12.9 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3038) IncA PF04156.9 gi|284165085|ref|YP_003403364.1| - 7.7e-08 32.1 5.0 2.6e-07 30.4 3.5 1.8 1 1 0 1 1 1 1 IncA protein Reo_sigmaC PF04582.7 gi|284165085|ref|YP_003403364.1| - 1.5e-07 30.9 2.7 2.4e-07 30.2 1.9 1.4 1 0 0 1 1 1 1 Reovirus sigma C capsid protein AAA_13 PF13166.1 gi|284165085|ref|YP_003403364.1| - 1.6e-06 26.9 0.3 2.6e-06 26.2 0.2 1.2 1 0 0 1 1 1 1 AAA domain CENP-F_leu_zip PF10473.4 gi|284165085|ref|YP_003403364.1| - 2.7e-06 27.3 5.5 3.7e-06 26.8 2.8 2.0 1 1 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 FlaC_arch PF05377.6 gi|284165085|ref|YP_003403364.1| - 1.7e-05 24.6 8.6 0.0085 15.9 2.0 3.3 1 1 0 2 2 2 2 Flagella accessory protein C (FlaC) Laminin_II PF06009.7 gi|284165085|ref|YP_003403364.1| - 2.3e-05 24.1 3.6 9.2e-05 22.2 1.9 2.2 1 1 1 2 2 2 1 Laminin Domain II Spc7 PF08317.6 gi|284165085|ref|YP_003403364.1| - 2.6e-05 23.0 2.4 0.0002 20.1 0.8 2.1 1 1 1 2 2 2 2 Spc7 kinetochore protein PspA_IM30 PF04012.7 gi|284165085|ref|YP_003403364.1| - 2.8e-05 23.6 1.5 7.8e-05 22.1 1.0 1.9 1 1 0 1 1 1 1 PspA/IM30 family NPV_P10 PF05531.7 gi|284165085|ref|YP_003403364.1| - 3.9e-05 23.8 18.6 0.54 10.5 9.3 4.4 1 1 2 3 3 3 2 Nucleopolyhedrovirus P10 protein TBPIP PF07106.8 gi|284165085|ref|YP_003403364.1| - 4.1e-05 23.2 2.7 0.0076 15.8 0.2 2.3 1 1 1 2 2 2 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) MCPsignal PF00015.16 gi|284165085|ref|YP_003403364.1| - 6.5e-05 22.5 1.8 0.00016 21.2 1.2 1.8 1 0 0 1 1 1 1 Methyl-accepting chemotaxis protein (MCP) signalling domain LPP PF04728.8 gi|284165085|ref|YP_003403364.1| - 0.00012 21.7 20.4 0.52 10.1 1.2 5.2 2 1 3 5 5 5 2 Lipoprotein leucine-zipper Baculo_PEP_C PF04513.7 gi|284165085|ref|YP_003403364.1| - 0.00013 21.8 2.6 0.0023 17.7 1.8 2.3 1 1 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus COG2 PF06148.6 gi|284165085|ref|YP_003403364.1| - 0.00014 21.7 3.9 0.054 13.3 0.1 2.7 1 1 1 2 2 2 2 COG (conserved oligomeric Golgi) complex component, COG2 Mod_r PF07200.8 gi|284165085|ref|YP_003403364.1| - 0.00015 21.6 1.4 0.0011 18.9 0.4 2.6 1 1 1 2 2 2 1 Modifier of rudimentary (Mod(r)) protein DUF1664 PF07889.7 gi|284165085|ref|YP_003403364.1| - 0.00019 21.1 9.3 0.0023 17.7 1.8 2.7 1 1 1 2 2 2 2 Protein of unknown function (DUF1664) ATG16 PF08614.6 gi|284165085|ref|YP_003403364.1| - 0.0002 21.2 4.5 0.0059 16.4 1.2 2.1 1 1 0 1 1 1 1 Autophagy protein 16 (ATG16) GAS PF13851.1 gi|284165085|ref|YP_003403364.1| - 0.00023 20.4 0.4 0.00048 19.3 0.2 1.6 1 1 1 2 2 2 2 Growth-arrest specific micro-tubule binding Nsp1_C PF05064.8 gi|284165085|ref|YP_003403364.1| - 0.0003 20.4 5.3 0.00048 19.7 2.2 2.3 1 1 1 2 2 2 2 Nsp1-like C-terminal region ADIP PF11559.3 gi|284165085|ref|YP_003403364.1| - 0.0006 19.7 0.0 1.2 9.0 0.0 2.3 1 1 1 2 2 2 1 Afadin- and alpha -actinin-Binding Laminin_I PF06008.9 gi|284165085|ref|YP_003403364.1| - 0.00072 18.9 1.3 0.0075 15.6 0.1 1.9 1 1 0 1 1 1 1 Laminin Domain I APG6 PF04111.7 gi|284165085|ref|YP_003403364.1| - 0.00077 18.5 4.9 0.003 16.6 3.4 2.0 1 1 0 1 1 1 1 Autophagy protein Apg6 TMF_DNA_bd PF12329.3 gi|284165085|ref|YP_003403364.1| - 0.0011 18.7 2.4 0.13 12.0 0.3 3.3 1 1 2 3 3 2 1 TATA element modulatory factor 1 DNA binding DUF1978 PF09321.5 gi|284165085|ref|YP_003403364.1| - 0.0012 18.3 5.6 0.021 14.2 0.9 2.8 1 1 2 3 3 3 1 Domain of unknown function (DUF1978) DUF4201 PF13870.1 gi|284165085|ref|YP_003403364.1| - 0.0012 18.2 0.0 0.0019 17.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4201) DUF812 PF05667.6 gi|284165085|ref|YP_003403364.1| - 0.0015 17.1 1.9 0.0026 16.3 1.3 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF812) Prefoldin_2 PF01920.15 gi|284165085|ref|YP_003403364.1| - 0.0015 18.2 4.1 0.12 12.1 0.1 3.1 1 1 0 2 2 2 1 Prefoldin subunit DUF2968 PF11180.3 gi|284165085|ref|YP_003403364.1| - 0.0027 17.1 0.3 0.13 11.6 0.1 2.5 1 1 1 2 2 2 1 Protein of unknown function (DUF2968) Filament PF00038.16 gi|284165085|ref|YP_003403364.1| - 0.0032 16.9 6.1 0.034 13.6 3.7 2.2 1 1 1 2 2 2 2 Intermediate filament protein DUF3552 PF12072.3 gi|284165085|ref|YP_003403364.1| - 0.0045 16.2 2.0 0.0074 15.5 0.6 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF3552) Spectrin PF00435.16 gi|284165085|ref|YP_003403364.1| - 0.0053 17.0 6.0 0.29 11.4 0.7 2.8 1 1 1 2 2 2 2 Spectrin repeat ERM PF00769.14 gi|284165085|ref|YP_003403364.1| - 0.0063 16.0 0.1 0.0063 16.0 0.0 3.2 3 1 0 3 3 1 1 Ezrin/radixin/moesin family SlyX PF04102.7 gi|284165085|ref|YP_003403364.1| - 0.0063 16.8 6.7 1.1 9.7 0.8 3.0 1 1 1 2 2 2 1 SlyX DUF972 PF06156.8 gi|284165085|ref|YP_003403364.1| - 0.0079 16.5 1.6 0.77 10.1 0.2 3.0 1 1 1 2 2 2 1 Protein of unknown function (DUF972) BLOC1_2 PF10046.4 gi|284165085|ref|YP_003403364.1| - 0.01 15.9 4.7 0.42 10.7 0.1 3.0 1 1 2 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF724 PF05266.9 gi|284165085|ref|YP_003403364.1| - 0.012 15.2 0.2 0.025 14.1 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF724) Lectin_N PF03954.9 gi|284165085|ref|YP_003403364.1| - 0.013 14.9 2.4 0.061 12.7 1.5 2.2 1 1 0 1 1 1 0 Hepatic lectin, N-terminal domain DUF2730 PF10805.3 gi|284165085|ref|YP_003403364.1| - 0.015 15.0 3.8 1.1 9.0 2.4 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2730) EzrA PF06160.7 gi|284165085|ref|YP_003403364.1| - 0.017 13.3 7.0 0.25 9.4 4.4 1.8 1 1 0 1 1 1 0 Septation ring formation regulator, EzrA DivIC PF04977.10 gi|284165085|ref|YP_003403364.1| - 0.02 14.3 5.8 0.5 9.8 0.2 3.3 1 1 2 3 3 3 0 Septum formation initiator V_ATPase_I PF01496.14 gi|284165085|ref|YP_003403364.1| - 0.02 12.7 1.9 0.029 12.2 1.0 1.4 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family Fib_alpha PF08702.5 gi|284165085|ref|YP_003403364.1| - 0.023 14.8 0.2 0.062 13.4 0.1 1.8 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family RmuC PF02646.11 gi|284165085|ref|YP_003403364.1| - 0.025 13.4 0.0 0.09 11.6 0.0 1.8 1 1 1 2 2 2 0 RmuC family TPR_MLP1_2 PF07926.7 gi|284165085|ref|YP_003403364.1| - 0.027 14.1 0.8 0.12 12.1 0.6 2.1 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein Seryl_tRNA_N PF02403.17 gi|284165085|ref|YP_003403364.1| - 0.029 14.3 5.2 2.7 8.0 0.2 3.3 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF3450 PF11932.3 gi|284165085|ref|YP_003403364.1| - 0.029 13.6 1.1 0.076 12.2 0.5 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3450) DUF948 PF06103.6 gi|284165085|ref|YP_003403364.1| - 0.031 14.1 9.0 0.21 11.4 4.1 2.6 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) FH2 PF02181.18 gi|284165085|ref|YP_003403364.1| - 0.032 13.1 3.0 0.18 10.6 2.1 2.0 1 1 0 1 1 1 0 Formin Homology 2 Domain DUF4200 PF13863.1 gi|284165085|ref|YP_003403364.1| - 0.033 14.1 1.4 3.9 7.4 0.1 3.6 1 1 2 3 3 3 0 Domain of unknown function (DUF4200) Transposase_22 PF02994.9 gi|284165085|ref|YP_003403364.1| - 0.033 12.6 0.9 0.063 11.7 0.6 1.5 1 0 0 1 1 1 0 L1 transposable element MscS_porin PF12795.2 gi|284165085|ref|YP_003403364.1| - 0.043 13.1 0.0 0.082 12.2 0.0 1.4 1 0 0 1 1 1 0 Mechanosensitive ion channel porin domain DUF2353 PF09789.4 gi|284165085|ref|YP_003403364.1| - 0.047 12.9 4.8 0.26 10.4 3.4 1.9 1 1 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) Syntaxin PF00804.20 gi|284165085|ref|YP_003403364.1| - 0.049 13.8 2.6 0.58 10.3 0.4 2.7 1 1 1 2 2 2 0 Syntaxin Hemagglutinin PF00509.13 gi|284165085|ref|YP_003403364.1| - 0.051 11.7 10.0 0.25 9.4 0.2 2.3 1 1 1 2 2 2 0 Haemagglutinin HsbA PF12296.3 gi|284165085|ref|YP_003403364.1| - 0.054 13.3 2.4 0.11 12.3 0.8 2.2 2 0 0 2 2 1 0 Hydrophobic surface binding protein A Bacillus_HBL PF05791.6 gi|284165085|ref|YP_003403364.1| - 0.097 12.0 1.3 0.58 9.4 0.9 2.0 1 1 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) DUF4618 PF15397.1 gi|284165085|ref|YP_003403364.1| - 0.099 11.9 0.5 11 5.2 0.0 2.6 2 1 1 3 3 2 0 Domain of unknown function (DUF4618) CorA PF01544.13 gi|284165085|ref|YP_003403364.1| - 0.1 11.6 5.8 0.21 10.5 4.0 1.5 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF16 PF01519.11 gi|284165085|ref|YP_003403364.1| - 0.12 12.5 3.0 0.4 10.9 1.4 2.2 1 1 1 2 2 2 0 Protein of unknown function DUF16 AATF-Che1 PF13339.1 gi|284165085|ref|YP_003403364.1| - 0.14 12.3 0.7 0.99 9.5 0.2 2.4 1 1 1 2 2 2 0 Apoptosis antagonizing transcription factor DUF759 PF05537.6 gi|284165085|ref|YP_003403364.1| - 0.14 10.9 1.1 0.22 10.2 0.8 1.2 1 0 0 1 1 1 0 Borrelia burgdorferi protein of unknown function (DUF759) Cortex-I_coil PF09304.5 gi|284165085|ref|YP_003403364.1| - 0.15 12.1 5.6 1.3 9.1 0.2 3.0 1 1 0 2 2 2 0 Cortexillin I, coiled coil Nup54 PF13874.1 gi|284165085|ref|YP_003403364.1| - 0.16 11.6 0.0 0.65 9.6 0.0 2.0 1 1 1 2 2 1 0 Nucleoporin complex subunit 54 Atg14 PF10186.4 gi|284165085|ref|YP_003403364.1| - 0.27 10.1 0.0 0.45 9.4 0.0 1.3 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Prominin PF05478.6 gi|284165085|ref|YP_003403364.1| - 0.28 8.6 0.3 1.7 6.0 0.1 1.9 1 1 1 2 2 2 0 Prominin PTRF_SDPR PF15237.1 gi|284165085|ref|YP_003403364.1| - 0.33 10.3 0.0 0.33 10.3 0.0 3.7 4 1 1 5 5 1 0 PTRF/SDPR family DUF677 PF05055.7 gi|284165085|ref|YP_003403364.1| - 0.37 9.3 8.5 0.26 9.9 3.9 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF677) DivIVA PF05103.8 gi|284165085|ref|YP_003403364.1| - 0.48 10.4 9.2 4.3 7.3 0.8 3.3 1 1 2 3 3 3 0 DivIVA protein Syntaxin-6_N PF09177.6 gi|284165085|ref|YP_003403364.1| - 0.6 10.5 10.0 3.5e+02 1.6 6.9 3.7 1 1 0 1 1 1 0 Syntaxin 6, N-terminal DUF4559 PF15112.1 gi|284165085|ref|YP_003403364.1| - 0.92 8.6 3.7 1.8 7.6 2.5 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4559) XhlA PF10779.4 gi|284165085|ref|YP_003403364.1| - 1.9 8.4 13.8 0.28 11.1 1.1 3.4 2 1 2 4 4 3 0 Haemolysin XhlA Macoilin PF09726.4 gi|284165085|ref|YP_003403364.1| - 2 6.6 3.7 3.1 5.9 2.5 1.3 1 0 0 1 1 1 0 Transmembrane protein DUF1515 PF07439.6 gi|284165085|ref|YP_003403364.1| - 2.3 8.0 11.0 0.86 9.4 1.7 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1515) TMF_TATA_bd PF12325.3 gi|284165085|ref|YP_003403364.1| - 2.4 7.9 19.4 0.42 10.3 7.4 3.3 2 1 0 2 2 1 0 TATA element modulatory factor 1 TATA binding zf-C4H2 PF10146.4 gi|284165085|ref|YP_003403364.1| - 3.5 7.5 5.8 7.6 6.4 3.0 2.0 1 1 0 1 1 1 0 Zinc finger-containing protein Vps53_N PF04100.7 gi|284165085|ref|YP_003403364.1| - 4.1 6.0 6.4 5.6 5.6 0.4 2.0 1 1 1 2 2 2 0 Vps53-like, N-terminal DUF4164 PF13747.1 gi|284165085|ref|YP_003403364.1| - 4.9 7.3 17.2 0.54 10.4 3.1 3.3 3 0 0 3 3 2 0 Domain of unknown function (DUF4164) SNARE PF05739.14 gi|284165085|ref|YP_003403364.1| - 7.3 6.3 16.7 0.2 11.3 1.9 3.8 2 1 0 3 3 2 0 SNARE domain U-box PF04564.10 gi|284165086|ref|YP_003403365.1| - 0.0096 15.8 0.0 0.022 14.7 0.0 1.5 1 0 0 1 1 1 1 U-box domain Phage_integrase PF00589.17 gi|284165087|ref|YP_003403366.1| - 4.3e-16 59.0 0.0 8.2e-16 58.1 0.0 1.5 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|284165087|ref|YP_003403366.1| - 2.6e-08 33.9 0.3 1e-07 32.0 0.2 2.1 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|284165087|ref|YP_003403366.1| - 1.5e-05 25.1 0.3 3.2e-05 24.1 0.2 1.5 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain RHH_1 PF01402.16 gi|284165088|ref|YP_003403367.1| - 0.095 12.6 0.6 0.37 10.7 0.0 2.1 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family zf-C2H2_6 PF13912.1 gi|284165089|ref|YP_003403368.1| - 2.8e-05 23.8 8.0 0.0015 18.3 0.9 2.7 3 0 0 3 3 3 2 C2H2-type zinc finger zf-C2HC_2 PF13913.1 gi|284165089|ref|YP_003403368.1| - 0.0071 15.9 3.2 0.36 10.5 0.3 2.4 2 0 0 2 2 2 1 zinc-finger of a C2HC-type FYVE PF01363.16 gi|284165089|ref|YP_003403368.1| - 0.0075 16.1 2.7 0.0082 16.0 1.9 1.2 1 0 0 1 1 1 1 FYVE zinc finger zf-C2H2 PF00096.21 gi|284165089|ref|YP_003403368.1| - 0.021 15.1 10.5 0.34 11.3 1.3 3.2 3 0 0 3 3 3 0 Zinc finger, C2H2 type GATA PF00320.22 gi|284165089|ref|YP_003403368.1| - 0.03 13.6 2.8 0.19 11.0 1.9 2.1 1 1 0 1 1 1 0 GATA zinc finger Elf1 PF05129.8 gi|284165089|ref|YP_003403368.1| - 0.062 13.0 3.5 0.25 11.0 2.4 1.9 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like zf-H2C2_2 PF13465.1 gi|284165089|ref|YP_003403368.1| - 0.2 12.0 5.1 8.6 6.8 0.1 3.3 3 1 0 3 3 3 0 Zinc-finger double domain HNH PF01844.18 gi|284165089|ref|YP_003403368.1| - 0.22 11.4 2.6 4.6 7.2 0.1 2.4 2 1 0 2 2 2 0 HNH endonuclease Prok-RING_1 PF14446.1 gi|284165089|ref|YP_003403368.1| - 0.46 10.2 5.0 2 8.2 1.2 2.7 2 1 0 2 2 2 0 Prokaryotic RING finger family 1 zf-CHY PF05495.7 gi|284165089|ref|YP_003403368.1| - 0.8 9.9 6.0 1.2 9.3 4.2 1.3 1 0 0 1 1 1 0 CHY zinc finger C1_4 PF07975.7 gi|284165089|ref|YP_003403368.1| - 0.8 9.7 4.1 11 6.1 0.2 2.3 2 0 0 2 2 2 0 TFIIH C1-like domain zf-C2H2_4 PF13894.1 gi|284165089|ref|YP_003403368.1| - 1.4 9.4 9.9 4.5 7.8 2.0 2.8 2 1 0 2 2 2 0 C2H2-type zinc finger HypA PF01155.14 gi|284165089|ref|YP_003403368.1| - 2.7 7.7 6.8 3.5 7.3 1.2 2.0 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family zf-C3HC4_3 PF13920.1 gi|284165089|ref|YP_003403368.1| - 3.4 7.4 5.6 18 5.1 3.9 2.0 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) A2L_zn_ribbon PF08792.5 gi|284165089|ref|YP_003403368.1| - 3.5 7.1 8.7 7.8 6.0 0.4 3.2 3 0 0 3 3 3 0 A2L zinc ribbon domain DZR PF12773.2 gi|284165089|ref|YP_003403368.1| - 3.6 7.4 6.7 17 5.2 4.7 2.1 1 1 0 1 1 1 0 Double zinc ribbon zf-HIT PF04438.11 gi|284165089|ref|YP_003403368.1| - 5.3 6.7 8.2 9.1 6.0 0.1 3.1 3 1 0 3 3 3 0 HIT zinc finger DUF21 PF01595.15 gi|284165090|ref|YP_003403369.1| - 3.6e-32 111.1 0.3 5e-32 110.6 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF21 CBS PF00571.23 gi|284165090|ref|YP_003403369.1| - 2.9e-16 58.9 0.1 4e-11 42.5 0.0 2.4 2 0 0 2 2 2 2 CBS domain DUF512 PF04459.7 gi|284165090|ref|YP_003403369.1| - 0.0077 15.3 0.8 0.16 10.9 0.0 2.7 3 0 0 3 3 3 1 Protein of unknown function (DUF512) Lyase_1 PF00206.15 gi|284165091|ref|YP_003403370.1| - 9.9e-110 366.5 0.2 1.4e-109 366.1 0.1 1.2 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.4 gi|284165091|ref|YP_003403370.1| - 3e-23 81.6 1.3 1.1e-22 79.8 0.1 2.5 2 0 0 2 2 2 1 Fumarase C C-terminus Trm56 PF01994.11 gi|284165091|ref|YP_003403370.1| - 0.034 13.8 0.0 0.41 10.4 0.0 2.3 2 0 0 2 2 2 0 tRNA ribose 2'-O-methyltransferase, aTrm56 SBP_bac_8 PF13416.1 gi|284165092|ref|YP_003403371.1| - 2.2e-19 70.2 4.4 2.2e-19 70.2 3.1 1.4 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|284165092|ref|YP_003403371.1| - 8.2e-10 38.9 4.0 2e-09 37.6 2.8 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.17 gi|284165093|ref|YP_003403372.1| - 5.2e-20 71.7 13.8 5.2e-20 71.7 9.6 2.2 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component NfeD PF01957.13 gi|284165093|ref|YP_003403372.1| - 9.7 6.3 9.2 1.3 9.1 2.1 2.6 2 1 1 3 3 3 0 NfeD-like C-terminal, partner-binding BPD_transp_1 PF00528.17 gi|284165094|ref|YP_003403373.1| - 2.8e-16 59.5 17.7 2.8e-16 59.5 12.3 2.1 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|284165095|ref|YP_003403374.1| - 2.4e-33 115.3 0.0 4.3e-33 114.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|284165095|ref|YP_003403374.1| - 3.6e-10 39.6 1.9 1e-09 38.2 0.6 2.3 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.1 gi|284165095|ref|YP_003403374.1| - 3.9e-08 33.6 0.0 0.0077 16.2 0.0 2.2 2 0 0 2 2 2 2 AAA domain TOBE PF03459.12 gi|284165095|ref|YP_003403374.1| - 1.6e-07 31.3 0.8 6.3e-07 29.4 0.6 2.1 1 0 0 1 1 1 1 TOBE domain SMC_N PF02463.14 gi|284165095|ref|YP_003403374.1| - 0.00013 21.2 0.3 0.00083 18.6 0.2 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|284165095|ref|YP_003403374.1| - 0.00079 18.6 0.0 0.0016 17.6 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|284165095|ref|YP_003403374.1| - 0.0015 18.7 0.0 0.0051 16.9 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|284165095|ref|YP_003403374.1| - 0.003 17.5 0.0 0.015 15.3 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain Rad17 PF03215.10 gi|284165095|ref|YP_003403374.1| - 0.0039 15.9 0.0 0.0056 15.4 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_15 PF13175.1 gi|284165095|ref|YP_003403374.1| - 0.0044 16.1 0.0 0.12 11.3 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|284165095|ref|YP_003403374.1| - 0.0056 16.1 0.0 0.013 15.0 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|284165095|ref|YP_003403374.1| - 0.0082 16.0 0.1 0.018 14.9 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|284165095|ref|YP_003403374.1| - 0.0091 16.1 0.0 0.056 13.6 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|284165095|ref|YP_003403374.1| - 0.012 15.9 1.1 0.08 13.2 0.8 2.1 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|284165095|ref|YP_003403374.1| - 0.014 14.7 0.1 0.19 11.0 0.0 2.6 3 0 0 3 3 3 0 AAA domain AAA_17 PF13207.1 gi|284165095|ref|YP_003403374.1| - 0.018 15.8 0.1 0.076 13.8 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|284165095|ref|YP_003403374.1| - 0.031 13.7 0.2 0.048 13.0 0.1 1.6 1 1 0 1 1 1 0 AAA-like domain Pyr_redox PF00070.22 gi|284165095|ref|YP_003403374.1| - 0.041 14.2 0.2 1.7 9.1 0.0 2.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase AAA_14 PF13173.1 gi|284165095|ref|YP_003403374.1| - 0.049 13.5 0.0 0.19 11.6 0.0 2.0 3 0 0 3 3 2 0 AAA domain PRC PF05239.11 gi|284165095|ref|YP_003403374.1| - 0.065 13.1 3.0 0.057 13.2 0.7 2.0 2 0 0 2 2 2 0 PRC-barrel domain RNA_helicase PF00910.17 gi|284165095|ref|YP_003403374.1| - 0.088 12.9 0.0 0.58 10.3 0.0 2.5 2 0 0 2 2 2 0 RNA helicase NACHT PF05729.7 gi|284165095|ref|YP_003403374.1| - 0.11 12.1 0.2 0.36 10.4 0.0 1.9 2 0 0 2 2 2 0 NACHT domain AAA_5 PF07728.9 gi|284165095|ref|YP_003403374.1| - 0.17 11.5 1.0 0.4 10.3 0.1 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) DUF4013 PF13197.1 gi|284165096|ref|YP_003403375.1| - 1.5e-14 53.7 13.1 2.5e-14 52.9 9.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF4013) bPH_2 PF03703.9 gi|284165097|ref|YP_003403376.1| - 2.4e-55 184.5 5.2 3.5e-21 75.0 0.3 3.2 3 0 0 3 3 3 3 Bacterial PH domain bPH_4 PF06713.6 gi|284165097|ref|YP_003403376.1| - 2.5e-05 24.0 0.0 0.061 13.1 0.0 3.2 3 0 0 3 3 3 2 Bacterial PH domain bPH_3 PF14470.1 gi|284165097|ref|YP_003403376.1| - 0.014 15.6 0.0 1.1 9.5 0.0 2.6 3 0 0 3 3 3 0 Bacterial PH domain bPH_2 PF03703.9 gi|284165098|ref|YP_003403377.1| - 6e-15 55.0 0.0 1.2e-14 54.0 0.0 1.4 2 0 0 2 2 2 1 Bacterial PH domain bPH_2 PF03703.9 gi|284165099|ref|YP_003403378.1| - 2e-52 175.1 2.0 4.8e-20 71.3 0.0 3.3 3 0 0 3 3 3 3 Bacterial PH domain bPH_4 PF06713.6 gi|284165099|ref|YP_003403378.1| - 1.4e-06 28.0 0.0 0.011 15.5 0.0 3.2 3 0 0 3 3 3 2 Bacterial PH domain bPH_3 PF14470.1 gi|284165099|ref|YP_003403378.1| - 0.0012 19.0 0.0 1.2 9.4 0.0 2.7 3 0 0 3 3 3 2 Bacterial PH domain bPH_2 PF03703.9 gi|284165100|ref|YP_003403379.1| - 3.7e-14 52.4 0.1 5.3e-14 51.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial PH domain HERV-K_env_2 PF13804.1 gi|284165100|ref|YP_003403379.1| - 0.1 12.1 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 Retro-transcribing viruses envelope glycoprotein BolA PF01722.13 gi|284165101|ref|YP_003403380.1| - 8.8e-21 73.6 0.1 1e-20 73.4 0.1 1.0 1 0 0 1 1 1 1 BolA-like protein Patatin PF01734.17 gi|284165103|ref|YP_003403382.1| - 1.4e-17 64.3 6.9 9.8e-17 61.5 4.8 2.1 1 1 0 1 1 1 1 Patatin-like phospholipase tRNA-synt_1e PF01406.14 gi|284165104|ref|YP_003403383.1| - 8.8e-105 350.1 0.1 3.2e-103 344.9 0.0 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain DALR_2 PF09190.6 gi|284165104|ref|YP_003403383.1| - 2.4e-12 46.9 1.9 6.3e-12 45.5 0.4 2.1 1 1 1 2 2 2 1 DALR domain tRNA-synt_1g PF09334.6 gi|284165104|ref|YP_003403383.1| - 3.9e-11 42.2 0.1 0.00017 20.4 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1f PF01921.13 gi|284165104|ref|YP_003403383.1| - 5.9e-10 38.3 0.3 6.8e-09 34.8 0.2 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1 PF00133.17 gi|284165104|ref|YP_003403383.1| - 7.7e-05 20.8 0.1 0.00051 18.1 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1d PF00750.14 gi|284165104|ref|YP_003403383.1| - 0.00014 20.8 0.1 0.025 13.3 0.0 3.0 3 0 0 3 3 3 1 tRNA synthetases class I (R) UVR PF02151.14 gi|284165104|ref|YP_003403383.1| - 0.057 12.9 0.7 0.16 11.4 0.1 2.0 2 0 0 2 2 2 0 UvrB/uvrC motif FTO_CTD PF12934.2 gi|284165104|ref|YP_003403383.1| - 0.094 12.2 0.1 0.25 10.8 0.1 1.6 1 1 0 1 1 1 0 FTO C-terminal domain UCR_Fe-S_N PF10399.4 gi|284165105|ref|YP_003403384.1| - 0.0094 15.1 3.7 0.018 14.2 2.5 1.4 1 0 0 1 1 1 1 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TAT_signal PF10518.4 gi|284165105|ref|YP_003403384.1| - 0.012 15.5 4.4 0.028 14.3 3.0 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF1119 PF06550.6 gi|284165106|ref|YP_003403385.1| - 4e-83 278.8 26.2 2.8e-82 276.0 18.2 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF1119) Peptidase_A22B PF04258.8 gi|284165106|ref|YP_003403385.1| - 0.00079 18.9 14.9 0.0018 17.7 0.8 3.1 2 1 1 3 3 3 2 Signal peptide peptidase Presenilin PF01080.12 gi|284165106|ref|YP_003403385.1| - 0.003 16.4 7.4 0.56 8.9 5.1 2.4 2 1 0 2 2 2 2 Presenilin UPF0233 PF06781.7 gi|284165106|ref|YP_003403385.1| - 7.8 6.1 7.4 8 6.1 3.3 2.3 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0233) Gar1 PF04410.9 gi|284165107|ref|YP_003403386.1| - 0.001 18.5 0.0 0.001 18.5 0.0 1.2 1 1 0 1 1 1 1 Gar1/Naf1 RNA binding region SRP19 PF01922.12 gi|284165108|ref|YP_003403387.1| - 1e-28 99.7 0.1 1.1e-28 99.6 0.1 1.0 1 0 0 1 1 1 1 SRP19 protein BHD_2 PF10404.4 gi|284165108|ref|YP_003403387.1| - 0.15 12.3 0.3 0.32 11.3 0.0 1.7 2 0 0 2 2 2 0 Rad4 beta-hairpin domain 2 Peripla_BP_2 PF01497.13 gi|284165109|ref|YP_003403388.1| - 2.2e-30 105.5 5.8 2.2e-30 105.5 4.0 1.4 2 0 0 2 2 2 1 Periplasmic binding protein FecCD PF01032.13 gi|284165110|ref|YP_003403389.1| - 1.4e-87 293.4 32.4 3.1e-87 292.3 22.5 1.5 1 1 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|284165110|ref|YP_003403389.1| - 0.00056 19.2 12.8 0.00056 19.2 8.9 1.9 2 1 0 2 2 2 1 ABC 3 transport family ABC_tran PF00005.22 gi|284165111|ref|YP_003403390.1| - 1.9e-34 118.8 0.0 3.4e-34 118.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284165111|ref|YP_003403390.1| - 6.9e-10 39.3 0.0 2.3e-05 24.5 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|284165111|ref|YP_003403390.1| - 1.1e-05 25.9 0.0 2e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|284165111|ref|YP_003403390.1| - 2.3e-05 23.7 0.2 0.0016 17.7 0.1 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|284165111|ref|YP_003403390.1| - 0.004 17.3 0.0 0.018 15.2 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) F420_oxidored PF03807.12 gi|284165111|ref|YP_003403390.1| - 0.0051 17.2 0.1 0.022 15.1 0.1 2.2 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent AAA_29 PF13555.1 gi|284165111|ref|YP_003403390.1| - 0.0051 16.3 0.1 0.0051 16.3 0.0 2.0 2 0 0 2 2 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|284165111|ref|YP_003403390.1| - 0.0056 16.6 0.4 0.024 14.6 0.3 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.1 gi|284165111|ref|YP_003403390.1| - 0.0056 16.2 0.6 0.017 14.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|284165111|ref|YP_003403390.1| - 0.0076 15.6 0.1 0.03 13.7 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|284165111|ref|YP_003403390.1| - 0.014 15.5 0.0 0.05 13.7 0.0 1.8 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|284165111|ref|YP_003403390.1| - 0.019 14.0 0.0 0.04 13.0 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin MobB PF03205.9 gi|284165111|ref|YP_003403390.1| - 0.02 14.6 0.2 0.088 12.5 0.0 2.2 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.10 gi|284165111|ref|YP_003403390.1| - 0.02 14.6 0.1 0.074 12.7 0.0 2.0 2 0 0 2 2 2 0 NTPase UPF0079 PF02367.12 gi|284165111|ref|YP_003403390.1| - 0.02 14.5 0.1 0.036 13.6 0.1 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 DUF258 PF03193.11 gi|284165111|ref|YP_003403390.1| - 0.02 14.0 0.0 0.038 13.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MMR_HSR1 PF01926.18 gi|284165111|ref|YP_003403390.1| - 0.022 14.6 0.1 0.15 12.0 0.1 2.4 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_33 PF13671.1 gi|284165111|ref|YP_003403390.1| - 0.024 14.5 0.3 0.06 13.2 0.2 1.9 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|284165111|ref|YP_003403390.1| - 0.027 15.2 0.1 0.052 14.3 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|284165111|ref|YP_003403390.1| - 0.058 12.4 0.0 3.2 6.7 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_19 PF13245.1 gi|284165111|ref|YP_003403390.1| - 0.069 12.9 2.4 1.1 9.1 0.1 3.4 2 1 0 2 2 2 0 Part of AAA domain NACHT PF05729.7 gi|284165111|ref|YP_003403390.1| - 0.086 12.4 0.2 0.28 10.8 0.0 1.9 2 0 0 2 2 2 0 NACHT domain cobW PF02492.14 gi|284165111|ref|YP_003403390.1| - 0.18 11.2 1.0 0.31 10.4 0.1 1.8 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain NB-ARC PF00931.17 gi|284165111|ref|YP_003403390.1| - 0.2 10.4 0.0 0.32 9.8 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain Acyl_transf_3 PF01757.17 gi|284165112|ref|YP_003403391.1| - 2.4e-19 69.3 33.3 3.1e-19 69.0 23.1 1.1 1 0 0 1 1 1 1 Acyltransferase family Copper-bind PF00127.15 gi|284165113|ref|YP_003403392.1| - 6.7e-06 26.2 0.0 1.2e-05 25.4 0.0 1.4 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Methyltransf_21 PF05050.7 gi|284165113|ref|YP_003403392.1| - 0.078 12.9 0.2 0.15 11.9 0.1 1.5 1 1 0 1 1 1 0 Methyltransferase FkbM domain TAT_signal PF10518.4 gi|284165113|ref|YP_003403392.1| - 0.47 10.5 6.0 0.74 9.9 4.1 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence ExoD PF06055.7 gi|284165114|ref|YP_003403393.1| - 0.52 9.3 8.5 0.57 9.2 5.9 1.0 1 0 0 1 1 1 0 Exopolysaccharide synthesis, ExoD Nucleos_tra2_N PF01773.15 gi|284165114|ref|YP_003403393.1| - 0.67 10.3 4.1 0.75 10.1 2.8 1.1 1 0 0 1 1 1 0 Na+ dependent nucleoside transporter N-terminus Vps51 PF08700.6 gi|284165115|ref|YP_003403394.1| - 0.13 12.1 0.0 0.26 11.1 0.0 1.4 1 0 0 1 1 1 0 Vps51/Vps67 GatB_N PF02934.10 gi|284165116|ref|YP_003403395.1| - 2.7e-74 249.6 0.0 4.3e-74 248.9 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|284165116|ref|YP_003403395.1| - 2e-22 79.4 0.0 4.5e-22 78.3 0.0 1.6 1 0 0 1 1 1 1 GatB domain GAD PF02938.9 gi|284165116|ref|YP_003403395.1| - 3.1e-14 52.9 0.0 5.7e-14 52.0 0.0 1.5 1 0 0 1 1 1 1 GAD domain YqeY PF09424.5 gi|284165116|ref|YP_003403395.1| - 0.0018 18.1 0.2 0.004 17.0 0.2 1.6 1 0 0 1 1 1 1 Yqey-like protein AsnC_trans_reg PF01037.16 gi|284165117|ref|YP_003403396.1| - 7.1e-11 41.6 0.5 1.3e-10 40.8 0.3 1.4 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|284165117|ref|YP_003403396.1| - 6.1e-08 31.9 0.1 1.1e-07 31.1 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|284165117|ref|YP_003403396.1| - 6.9e-07 28.7 0.0 1.3e-06 27.8 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|284165117|ref|YP_003403396.1| - 4.7e-05 23.1 0.1 0.00016 21.4 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|284165117|ref|YP_003403396.1| - 0.00058 19.5 0.3 0.0012 18.4 0.0 1.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|284165117|ref|YP_003403396.1| - 0.0021 18.3 0.2 0.0058 16.9 0.0 1.8 2 1 0 2 2 2 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|284165117|ref|YP_003403396.1| - 0.0038 16.8 0.0 0.0065 16.1 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|284165117|ref|YP_003403396.1| - 0.025 14.2 0.1 0.056 13.1 0.0 1.7 2 0 0 2 2 2 0 MarR family Nfu_N PF08712.6 gi|284165117|ref|YP_003403396.1| - 0.025 14.2 0.1 0.051 13.1 0.0 1.5 1 1 0 1 1 1 0 Scaffold protein Nfu/NifU N terminal GYD PF08734.6 gi|284165117|ref|YP_003403396.1| - 0.062 13.0 0.1 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 GYD domain DUF2250 PF10007.4 gi|284165117|ref|YP_003403396.1| - 0.08 12.8 0.0 0.17 11.7 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Polyhedrin PF00738.13 gi|284165117|ref|YP_003403396.1| - 0.13 11.2 0.0 0.17 10.8 0.0 1.2 1 0 0 1 1 1 0 Polyhedrin EamA PF00892.15 gi|284165118|ref|YP_003403397.1| - 2.3e-33 114.9 26.2 2.1e-18 66.5 5.9 2.2 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|284165118|ref|YP_003403397.1| - 0.0011 19.1 10.2 0.0011 19.1 7.1 3.7 2 1 2 4 4 4 3 Multidrug resistance efflux transporter TPT PF03151.11 gi|284165118|ref|YP_003403397.1| - 3.2 7.4 23.4 0.063 12.9 6.6 3.0 2 2 0 2 2 2 0 Triose-phosphate Transporter family DZR PF12773.2 gi|284165119|ref|YP_003403398.1| - 0.0062 16.3 0.2 0.013 15.2 0.1 1.5 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|284165119|ref|YP_003403398.1| - 0.0089 15.4 3.3 0.017 14.6 2.3 1.4 1 0 0 1 1 1 1 zinc-ribbon domain Auto_anti-p27 PF06677.7 gi|284165119|ref|YP_003403398.1| - 0.04 13.6 1.2 0.075 12.8 0.8 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) OrfB_Zn_ribbon PF07282.6 gi|284165119|ref|YP_003403398.1| - 0.044 13.4 0.1 0.091 12.4 0.1 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Prok-RING_1 PF14446.1 gi|284165119|ref|YP_003403398.1| - 0.049 13.3 0.6 0.087 12.5 0.4 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-ribbon_3 PF13248.1 gi|284165119|ref|YP_003403398.1| - 0.13 11.5 4.4 2.3 7.5 3.7 2.2 1 1 1 2 2 2 0 zinc-ribbon domain zf-IS66 PF13005.2 gi|284165119|ref|YP_003403398.1| - 0.34 10.9 1.8 4.4 7.3 0.3 2.6 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 UPF0547 PF10571.4 gi|284165119|ref|YP_003403398.1| - 0.92 9.2 3.4 14 5.5 0.2 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-tcix PF14952.1 gi|284165119|ref|YP_003403398.1| - 1 8.7 2.7 13 5.1 0.2 2.3 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding DUF1610 PF07754.6 gi|284165119|ref|YP_003403398.1| - 1.1 9.4 7.3 15 5.7 5.1 2.4 1 1 0 1 1 1 0 Domain of unknown function (DUF1610) zf-C4_Topoisom PF01396.14 gi|284165119|ref|YP_003403398.1| - 1.1 8.7 4.4 2.1 7.9 0.1 2.2 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DNA_ligase_ZBD PF03119.11 gi|284165119|ref|YP_003403398.1| - 3.9 7.2 8.3 2.5 7.8 0.1 2.8 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.5 gi|284165119|ref|YP_003403398.1| - 7.3 6.6 5.6 12 5.9 0.3 2.4 1 1 1 2 2 2 0 Zinc ribbon domain SpoU_methylase PF00588.14 gi|284165121|ref|YP_003403400.1| - 3.9e-27 94.8 0.0 5.2e-27 94.4 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family Cdc6_C PF09079.6 gi|284165122|ref|YP_003403401.1| - 1.1e-18 66.7 0.1 2.4e-18 65.6 0.1 1.6 1 0 0 1 1 1 1 CDC6, C terminal AAA_22 PF13401.1 gi|284165122|ref|YP_003403401.1| - 1.1e-11 44.9 0.2 4.2e-11 43.1 0.0 1.9 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|284165122|ref|YP_003403401.1| - 7.9e-10 39.0 1.1 4.9e-09 36.4 0.0 2.5 1 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|284165122|ref|YP_003403401.1| - 4.8e-05 23.5 0.0 0.00017 21.7 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|284165122|ref|YP_003403401.1| - 0.00016 21.4 0.2 0.0013 18.5 0.2 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) PhoH PF02562.11 gi|284165122|ref|YP_003403401.1| - 0.00025 20.3 0.1 0.037 13.2 0.0 2.3 2 0 0 2 2 2 1 PhoH-like protein Sigma54_activat PF00158.21 gi|284165122|ref|YP_003403401.1| - 0.00026 20.5 0.0 0.00082 18.8 0.0 1.8 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_32 PF13654.1 gi|284165122|ref|YP_003403401.1| - 0.00029 19.6 0.3 0.34 9.5 0.3 2.3 2 0 0 2 2 2 2 AAA domain NB-ARC PF00931.17 gi|284165122|ref|YP_003403401.1| - 0.00043 19.2 0.0 0.00077 18.4 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain DUF87 PF01935.12 gi|284165122|ref|YP_003403401.1| - 0.0007 19.4 1.6 0.004 16.9 0.0 2.4 2 0 0 2 2 2 1 Domain of unknown function DUF87 DUF815 PF05673.8 gi|284165122|ref|YP_003403401.1| - 0.00086 18.3 0.0 0.0019 17.2 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF815) PIF1 PF05970.9 gi|284165122|ref|YP_003403401.1| - 0.0016 17.5 0.0 0.007 15.3 0.0 1.9 2 0 0 2 2 2 1 PIF1-like helicase ATP-synt_ab PF00006.20 gi|284165122|ref|YP_003403401.1| - 0.0017 17.8 0.0 0.003 17.0 0.0 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain IstB_IS21 PF01695.12 gi|284165122|ref|YP_003403401.1| - 0.013 14.9 0.0 0.41 10.0 0.0 2.5 2 0 0 2 2 2 0 IstB-like ATP binding protein ABC_tran PF00005.22 gi|284165122|ref|YP_003403401.1| - 0.018 15.3 0.6 0.057 13.7 0.4 2.1 1 1 0 1 1 1 0 ABC transporter MMR_HSR1 PF01926.18 gi|284165122|ref|YP_003403401.1| - 0.029 14.3 0.5 0.19 11.6 0.0 2.3 2 0 0 2 2 2 0 50S ribosome-binding GTPase FtsK_SpoIIIE PF01580.13 gi|284165122|ref|YP_003403401.1| - 0.036 13.5 0.0 0.1 12.0 0.0 1.8 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_25 PF13481.1 gi|284165122|ref|YP_003403401.1| - 0.036 13.4 1.5 1.8 7.8 0.0 2.4 1 1 1 2 2 2 0 AAA domain Bac_DnaA PF00308.13 gi|284165122|ref|YP_003403401.1| - 0.041 13.5 0.0 0.75 9.4 0.0 2.3 2 0 0 2 2 2 0 Bacterial dnaA protein PCP_red PF08369.5 gi|284165122|ref|YP_003403401.1| - 0.049 13.5 0.2 0.12 12.2 0.2 1.7 1 0 0 1 1 1 0 Proto-chlorophyllide reductase 57 kD subunit RNA_helicase PF00910.17 gi|284165122|ref|YP_003403401.1| - 0.053 13.6 0.0 0.23 11.6 0.0 2.1 2 0 0 2 2 2 0 RNA helicase Arf PF00025.16 gi|284165122|ref|YP_003403401.1| - 0.055 12.7 0.0 0.099 11.8 0.0 1.4 1 0 0 1 1 1 0 ADP-ribosylation factor family NACHT PF05729.7 gi|284165122|ref|YP_003403401.1| - 0.058 13.0 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Arch_ATPase PF01637.13 gi|284165122|ref|YP_003403401.1| - 0.068 12.8 0.2 0.18 11.4 0.0 1.8 2 0 0 2 2 2 0 Archaeal ATPase TrwB_AAD_bind PF10412.4 gi|284165122|ref|YP_003403401.1| - 0.068 11.7 0.0 0.14 10.7 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain DEAD PF00270.24 gi|284165122|ref|YP_003403401.1| - 0.086 12.3 1.1 3.6 7.0 0.2 2.5 1 1 1 2 2 2 0 DEAD/DEAH box helicase Sigma54_activ_2 PF14532.1 gi|284165122|ref|YP_003403401.1| - 0.1 12.6 0.0 0.34 10.9 0.0 1.9 2 0 0 2 2 2 0 Sigma-54 interaction domain SMC_N PF02463.14 gi|284165122|ref|YP_003403401.1| - 0.13 11.4 1.2 17 4.5 0.0 2.8 3 0 0 3 3 3 0 RecF/RecN/SMC N terminal domain Miro PF08477.8 gi|284165122|ref|YP_003403401.1| - 0.15 12.5 0.4 0.42 11.1 0.1 2.0 2 1 0 2 2 2 0 Miro-like protein Phage-MuB_C PF09077.6 gi|284165122|ref|YP_003403401.1| - 0.19 11.3 1.8 0.53 9.9 0.1 2.3 2 0 0 2 2 2 0 Mu B transposition protein, C terminal Pterin_bind PF00809.17 gi|284165123|ref|YP_003403402.1| - 1.8e-30 105.9 0.0 2.8e-30 105.2 0.0 1.3 1 0 0 1 1 1 1 Pterin binding enzyme Phage_GPL PF05926.6 gi|284165123|ref|YP_003403402.1| - 0.093 12.5 0.7 0.17 11.7 0.1 1.7 2 0 0 2 2 2 0 Phage head completion protein (GPL) MAF_flag10 PF01973.13 gi|284165124|ref|YP_003403403.1| - 8.5e-26 90.4 0.0 1e-25 90.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 Cdc6_C PF09079.6 gi|284165124|ref|YP_003403403.1| - 0.085 12.5 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 CDC6, C terminal DZR PF12773.2 gi|284165125|ref|YP_003403404.1| - 0.015 15.0 0.8 0.022 14.5 0.5 1.2 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.14 gi|284165125|ref|YP_003403404.1| - 0.14 11.8 2.7 0.19 11.4 1.8 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zinc_ribbon_2 PF13240.1 gi|284165125|ref|YP_003403404.1| - 0.37 10.3 5.7 0.56 9.7 3.9 1.3 1 0 0 1 1 1 0 zinc-ribbon domain zf-FPG_IleRS PF06827.9 gi|284165125|ref|YP_003403404.1| - 0.55 9.9 5.9 5.6 6.7 4.2 2.1 1 1 0 1 1 1 0 Zinc finger found in FPG and IleRS Zn_Tnp_IS1595 PF12760.2 gi|284165125|ref|YP_003403404.1| - 0.58 10.0 6.5 0.29 10.9 0.5 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-C2HC PF01530.13 gi|284165125|ref|YP_003403404.1| - 0.7 9.6 4.7 1.3 8.8 3.3 1.4 1 0 0 1 1 1 0 Zinc finger, C2HC type RNA_POL_M_15KD PF02150.11 gi|284165125|ref|YP_003403404.1| - 0.89 9.3 0.1 0.89 9.3 0.1 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit PRA1 PF03208.14 gi|284165126|ref|YP_003403405.1| - 2.8 7.2 7.1 0.43 9.9 1.4 1.9 1 1 1 2 2 2 0 PRA1 family protein AP_endonuc_2 PF01261.19 gi|284165128|ref|YP_003403407.1| - 1.6e-34 119.1 1.0 2.7e-34 118.3 0.5 1.5 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.7 gi|284165128|ref|YP_003403407.1| - 3e-19 68.3 0.1 6.1e-19 67.3 0.0 1.6 1 0 0 1 1 1 1 AP endonuclease family 2 C terminus DUF3122 PF11320.3 gi|284165128|ref|YP_003403407.1| - 0.094 12.6 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3122) CarboxypepD_reg PF13620.1 gi|284165129|ref|YP_003403408.1| - 0.0092 16.0 0.0 0.013 15.5 0.0 1.3 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain GFO_IDH_MocA PF01408.17 gi|284165130|ref|YP_003403409.1| - 6.9e-25 87.8 0.0 1.1e-24 87.2 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|284165130|ref|YP_003403409.1| - 2.3e-11 43.4 0.0 4.7e-11 42.4 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain 2-Hacid_dh_C PF02826.14 gi|284165130|ref|YP_003403409.1| - 1.3e-05 24.4 0.0 2e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|284165130|ref|YP_003403409.1| - 0.0001 22.6 0.0 0.00022 21.5 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|284165130|ref|YP_003403409.1| - 0.004 17.0 0.0 0.011 15.6 0.0 1.7 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_3 PF03447.11 gi|284165130|ref|YP_003403409.1| - 0.0041 17.5 0.1 0.0084 16.5 0.0 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain IlvN PF07991.7 gi|284165130|ref|YP_003403409.1| - 0.042 13.2 0.0 0.072 12.4 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain Semialdhyde_dh PF01118.19 gi|284165130|ref|YP_003403409.1| - 0.064 13.5 0.0 0.15 12.3 0.0 1.6 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain ABC_tran PF00005.22 gi|284165131|ref|YP_003403410.1| - 2.8e-32 111.8 0.0 4.7e-32 111.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284165131|ref|YP_003403410.1| - 4.3e-09 36.7 0.0 1.1e-05 25.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain TOBE PF03459.12 gi|284165131|ref|YP_003403410.1| - 3.2e-06 27.1 0.1 0.15 12.2 0.0 4.0 2 2 0 2 2 2 2 TOBE domain TOBE_2 PF08402.5 gi|284165131|ref|YP_003403410.1| - 0.00017 21.4 0.1 0.007 16.3 0.1 2.8 1 1 0 1 1 1 1 TOBE domain SMC_N PF02463.14 gi|284165131|ref|YP_003403410.1| - 0.00031 20.0 0.1 0.0014 17.8 0.1 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|284165131|ref|YP_003403410.1| - 0.0021 17.2 0.0 0.0033 16.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|284165131|ref|YP_003403410.1| - 0.0023 17.4 0.0 0.0051 16.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|284165131|ref|YP_003403410.1| - 0.0053 16.6 0.3 0.016 15.0 0.2 1.8 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|284165131|ref|YP_003403410.1| - 0.0055 16.2 0.0 0.014 14.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|284165131|ref|YP_003403410.1| - 0.0086 15.1 0.0 0.021 13.8 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain AAA_25 PF13481.1 gi|284165131|ref|YP_003403410.1| - 0.015 14.7 0.2 0.57 9.5 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|284165131|ref|YP_003403410.1| - 0.015 15.3 0.5 0.046 13.8 0.3 1.9 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|284165131|ref|YP_003403410.1| - 0.022 14.7 0.5 0.087 12.7 0.3 2.0 1 1 0 1 1 1 0 AAA ATPase domain RNA_helicase PF00910.17 gi|284165131|ref|YP_003403410.1| - 0.032 14.4 0.0 0.098 12.8 0.0 1.8 2 0 0 2 2 1 0 RNA helicase AAA_17 PF13207.1 gi|284165131|ref|YP_003403410.1| - 0.044 14.6 0.1 0.14 12.9 0.1 2.0 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|284165131|ref|YP_003403410.1| - 0.048 12.3 0.0 0.071 11.7 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein MobB PF03205.9 gi|284165131|ref|YP_003403410.1| - 0.049 13.3 0.1 0.17 11.6 0.0 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.24 gi|284165131|ref|YP_003403410.1| - 0.075 13.2 0.1 0.21 11.8 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|284165131|ref|YP_003403410.1| - 0.078 11.8 0.0 0.12 11.1 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_10 PF12846.2 gi|284165131|ref|YP_003403410.1| - 0.12 11.8 0.2 0.51 9.7 0.0 1.9 2 0 0 2 2 2 0 AAA-like domain BPD_transp_1 PF00528.17 gi|284165132|ref|YP_003403411.1| - 3.7e-11 42.8 19.6 3.7e-11 42.8 13.6 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|284165133|ref|YP_003403412.1| - 2.8e-16 59.5 20.1 2.8e-16 59.5 14.0 2.8 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component TraP PF07296.6 gi|284165133|ref|YP_003403412.1| - 0.11 11.4 3.1 1.2 8.0 0.3 2.3 2 0 0 2 2 2 0 TraP protein ThiW PF09512.5 gi|284165133|ref|YP_003403412.1| - 0.15 11.8 13.3 0.076 12.8 3.6 2.5 2 0 0 2 2 2 0 Thiamine-precursor transporter protein (ThiW) SBP_bac_8 PF13416.1 gi|284165134|ref|YP_003403413.1| - 1.9e-16 60.6 0.3 3.2e-16 59.8 0.2 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|284165134|ref|YP_003403413.1| - 2e-11 44.2 0.2 4.9e-11 42.9 0.2 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Regulator_TrmB PF11495.3 gi|284165135|ref|YP_003403414.1| - 1.1e-69 234.0 0.6 1.6e-69 233.4 0.3 1.4 2 0 0 2 2 2 1 Archaeal transcriptional regulator TrmB TrmB PF01978.14 gi|284165135|ref|YP_003403414.1| - 2.4e-21 75.2 0.1 7.2e-21 73.6 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|284165135|ref|YP_003403414.1| - 1.2e-06 28.2 0.1 5.6e-06 26.0 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|284165135|ref|YP_003403414.1| - 3.6e-06 26.5 0.2 1.3e-05 24.7 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.5 gi|284165135|ref|YP_003403414.1| - 5.3e-05 22.7 0.2 0.00013 21.5 0.0 1.7 2 0 0 2 2 1 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|284165135|ref|YP_003403414.1| - 0.00022 20.7 0.0 0.0036 16.9 0.0 2.7 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|284165135|ref|YP_003403414.1| - 0.0003 20.1 0.0 0.0013 18.0 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_CodY PF08222.6 gi|284165135|ref|YP_003403414.1| - 0.0021 17.3 0.4 0.0057 15.9 0.0 2.0 2 0 0 2 2 2 1 CodY helix-turn-helix domain Rrf2 PF02082.15 gi|284165135|ref|YP_003403414.1| - 0.0027 17.7 0.0 0.006 16.6 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator DUF2250 PF10007.4 gi|284165135|ref|YP_003403414.1| - 0.012 15.5 0.0 0.027 14.3 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) MarR PF01047.17 gi|284165135|ref|YP_003403414.1| - 0.012 15.2 0.0 0.13 11.9 0.0 2.3 2 0 0 2 2 2 0 MarR family HTH_27 PF13463.1 gi|284165135|ref|YP_003403414.1| - 0.034 14.4 0.4 0.19 12.1 0.0 2.4 3 0 0 3 3 2 0 Winged helix DNA-binding domain HTH_7 PF02796.10 gi|284165135|ref|YP_003403414.1| - 0.078 12.8 0.1 17 5.3 0.0 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase Phage_rep_org_N PF09681.5 gi|284165135|ref|YP_003403414.1| - 0.089 12.3 0.0 0.2 11.2 0.0 1.6 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) Sigma70_r4 PF04545.11 gi|284165135|ref|YP_003403414.1| - 0.1 11.8 0.0 0.84 9.0 0.0 2.5 2 1 0 2 2 2 0 Sigma-70, region 4 HTH_29 PF13551.1 gi|284165135|ref|YP_003403414.1| - 0.14 12.2 0.2 1.7 8.8 0.0 2.5 2 1 0 2 2 2 0 Winged helix-turn helix MS_channel PF00924.13 gi|284165136|ref|YP_003403415.1| - 1e-33 116.3 0.2 1.4e-33 115.9 0.1 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel Usp PF00582.21 gi|284165137|ref|YP_003403416.1| - 4.5e-33 114.3 2.5 5e-33 114.2 1.7 1.0 1 0 0 1 1 1 1 Universal stress protein family HGTP_anticodon PF03129.15 gi|284165137|ref|YP_003403416.1| - 0.1 12.5 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 Anticodon binding domain Usp PF00582.21 gi|284165138|ref|YP_003403417.1| - 1.5e-12 47.9 0.5 2.2e-12 47.3 0.3 1.3 1 0 0 1 1 1 1 Universal stress protein family Nudix_N_2 PF14803.1 gi|284165139|ref|YP_003403418.1| - 0.027 14.1 0.1 9 6.0 0.0 2.3 2 0 0 2 2 2 0 Nudix N-terminal Zn_Tnp_IS91 PF14319.1 gi|284165139|ref|YP_003403418.1| - 0.11 11.9 0.9 0.13 11.7 0.6 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain DNA_RNApol_7kD PF03604.8 gi|284165139|ref|YP_003403418.1| - 0.12 11.8 0.5 0.18 11.3 0.3 1.3 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-FPG_IleRS PF06827.9 gi|284165139|ref|YP_003403418.1| - 0.4 10.3 2.6 7.5 6.3 0.2 2.5 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-RanBP PF00641.13 gi|284165139|ref|YP_003403418.1| - 0.52 9.4 5.0 2.5 7.2 3.5 1.9 1 1 0 1 1 1 0 Zn-finger in Ran binding protein and others Prim_Zn_Ribbon PF08273.7 gi|284165139|ref|YP_003403418.1| - 0.84 9.7 6.5 1.1 9.4 0.7 2.3 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase zf-ribbon_3 PF13248.1 gi|284165139|ref|YP_003403418.1| - 3.4 6.9 6.3 31 3.9 4.3 2.1 1 1 0 1 1 1 0 zinc-ribbon domain DUF3409 PF11889.3 gi|284165140|ref|YP_003403419.1| - 0.12 12.1 0.0 0.18 11.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3409) Aminotran_5 PF00266.14 gi|284165141|ref|YP_003403420.1| - 1.3e-35 122.8 0.0 1.7e-35 122.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|284165141|ref|YP_003403420.1| - 2.1e-05 23.0 0.0 2.9e-05 22.5 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|284165141|ref|YP_003403420.1| - 0.00032 19.8 0.6 0.0005 19.2 0.4 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family B12-binding PF02310.14 gi|284165141|ref|YP_003403420.1| - 0.0013 18.5 0.1 0.0035 17.2 0.1 1.6 1 0 0 1 1 1 1 B12 binding domain DUF457 PF04307.9 gi|284165142|ref|YP_003403421.1| - 1.8e-13 50.1 28.5 1.3e-07 31.0 7.0 2.9 2 1 0 2 2 2 2 Predicted membrane-bound metal-dependent hydrolase (DUF457) TMEM220 PF15071.1 gi|284165143|ref|YP_003403422.1| - 5.1 7.5 0.0 5.1 7.5 0.0 3.1 2 1 0 3 3 3 0 Transmembrane family 220, helix DUF2238 PF09997.4 gi|284165144|ref|YP_003403423.1| - 0.00061 19.2 2.3 0.0011 18.3 1.6 1.7 1 1 0 1 1 1 1 Predicted membrane protein (DUF2238) DUF4234 PF14018.1 gi|284165144|ref|YP_003403423.1| - 3.3 7.5 6.0 13 5.6 3.8 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4234) Dodecin PF07311.7 gi|284165145|ref|YP_003403424.1| - 1.3e-23 82.8 0.1 1.4e-23 82.7 0.1 1.0 1 0 0 1 1 1 1 Dodecin Fe-S_biosyn PF01521.15 gi|284165146|ref|YP_003403425.1| - 1.9e-18 66.4 0.0 2.2e-18 66.2 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis Histidinol_dh PF00815.15 gi|284165148|ref|YP_003403427.1| - 1.4e-150 501.5 2.2 1.7e-150 501.2 1.5 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase TM2 PF05154.11 gi|284165149|ref|YP_003403428.1| - 0.4 10.9 3.8 0.62 10.3 1.9 1.8 1 1 1 2 2 2 0 TM2 domain DUF4282 PF14110.1 gi|284165149|ref|YP_003403428.1| - 4.4 7.5 7.1 5.5 7.2 4.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) DUF457 PF04307.9 gi|284165150|ref|YP_003403429.1| - 3.2e-09 36.2 5.3 5.1e-09 35.6 3.7 1.3 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) SAM_2 PF07647.12 gi|284165152|ref|YP_003403431.1| - 0.083 12.7 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 SAM domain (Sterile alpha motif) COX2 PF00116.15 gi|284165153|ref|YP_003403432.1| - 2.3e-22 79.0 0.4 2.9e-21 75.5 0.3 2.2 1 1 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain COX2_TM PF02790.10 gi|284165153|ref|YP_003403432.1| - 7.5e-07 29.0 0.1 1.1e-06 28.4 0.1 1.3 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, transmembrane domain Cupredoxin_1 PF13473.1 gi|284165153|ref|YP_003403432.1| - 0.00014 21.6 0.0 0.00029 20.6 0.0 1.5 1 0 0 1 1 1 1 Cupredoxin-like domain Ni_hydr_CYTB PF01292.15 gi|284165153|ref|YP_003403432.1| - 0.015 14.7 0.0 0.02 14.2 0.0 1.2 1 0 0 1 1 1 0 Prokaryotic cytochrome b561 COX1 PF00115.15 gi|284165154|ref|YP_003403433.1| - 3.7e-144 480.6 56.5 3.7e-144 480.6 39.2 2.1 2 0 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I DUF3588 PF12140.3 gi|284165155|ref|YP_003403434.1| - 0.016 15.2 0.0 0.024 14.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3588) Mn_catalase PF05067.7 gi|284165156|ref|YP_003403435.1| - 8.6e-80 267.5 0.1 1e-79 267.2 0.1 1.0 1 0 0 1 1 1 1 Manganese containing catalase Rubrerythrin PF02915.12 gi|284165156|ref|YP_003403435.1| - 0.0039 17.5 0.0 0.026 14.8 0.0 2.0 2 0 0 2 2 2 1 Rubrerythrin Ferritin-like PF12902.2 gi|284165156|ref|YP_003403435.1| - 0.013 15.1 0.2 0.02 14.5 0.1 1.4 1 0 0 1 1 1 0 Ferritin-like Ferritin PF00210.19 gi|284165156|ref|YP_003403435.1| - 0.034 13.8 2.8 0.16 11.7 1.0 2.6 2 1 1 3 3 3 0 Ferritin-like domain COX3 PF00510.13 gi|284165159|ref|YP_003403438.1| - 4.4e-37 127.9 7.2 5.9e-37 127.5 5.0 1.1 1 0 0 1 1 1 1 Cytochrome c oxidase subunit III HATPase_c PF02518.21 gi|284165160|ref|YP_003403439.1| - 2.9e-29 100.9 0.0 9e-29 99.4 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|284165160|ref|YP_003403439.1| - 3.8e-12 46.0 0.0 3.8e-12 46.0 0.0 2.6 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|284165160|ref|YP_003403439.1| - 6.7e-10 38.9 0.3 2e-09 37.4 0.1 2.0 1 1 0 1 1 1 1 PAS fold HATPase_c_5 PF14501.1 gi|284165160|ref|YP_003403439.1| - 0.00045 19.8 0.0 1 9.0 0.0 2.3 2 0 0 2 2 2 2 GHKL domain PAS_9 PF13426.1 gi|284165160|ref|YP_003403439.1| - 0.029 14.7 0.0 0.067 13.5 0.0 1.6 1 0 0 1 1 1 0 PAS domain HATPase_c_3 PF13589.1 gi|284165160|ref|YP_003403439.1| - 0.07 12.7 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DAO PF01266.19 gi|284165161|ref|YP_003403440.1| - 6.3e-11 41.7 0.3 8.6e-05 21.5 0.2 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|284165161|ref|YP_003403440.1| - 5.1e-10 39.5 0.1 3.5e-09 36.8 0.0 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|284165161|ref|YP_003403440.1| - 9.4e-08 31.4 0.3 0.0015 17.6 0.1 2.1 2 0 0 2 2 2 2 FAD binding domain NAD_binding_9 PF13454.1 gi|284165161|ref|YP_003403440.1| - 4.9e-07 29.6 0.4 0.0066 16.2 0.0 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding FAD_oxidored PF12831.2 gi|284165161|ref|YP_003403440.1| - 1.1e-06 28.0 0.1 2.2e-06 27.0 0.0 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|284165161|ref|YP_003403440.1| - 4.6e-06 25.3 0.4 0.00057 18.4 0.9 2.1 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|284165161|ref|YP_003403440.1| - 8.9e-05 22.4 0.2 0.00029 20.8 0.1 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|284165161|ref|YP_003403440.1| - 0.00013 20.9 1.2 0.00022 20.2 0.8 1.3 1 0 0 1 1 1 1 FAD binding domain Trp_halogenase PF04820.9 gi|284165161|ref|YP_003403440.1| - 0.00017 20.3 0.2 0.02 13.5 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase GIDA PF01134.17 gi|284165161|ref|YP_003403440.1| - 0.00043 19.2 4.1 0.00045 19.2 0.2 2.5 3 0 0 3 3 3 1 Glucose inhibited division protein A Thi4 PF01946.12 gi|284165161|ref|YP_003403440.1| - 0.002 17.2 0.0 0.0031 16.6 0.0 1.3 1 0 0 1 1 1 1 Thi4 family Lycopene_cycl PF05834.7 gi|284165161|ref|YP_003403440.1| - 0.027 13.4 0.1 0.19 10.6 0.1 2.0 2 0 0 2 2 2 0 Lycopene cyclase protein Pyr_redox PF00070.22 gi|284165161|ref|YP_003403440.1| - 0.038 14.3 0.3 1.5 9.3 0.6 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.14 gi|284165162|ref|YP_003403441.1| - 2.2e-55 186.5 0.0 3e-55 186.1 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|284165162|ref|YP_003403441.1| - 5.7e-14 51.7 0.0 7e-14 51.4 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IlvN PF07991.7 gi|284165162|ref|YP_003403441.1| - 0.01 15.2 0.0 0.088 12.1 0.0 2.0 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, catalytic domain ThiF PF00899.16 gi|284165162|ref|YP_003403441.1| - 0.015 15.1 0.3 0.049 13.4 0.1 1.9 2 0 0 2 2 2 0 ThiF family F420_oxidored PF03807.12 gi|284165162|ref|YP_003403441.1| - 0.02 15.2 0.0 0.039 14.3 0.0 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|284165162|ref|YP_003403441.1| - 0.031 14.1 0.0 0.048 13.5 0.0 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase DNA_pol3_chi PF04364.8 gi|284165162|ref|YP_003403441.1| - 0.17 11.7 1.1 11 5.8 0.2 2.4 2 0 0 2 2 2 0 DNA polymerase III chi subunit, HolC Usp PF00582.21 gi|284165163|ref|YP_003403442.1| - 2.1e-12 47.4 2.0 2.5e-12 47.1 1.4 1.0 1 0 0 1 1 1 1 Universal stress protein family HGD-D PF06050.8 gi|284165163|ref|YP_003403442.1| - 0.0031 16.3 0.0 0.0035 16.2 0.0 1.1 1 0 0 1 1 1 1 2-hydroxyglutaryl-CoA dehydratase, D-component HTH_20 PF12840.2 gi|284165164|ref|YP_003403443.1| - 5e-05 23.0 1.7 0.00026 20.7 1.2 2.1 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.1 gi|284165164|ref|YP_003403443.1| - 0.17 11.7 0.0 0.26 11.1 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix Semialdhyde_dh PF01118.19 gi|284165165|ref|YP_003403444.1| - 3.2e-35 121.0 0.0 5.4e-35 120.3 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|284165165|ref|YP_003403444.1| - 8.1e-31 107.2 0.0 1.2e-30 106.7 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.15 gi|284165165|ref|YP_003403444.1| - 1.8e-05 24.6 0.0 3.3e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus DXP_reductoisom PF02670.11 gi|284165165|ref|YP_003403444.1| - 0.00015 22.3 0.0 0.00027 21.4 0.0 1.4 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase GFO_IDH_MocA PF01408.17 gi|284165165|ref|YP_003403444.1| - 0.0022 18.5 0.0 0.0045 17.5 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Saccharop_dh PF03435.13 gi|284165165|ref|YP_003403444.1| - 0.026 13.5 0.0 0.067 12.1 0.0 1.6 2 0 0 2 2 2 0 Saccharopine dehydrogenase Gp_dh_C PF02800.15 gi|284165165|ref|YP_003403444.1| - 0.035 13.5 0.0 0.089 12.2 0.0 1.6 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Subtilosin_A PF11420.3 gi|284165165|ref|YP_003403444.1| - 0.52 10.3 2.4 11 6.1 0.4 2.9 2 1 0 2 2 2 0 Bacteriocin subtilosin A DUF4013 PF13197.1 gi|284165167|ref|YP_003403446.1| - 0.05 12.9 11.8 0.061 12.6 8.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4013) DctQ PF04290.7 gi|284165167|ref|YP_003403446.1| - 0.97 9.2 10.1 1.2 8.8 7.0 1.1 1 0 0 1 1 1 0 Tripartite ATP-independent periplasmic transporters, DctQ component Spo7 PF03907.8 gi|284165167|ref|YP_003403446.1| - 1.4 8.5 4.5 1.7 8.1 3.1 1.0 1 0 0 1 1 1 0 Spo7-like protein Ribosomal_S17e PF00833.13 gi|284165168|ref|YP_003403447.1| - 2.2e-14 53.2 0.1 2.6e-14 53.0 0.1 1.0 1 0 0 1 1 1 1 Ribosomal S17 DUF4019 PF13211.1 gi|284165168|ref|YP_003403447.1| - 0.048 13.9 0.0 0.065 13.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4019) DUF447 PF04289.7 gi|284165169|ref|YP_003403448.1| - 6.9e-33 113.6 0.0 9.2e-33 113.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF447) CitG PF01874.11 gi|284165170|ref|YP_003403449.1| - 5.8e-62 209.3 2.0 6.8e-62 209.1 1.4 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase zf-MIZ PF02891.15 gi|284165171|ref|YP_003403450.1| - 0.39 10.2 3.2 1.7 8.1 0.3 2.2 2 0 0 2 2 2 0 MIZ/SP-RING zinc finger Rubredoxin PF00301.15 gi|284165171|ref|YP_003403450.1| - 1.5 8.7 7.0 0.27 11.1 0.8 2.2 2 0 0 2 2 2 0 Rubredoxin Dus PF01207.12 gi|284165172|ref|YP_003403451.1| - 1.1e-05 24.4 0.7 6.2e-05 21.9 0.5 1.9 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) Radical_SAM PF04055.16 gi|284165172|ref|YP_003403451.1| - 1.9e-05 24.8 0.1 0.69 10.0 0.0 3.0 1 1 2 3 3 3 2 Radical SAM superfamily His_biosynth PF00977.16 gi|284165172|ref|YP_003403451.1| - 0.00018 20.8 0.1 0.0003 20.1 0.0 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein IGPS PF00218.16 gi|284165172|ref|YP_003403451.1| - 0.023 13.7 0.0 0.036 13.1 0.0 1.3 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase DUF1633 PF07794.6 gi|284165172|ref|YP_003403451.1| - 0.028 12.4 2.1 0.03 12.3 1.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1633) QRPTase_C PF01729.14 gi|284165172|ref|YP_003403451.1| - 0.094 12.2 0.1 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain Ribul_P_3_epim PF00834.14 gi|284165172|ref|YP_003403451.1| - 0.11 11.5 0.2 0.31 10.1 0.1 1.9 1 1 0 1 1 1 0 Ribulose-phosphate 3 epimerase family UPF0052 PF01933.13 gi|284165173|ref|YP_003403452.1| - 1.3e-44 152.7 0.0 1.8e-44 152.2 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 Oxidored_nitro PF00148.14 gi|284165173|ref|YP_003403452.1| - 0.0076 14.9 0.0 0.011 14.4 0.0 1.3 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase MatE PF01554.13 gi|284165174|ref|YP_003403453.1| - 1.2e-60 203.8 36.4 1.1e-34 119.3 9.5 3.1 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|284165174|ref|YP_003403453.1| - 9.1e-05 22.2 9.5 9.1e-05 22.2 6.6 5.0 4 3 0 4 4 4 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.1 gi|284165174|ref|YP_003403453.1| - 0.074 12.4 49.0 0.1 12.0 8.8 3.6 2 1 1 3 3 3 0 Polysaccharide biosynthesis protein TetR_C_6 PF13977.1 gi|284165175|ref|YP_003403454.1| - 3.5e-12 46.3 3.3 6.7e-12 45.4 1.2 2.0 1 1 1 2 2 2 2 Bacterial transcriptional repressor TetR_N PF00440.18 gi|284165175|ref|YP_003403454.1| - 1.6e-09 37.2 0.3 2.6e-09 36.5 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family CorA PF01544.13 gi|284165175|ref|YP_003403454.1| - 0.011 14.8 0.1 0.019 14.0 0.1 1.4 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein Hemerythrin PF01814.18 gi|284165175|ref|YP_003403454.1| - 0.026 14.6 2.4 0.033 14.3 0.7 1.9 1 1 0 2 2 2 0 Hemerythrin HHE cation binding domain priB_priC PF07445.7 gi|284165175|ref|YP_003403454.1| - 0.03 13.7 0.1 0.062 12.7 0.0 1.6 2 0 0 2 2 2 0 Primosomal replication protein priB and priC TetR_C_4 PF08359.6 gi|284165175|ref|YP_003403454.1| - 0.13 12.2 0.0 0.21 11.4 0.0 1.5 1 1 0 1 1 1 0 YsiA-like protein, C-terminal region DNA_ligase_A_M PF01068.16 gi|284165177|ref|YP_003403456.1| - 9.9e-42 142.5 0.0 1.6e-41 141.8 0.0 1.3 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|284165177|ref|YP_003403456.1| - 8.4e-40 136.4 0.0 5.2e-37 127.3 0.0 2.5 1 1 1 2 2 2 2 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|284165177|ref|YP_003403456.1| - 5.7e-17 61.9 0.0 2e-16 60.1 0.0 2.0 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region mRNA_cap_enzyme PF01331.14 gi|284165177|ref|YP_003403456.1| - 0.0097 15.6 0.0 3.2 7.4 0.0 2.1 2 0 0 2 2 2 2 mRNA capping enzyme, catalytic domain Hemerythrin PF01814.18 gi|284165177|ref|YP_003403456.1| - 0.9 9.6 8.4 3.8 7.6 0.0 4.0 2 1 1 4 4 4 0 Hemerythrin HHE cation binding domain FUSC PF04632.7 gi|284165177|ref|YP_003403456.1| - 2.4 6.4 3.6 0.66 8.3 0.3 1.6 2 0 0 2 2 2 0 Fusaric acid resistance protein family MFS_1 PF07690.11 gi|284165178|ref|YP_003403457.1| - 4.2e-39 134.2 64.0 8.6e-27 93.7 24.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|284165178|ref|YP_003403457.1| - 0.0015 18.2 3.2 0.28 10.9 0.0 3.7 3 2 0 3 3 3 2 MFS_1 like family DUF4006 PF13179.1 gi|284165178|ref|YP_003403457.1| - 0.98 9.0 3.1 4.5 6.9 2.1 2.1 1 0 0 1 1 1 0 Family of unknown function (DUF4006) Aminotran_1_2 PF00155.16 gi|284165179|ref|YP_003403458.1| - 5e-65 219.8 0.0 5.7e-65 219.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|284165179|ref|YP_003403458.1| - 7e-05 21.2 0.0 0.00013 20.3 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Alliinase_C PF04864.8 gi|284165179|ref|YP_003403458.1| - 0.021 13.5 0.0 0.076 11.6 0.0 1.8 1 1 0 1 1 1 0 Allinase Aminotran_5 PF00266.14 gi|284165179|ref|YP_003403458.1| - 0.021 13.5 0.0 0.28 9.8 0.0 2.2 2 0 0 2 2 2 0 Aminotransferase class-V HTH_38 PF13936.1 gi|284165179|ref|YP_003403458.1| - 0.072 12.6 0.0 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain AAA_18 PF13238.1 gi|284165180|ref|YP_003403459.1| - 6.1e-25 88.0 0.0 1e-24 87.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|284165180|ref|YP_003403459.1| - 1.9e-19 70.6 0.7 4.4e-19 69.4 0.1 1.6 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|284165180|ref|YP_003403459.1| - 0.00033 20.6 0.4 0.00033 20.6 0.3 2.2 1 1 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|284165180|ref|YP_003403459.1| - 0.00046 19.8 0.7 0.0028 17.3 0.0 2.2 2 0 0 2 2 2 1 Part of AAA domain AAA_33 PF13671.1 gi|284165180|ref|YP_003403459.1| - 0.0016 18.3 3.8 0.18 11.6 0.4 2.3 1 1 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|284165180|ref|YP_003403459.1| - 0.0047 17.0 0.0 0.0065 16.6 0.0 1.3 1 1 0 1 1 1 1 AAA domain PRK PF00485.13 gi|284165180|ref|YP_003403459.1| - 0.0069 15.9 0.1 0.03 13.8 0.0 1.9 1 1 1 2 2 2 1 Phosphoribulokinase / Uridine kinase family dNK PF01712.14 gi|284165180|ref|YP_003403459.1| - 0.013 15.4 0.0 0.014 15.2 0.0 1.2 1 0 0 1 1 1 0 Deoxynucleoside kinase AAA_16 PF13191.1 gi|284165180|ref|YP_003403459.1| - 0.015 15.2 1.6 0.036 14.0 1.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain APS_kinase PF01583.15 gi|284165180|ref|YP_003403459.1| - 0.029 14.0 0.0 0.041 13.5 0.0 1.2 1 0 0 1 1 1 0 Adenylylsulphate kinase KTI12 PF08433.5 gi|284165180|ref|YP_003403459.1| - 0.03 13.5 0.0 0.039 13.1 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 L27_2 PF09045.5 gi|284165180|ref|YP_003403459.1| - 0.034 13.6 0.2 0.79 9.3 0.1 2.2 2 0 0 2 2 2 0 L27_2 NTPase_1 PF03266.10 gi|284165180|ref|YP_003403459.1| - 0.038 13.7 0.1 0.083 12.6 0.0 1.6 1 0 0 1 1 1 0 NTPase ArgK PF03308.11 gi|284165180|ref|YP_003403459.1| - 0.062 12.0 0.1 0.13 11.0 0.0 1.5 2 0 0 2 2 2 0 ArgK protein Zeta_toxin PF06414.7 gi|284165180|ref|YP_003403459.1| - 0.081 12.0 0.6 0.36 9.8 0.0 2.2 1 1 1 2 2 2 0 Zeta toxin Thymidylate_kin PF02223.12 gi|284165180|ref|YP_003403459.1| - 0.091 12.1 0.1 2.3 7.5 0.0 2.2 2 0 0 2 2 2 0 Thymidylate kinase AAA PF00004.24 gi|284165180|ref|YP_003403459.1| - 0.099 12.8 0.0 0.35 11.0 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|284165180|ref|YP_003403459.1| - 0.1 12.3 0.0 0.21 11.3 0.0 1.5 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) DUF1470 PF07336.6 gi|284165180|ref|YP_003403459.1| - 0.71 10.1 17.5 4.4 7.6 8.9 3.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1470) CDP-OH_P_transf PF01066.16 gi|284165181|ref|YP_003403460.1| - 3.7e-11 43.2 11.4 9.2e-11 41.9 7.9 1.8 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase HTH_19 PF12844.2 gi|284165182|ref|YP_003403461.1| - 1.9e-09 37.4 0.2 3.7e-09 36.4 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|284165182|ref|YP_003403461.1| - 1.9e-09 37.1 0.2 2.6e-09 36.7 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|284165182|ref|YP_003403461.1| - 4.2e-07 30.0 0.1 6.6e-07 29.4 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|284165182|ref|YP_003403461.1| - 1.3e-05 24.7 0.3 2e-05 24.1 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain NOA36 PF06524.7 gi|284165182|ref|YP_003403461.1| - 0.013 14.8 5.4 0.016 14.4 3.8 1.1 1 0 0 1 1 1 0 NOA36 protein Macoilin PF09726.4 gi|284165182|ref|YP_003403461.1| - 0.44 8.7 10.2 0.46 8.7 7.1 1.0 1 0 0 1 1 1 0 Transmembrane protein FAM75 PF14650.1 gi|284165182|ref|YP_003403461.1| - 2.9 7.1 6.9 3.7 6.8 4.7 1.1 1 0 0 1 1 1 0 FAM75 family Corona_nucleoca PF00937.13 gi|284165182|ref|YP_003403461.1| - 3.2 6.6 8.6 4 6.2 6.0 1.1 1 0 0 1 1 1 0 Coronavirus nucleocapsid protein RAP1 PF07218.6 gi|284165182|ref|YP_003403461.1| - 5.8 4.8 12.0 6.3 4.7 8.3 1.2 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) DUF3827 PF12877.2 gi|284165182|ref|YP_003403461.1| - 8.5 4.3 9.9 10 4.0 6.9 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3827) TIM PF00121.13 gi|284165183|ref|YP_003403462.1| - 1.6e-25 89.5 0.1 2.1e-15 56.4 0.0 2.0 1 1 1 2 2 2 2 Triosephosphate isomerase ThiG PF05690.9 gi|284165183|ref|YP_003403462.1| - 4.8e-05 22.5 3.1 7.3e-05 21.9 1.8 1.7 1 1 0 1 1 1 1 Thiazole biosynthesis protein ThiG IGPS PF00218.16 gi|284165183|ref|YP_003403462.1| - 0.00031 19.8 0.1 0.0034 16.4 0.0 2.4 1 1 1 2 2 2 1 Indole-3-glycerol phosphate synthase Hydrolase_like PF13242.1 gi|284165183|ref|YP_003403462.1| - 0.0061 16.2 1.8 0.44 10.2 0.2 2.8 2 0 0 2 2 2 1 HAD-hyrolase-like FMN_dh PF01070.13 gi|284165183|ref|YP_003403462.1| - 0.019 13.8 7.0 0.032 13.1 3.9 2.0 1 1 0 1 1 1 0 FMN-dependent dehydrogenase PA PF02225.17 gi|284165183|ref|YP_003403462.1| - 0.052 13.2 3.5 0.44 10.2 0.2 2.7 2 1 0 2 2 2 0 PA domain Glu_synthase PF01645.12 gi|284165183|ref|YP_003403462.1| - 0.059 12.2 1.6 0.084 11.7 0.2 1.7 1 1 1 2 2 2 0 Conserved region in glutamate synthase NMO PF03060.10 gi|284165183|ref|YP_003403462.1| - 0.067 12.3 11.4 0.019 14.1 4.5 2.0 1 1 1 2 2 2 0 Nitronate monooxygenase TIR_2 PF13676.1 gi|284165185|ref|YP_003403464.1| - 1.6e-10 40.9 0.0 2.4e-10 40.4 0.0 1.2 1 0 0 1 1 1 1 TIR domain Nuc_deoxyrib_tr PF05014.10 gi|284165185|ref|YP_003403464.1| - 1.6e-06 28.0 0.0 1.9e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase DUF1863 PF08937.6 gi|284165185|ref|YP_003403464.1| - 4e-06 26.8 0.0 5.8e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 MTH538 TIR-like domain (DUF1863) TIR PF01582.15 gi|284165185|ref|YP_003403464.1| - 0.082 12.3 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 TIR domain Abhydrolase_6 PF12697.2 gi|284165186|ref|YP_003403465.1| - 2.3e-30 106.2 1.7 2.7e-30 105.9 1.2 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|284165186|ref|YP_003403465.1| - 7.7e-15 55.0 0.0 6.4e-14 52.0 0.0 1.9 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|284165186|ref|YP_003403465.1| - 6.6e-09 35.6 0.0 8.1e-08 32.1 0.0 2.0 1 1 0 1 1 1 1 Alpha/beta hydrolase family BATS PF06968.8 gi|284165187|ref|YP_003403466.1| - 2.6e-22 78.4 0.0 5.3e-22 77.4 0.0 1.6 1 0 0 1 1 1 1 Biotin and Thiamin Synthesis associated domain Radical_SAM PF04055.16 gi|284165187|ref|YP_003403466.1| - 3.9e-15 56.4 0.7 2.7e-12 47.1 0.1 2.5 3 0 0 3 3 3 2 Radical SAM superfamily Saccharop_dh PF03435.13 gi|284165188|ref|YP_003403467.1| - 0.00063 18.8 0.1 0.017 14.0 0.0 2.5 2 0 0 2 2 2 1 Saccharopine dehydrogenase GFO_IDH_MocA PF01408.17 gi|284165188|ref|YP_003403467.1| - 0.00099 19.6 0.3 0.42 11.1 0.0 3.1 4 0 0 4 4 4 2 Oxidoreductase family, NAD-binding Rossmann fold ELFV_dehydrog PF00208.16 gi|284165188|ref|YP_003403467.1| - 0.016 14.8 0.0 0.031 13.8 0.0 1.5 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase TrkA_N PF02254.13 gi|284165188|ref|YP_003403467.1| - 0.019 14.9 0.3 0.43 10.5 0.0 2.7 3 0 0 3 3 3 0 TrkA-N domain Aminotran_1_2 PF00155.16 gi|284165189|ref|YP_003403468.1| - 2e-58 198.1 0.0 2.2e-58 197.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|284165189|ref|YP_003403468.1| - 1.1e-05 23.8 0.0 2.6e-05 22.7 0.0 1.5 1 1 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|284165189|ref|YP_003403468.1| - 8.4e-05 21.7 3.0 0.042 12.8 0.3 2.2 2 0 0 2 2 2 2 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|284165189|ref|YP_003403468.1| - 0.0027 16.4 0.0 0.004 15.9 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|284165189|ref|YP_003403468.1| - 0.0054 15.9 2.7 0.01 14.9 1.9 1.6 1 1 0 1 1 1 1 Beta-eliminating lyase Peripla_BP_2 PF01497.13 gi|284165189|ref|YP_003403468.1| - 0.12 11.4 0.0 0.2 10.7 0.0 1.4 1 0 0 1 1 1 0 Periplasmic binding protein Flg_hook PF02120.11 gi|284165189|ref|YP_003403468.1| - 0.12 12.0 0.1 1.6 8.4 0.0 2.3 2 0 0 2 2 2 0 Flagellar hook-length control protein FliK RP1-2 PF12042.3 gi|284165189|ref|YP_003403468.1| - 0.27 10.8 3.3 0.1 12.2 0.3 1.8 2 0 0 2 2 2 0 Tubuliform egg casing silk strands structural domain AAA_26 PF13500.1 gi|284165190|ref|YP_003403469.1| - 1.5e-33 116.1 0.0 1.7e-33 115.8 0.0 1.0 1 0 0 1 1 1 1 AAA domain CbiA PF01656.18 gi|284165190|ref|YP_003403469.1| - 7.8e-07 28.6 0.4 2.3e-06 27.1 0.3 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF1611 PF07755.6 gi|284165190|ref|YP_003403469.1| - 7.5e-05 21.5 2.8 0.00049 18.8 0.2 2.7 1 1 1 3 3 3 1 Protein of unknown function (DUF1611) AAA_19 PF13245.1 gi|284165190|ref|YP_003403469.1| - 0.059 13.1 0.6 0.15 11.8 0.4 1.7 1 0 0 1 1 1 0 Part of AAA domain zf-C2H2_4 PF13894.1 gi|284165191|ref|YP_003403470.1| - 0.00053 20.1 0.2 0.00072 19.7 0.1 1.2 1 0 0 1 1 1 1 C2H2-type zinc finger zf-Di19 PF05605.7 gi|284165191|ref|YP_003403470.1| - 0.0013 18.7 0.1 0.0018 18.3 0.1 1.2 1 0 0 1 1 1 1 Drought induced 19 protein (Di19), zinc-binding zf-C2H2 PF00096.21 gi|284165191|ref|YP_003403470.1| - 0.0046 17.2 0.1 0.0062 16.8 0.1 1.2 1 0 0 1 1 1 1 Zinc finger, C2H2 type AAA PF00004.24 gi|284165192|ref|YP_003403471.1| - 1.5e-10 41.3 0.0 5.8e-10 39.4 0.0 2.1 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|284165192|ref|YP_003403471.1| - 5.1e-07 28.7 0.0 0.0017 17.1 0.0 2.1 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein RuvB_N PF05496.7 gi|284165192|ref|YP_003403471.1| - 1.2e-05 24.4 0.0 2.7e-05 23.3 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_17 PF13207.1 gi|284165192|ref|YP_003403471.1| - 1.9e-05 25.4 2.0 0.00035 21.3 1.3 2.8 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|284165192|ref|YP_003403471.1| - 0.00012 22.2 0.0 0.0085 16.2 0.0 2.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|284165192|ref|YP_003403471.1| - 0.00023 21.1 2.6 0.036 14.0 0.0 3.1 2 1 0 3 3 3 1 AAA ATPase domain Zeta_toxin PF06414.7 gi|284165192|ref|YP_003403471.1| - 0.0019 17.3 0.0 0.0037 16.3 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_33 PF13671.1 gi|284165192|ref|YP_003403471.1| - 0.0049 16.7 0.2 0.017 15.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|284165192|ref|YP_003403471.1| - 0.014 14.5 0.0 0.044 12.9 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function, DUF258 DUF2075 PF09848.4 gi|284165192|ref|YP_003403471.1| - 0.023 13.7 0.3 3.5 6.4 0.0 2.4 1 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_28 PF13521.1 gi|284165192|ref|YP_003403471.1| - 0.024 14.6 0.7 0.062 13.2 0.1 2.1 2 0 0 2 2 1 0 AAA domain AAA_25 PF13481.1 gi|284165192|ref|YP_003403471.1| - 0.031 13.7 3.6 1.1 8.5 0.1 3.1 2 1 1 3 3 3 0 AAA domain TIP49 PF06068.8 gi|284165192|ref|YP_003403471.1| - 0.036 12.7 0.1 6.2 5.4 0.1 2.1 2 0 0 2 2 2 0 TIP49 C-terminus Bac_DnaA PF00308.13 gi|284165192|ref|YP_003403471.1| - 0.036 13.7 0.0 2.7 7.5 0.0 2.6 2 0 0 2 2 2 0 Bacterial dnaA protein AAA_19 PF13245.1 gi|284165192|ref|YP_003403471.1| - 0.059 13.1 0.1 0.3 10.8 0.0 2.3 2 0 0 2 2 1 0 Part of AAA domain FtsK_SpoIIIE PF01580.13 gi|284165192|ref|YP_003403471.1| - 0.059 12.8 0.4 2 7.8 0.0 2.7 3 0 0 3 3 3 0 FtsK/SpoIIIE family AAA_5 PF07728.9 gi|284165192|ref|YP_003403471.1| - 0.078 12.6 0.0 0.18 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) IPT PF01745.11 gi|284165192|ref|YP_003403471.1| - 0.11 11.7 0.0 0.2 10.8 0.0 1.4 1 0 0 1 1 1 0 Isopentenyl transferase AAA_18 PF13238.1 gi|284165192|ref|YP_003403471.1| - 0.11 12.8 0.0 0.11 12.8 0.0 2.7 3 2 0 3 3 3 0 AAA domain IstB_IS21 PF01695.12 gi|284165192|ref|YP_003403471.1| - 0.12 11.7 0.0 0.24 10.7 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein DEAD PF00270.24 gi|284165192|ref|YP_003403471.1| - 0.14 11.6 0.0 14 5.1 0.0 2.6 3 0 0 3 3 3 0 DEAD/DEAH box helicase RNA_helicase PF00910.17 gi|284165192|ref|YP_003403471.1| - 0.15 12.2 0.0 0.38 10.9 0.0 1.8 1 1 0 1 1 1 0 RNA helicase DUF2085 PF09858.4 gi|284165194|ref|YP_003403473.1| - 1.1 9.4 8.5 6.1 6.9 1.3 3.5 2 2 1 3 3 3 0 Predicted membrane protein (DUF2085) TcdA_TcdB_pore PF12920.2 gi|284165194|ref|YP_003403473.1| - 1.8 6.3 4.5 2.7 5.8 3.1 1.3 1 0 0 1 1 1 0 TcdA/TcdB pore forming domain YtkA PF13115.1 gi|284165195|ref|YP_003403474.1| - 0.014 15.6 0.0 18 5.7 0.0 3.5 3 1 0 3 3 3 0 YtkA-like MoCF_biosynth PF00994.19 gi|284165197|ref|YP_003403476.1| - 5.7e-30 103.6 0.1 9.7e-30 102.8 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain Acetate_kinase PF00871.12 gi|284165197|ref|YP_003403476.1| - 0.031 12.8 0.0 0.045 12.2 0.0 1.2 1 0 0 1 1 1 0 Acetokinase family COX15-CtaA PF02628.10 gi|284165198|ref|YP_003403477.1| - 0.0091 14.8 0.7 0.011 14.6 0.5 1.1 1 0 0 1 1 1 1 Cytochrome oxidase assembly protein DUF3353 PF11833.3 gi|284165198|ref|YP_003403477.1| - 0.022 14.2 3.3 0.023 14.1 2.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3353) 7TMR-DISM_7TM PF07695.6 gi|284165198|ref|YP_003403477.1| - 0.039 13.6 4.4 0.046 13.3 3.1 1.1 1 0 0 1 1 1 0 7TM diverse intracellular signalling DUF1352 PF07086.7 gi|284165198|ref|YP_003403477.1| - 0.044 13.4 0.6 0.049 13.2 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1352) DUF4383 PF14325.1 gi|284165198|ref|YP_003403477.1| - 0.054 13.5 0.9 0.064 13.2 0.6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4383) MerC PF03203.9 gi|284165198|ref|YP_003403477.1| - 0.073 13.4 1.4 0.086 13.2 0.9 1.3 1 0 0 1 1 1 0 MerC mercury resistance protein DUF2206 PF09971.4 gi|284165198|ref|YP_003403477.1| - 0.096 11.4 1.8 0.11 11.2 1.3 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2206) DUF998 PF06197.8 gi|284165198|ref|YP_003403477.1| - 0.19 11.0 2.5 0.23 10.7 1.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF998) MatE PF01554.13 gi|284165198|ref|YP_003403477.1| - 0.26 10.8 4.7 0.36 10.4 3.3 1.4 1 1 0 1 1 1 0 MatE Bax1-I PF01027.15 gi|284165198|ref|YP_003403477.1| - 0.27 10.8 7.0 0.31 10.5 4.9 1.1 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 DUF202 PF02656.10 gi|284165198|ref|YP_003403477.1| - 0.74 10.0 5.7 2.2 8.5 0.1 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF202) DUF2628 PF10947.3 gi|284165198|ref|YP_003403477.1| - 10 6.0 6.3 1.7 8.4 0.4 2.0 1 1 0 2 2 2 0 Protein of unknown function (DUF2628) HTH_20 PF12840.2 gi|284165199|ref|YP_003403478.1| - 8.7e-10 38.2 0.3 1.2e-09 37.8 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|284165199|ref|YP_003403478.1| - 3.5e-09 36.1 0.2 5.8e-09 35.4 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|284165199|ref|YP_003403478.1| - 5.1e-06 25.7 0.1 9.4e-06 24.9 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|284165199|ref|YP_003403478.1| - 6.5e-06 25.7 0.0 1.3e-05 24.7 0.0 1.5 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|284165199|ref|YP_003403478.1| - 7.5e-06 25.4 0.1 1.2e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|284165199|ref|YP_003403478.1| - 4.1e-05 23.2 0.1 7.6e-05 22.3 0.0 1.5 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|284165199|ref|YP_003403478.1| - 6.2e-05 22.5 0.2 0.0001 21.8 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|284165199|ref|YP_003403478.1| - 0.00014 21.3 0.3 0.00039 19.8 0.0 1.9 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain MarR PF01047.17 gi|284165199|ref|YP_003403478.1| - 0.00075 19.1 0.0 0.0013 18.3 0.0 1.3 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.12 gi|284165199|ref|YP_003403478.1| - 0.0024 17.3 0.0 0.0031 17.0 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_22 PF13309.1 gi|284165199|ref|YP_003403478.1| - 0.0028 17.3 0.0 0.0082 15.8 0.0 1.7 2 0 0 2 2 2 1 HTH domain HTH_27 PF13463.1 gi|284165199|ref|YP_003403478.1| - 0.0033 17.7 0.1 0.0055 16.9 0.1 1.4 1 1 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.9 gi|284165199|ref|YP_003403478.1| - 0.0096 15.6 0.0 0.013 15.2 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_28 PF13518.1 gi|284165199|ref|YP_003403478.1| - 0.011 15.6 0.0 0.021 14.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_1 PF00126.22 gi|284165199|ref|YP_003403478.1| - 0.011 15.4 0.1 0.021 14.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Fe_dep_repress PF01325.14 gi|284165199|ref|YP_003403478.1| - 0.018 14.9 0.0 0.04 13.8 0.0 1.7 1 1 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_17 PF12728.2 gi|284165199|ref|YP_003403478.1| - 0.019 15.2 0.0 0.038 14.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_ECF PF07638.6 gi|284165199|ref|YP_003403478.1| - 0.022 14.4 0.0 0.029 14.0 0.0 1.2 1 0 0 1 1 1 0 ECF sigma factor ArsR PF09824.4 gi|284165199|ref|YP_003403478.1| - 0.026 13.8 0.0 0.03 13.6 0.0 1.1 1 0 0 1 1 1 0 ArsR transcriptional regulator HTH_8 PF02954.14 gi|284165199|ref|YP_003403478.1| - 0.027 14.0 0.0 0.047 13.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_23 PF13384.1 gi|284165199|ref|YP_003403478.1| - 0.031 13.9 0.0 0.05 13.2 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain FUR PF01475.14 gi|284165199|ref|YP_003403478.1| - 0.031 14.1 0.1 0.067 13.1 0.0 1.6 1 1 0 1 1 1 0 Ferric uptake regulator family Rrf2 PF02082.15 gi|284165199|ref|YP_003403478.1| - 0.034 14.2 0.0 0.051 13.6 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_30 PF13556.1 gi|284165199|ref|YP_003403478.1| - 0.037 13.6 0.3 0.066 12.8 0.0 1.6 2 0 0 2 2 1 0 PucR C-terminal helix-turn-helix domain TetR_N PF00440.18 gi|284165199|ref|YP_003403478.1| - 0.08 12.5 0.0 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_DeoR PF08220.7 gi|284165199|ref|YP_003403478.1| - 0.097 12.2 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_10 PF04967.7 gi|284165199|ref|YP_003403478.1| - 0.1 12.1 0.0 0.2 11.2 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_3 PF01381.17 gi|284165199|ref|YP_003403478.1| - 0.12 12.1 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix HTH_34 PF13601.1 gi|284165199|ref|YP_003403478.1| - 0.13 12.3 0.0 0.2 11.7 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_29 PF13551.1 gi|284165199|ref|YP_003403478.1| - 0.14 12.3 0.0 0.17 12.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix Lar_restr_allev PF14354.1 gi|284165200|ref|YP_003403479.1| - 0.0044 17.2 0.2 0.0056 16.9 0.2 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar RecR PF02132.10 gi|284165200|ref|YP_003403479.1| - 0.0067 15.8 1.5 0.46 9.9 0.2 2.2 2 0 0 2 2 2 2 RecR protein NOB1_Zn_bind PF08772.6 gi|284165200|ref|YP_003403479.1| - 0.014 15.2 0.7 0.5 10.2 0.0 2.1 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-DNL PF05180.7 gi|284165200|ref|YP_003403479.1| - 0.024 14.3 0.8 7 6.4 0.0 2.1 2 0 0 2 2 2 0 DNL zinc finger zf-FPG_IleRS PF06827.9 gi|284165200|ref|YP_003403479.1| - 0.13 11.9 1.6 12 5.6 0.3 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-TFIIB PF13453.1 gi|284165200|ref|YP_003403479.1| - 0.15 11.2 1.4 0.65 9.2 1.0 1.8 1 1 0 1 1 1 0 Transcription factor zinc-finger zf-NADH-PPase PF09297.6 gi|284165200|ref|YP_003403479.1| - 0.24 10.9 2.4 7.9 6.0 0.3 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-tcix PF14952.1 gi|284165200|ref|YP_003403479.1| - 0.73 9.2 4.4 1.1 8.6 0.2 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding PetG PF02529.10 gi|284165201|ref|YP_003403480.1| - 0.027 13.9 2.4 0.027 13.9 1.6 2.1 1 1 1 2 2 2 0 Cytochrome B6-F complex subunit 5 IncA PF04156.9 gi|284165201|ref|YP_003403480.1| - 0.61 9.6 12.2 0.72 9.4 8.5 1.0 1 0 0 1 1 1 0 IncA protein OCD_Mu_crystall PF02423.10 gi|284165202|ref|YP_003403481.1| - 1.2e-62 211.4 1.1 1.7e-62 211.0 0.8 1.2 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family F420_oxidored PF03807.12 gi|284165202|ref|YP_003403481.1| - 9.1e-05 22.8 0.1 0.00019 21.8 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.15 gi|284165202|ref|YP_003403481.1| - 0.0012 18.9 0.0 0.0019 18.2 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.1 gi|284165202|ref|YP_003403481.1| - 0.06 13.5 0.1 0.11 12.7 0.1 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding GFO_IDH_MocA PF01408.17 gi|284165202|ref|YP_003403481.1| - 0.076 13.5 0.1 0.15 12.5 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold TrkA_N PF02254.13 gi|284165203|ref|YP_003403482.1| - 3.2e-33 114.1 10.7 3.4e-18 65.7 0.4 2.9 3 0 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.16 gi|284165203|ref|YP_003403482.1| - 1.2e-18 66.4 1.5 2.3e-08 33.5 0.0 3.2 2 0 0 2 2 2 2 TrkA-C domain Ion_trans_2 PF07885.11 gi|284165203|ref|YP_003403482.1| - 0.0063 16.2 5.5 0.011 15.4 3.8 1.4 1 0 0 1 1 1 1 Ion channel Ion_trans PF00520.26 gi|284165203|ref|YP_003403482.1| - 0.0091 15.2 1.9 0.012 14.8 1.3 1.2 1 0 0 1 1 1 1 Ion transport protein Leader_Thr PF08254.6 gi|284165203|ref|YP_003403482.1| - 0.037 13.6 0.7 0.12 12.0 0.5 1.9 1 0 0 1 1 1 0 Threonine leader peptide DUF502 PF04367.8 gi|284165203|ref|YP_003403482.1| - 0.13 12.0 1.0 0.36 10.6 0.7 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF502) DUF35_N PF12172.3 gi|284165204|ref|YP_003403483.1| - 1.3e-10 40.8 3.3 3e-10 39.6 2.3 1.7 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF35 PF01796.12 gi|284165204|ref|YP_003403483.1| - 1.4e-07 31.6 0.3 3.8e-07 30.2 0.2 1.8 1 0 0 1 1 1 1 DUF35 OB-fold domain ACP_syn_III_C PF08541.5 gi|284165204|ref|YP_003403483.1| - 0.00014 21.7 0.3 0.00091 19.1 0.3 2.3 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal TF_Zn_Ribbon PF08271.7 gi|284165204|ref|YP_003403483.1| - 0.58 9.5 4.4 2.4 7.5 3.1 1.9 1 1 0 1 1 1 0 TFIIB zinc-binding Thiolase_N PF00108.18 gi|284165205|ref|YP_003403484.1| - 1.7e-10 40.3 0.1 1.3e-09 37.4 0.0 2.0 2 0 0 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|284165205|ref|YP_003403484.1| - 1.5e-09 37.2 0.3 7.3e-09 35.1 0.0 2.2 2 1 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|284165205|ref|YP_003403484.1| - 1.8e-06 27.6 2.3 3.6e-06 26.6 1.6 1.4 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.5 gi|284165205|ref|YP_003403484.1| - 0.0082 15.7 1.5 0.17 11.5 0.1 2.8 3 0 0 3 3 3 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DHH PF01368.15 gi|284165206|ref|YP_003403485.1| - 3.8e-13 49.3 0.1 5.7e-13 48.7 0.1 1.3 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|284165206|ref|YP_003403485.1| - 1.8e-12 46.7 0.1 3.3e-12 45.9 0.1 1.4 1 0 0 1 1 1 1 DHHA1 domain HSP20 PF00011.16 gi|284165207|ref|YP_003403486.1| - 1.3e-20 73.1 0.2 2e-12 46.8 0.0 2.1 1 1 1 2 2 2 2 Hsp20/alpha crystallin family DJ-1_PfpI PF01965.19 gi|284165208|ref|YP_003403487.1| - 4.7e-16 58.5 0.3 1.4e-15 56.9 0.2 1.8 1 1 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|284165208|ref|YP_003403487.1| - 0.053 12.8 0.1 0.53 9.5 0.0 2.3 3 0 0 3 3 3 0 Putative amidotransferase AstE_AspA PF04952.9 gi|284165210|ref|YP_003403489.1| - 2.2e-14 53.0 0.0 3.2e-14 52.4 0.0 1.2 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family TAT_signal PF10518.4 gi|284165210|ref|YP_003403489.1| - 0.013 15.4 1.3 0.044 13.7 0.9 2.0 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF3590 PF12148.3 gi|284165212|ref|YP_003403491.1| - 0.051 13.2 0.1 0.061 12.9 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3590) RNA_binding PF01877.12 gi|284165213|ref|YP_003403492.1| - 1.4e-29 102.5 0.7 2.4e-29 101.7 0.1 1.6 2 0 0 2 2 2 1 RNA binding Ribosomal_L17 PF01196.14 gi|284165213|ref|YP_003403492.1| - 0.059 13.9 0.0 0.12 12.9 0.0 1.5 1 1 1 2 2 2 0 Ribosomal protein L17 SlyX PF04102.7 gi|284165213|ref|YP_003403492.1| - 0.13 12.6 0.5 0.13 12.6 0.4 1.9 2 1 0 2 2 2 0 SlyX DUF217 PF02697.9 gi|284165213|ref|YP_003403492.1| - 0.46 10.7 2.2 0.57 10.4 0.1 2.1 3 0 0 3 3 3 0 Uncharacterized ACR, COG1753 TetR_C_6 PF13977.1 gi|284165214|ref|YP_003403493.1| - 1.1e-15 57.5 2.8 1.1e-15 57.5 1.9 1.6 2 0 0 2 2 2 1 Bacterial transcriptional repressor TetR_N PF00440.18 gi|284165214|ref|YP_003403493.1| - 2e-12 46.5 0.1 3.6e-12 45.7 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_5 PF01022.15 gi|284165214|ref|YP_003403493.1| - 0.01 15.4 0.0 0.026 14.1 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_38 PF13936.1 gi|284165214|ref|YP_003403493.1| - 0.1 12.1 0.0 0.37 10.3 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|284165214|ref|YP_003403493.1| - 0.11 11.9 0.0 0.26 10.7 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding FUSC PF04632.7 gi|284165214|ref|YP_003403493.1| - 7 4.9 6.8 8.8 4.6 0.3 2.0 1 1 0 2 2 2 0 Fusaric acid resistance protein family MatE PF01554.13 gi|284165215|ref|YP_003403494.1| - 9.7e-62 207.3 36.7 6.1e-37 126.7 9.0 2.6 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|284165215|ref|YP_003403494.1| - 5.9e-10 39.1 19.5 9e-08 32.0 8.0 4.2 4 1 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Pmp3 PF01679.12 gi|284165215|ref|YP_003403494.1| - 0.023 14.3 2.9 0.076 12.7 0.1 2.7 1 1 1 2 2 2 0 Proteolipid membrane potential modulator YniB PF14002.1 gi|284165215|ref|YP_003403494.1| - 0.038 13.4 0.5 0.094 12.1 0.0 1.8 2 0 0 2 2 2 0 YniB-like protein Na_H_Exchanger PF00999.16 gi|284165216|ref|YP_003403495.1| - 5e-67 226.0 52.5 6.2e-67 225.7 36.4 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Band_7 PF01145.20 gi|284165217|ref|YP_003403496.1| - 3.4e-36 124.8 1.4 3.4e-36 124.8 1.0 1.7 2 0 0 2 2 2 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|284165217|ref|YP_003403496.1| - 0.0074 15.8 0.0 0.013 15.0 0.0 1.4 1 0 0 1 1 1 1 SPFH domain-Band 7 family SdiA-regulated PF06977.6 gi|284165217|ref|YP_003403496.1| - 0.024 13.6 1.8 0.052 12.4 1.3 1.6 1 1 0 1 1 1 0 SdiA-regulated YcaO PF02624.11 gi|284165218|ref|YP_003403497.1| - 2.4e-59 201.4 8.6 3.6e-59 200.9 6.0 1.2 1 0 0 1 1 1 1 YcaO-like family Membralin PF09746.4 gi|284165219|ref|YP_003403498.1| - 0.00034 19.7 0.0 0.0004 19.5 0.0 1.1 1 0 0 1 1 1 1 Tumour-associated protein BNIP3 PF06553.7 gi|284165219|ref|YP_003403498.1| - 0.026 13.9 0.3 0.026 13.9 0.2 1.5 2 0 0 2 2 2 0 BNIP3 BPD_transp_2 PF02653.11 gi|284165219|ref|YP_003403498.1| - 0.033 13.1 0.0 0.043 12.7 0.0 1.1 1 0 0 1 1 1 0 Branched-chain amino acid transport system / permease component PsbQ PF05757.6 gi|284165219|ref|YP_003403498.1| - 0.055 12.8 0.1 0.08 12.3 0.0 1.3 1 0 0 1 1 1 0 Oxygen evolving enhancer protein 3 (PsbQ) TAT_signal PF10518.4 gi|284165219|ref|YP_003403498.1| - 0.06 13.3 1.6 0.11 12.4 1.1 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Cupin_2 PF07883.6 gi|284165220|ref|YP_003403499.1| - 1.8e-09 36.9 3.6 3.1e-09 36.1 1.5 2.0 1 1 1 2 2 2 1 Cupin domain Cupin_1 PF00190.17 gi|284165220|ref|YP_003403499.1| - 2.5e-05 23.7 0.0 3.2e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Cupin Cupin_3 PF05899.7 gi|284165220|ref|YP_003403499.1| - 0.016 14.5 0.3 0.03 13.7 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF861) GPI PF06560.6 gi|284165220|ref|YP_003403499.1| - 0.016 14.1 0.0 0.021 13.8 0.0 1.1 1 0 0 1 1 1 0 Glucose-6-phosphate isomerase (GPI) Trm112p PF03966.11 gi|284165220|ref|YP_003403499.1| - 0.041 14.2 0.2 3.9 7.9 0.0 2.4 1 1 1 2 2 2 0 Trm112p-like protein UPF0547 PF10571.4 gi|284165220|ref|YP_003403499.1| - 0.055 13.1 1.3 0.19 11.4 0.9 1.9 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|284165220|ref|YP_003403499.1| - 0.055 12.9 1.5 0.34 10.4 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|284165220|ref|YP_003403499.1| - 0.22 11.1 1.1 0.58 9.7 0.8 1.8 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|284165220|ref|YP_003403499.1| - 0.23 11.1 1.0 0.7 9.6 0.7 1.9 1 1 0 1 1 1 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|284165220|ref|YP_003403499.1| - 0.35 10.5 4.4 0.11 12.2 1.1 1.6 2 0 0 2 2 2 0 Nudix N-terminal A2L_zn_ribbon PF08792.5 gi|284165220|ref|YP_003403499.1| - 0.4 10.1 1.7 7.8 6.0 0.1 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain RRN7 PF11781.3 gi|284165220|ref|YP_003403499.1| - 1.4 8.4 5.0 4.9 6.7 3.5 2.0 1 1 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 DUF4131 PF13567.1 gi|284165221|ref|YP_003403500.1| - 0.99 8.7 7.0 6.5 6.1 4.9 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) SSF PF00474.12 gi|284165222|ref|YP_003403501.1| - 7.2e-49 166.5 33.4 1e-48 165.9 23.1 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family Amidase02_C PF12123.3 gi|284165223|ref|YP_003403502.1| - 0.057 13.0 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 N-acetylmuramoyl-l-alanine amidase Auxin_resp PF06507.8 gi|284165223|ref|YP_003403502.1| - 0.061 13.1 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 Auxin response factor Cytidylate_kin2 PF13189.1 gi|284165224|ref|YP_003403503.1| - 1e-21 77.6 0.1 6.2e-21 75.0 0.1 1.9 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|284165224|ref|YP_003403503.1| - 5.4e-18 65.5 0.0 6.8e-18 65.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|284165224|ref|YP_003403503.1| - 3.8e-13 50.3 0.5 7.6e-13 49.3 0.3 1.5 1 1 1 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|284165224|ref|YP_003403503.1| - 4.3e-08 33.2 0.0 9.9e-08 32.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|284165224|ref|YP_003403503.1| - 2.3e-06 27.5 0.0 6.3e-06 26.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|284165224|ref|YP_003403503.1| - 1.8e-05 24.9 0.0 3.2e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ADK PF00406.17 gi|284165224|ref|YP_003403503.1| - 6.6e-05 22.8 0.1 0.00018 21.4 0.1 1.9 1 1 0 1 1 1 1 Adenylate kinase CoaE PF01121.15 gi|284165224|ref|YP_003403503.1| - 0.00067 19.0 0.0 0.1 11.9 0.0 2.1 1 1 1 2 2 2 1 Dephospho-CoA kinase SKI PF01202.17 gi|284165224|ref|YP_003403503.1| - 0.0025 17.6 0.2 0.015 15.1 0.2 1.9 1 1 0 1 1 1 1 Shikimate kinase PRK PF00485.13 gi|284165224|ref|YP_003403503.1| - 0.0047 16.4 0.0 0.11 12.0 0.0 2.1 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family AAA_5 PF07728.9 gi|284165224|ref|YP_003403503.1| - 0.0097 15.6 0.0 0.016 14.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_19 PF13245.1 gi|284165224|ref|YP_003403503.1| - 0.013 15.2 0.7 0.03 14.0 0.0 1.9 2 0 0 2 2 2 0 Part of AAA domain AAA_22 PF13401.1 gi|284165224|ref|YP_003403503.1| - 0.035 14.2 0.0 0.067 13.3 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|284165224|ref|YP_003403503.1| - 0.046 13.6 0.0 0.098 12.6 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain RHH_4 PF13467.1 gi|284165224|ref|YP_003403503.1| - 0.097 12.5 0.2 0.61 10.0 0.1 2.1 1 1 1 2 2 2 0 Ribbon-helix-helix domain RNA_helicase PF00910.17 gi|284165224|ref|YP_003403503.1| - 0.14 12.3 0.0 0.21 11.7 0.0 1.4 1 0 0 1 1 1 0 RNA helicase NACHT PF05729.7 gi|284165224|ref|YP_003403503.1| - 0.15 11.7 0.0 0.38 10.3 0.0 1.6 1 1 0 2 2 2 0 NACHT domain AMP-binding PF00501.23 gi|284165225|ref|YP_003403504.1| - 3.9e-86 289.0 0.0 5.1e-86 288.6 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|284165225|ref|YP_003403504.1| - 1.3e-18 67.7 3.9 9.3e-18 64.9 0.4 2.8 3 0 0 3 3 3 1 AMP-binding enzyme C-terminal domain ATP-sulfurylase PF01747.12 gi|284165225|ref|YP_003403504.1| - 0.14 11.4 0.0 0.59 9.3 0.0 1.9 2 0 0 2 2 2 0 ATP-sulfurylase IMPDH PF00478.20 gi|284165226|ref|YP_003403505.1| - 3.2e-130 434.1 5.2 3.6e-130 433.9 3.6 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.23 gi|284165226|ref|YP_003403505.1| - 2.1e-26 91.4 7.2 9.6e-14 50.9 0.4 3.0 3 0 0 3 3 3 2 CBS domain NMO PF03060.10 gi|284165226|ref|YP_003403505.1| - 2.2e-14 53.3 1.2 2.1e-07 30.4 0.2 2.4 2 0 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.13 gi|284165226|ref|YP_003403505.1| - 7.7e-10 38.1 2.0 1.7e-09 37.0 1.4 1.6 1 0 0 1 1 1 1 FMN-dependent dehydrogenase His_biosynth PF00977.16 gi|284165226|ref|YP_003403505.1| - 1.8e-05 24.1 1.7 3.5e-05 23.1 1.2 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.9 gi|284165226|ref|YP_003403505.1| - 2.4e-05 23.5 5.8 5.8e-05 22.2 0.9 2.3 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG Glu_synthase PF01645.12 gi|284165226|ref|YP_003403505.1| - 7.6e-05 21.7 4.1 0.00013 21.0 2.0 1.8 2 0 0 2 2 2 1 Conserved region in glutamate synthase DHO_dh PF01180.16 gi|284165226|ref|YP_003403505.1| - 0.0001 21.3 1.2 0.00019 20.5 0.8 1.4 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.12 gi|284165226|ref|YP_003403505.1| - 0.00053 18.9 0.1 0.0011 17.8 0.1 1.5 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) PcrB PF01884.12 gi|284165226|ref|YP_003403505.1| - 0.014 14.6 3.1 0.023 13.9 0.3 2.4 2 0 0 2 2 2 0 PcrB family Big_2 PF02368.13 gi|284165229|ref|YP_003403508.1| - 0.012 15.5 0.0 0.029 14.2 0.0 1.6 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 2) TrmB PF01978.14 gi|284165230|ref|YP_003403509.1| - 1.7e-17 62.8 0.1 1.8e-16 59.6 0.0 2.6 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.3 gi|284165230|ref|YP_003403509.1| - 1.5e-08 33.9 0.0 2.2e-08 33.3 0.0 1.3 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB HTH_27 PF13463.1 gi|284165230|ref|YP_003403509.1| - 0.0034 17.6 0.7 0.11 12.8 0.0 3.0 2 1 1 3 3 3 1 Winged helix DNA-binding domain HRDC PF00570.18 gi|284165230|ref|YP_003403509.1| - 0.0046 16.6 0.1 4.8 6.9 0.0 3.3 3 0 0 3 3 3 1 HRDC domain MarR_2 PF12802.2 gi|284165230|ref|YP_003403509.1| - 0.01 15.4 0.1 0.031 13.9 0.0 1.8 2 0 0 2 2 2 0 MarR family ESCRT-II PF05871.7 gi|284165230|ref|YP_003403509.1| - 0.053 13.4 0.1 0.086 12.7 0.0 1.3 1 0 0 1 1 1 0 ESCRT-II complex subunit HTH_IclR PF09339.5 gi|284165230|ref|YP_003403509.1| - 0.057 13.0 0.3 3 7.5 0.0 2.5 2 0 0 2 2 2 0 IclR helix-turn-helix domain Zot PF05707.7 gi|284165230|ref|YP_003403509.1| - 0.067 12.6 0.5 0.2 11.0 0.0 1.9 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) HTH_10 PF04967.7 gi|284165231|ref|YP_003403510.1| - 1.8e-17 62.6 0.1 3.3e-17 61.7 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|284165231|ref|YP_003403510.1| - 0.00015 21.3 0.1 0.00032 20.3 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|284165231|ref|YP_003403510.1| - 0.0006 19.1 0.0 0.0011 18.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding UPF0122 PF04297.9 gi|284165231|ref|YP_003403510.1| - 0.0064 16.4 0.0 0.02 14.9 0.0 1.7 2 0 0 2 2 2 1 Putative helix-turn-helix protein, YlxM / p13 like HTH_AsnC-type PF13404.1 gi|284165231|ref|YP_003403510.1| - 0.0075 15.7 0.6 0.018 14.5 0.4 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_3 PF01381.17 gi|284165231|ref|YP_003403510.1| - 0.071 12.9 0.1 0.18 11.6 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix HTH_11 PF08279.7 gi|284165231|ref|YP_003403510.1| - 0.11 12.2 0.0 0.26 10.9 0.0 1.7 1 0 0 1 1 1 0 HTH domain GntR PF00392.16 gi|284165231|ref|YP_003403510.1| - 0.11 11.9 0.5 0.72 9.3 0.1 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_30 PF13556.1 gi|284165231|ref|YP_003403510.1| - 0.13 11.8 0.3 1.4 8.5 0.3 2.4 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain SPW PF03779.9 gi|284165232|ref|YP_003403511.1| - 1.4e-09 37.2 21.9 3.1e-08 32.8 4.8 2.2 2 0 0 2 2 2 2 SPW repeat Bax1-I PF01027.15 gi|284165232|ref|YP_003403511.1| - 0.058 13.0 6.3 0.073 12.6 4.4 1.1 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 Response_reg PF00072.19 gi|284165233|ref|YP_003403512.1| - 2.9e-12 46.5 0.0 3.4e-12 46.3 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain DZR PF12773.2 gi|284165234|ref|YP_003403513.1| - 0.0044 16.8 2.7 0.0044 16.8 1.9 1.7 1 1 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.4 gi|284165234|ref|YP_003403513.1| - 0.0079 15.8 3.5 0.39 10.4 0.1 2.3 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 Terminase_GpA PF05876.7 gi|284165234|ref|YP_003403513.1| - 0.018 13.4 0.6 0.019 13.3 0.4 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) A2L_zn_ribbon PF08792.5 gi|284165234|ref|YP_003403513.1| - 0.021 14.2 3.5 0.44 10.0 0.4 2.6 2 1 0 2 2 2 0 A2L zinc ribbon domain DUF1272 PF06906.6 gi|284165234|ref|YP_003403513.1| - 0.023 14.5 3.7 0.18 11.6 2.6 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) DNA_ligase_ZBD PF03119.11 gi|284165234|ref|YP_003403513.1| - 0.029 14.0 0.3 0.029 14.0 0.2 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-MIZ PF02891.15 gi|284165234|ref|YP_003403513.1| - 0.03 13.8 2.0 0.042 13.3 1.4 1.2 1 0 0 1 1 1 0 MIZ/SP-RING zinc finger zf-ribbon_3 PF13248.1 gi|284165234|ref|YP_003403513.1| - 0.04 13.1 7.9 0.36 10.1 0.7 2.8 3 1 0 3 3 3 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|284165234|ref|YP_003403513.1| - 0.042 13.6 3.4 3.7 7.4 0.3 2.4 2 0 0 2 2 2 0 PhnA Zinc-Ribbon OrfB_Zn_ribbon PF07282.6 gi|284165234|ref|YP_003403513.1| - 0.043 13.4 1.7 4.2 7.0 0.0 2.2 1 1 1 2 2 2 0 Putative transposase DNA-binding domain HypA PF01155.14 gi|284165234|ref|YP_003403513.1| - 0.059 13.0 0.3 0.075 12.7 0.2 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family GFA PF04828.9 gi|284165234|ref|YP_003403513.1| - 0.06 13.2 2.3 0.3 11.0 0.1 2.1 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme Lar_restr_allev PF14354.1 gi|284165234|ref|YP_003403513.1| - 0.067 13.5 1.9 0.088 13.1 1.3 1.3 1 0 0 1 1 1 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.5 gi|284165234|ref|YP_003403513.1| - 0.073 13.0 3.0 1 9.3 0.1 2.4 2 1 1 3 3 3 0 Zinc ribbon domain zf-LITAF-like PF10601.4 gi|284165234|ref|YP_003403513.1| - 0.076 12.8 0.5 0.42 10.4 0.1 2.0 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|284165234|ref|YP_003403513.1| - 0.076 12.3 4.2 0.49 9.7 2.9 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding NOB1_Zn_bind PF08772.6 gi|284165234|ref|YP_003403513.1| - 0.13 12.1 1.0 6.6 6.6 0.0 2.2 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Zn_Tnp_IS91 PF14319.1 gi|284165234|ref|YP_003403513.1| - 0.14 11.6 0.7 0.2 11.1 0.5 1.2 1 0 0 1 1 1 0 Transposase zinc-binding domain zinc_ribbon_2 PF13240.1 gi|284165234|ref|YP_003403513.1| - 0.19 11.2 10.4 0.9 9.1 0.1 2.9 3 1 0 3 3 2 0 zinc-ribbon domain C1_3 PF07649.7 gi|284165234|ref|YP_003403513.1| - 0.2 11.7 2.8 1.2 9.2 0.4 2.3 2 0 0 2 2 2 0 C1-like domain Nudix_N_2 PF14803.1 gi|284165234|ref|YP_003403513.1| - 0.22 11.2 7.6 2.1 8.0 0.5 3.1 2 1 0 2 2 2 0 Nudix N-terminal DNA_RNApol_7kD PF03604.8 gi|284165234|ref|YP_003403513.1| - 0.24 10.9 3.3 3.9 7.0 0.1 2.6 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zf-HIT PF04438.11 gi|284165234|ref|YP_003403513.1| - 0.45 10.2 7.3 0.13 11.9 1.8 2.1 2 1 0 2 2 2 0 HIT zinc finger Zn_Tnp_IS1595 PF12760.2 gi|284165234|ref|YP_003403513.1| - 0.46 10.3 4.1 1.5 8.6 0.4 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Ogr_Delta PF04606.7 gi|284165234|ref|YP_003403513.1| - 1.6 8.4 4.2 2.5 7.8 0.4 2.4 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger TFIIS_C PF01096.13 gi|284165234|ref|YP_003403513.1| - 3.2 7.4 5.7 23 4.7 0.0 2.9 2 1 2 4 4 4 0 Transcription factor S-II (TFIIS) zf-tcix PF14952.1 gi|284165234|ref|YP_003403513.1| - 7.6 5.9 5.9 1.3 8.3 0.4 2.3 3 0 0 3 3 2 0 Putative treble-clef, zinc-finger, Zn-binding MarR_2 PF12802.2 gi|284165235|ref|YP_003403514.1| - 5.1e-05 22.8 0.1 6.3e-05 22.5 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.1 gi|284165235|ref|YP_003403514.1| - 0.00016 21.3 0.0 0.00028 20.6 0.0 1.4 1 1 0 1 1 1 1 Winged helix-turn-helix Mrr_N PF14338.1 gi|284165235|ref|YP_003403514.1| - 0.0019 18.2 0.0 0.0027 17.7 0.0 1.4 1 1 0 1 1 1 1 Mrr N-terminal domain HTH_24 PF13412.1 gi|284165235|ref|YP_003403514.1| - 0.0034 16.7 0.0 0.0046 16.3 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|284165235|ref|YP_003403514.1| - 0.0042 17.3 0.2 0.0052 17.0 0.2 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|284165235|ref|YP_003403514.1| - 0.014 15.2 0.1 0.039 13.7 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.15 gi|284165235|ref|YP_003403514.1| - 0.018 15.1 0.0 0.14 12.2 0.0 2.0 1 1 1 2 2 2 0 Transcriptional regulator PadR PF03551.9 gi|284165235|ref|YP_003403514.1| - 0.041 13.6 0.2 3.7 7.3 0.1 2.2 1 1 1 2 2 2 0 Transcriptional regulator PadR-like family HTH_5 PF01022.15 gi|284165235|ref|YP_003403514.1| - 0.082 12.5 0.0 0.17 11.5 0.0 1.6 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family HemN_C PF06969.11 gi|284165235|ref|YP_003403514.1| - 0.098 12.7 0.4 0.64 10.1 0.1 2.0 1 1 1 2 2 2 0 HemN C-terminal domain HTH_20 PF12840.2 gi|284165236|ref|YP_003403515.1| - 0.00029 20.5 0.1 0.00068 19.3 0.1 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|284165236|ref|YP_003403515.1| - 0.031 13.8 0.3 0.14 11.7 0.0 2.2 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|284165236|ref|YP_003403515.1| - 0.11 12.2 0.0 0.82 9.3 0.0 2.2 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|284165236|ref|YP_003403515.1| - 0.11 11.9 0.1 0.37 10.2 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding DUF1628 PF07790.6 gi|284165237|ref|YP_003403516.1| - 2.5e-16 60.1 5.4 6.4e-16 58.8 3.8 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF1628) Arch_flagellin PF01917.11 gi|284165237|ref|YP_003403516.1| - 0.018 14.6 3.6 0.026 14.1 2.5 1.2 1 0 0 1 1 1 0 Archaebacterial flagellin DUF1628 PF07790.6 gi|284165238|ref|YP_003403517.1| - 3.6e-16 59.6 3.5 3.6e-16 59.6 2.4 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF1628) BNR PF02012.15 gi|284165238|ref|YP_003403517.1| - 1.4 9.0 4.4 4.3 7.5 0.5 3.4 3 0 0 3 3 3 0 BNR/Asp-box repeat Arch_flagellin PF01917.11 gi|284165238|ref|YP_003403517.1| - 8.4 5.9 8.1 23 4.5 5.6 1.7 1 1 0 1 1 1 0 Archaebacterial flagellin DZR PF12773.2 gi|284165242|ref|YP_003403521.1| - 0.035 13.9 4.6 0.092 12.5 3.2 1.7 1 1 0 1 1 1 0 Double zinc ribbon Laminin_N PF00055.12 gi|284165242|ref|YP_003403521.1| - 0.064 12.2 0.2 0.07 12.1 0.1 1.0 1 0 0 1 1 1 0 Laminin N-terminal (Domain VI) PolC_DP2 PF03833.8 gi|284165242|ref|YP_003403521.1| - 0.13 9.9 0.9 0.14 9.7 0.6 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 OrfB_Zn_ribbon PF07282.6 gi|284165242|ref|YP_003403521.1| - 0.21 11.2 1.4 0.3 10.7 1.0 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|284165242|ref|YP_003403521.1| - 0.43 9.8 4.7 0.38 10.0 0.9 2.1 2 1 0 2 2 2 0 zinc-ribbon domain Fer4_2 PF12797.2 gi|284165242|ref|YP_003403521.1| - 0.52 10.3 3.4 2.4 8.2 0.1 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Nudix_N_2 PF14803.1 gi|284165242|ref|YP_003403521.1| - 0.58 9.9 9.9 0.12 12.0 4.0 2.0 2 1 0 2 2 2 0 Nudix N-terminal zinc_ribbon_2 PF13240.1 gi|284165242|ref|YP_003403521.1| - 1 8.9 7.0 0.19 11.2 1.4 2.2 2 1 0 2 2 2 0 zinc-ribbon domain zf-LITAF-like PF10601.4 gi|284165242|ref|YP_003403521.1| - 2.8 7.8 5.1 13 5.7 0.2 2.1 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain HTH_IclR PF09339.5 gi|284165243|ref|YP_003403522.1| - 0.0033 16.9 0.1 0.0064 16.0 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain Mrr_N PF14338.1 gi|284165243|ref|YP_003403522.1| - 0.0075 16.3 0.0 0.012 15.6 0.0 1.3 1 0 0 1 1 1 1 Mrr N-terminal domain HTH_20 PF12840.2 gi|284165243|ref|YP_003403522.1| - 0.013 15.3 0.1 0.03 14.1 0.1 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|284165243|ref|YP_003403522.1| - 0.035 13.7 0.2 0.072 12.7 0.1 1.5 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.1 gi|284165243|ref|YP_003403522.1| - 0.058 12.7 0.0 0.12 11.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Peptidase_M50 PF02163.17 gi|284165244|ref|YP_003403523.1| - 0.6 9.0 5.7 0.12 11.3 1.5 1.6 2 0 0 2 2 2 0 Peptidase family M50 Acetyltransf_4 PF13420.1 gi|284165245|ref|YP_003403524.1| - 2e-15 57.0 0.0 2.8e-15 56.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|284165245|ref|YP_003403524.1| - 1.8e-12 47.1 0.0 3.5e-12 46.1 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.1 gi|284165245|ref|YP_003403524.1| - 7.2e-09 35.9 0.1 1.2e-08 35.2 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|284165245|ref|YP_003403524.1| - 8.3e-07 29.1 0.0 1.4e-06 28.4 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|284165245|ref|YP_003403524.1| - 8.6e-06 25.8 0.0 2e-05 24.6 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain HTH_20 PF12840.2 gi|284165245|ref|YP_003403524.1| - 0.0052 16.5 0.0 0.012 15.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Acetyltransf_9 PF13527.1 gi|284165245|ref|YP_003403524.1| - 0.0079 16.0 0.1 0.019 14.8 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|284165245|ref|YP_003403524.1| - 0.061 13.2 0.0 0.16 11.8 0.0 1.8 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase UBA_4 PF14555.1 gi|284165245|ref|YP_003403524.1| - 0.12 11.9 0.0 0.24 10.9 0.0 1.5 1 0 0 1 1 1 0 UBA-like domain DUF3366 PF11846.3 gi|284165246|ref|YP_003403525.1| - 0.068 13.0 1.0 0.4 10.5 0.7 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF3366) Fer2 PF00111.22 gi|284165247|ref|YP_003403526.1| - 1e-08 34.8 0.6 2.1e-08 33.8 0.4 1.5 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|284165247|ref|YP_003403526.1| - 0.00069 19.3 0.5 0.0046 16.7 0.4 2.2 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|284165247|ref|YP_003403526.1| - 0.021 14.6 0.8 0.036 13.9 0.6 1.5 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain MMR_HSR1_C PF08438.5 gi|284165248|ref|YP_003403527.1| - 5.2e-30 103.8 0.0 8.2e-30 103.2 0.0 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|284165248|ref|YP_003403527.1| - 6.1e-17 61.6 0.0 1.8e-16 60.1 0.0 1.9 1 1 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|284165248|ref|YP_003403527.1| - 2.6e-12 46.3 0.0 6.1e-12 45.1 0.0 1.7 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|284165248|ref|YP_003403527.1| - 8.9e-10 38.0 0.1 6.6e-07 28.7 0.0 3.1 3 0 0 3 3 3 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|284165248|ref|YP_003403527.1| - 0.0098 15.3 0.1 0.36 10.2 0.0 2.7 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain UbiA PF01040.13 gi|284165250|ref|YP_003403529.1| - 2e-12 46.9 25.5 5e-12 45.5 17.7 1.6 1 1 0 1 1 1 1 UbiA prenyltransferase family FUSC-like PF12805.2 gi|284165250|ref|YP_003403529.1| - 0.024 13.5 0.1 0.024 13.5 0.1 2.3 2 0 0 2 2 2 0 FUSC-like inner membrane protein yccS TPP_enzyme_N PF02776.13 gi|284165251|ref|YP_003403530.1| - 3.7e-47 159.9 0.1 6.7e-46 155.9 0.1 2.6 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|284165251|ref|YP_003403530.1| - 1.3e-25 89.7 0.0 3.3e-25 88.4 0.0 1.8 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|284165251|ref|YP_003403530.1| - 2.8e-20 72.4 0.3 6.6e-20 71.2 0.2 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain PAS_4 PF08448.5 gi|284165252|ref|YP_003403531.1| - 1.4e-15 57.3 0.7 1.4e-15 57.3 0.5 2.0 2 0 0 2 2 2 1 PAS fold HisKA PF00512.20 gi|284165252|ref|YP_003403531.1| - 3e-15 55.9 0.2 6.5e-15 54.8 0.1 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c PF02518.21 gi|284165252|ref|YP_003403531.1| - 9.1e-12 44.6 0.9 4.2e-11 42.5 0.6 2.0 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|284165252|ref|YP_003403531.1| - 8e-11 41.7 0.0 1.7e-10 40.7 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|284165252|ref|YP_003403531.1| - 9.5e-10 38.7 0.0 7.1e-09 35.9 0.0 2.1 2 0 0 2 2 2 1 PAS domain PAS_8 PF13188.1 gi|284165252|ref|YP_003403531.1| - 2.2e-05 24.1 0.2 9.7e-05 22.0 0.1 2.1 1 0 0 1 1 1 1 PAS domain PAS_7 PF12860.2 gi|284165252|ref|YP_003403531.1| - 6.7e-05 22.8 1.0 0.00046 20.1 0.1 2.6 2 1 0 2 2 2 1 PAS fold PepSY_2 PF13670.1 gi|284165252|ref|YP_003403531.1| - 0.022 14.6 0.9 6.3 6.7 0.4 2.8 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain HATPase_c_2 PF13581.1 gi|284165252|ref|YP_003403531.1| - 0.059 13.1 0.1 0.21 11.3 0.1 2.1 1 1 0 1 1 1 0 Histidine kinase-like ATPase domain PAS_10 PF13596.1 gi|284165252|ref|YP_003403531.1| - 0.071 13.3 0.0 0.13 12.4 0.0 1.5 1 0 0 1 1 1 0 PAS domain FAD-oxidase_C PF02913.14 gi|284165253|ref|YP_003403532.1| - 1.1e-56 192.0 0.0 1.7e-56 191.2 0.0 1.3 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|284165253|ref|YP_003403532.1| - 7.9e-41 138.7 0.1 1.5e-40 137.9 0.1 1.5 1 0 0 1 1 1 1 FAD binding domain AP_endonuc_2 PF01261.19 gi|284165253|ref|YP_003403532.1| - 0.0081 15.4 0.2 0.085 12.1 0.0 2.6 3 1 1 4 4 4 1 Xylose isomerase-like TIM barrel DUF1469 PF07332.6 gi|284165253|ref|YP_003403532.1| - 0.13 11.9 0.2 0.23 11.2 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) DUF2379 PF09543.5 gi|284165254|ref|YP_003403533.1| - 0.11 12.4 1.6 0.12 12.2 1.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2379) Peptidase_M14 PF00246.19 gi|284165255|ref|YP_003403534.1| - 9.8e-12 45.0 0.0 1.7e-11 44.3 0.0 1.3 1 0 0 1 1 1 1 Zinc carboxypeptidase Bac_luciferase PF00296.15 gi|284165256|ref|YP_003403535.1| - 6.9e-51 173.1 9.5 1.3e-50 172.2 6.6 1.3 1 1 0 1 1 1 1 Luciferase-like monooxygenase HTH_20 PF12840.2 gi|284165257|ref|YP_003403536.1| - 0.00011 21.8 0.7 0.00045 19.9 0.5 2.1 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|284165257|ref|YP_003403536.1| - 0.0068 15.9 0.1 0.034 13.7 0.0 2.0 1 1 1 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|284165257|ref|YP_003403536.1| - 0.0097 15.2 0.1 0.05 13.0 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding ADH_zinc_N PF00107.21 gi|284165258|ref|YP_003403537.1| - 1.7e-16 59.9 0.1 2.9e-16 59.1 0.1 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|284165258|ref|YP_003403537.1| - 1.2e-12 47.5 0.0 9.7e-11 41.4 0.0 2.3 1 1 1 2 2 2 2 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.1 gi|284165258|ref|YP_003403537.1| - 1.1e-11 45.6 1.1 2.1e-11 44.7 0.1 1.9 2 0 0 2 2 2 1 Zinc-binding dehydrogenase DUF2493 PF10686.4 gi|284165258|ref|YP_003403537.1| - 0.19 11.2 4.8 0.18 11.4 2.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2493) DJ-1_PfpI PF01965.19 gi|284165259|ref|YP_003403538.1| - 1.1e-39 135.2 0.0 1.5e-39 134.7 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|284165259|ref|YP_003403538.1| - 3e-08 33.1 0.0 3.7e-08 32.8 0.0 1.2 1 0 0 1 1 1 1 Putative amidotransferase GATase_3 PF07685.9 gi|284165259|ref|YP_003403538.1| - 0.02 14.5 0.0 0.043 13.4 0.0 1.6 2 0 0 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain Aminotran_1_2 PF00155.16 gi|284165261|ref|YP_003403540.1| - 1.8e-61 208.1 0.0 2e-61 207.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|284165261|ref|YP_003403540.1| - 3.9e-12 45.8 0.1 8.4e-12 44.8 0.0 1.5 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|284165261|ref|YP_003403540.1| - 9.8e-11 41.3 0.0 3.1e-10 39.6 0.0 1.7 2 0 0 2 2 2 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|284165261|ref|YP_003403540.1| - 3.4e-08 32.6 0.0 4.5e-08 32.2 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|284165261|ref|YP_003403540.1| - 2e-07 29.6 0.0 2.8e-07 29.1 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_MocR PF12897.2 gi|284165261|ref|YP_003403540.1| - 0.0061 15.1 0.2 0.015 13.9 0.0 1.6 2 0 0 2 2 2 1 Alanine-glyoxylate amino-transferase DUF1902 PF08972.6 gi|284165262|ref|YP_003403541.1| - 0.13 11.8 1.8 11 5.7 0.1 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1902) TPP_enzyme_C PF02775.16 gi|284165263|ref|YP_003403542.1| - 2.3e-32 111.7 0.3 3.4e-32 111.1 0.2 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|284165263|ref|YP_003403542.1| - 3e-16 59.1 0.4 5.5e-16 58.2 0.2 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal POR_N PF01855.14 gi|284165264|ref|YP_003403543.1| - 1.2e-57 195.0 0.2 1.9e-57 194.4 0.1 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|284165264|ref|YP_003403543.1| - 2e-42 145.0 0.2 4.7e-42 143.8 0.1 1.6 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.13 gi|284165264|ref|YP_003403543.1| - 2.2e-06 27.2 0.2 4.1e-06 26.4 0.1 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.15 gi|284165264|ref|YP_003403543.1| - 0.0025 17.7 0.0 0.0062 16.4 0.0 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain FAD_binding_6 PF00970.19 gi|284165265|ref|YP_003403544.1| - 1.2e-11 44.5 0.0 2.9e-11 43.3 0.0 1.6 1 1 0 1 1 1 1 Oxidoreductase FAD-binding domain PALP PF00291.20 gi|284165265|ref|YP_003403544.1| - 0.00095 18.4 0.1 0.0016 17.7 0.0 1.6 2 0 0 2 2 2 1 Pyridoxal-phosphate dependent enzyme Peripla_BP_4 PF13407.1 gi|284165265|ref|YP_003403544.1| - 0.0017 17.7 0.1 0.0034 16.7 0.1 1.5 2 0 0 2 2 2 1 Periplasmic binding protein domain FAD_binding_9 PF08021.6 gi|284165265|ref|YP_003403544.1| - 0.0027 17.6 0.0 0.0043 16.9 0.0 1.4 1 0 0 1 1 1 1 Siderophore-interacting FAD-binding domain adh_short_C2 PF13561.1 gi|284165265|ref|YP_003403544.1| - 0.13 11.9 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase PLAC9 PF15205.1 gi|284165266|ref|YP_003403545.1| - 0.093 13.0 0.2 0.64 10.3 0.0 2.0 2 0 0 2 2 2 0 Placenta-specific protein 9 Glyoxalase_4 PF13669.1 gi|284165267|ref|YP_003403546.1| - 2.2e-19 69.4 0.1 2.6e-19 69.2 0.1 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase PF00903.20 gi|284165267|ref|YP_003403546.1| - 3.1e-13 49.8 0.2 3.6e-13 49.6 0.1 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|284165267|ref|YP_003403546.1| - 2.8e-11 43.9 0.1 3.3e-11 43.7 0.1 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_3 PF13468.1 gi|284165267|ref|YP_003403546.1| - 8.1e-07 29.1 0.6 1e-06 28.8 0.4 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain Aldo_ket_red PF00248.16 gi|284165268|ref|YP_003403547.1| - 3.6e-67 226.1 0.0 4.3e-67 225.9 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family GSDH PF07995.6 gi|284165269|ref|YP_003403548.1| - 1.2e-30 106.7 0.9 5.5e-16 58.5 0.1 2.5 3 0 0 3 3 3 2 Glucose / Sorbosone dehydrogenase Copper-bind PF00127.15 gi|284165269|ref|YP_003403548.1| - 4e-10 39.7 0.1 1.5e-09 37.9 0.0 2.0 2 0 0 2 2 2 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|284165269|ref|YP_003403548.1| - 0.011 15.6 0.0 0.022 14.6 0.0 1.5 1 0 0 1 1 1 0 Cupredoxin-like domain NHL PF01436.16 gi|284165269|ref|YP_003403548.1| - 0.16 11.9 1.2 1.5 8.9 0.0 3.2 3 0 0 3 3 3 0 NHL repeat TAT_signal PF10518.4 gi|284165269|ref|YP_003403548.1| - 5.3 7.3 15.1 0.025 14.5 4.2 2.0 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence MM_CoA_mutase PF01642.17 gi|284165270|ref|YP_003403549.1| - 2e-209 696.0 0.7 2.3e-209 695.8 0.5 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase FA_desaturase PF00487.19 gi|284165271|ref|YP_003403550.1| - 0.013 14.9 0.3 0.014 14.8 0.2 1.0 1 0 0 1 1 1 0 Fatty acid desaturase Acetyltransf_1 PF00583.19 gi|284165272|ref|YP_003403551.1| - 4.9e-09 36.0 0.2 8.1e-09 35.3 0.2 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_CG PF14542.1 gi|284165272|ref|YP_003403551.1| - 0.013 15.3 0.1 0.028 14.3 0.0 1.6 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_10 PF13673.1 gi|284165272|ref|YP_003403551.1| - 0.02 14.9 0.1 0.032 14.3 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|284165272|ref|YP_003403551.1| - 0.12 12.5 0.0 0.19 11.9 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Peptidase_M48 PF01435.13 gi|284165273|ref|YP_003403552.1| - 9.9e-28 97.2 0.0 1.4e-27 96.7 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|284165273|ref|YP_003403552.1| - 0.0052 15.7 0.0 0.0081 15.1 0.0 1.2 1 0 0 1 1 1 1 BlaR1 peptidase M56 SprT-like PF10263.4 gi|284165273|ref|YP_003403552.1| - 0.059 13.0 0.0 0.084 12.5 0.0 1.2 1 0 0 1 1 1 0 SprT-like family SyrA PF11089.3 gi|284165273|ref|YP_003403552.1| - 4.5 7.1 8.9 0.7 9.7 0.6 2.7 3 0 0 3 3 3 0 Exopolysaccharide production repressor YyzF PF14116.1 gi|284165275|ref|YP_003403554.1| - 1.4 8.9 9.3 2.8 7.9 0.0 3.4 4 0 0 4 4 4 0 YyzF-like protein HAD_2 PF13419.1 gi|284165276|ref|YP_003403555.1| - 8.6e-18 65.1 0.0 1e-17 64.9 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|284165276|ref|YP_003403555.1| - 1.6e-11 43.7 0.2 4e-11 42.4 0.1 1.7 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|284165276|ref|YP_003403555.1| - 3.8e-08 34.0 0.0 2.6e-06 27.9 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.7 gi|284165276|ref|YP_003403555.1| - 0.0025 17.0 0.0 0.14 11.3 0.0 2.7 2 1 0 2 2 2 1 Putative Phosphatase TPR_16 PF13432.1 gi|284165276|ref|YP_003403555.1| - 0.023 15.3 0.0 0.082 13.6 0.0 2.0 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_14 PF13428.1 gi|284165276|ref|YP_003403555.1| - 0.07 13.7 0.6 0.3 11.8 0.1 2.4 2 0 0 2 2 2 0 Tetratricopeptide repeat DUF892 PF05974.7 gi|284165277|ref|YP_003403556.1| - 3.5e-28 98.4 9.5 4.1e-28 98.1 6.6 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF892) FlgN PF05130.7 gi|284165277|ref|YP_003403556.1| - 0.0093 16.2 5.5 0.016 15.4 1.2 2.5 1 1 1 2 2 2 1 FlgN protein PhaP_Bmeg PF09602.5 gi|284165277|ref|YP_003403556.1| - 0.092 12.5 0.6 0.28 11.0 0.1 1.7 1 1 1 2 2 2 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) DUF2383 PF09537.5 gi|284165277|ref|YP_003403556.1| - 0.16 12.2 4.3 2 8.6 1.2 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF2383) Kinesin-relat_1 PF12711.2 gi|284165277|ref|YP_003403556.1| - 3.7 8.0 8.2 9.9 6.6 0.1 2.6 3 0 0 3 3 3 0 Kinesin motor Pyr_redox_2 PF07992.9 gi|284165278|ref|YP_003403557.1| - 2.8e-20 73.0 1.3 5.7e-15 55.7 0.0 2.4 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|284165278|ref|YP_003403557.1| - 5.9e-12 45.1 0.9 4.8e-05 22.4 0.1 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|284165278|ref|YP_003403557.1| - 6.3e-08 31.8 2.3 3.9e-06 25.9 0.1 2.6 1 1 1 2 2 2 2 FAD binding domain FAD_binding_3 PF01494.14 gi|284165278|ref|YP_003403557.1| - 2.8e-07 29.9 5.0 0.0011 18.1 0.1 2.1 1 1 1 2 2 2 2 FAD binding domain Pyr_redox_3 PF13738.1 gi|284165278|ref|YP_003403557.1| - 3.2e-07 30.6 1.5 0.0076 16.3 0.1 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|284165278|ref|YP_003403557.1| - 3.7e-07 28.9 0.0 4.4e-05 22.1 0.0 2.2 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.12 gi|284165278|ref|YP_003403557.1| - 1.8e-06 27.2 0.1 1.3e-05 24.3 0.0 2.1 2 1 0 2 2 2 1 Thi4 family GIDA PF01134.17 gi|284165278|ref|YP_003403557.1| - 3.4e-06 26.1 0.1 0.00013 20.9 0.0 2.1 1 1 1 2 2 2 1 Glucose inhibited division protein A NAD_binding_9 PF13454.1 gi|284165278|ref|YP_003403557.1| - 1.1e-05 25.1 0.3 0.12 12.1 0.2 2.9 2 1 0 2 2 2 2 FAD-NAD(P)-binding NAD_binding_8 PF13450.1 gi|284165278|ref|YP_003403557.1| - 7.4e-05 22.7 0.0 0.00015 21.6 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain K_oxygenase PF13434.1 gi|284165278|ref|YP_003403557.1| - 0.00031 19.7 0.4 0.46 9.3 0.0 2.2 1 1 1 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) FAD_oxidored PF12831.2 gi|284165278|ref|YP_003403557.1| - 0.00031 19.9 0.2 0.00031 19.9 0.1 2.0 1 1 1 2 2 2 1 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|284165278|ref|YP_003403557.1| - 0.00069 19.9 0.2 0.034 14.5 0.1 2.5 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|284165278|ref|YP_003403557.1| - 0.0022 16.9 0.0 0.0049 15.8 0.0 1.6 2 0 0 2 2 2 1 Lycopene cyclase protein TrkA_N PF02254.13 gi|284165278|ref|YP_003403557.1| - 0.024 14.6 0.2 6.4 6.8 0.0 2.3 2 0 0 2 2 2 0 TrkA-N domain Cytomega_UL20A PF05984.7 gi|284165278|ref|YP_003403557.1| - 0.034 14.3 3.4 0.051 13.7 1.5 1.8 1 1 1 2 2 2 0 Cytomegalovirus UL20A protein 3HCDH_N PF02737.13 gi|284165278|ref|YP_003403557.1| - 0.086 12.4 0.0 0.1 12.2 0.0 1.4 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|284165278|ref|YP_003403557.1| - 0.15 12.3 0.7 0.52 10.5 0.4 2.0 1 1 0 1 1 1 0 Putative NAD(P)-binding MmgE_PrpD PF03972.9 gi|284165279|ref|YP_003403558.1| - 6.5e-103 344.2 0.9 7.2e-103 344.1 0.6 1.0 1 0 0 1 1 1 1 MmgE/PrpD family ComA PF02679.10 gi|284165280|ref|YP_003403559.1| - 8.1e-79 264.0 0.0 9.2e-79 263.9 0.0 1.0 1 0 0 1 1 1 1 (2R)-phospho-3-sulfolactate synthase (ComA) AP_endonuc_2 PF01261.19 gi|284165280|ref|YP_003403559.1| - 0.039 13.2 0.0 1.6 7.9 0.0 2.6 2 2 0 2 2 2 0 Xylose isomerase-like TIM barrel Xan_ur_permease PF00860.15 gi|284165281|ref|YP_003403560.1| - 2.4e-86 289.6 44.6 2.9e-86 289.3 30.9 1.1 1 0 0 1 1 1 1 Permease family Pribosyltran PF00156.22 gi|284165282|ref|YP_003403561.1| - 1.3e-20 73.3 0.6 1.7e-20 72.9 0.4 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|284165282|ref|YP_003403561.1| - 0.00028 20.1 0.1 0.00033 19.9 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|284165282|ref|YP_003403561.1| - 0.014 14.6 0.3 0.019 14.2 0.2 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase IF-2 PF11987.3 gi|284165282|ref|YP_003403561.1| - 0.073 12.9 0.1 0.11 12.3 0.1 1.3 1 0 0 1 1 1 0 Translation-initiation factor 2 Na_Ca_ex PF01699.19 gi|284165283|ref|YP_003403562.1| - 1.4e-17 63.5 19.7 1.8e-10 40.5 3.5 3.1 3 1 1 4 4 4 2 Sodium/calcium exchanger protein Git3_C PF11970.3 gi|284165283|ref|YP_003403562.1| - 0.2 11.4 6.5 13 5.6 0.0 4.4 4 1 1 5 5 5 0 G protein-coupled glucose receptor regulating Gpa2 C-term DIM PF08194.7 gi|284165283|ref|YP_003403562.1| - 0.81 9.6 3.7 12 5.8 0.5 3.4 2 0 0 2 2 2 0 DIM protein DAO PF01266.19 gi|284165284|ref|YP_003403563.1| - 1.2e-45 156.0 1.0 3e-45 154.6 0.4 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase Rieske PF00355.21 gi|284165284|ref|YP_003403563.1| - 8.9e-17 60.4 0.1 2.3e-16 59.1 0.1 1.6 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain FAD_binding_2 PF00890.19 gi|284165284|ref|YP_003403563.1| - 1.6e-07 30.5 1.3 2.8e-07 29.7 0.9 1.4 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.1 gi|284165284|ref|YP_003403563.1| - 3.4e-06 26.9 0.1 1.4e-05 25.0 0.1 2.2 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|284165284|ref|YP_003403563.1| - 8.4e-06 25.0 0.0 1.4e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|284165284|ref|YP_003403563.1| - 7.7e-05 22.6 0.5 0.00024 21.0 0.2 1.9 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|284165284|ref|YP_003403563.1| - 0.00021 20.4 0.1 0.00038 19.6 0.0 1.4 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.2 gi|284165284|ref|YP_003403563.1| - 0.00023 20.3 0.4 0.00038 19.6 0.3 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|284165284|ref|YP_003403563.1| - 0.00029 21.1 0.4 0.00092 19.5 0.2 1.9 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|284165284|ref|YP_003403563.1| - 0.00045 18.8 1.0 0.00067 18.2 0.3 1.5 2 0 0 2 2 2 1 HI0933-like protein Amino_oxidase PF01593.19 gi|284165284|ref|YP_003403563.1| - 0.0012 17.9 0.4 0.023 13.8 0.1 2.1 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase Trp_halogenase PF04820.9 gi|284165284|ref|YP_003403563.1| - 0.0033 16.1 0.7 0.0059 15.2 0.5 1.3 1 0 0 1 1 1 1 Tryptophan halogenase GIDA PF01134.17 gi|284165284|ref|YP_003403563.1| - 0.0063 15.4 0.2 0.01 14.7 0.1 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|284165284|ref|YP_003403563.1| - 0.0089 16.0 0.0 0.021 14.9 0.0 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|284165284|ref|YP_003403563.1| - 0.054 13.2 1.3 3.9 7.2 0.1 3.3 4 0 0 4 4 4 0 FAD-NAD(P)-binding Ribosomal_S9 PF00380.14 gi|284165284|ref|YP_003403563.1| - 0.1 12.8 0.0 0.17 12.0 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S9/S16 SNF PF00209.13 gi|284165285|ref|YP_003403564.1| - 9.1e-52 176.1 23.6 3.7e-26 91.6 4.2 2.1 1 1 1 2 2 2 2 Sodium:neurotransmitter symporter family DJ-1_PfpI PF01965.19 gi|284165287|ref|YP_003403566.1| - 3.8e-34 117.2 0.0 4.5e-34 117.0 0.0 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|284165287|ref|YP_003403566.1| - 5.8e-11 41.9 0.0 1e-10 41.1 0.0 1.4 1 1 0 1 1 1 1 Putative amidotransferase GATase PF00117.23 gi|284165287|ref|YP_003403566.1| - 0.00027 20.4 0.0 0.00034 20.1 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|284165287|ref|YP_003403566.1| - 0.0021 17.6 0.0 0.013 15.0 0.0 2.0 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.8 gi|284165287|ref|YP_003403566.1| - 0.15 11.5 0.0 0.23 10.8 0.0 1.3 1 0 0 1 1 1 0 Peptidase C26 CMD PF02627.15 gi|284165288|ref|YP_003403567.1| - 1.1e-13 50.8 0.3 1.1e-13 50.8 0.2 1.6 2 0 0 2 2 2 1 Carboxymuconolactone decarboxylase family Thioredoxin_2 PF13098.1 gi|284165288|ref|YP_003403567.1| - 0.034 14.3 0.0 0.046 13.9 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like domain Thioredoxin_4 PF13462.1 gi|284165288|ref|YP_003403567.1| - 0.074 13.0 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin L_biotic_typeA PF04604.8 gi|284165288|ref|YP_003403567.1| - 0.14 11.8 0.1 0.39 10.4 0.1 1.7 1 0 0 1 1 1 0 Type-A lantibiotic CTDII PF01556.13 gi|284165289|ref|YP_003403568.1| - 3.6e-33 113.3 0.0 1.9e-23 82.1 0.0 3.3 3 0 0 3 3 3 2 DnaJ C terminal domain DnaJ PF00226.26 gi|284165289|ref|YP_003403568.1| - 3.1e-24 84.4 3.9 3.1e-24 84.4 2.7 1.7 2 0 0 2 2 2 1 DnaJ domain DnaJ_CXXCXGXG PF00684.14 gi|284165289|ref|YP_003403568.1| - 1.7e-15 56.7 15.1 3.2e-15 55.9 10.5 1.5 1 0 0 1 1 1 1 DnaJ central domain Antiterm PF03589.8 gi|284165289|ref|YP_003403568.1| - 0.098 12.7 5.2 14 5.8 3.6 3.0 1 1 0 1 1 1 0 Antitermination protein DUF2318 PF10080.4 gi|284165289|ref|YP_003403568.1| - 0.1 12.3 5.0 0.97 9.2 0.3 2.4 1 1 1 2 2 2 0 Predicted membrane protein (DUF2318) RPT PF13446.1 gi|284165289|ref|YP_003403568.1| - 0.12 11.8 0.6 0.24 10.8 0.2 1.7 2 0 0 2 2 2 0 A repeated domain in UCH-protein DZR PF12773.2 gi|284165289|ref|YP_003403568.1| - 0.32 10.8 12.2 1 9.2 8.5 1.8 1 1 1 2 2 2 0 Double zinc ribbon zf-RING_3 PF14369.1 gi|284165289|ref|YP_003403568.1| - 2.4 8.2 11.6 7.6 6.6 0.1 3.1 3 0 0 3 3 3 0 zinc-finger Opy2 PF09463.5 gi|284165289|ref|YP_003403568.1| - 3.5 7.7 16.6 0.27 11.3 2.5 2.5 2 1 0 2 2 2 0 Opy2 protein A2L_zn_ribbon PF08792.5 gi|284165289|ref|YP_003403568.1| - 3.9 7.0 6.9 4 7.0 0.2 2.9 2 1 1 3 3 3 0 A2L zinc ribbon domain TAT_signal PF10518.4 gi|284165290|ref|YP_003403569.1| - 0.041 13.9 0.7 0.041 13.9 0.5 1.8 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence UPF0254 PF06787.6 gi|284165290|ref|YP_003403569.1| - 0.062 12.8 0.1 0.12 11.9 0.1 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0254) HSP70 PF00012.15 gi|284165291|ref|YP_003403570.1| - 2.3e-244 811.8 17.4 4.5e-242 804.2 12.0 2.0 1 1 0 1 1 1 1 Hsp70 protein MreB_Mbl PF06723.8 gi|284165291|ref|YP_003403570.1| - 1.7e-19 69.6 0.2 1.7e-19 69.6 0.1 2.0 2 0 0 2 2 2 1 MreB/Mbl protein StbA PF06406.6 gi|284165291|ref|YP_003403570.1| - 0.0086 15.0 0.0 0.051 12.5 0.0 2.1 2 0 0 2 2 2 1 StbA protein FGGY_C PF02782.11 gi|284165291|ref|YP_003403570.1| - 0.011 15.3 0.0 0.032 13.8 0.0 1.8 2 0 0 2 2 2 0 FGGY family of carbohydrate kinases, C-terminal domain Hydantoinase_A PF01968.13 gi|284165291|ref|YP_003403570.1| - 0.044 12.8 7.9 0.29 10.1 0.1 3.9 4 0 0 4 4 4 0 Hydantoinase/oxoprolinase FtsA PF14450.1 gi|284165291|ref|YP_003403570.1| - 0.11 12.3 3.8 3.4 7.5 0.5 3.9 2 1 0 2 2 2 0 Cell division protein FtsA GrpE PF01025.14 gi|284165292|ref|YP_003403571.1| - 2.4e-44 150.7 11.3 2.4e-44 150.7 7.8 2.2 1 1 1 2 2 2 1 GrpE AAA_13 PF13166.1 gi|284165292|ref|YP_003403571.1| - 0.00019 20.0 11.0 0.00022 19.8 7.6 1.1 1 0 0 1 1 1 1 AAA domain Spc7 PF08317.6 gi|284165292|ref|YP_003403571.1| - 0.00028 19.6 12.0 0.0004 19.1 8.3 1.3 1 0 0 1 1 1 1 Spc7 kinetochore protein IFT57 PF10498.4 gi|284165292|ref|YP_003403571.1| - 0.0003 19.6 10.6 0.0003 19.6 7.4 2.4 1 1 1 2 2 2 1 Intra-flagellar transport protein 57 Med9 PF07544.8 gi|284165292|ref|YP_003403571.1| - 0.00047 19.8 14.2 0.076 12.7 3.0 3.1 1 1 1 2 2 2 2 RNA polymerase II transcription mediator complex subunit 9 Atg14 PF10186.4 gi|284165292|ref|YP_003403571.1| - 0.00071 18.6 15.1 0.001 18.1 10.4 1.2 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 Reo_sigmaC PF04582.7 gi|284165292|ref|YP_003403571.1| - 0.0012 18.0 0.9 0.0017 17.5 0.6 1.2 1 0 0 1 1 1 1 Reovirus sigma C capsid protein EzrA PF06160.7 gi|284165292|ref|YP_003403571.1| - 0.0013 16.9 11.1 0.002 16.3 7.7 1.3 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA TBPIP PF07106.8 gi|284165292|ref|YP_003403571.1| - 0.0016 18.0 11.9 0.0028 17.2 8.2 1.5 1 0 0 1 1 1 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Cast PF10174.4 gi|284165292|ref|YP_003403571.1| - 0.0019 16.3 28.2 0.0027 15.8 19.6 1.1 1 0 0 1 1 1 1 RIM-binding protein of the cytomatrix active zone TMCO5 PF14992.1 gi|284165292|ref|YP_003403571.1| - 0.0037 16.4 18.4 0.0052 15.9 12.7 1.2 1 0 0 1 1 1 1 TMCO5 family DUF948 PF06103.6 gi|284165292|ref|YP_003403571.1| - 0.004 16.9 8.0 0.054 13.3 1.7 3.1 2 1 2 4 4 4 2 Bacterial protein of unknown function (DUF948) ATG16 PF08614.6 gi|284165292|ref|YP_003403571.1| - 0.0089 15.8 16.6 0.0089 15.8 11.5 2.4 1 1 1 2 2 2 1 Autophagy protein 16 (ATG16) IncA PF04156.9 gi|284165292|ref|YP_003403571.1| - 0.01 15.4 25.4 0.016 14.7 17.4 1.5 1 1 0 1 1 1 0 IncA protein SNARE PF05739.14 gi|284165292|ref|YP_003403571.1| - 0.027 14.1 8.9 0.025 14.2 4.2 2.5 2 0 0 2 2 1 0 SNARE domain NPV_P10 PF05531.7 gi|284165292|ref|YP_003403571.1| - 0.044 14.0 10.5 0.51 10.6 5.0 3.0 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF3584 PF12128.3 gi|284165292|ref|YP_003403571.1| - 0.049 10.9 18.7 0.077 10.3 12.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Baculo_PEP_C PF04513.7 gi|284165292|ref|YP_003403571.1| - 0.052 13.3 2.8 0.084 12.6 0.9 2.0 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF812 PF05667.6 gi|284165292|ref|YP_003403571.1| - 0.056 11.9 16.7 0.083 11.3 11.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF812) Herpes_UL6 PF01763.11 gi|284165292|ref|YP_003403571.1| - 0.059 11.5 5.8 0.082 11.0 4.0 1.3 1 0 0 1 1 1 0 Herpesvirus UL6 like Mod_r PF07200.8 gi|284165292|ref|YP_003403571.1| - 0.083 12.8 18.7 0.13 12.1 12.7 1.6 1 1 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein DUF745 PF05335.8 gi|284165292|ref|YP_003403571.1| - 0.12 11.8 14.8 0.3 10.5 10.2 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF745) Laminin_II PF06009.7 gi|284165292|ref|YP_003403571.1| - 0.17 11.6 11.6 0.33 10.7 2.1 2.6 1 1 1 2 2 2 0 Laminin Domain II Fib_alpha PF08702.5 gi|284165292|ref|YP_003403571.1| - 0.17 12.0 10.2 0.96 9.5 4.4 2.3 1 1 2 3 3 3 0 Fibrinogen alpha/beta chain family Bacillus_HBL PF05791.6 gi|284165292|ref|YP_003403571.1| - 0.21 10.9 9.9 1.5 8.1 3.5 2.4 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) TMPIT PF07851.8 gi|284165292|ref|YP_003403571.1| - 0.26 10.3 6.2 0.38 9.7 4.3 1.4 1 0 0 1 1 1 0 TMPIT-like protein Cluap1 PF10234.4 gi|284165292|ref|YP_003403571.1| - 0.33 10.1 13.6 0.54 9.4 9.5 1.3 1 0 0 1 1 1 0 Clusterin-associated protein-1 SlyX PF04102.7 gi|284165292|ref|YP_003403571.1| - 0.41 11.0 14.5 1.6 9.1 8.1 3.0 1 1 2 3 3 3 0 SlyX ADIP PF11559.3 gi|284165292|ref|YP_003403571.1| - 0.44 10.4 18.4 0.84 9.5 12.8 1.4 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding Macoilin PF09726.4 gi|284165292|ref|YP_003403571.1| - 0.54 8.4 19.1 0.77 7.9 13.3 1.2 1 0 0 1 1 1 0 Transmembrane protein DUF1664 PF07889.7 gi|284165292|ref|YP_003403571.1| - 0.55 10.0 10.6 1.6 8.5 5.9 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) DivIVA PF05103.8 gi|284165292|ref|YP_003403571.1| - 0.56 10.2 22.1 1.1 9.3 10.6 2.5 1 1 1 2 2 2 0 DivIVA protein Tweety PF04906.8 gi|284165292|ref|YP_003403571.1| - 0.57 8.5 1.3 0.82 8.0 0.9 1.3 1 0 0 1 1 1 0 Tweety Spectrin PF00435.16 gi|284165292|ref|YP_003403571.1| - 0.88 9.8 17.2 1.8 8.8 5.2 2.6 1 1 1 2 2 2 0 Spectrin repeat Mnd1 PF03962.10 gi|284165292|ref|YP_003403571.1| - 0.98 9.0 21.8 3.5 7.2 14.8 2.1 1 1 0 1 1 1 0 Mnd1 family GAS PF13851.1 gi|284165292|ref|YP_003403571.1| - 1 8.5 21.8 3 6.9 15.0 1.7 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding DUF3552 PF12072.3 gi|284165292|ref|YP_003403571.1| - 1.2 8.2 26.6 1.3 8.2 16.6 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) Cep57_MT_bd PF06657.8 gi|284165292|ref|YP_003403571.1| - 1.2 9.0 15.4 0.56 10.1 6.1 2.8 1 1 1 2 2 2 0 Centrosome microtubule-binding domain of Cep57 FUSC PF04632.7 gi|284165292|ref|YP_003403571.1| - 1.3 7.4 6.9 1.7 6.9 4.8 1.3 1 0 0 1 1 1 0 Fusaric acid resistance protein family APG6 PF04111.7 gi|284165292|ref|YP_003403571.1| - 1.4 7.9 23.8 4.9 6.0 16.5 1.8 1 1 0 1 1 1 0 Autophagy protein Apg6 DUF16 PF01519.11 gi|284165292|ref|YP_003403571.1| - 1.4 9.1 14.3 0.11 12.7 5.1 2.3 1 1 1 2 2 2 0 Protein of unknown function DUF16 DUF445 PF04286.7 gi|284165292|ref|YP_003403571.1| - 1.5 8.3 11.7 1.9 7.9 8.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF445) COG2 PF06148.6 gi|284165292|ref|YP_003403571.1| - 1.7 8.4 11.9 9.8 6.0 8.0 2.2 1 1 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 AATF-Che1 PF13339.1 gi|284165292|ref|YP_003403571.1| - 1.8 8.7 20.2 0.24 11.5 7.6 3.1 1 1 2 3 3 3 0 Apoptosis antagonizing transcription factor DUF2935 PF11155.3 gi|284165292|ref|YP_003403571.1| - 2.3 8.2 5.7 27 4.8 3.6 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF2935) Syntaxin PF00804.20 gi|284165292|ref|YP_003403571.1| - 2.7 8.2 16.6 0.49 10.5 6.6 2.6 1 1 1 2 2 2 0 Syntaxin DUF342 PF03961.8 gi|284165292|ref|YP_003403571.1| - 2.8 6.2 14.6 11 4.2 8.7 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF342) Sugarporin_N PF11471.3 gi|284165292|ref|YP_003403571.1| - 2.8 7.6 9.1 0.36 10.4 3.2 1.9 1 1 0 1 1 1 0 Maltoporin periplasmic N-terminal extension DUF241 PF03087.9 gi|284165292|ref|YP_003403571.1| - 3.5 7.0 14.4 0.35 10.3 5.4 2.1 1 1 1 2 2 2 0 Arabidopsis protein of unknown function V_ATPase_I PF01496.14 gi|284165292|ref|YP_003403571.1| - 3.8 5.2 17.9 2 6.1 2.3 2.1 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family OmpH PF03938.9 gi|284165292|ref|YP_003403571.1| - 3.8 7.4 21.6 4.9 7.0 14.0 1.8 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) DUF4279 PF14106.1 gi|284165292|ref|YP_003403571.1| - 4.5 7.1 13.2 7.9 6.3 0.7 3.8 1 1 3 4 4 4 0 Domain of unknown function (DUF4279) Sipho_Gp157 PF05565.6 gi|284165292|ref|YP_003403571.1| - 4.7 6.7 17.3 1.2 8.7 4.1 2.4 1 1 1 2 2 2 0 Siphovirus Gp157 FlgN PF05130.7 gi|284165292|ref|YP_003403571.1| - 4.9 7.3 20.8 3.9 7.7 11.4 2.2 1 1 0 2 2 2 0 FlgN protein DUF972 PF06156.8 gi|284165292|ref|YP_003403571.1| - 5 7.5 16.9 9.8 6.5 8.9 2.9 1 1 2 3 3 3 0 Protein of unknown function (DUF972) Occludin_ELL PF07303.8 gi|284165292|ref|YP_003403571.1| - 5.4 7.8 12.9 4.8 7.9 7.1 2.2 1 1 1 2 2 1 0 Occludin homology domain DOG1 PF14144.1 gi|284165292|ref|YP_003403571.1| - 6.3 6.9 5.6 10 6.2 0.0 3.1 2 1 1 3 3 3 0 Seed dormancy control Seryl_tRNA_N PF02403.17 gi|284165292|ref|YP_003403571.1| - 6.4 6.8 21.8 0.43 10.6 6.1 3.2 1 1 2 3 3 3 0 Seryl-tRNA synthetase N-terminal domain ING PF12998.2 gi|284165292|ref|YP_003403571.1| - 7.2 6.9 15.3 0.98 9.7 2.1 2.4 1 1 1 2 2 2 0 Inhibitor of growth proteins N-terminal histone-binding TMF_DNA_bd PF12329.3 gi|284165292|ref|YP_003403571.1| - 7.2 6.4 24.5 1.6 8.5 11.1 3.0 2 1 1 3 3 2 0 TATA element modulatory factor 1 DNA binding DUF4559 PF15112.1 gi|284165292|ref|YP_003403571.1| - 9.8 5.2 14.7 4.2 6.4 6.4 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4559) ResIII PF04851.10 gi|284165293|ref|YP_003403572.1| - 2.5e-25 89.3 0.0 4.7e-23 81.9 0.0 2.5 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|284165293|ref|YP_003403572.1| - 6.6e-14 51.5 0.1 1.5e-13 50.3 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|284165293|ref|YP_003403572.1| - 2.6e-08 33.5 0.0 1.1e-07 31.5 0.0 2.0 1 1 0 1 1 1 1 DEAD/DEAH box helicase SNF2_N PF00176.18 gi|284165293|ref|YP_003403572.1| - 4.1e-05 22.5 0.0 0.00025 19.9 0.0 2.2 1 1 1 2 2 2 1 SNF2 family N-terminal domain Helicase_C_2 PF13307.1 gi|284165293|ref|YP_003403572.1| - 0.11 12.4 0.0 11 5.9 0.0 2.6 3 0 0 3 3 3 0 Helicase C-terminal domain HTH_45 PF14947.1 gi|284165295|ref|YP_003403574.1| - 0.00013 21.6 0.0 0.00021 21.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.1 gi|284165295|ref|YP_003403574.1| - 0.0037 17.5 0.0 0.0073 16.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain Mrr_N PF14338.1 gi|284165295|ref|YP_003403574.1| - 0.016 15.2 0.1 0.05 13.6 0.0 1.8 2 1 0 2 2 2 0 Mrr N-terminal domain MarR_2 PF12802.2 gi|284165295|ref|YP_003403574.1| - 0.026 14.1 0.0 0.052 13.2 0.0 1.5 1 0 0 1 1 1 0 MarR family TrmB PF01978.14 gi|284165295|ref|YP_003403574.1| - 0.064 12.9 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB z-alpha PF02295.12 gi|284165295|ref|YP_003403574.1| - 0.075 12.8 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain DUF2250 PF10007.4 gi|284165295|ref|YP_003403574.1| - 0.15 11.9 0.3 4.7 7.1 0.0 2.1 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) DUF326 PF03860.11 gi|284165297|ref|YP_003403576.1| - 3.1e-06 26.6 50.1 0.0038 16.9 6.3 4.9 3 2 1 4 4 4 3 Domain of Unknown Function (DUF326) DEP PF00610.16 gi|284165297|ref|YP_003403576.1| - 0.063 13.0 0.4 0.1 12.3 0.3 1.4 1 0 0 1 1 1 0 Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) SPW PF03779.9 gi|284165298|ref|YP_003403577.1| - 0.00016 20.9 18.7 0.015 14.6 3.3 2.4 2 1 0 2 2 2 2 SPW repeat PepSY_TM PF03929.11 gi|284165298|ref|YP_003403577.1| - 2.9 8.4 10.0 0.26 11.7 0.9 3.0 3 0 0 3 3 3 0 PepSY-associated TM helix DUF3311 PF11755.3 gi|284165298|ref|YP_003403577.1| - 8.7 5.9 10.7 0.78 9.3 0.6 3.2 2 2 1 3 3 3 0 Protein of unknown function (DUF3311) RHH_1 PF01402.16 gi|284165299|ref|YP_003403578.1| - 1.4e-05 24.8 0.2 2.2e-05 24.1 0.2 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_2 PF03693.9 gi|284165299|ref|YP_003403578.1| - 0.003 17.7 0.8 0.0037 17.3 0.3 1.5 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0156) zf-ribbon_3 PF13248.1 gi|284165300|ref|YP_003403579.1| - 0.12 11.6 0.1 0.24 10.6 0.1 1.5 1 0 0 1 1 1 0 zinc-ribbon domain Trypsin_2 PF13365.1 gi|284165301|ref|YP_003403580.1| - 4.4e-19 68.6 0.6 2e-18 66.5 0.4 2.0 1 1 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.21 gi|284165301|ref|YP_003403580.1| - 7e-14 51.9 0.3 3.9e-10 39.6 0.0 2.2 2 0 0 2 2 2 2 Trypsin Peptidase_S46 PF10459.4 gi|284165301|ref|YP_003403580.1| - 5.7e-08 31.6 0.9 0.0014 17.1 0.2 2.2 2 0 0 2 2 2 2 Peptidase S46 TPR_11 PF13414.1 gi|284165301|ref|YP_003403580.1| - 0.0025 17.4 0.1 0.0046 16.5 0.0 1.4 1 0 0 1 1 1 1 TPR repeat DUF31 PF01732.11 gi|284165301|ref|YP_003403580.1| - 0.0093 15.3 3.3 0.13 11.5 0.5 3.0 2 1 1 3 3 3 1 Putative peptidase (DUF31) Peptidase_S32 PF05579.8 gi|284165301|ref|YP_003403580.1| - 0.15 11.0 2.3 3.3 6.6 0.1 2.2 2 0 0 2 2 2 0 Equine arteritis virus serine endopeptidase S32 DisA_N PF02457.11 gi|284165302|ref|YP_003403581.1| - 4.5e-07 29.0 0.1 1.6e-06 27.2 0.1 1.8 1 1 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding DUF790 PF05626.6 gi|284165303|ref|YP_003403582.1| - 8.3e-92 307.6 0.0 1e-90 304.0 0.0 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF790) Response_reg PF00072.19 gi|284165304|ref|YP_003403583.1| - 3.6e-19 68.8 0.0 4.9e-19 68.3 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain Methyltransf_26 PF13659.1 gi|284165304|ref|YP_003403583.1| - 0.13 12.3 0.1 0.22 11.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Glyoxalase PF00903.20 gi|284165305|ref|YP_003403584.1| - 1.7e-23 83.0 0.5 8.5e-15 54.8 0.0 2.2 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|284165305|ref|YP_003403584.1| - 1.3e-13 51.4 0.7 2.1e-09 37.9 0.1 2.2 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_3 PF13468.1 gi|284165305|ref|YP_003403584.1| - 0.2 11.5 3.2 14 5.5 0.0 3.0 2 1 0 2 2 2 0 Glyoxalase-like domain EamA PF00892.15 gi|284165306|ref|YP_003403585.1| - 7.1e-25 87.4 25.0 2e-16 60.1 6.8 2.4 2 1 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|284165306|ref|YP_003403585.1| - 0.0012 19.0 3.1 0.0012 19.0 2.1 3.2 1 1 2 3 3 3 2 Multidrug resistance efflux transporter Abhydrolase_6 PF12697.2 gi|284165307|ref|YP_003403586.1| - 6.4e-25 88.3 1.9 7.4e-25 88.1 1.3 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|284165307|ref|YP_003403586.1| - 8.9e-12 45.0 0.0 6.2e-05 22.6 0.0 2.2 1 1 0 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|284165307|ref|YP_003403586.1| - 2.4e-09 37.1 0.0 5.5e-09 35.9 0.0 1.6 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_4 PF08386.5 gi|284165307|ref|YP_003403586.1| - 7.5e-06 25.7 0.0 1.4e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 TAP-like protein DLH PF01738.13 gi|284165307|ref|YP_003403586.1| - 1e-05 24.9 0.0 0.013 14.7 0.0 2.2 2 0 0 2 2 2 2 Dienelactone hydrolase family Thioesterase PF00975.15 gi|284165307|ref|YP_003403586.1| - 0.0012 19.0 0.0 0.0015 18.7 0.0 1.3 1 0 0 1 1 1 1 Thioesterase domain Esterase PF00756.15 gi|284165307|ref|YP_003403586.1| - 0.13 11.6 0.0 0.19 11.1 0.0 1.3 1 0 0 1 1 1 0 Putative esterase Peptidase_S9 PF00326.16 gi|284165307|ref|YP_003403586.1| - 0.17 11.0 0.0 2.7 7.1 0.0 2.3 2 0 0 2 2 2 0 Prolyl oligopeptidase family EamA PF00892.15 gi|284165308|ref|YP_003403587.1| - 2.5e-31 108.3 31.4 8.4e-16 58.1 8.7 2.1 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|284165308|ref|YP_003403587.1| - 1.8e-06 28.1 8.6 1.8e-06 28.1 5.9 4.1 2 2 2 4 4 4 2 Multidrug resistance efflux transporter TPT PF03151.11 gi|284165308|ref|YP_003403587.1| - 0.12 12.0 16.5 0.11 12.1 5.6 2.7 2 1 0 2 2 2 0 Triose-phosphate Transporter family UPF0546 PF10639.4 gi|284165308|ref|YP_003403587.1| - 0.13 12.0 3.8 0.11 12.3 0.4 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0546 DUF543 PF04418.7 gi|284165308|ref|YP_003403587.1| - 5.1 7.1 7.7 9.6 6.2 1.6 3.1 2 1 0 2 2 2 0 Domain of unknown function (DUF543) Nol1_Nop2_Fmu_2 PF13636.1 gi|284165310|ref|YP_003403589.1| - 1.4e-16 60.3 0.0 2.4e-16 59.6 0.0 1.3 2 0 0 2 2 2 1 pre-rRNA processing and ribosome biogenesis Nol1_Nop2_Fmu PF01189.12 gi|284165311|ref|YP_003403590.1| - 3e-51 174.4 0.0 3.5e-51 174.2 0.0 1.0 1 0 0 1 1 1 1 NOL1/NOP2/sun family Methyltransf_31 PF13847.1 gi|284165311|ref|YP_003403590.1| - 6.2e-06 25.8 0.0 9.1e-06 25.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|284165311|ref|YP_003403590.1| - 5.2e-05 23.2 0.1 0.00012 22.0 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|284165311|ref|YP_003403590.1| - 0.0008 19.9 0.1 0.0023 18.5 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain FtsJ PF01728.14 gi|284165311|ref|YP_003403590.1| - 0.11 12.5 0.0 0.15 12.0 0.0 1.4 1 1 0 1 1 1 0 FtsJ-like methyltransferase PAC2 PF09754.4 gi|284165312|ref|YP_003403591.1| - 1.3e-38 133.0 0.0 1.6e-38 132.7 0.0 1.0 1 0 0 1 1 1 1 PAC2 family Hemerythrin PF01814.18 gi|284165313|ref|YP_003403592.1| - 2e-22 79.7 22.5 2.4e-22 79.5 14.2 1.8 1 1 1 2 2 2 1 Hemerythrin HHE cation binding domain ScdA_N PF04405.9 gi|284165313|ref|YP_003403592.1| - 5.2e-17 60.9 0.1 1.1e-16 59.9 0.1 1.6 1 0 0 1 1 1 1 Domain of Unknown function (DUF542) Vac_Fusion PF02346.11 gi|284165313|ref|YP_003403592.1| - 0.0023 17.3 0.5 3.9 6.9 0.0 3.4 3 1 1 4 4 4 2 Chordopoxvirus fusion protein CorA PF01544.13 gi|284165313|ref|YP_003403592.1| - 0.04 12.9 5.4 0.097 11.6 3.6 1.8 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein GlnD_UR_UTase PF08335.6 gi|284165313|ref|YP_003403592.1| - 0.11 12.3 5.4 0.087 12.6 0.8 2.3 1 1 1 2 2 2 0 GlnD PII-uridylyltransferase APG6 PF04111.7 gi|284165313|ref|YP_003403592.1| - 0.13 11.2 1.5 0.18 10.8 1.0 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 PilJ PF13675.1 gi|284165313|ref|YP_003403592.1| - 0.16 12.2 1.0 0.7 10.2 0.3 2.1 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term DUF3166 PF11365.3 gi|284165313|ref|YP_003403592.1| - 0.26 11.7 2.4 1 9.8 0.4 2.6 1 1 1 3 3 3 0 Protein of unknown function (DUF3166) Methyltransf_26 PF13659.1 gi|284165314|ref|YP_003403593.1| - 3.7e-08 33.4 0.4 9.7e-08 32.0 0.3 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|284165314|ref|YP_003403593.1| - 5.9e-08 32.5 0.0 8.5e-08 32.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|284165314|ref|YP_003403593.1| - 1.4e-06 28.7 0.1 4.3e-06 27.1 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain RrnaAD PF00398.15 gi|284165314|ref|YP_003403593.1| - 0.00015 20.8 0.0 0.00022 20.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase AAA_3 PF07726.6 gi|284165315|ref|YP_003403594.1| - 5.7e-66 220.0 0.1 1.1e-65 219.1 0.1 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|284165315|ref|YP_003403594.1| - 1e-13 51.2 0.0 2e-13 50.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|284165315|ref|YP_003403594.1| - 1.3e-05 25.4 0.0 3.6e-05 23.9 0.0 1.8 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|284165315|ref|YP_003403594.1| - 4.2e-05 23.0 0.0 0.00025 20.5 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain MCM PF00493.18 gi|284165315|ref|YP_003403594.1| - 0.00096 18.0 0.0 0.055 12.2 0.0 2.2 2 0 0 2 2 2 1 MCM2/3/5 family DUF3071 PF11268.3 gi|284165315|ref|YP_003403594.1| - 0.0024 17.6 0.5 0.0046 16.7 0.3 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3071) Mg_chelatase PF01078.16 gi|284165315|ref|YP_003403594.1| - 0.018 14.2 0.1 1.5 7.9 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI RuvB_N PF05496.7 gi|284165315|ref|YP_003403594.1| - 0.062 12.3 0.0 0.44 9.5 0.0 2.2 1 1 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus DUF58 PF01882.13 gi|284165317|ref|YP_003403596.1| - 1.1e-19 70.3 0.5 3.5e-19 68.7 0.4 1.9 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF11 PF01345.13 gi|284165317|ref|YP_003403596.1| - 1.1e-06 28.5 0.1 1.1e-06 28.5 0.1 2.7 2 0 0 2 2 2 1 Domain of unknown function DUF11 NPCBM_assoc PF10633.4 gi|284165317|ref|YP_003403596.1| - 0.0022 18.0 0.1 0.0022 18.0 0.1 2.7 3 1 0 3 3 3 1 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|284165317|ref|YP_003403596.1| - 0.014 15.4 0.0 0.03 14.3 0.0 1.6 1 0 0 1 1 1 0 CARDB DUF4129 PF13559.1 gi|284165319|ref|YP_003403598.1| - 6.6e-16 58.0 2.5 1.5e-15 56.9 1.7 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) Aldo_ket_red PF00248.16 gi|284165320|ref|YP_003403599.1| - 2.7e-64 216.7 0.0 3.2e-64 216.4 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family HTH_Tnp_1 PF01527.15 gi|284165320|ref|YP_003403599.1| - 0.073 13.0 0.1 3.3 7.7 0.0 2.5 2 0 0 2 2 2 0 Transposase Git3_C PF11970.3 gi|284165321|ref|YP_003403600.1| - 0.11 12.2 0.2 0.11 12.2 0.1 2.2 3 0 0 3 3 3 0 G protein-coupled glucose receptor regulating Gpa2 C-term DUF3735 PF12537.3 gi|284165321|ref|YP_003403600.1| - 2.5 8.2 5.4 3.1 7.8 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3735) SLAC1 PF03595.12 gi|284165322|ref|YP_003403601.1| - 0.046 12.3 5.1 0.055 12.0 3.6 1.0 1 0 0 1 1 1 0 Voltage-dependent anion channel BacA PF02673.13 gi|284165322|ref|YP_003403601.1| - 0.082 12.0 3.0 0.089 11.9 2.0 1.0 1 0 0 1 1 1 0 Bacitracin resistance protein BacA DUF308 PF03729.8 gi|284165322|ref|YP_003403601.1| - 0.085 12.8 6.0 0.11 12.4 4.0 1.4 1 1 0 1 1 1 0 Short repeat of unknown function (DUF308) Syndecan PF01034.15 gi|284165322|ref|YP_003403601.1| - 6.6 6.4 6.0 9.3 5.9 4.2 1.5 1 1 0 1 1 1 0 Syndecan domain PAPS_reduct PF01507.14 gi|284165323|ref|YP_003403602.1| - 9.4e-19 67.8 0.0 1.2e-14 54.5 0.0 3.0 2 1 0 2 2 2 2 Phosphoadenosine phosphosulfate reductase family ATP_bind_4 PF01902.12 gi|284165323|ref|YP_003403602.1| - 0.01 15.1 0.0 0.03 13.7 0.0 1.7 2 0 0 2 2 2 0 ATP-binding region DUF2150 PF09920.4 gi|284165324|ref|YP_003403603.1| - 4.2e-70 235.2 7.2 4.9e-70 235.0 5.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) TatD_DNase PF01026.16 gi|284165325|ref|YP_003403604.1| - 2e-21 76.3 0.0 8.4e-20 71.0 0.0 2.0 1 1 0 1 1 1 1 TatD related DNase EIAV_Rev PF11129.3 gi|284165326|ref|YP_003403605.1| - 0.0035 17.3 0.1 0.0039 17.1 0.1 1.0 1 0 0 1 1 1 1 Rev protein of equine infectious anaemia virus Matrilin_ccoil PF10393.4 gi|284165326|ref|YP_003403605.1| - 0.018 14.3 2.1 0.16 11.3 0.4 2.1 2 0 0 2 2 2 0 Trimeric coiled-coil oligomerisation domain of matrilin Tropomyosin PF00261.15 gi|284165326|ref|YP_003403605.1| - 0.024 13.7 0.3 0.028 13.5 0.2 1.0 1 0 0 1 1 1 0 Tropomyosin DUF4140 PF13600.1 gi|284165326|ref|YP_003403605.1| - 0.026 14.9 0.4 0.034 14.6 0.3 1.2 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) HypA PF01155.14 gi|284165326|ref|YP_003403605.1| - 0.059 13.0 0.1 0.059 13.0 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family FYVE_2 PF02318.11 gi|284165326|ref|YP_003403605.1| - 0.11 12.4 0.5 0.13 12.1 0.3 1.1 1 0 0 1 1 1 0 FYVE-type zinc finger Auto_anti-p27 PF06677.7 gi|284165326|ref|YP_003403605.1| - 0.23 11.2 2.3 0.35 10.6 1.6 1.2 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) MEDS PF14417.1 gi|284165327|ref|YP_003403606.1| - 7.9e-36 122.9 0.1 1.6e-35 121.9 0.1 1.4 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain HATPase_c PF02518.21 gi|284165327|ref|YP_003403606.1| - 2.8e-27 94.6 0.0 9.9e-27 92.8 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|284165327|ref|YP_003403606.1| - 7.4e-13 48.3 0.0 1.9e-12 47.0 0.0 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain KaiC PF06745.8 gi|284165327|ref|YP_003403606.1| - 3.5e-05 23.0 0.0 6.3e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 KaiC HATPase_c_5 PF14501.1 gi|284165327|ref|YP_003403606.1| - 0.011 15.4 0.0 0.021 14.4 0.0 1.5 1 0 0 1 1 1 0 GHKL domain NYN PF01936.13 gi|284165328|ref|YP_003403607.1| - 2.8e-18 66.5 0.0 3.3e-18 66.3 0.0 1.0 1 0 0 1 1 1 1 NYN domain CoA_binding_2 PF13380.1 gi|284165328|ref|YP_003403607.1| - 0.048 13.8 0.2 4.2 7.5 0.0 2.2 1 1 1 2 2 2 0 CoA binding domain Peptidase_S8 PF00082.17 gi|284165329|ref|YP_003403608.1| - 1.9e-54 184.7 5.9 1.9e-54 184.7 4.1 1.6 2 0 0 2 2 2 1 Subtilase family GST_N_3 PF13417.1 gi|284165330|ref|YP_003403609.1| - 7.7e-11 42.0 0.0 9.7e-11 41.7 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.19 gi|284165330|ref|YP_003403609.1| - 0.00011 22.0 0.0 0.0004 20.3 0.0 1.8 2 0 0 2 2 2 1 Glutaredoxin GST_N_2 PF13409.1 gi|284165330|ref|YP_003403609.1| - 0.00016 21.6 0.0 0.00021 21.2 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GCV_T PF01571.16 gi|284165331|ref|YP_003403610.1| - 1.6e-65 220.4 0.3 2.4e-65 219.8 0.2 1.3 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.6 gi|284165331|ref|YP_003403610.1| - 5.5e-25 87.2 0.1 9.8e-25 86.4 0.1 1.4 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain SoxG PF04268.7 gi|284165331|ref|YP_003403610.1| - 0.0027 17.5 0.3 0.61 9.9 0.0 2.2 2 0 0 2 2 2 2 Sarcosine oxidase, gamma subunit family TrmE_N PF10396.4 gi|284165331|ref|YP_003403610.1| - 0.018 15.0 0.0 0.34 10.8 0.0 2.3 2 0 0 2 2 2 0 GTP-binding protein TrmE N-terminus GCV_H PF01597.14 gi|284165332|ref|YP_003403611.1| - 1e-42 144.6 0.0 1.1e-42 144.5 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.17 gi|284165332|ref|YP_003403611.1| - 0.0087 15.6 0.4 0.015 14.9 0.0 1.5 2 0 0 2 2 2 1 Biotin-requiring enzyme HTH_31 PF13560.1 gi|284165333|ref|YP_003403612.1| - 7.6e-09 35.6 0.0 2.3e-08 34.1 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|284165333|ref|YP_003403612.1| - 1.4e-08 34.6 0.0 3e-08 33.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|284165333|ref|YP_003403612.1| - 3.2e-08 33.2 0.0 9.6e-08 31.7 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix IspD PF01128.14 gi|284165333|ref|YP_003403612.1| - 0.036 13.5 0.0 0.051 13.0 0.0 1.1 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF3054 PF11255.3 gi|284165334|ref|YP_003403613.1| - 6.1e-24 84.0 6.6 7.5e-24 83.7 4.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3054) DUF202 PF02656.10 gi|284165334|ref|YP_003403613.1| - 0.59 10.3 5.4 14 5.9 3.7 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF202) DUF1304 PF06993.7 gi|284165334|ref|YP_003403613.1| - 0.78 9.4 3.2 0.93 9.2 0.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1304) DnaJ PF00226.26 gi|284165335|ref|YP_003403614.1| - 8.2e-14 51.0 0.0 1.3e-13 50.4 0.0 1.4 1 0 0 1 1 1 1 DnaJ domain RPT PF13446.1 gi|284165335|ref|YP_003403614.1| - 0.0018 17.6 0.0 0.0035 16.7 0.0 1.5 1 0 0 1 1 1 1 A repeated domain in UCH-protein DZR PF12773.2 gi|284165335|ref|YP_003403614.1| - 0.59 10.0 27.2 7.5 6.4 2.3 4.4 1 1 1 2 2 2 0 Double zinc ribbon DUF164 PF02591.10 gi|284165335|ref|YP_003403614.1| - 1.1 9.0 17.5 0.17 11.7 1.7 3.5 3 0 0 3 3 3 0 Putative zinc ribbon domain Arc_trans_TRASH PF08394.5 gi|284165335|ref|YP_003403614.1| - 1.7 8.8 11.6 6.4 7.0 0.1 3.7 3 1 0 3 3 3 0 Archaeal TRASH domain HypA PF01155.14 gi|284165337|ref|YP_003403616.1| - 0.0004 20.0 0.2 0.00043 19.9 0.1 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family TF_Zn_Ribbon PF08271.7 gi|284165337|ref|YP_003403616.1| - 0.0005 19.3 0.8 0.063 12.6 0.1 2.1 2 0 0 2 2 2 1 TFIIB zinc-binding zinc_ribbon_4 PF13717.1 gi|284165337|ref|YP_003403616.1| - 0.0039 16.8 0.2 0.23 11.2 0.0 2.1 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|284165337|ref|YP_003403616.1| - 0.0056 16.2 0.5 0.28 10.7 0.1 2.1 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.2 gi|284165337|ref|YP_003403616.1| - 0.0069 16.1 1.7 0.012 15.4 1.2 1.4 1 1 0 1 1 1 1 Double zinc ribbon Zn_Tnp_IS1595 PF12760.2 gi|284165337|ref|YP_003403616.1| - 0.013 15.3 1.3 0.33 10.8 0.1 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain ADK_lid PF05191.9 gi|284165337|ref|YP_003403616.1| - 0.015 14.9 1.3 1.7 8.3 0.0 2.4 2 0 0 2 2 2 0 Adenylate kinase, active site lid PhnA_Zn_Ribbon PF08274.7 gi|284165337|ref|YP_003403616.1| - 0.038 13.7 2.3 4.6 7.1 0.1 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Ogr_Delta PF04606.7 gi|284165337|ref|YP_003403616.1| - 0.045 13.4 0.5 1.1 9.0 0.0 2.1 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-ribbon_3 PF13248.1 gi|284165337|ref|YP_003403616.1| - 0.062 12.5 2.9 2 7.7 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|284165337|ref|YP_003403616.1| - 0.085 12.3 2.6 4.4 6.8 0.1 2.1 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit GFA PF04828.9 gi|284165337|ref|YP_003403616.1| - 0.088 12.7 1.2 1.2 9.1 0.0 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme Lar_restr_allev PF14354.1 gi|284165337|ref|YP_003403616.1| - 0.088 13.1 2.3 0.32 11.3 1.6 1.8 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-C4_Topoisom PF01396.14 gi|284165337|ref|YP_003403616.1| - 0.095 12.2 1.4 2.8 7.5 0.1 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Prok-RING_1 PF14446.1 gi|284165337|ref|YP_003403616.1| - 0.096 12.4 3.0 2.2 8.0 0.3 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 TFIIS_C PF01096.13 gi|284165337|ref|YP_003403616.1| - 0.13 11.9 0.8 6.9 6.4 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Zn-ribbon_8 PF09723.5 gi|284165337|ref|YP_003403616.1| - 0.13 12.2 5.7 0.16 11.9 2.8 1.9 1 1 1 2 2 2 0 Zinc ribbon domain DUF35_N PF12172.3 gi|284165337|ref|YP_003403616.1| - 0.14 12.0 5.0 2.3 8.2 0.3 2.3 1 1 1 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Nudix_N_2 PF14803.1 gi|284165337|ref|YP_003403616.1| - 0.14 11.8 4.3 7 6.4 0.4 2.4 2 1 0 2 2 2 0 Nudix N-terminal A2L_zn_ribbon PF08792.5 gi|284165337|ref|YP_003403616.1| - 0.16 11.4 1.6 9.4 5.8 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|284165337|ref|YP_003403616.1| - 0.18 11.3 2.2 3.7 7.1 0.5 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn_ribbon_recom PF13408.1 gi|284165337|ref|YP_003403616.1| - 0.27 11.5 1.2 9.6 6.5 0.1 2.1 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain RRN7 PF11781.3 gi|284165337|ref|YP_003403616.1| - 0.35 10.4 3.6 7.8 6.0 0.2 2.2 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 OrfB_Zn_ribbon PF07282.6 gi|284165337|ref|YP_003403616.1| - 0.43 10.2 2.1 2.7 7.7 1.4 1.8 1 1 1 2 2 2 0 Putative transposase DNA-binding domain DUF723 PF05265.8 gi|284165337|ref|YP_003403616.1| - 0.75 9.6 3.8 1.3 8.8 2.6 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF723) UPF0547 PF10571.4 gi|284165337|ref|YP_003403616.1| - 0.76 9.5 6.4 6 6.6 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-tcix PF14952.1 gi|284165337|ref|YP_003403616.1| - 1.2 8.4 3.7 3 7.2 0.2 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-HYPF PF07503.7 gi|284165337|ref|YP_003403616.1| - 1.4 8.4 5.8 9.4 5.7 4.0 2.0 1 1 0 1 1 1 0 HypF finger zf-NADH-PPase PF09297.6 gi|284165337|ref|YP_003403616.1| - 1.8 8.1 5.2 8.4 5.9 0.2 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Auto_anti-p27 PF06677.7 gi|284165337|ref|YP_003403616.1| - 1.8 8.3 4.3 17 5.3 0.1 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF1610 PF07754.6 gi|284165337|ref|YP_003403616.1| - 1.8 8.7 5.9 25 5.1 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) DNA_ligase_ZBD PF03119.11 gi|284165337|ref|YP_003403616.1| - 2.4 7.9 5.3 0.65 9.7 0.5 2.3 2 1 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain CoA_binding PF02629.14 gi|284165338|ref|YP_003403617.1| - 2.3e-25 88.9 2.5 7.8e-25 87.2 0.5 2.3 2 0 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.14 gi|284165338|ref|YP_003403617.1| - 6.4e-14 51.8 0.5 1.4e-13 50.7 0.3 1.5 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.1 gi|284165338|ref|YP_003403617.1| - 2.8e-10 39.9 0.0 4.4e-10 39.3 0.0 1.3 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|284165338|ref|YP_003403617.1| - 1e-07 32.1 0.0 3.5e-06 27.1 0.0 2.2 2 0 0 2 2 2 1 CoA binding domain IlvN PF07991.7 gi|284165338|ref|YP_003403617.1| - 0.028 13.8 0.1 0.047 13.0 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain GFO_IDH_MocA PF01408.17 gi|284165338|ref|YP_003403617.1| - 0.11 13.0 0.2 0.47 10.9 0.1 2.0 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold ATP-grasp_2 PF08442.5 gi|284165339|ref|YP_003403618.1| - 8.8e-63 211.3 0.2 1.4e-62 210.7 0.1 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.1 gi|284165339|ref|YP_003403618.1| - 1.5e-22 79.9 3.1 2.1e-21 76.1 1.8 2.5 2 1 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.14 gi|284165339|ref|YP_003403618.1| - 1.6e-13 50.5 0.2 3.4e-13 49.4 0.1 1.5 1 0 0 1 1 1 1 CoA-ligase CPSase_L_D2 PF02786.12 gi|284165339|ref|YP_003403618.1| - 2.2e-13 50.0 0.8 1e-10 41.2 0.2 2.2 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_4 PF13535.1 gi|284165339|ref|YP_003403618.1| - 6.3e-11 42.3 0.8 3.8e-10 39.7 0.1 2.3 3 0 0 3 3 3 1 ATP-grasp domain ATP-grasp PF02222.17 gi|284165339|ref|YP_003403618.1| - 1.3e-07 31.1 0.0 2.5e-07 30.2 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|284165339|ref|YP_003403618.1| - 3.1e-07 30.1 0.2 6.9e-07 29.0 0.2 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RimK PF08443.6 gi|284165339|ref|YP_003403618.1| - 0.0032 16.9 0.0 0.0087 15.5 0.0 1.7 2 0 0 2 2 2 1 RimK-like ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|284165339|ref|YP_003403618.1| - 0.0035 16.7 0.2 0.013 14.9 0.0 2.1 2 1 0 2 2 2 1 D-ala D-ala ligase C-terminus DUF2411 PF10304.4 gi|284165339|ref|YP_003403618.1| - 0.099 12.2 0.5 1.9 8.1 0.0 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF2411) HrcA_DNA-bdg PF03444.10 gi|284165340|ref|YP_003403619.1| - 1.9e-19 68.8 0.0 2.6e-19 68.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.15 gi|284165340|ref|YP_003403619.1| - 3.5e-08 33.4 0.1 5.6e-08 32.7 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_20 PF12840.2 gi|284165340|ref|YP_003403619.1| - 0.00087 19.0 0.2 0.0019 17.9 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|284165340|ref|YP_003403619.1| - 0.0013 18.3 0.1 0.002 17.7 0.0 1.3 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|284165340|ref|YP_003403619.1| - 0.0049 16.5 0.9 0.015 14.9 0.1 2.1 2 0 0 2 2 2 1 MarR family TrmB PF01978.14 gi|284165340|ref|YP_003403619.1| - 0.011 15.3 0.1 0.018 14.7 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|284165340|ref|YP_003403619.1| - 0.035 13.9 0.3 0.11 12.2 0.1 1.9 2 1 0 2 2 2 0 Crp-like helix-turn-helix domain UbiA PF01040.13 gi|284165341|ref|YP_003403620.1| - 2.1e-28 99.2 19.6 2.9e-28 98.7 13.6 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family Trp_oprn_chp PF09534.5 gi|284165341|ref|YP_003403620.1| - 0.25 10.9 6.6 0.051 13.1 1.1 2.0 2 0 0 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) DUF3784 PF12650.2 gi|284165341|ref|YP_003403620.1| - 0.29 11.0 4.7 0.3 11.0 0.0 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF3784) DUF2418 PF10332.4 gi|284165341|ref|YP_003403620.1| - 0.61 10.4 3.6 0.33 11.3 0.4 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2418) DUF4242 PF14026.1 gi|284165342|ref|YP_003403621.1| - 2e-20 72.6 0.0 2.3e-20 72.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF4242) T2SM PF04612.7 gi|284165342|ref|YP_003403621.1| - 0.13 12.0 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein M FeoB_C PF07664.7 gi|284165343|ref|YP_003403622.1| - 0.34 10.3 3.3 0.75 9.2 0.1 2.3 2 0 0 2 2 2 0 Ferrous iron transport protein B C terminus OrfB_Zn_ribbon PF07282.6 gi|284165344|ref|YP_003403623.1| - 0.0077 15.8 0.2 0.01 15.4 0.1 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.5 gi|284165344|ref|YP_003403623.1| - 0.035 14.0 0.5 0.37 10.7 0.0 2.2 2 0 0 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|284165344|ref|YP_003403623.1| - 0.042 13.6 0.1 0.073 12.8 0.1 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-IS66 PF13005.2 gi|284165344|ref|YP_003403623.1| - 0.14 12.1 0.6 0.88 9.5 0.1 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 A2L_zn_ribbon PF08792.5 gi|284165344|ref|YP_003403623.1| - 0.15 11.5 2.2 1.2 8.6 0.0 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain DUF1272 PF06906.6 gi|284165344|ref|YP_003403623.1| - 0.71 9.7 3.1 0.7 9.7 0.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) Usp PF00582.21 gi|284165345|ref|YP_003403624.1| - 4.3e-30 104.7 0.4 4.9e-30 104.5 0.3 1.0 1 0 0 1 1 1 1 Universal stress protein family SAM_adeno_trans PF01887.11 gi|284165345|ref|YP_003403624.1| - 0.1 11.6 0.0 0.21 10.6 0.0 1.5 2 0 0 2 2 2 0 S-adenosyl-l-methionine hydroxide adenosyltransferase Lactamase_B PF00753.22 gi|284165346|ref|YP_003403625.1| - 3.3e-13 49.7 1.4 7.8e-13 48.5 1.0 1.7 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|284165346|ref|YP_003403625.1| - 2.1e-07 30.6 0.2 1.4e-05 24.7 0.1 2.2 2 0 0 2 2 2 2 Beta-lactamase superfamily domain RMMBL PF07521.7 gi|284165346|ref|YP_003403625.1| - 0.00011 21.8 2.7 0.00013 21.7 0.5 2.1 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase Dodecin PF07311.7 gi|284165347|ref|YP_003403626.1| - 3.7e-15 55.7 0.8 4.2e-15 55.5 0.5 1.0 1 0 0 1 1 1 1 Dodecin Form_Nir_trans PF01226.12 gi|284165348|ref|YP_003403627.1| - 5.3e-56 189.3 15.9 6.1e-56 189.1 11.0 1.0 1 0 0 1 1 1 1 Formate/nitrite transporter MFS_1 PF07690.11 gi|284165349|ref|YP_003403628.1| - 1.9e-18 66.3 49.7 5.2e-14 51.7 23.5 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF3754 PF12576.3 gi|284165349|ref|YP_003403628.1| - 1.9 8.1 3.5 6.4 6.4 2.4 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF3754) Macro PF01661.16 gi|284165350|ref|YP_003403629.1| - 4.4e-23 81.4 0.0 8.5e-22 77.2 0.0 2.1 1 1 0 1 1 1 1 Macro domain AP_endonuc_2 PF01261.19 gi|284165350|ref|YP_003403629.1| - 0.009 15.3 0.0 0.013 14.8 0.0 1.4 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Inositol_P PF00459.20 gi|284165351|ref|YP_003403630.1| - 2.8e-53 180.9 2.7 3.3e-53 180.7 1.9 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family DUF63 PF01889.12 gi|284165352|ref|YP_003403631.1| - 3e-28 99.6 11.9 5.1e-26 92.3 7.6 2.7 2 1 0 2 2 2 1 Membrane protein of unknown function DUF63 Glyco_hydro_43 PF04616.9 gi|284165353|ref|YP_003403632.1| - 4.7e-08 32.4 0.3 1.4e-07 30.9 0.2 1.7 1 1 0 1 1 1 1 Glycosyl hydrolases family 43 Cyto_ox_2 PF02322.10 gi|284165354|ref|YP_003403633.1| - 0.016 14.3 14.5 0.12 11.5 1.4 2.2 1 1 0 2 2 2 0 Cytochrome oxidase subunit II DUF3566 PF12089.3 gi|284165354|ref|YP_003403633.1| - 0.023 14.7 0.1 0.63 10.0 0.0 2.5 2 1 0 2 2 2 0 Transmembrane domain of unknown function (DUF3566) DUF998 PF06197.8 gi|284165354|ref|YP_003403633.1| - 0.041 13.1 31.3 0.13 11.5 21.7 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF998) DUF1290 PF06947.7 gi|284165354|ref|YP_003403633.1| - 0.053 13.4 1.1 0.11 12.4 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1290) PrgI PF12666.2 gi|284165354|ref|YP_003403633.1| - 0.4 10.8 9.7 3.1 8.0 0.3 2.8 3 0 0 3 3 3 0 PrgI family protein DUF3382 PF11862.3 gi|284165355|ref|YP_003403634.1| - 0.055 13.3 4.2 16 5.4 0.0 3.5 3 1 0 3 3 3 0 Domain of unknown function (DUF3382) DUF4386 PF14329.1 gi|284165355|ref|YP_003403634.1| - 0.98 8.8 26.0 2.6 7.4 18.2 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4386) DUF981 PF06168.6 gi|284165355|ref|YP_003403634.1| - 2.6 7.7 16.3 0.1 12.4 3.5 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF981) CD20 PF04103.10 gi|284165355|ref|YP_003403634.1| - 7.7 6.4 9.9 1.4 8.8 2.5 2.4 1 1 2 3 3 3 0 CD20-like family TrkA_N PF02254.13 gi|284165356|ref|YP_003403635.1| - 2.4e-27 95.2 0.6 4.1e-27 94.4 0.4 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|284165356|ref|YP_003403635.1| - 2.4e-14 52.6 1.2 6.9e-14 51.1 0.1 2.1 2 0 0 2 2 2 1 TrkA-C domain F420_oxidored PF03807.12 gi|284165356|ref|YP_003403635.1| - 1.9e-05 25.0 0.1 5.9e-05 23.4 0.0 1.9 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.1 gi|284165356|ref|YP_003403635.1| - 0.00016 21.9 0.1 0.0003 20.9 0.1 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding Pyr_redox PF00070.22 gi|284165356|ref|YP_003403635.1| - 0.00016 22.0 0.1 0.0045 17.3 0.0 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase XdhC_C PF13478.1 gi|284165356|ref|YP_003403635.1| - 0.00016 21.9 0.1 0.00023 21.4 0.0 1.3 1 0 0 1 1 1 1 XdhC Rossmann domain Saccharop_dh PF03435.13 gi|284165356|ref|YP_003403635.1| - 0.00047 19.2 0.2 0.00069 18.6 0.1 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase 3HCDH_N PF02737.13 gi|284165356|ref|YP_003403635.1| - 0.016 14.8 0.0 0.023 14.3 0.0 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|284165356|ref|YP_003403635.1| - 0.019 14.3 0.2 0.11 11.8 0.0 2.0 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NmrA PF05368.8 gi|284165356|ref|YP_003403635.1| - 0.022 14.0 0.0 0.32 10.1 0.0 2.0 1 1 1 2 2 2 0 NmrA-like family GFO_IDH_MocA PF01408.17 gi|284165356|ref|YP_003403635.1| - 0.034 14.6 0.2 0.067 13.7 0.1 1.6 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Peripla_BP_3 PF13377.1 gi|284165356|ref|YP_003403635.1| - 0.036 14.0 0.9 0.074 13.0 0.1 1.8 2 0 0 2 2 2 0 Periplasmic binding protein-like domain Shikimate_DH PF01488.15 gi|284165356|ref|YP_003403635.1| - 0.048 13.7 0.0 0.11 12.5 0.0 1.6 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase NAD_binding_2 PF03446.10 gi|284165356|ref|YP_003403635.1| - 0.056 13.2 0.0 0.12 12.2 0.0 1.7 1 1 1 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase TrkH PF02386.11 gi|284165357|ref|YP_003403636.1| - 7e-60 202.4 20.6 9.4e-59 198.7 10.3 2.1 2 0 0 2 2 2 2 Cation transport protein FUSC PF04632.7 gi|284165358|ref|YP_003403637.1| - 0.045 12.1 0.9 0.05 12.0 0.6 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family TrkH PF02386.11 gi|284165359|ref|YP_003403638.1| - 2.8e-51 174.1 16.4 4.6e-51 173.4 5.4 2.3 2 0 0 2 2 2 2 Cation transport protein tRNA_NucTran2_2 PF13735.1 gi|284165359|ref|YP_003403638.1| - 0.086 12.6 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 tRNA nucleotidyltransferase domain 2 putative Peptidase_M50 PF02163.17 gi|284165359|ref|YP_003403638.1| - 0.59 9.0 4.0 0.32 9.9 0.4 2.4 2 2 0 2 2 2 0 Peptidase family M50 DUF1049 PF06305.6 gi|284165359|ref|YP_003403638.1| - 3.6 7.1 7.5 0.21 11.0 0.1 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) NicO PF03824.11 gi|284165360|ref|YP_003403639.1| - 0.0088 15.3 0.9 0.0099 15.2 0.6 1.1 1 0 0 1 1 1 1 High-affinity nickel-transport protein Polysacc_synt_3 PF13440.1 gi|284165360|ref|YP_003403639.1| - 0.01 15.3 0.2 0.011 15.2 0.1 1.0 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein TraY PF05509.6 gi|284165360|ref|YP_003403639.1| - 0.056 13.2 0.0 0.082 12.6 0.0 1.2 1 0 0 1 1 1 0 TraY domain TMEM18 PF14770.1 gi|284165360|ref|YP_003403639.1| - 0.073 12.6 0.8 0.079 12.5 0.6 1.0 1 0 0 1 1 1 0 Transmembrane protein 18 PRRSV_2b PF07069.6 gi|284165360|ref|YP_003403639.1| - 0.11 12.7 1.6 0.14 12.5 1.1 1.2 1 0 0 1 1 1 0 Porcine reproductive and respiratory syndrome virus 2b AA_permease_2 PF13520.1 gi|284165361|ref|YP_003403640.1| - 3.3e-48 164.3 37.9 4.3e-48 163.9 26.3 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|284165361|ref|YP_003403640.1| - 9.2e-41 139.6 38.0 1.8e-40 138.7 26.3 1.4 1 1 0 1 1 1 1 Amino acid permease Usp PF00582.21 gi|284165361|ref|YP_003403640.1| - 2.3e-22 79.6 11.4 7.2e-11 42.4 0.9 3.0 2 1 0 2 2 2 2 Universal stress protein family Spore_permease PF03845.8 gi|284165361|ref|YP_003403640.1| - 5.2e-09 35.1 9.2 5.2e-09 35.1 6.4 2.3 2 1 0 2 2 2 1 Spore germination protein AA_permease_C PF13906.1 gi|284165361|ref|YP_003403640.1| - 0.012 15.4 7.4 0.015 15.1 2.7 2.9 2 0 0 2 2 2 0 C-terminus of AA_permease TrkA_N PF02254.13 gi|284165362|ref|YP_003403641.1| - 9.2e-51 170.7 5.5 6.2e-25 87.4 0.3 2.6 2 0 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.16 gi|284165362|ref|YP_003403641.1| - 9.6e-27 92.3 3.6 3.1e-15 55.5 0.0 3.6 4 0 0 4 4 3 2 TrkA-C domain NAD_binding_7 PF13241.1 gi|284165362|ref|YP_003403641.1| - 3e-13 49.9 0.9 3.3e-06 27.2 0.1 2.5 2 0 0 2 2 2 2 Putative NAD(P)-binding Shikimate_DH PF01488.15 gi|284165362|ref|YP_003403641.1| - 6.8e-12 45.6 1.0 3.5e-05 23.9 0.0 2.4 2 0 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase NAD_binding_10 PF13460.1 gi|284165362|ref|YP_003403641.1| - 3.9e-11 43.2 4.5 7.9e-05 22.7 0.1 2.5 2 0 0 2 2 2 2 NADH(P)-binding FAD_binding_3 PF01494.14 gi|284165362|ref|YP_003403641.1| - 3.6e-08 32.8 0.2 0.0046 16.0 0.0 2.5 3 0 0 3 3 3 2 FAD binding domain Saccharop_dh PF03435.13 gi|284165362|ref|YP_003403641.1| - 1.7e-07 30.5 2.0 8.5e-05 21.6 0.3 2.1 2 0 0 2 2 2 2 Saccharopine dehydrogenase F420_oxidored PF03807.12 gi|284165362|ref|YP_003403641.1| - 1.9e-07 31.4 0.1 0.021 15.2 0.0 3.3 3 0 0 3 3 2 2 NADP oxidoreductase coenzyme F420-dependent Pyr_redox PF00070.22 gi|284165362|ref|YP_003403641.1| - 2e-07 31.3 0.1 0.023 15.1 0.0 3.0 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|284165362|ref|YP_003403641.1| - 1.7e-05 24.8 0.1 0.027 14.3 0.0 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|284165362|ref|YP_003403641.1| - 6.2e-05 22.7 0.1 0.074 12.7 0.1 2.5 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|284165362|ref|YP_003403641.1| - 0.00014 21.3 0.1 0.0012 18.2 0.0 2.3 2 1 0 2 2 2 1 Ketopantoate reductase PanE/ApbA Pyr_redox_3 PF13738.1 gi|284165362|ref|YP_003403641.1| - 0.00058 19.9 0.7 2.4 8.1 0.1 3.3 2 2 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|284165362|ref|YP_003403641.1| - 0.00081 18.3 0.1 0.019 13.8 0.1 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_Gly3P_dh_N PF01210.18 gi|284165362|ref|YP_003403641.1| - 0.0012 18.6 0.0 0.17 11.5 0.0 2.8 3 0 0 3 3 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ADH_zinc_N PF00107.21 gi|284165362|ref|YP_003403641.1| - 0.0013 18.2 0.5 0.0093 15.5 0.0 2.6 2 1 1 3 3 3 1 Zinc-binding dehydrogenase 2-Hacid_dh_C PF02826.14 gi|284165362|ref|YP_003403641.1| - 0.0027 16.8 0.1 1.4 8.0 0.0 2.5 2 0 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|284165362|ref|YP_003403641.1| - 0.0054 16.5 0.0 1.1 9.0 0.0 2.5 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|284165362|ref|YP_003403641.1| - 0.0058 16.0 0.1 0.19 11.1 0.1 3.0 3 0 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ThiF PF00899.16 gi|284165362|ref|YP_003403641.1| - 0.0091 15.8 6.3 1.1 9.0 0.0 3.8 3 1 1 4 4 4 1 ThiF family GFO_IDH_MocA PF01408.17 gi|284165362|ref|YP_003403641.1| - 0.022 15.2 2.4 1.4 9.4 0.0 3.5 2 2 2 4 4 4 0 Oxidoreductase family, NAD-binding Rossmann fold CPSase_L_chain PF00289.17 gi|284165362|ref|YP_003403641.1| - 0.025 14.6 0.2 0.16 12.1 0.0 2.4 3 0 0 3 3 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain YjeF_N PF03853.10 gi|284165362|ref|YP_003403641.1| - 0.033 13.7 0.0 1.2 8.7 0.0 2.5 2 0 0 2 2 2 0 YjeF-related protein N-terminus HI0933_like PF03486.9 gi|284165362|ref|YP_003403641.1| - 0.048 12.1 0.0 2.1 6.7 0.0 2.2 2 0 0 2 2 2 0 HI0933-like protein DapB_N PF01113.15 gi|284165362|ref|YP_003403641.1| - 0.053 13.4 1.8 0.5 10.2 0.2 3.0 3 1 0 3 3 3 0 Dihydrodipicolinate reductase, N-terminus Nuc_deoxyrib_tr PF05014.10 gi|284165362|ref|YP_003403641.1| - 0.053 13.3 0.4 9.4 6.1 0.0 2.7 2 0 0 2 2 2 0 Nucleoside 2-deoxyribosyltransferase Thi4 PF01946.12 gi|284165362|ref|YP_003403641.1| - 0.061 12.4 0.1 5.4 6.0 0.0 2.6 2 0 0 2 2 2 0 Thi4 family NAD_binding_8 PF13450.1 gi|284165362|ref|YP_003403641.1| - 0.099 12.6 0.0 0.96 9.5 0.0 2.3 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Nop PF01798.13 gi|284165363|ref|YP_003403642.1| - 1.4e-41 141.3 0.1 2.2e-41 140.6 0.1 1.3 1 0 0 1 1 1 1 Putative snoRNA binding domain HutP PF09021.6 gi|284165363|ref|YP_003403642.1| - 0.025 14.7 0.3 0.13 12.4 0.1 1.9 2 0 0 2 2 2 0 HutP Adeno_PIX PF03955.9 gi|284165363|ref|YP_003403642.1| - 7.2 7.1 6.4 37 4.9 0.1 3.1 2 1 1 3 3 3 0 Adenovirus hexon-associated protein (IX) Fibrillarin PF01269.12 gi|284165364|ref|YP_003403643.1| - 1.3e-55 187.8 0.0 1.5e-55 187.6 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin PAS_7 PF12860.2 gi|284165365|ref|YP_003403644.1| - 0.016 15.1 0.0 0.028 14.4 0.0 1.4 1 0 0 1 1 1 0 PAS fold Trp_oprn_chp PF09534.5 gi|284165365|ref|YP_003403644.1| - 0.016 14.7 0.2 0.043 13.4 0.1 1.6 2 0 0 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) AMP-binding PF00501.23 gi|284165366|ref|YP_003403645.1| - 1.7e-108 362.7 0.1 2e-108 362.4 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|284165366|ref|YP_003403645.1| - 3.9e-19 69.3 0.2 2.2e-18 66.9 0.2 2.3 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain GCS2 PF04107.8 gi|284165367|ref|YP_003403646.1| - 7.3e-77 258.3 0.2 8.5e-77 258.0 0.1 1.0 1 0 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) Amidoligase_2 PF12224.3 gi|284165367|ref|YP_003403646.1| - 0.0023 17.6 0.5 0.065 12.8 0.2 2.5 1 1 0 1 1 1 1 Putative amidoligase enzyme GCS PF03074.11 gi|284165367|ref|YP_003403646.1| - 0.023 13.7 0.0 0.034 13.2 0.0 1.2 1 0 0 1 1 1 0 Glutamate-cysteine ligase TrmB PF01978.14 gi|284165368|ref|YP_003403647.1| - 1.7e-08 34.0 0.1 2.7e-08 33.3 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|284165368|ref|YP_003403647.1| - 0.0017 17.6 0.0 0.0028 16.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|284165368|ref|YP_003403647.1| - 0.0094 15.7 0.0 0.018 14.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TFIIE_alpha PF02002.12 gi|284165368|ref|YP_003403647.1| - 0.02 14.3 0.0 0.029 13.8 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit GntR PF00392.16 gi|284165368|ref|YP_003403647.1| - 0.044 13.2 0.1 0.088 12.2 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.5 gi|284165368|ref|YP_003403647.1| - 0.12 11.9 0.1 0.24 11.0 0.1 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain Peptidase_M24 PF00557.19 gi|284165369|ref|YP_003403648.1| - 3.9e-22 78.8 2.5 6e-22 78.2 1.7 1.3 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|284165369|ref|YP_003403648.1| - 0.00085 19.8 0.0 0.002 18.6 0.0 1.6 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain COX15-CtaA PF02628.10 gi|284165370|ref|YP_003403649.1| - 1.8e-17 63.1 23.8 4e-17 62.0 16.5 1.6 1 1 0 1 1 1 1 Cytochrome oxidase assembly protein CcmD PF04995.9 gi|284165370|ref|YP_003403649.1| - 0.069 12.9 0.3 0.069 12.9 0.2 3.9 4 0 0 4 4 4 0 Heme exporter protein D (CcmD) DUF4131 PF13567.1 gi|284165370|ref|YP_003403649.1| - 4.7 6.5 15.2 0.62 9.4 1.9 3.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) DUF4149 PF13664.1 gi|284165370|ref|YP_003403649.1| - 5 7.2 15.1 0.78 9.8 5.4 2.9 2 1 1 3 3 3 0 Domain of unknown function (DUF4149) DUF457 PF04307.9 gi|284165371|ref|YP_003403650.1| - 2.4e-14 52.9 9.1 2.9e-14 52.7 6.3 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) UT PF03253.9 gi|284165371|ref|YP_003403650.1| - 4.7 6.0 8.8 0.66 8.8 1.6 2.0 2 0 0 2 2 2 0 Urea transporter DUF4395 PF14340.1 gi|284165371|ref|YP_003403650.1| - 5.9 6.9 7.4 20 5.2 5.2 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4395) HTH_10 PF04967.7 gi|284165372|ref|YP_003403651.1| - 5.2e-16 57.9 0.0 8.3e-16 57.3 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|284165372|ref|YP_003403651.1| - 1.6e-07 30.4 0.2 7.8e-07 28.3 0.0 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|284165372|ref|YP_003403651.1| - 0.00027 20.5 0.2 0.00063 19.3 0.1 1.7 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.1 gi|284165372|ref|YP_003403651.1| - 0.0032 16.9 0.7 0.008 15.7 0.5 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|284165372|ref|YP_003403651.1| - 0.026 13.9 0.0 0.15 11.5 0.0 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_24 PF13412.1 gi|284165372|ref|YP_003403651.1| - 0.055 12.8 0.0 0.098 12.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF389 PF04087.9 gi|284165373|ref|YP_003403652.1| - 2.8e-34 118.0 19.2 2.8e-34 118.0 13.3 2.2 3 0 0 3 3 3 1 Domain of unknown function (DUF389) DUF3487 PF11990.3 gi|284165373|ref|YP_003403652.1| - 0.0041 16.5 3.2 0.0041 16.5 2.2 2.7 3 0 0 3 3 3 1 Protein of unknown function (DUF3487) DUF429 PF04250.8 gi|284165373|ref|YP_003403652.1| - 0.099 11.8 0.0 0.18 11.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF429) UDG PF03167.14 gi|284165374|ref|YP_003403653.1| - 1.5e-09 37.4 0.0 1.8e-09 37.2 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Peptidase_S8 PF00082.17 gi|284165375|ref|YP_003403654.1| - 4.3e-47 160.6 9.3 5.2e-47 160.3 6.5 1.1 1 0 0 1 1 1 1 Subtilase family TAT_signal PF10518.4 gi|284165375|ref|YP_003403654.1| - 0.0095 15.8 0.5 0.0095 15.8 0.3 5.0 6 1 0 6 6 6 1 TAT (twin-arginine translocation) pathway signal sequence DnaJ PF00226.26 gi|284165376|ref|YP_003403655.1| - 2e-21 75.4 1.8 3e-21 74.9 1.3 1.3 1 0 0 1 1 1 1 DnaJ domain RPT PF13446.1 gi|284165376|ref|YP_003403655.1| - 0.15 11.5 0.2 0.36 10.2 0.1 1.7 1 1 0 1 1 1 0 A repeated domain in UCH-protein IMS PF00817.15 gi|284165377|ref|YP_003403656.1| - 2.3e-37 128.0 0.0 4e-37 127.3 0.0 1.4 1 0 0 1 1 1 1 impB/mucB/samB family IMS_C PF11799.3 gi|284165377|ref|YP_003403656.1| - 7.1e-13 48.6 0.0 2.2e-12 46.9 0.0 1.8 2 0 0 2 2 2 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.3 gi|284165377|ref|YP_003403656.1| - 8.4e-06 25.5 0.0 1.7e-05 24.5 0.0 1.6 1 0 0 1 1 1 1 IMS family HHH motif HHH_5 PF14520.1 gi|284165377|ref|YP_003403656.1| - 6.8e-05 22.9 0.1 0.00021 21.3 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.4 gi|284165377|ref|YP_003403656.1| - 0.0011 18.5 0.0 0.0021 17.5 0.0 1.4 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda Cdd1 PF11731.3 gi|284165377|ref|YP_003403656.1| - 0.014 15.3 0.0 0.028 14.3 0.0 1.5 1 0 0 1 1 1 0 Pathogenicity locus ABC_trans_N PF14510.1 gi|284165377|ref|YP_003403656.1| - 0.15 12.1 1.1 6 7.0 0.0 3.3 4 0 0 4 4 4 0 ABC-transporter extracellular N-terminal HIPIP PF01355.12 gi|284165378|ref|YP_003403657.1| - 4.7e-06 26.6 1.4 8.6e-06 25.7 1.0 1.5 1 0 0 1 1 1 1 High potential iron-sulfur protein DUF2778 PF10908.3 gi|284165378|ref|YP_003403657.1| - 0.11 12.6 0.2 1.3 9.2 0.0 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF2778) TAT_signal PF10518.4 gi|284165378|ref|YP_003403657.1| - 1.4 9.0 5.9 0.34 11.0 1.9 1.6 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Fer4_11 PF13247.1 gi|284165379|ref|YP_003403658.1| - 1.1e-19 70.1 13.3 3.4e-15 55.7 2.4 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|284165379|ref|YP_003403658.1| - 6.3e-14 52.0 25.6 1.4e-08 34.9 4.7 3.7 2 2 2 4 4 4 4 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|284165379|ref|YP_003403658.1| - 2.8e-12 46.6 25.5 9.5e-11 41.7 4.0 3.0 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|284165379|ref|YP_003403658.1| - 1e-10 41.2 22.8 1.7e-07 30.9 3.8 3.0 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|284165379|ref|YP_003403658.1| - 2.1e-08 33.5 34.0 2.5e-05 23.9 1.4 4.7 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4 PF00037.22 gi|284165379|ref|YP_003403658.1| - 2.2e-07 30.2 34.8 8.3e-05 22.0 2.4 5.3 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_6 PF12837.2 gi|284165379|ref|YP_003403658.1| - 7e-06 25.6 35.4 0.00039 20.1 1.4 4.6 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_17 PF13534.1 gi|284165379|ref|YP_003403658.1| - 0.00045 20.5 18.8 0.011 16.1 0.8 4.0 3 1 2 5 5 5 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|284165379|ref|YP_003403658.1| - 0.00063 19.7 25.0 0.0019 18.1 4.7 3.6 2 2 1 3 3 3 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|284165379|ref|YP_003403658.1| - 0.0012 19.0 2.6 0.0012 19.0 1.8 4.5 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|284165379|ref|YP_003403658.1| - 0.0073 16.7 41.6 0.27 11.8 3.8 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_15 PF13459.1 gi|284165379|ref|YP_003403658.1| - 0.097 13.2 0.3 0.097 13.2 0.2 5.4 5 1 0 5 5 5 0 4Fe-4S single cluster domain UCR_Fe-S_N PF10399.4 gi|284165379|ref|YP_003403658.1| - 0.1 11.8 1.2 0.2 10.8 0.8 1.5 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TAT_signal PF10518.4 gi|284165379|ref|YP_003403658.1| - 0.6 10.2 5.6 1.1 9.4 3.9 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Fer4_21 PF14697.1 gi|284165379|ref|YP_003403658.1| - 0.64 9.9 29.0 0.96 9.3 7.9 3.7 2 2 1 3 3 3 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|284165379|ref|YP_003403658.1| - 1.3 9.8 30.3 2.2 9.0 0.0 4.3 2 1 2 4 4 4 0 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|284165379|ref|YP_003403658.1| - 4 7.9 26.3 0.25 11.8 2.3 4.5 2 1 2 4 4 4 0 4Fe-4S dicluster domain Copper-bind PF00127.15 gi|284165380|ref|YP_003403659.1| - 4.6e-06 26.7 0.0 7.6e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.4 gi|284165380|ref|YP_003403659.1| - 0.025 14.5 0.4 0.058 13.4 0.3 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence ABC2_membrane_3 PF12698.2 gi|284165381|ref|YP_003403660.1| - 0.18 10.7 9.7 3.9 6.4 7.6 1.9 2 0 0 2 2 2 0 ABC-2 family transporter protein Rick_17kDa_Anti PF05433.10 gi|284165381|ref|YP_003403660.1| - 2.3 7.9 0.0 2.3 7.9 0.0 3.8 4 0 0 4 4 4 0 Glycine zipper 2TM domain TFIIS_C PF01096.13 gi|284165382|ref|YP_003403661.1| - 1.1e-16 60.1 4.3 1.1e-16 60.1 3.0 2.6 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.11 gi|284165382|ref|YP_003403661.1| - 0.00015 21.3 2.1 0.00015 21.3 1.4 2.9 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.2 gi|284165382|ref|YP_003403661.1| - 0.0018 18.0 0.8 0.0018 18.0 0.6 2.3 2 1 0 2 2 2 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|284165382|ref|YP_003403661.1| - 0.0022 17.6 13.0 0.049 13.2 2.2 2.6 2 1 0 2 2 2 2 Putative transposase DNA-binding domain DZR PF12773.2 gi|284165382|ref|YP_003403661.1| - 0.0028 17.4 11.1 0.038 13.8 1.1 2.5 2 1 0 2 2 2 2 Double zinc ribbon Prok-RING_1 PF14446.1 gi|284165382|ref|YP_003403661.1| - 0.064 12.9 10.4 0.073 12.8 0.8 3.1 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 Tmemb_55A PF09788.4 gi|284165382|ref|YP_003403661.1| - 0.13 11.3 0.3 0.14 11.2 0.2 1.2 1 1 0 1 1 1 0 Transmembrane protein 55A zinc_ribbon_5 PF13719.1 gi|284165382|ref|YP_003403661.1| - 0.22 11.1 0.3 0.22 11.1 0.2 2.8 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|284165382|ref|YP_003403661.1| - 0.24 11.1 0.3 0.24 11.1 0.2 2.7 3 0 0 3 3 3 0 zinc-ribbon domain zf-tcix PF14952.1 gi|284165382|ref|YP_003403661.1| - 0.55 9.6 6.4 0.63 9.4 0.2 2.5 3 0 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding Ogr_Delta PF04606.7 gi|284165382|ref|YP_003403661.1| - 0.73 9.5 11.4 9.4 5.9 1.2 3.6 2 2 0 2 2 2 0 Ogr/Delta-like zinc finger ADK_lid PF05191.9 gi|284165382|ref|YP_003403661.1| - 1.7 8.3 9.8 18 5.0 0.1 4.0 4 0 0 4 4 4 0 Adenylate kinase, active site lid DUF2039 PF10217.4 gi|284165382|ref|YP_003403661.1| - 2.1 8.4 6.1 0.29 11.1 0.4 2.0 1 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2039) UPF0547 PF10571.4 gi|284165382|ref|YP_003403661.1| - 2.1 8.1 10.1 2 8.2 0.5 3.2 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 HypA PF01155.14 gi|284165382|ref|YP_003403661.1| - 4.4 7.0 11.0 1e+03 -0.6 7.6 2.4 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Nudix_N_2 PF14803.1 gi|284165382|ref|YP_003403661.1| - 4.5 7.0 12.8 12 5.6 1.5 4.3 3 1 1 4 4 4 0 Nudix N-terminal zf-RING_5 PF14634.1 gi|284165382|ref|YP_003403661.1| - 5.2 6.8 11.7 26 4.6 2.3 3.3 2 2 1 3 3 3 0 zinc-RING finger domain DUF2387 PF09526.5 gi|284165382|ref|YP_003403661.1| - 5.8 6.9 8.5 2 8.3 0.5 2.3 2 0 0 2 2 2 0 Probable metal-binding protein (DUF2387) GFA PF04828.9 gi|284165382|ref|YP_003403661.1| - 5.9 6.9 9.9 14 5.7 0.3 3.2 1 1 2 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme IBR PF01485.16 gi|284165382|ref|YP_003403661.1| - 7.9 6.4 12.4 5.5e+02 0.5 8.6 3.0 1 1 0 1 1 1 0 IBR domain DUF2461 PF09365.5 gi|284165384|ref|YP_003403663.1| - 0.063 12.6 0.1 0.22 10.9 0.1 1.7 1 1 1 2 2 2 0 Conserved hypothetical protein (DUF2461) DZR PF12773.2 gi|284165384|ref|YP_003403663.1| - 0.076 12.8 0.3 0.16 11.8 0.2 1.5 1 0 0 1 1 1 0 Double zinc ribbon PLAC9 PF15205.1 gi|284165384|ref|YP_003403663.1| - 0.16 12.2 1.4 0.37 11.0 0.1 2.3 2 0 0 2 2 2 0 Placenta-specific protein 9 HalX PF08663.5 gi|284165384|ref|YP_003403663.1| - 0.23 11.4 0.1 0.23 11.4 0.1 3.1 3 0 0 3 3 3 0 HalX domain DUF4631 PF15450.1 gi|284165384|ref|YP_003403663.1| - 0.31 9.2 3.3 0.52 8.5 0.1 2.0 1 1 0 2 2 2 0 Domain of unknown function (DUF4631) DUF35_N PF12172.3 gi|284165384|ref|YP_003403663.1| - 0.32 10.9 2.7 0.76 9.7 1.4 2.1 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) FUSC PF04632.7 gi|284165384|ref|YP_003403663.1| - 2.6 6.3 10.2 3.6 5.8 7.1 1.3 1 0 0 1 1 1 0 Fusaric acid resistance protein family KaiC PF06745.8 gi|284165385|ref|YP_003403664.1| - 2.2e-09 36.7 0.0 0.00025 20.2 0.0 2.1 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.1 gi|284165385|ref|YP_003403664.1| - 9e-06 25.2 1.8 0.016 14.6 0.1 2.2 2 0 0 2 2 2 2 AAA domain GHMP_kinases_N PF00288.21 gi|284165386|ref|YP_003403665.1| - 6.9e-06 26.0 0.5 1.5e-05 24.9 0.1 1.9 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|284165386|ref|YP_003403665.1| - 8.8e-05 22.6 0.2 0.00017 21.6 0.1 1.5 1 0 0 1 1 1 1 GHMP kinases C terminal Alpha-amylase PF00128.19 gi|284165387|ref|YP_003403666.1| - 5.5e-29 101.5 3.9 5e-28 98.4 2.7 2.4 1 1 0 1 1 1 1 Alpha amylase, catalytic domain DUF1939 PF09154.5 gi|284165387|ref|YP_003403666.1| - 1.4e-18 66.5 4.4 1.4e-18 66.5 3.1 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF1939) Glyco_tranf_2_3 PF13641.1 gi|284165388|ref|YP_003403667.1| - 4.4e-25 88.8 0.3 6e-25 88.3 0.2 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.21 gi|284165388|ref|YP_003403667.1| - 6.5e-22 78.0 0.0 8.3e-22 77.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.1 gi|284165388|ref|YP_003403667.1| - 1.5e-12 47.6 0.0 2.4e-12 46.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.4 gi|284165388|ref|YP_003403667.1| - 1.6e-12 47.0 0.0 1.8e-07 30.5 0.0 2.1 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|284165388|ref|YP_003403667.1| - 2.6e-05 23.5 0.0 4.4e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 NTP_transf_3 PF12804.2 gi|284165388|ref|YP_003403667.1| - 0.0028 17.7 0.1 0.0043 17.1 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Glyco_transf_7C PF02709.9 gi|284165388|ref|YP_003403667.1| - 0.047 13.1 0.0 0.079 12.4 0.0 1.3 1 0 0 1 1 1 0 N-terminal domain of galactosyltransferase NTP_transf_3 PF12804.2 gi|284165390|ref|YP_003403669.1| - 1e-33 116.6 1.6 1.3e-33 116.3 1.1 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.14 gi|284165390|ref|YP_003403669.1| - 0.017 14.7 0.0 0.033 13.8 0.0 1.4 1 0 0 1 1 1 0 Cytidylyltransferase NTP_transferase PF00483.18 gi|284165390|ref|YP_003403669.1| - 0.068 12.4 0.0 0.1 11.8 0.0 1.3 1 0 0 1 1 1 0 Nucleotidyl transferase ILVD_EDD PF00920.16 gi|284165391|ref|YP_003403670.1| - 1.4e-204 680.3 4.7 1.6e-204 680.1 3.2 1.0 1 0 0 1 1 1 1 Dehydratase family CTP_transf_2 PF01467.21 gi|284165393|ref|YP_003403672.1| - 3.1e-14 53.3 0.6 4.2e-14 52.8 0.4 1.3 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|284165393|ref|YP_003403672.1| - 0.12 11.9 0.0 0.23 11.0 0.0 1.6 2 0 0 2 2 2 0 FAD synthetase Prok-JAB PF14464.1 gi|284165394|ref|YP_003403673.1| - 4.8e-13 48.5 0.0 6e-13 48.2 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.16 gi|284165394|ref|YP_003403673.1| - 0.0029 17.3 0.0 0.0092 15.7 0.0 1.7 1 1 0 1 1 1 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease RadC PF04002.10 gi|284165394|ref|YP_003403673.1| - 0.023 14.3 0.0 0.037 13.7 0.0 1.3 1 0 0 1 1 1 0 RadC-like JAB domain Toxin-JAB1 PF15659.1 gi|284165394|ref|YP_003403673.1| - 0.12 12.3 0.1 0.17 11.7 0.0 1.2 1 0 0 1 1 1 0 JAB-like toxin 1 PTA_PTB PF01515.14 gi|284165395|ref|YP_003403674.1| - 1.5e-90 303.4 0.0 2.1e-90 303.0 0.0 1.2 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase Malic_M PF03949.10 gi|284165395|ref|YP_003403674.1| - 8.7e-69 231.9 0.2 1.4e-68 231.2 0.2 1.3 1 0 0 1 1 1 1 Malic enzyme, NAD binding domain malic PF00390.14 gi|284165395|ref|YP_003403674.1| - 5.3e-30 104.3 0.1 8.3e-28 97.1 0.0 2.5 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain DHH PF01368.15 gi|284165396|ref|YP_003403675.1| - 4.7e-10 39.2 0.0 8.4e-10 38.4 0.0 1.4 1 0 0 1 1 1 1 DHH family tRNA_anti-codon PF01336.20 gi|284165396|ref|YP_003403675.1| - 1.9e-09 37.2 0.0 3.9e-09 36.2 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1 PF00575.18 gi|284165396|ref|YP_003403675.1| - 0.002 18.1 0.2 0.0062 16.6 0.1 1.8 1 0 0 1 1 1 1 S1 RNA binding domain Rib_5-P_isom_A PF06026.9 gi|284165396|ref|YP_003403675.1| - 0.015 14.6 0.0 0.033 13.5 0.0 1.6 1 0 0 1 1 1 0 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Response_reg PF00072.19 gi|284165397|ref|YP_003403676.1| - 3.3e-13 49.6 0.0 3.8e-13 49.4 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain DUF2880 PF11082.3 gi|284165397|ref|YP_003403676.1| - 0.084 12.7 0.1 0.49 10.3 0.0 2.0 1 1 0 2 2 2 0 Protein of unknown function (DUF2880) DUF3695 PF12494.3 gi|284165398|ref|YP_003403677.1| - 0.11 12.2 0.1 0.17 11.5 0.1 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3695) HhH-GPD PF00730.20 gi|284165399|ref|YP_003403678.1| - 1.8e-15 57.1 0.0 3.5e-15 56.2 0.0 1.5 2 0 0 2 2 2 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|284165399|ref|YP_003403678.1| - 2.3e-08 33.2 0.0 5.1e-08 32.1 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif HemN_C PF06969.11 gi|284165399|ref|YP_003403678.1| - 0.055 13.5 0.4 0.16 12.0 0.2 1.8 1 0 0 1 1 1 0 HemN C-terminal domain FMN_red PF03358.10 gi|284165400|ref|YP_003403679.1| - 3.5e-37 127.2 0.0 4.2e-37 126.9 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|284165400|ref|YP_003403679.1| - 8.3e-12 45.0 0.0 1.3e-11 44.3 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin-like fold Usp PF00582.21 gi|284165400|ref|YP_003403679.1| - 0.062 13.4 0.7 0.12 12.5 0.1 1.6 2 0 0 2 2 2 0 Universal stress protein family Flavodoxin_5 PF12724.2 gi|284165400|ref|YP_003403679.1| - 0.11 12.4 0.0 0.2 11.6 0.0 1.5 1 1 0 1 1 1 0 Flavodoxin domain MeMO_Hyd_G PF02964.11 gi|284165400|ref|YP_003403679.1| - 0.13 12.1 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 Methane monooxygenase, hydrolase gamma chain UCR_6-4kD PF08997.5 gi|284165401|ref|YP_003403680.1| - 3.4 7.4 8.1 0.52 10.0 0.8 2.6 2 0 0 2 2 2 0 Ubiquinol-cytochrome C reductase complex, 6.4kD protein N6_N4_Mtase PF01555.13 gi|284165403|ref|YP_003403682.1| - 5.7e-35 120.8 0.0 7.1e-35 120.5 0.0 1.1 1 0 0 1 1 1 1 DNA methylase Methyltransf_26 PF13659.1 gi|284165403|ref|YP_003403682.1| - 5.2e-11 42.6 0.1 0.00018 21.5 0.0 2.5 2 0 0 2 2 2 2 Methyltransferase domain UPF0020 PF01170.13 gi|284165403|ref|YP_003403682.1| - 0.0018 17.8 0.0 0.16 11.5 0.0 2.2 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 Cupin_2 PF07883.6 gi|284165404|ref|YP_003403683.1| - 7.6e-10 38.1 1.2 1.1e-09 37.6 0.9 1.2 1 0 0 1 1 1 1 Cupin domain DUF1637 PF07847.7 gi|284165404|ref|YP_003403683.1| - 0.00083 18.7 0.0 0.00091 18.6 0.0 1.2 1 1 0 1 1 1 1 Protein of unknown function (DUF1637) CDO_I PF05995.7 gi|284165404|ref|YP_003403683.1| - 0.012 14.7 0.1 0.016 14.3 0.1 1.3 1 0 0 1 1 1 0 Cysteine dioxygenase type I Cupin_3 PF05899.7 gi|284165404|ref|YP_003403683.1| - 0.039 13.3 0.2 0.055 12.8 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF861) MannoseP_isomer PF01050.13 gi|284165404|ref|YP_003403683.1| - 0.13 11.8 0.0 0.15 11.6 0.0 1.1 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase S1-like PF14444.1 gi|284165404|ref|YP_003403683.1| - 0.22 11.2 2.1 1.8 8.3 0.3 2.5 2 1 0 2 2 2 0 S1-like PAS_4 PF08448.5 gi|284165405|ref|YP_003403684.1| - 9.1e-36 122.2 11.4 6.5e-16 58.3 0.1 4.0 3 1 0 3 3 3 3 PAS fold GAF_2 PF13185.1 gi|284165405|ref|YP_003403684.1| - 1.4e-23 84.0 1.1 1.9e-15 57.6 0.0 3.4 2 0 0 2 2 2 2 GAF domain PAS_9 PF13426.1 gi|284165405|ref|YP_003403684.1| - 2.3e-22 79.2 0.0 9.1e-08 32.4 0.0 4.5 5 0 0 5 5 4 3 PAS domain PAS PF00989.19 gi|284165405|ref|YP_003403684.1| - 1.7e-21 76.1 0.1 8.3e-08 32.0 0.0 3.8 3 0 0 3 3 3 3 PAS fold HTH_10 PF04967.7 gi|284165405|ref|YP_003403684.1| - 4.1e-20 71.1 0.0 3.5e-19 68.1 0.0 2.5 3 0 0 3 3 3 1 HTH DNA binding domain GAF_3 PF13492.1 gi|284165405|ref|YP_003403684.1| - 2.5e-18 66.4 0.7 5.3e-10 39.4 0.0 3.0 3 0 0 3 3 3 2 GAF domain GAF PF01590.21 gi|284165405|ref|YP_003403684.1| - 6.1e-14 52.4 1.3 7.5e-09 35.8 0.0 3.3 3 0 0 3 3 3 2 GAF domain PAS_8 PF13188.1 gi|284165405|ref|YP_003403684.1| - 5.7e-10 38.6 0.2 0.00025 20.8 0.0 3.8 3 0 0 3 3 3 2 PAS domain PAS_3 PF08447.6 gi|284165405|ref|YP_003403684.1| - 1.1e-09 38.2 0.1 1.9e-08 34.2 0.0 2.8 3 0 0 3 3 3 1 PAS fold PAS_10 PF13596.1 gi|284165405|ref|YP_003403684.1| - 3.5e-05 24.0 0.0 0.0029 17.8 0.0 2.7 2 0 0 2 2 2 1 PAS domain PAS_7 PF12860.2 gi|284165405|ref|YP_003403684.1| - 8e-05 22.6 0.1 0.0094 15.9 0.0 4.0 4 1 0 4 4 4 1 PAS fold Sigma70_r4 PF04545.11 gi|284165405|ref|YP_003403684.1| - 0.00071 18.8 0.1 0.0037 16.5 0.0 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 PAS_11 PF14598.1 gi|284165405|ref|YP_003403684.1| - 0.0075 16.2 0.0 0.074 13.0 0.0 2.6 3 0 0 3 3 3 1 PAS domain DUF2570 PF10828.3 gi|284165408|ref|YP_003403687.1| - 0.6 9.7 15.1 0.036 13.6 1.5 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2570) DUF3391 PF11871.3 gi|284165408|ref|YP_003403687.1| - 6.3 7.0 10.7 10 6.3 0.4 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF3391) SNARE_assoc PF09335.6 gi|284165410|ref|YP_003403689.1| - 2e-13 50.5 4.0 2e-13 50.5 2.7 2.3 3 0 0 3 3 3 1 SNARE associated Golgi protein Response_reg PF00072.19 gi|284165411|ref|YP_003403690.1| - 4.2e-16 58.9 0.2 6.7e-16 58.2 0.2 1.3 1 0 0 1 1 1 1 Response regulator receiver domain HalX PF08663.5 gi|284165411|ref|YP_003403690.1| - 3.8e-07 29.9 0.8 9.2e-07 28.7 0.5 1.7 1 0 0 1 1 1 1 HalX domain DUF2043 PF09740.4 gi|284165412|ref|YP_003403691.1| - 0.028 14.5 0.4 0.028 14.5 0.3 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2043) zf-RING_3 PF14369.1 gi|284165412|ref|YP_003403691.1| - 0.095 12.7 0.2 0.095 12.7 0.1 2.0 2 0 0 2 2 2 0 zinc-finger Zn-ribbon_8 PF09723.5 gi|284165412|ref|YP_003403691.1| - 0.097 12.6 2.5 0.47 10.4 0.5 2.2 1 1 1 2 2 2 0 Zinc ribbon domain DUF1272 PF06906.6 gi|284165412|ref|YP_003403691.1| - 0.13 12.1 0.4 0.13 12.1 0.3 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) zf-Mss51 PF13824.1 gi|284165412|ref|YP_003403691.1| - 0.18 11.6 4.0 0.24 11.2 2.8 1.2 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Rieske PF00355.21 gi|284165412|ref|YP_003403691.1| - 0.59 9.7 4.8 0.64 9.6 3.3 1.3 1 1 0 1 1 1 0 Rieske [2Fe-2S] domain Auto_anti-p27 PF06677.7 gi|284165412|ref|YP_003403691.1| - 1 9.1 4.2 1.3 8.8 2.9 1.2 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn_Tnp_IS1595 PF12760.2 gi|284165412|ref|YP_003403691.1| - 1.9 8.3 6.0 4 7.3 4.2 1.7 1 1 0 1 1 1 0 Transposase zinc-ribbon domain MFS_1 PF07690.11 gi|284165413|ref|YP_003403692.1| - 2.5e-19 69.2 62.1 1.2e-14 53.7 27.8 2.5 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|284165413|ref|YP_003403692.1| - 0.027 13.0 34.0 0.11 11.0 7.2 2.2 2 0 0 2 2 2 0 Sugar (and other) transporter MFS_1_like PF12832.2 gi|284165413|ref|YP_003403692.1| - 0.12 12.2 0.0 0.12 12.2 0.0 3.1 3 1 0 3 3 3 0 MFS_1 like family Ribonuc_red_lgC PF02867.10 gi|284165414|ref|YP_003403693.1| - 1.2e-152 509.2 0.0 1.5e-152 508.9 0.0 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain TSCPD PF12637.2 gi|284165414|ref|YP_003403693.1| - 3.8e-28 97.2 0.0 1.5e-27 95.3 0.0 2.2 1 0 0 1 1 1 1 TSCPD domain Ribonuc_red_lgN PF00317.16 gi|284165414|ref|YP_003403693.1| - 8.1e-25 86.4 0.1 3e-24 84.6 0.0 2.1 2 0 0 2 2 2 1 Ribonucleotide reductase, all-alpha domain DUF2461 PF09365.5 gi|284165414|ref|YP_003403693.1| - 0.0058 16.0 0.1 0.13 11.6 0.1 2.6 2 0 0 2 2 2 1 Conserved hypothetical protein (DUF2461) Y_phosphatase3C PF13348.1 gi|284165414|ref|YP_003403693.1| - 0.028 14.5 0.2 0.63 10.1 0.0 3.2 2 0 0 2 2 2 0 Tyrosine phosphatase family C-terminal region zf-ribbon_3 PF13248.1 gi|284165414|ref|YP_003403693.1| - 2.7 7.3 6.8 6.1 6.1 4.7 1.6 1 0 0 1 1 1 0 zinc-ribbon domain GATase PF00117.23 gi|284165416|ref|YP_003403695.1| - 4.5e-48 163.2 0.0 5.1e-48 163.0 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|284165416|ref|YP_003403695.1| - 2.2e-06 27.2 0.1 7.7e-06 25.4 0.0 1.8 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.19 gi|284165416|ref|YP_003403695.1| - 0.059 12.8 0.0 0.17 11.3 0.0 1.7 2 0 0 2 2 2 0 DJ-1/PfpI family Chorismate_bind PF00425.13 gi|284165417|ref|YP_003403696.1| - 3.9e-88 295.0 0.0 1.1e-87 293.6 0.0 1.7 2 0 0 2 2 2 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|284165417|ref|YP_003403696.1| - 2.8e-23 82.4 0.9 4.4e-22 78.5 0.5 3.0 3 1 0 3 3 3 1 Anthranilate synthase component I, N terminal region DUF3090 PF11290.3 gi|284165417|ref|YP_003403696.1| - 0.032 13.6 0.1 0.095 12.1 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3090) Tegument_dsDNA PF12818.2 gi|284165417|ref|YP_003403696.1| - 0.16 10.8 0.0 0.25 10.1 0.0 1.2 1 0 0 1 1 1 0 dsDNA viral tegument protein PRAI PF00697.17 gi|284165418|ref|YP_003403697.1| - 9.6e-37 126.4 0.0 1.1e-36 126.2 0.0 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Glycos_transf_3 PF00591.16 gi|284165419|ref|YP_003403698.1| - 8.1e-98 326.8 2.7 1.2e-97 326.3 1.9 1.2 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|284165419|ref|YP_003403698.1| - 2.4e-17 62.2 3.4 2.4e-17 62.2 2.4 2.2 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain DUF2717 PF10911.3 gi|284165419|ref|YP_003403698.1| - 0.014 14.8 0.0 0.035 13.6 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2717) MarR_2 PF12802.2 gi|284165420|ref|YP_003403699.1| - 0.00083 18.9 0.2 0.0022 17.6 0.1 1.7 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|284165420|ref|YP_003403699.1| - 0.00099 19.3 0.1 0.0018 18.5 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|284165420|ref|YP_003403699.1| - 0.0045 16.5 0.1 0.01 15.4 0.1 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain Trp_repressor PF01371.14 gi|284165420|ref|YP_003403699.1| - 0.02 14.8 0.0 0.036 13.9 0.0 1.4 1 0 0 1 1 1 0 Trp repressor protein HTH_24 PF13412.1 gi|284165420|ref|YP_003403699.1| - 0.028 13.7 0.0 0.049 13.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|284165420|ref|YP_003403699.1| - 0.036 13.7 0.0 0.082 12.5 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF1724 PF08350.5 gi|284165420|ref|YP_003403699.1| - 0.11 12.0 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1724) MarR PF01047.17 gi|284165420|ref|YP_003403699.1| - 0.13 12.0 0.1 0.48 10.1 0.0 2.0 1 1 1 2 2 2 0 MarR family MmoB_DmpM PF02406.12 gi|284165421|ref|YP_003403700.1| - 0.011 15.7 0.0 0.014 15.3 0.0 1.3 1 0 0 1 1 1 0 MmoB/DmpM family PLC-beta_C PF08703.5 gi|284165421|ref|YP_003403700.1| - 0.018 14.7 0.4 0.03 14.0 0.2 1.3 1 1 0 1 1 1 0 PLC-beta C terminal DUF1059 PF06348.6 gi|284165421|ref|YP_003403700.1| - 0.062 13.1 1.5 0.081 12.7 1.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1059) Tetraspannin PF00335.15 gi|284165422|ref|YP_003403701.1| - 0.076 12.2 4.5 0.022 14.0 0.6 1.7 1 1 0 1 1 1 0 Tetraspanin family HTH_10 PF04967.7 gi|284165425|ref|YP_003403704.1| - 1.3e-15 56.7 0.1 1.9e-15 56.1 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|284165425|ref|YP_003403704.1| - 7.6e-06 25.1 0.1 1.8e-05 23.9 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|284165425|ref|YP_003403704.1| - 0.00022 20.5 0.0 0.00037 19.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|284165425|ref|YP_003403704.1| - 0.00031 20.3 0.1 0.0006 19.4 0.1 1.5 1 0 0 1 1 1 1 MarR family Sigma70_r4_2 PF08281.7 gi|284165425|ref|YP_003403704.1| - 0.0018 17.6 0.1 0.01 15.2 0.1 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_AsnC-type PF13404.1 gi|284165425|ref|YP_003403704.1| - 0.04 13.4 0.3 0.04 13.4 0.2 1.7 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|284165425|ref|YP_003403704.1| - 0.13 11.9 0.0 0.33 10.6 0.0 1.7 1 0 0 1 1 1 0 HTH domain Mem_trans PF03547.13 gi|284165427|ref|YP_003403706.1| - 5e-25 87.5 20.2 3e-15 55.4 6.7 2.0 1 1 1 2 2 2 2 Membrane transport protein Mitofilin PF09731.4 gi|284165428|ref|YP_003403707.1| - 0.49 8.9 11.2 0.59 8.7 7.8 1.1 1 0 0 1 1 1 0 Mitochondrial inner membrane protein Virul_fac_BrkB PF03631.10 gi|284165429|ref|YP_003403708.1| - 1.2e-48 165.7 25.4 1.5e-48 165.4 17.6 1.0 1 0 0 1 1 1 1 Virulence factor BrkB CAP PF00188.21 gi|284165430|ref|YP_003403709.1| - 8.2e-12 45.6 0.2 1.5e-11 44.8 0.1 1.4 1 0 0 1 1 1 1 Cysteine-rich secretory protein family CBS PF00571.23 gi|284165432|ref|YP_003403711.1| - 4.3e-42 141.6 9.2 2.7e-13 49.4 0.1 4.5 4 0 0 4 4 4 4 CBS domain Ribosomal_S30AE PF02482.14 gi|284165432|ref|YP_003403711.1| - 0.00035 20.9 0.2 0.0012 19.2 0.1 1.9 2 0 0 2 2 2 1 Sigma 54 modulation protein / S30EA ribosomal protein DUF3010 PF11215.3 gi|284165432|ref|YP_003403711.1| - 0.074 12.9 0.5 0.4 10.5 0.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3010) Cache_1 PF02743.13 gi|284165432|ref|YP_003403711.1| - 0.12 11.9 0.6 3.4 7.2 0.0 3.1 2 1 0 2 2 2 0 Cache domain DUF1508 PF07411.7 gi|284165432|ref|YP_003403711.1| - 0.13 11.6 0.2 0.39 10.2 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1508) YjcQ PF09639.5 gi|284165432|ref|YP_003403711.1| - 0.22 11.6 0.9 27 4.9 0.0 3.4 2 1 0 3 3 3 0 YjcQ protein Glyco_hydro_3 PF00933.16 gi|284165433|ref|YP_003403712.1| - 1.3e-81 273.8 0.0 2.3e-81 273.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.17 gi|284165433|ref|YP_003403712.1| - 3.8e-60 203.2 0.4 1.8e-59 201.0 0.2 2.0 1 1 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.1 gi|284165433|ref|YP_003403712.1| - 6.7e-16 57.9 0.0 1.6e-15 56.8 0.0 1.7 1 0 0 1 1 1 1 Fibronectin type III-like domain Rad51 PF08423.6 gi|284165434|ref|YP_003403713.1| - 1.8e-28 99.1 0.0 2.3e-28 98.7 0.0 1.0 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.1 gi|284165434|ref|YP_003403713.1| - 7.3e-17 61.4 0.3 1.1e-16 60.8 0.2 1.1 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|284165434|ref|YP_003403713.1| - 6.1e-12 45.2 0.1 7.9e-12 44.8 0.1 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein KaiC PF06745.8 gi|284165434|ref|YP_003403713.1| - 2.9e-11 42.9 0.0 5.1e-11 42.1 0.0 1.4 1 1 0 1 1 1 1 KaiC Zot PF05707.7 gi|284165434|ref|YP_003403713.1| - 1.7e-10 40.7 0.0 2.2e-10 40.3 0.0 1.1 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) AAA_19 PF13245.1 gi|284165434|ref|YP_003403713.1| - 0.0006 19.5 0.3 0.0015 18.2 0.2 1.7 1 1 0 1 1 1 1 Part of AAA domain AAA_10 PF12846.2 gi|284165434|ref|YP_003403713.1| - 0.0033 16.8 0.1 0.36 10.2 0.0 2.2 1 1 0 2 2 2 1 AAA-like domain AAA_24 PF13479.1 gi|284165434|ref|YP_003403713.1| - 0.0062 16.1 1.3 0.01 15.4 0.9 1.6 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|284165434|ref|YP_003403713.1| - 0.012 14.9 0.1 0.057 12.8 0.0 1.9 1 1 1 2 2 2 0 IstB-like ATP binding protein Arch_ATPase PF01637.13 gi|284165434|ref|YP_003403713.1| - 0.04 13.6 0.0 0.05 13.3 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase DUF2075 PF09848.4 gi|284165434|ref|YP_003403713.1| - 0.11 11.4 0.0 0.12 11.2 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) DnaB_C PF03796.10 gi|284165434|ref|YP_003403713.1| - 0.12 11.2 0.0 0.36 9.6 0.0 1.7 1 1 1 2 2 2 0 DnaB-like helicase C terminal domain AAA PF00004.24 gi|284165434|ref|YP_003403713.1| - 0.13 12.4 0.1 0.22 11.7 0.0 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Big_3_3 PF13750.1 gi|284165435|ref|YP_003403714.1| - 0.004 16.5 0.1 0.0086 15.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 3) DUF460 PF04312.8 gi|284165435|ref|YP_003403714.1| - 0.03 13.8 0.2 0.073 12.5 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF460) Prosystemin PF07376.6 gi|284165436|ref|YP_003403715.1| - 5.3 6.3 10.9 0.88 8.9 3.6 2.5 2 1 0 2 2 2 0 Prosystemin DUF4179 PF13786.1 gi|284165437|ref|YP_003403716.1| - 0.051 13.8 0.4 0.33 11.1 0.0 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4179) Glyco_transf_36 PF06165.6 gi|284165439|ref|YP_003403718.1| - 0.0042 16.9 3.7 0.74 9.6 0.4 2.3 1 1 1 2 2 2 2 Glycosyltransferase family 36 Slp PF03843.8 gi|284165439|ref|YP_003403718.1| - 0.059 12.3 0.1 1.8 7.5 0.0 2.3 1 1 1 2 2 2 0 Outer membrane lipoprotein Slp family GYD PF08734.6 gi|284165439|ref|YP_003403718.1| - 0.5 10.1 8.2 0.24 11.1 0.2 2.8 1 1 1 3 3 3 0 GYD domain SIS PF01380.17 gi|284165440|ref|YP_003403719.1| - 2.4e-48 163.0 0.1 8.1e-23 80.4 0.1 2.6 3 0 0 3 3 3 2 SIS domain GATase_6 PF13522.1 gi|284165440|ref|YP_003403719.1| - 2.5e-25 88.9 0.2 5.2e-25 87.9 0.1 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|284165440|ref|YP_003403719.1| - 3.7e-22 78.5 0.2 6.4e-17 61.3 0.0 2.4 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|284165440|ref|YP_003403719.1| - 1.5e-20 73.1 0.0 2.5e-20 72.4 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|284165440|ref|YP_003403719.1| - 4.6e-05 22.2 0.0 7.5e-05 21.5 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II NTP_transferase PF00483.18 gi|284165441|ref|YP_003403720.1| - 9.5e-33 113.5 0.0 1.3e-32 113.1 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|284165441|ref|YP_003403720.1| - 7.1e-16 58.6 0.2 1e-15 58.1 0.1 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|284165441|ref|YP_003403720.1| - 1.4e-12 46.5 17.1 7.4e-07 28.4 2.2 4.8 2 1 3 5 5 5 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|284165441|ref|YP_003403720.1| - 0.0014 18.1 16.1 0.017 14.6 2.7 4.1 2 1 2 4 4 4 2 Hexapeptide repeat of succinyl-transferase IspD PF01128.14 gi|284165441|ref|YP_003403720.1| - 0.019 14.4 0.1 0.034 13.6 0.0 1.4 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Urocanase PF01175.13 gi|284165441|ref|YP_003403720.1| - 0.13 10.3 3.7 0.09 10.7 0.6 1.8 2 0 0 2 2 2 0 Urocanase UDPG_MGDP_dh_N PF03721.9 gi|284165443|ref|YP_003403722.1| - 1.7e-36 125.3 0.0 2.8e-36 124.6 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|284165443|ref|YP_003403722.1| - 2.6e-16 59.6 0.0 4.1e-16 58.9 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|284165443|ref|YP_003403722.1| - 9.3e-14 51.4 0.0 1.4e-12 47.7 0.0 2.5 3 0 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.10 gi|284165443|ref|YP_003403722.1| - 5.1e-11 42.6 0.0 1.1e-10 41.5 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|284165443|ref|YP_003403722.1| - 5e-06 26.3 0.0 7.7e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|284165443|ref|YP_003403722.1| - 9.5e-06 25.3 0.0 2.4e-05 24.0 0.0 1.7 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|284165443|ref|YP_003403722.1| - 3.5e-05 24.1 0.0 9.3e-05 22.7 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.11 gi|284165443|ref|YP_003403722.1| - 0.0001 21.7 0.0 0.00018 20.9 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.14 gi|284165443|ref|YP_003403722.1| - 0.00058 19.0 0.0 0.002 17.2 0.0 1.8 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|284165443|ref|YP_003403722.1| - 0.0041 17.0 0.0 0.011 15.7 0.0 1.8 1 0 0 1 1 1 1 TrkA-N domain Rossmann-like PF10727.4 gi|284165443|ref|YP_003403722.1| - 0.079 12.6 0.0 0.17 11.5 0.0 1.5 1 0 0 1 1 1 0 Rossmann-like domain Asparaginase PF00710.15 gi|284165443|ref|YP_003403722.1| - 0.13 11.0 0.0 0.2 10.4 0.0 1.2 1 0 0 1 1 1 0 Asparaginase Semialdhyde_dh PF01118.19 gi|284165443|ref|YP_003403722.1| - 0.14 12.4 0.0 0.4 11.0 0.0 1.8 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Epimerase PF01370.16 gi|284165444|ref|YP_003403723.1| - 1.3e-60 204.7 0.1 2.6e-60 203.8 0.0 1.4 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|284165444|ref|YP_003403723.1| - 5.2e-26 90.9 0.0 7.2e-26 90.5 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|284165444|ref|YP_003403723.1| - 3.4e-18 65.5 0.0 2.1e-17 62.9 0.0 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|284165444|ref|YP_003403723.1| - 1e-17 63.9 0.0 1.4e-17 63.5 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|284165444|ref|YP_003403723.1| - 6.1e-16 58.0 0.2 1.7e-14 53.3 0.2 2.2 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|284165444|ref|YP_003403723.1| - 1.6e-11 44.5 0.0 3.2e-11 43.5 0.0 1.5 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|284165444|ref|YP_003403723.1| - 1.2e-07 31.8 0.2 1.2e-07 31.8 0.1 1.7 2 0 0 2 2 2 1 short chain dehydrogenase NmrA PF05368.8 gi|284165444|ref|YP_003403723.1| - 5e-06 25.9 0.1 1.4e-05 24.5 0.1 1.6 1 1 0 1 1 1 1 NmrA-like family KR PF08659.5 gi|284165444|ref|YP_003403723.1| - 0.00016 21.3 0.4 0.0004 20.0 0.3 1.8 1 1 0 1 1 1 1 KR domain Ldh_1_N PF00056.18 gi|284165444|ref|YP_003403723.1| - 0.0028 17.4 0.3 0.0048 16.7 0.2 1.4 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|284165444|ref|YP_003403723.1| - 0.063 12.2 0.2 0.098 11.6 0.1 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase Glycos_transf_2 PF00535.21 gi|284165445|ref|YP_003403724.1| - 2.9e-21 75.9 0.0 5.8e-21 74.8 0.0 1.5 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|284165445|ref|YP_003403724.1| - 8.3e-20 71.5 0.5 1.3e-19 70.9 0.4 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|284165445|ref|YP_003403724.1| - 3.7e-05 23.9 0.1 7e-05 23.0 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.1 gi|284165445|ref|YP_003403724.1| - 0.00011 21.9 2.6 0.00029 20.6 0.9 2.3 2 1 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|284165445|ref|YP_003403724.1| - 0.0028 16.9 0.0 0.97 8.6 0.0 2.3 2 0 0 2 2 2 2 Glycosyl transferase family 21 NTP_transf_3 PF12804.2 gi|284165445|ref|YP_003403724.1| - 0.038 14.0 0.0 0.059 13.4 0.0 1.3 1 0 0 1 1 1 0 MobA-like NTP transferase domain MerC PF03203.9 gi|284165445|ref|YP_003403724.1| - 0.63 10.4 4.0 1.4 9.3 2.8 1.5 1 0 0 1 1 1 0 MerC mercury resistance protein Polysacc_deac_1 PF01522.16 gi|284165446|ref|YP_003403725.1| - 1.8e-12 47.0 0.0 3e-12 46.2 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase UCR_Fe-S_N PF10399.4 gi|284165446|ref|YP_003403725.1| - 0.15 11.2 1.4 0.35 10.0 0.9 1.7 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Glyco_hydro_10 PF00331.15 gi|284165447|ref|YP_003403726.1| - 3.1e-39 134.8 0.1 4.7e-39 134.2 0.1 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 10 CarboxypepD_reg PF13620.1 gi|284165447|ref|YP_003403726.1| - 0.0045 17.0 0.4 2.1 8.4 0.0 2.3 2 0 0 2 2 2 2 Carboxypeptidase regulatory-like domain TAT_signal PF10518.4 gi|284165447|ref|YP_003403726.1| - 1 9.5 5.5 1.9 8.6 3.8 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence PIG-L PF02585.12 gi|284165448|ref|YP_003403727.1| - 6.8e-24 84.7 1.7 9.6e-24 84.3 1.2 1.2 1 0 0 1 1 1 1 GlcNAc-PI de-N-acetylase Vg_Tdu PF07545.9 gi|284165448|ref|YP_003403727.1| - 0.13 11.7 0.2 20 4.7 0.0 2.4 2 0 0 2 2 2 0 Vestigial/Tondu family WbqC PF08889.6 gi|284165449|ref|YP_003403728.1| - 1.8e-29 102.7 0.0 8.4e-20 71.1 0.1 2.1 2 0 0 2 2 2 2 WbqC-like protein family Seryl_tRNA_N PF02403.17 gi|284165449|ref|YP_003403728.1| - 2.8e-09 36.9 1.2 4.7e-09 36.2 0.8 1.4 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain Glyco_hydro_18 PF00704.23 gi|284165450|ref|YP_003403729.1| - 1.9e-105 353.1 9.0 1.9e-105 353.1 6.3 2.0 2 1 1 3 3 3 1 Glycosyl hydrolases family 18 CBM_5_12 PF02839.9 gi|284165450|ref|YP_003403729.1| - 1.2e-12 47.1 10.6 1.2e-12 47.1 7.4 3.3 3 0 0 3 3 3 1 Carbohydrate binding domain PKD PF00801.15 gi|284165450|ref|YP_003403729.1| - 7e-09 35.3 6.5 7e-09 35.3 4.5 3.5 4 1 0 4 4 4 1 PKD domain DUF111 PF01969.12 gi|284165452|ref|YP_003403731.1| - 2.6e-135 451.1 0.3 3.1e-135 450.8 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF111 Transcrip_reg PF01709.15 gi|284165452|ref|YP_003403731.1| - 0.14 11.2 0.0 0.29 10.2 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator AAA PF00004.24 gi|284165453|ref|YP_003403732.1| - 4.3e-101 334.3 0.0 1.6e-49 167.4 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|284165453|ref|YP_003403732.1| - 2.3e-29 101.1 0.0 1.7e-28 98.3 0.1 2.5 3 0 0 3 3 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|284165453|ref|YP_003403732.1| - 6.2e-15 54.8 0.0 6.7e-07 28.5 0.0 2.6 3 0 0 3 3 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|284165453|ref|YP_003403732.1| - 2.5e-14 53.6 0.0 5.7e-07 29.7 0.0 3.3 2 1 1 3 3 3 2 AAA ATPase domain CDC48_2 PF02933.12 gi|284165453|ref|YP_003403732.1| - 2.7e-14 52.5 0.1 1.2e-13 50.4 0.1 2.2 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_5 PF07728.9 gi|284165453|ref|YP_003403732.1| - 8.1e-14 51.5 2.3 9.4e-06 25.4 0.0 3.9 3 2 0 3 3 2 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|284165453|ref|YP_003403732.1| - 2.7e-13 50.2 0.3 0.00044 20.3 0.1 4.3 2 2 0 2 2 2 2 AAA domain AAA_2 PF07724.9 gi|284165453|ref|YP_003403732.1| - 5e-13 49.3 0.0 1.5e-05 24.9 0.0 2.8 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_17 PF13207.1 gi|284165453|ref|YP_003403732.1| - 4.7e-12 46.7 0.2 0.00014 22.6 0.0 3.2 4 0 0 4 4 2 2 AAA domain AAA_33 PF13671.1 gi|284165453|ref|YP_003403732.1| - 2.8e-11 43.4 0.0 3.1e-05 23.8 0.0 2.7 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.8 gi|284165453|ref|YP_003403732.1| - 9.7e-11 40.9 0.0 0.0003 19.6 0.0 3.1 3 0 0 3 3 3 2 TIP49 C-terminus AAA_19 PF13245.1 gi|284165453|ref|YP_003403732.1| - 2.7e-09 36.6 0.9 0.0012 18.5 0.1 2.9 2 0 0 2 2 2 2 Part of AAA domain AAA_14 PF13173.1 gi|284165453|ref|YP_003403732.1| - 5.4e-09 36.0 0.0 0.0016 18.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|284165453|ref|YP_003403732.1| - 5.4e-09 35.7 0.1 0.0057 16.0 0.0 3.1 3 0 0 3 3 3 2 IstB-like ATP binding protein AAA_25 PF13481.1 gi|284165453|ref|YP_003403732.1| - 4.9e-08 32.6 5.7 0.94 8.8 0.1 4.6 2 2 1 4 4 4 2 AAA domain Zeta_toxin PF06414.7 gi|284165453|ref|YP_003403732.1| - 2.5e-07 29.9 0.0 0.022 13.8 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin AAA_18 PF13238.1 gi|284165453|ref|YP_003403732.1| - 2.6e-07 30.9 0.0 0.0071 16.6 0.0 2.7 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.17 gi|284165453|ref|YP_003403732.1| - 5.1e-07 29.8 0.0 0.047 13.8 0.0 2.5 2 0 0 2 2 2 2 RNA helicase Mg_chelatase PF01078.16 gi|284165453|ref|YP_003403732.1| - 9.2e-07 28.2 0.1 0.043 12.9 0.0 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_28 PF13521.1 gi|284165453|ref|YP_003403732.1| - 1.7e-06 28.0 0.0 0.014 15.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_3 PF07726.6 gi|284165453|ref|YP_003403732.1| - 5.3e-06 26.0 0.0 0.081 12.5 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|284165453|ref|YP_003403732.1| - 5.8e-06 25.8 0.1 0.14 11.6 0.0 3.2 3 1 0 3 3 3 2 Sigma-54 interaction domain Arch_ATPase PF01637.13 gi|284165453|ref|YP_003403732.1| - 8.1e-06 25.6 0.0 0.065 12.9 0.0 3.6 2 2 1 3 3 3 1 Archaeal ATPase NB-ARC PF00931.17 gi|284165453|ref|YP_003403732.1| - 1.4e-05 24.1 0.0 0.036 12.9 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain AAA_24 PF13479.1 gi|284165453|ref|YP_003403732.1| - 1.7e-05 24.5 0.2 0.052 13.1 0.0 2.7 2 0 0 2 2 2 2 AAA domain PhoH PF02562.11 gi|284165453|ref|YP_003403732.1| - 1.7e-05 24.1 0.6 0.16 11.1 0.0 3.1 3 0 0 3 3 3 2 PhoH-like protein DUF815 PF05673.8 gi|284165453|ref|YP_003403732.1| - 2e-05 23.6 0.0 0.18 10.7 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) KaiC PF06745.8 gi|284165453|ref|YP_003403732.1| - 2.7e-05 23.4 2.0 0.43 9.6 0.0 3.7 3 1 0 4 4 3 2 KaiC Sigma54_activ_2 PF14532.1 gi|284165453|ref|YP_003403732.1| - 3.5e-05 23.8 0.0 0.3 11.1 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain NACHT PF05729.7 gi|284165453|ref|YP_003403732.1| - 5.3e-05 22.9 0.2 0.26 10.9 0.0 3.6 4 0 0 4 4 4 1 NACHT domain ABC_tran PF00005.22 gi|284165453|ref|YP_003403732.1| - 6.4e-05 23.2 0.0 0.38 11.0 0.0 2.6 2 0 0 2 2 2 2 ABC transporter AAA_30 PF13604.1 gi|284165453|ref|YP_003403732.1| - 0.00011 21.8 0.0 0.66 9.5 0.0 2.8 2 0 0 2 2 2 2 AAA domain DUF2075 PF09848.4 gi|284165453|ref|YP_003403732.1| - 0.0002 20.4 0.0 0.25 10.2 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) SKI PF01202.17 gi|284165453|ref|YP_003403732.1| - 0.00022 21.0 0.0 0.28 11.0 0.0 2.5 2 0 0 2 2 2 1 Shikimate kinase AAA_11 PF13086.1 gi|284165453|ref|YP_003403732.1| - 0.0003 20.4 0.0 0.53 9.8 0.0 2.4 2 1 0 2 2 2 2 AAA domain Parvo_NS1 PF01057.12 gi|284165453|ref|YP_003403732.1| - 0.00036 19.4 0.2 0.42 9.4 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 NTPase_1 PF03266.10 gi|284165453|ref|YP_003403732.1| - 0.00041 20.0 0.5 1.9 8.1 0.0 3.5 2 1 1 3 3 3 2 NTPase IPT PF01745.11 gi|284165453|ref|YP_003403732.1| - 0.0014 17.8 0.9 0.45 9.6 0.0 2.8 3 0 0 3 3 3 1 Isopentenyl transferase ResIII PF04851.10 gi|284165453|ref|YP_003403732.1| - 0.0022 17.8 0.0 2.4 7.9 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit KAP_NTPase PF07693.9 gi|284165453|ref|YP_003403732.1| - 0.0022 17.0 0.0 2.4 7.0 0.0 2.9 2 1 0 3 3 3 1 KAP family P-loop domain Bac_DnaA PF00308.13 gi|284165453|ref|YP_003403732.1| - 0.0024 17.5 0.1 2 7.9 0.0 2.9 3 0 0 3 3 2 1 Bacterial dnaA protein UPF0079 PF02367.12 gi|284165453|ref|YP_003403732.1| - 0.0029 17.2 0.1 1.6 8.3 0.0 2.4 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 Viral_helicase1 PF01443.13 gi|284165453|ref|YP_003403732.1| - 0.012 15.1 0.0 1 8.8 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Vps4_C PF09336.5 gi|284165453|ref|YP_003403732.1| - 0.017 15.0 0.1 0.21 11.5 0.0 2.5 2 0 0 2 2 2 0 Vps4 C terminal oligomerisation domain Torsin PF06309.6 gi|284165453|ref|YP_003403732.1| - 0.018 14.9 0.0 3.8 7.4 0.0 2.4 2 0 0 2 2 2 0 Torsin ATP-synt_ab PF00006.20 gi|284165453|ref|YP_003403732.1| - 0.019 14.4 0.0 5.8 6.3 0.0 2.4 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain T2SE PF00437.15 gi|284165453|ref|YP_003403732.1| - 0.028 13.3 0.0 7.4 5.3 0.0 2.4 2 0 0 2 2 2 0 Type II/IV secretion system protein KTI12 PF08433.5 gi|284165453|ref|YP_003403732.1| - 0.033 13.3 0.0 9.5 5.3 0.0 2.7 3 0 0 3 3 2 0 Chromatin associated protein KTI12 CPT PF07931.7 gi|284165453|ref|YP_003403732.1| - 0.039 13.5 0.0 3.1 7.3 0.0 2.4 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein Arch_fla_DE PF04659.8 gi|284165453|ref|YP_003403732.1| - 0.056 13.2 0.0 0.7 9.7 0.0 2.6 3 0 0 3 3 2 0 Archaeal flagella protein Cytidylate_kin2 PF13189.1 gi|284165453|ref|YP_003403732.1| - 0.06 13.2 0.0 2.2 8.1 0.0 2.3 2 0 0 2 2 2 0 Cytidylate kinase-like family Guanylate_kin PF00625.16 gi|284165453|ref|YP_003403732.1| - 0.077 12.4 0.2 43 3.4 0.0 3.4 2 1 1 3 3 3 0 Guanylate kinase AFG1_ATPase PF03969.11 gi|284165453|ref|YP_003403732.1| - 0.079 11.7 0.0 1.8 7.2 0.0 2.2 2 0 0 2 2 2 0 AFG1-like ATPase DUF771 PF05595.6 gi|284165453|ref|YP_003403732.1| - 0.14 12.1 0.0 0.51 10.2 0.0 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF771) EamA PF00892.15 gi|284165454|ref|YP_003403733.1| - 8.1e-31 106.6 22.6 2.5e-16 59.8 4.8 2.1 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.11 gi|284165454|ref|YP_003403733.1| - 0.0017 18.0 2.9 0.0017 18.0 2.0 2.5 2 0 0 2 2 2 1 Triose-phosphate Transporter family DUF2892 PF11127.3 gi|284165454|ref|YP_003403733.1| - 0.073 12.9 0.8 0.073 12.9 0.6 5.3 5 2 1 6 6 6 0 Protein of unknown function (DUF2892) DUF1682 PF07946.9 gi|284165454|ref|YP_003403733.1| - 0.075 11.8 0.0 0.11 11.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1682) UPF0233 PF06781.7 gi|284165454|ref|YP_003403733.1| - 0.13 11.9 0.4 15 5.2 0.1 2.9 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0233) EmrE PF13536.1 gi|284165454|ref|YP_003403733.1| - 3.5 7.8 35.5 0.3 11.3 6.4 3.8 2 2 2 4 4 4 0 Multidrug resistance efflux transporter RNase_H PF00075.19 gi|284165456|ref|YP_003403735.1| - 0.00067 20.0 0.0 0.00086 19.6 0.0 1.1 1 0 0 1 1 1 1 RNase H DUF2240 PF09999.4 gi|284165457|ref|YP_003403736.1| - 2.2e-51 173.0 0.4 2.6e-51 172.8 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) DUF1470 PF07336.6 gi|284165457|ref|YP_003403736.1| - 1.6 9.0 8.5 2.1 8.6 5.9 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1470) SoxE PF06525.6 gi|284165459|ref|YP_003403738.1| - 0.031 13.5 0.0 0.077 12.2 0.0 1.6 1 0 0 1 1 1 0 Sulfocyanin (SoxE) Metalloenzyme PF01676.13 gi|284165460|ref|YP_003403739.1| - 0.02 14.2 0.1 0.028 13.7 0.1 1.2 1 0 0 1 1 1 0 Metalloenzyme superfamily Sulfatase PF00884.18 gi|284165461|ref|YP_003403740.1| - 3.2e-24 85.6 0.0 5.5e-24 84.9 0.0 1.3 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|284165461|ref|YP_003403740.1| - 1.7e-10 40.7 0.5 1.9e-08 34.0 0.3 2.9 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.13 gi|284165461|ref|YP_003403740.1| - 0.0044 16.4 0.0 0.011 15.1 0.0 1.6 2 0 0 2 2 2 1 Metalloenzyme superfamily PMEI PF04043.10 gi|284165461|ref|YP_003403740.1| - 0.1 12.4 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 Plant invertase/pectin methylesterase inhibitor Polysacc_synt PF01943.12 gi|284165462|ref|YP_003403741.1| - 5.9e-32 111.0 19.5 5.9e-32 111.0 13.5 2.0 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|284165462|ref|YP_003403741.1| - 5.8e-23 81.6 26.3 5.8e-23 81.6 18.2 2.5 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|284165462|ref|YP_003403741.1| - 1.6e-17 63.6 47.4 2.2e-13 50.2 10.8 4.0 4 1 0 4 4 4 3 Polysaccharide biosynthesis C-terminal domain MatE PF01554.13 gi|284165462|ref|YP_003403741.1| - 9.3e-07 28.6 22.7 2.1e-05 24.1 4.6 3.4 3 1 1 4 4 4 2 MatE Rft-1 PF04506.8 gi|284165462|ref|YP_003403741.1| - 0.00089 17.7 1.8 0.00089 17.7 1.2 2.0 2 1 1 3 3 3 1 Rft protein HAD_2 PF13419.1 gi|284165463|ref|YP_003403742.1| - 5.2e-32 111.4 0.2 6.1e-32 111.2 0.1 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|284165463|ref|YP_003403742.1| - 3.1e-14 53.8 2.7 1.3e-13 51.8 1.9 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|284165463|ref|YP_003403742.1| - 7.4e-11 41.6 0.2 1.6e-10 40.5 0.1 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.2 gi|284165463|ref|YP_003403742.1| - 9.4e-05 22.6 0.0 0.00013 22.2 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Acid_PPase PF12689.2 gi|284165463|ref|YP_003403742.1| - 0.052 13.1 0.1 0.1 12.2 0.0 1.4 1 1 0 1 1 1 0 Acid Phosphatase Na_H_Exchanger PF00999.16 gi|284165464|ref|YP_003403743.1| - 6.2e-55 186.2 40.5 7.6e-55 185.9 28.1 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_C PF02080.16 gi|284165465|ref|YP_003403744.1| - 7e-19 67.1 0.2 5.5e-18 64.3 0.0 2.1 2 0 0 2 2 2 1 TrkA-C domain MGS PF02142.17 gi|284165466|ref|YP_003403745.1| - 1.1e-15 57.3 0.0 1.3e-15 57.0 0.0 1.1 1 0 0 1 1 1 1 MGS-like domain adh_short PF00106.20 gi|284165467|ref|YP_003403746.1| - 4.2e-26 91.8 0.7 5.4e-26 91.5 0.5 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|284165467|ref|YP_003403746.1| - 5.7e-15 55.7 0.0 7.2e-15 55.3 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|284165467|ref|YP_003403746.1| - 1.7e-06 27.7 0.2 2.4e-06 27.3 0.1 1.2 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|284165467|ref|YP_003403746.1| - 0.00021 21.3 0.2 0.00034 20.6 0.1 1.5 1 1 0 1 1 1 1 NADH(P)-binding F420_oxidored PF03807.12 gi|284165467|ref|YP_003403746.1| - 0.026 14.9 0.0 0.15 12.4 0.0 2.0 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent HMA PF00403.21 gi|284165468|ref|YP_003403747.1| - 4.2e-08 33.2 0.5 2.3e-07 30.8 0.4 1.8 1 1 0 1 1 1 1 Heavy-metal-associated domain E1-E2_ATPase PF00122.15 gi|284165469|ref|YP_003403748.1| - 6.2e-48 162.8 0.0 1.2e-47 161.8 0.0 1.4 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|284165469|ref|YP_003403748.1| - 6e-46 157.5 8.3 1e-45 156.7 5.8 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|284165469|ref|YP_003403748.1| - 1.5e-14 54.6 1.4 3.7e-14 53.3 1.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|284165469|ref|YP_003403748.1| - 1e-09 38.3 0.0 2.6e-09 37.0 0.0 1.8 1 0 0 1 1 1 1 Heavy-metal-associated domain Hydrolase_3 PF08282.7 gi|284165469|ref|YP_003403748.1| - 2.1e-06 27.5 0.4 0.00029 20.5 0.1 2.8 3 0 0 3 3 3 1 haloacid dehalogenase-like hydrolase Methyltransf_11 PF08241.7 gi|284165470|ref|YP_003403749.1| - 2.1e-19 69.7 0.1 3.4e-19 69.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|284165470|ref|YP_003403749.1| - 6.9e-18 64.6 0.0 8.8e-18 64.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|284165470|ref|YP_003403749.1| - 1.1e-17 64.6 0.2 2.5e-17 63.4 0.1 1.6 2 0 0 2 2 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|284165470|ref|YP_003403749.1| - 1.2e-17 63.8 0.0 1.8e-17 63.2 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|284165470|ref|YP_003403749.1| - 3.6e-14 52.7 1.0 3.6e-14 52.7 0.7 1.7 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|284165470|ref|YP_003403749.1| - 6.8e-14 52.0 0.1 2.4e-13 50.2 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|284165470|ref|YP_003403749.1| - 8.6e-12 45.0 0.0 1.3e-11 44.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|284165470|ref|YP_003403749.1| - 2.3e-09 37.6 0.1 3.7e-09 36.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|284165470|ref|YP_003403749.1| - 5.3e-09 35.9 0.1 7.9e-09 35.3 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.9 gi|284165470|ref|YP_003403749.1| - 9.2e-08 31.6 0.1 1.4e-07 31.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.15 gi|284165470|ref|YP_003403749.1| - 1.3e-06 27.7 0.0 1.8e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PrmA PF06325.8 gi|284165470|ref|YP_003403749.1| - 4.4e-06 26.0 0.2 5.7e-06 25.6 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.14 gi|284165470|ref|YP_003403749.1| - 6.9e-06 25.7 0.0 9e-06 25.3 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TehB PF03848.9 gi|284165470|ref|YP_003403749.1| - 0.0059 15.7 0.0 0.0082 15.3 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB TPMT PF05724.6 gi|284165470|ref|YP_003403749.1| - 0.0098 15.3 0.0 0.014 14.8 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_15 PF09445.5 gi|284165470|ref|YP_003403749.1| - 0.026 14.0 0.0 0.033 13.7 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase MetW PF07021.7 gi|284165470|ref|YP_003403749.1| - 0.032 13.5 0.0 0.047 13.0 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Met_10 PF02475.11 gi|284165470|ref|YP_003403749.1| - 0.12 11.9 0.0 0.16 11.5 0.0 1.1 1 0 0 1 1 1 0 Met-10+ like-protein OpuAC PF04069.7 gi|284165470|ref|YP_003403749.1| - 0.12 11.6 0.0 0.14 11.4 0.0 1.2 1 0 0 1 1 1 0 Substrate binding domain of ABC-type glycine betaine transport system FmrO PF07091.6 gi|284165470|ref|YP_003403749.1| - 0.12 11.2 0.0 0.17 10.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) DehI PF10778.4 gi|284165471|ref|YP_003403750.1| - 8.8e-13 48.0 0.0 3.2e-06 26.7 0.0 2.6 2 1 1 3 3 3 2 Halocarboxylic acid dehydrogenase DehI HAD_2 PF13419.1 gi|284165472|ref|YP_003403751.1| - 2e-28 99.8 0.1 2.4e-28 99.5 0.1 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|284165472|ref|YP_003403751.1| - 8.6e-09 36.1 0.1 4.1e-08 33.8 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|284165472|ref|YP_003403751.1| - 0.00027 21.1 0.0 0.00032 20.9 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|284165472|ref|YP_003403751.1| - 0.00046 19.8 0.0 0.0017 18.0 0.0 1.9 2 0 0 2 2 2 1 HAD-hyrolase-like Put_Phosphatase PF06888.7 gi|284165472|ref|YP_003403751.1| - 0.0046 16.1 0.0 0.0068 15.5 0.0 1.2 1 0 0 1 1 1 1 Putative Phosphatase MarR_2 PF12802.2 gi|284165473|ref|YP_003403752.1| - 1e-06 28.2 0.1 1.4e-06 27.8 0.1 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|284165473|ref|YP_003403752.1| - 1.5e-06 27.7 0.0 2e-06 27.4 0.0 1.1 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|284165473|ref|YP_003403752.1| - 1.2e-05 24.6 0.0 1.6e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|284165473|ref|YP_003403752.1| - 3.4e-05 23.5 0.1 4.4e-05 23.1 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|284165473|ref|YP_003403752.1| - 5e-05 23.5 0.0 7e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.12 gi|284165473|ref|YP_003403752.1| - 5.3e-05 22.6 0.0 6.3e-05 22.4 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit TrmB PF01978.14 gi|284165473|ref|YP_003403752.1| - 0.00028 20.5 0.0 0.00037 20.1 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|284165473|ref|YP_003403752.1| - 0.00087 18.8 0.9 0.0013 18.3 0.6 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain GntR PF00392.16 gi|284165473|ref|YP_003403752.1| - 0.0016 17.8 0.3 0.0022 17.4 0.2 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_36 PF13730.1 gi|284165473|ref|YP_003403752.1| - 0.0035 17.4 0.0 0.0073 16.4 0.0 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|284165473|ref|YP_003403752.1| - 0.0036 16.9 0.1 0.0044 16.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.15 gi|284165473|ref|YP_003403752.1| - 0.0057 16.7 0.1 0.0077 16.3 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_12 PF08461.5 gi|284165473|ref|YP_003403752.1| - 0.011 15.4 0.1 0.018 14.7 0.0 1.4 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_9 PF08221.6 gi|284165473|ref|YP_003403752.1| - 0.017 14.9 0.0 0.023 14.5 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_11 PF08279.7 gi|284165473|ref|YP_003403752.1| - 0.021 14.4 0.1 0.03 13.9 0.1 1.2 1 0 0 1 1 1 0 HTH domain HTH_43 PF09904.4 gi|284165473|ref|YP_003403752.1| - 0.037 13.8 0.0 0.048 13.4 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn helix RepL PF05732.6 gi|284165473|ref|YP_003403752.1| - 0.069 12.3 0.0 0.079 12.1 0.0 1.1 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_28 PF13518.1 gi|284165473|ref|YP_003403752.1| - 0.079 12.9 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Mga PF08280.6 gi|284165473|ref|YP_003403752.1| - 0.092 12.5 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain B-block_TFIIIC PF04182.7 gi|284165473|ref|YP_003403752.1| - 0.096 12.5 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_AsnC-type PF13404.1 gi|284165473|ref|YP_003403752.1| - 0.1 12.1 0.3 0.2 11.1 0.2 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Abhydrolase_6 PF12697.2 gi|284165474|ref|YP_003403753.1| - 7.2e-39 133.9 1.8 8.6e-39 133.7 1.2 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|284165474|ref|YP_003403753.1| - 5.7e-21 75.1 0.2 2.4e-20 73.0 0.1 1.8 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|284165474|ref|YP_003403753.1| - 2.3e-19 69.5 0.0 1.8e-18 66.7 0.0 2.0 1 1 0 1 1 1 1 Alpha/beta hydrolase family Ndr PF03096.9 gi|284165474|ref|YP_003403753.1| - 9.5e-05 21.0 0.0 0.0002 19.9 0.0 1.5 1 1 0 1 1 1 1 Ndr family Abhydrolase_4 PF08386.5 gi|284165474|ref|YP_003403753.1| - 0.0065 16.3 0.0 0.014 15.2 0.0 1.5 1 0 0 1 1 1 1 TAP-like protein Hydrolase_4 PF12146.3 gi|284165474|ref|YP_003403753.1| - 0.035 13.9 0.1 0.081 12.7 0.0 1.7 1 0 0 1 1 1 0 Putative lysophospholipase DLH PF01738.13 gi|284165474|ref|YP_003403753.1| - 0.061 12.5 0.0 0.99 8.6 0.0 2.1 2 0 0 2 2 2 0 Dienelactone hydrolase family Glyoxalase_2 PF12681.2 gi|284165475|ref|YP_003403754.1| - 1.1e-16 61.4 0.1 1.3e-16 61.1 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|284165475|ref|YP_003403754.1| - 3.3e-15 56.1 0.0 3.9e-15 55.9 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|284165475|ref|YP_003403754.1| - 6.9e-14 51.7 0.0 7.9e-14 51.5 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|284165475|ref|YP_003403754.1| - 6e-07 29.5 0.1 8.2e-07 29.0 0.1 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain DZR PF12773.2 gi|284165476|ref|YP_003403755.1| - 0.016 15.0 0.9 0.025 14.4 0.6 1.2 1 0 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|284165476|ref|YP_003403755.1| - 2.8 7.9 4.9 17 5.4 3.4 2.0 1 1 0 1 1 1 0 Zinc ribbon domain OMPdecase PF00215.19 gi|284165477|ref|YP_003403756.1| - 1.3e-34 119.5 0.0 1.5e-34 119.4 0.0 1.0 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family DUF2859 PF11072.3 gi|284165477|ref|YP_003403756.1| - 0.11 11.9 0.0 0.27 10.6 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2859) zf-B_box PF00643.19 gi|284165479|ref|YP_003403758.1| - 0.00058 19.6 4.9 0.0031 17.3 0.9 2.1 2 0 0 2 2 2 1 B-box zinc finger zf-HIT PF04438.11 gi|284165479|ref|YP_003403758.1| - 0.011 15.3 5.2 0.016 14.8 1.2 2.1 2 0 0 2 2 2 0 HIT zinc finger zf-C3HC4_2 PF13923.1 gi|284165479|ref|YP_003403758.1| - 0.06 13.3 5.0 0.31 11.0 3.4 1.9 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-dskA_traR PF01258.12 gi|284165479|ref|YP_003403758.1| - 0.15 11.8 0.7 0.15 11.8 0.5 2.5 3 0 0 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger DZR PF12773.2 gi|284165479|ref|YP_003403758.1| - 0.44 10.3 10.2 2 8.3 0.3 2.0 1 1 1 2 2 2 0 Double zinc ribbon DUF3795 PF12675.2 gi|284165479|ref|YP_003403758.1| - 0.45 10.7 7.0 0.53 10.5 4.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3795) Prok-RING_2 PF14445.1 gi|284165479|ref|YP_003403758.1| - 0.59 10.1 5.8 0.81 9.6 4.0 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 2 zf-C2HC5 PF06221.8 gi|284165479|ref|YP_003403758.1| - 0.91 9.3 7.5 0.5 10.1 3.7 1.7 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type PolC_DP2 PF03833.8 gi|284165479|ref|YP_003403758.1| - 2.7 5.5 4.4 2.7 5.5 3.0 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-C3HC4_3 PF13920.1 gi|284165479|ref|YP_003403758.1| - 3.1 7.5 8.5 12 5.7 5.9 1.8 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) GTP_EFTU PF00009.22 gi|284165480|ref|YP_003403759.1| - 5.9e-35 120.4 0.0 8.7e-35 119.8 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|284165480|ref|YP_003403759.1| - 1.4e-15 57.2 0.0 3.7e-15 55.9 0.0 1.8 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|284165480|ref|YP_003403759.1| - 6.9e-11 42.1 2.6 7.8e-11 41.9 0.2 2.3 2 0 0 2 2 2 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|284165480|ref|YP_003403759.1| - 0.0037 16.8 0.3 0.0094 15.5 0.2 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.18 gi|284165480|ref|YP_003403759.1| - 0.011 15.6 0.0 0.025 14.5 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase ATP_bind_1 PF03029.12 gi|284165480|ref|YP_003403759.1| - 0.015 14.8 0.3 0.18 11.3 0.0 2.0 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Polysacc_deac_1 PF01522.16 gi|284165480|ref|YP_003403759.1| - 0.05 13.2 0.0 0.092 12.3 0.0 1.4 1 0 0 1 1 1 0 Polysaccharide deacetylase P5CR_dimer PF14748.1 gi|284165481|ref|YP_003403760.1| - 4e-37 126.4 2.3 6.6e-37 125.7 1.6 1.4 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.12 gi|284165481|ref|YP_003403760.1| - 8.4e-18 64.5 0.8 3.7e-17 62.5 0.0 2.4 2 1 1 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|284165481|ref|YP_003403760.1| - 2.3e-06 27.5 0.0 5.5e-06 26.3 0.0 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase PDH PF02153.12 gi|284165481|ref|YP_003403760.1| - 7.9e-06 24.9 0.2 0.0063 15.4 0.1 2.1 2 0 0 2 2 2 2 Prephenate dehydrogenase 3HCDH_N PF02737.13 gi|284165481|ref|YP_003403760.1| - 0.00068 19.3 0.6 0.0015 18.2 0.0 2.0 2 1 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|284165481|ref|YP_003403760.1| - 0.00097 18.9 2.5 0.042 13.5 1.7 2.4 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TrkA_N PF02254.13 gi|284165481|ref|YP_003403760.1| - 0.0012 18.7 0.6 0.0052 16.7 0.1 2.3 2 1 0 2 2 1 1 TrkA-N domain CoA_binding PF02629.14 gi|284165481|ref|YP_003403760.1| - 0.0023 18.4 0.9 0.17 12.3 0.0 2.8 3 0 0 3 3 3 1 CoA binding domain ApbA PF02558.11 gi|284165481|ref|YP_003403760.1| - 0.0043 16.5 1.3 0.022 14.1 0.9 2.0 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA dTMP_synthase PF02593.9 gi|284165481|ref|YP_003403760.1| - 0.0062 15.8 0.0 0.05 12.9 0.0 1.9 1 1 1 2 2 2 1 Thymidylate synthase GFO_IDH_MocA PF01408.17 gi|284165481|ref|YP_003403760.1| - 0.011 16.2 1.4 0.086 13.3 0.0 2.6 2 1 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold IlvN PF07991.7 gi|284165481|ref|YP_003403760.1| - 0.015 14.6 0.0 0.028 13.7 0.0 1.4 1 1 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain ThiF PF00899.16 gi|284165481|ref|YP_003403760.1| - 0.018 14.8 3.5 0.071 12.9 0.2 2.5 1 1 1 2 2 2 0 ThiF family Ead_Ea22 PF13935.1 gi|284165481|ref|YP_003403760.1| - 0.077 13.3 1.4 0.87 9.9 0.1 2.3 2 1 0 2 2 2 0 Ead/Ea22-like protein CoA_binding_2 PF13380.1 gi|284165481|ref|YP_003403760.1| - 0.13 12.4 0.5 0.35 11.0 0.1 1.9 2 0 0 2 2 2 0 CoA binding domain Methyltransf_26 PF13659.1 gi|284165481|ref|YP_003403760.1| - 0.71 9.9 3.0 2.3 8.3 2.1 2.0 1 1 0 1 1 1 0 Methyltransferase domain AA_kinase PF00696.23 gi|284165482|ref|YP_003403761.1| - 1.2e-41 142.8 1.1 1.4e-41 142.6 0.8 1.0 1 0 0 1 1 1 1 Amino acid kinase family PGK PF00162.14 gi|284165482|ref|YP_003403761.1| - 0.029 12.9 0.2 0.046 12.2 0.2 1.4 1 1 0 1 1 1 0 Phosphoglycerate kinase Lipase_GDSL_2 PF13472.1 gi|284165482|ref|YP_003403761.1| - 0.082 13.0 0.2 0.27 11.3 0.2 2.0 1 1 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family Snf7 PF03357.16 gi|284165482|ref|YP_003403761.1| - 0.083 12.2 0.1 0.39 10.0 0.0 2.0 2 0 0 2 2 2 0 Snf7 Aldedh PF00171.17 gi|284165483|ref|YP_003403762.1| - 1.6e-25 89.4 3.2 1e-21 76.8 0.7 2.3 1 1 1 2 2 2 2 Aldehyde dehydrogenase family Pex26 PF07163.7 gi|284165483|ref|YP_003403762.1| - 0.096 11.5 0.5 0.18 10.7 0.3 1.4 1 0 0 1 1 1 0 Pex26 protein MCH PF02289.11 gi|284165484|ref|YP_003403763.1| - 2.1e-85 286.5 0.0 2.4e-85 286.3 0.0 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) DUF77 PF01910.12 gi|284165485|ref|YP_003403764.1| - 5.2e-24 83.7 0.6 6e-24 83.5 0.4 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF77 zinc_ribbon_5 PF13719.1 gi|284165487|ref|YP_003403766.1| - 0.00019 20.9 0.5 0.00042 19.8 0.3 1.6 1 1 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|284165487|ref|YP_003403766.1| - 0.00029 20.4 0.5 0.00055 19.5 0.3 1.5 1 1 0 1 1 1 1 zinc-ribbon domain Stc1 PF12898.2 gi|284165487|ref|YP_003403766.1| - 0.00074 19.5 0.2 0.0012 18.8 0.2 1.3 1 1 0 1 1 1 1 Stc1 domain Zn_Tnp_IS1595 PF12760.2 gi|284165487|ref|YP_003403766.1| - 0.0018 18.0 1.4 0.052 13.3 0.1 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|284165487|ref|YP_003403766.1| - 0.0046 16.6 0.8 0.74 9.5 0.0 2.1 2 0 0 2 2 2 1 RNA polymerases M/15 Kd subunit PhnA_Zn_Ribbon PF08274.7 gi|284165487|ref|YP_003403766.1| - 0.011 15.5 2.4 1.5 8.6 0.3 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon HypA PF01155.14 gi|284165487|ref|YP_003403766.1| - 0.011 15.3 0.1 0.012 15.2 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|284165487|ref|YP_003403766.1| - 0.04 13.8 0.8 5.1 7.1 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain TFIIS_C PF01096.13 gi|284165487|ref|YP_003403766.1| - 0.05 13.2 2.5 0.87 9.2 0.3 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) ADK_lid PF05191.9 gi|284165487|ref|YP_003403766.1| - 0.059 13.0 1.4 0.22 11.1 1.0 1.8 1 1 0 1 1 1 0 Adenylate kinase, active site lid Ribosomal_L44 PF00935.14 gi|284165487|ref|YP_003403766.1| - 0.068 13.1 0.1 5 7.1 0.0 2.1 2 0 0 2 2 2 0 Ribosomal protein L44 zf-trcl PF13451.1 gi|284165487|ref|YP_003403766.1| - 0.069 12.7 0.8 2.7 7.6 0.1 2.1 2 0 0 2 2 2 0 Probable zinc-binding domain Elf1 PF05129.8 gi|284165487|ref|YP_003403766.1| - 0.095 12.4 0.5 1.8 8.2 0.0 2.0 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like OrfB_Zn_ribbon PF07282.6 gi|284165487|ref|YP_003403766.1| - 0.11 12.1 1.0 0.21 11.2 0.7 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain DZR PF12773.2 gi|284165487|ref|YP_003403766.1| - 0.13 12.1 1.6 0.27 11.0 1.1 1.6 1 1 0 1 1 1 0 Double zinc ribbon UPF0547 PF10571.4 gi|284165487|ref|YP_003403766.1| - 0.27 10.9 2.6 12 5.6 0.4 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 YhfH PF14149.1 gi|284165487|ref|YP_003403766.1| - 0.29 10.9 1.5 12 5.8 0.2 2.3 2 0 0 2 2 2 0 YhfH-like protein zf-C2H2_6 PF13912.1 gi|284165487|ref|YP_003403766.1| - 0.6 10.1 2.7 13 5.8 0.4 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger Nudix_N_2 PF14803.1 gi|284165487|ref|YP_003403766.1| - 2 8.1 5.0 13 5.5 3.4 2.0 1 1 1 2 2 2 0 Nudix N-terminal DNA_RNApol_7kD PF03604.8 gi|284165487|ref|YP_003403766.1| - 2.1 7.8 5.3 38 3.8 3.7 2.1 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-dskA_traR PF01258.12 gi|284165487|ref|YP_003403766.1| - 4 7.2 5.7 4.2 7.1 0.4 2.2 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger DUF4112 PF13430.1 gi|284165488|ref|YP_003403767.1| - 5.7e-32 109.7 0.2 6.7e-32 109.5 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4112) PAS_9 PF13426.1 gi|284165489|ref|YP_003403768.1| - 3e-57 191.3 4.7 2.3e-17 63.2 0.0 5.5 5 0 0 5 5 5 5 PAS domain PAS PF00989.19 gi|284165489|ref|YP_003403768.1| - 5.7e-39 132.4 4.3 3.5e-13 49.3 0.0 5.7 5 1 1 6 6 6 3 PAS fold PAS_4 PF08448.5 gi|284165489|ref|YP_003403768.1| - 4.3e-38 129.7 18.8 3.8e-11 43.0 0.3 5.9 6 0 0 6 6 6 5 PAS fold PAS_3 PF08447.6 gi|284165489|ref|YP_003403768.1| - 4.6e-29 100.3 1.3 8e-16 57.9 0.0 5.8 6 0 0 6 6 5 3 PAS fold HATPase_c PF02518.21 gi|284165489|ref|YP_003403768.1| - 2.1e-27 95.0 0.0 6.4e-27 93.4 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|284165489|ref|YP_003403768.1| - 3e-21 74.4 0.1 7.8e-09 35.0 0.0 4.8 4 0 0 4 4 4 3 PAS domain PAS_7 PF12860.2 gi|284165489|ref|YP_003403768.1| - 4.2e-12 46.0 1.3 0.01 15.8 0.0 5.2 3 2 0 3 3 3 3 PAS fold HisKA PF00512.20 gi|284165489|ref|YP_003403768.1| - 3.2e-10 39.8 4.2 4.5e-10 39.3 0.0 3.3 2 1 1 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_11 PF14598.1 gi|284165489|ref|YP_003403768.1| - 0.00013 21.8 0.0 1.1 9.2 0.0 3.2 3 0 0 3 3 3 2 PAS domain HATPase_c_5 PF14501.1 gi|284165489|ref|YP_003403768.1| - 0.00048 19.8 0.0 0.0014 18.2 0.0 1.8 1 0 0 1 1 1 1 GHKL domain Noelin-1 PF12308.3 gi|284165489|ref|YP_003403768.1| - 0.0021 17.7 0.6 0.027 14.2 0.0 3.0 4 0 0 4 4 4 1 Neurogenesis glycoprotein HATPase_c_3 PF13589.1 gi|284165489|ref|YP_003403768.1| - 0.071 12.7 0.0 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.1 gi|284165489|ref|YP_003403768.1| - 0.14 12.4 0.0 7 6.9 0.0 3.6 4 0 0 4 4 4 0 PAS domain SnoaL_2 PF12680.2 gi|284165489|ref|YP_003403768.1| - 5.9 7.3 10.4 1.9 8.9 1.3 3.7 4 0 0 4 4 4 0 SnoaL-like domain GAF_2 PF13185.1 gi|284165490|ref|YP_003403769.1| - 2.5e-13 50.7 0.7 4.6e-13 49.9 0.5 1.4 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.1 gi|284165490|ref|YP_003403769.1| - 6.8e-10 39.1 0.1 1e-09 38.5 0.0 1.3 1 0 0 1 1 1 1 GAF domain GAF PF01590.21 gi|284165490|ref|YP_003403769.1| - 1.6e-08 34.8 0.1 2.4e-08 34.2 0.1 1.3 1 0 0 1 1 1 1 GAF domain PAS PF00989.19 gi|284165490|ref|YP_003403769.1| - 0.047 13.4 0.0 0.12 12.1 0.0 1.7 1 0 0 1 1 1 0 PAS fold Methyltrn_RNA_3 PF02598.12 gi|284165491|ref|YP_003403770.1| - 8e-49 166.5 0.0 9.5e-49 166.3 0.0 1.0 1 0 0 1 1 1 1 Putative RNA methyltransferase TOBE PF03459.12 gi|284165491|ref|YP_003403770.1| - 0.03 14.4 0.8 0.11 12.6 0.1 2.1 2 0 0 2 2 2 0 TOBE domain Ribosomal_L3 PF00297.17 gi|284165492|ref|YP_003403771.1| - 1.2e-89 300.1 0.3 1.4e-89 299.9 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L3 Ribosomal_L4 PF00573.17 gi|284165493|ref|YP_003403772.1| - 8.4e-43 145.9 0.1 9.6e-43 145.8 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Gag_p6 PF08705.6 gi|284165493|ref|YP_003403772.1| - 0.064 13.2 0.0 0.15 12.0 0.0 1.6 1 1 0 1 1 1 0 Gag protein p6 Ribosomal_L23 PF00276.15 gi|284165494|ref|YP_003403773.1| - 1.2e-18 66.7 0.6 1.9e-18 66.1 0.4 1.3 1 1 0 1 1 1 1 Ribosomal protein L23 DUF356 PF04009.7 gi|284165494|ref|YP_003403773.1| - 0.029 14.4 0.1 0.04 13.9 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF356) PB1 PF00564.19 gi|284165494|ref|YP_003403773.1| - 0.049 13.3 0.2 0.06 13.0 0.2 1.1 1 0 0 1 1 1 0 PB1 domain P2 PF07194.6 gi|284165494|ref|YP_003403773.1| - 0.066 13.0 0.7 0.11 12.4 0.5 1.3 1 0 0 1 1 1 0 P2 response regulator binding domain Ribosomal_L2_C PF03947.13 gi|284165495|ref|YP_003403774.1| - 2.6e-46 156.6 1.4 3.9e-46 156.0 1.0 1.3 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|284165495|ref|YP_003403774.1| - 6.3e-17 61.3 0.2 1.7e-16 59.9 0.0 1.8 2 0 0 2 2 2 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_S19 PF00203.16 gi|284165496|ref|YP_003403775.1| - 1.6e-27 94.9 0.0 2.4e-27 94.3 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein S19 Citrate_synt PF00285.16 gi|284165496|ref|YP_003403775.1| - 0.023 13.4 0.1 0.025 13.2 0.1 1.2 1 0 0 1 1 1 0 Citrate synthase Siah-Interact_N PF09032.6 gi|284165496|ref|YP_003403775.1| - 0.27 11.3 4.0 0.43 10.6 2.8 1.2 1 0 0 1 1 1 0 Siah interacting protein, N terminal Ribosomal_L22 PF00237.14 gi|284165497|ref|YP_003403776.1| - 1.9e-25 88.8 0.0 2.2e-25 88.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e ATP-grasp_5 PF13549.1 gi|284165497|ref|YP_003403776.1| - 0.11 11.7 0.2 0.14 11.3 0.1 1.3 1 0 0 1 1 1 0 ATP-grasp domain Skp1 PF01466.14 gi|284165497|ref|YP_003403776.1| - 0.11 12.5 0.0 0.21 11.6 0.0 1.5 1 0 0 1 1 1 0 Skp1 family, dimerisation domain KH_2 PF07650.12 gi|284165498|ref|YP_003403777.1| - 1.6e-16 59.6 0.3 4.4e-16 58.1 0.0 1.9 2 0 0 2 2 2 1 KH domain Ribosomal_S3_C PF00189.15 gi|284165498|ref|YP_003403777.1| - 1.7e-15 57.0 0.1 2.7e-15 56.3 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_1 PF00013.24 gi|284165498|ref|YP_003403777.1| - 0.0013 18.3 0.2 0.007 15.9 0.0 2.4 2 0 0 2 2 2 1 KH domain KH_3 PF13014.1 gi|284165498|ref|YP_003403777.1| - 0.024 14.3 0.4 0.1 12.2 0.3 2.2 1 0 0 1 1 1 0 KH domain KH_5 PF13184.1 gi|284165498|ref|YP_003403777.1| - 0.091 12.5 0.1 0.46 10.3 0.0 2.2 3 0 0 3 3 3 0 NusA-like KH domain Ribosomal_L29 PF00831.18 gi|284165499|ref|YP_003403778.1| - 5.9e-17 61.1 0.2 6.7e-17 60.9 0.1 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein Med9 PF07544.8 gi|284165499|ref|YP_003403778.1| - 0.0084 15.8 0.2 0.014 15.0 0.2 1.4 1 0 0 1 1 1 1 RNA polymerase II transcription mediator complex subunit 9 RPAP1_N PF08621.5 gi|284165499|ref|YP_003403778.1| - 0.34 10.5 3.1 0.62 9.6 2.2 1.4 1 0 0 1 1 1 0 RPAP1-like, N-terminal UPF0086 PF01868.11 gi|284165500|ref|YP_003403779.1| - 7.9e-25 86.3 0.0 1.1e-24 85.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_S17 PF00366.15 gi|284165501|ref|YP_003403780.1| - 6.2e-27 93.4 2.3 8e-27 93.0 1.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_L14 PF00238.14 gi|284165502|ref|YP_003403781.1| - 1.6e-37 127.9 0.1 1.8e-37 127.7 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e KOW PF00467.24 gi|284165503|ref|YP_003403782.1| - 3.4e-06 26.5 0.1 7e-06 25.5 0.1 1.5 1 0 0 1 1 1 1 KOW motif LTV PF04180.9 gi|284165503|ref|YP_003403782.1| - 0.11 12.0 1.3 0.11 12.0 0.9 1.0 1 0 0 1 1 1 0 Low temperature viability protein Ribosomal_S4e PF00900.15 gi|284165504|ref|YP_003403783.1| - 9.9e-26 89.2 0.0 1.6e-25 88.5 0.0 1.3 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.7 gi|284165504|ref|YP_003403783.1| - 7e-12 44.9 0.2 1.2e-11 44.1 0.2 1.4 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.20 gi|284165504|ref|YP_003403783.1| - 6.9e-06 25.4 0.0 1.1e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 S4 domain S4_2 PF13275.1 gi|284165504|ref|YP_003403783.1| - 0.0067 16.0 0.0 0.017 14.7 0.0 1.6 2 0 0 2 2 2 1 S4 domain Peptidase_S24 PF00717.18 gi|284165504|ref|YP_003403783.1| - 0.087 12.4 0.4 0.48 10.0 0.1 2.2 2 0 0 2 2 2 0 Peptidase S24-like Ribosomal_L5_C PF00673.16 gi|284165505|ref|YP_003403784.1| - 7.9e-23 80.0 0.0 1.2e-22 79.3 0.0 1.3 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|284165505|ref|YP_003403784.1| - 3.2e-16 58.8 0.0 1e-15 57.2 0.0 1.8 2 0 0 2 2 2 1 Ribosomal protein L5 Ribosomal_S14 PF00253.16 gi|284165506|ref|YP_003403785.1| - 8.1e-16 57.1 3.5 9.4e-16 56.9 2.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e DUF4428 PF14471.1 gi|284165506|ref|YP_003403785.1| - 0.0023 17.6 0.5 0.0028 17.3 0.3 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4428) DUF2616 PF11077.3 gi|284165506|ref|YP_003403785.1| - 0.083 12.3 0.4 0.084 12.3 0.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2616) DZR PF12773.2 gi|284165506|ref|YP_003403785.1| - 0.27 11.0 2.8 0.75 9.6 1.9 1.8 1 1 0 1 1 1 0 Double zinc ribbon DUF2039 PF10217.4 gi|284165506|ref|YP_003403785.1| - 0.77 9.8 3.6 6 6.9 2.5 2.0 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2039) Ribosomal_S8 PF00410.14 gi|284165507|ref|YP_003403786.1| - 8e-23 80.6 0.0 1.1e-22 80.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_L6 PF00347.18 gi|284165508|ref|YP_003403787.1| - 3.1e-24 85.2 0.2 1.7e-12 47.6 0.0 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 HSP20 PF00011.16 gi|284165508|ref|YP_003403787.1| - 0.2 11.5 6.2 0.52 10.2 0.1 3.4 2 2 2 4 4 4 0 Hsp20/alpha crystallin family Ribosomal_L32e PF01655.13 gi|284165509|ref|YP_003403788.1| - 4.4e-37 126.5 1.2 7.7e-37 125.7 0.7 1.5 2 0 0 2 2 2 1 Ribosomal protein L32 HHH_5 PF14520.1 gi|284165509|ref|YP_003403788.1| - 1.3e-13 50.9 10.1 1e-11 44.8 2.2 2.7 2 1 0 2 2 2 2 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.4 gi|284165509|ref|YP_003403788.1| - 2.2e-07 30.2 0.0 7.4e-07 28.6 0.0 1.8 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda HHH PF00633.18 gi|284165509|ref|YP_003403788.1| - 1.1e-06 27.9 2.1 0.045 13.4 0.0 2.9 3 0 0 3 3 3 2 Helix-hairpin-helix motif HHH_2 PF12826.2 gi|284165509|ref|YP_003403788.1| - 9.9e-06 25.3 0.7 1.9e-05 24.4 0.5 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|284165509|ref|YP_003403788.1| - 0.00063 19.6 0.0 0.0024 17.7 0.0 2.0 2 0 0 2 2 2 1 Pathogenicity locus FtsA PF14450.1 gi|284165509|ref|YP_003403788.1| - 0.024 14.4 0.0 0.034 13.9 0.0 1.2 1 0 0 1 1 1 0 Cell division protein FtsA HHH_3 PF12836.2 gi|284165509|ref|YP_003403788.1| - 0.04 13.8 0.1 2.3 8.2 0.0 2.5 1 1 1 2 2 2 0 Helix-hairpin-helix motif Ribosomal_L19e PF01280.15 gi|284165510|ref|YP_003403789.1| - 3e-57 192.5 7.8 3.3e-57 192.4 5.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e SHOCT PF09851.4 gi|284165510|ref|YP_003403789.1| - 0.0011 18.3 0.7 0.0011 18.3 0.5 2.1 2 0 0 2 2 2 1 Short C-terminal domain DUF3253 PF11625.3 gi|284165510|ref|YP_003403789.1| - 0.0047 16.7 2.0 0.49 10.3 0.1 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF3253) EF-hand_7 PF13499.1 gi|284165510|ref|YP_003403789.1| - 0.043 13.9 0.1 0.14 12.2 0.0 1.8 2 0 0 2 2 2 0 EF-hand domain pair Tropomyosin_1 PF12718.2 gi|284165510|ref|YP_003403789.1| - 0.055 13.3 0.7 0.093 12.5 0.5 1.4 1 0 0 1 1 1 0 Tropomyosin like DUF4019 PF13211.1 gi|284165510|ref|YP_003403789.1| - 0.071 13.3 1.4 0.19 12.0 0.2 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF4019) DUF1509 PF07420.6 gi|284165510|ref|YP_003403789.1| - 2.6 7.2 5.7 3 7.0 3.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1509) Ribosomal_L18p PF00861.17 gi|284165511|ref|YP_003403790.1| - 5e-37 126.7 0.0 6.2e-37 126.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal L18p/L5e family Ribosomal_S5 PF00333.15 gi|284165512|ref|YP_003403791.1| - 2.3e-28 97.6 0.8 5.1e-28 96.6 0.5 1.6 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.10 gi|284165512|ref|YP_003403791.1| - 5.4e-23 80.0 0.0 1.1e-22 79.0 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L30 PF00327.15 gi|284165513|ref|YP_003403792.1| - 4.8e-13 48.4 0.0 7.4e-13 47.8 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_L18e PF00828.14 gi|284165514|ref|YP_003403793.1| - 1e-26 93.8 0.8 1e-26 93.8 0.5 1.7 1 1 1 2 2 2 1 Ribosomal protein L18e/L15 Strep_his_triad PF04270.8 gi|284165514|ref|YP_003403793.1| - 0.094 12.4 0.4 0.24 11.1 0.3 1.6 1 0 0 1 1 1 0 Streptococcal histidine triad protein SecY PF00344.15 gi|284165515|ref|YP_003403794.1| - 1.8e-91 306.6 22.2 2.1e-91 306.4 15.4 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.4 gi|284165515|ref|YP_003403794.1| - 1.1e-09 37.5 2.5 1.3e-09 37.3 0.4 2.3 2 0 0 2 2 2 1 Plug domain of Sec61p Thiolase_C PF02803.13 gi|284165516|ref|YP_003403795.1| - 4e-07 29.4 0.2 1.1e-06 28.1 0.1 1.7 2 0 0 2 2 2 1 Thiolase, C-terminal domain Thiolase_N PF00108.18 gi|284165516|ref|YP_003403795.1| - 0.002 17.1 0.0 0.012 14.6 0.0 2.1 2 0 0 2 2 2 1 Thiolase, N-terminal domain DUF35 PF01796.12 gi|284165517|ref|YP_003403796.1| - 1.6e-05 25.0 3.5 3.1e-05 24.1 2.4 1.6 1 1 0 1 1 1 1 DUF35 OB-fold domain COX4_pro PF03626.9 gi|284165518|ref|YP_003403797.1| - 5.5e-12 45.5 10.4 6.2e-12 45.4 7.2 1.0 1 0 0 1 1 1 1 Prokaryotic Cytochrome C oxidase subunit IV MARVEL PF01284.18 gi|284165518|ref|YP_003403797.1| - 0.0058 16.4 0.5 0.0058 16.4 0.4 1.7 1 1 1 2 2 2 1 Membrane-associating domain Phage_holin_1 PF04531.8 gi|284165518|ref|YP_003403797.1| - 0.045 13.8 1.1 0.05 13.6 0.4 1.4 1 1 0 1 1 1 0 Bacteriophage holin DUF1516 PF07457.6 gi|284165518|ref|YP_003403797.1| - 0.052 13.6 3.9 0.062 13.3 2.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1516) 7TMR-DISM_7TM PF07695.6 gi|284165518|ref|YP_003403797.1| - 0.14 11.8 8.7 0.16 11.6 6.1 1.0 1 0 0 1 1 1 0 7TM diverse intracellular signalling Lig_chan PF00060.21 gi|284165518|ref|YP_003403797.1| - 0.19 11.4 2.1 0.32 10.7 1.5 1.5 1 1 0 1 1 1 0 Ligand-gated ion channel DUF4293 PF14126.1 gi|284165518|ref|YP_003403797.1| - 0.24 11.3 4.7 0.32 10.8 3.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4293) DUF4051 PF13260.1 gi|284165518|ref|YP_003403797.1| - 0.6 9.4 2.2 1.9 7.8 0.0 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF4051) zf-Di19 PF05605.7 gi|284165520|ref|YP_003403799.1| - 0.003 17.6 0.2 0.0052 16.8 0.2 1.4 1 0 0 1 1 1 1 Drought induced 19 protein (Di19), zinc-binding zf-C2H2 PF00096.21 gi|284165520|ref|YP_003403799.1| - 0.0068 16.6 0.1 0.012 15.8 0.1 1.5 1 0 0 1 1 1 1 Zinc finger, C2H2 type zf-CHCC PF10276.4 gi|284165520|ref|YP_003403799.1| - 0.0084 15.9 0.1 0.015 15.0 0.1 1.4 1 0 0 1 1 1 1 Zinc-finger domain zinc_ribbon_2 PF13240.1 gi|284165520|ref|YP_003403799.1| - 0.015 14.8 0.4 0.025 14.0 0.3 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|284165520|ref|YP_003403799.1| - 0.017 15.0 0.1 0.032 14.2 0.1 1.4 1 0 0 1 1 1 0 Zinc ribbon domain Sgf11 PF08209.6 gi|284165520|ref|YP_003403799.1| - 0.04 13.2 0.1 0.053 12.8 0.0 1.2 1 0 0 1 1 1 0 Sgf11 (transcriptional regulation protein) HNH PF01844.18 gi|284165520|ref|YP_003403799.1| - 0.05 13.4 0.0 0.075 12.9 0.0 1.3 1 0 0 1 1 1 0 HNH endonuclease zf-RING_3 PF14369.1 gi|284165520|ref|YP_003403799.1| - 0.053 13.5 0.3 0.1 12.6 0.2 1.4 1 0 0 1 1 1 0 zinc-finger zf-ribbon_3 PF13248.1 gi|284165520|ref|YP_003403799.1| - 0.066 12.4 0.1 0.11 11.7 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbon domain DUF2256 PF10013.4 gi|284165520|ref|YP_003403799.1| - 0.072 12.8 0.1 0.1 12.3 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2256) PyrI_C PF02748.10 gi|284165520|ref|YP_003403799.1| - 0.1 12.0 0.2 0.18 11.2 0.1 1.3 1 0 0 1 1 1 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain zf-C2H2_4 PF13894.1 gi|284165520|ref|YP_003403799.1| - 0.11 12.9 0.4 0.19 12.1 0.3 1.5 1 0 0 1 1 1 0 C2H2-type zinc finger CpXC PF14353.1 gi|284165520|ref|YP_003403799.1| - 0.11 12.4 0.4 0.15 11.9 0.3 1.4 1 1 0 1 1 1 0 CpXC protein zf-C2HC_2 PF13913.1 gi|284165520|ref|YP_003403799.1| - 0.12 12.1 0.5 0.17 11.5 0.4 1.3 1 0 0 1 1 1 0 zinc-finger of a C2HC-type Peptidase_S8 PF00082.17 gi|284165521|ref|YP_003403800.1| - 3.3e-52 177.4 4.2 4.3e-52 177.0 2.9 1.1 1 0 0 1 1 1 1 Subtilase family COX1 PF00115.15 gi|284165522|ref|YP_003403801.1| - 1.4e-135 452.4 69.6 1.4e-135 452.4 48.2 2.7 3 1 1 4 4 4 1 Cytochrome C and Quinol oxidase polypeptide I COX3 PF00510.13 gi|284165522|ref|YP_003403801.1| - 1.7e-22 80.0 20.2 1.7e-22 80.0 14.0 3.3 3 1 1 4 4 4 1 Cytochrome c oxidase subunit III DUF2583 PF10762.4 gi|284165522|ref|YP_003403801.1| - 3.7 7.7 12.2 8.8 6.5 3.3 4.6 3 2 0 3 3 3 0 Protein of unknown function (DUF2583) COX2 PF00116.15 gi|284165523|ref|YP_003403802.1| - 1.5e-18 66.7 0.1 1e-17 64.0 0.0 2.2 1 1 1 2 2 2 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.1 gi|284165523|ref|YP_003403802.1| - 0.0002 21.1 0.0 0.0041 17.0 0.0 2.6 2 2 1 3 3 3 1 Cupredoxin-like domain Big_3_4 PF13754.1 gi|284165523|ref|YP_003403802.1| - 0.08 13.2 1.4 0.19 12.0 0.2 2.3 3 0 0 3 3 3 0 Bacterial Ig-like domain (group 3) CcmD PF04995.9 gi|284165523|ref|YP_003403802.1| - 1.4 8.7 5.0 0.92 9.2 1.2 2.0 2 0 0 2 2 2 0 Heme exporter protein D (CcmD) ADK PF00406.17 gi|284165526|ref|YP_003403805.1| - 3.6e-43 147.0 0.0 4.4e-43 146.7 0.0 1.1 1 0 0 1 1 1 1 Adenylate kinase ADK_lid PF05191.9 gi|284165526|ref|YP_003403805.1| - 7.3e-18 63.9 2.5 1.3e-17 63.1 1.7 1.4 1 0 0 1 1 1 1 Adenylate kinase, active site lid AAA_17 PF13207.1 gi|284165526|ref|YP_003403805.1| - 1.7e-07 32.0 0.8 3.4e-07 31.1 0.5 1.7 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|284165526|ref|YP_003403805.1| - 3.6e-06 27.2 0.3 9.5e-06 25.9 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|284165526|ref|YP_003403805.1| - 4.8e-05 23.2 0.0 0.00015 21.6 0.0 1.9 1 1 1 2 2 2 1 AAA domain TF_Zn_Ribbon PF08271.7 gi|284165526|ref|YP_003403805.1| - 0.0023 17.2 5.1 0.006 15.8 3.5 1.7 1 0 0 1 1 1 1 TFIIB zinc-binding DZR PF12773.2 gi|284165526|ref|YP_003403805.1| - 0.0036 17.0 0.5 0.0066 16.2 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon Zeta_toxin PF06414.7 gi|284165526|ref|YP_003403805.1| - 0.013 14.6 0.0 0.027 13.5 0.0 1.5 1 1 0 1 1 1 0 Zeta toxin zf-IS66 PF13005.2 gi|284165526|ref|YP_003403805.1| - 0.017 15.1 5.7 0.068 13.1 1.5 2.6 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Prok-RING_1 PF14446.1 gi|284165526|ref|YP_003403805.1| - 0.036 13.7 4.4 0.9 9.3 0.3 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 HypA PF01155.14 gi|284165526|ref|YP_003403805.1| - 0.04 13.5 0.5 0.072 12.7 0.4 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family OrfB_Zn_ribbon PF07282.6 gi|284165526|ref|YP_003403805.1| - 0.047 13.3 0.9 0.082 12.5 0.6 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain NinF PF05810.7 gi|284165526|ref|YP_003403805.1| - 0.058 13.1 0.5 0.13 12.1 0.3 1.6 1 0 0 1 1 1 0 NinF protein RuvB_N PF05496.7 gi|284165526|ref|YP_003403805.1| - 0.065 12.2 0.0 0.12 11.4 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus DUF3039 PF11238.3 gi|284165526|ref|YP_003403805.1| - 0.069 12.6 0.1 0.14 11.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3039) Zn-ribbon_8 PF09723.5 gi|284165526|ref|YP_003403805.1| - 0.082 12.8 1.4 0.18 11.8 1.0 1.6 1 0 0 1 1 1 0 Zinc ribbon domain Nudix_N_2 PF14803.1 gi|284165526|ref|YP_003403805.1| - 0.085 12.5 3.0 4.2 7.1 0.1 2.4 2 0 0 2 2 2 0 Nudix N-terminal zf-C4_Topoisom PF01396.14 gi|284165526|ref|YP_003403805.1| - 0.11 12.0 0.4 0.53 9.8 0.0 2.0 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger A2L_zn_ribbon PF08792.5 gi|284165526|ref|YP_003403805.1| - 0.14 11.6 2.7 5.7 6.5 0.2 2.4 2 0 0 2 2 2 0 A2L zinc ribbon domain GFA PF04828.9 gi|284165526|ref|YP_003403805.1| - 0.18 11.7 0.5 15 5.6 0.0 2.3 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme DUF1451 PF07295.6 gi|284165526|ref|YP_003403805.1| - 0.2 11.4 2.1 0.38 10.5 1.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1451) zf-C2H2_3 PF13878.1 gi|284165526|ref|YP_003403805.1| - 1.1 8.8 3.8 0.49 10.0 0.1 2.1 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO DUF106 PF01956.11 gi|284165528|ref|YP_003403807.1| - 8.4e-37 126.2 0.2 1.2e-36 125.8 0.2 1.2 1 0 0 1 1 1 1 Integral membrane protein DUF106 OmpH PF03938.9 gi|284165528|ref|YP_003403807.1| - 0.0021 18.0 1.5 0.0032 17.4 1.1 1.3 1 0 0 1 1 1 1 Outer membrane protein (OmpH-like) 60KD_IMP PF02096.15 gi|284165528|ref|YP_003403807.1| - 0.015 15.0 5.7 0.11 12.1 3.9 2.1 1 1 0 1 1 1 0 60Kd inner membrane protein IncA PF04156.9 gi|284165528|ref|YP_003403807.1| - 0.019 14.5 0.5 0.046 13.3 0.3 1.7 1 0 0 1 1 1 0 IncA protein DUF2419 PF10343.4 gi|284165528|ref|YP_003403807.1| - 0.081 12.1 0.3 0.12 11.5 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2419) DUF4175 PF13779.1 gi|284165528|ref|YP_003403807.1| - 0.42 8.2 11.8 0.65 7.6 8.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4175) Mnd1 PF03962.10 gi|284165528|ref|YP_003403807.1| - 0.48 10.0 7.3 0.8 9.3 5.1 1.3 1 0 0 1 1 1 0 Mnd1 family DUF4199 PF13858.1 gi|284165528|ref|YP_003403807.1| - 0.77 9.6 5.0 1.2 8.9 1.5 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF4199) PEARLI-4 PF05278.7 gi|284165528|ref|YP_003403807.1| - 2.4 7.4 8.0 3.4 6.9 5.6 1.1 1 0 0 1 1 1 0 Arabidopsis phospholipase-like protein (PEARLI 4) APG6 PF04111.7 gi|284165528|ref|YP_003403807.1| - 3 6.8 7.4 5.7 5.8 5.1 1.4 1 0 0 1 1 1 0 Autophagy protein Apg6 Cytidylate_kin2 PF13189.1 gi|284165529|ref|YP_003403808.1| - 1.5e-19 70.5 0.0 2e-18 66.9 0.0 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|284165529|ref|YP_003403808.1| - 3.5e-17 62.9 0.0 4.6e-17 62.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|284165529|ref|YP_003403808.1| - 1.8e-14 54.6 1.1 2.9e-14 53.9 0.6 1.5 1 1 1 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|284165529|ref|YP_003403808.1| - 2.6e-08 33.8 0.3 4.5e-07 29.8 0.2 2.1 1 1 0 1 1 1 1 AAA domain ADK PF00406.17 gi|284165529|ref|YP_003403808.1| - 3.7e-08 33.3 0.0 7.1e-08 32.4 0.0 1.5 1 1 0 1 1 1 1 Adenylate kinase SKI PF01202.17 gi|284165529|ref|YP_003403808.1| - 0.00013 21.8 0.4 0.00056 19.7 0.3 1.9 1 1 0 1 1 1 1 Shikimate kinase Thymidylate_kin PF02223.12 gi|284165529|ref|YP_003403808.1| - 0.00028 20.3 0.1 0.49 9.7 0.0 2.2 1 1 0 2 2 2 2 Thymidylate kinase AAA_28 PF13521.1 gi|284165529|ref|YP_003403808.1| - 0.00079 19.4 0.1 0.0025 17.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|284165529|ref|YP_003403808.1| - 0.0019 18.3 0.0 0.0028 17.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|284165529|ref|YP_003403808.1| - 0.0025 18.0 0.0 0.0038 17.4 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|284165529|ref|YP_003403808.1| - 0.0029 17.3 0.0 0.0071 16.0 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain Zeta_toxin PF06414.7 gi|284165529|ref|YP_003403808.1| - 0.0033 16.5 0.2 0.019 14.0 0.0 2.0 2 0 0 2 2 2 1 Zeta toxin AAA_16 PF13191.1 gi|284165529|ref|YP_003403808.1| - 0.0061 16.5 0.2 0.014 15.3 0.2 1.8 1 1 0 1 1 1 1 AAA ATPase domain KTI12 PF08433.5 gi|284165529|ref|YP_003403808.1| - 0.0065 15.7 0.0 0.0089 15.2 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 RNA_helicase PF00910.17 gi|284165529|ref|YP_003403808.1| - 0.054 13.6 0.0 0.086 13.0 0.0 1.3 1 0 0 1 1 1 0 RNA helicase AAA_10 PF12846.2 gi|284165529|ref|YP_003403808.1| - 0.063 12.7 0.0 0.11 11.8 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_5 PF07728.9 gi|284165529|ref|YP_003403808.1| - 0.066 12.9 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Cytidylate_kin PF02224.13 gi|284165529|ref|YP_003403808.1| - 0.083 12.3 0.2 0.12 11.7 0.1 1.3 1 0 0 1 1 1 0 Cytidylate kinase ABC_tran PF00005.22 gi|284165529|ref|YP_003403808.1| - 0.16 12.2 0.0 0.23 11.7 0.0 1.4 1 1 0 1 1 1 0 ABC transporter T2SE PF00437.15 gi|284165529|ref|YP_003403808.1| - 0.16 10.8 0.0 1.4 7.7 0.0 2.0 2 0 0 2 2 2 0 Type II/IV secretion system protein TruB_N PF01509.13 gi|284165530|ref|YP_003403809.1| - 7.9e-23 81.2 0.4 2.7e-13 50.3 0.0 3.2 1 1 1 2 2 2 2 TruB family pseudouridylate synthase (N terminal domain) DKCLD PF08068.7 gi|284165530|ref|YP_003403809.1| - 2e-09 37.2 0.1 3.7e-09 36.3 0.0 1.4 1 0 0 1 1 1 1 DKCLD (NUC011) domain PUA PF01472.15 gi|284165530|ref|YP_003403809.1| - 1.5e-08 34.2 0.3 2.6e-08 33.4 0.2 1.4 1 0 0 1 1 1 1 PUA domain YHS PF04945.8 gi|284165531|ref|YP_003403810.1| - 9.3e-09 35.0 2.0 1.3e-08 34.5 1.4 1.2 1 1 0 1 1 1 1 YHS domain zf-FCS PF06467.9 gi|284165531|ref|YP_003403810.1| - 2.4e-05 23.8 0.3 2.7e-05 23.7 0.2 1.1 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif Rad50_zn_hook PF04423.9 gi|284165531|ref|YP_003403810.1| - 0.0021 17.4 0.1 0.0031 16.9 0.1 1.3 1 0 0 1 1 1 1 Rad50 zinc hook motif DUF581 PF04570.9 gi|284165531|ref|YP_003403810.1| - 0.0022 17.2 0.4 0.0027 16.9 0.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF581) DNA_ligase_ZBD PF03119.11 gi|284165531|ref|YP_003403810.1| - 0.0067 16.0 0.7 0.0079 15.8 0.1 1.5 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain zf-ribbon_3 PF13248.1 gi|284165531|ref|YP_003403810.1| - 0.011 14.8 0.2 0.019 14.1 0.1 1.5 1 1 0 1 1 1 0 zinc-ribbon domain zf-dskA_traR PF01258.12 gi|284165531|ref|YP_003403810.1| - 0.043 13.5 1.1 0.043 13.5 0.8 1.6 1 1 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger zf-RING_2 PF13639.1 gi|284165531|ref|YP_003403810.1| - 0.047 13.5 0.2 0.052 13.3 0.1 1.2 1 0 0 1 1 1 0 Ring finger domain zinc_ribbon_2 PF13240.1 gi|284165531|ref|YP_003403810.1| - 0.23 10.9 1.7 0.66 9.5 0.4 2.0 2 0 0 2 2 2 0 zinc-ribbon domain zf-IS66 PF13005.2 gi|284165534|ref|YP_003403813.1| - 0.0079 16.1 0.5 2.8 7.9 0.1 2.2 2 0 0 2 2 2 2 zinc-finger binding domain of transposase IS66 Nudix_N_2 PF14803.1 gi|284165534|ref|YP_003403813.1| - 0.18 11.5 0.1 0.18 11.5 0.1 1.8 2 0 0 2 2 2 0 Nudix N-terminal HTH_20 PF12840.2 gi|284165536|ref|YP_003403815.1| - 0.17 11.6 1.1 0.48 10.2 0.8 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain Hexapep PF00132.19 gi|284165538|ref|YP_003403817.1| - 2.6e-10 39.3 0.7 2.6e-10 39.3 0.5 2.7 3 0 0 3 3 3 1 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|284165538|ref|YP_003403817.1| - 7e-08 31.8 0.9 7e-08 31.8 0.6 2.3 3 0 0 3 3 3 1 Hexapeptide repeat of succinyl-transferase Pyr_redox_2 PF07992.9 gi|284165539|ref|YP_003403818.1| - 3e-17 63.1 0.0 5e-17 62.4 0.0 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|284165539|ref|YP_003403818.1| - 3.8e-10 40.0 0.8 1.2e-08 35.2 0.0 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|284165539|ref|YP_003403818.1| - 2.4e-07 31.0 0.8 0.021 14.8 0.0 3.2 2 1 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|284165539|ref|YP_003403818.1| - 0.0018 18.0 2.2 0.8 9.4 0.0 3.1 3 0 0 3 3 3 2 FAD-NAD(P)-binding AlaDh_PNT_C PF01262.16 gi|284165539|ref|YP_003403818.1| - 0.087 12.3 2.4 7.7 6.0 0.2 2.4 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Spore_SspJ PF09575.5 gi|284165539|ref|YP_003403818.1| - 1.8 8.8 5.4 0.51 10.5 0.1 2.6 3 0 0 3 3 3 0 Small spore protein J (Spore_SspJ) Arginase PF00491.16 gi|284165540|ref|YP_003403819.1| - 9.6e-78 261.2 3.3 1.1e-77 261.0 2.3 1.0 1 0 0 1 1 1 1 Arginase family Fe_dep_repr_C PF02742.10 gi|284165541|ref|YP_003403820.1| - 7.8e-28 95.9 1.9 1.1e-27 95.4 0.6 1.9 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.14 gi|284165541|ref|YP_003403820.1| - 1.8e-20 72.6 0.6 3.1e-20 71.8 0.4 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain FeoA PF04023.9 gi|284165541|ref|YP_003403820.1| - 2.8e-11 43.1 0.3 7e-11 41.9 0.0 1.8 2 0 0 2 2 1 1 FeoA domain MarR PF01047.17 gi|284165541|ref|YP_003403820.1| - 8.6e-09 34.9 0.0 1.6e-08 34.1 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|284165541|ref|YP_003403820.1| - 3.4e-08 33.0 0.1 2.3e-07 30.4 0.0 2.3 3 0 0 3 3 2 1 MarR family HTH_27 PF13463.1 gi|284165541|ref|YP_003403820.1| - 1.2e-07 31.9 2.2 2.4e-07 30.9 0.3 2.3 3 0 0 3 3 3 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|284165541|ref|YP_003403820.1| - 2.4e-06 26.8 0.0 5.9e-06 25.5 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding DUF2250 PF10007.4 gi|284165541|ref|YP_003403820.1| - 1.8e-05 24.5 0.2 3.6e-05 23.5 0.1 1.6 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_IclR PF09339.5 gi|284165541|ref|YP_003403820.1| - 2.8e-05 23.6 0.0 0.00051 19.5 0.0 2.5 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|284165541|ref|YP_003403820.1| - 5.6e-05 22.7 0.0 0.00016 21.3 0.0 1.7 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.16 gi|284165541|ref|YP_003403820.1| - 0.00015 21.0 0.0 0.00037 19.8 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.1 gi|284165541|ref|YP_003403820.1| - 0.00019 21.1 0.0 0.00041 20.0 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Rrf2 PF02082.15 gi|284165541|ref|YP_003403820.1| - 0.0003 20.8 0.1 0.00072 19.6 0.0 1.7 2 0 0 2 2 1 1 Transcriptional regulator HrcA_DNA-bdg PF03444.10 gi|284165541|ref|YP_003403820.1| - 0.00035 19.9 0.0 0.00058 19.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_20 PF12840.2 gi|284165541|ref|YP_003403820.1| - 0.00046 19.9 0.0 0.0015 18.3 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_12 PF08461.5 gi|284165541|ref|YP_003403820.1| - 0.00098 18.7 0.1 0.0034 17.0 0.1 1.9 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_11 PF08279.7 gi|284165541|ref|YP_003403820.1| - 0.001 18.6 0.1 0.0017 17.9 0.1 1.4 1 0 0 1 1 1 1 HTH domain FeoC PF09012.5 gi|284165541|ref|YP_003403820.1| - 0.0021 17.7 0.0 0.0039 16.8 0.0 1.5 1 0 0 1 1 1 1 FeoC like transcriptional regulator Penicillinase_R PF03965.11 gi|284165541|ref|YP_003403820.1| - 0.0064 16.5 0.1 0.013 15.5 0.1 1.5 1 0 0 1 1 1 1 Penicillinase repressor Topoisom_bac PF01131.15 gi|284165541|ref|YP_003403820.1| - 0.0067 15.3 0.1 0.0085 14.9 0.1 1.2 1 0 0 1 1 1 1 DNA topoisomerase HTH_1 PF00126.22 gi|284165541|ref|YP_003403820.1| - 0.0075 15.9 0.0 0.021 14.5 0.0 1.8 1 1 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family DUF4423 PF14394.1 gi|284165541|ref|YP_003403820.1| - 0.011 15.3 0.1 0.017 14.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_5 PF01022.15 gi|284165541|ref|YP_003403820.1| - 0.017 14.7 0.0 0.042 13.5 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_23 PF13384.1 gi|284165541|ref|YP_003403820.1| - 0.023 14.3 0.0 0.051 13.2 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_45 PF14947.1 gi|284165541|ref|YP_003403820.1| - 0.023 14.5 0.1 0.037 13.8 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_13 PF11972.3 gi|284165541|ref|YP_003403820.1| - 0.033 14.0 0.0 0.069 13.0 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain CtsR PF05848.6 gi|284165541|ref|YP_003403820.1| - 0.075 12.9 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 Firmicute transcriptional repressor of class III stress genes (CtsR) HTH_CodY PF08222.6 gi|284165541|ref|YP_003403820.1| - 0.081 12.2 0.0 0.17 11.2 0.0 1.5 1 0 0 1 1 1 0 CodY helix-turn-helix domain HxlR PF01638.12 gi|284165541|ref|YP_003403820.1| - 0.086 12.4 0.1 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_29 PF13551.1 gi|284165541|ref|YP_003403820.1| - 0.11 12.6 0.0 0.75 9.9 0.0 2.1 1 1 1 2 2 2 0 Winged helix-turn helix Zip PF02535.17 gi|284165542|ref|YP_003403821.1| - 2.6e-08 33.2 5.8 2.6e-08 33.2 4.0 2.2 2 0 0 2 2 2 2 ZIP Zinc transporter HrcA_DNA-bdg PF03444.10 gi|284165543|ref|YP_003403822.1| - 4.4e-37 125.3 0.1 6.5e-37 124.8 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.15 gi|284165543|ref|YP_003403822.1| - 1.5e-08 34.6 0.0 2.5e-08 33.9 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.7 gi|284165543|ref|YP_003403822.1| - 3.5e-06 26.5 0.0 5.6e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.1 gi|284165543|ref|YP_003403822.1| - 0.015 14.6 0.2 0.028 13.8 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|284165543|ref|YP_003403822.1| - 0.018 14.7 0.0 0.034 13.8 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|284165543|ref|YP_003403822.1| - 0.019 14.7 0.0 0.039 13.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Put_DNA-bind_N PF06971.8 gi|284165543|ref|YP_003403822.1| - 0.032 13.9 0.0 0.054 13.2 0.0 1.4 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus Phage_terminase PF10668.4 gi|284165543|ref|YP_003403822.1| - 0.042 13.6 0.0 0.072 12.8 0.0 1.3 1 0 0 1 1 1 0 Phage terminase small subunit HTH_38 PF13936.1 gi|284165543|ref|YP_003403822.1| - 0.075 12.6 0.3 0.25 10.8 0.0 2.1 3 1 0 3 3 3 0 Helix-turn-helix domain DNA_topoisoIV PF00521.15 gi|284165544|ref|YP_003403823.1| - 9.6e-155 515.6 0.0 1.2e-154 515.3 0.0 1.1 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.8 gi|284165544|ref|YP_003403823.1| - 1e-64 213.5 12.5 7.1e-14 50.8 0.1 6.4 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller DUF3372 PF11852.3 gi|284165544|ref|YP_003403823.1| - 0.093 11.8 0.7 0.23 10.5 0.5 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3372) DNA_gyraseB PF00204.20 gi|284165545|ref|YP_003403824.1| - 9e-60 200.8 1.2 1.4e-59 200.1 0.5 1.6 2 0 0 2 2 2 1 DNA gyrase B DNA_gyraseB_C PF00986.16 gi|284165545|ref|YP_003403824.1| - 8e-30 102.4 0.0 1.7e-29 101.3 0.0 1.5 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus Toprim PF01751.17 gi|284165545|ref|YP_003403824.1| - 1.3e-24 86.0 0.1 4e-24 84.4 0.0 1.9 2 0 0 2 2 2 1 Toprim domain HATPase_c PF02518.21 gi|284165545|ref|YP_003403824.1| - 1.5e-19 69.7 0.1 3.3e-19 68.6 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|284165545|ref|YP_003403824.1| - 0.00011 21.8 0.1 0.00025 20.6 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Proteasome PF00227.21 gi|284165546|ref|YP_003403825.1| - 1.3e-44 151.8 0.0 1.5e-44 151.5 0.0 1.0 1 0 0 1 1 1 1 Proteasome subunit Proteasome PF00227.21 gi|284165547|ref|YP_003403826.1| - 7.6e-61 204.7 0.0 9.4e-61 204.4 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|284165547|ref|YP_003403826.1| - 2.4e-14 52.2 0.1 4.3e-14 51.4 0.1 1.4 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature ABC2_membrane_3 PF12698.2 gi|284165548|ref|YP_003403827.1| - 0.00033 19.7 14.4 0.00033 19.7 10.0 1.8 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|284165548|ref|YP_003403827.1| - 0.13 11.4 20.8 0.79 8.8 13.4 2.2 1 1 1 2 2 2 0 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|284165548|ref|YP_003403827.1| - 3.5 6.3 20.6 0.26 10.1 10.5 1.7 1 1 1 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.22 gi|284165549|ref|YP_003403828.1| - 8.9e-28 97.2 0.0 1.6e-27 96.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284165549|ref|YP_003403828.1| - 1.2e-11 45.1 0.1 6e-06 26.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|284165549|ref|YP_003403828.1| - 0.00018 20.9 0.2 0.00053 19.4 0.0 1.8 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|284165549|ref|YP_003403828.1| - 0.0003 20.8 0.3 0.00077 19.5 0.2 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.1 gi|284165549|ref|YP_003403828.1| - 0.0024 18.2 0.0 0.0034 17.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain SRP54 PF00448.17 gi|284165549|ref|YP_003403828.1| - 0.011 15.1 0.0 0.022 14.2 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Zeta_toxin PF06414.7 gi|284165549|ref|YP_003403828.1| - 0.015 14.3 0.0 0.076 12.0 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin AAA_25 PF13481.1 gi|284165549|ref|YP_003403828.1| - 0.023 14.1 7.8 58 3.0 5.4 3.1 1 1 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|284165549|ref|YP_003403828.1| - 0.029 13.9 0.0 0.069 12.7 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_33 PF13671.1 gi|284165549|ref|YP_003403828.1| - 0.034 14.0 0.1 0.096 12.5 0.0 1.8 2 1 0 2 2 2 0 AAA domain MobB PF03205.9 gi|284165549|ref|YP_003403828.1| - 0.043 13.5 0.3 0.53 9.9 0.0 2.5 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_15 PF13175.1 gi|284165549|ref|YP_003403828.1| - 0.058 12.4 0.0 3 6.8 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_19 PF13245.1 gi|284165549|ref|YP_003403828.1| - 0.064 13.0 0.6 0.21 11.3 0.0 2.2 2 0 0 2 2 2 0 Part of AAA domain Transcrip_reg PF01709.15 gi|284165549|ref|YP_003403828.1| - 0.086 11.9 0.1 0.13 11.3 0.1 1.2 1 0 0 1 1 1 0 Transcriptional regulator AAA PF00004.24 gi|284165549|ref|YP_003403828.1| - 0.09 12.9 0.0 0.3 11.3 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.14 gi|284165549|ref|YP_003403828.1| - 0.096 11.9 0.1 1.3 8.2 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain MukB PF04310.7 gi|284165549|ref|YP_003403828.1| - 0.14 11.4 0.1 0.7 9.1 0.0 2.0 2 0 0 2 2 2 0 MukB N-terminal AAA_22 PF13401.1 gi|284165549|ref|YP_003403828.1| - 0.15 12.1 1.3 0.97 9.5 0.3 2.5 1 1 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|284165549|ref|YP_003403828.1| - 0.22 12.3 2.6 1 10.2 1.8 2.3 1 1 0 1 1 1 0 AAA domain Nramp PF01566.13 gi|284165550|ref|YP_003403829.1| - 8.1e-35 120.2 27.0 1.2e-34 119.6 18.7 1.2 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein DUF4212 PF13937.1 gi|284165550|ref|YP_003403829.1| - 0.25 11.3 0.1 0.25 11.3 0.1 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4212) COX14 PF14880.1 gi|284165550|ref|YP_003403829.1| - 4.8 6.8 0.0 4.8 6.8 0.0 4.0 4 0 0 4 4 4 0 Cytochrome oxidase c assembly TauE PF01925.14 gi|284165551|ref|YP_003403830.1| - 8.2e-29 100.7 40.7 1e-28 100.4 28.2 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF3224 PF11528.3 gi|284165551|ref|YP_003403830.1| - 0.16 11.4 0.4 0.3 10.6 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3224) Usp PF00582.21 gi|284165552|ref|YP_003403831.1| - 1.4e-33 116.0 1.4 1.6e-33 115.8 1.0 1.1 1 0 0 1 1 1 1 Universal stress protein family VWA_3 PF13768.1 gi|284165552|ref|YP_003403831.1| - 0.11 12.2 0.0 0.17 11.5 0.0 1.5 1 1 0 1 1 1 0 von Willebrand factor type A domain Lipase_GDSL_2 PF13472.1 gi|284165553|ref|YP_003403832.1| - 0.029 14.5 0.0 0.088 12.9 0.0 1.8 2 0 0 2 2 2 0 GDSL-like Lipase/Acylhydrolase family PAS_9 PF13426.1 gi|284165554|ref|YP_003403833.1| - 8.4e-48 161.0 1.3 4.9e-18 65.4 0.0 4.6 4 0 0 4 4 4 4 PAS domain PAS_4 PF08448.5 gi|284165554|ref|YP_003403833.1| - 2e-44 150.1 14.4 3.3e-12 46.3 0.1 4.6 4 0 0 4 4 4 4 PAS fold HATPase_c PF02518.21 gi|284165554|ref|YP_003403833.1| - 1.3e-30 105.3 0.0 3.9e-30 103.8 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|284165554|ref|YP_003403833.1| - 1.4e-25 89.2 2.8 4.8e-11 42.4 0.0 4.7 4 1 0 4 4 4 3 PAS fold PAS_8 PF13188.1 gi|284165554|ref|YP_003403833.1| - 1.8e-13 49.7 0.2 0.037 13.8 0.0 4.9 4 0 0 4 4 4 4 PAS domain PAS_7 PF12860.2 gi|284165554|ref|YP_003403833.1| - 1.2e-12 47.8 2.2 0.025 14.5 0.1 5.3 4 2 0 4 4 4 4 PAS fold HisKA PF00512.20 gi|284165554|ref|YP_003403833.1| - 1e-10 41.4 1.9 3.1e-10 39.9 0.1 2.9 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_10 PF13596.1 gi|284165554|ref|YP_003403833.1| - 2.3e-05 24.5 0.1 0.57 10.4 0.0 3.7 3 0 0 3 3 3 2 PAS domain HATPase_c_5 PF14501.1 gi|284165554|ref|YP_003403833.1| - 7.6e-05 22.3 0.0 0.00015 21.3 0.0 1.4 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.1 gi|284165554|ref|YP_003403833.1| - 0.00043 19.9 0.0 0.0042 16.7 0.0 2.4 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|284165554|ref|YP_003403833.1| - 0.00046 20.2 4.4 0.13 12.3 0.1 4.8 5 1 0 5 5 4 1 PAS fold HATPase_c_2 PF13581.1 gi|284165554|ref|YP_003403833.1| - 0.0079 15.9 0.1 0.033 13.9 0.0 2.1 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain A2M_N PF01835.14 gi|284165554|ref|YP_003403833.1| - 0.056 13.6 0.1 2.1 8.6 0.0 2.9 3 1 0 3 3 2 0 MG2 domain Ion_trans_2 PF07885.11 gi|284165555|ref|YP_003403834.1| - 0.44 10.2 17.6 0.031 13.9 7.7 2.2 2 1 0 2 2 2 0 Ion channel HTH_24 PF13412.1 gi|284165557|ref|YP_003403836.1| - 8.5e-14 50.6 0.4 1.5e-13 49.9 0.3 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|284165557|ref|YP_003403836.1| - 2.8e-11 42.7 0.4 5.9e-11 41.7 0.3 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|284165557|ref|YP_003403836.1| - 9.2e-10 38.0 0.2 2.7e-09 36.5 0.2 1.8 2 0 0 2 2 1 1 HTH domain HTH_DeoR PF08220.7 gi|284165557|ref|YP_003403836.1| - 3.5e-06 26.4 0.4 7.7e-06 25.3 0.1 1.7 2 0 0 2 2 1 1 DeoR-like helix-turn-helix domain HTH_IclR PF09339.5 gi|284165557|ref|YP_003403836.1| - 1.4e-05 24.6 0.1 2.8e-05 23.6 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.14 gi|284165557|ref|YP_003403836.1| - 3.5e-05 23.6 0.0 7.2e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.17 gi|284165557|ref|YP_003403836.1| - 6.6e-05 22.5 0.1 0.00035 20.2 0.0 2.1 3 0 0 3 3 3 1 MarR family HTH_23 PF13384.1 gi|284165557|ref|YP_003403836.1| - 9.1e-05 21.9 0.1 0.0002 20.9 0.1 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_20 PF12840.2 gi|284165557|ref|YP_003403836.1| - 0.0001 21.9 0.0 0.00017 21.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|284165557|ref|YP_003403836.1| - 0.00011 21.8 0.0 0.00023 20.8 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_10 PF04967.7 gi|284165557|ref|YP_003403836.1| - 0.00012 21.5 0.1 0.00026 20.5 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain GntR PF00392.16 gi|284165557|ref|YP_003403836.1| - 0.00013 21.3 0.1 0.00029 20.1 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Rrf2 PF02082.15 gi|284165557|ref|YP_003403836.1| - 0.00015 21.8 0.1 0.00036 20.5 0.0 1.7 2 0 0 2 2 1 1 Transcriptional regulator MarR_2 PF12802.2 gi|284165557|ref|YP_003403836.1| - 0.00016 21.3 0.2 0.00032 20.3 0.1 1.6 1 1 0 1 1 1 1 MarR family Put_DNA-bind_N PF06971.8 gi|284165557|ref|YP_003403836.1| - 0.00023 20.8 0.2 0.0026 17.4 0.0 2.3 2 0 0 2 2 2 1 Putative DNA-binding protein N-terminus FaeA PF04703.7 gi|284165557|ref|YP_003403836.1| - 0.00091 19.3 0.1 0.0019 18.3 0.1 1.5 1 0 0 1 1 1 1 FaeA-like protein EAP30 PF04157.11 gi|284165557|ref|YP_003403836.1| - 0.0011 18.2 0.2 0.0064 15.6 0.1 1.9 2 0 0 2 2 2 1 EAP30/Vps36 family HTH_Mga PF08280.6 gi|284165557|ref|YP_003403836.1| - 0.0011 18.6 0.0 0.002 17.8 0.0 1.4 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain TrmB PF01978.14 gi|284165557|ref|YP_003403836.1| - 0.0019 17.8 0.1 0.0051 16.4 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HrcA_DNA-bdg PF03444.10 gi|284165557|ref|YP_003403836.1| - 0.002 17.5 0.0 0.0035 16.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding RPA_C PF08784.6 gi|284165557|ref|YP_003403836.1| - 0.002 18.4 0.4 0.011 16.1 0.1 2.0 2 0 0 2 2 2 1 Replication protein A C terminal Sigma70_r4_2 PF08281.7 gi|284165557|ref|YP_003403836.1| - 0.0021 17.5 0.1 0.0055 16.1 0.1 1.7 2 0 0 2 2 1 1 Sigma-70, region 4 HTH_CodY PF08222.6 gi|284165557|ref|YP_003403836.1| - 0.0028 16.9 0.8 0.0069 15.7 0.1 1.8 2 0 0 2 2 2 1 CodY helix-turn-helix domain DDRGK PF09756.4 gi|284165557|ref|YP_003403836.1| - 0.0048 16.3 0.1 0.014 14.7 0.0 1.7 2 0 0 2 2 2 1 DDRGK domain HTH_28 PF13518.1 gi|284165557|ref|YP_003403836.1| - 0.0055 16.6 0.1 0.0097 15.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4423 PF14394.1 gi|284165557|ref|YP_003403836.1| - 0.0078 15.7 0.0 0.042 13.3 0.0 2.1 2 1 1 3 3 3 1 Domain of unknown function (DUF4423) Sigma70_r4 PF04545.11 gi|284165557|ref|YP_003403836.1| - 0.011 15.0 0.1 0.021 14.1 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_29 PF13551.1 gi|284165557|ref|YP_003403836.1| - 0.016 15.3 0.0 0.026 14.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix HTH_17 PF12728.2 gi|284165557|ref|YP_003403836.1| - 0.028 14.6 0.0 0.048 13.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|284165557|ref|YP_003403836.1| - 0.028 13.9 0.1 0.064 12.8 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_26 PF13443.1 gi|284165557|ref|YP_003403836.1| - 0.036 14.2 0.1 0.081 13.1 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_5 PF01022.15 gi|284165557|ref|YP_003403836.1| - 0.036 13.7 0.0 0.066 12.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_30 PF13556.1 gi|284165557|ref|YP_003403836.1| - 0.039 13.5 0.1 0.09 12.3 0.0 1.6 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain LacI PF00356.16 gi|284165557|ref|YP_003403836.1| - 0.044 13.4 0.9 1 9.0 0.0 2.6 3 0 0 3 3 2 0 Bacterial regulatory proteins, lacI family HTH_41 PF14502.1 gi|284165557|ref|YP_003403836.1| - 0.045 13.3 0.1 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain RepL PF05732.6 gi|284165557|ref|YP_003403836.1| - 0.046 12.9 0.0 0.083 12.0 0.0 1.4 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) GerE PF00196.14 gi|284165557|ref|YP_003403836.1| - 0.07 12.4 0.1 0.47 9.7 0.0 2.3 2 1 1 3 3 2 0 Bacterial regulatory proteins, luxR family HTH_36 PF13730.1 gi|284165557|ref|YP_003403836.1| - 0.071 13.2 0.0 0.35 11.0 0.0 2.1 2 1 0 2 2 2 0 Helix-turn-helix domain MerR PF00376.18 gi|284165557|ref|YP_003403836.1| - 0.081 12.5 0.3 0.21 11.1 0.0 1.9 2 1 0 2 2 1 0 MerR family regulatory protein HTH_34 PF13601.1 gi|284165557|ref|YP_003403836.1| - 0.082 12.9 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_31 PF13560.1 gi|284165557|ref|YP_003403836.1| - 0.093 12.9 1.4 0.23 11.6 0.1 2.1 2 1 0 2 2 2 0 Helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|284165557|ref|YP_003403836.1| - 0.1 12.1 0.0 0.2 11.2 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain HTH_3 PF01381.17 gi|284165557|ref|YP_003403836.1| - 0.12 12.2 0.5 1.6 8.6 0.1 2.3 2 0 0 2 2 2 0 Helix-turn-helix Topo-VIb_trans PF09239.6 gi|284165558|ref|YP_003403837.1| - 4.6e-67 224.5 0.0 9.5e-67 223.5 0.0 1.6 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|284165558|ref|YP_003403837.1| - 2.4e-17 62.6 0.3 1.6e-16 59.9 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|284165558|ref|YP_003403837.1| - 1.4e-14 53.9 0.1 5.8e-14 51.9 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|284165558|ref|YP_003403837.1| - 0.00042 20.0 0.1 0.0055 16.4 0.0 2.6 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain TP6A_N PF04406.9 gi|284165559|ref|YP_003403838.1| - 1.6e-20 72.5 0.1 2.9e-20 71.6 0.1 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase SNARE_assoc PF09335.6 gi|284165560|ref|YP_003403839.1| - 2.4e-13 50.3 6.5 2.4e-13 50.3 4.5 1.7 1 1 0 1 1 1 1 SNARE associated Golgi protein Exc PF07825.6 gi|284165561|ref|YP_003403840.1| - 0.11 12.3 0.0 0.22 11.2 0.0 1.6 1 1 0 1 1 1 0 Excisionase-like protein C1_3 PF07649.7 gi|284165561|ref|YP_003403840.1| - 1.7 8.7 4.4 12 5.9 0.0 2.4 3 0 0 3 3 3 0 C1-like domain Toxin_16 PF07945.6 gi|284165561|ref|YP_003403840.1| - 3.8 7.2 7.4 0.89 9.2 1.7 2.2 2 0 0 2 2 2 0 Janus-atracotoxin Lactamase_B_3 PF13483.1 gi|284165562|ref|YP_003403841.1| - 6.4e-35 120.2 0.0 8.7e-35 119.8 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain FAA_hydrolase PF01557.13 gi|284165563|ref|YP_003403842.1| - 7.5e-64 215.1 0.1 9.1e-64 214.8 0.1 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family GlutR_dimer PF00745.15 gi|284165564|ref|YP_003403843.1| - 0.12 12.2 1.0 0.13 12.1 0.7 1.0 1 0 0 1 1 1 0 Glutamyl-tRNAGlu reductase, dimerisation domain Bd3614_N PF14442.1 gi|284165564|ref|YP_003403843.1| - 1.8 8.5 4.6 1.8 8.5 3.2 1.0 1 0 0 1 1 1 0 Bd3614-like deaminase N-terminal Snf7 PF03357.16 gi|284165564|ref|YP_003403843.1| - 7.6 5.8 6.6 8.1 5.7 4.6 1.0 1 0 0 1 1 1 0 Snf7 DZR PF12773.2 gi|284165565|ref|YP_003403844.1| - 0.0018 18.0 0.2 0.0022 17.7 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|284165565|ref|YP_003403844.1| - 0.029 13.8 0.8 0.043 13.3 0.5 1.3 1 0 0 1 1 1 0 zinc-ribbon domain zf-C3HC4_3 PF13920.1 gi|284165565|ref|YP_003403844.1| - 0.11 12.2 1.5 0.69 9.6 0.1 2.1 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) PAS_9 PF13426.1 gi|284165566|ref|YP_003403845.1| - 6.2e-32 110.0 1.8 5.2e-12 46.0 0.0 3.6 3 0 0 3 3 3 3 PAS domain HATPase_c PF02518.21 gi|284165566|ref|YP_003403845.1| - 8.5e-30 102.7 0.0 3.4e-29 100.8 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|284165566|ref|YP_003403845.1| - 1.2e-29 102.5 11.0 9.3e-14 51.3 0.2 3.7 3 0 0 3 3 3 3 PAS fold PAS_3 PF08447.6 gi|284165566|ref|YP_003403845.1| - 7.4e-22 77.2 1.2 5.2e-16 58.5 0.0 4.7 5 0 0 5 5 5 2 PAS fold GAF PF01590.21 gi|284165566|ref|YP_003403845.1| - 3.9e-16 59.5 0.7 3.9e-16 59.5 0.5 2.6 4 0 0 4 4 4 1 GAF domain GAF_2 PF13185.1 gi|284165566|ref|YP_003403845.1| - 1.6e-13 51.3 3.3 2.5e-13 50.7 0.6 2.6 3 0 0 3 3 3 1 GAF domain PAS PF00989.19 gi|284165566|ref|YP_003403845.1| - 1.6e-11 43.9 0.4 0.0079 15.9 0.0 4.7 4 1 0 4 4 4 4 PAS fold GAF_3 PF13492.1 gi|284165566|ref|YP_003403845.1| - 8.8e-10 38.7 1.4 2e-09 37.6 0.2 2.2 2 0 0 2 2 2 1 GAF domain HisKA PF00512.20 gi|284165566|ref|YP_003403845.1| - 1.8e-09 37.4 0.0 1.8e-09 37.4 0.0 2.9 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.1 gi|284165566|ref|YP_003403845.1| - 2.2e-07 30.4 0.2 0.00049 19.8 0.0 3.7 3 0 0 3 3 3 1 PAS domain PAS_7 PF12860.2 gi|284165566|ref|YP_003403845.1| - 2.2e-06 27.6 3.5 0.048 13.6 0.1 4.6 4 1 0 4 4 4 2 PAS fold HATPase_c_5 PF14501.1 gi|284165566|ref|YP_003403845.1| - 0.00017 21.1 0.0 0.00042 19.9 0.0 1.6 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.1 gi|284165566|ref|YP_003403845.1| - 0.048 13.3 0.0 0.1 12.2 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.1 gi|284165566|ref|YP_003403845.1| - 0.12 12.6 0.3 27 5.1 0.0 3.5 4 0 0 4 4 4 0 PAS domain TOBE PF03459.12 gi|284165567|ref|YP_003403846.1| - 5.6e-15 55.1 5.9 1.4e-14 53.9 0.1 3.2 3 1 0 3 3 3 1 TOBE domain HTH_1 PF00126.22 gi|284165567|ref|YP_003403846.1| - 6.8e-07 28.9 0.0 1.5e-06 27.8 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family Vir_act_alpha_C PF10400.4 gi|284165567|ref|YP_003403846.1| - 0.046 14.0 0.0 0.11 12.9 0.0 1.6 1 0 0 1 1 1 0 Virulence activator alpha C-term ABC_tran PF00005.22 gi|284165568|ref|YP_003403847.1| - 1.2e-35 122.7 0.0 1.9e-35 122.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284165568|ref|YP_003403847.1| - 2.9e-12 47.1 0.0 6.7e-06 26.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|284165568|ref|YP_003403847.1| - 3.1e-06 27.3 0.7 7.5e-06 26.0 0.5 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|284165568|ref|YP_003403847.1| - 3.7e-06 27.7 0.5 9.4e-06 26.4 0.4 2.1 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|284165568|ref|YP_003403847.1| - 4e-05 23.7 0.0 0.00048 20.2 0.0 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|284165568|ref|YP_003403847.1| - 6.6e-05 22.2 0.0 0.011 14.9 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|284165568|ref|YP_003403847.1| - 7.5e-05 22.1 0.0 0.00016 21.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain MobB PF03205.9 gi|284165568|ref|YP_003403847.1| - 0.0001 22.0 0.1 0.015 14.9 0.0 2.4 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|284165568|ref|YP_003403847.1| - 0.00012 21.5 0.1 0.021 14.2 0.0 2.2 2 0 0 2 2 2 1 AAA-like domain DUF258 PF03193.11 gi|284165568|ref|YP_003403847.1| - 0.00021 20.5 0.0 0.00035 19.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|284165568|ref|YP_003403847.1| - 0.00026 20.4 0.1 0.0012 18.3 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|284165568|ref|YP_003403847.1| - 0.00048 20.4 0.0 0.0024 18.1 0.0 2.1 2 1 0 2 2 2 1 AAA domain SbcCD_C PF13558.1 gi|284165568|ref|YP_003403847.1| - 0.00052 19.8 0.2 0.008 16.0 0.1 2.5 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_14 PF13173.1 gi|284165568|ref|YP_003403847.1| - 0.0037 17.1 0.0 0.023 14.5 0.0 2.1 2 1 1 3 3 3 1 AAA domain MMR_HSR1 PF01926.18 gi|284165568|ref|YP_003403847.1| - 0.0061 16.5 0.0 0.0096 15.8 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_15 PF13175.1 gi|284165568|ref|YP_003403847.1| - 0.0062 15.6 0.0 2.8 6.9 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain AAA_19 PF13245.1 gi|284165568|ref|YP_003403847.1| - 0.0071 16.0 1.4 2.6 7.8 0.1 2.5 2 0 0 2 2 2 1 Part of AAA domain AAA_33 PF13671.1 gi|284165568|ref|YP_003403847.1| - 0.0088 15.9 0.1 0.058 13.2 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|284165568|ref|YP_003403847.1| - 0.01 15.8 0.1 0.038 13.9 0.1 2.0 1 1 0 1 1 1 1 AAA domain Vhr1 PF04001.8 gi|284165568|ref|YP_003403847.1| - 0.011 15.5 0.0 0.02 14.8 0.0 1.3 1 0 0 1 1 1 0 Transcription factor Vhr1 DUF2813 PF11398.3 gi|284165568|ref|YP_003403847.1| - 0.012 14.7 0.0 0.037 13.1 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2813) AAA_23 PF13476.1 gi|284165568|ref|YP_003403847.1| - 0.018 15.3 0.0 0.028 14.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|284165568|ref|YP_003403847.1| - 0.024 14.1 0.9 0.45 10.0 0.0 2.4 3 0 0 3 3 2 0 AAA domain NACHT PF05729.7 gi|284165568|ref|YP_003403847.1| - 0.036 13.7 0.0 0.06 13.0 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_5 PF07728.9 gi|284165568|ref|YP_003403847.1| - 0.078 12.6 0.0 0.25 11.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_24 PF13479.1 gi|284165568|ref|YP_003403847.1| - 0.12 11.8 0.3 0.17 11.4 0.2 1.5 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|284165568|ref|YP_003403847.1| - 0.13 12.5 0.0 1.2 9.3 0.0 2.3 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) BPD_transp_1 PF00528.17 gi|284165569|ref|YP_003403848.1| - 1.5e-11 44.1 11.6 1.5e-11 44.1 8.0 1.4 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component PBP_like_2 PF12849.2 gi|284165570|ref|YP_003403849.1| - 2.1e-24 86.4 1.1 2.5e-24 86.2 0.8 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|284165570|ref|YP_003403849.1| - 1e-07 31.8 0.0 2.3e-07 30.7 0.0 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.2 gi|284165570|ref|YP_003403849.1| - 0.021 13.7 0.1 0.059 12.3 0.0 1.6 1 1 0 1 1 1 0 PBP superfamily domain TAT_signal PF10518.4 gi|284165570|ref|YP_003403849.1| - 0.043 13.8 2.6 0.043 13.8 1.8 2.0 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence AsnC_trans_reg PF01037.16 gi|284165571|ref|YP_003403850.1| - 2.1e-12 46.5 0.0 3.9e-12 45.6 0.0 1.5 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|284165571|ref|YP_003403850.1| - 9.7e-10 37.6 0.2 2.9e-09 36.1 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|284165571|ref|YP_003403850.1| - 1.2e-06 28.0 0.4 3.8e-06 26.4 0.1 2.0 2 1 1 3 3 3 1 Bacterial regulatory protein, arsR family HTH_AsnC-type PF13404.1 gi|284165571|ref|YP_003403850.1| - 3.7e-06 26.3 0.1 5.5e-06 25.8 0.1 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.2 gi|284165571|ref|YP_003403850.1| - 7.3e-06 25.6 0.1 1.3e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|284165571|ref|YP_003403850.1| - 7.7e-06 25.4 0.1 2.5e-05 23.8 0.0 1.8 2 0 0 2 2 1 1 HTH domain HTH_DeoR PF08220.7 gi|284165571|ref|YP_003403850.1| - 0.00017 21.0 0.1 0.0011 18.5 0.1 2.0 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain GntR PF00392.16 gi|284165571|ref|YP_003403850.1| - 0.0002 20.7 0.2 0.00053 19.3 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_10 PF04967.7 gi|284165571|ref|YP_003403850.1| - 0.001 18.5 0.0 0.002 17.6 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain DUF2042 PF09743.4 gi|284165571|ref|YP_003403850.1| - 0.0022 17.3 0.0 0.0041 16.4 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2042) TrmB PF01978.14 gi|284165571|ref|YP_003403850.1| - 0.0032 17.1 0.1 0.0066 16.1 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.1 gi|284165571|ref|YP_003403850.1| - 0.0039 17.1 0.0 0.0076 16.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|284165571|ref|YP_003403850.1| - 0.0076 15.9 0.0 0.012 15.2 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|284165571|ref|YP_003403850.1| - 0.0096 15.4 0.1 0.02 14.4 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|284165571|ref|YP_003403850.1| - 0.018 14.8 0.0 0.028 14.1 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_7 PF02796.10 gi|284165571|ref|YP_003403850.1| - 0.02 14.7 0.0 0.058 13.2 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase MarR PF01047.17 gi|284165571|ref|YP_003403850.1| - 0.023 14.4 0.0 0.045 13.4 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_38 PF13936.1 gi|284165571|ref|YP_003403850.1| - 0.029 13.9 0.0 0.066 12.7 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_40 PF14493.1 gi|284165571|ref|YP_003403850.1| - 0.031 14.4 0.1 0.071 13.3 0.0 1.6 2 0 0 2 2 1 0 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|284165571|ref|YP_003403850.1| - 0.035 14.0 0.0 0.058 13.3 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.1 gi|284165571|ref|YP_003403850.1| - 0.036 13.7 0.0 0.063 12.9 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_Tnp_ISL3 PF13542.1 gi|284165571|ref|YP_003403850.1| - 0.037 13.2 0.0 0.081 12.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_41 PF14502.1 gi|284165571|ref|YP_003403850.1| - 0.038 13.5 0.0 0.091 12.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Mga PF05043.8 gi|284165571|ref|YP_003403850.1| - 0.056 13.7 0.0 0.14 12.4 0.0 1.6 2 0 0 2 2 1 0 Mga helix-turn-helix domain DUF4250 PF14056.1 gi|284165571|ref|YP_003403850.1| - 0.069 12.8 0.1 0.19 11.4 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4250) HTH_1 PF00126.22 gi|284165571|ref|YP_003403850.1| - 0.091 12.5 0.1 0.2 11.3 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family GerE PF00196.14 gi|284165571|ref|YP_003403850.1| - 0.095 12.0 0.1 0.24 10.7 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_34 PF13601.1 gi|284165571|ref|YP_003403850.1| - 0.11 12.5 0.0 0.25 11.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_36 PF13730.1 gi|284165571|ref|YP_003403850.1| - 0.12 12.5 0.0 0.21 11.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|284165571|ref|YP_003403850.1| - 0.15 11.5 0.0 0.27 10.7 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 NCD3G PF07562.9 gi|284165574|ref|YP_003403853.1| - 0.0013 18.4 0.9 0.0016 18.1 0.6 1.1 1 0 0 1 1 1 1 Nine Cysteines Domain of family 3 GPCR DZR PF12773.2 gi|284165574|ref|YP_003403853.1| - 0.0014 18.4 0.5 0.0017 18.1 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-HIT PF04438.11 gi|284165574|ref|YP_003403853.1| - 0.0019 17.7 2.1 0.18 11.4 0.1 2.0 2 0 0 2 2 2 1 HIT zinc finger Rubredoxin PF00301.15 gi|284165574|ref|YP_003403853.1| - 0.002 17.9 3.3 0.035 13.9 0.3 2.1 2 0 0 2 2 2 1 Rubredoxin RRN7 PF11781.3 gi|284165574|ref|YP_003403853.1| - 0.0025 17.2 5.2 0.0029 17.0 3.6 1.1 1 0 0 1 1 1 1 RNA polymerase I-specific transcription initiation factor Rrn7 YhfH PF14149.1 gi|284165574|ref|YP_003403853.1| - 0.0038 16.9 1.9 0.15 11.8 1.6 2.1 1 1 1 2 2 2 1 YhfH-like protein GCC2_GCC3 PF07699.8 gi|284165574|ref|YP_003403853.1| - 0.006 16.1 1.1 0.0062 16.0 0.8 1.1 1 0 0 1 1 1 1 GCC2 and GCC3 zf-ribbon_3 PF13248.1 gi|284165574|ref|YP_003403853.1| - 0.0079 15.3 0.3 1.9 7.8 0.0 2.1 2 0 0 2 2 2 1 zinc-ribbon domain FYDLN_acid PF09538.5 gi|284165574|ref|YP_003403853.1| - 0.0092 16.5 0.3 0.0099 16.4 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (FYDLN_acid) DUF2318 PF10080.4 gi|284165574|ref|YP_003403853.1| - 0.0097 15.6 0.7 0.011 15.4 0.5 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2318) Zn-ribbon_8 PF09723.5 gi|284165574|ref|YP_003403853.1| - 0.0098 15.8 2.9 0.94 9.4 0.2 2.1 2 0 0 2 2 2 1 Zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|284165574|ref|YP_003403853.1| - 0.01 15.4 1.5 0.011 15.3 1.1 1.1 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-C2H2 PF00096.21 gi|284165574|ref|YP_003403853.1| - 0.011 15.9 1.2 0.75 10.2 0.1 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type C1_1 PF00130.17 gi|284165574|ref|YP_003403853.1| - 0.012 15.3 0.5 0.015 15.0 0.4 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc_ribbon_2 PF13240.1 gi|284165574|ref|YP_003403853.1| - 0.014 14.8 1.9 1.6 8.3 0.1 2.3 2 1 0 2 2 2 0 zinc-ribbon domain GFA PF04828.9 gi|284165574|ref|YP_003403853.1| - 0.019 14.8 0.7 0.024 14.5 0.5 1.3 1 1 0 1 1 1 0 Glutathione-dependent formaldehyde-activating enzyme HypA PF01155.14 gi|284165574|ref|YP_003403853.1| - 0.023 14.3 0.7 0.027 14.1 0.5 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family TF_Zn_Ribbon PF08271.7 gi|284165574|ref|YP_003403853.1| - 0.05 12.9 4.3 0.092 12.0 3.0 1.5 1 1 0 1 1 1 0 TFIIB zinc-binding DNA_RNApol_7kD PF03604.8 gi|284165574|ref|YP_003403853.1| - 0.073 12.5 6.5 0.71 9.3 0.9 2.1 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit TFIIS_C PF01096.13 gi|284165574|ref|YP_003403853.1| - 0.086 12.4 3.3 1.2 8.7 0.2 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Auto_anti-p27 PF06677.7 gi|284165574|ref|YP_003403853.1| - 0.086 12.6 0.2 0.11 12.3 0.1 1.1 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Prok-RING_1 PF14446.1 gi|284165574|ref|YP_003403853.1| - 0.088 12.5 1.0 0.13 11.9 0.7 1.4 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 Zn_Tnp_IS1595 PF12760.2 gi|284165574|ref|YP_003403853.1| - 0.11 12.3 6.7 0.31 10.8 4.6 1.7 1 1 0 1 1 1 0 Transposase zinc-ribbon domain DUF983 PF06170.7 gi|284165574|ref|YP_003403853.1| - 0.15 12.2 1.7 2.9 8.0 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF983) ADK_lid PF05191.9 gi|284165574|ref|YP_003403853.1| - 0.21 11.3 2.7 6.6 6.4 0.1 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-H2C2_2 PF13465.1 gi|284165574|ref|YP_003403853.1| - 0.26 11.6 2.0 3.9 7.9 1.4 2.2 1 1 0 1 1 1 0 Zinc-finger double domain Zn_Tnp_IS1 PF03811.8 gi|284165574|ref|YP_003403853.1| - 0.27 10.7 0.8 0.27 10.7 0.6 1.9 2 0 0 2 2 2 0 InsA N-terminal domain Ribosomal_L37e PF01907.14 gi|284165574|ref|YP_003403853.1| - 0.37 10.6 3.6 0.53 10.1 2.5 1.3 1 1 0 1 1 1 0 Ribosomal protein L37e DUF2296 PF10058.4 gi|284165574|ref|YP_003403853.1| - 0.38 10.5 3.9 5.6 6.7 0.2 2.1 1 1 1 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) DUF35_N PF12172.3 gi|284165574|ref|YP_003403853.1| - 0.4 10.6 4.8 1 9.3 0.8 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Cas_CXXC_CXXC PF09706.5 gi|284165574|ref|YP_003403853.1| - 0.61 10.2 2.7 2.2 8.5 0.1 2.0 1 1 1 2 2 2 0 CRISPR-associated protein (Cas_CXXC_CXXC) Sgf11 PF08209.6 gi|284165574|ref|YP_003403853.1| - 0.92 8.8 4.3 1.2 8.4 0.5 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-ISL3 PF14690.1 gi|284165574|ref|YP_003403853.1| - 0.98 9.5 6.7 0.85 9.7 1.3 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 PHD PF00628.24 gi|284165574|ref|YP_003403853.1| - 1 9.1 5.1 11 5.8 0.1 2.1 1 1 1 2 2 2 0 PHD-finger zf-IS66 PF13005.2 gi|284165574|ref|YP_003403853.1| - 1 9.3 5.5 13 5.8 0.1 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-dskA_traR PF01258.12 gi|284165574|ref|YP_003403853.1| - 1.2 8.9 6.5 5.2 6.8 4.5 1.8 1 1 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger Nudix_N_2 PF14803.1 gi|284165574|ref|YP_003403853.1| - 1.4 8.6 6.0 2.5 7.8 0.9 2.2 1 1 2 3 3 3 0 Nudix N-terminal A2L_zn_ribbon PF08792.5 gi|284165574|ref|YP_003403853.1| - 5.4 6.5 5.8 15 5.2 4.0 1.7 1 1 0 1 1 1 0 A2L zinc ribbon domain DUF309 PF03745.9 gi|284165575|ref|YP_003403854.1| - 1.7e-12 46.6 0.1 2.5e-12 46.0 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF309) AstE_AspA PF04952.9 gi|284165576|ref|YP_003403855.1| - 7.3e-14 51.3 0.1 1.5e-13 50.2 0.0 1.5 1 1 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Response_reg PF00072.19 gi|284165577|ref|YP_003403856.1| - 1.3e-19 70.2 0.0 1.5e-19 70.0 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain GSDH PF07995.6 gi|284165578|ref|YP_003403857.1| - 3.1e-69 233.5 0.0 5.1e-69 232.8 0.0 1.3 1 0 0 1 1 1 1 Glucose / Sorbosone dehydrogenase Glutaredoxin PF00462.19 gi|284165579|ref|YP_003403858.1| - 2.4e-16 59.4 0.0 2.1e-15 56.4 0.0 2.1 2 0 0 2 2 2 1 Glutaredoxin SH3BGR PF04908.10 gi|284165579|ref|YP_003403858.1| - 0.073 13.0 0.0 0.31 11.0 0.0 1.9 1 1 0 1 1 1 0 SH3-binding, glutamic acid-rich protein DZR PF12773.2 gi|284165581|ref|YP_003403860.1| - 2e-05 24.3 0.4 2.4e-05 24.0 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|284165581|ref|YP_003403860.1| - 0.00042 19.6 2.2 0.0015 17.9 0.9 2.0 2 0 0 2 2 2 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|284165581|ref|YP_003403860.1| - 0.0013 17.9 5.7 0.0021 17.1 4.0 1.3 1 0 0 1 1 1 1 zinc-ribbon domain PHF5 PF03660.9 gi|284165581|ref|YP_003403860.1| - 0.033 14.2 0.1 0.044 13.8 0.1 1.2 1 0 0 1 1 1 0 PHF5-like protein zf-RanBP PF00641.13 gi|284165581|ref|YP_003403860.1| - 0.076 12.1 2.8 0.11 11.6 2.0 1.2 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others OrfB_Zn_ribbon PF07282.6 gi|284165581|ref|YP_003403860.1| - 0.12 12.0 2.4 0.22 11.1 1.7 1.6 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Ribosomal_S14 PF00253.16 gi|284165581|ref|YP_003403860.1| - 0.13 11.6 0.4 0.21 10.9 0.3 1.3 1 0 0 1 1 1 0 Ribosomal protein S14p/S29e Rad50_zn_hook PF04423.9 gi|284165581|ref|YP_003403860.1| - 0.17 11.3 0.4 0.29 10.6 0.2 1.3 1 0 0 1 1 1 0 Rad50 zinc hook motif UPF0547 PF10571.4 gi|284165581|ref|YP_003403860.1| - 2.9 7.6 5.9 7.5 6.3 4.2 1.6 1 1 1 2 2 2 0 Uncharacterised protein family UPF0547 bPH_3 PF14470.1 gi|284165582|ref|YP_003403861.1| - 0.084 13.1 0.0 0.13 12.5 0.0 1.3 1 0 0 1 1 1 0 Bacterial PH domain DUF3488 PF11992.3 gi|284165582|ref|YP_003403861.1| - 0.4 9.2 2.7 0.86 8.1 1.8 1.5 1 1 1 2 2 2 0 Domain of unknown function (DUF3488) HMG_CoA_synt_N PF01154.12 gi|284165584|ref|YP_003403863.1| - 5.7e-27 94.3 0.0 8.4e-27 93.8 0.0 1.3 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal HMG_CoA_synt_C PF08540.5 gi|284165584|ref|YP_003403863.1| - 1.5e-23 83.6 0.0 2.8e-23 82.8 0.0 1.3 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal MAF_flag10 PF01973.13 gi|284165584|ref|YP_003403863.1| - 0.15 11.5 0.0 1.1 8.8 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function DUF115 UPF0118 PF01594.11 gi|284165585|ref|YP_003403864.1| - 5e-45 153.9 34.1 6.1e-45 153.6 23.6 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF20 Rz1 PF06085.6 gi|284165585|ref|YP_003403864.1| - 0.26 10.7 3.4 0.46 9.9 2.3 1.3 1 0 0 1 1 1 0 Lipoprotein Rz1 precursor DUF2270 PF10028.4 gi|284165586|ref|YP_003403865.1| - 7e-58 195.1 1.4 8.3e-58 194.9 1.0 1.0 1 0 0 1 1 1 1 Predicted integral membrane protein (DUF2270) DUF998 PF06197.8 gi|284165586|ref|YP_003403865.1| - 0.0019 17.5 10.9 0.015 14.6 0.9 3.1 2 1 1 3 3 3 2 Protein of unknown function (DUF998) Bax1-I PF01027.15 gi|284165586|ref|YP_003403865.1| - 0.29 10.7 5.2 4 6.9 0.8 2.1 2 0 0 2 2 2 0 Inhibitor of apoptosis-promoting Bax1 FA_desaturase PF00487.19 gi|284165586|ref|YP_003403865.1| - 1.2 8.5 7.2 1.1 8.6 1.1 2.1 1 1 1 2 2 2 0 Fatty acid desaturase DUF3592 PF12158.3 gi|284165586|ref|YP_003403865.1| - 5 6.8 6.5 2.9e+02 1.1 4.5 2.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3592) GDC-P PF02347.11 gi|284165587|ref|YP_003403866.1| - 2e-110 369.4 0.0 2.2e-110 369.3 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein Cys_Met_Meta_PP PF01053.15 gi|284165587|ref|YP_003403866.1| - 2.4e-05 22.8 0.0 3.8e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Metallophos_3 PF14582.1 gi|284165587|ref|YP_003403866.1| - 0.026 13.6 0.0 0.046 12.8 0.0 1.3 1 0 0 1 1 1 0 Metallophosphoesterase, calcineurin superfamily Aminotran_5 PF00266.14 gi|284165588|ref|YP_003403867.1| - 3.7e-10 39.1 0.0 5.4e-10 38.5 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V GDC-P PF02347.11 gi|284165588|ref|YP_003403867.1| - 1.6e-07 30.4 0.0 4e-05 22.4 0.0 2.0 2 0 0 2 2 2 2 Glycine cleavage system P-protein Beta_elim_lyase PF01212.16 gi|284165588|ref|YP_003403867.1| - 1.2e-05 24.6 0.0 2e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|284165588|ref|YP_003403867.1| - 0.012 14.6 0.0 0.021 13.8 0.0 1.4 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|284165588|ref|YP_003403867.1| - 0.083 11.1 0.0 0.15 10.2 0.0 1.3 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.16 gi|284165588|ref|YP_003403867.1| - 0.15 11.0 0.0 0.22 10.4 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class I and II zf-H2C2_2 PF13465.1 gi|284165589|ref|YP_003403868.1| - 7.6e-05 22.8 4.4 0.0088 16.2 0.5 2.1 2 0 0 2 2 2 2 Zinc-finger double domain Rubredoxin PF00301.15 gi|284165589|ref|YP_003403868.1| - 0.00043 20.0 1.2 0.62 9.9 0.3 2.2 2 0 0 2 2 2 2 Rubredoxin zf-ribbon_3 PF13248.1 gi|284165589|ref|YP_003403868.1| - 0.00044 19.3 1.9 0.057 12.6 0.2 2.3 2 0 0 2 2 2 1 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|284165589|ref|YP_003403868.1| - 0.0008 19.1 1.4 0.001 18.8 1.0 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zf-RING_3 PF14369.1 gi|284165589|ref|YP_003403868.1| - 0.00085 19.2 0.2 0.071 13.1 0.0 2.2 2 0 0 2 2 2 1 zinc-finger Lar_restr_allev PF14354.1 gi|284165589|ref|YP_003403868.1| - 0.0018 18.5 0.5 0.0018 18.5 0.3 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar Zn_Tnp_IS1 PF03811.8 gi|284165589|ref|YP_003403868.1| - 0.0021 17.5 0.1 1.5 8.3 0.0 2.2 2 0 0 2 2 2 2 InsA N-terminal domain TF_Zn_Ribbon PF08271.7 gi|284165589|ref|YP_003403868.1| - 0.003 16.8 1.1 0.11 11.8 0.1 2.2 2 0 0 2 2 2 1 TFIIB zinc-binding zf-DNA_Pol PF08996.5 gi|284165589|ref|YP_003403868.1| - 0.0047 16.3 0.1 0.0051 16.1 0.1 1.0 1 0 0 1 1 1 1 DNA Polymerase alpha zinc finger DZR PF12773.2 gi|284165589|ref|YP_003403868.1| - 0.009 15.8 0.9 0.017 14.9 0.6 1.5 1 1 0 1 1 1 1 Double zinc ribbon zf-ISL3 PF14690.1 gi|284165589|ref|YP_003403868.1| - 0.0098 15.9 4.6 0.5 10.4 0.1 2.2 1 1 1 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TerY-C PF15616.1 gi|284165589|ref|YP_003403868.1| - 0.011 15.7 0.2 0.011 15.6 0.2 1.1 1 0 0 1 1 1 0 TerY-C metal binding domain Zn-ribbon_8 PF09723.5 gi|284165589|ref|YP_003403868.1| - 0.013 15.4 0.5 0.73 9.8 0.0 2.1 2 0 0 2 2 2 0 Zinc ribbon domain Auto_anti-p27 PF06677.7 gi|284165589|ref|YP_003403868.1| - 0.013 15.2 1.2 2.7 7.8 0.2 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF3797 PF12677.2 gi|284165589|ref|YP_003403868.1| - 0.016 14.7 3.1 0.82 9.3 0.0 2.2 1 1 0 2 2 2 0 Domain of unknown function (DUF3797) DUF1272 PF06906.6 gi|284165589|ref|YP_003403868.1| - 0.019 14.8 2.2 1.2 9.0 0.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) Ribosomal_S27e PF01667.12 gi|284165589|ref|YP_003403868.1| - 0.02 14.3 1.5 0.12 11.9 0.0 2.0 1 1 1 2 2 2 0 Ribosomal protein S27 DUF983 PF06170.7 gi|284165589|ref|YP_003403868.1| - 0.021 14.9 0.4 0.71 10.0 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF983) zf-C2H2 PF00096.21 gi|284165589|ref|YP_003403868.1| - 0.025 14.9 2.5 1 9.8 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-LITAF-like PF10601.4 gi|284165589|ref|YP_003403868.1| - 0.032 14.0 1.0 0.69 9.8 0.1 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain DUF1610 PF07754.6 gi|284165589|ref|YP_003403868.1| - 0.041 13.9 3.9 0.49 10.5 0.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zinc_ribbon_2 PF13240.1 gi|284165589|ref|YP_003403868.1| - 0.049 13.1 4.7 0.26 10.8 0.8 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-MIZ PF02891.15 gi|284165589|ref|YP_003403868.1| - 0.056 12.9 0.8 0.27 10.7 0.0 1.9 2 0 0 2 2 2 0 MIZ/SP-RING zinc finger UPF0547 PF10571.4 gi|284165589|ref|YP_003403868.1| - 0.057 13.1 7.8 1.2 8.8 1.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 HypA PF01155.14 gi|284165589|ref|YP_003403868.1| - 0.062 12.9 0.2 0.08 12.6 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-C4_Topoisom PF01396.14 gi|284165589|ref|YP_003403868.1| - 0.066 12.7 0.7 3.1 7.3 0.0 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-IS66 PF13005.2 gi|284165589|ref|YP_003403868.1| - 0.069 13.1 2.1 5.8 6.9 0.0 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Opy2 PF09463.5 gi|284165589|ref|YP_003403868.1| - 0.071 13.2 0.5 8.7 6.5 0.0 2.1 2 0 0 2 2 2 0 Opy2 protein Terminase_GpA PF05876.7 gi|284165589|ref|YP_003403868.1| - 0.075 11.3 0.8 0.083 11.2 0.5 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) DUF329 PF03884.9 gi|284165589|ref|YP_003403868.1| - 0.094 12.2 0.3 2.9 7.5 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF329) PhnA_Zn_Ribbon PF08274.7 gi|284165589|ref|YP_003403868.1| - 0.11 12.3 3.3 0.58 9.9 2.3 2.0 1 1 0 1 1 1 0 PhnA Zinc-Ribbon TFIIS_C PF01096.13 gi|284165589|ref|YP_003403868.1| - 0.12 11.9 3.0 0.4 10.3 0.2 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Ribosomal_L37ae PF01780.14 gi|284165589|ref|YP_003403868.1| - 0.15 11.9 0.7 1.2 9.0 0.4 1.9 1 1 0 1 1 1 0 Ribosomal L37ae protein family RNHCP PF12647.2 gi|284165589|ref|YP_003403868.1| - 0.18 11.6 1.8 0.59 9.9 1.3 1.8 1 1 0 1 1 1 0 RNHCP domain CpXC PF14353.1 gi|284165589|ref|YP_003403868.1| - 0.21 11.5 2.9 7.6 6.5 2.0 2.0 1 1 0 1 1 1 0 CpXC protein NOB1_Zn_bind PF08772.6 gi|284165589|ref|YP_003403868.1| - 0.21 11.4 1.2 0.57 10.0 0.8 1.6 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-tcix PF14952.1 gi|284165589|ref|YP_003403868.1| - 0.22 10.8 1.6 1 8.7 0.1 2.1 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Ogr_Delta PF04606.7 gi|284165589|ref|YP_003403868.1| - 0.3 10.7 1.8 4.7 6.9 0.0 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-NADH-PPase PF09297.6 gi|284165589|ref|YP_003403868.1| - 0.3 10.6 3.6 3.8 7.1 0.5 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Sgf11 PF08209.6 gi|284165589|ref|YP_003403868.1| - 0.42 9.9 2.9 3.1 7.1 0.2 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zinc_ribbon_4 PF13717.1 gi|284165589|ref|YP_003403868.1| - 0.44 10.2 5.5 4.4 7.0 3.1 2.4 2 1 0 2 2 1 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|284165589|ref|YP_003403868.1| - 0.53 9.9 5.9 5.4 6.6 3.4 2.3 2 1 0 2 2 1 0 zinc-ribbon domain DUF4379 PF14311.1 gi|284165589|ref|YP_003403868.1| - 0.85 9.4 6.2 0.22 11.3 0.6 2.0 1 1 2 3 3 3 0 Domain of unknown function (DUF4379) DUF2296 PF10058.4 gi|284165589|ref|YP_003403868.1| - 1 9.1 3.7 25 4.6 3.0 2.2 1 1 1 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) zf-Mss51 PF13824.1 gi|284165589|ref|YP_003403868.1| - 1.1 9.1 3.8 5.8 6.8 0.3 2.0 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-TFIIB PF13453.1 gi|284165589|ref|YP_003403868.1| - 1.1 8.4 3.9 17 4.6 3.4 2.0 1 1 1 2 2 2 0 Transcription factor zinc-finger Prim_Zn_Ribbon PF08273.7 gi|284165589|ref|YP_003403868.1| - 1.6 8.8 6.0 5.3 7.1 4.1 1.8 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase DNA_ligase_ZBD PF03119.11 gi|284165589|ref|YP_003403868.1| - 2.4 7.9 8.7 7.6 6.3 0.6 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-RanBP PF00641.13 gi|284165589|ref|YP_003403868.1| - 2.5 7.2 5.2 1.7 7.7 0.7 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Cob_adeno_trans PF01923.13 gi|284165590|ref|YP_003403869.1| - 2.2e-60 203.1 0.0 2.5e-60 202.9 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase Apolipoprotein PF01442.13 gi|284165591|ref|YP_003403870.1| - 0.02 14.4 0.5 0.022 14.2 0.3 1.1 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain DUF883 PF05957.8 gi|284165591|ref|YP_003403870.1| - 0.062 13.6 1.6 0.13 12.6 0.3 1.8 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) HTH_20 PF12840.2 gi|284165592|ref|YP_003403871.1| - 0.0065 16.2 0.9 0.017 14.9 0.6 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain HrcA PF01628.16 gi|284165592|ref|YP_003403871.1| - 0.059 12.9 0.0 0.092 12.3 0.0 1.2 1 0 0 1 1 1 0 HrcA protein C terminal domain Whib PF02467.11 gi|284165593|ref|YP_003403872.1| - 0.018 15.3 0.9 0.022 15.0 0.6 1.2 1 1 0 1 1 1 0 Transcription factor WhiB MaoC_dehydratas PF01575.14 gi|284165594|ref|YP_003403873.1| - 1.5e-18 66.3 0.0 1.9e-18 66.0 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|284165594|ref|YP_003403873.1| - 4.3e-09 36.2 0.0 6.9e-09 35.5 0.0 1.3 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase FabA PF07977.8 gi|284165594|ref|YP_003403873.1| - 0.05 13.0 0.0 0.063 12.7 0.0 1.2 1 0 0 1 1 1 0 FabA-like domain 4HBT PF03061.17 gi|284165594|ref|YP_003403873.1| - 0.081 13.0 0.0 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 Thioesterase superfamily PMSR PF01625.16 gi|284165596|ref|YP_003403875.1| - 5.1e-40 136.9 0.0 7.1e-40 136.4 0.0 1.1 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase TIP39 PF14980.1 gi|284165596|ref|YP_003403875.1| - 0.13 11.9 0.3 0.26 10.9 0.2 1.6 1 0 0 1 1 1 0 TIP39 peptide DUF3364 PF11844.3 gi|284165596|ref|YP_003403875.1| - 0.17 11.9 0.7 0.33 11.0 0.5 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3364) DZR PF12773.2 gi|284165597|ref|YP_003403876.1| - 0.0012 18.6 1.0 0.0012 18.6 0.7 1.1 1 0 0 1 1 1 1 Double zinc ribbon zf-C2HC_2 PF13913.1 gi|284165597|ref|YP_003403876.1| - 0.0065 16.0 3.7 0.0074 15.9 0.3 2.1 2 0 0 2 2 2 1 zinc-finger of a C2HC-type HypA PF01155.14 gi|284165597|ref|YP_003403876.1| - 0.0066 16.1 0.8 0.0066 16.1 0.5 1.2 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family TFIIS_C PF01096.13 gi|284165597|ref|YP_003403876.1| - 0.014 15.0 1.5 0.62 9.7 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Ribosomal_L37e PF01907.14 gi|284165597|ref|YP_003403876.1| - 0.017 14.9 0.8 0.02 14.6 0.6 1.2 1 0 0 1 1 1 0 Ribosomal protein L37e RNA_POL_M_15KD PF02150.11 gi|284165597|ref|YP_003403876.1| - 0.02 14.5 5.1 0.29 10.8 0.4 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit zf-C2H2_6 PF13912.1 gi|284165597|ref|YP_003403876.1| - 0.035 14.0 3.1 0.15 12.0 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger Prok-RING_1 PF14446.1 gi|284165597|ref|YP_003403876.1| - 0.047 13.4 0.9 0.065 12.9 0.6 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-HIT PF04438.11 gi|284165597|ref|YP_003403876.1| - 0.062 12.9 1.2 2.7 7.7 0.1 2.0 2 0 0 2 2 2 0 HIT zinc finger zf-H2C2_2 PF13465.1 gi|284165597|ref|YP_003403876.1| - 0.082 13.2 1.5 0.16 12.3 0.1 2.0 2 0 0 2 2 2 0 Zinc-finger double domain zf-ribbon_3 PF13248.1 gi|284165597|ref|YP_003403876.1| - 0.14 11.4 4.1 5.7 6.2 3.1 2.2 1 1 1 2 2 2 0 zinc-ribbon domain DUF35_N PF12172.3 gi|284165597|ref|YP_003403876.1| - 0.14 12.0 1.3 0.22 11.5 0.9 1.4 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn-ribbon_8 PF09723.5 gi|284165597|ref|YP_003403876.1| - 0.22 11.4 8.1 6 6.9 5.6 2.2 1 1 0 1 1 1 0 Zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|284165597|ref|YP_003403876.1| - 0.28 10.6 3.8 0.61 9.5 2.6 1.6 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Ribosomal_L32p PF01783.18 gi|284165597|ref|YP_003403876.1| - 0.32 11.2 1.3 0.7 10.1 0.9 1.7 1 1 0 1 1 1 0 Ribosomal L32p protein family zf-C2H2 PF00096.21 gi|284165597|ref|YP_003403876.1| - 0.36 11.2 4.0 0.42 11.0 0.3 2.1 2 0 0 2 2 2 0 Zinc finger, C2H2 type Zn_Tnp_IS1595 PF12760.2 gi|284165597|ref|YP_003403876.1| - 0.41 10.5 3.9 8 6.3 0.3 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|284165597|ref|YP_003403876.1| - 0.46 10.1 4.1 0.64 9.7 0.6 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Nudix_N_2 PF14803.1 gi|284165597|ref|YP_003403876.1| - 0.81 9.4 4.1 14 5.4 0.1 2.3 1 1 1 2 2 2 0 Nudix N-terminal zf-CCHC PF00098.18 gi|284165597|ref|YP_003403876.1| - 1 9.3 4.0 4.8 7.2 1.0 2.2 2 0 0 2 2 2 0 Zinc knuckle zinc_ribbon_2 PF13240.1 gi|284165597|ref|YP_003403876.1| - 1.3 8.5 6.0 3 7.4 0.8 2.2 1 1 1 2 2 2 0 zinc-ribbon domain Tropomyosin PF00261.15 gi|284165598|ref|YP_003403877.1| - 0.0073 15.4 1.2 0.01 14.9 0.9 1.2 1 0 0 1 1 1 1 Tropomyosin Cortex-I_coil PF09304.5 gi|284165598|ref|YP_003403877.1| - 0.021 14.8 0.4 0.034 14.2 0.3 1.3 1 0 0 1 1 1 0 Cortexillin I, coiled coil SMC_N PF02463.14 gi|284165598|ref|YP_003403877.1| - 0.042 13.0 0.0 0.067 12.4 0.0 1.4 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain HR1 PF02185.11 gi|284165598|ref|YP_003403877.1| - 0.08 12.6 0.1 0.13 11.9 0.1 1.4 1 0 0 1 1 1 0 Hr1 repeat Sugarporin_N PF11471.3 gi|284165598|ref|YP_003403877.1| - 0.7 9.5 3.4 1.2 8.8 2.3 1.3 1 0 0 1 1 1 0 Maltoporin periplasmic N-terminal extension IclR PF01614.13 gi|284165599|ref|YP_003403878.1| - 3.5e-33 114.0 0.0 6e-30 103.5 0.0 2.1 2 0 0 2 2 2 2 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|284165599|ref|YP_003403878.1| - 5.5e-15 54.6 0.9 1.8e-14 53.0 0.2 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|284165599|ref|YP_003403878.1| - 1.9e-07 30.3 0.0 1.4e-06 27.6 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|284165599|ref|YP_003403878.1| - 5.6e-07 29.2 0.1 1.3e-06 28.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|284165599|ref|YP_003403878.1| - 9.6e-06 25.1 0.0 1.8e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|284165599|ref|YP_003403878.1| - 1.8e-05 24.2 0.1 0.00015 21.3 0.0 2.2 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|284165599|ref|YP_003403878.1| - 0.00023 20.8 0.0 0.00044 19.9 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.1 gi|284165599|ref|YP_003403878.1| - 0.00053 19.9 0.0 0.0014 18.6 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|284165599|ref|YP_003403878.1| - 0.00095 18.8 0.0 0.0021 17.7 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|284165599|ref|YP_003403878.1| - 0.0019 17.9 0.0 0.0034 17.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix Penicillinase_R PF03965.11 gi|284165599|ref|YP_003403878.1| - 0.0029 17.6 0.0 0.0063 16.5 0.0 1.5 1 0 0 1 1 1 1 Penicillinase repressor HTH_40 PF14493.1 gi|284165599|ref|YP_003403878.1| - 0.003 17.7 0.0 0.0063 16.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|284165599|ref|YP_003403878.1| - 0.0042 17.3 0.1 0.012 15.9 0.1 1.7 2 0 0 2 2 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|284165599|ref|YP_003403878.1| - 0.0048 16.7 0.0 0.0099 15.8 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.7 gi|284165599|ref|YP_003403878.1| - 0.0053 16.3 0.1 0.021 14.4 0.0 2.0 2 0 0 2 2 2 1 HTH domain LexA_DNA_bind PF01726.11 gi|284165599|ref|YP_003403878.1| - 0.0074 15.8 0.0 0.012 15.1 0.0 1.3 1 0 0 1 1 1 1 LexA DNA binding domain HTH_AsnC-type PF13404.1 gi|284165599|ref|YP_003403878.1| - 0.015 14.8 0.2 1.2 8.7 0.1 2.3 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Sulfolobus_pRN PF05584.6 gi|284165599|ref|YP_003403878.1| - 0.065 13.2 0.0 0.2 11.6 0.0 1.7 2 0 0 2 2 2 0 Sulfolobus plasmid regulatory protein HTH_36 PF13730.1 gi|284165599|ref|YP_003403878.1| - 0.068 13.3 0.2 0.2 11.7 0.0 1.9 2 0 0 2 2 1 0 Helix-turn-helix domain DUF3489 PF11994.3 gi|284165599|ref|YP_003403878.1| - 0.076 12.9 0.1 0.14 12.1 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3489) Acyl-CoA_dh_1 PF00441.19 gi|284165600|ref|YP_003403879.1| - 6.2e-47 159.4 2.0 9.4e-47 158.8 1.4 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|284165600|ref|YP_003403879.1| - 2.2e-22 78.2 0.0 4.6e-22 77.2 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|284165600|ref|YP_003403879.1| - 2.5e-17 63.3 0.6 3.6e-17 62.8 0.4 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|284165600|ref|YP_003403879.1| - 7.4e-15 55.5 0.0 2e-14 54.1 0.0 1.8 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain HpaB_N PF11794.3 gi|284165600|ref|YP_003403879.1| - 0.049 13.0 0.0 0.081 12.2 0.0 1.3 1 0 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase N terminal Lactamase_B PF00753.22 gi|284165601|ref|YP_003403880.1| - 3.5e-20 72.4 9.0 5.8e-20 71.7 6.2 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|284165601|ref|YP_003403880.1| - 1.9e-07 30.8 0.3 2.7e-07 30.3 0.2 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain 2-Hacid_dh_C PF02826.14 gi|284165602|ref|YP_003403881.1| - 3.6e-56 189.1 0.0 8e-56 187.9 0.0 1.6 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|284165602|ref|YP_003403881.1| - 6.1e-12 45.1 0.0 7.4e-12 44.8 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain F420_oxidored PF03807.12 gi|284165602|ref|YP_003403881.1| - 1.5e-05 25.3 0.1 0.00028 21.2 0.0 2.3 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent AdoHcyase_NAD PF00670.16 gi|284165602|ref|YP_003403881.1| - 0.00012 21.9 0.0 0.0003 20.6 0.0 1.6 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_2 PF03446.10 gi|284165602|ref|YP_003403881.1| - 0.0021 17.9 0.0 0.0041 16.9 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.13 gi|284165602|ref|YP_003403881.1| - 0.0062 16.5 0.2 0.5 10.3 0.0 2.4 2 0 0 2 2 2 1 TrkA-N domain NAD_Gly3P_dh_N PF01210.18 gi|284165602|ref|YP_003403881.1| - 0.041 13.6 0.6 5.8 6.6 0.0 2.8 3 1 1 4 4 4 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|284165602|ref|YP_003403881.1| - 0.1 12.2 0.6 0.16 11.5 0.0 1.6 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Oxidored_molyb PF00174.14 gi|284165603|ref|YP_003403882.1| - 1.7e-39 134.9 0.0 2.6e-39 134.3 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Mo-co_dimer PF03404.11 gi|284165603|ref|YP_003403882.1| - 1.3e-10 40.9 0.5 6.5e-10 38.7 0.3 2.0 2 0 0 2 2 2 1 Mo-co oxidoreductase dimerisation domain BNR PF02012.15 gi|284165603|ref|YP_003403882.1| - 0.29 11.1 1.6 0.92 9.5 1.1 1.9 1 0 0 1 1 1 0 BNR/Asp-box repeat SBP_bac_1 PF01547.20 gi|284165604|ref|YP_003403883.1| - 2.4e-13 50.5 2.3 3.2e-13 50.0 1.6 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|284165604|ref|YP_003403883.1| - 0.0029 17.4 1.9 0.0029 17.4 1.3 1.9 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.17 gi|284165605|ref|YP_003403884.1| - 3.1e-20 72.4 16.9 3.1e-20 72.4 11.7 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|284165606|ref|YP_003403885.1| - 1.6e-13 50.5 27.9 7e-12 45.2 19.3 2.4 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|284165607|ref|YP_003403886.1| - 4.1e-33 114.5 0.0 7.5e-33 113.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284165607|ref|YP_003403886.1| - 1e-06 28.9 0.0 0.001 19.1 0.0 2.9 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|284165607|ref|YP_003403886.1| - 0.0028 17.6 0.3 0.0071 16.3 0.2 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|284165607|ref|YP_003403886.1| - 0.0051 16.9 0.0 0.011 15.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|284165607|ref|YP_003403886.1| - 0.015 15.5 0.3 0.015 15.5 0.2 2.0 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|284165607|ref|YP_003403886.1| - 0.026 13.3 0.0 0.035 12.9 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_17 PF13207.1 gi|284165607|ref|YP_003403886.1| - 0.029 15.1 0.2 0.089 13.6 0.1 1.9 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|284165607|ref|YP_003403886.1| - 0.042 13.0 0.0 3.3 6.8 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|284165607|ref|YP_003403886.1| - 0.047 13.2 0.1 0.087 12.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain TOBE_2 PF08402.5 gi|284165607|ref|YP_003403886.1| - 0.056 13.4 0.0 0.16 12.0 0.0 1.8 1 0 0 1 1 1 0 TOBE domain DUF258 PF03193.11 gi|284165607|ref|YP_003403886.1| - 0.061 12.5 0.0 0.099 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_5 PF07728.9 gi|284165607|ref|YP_003403886.1| - 0.073 12.7 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|284165607|ref|YP_003403886.1| - 0.087 12.6 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain PRC PF05239.11 gi|284165607|ref|YP_003403886.1| - 0.09 12.6 0.3 0.21 11.4 0.2 1.7 1 0 0 1 1 1 0 PRC-barrel domain Rad17 PF03215.10 gi|284165607|ref|YP_003403886.1| - 0.099 11.2 0.1 0.15 10.7 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_19 PF13245.1 gi|284165607|ref|YP_003403886.1| - 0.13 12.0 0.1 0.31 10.8 0.1 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_30 PF13604.1 gi|284165607|ref|YP_003403886.1| - 0.15 11.6 0.5 0.32 10.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|284165607|ref|YP_003403886.1| - 0.17 12.2 0.1 0.33 11.2 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|284165607|ref|YP_003403886.1| - 0.18 10.8 0.0 4.4 6.2 0.0 2.0 1 1 1 2 2 2 0 AAA ATPase domain RDD PF06271.7 gi|284165608|ref|YP_003403887.1| - 5.2e-15 55.5 0.0 6.6e-15 55.2 0.0 1.1 1 0 0 1 1 1 1 RDD family gpW PF02831.10 gi|284165608|ref|YP_003403887.1| - 0.13 11.8 0.0 0.27 10.7 0.0 1.6 1 0 0 1 1 1 0 gpW Thiolase_C PF02803.13 gi|284165610|ref|YP_003403889.1| - 1.1e-07 31.2 0.2 5.6e-06 25.7 0.0 2.4 2 0 0 2 2 2 2 Thiolase, C-terminal domain DUF35 PF01796.12 gi|284165611|ref|YP_003403890.1| - 6.9e-20 71.0 0.2 1e-19 70.4 0.2 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|284165611|ref|YP_003403890.1| - 1.2e-11 44.2 2.4 2.7e-11 43.0 1.6 1.6 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) FdhE PF04216.7 gi|284165611|ref|YP_003403890.1| - 0.00083 19.1 0.1 0.00096 18.9 0.1 1.1 1 0 0 1 1 1 1 Protein involved in formate dehydrogenase formation Nudix_N_2 PF14803.1 gi|284165611|ref|YP_003403890.1| - 0.086 12.5 4.6 5 6.8 3.2 2.4 1 1 0 1 1 1 0 Nudix N-terminal B9-C2 PF07162.6 gi|284165611|ref|YP_003403890.1| - 0.13 12.0 0.1 0.14 11.8 0.0 1.1 1 0 0 1 1 1 0 Ciliary basal body-associated, B9 protein MaoC_dehydrat_N PF13452.1 gi|284165612|ref|YP_003403891.1| - 3.8e-36 123.7 2.7 1.8e-29 102.1 0.1 3.1 2 1 0 2 2 2 2 N-terminal half of MaoC dehydratase MaoC_dehydratas PF01575.14 gi|284165612|ref|YP_003403891.1| - 2.4e-16 59.2 0.2 7e-15 54.4 0.0 2.7 3 0 0 3 3 3 1 MaoC like domain 4HBT PF03061.17 gi|284165612|ref|YP_003403891.1| - 0.001 19.1 0.3 2.4 8.3 0.0 2.7 2 0 0 2 2 2 2 Thioesterase superfamily adh_short PF00106.20 gi|284165613|ref|YP_003403892.1| - 3.2e-38 131.2 3.0 4.3e-38 130.8 2.1 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|284165613|ref|YP_003403892.1| - 4e-28 98.7 0.2 4.9e-28 98.5 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|284165613|ref|YP_003403892.1| - 5.1e-15 55.6 1.0 6.5e-15 55.2 0.7 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|284165613|ref|YP_003403892.1| - 4.3e-05 23.0 1.0 5.3e-05 22.7 0.2 1.7 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|284165613|ref|YP_003403892.1| - 0.0012 18.9 2.5 0.002 18.1 1.8 1.6 1 1 0 1 1 1 1 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|284165613|ref|YP_003403892.1| - 0.0014 17.5 0.2 0.0019 17.1 0.1 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Saccharop_dh PF03435.13 gi|284165613|ref|YP_003403892.1| - 0.0018 17.3 0.1 0.0026 16.8 0.1 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase F420_oxidored PF03807.12 gi|284165613|ref|YP_003403892.1| - 0.0031 17.9 0.1 0.0084 16.5 0.1 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent THF_DHG_CYH_C PF02882.14 gi|284165613|ref|YP_003403892.1| - 0.0048 15.9 0.4 0.0092 15.0 0.0 1.6 2 0 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 3Beta_HSD PF01073.14 gi|284165613|ref|YP_003403892.1| - 0.013 14.2 0.1 0.018 13.7 0.1 1.2 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|284165613|ref|YP_003403892.1| - 0.014 14.2 0.4 0.041 12.7 0.1 2.0 2 0 0 2 2 2 0 RmlD substrate binding domain Eno-Rase_NADH_b PF12242.3 gi|284165613|ref|YP_003403892.1| - 0.029 14.1 0.1 0.065 13.0 0.1 1.7 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NmrA PF05368.8 gi|284165613|ref|YP_003403892.1| - 0.064 12.4 0.3 0.12 11.5 0.2 1.4 1 0 0 1 1 1 0 NmrA-like family Helicase_RecD PF05127.9 gi|284165613|ref|YP_003403892.1| - 0.092 12.3 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 Helicase AMP-binding PF00501.23 gi|284165614|ref|YP_003403893.1| - 4.9e-101 338.1 0.1 6.1e-101 337.8 0.1 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|284165614|ref|YP_003403893.1| - 9.1e-19 68.1 0.1 9.1e-19 68.1 0.1 2.0 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain MFS_1 PF07690.11 gi|284165615|ref|YP_003403894.1| - 2.7e-34 118.4 54.6 1.6e-20 73.1 24.3 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily UNC-93 PF05978.11 gi|284165615|ref|YP_003403894.1| - 0.31 10.5 7.6 1.6 8.1 0.0 3.1 2 1 1 3 3 3 0 Ion channel regulatory protein UNC-93 3HCDH_N PF02737.13 gi|284165616|ref|YP_003403895.1| - 3.2e-54 183.3 2.9 4e-54 183.0 0.5 1.8 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.17 gi|284165616|ref|YP_003403895.1| - 4.9e-12 46.0 0.0 1.4e-11 44.5 0.0 1.8 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|284165616|ref|YP_003403895.1| - 5.6e-07 29.4 0.2 8.2e-06 25.6 0.2 2.1 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.10 gi|284165616|ref|YP_003403895.1| - 2.7e-06 27.2 1.0 0.00015 21.6 0.1 2.2 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase DAO PF01266.19 gi|284165616|ref|YP_003403895.1| - 0.00024 20.1 0.2 0.00041 19.3 0.1 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|284165616|ref|YP_003403895.1| - 0.00042 20.2 0.3 0.00077 19.4 0.2 1.4 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain F420_oxidored PF03807.12 gi|284165616|ref|YP_003403895.1| - 0.0021 18.4 1.9 0.0042 17.4 0.6 2.1 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.13 gi|284165616|ref|YP_003403895.1| - 0.0027 17.6 1.9 0.0041 17.1 0.1 2.1 2 1 0 2 2 2 1 TrkA-N domain Pyr_redox PF00070.22 gi|284165616|ref|YP_003403895.1| - 0.021 15.2 2.9 0.024 15.0 0.9 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|284165616|ref|YP_003403895.1| - 0.059 12.7 0.5 0.14 11.5 0.4 1.6 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox_2 PF07992.9 gi|284165616|ref|YP_003403895.1| - 0.063 13.1 0.8 0.63 9.8 0.6 2.1 1 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|284165616|ref|YP_003403895.1| - 0.078 12.0 0.9 0.13 11.2 0.3 1.5 2 0 0 2 2 2 0 FAD binding domain NAD_binding_7 PF13241.1 gi|284165616|ref|YP_003403895.1| - 0.12 12.6 0.8 0.29 11.4 0.6 1.9 1 1 0 1 1 1 0 Putative NAD(P)-binding AdoHcyase_NAD PF00670.16 gi|284165616|ref|YP_003403895.1| - 0.19 11.5 1.3 0.35 10.6 0.1 2.0 3 0 0 3 3 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain FumaraseC_C PF10415.4 gi|284165616|ref|YP_003403895.1| - 0.9 9.6 3.1 11 6.2 0.2 2.8 3 0 0 3 3 3 0 Fumarase C C-terminus ECH PF00378.15 gi|284165617|ref|YP_003403896.1| - 4.1e-57 193.1 0.0 5.1e-57 192.7 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family ECH_C PF13766.1 gi|284165617|ref|YP_003403896.1| - 0.019 15.1 0.0 0.047 13.8 0.0 1.7 2 0 0 2 2 2 0 2-enoyl-CoA Hydratase C-terminal region Thiolase_N PF00108.18 gi|284165618|ref|YP_003403897.1| - 1.8e-60 204.1 0.0 6.8e-59 198.9 0.0 2.4 2 1 0 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|284165618|ref|YP_003403897.1| - 8.7e-43 144.6 0.1 1.4e-42 143.9 0.1 1.4 1 0 0 1 1 1 1 Thiolase, C-terminal domain ACP_syn_III_C PF08541.5 gi|284165618|ref|YP_003403897.1| - 0.0031 17.5 0.1 0.0062 16.5 0.1 1.5 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Acyl-CoA_dh_1 PF00441.19 gi|284165619|ref|YP_003403898.1| - 1.2e-38 132.5 4.6 2.6e-38 131.4 3.2 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|284165619|ref|YP_003403898.1| - 6.2e-19 67.2 0.0 1.7e-18 65.8 0.0 1.8 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.11 gi|284165619|ref|YP_003403898.1| - 1e-18 67.9 0.8 1e-18 67.9 0.6 2.0 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|284165619|ref|YP_003403898.1| - 5.8e-14 52.4 2.6 1.2e-13 51.4 1.8 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain DUF4282 PF14110.1 gi|284165620|ref|YP_003403899.1| - 5.6 7.2 7.6 12 6.1 5.3 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4282) Cytochrom_B_N PF00033.14 gi|284165621|ref|YP_003403900.1| - 4.2e-26 91.4 16.7 5.4e-24 84.5 11.4 2.1 2 0 0 2 2 2 2 Cytochrome b(N-terminal)/b6/petB Ni_hydr_CYTB PF01292.15 gi|284165621|ref|YP_003403900.1| - 1.9e-20 72.9 17.8 2.3e-20 72.7 9.9 2.1 2 1 0 2 2 2 1 Prokaryotic cytochrome b561 DUF1191 PF06697.7 gi|284165621|ref|YP_003403900.1| - 0.089 11.5 0.2 3.1 6.5 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1191) PIRT PF15099.1 gi|284165621|ref|YP_003403900.1| - 0.57 9.4 2.8 0.42 9.8 0.1 2.0 2 0 0 2 2 2 0 Phosphoinositide-interacting protein family DUF1183 PF06682.7 gi|284165622|ref|YP_003403901.1| - 0.052 13.1 0.3 0.24 10.9 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1183) Fer4_11 PF13247.1 gi|284165623|ref|YP_003403902.1| - 4e-21 74.7 11.2 4e-21 74.7 7.8 2.2 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|284165623|ref|YP_003403902.1| - 8.1e-14 51.7 23.9 2.7e-07 30.8 5.2 2.5 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|284165623|ref|YP_003403902.1| - 1.1e-11 44.7 27.2 2.7e-06 27.5 5.7 3.2 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|284165623|ref|YP_003403902.1| - 7.8e-09 34.7 39.5 1.5e-05 24.3 0.7 5.5 6 0 0 6 6 6 3 4Fe-4S binding domain Fer4_6 PF12837.2 gi|284165623|ref|YP_003403902.1| - 1e-08 34.6 36.9 0.00069 19.3 0.4 5.0 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_10 PF13237.1 gi|284165623|ref|YP_003403902.1| - 7.9e-08 31.9 29.5 0.00038 20.2 7.7 3.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|284165623|ref|YP_003403902.1| - 2e-07 30.9 21.0 6.9e-05 22.7 4.2 2.7 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|284165623|ref|YP_003403902.1| - 2.4e-07 30.4 25.3 3.9e-05 23.4 5.6 3.6 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|284165623|ref|YP_003403902.1| - 2.8e-06 26.9 37.3 0.00036 20.2 2.8 4.7 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_3 PF12798.2 gi|284165623|ref|YP_003403902.1| - 4.7e-06 26.7 41.5 0.072 13.6 4.3 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_4 PF12800.2 gi|284165623|ref|YP_003403902.1| - 3.2e-05 23.9 32.7 0.0041 17.3 1.6 4.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|284165623|ref|YP_003403902.1| - 0.0035 18.0 28.6 0.073 13.8 1.1 4.4 1 1 4 5 5 5 3 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|284165623|ref|YP_003403902.1| - 0.021 15.1 29.5 0.13 12.6 0.8 4.1 2 2 1 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|284165623|ref|YP_003403902.1| - 0.035 14.4 0.4 0.035 14.4 0.3 4.2 2 1 1 3 3 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|284165623|ref|YP_003403902.1| - 3.4 8.1 28.6 2 8.9 1.7 4.0 2 1 2 4 4 4 0 4Fe-4S dicluster domain Molybdopterin PF00384.17 gi|284165624|ref|YP_003403903.1| - 5.6e-48 163.7 0.3 1.3e-47 162.5 0.2 1.6 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|284165624|ref|YP_003403903.1| - 7.2e-16 57.9 0.1 2.1e-15 56.5 0.1 1.8 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|284165624|ref|YP_003403903.1| - 7.9e-12 44.8 0.1 1.6e-11 43.8 0.1 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain TAT_signal PF10518.4 gi|284165624|ref|YP_003403903.1| - 0.038 13.9 0.7 0.098 12.7 0.5 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence FlpD PF02662.11 gi|284165625|ref|YP_003403904.1| - 5.1e-25 87.5 0.0 1.4e-24 86.1 0.0 1.8 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit Fer4_7 PF12838.2 gi|284165625|ref|YP_003403904.1| - 3.7e-16 59.2 38.4 6.2e-09 36.1 7.9 5.5 6 0 0 6 6 5 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|284165625|ref|YP_003403904.1| - 8e-12 45.2 39.9 1.6e-05 25.0 7.4 5.7 5 1 0 5 5 5 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|284165625|ref|YP_003403904.1| - 1e-11 43.9 54.6 6.6e-06 25.5 1.5 7.8 8 0 0 8 8 7 6 4Fe-4S binding domain Fer4_16 PF13484.1 gi|284165625|ref|YP_003403904.1| - 1.2e-09 38.7 31.0 0.0006 20.5 0.2 7.0 5 2 1 6 6 6 4 4Fe-4S double cluster binding domain Fer4_11 PF13247.1 gi|284165625|ref|YP_003403904.1| - 1.6e-08 34.2 11.4 0.00021 21.1 1.1 3.6 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|284165625|ref|YP_003403904.1| - 2.6e-08 33.5 44.1 3.3e-05 23.6 6.2 5.1 4 2 0 4 4 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|284165625|ref|YP_003403904.1| - 3e-06 26.9 38.1 0.00025 20.8 5.5 5.6 5 1 1 6 6 5 4 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|284165625|ref|YP_003403904.1| - 1.3e-05 24.8 2.3 1.3e-05 24.8 1.6 8.3 9 0 0 9 9 8 4 4Fe-4S binding domain Fer4_17 PF13534.1 gi|284165625|ref|YP_003403904.1| - 2.5e-05 24.5 29.8 0.0084 16.4 0.2 6.3 5 1 1 6 6 6 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|284165625|ref|YP_003403904.1| - 0.00086 19.2 43.5 0.056 13.4 2.8 5.8 4 2 3 8 8 7 4 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|284165625|ref|YP_003403904.1| - 0.0013 18.5 3.1 0.0013 18.5 2.1 7.0 7 0 0 7 7 7 3 4Fe-4S binding domain Fer4_4 PF12800.2 gi|284165625|ref|YP_003403904.1| - 0.011 16.0 4.3 0.011 16.0 3.0 8.1 9 0 0 9 9 7 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|284165625|ref|YP_003403904.1| - 1.4 9.3 33.9 6.4 7.2 0.4 6.6 6 0 0 6 6 6 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|284165625|ref|YP_003403904.1| - 6.1 7.3 43.2 1.1 9.6 2.9 6.5 4 2 2 6 6 5 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|284165625|ref|YP_003403904.1| - 8.7 7.1 65.8 0.07 13.7 2.2 7.8 8 0 0 8 8 7 0 4Fe-4S binding domain Nitrate_red_del PF02613.10 gi|284165626|ref|YP_003403905.1| - 1.9e-22 79.5 0.3 2.8e-22 79.0 0.2 1.2 1 0 0 1 1 1 1 Nitrate reductase delta subunit PCRF PF03462.13 gi|284165629|ref|YP_003403908.1| - 0.03 14.0 0.2 0.039 13.6 0.1 1.1 1 0 0 1 1 1 0 PCRF domain UPF0220 PF05255.6 gi|284165630|ref|YP_003403909.1| - 0.035 13.3 0.3 0.045 13.0 0.2 1.3 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0220) DUF4006 PF13179.1 gi|284165630|ref|YP_003403909.1| - 4.1 7.0 5.2 7.4 6.2 3.6 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF4006) PAS_3 PF08447.6 gi|284165631|ref|YP_003403910.1| - 4.6e-46 154.8 9.2 7.5e-21 74.0 0.2 5.8 5 1 0 5 5 5 3 PAS fold PAS_9 PF13426.1 gi|284165631|ref|YP_003403910.1| - 1.2e-39 134.8 8.5 4.9e-12 46.1 0.0 4.8 5 0 0 5 5 5 4 PAS domain PAS_4 PF08448.5 gi|284165631|ref|YP_003403910.1| - 2.2e-34 117.8 20.7 7.9e-10 38.7 0.3 4.6 4 0 0 4 4 4 4 PAS fold HATPase_c PF02518.21 gi|284165631|ref|YP_003403910.1| - 1.9e-31 108.0 0.1 3.8e-30 103.8 0.0 2.4 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|284165631|ref|YP_003403910.1| - 2.1e-31 108.0 10.7 3.5e-14 52.5 0.1 5.7 6 0 0 6 6 6 4 PAS fold PAS_8 PF13188.1 gi|284165631|ref|YP_003403910.1| - 2.1e-22 78.1 0.3 1e-06 28.3 0.0 4.6 4 0 0 4 4 4 3 PAS domain PAS_7 PF12860.2 gi|284165631|ref|YP_003403910.1| - 1.5e-11 44.2 3.3 0.0021 18.0 0.0 4.7 4 1 0 4 4 4 3 PAS fold HisKA PF00512.20 gi|284165631|ref|YP_003403910.1| - 1.1e-10 41.3 2.1 3.3e-10 39.8 0.1 2.8 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.1 gi|284165631|ref|YP_003403910.1| - 2.1e-05 24.1 0.0 4.7e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.1 gi|284165631|ref|YP_003403910.1| - 0.0022 17.7 0.1 0.0061 16.3 0.1 1.9 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_10 PF13596.1 gi|284165631|ref|YP_003403910.1| - 0.0058 16.8 0.3 13 6.1 0.0 4.5 5 0 0 5 5 5 0 PAS domain HATPase_c_3 PF13589.1 gi|284165631|ref|YP_003403910.1| - 0.017 14.7 0.0 0.036 13.7 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFOR_C PF01314.13 gi|284165633|ref|YP_003403912.1| - 3.1e-95 319.1 0.0 3.9e-95 318.7 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|284165633|ref|YP_003403912.1| - 3.4e-62 209.3 0.1 5.3e-62 208.7 0.0 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain ADH_N PF08240.7 gi|284165635|ref|YP_003403914.1| - 1e-26 92.8 1.3 1.6e-26 92.2 0.2 1.8 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|284165635|ref|YP_003403914.1| - 2.1e-23 82.2 0.6 3.1e-23 81.7 0.4 1.2 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|284165635|ref|YP_003403914.1| - 2.2e-06 28.5 0.1 3.4e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.16 gi|284165635|ref|YP_003403914.1| - 0.0018 17.8 0.1 0.0035 16.9 0.0 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain ELFV_dehydrog PF00208.16 gi|284165635|ref|YP_003403914.1| - 0.036 13.6 0.0 0.05 13.1 0.0 1.2 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase GFO_IDH_MocA PF01408.17 gi|284165636|ref|YP_003403915.1| - 2e-28 99.2 0.0 3.5e-28 98.5 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|284165636|ref|YP_003403915.1| - 1.1e-06 28.4 0.2 4.1e-06 26.5 0.1 1.9 1 1 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Saccharop_dh PF03435.13 gi|284165636|ref|YP_003403915.1| - 0.00013 21.0 0.1 0.00018 20.6 0.0 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_3 PF03447.11 gi|284165636|ref|YP_003403915.1| - 0.00055 20.3 0.0 0.0011 19.3 0.0 1.5 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|284165636|ref|YP_003403915.1| - 0.0067 16.7 0.0 0.013 15.8 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain ApbA PF02558.11 gi|284165636|ref|YP_003403915.1| - 0.01 15.3 0.0 0.019 14.4 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.9 gi|284165636|ref|YP_003403915.1| - 0.012 14.9 0.5 0.043 13.2 0.3 1.9 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain zf-CCHC_2 PF13696.1 gi|284165637|ref|YP_003403916.1| - 0.058 12.8 0.1 0.11 11.9 0.1 1.4 1 0 0 1 1 1 0 Zinc knuckle zf-nanos PF05741.8 gi|284165637|ref|YP_003403916.1| - 0.11 12.4 1.1 0.33 10.9 0.8 1.8 1 1 0 1 1 1 0 Nanos RNA binding domain Churchill PF06573.6 gi|284165637|ref|YP_003403916.1| - 0.22 11.5 1.3 0.28 11.1 0.9 1.3 1 1 0 1 1 1 0 Churchill protein Rubredoxin PF00301.15 gi|284165637|ref|YP_003403916.1| - 0.23 11.3 3.6 0.5 10.2 0.8 2.3 1 1 1 2 2 2 0 Rubredoxin Gas_vesicle PF00741.13 gi|284165638|ref|YP_003403917.1| - 6.8e-12 45.0 7.5 8.8e-12 44.7 5.2 1.1 1 0 0 1 1 1 1 Gas vesicle protein DUF2201_N PF13203.1 gi|284165638|ref|YP_003403917.1| - 0.037 13.2 0.9 0.039 13.1 0.7 1.1 1 0 0 1 1 1 0 Putative metallopeptidase domain Corona_nucleoca PF00937.13 gi|284165638|ref|YP_003403917.1| - 4.5 6.1 11.9 5.9 5.7 8.2 1.1 1 0 0 1 1 1 0 Coronavirus nucleocapsid protein GvpL_GvpF PF06386.6 gi|284165639|ref|YP_003403918.1| - 2.5e-64 217.2 0.0 3.2e-64 216.9 0.0 1.1 1 0 0 1 1 1 1 Gas vesicle synthesis protein GvpL/GvpF GvpK PF05121.7 gi|284165640|ref|YP_003403919.1| - 7.7e-24 83.3 5.7 9.5e-24 83.0 4.0 1.1 1 0 0 1 1 1 1 Gas vesicle protein K DUF2730 PF10805.3 gi|284165640|ref|YP_003403919.1| - 0.03 14.0 0.1 0.044 13.5 0.1 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2730) Phage_GP20 PF06810.6 gi|284165640|ref|YP_003403919.1| - 0.078 12.4 0.2 0.1 12.0 0.1 1.2 1 0 0 1 1 1 0 Phage minor structural protein GP20 FlxA PF14282.1 gi|284165640|ref|YP_003403919.1| - 0.13 12.2 0.0 0.16 11.8 0.0 1.2 1 0 0 1 1 1 0 FlxA-like protein Halogen_Hydrol PF10112.4 gi|284165640|ref|YP_003403919.1| - 0.14 11.5 0.1 0.47 9.8 0.0 1.6 1 1 1 2 2 2 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein Gas_vesicle PF00741.13 gi|284165641|ref|YP_003403920.1| - 7.7e-14 51.2 4.1 1.1e-13 50.7 2.9 1.2 1 0 0 1 1 1 1 Gas vesicle protein HMG14_17 PF01101.13 gi|284165641|ref|YP_003403920.1| - 1.8 9.2 11.3 3 8.5 6.5 2.2 1 1 1 2 2 2 0 HMG14 and HMG17 HSP20 PF00011.16 gi|284165643|ref|YP_003403922.1| - 0.0014 18.4 0.0 0.19 11.5 0.0 2.4 1 1 0 1 1 1 1 Hsp20/alpha crystallin family DUF3391 PF11871.3 gi|284165643|ref|YP_003403922.1| - 0.18 12.0 0.7 0.32 11.2 0.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3391) GvpG PF05120.7 gi|284165644|ref|YP_003403923.1| - 6.3e-07 29.1 2.6 7.4e-07 28.8 1.8 1.1 1 0 0 1 1 1 1 Gas vesicle protein G THOC7 PF05615.8 gi|284165644|ref|YP_003403923.1| - 0.0038 17.4 0.4 0.0039 17.4 0.3 1.2 1 0 0 1 1 1 1 Tho complex subunit 7 Radial_spoke_3 PF06098.6 gi|284165644|ref|YP_003403923.1| - 0.07 12.1 4.7 0.083 11.8 3.3 1.1 1 0 0 1 1 1 0 Radial spoke protein 3 SHOCT PF09851.4 gi|284165644|ref|YP_003403923.1| - 2.4 7.7 10.5 0.28 10.6 3.2 2.6 3 1 1 4 4 4 0 Short C-terminal domain GvpL_GvpF PF06386.6 gi|284165645|ref|YP_003403924.1| - 8.6e-52 176.2 0.9 6e-31 107.9 0.1 2.0 1 1 1 2 2 2 2 Gas vesicle synthesis protein GvpL/GvpF FliD_C PF07195.7 gi|284165645|ref|YP_003403924.1| - 0.059 12.6 0.0 0.59 9.3 0.0 2.0 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 C-terminus Gas_vesicle PF00741.13 gi|284165646|ref|YP_003403925.1| - 9.3e-18 63.8 8.0 1.2e-17 63.4 5.5 1.2 1 0 0 1 1 1 1 Gas vesicle protein AAA_5 PF07728.9 gi|284165647|ref|YP_003403926.1| - 4.3e-16 58.9 0.0 1.1e-14 54.3 0.0 2.4 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_25 PF13481.1 gi|284165647|ref|YP_003403926.1| - 1.7e-05 24.3 0.2 5.7e-05 22.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|284165647|ref|YP_003403926.1| - 1.7e-05 24.9 0.1 0.0001 22.4 0.0 2.3 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.1 gi|284165647|ref|YP_003403926.1| - 0.00014 21.9 0.0 0.0061 16.6 0.0 2.2 1 1 0 1 1 1 1 Sigma-54 interaction domain IstB_IS21 PF01695.12 gi|284165647|ref|YP_003403926.1| - 0.00023 20.6 0.0 0.00041 19.8 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_3 PF07726.6 gi|284165647|ref|YP_003403926.1| - 0.001 18.6 0.0 0.002 17.7 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|284165647|ref|YP_003403926.1| - 0.0013 18.5 0.0 0.0083 15.8 0.0 2.0 2 0 0 2 2 2 1 Archaeal ATPase PhoH PF02562.11 gi|284165647|ref|YP_003403926.1| - 0.004 16.4 0.0 0.0089 15.2 0.0 1.5 1 0 0 1 1 1 1 PhoH-like protein Sigma54_activat PF00158.21 gi|284165647|ref|YP_003403926.1| - 0.0047 16.4 0.0 1.2 8.6 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain Zeta_toxin PF06414.7 gi|284165647|ref|YP_003403926.1| - 0.015 14.3 0.2 0.036 13.1 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin TIP49 PF06068.8 gi|284165647|ref|YP_003403926.1| - 0.018 13.7 0.1 0.41 9.3 0.0 2.1 2 0 0 2 2 2 0 TIP49 C-terminus IPT PF01745.11 gi|284165647|ref|YP_003403926.1| - 0.029 13.5 0.0 0.048 12.8 0.0 1.3 1 0 0 1 1 1 0 Isopentenyl transferase AAA_16 PF13191.1 gi|284165647|ref|YP_003403926.1| - 0.059 13.3 0.1 0.19 11.7 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_14 PF13173.1 gi|284165647|ref|YP_003403926.1| - 0.061 13.2 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|284165647|ref|YP_003403926.1| - 0.071 13.4 0.0 0.12 12.6 0.0 1.7 1 1 0 1 1 1 0 ABC transporter AAA_19 PF13245.1 gi|284165647|ref|YP_003403926.1| - 0.077 12.7 0.0 0.18 11.5 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain ResIII PF04851.10 gi|284165647|ref|YP_003403926.1| - 0.095 12.5 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit KaiC PF06745.8 gi|284165647|ref|YP_003403926.1| - 0.11 11.5 0.0 0.26 10.3 0.0 1.5 2 0 0 2 2 2 0 KaiC GvpO PF05800.6 gi|284165648|ref|YP_003403927.1| - 6.1e-28 96.6 3.7 6.1e-28 96.6 2.6 2.1 2 1 0 2 2 2 1 Gas vesicle synthesis protein GvpO zf-SAP30 PF13866.1 gi|284165648|ref|YP_003403927.1| - 0.0076 15.8 0.3 0.013 15.0 0.2 1.3 1 0 0 1 1 1 1 SAP30 zinc-finger zf-CHY PF05495.7 gi|284165649|ref|YP_003403928.1| - 2.4e-17 62.8 10.1 3.1e-17 62.4 7.0 1.1 1 0 0 1 1 1 1 CHY zinc finger SprT-like PF10263.4 gi|284165649|ref|YP_003403928.1| - 0.42 10.2 2.5 0.65 9.6 1.7 1.3 1 0 0 1 1 1 0 SprT-like family Virul_fac_BrkB PF03631.10 gi|284165650|ref|YP_003403929.1| - 1.6e-34 119.4 22.3 1.8e-34 119.2 15.5 1.0 1 0 0 1 1 1 1 Virulence factor BrkB HTH_20 PF12840.2 gi|284165651|ref|YP_003403930.1| - 4.5e-20 71.2 2.4 2.1e-10 40.2 0.8 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.15 gi|284165651|ref|YP_003403930.1| - 1.9e-13 49.8 0.1 1.4e-07 31.0 0.0 2.7 3 0 0 3 3 2 2 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|284165651|ref|YP_003403930.1| - 1.6e-12 46.8 1.2 1.9e-07 30.6 0.1 2.5 2 0 0 2 2 2 2 MarR family HTH_24 PF13412.1 gi|284165651|ref|YP_003403930.1| - 2.2e-11 42.9 0.0 0.00011 21.5 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|284165651|ref|YP_003403930.1| - 3.2e-10 39.4 5.7 0.0001 21.7 0.0 3.3 3 1 1 4 4 4 2 IclR helix-turn-helix domain MarR PF01047.17 gi|284165651|ref|YP_003403930.1| - 5.1e-10 38.9 0.0 2.3e-06 27.1 0.0 2.8 2 0 0 2 2 2 2 MarR family Fe_dep_repress PF01325.14 gi|284165651|ref|YP_003403930.1| - 3.6e-08 33.2 0.0 0.00023 21.0 0.0 2.6 2 0 0 2 2 2 2 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.14 gi|284165651|ref|YP_003403930.1| - 4e-08 32.8 0.1 0.0039 16.8 0.0 2.4 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.11 gi|284165651|ref|YP_003403930.1| - 1.9e-06 27.9 0.0 0.0046 17.0 0.0 2.4 2 0 0 2 2 2 2 Penicillinase repressor HTH_27 PF13463.1 gi|284165651|ref|YP_003403930.1| - 0.0004 20.6 0.9 0.029 14.6 0.0 3.1 3 0 0 3 3 3 1 Winged helix DNA-binding domain GntR PF00392.16 gi|284165651|ref|YP_003403930.1| - 0.001 18.4 0.1 0.8 9.1 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory proteins, gntR family RP-C PF03428.8 gi|284165651|ref|YP_003403930.1| - 0.0015 18.0 0.1 0.95 8.8 0.0 2.3 2 0 0 2 2 2 2 Replication protein C N-terminal domain HTH_11 PF08279.7 gi|284165651|ref|YP_003403930.1| - 0.0017 17.9 0.2 0.36 10.4 0.0 2.6 2 1 0 2 2 2 1 HTH domain HTH_12 PF08461.5 gi|284165651|ref|YP_003403930.1| - 0.0021 17.7 0.0 0.95 9.2 0.0 2.4 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain HTH_23 PF13384.1 gi|284165651|ref|YP_003403930.1| - 0.017 14.7 0.0 8 6.2 0.0 2.5 2 0 0 2 2 2 0 Homeodomain-like domain DUF2250 PF10007.4 gi|284165651|ref|YP_003403930.1| - 0.017 15.0 0.0 1.5 8.7 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_1 PF00126.22 gi|284165651|ref|YP_003403930.1| - 0.02 14.6 0.0 1.3 8.8 0.0 2.8 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_34 PF13601.1 gi|284165651|ref|YP_003403930.1| - 0.032 14.2 0.0 0.32 11.0 0.0 2.2 2 0 0 2 2 2 0 Winged helix DNA-binding domain LexA_DNA_bind PF01726.11 gi|284165651|ref|YP_003403930.1| - 0.044 13.3 0.1 0.51 9.9 0.0 2.4 2 0 0 2 2 2 0 LexA DNA binding domain HTH_DeoR PF08220.7 gi|284165651|ref|YP_003403930.1| - 0.049 13.1 0.0 4.1 7.0 0.0 2.6 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|284165651|ref|YP_003403930.1| - 0.07 12.9 0.0 3.9 7.3 0.0 2.4 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain B-block_TFIIIC PF04182.7 gi|284165651|ref|YP_003403930.1| - 0.073 12.9 0.0 1.2 8.9 0.0 2.2 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC HTH_29 PF13551.1 gi|284165651|ref|YP_003403930.1| - 0.074 13.2 0.2 16 5.7 0.0 2.7 2 1 1 3 3 2 0 Winged helix-turn helix MerR_1 PF13411.1 gi|284165651|ref|YP_003403930.1| - 0.1 12.3 0.0 0.27 11.0 0.0 1.6 1 0 0 1 1 1 0 MerR HTH family regulatory protein FUR PF01475.14 gi|284165651|ref|YP_003403930.1| - 0.14 12.0 0.0 0.39 10.6 0.0 1.7 2 0 0 2 2 2 0 Ferric uptake regulator family MutS_V PF00488.16 gi|284165652|ref|YP_003403931.1| - 8.6e-94 313.3 0.0 1.2e-93 312.8 0.0 1.2 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.13 gi|284165652|ref|YP_003403931.1| - 1.3e-46 158.9 3.6 4.2e-45 154.0 1.5 2.3 2 0 0 2 2 2 1 MutS domain III MutS_I PF01624.15 gi|284165652|ref|YP_003403931.1| - 2.6e-36 124.0 0.0 6.3e-36 122.8 0.0 1.7 1 0 0 1 1 1 1 MutS domain I MutS_IV PF05190.13 gi|284165652|ref|YP_003403931.1| - 4.1e-30 103.8 0.0 1.1e-29 102.3 0.0 1.8 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.12 gi|284165652|ref|YP_003403931.1| - 2.2e-12 47.1 0.0 2.3e-11 43.8 0.0 2.5 3 0 0 3 3 3 1 MutS domain II AAA_23 PF13476.1 gi|284165652|ref|YP_003403931.1| - 0.0085 16.4 0.1 0.59 10.4 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|284165652|ref|YP_003403931.1| - 0.018 14.9 0.0 0.073 12.9 0.0 2.0 2 1 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|284165652|ref|YP_003403931.1| - 0.055 13.0 0.0 0.13 11.8 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|284165652|ref|YP_003403931.1| - 2.1 9.1 0.0 2.1 9.1 0.0 4.0 2 1 0 2 2 2 0 AAA domain Acetyltransf_1 PF00583.19 gi|284165653|ref|YP_003403932.1| - 1.3e-19 69.9 0.1 1.9e-19 69.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.5 gi|284165653|ref|YP_003403932.1| - 5.8e-12 45.2 0.0 7.9e-12 44.7 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.1 gi|284165653|ref|YP_003403932.1| - 4.7e-11 42.6 0.0 1.1e-10 41.5 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|284165653|ref|YP_003403932.1| - 8.8e-09 35.2 0.3 9.3e-08 31.9 0.2 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|284165653|ref|YP_003403932.1| - 1.6e-08 34.6 0.0 2.4e-08 34.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|284165653|ref|YP_003403932.1| - 4.2e-07 30.2 0.0 5.3e-07 29.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|284165653|ref|YP_003403932.1| - 4.2e-06 26.7 0.0 5.8e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|284165653|ref|YP_003403932.1| - 3.3e-05 23.7 0.1 4.1e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|284165653|ref|YP_003403932.1| - 0.035 13.9 0.0 0.058 13.2 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase GNAT_acetyltr_2 PF13718.1 gi|284165653|ref|YP_003403932.1| - 0.11 11.7 0.1 0.14 11.4 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase 2 HR_lesion PF05514.6 gi|284165654|ref|YP_003403933.1| - 3.9e-07 29.9 0.0 3.8e-06 26.7 0.0 2.0 1 1 1 2 2 2 1 HR-like lesion-inducing DoxX PF07681.7 gi|284165654|ref|YP_003403933.1| - 0.00042 20.6 2.1 0.0012 19.2 0.8 1.8 2 0 0 2 2 2 1 DoxX PBP PF01161.15 gi|284165655|ref|YP_003403934.1| - 1.8e-29 102.4 0.1 2.1e-29 102.2 0.1 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein Lactamase_B PF00753.22 gi|284165656|ref|YP_003403935.1| - 7.7e-21 74.6 10.4 1.1e-20 74.1 7.2 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|284165656|ref|YP_003403935.1| - 9.1e-05 22.0 0.1 9.6e-05 22.0 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Cys_Met_Meta_PP PF01053.15 gi|284165658|ref|YP_003403937.1| - 3.7e-153 509.3 0.0 4.2e-153 509.2 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|284165658|ref|YP_003403937.1| - 0.00018 20.3 0.0 0.00028 19.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Met_gamma_lyase PF06838.6 gi|284165658|ref|YP_003403937.1| - 0.0023 16.3 0.0 0.0035 15.7 0.0 1.2 1 0 0 1 1 1 1 Methionine gamma-lyase DegT_DnrJ_EryC1 PF01041.12 gi|284165658|ref|YP_003403937.1| - 0.069 12.1 0.3 0.28 10.1 0.2 1.9 1 1 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family HTH_10 PF04967.7 gi|284165659|ref|YP_003403938.1| - 2.1e-14 52.8 0.0 3.7e-14 52.0 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|284165659|ref|YP_003403938.1| - 0.0011 18.1 0.1 0.0031 16.8 0.0 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.7 gi|284165659|ref|YP_003403938.1| - 0.0018 17.6 0.1 0.031 13.7 0.1 2.3 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|284165659|ref|YP_003403938.1| - 0.02 14.2 0.0 0.037 13.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Ribosomal_L21e PF01157.13 gi|284165660|ref|YP_003403939.1| - 1.6e-33 114.4 0.1 1.9e-33 114.2 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e Myosin_N PF02736.14 gi|284165660|ref|YP_003403939.1| - 0.023 14.3 1.0 0.076 12.7 0.3 1.9 2 0 0 2 2 2 0 Myosin N-terminal SH3-like domain RNA_pol_Rpb4 PF03874.11 gi|284165661|ref|YP_003403940.1| - 6.6e-14 51.9 1.0 7.5e-14 51.7 0.7 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb4 CLU_N PF15044.1 gi|284165661|ref|YP_003403940.1| - 0.053 13.6 0.2 0.71 10.0 0.1 2.3 2 1 0 2 2 2 0 Mitochondrial function, CLU-N-term DUF655 PF04919.7 gi|284165662|ref|YP_003403941.1| - 1.4e-63 213.8 0.2 1.6e-63 213.6 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_3 PF12836.2 gi|284165662|ref|YP_003403941.1| - 4.2e-05 23.3 0.0 7.9e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_6 PF14579.1 gi|284165662|ref|YP_003403941.1| - 0.00072 19.5 0.0 0.0011 18.9 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.18 gi|284165662|ref|YP_003403941.1| - 0.033 13.8 0.0 0.11 12.2 0.0 1.9 2 0 0 2 2 2 0 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|284165662|ref|YP_003403941.1| - 0.047 13.8 0.2 0.31 11.2 0.0 2.0 1 1 1 2 2 2 0 Helix-hairpin-helix domain RrnaAD PF00398.15 gi|284165664|ref|YP_003403943.1| - 8.1e-50 169.2 0.0 9.3e-50 169.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|284165664|ref|YP_003403943.1| - 1.1e-09 38.3 0.9 5.7e-09 36.0 0.6 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|284165664|ref|YP_003403943.1| - 1.8e-07 31.7 0.2 1.2e-06 29.0 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|284165664|ref|YP_003403943.1| - 9.6e-06 25.2 0.1 4.4e-05 23.1 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|284165664|ref|YP_003403943.1| - 2.8e-05 24.4 0.1 0.0021 18.4 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain PCMT PF01135.14 gi|284165664|ref|YP_003403943.1| - 0.00027 20.5 0.1 0.00058 19.4 0.0 1.5 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|284165664|ref|YP_003403943.1| - 0.00082 18.7 0.0 0.0015 17.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.1 gi|284165664|ref|YP_003403943.1| - 0.0013 19.0 0.0 0.0086 16.4 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Spermine_synth PF01564.12 gi|284165664|ref|YP_003403943.1| - 0.0077 15.1 0.1 0.011 14.6 0.1 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase TrkA_N PF02254.13 gi|284165664|ref|YP_003403943.1| - 0.053 13.5 0.3 0.19 11.7 0.0 1.9 2 0 0 2 2 2 0 TrkA-N domain Methyltransf_3 PF01596.12 gi|284165664|ref|YP_003403943.1| - 0.093 11.7 0.0 0.14 11.1 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase MS_channel PF00924.13 gi|284165665|ref|YP_003403944.1| - 1.6e-49 168.0 0.6 1.6e-49 168.0 0.4 1.6 2 0 0 2 2 2 1 Mechanosensitive ion channel Methyltransf_26 PF13659.1 gi|284165666|ref|YP_003403945.1| - 1.1e-14 54.3 0.2 1.8e-14 53.7 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|284165666|ref|YP_003403945.1| - 6.7e-09 35.3 0.0 9.4e-09 34.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.7 gi|284165666|ref|YP_003403945.1| - 8.2e-07 29.4 0.0 0.00013 22.4 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|284165666|ref|YP_003403945.1| - 0.00022 21.7 0.0 0.00034 21.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|284165666|ref|YP_003403945.1| - 0.0017 18.0 0.0 0.0041 16.7 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|284165666|ref|YP_003403945.1| - 0.0017 18.6 0.0 0.0046 17.2 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|284165666|ref|YP_003403945.1| - 0.0022 17.7 0.0 0.0061 16.2 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|284165666|ref|YP_003403945.1| - 0.0026 17.3 0.0 0.0035 16.9 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.8 gi|284165666|ref|YP_003403945.1| - 0.011 14.9 0.6 0.019 14.1 0.4 1.4 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.1 gi|284165666|ref|YP_003403945.1| - 0.011 15.4 0.0 0.016 14.8 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.7 gi|284165666|ref|YP_003403945.1| - 0.024 15.1 0.0 0.15 12.5 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_2 PF00891.13 gi|284165666|ref|YP_003403945.1| - 0.038 13.1 0.5 0.27 10.3 0.1 2.0 2 0 0 2 2 2 0 O-methyltransferase DUF1269 PF06897.7 gi|284165666|ref|YP_003403945.1| - 0.04 13.9 0.0 0.16 11.9 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1269) Met_10 PF02475.11 gi|284165666|ref|YP_003403945.1| - 0.11 12.0 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein UPF0146 PF03686.8 gi|284165666|ref|YP_003403945.1| - 0.14 11.9 0.1 0.24 11.2 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) Meth_synt_1 PF08267.7 gi|284165667|ref|YP_003403946.1| - 1.7e-24 86.6 0.0 6.5e-21 74.9 0.0 2.1 1 1 1 2 2 2 2 Cobalamin-independent synthase, N-terminal domain Meth_synt_2 PF01717.13 gi|284165667|ref|YP_003403946.1| - 2.8e-14 52.8 0.0 3.6e-14 52.4 0.0 1.1 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_2 PF01717.13 gi|284165668|ref|YP_003403947.1| - 3.7e-83 279.1 0.0 4.3e-83 278.9 0.0 1.0 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.7 gi|284165668|ref|YP_003403947.1| - 9.3e-22 77.6 0.2 6.1e-20 71.6 0.0 2.0 2 0 0 2 2 2 2 Cobalamin-independent synthase, N-terminal domain Nitroreductase PF00881.19 gi|284165669|ref|YP_003403948.1| - 1.1e-24 87.0 0.0 1.4e-24 86.7 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family Glyco_hydro_3 PF00933.16 gi|284165671|ref|YP_003403950.1| - 4.9e-66 222.7 0.0 6.4e-66 222.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.17 gi|284165671|ref|YP_003403950.1| - 2.6e-37 128.5 0.0 3.9e-37 127.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.1 gi|284165671|ref|YP_003403950.1| - 9.6e-15 54.2 0.1 3e-14 52.7 0.0 1.9 2 0 0 2 2 2 1 Fibronectin type III-like domain TAT_signal PF10518.4 gi|284165671|ref|YP_003403950.1| - 0.001 18.8 8.0 0.0031 17.3 5.5 1.9 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|284165671|ref|YP_003403950.1| - 0.081 12.1 1.4 0.19 10.9 1.0 1.6 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal GFO_IDH_MocA PF01408.17 gi|284165672|ref|YP_003403951.1| - 5e-18 65.7 0.0 8.1e-18 65.0 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|284165672|ref|YP_003403951.1| - 5.9e-14 51.8 0.5 2.8e-13 49.6 0.3 2.1 1 1 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain ox_reductase_C PF08635.5 gi|284165672|ref|YP_003403951.1| - 0.0089 15.4 0.0 0.016 14.6 0.0 1.4 1 0 0 1 1 1 1 Putative oxidoreductase C terminal ADH_zinc_N_2 PF13602.1 gi|284165674|ref|YP_003403953.1| - 5.3e-24 85.5 0.6 5.3e-24 85.5 0.4 2.1 2 1 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N PF00107.21 gi|284165674|ref|YP_003403953.1| - 1.4e-23 82.8 0.3 3e-23 81.8 0.2 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|284165674|ref|YP_003403953.1| - 3.8e-07 29.8 0.1 9.6e-07 28.5 0.0 1.7 1 1 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain Creatininase PF02633.9 gi|284165675|ref|YP_003403954.1| - 1.7e-62 210.6 2.6 1.9e-62 210.4 1.8 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase Methyltransf_11 PF08241.7 gi|284165676|ref|YP_003403955.1| - 1.2e-25 89.7 0.0 1.9e-25 89.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|284165676|ref|YP_003403955.1| - 1.1e-21 77.0 0.0 1.4e-21 76.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|284165676|ref|YP_003403955.1| - 4.5e-20 71.9 0.0 6e-20 71.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|284165676|ref|YP_003403955.1| - 3.4e-17 62.3 0.0 4.1e-17 62.0 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|284165676|ref|YP_003403955.1| - 2.6e-16 60.2 0.0 4.8e-16 59.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|284165676|ref|YP_003403955.1| - 2.2e-13 50.2 0.2 8e-13 48.4 0.1 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|284165676|ref|YP_003403955.1| - 3.7e-12 46.4 0.0 7.3e-12 45.5 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|284165676|ref|YP_003403955.1| - 1.5e-11 44.6 0.0 2.4e-11 43.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|284165676|ref|YP_003403955.1| - 5.2e-06 25.7 0.0 6.5e-06 25.4 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB MTS PF05175.9 gi|284165676|ref|YP_003403955.1| - 8.8e-06 25.1 0.0 1.3e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain UPF0020 PF01170.13 gi|284165676|ref|YP_003403955.1| - 0.00093 18.8 0.0 0.0013 18.3 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 MetW PF07021.7 gi|284165676|ref|YP_003403955.1| - 0.0011 18.4 0.0 0.0016 17.8 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PrmA PF06325.8 gi|284165676|ref|YP_003403955.1| - 0.0016 17.6 0.0 0.002 17.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.1 gi|284165676|ref|YP_003403955.1| - 0.0021 17.7 0.0 0.0036 16.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.7 gi|284165676|ref|YP_003403955.1| - 0.0098 14.7 0.0 0.013 14.4 0.0 1.1 1 0 0 1 1 1 1 DREV methyltransferase TPMT PF05724.6 gi|284165676|ref|YP_003403955.1| - 0.011 15.2 0.0 0.018 14.4 0.0 1.3 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) NodS PF05401.6 gi|284165676|ref|YP_003403955.1| - 0.016 14.5 0.0 0.019 14.3 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) PCMT PF01135.14 gi|284165676|ref|YP_003403955.1| - 0.023 14.2 0.0 0.036 13.6 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_8 PF05148.10 gi|284165676|ref|YP_003403955.1| - 0.055 13.0 0.0 0.38 10.3 0.0 1.9 1 1 0 1 1 1 0 Hypothetical methyltransferase AdoMet_MTase PF07757.8 gi|284165676|ref|YP_003403955.1| - 0.074 13.1 0.0 0.13 12.4 0.0 1.4 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase CMAS PF02353.15 gi|284165676|ref|YP_003403955.1| - 0.092 11.8 0.0 0.13 11.2 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_29 PF03141.11 gi|284165676|ref|YP_003403955.1| - 0.1 10.9 0.0 0.14 10.5 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase FmrO PF07091.6 gi|284165676|ref|YP_003403955.1| - 0.12 11.3 0.0 0.16 10.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) RrnaAD PF00398.15 gi|284165676|ref|YP_003403955.1| - 0.18 10.7 0.0 0.26 10.2 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase SBP_bac_5 PF00496.17 gi|284165677|ref|YP_003403956.1| - 1e-78 264.7 0.0 1.3e-78 264.4 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|284165677|ref|YP_003403956.1| - 5.3 7.3 6.2 0.54 10.4 1.1 1.9 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence ABC_tran PF00005.22 gi|284165678|ref|YP_003403957.1| - 5.1e-66 221.1 0.0 4.8e-36 124.0 0.0 2.2 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.7 gi|284165678|ref|YP_003403957.1| - 2.5e-33 114.2 6.3 9.8e-17 61.0 0.5 2.7 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|284165678|ref|YP_003403957.1| - 4.3e-20 72.8 0.0 4.3e-07 30.1 0.0 3.8 4 0 0 4 4 4 3 AAA domain AAA_22 PF13401.1 gi|284165678|ref|YP_003403957.1| - 1.4e-10 41.4 1.6 0.0023 18.0 0.2 4.0 2 2 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|284165678|ref|YP_003403957.1| - 4.9e-09 35.7 0.2 0.00079 18.7 0.0 3.4 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|284165678|ref|YP_003403957.1| - 6.4e-08 32.8 9.3 0.00086 19.3 0.8 2.9 2 1 0 2 2 2 2 AAA ATPase domain AAA_10 PF12846.2 gi|284165678|ref|YP_003403957.1| - 3.5e-06 26.6 0.4 3.3 7.0 0.0 4.1 4 0 0 4 4 4 2 AAA-like domain AAA_25 PF13481.1 gi|284165678|ref|YP_003403957.1| - 7.2e-06 25.5 0.7 0.15 11.4 0.0 4.0 4 0 0 4 4 4 1 AAA domain NB-ARC PF00931.17 gi|284165678|ref|YP_003403957.1| - 1.4e-05 24.1 0.1 0.081 11.7 0.0 2.6 3 0 0 3 3 3 2 NB-ARC domain AAA PF00004.24 gi|284165678|ref|YP_003403957.1| - 2.3e-05 24.5 0.2 0.24 11.5 0.1 3.6 3 1 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|284165678|ref|YP_003403957.1| - 9.5e-05 21.8 0.2 0.19 11.2 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain NACHT PF05729.7 gi|284165678|ref|YP_003403957.1| - 0.00016 21.3 0.1 0.2 11.2 0.0 2.5 2 0 0 2 2 2 2 NACHT domain DUF258 PF03193.11 gi|284165678|ref|YP_003403957.1| - 0.00019 20.6 0.2 0.037 13.2 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_5 PF07728.9 gi|284165678|ref|YP_003403957.1| - 0.00021 20.9 0.9 0.33 10.6 0.1 3.1 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|284165678|ref|YP_003403957.1| - 0.00097 18.6 0.6 1.4 8.3 0.0 2.7 3 0 0 3 3 3 2 Sigma-54 interaction domain AAA_18 PF13238.1 gi|284165678|ref|YP_003403957.1| - 0.0011 19.2 0.2 0.58 10.4 0.1 3.1 3 0 0 3 3 3 1 AAA domain Sigma54_activ_2 PF14532.1 gi|284165678|ref|YP_003403957.1| - 0.0012 18.9 0.1 0.54 10.3 0.0 3.2 3 0 0 3 3 3 1 Sigma-54 interaction domain RNA_helicase PF00910.17 gi|284165678|ref|YP_003403957.1| - 0.0013 18.8 0.3 1.2 9.3 0.0 2.3 2 0 0 2 2 2 1 RNA helicase AAA_17 PF13207.1 gi|284165678|ref|YP_003403957.1| - 0.0016 19.2 0.1 0.51 11.1 0.1 2.7 2 0 0 2 2 2 1 AAA domain ATP-synt_ab PF00006.20 gi|284165678|ref|YP_003403957.1| - 0.0018 17.7 0.0 1.5 8.3 0.0 2.4 2 0 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain PRK PF00485.13 gi|284165678|ref|YP_003403957.1| - 0.0029 17.2 0.4 2.3 7.7 0.0 2.2 2 0 0 2 2 2 2 Phosphoribulokinase / Uridine kinase family CoaE PF01121.15 gi|284165678|ref|YP_003403957.1| - 0.0036 16.7 0.1 1.3 8.4 0.0 2.3 2 0 0 2 2 2 1 Dephospho-CoA kinase DUF3265 PF11665.3 gi|284165678|ref|YP_003403957.1| - 0.0037 17.0 4.2 1.1 9.1 0.1 2.6 2 0 0 2 2 2 2 Protein of unknown function (DUF3265) AAA_33 PF13671.1 gi|284165678|ref|YP_003403957.1| - 0.0042 16.9 0.7 3 7.7 0.0 3.0 2 1 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.18 gi|284165678|ref|YP_003403957.1| - 0.0042 17.0 0.0 0.46 10.4 0.0 2.6 2 1 0 2 2 2 1 50S ribosome-binding GTPase SbcCD_C PF13558.1 gi|284165678|ref|YP_003403957.1| - 0.0053 16.6 0.8 0.46 10.4 0.1 3.2 2 2 0 2 2 2 1 Putative exonuclease SbcCD, C subunit Mg_chelatase PF01078.16 gi|284165678|ref|YP_003403957.1| - 0.0066 15.6 0.0 0.3 10.2 0.0 2.5 3 0 0 3 3 2 1 Magnesium chelatase, subunit ChlI Miro PF08477.8 gi|284165678|ref|YP_003403957.1| - 0.0098 16.3 0.0 1.3 9.5 0.0 2.4 2 0 0 2 2 2 1 Miro-like protein MobB PF03205.9 gi|284165678|ref|YP_003403957.1| - 0.017 14.8 0.4 6.2 6.5 0.0 2.5 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B UPF0079 PF02367.12 gi|284165678|ref|YP_003403957.1| - 0.022 14.3 0.2 5.2 6.7 0.0 2.3 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 IstB_IS21 PF01695.12 gi|284165678|ref|YP_003403957.1| - 0.036 13.4 0.2 11 5.4 0.0 2.9 3 0 0 3 3 2 0 IstB-like ATP binding protein DUF87 PF01935.12 gi|284165678|ref|YP_003403957.1| - 0.041 13.7 1.5 7.2 6.3 0.1 2.5 2 0 0 2 2 2 0 Domain of unknown function DUF87 Zeta_toxin PF06414.7 gi|284165678|ref|YP_003403957.1| - 0.049 12.7 0.3 9.7 5.2 0.2 2.3 2 0 0 2 2 2 0 Zeta toxin KaiC PF06745.8 gi|284165678|ref|YP_003403957.1| - 0.096 11.7 0.1 14 4.6 0.0 2.4 2 0 0 2 2 2 0 KaiC AAA_15 PF13175.1 gi|284165678|ref|YP_003403957.1| - 0.15 11.1 0.0 28 3.5 0.0 2.9 4 0 0 4 4 3 0 AAA ATPase domain AIG1 PF04548.11 gi|284165678|ref|YP_003403957.1| - 0.17 10.9 0.3 1.8 7.6 0.0 2.1 2 0 0 2 2 2 0 AIG1 family PduV-EutP PF10662.4 gi|284165678|ref|YP_003403957.1| - 0.29 10.6 0.5 1.7 8.1 0.1 2.2 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation ABC_ATPase PF09818.4 gi|284165678|ref|YP_003403957.1| - 0.29 9.6 0.8 5.2 5.5 0.0 3.0 2 2 0 2 2 2 0 Predicted ATPase of the ABC class BPD_transp_1 PF00528.17 gi|284165679|ref|YP_003403958.1| - 7.4e-32 110.3 7.6 1.2e-31 109.6 4.8 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|284165679|ref|YP_003403958.1| - 1.8e-05 24.0 0.0 5.5e-05 22.4 0.0 1.9 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C EpuA PF11772.3 gi|284165679|ref|YP_003403958.1| - 0.073 12.5 0.0 0.073 12.5 0.0 3.4 4 0 0 4 4 4 0 DNA-directed RNA polymerase subunit beta BPD_transp_1 PF00528.17 gi|284165680|ref|YP_003403959.1| - 4.7e-43 146.8 10.4 8e-43 146.1 7.2 1.4 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component HD PF01966.17 gi|284165682|ref|YP_003403961.1| - 1.1e-09 38.3 3.4 2.8e-09 37.0 2.3 1.8 1 0 0 1 1 1 1 HD domain Acetyltransf_6 PF13480.1 gi|284165683|ref|YP_003403962.1| - 2.6e-12 46.8 1.0 5.3e-12 45.9 0.7 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FemAB PF02388.11 gi|284165683|ref|YP_003403962.1| - 6.7e-09 34.9 1.2 2.9e-06 26.2 0.6 2.2 1 1 0 2 2 2 2 FemAB family DUF482 PF04339.7 gi|284165683|ref|YP_003403962.1| - 1.1e-08 34.3 0.0 0.00079 18.3 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function, DUF482 ADH_zinc_N PF00107.21 gi|284165684|ref|YP_003403963.1| - 4.3e-27 94.2 2.5 5.9e-27 93.7 0.2 2.2 3 0 0 3 3 3 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|284165684|ref|YP_003403963.1| - 1.5e-22 79.4 0.3 3.3e-22 78.3 0.2 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.1 gi|284165684|ref|YP_003403963.1| - 1.2e-16 61.7 0.5 2.7e-16 60.6 0.1 1.8 2 0 0 2 2 2 1 Zinc-binding dehydrogenase NADH_4Fe-4S PF10589.4 gi|284165684|ref|YP_003403963.1| - 0.13 11.4 3.6 0.37 9.9 2.5 1.7 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Epimerase PF01370.16 gi|284165685|ref|YP_003403964.1| - 2.3e-16 59.9 0.0 3.5e-16 59.3 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_4 PF07993.7 gi|284165685|ref|YP_003403964.1| - 4.4e-10 38.9 0.0 1.6e-09 37.0 0.0 1.8 1 1 1 2 2 2 1 Male sterility protein NAD_binding_10 PF13460.1 gi|284165685|ref|YP_003403964.1| - 5.7e-09 36.2 0.1 1.2e-08 35.2 0.1 1.6 1 1 0 1 1 1 1 NADH(P)-binding 3Beta_HSD PF01073.14 gi|284165685|ref|YP_003403964.1| - 2.1e-07 29.9 0.0 3.8e-07 29.0 0.0 1.4 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|284165685|ref|YP_003403964.1| - 5.8e-07 28.6 0.1 4.3e-06 25.8 0.0 2.1 1 1 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|284165685|ref|YP_003403964.1| - 6.4e-07 28.5 0.2 3.1e-05 23.0 0.4 2.7 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein adh_short PF00106.20 gi|284165685|ref|YP_003403964.1| - 0.00011 22.1 0.2 0.02 14.7 0.0 2.9 2 1 1 3 3 3 1 short chain dehydrogenase DapB_N PF01113.15 gi|284165685|ref|YP_003403964.1| - 0.00095 19.0 0.0 0.0019 18.1 0.0 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus KR PF08659.5 gi|284165685|ref|YP_003403964.1| - 0.12 12.0 0.0 7.6 6.1 0.0 2.3 1 1 1 2 2 2 0 KR domain Mit_KHE1 PF10173.4 gi|284165686|ref|YP_003403965.1| - 0.03 14.1 0.6 0.036 13.9 0.4 1.1 1 0 0 1 1 1 0 Mitochondrial K+-H+ exchange-related DUF4349 PF14257.1 gi|284165686|ref|YP_003403965.1| - 0.092 11.9 0.8 0.098 11.8 0.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4349) GST_N_2 PF13409.1 gi|284165687|ref|YP_003403966.1| - 9.9e-22 76.7 0.0 1.8e-21 75.9 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.1 gi|284165687|ref|YP_003403966.1| - 2e-13 50.0 0.9 4.9e-13 48.7 0.6 1.6 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_3 PF14497.1 gi|284165687|ref|YP_003403966.1| - 6.2e-08 33.0 0.1 1.3e-07 32.0 0.0 1.6 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C PF00043.20 gi|284165687|ref|YP_003403966.1| - 1.7e-07 31.1 0.1 3.7e-07 30.0 0.0 1.6 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_3 PF13417.1 gi|284165687|ref|YP_003403966.1| - 1.2e-06 28.6 0.0 0.04 14.1 0.0 2.5 2 0 0 2 2 2 2 Glutathione S-transferase, N-terminal domain Na_Ca_ex PF01699.19 gi|284165688|ref|YP_003403967.1| - 7.9e-51 171.3 27.7 9e-28 96.6 7.1 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Na_H_antiporter PF03553.9 gi|284165689|ref|YP_003403968.1| - 7.4e-30 104.0 45.5 1.7e-15 56.8 18.8 2.9 2 1 0 2 2 2 2 Na+/H+ antiporter family MscS_TM PF12794.2 gi|284165689|ref|YP_003403968.1| - 0.013 14.0 0.1 0.013 14.0 0.1 3.7 4 1 0 4 4 4 0 Mechanosensitive ion channel inner membrane domain 1 NfeD PF01957.13 gi|284165690|ref|YP_003403969.1| - 0.0082 16.2 0.1 0.65 10.1 0.1 2.1 1 1 1 2 2 2 2 NfeD-like C-terminal, partner-binding TRAM PF01938.15 gi|284165690|ref|YP_003403969.1| - 0.009 15.7 0.3 0.015 15.0 0.2 1.5 1 1 0 1 1 1 1 TRAM domain S1 PF00575.18 gi|284165690|ref|YP_003403969.1| - 0.12 12.5 0.0 7.8 6.6 0.1 2.1 2 0 0 2 2 2 0 S1 RNA binding domain N6_N4_Mtase PF01555.13 gi|284165691|ref|YP_003403970.1| - 6.1e-14 52.0 0.0 1.6e-08 34.3 0.0 2.1 2 0 0 2 2 2 2 DNA methylase Methyltransf_26 PF13659.1 gi|284165691|ref|YP_003403970.1| - 2.3e-12 46.9 0.0 3.5e-12 46.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|284165691|ref|YP_003403970.1| - 0.0036 16.8 0.0 0.013 15.0 0.0 1.8 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 TrkA_N PF02254.13 gi|284165692|ref|YP_003403971.1| - 5.5e-26 90.8 0.8 1.2e-25 89.7 0.1 1.8 2 0 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.16 gi|284165692|ref|YP_003403971.1| - 2.2e-13 49.5 1.9 3.6e-13 48.8 0.1 2.0 2 0 0 2 2 2 1 TrkA-C domain UDPG_MGDP_dh_N PF03721.9 gi|284165692|ref|YP_003403971.1| - 2e-07 30.5 0.0 3.9e-07 29.6 0.0 1.5 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_10 PF13460.1 gi|284165692|ref|YP_003403971.1| - 2.5e-06 27.6 0.1 3.4e-06 27.1 0.1 1.3 1 0 0 1 1 1 1 NADH(P)-binding 3HCDH_N PF02737.13 gi|284165692|ref|YP_003403971.1| - 3.6e-05 23.4 0.1 5.8e-05 22.8 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|284165692|ref|YP_003403971.1| - 9.2e-05 22.6 0.1 0.00018 21.7 0.0 1.6 2 0 0 2 2 1 1 Putative NAD(P)-binding IlvN PF07991.7 gi|284165692|ref|YP_003403971.1| - 0.00015 21.1 0.0 0.00022 20.6 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain AlaDh_PNT_C PF01262.16 gi|284165692|ref|YP_003403971.1| - 0.00018 21.1 0.1 0.00028 20.5 0.0 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_2 PF03446.10 gi|284165692|ref|YP_003403971.1| - 0.00019 21.3 0.2 0.0019 18.0 0.0 2.3 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase XdhC_C PF13478.1 gi|284165692|ref|YP_003403971.1| - 0.00035 20.8 0.1 0.0016 18.7 0.0 1.9 2 0 0 2 2 2 1 XdhC Rossmann domain 2-Hacid_dh_C PF02826.14 gi|284165692|ref|YP_003403971.1| - 0.00042 19.5 0.0 0.00073 18.7 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|284165692|ref|YP_003403971.1| - 0.00065 18.7 0.2 0.00085 18.3 0.1 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase ApbA PF02558.11 gi|284165692|ref|YP_003403971.1| - 0.00071 19.0 0.0 0.0016 17.8 0.0 1.6 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA AdoHcyase_NAD PF00670.16 gi|284165692|ref|YP_003403971.1| - 0.0013 18.6 0.1 0.0017 18.2 0.1 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain F420_oxidored PF03807.12 gi|284165692|ref|YP_003403971.1| - 0.004 17.5 0.1 0.0098 16.3 0.0 1.7 2 0 0 2 2 1 1 NADP oxidoreductase coenzyme F420-dependent DAO PF01266.19 gi|284165692|ref|YP_003403971.1| - 0.0041 16.0 0.1 0.0057 15.5 0.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase GFO_IDH_MocA PF01408.17 gi|284165692|ref|YP_003403971.1| - 0.0058 17.1 0.1 0.0092 16.4 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold FAD_binding_3 PF01494.14 gi|284165692|ref|YP_003403971.1| - 0.015 14.3 0.0 0.023 13.7 0.0 1.4 1 0 0 1 1 1 0 FAD binding domain NmrA PF05368.8 gi|284165692|ref|YP_003403971.1| - 0.017 14.4 0.0 0.026 13.8 0.0 1.3 1 0 0 1 1 1 0 NmrA-like family Gp_dh_N PF00044.19 gi|284165692|ref|YP_003403971.1| - 0.03 14.2 0.1 0.091 12.7 0.0 1.7 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.16 gi|284165692|ref|YP_003403971.1| - 0.032 13.7 0.0 0.047 13.2 0.0 1.2 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CPSase_L_chain PF00289.17 gi|284165692|ref|YP_003403971.1| - 0.06 13.4 0.0 0.093 12.8 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|284165692|ref|YP_003403971.1| - 0.079 12.6 0.0 0.21 11.3 0.0 1.7 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DUF4147 PF13660.1 gi|284165693|ref|YP_003403972.1| - 8.6e-82 273.8 1.7 1.6e-81 272.9 1.2 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.8 gi|284165693|ref|YP_003403972.1| - 2.7e-29 101.4 2.4 7.1e-29 100.0 1.6 1.8 1 0 0 1 1 1 1 MOFRL family Xan_ur_permease PF00860.15 gi|284165694|ref|YP_003403973.1| - 2e-35 122.0 42.3 2.6e-35 121.6 29.3 1.2 1 0 0 1 1 1 1 Permease family GST_N_3 PF13417.1 gi|284165695|ref|YP_003403974.1| - 2.2e-14 53.3 0.0 2.6e-14 53.2 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.19 gi|284165695|ref|YP_003403974.1| - 3.1e-14 52.6 0.1 4.9e-14 52.0 0.0 1.3 2 0 0 2 2 2 1 Glutaredoxin GST_N_2 PF13409.1 gi|284165695|ref|YP_003403974.1| - 1.5e-09 37.7 0.0 1.7e-09 37.5 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.9 gi|284165695|ref|YP_003403974.1| - 0.007 16.5 0.1 0.0076 16.4 0.0 1.3 1 1 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_2 PF13098.1 gi|284165695|ref|YP_003403974.1| - 0.0072 16.5 0.0 0.012 15.7 0.0 1.5 1 1 0 1 1 1 1 Thioredoxin-like domain GST_N PF02798.15 gi|284165695|ref|YP_003403974.1| - 0.015 15.4 0.0 0.018 15.2 0.0 1.1 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain HTH_3 PF01381.17 gi|284165697|ref|YP_003403976.1| - 2.8e-08 33.4 0.0 4.6e-08 32.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|284165697|ref|YP_003403976.1| - 2.5e-06 27.5 0.9 1.1e-05 25.4 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|284165697|ref|YP_003403976.1| - 3.4e-05 23.8 0.0 6.2e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|284165697|ref|YP_003403976.1| - 0.00026 20.5 0.0 0.00061 19.3 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.1 gi|284165697|ref|YP_003403976.1| - 0.0037 16.8 0.0 0.0098 15.5 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_25 PF13413.1 gi|284165697|ref|YP_003403976.1| - 0.0054 16.3 0.2 0.014 15.0 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|284165697|ref|YP_003403976.1| - 0.0059 15.8 0.0 0.014 14.6 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_28 PF13518.1 gi|284165697|ref|YP_003403976.1| - 0.0085 16.0 0.0 0.021 14.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_10 PF04967.7 gi|284165697|ref|YP_003403976.1| - 0.049 13.2 0.0 0.096 12.2 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain HTH_AraC PF00165.18 gi|284165697|ref|YP_003403976.1| - 0.057 13.2 0.0 0.13 12.1 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family NUMOD1 PF07453.8 gi|284165697|ref|YP_003403976.1| - 0.11 12.3 0.0 0.22 11.4 0.0 1.5 1 0 0 1 1 1 0 NUMOD1 domain DUF1743 PF08489.6 gi|284165698|ref|YP_003403977.1| - 6.1e-35 119.5 0.0 1e-34 118.7 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) OrfB_Zn_ribbon PF07282.6 gi|284165698|ref|YP_003403977.1| - 0.01 15.4 0.7 0.023 14.3 0.5 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DUF4131 PF13567.1 gi|284165698|ref|YP_003403977.1| - 0.021 14.2 0.0 0.045 13.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) C1_1 PF00130.17 gi|284165698|ref|YP_003403977.1| - 0.076 12.7 0.1 0.14 11.8 0.1 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc-ribbons_6 PF07191.7 gi|284165698|ref|YP_003403977.1| - 0.083 12.6 0.5 0.18 11.6 0.4 1.5 1 0 0 1 1 1 0 zinc-ribbons Rnk_N PF14760.1 gi|284165698|ref|YP_003403977.1| - 0.11 12.5 0.1 0.11 12.5 0.1 2.1 2 0 0 2 2 2 0 Rnk N-terminus Zn_Tnp_IS1595 PF12760.2 gi|284165698|ref|YP_003403977.1| - 0.14 12.0 1.7 0.35 10.7 1.1 1.7 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|284165698|ref|YP_003403977.1| - 0.68 9.9 3.2 24 4.9 0.3 2.8 2 0 0 2 2 2 0 Zinc ribbon domain SBF PF01758.11 gi|284165699|ref|YP_003403978.1| - 8.4e-27 93.7 11.5 8.4e-27 93.7 8.0 1.7 2 0 0 2 2 2 1 Sodium Bile acid symporter family MMR_HSR1 PF01926.18 gi|284165701|ref|YP_003403980.1| - 2.8e-19 69.1 0.0 7.4e-19 67.8 0.0 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|284165701|ref|YP_003403980.1| - 2e-14 53.1 1.7 6.4e-11 41.7 0.0 2.2 2 0 0 2 2 2 2 Ferrous iron transport protein B TGS PF02824.16 gi|284165701|ref|YP_003403980.1| - 1.1e-12 47.6 0.0 1.9e-12 46.8 0.0 1.4 1 0 0 1 1 1 1 TGS domain Miro PF08477.8 gi|284165701|ref|YP_003403980.1| - 0.00026 21.4 0.0 0.0046 17.4 0.0 2.4 1 1 1 2 2 2 1 Miro-like protein Dynamin_N PF00350.18 gi|284165701|ref|YP_003403980.1| - 0.00065 19.5 0.3 0.37 10.6 0.1 2.7 1 1 0 2 2 2 2 Dynamin family ArgK PF03308.11 gi|284165701|ref|YP_003403980.1| - 0.002 16.9 1.8 0.46 9.2 0.0 3.1 3 1 0 3 3 3 2 ArgK protein GTP_EFTU PF00009.22 gi|284165701|ref|YP_003403980.1| - 0.0022 17.4 0.0 0.015 14.7 0.0 2.2 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain AIG1 PF04548.11 gi|284165701|ref|YP_003403980.1| - 0.0025 16.9 0.0 0.0052 15.9 0.0 1.5 1 0 0 1 1 1 1 AIG1 family ABC_tran PF00005.22 gi|284165701|ref|YP_003403980.1| - 0.0059 16.9 0.1 0.13 12.5 0.0 2.3 2 0 0 2 2 2 1 ABC transporter DUF258 PF03193.11 gi|284165701|ref|YP_003403980.1| - 0.012 14.7 0.7 0.1 11.7 0.1 2.6 2 2 1 3 3 3 0 Protein of unknown function, DUF258 CUE PF02845.11 gi|284165701|ref|YP_003403980.1| - 0.016 14.7 0.1 0.056 12.9 0.1 2.1 2 0 0 2 2 2 0 CUE domain ThiS PF02597.15 gi|284165701|ref|YP_003403980.1| - 0.024 15.0 0.3 0.37 11.2 0.0 2.9 2 1 0 2 2 2 0 ThiS family SLBB PF10531.4 gi|284165701|ref|YP_003403980.1| - 0.088 12.7 0.1 0.29 11.0 0.0 1.9 2 0 0 2 2 2 0 SLBB domain MFS_1 PF07690.11 gi|284165702|ref|YP_003403981.1| - 1.6e-36 125.7 47.0 1.6e-36 125.7 32.6 1.7 1 1 1 2 2 2 1 Major Facilitator Superfamily LacY_symp PF01306.14 gi|284165702|ref|YP_003403981.1| - 0.0065 15.0 2.4 0.0065 15.0 1.7 2.2 2 0 0 2 2 2 1 LacY proton/sugar symporter UNC-93 PF05978.11 gi|284165702|ref|YP_003403981.1| - 0.015 14.7 3.1 0.041 13.3 2.1 1.8 1 0 0 1 1 1 0 Ion channel regulatory protein UNC-93 DUF1228 PF06779.9 gi|284165702|ref|YP_003403981.1| - 0.5 10.4 13.2 0.046 13.7 2.4 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF1228) Na_H_antiporter PF03553.9 gi|284165703|ref|YP_003403982.1| - 4.1e-63 213.2 27.9 1.9e-62 211.0 15.1 3.2 1 1 1 2 2 2 2 Na+/H+ antiporter family Glyoxalase_2 PF12681.2 gi|284165704|ref|YP_003403983.1| - 3.8e-25 88.5 5.7 1.8e-15 57.4 0.2 2.1 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase PF00903.20 gi|284165704|ref|YP_003403983.1| - 1.7e-21 76.5 2.7 6.6e-13 48.7 0.1 2.1 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|284165704|ref|YP_003403983.1| - 3e-12 46.5 3.6 2.5e-06 27.4 0.1 4.1 2 2 2 4 4 4 4 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|284165704|ref|YP_003403983.1| - 0.00014 21.8 0.9 1.9 8.3 0.1 3.8 2 2 0 2 2 2 2 Glyoxalase-like domain zf-MYND PF01753.13 gi|284165705|ref|YP_003403984.1| - 0.0025 17.6 3.6 0.007 16.2 2.5 1.7 1 1 0 1 1 1 1 MYND finger Ecl1 PF12855.2 gi|284165705|ref|YP_003403984.1| - 0.024 13.8 1.3 0.069 12.4 0.9 1.7 1 1 0 1 1 1 0 Life-span regulatory factor DUF3330 PF11809.3 gi|284165705|ref|YP_003403984.1| - 0.026 14.3 0.1 0.034 14.0 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3330) DUF2256 PF10013.4 gi|284165705|ref|YP_003403984.1| - 0.54 10.0 5.4 2.9 7.7 3.7 2.0 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2256) Cdc6_C PF09079.6 gi|284165706|ref|YP_003403985.1| - 7.7e-15 54.3 0.0 1.7e-14 53.3 0.0 1.6 1 0 0 1 1 1 1 CDC6, C terminal AAA_16 PF13191.1 gi|284165706|ref|YP_003403985.1| - 1.8e-09 37.8 0.0 2.4e-08 34.1 0.0 2.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|284165706|ref|YP_003403985.1| - 7.5e-08 32.5 0.0 1.8e-07 31.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|284165706|ref|YP_003403985.1| - 0.00028 21.0 0.0 0.34 11.0 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|284165706|ref|YP_003403985.1| - 0.0013 18.4 0.1 0.0053 16.4 0.1 2.0 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|284165706|ref|YP_003403985.1| - 0.0035 16.8 0.0 0.26 10.7 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_2 PF07724.9 gi|284165706|ref|YP_003403985.1| - 0.03 14.2 0.0 0.055 13.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) PCP_red PF08369.5 gi|284165706|ref|YP_003403985.1| - 0.059 13.2 0.0 0.16 11.8 0.0 1.7 1 0 0 1 1 1 0 Proto-chlorophyllide reductase 57 kD subunit AAA_17 PF13207.1 gi|284165706|ref|YP_003403985.1| - 0.073 13.8 0.3 0.18 12.6 0.1 1.8 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|284165706|ref|YP_003403985.1| - 0.096 12.3 0.0 0.19 11.3 0.0 1.5 1 1 0 1 1 1 0 Archaeal ATPase zf-ribbon_3 PF13248.1 gi|284165707|ref|YP_003403986.1| - 0.02 14.1 2.6 2.1 7.6 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-LITAF-like PF10601.4 gi|284165707|ref|YP_003403986.1| - 0.059 13.2 0.6 0.71 9.7 0.0 2.0 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|284165707|ref|YP_003403986.1| - 0.13 11.5 1.1 3.9 6.8 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding MttA_Hcf106 PF02416.11 gi|284165708|ref|YP_003403987.1| - 7.7e-15 53.7 0.1 8.6e-15 53.5 0.0 1.1 1 0 0 1 1 1 1 mttA/Hcf106 family ExoD PF06055.7 gi|284165708|ref|YP_003403987.1| - 0.31 10.1 1.7 0.42 9.6 1.1 1.2 1 0 0 1 1 1 0 Exopolysaccharide synthesis, ExoD Fst_toxin PF13955.1 gi|284165708|ref|YP_003403987.1| - 0.66 9.7 4.3 7.6 6.3 1.9 2.1 2 0 0 2 2 2 0 Toxin Fst, type I toxin-antitoxin system Pyr_redox_2 PF07992.9 gi|284165709|ref|YP_003403988.1| - 1.6e-24 86.9 0.0 3.4e-24 85.8 0.0 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Glutaredoxin PF00462.19 gi|284165709|ref|YP_003403988.1| - 1.2e-18 66.8 0.1 3.9e-18 65.1 0.1 2.0 1 0 0 1 1 1 1 Glutaredoxin Pyr_redox PF00070.22 gi|284165709|ref|YP_003403988.1| - 8.6e-14 51.7 2.7 5.2e-13 49.2 0.3 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|284165709|ref|YP_003403988.1| - 4.7e-13 49.6 0.0 5.5e-11 42.9 0.0 2.7 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|284165709|ref|YP_003403988.1| - 7e-06 25.1 1.1 0.0091 14.9 0.0 2.5 2 1 0 2 2 2 2 FAD dependent oxidoreductase DUF836 PF05768.9 gi|284165709|ref|YP_003403988.1| - 0.00028 21.0 0.1 0.00074 19.7 0.0 1.7 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) HI0933_like PF03486.9 gi|284165709|ref|YP_003403988.1| - 0.00056 18.5 0.7 0.57 8.5 0.0 2.9 4 0 0 4 4 4 2 HI0933-like protein NAD_binding_8 PF13450.1 gi|284165709|ref|YP_003403988.1| - 0.00096 19.1 0.4 0.0078 16.2 0.0 2.6 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|284165709|ref|YP_003403988.1| - 0.0034 16.2 5.0 0.016 14.0 0.0 3.2 2 1 2 4 4 4 1 FAD binding domain NAD_binding_7 PF13241.1 gi|284165709|ref|YP_003403988.1| - 0.004 17.3 0.1 0.058 13.6 0.0 2.7 2 1 1 3 3 3 1 Putative NAD(P)-binding GST_N_3 PF13417.1 gi|284165709|ref|YP_003403988.1| - 0.02 15.0 0.0 0.036 14.2 0.0 1.4 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain SH3BGR PF04908.10 gi|284165709|ref|YP_003403988.1| - 0.039 13.8 0.7 0.075 12.9 0.0 1.8 2 0 0 2 2 2 0 SH3-binding, glutamic acid-rich protein Thioredoxin_2 PF13098.1 gi|284165709|ref|YP_003403988.1| - 0.099 12.8 0.0 0.42 10.8 0.0 2.0 2 0 0 2 2 2 0 Thioredoxin-like domain Thioredoxin_3 PF13192.1 gi|284165709|ref|YP_003403988.1| - 0.12 12.2 0.1 1.1 9.1 0.0 2.5 2 0 0 2 2 2 0 Thioredoxin domain Lycopene_cycl PF05834.7 gi|284165709|ref|YP_003403988.1| - 0.15 10.9 0.1 4.9 5.9 0.0 2.6 3 0 0 3 3 3 0 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|284165709|ref|YP_003403988.1| - 0.22 10.1 1.9 12 4.3 0.0 2.7 3 0 0 3 3 3 0 Tryptophan halogenase DUF389 PF04087.9 gi|284165710|ref|YP_003403989.1| - 1.7e-26 92.8 25.1 1.7e-26 92.8 17.4 2.1 3 0 0 3 3 3 1 Domain of unknown function (DUF389) TraD PF06412.6 gi|284165710|ref|YP_003403989.1| - 6.6 6.4 6.0 30 4.2 0.4 3.3 2 1 1 3 3 3 0 Conjugal transfer protein TraD DUF357 PF04010.8 gi|284165711|ref|YP_003403990.1| - 1.3e-29 101.7 0.3 1.5e-29 101.5 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF357) TFIIB PF00382.14 gi|284165712|ref|YP_003403991.1| - 3.6e-41 138.8 0.3 1.2e-21 76.2 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|284165712|ref|YP_003403991.1| - 2.2e-16 58.8 3.5 8.1e-16 57.0 2.7 1.8 2 0 0 2 2 2 1 TFIIB zinc-binding Cyclin_C PF02984.14 gi|284165712|ref|YP_003403991.1| - 4.2e-05 23.4 0.0 0.0011 18.8 0.0 2.3 2 0 0 2 2 2 1 Cyclin, C-terminal domain UreF PF01730.11 gi|284165712|ref|YP_003403991.1| - 0.019 15.0 1.7 4.6 7.3 0.0 2.8 3 0 0 3 3 3 0 UreF DZR PF12773.2 gi|284165712|ref|YP_003403991.1| - 0.021 14.6 0.9 0.038 13.8 0.6 1.4 1 0 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|284165712|ref|YP_003403991.1| - 0.025 14.2 1.2 0.048 13.3 0.6 1.6 2 0 0 2 2 2 0 Putative transposase DNA-binding domain A2L_zn_ribbon PF08792.5 gi|284165712|ref|YP_003403991.1| - 0.035 13.5 0.4 0.059 12.8 0.3 1.4 1 0 0 1 1 1 0 A2L zinc ribbon domain HTH_24 PF13412.1 gi|284165712|ref|YP_003403991.1| - 0.068 12.5 0.1 0.15 11.4 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Prok-RING_1 PF14446.1 gi|284165712|ref|YP_003403991.1| - 0.19 11.4 1.8 0.32 10.7 1.2 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Sigma70_r4 PF04545.11 gi|284165712|ref|YP_003403991.1| - 0.38 10.0 3.5 1.3 8.3 0.0 3.2 4 0 0 4 4 4 0 Sigma-70, region 4 zf-ribbon_3 PF13248.1 gi|284165712|ref|YP_003403991.1| - 0.62 9.3 3.1 1.2 8.4 2.1 1.6 1 1 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|284165712|ref|YP_003403991.1| - 3.6 7.6 6.1 6.5 6.7 0.5 2.4 1 1 1 2 2 2 0 Zinc ribbon domain Lar_restr_allev PF14354.1 gi|284165712|ref|YP_003403991.1| - 3.7 7.9 6.0 0.54 10.6 1.2 1.9 2 0 0 2 2 2 0 Restriction alleviation protein Lar zinc_ribbon_4 PF13717.1 gi|284165713|ref|YP_003403992.1| - 0.0011 18.5 0.2 0.0023 17.5 0.2 1.5 1 1 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|284165713|ref|YP_003403992.1| - 0.0016 17.9 0.2 0.0039 16.7 0.2 1.6 1 1 1 2 2 2 2 zinc-ribbon domain NMD3 PF04981.8 gi|284165713|ref|YP_003403992.1| - 0.0049 16.0 0.1 0.0053 15.9 0.1 1.0 1 0 0 1 1 1 1 NMD3 family Stc1 PF12898.2 gi|284165713|ref|YP_003403992.1| - 0.0066 16.4 0.2 0.0082 16.1 0.2 1.2 1 0 0 1 1 1 1 Stc1 domain PhnA_Zn_Ribbon PF08274.7 gi|284165713|ref|YP_003403992.1| - 0.009 15.7 1.9 0.2 11.4 0.2 2.2 2 0 0 2 2 2 1 PhnA Zinc-Ribbon Zn_Tnp_IS1 PF03811.8 gi|284165713|ref|YP_003403992.1| - 0.016 14.6 0.8 2.1 7.9 0.0 2.1 2 0 0 2 2 2 0 InsA N-terminal domain DZR PF12773.2 gi|284165713|ref|YP_003403992.1| - 0.017 14.8 1.2 0.041 13.7 0.9 1.6 1 1 0 1 1 1 0 Double zinc ribbon zf-TFIIB PF13453.1 gi|284165713|ref|YP_003403992.1| - 0.027 13.6 1.4 0.71 9.1 0.1 2.2 2 0 0 2 2 2 0 Transcription factor zinc-finger RNHCP PF12647.2 gi|284165713|ref|YP_003403992.1| - 0.039 13.7 0.9 0.055 13.3 0.6 1.3 1 1 0 1 1 1 0 RNHCP domain zf-CHY PF05495.7 gi|284165713|ref|YP_003403992.1| - 0.054 13.6 1.2 1.2 9.3 0.1 2.0 1 1 1 2 2 2 0 CHY zinc finger HypA PF01155.14 gi|284165713|ref|YP_003403992.1| - 0.064 12.9 0.2 0.067 12.8 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-CSL PF05207.8 gi|284165713|ref|YP_003403992.1| - 0.064 12.7 0.2 0.097 12.1 0.1 1.3 1 0 0 1 1 1 0 CSL zinc finger UPF0547 PF10571.4 gi|284165713|ref|YP_003403992.1| - 0.066 12.9 2.8 2 8.1 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc-ribbons_6 PF07191.7 gi|284165713|ref|YP_003403992.1| - 0.094 12.5 1.4 0.87 9.4 1.0 2.0 1 1 1 2 2 2 0 zinc-ribbons TFIIS_C PF01096.13 gi|284165713|ref|YP_003403992.1| - 0.17 11.5 1.7 3 7.5 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Rubredoxin PF00301.15 gi|284165713|ref|YP_003403992.1| - 0.31 10.9 4.9 0.24 11.2 0.8 2.1 1 1 1 2 2 2 0 Rubredoxin CpXC PF14353.1 gi|284165713|ref|YP_003403992.1| - 0.33 10.9 1.6 7.4 6.5 0.1 2.0 1 1 1 2 2 2 0 CpXC protein zf-RING_4 PF14570.1 gi|284165713|ref|YP_003403992.1| - 0.4 10.2 2.1 18 5.0 0.1 2.4 3 0 0 3 3 3 0 RING/Ubox like zinc-binding domain Zn_Tnp_IS1595 PF12760.2 gi|284165713|ref|YP_003403992.1| - 0.97 9.2 3.3 2.7 7.8 0.3 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain UPF0058 PF01893.11 gi|284165714|ref|YP_003403993.1| - 4.2e-20 71.6 0.0 4.9e-20 71.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 DUF555 PF04475.7 gi|284165715|ref|YP_003403994.1| - 2.9e-37 126.7 0.0 3.7e-37 126.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF555) Cwf_Cwc_15 PF04889.7 gi|284165715|ref|YP_003403994.1| - 0.087 12.5 3.2 0.1 12.3 2.2 1.1 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein OGG_N PF07934.7 gi|284165716|ref|YP_003403995.1| - 5.2e-16 58.6 0.0 8.6e-16 57.9 0.0 1.4 1 0 0 1 1 1 1 8-oxoguanine DNA glycosylase, N-terminal domain HhH-GPD PF00730.20 gi|284165716|ref|YP_003403995.1| - 1.2e-13 51.2 0.1 3.3e-13 49.8 0.0 1.8 3 0 0 3 3 3 1 HhH-GPD superfamily base excision DNA repair protein AlkA_N PF06029.6 gi|284165716|ref|YP_003403995.1| - 0.14 12.2 0.3 0.35 10.9 0.1 1.7 2 0 0 2 2 2 0 AlkA N-terminal domain DUF3784 PF12650.2 gi|284165717|ref|YP_003403996.1| - 6e-06 26.1 0.2 7.9e-06 25.7 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF3784) CopD PF05425.8 gi|284165717|ref|YP_003403996.1| - 0.15 12.3 4.4 0.67 10.1 0.9 2.1 2 0 0 2 2 2 0 Copper resistance protein D DUF4191 PF13829.1 gi|284165717|ref|YP_003403996.1| - 0.16 11.0 0.8 0.17 11.0 0.4 1.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4191) DUF898 PF05987.8 gi|284165717|ref|YP_003403996.1| - 0.2 10.4 3.2 0.23 10.3 1.9 1.5 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF898) 7TMR-DISM_7TM PF07695.6 gi|284165718|ref|YP_003403997.1| - 0.002 17.8 2.8 0.0023 17.6 1.9 1.0 1 0 0 1 1 1 1 7TM diverse intracellular signalling Man-6-P_recep PF02157.10 gi|284165718|ref|YP_003403997.1| - 0.012 14.6 0.3 0.013 14.5 0.2 1.1 1 0 0 1 1 1 0 Mannose-6-phosphate receptor PrgI PF12666.2 gi|284165718|ref|YP_003403997.1| - 0.068 13.3 0.6 0.085 13.0 0.4 1.1 1 0 0 1 1 1 0 PrgI family protein Cytochrom_B_N PF00033.14 gi|284165718|ref|YP_003403997.1| - 0.47 9.7 4.7 3 7.1 3.6 1.6 1 1 0 1 1 1 0 Cytochrome b(N-terminal)/b6/petB PepSY_TM PF03929.11 gi|284165718|ref|YP_003403997.1| - 0.89 10.0 4.5 0.55 10.7 0.3 2.2 2 0 0 2 2 2 0 PepSY-associated TM helix Acylphosphatase PF00708.13 gi|284165719|ref|YP_003403998.1| - 2.8e-26 91.4 0.0 3e-26 91.3 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase Carb_kinase PF01256.12 gi|284165722|ref|YP_003404001.1| - 2e-43 148.4 1.6 3.6e-43 147.5 1.1 1.4 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.10 gi|284165722|ref|YP_003404001.1| - 6.5e-42 142.9 0.7 1.3e-41 141.9 0.5 1.6 1 0 0 1 1 1 1 YjeF-related protein N-terminus Phos_pyr_kin PF08543.7 gi|284165722|ref|YP_003404001.1| - 2.4e-08 33.4 0.1 5.6e-08 32.2 0.1 1.6 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase HK PF02110.10 gi|284165722|ref|YP_003404001.1| - 3.2e-08 33.0 0.0 6.8e-08 31.9 0.0 1.4 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family MoaC PF01967.16 gi|284165723|ref|YP_003404002.1| - 4.7e-46 155.8 0.6 5.5e-46 155.6 0.4 1.0 1 0 0 1 1 1 1 MoaC family NMO PF03060.10 gi|284165724|ref|YP_003404003.1| - 2.2e-79 266.9 5.5 6.1e-79 265.5 3.8 1.6 1 1 0 1 1 1 1 Nitronate monooxygenase FMN_dh PF01070.13 gi|284165724|ref|YP_003404003.1| - 5.9e-10 38.5 8.4 9.1e-10 37.9 5.0 1.8 2 0 0 2 2 2 1 FMN-dependent dehydrogenase IMPDH PF00478.20 gi|284165724|ref|YP_003404003.1| - 9.5e-10 37.8 1.8 8.1e-09 34.8 1.2 2.0 1 1 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain His_biosynth PF00977.16 gi|284165724|ref|YP_003404003.1| - 0.0077 15.5 0.3 0.016 14.4 0.2 1.5 1 0 0 1 1 1 1 Histidine biosynthesis protein GDPD_2 PF13653.1 gi|284165724|ref|YP_003404003.1| - 0.11 12.6 0.5 27 5.1 0.0 3.1 3 0 0 3 3 3 0 Glycerophosphoryl diester phosphodiesterase family Glu_synthase PF01645.12 gi|284165724|ref|YP_003404003.1| - 0.15 10.9 3.2 0.29 9.9 2.1 1.5 1 1 0 1 1 1 0 Conserved region in glutamate synthase PLDc_N PF13396.1 gi|284165725|ref|YP_003404004.1| - 0.003 17.1 0.9 0.003 17.1 0.6 3.0 2 1 1 3 3 3 2 Phospholipase_D-nuclease N-terminal PrgI PF12666.2 gi|284165725|ref|YP_003404004.1| - 0.045 13.9 2.4 1.7 8.8 0.0 2.1 2 0 0 2 2 2 0 PrgI family protein adh_short PF00106.20 gi|284165726|ref|YP_003404005.1| - 2.2e-42 144.8 1.1 3e-42 144.3 0.8 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|284165726|ref|YP_003404005.1| - 2.9e-25 89.4 0.1 3.4e-25 89.2 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|284165726|ref|YP_003404005.1| - 1.5e-21 76.8 0.3 2.2e-21 76.3 0.2 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|284165726|ref|YP_003404005.1| - 0.0032 16.9 0.5 0.0046 16.4 0.1 1.5 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family ADH_zinc_N PF00107.21 gi|284165726|ref|YP_003404005.1| - 0.033 13.7 0.5 0.28 10.7 0.1 2.3 1 1 1 2 2 2 0 Zinc-binding dehydrogenase Abhydrolase_1 PF00561.15 gi|284165727|ref|YP_003404006.1| - 1.8e-16 60.3 0.0 3e-16 59.6 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold PhaC_N PF07167.8 gi|284165727|ref|YP_003404006.1| - 2.7e-14 52.9 0.0 4.3e-14 52.2 0.0 1.3 1 0 0 1 1 1 1 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus HHH_5 PF14520.1 gi|284165727|ref|YP_003404006.1| - 4.4e-12 45.9 0.5 1.2e-11 44.5 0.4 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix domain Abhydrolase_6 PF12697.2 gi|284165727|ref|YP_003404006.1| - 6.7e-09 35.9 0.0 1.7e-08 34.6 0.0 1.6 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|284165727|ref|YP_003404006.1| - 4.9e-07 29.5 0.0 5.4e-06 26.2 0.0 2.3 1 1 0 1 1 1 1 Alpha/beta hydrolase family PHB_depo_C PF06850.6 gi|284165727|ref|YP_003404006.1| - 3.6e-06 26.3 0.5 1.3e-05 24.4 0.0 1.9 2 0 0 2 2 2 1 PHB de-polymerase C-terminus DUF3141 PF11339.3 gi|284165727|ref|YP_003404006.1| - 1.4e-05 23.6 0.0 4.7e-05 21.9 0.1 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF3141) DLH PF01738.13 gi|284165727|ref|YP_003404006.1| - 0.00016 21.0 0.0 0.05 12.8 0.0 3.1 2 1 1 3 3 3 1 Dienelactone hydrolase family DUF4332 PF14229.1 gi|284165727|ref|YP_003404006.1| - 0.00025 21.0 0.3 0.0047 16.8 0.1 2.7 2 1 0 2 2 2 1 Domain of unknown function (DUF4332) Cdd1 PF11731.3 gi|284165727|ref|YP_003404006.1| - 0.0044 16.9 0.0 0.014 15.3 0.0 1.8 2 0 0 2 2 1 1 Pathogenicity locus HTH_Tnp_1 PF01527.15 gi|284165727|ref|YP_003404006.1| - 0.025 14.5 0.0 0.074 13.0 0.0 1.8 1 0 0 1 1 1 0 Transposase HTH_10 PF04967.7 gi|284165727|ref|YP_003404006.1| - 0.027 14.0 0.0 0.052 13.1 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain DNA_pol_lambd_f PF10391.4 gi|284165727|ref|YP_003404006.1| - 0.039 13.4 0.0 0.1 12.1 0.0 1.7 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda DUF2048 PF09752.4 gi|284165727|ref|YP_003404006.1| - 0.073 11.9 0.1 0.2 10.4 0.0 1.6 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2048) HTH_28 PF13518.1 gi|284165727|ref|YP_003404006.1| - 0.11 12.5 0.0 0.25 11.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Homez PF11569.3 gi|284165727|ref|YP_003404006.1| - 0.15 11.1 0.4 7.9 5.6 0.0 2.4 2 0 0 2 2 2 0 Homeodomain leucine-zipper encoding, Homez PHA_synth_III_E PF09712.5 gi|284165728|ref|YP_003404007.1| - 1.9e-09 37.3 14.6 6e-09 35.7 0.8 2.8 1 1 2 3 3 3 2 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) 5_nucleotid_C PF02872.13 gi|284165728|ref|YP_003404007.1| - 0.004 17.1 0.4 0.011 15.6 0.1 1.7 1 1 0 2 2 2 1 5'-nucleotidase, C-terminal domain FliD_C PF07195.7 gi|284165728|ref|YP_003404007.1| - 0.0091 15.3 1.1 0.069 12.4 0.7 1.9 1 1 0 1 1 1 1 Flagellar hook-associated protein 2 C-terminus RhoGEF PF00621.15 gi|284165728|ref|YP_003404007.1| - 0.02 14.8 0.1 0.028 14.2 0.1 1.5 1 1 0 1 1 1 0 RhoGEF domain DUF2365 PF10157.4 gi|284165728|ref|YP_003404007.1| - 0.062 13.1 0.4 5 7.0 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2365) Hs1pro-1_C PF07014.7 gi|284165728|ref|YP_003404007.1| - 0.064 12.5 0.5 0.11 11.8 0.3 1.6 1 1 0 1 1 1 0 Hs1pro-1 protein C-terminus Mating_N PF12731.2 gi|284165728|ref|YP_003404007.1| - 0.11 12.4 2.8 0.16 11.8 0.2 2.4 2 2 1 3 3 3 0 Mating-type protein beta 1 Phasin PF05597.6 gi|284165728|ref|YP_003404007.1| - 0.12 12.1 9.3 0.054 13.2 2.5 2.6 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Sipho_Gp157 PF05565.6 gi|284165728|ref|YP_003404007.1| - 0.29 10.6 6.4 0.15 11.6 0.6 2.3 1 1 0 2 2 2 0 Siphovirus Gp157 DUF4083 PF13314.1 gi|284165728|ref|YP_003404007.1| - 0.42 10.4 1.8 0.8 9.5 1.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4083) DUF29 PF01724.11 gi|284165728|ref|YP_003404007.1| - 0.75 9.6 7.3 0.7 9.7 0.7 2.7 1 1 2 3 3 3 0 Domain of unknown function DUF29 DUF445 PF04286.7 gi|284165728|ref|YP_003404007.1| - 1.5 8.2 7.7 0.45 9.9 1.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF445) FliG_M PF14841.1 gi|284165728|ref|YP_003404007.1| - 1.7 8.6 4.3 8.3 6.5 0.1 2.7 2 1 1 3 3 3 0 FliG middle domain DUF3947 PF13135.1 gi|284165728|ref|YP_003404007.1| - 2.5 8.3 4.4 0.43 10.8 0.4 1.7 2 0 0 2 2 1 0 Protein of unknown function (DUF3947) GP41 PF00517.12 gi|284165728|ref|YP_003404007.1| - 3.5 7.1 11.1 0.44 10.0 0.2 2.5 2 1 0 2 2 2 0 Retroviral envelope protein DUF745 PF05335.8 gi|284165728|ref|YP_003404007.1| - 4.4 6.7 8.2 5.4 6.4 3.9 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF745) Phage_Gp23 PF10669.4 gi|284165728|ref|YP_003404007.1| - 7.4 6.7 9.0 2.1 8.4 0.0 2.9 2 1 1 3 3 3 0 Protein gp23 (Bacteriophage A118) Metal_resist PF13801.1 gi|284165728|ref|YP_003404007.1| - 8.6 6.3 7.4 3.5 7.6 0.8 2.5 1 1 0 2 2 2 0 Heavy-metal resistance Sec6 PF06046.8 gi|284165729|ref|YP_003404008.1| - 0.012 13.7 0.5 0.017 13.2 0.3 1.1 1 0 0 1 1 1 0 Exocyst complex component Sec6 DUF3810 PF12725.2 gi|284165729|ref|YP_003404008.1| - 0.061 12.2 0.1 0.095 11.5 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3810) Mog1 PF04603.7 gi|284165729|ref|YP_003404008.1| - 0.19 11.6 4.8 0.083 12.8 1.9 1.5 2 0 0 2 2 2 0 Ran-interacting Mog1 protein ApoLp-III PF07464.6 gi|284165729|ref|YP_003404008.1| - 0.29 11.1 5.1 0.27 11.2 1.9 1.9 1 1 1 2 2 2 0 Apolipophorin-III precursor (apoLp-III) CENP-Q PF13094.1 gi|284165729|ref|YP_003404008.1| - 0.37 10.8 3.7 11 6.0 0.2 2.4 2 1 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit ISG65-75 PF11727.3 gi|284165729|ref|YP_003404008.1| - 0.61 9.0 5.1 0.57 9.1 0.1 2.0 1 1 1 2 2 2 0 Invariant surface glycoprotein Phasin_2 PF09361.5 gi|284165729|ref|YP_003404008.1| - 0.62 10.1 18.8 2 8.5 0.3 3.4 1 1 2 3 3 3 0 Phasin protein Spectrin PF00435.16 gi|284165729|ref|YP_003404008.1| - 0.8 10.0 5.1 11 6.3 0.6 2.7 1 1 2 3 3 3 0 Spectrin repeat ADH_zinc_N_2 PF13602.1 gi|284165729|ref|YP_003404008.1| - 0.83 10.5 4.0 0.38 11.6 0.4 1.9 2 0 0 2 2 2 0 Zinc-binding dehydrogenase YtxH PF12732.2 gi|284165729|ref|YP_003404008.1| - 1.5 9.2 4.3 17 5.8 3.0 2.5 1 1 0 1 1 1 0 YtxH-like protein DUF883 PF05957.8 gi|284165729|ref|YP_003404008.1| - 4.9 7.6 7.9 8.4 6.8 1.4 2.8 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF883) DUF2580 PF10824.3 gi|284165729|ref|YP_003404008.1| - 7.1 7.0 12.8 12 6.2 3.3 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF2580) Antitoxin-MazE PF04014.13 gi|284165730|ref|YP_003404009.1| - 0.0088 15.7 0.6 0.013 15.2 0.4 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE MaoC_dehydratas PF01575.14 gi|284165731|ref|YP_003404010.1| - 2.3e-23 81.8 0.0 4e-23 81.1 0.0 1.4 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|284165731|ref|YP_003404010.1| - 1.2e-07 31.6 0.0 3e-07 30.2 0.0 1.6 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase PGM_PMM_I PF02878.11 gi|284165732|ref|YP_003404011.1| - 1.4e-32 112.0 0.0 3.9e-32 110.6 0.0 1.8 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|284165732|ref|YP_003404011.1| - 4.6e-17 62.2 0.7 2.7e-15 56.5 0.5 2.7 1 1 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|284165732|ref|YP_003404011.1| - 3.8e-12 46.0 0.0 1.2e-11 44.4 0.0 1.9 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.11 gi|284165732|ref|YP_003404011.1| - 0.00024 21.0 0.0 0.0009 19.2 0.0 2.0 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III dCMP_cyt_deam_1 PF00383.17 gi|284165733|ref|YP_003404012.1| - 2e-17 62.7 0.1 2.4e-17 62.4 0.1 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.6 gi|284165733|ref|YP_003404012.1| - 1.7e-11 44.1 0.1 2.3e-11 43.7 0.1 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region Fer2_4 PF13510.1 gi|284165733|ref|YP_003404012.1| - 0.056 13.2 0.3 0.095 12.5 0.2 1.3 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain MafB19-deam PF14437.1 gi|284165733|ref|YP_003404012.1| - 0.093 12.3 0.5 0.19 11.3 0.3 1.6 1 1 0 1 1 1 0 MafB19-like deaminase Pentapeptide PF00805.17 gi|284165733|ref|YP_003404012.1| - 0.097 11.9 0.1 0.19 10.9 0.1 1.5 1 0 0 1 1 1 0 Pentapeptide repeats (8 copies) YwqJ-deaminase PF14431.1 gi|284165733|ref|YP_003404012.1| - 0.16 11.8 0.5 1.8 8.3 0.4 2.0 1 1 1 2 2 2 0 YwqJ-like deaminase DUF389 PF04087.9 gi|284165734|ref|YP_003404013.1| - 7.9e-36 123.0 20.0 7.9e-36 123.0 13.9 2.0 3 0 0 3 3 3 1 Domain of unknown function (DUF389) UPF0449 PF15136.1 gi|284165734|ref|YP_003404013.1| - 0.044 13.9 0.1 0.086 13.0 0.1 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0449 Propep_M14 PF02244.11 gi|284165734|ref|YP_003404013.1| - 0.048 13.3 0.1 0.13 11.9 0.0 1.7 2 0 0 2 2 2 0 Carboxypeptidase activation peptide DUF488 PF04343.8 gi|284165735|ref|YP_003404014.1| - 7.5e-10 39.2 4.3 5.1e-09 36.5 2.9 2.1 1 1 0 1 1 1 1 Protein of unknown function, DUF488 DUF4326 PF14216.1 gi|284165735|ref|YP_003404014.1| - 0.041 14.4 0.7 0.077 13.5 0.4 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4326) CP12 PF02672.10 gi|284165735|ref|YP_003404014.1| - 0.11 12.9 2.0 0.27 11.6 1.4 1.7 1 0 0 1 1 1 0 CP12 domain PNP_UDP_1 PF01048.15 gi|284165736|ref|YP_003404015.1| - 5.9e-49 166.1 3.3 7e-49 165.9 2.3 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily MS_channel PF00924.13 gi|284165737|ref|YP_003404016.1| - 6.6e-17 61.5 3.4 6.6e-17 61.5 2.3 1.6 2 0 0 2 2 2 1 Mechanosensitive ion channel TM_helix PF05552.7 gi|284165737|ref|YP_003404016.1| - 1.3e-06 27.9 0.3 1.3e-06 27.9 0.2 3.6 3 1 0 3 3 3 2 Conserved TM helix DUF443 PF04276.7 gi|284165737|ref|YP_003404016.1| - 0.0042 16.5 8.6 0.0065 15.9 6.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF443) Fimbrial_PilY2 PF14481.1 gi|284165737|ref|YP_003404016.1| - 0.16 11.4 0.5 0.5 9.8 0.0 1.9 2 0 0 2 2 2 0 Type 4 fimbrial biogenesis protein PilY2 DUF3353 PF11833.3 gi|284165737|ref|YP_003404016.1| - 1.7 8.0 4.8 2.9 7.2 0.0 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF3353) DisA_N PF02457.11 gi|284165738|ref|YP_003404017.1| - 1.5e-25 88.6 0.0 2.3e-25 88.0 0.0 1.3 1 0 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding PK_C PF02887.11 gi|284165738|ref|YP_003404017.1| - 0.04 13.4 0.0 2.2 7.8 0.0 3.1 1 1 0 1 1 1 0 Pyruvate kinase, alpha/beta domain TFIIB PF00382.14 gi|284165741|ref|YP_003404020.1| - 2.9e-07 30.1 0.1 6e-07 29.1 0.1 1.5 1 1 0 1 1 1 1 Transcription factor TFIIB repeat Sigma70_r4 PF04545.11 gi|284165741|ref|YP_003404020.1| - 0.006 15.8 0.1 1.3 8.4 0.0 2.2 2 0 0 2 2 2 2 Sigma-70, region 4 Leptin PF02024.10 gi|284165741|ref|YP_003404020.1| - 0.026 14.1 0.0 0.033 13.8 0.0 1.2 1 0 0 1 1 1 0 Leptin HTH_23 PF13384.1 gi|284165741|ref|YP_003404020.1| - 0.061 12.9 0.1 0.29 10.8 0.0 1.9 2 0 0 2 2 2 0 Homeodomain-like domain Nuc_N PF14448.1 gi|284165741|ref|YP_003404020.1| - 0.065 12.7 0.0 0.094 12.2 0.0 1.2 1 0 0 1 1 1 0 Nuclease N terminal CTP_transf_2 PF01467.21 gi|284165742|ref|YP_003404021.1| - 8.7e-14 51.8 0.1 1.1e-12 48.3 0.1 2.0 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|284165742|ref|YP_003404021.1| - 0.0032 17.1 0.0 0.021 14.4 0.0 2.0 2 0 0 2 2 2 1 FAD synthetase DUF2482 PF10655.4 gi|284165742|ref|YP_003404021.1| - 0.073 13.1 0.0 0.15 12.1 0.0 1.5 1 1 0 1 1 1 0 Hypothetical protein of unknown function (DUF2482) PTA_PTB PF01515.14 gi|284165743|ref|YP_003404022.1| - 4.1e-92 308.6 0.0 5.5e-92 308.2 0.0 1.2 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase Malic_M PF03949.10 gi|284165743|ref|YP_003404022.1| - 6.7e-68 228.9 0.4 6.7e-68 228.9 0.3 1.6 2 0 0 2 2 2 1 Malic enzyme, NAD binding domain malic PF00390.14 gi|284165743|ref|YP_003404022.1| - 1.4e-30 106.2 0.1 2.3e-28 99.0 0.0 2.4 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain Pectate_lyase_3 PF12708.2 gi|284165744|ref|YP_003404023.1| - 1.7e-18 67.5 1.8 4.5e-16 59.6 1.2 2.5 1 1 0 1 1 1 1 Pectate lyase superfamily protein Beta_helix PF13229.1 gi|284165744|ref|YP_003404023.1| - 7.5e-11 42.0 10.8 1.8e-05 24.5 2.6 2.3 1 1 1 2 2 2 2 Right handed beta helix region Disaggr_assoc PF08480.5 gi|284165744|ref|YP_003404023.1| - 0.027 13.9 0.1 0.076 12.4 0.1 1.7 1 0 0 1 1 1 0 Disaggregatase related PQQ_3 PF13570.1 gi|284165745|ref|YP_003404024.1| - 4.5e-44 147.5 34.3 8.3e-09 35.4 0.3 8.5 8 0 0 8 8 8 8 PQQ-like domain PQQ_2 PF13360.1 gi|284165745|ref|YP_003404024.1| - 1.3e-36 126.2 10.4 1.5e-19 70.3 2.1 3.5 1 1 0 2 2 2 2 PQQ-like domain PQQ PF01011.16 gi|284165745|ref|YP_003404024.1| - 1.4e-28 96.9 21.6 6.6e-08 31.7 0.1 7.4 8 1 1 9 9 9 5 PQQ enzyme repeat TAT_signal PF10518.4 gi|284165745|ref|YP_003404024.1| - 0.00025 20.8 3.7 0.0007 19.4 2.6 1.8 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence SMI1_KNR4 PF09346.5 gi|284165745|ref|YP_003404024.1| - 0.0099 15.8 1.0 0.069 13.1 0.7 2.3 1 1 0 1 1 1 1 SMI1 / KNR4 family (SUKH-1) PD40 PF07676.7 gi|284165745|ref|YP_003404024.1| - 0.015 14.9 2.6 1.9 8.2 0.0 3.2 2 0 0 2 2 2 0 WD40-like Beta Propeller Repeat CytB6-F_Fe-S PF08802.5 gi|284165745|ref|YP_003404024.1| - 0.087 12.8 0.3 0.087 12.8 0.2 2.1 2 0 0 2 2 2 0 Cytochrome B6-F complex Fe-S subunit PFU PF09070.6 gi|284165745|ref|YP_003404024.1| - 0.19 11.7 1.1 6.1 6.8 0.2 2.3 2 0 0 2 2 2 0 PFU (PLAA family ubiquitin binding) Ribosomal_S8e PF01201.17 gi|284165746|ref|YP_003404025.1| - 2.4e-35 121.5 5.2 2.6e-35 121.4 3.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e Ribosomal_L2 PF00181.18 gi|284165746|ref|YP_003404025.1| - 0.24 11.3 2.0 2.1 8.3 0.0 2.4 1 1 1 2 2 2 0 Ribosomal Proteins L2, RNA binding domain Aldo_ket_red PF00248.16 gi|284165747|ref|YP_003404026.1| - 2.5e-83 279.1 0.0 2.8e-83 279.0 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family PhoU PF01895.14 gi|284165748|ref|YP_003404027.1| - 1.2e-21 76.9 8.9 1.3e-15 57.5 0.6 2.4 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|284165748|ref|YP_003404027.1| - 6.1e-09 35.4 0.0 1.7e-08 34.0 0.0 1.8 1 0 0 1 1 1 1 Antidote-toxin recognition MazE ABC_tran PF00005.22 gi|284165749|ref|YP_003404028.1| - 1.3e-28 99.9 0.0 2.1e-28 99.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284165749|ref|YP_003404028.1| - 1.8e-14 54.4 0.1 4.2e-12 46.6 0.0 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|284165749|ref|YP_003404028.1| - 1.9e-09 37.1 0.2 2.7e-08 33.2 0.2 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|284165749|ref|YP_003404028.1| - 8.1e-06 26.0 0.0 1.6e-05 25.0 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|284165749|ref|YP_003404028.1| - 3.1e-05 23.1 0.0 0.044 12.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|284165749|ref|YP_003404028.1| - 0.0001 21.7 0.0 0.00024 20.5 0.0 1.6 2 0 0 2 2 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|284165749|ref|YP_003404028.1| - 0.00028 21.2 0.1 0.0029 17.9 0.0 2.1 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|284165749|ref|YP_003404028.1| - 0.00039 20.4 0.9 0.0016 18.4 0.6 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|284165749|ref|YP_003404028.1| - 0.001 19.8 0.1 0.0034 18.1 0.0 2.1 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|284165749|ref|YP_003404028.1| - 0.0012 18.1 0.0 0.0021 17.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|284165749|ref|YP_003404028.1| - 0.002 18.0 0.0 0.0047 16.7 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|284165749|ref|YP_003404028.1| - 0.0028 17.0 0.0 0.011 15.1 0.0 1.9 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|284165749|ref|YP_003404028.1| - 0.0035 17.6 0.0 0.0096 16.2 0.0 1.9 2 1 0 2 2 1 1 AAA domain DeoRC PF00455.17 gi|284165749|ref|YP_003404028.1| - 0.014 15.0 0.0 0.025 14.2 0.0 1.3 1 0 0 1 1 1 0 DeoR C terminal sensor domain Rad17 PF03215.10 gi|284165749|ref|YP_003404028.1| - 0.02 13.5 0.0 0.041 12.5 0.0 1.5 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein Arch_ATPase PF01637.13 gi|284165749|ref|YP_003404028.1| - 0.025 14.2 0.1 0.18 11.4 0.1 2.1 1 1 0 1 1 1 0 Archaeal ATPase NACHT PF05729.7 gi|284165749|ref|YP_003404028.1| - 0.032 13.9 0.0 0.079 12.6 0.0 1.6 2 0 0 2 2 2 0 NACHT domain cobW PF02492.14 gi|284165749|ref|YP_003404028.1| - 0.038 13.4 0.0 0.21 10.9 0.0 1.9 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_10 PF12846.2 gi|284165749|ref|YP_003404028.1| - 0.042 13.2 0.2 0.11 11.9 0.0 1.7 2 1 0 2 2 2 0 AAA-like domain AAA PF00004.24 gi|284165749|ref|YP_003404028.1| - 0.045 13.9 0.0 0.66 10.1 0.0 2.5 2 1 1 3 3 3 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|284165749|ref|YP_003404028.1| - 0.062 13.2 0.0 0.19 11.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|284165749|ref|YP_003404028.1| - 0.068 13.3 0.0 0.2 11.8 0.0 1.8 2 0 0 2 2 1 0 RNA helicase ABC_ATPase PF09818.4 gi|284165749|ref|YP_003404028.1| - 0.071 11.6 0.1 2.9 6.3 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_19 PF13245.1 gi|284165749|ref|YP_003404028.1| - 0.078 12.7 0.0 8.3 6.2 0.0 2.4 2 0 0 2 2 2 0 Part of AAA domain NB-ARC PF00931.17 gi|284165749|ref|YP_003404028.1| - 0.082 11.7 0.0 0.11 11.3 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain PRK PF00485.13 gi|284165749|ref|YP_003404028.1| - 0.09 12.3 0.0 0.18 11.3 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Shigella_OspC PF06128.6 gi|284165749|ref|YP_003404028.1| - 0.098 12.1 0.1 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 Shigella flexneri OspC protein AAA_5 PF07728.9 gi|284165749|ref|YP_003404028.1| - 0.11 12.1 0.1 0.51 10.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Adeno_IVa2 PF02456.10 gi|284165749|ref|YP_003404028.1| - 0.13 10.9 0.0 0.92 8.0 0.0 2.0 2 0 0 2 2 2 0 Adenovirus IVa2 protein G-alpha PF00503.15 gi|284165749|ref|YP_003404028.1| - 0.16 10.6 0.0 0.27 9.8 0.0 1.3 1 0 0 1 1 1 0 G-protein alpha subunit PBP_like_2 PF12849.2 gi|284165750|ref|YP_003404029.1| - 1e-29 103.8 1.7 3.1e-29 102.3 1.2 1.6 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|284165750|ref|YP_003404029.1| - 2.4e-24 85.3 0.0 5.2e-24 84.2 0.0 1.5 2 0 0 2 2 2 1 PBP superfamily domain DDE_Tnp_ISAZ013 PF07592.6 gi|284165750|ref|YP_003404029.1| - 0.011 14.5 0.0 0.018 13.7 0.0 1.3 1 0 0 1 1 1 0 Rhodopirellula transposase DDE domain SBP_bac_11 PF13531.1 gi|284165750|ref|YP_003404029.1| - 0.089 12.4 0.1 0.39 10.3 0.0 2.0 3 0 0 3 3 3 0 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|284165750|ref|YP_003404029.1| - 0.4 10.7 3.9 1.5 9.0 2.7 2.0 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.17 gi|284165751|ref|YP_003404030.1| - 1.6e-16 60.3 15.8 1.6e-16 60.3 11.0 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3814 PF12769.2 gi|284165751|ref|YP_003404030.1| - 0.018 15.1 1.0 0.018 15.1 0.7 2.6 1 1 0 2 2 2 0 Domain of unknown function (DUF3814) BPD_transp_1 PF00528.17 gi|284165752|ref|YP_003404031.1| - 6.5e-22 77.9 20.0 6.5e-22 77.9 13.9 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3154 PF11351.3 gi|284165752|ref|YP_003404031.1| - 1.1 8.9 3.4 5.1 6.8 0.4 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3154) ABC_tran PF00005.22 gi|284165753|ref|YP_003404032.1| - 1.8e-28 99.5 0.0 2.9e-28 98.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284165753|ref|YP_003404032.1| - 3.3e-14 53.5 0.1 4e-07 30.3 0.0 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|284165753|ref|YP_003404032.1| - 2.2e-09 36.9 0.2 4e-08 32.7 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|284165753|ref|YP_003404032.1| - 6.4e-06 26.3 0.0 1.3e-05 25.3 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|284165753|ref|YP_003404032.1| - 3.2e-05 23.1 0.0 0.045 12.7 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|284165753|ref|YP_003404032.1| - 0.00011 21.6 0.0 0.00025 20.4 0.0 1.6 2 0 0 2 2 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|284165753|ref|YP_003404032.1| - 0.00025 21.0 0.6 0.00094 19.2 0.4 1.8 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|284165753|ref|YP_003404032.1| - 0.00056 19.1 0.0 0.00099 18.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|284165753|ref|YP_003404032.1| - 0.00058 20.2 0.0 0.0035 17.6 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|284165753|ref|YP_003404032.1| - 0.00091 20.0 0.1 0.0026 18.5 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|284165753|ref|YP_003404032.1| - 0.002 17.9 0.0 0.005 16.7 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|284165753|ref|YP_003404032.1| - 0.0041 17.4 0.0 0.01 16.1 0.0 1.8 2 1 0 2 2 1 1 AAA domain AAA_25 PF13481.1 gi|284165753|ref|YP_003404032.1| - 0.0069 15.8 0.0 0.027 13.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.10 gi|284165753|ref|YP_003404032.1| - 0.01 14.5 0.0 0.02 13.6 0.0 1.4 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein DeoRC PF00455.17 gi|284165753|ref|YP_003404032.1| - 0.014 14.9 0.0 0.026 14.1 0.0 1.3 1 0 0 1 1 1 0 DeoR C terminal sensor domain Arch_ATPase PF01637.13 gi|284165753|ref|YP_003404032.1| - 0.027 14.1 0.1 0.17 11.5 0.1 2.1 1 1 0 1 1 1 0 Archaeal ATPase Adeno_IVa2 PF02456.10 gi|284165753|ref|YP_003404032.1| - 0.032 12.8 0.0 0.22 10.1 0.0 1.9 2 0 0 2 2 2 0 Adenovirus IVa2 protein NACHT PF05729.7 gi|284165753|ref|YP_003404032.1| - 0.033 13.8 0.0 0.081 12.5 0.0 1.6 1 0 0 1 1 1 0 NACHT domain cobW PF02492.14 gi|284165753|ref|YP_003404032.1| - 0.039 13.3 0.0 0.22 10.9 0.0 1.9 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_10 PF12846.2 gi|284165753|ref|YP_003404032.1| - 0.044 13.2 0.2 0.11 11.9 0.0 1.7 2 1 0 2 2 2 0 AAA-like domain AAA PF00004.24 gi|284165753|ref|YP_003404032.1| - 0.048 13.8 0.0 0.7 10.0 0.0 2.5 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|284165753|ref|YP_003404032.1| - 0.054 13.3 0.0 0.19 11.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.4 gi|284165753|ref|YP_003404032.1| - 0.06 11.9 0.0 2.4 6.6 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class NB-ARC PF00931.17 gi|284165753|ref|YP_003404032.1| - 0.067 12.0 0.0 0.12 11.2 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_19 PF13245.1 gi|284165753|ref|YP_003404032.1| - 0.068 12.9 0.0 7.9 6.3 0.0 2.5 2 0 0 2 2 2 0 Part of AAA domain RNA_helicase PF00910.17 gi|284165753|ref|YP_003404032.1| - 0.076 13.2 0.0 0.21 11.7 0.0 1.7 2 0 0 2 2 1 0 RNA helicase AAA_5 PF07728.9 gi|284165753|ref|YP_003404032.1| - 0.097 12.3 0.1 0.52 10.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) PRK PF00485.13 gi|284165753|ref|YP_003404032.1| - 0.1 12.1 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Shigella_OspC PF06128.6 gi|284165753|ref|YP_003404032.1| - 0.11 12.0 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 Shigella flexneri OspC protein AAA_30 PF13604.1 gi|284165753|ref|YP_003404032.1| - 0.11 12.0 0.0 0.67 9.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain G-alpha PF00503.15 gi|284165753|ref|YP_003404032.1| - 0.12 11.0 0.0 0.17 10.5 0.0 1.3 1 0 0 1 1 1 0 G-protein alpha subunit DUF457 PF04307.9 gi|284165754|ref|YP_003404033.1| - 5.4e-18 64.8 9.8 6.7e-18 64.5 6.8 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) ECF-ribofla_trS PF07155.7 gi|284165754|ref|YP_003404033.1| - 0.35 10.5 5.7 0.12 12.0 1.6 1.7 1 1 0 1 1 1 0 ECF-type riboflavin transporter, S component PhoU PF01895.14 gi|284165755|ref|YP_003404034.1| - 6.7e-36 122.6 14.7 3.8e-19 68.9 1.5 2.2 2 0 0 2 2 2 2 PhoU domain Bactofilin PF04519.8 gi|284165756|ref|YP_003404035.1| - 4.5e-10 39.4 6.2 4.5e-08 33.0 0.6 3.3 2 2 1 3 3 3 3 Polymer-forming cytoskeletal Hexapep PF00132.19 gi|284165756|ref|YP_003404035.1| - 3.4e-07 29.4 13.1 0.011 15.1 0.0 6.1 6 1 1 7 7 7 3 Bacterial transferase hexapeptide (six repeats) DUF3494 PF11999.3 gi|284165756|ref|YP_003404035.1| - 5.2e-06 26.2 0.8 0.00086 18.9 0.2 2.7 2 1 1 3 3 3 3 Protein of unknown function (DUF3494) Hexapep_2 PF14602.1 gi|284165756|ref|YP_003404035.1| - 0.0018 17.7 8.7 0.2 11.2 0.0 5.1 5 1 0 5 5 5 2 Hexapeptide repeat of succinyl-transferase Fer4_11 PF13247.1 gi|284165758|ref|YP_003404037.1| - 5.3e-18 64.7 12.4 6.9e-15 54.7 2.1 2.8 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|284165758|ref|YP_003404037.1| - 4.2e-16 59.0 19.7 1.9e-08 34.5 4.7 3.4 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|284165758|ref|YP_003404037.1| - 5.4e-12 45.7 24.6 9.1e-10 38.6 4.2 3.1 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|284165758|ref|YP_003404037.1| - 9.9e-10 38.0 18.7 2e-06 27.5 1.7 2.8 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|284165758|ref|YP_003404037.1| - 1.7e-06 27.5 34.0 0.00013 21.6 1.3 4.7 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|284165758|ref|YP_003404037.1| - 2.2e-05 24.6 16.4 0.016 15.5 0.9 3.5 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|284165758|ref|YP_003404037.1| - 8e-05 22.0 35.6 0.00063 19.2 2.4 5.2 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|284165758|ref|YP_003404037.1| - 0.00015 21.5 32.5 0.0084 15.9 1.6 4.5 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_8 PF13183.1 gi|284165758|ref|YP_003404037.1| - 0.00045 20.1 22.0 0.057 13.4 5.6 3.4 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|284165758|ref|YP_003404037.1| - 0.005 17.0 3.0 0.005 17.0 2.1 4.6 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|284165758|ref|YP_003404037.1| - 0.031 14.8 41.7 0.33 11.6 3.8 4.4 4 0 0 4 4 4 0 4Fe-4S binding domain TAT_signal PF10518.4 gi|284165758|ref|YP_003404037.1| - 0.05 13.6 0.4 0.11 12.5 0.3 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Fer4_18 PF13746.1 gi|284165758|ref|YP_003404037.1| - 0.3 11.5 24.4 14 6.1 1.0 4.5 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|284165758|ref|YP_003404037.1| - 0.66 10.7 27.2 2.4 8.9 2.1 4.2 2 1 4 6 6 6 0 4Fe-4S double cluster binding domain HMGL-like PF00682.14 gi|284165760|ref|YP_003404039.1| - 1.3e-60 205.0 2.7 1.3e-60 205.0 1.9 1.7 2 0 0 2 2 2 1 HMGL-like LeuA_dimer PF08502.5 gi|284165760|ref|YP_003404039.1| - 1.8e-30 105.4 2.3 3.9e-30 104.3 1.6 1.6 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain DUF2620 PF10941.3 gi|284165760|ref|YP_003404039.1| - 0.048 13.6 0.2 0.13 12.2 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function DUF2620 Pribosyltran PF00156.22 gi|284165761|ref|YP_003404040.1| - 1e-20 73.6 0.4 1.5e-20 73.1 0.3 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|284165761|ref|YP_003404040.1| - 0.0097 15.1 0.0 0.012 14.8 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|284165761|ref|YP_003404040.1| - 0.023 13.9 0.0 0.025 13.8 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase DUF192 PF02643.10 gi|284165762|ref|YP_003404041.1| - 2.1e-17 62.7 0.0 2.4e-17 62.5 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 TAT_signal PF10518.4 gi|284165763|ref|YP_003404042.1| - 0.18 11.8 1.7 0.34 11.0 1.2 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence HNH PF01844.18 gi|284165764|ref|YP_003404043.1| - 0.062 13.1 3.1 0.13 12.2 2.1 1.6 1 0 0 1 1 1 0 HNH endonuclease DUF968 PF06147.6 gi|284165764|ref|YP_003404043.1| - 0.077 12.8 1.6 0.15 11.9 1.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF968) C1_1 PF00130.17 gi|284165764|ref|YP_003404043.1| - 0.088 12.5 4.6 0.32 10.7 3.2 2.0 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Chromo PF00385.19 gi|284165764|ref|YP_003404043.1| - 0.098 12.3 0.8 0.21 11.3 0.0 2.0 2 0 0 2 2 2 0 Chromo (CHRromatin Organisation MOdifier) domain PEPcase PF00311.12 gi|284165765|ref|YP_003404044.1| - 1.6e-240 800.1 0.0 2.4e-240 799.6 0.0 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase PEPcase_2 PF14010.1 gi|284165765|ref|YP_003404044.1| - 0.00011 20.6 0.0 0.00018 19.9 0.0 1.3 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase HHH_5 PF14520.1 gi|284165765|ref|YP_003404044.1| - 0.044 13.9 0.0 9.5 6.4 0.0 3.5 2 0 0 2 2 2 0 Helix-hairpin-helix domain Glycos_transf_2 PF00535.21 gi|284165766|ref|YP_003404045.1| - 2.1e-18 66.5 0.1 2.6e-16 59.7 0.1 2.1 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|284165766|ref|YP_003404045.1| - 0.00019 21.3 0.1 0.0013 18.6 0.0 2.2 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Lig_chan-Glu_bd PF10613.4 gi|284165766|ref|YP_003404045.1| - 0.1 12.5 0.1 0.7 9.9 0.0 2.1 2 0 0 2 2 2 0 Ligated ion channel L-glutamate- and glycine-binding site DUF1936 PF09151.5 gi|284165766|ref|YP_003404045.1| - 0.17 11.4 2.3 1.7 8.2 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) DUF354 PF04007.7 gi|284165767|ref|YP_003404046.1| - 2.7e-19 69.2 0.0 1.5e-14 53.6 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF354) Glyco_trans_4_2 PF13477.1 gi|284165767|ref|YP_003404046.1| - 2.7e-07 30.5 0.0 4e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_4_4 PF13579.1 gi|284165767|ref|YP_003404046.1| - 8.4e-05 22.7 4.9 0.00026 21.1 0.9 2.5 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_28 PF03033.15 gi|284165767|ref|YP_003404046.1| - 0.0056 16.4 0.1 0.017 14.9 0.1 1.8 1 1 0 1 1 1 1 Glycosyltransferase family 28 N-terminal domain Glyco_transf_4 PF13439.1 gi|284165767|ref|YP_003404046.1| - 0.015 15.0 0.2 0.031 13.9 0.0 1.5 2 0 0 2 2 2 0 Glycosyltransferase Family 4 Polysacc_lyase PF14099.1 gi|284165769|ref|YP_003404048.1| - 3e-05 23.7 0.8 4.1e-05 23.3 0.5 1.3 1 0 0 1 1 1 1 Polysaccharide lyase D-aminoacyl_C PF07908.7 gi|284165769|ref|YP_003404048.1| - 0.0018 17.5 0.1 0.035 13.4 0.0 2.4 2 0 0 2 2 2 1 D-aminoacylase, C-terminal region DUF1080 PF06439.6 gi|284165769|ref|YP_003404048.1| - 0.021 14.7 0.1 0.041 13.7 0.1 1.4 1 1 0 1 1 1 0 Domain of Unknown Function (DUF1080) TAT_signal PF10518.4 gi|284165770|ref|YP_003404049.1| - 0.065 13.2 2.3 0.19 11.7 1.6 1.9 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Acetyltransf_6 PF13480.1 gi|284165771|ref|YP_003404050.1| - 4.5e-13 49.3 0.2 8.1e-13 48.5 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FemAB PF02388.11 gi|284165771|ref|YP_003404050.1| - 4e-06 25.7 0.0 0.0032 16.2 0.0 2.6 2 1 1 3 3 3 2 FemAB family Acetyltransf_6 PF13480.1 gi|284165772|ref|YP_003404051.1| - 3.1e-16 59.6 0.1 6.2e-16 58.6 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FemAB PF02388.11 gi|284165772|ref|YP_003404051.1| - 3.3e-09 35.9 0.4 0.00012 20.8 0.1 2.5 3 0 0 3 3 3 2 FemAB family DUF482 PF04339.7 gi|284165772|ref|YP_003404051.1| - 5.8e-09 35.2 0.1 0.00012 21.1 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function, DUF482 DUF1080 PF06439.6 gi|284165773|ref|YP_003404052.1| - 0.044 13.6 0.0 0.11 12.3 0.0 1.7 1 1 0 1 1 1 0 Domain of Unknown Function (DUF1080) Polysacc_lyase PF14099.1 gi|284165773|ref|YP_003404052.1| - 0.062 12.9 0.1 0.21 11.2 0.1 1.9 2 0 0 2 2 2 0 Polysaccharide lyase Polysacc_synt PF01943.12 gi|284165775|ref|YP_003404054.1| - 1.1e-23 83.9 9.0 1.1e-23 83.9 6.3 2.5 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|284165775|ref|YP_003404054.1| - 1.3e-14 54.1 14.4 1.3e-14 54.1 10.0 3.5 2 1 1 3 3 3 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.1 gi|284165775|ref|YP_003404054.1| - 4e-14 52.6 19.4 4e-14 52.6 13.5 2.7 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein MatE PF01554.13 gi|284165775|ref|YP_003404054.1| - 1e-07 31.7 1.7 1e-07 31.7 1.2 3.8 3 1 0 3 3 3 2 MatE MVIN PF03023.9 gi|284165775|ref|YP_003404054.1| - 0.0014 17.1 20.1 0.0046 15.4 13.5 2.3 1 1 0 1 1 1 1 MviN-like protein Acetyltransf_7 PF13508.1 gi|284165776|ref|YP_003404055.1| - 0.018 15.1 0.0 0.028 14.5 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|284165776|ref|YP_003404055.1| - 0.056 13.3 0.0 0.081 12.7 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|284165776|ref|YP_003404055.1| - 0.088 12.8 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) family PepSY_TM_3 PF13706.1 gi|284165777|ref|YP_003404056.1| - 0.015 14.6 2.1 0.015 14.6 1.5 1.8 2 0 0 2 2 2 0 PepSY-associated TM helix DUF3429 PF11911.3 gi|284165777|ref|YP_003404056.1| - 0.048 13.6 4.0 0.06 13.3 2.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3429) DUF2776 PF10951.3 gi|284165777|ref|YP_003404056.1| - 0.084 11.9 1.0 0.094 11.7 0.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2776) DUF4131 PF13567.1 gi|284165777|ref|YP_003404056.1| - 2.5 7.4 5.1 3.3 7.0 3.6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) bZIP_2 PF07716.10 gi|284165778|ref|YP_003404057.1| - 0.013 15.3 0.1 0.021 14.6 0.1 1.3 1 0 0 1 1 1 0 Basic region leucine zipper bZIP_1 PF00170.16 gi|284165778|ref|YP_003404057.1| - 0.028 14.3 0.1 0.047 13.6 0.1 1.3 1 0 0 1 1 1 0 bZIP transcription factor NYD-SP28_assoc PF14775.1 gi|284165778|ref|YP_003404057.1| - 0.12 12.0 0.2 0.26 11.0 0.1 1.5 1 0 0 1 1 1 0 Sperm tail C-terminal domain DUF1616 PF07760.6 gi|284165779|ref|YP_003404058.1| - 1.4e-46 158.9 0.0 2.6e-46 158.0 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1616) UPF0104 PF03706.8 gi|284165779|ref|YP_003404058.1| - 0.0069 15.6 2.6 0.0069 15.6 1.8 2.1 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0104) DUF2371 PF10177.4 gi|284165779|ref|YP_003404058.1| - 0.03 14.1 0.0 0.064 13.1 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2371) Abi PF02517.11 gi|284165779|ref|YP_003404058.1| - 0.073 13.2 2.7 0.25 11.5 2.0 1.8 1 1 0 1 1 1 0 CAAX protease self-immunity HATPase_c PF02518.21 gi|284165780|ref|YP_003404059.1| - 6.7e-16 57.9 0.0 1.3e-15 57.0 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|284165780|ref|YP_003404059.1| - 1.7e-14 53.5 2.2 1.7e-14 53.5 1.6 2.2 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.20 gi|284165780|ref|YP_003404059.1| - 2.6e-11 43.5 4.1 2.6e-11 43.5 2.8 2.6 2 0 0 2 2 2 1 HAMP domain HATPase_c_2 PF13581.1 gi|284165780|ref|YP_003404059.1| - 0.00036 20.3 0.0 0.00091 19.0 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain Pro_Al_protease PF02983.9 gi|284165780|ref|YP_003404059.1| - 0.0027 17.6 0.4 0.0027 17.6 0.3 3.1 3 0 0 3 3 3 1 Alpha-lytic protease prodomain HATPase_c_3 PF13589.1 gi|284165780|ref|YP_003404059.1| - 0.045 13.4 0.0 0.11 12.0 0.0 1.7 1 1 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 4HB_MCP_1 PF12729.2 gi|284165780|ref|YP_003404059.1| - 0.065 12.5 0.3 1 8.6 0.0 2.4 2 0 0 2 2 2 0 Four helix bundle sensory module for signal transduction Cellulase PF00150.13 gi|284165781|ref|YP_003404060.1| - 6.4e-22 78.0 0.0 1.1e-21 77.3 0.0 1.4 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) DUF1083 PF06452.6 gi|284165781|ref|YP_003404060.1| - 2e-19 70.1 0.9 3.5e-19 69.3 0.6 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1083) fn3 PF00041.16 gi|284165781|ref|YP_003404060.1| - 9.3e-12 44.9 0.1 2.6e-11 43.5 0.0 1.8 1 0 0 1 1 1 1 Fibronectin type III domain DUF2442 PF10387.4 gi|284165781|ref|YP_003404060.1| - 0.052 13.5 0.0 2.5 8.1 0.0 3.5 4 0 0 4 4 4 0 Protein of unknown function (DUF2442) LEA_2 PF03168.8 gi|284165782|ref|YP_003404061.1| - 2.4e-10 40.6 0.2 6.5e-08 32.8 0.0 2.4 2 0 0 2 2 2 2 Late embryogenesis abundant protein DUF4307 PF14155.1 gi|284165782|ref|YP_003404061.1| - 0.031 14.0 1.2 0.1 12.3 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4307) HTH_24 PF13412.1 gi|284165783|ref|YP_003404062.1| - 0.00021 20.6 0.0 0.00042 19.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|284165783|ref|YP_003404062.1| - 0.00043 19.8 0.0 0.00093 18.7 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|284165783|ref|YP_003404062.1| - 0.00096 18.7 0.0 0.0029 17.2 0.0 1.8 1 0 0 1 1 1 1 MarR family SpoIIIAH PF12685.2 gi|284165783|ref|YP_003404062.1| - 0.0021 17.6 4.2 0.056 12.9 0.1 2.2 2 0 0 2 2 2 2 SpoIIIAH-like protein Chorion_2 PF03964.10 gi|284165783|ref|YP_003404062.1| - 0.028 14.9 0.2 0.028 14.9 0.1 1.8 2 0 0 2 2 2 0 Chorion family 2 RskA PF10099.4 gi|284165783|ref|YP_003404062.1| - 0.044 13.5 11.4 0.32 10.7 2.1 2.5 2 0 0 2 2 2 0 Anti-sigma-K factor rskA DUF977 PF06163.6 gi|284165783|ref|YP_003404062.1| - 0.075 12.7 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) DUF2782 PF11191.3 gi|284165783|ref|YP_003404062.1| - 0.45 10.5 3.7 28 4.7 0.0 3.5 3 1 0 3 3 3 0 Protein of unknown function (DUF2782) PepSY_TM_2 PF13703.1 gi|284165783|ref|YP_003404062.1| - 0.75 10.0 2.6 18 5.6 0.0 2.3 2 0 0 2 2 2 0 PepSY-associated TM helix Lactamase_B PF00753.22 gi|284165784|ref|YP_003404063.1| - 4.5e-27 94.9 6.4 6.2e-27 94.5 4.4 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|284165784|ref|YP_003404063.1| - 3.3e-05 23.4 0.6 7.7e-05 22.3 0.4 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|284165784|ref|YP_003404063.1| - 0.0026 17.5 0.1 0.0037 16.9 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain ABC_tran PF00005.22 gi|284165785|ref|YP_003404064.1| - 2.2e-34 118.6 0.0 3.4e-34 118.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284165785|ref|YP_003404064.1| - 7.5e-11 42.5 0.0 3.7e-06 27.1 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|284165785|ref|YP_003404064.1| - 4.3e-05 23.6 0.2 0.00023 21.3 0.1 1.9 1 1 0 1 1 1 1 AAA domain TOBE_2 PF08402.5 gi|284165785|ref|YP_003404064.1| - 6.9e-05 22.7 3.3 0.0014 18.6 0.0 3.3 2 1 1 3 3 3 1 TOBE domain SMC_N PF02463.14 gi|284165785|ref|YP_003404064.1| - 0.00022 20.5 0.0 0.069 12.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|284165785|ref|YP_003404064.1| - 0.00049 20.3 0.2 0.013 15.6 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|284165785|ref|YP_003404064.1| - 0.001 19.0 4.3 0.011 15.7 3.0 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|284165785|ref|YP_003404064.1| - 0.0012 18.3 0.2 0.0078 15.6 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|284165785|ref|YP_003404064.1| - 0.0013 17.8 0.0 0.049 12.6 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_30 PF13604.1 gi|284165785|ref|YP_003404064.1| - 0.0069 15.9 0.1 0.022 14.3 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|284165785|ref|YP_003404064.1| - 0.0075 15.7 0.0 0.018 14.5 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|284165785|ref|YP_003404064.1| - 0.015 15.6 0.0 0.03 14.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|284165785|ref|YP_003404064.1| - 0.015 15.2 0.0 0.04 13.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|284165785|ref|YP_003404064.1| - 0.016 15.4 0.0 0.071 13.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|284165785|ref|YP_003404064.1| - 0.032 14.1 0.2 0.25 11.2 0.1 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_19 PF13245.1 gi|284165785|ref|YP_003404064.1| - 0.037 13.7 1.1 0.25 11.1 0.1 2.6 2 0 0 2 2 2 0 Part of AAA domain Zeta_toxin PF06414.7 gi|284165785|ref|YP_003404064.1| - 0.043 12.9 0.1 0.18 10.8 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin Rad17 PF03215.10 gi|284165785|ref|YP_003404064.1| - 0.073 11.7 0.0 0.1 11.2 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_14 PF13173.1 gi|284165785|ref|YP_003404064.1| - 0.11 12.4 0.0 0.56 10.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|284165785|ref|YP_003404064.1| - 0.11 12.3 2.2 0.21 11.4 0.3 2.4 2 1 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|284165785|ref|YP_003404064.1| - 0.18 12.6 2.8 0.56 11.0 1.9 2.2 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|284165785|ref|YP_003404064.1| - 0.21 10.3 0.0 0.34 9.7 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain BPD_transp_1 PF00528.17 gi|284165786|ref|YP_003404065.1| - 6.4e-28 97.5 39.9 5.6e-16 58.5 10.0 2.8 3 0 0 3 3 3 2 Binding-protein-dependent transport system inner membrane component DUF3464 PF11947.3 gi|284165786|ref|YP_003404065.1| - 0.54 9.7 5.3 3.2 7.2 2.9 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3464) E1-E2_ATPase PF00122.15 gi|284165786|ref|YP_003404065.1| - 7.4 5.5 9.3 2.3 7.1 2.9 2.6 2 1 0 2 2 2 0 E1-E2 ATPase SBP_bac_6 PF13343.1 gi|284165787|ref|YP_003404066.1| - 7e-23 81.2 0.0 1e-22 80.6 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|284165787|ref|YP_003404066.1| - 5.2e-17 62.4 0.2 6.6e-17 62.1 0.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|284165787|ref|YP_003404066.1| - 0.00027 20.7 1.4 0.00037 20.3 1.0 1.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|284165787|ref|YP_003404066.1| - 0.0028 17.3 0.0 0.0038 16.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein PRT_C PF08372.5 gi|284165787|ref|YP_003404066.1| - 0.13 11.7 0.1 0.23 10.9 0.1 1.3 1 0 0 1 1 1 0 Plant phosphoribosyltransferase C-terminal KorB PF08535.5 gi|284165788|ref|YP_003404067.1| - 0.0052 16.9 0.1 3.6 7.7 0.1 2.4 2 0 0 2 2 2 2 KorB domain HATPase_c PF02518.21 gi|284165790|ref|YP_003404069.1| - 3.4e-14 52.4 0.0 6.2e-14 51.6 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|284165790|ref|YP_003404069.1| - 4.1e-14 52.3 0.8 4.1e-14 52.3 0.5 1.9 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|284165790|ref|YP_003404069.1| - 8.3e-11 41.9 0.8 2.5e-10 40.3 0.5 1.9 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|284165790|ref|YP_003404069.1| - 6.5e-08 32.8 0.0 1.2e-07 32.0 0.0 1.5 1 0 0 1 1 1 1 PAS domain PAS_8 PF13188.1 gi|284165790|ref|YP_003404069.1| - 1.6e-06 27.7 0.1 7.6e-06 25.6 0.1 2.2 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|284165790|ref|YP_003404069.1| - 4.1e-06 26.5 0.1 1e-05 25.2 0.0 1.7 1 1 0 1 1 1 1 PAS fold PAS_7 PF12860.2 gi|284165790|ref|YP_003404069.1| - 0.0041 17.1 0.2 0.15 12.0 0.1 2.4 1 1 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.1 gi|284165790|ref|YP_003404069.1| - 0.013 15.2 0.0 0.028 14.2 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain SPOB_a PF14689.1 gi|284165790|ref|YP_003404069.1| - 0.035 13.6 0.1 0.071 12.6 0.1 1.5 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain NYD-SP28 PF14772.1 gi|284165790|ref|YP_003404069.1| - 0.091 12.8 0.6 0.15 12.2 0.4 1.2 1 0 0 1 1 1 0 Sperm tail Transposase_28 PF04195.7 gi|284165790|ref|YP_003404069.1| - 0.16 11.2 2.3 0.27 10.5 1.6 1.3 1 0 0 1 1 1 0 Putative gypsy type transposon Titin_Z PF09042.6 gi|284165790|ref|YP_003404069.1| - 3.4 7.3 4.8 47 3.6 1.8 2.5 2 0 0 2 2 2 0 Titin Z DNA_ligase_A_M PF01068.16 gi|284165791|ref|YP_003404070.1| - 9.3e-13 47.9 0.0 1.8e-12 47.0 0.0 1.4 1 0 0 1 1 1 1 ATP dependent DNA ligase domain RNA_ligase PF09414.5 gi|284165791|ref|YP_003404070.1| - 7e-06 25.9 0.0 0.00068 19.4 0.0 2.3 1 1 0 1 1 1 1 RNA ligase UPF0278 PF08745.6 gi|284165792|ref|YP_003404071.1| - 1.2e-74 250.0 0.2 1.4e-74 249.8 0.1 1.0 1 0 0 1 1 1 1 UPF0278 family Sod_Fe_C PF02777.13 gi|284165793|ref|YP_003404072.1| - 3.3e-36 123.3 0.2 5e-36 122.7 0.1 1.2 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.17 gi|284165793|ref|YP_003404072.1| - 8.3e-31 106.0 0.8 1.7e-30 105.0 0.6 1.5 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain NDK PF00334.14 gi|284165795|ref|YP_003404074.1| - 1.9e-52 176.6 0.0 2.1e-52 176.4 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase Ribosomal_L24e PF01246.15 gi|284165796|ref|YP_003404075.1| - 4.6e-23 80.8 0.0 6.5e-23 80.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L24e Nop14 PF04147.7 gi|284165796|ref|YP_003404075.1| - 9.8 3.9 16.2 9.4 4.0 11.2 1.0 1 0 0 1 1 1 0 Nop14-like family Ribosomal_S28e PF01200.13 gi|284165797|ref|YP_003404076.1| - 1.3e-28 98.5 1.0 1.3e-28 98.4 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L7Ae PF01248.21 gi|284165798|ref|YP_003404077.1| - 5.1e-25 86.8 0.0 6.1e-25 86.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.1 gi|284165798|ref|YP_003404077.1| - 5.6e-05 22.8 0.0 8e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 PELOTA RNA binding domain eRF1_3 PF03465.10 gi|284165798|ref|YP_003404077.1| - 0.044 14.0 0.1 0.091 13.0 0.0 1.7 1 1 0 1 1 1 0 eRF1 domain 3 DGC PF08859.6 gi|284165799|ref|YP_003404078.1| - 2.9e-35 120.4 0.1 3.3e-35 120.2 0.1 1.0 1 0 0 1 1 1 1 DGC domain Amidohydro_4 PF13147.1 gi|284165799|ref|YP_003404078.1| - 0.073 13.0 0.0 0.082 12.9 0.0 1.1 1 0 0 1 1 1 0 Amidohydrolase Oxidored_molyb PF00174.14 gi|284165800|ref|YP_003404079.1| - 4.2e-31 107.6 0.0 5.2e-31 107.3 0.0 1.0 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Glyoxalase_2 PF12681.2 gi|284165801|ref|YP_003404080.1| - 1e-06 29.2 0.1 3.6e-06 27.5 0.1 1.9 1 1 0 1 1 1 1 Glyoxalase-like domain DUF1510 PF07423.6 gi|284165802|ref|YP_003404081.1| - 0.0014 18.0 0.1 0.0022 17.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1510) TFIIF_alpha PF05793.7 gi|284165802|ref|YP_003404081.1| - 7.4 4.8 18.1 11 4.2 12.5 1.2 1 0 0 1 1 1 0 Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) GNAT_acetyltr_2 PF13718.1 gi|284165803|ref|YP_003404082.1| - 5e-51 172.8 0.0 8.3e-51 172.1 0.0 1.4 1 0 0 1 1 1 1 GNAT acetyltransferase 2 Helicase_RecD PF05127.9 gi|284165803|ref|YP_003404082.1| - 5e-48 163.0 0.0 7.9e-48 162.4 0.0 1.3 1 0 0 1 1 1 1 Helicase DUF1726 PF08351.6 gi|284165803|ref|YP_003404082.1| - 1.2e-22 79.4 0.0 6e-21 73.9 0.0 2.9 3 0 0 3 3 3 1 Domain of unknown function (DUF1726) tRNA_bind_2 PF13725.1 gi|284165803|ref|YP_003404082.1| - 3.2e-12 46.4 0.0 6.6e-12 45.4 0.0 1.5 1 0 0 1 1 1 1 Possible tRNA binding domain AAA_30 PF13604.1 gi|284165803|ref|YP_003404082.1| - 6e-07 29.2 0.9 2.6e-06 27.1 0.6 2.2 2 0 0 2 2 2 1 AAA domain Acetyltransf_7 PF13508.1 gi|284165803|ref|YP_003404082.1| - 0.00013 22.0 0.0 0.00025 21.1 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|284165803|ref|YP_003404082.1| - 0.039 13.9 0.0 0.14 12.2 0.0 2.0 1 0 0 1 1 1 0 Acetyltransferase (GNAT) family AAA_22 PF13401.1 gi|284165803|ref|YP_003404082.1| - 0.072 13.2 0.0 0.18 11.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain Acetyltransf_13 PF13880.1 gi|284165803|ref|YP_003404082.1| - 0.085 12.6 0.0 0.2 11.4 0.0 1.6 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase Aminotran_5 PF00266.14 gi|284165804|ref|YP_003404083.1| - 2.8e-20 72.4 0.0 3.2e-20 72.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|284165804|ref|YP_003404083.1| - 0.0041 16.1 0.0 0.0092 14.9 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class I and II adh_short PF00106.20 gi|284165805|ref|YP_003404084.1| - 1e-21 77.5 3.7 1.4e-21 77.1 2.5 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|284165805|ref|YP_003404084.1| - 4.9e-11 42.8 0.0 6.7e-11 42.4 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|284165805|ref|YP_003404084.1| - 3.1e-09 36.7 2.6 6.2e-09 35.7 1.8 1.5 1 1 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|284165805|ref|YP_003404084.1| - 9.8e-08 31.7 0.3 1.9e-07 30.7 0.2 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|284165805|ref|YP_003404084.1| - 8.3e-06 25.9 1.3 2e-05 24.6 0.9 1.7 1 1 0 1 1 1 1 NADH(P)-binding 3Beta_HSD PF01073.14 gi|284165805|ref|YP_003404084.1| - 0.00046 18.9 0.0 0.00065 18.4 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family F420_oxidored PF03807.12 gi|284165805|ref|YP_003404084.1| - 0.014 15.8 1.7 0.1 13.0 0.9 2.4 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|284165805|ref|YP_003404084.1| - 0.044 13.5 0.0 0.077 12.7 0.0 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Eno-Rase_NADH_b PF12242.3 gi|284165805|ref|YP_003404084.1| - 0.045 13.5 1.5 0.074 12.8 0.1 2.0 2 0 0 2 2 2 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase RmlD_sub_bind PF04321.12 gi|284165805|ref|YP_003404084.1| - 0.046 12.6 0.2 0.074 11.9 0.2 1.3 1 0 0 1 1 1 0 RmlD substrate binding domain ApbA PF02558.11 gi|284165805|ref|YP_003404084.1| - 0.11 11.8 0.0 0.26 10.7 0.0 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA DUF1328 PF07043.8 gi|284165805|ref|YP_003404084.1| - 0.26 11.2 2.6 3.5 7.6 0.4 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1328) DUF456 PF04306.8 gi|284165806|ref|YP_003404085.1| - 3.4e-25 88.7 28.4 3.4e-25 88.7 19.7 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF456) HILPDA PF15220.1 gi|284165806|ref|YP_003404085.1| - 0.057 13.4 1.4 0.096 12.6 0.2 2.0 2 0 0 2 2 2 0 Hypoxia-inducible lipid droplet-associated HypA PF01155.14 gi|284165807|ref|YP_003404086.1| - 5.9e-05 22.7 1.0 7.5e-05 22.3 0.7 1.2 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DUF35_N PF12172.3 gi|284165807|ref|YP_003404086.1| - 0.00011 21.9 5.0 0.00017 21.4 3.4 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) NOB1_Zn_bind PF08772.6 gi|284165807|ref|YP_003404086.1| - 0.00045 20.0 0.4 0.00068 19.4 0.2 1.4 1 1 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like DUF2072 PF09845.4 gi|284165807|ref|YP_003404086.1| - 0.00047 20.0 3.3 0.00063 19.6 2.3 1.2 1 0 0 1 1 1 1 Zn-ribbon containing protein (DUF2072) Zn-ribbon_8 PF09723.5 gi|284165807|ref|YP_003404086.1| - 0.0012 18.7 7.4 0.015 15.2 5.1 2.3 1 1 0 1 1 1 1 Zinc ribbon domain DZR PF12773.2 gi|284165807|ref|YP_003404086.1| - 0.0015 18.3 1.8 0.0025 17.6 1.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon FYVE PF01363.16 gi|284165807|ref|YP_003404086.1| - 0.0081 16.0 0.2 0.0093 15.8 0.2 1.2 1 0 0 1 1 1 1 FYVE zinc finger FdhE PF04216.7 gi|284165807|ref|YP_003404086.1| - 0.0092 15.7 0.3 0.0099 15.6 0.2 1.2 1 0 0 1 1 1 1 Protein involved in formate dehydrogenase formation zinc-ribbons_6 PF07191.7 gi|284165807|ref|YP_003404086.1| - 0.024 14.4 0.8 0.035 13.9 0.6 1.2 1 0 0 1 1 1 0 zinc-ribbons DNA_ligase_ZBD PF03119.11 gi|284165807|ref|YP_003404086.1| - 0.027 14.1 5.1 0.27 10.9 0.3 2.7 2 1 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DUF3279 PF11682.3 gi|284165807|ref|YP_003404086.1| - 0.033 13.7 0.2 0.042 13.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3279) TF_Zn_Ribbon PF08271.7 gi|284165807|ref|YP_003404086.1| - 0.034 13.4 0.5 0.62 9.4 0.1 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding Ribosomal_L37e PF01907.14 gi|284165807|ref|YP_003404086.1| - 0.036 13.8 1.1 0.053 13.3 0.7 1.3 1 0 0 1 1 1 0 Ribosomal protein L37e zf-C3HC4_3 PF13920.1 gi|284165807|ref|YP_003404086.1| - 0.043 13.4 1.0 0.057 13.0 0.7 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-RING_3 PF14369.1 gi|284165807|ref|YP_003404086.1| - 0.058 13.4 5.2 0.77 9.8 3.6 2.3 1 1 0 1 1 1 0 zinc-finger DUF1178 PF06676.6 gi|284165807|ref|YP_003404086.1| - 0.077 13.1 1.6 0.083 13.0 0.7 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1178) TFIIS_C PF01096.13 gi|284165807|ref|YP_003404086.1| - 0.085 12.5 1.7 9.1 6.0 0.1 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zinc_ribbon_6 PF14599.1 gi|284165807|ref|YP_003404086.1| - 0.088 12.6 0.1 0.14 11.9 0.1 1.4 1 0 0 1 1 1 0 Zinc-ribbon NRDD PF13597.1 gi|284165807|ref|YP_003404086.1| - 0.12 10.4 1.7 0.16 10.0 1.2 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Zn_Tnp_IS1 PF03811.8 gi|284165807|ref|YP_003404086.1| - 0.39 10.2 4.0 8.3 6.0 0.1 2.3 2 0 0 2 2 2 0 InsA N-terminal domain Zn_Tnp_IS1595 PF12760.2 gi|284165807|ref|YP_003404086.1| - 0.67 9.8 5.3 2.8 7.8 1.2 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|284165807|ref|YP_003404086.1| - 0.73 9.1 3.2 0.48 9.7 0.4 1.8 1 1 1 2 2 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|284165807|ref|YP_003404086.1| - 0.96 8.9 4.2 1.9 8.0 2.9 1.5 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Trypan_PARP PF05887.6 gi|284165807|ref|YP_003404086.1| - 2 8.2 7.6 2.3 8.0 5.2 1.2 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) zf-HIT PF04438.11 gi|284165807|ref|YP_003404086.1| - 2.1 8.0 6.1 5.1 6.8 2.4 2.1 1 1 1 2 2 2 0 HIT zinc finger zf-IS66 PF13005.2 gi|284165807|ref|YP_003404086.1| - 2.6 8.0 7.1 3.2 7.8 0.2 2.5 2 1 0 2 2 2 0 zinc-finger binding domain of transposase IS66 tRNA-synt_1c PF00749.16 gi|284165808|ref|YP_003404087.1| - 9.7e-58 195.2 0.0 1.2e-57 194.9 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|284165808|ref|YP_003404087.1| - 1.4e-19 70.3 0.0 2.8e-19 69.4 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain polyprenyl_synt PF00348.12 gi|284165809|ref|YP_003404088.1| - 3e-60 203.2 0.6 4e-60 202.8 0.4 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase Lactamase_B PF00753.22 gi|284165810|ref|YP_003404089.1| - 2e-12 47.1 1.7 3.6e-12 46.3 0.7 1.9 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|284165810|ref|YP_003404089.1| - 1.3e-08 34.5 0.4 3.7e-07 29.8 0.1 2.2 2 0 0 2 2 2 1 Beta-lactamase superfamily domain RMMBL PF07521.7 gi|284165810|ref|YP_003404089.1| - 2.7e-05 23.9 1.9 4.3e-05 23.2 0.4 2.1 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase AA_kinase PF00696.23 gi|284165811|ref|YP_003404090.1| - 4.6e-35 121.2 4.0 5.5e-35 121.0 2.8 1.0 1 0 0 1 1 1 1 Amino acid kinase family Smr PF01713.16 gi|284165811|ref|YP_003404090.1| - 0.43 10.8 2.1 3.2 7.9 0.5 2.8 3 1 0 3 3 3 0 Smr domain GHMP_kinases_C PF08544.8 gi|284165812|ref|YP_003404091.1| - 4.4e-16 58.8 0.4 4.4e-16 58.8 0.3 1.9 2 0 0 2 2 2 1 GHMP kinases C terminal GHMP_kinases_N PF00288.21 gi|284165812|ref|YP_003404091.1| - 2.4e-14 53.1 0.3 4.9e-14 52.1 0.2 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GalKase_gal_bdg PF10509.4 gi|284165812|ref|YP_003404091.1| - 0.00071 18.8 0.0 0.0013 17.9 0.0 1.5 1 0 0 1 1 1 1 Galactokinase galactose-binding signature Aldolase_2 PF10120.4 gi|284165813|ref|YP_003404092.1| - 1.9e-47 160.7 0.2 2.6e-47 160.3 0.2 1.2 1 0 0 1 1 1 1 Putative aldolase HTH_3 PF01381.17 gi|284165813|ref|YP_003404092.1| - 7.1e-08 32.1 0.2 9.6e-07 28.5 0.1 2.3 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.1 gi|284165813|ref|YP_003404092.1| - 2.4e-06 27.6 2.5 0.0003 20.9 0.1 2.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|284165813|ref|YP_003404092.1| - 2.2e-05 23.9 0.0 8.4e-05 22.0 0.0 2.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|284165813|ref|YP_003404092.1| - 0.00012 21.5 0.0 0.00059 19.4 0.0 2.2 2 0 0 2 2 2 1 Homeodomain-like domain HTH_26 PF13443.1 gi|284165813|ref|YP_003404092.1| - 0.00018 21.6 0.0 0.0004 20.5 0.0 1.5 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_19 PF12844.2 gi|284165813|ref|YP_003404092.1| - 0.00026 21.0 0.0 0.0019 18.2 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|284165813|ref|YP_003404092.1| - 0.00035 20.3 0.0 0.0029 17.3 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|284165813|ref|YP_003404092.1| - 0.00036 20.1 0.3 0.014 15.0 0.0 2.8 2 0 0 2 2 2 1 MarR family Sigma70_r4 PF04545.11 gi|284165813|ref|YP_003404092.1| - 0.00054 19.2 0.1 0.0028 16.9 0.0 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|284165813|ref|YP_003404092.1| - 0.0016 17.7 0.1 0.0043 16.4 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding RepB PF07506.6 gi|284165813|ref|YP_003404092.1| - 0.0029 17.4 0.0 0.0065 16.3 0.0 1.5 1 0 0 1 1 1 1 RepB plasmid partitioning protein LacI PF00356.16 gi|284165813|ref|YP_003404092.1| - 0.0088 15.6 0.1 3.2 7.4 0.0 2.6 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family HTH_11 PF08279.7 gi|284165813|ref|YP_003404092.1| - 0.012 15.1 0.0 0.029 14.0 0.0 1.6 1 0 0 1 1 1 0 HTH domain Sigma70_r4_2 PF08281.7 gi|284165813|ref|YP_003404092.1| - 0.017 14.5 0.1 0.044 13.2 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 DUF3486 PF11985.3 gi|284165813|ref|YP_003404092.1| - 0.018 15.1 0.0 1 9.4 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3486) KorB PF08535.5 gi|284165813|ref|YP_003404092.1| - 0.019 15.0 0.0 0.058 13.5 0.0 1.8 1 0 0 1 1 1 0 KorB domain MarR PF01047.17 gi|284165813|ref|YP_003404092.1| - 0.039 13.6 0.0 0.11 12.2 0.0 1.7 1 0 0 1 1 1 0 MarR family HTH_28 PF13518.1 gi|284165813|ref|YP_003404092.1| - 0.069 13.1 0.0 0.26 11.3 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain Cro PF09048.5 gi|284165813|ref|YP_003404092.1| - 0.074 12.7 0.3 0.25 11.0 0.1 1.9 2 0 0 2 2 2 0 Cro Ribosomal_S2 PF00318.15 gi|284165815|ref|YP_003404094.1| - 1.6e-37 128.8 0.0 7.2e-19 67.8 0.2 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 Enolase_C PF00113.17 gi|284165816|ref|YP_003404095.1| - 2.3e-76 256.6 0.2 3.2e-76 256.1 0.1 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|284165816|ref|YP_003404095.1| - 2.4e-38 131.0 0.3 5.2e-38 129.9 0.2 1.6 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE PF01188.16 gi|284165816|ref|YP_003404095.1| - 0.00045 20.6 1.0 0.00074 20.0 0.0 1.9 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MAAL_C PF07476.6 gi|284165816|ref|YP_003404095.1| - 0.00085 18.3 0.0 0.0017 17.3 0.0 1.4 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus MR_MLE_C PF13378.1 gi|284165816|ref|YP_003404095.1| - 0.0054 16.6 0.4 0.023 14.6 0.0 2.2 3 0 0 3 3 3 1 Enolase C-terminal domain-like RNA_pol_Rpb6 PF01192.17 gi|284165817|ref|YP_003404096.1| - 5e-19 67.7 0.0 5.4e-19 67.6 0.0 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb6 RNA_pol_N PF01194.12 gi|284165818|ref|YP_003404097.1| - 6.1e-30 103.0 0.2 6.6e-30 102.9 0.1 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Ribosomal_S9 PF00380.14 gi|284165819|ref|YP_003404098.1| - 7.4e-38 129.5 0.1 8.4e-38 129.3 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 F_bP_aldolase PF01116.15 gi|284165819|ref|YP_003404098.1| - 0.062 12.4 0.0 0.066 12.3 0.0 1.1 1 0 0 1 1 1 0 Fructose-bisphosphate aldolase class-II Ribosomal_L13 PF00572.13 gi|284165820|ref|YP_003404099.1| - 1.3e-22 80.2 0.0 1.6e-22 79.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L13 Ribosomal_L18e PF00828.14 gi|284165821|ref|YP_003404100.1| - 7.3e-14 52.2 0.1 9.5e-14 51.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 RNA_pol_A_bac PF01000.21 gi|284165822|ref|YP_003404101.1| - 4.4e-20 71.9 0.0 1.8e-19 69.9 0.0 1.9 1 1 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|284165822|ref|YP_003404101.1| - 1.7e-14 52.6 0.0 2.1e-14 52.3 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Ribosomal_S11 PF00411.14 gi|284165823|ref|YP_003404102.1| - 3.6e-42 143.0 0.5 4.1e-42 142.8 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S11 S4 PF01479.20 gi|284165824|ref|YP_003404103.1| - 4.6e-10 38.7 2.3 5.2e-10 38.5 0.2 1.9 2 0 0 2 2 2 1 S4 domain Ribosomal_S4 PF00163.14 gi|284165824|ref|YP_003404103.1| - 0.0045 17.3 0.9 0.0087 16.4 0.3 1.7 1 1 1 2 2 2 1 Ribosomal protein S4/S9 N-terminal domain Ribosomal_S13 PF00416.17 gi|284165825|ref|YP_003404104.1| - 1.1e-33 115.9 1.9 1.4e-33 115.5 1.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 FbpA PF05833.6 gi|284165825|ref|YP_003404104.1| - 0.017 13.6 0.2 0.018 13.6 0.1 1.2 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) CarboxypepD_reg PF13620.1 gi|284165826|ref|YP_003404105.1| - 0.001 19.0 0.3 0.22 11.5 0.1 2.4 2 0 0 2 2 2 2 Carboxypeptidase regulatory-like domain TAT_signal PF10518.4 gi|284165826|ref|YP_003404105.1| - 0.25 11.4 2.2 0.47 10.5 1.5 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence AMP-binding PF00501.23 gi|284165827|ref|YP_003404106.1| - 8.2e-89 297.8 0.0 1e-88 297.5 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme Mob_synth_C PF06463.8 gi|284165828|ref|YP_003404107.1| - 5.4e-32 110.1 0.0 9.1e-32 109.4 0.0 1.4 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Radical_SAM PF04055.16 gi|284165828|ref|YP_003404107.1| - 4.7e-24 85.4 0.0 3.1e-23 82.7 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|284165828|ref|YP_003404107.1| - 2.4e-08 34.0 0.0 6e-08 32.7 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|284165828|ref|YP_003404107.1| - 4.9e-07 29.9 0.0 1.2e-06 28.6 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Cytochrome_C7 PF14522.1 gi|284165828|ref|YP_003404107.1| - 0.059 13.0 0.4 10 5.8 0.0 2.3 2 0 0 2 2 2 0 Cytochrome c7 Cytochrom_C PF00034.16 gi|284165828|ref|YP_003404107.1| - 0.12 13.1 0.1 21 5.9 0.0 2.9 3 1 0 3 3 3 0 Cytochrome c LTV PF04180.9 gi|284165829|ref|YP_003404108.1| - 1.2 8.5 4.8 1.3 8.4 3.3 1.0 1 0 0 1 1 1 0 Low temperature viability protein AAA_16 PF13191.1 gi|284165830|ref|YP_003404109.1| - 7e-12 45.7 0.1 1.2e-10 41.6 0.0 2.5 2 1 0 2 2 2 1 AAA ATPase domain Cdc6_C PF09079.6 gi|284165830|ref|YP_003404109.1| - 1.1e-11 44.2 0.0 2.5e-11 43.1 0.0 1.7 1 0 0 1 1 1 1 CDC6, C terminal AAA PF00004.24 gi|284165830|ref|YP_003404109.1| - 1.6e-10 41.2 0.0 3.9e-10 40.0 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|284165830|ref|YP_003404109.1| - 1.4e-08 34.9 0.0 3.2e-08 33.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.8 gi|284165830|ref|YP_003404109.1| - 7.2e-06 25.1 0.0 1.2e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) NACHT PF05729.7 gi|284165830|ref|YP_003404109.1| - 0.00058 19.5 0.0 0.0011 18.6 0.0 1.5 1 0 0 1 1 1 1 NACHT domain AAA_17 PF13207.1 gi|284165830|ref|YP_003404109.1| - 0.0033 18.2 0.0 0.0094 16.7 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|284165830|ref|YP_003404109.1| - 0.0062 16.2 0.0 0.037 13.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) RNA_helicase PF00910.17 gi|284165830|ref|YP_003404109.1| - 0.016 15.3 0.0 0.063 13.4 0.0 2.0 2 0 0 2 2 2 0 RNA helicase AAA_32 PF13654.1 gi|284165830|ref|YP_003404109.1| - 0.022 13.4 0.1 0.83 8.2 0.1 2.1 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|284165830|ref|YP_003404109.1| - 0.023 14.9 0.4 0.14 12.4 0.0 2.3 2 2 1 3 3 3 0 ABC transporter Sigma54_activat PF00158.21 gi|284165830|ref|YP_003404109.1| - 0.024 14.1 0.0 0.042 13.3 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain Arch_ATPase PF01637.13 gi|284165830|ref|YP_003404109.1| - 0.028 14.1 0.0 0.064 12.9 0.0 1.6 2 0 0 2 2 2 0 Archaeal ATPase AAA_25 PF13481.1 gi|284165830|ref|YP_003404109.1| - 0.045 13.1 1.5 0.45 9.8 0.1 2.8 2 1 0 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|284165830|ref|YP_003404109.1| - 0.057 12.5 0.0 0.098 11.8 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Rad17 PF03215.10 gi|284165830|ref|YP_003404109.1| - 0.19 10.3 0.0 0.51 8.9 0.0 1.7 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein RtcB PF01139.12 gi|284165831|ref|YP_003404110.1| - 4.4e-148 493.7 0.2 5e-148 493.5 0.1 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB DoxX PF07681.7 gi|284165832|ref|YP_003404111.1| - 6.6e-08 32.8 7.6 6.6e-08 32.8 5.3 3.9 3 1 0 3 3 3 2 DoxX DoxX_3 PF13781.1 gi|284165832|ref|YP_003404111.1| - 0.16 12.3 19.3 0.16 12.3 0.7 3.3 2 1 1 3 3 3 0 DoxX-like family DoxD PF04173.8 gi|284165832|ref|YP_003404111.1| - 1.7 8.3 11.2 8.4 6.0 1.4 3.5 3 1 0 3 3 3 0 TQO small subunit DoxD Archease PF01951.11 gi|284165833|ref|YP_003404112.1| - 1e-25 90.2 0.0 1.2e-25 90.0 0.0 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) Acetyltransf_10 PF13673.1 gi|284165834|ref|YP_003404113.1| - 1.2e-13 51.2 0.0 1.5e-13 50.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|284165834|ref|YP_003404113.1| - 2e-13 50.1 0.0 4e-13 49.1 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|284165834|ref|YP_003404113.1| - 5.3e-13 48.9 0.0 8.9e-13 48.2 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|284165834|ref|YP_003404113.1| - 1e-09 38.0 0.0 1.6e-09 37.3 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|284165834|ref|YP_003404113.1| - 1.3e-05 25.1 0.1 1.8e-05 24.6 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|284165834|ref|YP_003404113.1| - 0.0003 20.7 0.0 0.00054 19.9 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|284165834|ref|YP_003404113.1| - 0.0037 17.2 0.1 0.0085 16.0 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|284165834|ref|YP_003404113.1| - 0.0045 16.8 0.0 0.016 15.0 0.0 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|284165834|ref|YP_003404113.1| - 0.012 15.4 0.0 0.021 14.6 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.1 gi|284165834|ref|YP_003404113.1| - 0.055 13.6 0.0 0.083 13.0 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF619 PF04768.8 gi|284165834|ref|YP_003404113.1| - 0.1 12.0 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF619) NTS_2 PF15448.1 gi|284165834|ref|YP_003404113.1| - 0.6 10.4 5.4 1.3 9.4 2.5 2.2 1 1 1 2 2 2 0 N-terminal segments of P. falciparum erythrocyte membrane protein DNA_primase_S PF01896.14 gi|284165835|ref|YP_003404114.1| - 3.5e-23 82.0 0.0 6.8e-23 81.0 0.0 1.5 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit Sld5 PF05916.6 gi|284165836|ref|YP_003404115.1| - 0.016 15.4 0.0 0.026 14.8 0.0 1.3 1 0 0 1 1 1 0 GINS complex protein Mac PF12464.3 gi|284165837|ref|YP_003404116.1| - 1.1e-22 79.7 0.1 3.4e-22 78.1 0.0 1.7 2 0 0 2 2 2 1 Maltose acetyltransferase Hexapep PF00132.19 gi|284165837|ref|YP_003404116.1| - 4.3e-14 51.2 11.0 1.7e-09 36.7 2.1 3.4 3 1 0 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|284165837|ref|YP_003404116.1| - 1e-13 50.6 12.2 7.5e-11 41.4 1.2 3.6 4 0 0 4 4 4 2 Hexapeptide repeat of succinyl-transferase DUF3601 PF12208.3 gi|284165837|ref|YP_003404116.1| - 0.13 12.2 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3601) AhpC-TSA PF00578.16 gi|284165838|ref|YP_003404117.1| - 2.6e-35 120.8 0.0 3.1e-35 120.5 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|284165838|ref|YP_003404117.1| - 3.5e-19 68.7 0.0 4.2e-19 68.5 0.0 1.1 1 0 0 1 1 1 1 Redoxin DUF899 PF05988.7 gi|284165838|ref|YP_003404117.1| - 0.00027 20.4 0.0 0.00034 20.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) SCO1-SenC PF02630.9 gi|284165838|ref|YP_003404117.1| - 0.00037 20.1 0.0 0.00098 18.7 0.0 1.6 1 1 0 1 1 1 1 SCO1/SenC AhpC-TSA_2 PF13911.1 gi|284165838|ref|YP_003404117.1| - 0.003 17.4 0.0 0.0054 16.6 0.0 1.4 1 1 1 2 2 2 1 AhpC/TSA antioxidant enzyme DUF3885 PF13021.1 gi|284165838|ref|YP_003404117.1| - 0.048 13.3 0.1 0.47 10.1 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3885) Fibrinogen_aC PF12160.3 gi|284165838|ref|YP_003404117.1| - 0.063 12.7 0.1 0.14 11.6 0.1 1.5 1 0 0 1 1 1 0 Fibrinogen alpha C domain MFS_1 PF07690.11 gi|284165839|ref|YP_003404118.1| - 2.4e-32 112.0 52.7 6.6e-32 110.5 30.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily PQQ_2 PF13360.1 gi|284165840|ref|YP_003404119.1| - 4.1e-27 95.1 10.2 1.8e-21 76.7 3.3 3.2 2 1 1 3 3 3 3 PQQ-like domain PQQ PF01011.16 gi|284165840|ref|YP_003404119.1| - 2.3e-18 64.7 8.7 0.00032 20.0 0.1 6.0 5 0 0 5 5 5 5 PQQ enzyme repeat PQQ_3 PF13570.1 gi|284165840|ref|YP_003404119.1| - 8.8e-15 54.4 30.5 0.0018 18.4 0.1 7.3 7 0 0 7 7 7 5 PQQ-like domain AAA PF00004.24 gi|284165841|ref|YP_003404120.1| - 7.9e-101 333.4 0.0 1.3e-49 167.7 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|284165841|ref|YP_003404120.1| - 6.6e-24 83.6 0.1 5.3e-23 80.7 0.1 2.4 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.9 gi|284165841|ref|YP_003404120.1| - 5.1e-17 62.3 0.2 3.6e-08 33.5 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|284165841|ref|YP_003404120.1| - 8e-16 57.7 0.0 7.1e-08 31.7 0.0 2.7 3 0 0 3 3 2 2 Holliday junction DNA helicase ruvB N-terminus CDC48_2 PF02933.12 gi|284165841|ref|YP_003404120.1| - 2e-15 56.1 0.1 5.7e-15 54.7 0.1 1.8 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.1 gi|284165841|ref|YP_003404120.1| - 8.8e-15 55.1 0.1 1.3e-07 31.7 0.0 3.1 2 1 0 2 2 2 2 AAA ATPase domain AAA_17 PF13207.1 gi|284165841|ref|YP_003404120.1| - 5.2e-12 46.6 1.3 0.00015 22.5 0.6 3.2 2 1 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|284165841|ref|YP_003404120.1| - 5.7e-12 45.9 0.3 0.00064 19.8 0.0 4.0 2 2 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|284165841|ref|YP_003404120.1| - 8.2e-12 45.2 0.0 3.4e-05 23.7 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|284165841|ref|YP_003404120.1| - 6.3e-11 42.1 1.3 0.0003 20.5 0.1 4.5 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.8 gi|284165841|ref|YP_003404120.1| - 3.3e-10 39.2 0.0 0.00019 20.2 0.0 2.3 2 0 0 2 2 2 2 TIP49 C-terminus AAA_14 PF13173.1 gi|284165841|ref|YP_003404120.1| - 5.5e-10 39.2 0.0 0.00025 20.9 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|284165841|ref|YP_003404120.1| - 1.5e-09 37.4 0.1 0.002 17.8 0.0 2.9 2 0 0 2 2 2 2 Part of AAA domain Zeta_toxin PF06414.7 gi|284165841|ref|YP_003404120.1| - 2.2e-09 36.6 0.0 0.00085 18.4 0.0 3.0 3 0 0 3 3 3 2 Zeta toxin IstB_IS21 PF01695.12 gi|284165841|ref|YP_003404120.1| - 1.2e-08 34.6 0.1 0.0012 18.3 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|284165841|ref|YP_003404120.1| - 1.9e-08 34.4 0.0 0.0045 17.1 0.0 2.7 2 0 0 2 2 2 2 RNA helicase DUF815 PF05673.8 gi|284165841|ref|YP_003404120.1| - 6.3e-08 31.8 0.0 0.00051 19.0 0.0 2.8 2 1 0 2 2 2 2 Protein of unknown function (DUF815) NACHT PF05729.7 gi|284165841|ref|YP_003404120.1| - 1.7e-07 31.0 0.1 0.41 10.2 0.0 4.3 3 1 0 4 4 4 2 NACHT domain Mg_chelatase PF01078.16 gi|284165841|ref|YP_003404120.1| - 3.4e-07 29.6 0.3 0.011 14.9 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_25 PF13481.1 gi|284165841|ref|YP_003404120.1| - 3.5e-07 29.8 9.0 0.074 12.4 0.1 4.5 2 2 1 4 4 4 3 AAA domain AAA_18 PF13238.1 gi|284165841|ref|YP_003404120.1| - 6.3e-07 29.7 0.0 0.039 14.2 0.0 3.3 3 0 0 3 3 2 2 AAA domain AAA_3 PF07726.6 gi|284165841|ref|YP_003404120.1| - 6.3e-07 29.0 0.0 0.012 15.2 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.1 gi|284165841|ref|YP_003404120.1| - 9.9e-07 28.8 0.0 0.023 14.6 0.0 2.6 2 0 0 2 2 2 2 AAA domain NB-ARC PF00931.17 gi|284165841|ref|YP_003404120.1| - 2e-06 26.9 0.0 0.027 13.3 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain Arch_ATPase PF01637.13 gi|284165841|ref|YP_003404120.1| - 2.4e-06 27.4 0.1 0.3 10.7 0.0 3.7 2 2 1 3 3 3 2 Archaeal ATPase ABC_tran PF00005.22 gi|284165841|ref|YP_003404120.1| - 3.1e-06 27.5 0.0 0.067 13.4 0.0 2.7 2 0 0 2 2 2 2 ABC transporter PhoH PF02562.11 gi|284165841|ref|YP_003404120.1| - 4.4e-06 26.0 0.1 0.031 13.5 0.0 2.4 2 0 0 2 2 2 2 PhoH-like protein KaiC PF06745.8 gi|284165841|ref|YP_003404120.1| - 1.2e-05 24.5 0.2 0.19 10.8 0.0 3.5 2 1 1 3 3 3 2 KaiC Sigma54_activat PF00158.21 gi|284165841|ref|YP_003404120.1| - 1.5e-05 24.5 0.1 0.18 11.2 0.0 3.1 3 1 0 3 3 2 2 Sigma-54 interaction domain DUF2075 PF09848.4 gi|284165841|ref|YP_003404120.1| - 3.4e-05 23.0 0.0 0.14 11.0 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_11 PF13086.1 gi|284165841|ref|YP_003404120.1| - 3.5e-05 23.4 0.0 0.23 11.0 0.0 2.4 2 0 0 2 2 2 2 AAA domain Sigma54_activ_2 PF14532.1 gi|284165841|ref|YP_003404120.1| - 4e-05 23.6 0.0 0.2 11.7 0.0 2.7 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_24 PF13479.1 gi|284165841|ref|YP_003404120.1| - 5e-05 22.9 0.0 0.065 12.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.1 gi|284165841|ref|YP_003404120.1| - 9e-05 22.1 0.0 0.2 11.1 0.0 2.6 2 0 0 2 2 2 2 AAA domain NTPase_1 PF03266.10 gi|284165841|ref|YP_003404120.1| - 0.00018 21.2 1.3 0.54 9.9 0.0 4.0 2 2 1 3 3 3 1 NTPase UPF0079 PF02367.12 gi|284165841|ref|YP_003404120.1| - 0.00023 20.7 0.0 0.36 10.4 0.0 2.4 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 Parvo_NS1 PF01057.12 gi|284165841|ref|YP_003404120.1| - 0.00035 19.5 0.1 0.51 9.1 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 Bac_DnaA PF00308.13 gi|284165841|ref|YP_003404120.1| - 0.00042 20.0 0.0 0.22 11.1 0.0 2.7 2 1 0 2 2 2 1 Bacterial dnaA protein T2SE PF00437.15 gi|284165841|ref|YP_003404120.1| - 0.0006 18.7 0.0 0.51 9.1 0.0 2.3 2 0 0 2 2 2 2 Type II/IV secretion system protein ATP-synt_ab PF00006.20 gi|284165841|ref|YP_003404120.1| - 0.0035 16.8 0.0 0.84 9.0 0.0 2.6 2 1 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain ResIII PF04851.10 gi|284165841|ref|YP_003404120.1| - 0.0044 16.8 0.0 2.6 7.8 0.0 2.6 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit AFG1_ATPase PF03969.11 gi|284165841|ref|YP_003404120.1| - 0.022 13.5 0.0 3.9 6.1 0.0 2.7 3 0 0 3 3 2 0 AFG1-like ATPase SKI PF01202.17 gi|284165841|ref|YP_003404120.1| - 0.037 13.8 0.0 6.1 6.6 0.0 2.6 2 0 0 2 2 2 0 Shikimate kinase KTI12 PF08433.5 gi|284165841|ref|YP_003404120.1| - 0.044 12.9 0.0 8.6 5.4 0.0 2.4 2 0 0 2 2 2 0 Chromatin associated protein KTI12 KAP_NTPase PF07693.9 gi|284165841|ref|YP_003404120.1| - 0.054 12.4 0.0 5.8 5.7 0.0 2.8 2 1 0 2 2 2 0 KAP family P-loop domain HJURP_C PF12347.3 gi|284165841|ref|YP_003404120.1| - 0.055 13.0 0.7 0.21 11.2 0.5 1.9 1 0 0 1 1 1 0 Holliday junction regulator protein family C-terminal repeat DEAD PF00270.24 gi|284165841|ref|YP_003404120.1| - 0.071 12.5 2.0 19 4.6 0.1 3.6 2 2 1 4 4 4 0 DEAD/DEAH box helicase Vps4_C PF09336.5 gi|284165841|ref|YP_003404120.1| - 0.077 12.8 0.1 8.9 6.2 0.0 2.8 2 0 0 2 2 2 0 Vps4 C terminal oligomerisation domain Torsin PF06309.6 gi|284165841|ref|YP_003404120.1| - 0.095 12.5 0.0 4.9 7.0 0.0 2.4 2 0 0 2 2 2 0 Torsin PIF1 PF05970.9 gi|284165841|ref|YP_003404120.1| - 0.13 11.1 0.0 8.7 5.1 0.0 2.6 3 0 0 3 3 3 0 PIF1-like helicase Viral_helicase1 PF01443.13 gi|284165841|ref|YP_003404120.1| - 0.17 11.3 0.0 13 5.2 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Cytidylate_kin2 PF13189.1 gi|284165841|ref|YP_003404120.1| - 0.23 11.3 1.5 22 4.8 0.0 2.9 3 0 0 3 3 3 0 Cytidylate kinase-like family UMPH-1 PF05822.7 gi|284165842|ref|YP_003404121.1| - 0.0078 15.5 0.1 0.0078 15.5 0.1 1.1 1 0 0 1 1 1 1 Pyrimidine 5'-nucleotidase (UMPH-1) Abhydrolase_6 PF12697.2 gi|284165843|ref|YP_003404122.1| - 1.5e-34 119.8 8.3 1.7e-34 119.6 5.8 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|284165843|ref|YP_003404122.1| - 2.7e-17 63.1 1.9 5.6e-16 58.8 1.3 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|284165843|ref|YP_003404122.1| - 8.3e-17 61.2 1.6 4e-16 59.0 1.1 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_4 PF08386.5 gi|284165843|ref|YP_003404122.1| - 0.007 16.2 0.0 0.036 13.9 0.0 2.0 2 0 0 2 2 2 1 TAP-like protein PGAP1 PF07819.8 gi|284165843|ref|YP_003404122.1| - 0.0097 15.5 0.3 0.17 11.4 0.1 2.8 2 1 0 2 2 2 1 PGAP1-like protein Hydrolase_4 PF12146.3 gi|284165843|ref|YP_003404122.1| - 0.015 15.1 0.1 0.031 14.1 0.1 1.6 1 0 0 1 1 1 0 Putative lysophospholipase FSH1 PF03959.8 gi|284165843|ref|YP_003404122.1| - 0.082 12.3 0.0 0.2 11.0 0.0 1.7 2 0 0 2 2 2 0 Serine hydrolase (FSH1) Esterase PF00756.15 gi|284165843|ref|YP_003404122.1| - 0.12 11.7 0.0 0.24 10.7 0.0 1.5 1 0 0 1 1 1 0 Putative esterase Pantoate_transf PF02548.10 gi|284165844|ref|YP_003404123.1| - 1.5e-103 345.4 0.8 1.7e-103 345.3 0.6 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.1 gi|284165844|ref|YP_003404123.1| - 1.4e-05 24.4 0.5 1.4e-05 24.4 0.4 1.5 2 0 0 2 2 2 1 Phosphoenolpyruvate phosphomutase Amidohydro_2 PF04909.9 gi|284165844|ref|YP_003404123.1| - 0.037 13.5 0.2 0.098 12.2 0.1 1.6 1 1 0 1 1 1 0 Amidohydrolase HAD_2 PF13419.1 gi|284165846|ref|YP_003404125.1| - 3.8e-13 50.0 0.3 3.3e-12 46.9 0.2 1.9 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|284165846|ref|YP_003404125.1| - 1.6e-07 31.9 0.3 1.3e-05 25.7 0.0 2.3 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|284165846|ref|YP_003404125.1| - 3.7e-06 26.5 0.0 9e-06 25.3 0.0 1.7 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.2 gi|284165846|ref|YP_003404125.1| - 0.00031 20.9 0.1 0.00042 20.5 0.1 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Acyl-CoA_dh_1 PF00441.19 gi|284165847|ref|YP_003404126.1| - 3.7e-50 169.9 5.4 5.6e-50 169.3 3.7 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|284165847|ref|YP_003404126.1| - 2.2e-32 111.9 0.4 2.2e-32 111.9 0.3 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|284165847|ref|YP_003404126.1| - 3.5e-22 79.1 6.0 6.8e-22 78.1 4.1 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|284165847|ref|YP_003404126.1| - 6.5e-21 73.6 0.0 1.6e-20 72.3 0.0 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_ox_N PF14749.1 gi|284165847|ref|YP_003404126.1| - 0.11 12.7 0.0 0.45 10.8 0.0 1.8 2 0 0 2 2 2 0 Acyl-coenzyme A oxidase N-terminal TAT_signal PF10518.4 gi|284165848|ref|YP_003404127.1| - 0.0081 16.0 0.5 0.017 15.0 0.3 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence TAT_signal PF10518.4 gi|284165849|ref|YP_003404128.1| - 0.0045 16.8 0.2 0.011 15.7 0.1 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence DUF2951 PF11166.3 gi|284165849|ref|YP_003404128.1| - 0.011 15.5 0.1 0.011 15.5 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2951) DHDPS PF00701.17 gi|284165850|ref|YP_003404129.1| - 9.4e-75 250.8 0.0 1.1e-74 250.7 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family HTH_10 PF04967.7 gi|284165851|ref|YP_003404130.1| - 5.6e-19 67.4 0.1 8.8e-19 66.8 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain UPF0122 PF04297.9 gi|284165851|ref|YP_003404130.1| - 0.0016 18.4 0.0 0.0031 17.4 0.0 1.4 1 0 0 1 1 1 1 Putative helix-turn-helix protein, YlxM / p13 like Sigma70_r3 PF04539.11 gi|284165851|ref|YP_003404130.1| - 0.0023 17.7 0.8 0.0064 16.3 0.6 1.8 1 0 0 1 1 1 1 Sigma-70 region 3 Sigma70_r4 PF04545.11 gi|284165851|ref|YP_003404130.1| - 0.0025 17.0 0.3 0.0053 16.0 0.2 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|284165851|ref|YP_003404130.1| - 0.0049 16.5 0.2 0.014 15.0 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|284165851|ref|YP_003404130.1| - 0.005 16.2 0.0 0.012 15.0 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF4250 PF14056.1 gi|284165851|ref|YP_003404130.1| - 0.048 13.3 0.3 0.17 11.6 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4250) HTH_AsnC-type PF13404.1 gi|284165851|ref|YP_003404130.1| - 0.054 13.0 0.2 0.15 11.6 0.2 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_30 PF13556.1 gi|284165851|ref|YP_003404130.1| - 0.097 12.2 0.1 0.23 11.0 0.0 1.6 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_11 PF08279.7 gi|284165851|ref|YP_003404130.1| - 0.13 11.9 0.1 0.48 10.0 0.0 1.9 2 0 0 2 2 2 0 HTH domain Hydrolase_3 PF08282.7 gi|284165852|ref|YP_003404131.1| - 1.8e-09 37.5 0.0 0.00029 20.4 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|284165852|ref|YP_003404131.1| - 1.1e-05 25.7 0.4 0.00023 21.4 0.3 2.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase ADH_N PF08240.7 gi|284165853|ref|YP_003404132.1| - 3e-08 33.4 0.0 4.5e-08 32.8 0.0 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|284165853|ref|YP_003404132.1| - 5e-05 22.8 0.0 8.5e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Pribosyltran PF00156.22 gi|284165854|ref|YP_003404133.1| - 1e-21 76.9 0.1 1.7e-21 76.2 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_23 PF13384.1 gi|284165854|ref|YP_003404133.1| - 0.00057 19.4 0.0 0.0016 18.0 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_7 PF02796.10 gi|284165854|ref|YP_003404133.1| - 0.0073 16.1 0.0 0.014 15.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_11 PF08279.7 gi|284165854|ref|YP_003404133.1| - 0.009 15.6 0.1 0.061 12.9 0.1 2.2 2 0 0 2 2 2 1 HTH domain HTH_28 PF13518.1 gi|284165854|ref|YP_003404133.1| - 0.0091 15.9 0.0 0.15 12.0 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain GerE PF00196.14 gi|284165854|ref|YP_003404133.1| - 0.02 14.1 0.0 0.043 13.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.11 gi|284165854|ref|YP_003404133.1| - 0.042 13.1 0.0 0.08 12.2 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 PRTase_2 PF15609.1 gi|284165854|ref|YP_003404133.1| - 0.046 13.0 0.1 0.23 10.7 0.0 1.9 2 0 0 2 2 2 0 Phosphoribosyl transferase HTH_24 PF13412.1 gi|284165854|ref|YP_003404133.1| - 0.057 12.8 0.0 0.11 11.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|284165854|ref|YP_003404133.1| - 0.12 12.0 0.0 0.43 10.2 0.0 1.9 2 0 0 2 2 2 0 MarR family TAT_signal PF10518.4 gi|284165855|ref|YP_003404134.1| - 0.37 10.9 3.3 0.49 10.5 2.3 1.2 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence GETHR PF05671.6 gi|284165855|ref|YP_003404134.1| - 0.4 9.8 4.4 11 5.2 3.0 2.5 1 1 0 1 1 1 0 GETHR pentapeptide repeat (5 copies) Herpes_LMP1 PF05297.6 gi|284165855|ref|YP_003404134.1| - 0.53 9.1 14.1 0.61 8.9 9.8 1.1 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) TMCO5 PF14992.1 gi|284165855|ref|YP_003404134.1| - 2.2 7.3 5.0 2.5 7.1 3.5 1.0 1 0 0 1 1 1 0 TMCO5 family DUF4399 PF14347.1 gi|284165856|ref|YP_003404135.1| - 4.6e-19 68.2 0.0 6.8e-19 67.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4399) TAT_signal PF10518.4 gi|284165856|ref|YP_003404135.1| - 0.055 13.4 0.1 0.086 12.8 0.1 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence TFIIB PF00382.14 gi|284165857|ref|YP_003404136.1| - 1.7e-48 162.2 3.5 1.2e-25 89.1 0.2 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|284165857|ref|YP_003404136.1| - 4.1e-19 67.6 3.4 7.9e-19 66.7 2.3 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding HTH_23 PF13384.1 gi|284165857|ref|YP_003404136.1| - 0.0081 15.7 0.4 0.59 9.8 0.0 3.3 3 0 0 3 3 3 1 Homeodomain-like domain RRN7 PF11781.3 gi|284165857|ref|YP_003404136.1| - 0.013 14.9 0.6 0.027 13.9 0.4 1.5 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 A2L_zn_ribbon PF08792.5 gi|284165857|ref|YP_003404136.1| - 0.015 14.7 0.6 0.035 13.5 0.4 1.6 1 0 0 1 1 1 0 A2L zinc ribbon domain HARE-HTH PF05066.8 gi|284165857|ref|YP_003404136.1| - 0.021 15.1 0.1 1.5 9.2 0.1 2.4 2 0 0 2 2 2 0 HB1, ASXL, restriction endonuclease HTH domain Cyclin_N PF00134.18 gi|284165857|ref|YP_003404136.1| - 0.035 13.6 0.0 0.26 10.8 0.0 2.1 1 1 1 2 2 2 0 Cyclin, N-terminal domain PhnA_Zn_Ribbon PF08274.7 gi|284165857|ref|YP_003404136.1| - 0.073 12.8 2.0 0.16 11.7 1.4 1.5 1 0 0 1 1 1 0 PhnA Zinc-Ribbon Sigma70_r4 PF04545.11 gi|284165857|ref|YP_003404136.1| - 0.084 12.2 3.2 0.3 10.4 0.0 3.3 3 1 0 3 3 3 0 Sigma-70, region 4 RVT_3 PF13456.1 gi|284165858|ref|YP_003404137.1| - 1.9e-20 72.4 0.0 2.8e-20 71.8 0.0 1.3 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.19 gi|284165858|ref|YP_003404137.1| - 2e-12 47.5 0.0 3.3e-12 46.8 0.0 1.3 1 0 0 1 1 1 1 RNase H Homeobox PF00046.24 gi|284165859|ref|YP_003404138.1| - 0.076 12.6 0.1 0.18 11.4 0.1 1.7 1 0 0 1 1 1 0 Homeobox domain Phage_int_SAM_4 PF13495.1 gi|284165859|ref|YP_003404138.1| - 0.086 13.1 0.0 0.13 12.5 0.0 1.3 1 0 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain DUF3269 PF11673.3 gi|284165859|ref|YP_003404138.1| - 0.088 13.2 0.0 0.21 12.0 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3269) Glyco_hydro_48 PF02011.10 gi|284165859|ref|YP_003404138.1| - 0.089 10.9 0.0 0.1 10.6 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 48 PadR PF03551.9 gi|284165860|ref|YP_003404139.1| - 1.1e-16 60.3 0.5 1.6e-16 59.7 0.4 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|284165860|ref|YP_003404139.1| - 5.3e-07 29.8 0.1 2e-06 28.0 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain DUF1495 PF07381.6 gi|284165860|ref|YP_003404139.1| - 0.005 16.4 0.0 0.0087 15.7 0.0 1.5 1 1 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.1 gi|284165860|ref|YP_003404139.1| - 0.013 15.3 0.0 0.023 14.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix RTP PF02334.11 gi|284165860|ref|YP_003404139.1| - 0.055 13.4 0.0 0.074 13.0 0.0 1.2 1 0 0 1 1 1 0 Replication terminator protein Rio2_N PF09202.6 gi|284165860|ref|YP_003404139.1| - 0.13 12.3 0.2 0.2 11.7 0.1 1.3 1 0 0 1 1 1 0 Rio2, N-terminal Pyrophosphatase PF00719.14 gi|284165861|ref|YP_003404140.1| - 5.6e-55 185.0 1.8 6.4e-55 184.8 1.2 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase TarH PF02203.10 gi|284165861|ref|YP_003404140.1| - 0.087 12.6 0.6 0.12 12.2 0.4 1.1 1 0 0 1 1 1 0 Tar ligand binding domain homologue Phosphodiest PF01663.17 gi|284165863|ref|YP_003404142.1| - 1.5e-62 212.0 0.0 1.7e-62 211.8 0.0 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.18 gi|284165863|ref|YP_003404142.1| - 0.013 14.6 1.1 0.058 12.5 0.1 2.2 2 0 0 2 2 2 0 Sulfatase Metalloenzyme PF01676.13 gi|284165863|ref|YP_003404142.1| - 0.019 14.3 0.1 0.037 13.4 0.1 1.5 1 0 0 1 1 1 0 Metalloenzyme superfamily DUF371 PF04027.8 gi|284165864|ref|YP_003404143.1| - 5.5e-50 168.4 0.0 6.2e-50 168.2 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) PAS_9 PF13426.1 gi|284165865|ref|YP_003404144.1| - 3.3e-37 127.0 0.3 4.8e-14 52.5 0.0 4.0 3 0 0 3 3 3 3 PAS domain MEDS PF14417.1 gi|284165865|ref|YP_003404144.1| - 2.1e-33 114.9 2.9 2.5e-33 114.7 0.1 2.5 3 0 0 3 3 3 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain HATPase_c PF02518.21 gi|284165865|ref|YP_003404144.1| - 4.5e-29 100.4 0.0 1.4e-28 98.7 0.0 2.0 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|284165865|ref|YP_003404144.1| - 5.3e-29 100.4 9.6 4.9e-11 42.6 1.4 4.5 4 1 0 4 4 3 3 PAS fold PAS PF00989.19 gi|284165865|ref|YP_003404144.1| - 7.9e-27 93.2 7.1 3.1e-10 39.8 0.0 4.9 4 1 0 4 4 3 3 PAS fold PAS_8 PF13188.1 gi|284165865|ref|YP_003404144.1| - 2.7e-21 74.6 0.1 2e-09 36.9 0.0 4.3 3 0 0 3 3 3 3 PAS domain GAF_3 PF13492.1 gi|284165865|ref|YP_003404144.1| - 6.6e-21 74.7 0.0 2.1e-07 31.1 0.0 4.7 4 0 0 4 4 4 4 GAF domain PAS_3 PF08447.6 gi|284165865|ref|YP_003404144.1| - 1.3e-10 41.2 3.6 3.1e-05 23.9 0.0 4.7 5 1 0 5 5 4 2 PAS fold GAF_2 PF13185.1 gi|284165865|ref|YP_003404144.1| - 1.1e-08 35.7 4.1 0.014 15.9 0.0 5.3 6 0 0 6 6 5 2 GAF domain HisKA PF00512.20 gi|284165865|ref|YP_003404144.1| - 2.1e-08 34.0 0.1 2.1e-08 34.0 0.0 3.9 4 1 1 5 5 4 1 His Kinase A (phospho-acceptor) domain GAF PF01590.21 gi|284165865|ref|YP_003404144.1| - 2.2e-07 31.1 0.0 0.0067 16.5 0.0 3.1 2 0 0 2 2 2 2 GAF domain HATPase_c_5 PF14501.1 gi|284165865|ref|YP_003404144.1| - 0.00022 20.8 0.0 0.00048 19.7 0.0 1.5 1 0 0 1 1 1 1 GHKL domain KaiC PF06745.8 gi|284165865|ref|YP_003404144.1| - 0.002 17.3 0.2 0.0089 15.1 0.0 2.2 2 0 0 2 2 2 1 KaiC Radical_SAM PF04055.16 gi|284165865|ref|YP_003404144.1| - 0.0083 16.3 0.3 11 6.0 0.0 4.1 4 0 0 4 4 4 0 Radical SAM superfamily HATPase_c_3 PF13589.1 gi|284165865|ref|YP_003404144.1| - 0.023 14.3 0.0 0.055 13.1 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_11 PF14598.1 gi|284165865|ref|YP_003404144.1| - 0.067 13.1 0.0 1.5 8.7 0.0 2.4 2 0 0 2 2 2 0 PAS domain ApoLp-III PF07464.6 gi|284165865|ref|YP_003404144.1| - 0.49 10.4 2.8 0.58 10.1 0.0 2.6 3 0 0 3 3 1 0 Apolipophorin-III precursor (apoLp-III) Med21 PF11221.3 gi|284165865|ref|YP_003404144.1| - 9 6.2 8.2 3 7.8 0.8 3.0 3 0 0 3 3 3 0 Subunit 21 of Mediator complex HhH-GPD PF00730.20 gi|284165866|ref|YP_003404145.1| - 1.8e-16 60.3 0.0 3.1e-16 59.5 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|284165866|ref|YP_003404145.1| - 2.7e-05 23.6 0.0 6e-05 22.5 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.4 gi|284165866|ref|YP_003404145.1| - 3.7e-05 23.7 6.9 8.3e-05 22.6 4.8 1.6 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_5 PF14520.1 gi|284165866|ref|YP_003404145.1| - 0.12 12.5 0.0 0.5 10.5 0.0 1.7 1 1 0 1 1 1 0 Helix-hairpin-helix domain Phage_Coat_Gp8 PF05371.7 gi|284165867|ref|YP_003404146.1| - 0.031 13.8 0.4 0.1 12.1 0.3 1.9 1 0 0 1 1 1 0 Phage major coat protein, Gp8 DUF1459 PF07312.6 gi|284165867|ref|YP_003404146.1| - 0.033 14.1 0.4 0.075 12.9 0.3 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1459) DUF1191 PF06697.7 gi|284165867|ref|YP_003404146.1| - 0.04 12.7 0.0 0.04 12.7 0.0 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF1191) Beta-Casp PF10996.3 gi|284165869|ref|YP_003404148.1| - 3.4e-33 114.2 0.0 6.3e-33 113.3 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|284165869|ref|YP_003404148.1| - 3.8e-23 82.1 2.4 7.1e-23 81.2 1.7 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|284165869|ref|YP_003404148.1| - 3.4e-13 49.1 0.0 1.3e-12 47.3 0.0 2.0 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|284165869|ref|YP_003404148.1| - 8.3e-12 45.0 0.1 1.9e-11 43.8 0.1 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.12 gi|284165869|ref|YP_003404148.1| - 6e-08 32.1 0.0 1.2e-06 27.9 0.0 2.4 2 0 0 2 2 2 1 KH domain Lactamase_B_3 PF13483.1 gi|284165869|ref|YP_003404148.1| - 5.7e-05 22.8 0.0 0.00013 21.7 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_1 PF00013.24 gi|284165869|ref|YP_003404148.1| - 0.00048 19.7 0.2 0.0024 17.4 0.0 2.3 2 0 0 2 2 2 1 KH domain KH_4 PF13083.1 gi|284165869|ref|YP_003404148.1| - 0.0077 15.8 0.0 0.019 14.5 0.0 1.6 1 0 0 1 1 1 1 KH domain KH_3 PF13014.1 gi|284165869|ref|YP_003404148.1| - 0.15 11.7 0.2 0.39 10.4 0.1 1.7 1 0 0 1 1 1 0 KH domain TFIIA PF03153.8 gi|284165871|ref|YP_003404150.1| - 0.56 10.0 23.1 0.68 9.7 16.0 1.1 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit ARGLU PF15346.1 gi|284165871|ref|YP_003404150.1| - 0.79 9.4 16.0 0.028 14.1 2.5 2.1 2 0 0 2 2 2 0 Arginine and glutamate-rich 1 ABC_tran_2 PF12848.2 gi|284165871|ref|YP_003404150.1| - 4.5 7.1 10.8 1.3 8.9 2.1 2.2 2 0 0 2 2 2 0 ABC transporter DUF4207 PF13904.1 gi|284165871|ref|YP_003404150.1| - 6.2 6.1 11.9 1.5 8.1 0.6 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4207) OmpH PF03938.9 gi|284165871|ref|YP_003404150.1| - 6.5 6.6 15.0 0.44 10.4 1.9 2.1 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) DUF91 PF01939.11 gi|284165872|ref|YP_003404151.1| - 1.5e-64 217.2 0.0 1.6e-63 213.9 0.0 1.9 1 1 0 1 1 1 1 Protein of unknown function DUF91 IF2_assoc PF08364.6 gi|284165872|ref|YP_003404151.1| - 0.1 12.6 0.1 0.18 11.8 0.1 1.3 1 0 0 1 1 1 0 Bacterial translation initiation factor IF-2 associated region DUF2766 PF10964.3 gi|284165873|ref|YP_003404152.1| - 0.011 15.5 0.3 0.023 14.5 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2766) DUF1859 PF08948.5 gi|284165873|ref|YP_003404152.1| - 0.092 12.4 0.1 0.22 11.2 0.0 1.7 2 1 0 2 2 2 0 Domain of unknown function (DUF1859) MFS_1 PF07690.11 gi|284165874|ref|YP_003404153.1| - 2e-40 138.6 49.5 1.6e-37 129.0 30.8 2.1 1 1 0 2 2 2 2 Major Facilitator Superfamily EF1_GNE PF00736.14 gi|284165875|ref|YP_003404154.1| - 5.6e-21 74.0 0.0 5.9e-21 73.9 0.0 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain DUF1610 PF07754.6 gi|284165876|ref|YP_003404155.1| - 1e-09 38.2 15.2 6.8e-05 22.8 3.1 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) zf-Mss51 PF13824.1 gi|284165876|ref|YP_003404155.1| - 0.00056 19.6 11.0 0.2 11.5 3.6 2.9 1 1 1 2 2 2 2 Zinc-finger of mitochondrial splicing suppressor 51 DZR PF12773.2 gi|284165876|ref|YP_003404155.1| - 0.0043 16.8 1.6 0.0043 16.8 1.1 2.4 1 1 1 2 2 2 1 Double zinc ribbon PolC_DP2 PF03833.8 gi|284165876|ref|YP_003404155.1| - 0.0078 13.9 7.0 0.0084 13.8 4.9 1.0 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 DUF2039 PF10217.4 gi|284165876|ref|YP_003404155.1| - 0.0087 16.0 6.3 0.013 15.4 4.4 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2039) C1_3 PF07649.7 gi|284165876|ref|YP_003404155.1| - 0.021 14.8 11.1 0.85 9.7 2.6 2.6 1 1 2 3 3 3 0 C1-like domain OrfB_Zn_ribbon PF07282.6 gi|284165876|ref|YP_003404155.1| - 0.021 14.4 10.2 0.064 12.9 4.2 2.3 1 1 1 2 2 2 0 Putative transposase DNA-binding domain DNA_RNApol_7kD PF03604.8 gi|284165876|ref|YP_003404155.1| - 0.039 13.4 10.6 1.1 8.8 0.6 3.4 2 2 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Prok-RING_1 PF14446.1 gi|284165876|ref|YP_003404155.1| - 0.043 13.5 10.3 1.5 8.5 4.6 2.2 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 C1_1 PF00130.17 gi|284165876|ref|YP_003404155.1| - 0.047 13.4 9.5 0.06 13.0 0.4 2.4 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF2387 PF09526.5 gi|284165876|ref|YP_003404155.1| - 0.058 13.3 10.9 0.46 10.4 0.1 2.4 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) zf-MYND PF01753.13 gi|284165876|ref|YP_003404155.1| - 0.071 12.9 6.9 0.38 10.6 2.5 2.2 1 1 1 2 2 2 0 MYND finger zf-UBP PF02148.14 gi|284165876|ref|YP_003404155.1| - 0.14 12.2 1.2 0.14 12.2 0.9 2.3 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein NMD3 PF04981.8 gi|284165876|ref|YP_003404155.1| - 0.2 10.7 8.8 0.24 10.4 6.1 1.0 1 0 0 1 1 1 0 NMD3 family C1_2 PF03107.11 gi|284165876|ref|YP_003404155.1| - 0.22 11.6 8.1 9.5 6.4 0.2 3.0 1 1 1 2 2 2 0 C1 domain zf-RING_5 PF14634.1 gi|284165876|ref|YP_003404155.1| - 0.31 10.8 10.4 1.6 8.5 0.7 2.3 2 0 0 2 2 2 0 zinc-RING finger domain zinc_ribbon_2 PF13240.1 gi|284165876|ref|YP_003404155.1| - 0.41 10.2 0.2 0.41 10.2 0.2 3.8 2 2 0 3 3 3 0 zinc-ribbon domain zf-C2H2 PF00096.21 gi|284165876|ref|YP_003404155.1| - 0.45 10.9 18.0 2.4 8.6 0.4 3.9 4 0 0 4 4 4 0 Zinc finger, C2H2 type NMDAR2_C PF10565.4 gi|284165876|ref|YP_003404155.1| - 0.48 9.0 6.9 0.51 8.9 4.8 1.0 1 0 0 1 1 1 0 N-methyl D-aspartate receptor 2B3 C-terminus zf-HIT PF04438.11 gi|284165876|ref|YP_003404155.1| - 0.49 10.0 17.5 1.4 8.6 1.9 3.5 1 1 1 2 2 2 0 HIT zinc finger zf-ribbon_3 PF13248.1 gi|284165876|ref|YP_003404155.1| - 0.53 9.5 15.9 0.28 10.4 2.5 3.4 1 1 1 2 2 2 0 zinc-ribbon domain FYVE_2 PF02318.11 gi|284165876|ref|YP_003404155.1| - 0.54 10.1 6.5 0.61 10.0 4.5 1.1 1 0 0 1 1 1 0 FYVE-type zinc finger RNHCP PF12647.2 gi|284165876|ref|YP_003404155.1| - 0.56 10.0 9.4 0.94 9.3 3.6 2.2 1 1 1 2 2 2 0 RNHCP domain DNA_ligase_ZBD PF03119.11 gi|284165876|ref|YP_003404155.1| - 0.62 9.8 7.5 0.68 9.6 0.3 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain A2L_zn_ribbon PF08792.5 gi|284165876|ref|YP_003404155.1| - 0.69 9.4 14.3 2.4 7.7 2.7 3.6 1 1 1 2 2 2 0 A2L zinc ribbon domain Zn-ribbon_8 PF09723.5 gi|284165876|ref|YP_003404155.1| - 0.79 9.7 19.0 6 6.9 9.3 3.8 1 1 2 3 3 3 0 Zinc ribbon domain Zn_Tnp_IS91 PF14319.1 gi|284165876|ref|YP_003404155.1| - 0.92 9.0 10.6 1.6 8.2 7.4 1.5 1 1 0 1 1 1 0 Transposase zinc-binding domain zf-UBR PF02207.15 gi|284165876|ref|YP_003404155.1| - 0.92 9.2 11.5 37 4.1 8.0 2.5 1 1 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) Zn_Tnp_IS1595 PF12760.2 gi|284165876|ref|YP_003404155.1| - 1 9.2 20.0 1.7e+02 2.1 13.9 3.6 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-C2HC5 PF06221.8 gi|284165876|ref|YP_003404155.1| - 1.1 9.1 11.1 0.47 10.2 3.9 2.1 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type Sgf11 PF08209.6 gi|284165876|ref|YP_003404155.1| - 1.2 8.4 16.2 1.9 7.8 0.8 3.9 2 1 2 4 4 4 0 Sgf11 (transcriptional regulation protein) zinc-ribbons_6 PF07191.7 gi|284165876|ref|YP_003404155.1| - 1.3 8.9 11.0 1.4 8.7 0.6 2.2 1 1 1 2 2 2 0 zinc-ribbons zf-C2H2_6 PF13912.1 gi|284165876|ref|YP_003404155.1| - 1.3 9.0 10.2 19 5.3 0.6 3.3 3 0 0 3 3 3 0 C2H2-type zinc finger IBR PF01485.16 gi|284165876|ref|YP_003404155.1| - 1.3 8.9 11.0 10 6.1 7.6 2.1 1 1 0 1 1 1 0 IBR domain HypA PF01155.14 gi|284165876|ref|YP_003404155.1| - 1.3 8.6 10.8 0.21 11.2 0.6 2.1 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family DUF1272 PF06906.6 gi|284165876|ref|YP_003404155.1| - 1.4 8.8 11.0 5.6 6.8 7.6 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) UPF0547 PF10571.4 gi|284165876|ref|YP_003404155.1| - 1.5 8.5 14.6 1 9.1 6.8 3.1 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 TFIIS_C PF01096.13 gi|284165876|ref|YP_003404155.1| - 1.5 8.4 16.2 3.1 7.5 0.4 4.1 2 1 2 4 4 4 0 Transcription factor S-II (TFIIS) C1_4 PF07975.7 gi|284165876|ref|YP_003404155.1| - 1.7 8.7 12.0 53 3.9 8.2 2.7 1 1 0 1 1 1 0 TFIIH C1-like domain PhnA_Zn_Ribbon PF08274.7 gi|284165876|ref|YP_003404155.1| - 2.1 8.2 0.1 2.1 8.2 0.1 3.2 2 1 1 3 3 2 0 PhnA Zinc-Ribbon DUF2296 PF10058.4 gi|284165876|ref|YP_003404155.1| - 2.3 8.0 12.4 9.9 6.0 0.9 3.5 1 1 2 3 3 3 0 Predicted integral membrane metal-binding protein (DUF2296) Ribosomal_L37ae PF01780.14 gi|284165876|ref|YP_003404155.1| - 3.3 7.6 8.6 3.3 7.6 3.2 2.7 1 1 1 2 2 2 0 Ribosomal L37ae protein family Nudix_N_2 PF14803.1 gi|284165876|ref|YP_003404155.1| - 4 7.1 14.1 3.1 7.5 0.2 3.6 3 1 1 4 4 4 0 Nudix N-terminal YhfH PF14149.1 gi|284165876|ref|YP_003404155.1| - 4.1 7.2 14.0 16 5.3 0.0 3.5 1 1 2 3 3 3 0 YhfH-like protein GFA PF04828.9 gi|284165876|ref|YP_003404155.1| - 4.6 7.2 13.8 80 3.2 5.4 3.5 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-C3HC4 PF00097.20 gi|284165876|ref|YP_003404155.1| - 5.7 6.6 10.8 1.9 8.2 0.4 2.3 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-B_box PF00643.19 gi|284165876|ref|YP_003404155.1| - 6.1 6.8 11.4 8.7 6.3 5.0 2.5 1 1 1 2 2 2 0 B-box zinc finger Tnp_zf-ribbon_2 PF13842.1 gi|284165876|ref|YP_003404155.1| - 6.8 7.1 12.2 13 6.2 4.7 2.7 1 1 1 2 2 2 0 DDE_Tnp_1-like zinc-ribbon Desulfoferrod_N PF06397.7 gi|284165876|ref|YP_003404155.1| - 7 6.1 11.9 8.5 5.8 0.6 3.8 2 1 2 4 4 4 0 Desulfoferrodoxin, N-terminal domain zf-H2C2_2 PF13465.1 gi|284165876|ref|YP_003404155.1| - 7.1 7.1 18.5 1.2 9.5 0.5 3.5 2 1 2 4 4 3 0 Zinc-finger double domain zinc_ribbon_4 PF13717.1 gi|284165876|ref|YP_003404155.1| - 7.6 6.3 14.3 1.6 8.4 0.1 3.5 3 1 1 4 4 4 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|284165876|ref|YP_003404155.1| - 8.7 6.0 14.7 2.1 7.9 0.1 3.6 3 1 1 4 4 4 0 zinc-ribbon domain DUF650 PF04894.7 gi|284165877|ref|YP_003404156.1| - 9.7e-95 317.1 0.0 1.2e-94 316.8 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|284165877|ref|YP_003404156.1| - 5.7e-36 122.5 0.0 1.1e-35 121.6 0.0 1.5 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) Sensor PF13796.1 gi|284165878|ref|YP_003404157.1| - 0.0042 16.7 0.7 0.0042 16.7 0.5 1.0 1 0 0 1 1 1 1 Putative sensor NfeD PF01957.13 gi|284165878|ref|YP_003404157.1| - 0.02 15.0 1.9 0.022 14.8 1.3 1.1 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding DUF3185 PF11381.3 gi|284165878|ref|YP_003404157.1| - 0.027 14.2 0.9 0.027 14.2 0.6 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3185) Maff2 PF12750.2 gi|284165878|ref|YP_003404157.1| - 0.062 12.8 0.5 0.077 12.5 0.4 1.1 1 0 0 1 1 1 0 Maff2 family Neurensin PF14927.1 gi|284165878|ref|YP_003404157.1| - 0.083 12.2 0.1 0.094 12.1 0.1 1.2 1 0 0 1 1 1 0 Neurensin DUF2781 PF10914.3 gi|284165878|ref|YP_003404157.1| - 0.11 12.2 0.2 0.12 12.1 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2781) UPF0233 PF06781.7 gi|284165878|ref|YP_003404157.1| - 0.14 11.7 0.3 0.22 11.1 0.2 1.4 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0233) DUF3040 PF11239.3 gi|284165878|ref|YP_003404157.1| - 0.27 11.3 11.7 1.4 8.9 0.3 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3040) Na_H_antiporter PF03553.9 gi|284165880|ref|YP_003404159.1| - 1.5e-58 198.2 39.7 9.8e-58 195.5 12.1 2.9 1 1 1 2 2 2 2 Na+/H+ antiporter family DUF3323 PF11796.3 gi|284165880|ref|YP_003404159.1| - 0.14 11.4 0.0 0.2 10.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function N-terminus (DUF3323) UPF0118 PF01594.11 gi|284165881|ref|YP_003404160.1| - 1.8e-47 161.9 24.7 2.1e-47 161.6 17.1 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF20 DUF302 PF03625.9 gi|284165882|ref|YP_003404161.1| - 1.1e-19 69.7 0.0 1.7e-19 69.1 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF302 Abi PF02517.11 gi|284165883|ref|YP_003404162.1| - 1.8e-06 27.9 2.3 2.1e-06 27.7 0.2 1.9 1 1 1 2 2 2 1 CAAX protease self-immunity Virul_fac_BrkB PF03631.10 gi|284165885|ref|YP_003404164.1| - 0.31 10.3 11.2 3.1 7.0 5.9 2.1 1 1 1 2 2 2 0 Virulence factor BrkB UPF0259 PF06790.6 gi|284165886|ref|YP_003404165.1| - 0.0085 15.5 8.3 0.013 14.9 5.7 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0259) DUF2561 PF10812.3 gi|284165886|ref|YP_003404165.1| - 0.084 12.4 0.3 0.084 12.4 0.2 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF2561) DUF457 PF04307.9 gi|284165887|ref|YP_003404166.1| - 1.6e-17 63.3 3.6 2.2e-17 62.8 2.5 1.2 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Zn_dep_PLPC PF00882.13 gi|284165887|ref|YP_003404166.1| - 0.11 12.1 0.4 0.22 11.1 0.2 1.5 1 1 0 1 1 1 0 Zinc dependent phospholipase C CinA PF02464.12 gi|284165888|ref|YP_003404167.1| - 2.7e-57 192.5 0.1 3.1e-57 192.3 0.1 1.0 1 0 0 1 1 1 1 Competence-damaged protein SnoaL_2 PF12680.2 gi|284165889|ref|YP_003404168.1| - 4.8e-19 68.6 1.4 5.5e-19 68.4 1.0 1.1 1 0 0 1 1 1 1 SnoaL-like domain SnoaL PF07366.7 gi|284165889|ref|YP_003404168.1| - 8.7e-12 44.7 0.7 1.5e-11 43.9 0.5 1.4 1 1 0 1 1 1 1 SnoaL-like polyketide cyclase NTF2 PF02136.15 gi|284165889|ref|YP_003404168.1| - 1.2e-07 32.1 0.0 1.2e-07 32.0 0.0 1.2 1 0 0 1 1 1 1 Nuclear transport factor 2 (NTF2) domain SnoaL_4 PF13577.1 gi|284165889|ref|YP_003404168.1| - 1.7e-06 27.9 0.7 1.9e-06 27.7 0.5 1.2 1 0 0 1 1 1 1 SnoaL-like domain SnoaL_3 PF13474.1 gi|284165889|ref|YP_003404168.1| - 5.5e-05 23.1 0.0 8.6e-05 22.5 0.0 1.3 1 1 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.1 gi|284165889|ref|YP_003404168.1| - 0.0031 17.7 0.3 0.004 17.3 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) Aminotran_1_2 PF00155.16 gi|284165890|ref|YP_003404169.1| - 3.3e-54 184.2 0.0 4e-54 183.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|284165890|ref|YP_003404169.1| - 3.1e-07 29.4 0.0 8.7e-07 27.9 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|284165890|ref|YP_003404169.1| - 5.7e-07 28.9 0.0 8.6e-07 28.3 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|284165890|ref|YP_003404169.1| - 1.1e-05 24.7 0.2 1.7e-05 24.0 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|284165890|ref|YP_003404169.1| - 0.00039 18.8 0.0 0.00053 18.3 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_3 PF00202.16 gi|284165890|ref|YP_003404169.1| - 0.019 13.8 0.0 0.14 11.0 0.0 1.9 2 0 0 2 2 2 0 Aminotransferase class-III Glyco_trans_2_3 PF13632.1 gi|284165891|ref|YP_003404170.1| - 4e-08 33.2 1.9 7.3e-08 32.3 1.3 1.5 1 1 0 1 1 1 1 Glycosyl transferase family group 2 ArsA_ATPase PF02374.10 gi|284165892|ref|YP_003404171.1| - 2.5e-78 263.2 0.1 2.7e-51 174.4 0.0 2.3 2 1 0 2 2 2 2 Anion-transporting ATPase CbiA PF01656.18 gi|284165892|ref|YP_003404171.1| - 1.3e-09 37.7 0.0 5.3e-09 35.7 0.0 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|284165892|ref|YP_003404171.1| - 0.00013 21.9 0.1 0.0039 17.1 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|284165892|ref|YP_003404171.1| - 0.00069 19.0 2.9 0.014 14.7 0.1 2.6 3 0 0 3 3 3 1 AAA domain YhjQ PF06564.7 gi|284165892|ref|YP_003404171.1| - 0.023 14.0 0.0 0.04 13.2 0.0 1.3 1 0 0 1 1 1 0 YhjQ protein PhoH PF02562.11 gi|284165892|ref|YP_003404171.1| - 0.058 12.6 0.0 0.1 11.7 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein Zeta_toxin PF06414.7 gi|284165892|ref|YP_003404171.1| - 0.072 12.1 0.3 0.28 10.2 0.0 2.0 2 0 0 2 2 2 0 Zeta toxin IstB_IS21 PF01695.12 gi|284165892|ref|YP_003404171.1| - 0.15 11.5 0.0 0.25 10.7 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein SRP54 PF00448.17 gi|284165892|ref|YP_003404171.1| - 0.15 11.5 0.1 0.64 9.4 0.1 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain FAD_binding_3 PF01494.14 gi|284165893|ref|YP_003404172.1| - 1.8e-08 33.8 0.0 2.8e-07 29.9 0.0 2.1 2 0 0 2 2 2 1 FAD binding domain SE PF08491.5 gi|284165893|ref|YP_003404172.1| - 0.0019 17.1 0.0 0.0038 16.1 0.0 1.4 1 0 0 1 1 1 1 Squalene epoxidase FAD_oxidored PF12831.2 gi|284165893|ref|YP_003404172.1| - 0.0023 17.1 0.0 0.053 12.5 0.0 2.6 3 0 0 3 3 3 1 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|284165893|ref|YP_003404172.1| - 0.0071 15.0 0.0 2.2 6.7 0.0 2.2 2 0 0 2 2 2 2 Tryptophan halogenase Pyr_redox_2 PF07992.9 gi|284165893|ref|YP_003404172.1| - 0.11 12.3 0.0 1 9.2 0.0 2.1 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase LytR_C PF13399.1 gi|284165893|ref|YP_003404172.1| - 0.11 12.8 0.0 0.8 10.1 0.0 2.4 2 0 0 2 2 2 0 LytR cell envelope-related transcriptional attenuator K_oxygenase PF13434.1 gi|284165893|ref|YP_003404172.1| - 0.12 11.2 0.0 0.18 10.6 0.0 1.2 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) GMC_oxred_N PF00732.14 gi|284165893|ref|YP_003404172.1| - 0.18 10.9 0.0 1.9 7.5 0.0 2.0 2 0 0 2 2 2 0 GMC oxidoreductase Usp PF00582.21 gi|284165894|ref|YP_003404173.1| - 4.4e-19 69.0 6.1 5.1e-19 68.8 4.2 1.1 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.19 gi|284165894|ref|YP_003404173.1| - 0.054 12.7 3.1 0.26 10.5 2.3 1.8 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel MFS_1 PF07690.11 gi|284165895|ref|YP_003404174.1| - 3.8e-35 121.2 56.0 3e-30 105.1 31.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF3439 PF11921.3 gi|284165895|ref|YP_003404174.1| - 0.035 13.8 0.0 0.077 12.7 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3439) Neurensin PF14927.1 gi|284165895|ref|YP_003404174.1| - 0.094 12.1 0.1 0.094 12.1 0.1 2.7 3 1 0 3 3 3 0 Neurensin ATG22 PF11700.3 gi|284165895|ref|YP_003404174.1| - 1.5 7.2 20.2 0.37 9.2 10.8 2.3 2 1 0 2 2 2 0 Vacuole effluxer Atg22 like Tautomerase PF01361.16 gi|284165896|ref|YP_003404175.1| - 7.1e-11 41.5 0.0 3.5e-06 26.5 0.0 2.1 2 0 0 2 2 2 2 Tautomerase enzyme Tautomerase_2 PF14552.1 gi|284165896|ref|YP_003404175.1| - 2.5e-05 24.1 0.0 0.059 13.3 0.0 2.1 1 1 1 2 2 2 2 Tautomerase enzyme Tautomerase_3 PF14832.1 gi|284165896|ref|YP_003404175.1| - 0.013 15.5 0.0 0.068 13.1 0.0 1.8 1 1 0 2 2 2 0 Putative oxalocrotonate tautomerase enzyme Na_sulph_symp PF00939.14 gi|284165897|ref|YP_003404176.1| - 2.6e-90 303.5 29.6 3.3e-90 303.2 20.5 1.0 1 0 0 1 1 1 1 Sodium:sulfate symporter transmembrane region CitMHS PF03600.11 gi|284165897|ref|YP_003404176.1| - 1.9e-17 62.8 41.3 5.4e-08 31.8 5.2 3.5 2 2 2 4 4 4 3 Citrate transporter HTH_IclR PF09339.5 gi|284165898|ref|YP_003404177.1| - 1.5e-06 27.6 1.9 2.3e-06 27.1 1.3 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|284165898|ref|YP_003404177.1| - 0.00032 20.4 0.7 0.00046 19.9 0.5 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|284165898|ref|YP_003404177.1| - 0.00099 18.7 0.3 0.0015 18.1 0.2 1.3 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|284165898|ref|YP_003404177.1| - 0.001 18.6 0.0 0.0015 18.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|284165898|ref|YP_003404177.1| - 0.0017 17.9 0.0 0.0026 17.4 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_DeoR PF08220.7 gi|284165898|ref|YP_003404177.1| - 0.0022 17.5 0.1 0.0026 17.2 0.0 1.1 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|284165898|ref|YP_003404177.1| - 0.0025 17.7 0.0 0.0034 17.2 0.0 1.2 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.7 gi|284165898|ref|YP_003404177.1| - 0.003 17.1 0.0 0.0036 16.9 0.0 1.1 1 0 0 1 1 1 1 HTH domain HTH_Crp_2 PF13545.1 gi|284165898|ref|YP_003404177.1| - 0.003 17.3 0.1 0.004 16.9 0.1 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_23 PF13384.1 gi|284165898|ref|YP_003404177.1| - 0.0048 16.5 0.2 0.0064 16.1 0.2 1.2 1 0 0 1 1 1 1 Homeodomain-like domain Rrf2 PF02082.15 gi|284165898|ref|YP_003404177.1| - 0.0068 16.5 0.0 0.0084 16.2 0.0 1.1 1 0 0 1 1 1 1 Transcriptional regulator HTH_42 PF06224.7 gi|284165898|ref|YP_003404177.1| - 0.011 15.1 0.9 0.012 14.9 0.6 1.0 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|284165898|ref|YP_003404177.1| - 0.011 15.0 0.0 0.015 14.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding LexA_DNA_bind PF01726.11 gi|284165898|ref|YP_003404177.1| - 0.012 15.2 0.0 0.016 14.7 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain HTH_27 PF13463.1 gi|284165898|ref|YP_003404177.1| - 0.023 14.9 0.1 0.031 14.6 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain TrmB PF01978.14 gi|284165898|ref|YP_003404177.1| - 0.024 14.3 0.0 0.029 14.0 0.0 1.1 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_AsnC-type PF13404.1 gi|284165898|ref|YP_003404177.1| - 0.035 13.6 0.4 0.078 12.5 0.3 1.6 1 1 0 1 1 1 0 AsnC-type helix-turn-helix domain FeoC PF09012.5 gi|284165898|ref|YP_003404177.1| - 0.04 13.6 0.0 0.049 13.3 0.0 1.1 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_34 PF13601.1 gi|284165898|ref|YP_003404177.1| - 0.087 12.8 0.0 0.12 12.3 0.0 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain adh_short PF00106.20 gi|284165899|ref|YP_003404178.1| - 3.7e-34 118.0 1.1 4.9e-34 117.6 0.8 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|284165899|ref|YP_003404178.1| - 1e-19 71.3 0.0 1.3e-19 70.8 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|284165899|ref|YP_003404178.1| - 2.7e-15 56.4 0.1 4.9e-15 55.6 0.1 1.3 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|284165899|ref|YP_003404178.1| - 7.3e-15 55.4 0.4 1.1e-14 54.8 0.3 1.3 1 0 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|284165899|ref|YP_003404178.1| - 1.3e-07 31.3 0.0 4.2e-07 29.6 0.0 1.8 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|284165899|ref|YP_003404178.1| - 4.4e-06 25.7 0.1 8.4e-06 24.8 0.1 1.4 1 0 0 1 1 1 1 RmlD substrate binding domain DUF1776 PF08643.5 gi|284165899|ref|YP_003404178.1| - 0.00012 21.3 0.0 0.00037 19.7 0.0 1.6 1 1 0 2 2 2 1 Fungal family of unknown function (DUF1776) NmrA PF05368.8 gi|284165899|ref|YP_003404178.1| - 0.00022 20.5 0.0 0.00062 19.0 0.0 1.7 2 0 0 2 2 2 1 NmrA-like family Eno-Rase_NADH_b PF12242.3 gi|284165899|ref|YP_003404178.1| - 0.00087 19.0 0.0 0.0018 17.9 0.0 1.5 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase TrkA_N PF02254.13 gi|284165899|ref|YP_003404178.1| - 0.014 15.4 0.0 0.031 14.2 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain 3Beta_HSD PF01073.14 gi|284165899|ref|YP_003404178.1| - 0.038 12.6 0.0 0.052 12.2 0.0 1.2 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family Usp PF00582.21 gi|284165900|ref|YP_003404179.1| - 2.7e-25 89.1 15.0 6.7e-15 55.5 1.9 2.1 2 0 0 2 2 2 2 Universal stress protein family Ser_hydrolase PF06821.8 gi|284165900|ref|YP_003404179.1| - 0.041 13.4 1.4 0.065 12.8 0.1 2.0 2 1 1 3 3 3 0 Serine hydrolase Endonuclease_5 PF04493.9 gi|284165901|ref|YP_003404180.1| - 1.8e-44 151.5 0.0 2.5e-44 151.1 0.0 1.1 1 0 0 1 1 1 1 Endonuclease V DUF99 PF01949.11 gi|284165901|ref|YP_003404180.1| - 0.0012 18.0 0.0 0.16 11.0 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function DUF99 Rhomboid PF01694.17 gi|284165902|ref|YP_003404181.1| - 4.9e-27 94.7 13.9 4.9e-27 94.7 9.6 1.6 2 0 0 2 2 2 1 Rhomboid family zf-AN1 PF01428.11 gi|284165902|ref|YP_003404181.1| - 2e-14 53.1 6.2 2.7e-14 52.7 4.3 1.2 1 0 0 1 1 1 1 AN1-like Zinc finger DUF1751 PF08551.5 gi|284165902|ref|YP_003404181.1| - 4.9e-05 23.5 1.9 4.9e-05 23.5 1.3 2.0 1 1 0 1 1 1 1 Eukaryotic integral membrane protein (DUF1751) FYVE PF01363.16 gi|284165902|ref|YP_003404181.1| - 0.057 13.3 1.5 0.081 12.8 1.0 1.2 1 0 0 1 1 1 0 FYVE zinc finger zf-HIT PF04438.11 gi|284165902|ref|YP_003404181.1| - 0.13 11.9 4.3 0.18 11.4 3.0 1.2 1 0 0 1 1 1 0 HIT zinc finger C1_3 PF07649.7 gi|284165902|ref|YP_003404181.1| - 0.82 9.7 5.2 1.3 9.1 3.6 1.3 1 0 0 1 1 1 0 C1-like domain CENP-F_leu_zip PF10473.4 gi|284165903|ref|YP_003404182.1| - 0.96 9.3 5.4 0.27 11.0 1.9 1.4 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DNA_pol_B_thumb PF14791.1 gi|284165904|ref|YP_003404183.1| - 1.7e-26 91.6 0.0 4.2e-26 90.4 0.0 1.7 1 0 0 1 1 1 1 DNA polymerase beta thumb HHH_8 PF14716.1 gi|284165904|ref|YP_003404183.1| - 1.2e-19 70.2 4.8 4.8e-15 55.5 0.2 3.7 2 1 1 3 3 3 3 Helix-hairpin-helix domain PHP PF02811.14 gi|284165904|ref|YP_003404183.1| - 1.8e-15 57.1 0.1 6.3e-15 55.3 0.1 2.0 1 1 0 1 1 1 1 PHP domain HHH_5 PF14520.1 gi|284165904|ref|YP_003404183.1| - 2.5e-14 53.1 8.3 1.2e-12 47.8 0.2 3.6 3 1 0 3 3 3 2 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|284165904|ref|YP_003404183.1| - 1.1e-08 34.8 3.0 0.00028 20.7 0.0 3.3 3 0 0 3 3 3 2 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.4 gi|284165904|ref|YP_003404183.1| - 2.2e-07 30.3 0.0 2e-06 27.2 0.0 2.7 2 1 1 3 3 3 1 Fingers domain of DNA polymerase lambda HHH PF00633.18 gi|284165904|ref|YP_003404183.1| - 1.9e-05 24.0 1.0 0.0014 18.2 0.1 3.5 3 0 0 3 3 3 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|284165904|ref|YP_003404183.1| - 0.00056 19.7 0.1 4.5 7.3 0.0 3.7 2 1 0 2 2 2 2 Helix-hairpin-helix motif DNA_pol_B_palm PF14792.1 gi|284165904|ref|YP_003404183.1| - 0.0022 18.0 0.0 0.0056 16.7 0.0 1.7 1 0 0 1 1 1 1 DNA polymerase beta palm IMS_HHH PF11798.3 gi|284165904|ref|YP_003404183.1| - 0.011 15.7 0.0 7.8 6.7 0.0 2.9 2 0 0 2 2 2 0 IMS family HHH motif Cdd1 PF11731.3 gi|284165904|ref|YP_003404183.1| - 0.022 14.6 0.1 0.3 11.0 0.0 2.6 1 1 1 2 2 2 0 Pathogenicity locus Ribosomal_S13 PF00416.17 gi|284165904|ref|YP_003404183.1| - 0.033 14.6 0.8 2.3 8.7 0.0 3.4 2 1 2 4 4 4 0 Ribosomal protein S13/S18 Mut7-C PF01927.11 gi|284165905|ref|YP_003404184.1| - 4.9e-38 130.4 0.1 5.4e-38 130.2 0.1 1.0 1 0 0 1 1 1 1 Mut7-C RNAse domain DZR PF12773.2 gi|284165905|ref|YP_003404184.1| - 0.032 14.0 0.4 0.061 13.1 0.1 1.6 2 0 0 2 2 2 0 Double zinc ribbon SprT-like PF10263.4 gi|284165905|ref|YP_003404184.1| - 0.14 11.7 0.4 0.42 10.2 0.3 1.6 1 1 0 1 1 1 0 SprT-like family GFA PF04828.9 gi|284165905|ref|YP_003404184.1| - 0.19 11.6 1.0 1.7 8.6 0.0 2.2 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme Dodecin PF07311.7 gi|284165906|ref|YP_003404185.1| - 1.2e-23 82.8 0.2 1.3e-23 82.7 0.2 1.0 1 0 0 1 1 1 1 Dodecin FIVAR PF07554.8 gi|284165906|ref|YP_003404185.1| - 0.074 13.3 0.6 0.1 12.8 0.4 1.3 1 0 0 1 1 1 0 Uncharacterised Sugar-binding Domain PHP_C PF13263.1 gi|284165907|ref|YP_003404186.1| - 3.8e-16 58.3 0.2 8e-16 57.2 0.2 1.5 1 0 0 1 1 1 1 PHP-associated PHP PF02811.14 gi|284165907|ref|YP_003404186.1| - 0.00089 19.0 0.0 0.0012 18.7 0.0 1.1 1 0 0 1 1 1 1 PHP domain Pyr_redox_dim PF02852.17 gi|284165907|ref|YP_003404186.1| - 0.074 13.0 0.0 0.16 12.0 0.0 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain zf-C2H2 PF00096.21 gi|284165909|ref|YP_003404188.1| - 0.003 17.8 0.0 3.1 8.3 0.0 2.3 2 0 0 2 2 2 2 Zinc finger, C2H2 type Herpes_UL47 PF03362.8 gi|284165909|ref|YP_003404188.1| - 0.02 13.2 0.4 0.024 12.9 0.2 1.0 1 0 0 1 1 1 0 Herpesvirus UL47 protein DUF4594 PF15266.1 gi|284165909|ref|YP_003404188.1| - 0.035 14.2 0.0 0.054 13.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4594) DUF349 PF03993.7 gi|284165909|ref|YP_003404188.1| - 0.095 12.8 0.3 0.15 12.2 0.2 1.3 1 0 0 1 1 1 0 Domain of Unknown Function (DUF349) zf-C2H2_4 PF13894.1 gi|284165909|ref|YP_003404188.1| - 0.13 12.6 0.0 5.9 7.4 0.0 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger TF_Zn_Ribbon PF08271.7 gi|284165909|ref|YP_003404188.1| - 0.24 10.7 1.7 2.4 7.5 0.3 2.4 1 1 1 2 2 2 0 TFIIB zinc-binding DUF900 PF05990.7 gi|284165910|ref|YP_003404189.1| - 8e-08 31.8 0.0 1.2e-07 31.3 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF900) Abhydrolase_6 PF12697.2 gi|284165910|ref|YP_003404189.1| - 0.00078 19.3 2.5 0.0019 18.1 1.7 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family PGAP1 PF07819.8 gi|284165910|ref|YP_003404189.1| - 0.0013 18.3 0.0 0.0022 17.6 0.0 1.3 1 0 0 1 1 1 1 PGAP1-like protein Lipase_3 PF01764.20 gi|284165910|ref|YP_003404189.1| - 0.0028 17.2 0.0 0.0038 16.8 0.0 1.3 1 0 0 1 1 1 1 Lipase (class 3) Abhydrolase_5 PF12695.2 gi|284165910|ref|YP_003404189.1| - 0.011 15.5 1.3 0.023 14.4 0.9 1.7 1 1 0 1 1 1 0 Alpha/beta hydrolase family DUF676 PF05057.9 gi|284165910|ref|YP_003404189.1| - 0.057 12.6 0.0 0.092 12.0 0.0 1.4 1 1 0 1 1 1 0 Putative serine esterase (DUF676) Esterase PF00756.15 gi|284165910|ref|YP_003404189.1| - 0.068 12.5 0.0 0.091 12.1 0.0 1.3 1 0 0 1 1 1 0 Putative esterase Spt5-NGN PF03439.8 gi|284165911|ref|YP_003404190.1| - 2.9e-23 81.3 0.0 4.7e-23 80.7 0.0 1.3 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|284165911|ref|YP_003404190.1| - 1.8e-07 30.5 0.6 4.6e-07 29.3 0.1 1.9 2 0 0 2 2 2 1 KOW motif SecE PF00584.15 gi|284165912|ref|YP_003404191.1| - 0.008 15.7 0.1 0.0091 15.5 0.1 1.1 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex Trypsin_2 PF13365.1 gi|284165914|ref|YP_003404193.1| - 8.1e-21 74.2 0.5 1.4e-20 73.4 0.3 1.4 1 0 0 1 1 1 1 Trypsin-like peptidase domain PDZ_2 PF13180.1 gi|284165914|ref|YP_003404193.1| - 2.8e-17 62.3 0.0 7.4e-17 61.0 0.0 1.8 1 0 0 1 1 1 1 PDZ domain Trypsin PF00089.21 gi|284165914|ref|YP_003404193.1| - 5.5e-12 45.7 0.8 9.7e-12 44.9 0.5 1.5 1 0 0 1 1 1 1 Trypsin PDZ PF00595.19 gi|284165914|ref|YP_003404193.1| - 5.7e-06 26.4 0.2 3.3e-05 23.9 0.2 2.3 1 1 0 1 1 1 1 PDZ domain (Also known as DHR or GLGF) Tricorn_PDZ PF14685.1 gi|284165914|ref|YP_003404193.1| - 0.0068 16.1 0.2 0.039 13.7 0.0 2.3 2 0 0 2 2 2 1 Tricorn protease PDZ domain UCR_Fe-S_N PF10399.4 gi|284165914|ref|YP_003404193.1| - 0.076 12.2 0.9 0.2 10.8 0.6 1.7 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Peptidase_S46 PF10459.4 gi|284165914|ref|YP_003404193.1| - 1.2 7.4 4.2 0.17 10.2 0.3 1.3 2 0 0 2 2 2 0 Peptidase S46 Aldolase PF01081.14 gi|284165915|ref|YP_003404194.1| - 6.9e-45 152.6 1.7 7.9e-45 152.4 1.2 1.0 1 0 0 1 1 1 1 KDPG and KHG aldolase DHO_dh PF01180.16 gi|284165915|ref|YP_003404194.1| - 0.2 10.5 6.3 2.1 7.2 0.6 2.9 2 1 1 3 3 3 0 Dihydroorotate dehydrogenase Regulator_TrmB PF11495.3 gi|284165916|ref|YP_003404195.1| - 4.6e-58 195.9 0.0 6.3e-58 195.5 0.0 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.14 gi|284165916|ref|YP_003404195.1| - 4.8e-16 58.2 0.0 1.1e-15 57.0 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|284165916|ref|YP_003404195.1| - 0.0051 16.3 0.3 1.1 8.9 0.0 2.8 3 0 0 3 3 3 1 IclR helix-turn-helix domain Rrf2 PF02082.15 gi|284165916|ref|YP_003404195.1| - 0.0067 16.5 0.0 0.054 13.6 0.0 2.2 2 0 0 2 2 2 1 Transcriptional regulator HTH_11 PF08279.7 gi|284165916|ref|YP_003404195.1| - 0.008 15.7 0.1 5.3 6.7 0.0 2.6 2 0 0 2 2 2 2 HTH domain MarR PF01047.17 gi|284165916|ref|YP_003404195.1| - 0.0089 15.7 0.0 0.02 14.5 0.0 1.6 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|284165916|ref|YP_003404195.1| - 0.012 15.2 0.0 0.031 13.9 0.0 1.7 1 0 0 1 1 1 0 MarR family GlcNAc_2-epim PF07221.6 gi|284165917|ref|YP_003404196.1| - 0.00044 19.3 0.8 0.00069 18.7 0.2 1.5 1 1 0 1 1 1 1 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Glyco_hydro_15 PF00723.16 gi|284165917|ref|YP_003404196.1| - 0.0028 16.3 0.0 0.064 11.8 0.0 2.2 2 0 0 2 2 2 2 Glycosyl hydrolases family 15 Prenyltrans_1 PF13243.1 gi|284165917|ref|YP_003404196.1| - 0.11 12.4 2.5 0.76 9.8 0.3 2.6 1 1 1 2 2 2 0 Prenyltransferase-like ABC_tran PF00005.22 gi|284165918|ref|YP_003404197.1| - 6.5e-33 113.9 0.0 1.3e-32 112.9 0.0 1.5 1 0 0 1 1 1 1 ABC transporter TOBE PF03459.12 gi|284165918|ref|YP_003404197.1| - 5.6e-11 42.3 0.1 5.6e-10 39.1 0.1 2.5 2 0 0 2 2 2 1 TOBE domain TOBE_2 PF08402.5 gi|284165918|ref|YP_003404197.1| - 1.4e-10 41.0 0.6 5.1e-10 39.2 0.2 2.2 3 0 0 3 3 1 1 TOBE domain AAA_21 PF13304.1 gi|284165918|ref|YP_003404197.1| - 2.7e-08 34.1 0.0 9.1e-05 22.5 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_18 PF13238.1 gi|284165918|ref|YP_003404197.1| - 6.8e-05 23.1 0.0 0.00018 21.8 0.0 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|284165918|ref|YP_003404197.1| - 7e-05 22.1 0.0 0.00026 20.2 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|284165918|ref|YP_003404197.1| - 0.00057 20.0 0.2 0.0015 18.6 0.2 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|284165918|ref|YP_003404197.1| - 0.0018 18.3 0.1 0.0037 17.2 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain TrkA_C PF02080.16 gi|284165918|ref|YP_003404197.1| - 0.0031 17.0 1.2 0.023 14.3 0.1 2.7 3 0 0 3 3 3 1 TrkA-C domain Rad17 PF03215.10 gi|284165918|ref|YP_003404197.1| - 0.0041 15.8 0.0 0.0072 15.0 0.0 1.4 1 1 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_17 PF13207.1 gi|284165918|ref|YP_003404197.1| - 0.0066 17.2 1.8 0.034 14.9 1.3 2.6 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|284165918|ref|YP_003404197.1| - 0.0074 16.4 0.0 0.019 15.1 0.0 1.8 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|284165918|ref|YP_003404197.1| - 0.02 14.7 0.1 0.055 13.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|284165918|ref|YP_003404197.1| - 0.023 14.6 0.3 0.06 13.3 0.2 1.9 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|284165918|ref|YP_003404197.1| - 0.029 13.5 0.0 0.049 12.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_14 PF13173.1 gi|284165918|ref|YP_003404197.1| - 0.034 14.0 0.0 0.068 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|284165918|ref|YP_003404197.1| - 0.037 13.7 0.1 0.1 12.3 0.1 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NB-ARC PF00931.17 gi|284165918|ref|YP_003404197.1| - 0.041 12.7 0.1 0.069 11.9 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain Miro PF08477.8 gi|284165918|ref|YP_003404197.1| - 0.051 14.0 0.0 0.12 12.8 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein SRP54 PF00448.17 gi|284165918|ref|YP_003404197.1| - 0.058 12.8 0.1 0.13 11.6 0.0 1.7 2 0 0 2 2 1 0 SRP54-type protein, GTPase domain AAA_30 PF13604.1 gi|284165918|ref|YP_003404197.1| - 0.06 12.9 0.3 0.2 11.2 0.1 2.1 2 1 0 2 2 2 0 AAA domain AAA_15 PF13175.1 gi|284165918|ref|YP_003404197.1| - 0.062 12.3 0.0 0.28 10.1 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_25 PF13481.1 gi|284165918|ref|YP_003404197.1| - 0.068 12.5 0.6 0.33 10.3 0.4 2.1 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|284165918|ref|YP_003404197.1| - 0.074 12.7 0.2 0.21 11.2 0.1 1.8 2 0 0 2 2 2 0 NACHT domain AAA_19 PF13245.1 gi|284165918|ref|YP_003404197.1| - 0.11 12.2 0.2 0.8 9.5 0.1 2.4 3 0 0 3 3 2 0 Part of AAA domain AAA_29 PF13555.1 gi|284165918|ref|YP_003404197.1| - 0.17 11.4 0.0 0.36 10.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain SBP_bac_8 PF13416.1 gi|284165919|ref|YP_003404198.1| - 9.3e-38 130.5 5.4 1.3e-37 130.1 3.8 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|284165919|ref|YP_003404198.1| - 3.2e-22 79.6 5.7 4.3e-22 79.2 3.9 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Polysacc_deac_3 PF15421.1 gi|284165919|ref|YP_003404198.1| - 0.042 12.5 0.1 0.059 12.0 0.0 1.2 1 0 0 1 1 1 0 Putative polysaccharide deacetylase BPD_transp_1 PF00528.17 gi|284165920|ref|YP_003404199.1| - 1.2e-13 51.0 17.0 1.2e-13 51.0 11.8 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|284165921|ref|YP_003404200.1| - 9.8e-18 64.3 17.5 1.2e-16 60.7 12.1 2.1 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component Alpha-amylase PF00128.19 gi|284165922|ref|YP_003404201.1| - 2.8e-54 184.6 0.1 2e-52 178.5 0.0 2.7 1 1 0 1 1 1 1 Alpha amylase, catalytic domain DUF3459 PF11941.3 gi|284165922|ref|YP_003404201.1| - 3.8e-08 33.3 0.3 1.4e-07 31.5 0.2 2.0 1 0 0 1 1 1 1 Domain of unknown function (DUF3459) GHL6 PF14871.1 gi|284165922|ref|YP_003404201.1| - 0.096 12.7 0.0 0.27 11.2 0.0 1.7 1 0 0 1 1 1 0 Hypothetical glycosyl hydrolase 6 Haem_oxygenas_2 PF14518.1 gi|284165922|ref|YP_003404201.1| - 0.12 12.5 0.5 0.3 11.2 0.3 1.7 1 0 0 1 1 1 0 Iron-containing redox enzyme MR_MLE_C PF13378.1 gi|284165924|ref|YP_003404203.1| - 9.3e-31 106.0 0.1 2.7e-30 104.5 0.0 1.8 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|284165924|ref|YP_003404203.1| - 5.3e-14 52.2 0.1 1e-13 51.3 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|284165924|ref|YP_003404203.1| - 9.7e-14 51.6 3.3 1.1e-12 48.3 0.0 3.7 4 0 0 4 4 4 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain tRNA_SAD PF07973.9 gi|284165925|ref|YP_003404204.1| - 2.4e-13 49.7 0.1 4e-13 49.0 0.1 1.4 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.14 gi|284165925|ref|YP_003404204.1| - 3.2e-05 22.4 0.0 4.2e-05 22.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) HTH_31 PF13560.1 gi|284165926|ref|YP_003404205.1| - 0.002 18.2 3.3 0.0042 17.2 2.3 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|284165926|ref|YP_003404205.1| - 0.039 13.8 2.0 0.13 12.1 1.4 1.8 1 1 0 1 1 1 0 Helix-turn-helix HTH_19 PF12844.2 gi|284165926|ref|YP_003404205.1| - 0.056 13.5 0.1 0.086 12.9 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain PhnA_Zn_Ribbon PF08274.7 gi|284165926|ref|YP_003404205.1| - 0.15 11.8 2.1 0.45 10.3 1.4 1.7 1 1 0 1 1 1 0 PhnA Zinc-Ribbon Chorion_3 PF05387.6 gi|284165926|ref|YP_003404205.1| - 0.24 10.8 4.0 0.37 10.2 2.8 1.2 1 0 0 1 1 1 0 Chorion family 3 HTH_25 PF13413.1 gi|284165926|ref|YP_003404205.1| - 3.3 7.4 7.0 0.31 10.6 1.6 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain DUF420 PF04238.7 gi|284165927|ref|YP_003404206.1| - 2.1e-36 124.8 6.5 2.1e-36 124.8 4.5 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF420) DUF2306 PF10067.4 gi|284165927|ref|YP_003404206.1| - 4.5e-05 23.5 4.1 4.5e-05 23.5 2.9 2.7 1 1 0 2 2 2 1 Predicted membrane protein (DUF2306) DUF973 PF06157.6 gi|284165927|ref|YP_003404206.1| - 0.33 9.8 6.7 0.46 9.3 4.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF973) DUF1240 PF06836.7 gi|284165927|ref|YP_003404206.1| - 0.92 9.7 8.8 0.062 13.5 1.3 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF1240) DUF4149 PF13664.1 gi|284165927|ref|YP_003404206.1| - 5.6 7.0 9.1 1.6 8.8 0.9 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4149) GATase_6 PF13522.1 gi|284165928|ref|YP_003404207.1| - 5.8e-23 81.3 0.0 1.3e-22 80.1 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|284165928|ref|YP_003404207.1| - 5.1e-21 74.6 0.0 1e-20 73.7 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|284165928|ref|YP_003404207.1| - 1.8e-19 69.6 0.0 1.9e-13 49.8 0.0 3.1 1 1 1 2 2 2 2 Glutamine amidotransferases class-II Pribosyltran PF00156.22 gi|284165928|ref|YP_003404207.1| - 1.8e-11 43.8 0.1 6.1e-11 42.1 0.1 1.8 1 1 0 1 1 1 1 Phosphoribosyl transferase domain GATase_4 PF13230.1 gi|284165928|ref|YP_003404207.1| - 0.0025 16.5 0.0 0.0043 15.7 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Na_sulph_symp PF00939.14 gi|284165929|ref|YP_003404208.1| - 1.3e-29 103.4 24.3 2.5e-29 102.4 16.9 1.3 1 1 0 1 1 1 1 Sodium:sulfate symporter transmembrane region CitMHS PF03600.11 gi|284165929|ref|YP_003404208.1| - 5.3e-09 35.1 19.7 1.7e-07 30.1 5.5 2.5 1 1 1 2 2 2 2 Citrate transporter MutS_V PF00488.16 gi|284165930|ref|YP_003404209.1| - 1.2e-10 41.1 0.0 2.1e-10 40.4 0.0 1.3 1 0 0 1 1 1 1 MutS domain V AAA_10 PF12846.2 gi|284165930|ref|YP_003404209.1| - 0.011 15.2 3.8 0.042 13.2 0.0 3.0 2 2 1 3 3 3 0 AAA-like domain Spore_YpjB PF09577.5 gi|284165930|ref|YP_003404209.1| - 0.014 14.9 0.0 0.024 14.2 0.0 1.3 1 0 0 1 1 1 0 Sporulation protein YpjB (SpoYpjB) AAA_28 PF13521.1 gi|284165930|ref|YP_003404209.1| - 0.048 13.6 0.1 0.048 13.6 0.0 3.1 3 0 0 3 3 3 0 AAA domain AAA_21 PF13304.1 gi|284165930|ref|YP_003404209.1| - 0.049 13.5 0.1 0.098 12.6 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|284165930|ref|YP_003404209.1| - 0.065 13.1 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain Apolipoprotein PF01442.13 gi|284165930|ref|YP_003404209.1| - 0.1 12.1 2.7 0.29 10.6 1.9 1.7 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain AAA_29 PF13555.1 gi|284165930|ref|YP_003404209.1| - 0.16 11.5 0.1 0.33 10.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF4404 PF14357.1 gi|284165930|ref|YP_003404209.1| - 0.46 10.9 2.9 25 5.3 0.1 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4404) MutS_III PF05192.13 gi|284165930|ref|YP_003404209.1| - 0.48 10.1 8.2 2.5 7.8 5.7 2.2 1 1 0 1 1 1 0 MutS domain III DUF4265 PF14085.1 gi|284165931|ref|YP_003404210.1| - 0.09 12.5 0.1 1.7 8.4 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4265) DZR PF12773.2 gi|284165932|ref|YP_003404211.1| - 0.0012 18.6 0.5 0.0013 18.5 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_4 PF13717.1 gi|284165932|ref|YP_003404211.1| - 0.0027 17.3 0.3 0.09 12.4 0.0 2.2 2 0 0 2 2 2 1 zinc-ribbon domain HypA PF01155.14 gi|284165932|ref|YP_003404211.1| - 0.0047 16.5 0.2 0.0052 16.4 0.1 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zf-C2H2_4 PF13894.1 gi|284165932|ref|YP_003404211.1| - 0.0092 16.2 1.7 0.049 13.9 0.5 2.1 1 1 1 2 2 2 1 C2H2-type zinc finger zinc_ribbon_5 PF13719.1 gi|284165932|ref|YP_003404211.1| - 0.0099 15.4 2.6 0.061 12.9 0.0 2.2 1 1 1 2 2 2 2 zinc-ribbon domain DUF1610 PF07754.6 gi|284165932|ref|YP_003404211.1| - 0.01 15.9 0.5 0.01 15.9 0.4 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Zn-ribbon_8 PF09723.5 gi|284165932|ref|YP_003404211.1| - 0.014 15.3 4.3 0.32 10.9 3.0 2.1 1 1 0 1 1 1 0 Zinc ribbon domain DUF2296 PF10058.4 gi|284165932|ref|YP_003404211.1| - 0.016 14.9 0.1 0.29 10.9 0.0 2.1 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) UPF0547 PF10571.4 gi|284165932|ref|YP_003404211.1| - 0.016 14.8 4.7 0.029 14.0 3.3 1.4 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 zf-C4_Topoisom PF01396.14 gi|284165932|ref|YP_003404211.1| - 0.019 14.4 1.0 3.5 7.2 0.0 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_2 PF13240.1 gi|284165932|ref|YP_003404211.1| - 0.021 14.2 0.4 1.4 8.5 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|284165932|ref|YP_003404211.1| - 0.023 14.7 0.2 3.9 7.5 0.0 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Nudix_N_2 PF14803.1 gi|284165932|ref|YP_003404211.1| - 0.023 14.3 1.1 0.71 9.6 0.0 2.2 2 0 0 2 2 2 0 Nudix N-terminal zinc-ribbons_6 PF07191.7 gi|284165932|ref|YP_003404211.1| - 0.027 14.2 0.2 0.031 14.0 0.2 1.2 1 0 0 1 1 1 0 zinc-ribbons zf-H2C2_2 PF13465.1 gi|284165932|ref|YP_003404211.1| - 0.028 14.7 1.7 0.17 12.2 0.0 2.1 2 0 0 2 2 2 0 Zinc-finger double domain DUF35_N PF12172.3 gi|284165932|ref|YP_003404211.1| - 0.036 13.9 3.0 0.06 13.2 2.1 1.4 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) TF_Zn_Ribbon PF08271.7 gi|284165932|ref|YP_003404211.1| - 0.038 13.3 4.2 0.15 11.3 2.5 2.0 1 1 1 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|284165932|ref|YP_003404211.1| - 0.057 12.6 5.7 0.8 8.9 4.3 2.1 1 1 1 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|284165932|ref|YP_003404211.1| - 0.074 12.5 1.1 0.72 9.4 0.0 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-HIT PF04438.11 gi|284165932|ref|YP_003404211.1| - 0.093 12.3 1.0 2.3 7.9 0.0 2.1 2 0 0 2 2 2 0 HIT zinc finger OrfB_Zn_ribbon PF07282.6 gi|284165932|ref|YP_003404211.1| - 0.12 12.0 0.9 1.1 8.9 0.0 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain RNA_POL_M_15KD PF02150.11 gi|284165932|ref|YP_003404211.1| - 0.16 11.7 0.9 1.6 8.5 0.0 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit A2L_zn_ribbon PF08792.5 gi|284165932|ref|YP_003404211.1| - 0.17 11.3 2.2 0.5 9.8 0.2 2.0 2 0 0 2 2 2 0 A2L zinc ribbon domain DNA_ligase_ZBD PF03119.11 gi|284165932|ref|YP_003404211.1| - 0.21 11.3 4.4 3.6 7.3 0.8 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain RRN7 PF11781.3 gi|284165932|ref|YP_003404211.1| - 0.22 11.0 5.0 1.1 8.7 0.2 2.2 1 1 1 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-Mss51 PF13824.1 gi|284165932|ref|YP_003404211.1| - 0.28 11.0 3.6 0.3 10.9 0.9 1.9 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Acetone_carb_G PF08882.6 gi|284165932|ref|YP_003404211.1| - 0.28 11.2 1.2 0.53 10.3 0.3 1.8 1 1 1 2 2 2 0 Acetone carboxylase gamma subunit zf-C2H2 PF00096.21 gi|284165932|ref|YP_003404211.1| - 0.33 11.3 2.6 0.54 10.7 0.1 2.1 2 0 0 2 2 2 0 Zinc finger, C2H2 type Prok-RING_1 PF14446.1 gi|284165932|ref|YP_003404211.1| - 0.52 10.0 3.6 2.1 8.1 0.1 1.8 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 DUF329 PF03884.9 gi|284165932|ref|YP_003404211.1| - 0.53 9.8 2.8 11 5.6 0.2 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF329) Zn_Tnp_IS1 PF03811.8 gi|284165932|ref|YP_003404211.1| - 0.62 9.6 3.4 4.1 6.9 0.1 2.1 1 1 1 2 2 2 0 InsA N-terminal domain zf-RING_3 PF14369.1 gi|284165932|ref|YP_003404211.1| - 0.78 9.7 4.2 4.4 7.3 0.4 2.3 2 1 0 2 2 2 0 zinc-finger Rubredoxin PF00301.15 gi|284165932|ref|YP_003404211.1| - 0.87 9.5 5.4 1.7 8.5 0.2 2.1 1 1 1 2 2 2 0 Rubredoxin zf-TFIIB PF13453.1 gi|284165932|ref|YP_003404211.1| - 5.9 6.1 6.2 7.7 5.7 0.4 2.3 1 1 1 2 2 2 0 Transcription factor zinc-finger HAD_2 PF13419.1 gi|284165933|ref|YP_003404212.1| - 1.9e-15 57.5 0.4 2.2e-15 57.3 0.3 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|284165933|ref|YP_003404212.1| - 3.9e-08 32.8 0.0 7.5e-08 31.9 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|284165933|ref|YP_003404212.1| - 3e-07 31.0 0.9 4.4e-05 24.0 0.6 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|284165933|ref|YP_003404212.1| - 0.16 12.1 0.4 0.47 10.5 0.3 1.7 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Polyketide_cyc2 PF10604.4 gi|284165934|ref|YP_003404213.1| - 3.2e-12 46.7 0.9 3.9e-12 46.5 0.6 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.6 gi|284165934|ref|YP_003404213.1| - 8.3e-05 22.6 0.0 0.0001 22.3 0.0 1.1 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein Polyketide_cyc PF03364.15 gi|284165934|ref|YP_003404213.1| - 0.0042 17.0 0.0 0.0051 16.7 0.0 1.3 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport peroxidase PF00141.18 gi|284165935|ref|YP_003404214.1| - 1.3e-88 296.3 0.0 1.1e-49 169.0 0.0 2.3 2 0 0 2 2 2 2 Peroxidase DUF4578 PF15147.1 gi|284165935|ref|YP_003404214.1| - 0.14 12.5 0.0 0.25 11.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4578) Amidohydro_1 PF01979.15 gi|284165936|ref|YP_003404215.1| - 1.9e-24 86.9 0.0 1.1e-22 81.1 0.0 2.0 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|284165936|ref|YP_003404215.1| - 9.6e-11 42.2 8.1 3.4e-10 40.4 5.6 1.8 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|284165936|ref|YP_003404215.1| - 6.6e-06 25.8 0.0 1.6e-05 24.6 0.0 1.7 1 0 0 1 1 1 1 Amidohydrolase A_deaminase PF00962.17 gi|284165936|ref|YP_003404215.1| - 3.8e-05 22.7 0.0 6.1e-05 22.0 0.0 1.3 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_3 PF07969.6 gi|284165936|ref|YP_003404215.1| - 0.00074 18.8 7.6 0.0082 15.4 0.1 3.1 1 1 2 3 3 3 2 Amidohydrolase family Usp PF00582.21 gi|284165937|ref|YP_003404216.1| - 9.5e-38 129.5 1.3 1.2e-37 129.2 0.9 1.1 1 0 0 1 1 1 1 Universal stress protein family BPL_LplA_LipB PF03099.14 gi|284165938|ref|YP_003404217.1| - 1.9e-18 66.6 0.0 2.9e-18 66.0 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family BPL_C PF02237.12 gi|284165938|ref|YP_003404217.1| - 8.3e-15 54.2 0.4 1.5e-14 53.3 0.2 1.5 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain HTH_11 PF08279.7 gi|284165938|ref|YP_003404217.1| - 5.3e-13 48.3 0.0 9.6e-13 47.5 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|284165938|ref|YP_003404217.1| - 3.2e-06 26.8 0.0 6.4e-06 25.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|284165938|ref|YP_003404217.1| - 1.8e-05 24.0 0.0 3.7e-05 23.0 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|284165938|ref|YP_003404217.1| - 2.4e-05 23.8 0.0 4.2e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_AsnC-type PF13404.1 gi|284165938|ref|YP_003404217.1| - 0.0018 17.7 1.2 0.0051 16.3 0.0 2.5 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|284165938|ref|YP_003404217.1| - 0.019 14.5 0.0 0.061 13.0 0.0 1.9 1 0 0 1 1 1 0 MarR family HTH_39 PF14090.1 gi|284165938|ref|YP_003404217.1| - 0.09 12.2 0.0 0.19 11.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.17 gi|284165938|ref|YP_003404217.1| - 0.12 12.0 0.0 0.3 10.8 0.0 1.6 1 0 0 1 1 1 0 MarR family Fe_dep_repress PF01325.14 gi|284165938|ref|YP_003404217.1| - 0.12 12.2 0.0 0.27 11.2 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain PHD PF00628.24 gi|284165939|ref|YP_003404218.1| - 0.0001 21.9 10.6 0.0002 20.9 7.4 1.5 1 1 0 1 1 1 1 PHD-finger C1_1 PF00130.17 gi|284165939|ref|YP_003404218.1| - 0.0001 21.9 6.1 0.0001 21.9 4.2 1.8 1 1 1 2 2 2 1 Phorbol esters/diacylglycerol binding domain (C1 domain) Prok-RING_1 PF14446.1 gi|284165939|ref|YP_003404218.1| - 0.0019 17.9 11.0 0.0026 17.4 7.6 1.3 1 1 0 1 1 1 1 Prokaryotic RING finger family 1 Tnp_zf-ribbon_2 PF13842.1 gi|284165939|ref|YP_003404218.1| - 0.013 15.8 9.7 0.44 10.9 3.2 2.1 1 1 1 2 2 2 0 DDE_Tnp_1-like zinc-ribbon RNA_pol_N PF01194.12 gi|284165939|ref|YP_003404218.1| - 0.021 14.8 2.8 0.15 12.1 0.4 2.1 2 0 0 2 2 2 0 RNA polymerases N / 8 kDa subunit YhfH PF14149.1 gi|284165939|ref|YP_003404218.1| - 0.063 13.0 12.6 0.092 12.5 5.0 2.2 2 0 0 2 2 2 0 YhfH-like protein DZR PF12773.2 gi|284165939|ref|YP_003404218.1| - 0.065 13.0 9.5 0.92 9.3 6.9 1.9 1 1 0 1 1 1 0 Double zinc ribbon Desulfoferrod_N PF06397.7 gi|284165939|ref|YP_003404218.1| - 0.12 11.8 0.3 0.12 11.8 0.2 2.2 3 0 0 3 3 3 0 Desulfoferrodoxin, N-terminal domain DUF2576 PF10845.3 gi|284165939|ref|YP_003404218.1| - 0.12 11.5 1.9 0.1 11.7 0.6 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2576) DNA_RNApol_7kD PF03604.8 gi|284165939|ref|YP_003404218.1| - 0.16 11.5 10.1 0.96 8.9 4.4 2.7 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit OrfB_Zn_ribbon PF07282.6 gi|284165939|ref|YP_003404218.1| - 0.38 10.4 11.2 1.9 8.2 2.7 2.1 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-PHD-like PF15446.1 gi|284165939|ref|YP_003404218.1| - 0.46 9.7 6.0 0.84 8.9 4.2 1.4 1 1 0 1 1 1 0 PHD/FYVE-zinc-finger like domain Sgf11 PF08209.6 gi|284165939|ref|YP_003404218.1| - 1.1 8.6 8.4 0.92 8.8 0.1 3.0 2 1 1 3 3 3 0 Sgf11 (transcriptional regulation protein) VESA1_N PF12785.2 gi|284165939|ref|YP_003404218.1| - 1.1 8.0 6.1 1.2 8.0 4.2 1.0 1 0 0 1 1 1 0 Variant erythrocyte surface antigen-1 zf-UBR PF02207.15 gi|284165939|ref|YP_003404218.1| - 1.2 8.9 10.2 3.9 7.2 3.8 2.0 1 1 1 2 2 2 0 Putative zinc finger in N-recognin (UBR box) C1_3 PF07649.7 gi|284165939|ref|YP_003404218.1| - 1.7 8.7 10.3 7.9 6.6 4.2 2.4 2 1 0 2 2 2 0 C1-like domain DUF1272 PF06906.6 gi|284165939|ref|YP_003404218.1| - 1.8 8.4 12.3 1.4 8.7 4.8 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) Rep_fac-A_C PF08646.5 gi|284165939|ref|YP_003404218.1| - 2.4 7.8 7.3 5.7 6.6 5.1 1.6 1 1 0 1 1 1 0 Replication factor-A C terminal domain zf-RING-like PF08746.6 gi|284165939|ref|YP_003404218.1| - 3.3 7.8 12.4 27 4.8 8.7 2.2 1 1 1 2 2 2 0 RING-like domain Ribosomal_S27e PF01667.12 gi|284165939|ref|YP_003404218.1| - 3.4 7.2 7.8 1.4 8.5 2.4 2.4 1 1 1 2 2 2 0 Ribosomal protein S27 DUF4206 PF13901.1 gi|284165939|ref|YP_003404218.1| - 4.2 6.8 10.8 6.3 6.2 7.5 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4206) PHD_2 PF13831.1 gi|284165939|ref|YP_003404218.1| - 4.8 6.5 13.7 0.37 10.1 4.3 2.5 2 1 0 2 2 2 0 PHD-finger Zn_Tnp_IS1595 PF12760.2 gi|284165939|ref|YP_003404218.1| - 4.9 7.0 12.9 4.8 7.0 6.9 1.9 1 1 1 2 2 2 0 Transposase zinc-ribbon domain NOB1_Zn_bind PF08772.6 gi|284165939|ref|YP_003404218.1| - 5.6 6.8 7.4 0.62 9.9 1.8 1.7 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like HypA PF01155.14 gi|284165939|ref|YP_003404218.1| - 6.3 6.5 10.7 30 4.3 7.4 1.9 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-RING_2 PF13639.1 gi|284165939|ref|YP_003404218.1| - 7.6 6.4 11.3 41 4.1 8.1 1.8 1 1 1 2 2 2 0 Ring finger domain zf-NADH-PPase PF09297.6 gi|284165939|ref|YP_003404218.1| - 8.7 5.9 10.5 16 5.1 0.2 3.2 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain HTH_10 PF04967.7 gi|284165940|ref|YP_003404219.1| - 3.4e-20 71.3 0.0 5.2e-20 70.7 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.7 gi|284165940|ref|YP_003404219.1| - 0.0019 17.5 0.0 0.22 10.9 0.0 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.11 gi|284165940|ref|YP_003404219.1| - 0.0074 15.5 0.0 0.015 14.6 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_20 PF12840.2 gi|284165940|ref|YP_003404219.1| - 0.0075 16.0 0.0 0.018 14.8 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|284165940|ref|YP_003404219.1| - 0.011 15.3 0.0 0.021 14.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|284165940|ref|YP_003404219.1| - 0.019 14.6 0.1 0.058 13.0 0.0 1.9 2 0 0 2 2 2 0 MarR family tRNA-synt_1b PF00579.20 gi|284165941|ref|YP_003404220.1| - 2.3e-49 168.1 0.0 3.1e-49 167.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.13 gi|284165941|ref|YP_003404220.1| - 0.04 12.5 0.0 6.8 5.2 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (K) DNA_gyraseB_C PF00986.16 gi|284165941|ref|YP_003404220.1| - 0.046 13.4 0.1 0.1 12.3 0.1 1.5 1 0 0 1 1 1 0 DNA gyrase B subunit, carboxyl terminus Ribosomal_L31e PF01198.14 gi|284165941|ref|YP_003404220.1| - 0.12 12.0 0.0 0.29 10.8 0.0 1.6 1 0 0 1 1 1 0 Ribosomal protein L31e DUF137 PF02006.11 gi|284165944|ref|YP_003404223.1| - 9.5e-75 249.8 2.8 1.2e-74 249.5 2.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF137 Phage_GPD PF05954.6 gi|284165944|ref|YP_003404223.1| - 0.058 12.5 0.0 0.1 11.7 0.0 1.4 1 0 0 1 1 1 0 Phage late control gene D protein (GPD) Methyltransf_31 PF13847.1 gi|284165945|ref|YP_003404224.1| - 4.2e-18 65.3 0.0 4.9e-18 65.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|284165945|ref|YP_003404224.1| - 6.9e-17 61.7 0.0 1e-16 61.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|284165945|ref|YP_003404224.1| - 1.3e-16 61.2 0.0 1.9e-16 60.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|284165945|ref|YP_003404224.1| - 6.3e-16 58.6 0.0 1e-15 57.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|284165945|ref|YP_003404224.1| - 7.2e-16 57.9 0.0 9.5e-16 57.6 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|284165945|ref|YP_003404224.1| - 5.1e-13 49.0 0.0 7.2e-13 48.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|284165945|ref|YP_003404224.1| - 3.6e-12 46.2 0.0 5.1e-12 45.7 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.1 gi|284165945|ref|YP_003404224.1| - 1.9e-11 44.2 0.0 4.6e-11 42.9 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|284165945|ref|YP_003404224.1| - 3.1e-09 36.8 0.3 8.2e-09 35.5 0.2 1.7 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|284165945|ref|YP_003404224.1| - 1.7e-05 24.0 0.0 2.1e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.9 gi|284165945|ref|YP_003404224.1| - 4e-05 23.0 0.0 9.4e-05 21.8 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase small domain RrnaAD PF00398.15 gi|284165945|ref|YP_003404224.1| - 0.00027 20.0 0.0 0.00036 19.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase GCD14 PF08704.5 gi|284165945|ref|YP_003404224.1| - 0.00093 18.7 0.0 0.0012 18.3 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_4 PF02390.12 gi|284165945|ref|YP_003404224.1| - 0.00098 18.2 0.0 0.0015 17.6 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_24 PF13578.1 gi|284165945|ref|YP_003404224.1| - 0.0021 18.8 0.1 0.0047 17.7 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|284165945|ref|YP_003404224.1| - 0.051 12.6 0.0 0.082 11.9 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_8 PF05148.10 gi|284165945|ref|YP_003404224.1| - 0.054 13.1 0.0 0.1 12.2 0.0 1.4 2 0 0 2 2 2 0 Hypothetical methyltransferase PrmA PF06325.8 gi|284165945|ref|YP_003404224.1| - 0.079 12.0 0.0 0.15 11.1 0.0 1.4 1 1 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) FtsJ PF01728.14 gi|284165945|ref|YP_003404224.1| - 0.13 12.2 0.0 0.19 11.7 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase DUF1508 PF07411.7 gi|284165946|ref|YP_003404225.1| - 5.9e-42 140.8 0.0 0.00023 20.5 0.0 11.6 12 0 0 12 12 12 9 Domain of unknown function (DUF1508) DDE_Tnp_IS240 PF13610.1 gi|284165946|ref|YP_003404225.1| - 3.9e-09 36.6 8.7 0.58 10.1 0.0 8.0 9 0 0 9 9 9 3 DDE domain MalF_P2 PF14785.1 gi|284165946|ref|YP_003404225.1| - 0.0013 18.6 0.0 12 5.7 0.0 4.6 4 2 1 5 5 5 2 Maltose transport system permease protein MalF P2 domain HlyIII PF03006.15 gi|284165946|ref|YP_003404225.1| - 0.023 14.1 3.8 0.037 13.4 2.6 1.2 1 0 0 1 1 1 0 Haemolysin-III related SPOR PF05036.8 gi|284165946|ref|YP_003404225.1| - 0.053 13.6 3.9 17 5.6 0.0 4.4 6 0 0 6 6 6 0 Sporulation related domain DUF2914 PF11141.3 gi|284165946|ref|YP_003404225.1| - 0.34 10.4 15.6 3.2 7.3 0.1 5.9 6 0 0 6 6 6 0 Protein of unknown function (DUF2914) CelD_N PF02927.9 gi|284165946|ref|YP_003404225.1| - 0.42 10.9 9.1 29 4.9 0.0 6.9 9 1 1 10 10 10 0 N-terminal ig-like domain of cellulase GHMP_kinases_N PF00288.21 gi|284165947|ref|YP_003404226.1| - 2.3e-11 43.5 0.6 5e-11 42.5 0.4 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain Abhydrolase_5 PF12695.2 gi|284165948|ref|YP_003404227.1| - 3.5e-06 26.8 0.4 5e-06 26.3 0.2 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|284165948|ref|YP_003404227.1| - 1.5e-05 25.0 0.3 1.9e-05 24.6 0.2 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family LCAT PF02450.10 gi|284165948|ref|YP_003404227.1| - 0.005 15.8 0.0 0.0069 15.3 0.0 1.2 1 0 0 1 1 1 1 Lecithin:cholesterol acyltransferase Lipase PF00151.14 gi|284165948|ref|YP_003404227.1| - 0.0067 15.6 0.0 0.0089 15.2 0.0 1.1 1 0 0 1 1 1 1 Lipase DUF676 PF05057.9 gi|284165948|ref|YP_003404227.1| - 0.014 14.7 0.0 0.02 14.1 0.0 1.1 1 0 0 1 1 1 0 Putative serine esterase (DUF676) Lipase_3 PF01764.20 gi|284165948|ref|YP_003404227.1| - 0.08 12.5 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Lipase (class 3) tRNA-synt_2 PF00152.15 gi|284165949|ref|YP_003404228.1| - 2.3e-87 292.9 0.0 2.9e-87 292.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|284165949|ref|YP_003404228.1| - 1.4e-14 53.6 0.2 2.6e-14 52.8 0.1 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|284165949|ref|YP_003404228.1| - 0.0011 18.2 0.1 0.14 11.3 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) SIR2 PF02146.12 gi|284165950|ref|YP_003404229.1| - 3.7e-36 124.5 0.0 5e-18 65.4 0.0 2.1 2 0 0 2 2 2 2 Sir2 family PcrB PF01884.12 gi|284165951|ref|YP_003404230.1| - 2e-46 158.1 0.1 2.3e-46 157.9 0.1 1.0 1 0 0 1 1 1 1 PcrB family CRF-BP PF05428.6 gi|284165951|ref|YP_003404230.1| - 0.18 10.6 0.0 0.26 10.0 0.0 1.2 1 0 0 1 1 1 0 Corticotropin-releasing factor binding protein (CRF-BP) YtkA PF13115.1 gi|284165953|ref|YP_003404232.1| - 4.3e-14 52.6 0.4 7.3e-14 51.8 0.3 1.4 1 0 0 1 1 1 1 YtkA-like Filamin PF00630.14 gi|284165953|ref|YP_003404232.1| - 0.0097 16.4 0.0 0.015 15.8 0.0 1.3 1 0 0 1 1 1 1 Filamin/ABP280 repeat FixH PF05751.6 gi|284165953|ref|YP_003404232.1| - 0.056 13.2 0.0 0.056 13.2 0.0 1.5 2 0 0 2 2 2 0 FixH Aminotran_4 PF01063.14 gi|284165954|ref|YP_003404233.1| - 4.5e-47 160.4 0.0 5.4e-47 160.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class IV HTH_20 PF12840.2 gi|284165955|ref|YP_003404234.1| - 4.2e-09 36.0 2.2 6.1e-05 22.7 0.2 2.2 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.15 gi|284165955|ref|YP_003404234.1| - 6.1e-08 32.2 0.1 1e-06 28.2 0.1 2.4 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|284165955|ref|YP_003404234.1| - 9.9e-07 28.3 1.0 0.013 15.1 0.1 2.4 2 0 0 2 2 2 2 MarR family TrmB PF01978.14 gi|284165955|ref|YP_003404234.1| - 6.3e-06 25.8 0.2 8.8e-05 22.1 0.0 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|284165955|ref|YP_003404234.1| - 1.3e-05 24.4 0.1 0.019 14.3 0.1 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|284165955|ref|YP_003404234.1| - 0.0018 18.5 0.2 0.069 13.4 0.0 2.4 2 1 0 2 2 2 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|284165955|ref|YP_003404234.1| - 0.0055 16.2 0.1 0.014 14.9 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_10 PF04967.7 gi|284165955|ref|YP_003404234.1| - 0.023 14.2 0.0 0.067 12.7 0.0 1.7 2 0 0 2 2 2 0 HTH DNA binding domain DUF2513 PF10711.4 gi|284165955|ref|YP_003404234.1| - 0.052 13.6 0.0 12 6.0 0.0 2.2 2 0 0 2 2 2 0 Hypothetical protein (DUF2513) HTH_7 PF02796.10 gi|284165955|ref|YP_003404234.1| - 0.089 12.6 0.0 0.2 11.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Tetraspannin PF00335.15 gi|284165956|ref|YP_003404235.1| - 0.0017 17.6 0.0 0.0019 17.5 0.0 1.1 1 0 0 1 1 1 1 Tetraspanin family 7TMR-DISM_7TM PF07695.6 gi|284165956|ref|YP_003404235.1| - 0.005 16.5 4.4 0.0059 16.2 3.1 1.1 1 0 0 1 1 1 1 7TM diverse intracellular signalling Glucan_synthase PF02364.10 gi|284165956|ref|YP_003404235.1| - 0.085 10.7 0.4 0.099 10.4 0.3 1.0 1 0 0 1 1 1 0 1,3-beta-glucan synthase component CBAH PF02275.13 gi|284165956|ref|YP_003404235.1| - 0.12 11.7 0.0 0.14 11.5 0.0 1.1 1 0 0 1 1 1 0 Linear amide C-N hydrolases, choloylglycine hydrolase family DUF3995 PF13160.1 gi|284165956|ref|YP_003404235.1| - 0.58 10.2 9.2 0.28 11.2 0.7 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3995) MARVEL PF01284.18 gi|284165956|ref|YP_003404235.1| - 2.7 7.7 6.8 3.6 7.3 4.7 1.1 1 0 0 1 1 1 0 Membrane-associating domain SelR PF01641.13 gi|284165957|ref|YP_003404236.1| - 1.2e-51 173.5 0.0 1.4e-51 173.4 0.0 1.0 1 0 0 1 1 1 1 SelR domain DZR PF12773.2 gi|284165957|ref|YP_003404236.1| - 0.021 14.6 1.7 0.17 11.7 1.2 2.3 1 1 0 1 1 1 0 Double zinc ribbon NinF PF05810.7 gi|284165957|ref|YP_003404236.1| - 0.052 13.3 0.1 9.1 6.1 0.0 2.4 2 0 0 2 2 2 0 NinF protein Yippee-Mis18 PF03226.9 gi|284165957|ref|YP_003404236.1| - 0.066 13.2 0.3 0.21 11.6 0.2 1.8 1 1 0 1 1 1 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly DUF2072 PF09845.4 gi|284165957|ref|YP_003404236.1| - 0.07 13.0 1.3 0.14 12.0 0.6 1.7 1 1 1 2 2 2 0 Zn-ribbon containing protein (DUF2072) TF_Zn_Ribbon PF08271.7 gi|284165957|ref|YP_003404236.1| - 0.082 12.2 3.6 5.2 6.4 0.1 3.1 3 0 0 3 3 3 0 TFIIB zinc-binding DUF2296 PF10058.4 gi|284165957|ref|YP_003404236.1| - 0.11 12.2 0.5 5.4 6.8 0.0 2.2 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) DUF2082 PF09855.4 gi|284165957|ref|YP_003404236.1| - 0.12 12.2 0.2 0.77 9.6 0.0 2.0 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) DNA_RNApol_7kD PF03604.8 gi|284165957|ref|YP_003404236.1| - 0.4 10.1 1.9 6.3 6.3 0.1 2.5 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit RRN7 PF11781.3 gi|284165957|ref|YP_003404236.1| - 1.3 8.5 6.8 5.7 6.5 0.3 2.9 2 1 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-ribbon_3 PF13248.1 gi|284165957|ref|YP_003404236.1| - 4.5 6.5 6.1 20 4.5 0.1 2.7 2 1 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|284165958|ref|YP_003404237.1| - 0.015 14.9 1.6 0.27 10.8 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|284165958|ref|YP_003404237.1| - 0.017 14.7 1.7 0.32 10.7 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|284165958|ref|YP_003404237.1| - 0.026 14.3 0.6 0.033 13.9 0.4 1.3 1 1 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|284165958|ref|YP_003404237.1| - 0.039 13.1 0.8 1.2 8.4 0.1 2.0 2 0 0 2 2 2 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|284165958|ref|YP_003404237.1| - 0.04 13.6 0.2 1.3 8.7 0.0 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit HypA PF01155.14 gi|284165958|ref|YP_003404237.1| - 0.044 13.4 0.1 0.048 13.3 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family PADR1 PF08063.7 gi|284165958|ref|YP_003404237.1| - 0.067 12.6 0.3 0.57 9.6 0.0 2.0 2 0 0 2 2 2 0 PADR1 (NUC008) domain zf-tcix PF14952.1 gi|284165958|ref|YP_003404237.1| - 0.12 11.6 0.6 1.8 7.9 0.0 2.1 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding TF_Zn_Ribbon PF08271.7 gi|284165958|ref|YP_003404237.1| - 0.13 11.6 2.4 0.95 8.8 0.1 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding Zn_Tnp_IS1 PF03811.8 gi|284165958|ref|YP_003404237.1| - 0.2 11.1 0.3 0.2 11.1 0.2 2.2 2 0 0 2 2 2 0 InsA N-terminal domain A2L_zn_ribbon PF08792.5 gi|284165958|ref|YP_003404237.1| - 0.22 11.0 1.7 5.9 6.4 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain DUF35_N PF12172.3 gi|284165958|ref|YP_003404237.1| - 0.43 10.5 2.7 5.2 7.1 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn-ribbon_8 PF09723.5 gi|284165958|ref|YP_003404237.1| - 0.43 10.5 5.6 6.4 6.8 3.9 2.1 1 1 0 1 1 1 0 Zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|284165958|ref|YP_003404237.1| - 0.76 9.3 3.1 1.5 8.3 0.4 2.0 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit UPF0547 PF10571.4 gi|284165958|ref|YP_003404237.1| - 1.2 8.9 5.3 9.4 6.0 0.2 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Saccharop_dh_N PF04455.7 gi|284165960|ref|YP_003404239.1| - 5.5e-34 116.3 0.0 1.1e-33 115.3 0.0 1.5 1 0 0 1 1 1 1 LOR/SDH bifunctional enzyme conserved region TPP_enzyme_M PF00205.17 gi|284165960|ref|YP_003404239.1| - 3.5e-05 23.5 0.1 0.0047 16.6 0.0 2.4 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, central domain DS PF01916.12 gi|284165960|ref|YP_003404239.1| - 0.014 14.4 0.0 0.052 12.6 0.0 1.8 1 1 1 2 2 2 0 Deoxyhypusine synthase PQQ_2 PF13360.1 gi|284165961|ref|YP_003404240.1| - 2.5e-30 105.6 2.8 1.2e-12 47.7 0.0 3.2 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.1 gi|284165961|ref|YP_003404240.1| - 6e-20 70.8 15.5 6.5e-07 29.4 0.1 7.3 8 0 0 8 8 8 4 PQQ-like domain PQQ PF01011.16 gi|284165961|ref|YP_003404240.1| - 1.2e-13 49.8 5.5 0.0052 16.2 0.0 6.7 7 0 0 7 7 7 4 PQQ enzyme repeat NHL PF01436.16 gi|284165961|ref|YP_003404240.1| - 0.21 11.6 6.7 3.7 7.6 0.2 4.2 4 0 0 4 4 4 0 NHL repeat CarboxypepD_reg PF13620.1 gi|284165962|ref|YP_003404241.1| - 3.9e-09 36.4 2.6 9e-05 22.4 0.0 3.0 1 1 1 2 2 2 2 Carboxypeptidase regulatory-like domain PEGA PF08308.6 gi|284165962|ref|YP_003404241.1| - 6.7e-07 29.0 0.1 0.00084 19.0 0.0 2.9 2 0 0 2 2 2 2 PEGA domain BiPBP_C PF06832.7 gi|284165962|ref|YP_003404241.1| - 0.01 15.7 0.0 0.052 13.4 0.0 2.1 2 0 0 2 2 2 0 Penicillin-Binding Protein C-terminus Family Big_1 PF02369.11 gi|284165962|ref|YP_003404241.1| - 0.011 15.6 1.3 2 8.3 0.6 3.3 3 0 0 3 3 3 0 Bacterial Ig-like domain (group 1) DUF1533 PF07550.6 gi|284165962|ref|YP_003404241.1| - 0.019 14.9 0.0 0.061 13.3 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF1533) HTH_10 PF04967.7 gi|284165966|ref|YP_003404245.1| - 1.3e-19 69.5 0.1 2.9e-19 68.3 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.1 gi|284165966|ref|YP_003404245.1| - 1.7e-15 57.7 3.2 2.7e-15 57.1 0.3 2.7 2 1 1 3 3 3 1 GAF domain GAF_3 PF13492.1 gi|284165966|ref|YP_003404245.1| - 2.5e-08 34.0 0.4 1.2e-07 31.9 0.1 2.4 3 1 0 3 3 3 1 GAF domain PAS_4 PF08448.5 gi|284165966|ref|YP_003404245.1| - 2.8e-05 24.1 2.4 0.0002 21.3 0.1 3.1 2 1 0 2 2 2 1 PAS fold Sigma70_r4 PF04545.11 gi|284165966|ref|YP_003404245.1| - 6.2e-05 22.2 0.6 0.00029 20.0 0.0 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 GAF PF01590.21 gi|284165966|ref|YP_003404245.1| - 0.00019 21.5 0.2 0.00048 20.2 0.1 1.8 1 0 0 1 1 1 1 GAF domain HTH_11 PF08279.7 gi|284165966|ref|YP_003404245.1| - 0.0013 18.3 0.0 0.003 17.1 0.0 1.6 1 0 0 1 1 1 1 HTH domain PAS_9 PF13426.1 gi|284165966|ref|YP_003404245.1| - 0.0046 17.3 0.0 0.019 15.3 0.0 2.1 2 0 0 2 2 2 1 PAS domain DUF134 PF02001.11 gi|284165966|ref|YP_003404245.1| - 0.014 15.2 0.0 0.034 14.0 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function DUF134 PAS PF00989.19 gi|284165966|ref|YP_003404245.1| - 0.015 15.0 0.2 0.064 13.0 0.0 2.2 2 1 0 2 2 2 0 PAS fold UPF0122 PF04297.9 gi|284165966|ref|YP_003404245.1| - 0.016 15.1 0.0 0.036 14.0 0.0 1.5 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like GerE PF00196.14 gi|284165966|ref|YP_003404245.1| - 0.059 12.6 1.0 0.93 8.8 0.0 3.1 4 0 0 4 4 4 0 Bacterial regulatory proteins, luxR family Hemerythrin PF01814.18 gi|284165966|ref|YP_003404245.1| - 0.085 13.0 3.8 0.064 13.4 1.1 2.0 2 0 0 2 2 2 0 Hemerythrin HHE cation binding domain DUF1492 PF07374.6 gi|284165966|ref|YP_003404245.1| - 0.17 12.0 0.1 1.4 9.0 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1492) SQS_PSY PF00494.14 gi|284165967|ref|YP_003404246.1| - 2.1e-63 214.1 5.6 2.6e-63 213.8 3.9 1.0 1 0 0 1 1 1 1 Squalene/phytoene synthase Rad50_zn_hook PF04423.9 gi|284165969|ref|YP_003404248.1| - 0.14 11.6 0.1 0.2 11.1 0.1 1.3 1 0 0 1 1 1 0 Rad50 zinc hook motif DUF422 PF04240.7 gi|284165970|ref|YP_003404249.1| - 3.8e-69 232.3 18.2 5e-69 231.9 12.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF422) UbiA PF01040.13 gi|284165971|ref|YP_003404250.1| - 5.4e-31 107.7 24.7 7.2e-31 107.3 17.1 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF4231 PF14015.1 gi|284165971|ref|YP_003404250.1| - 0.22 11.5 5.3 2.7 8.0 0.0 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF4231) Amino_oxidase PF01593.19 gi|284165972|ref|YP_003404251.1| - 6.2e-20 71.6 0.2 4.2e-19 68.9 0.1 1.9 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase DAO PF01266.19 gi|284165972|ref|YP_003404251.1| - 6.7e-17 61.4 0.0 9.1e-09 34.6 0.0 2.6 2 1 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|284165972|ref|YP_003404251.1| - 1.8e-16 59.9 0.1 4.9e-16 58.5 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|284165972|ref|YP_003404251.1| - 1.5e-06 28.4 0.1 5.9e-05 23.2 0.1 2.6 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|284165972|ref|YP_003404251.1| - 3.7e-06 26.0 2.8 5.9e-06 25.3 2.0 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.22 gi|284165972|ref|YP_003404251.1| - 6.4e-06 26.4 1.9 5e-05 23.6 0.4 2.9 3 1 1 4 4 4 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|284165972|ref|YP_003404251.1| - 9.4e-06 25.6 0.3 2e-05 24.6 0.2 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|284165972|ref|YP_003404251.1| - 4.8e-05 22.5 0.3 7.3e-05 21.9 0.2 1.2 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|284165972|ref|YP_003404251.1| - 0.0001 21.5 0.0 0.00016 20.9 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|284165972|ref|YP_003404251.1| - 0.00011 20.8 0.1 0.00059 18.4 0.9 1.6 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.12 gi|284165972|ref|YP_003404251.1| - 0.00034 19.7 0.7 0.00058 19.0 0.5 1.3 1 0 0 1 1 1 1 Thi4 family Strep_67kDa_ant PF06100.6 gi|284165972|ref|YP_003404251.1| - 0.00089 17.7 0.0 0.0012 17.3 0.0 1.1 1 0 0 1 1 1 1 Streptococcal 67 kDa myosin-cross-reactive antigen like family IlvN PF07991.7 gi|284165972|ref|YP_003404251.1| - 0.01 15.2 0.1 0.017 14.5 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain GIDA PF01134.17 gi|284165972|ref|YP_003404251.1| - 0.015 14.2 1.6 0.021 13.6 1.1 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A 3HCDH_N PF02737.13 gi|284165972|ref|YP_003404251.1| - 0.015 14.9 0.4 0.024 14.2 0.3 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|284165972|ref|YP_003404251.1| - 0.022 14.5 0.1 0.034 13.8 0.1 1.3 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|284165972|ref|YP_003404251.1| - 0.023 14.1 0.1 0.041 13.3 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.1 gi|284165972|ref|YP_003404251.1| - 0.057 13.6 0.0 0.1 12.8 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding TrkA_N PF02254.13 gi|284165972|ref|YP_003404251.1| - 0.18 11.7 0.1 0.33 10.9 0.1 1.4 1 0 0 1 1 1 0 TrkA-N domain AlaDh_PNT_C PF01262.16 gi|284165972|ref|YP_003404251.1| - 0.19 11.2 0.2 0.33 10.5 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Trp_halogenase PF04820.9 gi|284165972|ref|YP_003404251.1| - 0.55 8.7 1.2 0.78 8.2 0.8 1.1 1 0 0 1 1 1 0 Tryptophan halogenase Form_Nir_trans PF01226.12 gi|284165973|ref|YP_003404252.1| - 9.4e-53 178.6 16.4 1.2e-52 178.3 11.4 1.1 1 0 0 1 1 1 1 Formate/nitrite transporter Usp PF00582.21 gi|284165973|ref|YP_003404252.1| - 1.1e-20 74.2 15.0 3.3e-12 46.7 0.3 3.1 3 0 0 3 3 3 2 Universal stress protein family Lipase_GDSL_2 PF13472.1 gi|284165973|ref|YP_003404252.1| - 0.025 14.7 0.1 0.12 12.5 0.0 1.9 1 1 1 2 2 2 0 GDSL-like Lipase/Acylhydrolase family CAAD PF14159.1 gi|284165973|ref|YP_003404252.1| - 9 6.0 6.9 0.69 9.5 0.1 2.4 2 1 1 3 3 3 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase Radical_SAM PF04055.16 gi|284165974|ref|YP_003404253.1| - 2e-23 83.4 0.1 9.7e-23 81.1 0.0 2.2 2 0 0 2 2 2 1 Radical SAM superfamily Acetyltransf_1 PF00583.19 gi|284165974|ref|YP_003404253.1| - 3.5e-10 39.7 0.2 8.9e-10 38.4 0.1 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|284165974|ref|YP_003404253.1| - 0.0075 16.3 0.1 0.036 14.1 0.0 2.3 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|284165974|ref|YP_003404253.1| - 0.021 14.9 0.0 0.063 13.4 0.0 1.9 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain AF0941-like PF14591.1 gi|284165974|ref|YP_003404253.1| - 0.055 13.5 0.0 0.16 11.9 0.0 1.8 1 0 0 1 1 1 0 AF0941-like TENA_THI-4 PF03070.11 gi|284165975|ref|YP_003404254.1| - 1e-48 165.8 2.9 1.2e-48 165.7 2.0 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family Rubi_NSP_C PF12601.3 gi|284165976|ref|YP_003404255.1| - 0.19 11.6 3.9 0.29 11.0 0.3 2.2 1 1 1 2 2 2 0 Rubivirus non-structural protein Oxidored_q1 PF00361.15 gi|284165977|ref|YP_003404256.1| - 8.7e-64 215.3 9.1 8.7e-64 215.3 6.3 2.4 2 0 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains DUF4040 PF13244.1 gi|284165977|ref|YP_003404256.1| - 5e-15 55.2 9.4 5e-15 55.2 6.5 4.7 5 0 0 5 5 5 1 Domain of unknown function (DUF4040) Oxidored_q1_N PF00662.15 gi|284165977|ref|YP_003404256.1| - 2.2e-09 36.7 0.0 1e-08 34.5 0.0 2.2 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus MnhB PF04039.8 gi|284165978|ref|YP_003404257.1| - 3.8e-24 85.1 13.0 4.2e-16 59.1 2.9 2.0 1 1 1 2 2 2 2 Domain related to MnhB subunit of Na+/H+ antiporter DUF1656 PF07869.7 gi|284165978|ref|YP_003404257.1| - 0.072 12.8 5.1 2.8 7.7 0.1 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF1656) Oxidored_q2 PF00420.19 gi|284165979|ref|YP_003404258.1| - 2.5e-25 87.8 0.9 3.2e-25 87.5 0.6 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L TrbC PF04956.8 gi|284165979|ref|YP_003404258.1| - 2.5 8.1 7.9 2 8.4 3.1 2.0 2 0 0 2 2 2 0 TrbC/VIRB2 family Oxidored_q1 PF00361.15 gi|284165980|ref|YP_003404259.1| - 7.5e-46 156.5 11.0 1.8e-25 89.7 1.2 2.6 2 1 1 3 3 3 2 NADH-Ubiquinone/plastoquinone (complex I), various chains NADHdeh_related PF10125.4 gi|284165980|ref|YP_003404259.1| - 8.6e-05 21.8 2.4 8.6e-05 21.8 1.7 2.6 2 0 0 2 2 2 2 NADH dehydrogenase I, subunit N related protein DUF766 PF05571.7 gi|284165980|ref|YP_003404259.1| - 0.7 9.1 7.7 4.8 6.3 2.3 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF766) MNHE PF01899.11 gi|284165981|ref|YP_003404260.1| - 3.6e-41 140.4 0.8 4.2e-41 140.1 0.5 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit MrpF_PhaF PF04066.8 gi|284165982|ref|YP_003404261.1| - 2e-16 59.9 7.3 3.8e-16 59.0 5.0 1.5 1 0 0 1 1 1 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) PhaG_MnhG_YufB PF03334.9 gi|284165983|ref|YP_003404262.1| - 2.4e-25 88.3 7.5 2.9e-25 88.0 5.2 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit DUF4383 PF14325.1 gi|284165983|ref|YP_003404262.1| - 0.17 11.8 5.8 0.21 11.5 4.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4383) FxsA PF04186.8 gi|284165983|ref|YP_003404262.1| - 0.3 10.6 3.5 0.41 10.2 2.5 1.1 1 0 0 1 1 1 0 FxsA cytoplasmic membrane protein DUF3816 PF12822.2 gi|284165983|ref|YP_003404262.1| - 2.6 7.9 8.7 3 7.7 6.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3816) Sdh_cyt PF01127.17 gi|284165983|ref|YP_003404262.1| - 6.2 6.6 8.1 1.1 9.1 2.5 1.7 1 1 1 2 2 2 0 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HTH_10 PF04967.7 gi|284165984|ref|YP_003404263.1| - 1.1e-14 53.7 0.0 1.6e-14 53.2 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_37 PF13744.1 gi|284165984|ref|YP_003404263.1| - 0.0059 16.3 0.0 0.01 15.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|284165984|ref|YP_003404263.1| - 0.0089 15.3 0.0 0.016 14.5 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|284165984|ref|YP_003404263.1| - 0.019 14.6 0.1 0.037 13.7 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.5 gi|284165984|ref|YP_003404263.1| - 0.056 13.0 0.0 0.099 12.2 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain SHOCT PF09851.4 gi|284165986|ref|YP_003404265.1| - 3.5e-09 35.8 3.6 5.8e-09 35.1 2.5 1.4 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.6 gi|284165986|ref|YP_003404265.1| - 0.00028 20.5 8.1 0.00042 20.0 5.1 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF1707) DUF3099 PF11298.3 gi|284165986|ref|YP_003404265.1| - 0.013 15.2 0.0 0.023 14.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3099) GvpG PF05120.7 gi|284165986|ref|YP_003404265.1| - 0.017 14.9 0.9 0.025 14.3 0.6 1.3 1 0 0 1 1 1 0 Gas vesicle protein G tRNA_anti-codon PF01336.20 gi|284165987|ref|YP_003404266.1| - 6.3e-11 41.9 0.0 1.4e-10 40.8 0.0 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1 PF00575.18 gi|284165987|ref|YP_003404266.1| - 2.1e-09 37.3 0.0 7.9e-09 35.4 0.0 2.0 1 0 0 1 1 1 1 S1 RNA binding domain tRNA_anti_2 PF13742.1 gi|284165987|ref|YP_003404266.1| - 0.0002 21.1 0.0 0.00051 19.8 0.0 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain BOF PF04076.8 gi|284165987|ref|YP_003404266.1| - 0.0047 16.7 0.1 0.016 14.9 0.0 2.0 2 0 0 2 2 2 1 Bacterial OB fold (BOF) protein Thiolase_C PF02803.13 gi|284165988|ref|YP_003404267.1| - 2.6e-09 36.5 0.1 5.6e-09 35.4 0.1 1.5 1 0 0 1 1 1 1 Thiolase, C-terminal domain Thiolase_N PF00108.18 gi|284165988|ref|YP_003404267.1| - 3.1e-08 32.9 0.4 1.4e-07 30.7 0.1 2.0 2 0 0 2 2 2 1 Thiolase, N-terminal domain ketoacyl-synt PF00109.21 gi|284165988|ref|YP_003404267.1| - 0.00054 19.5 5.9 0.00066 19.2 3.1 1.8 1 1 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.17 gi|284165988|ref|YP_003404267.1| - 0.0073 16.1 1.4 1.3 8.8 0.0 3.4 3 1 0 3 3 3 1 Beta-ketoacyl synthase, C-terminal domain ADH_zinc_N PF00107.21 gi|284165989|ref|YP_003404268.1| - 5.2e-29 100.4 0.4 8.5e-29 99.7 0.3 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|284165989|ref|YP_003404268.1| - 1e-22 81.3 0.1 2.3e-22 80.2 0.1 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|284165989|ref|YP_003404268.1| - 9.7e-10 38.1 0.0 8e-09 35.2 0.0 2.2 1 1 1 2 2 2 1 Alcohol dehydrogenase GroES-like domain AlaDh_PNT_C PF01262.16 gi|284165989|ref|YP_003404268.1| - 0.064 12.8 1.4 0.11 12.0 1.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain YjeF_N PF03853.10 gi|284165989|ref|YP_003404268.1| - 0.067 12.7 0.4 0.11 12.0 0.3 1.3 1 0 0 1 1 1 0 YjeF-related protein N-terminus NAD_binding_10 PF13460.1 gi|284165989|ref|YP_003404268.1| - 0.095 12.7 4.4 0.25 11.3 3.1 1.9 1 1 0 1 1 1 0 NADH(P)-binding 2-Hacid_dh_C PF02826.14 gi|284165989|ref|YP_003404268.1| - 0.12 11.5 0.0 0.25 10.4 0.0 1.5 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain tRNA_anti-codon PF01336.20 gi|284165990|ref|YP_003404269.1| - 0.067 13.0 0.1 0.1 12.4 0.1 1.6 1 1 0 1 1 1 0 OB-fold nucleic acid binding domain Lactamase_B_3 PF13483.1 gi|284165991|ref|YP_003404270.1| - 8.5e-21 74.3 0.4 1.1e-20 74.0 0.2 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|284165991|ref|YP_003404270.1| - 1.4e-13 50.8 0.1 1.8e-13 50.4 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|284165991|ref|YP_003404270.1| - 1.3e-09 37.9 4.9 3.8e-09 36.4 3.4 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily DUF457 PF04307.9 gi|284165992|ref|YP_003404271.1| - 2.9e-14 52.6 13.6 3.9e-14 52.2 9.4 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) OapA_N PF08525.6 gi|284165992|ref|YP_003404271.1| - 0.32 10.7 0.0 0.32 10.7 0.0 2.3 2 0 0 2 2 2 0 Opacity-associated protein A N-terminal motif OsmC PF02566.14 gi|284165993|ref|YP_003404272.1| - 4.5e-10 39.6 0.0 5.9e-10 39.2 0.0 1.2 1 0 0 1 1 1 1 OsmC-like protein DUF2271 PF10029.4 gi|284165993|ref|YP_003404272.1| - 0.013 14.9 0.0 0.022 14.2 0.0 1.3 1 0 0 1 1 1 0 Predicted periplasmic protein (DUF2271) Lactamase_B PF00753.22 gi|284165994|ref|YP_003404273.1| - 4.4e-13 49.3 8.5 4.4e-13 49.3 5.9 2.1 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|284165994|ref|YP_003404273.1| - 0.002 17.7 0.2 0.0022 17.5 0.1 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|284165994|ref|YP_003404273.1| - 0.024 14.3 0.8 0.071 12.8 0.6 2.0 1 1 0 1 1 1 0 Beta-lactamase superfamily domain DUF3006 PF11213.3 gi|284165995|ref|YP_003404274.1| - 5.5e-07 29.2 6.0 1.7e-05 24.5 4.2 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF3006) Hexapep PF00132.19 gi|284165996|ref|YP_003404275.1| - 7.8e-17 59.9 5.9 1e-07 31.0 0.8 3.3 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|284165996|ref|YP_003404275.1| - 7.1e-07 28.6 6.9 1.1e-06 28.0 0.5 3.0 2 1 1 3 3 3 2 Hexapeptide repeat of succinyl-transferase Phage_connect_1 PF05135.8 gi|284165999|ref|YP_003404278.1| - 0.087 13.0 0.2 0.087 13.0 0.1 1.1 1 0 0 1 1 1 0 Phage gp6-like head-tail connector protein DUF778 PF05608.7 gi|284165999|ref|YP_003404278.1| - 0.1 12.5 0.0 0.1 12.5 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF778) TylF PF05711.6 gi|284165999|ref|YP_003404278.1| - 0.14 11.1 0.0 0.15 11.0 0.0 1.0 1 0 0 1 1 1 0 Macrocin-O-methyltransferase (TylF) RHH_1 PF01402.16 gi|284165999|ref|YP_003404278.1| - 0.49 10.3 2.5 2.5 8.1 0.6 2.0 1 1 1 2 2 2 0 Ribbon-helix-helix protein, copG family BioY PF02632.9 gi|284166002|ref|YP_003404281.1| - 6e-40 136.3 16.4 1.1e-39 135.5 11.4 1.3 1 0 0 1 1 1 1 BioY family DUF3816 PF12822.2 gi|284166002|ref|YP_003404281.1| - 0.00031 20.6 17.1 0.0005 19.9 11.9 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF3816) ECF-ribofla_trS PF07155.7 gi|284166002|ref|YP_003404281.1| - 0.0036 17.0 15.2 0.099 12.3 10.5 2.3 1 1 0 1 1 1 1 ECF-type riboflavin transporter, S component 5TM-5TMR_LYT PF07694.7 gi|284166002|ref|YP_003404281.1| - 0.15 11.3 13.5 5.4 6.3 9.4 2.3 1 1 0 1 1 1 0 5TMR of 5TMR-LYT DUF2269 PF10027.4 gi|284166002|ref|YP_003404281.1| - 0.55 9.9 10.7 0.16 11.7 2.9 2.5 2 1 0 2 2 2 0 Predicted integral membrane protein (DUF2269) ABC_tran PF00005.22 gi|284166003|ref|YP_003404282.1| - 4.7e-30 104.6 0.0 6.1e-30 104.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284166003|ref|YP_003404282.1| - 1.5e-10 41.4 0.0 3e-05 24.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|284166003|ref|YP_003404282.1| - 7.3e-06 25.3 0.0 5.4e-05 22.5 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|284166003|ref|YP_003404282.1| - 6.5e-05 22.7 0.1 0.0004 20.2 0.1 2.0 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.1 gi|284166003|ref|YP_003404282.1| - 0.00047 19.3 0.0 0.62 9.0 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|284166003|ref|YP_003404282.1| - 0.0014 18.1 0.1 0.0026 17.2 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|284166003|ref|YP_003404282.1| - 0.0019 18.2 0.7 0.0033 17.4 0.5 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|284166003|ref|YP_003404282.1| - 0.007 15.7 0.8 0.042 13.2 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|284166003|ref|YP_003404282.1| - 0.008 16.5 0.0 0.011 16.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|284166003|ref|YP_003404282.1| - 0.0088 15.5 0.0 1.1 8.5 0.0 2.1 1 1 1 2 2 2 1 AAA-like domain Zeta_toxin PF06414.7 gi|284166003|ref|YP_003404282.1| - 0.021 13.9 0.0 0.032 13.3 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin NACHT PF05729.7 gi|284166003|ref|YP_003404282.1| - 0.021 14.4 0.0 0.034 13.7 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_30 PF13604.1 gi|284166003|ref|YP_003404282.1| - 0.028 14.0 0.0 0.049 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|284166003|ref|YP_003404282.1| - 0.029 13.8 0.1 0.048 13.0 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.1 gi|284166003|ref|YP_003404282.1| - 0.031 14.0 3.3 0.26 11.0 0.7 2.8 2 2 0 2 2 2 0 Part of AAA domain AAA_22 PF13401.1 gi|284166003|ref|YP_003404282.1| - 0.036 14.2 0.2 0.071 13.2 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|284166003|ref|YP_003404282.1| - 0.044 13.7 0.7 0.068 13.1 0.1 1.7 2 0 0 2 2 2 0 AAA domain UPF0079 PF02367.12 gi|284166003|ref|YP_003404282.1| - 0.045 13.3 0.1 0.078 12.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_13 PF13166.1 gi|284166003|ref|YP_003404282.1| - 0.051 12.0 0.0 3 6.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|284166003|ref|YP_003404282.1| - 0.074 12.9 0.3 0.11 12.3 0.2 1.6 1 1 0 1 1 1 0 AAA domain MutS_V PF00488.16 gi|284166003|ref|YP_003404282.1| - 0.14 11.5 0.0 0.25 10.7 0.0 1.4 1 0 0 1 1 1 0 MutS domain V DUF3584 PF12128.3 gi|284166003|ref|YP_003404282.1| - 0.14 9.4 0.1 0.2 8.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) CbiQ PF02361.11 gi|284166004|ref|YP_003404283.1| - 1.2e-15 57.6 7.8 8.7e-15 54.8 5.4 2.1 1 1 0 1 1 1 1 Cobalt transport protein Pyr_redox_2 PF07992.9 gi|284166005|ref|YP_003404284.1| - 5.7e-33 114.4 0.5 7.8e-33 114.0 0.3 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|284166005|ref|YP_003404284.1| - 1.7e-22 79.4 0.1 3e-22 78.7 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|284166005|ref|YP_003404284.1| - 1.8e-19 69.9 0.1 1.3e-15 57.4 0.0 2.7 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|284166005|ref|YP_003404284.1| - 9.4e-06 25.8 0.2 3.1e-05 24.1 0.1 2.0 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.1 gi|284166005|ref|YP_003404284.1| - 0.0005 19.0 0.0 0.0014 17.5 0.0 1.7 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_2 PF00890.19 gi|284166005|ref|YP_003404284.1| - 0.0026 16.7 1.1 0.0026 16.7 0.7 1.8 2 0 0 2 2 2 1 FAD binding domain DAO PF01266.19 gi|284166005|ref|YP_003404284.1| - 0.013 14.4 0.2 0.013 14.4 0.1 2.6 3 0 0 3 3 3 0 FAD dependent oxidoreductase 3HCDH_N PF02737.13 gi|284166005|ref|YP_003404284.1| - 0.034 13.7 0.1 0.98 9.0 0.0 2.4 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_8 PF13450.1 gi|284166005|ref|YP_003404284.1| - 0.035 14.1 0.8 0.44 10.6 0.1 2.5 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain XdhC_C PF13478.1 gi|284166005|ref|YP_003404284.1| - 0.038 14.3 0.0 0.08 13.2 0.0 1.6 1 0 0 1 1 1 0 XdhC Rossmann domain DrsE PF02635.10 gi|284166006|ref|YP_003404285.1| - 0.00016 21.7 0.1 0.00019 21.4 0.1 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family TAT_signal PF10518.4 gi|284166007|ref|YP_003404286.1| - 0.46 10.6 8.9 1 9.5 6.2 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Glyco_hydro_15 PF00723.16 gi|284166008|ref|YP_003404287.1| - 2.4e-52 178.0 0.0 1.2e-46 159.2 0.0 2.1 1 1 1 2 2 2 2 Glycosyl hydrolases family 15 IDEAL PF08858.5 gi|284166008|ref|YP_003404287.1| - 0.1 12.1 0.2 1.5 8.3 0.0 2.4 2 0 0 2 2 2 0 IDEAL domain TrmB PF01978.14 gi|284166009|ref|YP_003404288.1| - 3e-08 33.2 0.0 5.1e-08 32.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|284166009|ref|YP_003404288.1| - 1.5e-07 30.9 0.1 2.3e-07 30.3 0.1 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|284166009|ref|YP_003404288.1| - 1.5e-06 27.8 0.0 2.3e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|284166009|ref|YP_003404288.1| - 9.1e-06 25.2 0.2 1.7e-05 24.3 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|284166009|ref|YP_003404288.1| - 8.8e-05 22.2 0.3 0.00018 21.2 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|284166009|ref|YP_003404288.1| - 9.3e-05 21.7 0.0 0.00014 21.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|284166009|ref|YP_003404288.1| - 0.00027 20.4 0.0 0.00041 19.8 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|284166009|ref|YP_003404288.1| - 0.00093 18.7 0.0 0.0018 17.9 0.0 1.5 1 0 0 1 1 1 1 HTH domain Desulfoferrod_N PF06397.7 gi|284166009|ref|YP_003404288.1| - 0.0082 15.5 3.9 0.0082 15.5 2.7 2.2 2 1 0 2 2 2 1 Desulfoferrodoxin, N-terminal domain HTH_Crp_2 PF13545.1 gi|284166009|ref|YP_003404288.1| - 0.013 15.2 0.0 0.025 14.3 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain GntR PF00392.16 gi|284166009|ref|YP_003404288.1| - 0.027 13.8 0.2 0.059 12.8 0.2 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_27 PF13463.1 gi|284166009|ref|YP_003404288.1| - 0.029 14.6 0.0 0.054 13.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain TFIIE_alpha PF02002.12 gi|284166009|ref|YP_003404288.1| - 0.054 13.0 0.2 0.11 11.9 0.1 1.5 1 1 0 1 1 1 0 TFIIE alpha subunit Rrf2 PF02082.15 gi|284166009|ref|YP_003404288.1| - 0.096 12.8 0.0 0.17 12.0 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator Penicillinase_R PF03965.11 gi|284166009|ref|YP_003404288.1| - 0.12 12.5 0.0 0.23 11.5 0.0 1.6 1 0 0 1 1 1 0 Penicillinase repressor Pyr_redox_2 PF07992.9 gi|284166010|ref|YP_003404289.1| - 1.2e-34 120.0 5.6 3.6e-17 62.9 0.0 4.1 3 1 1 4 4 4 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|284166010|ref|YP_003404289.1| - 1.2e-19 70.5 1.9 1.3e-15 57.5 0.1 3.5 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|284166010|ref|YP_003404289.1| - 2e-09 37.4 0.0 4.5e-09 36.3 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NAD_binding_8 PF13450.1 gi|284166010|ref|YP_003404289.1| - 1.2e-08 34.8 6.5 0.001 19.0 0.1 3.1 3 0 0 3 3 3 2 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|284166010|ref|YP_003404289.1| - 4e-08 32.5 11.2 0.00068 18.6 0.2 4.3 3 1 1 4 4 4 4 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|284166010|ref|YP_003404289.1| - 4.2e-07 30.2 0.2 0.00091 19.3 0.0 2.9 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|284166010|ref|YP_003404289.1| - 1.6e-05 24.6 3.2 2.7e-05 23.9 0.1 2.4 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HI0933_like PF03486.9 gi|284166010|ref|YP_003404289.1| - 0.00018 20.1 0.2 0.23 9.9 0.0 3.2 3 0 0 3 3 3 1 HI0933-like protein NAD_binding_2 PF03446.10 gi|284166010|ref|YP_003404289.1| - 0.00092 19.0 0.3 0.0023 17.7 0.0 1.8 2 0 0 2 2 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|284166010|ref|YP_003404289.1| - 0.0016 17.8 0.0 0.004 16.5 0.0 1.7 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Thi4 PF01946.12 gi|284166010|ref|YP_003404289.1| - 0.0031 16.6 0.1 1 8.3 0.0 2.3 2 0 0 2 2 2 2 Thi4 family NAD_binding_9 PF13454.1 gi|284166010|ref|YP_003404289.1| - 0.0037 17.0 0.4 14 5.4 0.0 3.5 3 0 0 3 3 3 0 FAD-NAD(P)-binding Lycopene_cycl PF05834.7 gi|284166010|ref|YP_003404289.1| - 0.0044 15.9 0.2 0.29 9.9 0.0 2.5 2 0 0 2 2 2 1 Lycopene cyclase protein 2-Hacid_dh_C PF02826.14 gi|284166010|ref|YP_003404289.1| - 0.0049 16.0 0.0 0.013 14.6 0.0 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|284166010|ref|YP_003404289.1| - 0.0059 16.8 0.4 0.63 10.3 0.0 2.9 3 0 0 3 3 3 1 Putative NAD(P)-binding NAD_Gly3P_dh_N PF01210.18 gi|284166010|ref|YP_003404289.1| - 0.0085 15.8 0.1 0.044 13.5 0.0 2.1 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_10 PF13460.1 gi|284166010|ref|YP_003404289.1| - 0.02 14.9 1.8 0.034 14.1 0.5 2.1 2 1 0 2 2 2 0 NADH(P)-binding TrkA_N PF02254.13 gi|284166010|ref|YP_003404289.1| - 0.062 13.3 0.4 2.2 8.3 0.1 3.0 3 1 0 3 3 2 0 TrkA-N domain AlaDh_PNT_C PF01262.16 gi|284166010|ref|YP_003404289.1| - 0.082 12.4 2.3 4.6 6.7 0.1 3.2 3 0 0 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain GIDA PF01134.17 gi|284166010|ref|YP_003404289.1| - 2.2 7.0 9.1 0.15 10.9 0.1 2.6 3 0 0 3 3 3 0 Glucose inhibited division protein A adh_short PF00106.20 gi|284166011|ref|YP_003404290.1| - 8.5e-45 152.6 3.2 1.1e-44 152.3 2.2 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|284166011|ref|YP_003404290.1| - 4.9e-27 95.2 0.0 6e-27 94.9 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|284166011|ref|YP_003404290.1| - 4.1e-26 91.7 0.8 5.6e-26 91.3 0.5 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|284166011|ref|YP_003404290.1| - 0.0003 20.2 0.2 0.00047 19.6 0.1 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|284166011|ref|YP_003404290.1| - 0.0025 17.8 2.5 0.005 16.8 1.7 1.5 1 1 0 1 1 1 1 NADH(P)-binding THF_DHG_CYH_C PF02882.14 gi|284166011|ref|YP_003404290.1| - 0.026 13.5 0.0 0.058 12.4 0.0 1.5 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Eno-Rase_NADH_b PF12242.3 gi|284166011|ref|YP_003404290.1| - 0.039 13.7 0.0 0.28 11.0 0.0 2.2 2 0 0 2 2 2 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Polysacc_synt_2 PF02719.10 gi|284166011|ref|YP_003404290.1| - 0.059 12.2 0.0 0.082 11.7 0.0 1.1 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein TrmB PF01978.14 gi|284166013|ref|YP_003404292.1| - 1.2e-05 24.9 0.1 1.4e-05 24.7 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|284166013|ref|YP_003404292.1| - 0.064 12.9 0.1 0.082 12.6 0.1 1.2 1 0 0 1 1 1 0 MarR family HTH_5 PF01022.15 gi|284166013|ref|YP_003404292.1| - 0.071 12.7 1.2 0.11 12.1 0.8 1.5 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_36 PF13730.1 gi|284166013|ref|YP_003404292.1| - 0.1 12.7 0.0 0.13 12.3 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_20 PF12840.2 gi|284166013|ref|YP_003404292.1| - 0.11 12.2 0.3 0.14 11.9 0.2 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.5 gi|284166013|ref|YP_003404292.1| - 0.17 11.4 1.0 0.23 11.0 0.7 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain NikR_C PF08753.6 gi|284166014|ref|YP_003404293.1| - 1.9e-12 46.9 0.5 3.3e-12 46.1 0.1 1.5 2 0 0 2 2 2 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|284166014|ref|YP_003404293.1| - 0.0017 18.1 0.0 0.0034 17.1 0.0 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family DUF2191 PF09957.4 gi|284166014|ref|YP_003404293.1| - 0.0063 16.2 0.0 0.046 13.5 0.0 2.1 1 1 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2191) TerC PF03741.11 gi|284166015|ref|YP_003404294.1| - 2.1e-06 27.3 0.5 6.3e-05 22.5 0.3 2.1 1 1 0 1 1 1 1 Integral membrane protein TerC family NicO PF03824.11 gi|284166015|ref|YP_003404294.1| - 0.00014 21.2 15.5 0.00036 19.9 10.7 1.9 1 1 0 1 1 1 1 High-affinity nickel-transport protein DsbD PF02683.10 gi|284166015|ref|YP_003404294.1| - 0.0042 16.7 7.0 0.09 12.3 0.7 2.3 2 0 0 2 2 2 2 Cytochrome C biogenesis protein transmembrane region Met_10 PF02475.11 gi|284166016|ref|YP_003404295.1| - 5.2e-59 199.1 0.0 6.6e-59 198.8 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|284166016|ref|YP_003404295.1| - 8.3e-12 45.1 0.5 4.3e-11 42.8 0.1 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|284166016|ref|YP_003404295.1| - 2.1e-09 37.9 0.1 1.7e-08 34.9 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|284166016|ref|YP_003404295.1| - 1.9e-07 30.7 0.0 2.8e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_31 PF13847.1 gi|284166016|ref|YP_003404295.1| - 2.2e-07 30.5 0.0 3.1e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|284166016|ref|YP_003404295.1| - 3.6e-07 29.7 0.0 6e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain UPF0020 PF01170.13 gi|284166016|ref|YP_003404295.1| - 3e-06 26.9 0.0 5.7e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 PrmA PF06325.8 gi|284166016|ref|YP_003404295.1| - 3.2e-05 23.1 0.0 5.3e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.1 gi|284166016|ref|YP_003404295.1| - 4.4e-05 23.7 0.0 8.9e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|284166016|ref|YP_003404295.1| - 0.00015 21.1 0.0 0.00026 20.4 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_24 PF13578.1 gi|284166016|ref|YP_003404295.1| - 0.0016 19.2 0.0 0.0049 17.6 0.0 1.9 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|284166016|ref|YP_003404295.1| - 0.0017 18.7 0.0 0.0053 17.2 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|284166016|ref|YP_003404295.1| - 0.002 17.8 0.0 0.0044 16.7 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain TRM PF02005.11 gi|284166016|ref|YP_003404295.1| - 0.004 16.1 0.0 0.0059 15.5 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_12 PF08242.7 gi|284166016|ref|YP_003404295.1| - 0.033 14.6 0.0 0.13 12.7 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain DNA_methylase PF00145.12 gi|284166016|ref|YP_003404295.1| - 0.071 12.2 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase FmrO PF07091.6 gi|284166016|ref|YP_003404295.1| - 0.075 12.0 0.0 0.11 11.5 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) N6_N4_Mtase PF01555.13 gi|284166016|ref|YP_003404295.1| - 0.12 11.8 0.0 0.39 10.1 0.0 1.7 2 0 0 2 2 2 0 DNA methylase Rieske PF00355.21 gi|284166017|ref|YP_003404296.1| - 4.2e-08 32.6 0.1 5.9e-08 32.1 0.0 1.4 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain TP_methylase PF00590.15 gi|284166019|ref|YP_003404298.1| - 8.9e-21 74.5 1.2 1.1e-20 74.2 0.8 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Cyto_ox_2 PF02322.10 gi|284166020|ref|YP_003404299.1| - 0.0095 15.1 10.5 0.014 14.6 7.3 1.1 1 0 0 1 1 1 1 Cytochrome oxidase subunit II DUF1230 PF06799.6 gi|284166020|ref|YP_003404299.1| - 0.33 10.8 1.3 4.6 7.1 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1230) DUF2371 PF10177.4 gi|284166020|ref|YP_003404299.1| - 0.34 10.7 4.5 0.71 9.7 0.0 2.3 2 0 0 2 2 2 0 Uncharacterised conserved protein (DUF2371) DUF417 PF04224.7 gi|284166020|ref|YP_003404299.1| - 1.4 8.2 6.9 0.075 12.3 0.8 1.8 2 0 0 2 2 2 0 Protein of unknown function, DUF417 FA_desaturase PF00487.19 gi|284166020|ref|YP_003404299.1| - 1.8 7.9 4.5 0.25 10.7 0.4 1.5 2 0 0 2 2 2 0 Fatty acid desaturase DUF3040 PF11239.3 gi|284166020|ref|YP_003404299.1| - 6.7 6.8 10.1 0.94 9.5 2.5 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) Abhydrolase_6 PF12697.2 gi|284166021|ref|YP_003404300.1| - 4e-30 105.3 0.0 9.4e-30 104.1 0.0 1.6 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|284166021|ref|YP_003404300.1| - 1.8e-16 60.4 0.0 5.4e-16 58.8 0.0 1.8 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|284166021|ref|YP_003404300.1| - 6.7e-16 58.3 0.0 1.4e-15 57.2 0.0 1.6 1 1 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.3 gi|284166021|ref|YP_003404300.1| - 6e-06 26.0 0.0 1.2e-05 25.0 0.0 1.5 1 0 0 1 1 1 1 Putative lysophospholipase DUF1057 PF06342.7 gi|284166021|ref|YP_003404300.1| - 0.01 14.6 0.0 0.017 13.9 0.0 1.3 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF1057) Ndr PF03096.9 gi|284166021|ref|YP_003404300.1| - 0.029 12.8 0.0 0.043 12.2 0.0 1.2 1 0 0 1 1 1 0 Ndr family PGAP1 PF07819.8 gi|284166021|ref|YP_003404300.1| - 0.15 11.6 0.0 16 4.9 0.0 2.2 1 1 1 2 2 2 0 PGAP1-like protein PTS_IIB PF02302.12 gi|284166022|ref|YP_003404301.1| - 9.7e-20 70.8 0.7 9.7e-20 70.8 0.5 1.5 2 0 0 2 2 2 1 PTS system, Lactose/Cellobiose specific IIB subunit PEP-utilizers_C PF02896.13 gi|284166023|ref|YP_003404302.1| - 7.7e-103 343.3 0.0 1.1e-102 342.9 0.0 1.1 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|284166023|ref|YP_003404302.1| - 3e-26 90.7 0.3 6.1e-26 89.7 0.2 1.5 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain PEP-utilisers_N PF05524.8 gi|284166023|ref|YP_003404302.1| - 3e-26 91.6 1.5 3e-26 91.6 1.0 2.5 3 0 0 3 3 3 1 PEP-utilising enzyme, N-terminal Atrophin-1 PF03154.10 gi|284166023|ref|YP_003404302.1| - 1.3 7.0 3.1 1.9 6.5 2.1 1.1 1 0 0 1 1 1 0 Atrophin-1 family PTS-HPr PF00381.14 gi|284166024|ref|YP_003404303.1| - 2.8e-28 97.6 0.1 3.3e-28 97.4 0.0 1.0 1 0 0 1 1 1 1 PTS HPr component phosphorylation site PTS_EIIA_2 PF00359.17 gi|284166025|ref|YP_003404304.1| - 1.2e-34 119.1 0.0 1.4e-34 118.9 0.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PTS_EIIC PF02378.13 gi|284166026|ref|YP_003404305.1| - 2.4e-19 69.3 35.4 2.4e-19 69.3 24.5 1.5 2 0 0 2 2 2 1 Phosphotransferase system, EIIC PfkB PF00294.19 gi|284166027|ref|YP_003404306.1| - 2e-46 158.5 4.2 2.6e-46 158.1 2.9 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|284166027|ref|YP_003404306.1| - 0.00038 19.7 0.2 0.00062 19.0 0.2 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase DeoRC PF00455.17 gi|284166028|ref|YP_003404307.1| - 2.9e-48 163.5 0.1 3.8e-48 163.2 0.1 1.1 1 0 0 1 1 1 1 DeoR C terminal sensor domain HTH_DeoR PF08220.7 gi|284166028|ref|YP_003404307.1| - 1.9e-17 62.5 0.8 2.8e-17 61.9 0.1 1.7 2 0 0 2 2 1 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.7 gi|284166028|ref|YP_003404307.1| - 7.7e-09 35.0 0.0 1.6e-08 34.0 0.0 1.5 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|284166028|ref|YP_003404307.1| - 1.3e-07 31.1 0.9 1.4e-06 27.9 0.2 2.3 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.15 gi|284166028|ref|YP_003404307.1| - 1.8e-07 30.7 0.1 3.3e-07 29.8 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family GntR PF00392.16 gi|284166028|ref|YP_003404307.1| - 7.6e-07 28.4 0.0 1.5e-06 27.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.2 gi|284166028|ref|YP_003404307.1| - 1.2e-05 25.0 1.0 2.4e-05 24.0 0.2 1.9 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|284166028|ref|YP_003404307.1| - 3.4e-05 23.3 0.0 8.6e-05 22.0 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_IclR PF09339.5 gi|284166028|ref|YP_003404307.1| - 5.1e-05 22.7 0.1 0.00011 21.6 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|284166028|ref|YP_003404307.1| - 6.9e-05 22.4 0.4 0.0013 18.3 0.1 2.2 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|284166028|ref|YP_003404307.1| - 8.1e-05 22.2 0.0 0.00016 21.2 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|284166028|ref|YP_003404307.1| - 0.0016 17.7 0.3 0.021 14.2 0.1 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|284166028|ref|YP_003404307.1| - 0.0021 18.3 0.1 0.0045 17.2 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|284166028|ref|YP_003404307.1| - 0.0065 16.3 0.0 0.012 15.5 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_28 PF13518.1 gi|284166028|ref|YP_003404307.1| - 0.0082 16.1 0.0 0.016 15.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|284166028|ref|YP_003404307.1| - 0.011 15.8 0.0 0.027 14.5 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator Put_DNA-bind_N PF06971.8 gi|284166028|ref|YP_003404307.1| - 0.017 14.8 0.0 0.048 13.4 0.1 1.7 2 0 0 2 2 1 0 Putative DNA-binding protein N-terminus Sigma70_r4 PF04545.11 gi|284166028|ref|YP_003404307.1| - 0.018 14.3 0.2 0.04 13.2 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 RPA_C PF08784.6 gi|284166028|ref|YP_003404307.1| - 0.024 15.0 0.2 0.06 13.7 0.0 1.8 2 0 0 2 2 1 0 Replication protein A C terminal Sigma70_ECF PF07638.6 gi|284166028|ref|YP_003404307.1| - 0.03 14.0 0.0 0.049 13.2 0.0 1.3 1 0 0 1 1 1 0 ECF sigma factor HTH_38 PF13936.1 gi|284166028|ref|YP_003404307.1| - 0.037 13.5 0.0 0.086 12.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Mga PF05043.8 gi|284166028|ref|YP_003404307.1| - 0.061 13.6 0.0 0.12 12.6 0.0 1.4 1 0 0 1 1 1 0 Mga helix-turn-helix domain DUF742 PF05331.6 gi|284166028|ref|YP_003404307.1| - 0.068 12.7 0.5 0.18 11.4 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF742) Sigma70_r4_2 PF08281.7 gi|284166028|ref|YP_003404307.1| - 0.076 12.4 0.6 0.17 11.3 0.0 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_29 PF13551.1 gi|284166028|ref|YP_003404307.1| - 0.08 13.0 0.0 0.25 11.4 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn helix HTH_Tnp_1 PF01527.15 gi|284166028|ref|YP_003404307.1| - 0.096 12.6 2.1 0.11 12.4 0.2 2.0 2 0 0 2 2 2 0 Transposase TetR_N PF00440.18 gi|284166028|ref|YP_003404307.1| - 0.1 12.2 0.0 3.2 7.4 0.0 2.5 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family DsrD PF08679.6 gi|284166028|ref|YP_003404307.1| - 0.13 12.2 0.0 0.34 10.9 0.0 1.7 2 0 0 2 2 1 0 Dissimilatory sulfite reductase D (DsrD) Iso_dh PF00180.15 gi|284166029|ref|YP_003404308.1| - 8.9e-91 304.4 0.0 1.1e-90 304.1 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase EamA PF00892.15 gi|284166030|ref|YP_003404309.1| - 4e-36 123.8 27.0 3.1e-18 66.0 7.8 2.1 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.11 gi|284166030|ref|YP_003404309.1| - 0.00022 20.9 14.1 0.031 13.9 3.9 3.1 2 1 0 2 2 2 2 Triose-phosphate Transporter family EmrE PF13536.1 gi|284166030|ref|YP_003404309.1| - 0.00033 20.8 8.3 0.00033 20.8 5.7 3.8 2 2 2 4 4 4 1 Multidrug resistance efflux transporter RseC_MucC PF04246.7 gi|284166030|ref|YP_003404309.1| - 0.0043 16.6 3.0 0.0043 16.6 2.1 3.7 3 1 1 4 4 4 1 Positive regulator of sigma(E), RseC/MucC DUF2955 PF11168.3 gi|284166030|ref|YP_003404309.1| - 4.4 6.9 18.1 0.082 12.5 1.7 3.2 1 1 2 3 3 3 0 Protein of unknown function (DUF2955) SLAC1 PF03595.12 gi|284166030|ref|YP_003404309.1| - 4.6 5.7 23.4 1.6e+03 -2.6 16.2 2.3 1 1 0 1 1 1 0 Voltage-dependent anion channel Aconitase_C PF00694.14 gi|284166031|ref|YP_003404310.1| - 4.2e-21 75.4 0.0 6.3e-21 74.8 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase PF00330.15 gi|284166032|ref|YP_003404311.1| - 9.9e-148 492.4 0.0 1.1e-147 492.2 0.0 1.0 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.8 gi|284166032|ref|YP_003404311.1| - 0.022 13.3 0.0 0.036 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF521) IlvN PF07991.7 gi|284166034|ref|YP_003404313.1| - 2.8e-70 234.9 0.1 4e-70 234.4 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain IlvC PF01450.14 gi|284166034|ref|YP_003404313.1| - 3.7e-54 182.5 0.2 5.2e-54 182.1 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_2 PF03446.10 gi|284166034|ref|YP_003404313.1| - 6.7e-07 29.2 0.0 1.3e-06 28.3 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|284166034|ref|YP_003404313.1| - 1.2e-06 28.8 0.1 2.4e-06 27.8 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|284166034|ref|YP_003404313.1| - 7.7e-06 25.1 0.0 1.4e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|284166034|ref|YP_003404313.1| - 0.0051 17.3 0.1 0.011 16.2 0.1 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold ApbA PF02558.11 gi|284166034|ref|YP_003404313.1| - 0.0077 15.6 0.1 0.015 14.7 0.1 1.6 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|284166034|ref|YP_003404313.1| - 0.11 12.2 0.2 0.35 10.5 0.0 1.9 2 1 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Mur_ligase PF01225.20 gi|284166034|ref|YP_003404313.1| - 0.12 12.4 0.2 0.3 11.1 0.1 1.6 1 0 0 1 1 1 0 Mur ligase family, catalytic domain ALS_ss_C PF10369.4 gi|284166035|ref|YP_003404314.1| - 4e-22 77.7 0.1 7.5e-22 76.8 0.1 1.5 1 0 0 1 1 1 1 Small subunit of acetolactate synthase ACT_5 PF13710.1 gi|284166035|ref|YP_003404314.1| - 7.6e-17 60.8 0.0 3.5e-16 58.7 0.0 2.0 2 0 0 2 2 2 1 ACT domain ACT PF01842.20 gi|284166035|ref|YP_003404314.1| - 4.8e-13 48.2 0.1 1.2e-12 47.0 0.0 1.7 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|284166035|ref|YP_003404314.1| - 0.0018 18.5 0.0 0.0037 17.5 0.0 1.5 1 0 0 1 1 1 1 ACT domain TPP_enzyme_N PF02776.13 gi|284166036|ref|YP_003404315.1| - 1.1e-52 177.9 0.2 4.3e-52 176.0 0.2 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|284166036|ref|YP_003404315.1| - 1.6e-50 170.6 1.8 2.9e-50 169.8 0.0 2.3 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|284166036|ref|YP_003404315.1| - 2.9e-41 140.4 0.8 1.2e-40 138.4 0.0 2.4 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, central domain CO_dh PF02552.11 gi|284166036|ref|YP_003404315.1| - 0.011 15.3 0.0 0.019 14.5 0.0 1.3 1 0 0 1 1 1 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit HMGL-like PF00682.14 gi|284166037|ref|YP_003404316.1| - 1.5e-69 234.2 4.9 2.1e-69 233.8 3.4 1.2 1 0 0 1 1 1 1 HMGL-like AP_endonuc_2 PF01261.19 gi|284166037|ref|YP_003404316.1| - 0.023 13.9 0.2 0.06 12.6 0.0 1.8 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel Asp_protease PF09668.5 gi|284166037|ref|YP_003404316.1| - 0.052 13.1 0.1 0.1 12.1 0.0 1.4 1 0 0 1 1 1 0 Aspartyl protease Ferritin PF00210.19 gi|284166038|ref|YP_003404317.1| - 5.9e-24 84.4 1.4 6.6e-24 84.2 1.0 1.0 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.12 gi|284166038|ref|YP_003404317.1| - 1e-10 42.0 0.6 1.2e-10 41.8 0.4 1.0 1 0 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.5 gi|284166038|ref|YP_003404317.1| - 0.0003 20.9 2.2 0.12 12.6 0.1 2.3 2 1 0 2 2 2 2 Domain of unknown function (DUF2383) DUF892 PF05974.7 gi|284166038|ref|YP_003404317.1| - 0.00046 20.0 3.8 0.0016 18.2 2.6 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF892) Ferritin_2 PF13668.1 gi|284166038|ref|YP_003404317.1| - 0.00047 20.1 0.4 0.00057 19.8 0.2 1.2 1 0 0 1 1 1 1 Ferritin-like domain DUF4439 PF14530.1 gi|284166038|ref|YP_003404317.1| - 0.00054 20.4 0.1 0.00069 20.0 0.1 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4439) Ferritin-like PF12902.2 gi|284166038|ref|YP_003404317.1| - 0.00098 18.7 0.3 0.0011 18.5 0.2 1.1 1 0 0 1 1 1 1 Ferritin-like GatB_Yqey PF02637.13 gi|284166038|ref|YP_003404317.1| - 0.018 14.7 1.2 0.052 13.2 0.9 1.8 1 1 0 1 1 1 0 GatB domain DUF892 PF05974.7 gi|284166040|ref|YP_003404319.1| - 3.1e-41 140.8 7.3 3.6e-41 140.6 5.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF892) Ferritin PF00210.19 gi|284166040|ref|YP_003404319.1| - 0.024 14.3 9.5 0.069 12.8 6.6 1.8 1 1 0 1 1 1 0 Ferritin-like domain TBPIP PF07106.8 gi|284166040|ref|YP_003404319.1| - 0.05 13.1 1.4 0.11 12.0 0.2 1.8 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) SOG2 PF10428.4 gi|284166040|ref|YP_003404319.1| - 0.054 12.1 0.1 0.075 11.6 0.1 1.2 1 0 0 1 1 1 0 RAM signalling pathway protein TipAS PF07739.8 gi|284166040|ref|YP_003404319.1| - 0.054 13.8 1.8 0.095 13.0 1.3 1.5 1 0 0 1 1 1 0 TipAS antibiotic-recognition domain Toxin_52 PF15605.1 gi|284166040|ref|YP_003404319.1| - 0.06 13.2 0.2 0.33 10.8 0.1 2.0 2 0 0 2 2 2 0 Putative toxin 52 DUF4546 PF15079.1 gi|284166040|ref|YP_003404319.1| - 0.086 11.9 1.7 0.065 12.3 0.4 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4546) FlgN PF05130.7 gi|284166040|ref|YP_003404319.1| - 0.11 12.8 5.8 2.4 8.4 0.9 2.1 1 1 0 2 2 2 0 FlgN protein DUF904 PF06005.7 gi|284166040|ref|YP_003404319.1| - 0.17 12.1 2.8 0.25 11.6 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF904) DUF2524 PF10732.4 gi|284166040|ref|YP_003404319.1| - 0.27 11.3 8.8 1.4 9.0 0.9 2.6 2 2 0 2 2 2 0 Protein of unknown function (DUF2524) Hemerythrin PF01814.18 gi|284166040|ref|YP_003404319.1| - 1.3 9.2 8.2 0.52 10.4 2.9 2.0 1 1 1 2 2 2 0 Hemerythrin HHE cation binding domain Vir_act_alpha_C PF10400.4 gi|284166040|ref|YP_003404319.1| - 1.7 9.1 5.0 5.4 7.4 0.1 2.7 3 0 0 3 3 3 0 Virulence activator alpha C-term DUF4404 PF14357.1 gi|284166040|ref|YP_003404319.1| - 6.3 7.2 9.9 4.5 7.7 3.6 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4404) HATPase_c PF02518.21 gi|284166041|ref|YP_003404320.1| - 7.1e-28 96.5 0.0 1.8e-27 95.2 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|284166041|ref|YP_003404320.1| - 5.4e-14 51.9 0.3 5.4e-14 51.9 0.2 2.3 2 1 1 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|284166041|ref|YP_003404320.1| - 5.3e-08 32.8 0.6 1.2e-07 31.6 0.4 1.6 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|284166041|ref|YP_003404320.1| - 2.1e-07 31.2 0.1 4.9e-07 30.0 0.0 1.6 1 0 0 1 1 1 1 PAS domain HATPase_c_5 PF14501.1 gi|284166041|ref|YP_003404320.1| - 0.00048 19.7 0.0 0.00098 18.7 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.1 gi|284166041|ref|YP_003404320.1| - 0.0019 17.9 0.5 0.011 15.5 0.0 2.3 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain DUF3186 PF11382.3 gi|284166041|ref|YP_003404320.1| - 0.021 13.9 2.6 0.36 9.9 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3186) Streptin-Immun PF11083.3 gi|284166041|ref|YP_003404320.1| - 0.024 14.6 3.4 1.2 9.2 0.1 3.4 3 0 0 3 3 3 0 Lantibiotic streptin immunity protein DivIC PF04977.10 gi|284166041|ref|YP_003404320.1| - 0.041 13.3 1.9 5.6 6.5 0.2 2.5 2 0 0 2 2 2 0 Septum formation initiator DUF2205 PF10224.4 gi|284166041|ref|YP_003404320.1| - 0.06 12.9 0.2 0.72 9.4 0.0 2.6 3 0 0 3 3 3 0 Predicted coiled-coil protein (DUF2205) HATPase_c_3 PF13589.1 gi|284166041|ref|YP_003404320.1| - 0.067 12.8 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FimP PF09766.4 gi|284166041|ref|YP_003404320.1| - 0.097 11.7 1.6 0.21 10.6 0.1 1.9 2 0 0 2 2 2 0 Fms-interacting protein HrpB7 PF09486.5 gi|284166041|ref|YP_003404320.1| - 0.1 12.5 4.6 0.2 11.6 0.9 2.3 2 0 0 2 2 2 0 Bacterial type III secretion protein (HrpB7) BLOC1_2 PF10046.4 gi|284166041|ref|YP_003404320.1| - 0.24 11.5 2.1 10 6.3 0.3 3.2 3 1 0 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 IncA PF04156.9 gi|284166041|ref|YP_003404320.1| - 0.28 10.7 6.2 0.88 9.1 0.3 2.5 3 0 0 3 3 2 0 IncA protein ATG16 PF08614.6 gi|284166041|ref|YP_003404320.1| - 0.29 10.9 5.4 0.14 11.9 0.9 2.3 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) bZIP_1 PF00170.16 gi|284166041|ref|YP_003404320.1| - 0.35 10.8 3.3 3.3 7.7 0.2 2.4 2 0 0 2 2 2 0 bZIP transcription factor Nsp1_C PF05064.8 gi|284166041|ref|YP_003404320.1| - 0.36 10.4 4.6 0.29 10.8 0.3 2.7 2 1 2 4 4 3 0 Nsp1-like C-terminal region Snapin_Pallidin PF14712.1 gi|284166041|ref|YP_003404320.1| - 0.67 10.3 3.0 3.8 7.8 0.2 2.6 2 0 0 2 2 2 0 Snapin/Pallidin DUF904 PF06005.7 gi|284166041|ref|YP_003404320.1| - 0.92 9.8 4.6 1.6 9.0 0.8 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF904) bZIP_2 PF07716.10 gi|284166041|ref|YP_003404320.1| - 6.8 6.6 7.6 2.6 7.9 0.9 2.3 2 0 0 2 2 2 0 Basic region leucine zipper Glyoxalase_2 PF12681.2 gi|284166042|ref|YP_003404321.1| - 8.9e-20 71.3 1.9 6.2e-09 36.4 0.1 2.1 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase PF00903.20 gi|284166042|ref|YP_003404321.1| - 1.9e-08 34.3 0.0 0.0006 19.7 0.0 2.9 2 1 1 3 3 3 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RHH_1 PF01402.16 gi|284166045|ref|YP_003404324.1| - 0.0002 21.0 0.2 0.00082 19.1 0.0 1.8 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family GvpK PF05121.7 gi|284166045|ref|YP_003404324.1| - 0.023 14.5 0.1 0.032 14.0 0.1 1.2 1 0 0 1 1 1 0 Gas vesicle protein K SHOCT PF09851.4 gi|284166045|ref|YP_003404324.1| - 0.044 13.2 2.6 0.07 12.6 1.8 1.4 1 0 0 1 1 1 0 Short C-terminal domain PG_binding_2 PF08823.6 gi|284166045|ref|YP_003404324.1| - 0.069 13.2 0.1 0.16 12.0 0.1 1.6 2 0 0 2 2 2 0 Putative peptidoglycan binding domain Glycos_transf_2 PF00535.21 gi|284166047|ref|YP_003404326.1| - 3.3e-17 62.6 0.1 4.6e-17 62.2 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|284166047|ref|YP_003404326.1| - 3e-10 40.3 0.1 4.5e-10 39.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|284166047|ref|YP_003404326.1| - 0.023 15.0 0.0 0.043 14.1 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 UDPG_MGDP_dh_N PF03721.9 gi|284166048|ref|YP_003404327.1| - 3.4e-50 169.9 0.1 9.6e-50 168.5 0.0 1.7 1 1 1 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|284166048|ref|YP_003404327.1| - 9e-32 109.1 0.0 1.6e-31 108.3 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|284166048|ref|YP_003404327.1| - 7.4e-28 96.8 0.0 2.5e-27 95.1 0.0 1.9 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_Gly3P_dh_N PF01210.18 gi|284166048|ref|YP_003404327.1| - 5.3e-07 29.5 0.1 3e-06 27.0 0.0 2.2 3 0 0 3 3 3 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|284166048|ref|YP_003404327.1| - 3e-06 26.7 0.0 5.8e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.13 gi|284166048|ref|YP_003404327.1| - 1.5e-05 24.7 0.0 3.4e-05 23.5 0.0 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|284166048|ref|YP_003404327.1| - 0.00025 21.3 0.9 0.0039 17.4 0.0 3.0 4 0 0 4 4 3 1 Semialdehyde dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|284166048|ref|YP_003404327.1| - 0.00031 21.0 0.7 0.31 11.5 0.0 4.0 3 1 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent Pyr_redox PF00070.22 gi|284166048|ref|YP_003404327.1| - 0.001 19.4 0.2 0.0061 16.9 0.1 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_10 PF13460.1 gi|284166048|ref|YP_003404327.1| - 0.0021 18.0 2.2 1.5 8.8 0.1 3.3 2 1 0 2 2 2 1 NADH(P)-binding TrkA_N PF02254.13 gi|284166048|ref|YP_003404327.1| - 0.0041 17.0 1.4 0.092 12.7 0.1 2.7 2 0 0 2 2 2 1 TrkA-N domain NAD_binding_8 PF13450.1 gi|284166048|ref|YP_003404327.1| - 0.005 16.8 0.1 0.016 15.1 0.0 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain B12-binding PF02310.14 gi|284166048|ref|YP_003404327.1| - 0.0072 16.1 0.5 1.1 9.0 0.0 3.3 3 1 0 3 3 2 1 B12 binding domain 2-Hacid_dh_C PF02826.14 gi|284166048|ref|YP_003404327.1| - 0.0099 15.0 0.1 1.9 7.6 0.0 2.4 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DUF3320 PF11784.3 gi|284166048|ref|YP_003404327.1| - 0.012 15.1 0.9 0.048 13.1 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3320) DAO PF01266.19 gi|284166048|ref|YP_003404327.1| - 0.025 13.4 5.6 0.066 12.1 3.8 2.0 1 1 0 1 1 1 0 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.16 gi|284166048|ref|YP_003404327.1| - 0.056 12.9 0.1 0.15 11.6 0.0 1.7 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.14 gi|284166048|ref|YP_003404327.1| - 0.064 12.2 0.1 0.14 11.1 0.0 1.7 2 0 0 2 2 2 0 FAD binding domain Pyr_redox_2 PF07992.9 gi|284166048|ref|YP_003404327.1| - 0.11 12.3 0.0 0.38 10.6 0.0 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_2 PF03446.10 gi|284166048|ref|YP_003404327.1| - 0.11 12.3 0.0 1.3 8.8 0.0 2.5 2 1 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase ThiF PF00899.16 gi|284166048|ref|YP_003404327.1| - 0.13 12.0 0.2 0.42 10.4 0.0 2.0 2 0 0 2 2 2 0 ThiF family Abhydrolase_3 PF07859.8 gi|284166049|ref|YP_003404328.1| - 2.2e-77 259.3 0.0 3.2e-77 258.8 0.0 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold COesterase PF00135.23 gi|284166049|ref|YP_003404328.1| - 8.4e-16 57.7 0.0 1.7e-15 56.7 0.0 1.4 1 1 0 1 1 1 1 Carboxylesterase family Abhydrolase_5 PF12695.2 gi|284166049|ref|YP_003404328.1| - 3.6e-07 30.0 0.0 6.8e-07 29.1 0.0 1.6 1 1 1 2 2 2 1 Alpha/beta hydrolase family DLH PF01738.13 gi|284166049|ref|YP_003404328.1| - 0.018 14.3 0.0 5.6 6.1 0.0 2.3 2 0 0 2 2 2 0 Dienelactone hydrolase family Peptidase_S9 PF00326.16 gi|284166049|ref|YP_003404328.1| - 0.019 14.1 0.0 0.052 12.7 0.0 1.8 2 0 0 2 2 2 0 Prolyl oligopeptidase family DUF2424 PF10340.4 gi|284166049|ref|YP_003404328.1| - 0.22 10.1 0.0 13 4.2 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2424) Pribosyltran PF00156.22 gi|284166050|ref|YP_003404329.1| - 8.8e-16 57.7 3.8 3e-15 56.0 2.7 1.8 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|284166050|ref|YP_003404329.1| - 0.00069 18.8 0.0 0.00082 18.6 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|284166050|ref|YP_003404329.1| - 0.0041 16.4 0.8 0.0053 16.0 0.4 1.4 1 1 0 1 1 1 1 Phosphoribosyl transferase CBS PF00571.23 gi|284166050|ref|YP_003404329.1| - 0.019 14.7 0.2 0.049 13.4 0.2 1.7 1 1 0 1 1 1 0 CBS domain UBA PF00627.26 gi|284166050|ref|YP_003404329.1| - 0.035 13.9 0.2 0.32 10.8 0.0 2.4 2 0 0 2 2 2 0 UBA/TS-N domain Aldolase_II PF00596.16 gi|284166051|ref|YP_003404330.1| - 4.4e-42 143.7 1.2 5.4e-42 143.4 0.8 1.1 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain HAD_2 PF13419.1 gi|284166052|ref|YP_003404331.1| - 1e-26 94.2 0.0 1.2e-26 93.9 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|284166052|ref|YP_003404331.1| - 1e-11 44.3 0.0 2e-11 43.4 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|284166052|ref|YP_003404331.1| - 1.5e-11 45.1 0.0 2.3e-11 44.5 0.0 1.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|284166052|ref|YP_003404331.1| - 0.00056 19.7 0.0 0.0017 18.2 0.0 1.7 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|284166052|ref|YP_003404331.1| - 0.00073 19.7 0.0 0.0012 19.0 0.0 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Acid_PPase PF12689.2 gi|284166052|ref|YP_003404331.1| - 0.0041 16.7 0.0 0.38 10.3 0.0 2.2 2 0 0 2 2 2 2 Acid Phosphatase DUF1469 PF07332.6 gi|284166053|ref|YP_003404332.1| - 0.013 15.2 3.1 0.015 14.9 2.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) NfeD PF01957.13 gi|284166053|ref|YP_003404332.1| - 0.12 12.4 3.9 0.15 12.1 2.7 1.1 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding Tad PF13400.1 gi|284166053|ref|YP_003404332.1| - 0.27 11.3 0.3 0.27 11.3 0.2 2.2 2 0 0 2 2 2 0 Putative Flp pilus-assembly TadE/G-like IncA PF04156.9 gi|284166053|ref|YP_003404332.1| - 3.5 7.1 7.4 4.4 6.8 4.9 1.3 1 1 0 1 1 1 0 IncA protein tRNA-synt_2b PF00587.20 gi|284166054|ref|YP_003404333.1| - 6.5e-39 133.2 0.0 1.1e-38 132.4 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|284166054|ref|YP_003404333.1| - 7.3e-16 57.9 2.0 1.3e-15 57.1 0.3 2.3 3 0 0 3 3 3 1 Anticodon binding domain tRNA_SAD PF07973.9 gi|284166054|ref|YP_003404333.1| - 7.5e-13 48.1 0.0 1.4e-12 47.2 0.0 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain TGS PF02824.16 gi|284166054|ref|YP_003404333.1| - 2.6e-11 43.1 0.1 6.8e-11 41.8 0.0 1.8 1 0 0 1 1 1 1 TGS domain PEMT PF04191.8 gi|284166055|ref|YP_003404334.1| - 2.9e-16 59.5 0.3 2.9e-16 59.5 0.2 2.3 2 0 0 2 2 2 1 Phospholipid methyltransferase DUF1295 PF06966.7 gi|284166055|ref|YP_003404334.1| - 5.6e-05 22.5 0.5 7.5e-05 22.1 0.4 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1295) ICMT PF04140.9 gi|284166055|ref|YP_003404334.1| - 0.00012 22.2 0.1 0.00025 21.1 0.0 1.5 1 0 0 1 1 1 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family ERG4_ERG24 PF01222.12 gi|284166055|ref|YP_003404334.1| - 0.00019 20.0 0.1 0.00032 19.3 0.1 1.2 1 0 0 1 1 1 1 Ergosterol biosynthesis ERG4/ERG24 family Steroid_dh PF02544.11 gi|284166055|ref|YP_003404334.1| - 0.00055 19.7 0.1 0.00078 19.2 0.1 1.3 1 0 0 1 1 1 1 3-oxo-5-alpha-steroid 4-dehydrogenase Got1 PF04178.7 gi|284166055|ref|YP_003404334.1| - 2.3 8.3 6.1 1.1 9.3 0.1 2.7 2 1 0 2 2 2 0 Got1/Sft2-like family HTH_10 PF04967.7 gi|284166056|ref|YP_003404335.1| - 3.9e-14 51.9 0.1 6e-14 51.3 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain VWA_3 PF13768.1 gi|284166056|ref|YP_003404335.1| - 0.0069 16.0 0.0 0.013 15.1 0.0 1.5 1 1 0 1 1 1 1 von Willebrand factor type A domain Pribosyltran PF00156.22 gi|284166057|ref|YP_003404336.1| - 1.4e-13 50.6 0.2 2e-13 50.1 0.2 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_3 PF01381.17 gi|284166057|ref|YP_003404336.1| - 0.004 16.9 0.0 0.0091 15.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix PRTase_3 PF15610.1 gi|284166057|ref|YP_003404336.1| - 0.093 11.6 0.0 0.13 11.1 0.0 1.2 1 0 0 1 1 1 0 PRTase ComF-like HTH_IclR PF09339.5 gi|284166057|ref|YP_003404336.1| - 0.099 12.2 0.0 0.22 11.1 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain B12-binding PF02310.14 gi|284166058|ref|YP_003404337.1| - 1.9e-15 56.7 1.5 5.3e-15 55.3 0.9 1.7 1 1 0 1 1 1 1 B12 binding domain Peripla_BP_6 PF13458.1 gi|284166058|ref|YP_003404337.1| - 0.0015 17.9 0.8 0.0028 17.0 0.6 1.5 1 1 0 1 1 1 1 Periplasmic binding protein Glyco_transf_28 PF03033.15 gi|284166058|ref|YP_003404337.1| - 0.048 13.4 0.6 0.064 13.0 0.4 1.5 1 1 0 1 1 1 0 Glycosyltransferase family 28 N-terminal domain ADH_zinc_N PF00107.21 gi|284166058|ref|YP_003404337.1| - 0.075 12.5 0.2 0.22 11.1 0.0 1.8 2 1 0 2 2 2 0 Zinc-binding dehydrogenase Usp PF00582.21 gi|284166059|ref|YP_003404338.1| - 1.1e-32 113.1 1.4 1.3e-32 112.9 1.0 1.1 1 0 0 1 1 1 1 Universal stress protein family E1_dh PF00676.15 gi|284166060|ref|YP_003404339.1| - 2e-81 272.9 0.0 2.8e-81 272.5 0.0 1.2 1 0 0 1 1 1 1 Dehydrogenase E1 component Transket_pyr PF02779.19 gi|284166060|ref|YP_003404339.1| - 3.8e-44 150.2 0.0 8.1e-44 149.2 0.0 1.6 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.15 gi|284166060|ref|YP_003404339.1| - 1.5e-34 118.6 1.3 2.1e-34 118.1 0.1 1.9 2 0 0 2 2 2 1 Transketolase, C-terminal domain Transketolase_N PF00456.16 gi|284166060|ref|YP_003404339.1| - 6.5e-07 28.4 0.1 1.3e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain DXP_synthase_N PF13292.1 gi|284166060|ref|YP_003404339.1| - 5.1e-06 25.6 0.0 8.7e-06 24.8 0.0 1.3 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase Sorb PF02208.11 gi|284166060|ref|YP_003404339.1| - 0.13 11.6 0.1 0.43 9.9 0.1 1.9 1 0 0 1 1 1 0 Sorbin homologous domain NAD_binding_2 PF03446.10 gi|284166060|ref|YP_003404339.1| - 0.16 11.8 2.3 1.8 8.3 0.1 3.1 3 1 1 4 4 4 0 NAD binding domain of 6-phosphogluconate dehydrogenase Peptidase_S8 PF00082.17 gi|284166061|ref|YP_003404340.1| - 1.5e-34 119.4 1.0 1.5e-34 119.4 0.7 1.6 2 1 0 2 2 2 1 Subtilase family Ribosomal_L15e PF00827.12 gi|284166062|ref|YP_003404341.1| - 1.3e-82 276.0 4.1 1.5e-82 275.7 2.9 1.0 1 0 0 1 1 1 1 Ribosomal L15 DUF2938 PF11158.3 gi|284166063|ref|YP_003404342.1| - 0.35 10.1 7.4 0.87 8.9 5.1 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF2938) Abi PF02517.11 gi|284166063|ref|YP_003404342.1| - 3.4 7.8 9.8 87 3.3 6.6 2.5 1 1 0 1 1 1 0 CAAX protease self-immunity DUF1576 PF07613.6 gi|284166063|ref|YP_003404342.1| - 3.5 7.0 15.3 0.24 10.9 0.8 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF1576) adh_short PF00106.20 gi|284166064|ref|YP_003404343.1| - 1.8e-35 122.3 4.3 2.4e-35 121.8 3.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|284166064|ref|YP_003404343.1| - 3.6e-28 98.9 0.1 4.2e-28 98.7 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|284166064|ref|YP_003404343.1| - 2.1e-14 53.6 1.3 2.8e-14 53.1 0.9 1.2 1 0 0 1 1 1 1 KR domain Methyltransf_25 PF13649.1 gi|284166064|ref|YP_003404343.1| - 0.00046 20.5 0.0 0.00078 19.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Epimerase PF01370.16 gi|284166064|ref|YP_003404343.1| - 0.00067 19.1 0.5 0.0027 17.1 0.4 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|284166064|ref|YP_003404343.1| - 0.012 15.6 1.7 0.029 14.3 0.9 1.8 2 0 0 2 2 2 0 NADH(P)-binding THF_DHG_CYH_C PF02882.14 gi|284166064|ref|YP_003404343.1| - 0.019 14.0 0.4 2.1 7.4 0.1 2.5 2 1 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AdoHcyase_NAD PF00670.16 gi|284166064|ref|YP_003404343.1| - 0.032 14.0 2.8 0.12 12.2 2.0 1.9 1 1 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 3HCDH_N PF02737.13 gi|284166064|ref|YP_003404343.1| - 0.045 13.3 0.2 0.093 12.3 0.2 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|284166064|ref|YP_003404343.1| - 0.069 13.4 0.1 0.15 12.2 0.1 1.6 2 0 0 2 2 2 0 Putative NAD(P)-binding 3Beta_HSD PF01073.14 gi|284166064|ref|YP_003404343.1| - 0.084 11.5 0.6 0.14 10.7 0.4 1.4 1 1 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family Saccharop_dh PF03435.13 gi|284166064|ref|YP_003404343.1| - 0.094 11.6 0.3 0.13 11.2 0.2 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase 2-Hacid_dh_C PF02826.14 gi|284166064|ref|YP_003404343.1| - 0.32 10.1 1.9 0.29 10.2 0.1 1.8 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain p450 PF00067.17 gi|284166065|ref|YP_003404344.1| - 1.4e-33 116.1 0.0 9.4e-28 96.9 0.0 2.7 3 0 0 3 3 3 2 Cytochrome P450 Acyl-CoA_dh_N PF02771.11 gi|284166065|ref|YP_003404344.1| - 0.024 15.1 0.4 0.066 13.7 0.0 1.9 2 0 0 2 2 2 0 Acyl-CoA dehydrogenase, N-terminal domain TetR_N PF00440.18 gi|284166066|ref|YP_003404345.1| - 3.2e-14 52.2 0.0 6.9e-14 51.2 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_6 PF13977.1 gi|284166066|ref|YP_003404345.1| - 4.3e-10 39.6 1.2 4.3e-10 39.6 0.8 1.7 2 0 0 2 2 2 1 Bacterial transcriptional repressor TetR_C_7 PF14246.1 gi|284166066|ref|YP_003404345.1| - 0.53 10.5 2.1 1.1 9.5 0.0 2.5 3 1 1 4 4 4 0 AefR-like transcriptional repressor, C-terminal region RIO1 PF01163.17 gi|284166067|ref|YP_003404346.1| - 2.4e-44 150.9 0.4 3.2e-44 150.5 0.3 1.1 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.6 gi|284166067|ref|YP_003404346.1| - 1.3e-26 92.4 0.1 2.6e-26 91.4 0.0 1.5 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.18 gi|284166067|ref|YP_003404346.1| - 1.1e-05 25.3 2.1 0.048 13.3 0.7 3.1 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.20 gi|284166067|ref|YP_003404346.1| - 4.5e-05 22.7 0.0 7e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain Sulfolobus_pRN PF05584.6 gi|284166067|ref|YP_003404346.1| - 0.036 14.0 0.1 0.077 12.9 0.1 1.5 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein WaaY PF06176.6 gi|284166067|ref|YP_003404346.1| - 0.077 12.2 0.0 0.13 11.4 0.0 1.3 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) Kdo PF06293.9 gi|284166067|ref|YP_003404346.1| - 0.089 11.8 0.1 0.3 10.1 0.0 1.7 1 1 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family ABC_tran PF00005.22 gi|284166068|ref|YP_003404347.1| - 7.9e-31 107.1 0.0 1.1e-30 106.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284166068|ref|YP_003404347.1| - 9.7e-11 42.1 0.0 5.8e-05 23.1 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|284166068|ref|YP_003404347.1| - 5.1e-07 29.8 0.3 3.1e-06 27.2 0.2 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|284166068|ref|YP_003404347.1| - 0.00015 22.5 1.5 0.0038 18.0 0.0 2.6 3 0 0 3 3 2 1 AAA domain AAA_22 PF13401.1 gi|284166068|ref|YP_003404347.1| - 0.00023 21.2 0.0 0.00093 19.3 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|284166068|ref|YP_003404347.1| - 0.00026 21.2 0.1 0.0026 17.9 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|284166068|ref|YP_003404347.1| - 0.0018 17.7 0.0 0.027 13.9 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain AAA_25 PF13481.1 gi|284166068|ref|YP_003404347.1| - 0.002 17.5 0.2 0.01 15.2 0.0 2.1 2 1 1 3 3 3 1 AAA domain AAA_28 PF13521.1 gi|284166068|ref|YP_003404347.1| - 0.0029 17.6 0.1 0.052 13.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|284166068|ref|YP_003404347.1| - 0.0052 16.4 0.0 0.0097 15.5 0.0 1.4 1 0 0 1 1 1 1 NACHT domain DUF258 PF03193.11 gi|284166068|ref|YP_003404347.1| - 0.0055 15.9 0.0 0.0092 15.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|284166068|ref|YP_003404347.1| - 0.0069 16.1 0.1 0.028 14.1 0.1 2.1 1 0 0 1 1 1 1 Part of AAA domain AAA_18 PF13238.1 gi|284166068|ref|YP_003404347.1| - 0.017 15.4 0.0 0.044 14.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|284166068|ref|YP_003404347.1| - 0.018 14.1 0.0 0.28 10.1 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain Arch_ATPase PF01637.13 gi|284166068|ref|YP_003404347.1| - 0.023 14.4 0.0 0.058 13.0 0.0 1.6 2 0 0 2 2 2 0 Archaeal ATPase ATP-synt_ab PF00006.20 gi|284166068|ref|YP_003404347.1| - 0.031 13.7 0.2 0.058 12.8 0.1 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Miro PF08477.8 gi|284166068|ref|YP_003404347.1| - 0.034 14.6 0.0 0.09 13.2 0.0 1.7 1 0 0 1 1 1 0 Miro-like protein Rad17 PF03215.10 gi|284166068|ref|YP_003404347.1| - 0.036 12.7 0.0 0.05 12.2 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_30 PF13604.1 gi|284166068|ref|YP_003404347.1| - 0.046 13.3 0.0 0.16 11.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|284166068|ref|YP_003404347.1| - 0.05 13.3 0.1 0.11 12.2 0.1 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) SMC_N PF02463.14 gi|284166068|ref|YP_003404347.1| - 0.056 12.6 0.0 2.2 7.4 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|284166068|ref|YP_003404347.1| - 0.065 13.5 0.0 0.092 13.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|284166068|ref|YP_003404347.1| - 0.066 12.7 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|284166068|ref|YP_003404347.1| - 0.082 12.8 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|284166068|ref|YP_003404347.1| - 0.089 12.9 0.1 0.39 10.9 0.0 1.9 2 0 0 2 2 2 0 RNA helicase MobB PF03205.9 gi|284166068|ref|YP_003404347.1| - 0.089 12.4 0.0 0.19 11.4 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_24 PF13479.1 gi|284166068|ref|YP_003404347.1| - 0.1 12.1 0.1 0.71 9.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|284166068|ref|YP_003404347.1| - 0.11 12.3 0.1 0.25 11.2 0.0 1.6 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.1 gi|284166068|ref|YP_003404347.1| - 0.13 12.1 0.0 0.13 12.1 0.0 2.2 3 1 0 3 3 2 0 AAA domain PduV-EutP PF10662.4 gi|284166068|ref|YP_003404347.1| - 0.15 11.5 0.0 0.26 10.7 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation ABC_ATPase PF09818.4 gi|284166068|ref|YP_003404347.1| - 0.15 10.5 0.1 4.4 5.7 0.0 2.6 2 1 0 2 2 2 0 Predicted ATPase of the ABC class NB-ARC PF00931.17 gi|284166068|ref|YP_003404347.1| - 0.16 10.7 0.0 0.28 9.9 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain BPD_transp_1 PF00528.17 gi|284166069|ref|YP_003404348.1| - 1.1e-22 80.4 11.4 1.8e-22 79.7 7.9 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component DUF2157 PF09925.4 gi|284166069|ref|YP_003404348.1| - 0.017 14.7 1.0 0.017 14.7 0.7 2.2 2 0 0 2 2 2 0 Predicted membrane protein (DUF2157) NMT1_2 PF13379.1 gi|284166070|ref|YP_003404349.1| - 3e-35 121.8 0.0 3.7e-35 121.5 0.0 1.1 1 0 0 1 1 1 1 NMT1-like family Phosphonate-bd PF12974.2 gi|284166070|ref|YP_003404349.1| - 0.016 14.5 0.9 0.055 12.8 0.1 2.1 2 1 0 2 2 2 0 ABC transporter, phosphonate, periplasmic substrate-binding protein BPL_LplA_LipB PF03099.14 gi|284166071|ref|YP_003404350.1| - 2.1e-16 60.0 0.0 3.6e-16 59.3 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family ABC2_membrane_4 PF12730.2 gi|284166072|ref|YP_003404351.1| - 0.0055 15.8 2.2 0.0061 15.7 1.5 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein DUF2207 PF09972.4 gi|284166072|ref|YP_003404351.1| - 0.11 10.9 0.2 0.13 10.7 0.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF1469 PF07332.6 gi|284166072|ref|YP_003404351.1| - 0.86 9.3 6.0 1.1 8.9 4.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) Methyltransf_11 PF08241.7 gi|284166073|ref|YP_003404352.1| - 3.7e-22 78.6 0.3 8.5e-22 77.4 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|284166073|ref|YP_003404352.1| - 6.4e-16 58.4 0.0 7.9e-16 58.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|284166073|ref|YP_003404352.1| - 6.4e-15 55.0 0.0 8.7e-15 54.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|284166073|ref|YP_003404352.1| - 9.7e-15 54.8 0.0 1.7e-14 54.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|284166073|ref|YP_003404352.1| - 3.9e-12 46.7 0.0 6.6e-12 46.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|284166073|ref|YP_003404352.1| - 5.2e-12 45.3 0.0 7e-12 44.9 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|284166073|ref|YP_003404352.1| - 9.2e-12 45.2 0.0 4.5e-11 42.9 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|284166073|ref|YP_003404352.1| - 3.5e-10 39.9 0.4 1.1e-09 38.3 0.1 1.8 2 0 0 2 2 2 1 Methyltransferase domain MetW PF07021.7 gi|284166073|ref|YP_003404352.1| - 2.1e-06 27.2 0.0 3.1e-06 26.7 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW MTS PF05175.9 gi|284166073|ref|YP_003404352.1| - 0.026 13.8 0.0 0.044 13.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_29 PF03141.11 gi|284166073|ref|YP_003404352.1| - 0.065 11.5 0.0 0.081 11.2 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_8 PF05148.10 gi|284166073|ref|YP_003404352.1| - 0.076 12.6 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 Hypothetical methyltransferase Carb_kinase PF01256.12 gi|284166074|ref|YP_003404353.1| - 1.1e-31 109.9 0.5 1.5e-31 109.5 0.4 1.1 1 0 0 1 1 1 1 Carbohydrate kinase HK PF02110.10 gi|284166074|ref|YP_003404353.1| - 7.9e-05 21.9 1.0 0.0068 15.6 0.1 2.1 2 0 0 2 2 2 2 Hydroxyethylthiazole kinase family PfkB PF00294.19 gi|284166074|ref|YP_003404353.1| - 0.067 12.3 0.9 0.11 11.5 0.3 1.5 2 0 0 2 2 2 0 pfkB family carbohydrate kinase Pribosyltran PF00156.22 gi|284166075|ref|YP_003404354.1| - 1.8e-26 92.3 0.4 2.7e-26 91.7 0.3 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|284166075|ref|YP_003404354.1| - 0.00015 21.0 0.0 0.0002 20.6 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|284166075|ref|YP_003404354.1| - 0.0013 18.0 0.0 0.0097 15.2 0.0 1.9 2 0 0 2 2 2 1 Phosphoribosyl transferase TraB PF01963.12 gi|284166076|ref|YP_003404355.1| - 1.5e-21 77.0 0.5 2.3e-21 76.4 0.4 1.2 1 0 0 1 1 1 1 TraB family DUF399 PF04187.8 gi|284166076|ref|YP_003404355.1| - 0.028 13.8 0.0 0.042 13.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF399 ELFV_dehydrog PF00208.16 gi|284166077|ref|YP_003404356.1| - 3.4e-71 239.6 0.1 5.2e-71 239.0 0.0 1.3 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|284166077|ref|YP_003404356.1| - 1.4e-50 170.2 0.0 2.4e-50 169.5 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|284166077|ref|YP_003404356.1| - 0.00046 19.3 0.0 0.00084 18.5 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Mycobact_memb PF05423.8 gi|284166077|ref|YP_003404356.1| - 0.0037 17.0 0.1 0.008 15.9 0.1 1.5 1 0 0 1 1 1 1 Mycobacterium membrane protein IlvN PF07991.7 gi|284166077|ref|YP_003404356.1| - 0.094 12.0 0.0 0.19 11.1 0.0 1.5 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain DUF1272 PF06906.6 gi|284166078|ref|YP_003404357.1| - 0.0011 18.8 1.0 0.0012 18.6 0.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) DZR PF12773.2 gi|284166078|ref|YP_003404357.1| - 0.0024 17.6 1.0 0.003 17.3 0.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|284166078|ref|YP_003404357.1| - 0.0031 17.1 2.5 0.48 10.1 0.2 2.1 1 1 1 2 2 2 2 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.5 gi|284166078|ref|YP_003404357.1| - 0.011 15.6 4.6 0.05 13.5 3.2 1.9 1 1 0 1 1 1 0 Zinc ribbon domain HypA PF01155.14 gi|284166078|ref|YP_003404357.1| - 0.018 14.6 0.1 0.019 14.6 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-C2HC5 PF06221.8 gi|284166078|ref|YP_003404357.1| - 0.02 14.6 0.2 0.025 14.3 0.1 1.1 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type zf-IS66 PF13005.2 gi|284166078|ref|YP_003404357.1| - 0.029 14.3 1.8 0.086 12.8 0.2 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Ogr_Delta PF04606.7 gi|284166078|ref|YP_003404357.1| - 0.029 14.0 1.2 0.3 10.7 0.1 2.1 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-RING_3 PF14369.1 gi|284166078|ref|YP_003404357.1| - 0.039 13.9 1.6 0.061 13.3 1.1 1.4 1 0 0 1 1 1 0 zinc-finger NOB1_Zn_bind PF08772.6 gi|284166078|ref|YP_003404357.1| - 0.055 13.2 1.3 0.07 12.9 0.9 1.2 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like YhfH PF14149.1 gi|284166078|ref|YP_003404357.1| - 0.059 13.1 1.4 1.8 8.4 0.1 2.1 1 1 1 2 2 2 0 YhfH-like protein zf-Mss51 PF13824.1 gi|284166078|ref|YP_003404357.1| - 0.072 12.9 5.3 0.13 12.1 0.2 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF678 PF05077.7 gi|284166078|ref|YP_003404357.1| - 0.075 13.0 0.1 2.3 8.2 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF678) zf-C4_Topoisom PF01396.14 gi|284166078|ref|YP_003404357.1| - 0.076 12.5 1.0 0.087 12.3 0.1 1.5 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zinc-ribbons_6 PF07191.7 gi|284166078|ref|YP_003404357.1| - 0.11 12.3 0.2 0.14 11.9 0.1 1.2 1 0 0 1 1 1 0 zinc-ribbons DUF35_N PF12172.3 gi|284166078|ref|YP_003404357.1| - 0.11 12.4 2.1 0.16 11.8 1.5 1.2 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_2 PF13240.1 gi|284166078|ref|YP_003404357.1| - 0.11 12.0 3.8 0.36 10.3 2.6 1.8 1 1 1 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|284166078|ref|YP_003404357.1| - 0.18 11.0 3.7 0.39 9.9 2.5 1.6 1 1 0 1 1 1 0 zinc-ribbon domain TFIIS_C PF01096.13 gi|284166078|ref|YP_003404357.1| - 0.2 11.2 2.1 9.4 5.9 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DNA_RNApol_7kD PF03604.8 gi|284166078|ref|YP_003404357.1| - 0.21 11.0 1.5 0.66 9.4 1.0 1.8 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Zn_Tnp_IS1595 PF12760.2 gi|284166078|ref|YP_003404357.1| - 0.23 11.3 2.5 2.2 8.1 0.2 2.1 1 1 2 3 3 3 0 Transposase zinc-ribbon domain zf-CCHC_6 PF15288.1 gi|284166078|ref|YP_003404357.1| - 0.29 10.8 1.5 0.48 10.1 1.0 1.4 1 0 0 1 1 1 0 Zinc knuckle TF_Zn_Ribbon PF08271.7 gi|284166078|ref|YP_003404357.1| - 0.4 10.0 7.7 1.9 7.8 0.5 2.1 1 1 0 2 2 2 0 TFIIB zinc-binding Prok-RING_1 PF14446.1 gi|284166078|ref|YP_003404357.1| - 0.52 10.0 3.5 0.94 9.2 2.4 1.4 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 zf-C2H2 PF00096.21 gi|284166078|ref|YP_003404357.1| - 0.6 10.5 3.3 16 6.1 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type Prim_Zn_Ribbon PF08273.7 gi|284166078|ref|YP_003404357.1| - 0.79 9.8 5.6 10 6.2 1.1 2.1 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase DUF2387 PF09526.5 gi|284166078|ref|YP_003404357.1| - 1.4 8.8 4.2 6.3 6.7 0.1 2.1 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) UPF0547 PF10571.4 gi|284166078|ref|YP_003404357.1| - 2.8 7.7 4.7 7.5 6.3 3.3 1.7 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 GAF_2 PF13185.1 gi|284166079|ref|YP_003404358.1| - 1.2e-24 87.4 9.6 6.1e-14 52.7 0.6 2.9 2 0 0 2 2 2 2 GAF domain GAF_3 PF13492.1 gi|284166079|ref|YP_003404358.1| - 9.2e-21 74.2 3.1 1.9e-11 44.1 0.3 2.8 2 0 0 2 2 2 2 GAF domain HTH_10 PF04967.7 gi|284166079|ref|YP_003404358.1| - 2.6e-16 58.9 0.0 5.8e-16 57.8 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain PAS_4 PF08448.5 gi|284166079|ref|YP_003404358.1| - 1.4e-11 44.4 13.3 5.2e-06 26.4 3.2 5.5 2 1 1 3 3 3 2 PAS fold PAS_9 PF13426.1 gi|284166079|ref|YP_003404358.1| - 3.3e-11 43.4 0.7 3.7e-06 27.2 0.0 3.1 2 0 0 2 2 2 2 PAS domain Response_reg PF00072.19 gi|284166079|ref|YP_003404358.1| - 2.3e-08 33.9 0.0 6.7e-08 32.5 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain PAS_8 PF13188.1 gi|284166079|ref|YP_003404358.1| - 0.00019 21.1 0.1 0.027 14.3 0.0 3.1 2 0 0 2 2 2 1 PAS domain PAS PF00989.19 gi|284166079|ref|YP_003404358.1| - 0.0019 17.9 0.1 0.6 9.9 0.0 3.0 2 0 0 2 2 2 1 PAS fold HTH_22 PF13309.1 gi|284166079|ref|YP_003404358.1| - 0.046 13.4 0.2 0.2 11.4 0.0 2.3 2 0 0 2 2 2 0 HTH domain Mga PF05043.8 gi|284166079|ref|YP_003404358.1| - 0.062 13.5 0.0 2.8 8.2 0.0 2.5 1 1 1 2 2 2 0 Mga helix-turn-helix domain ERCC4 PF02732.10 gi|284166080|ref|YP_003404359.1| - 3e-13 49.7 0.0 5.6e-13 48.8 0.0 1.4 2 0 0 2 2 2 1 ERCC4 domain HHH_5 PF14520.1 gi|284166080|ref|YP_003404359.1| - 5.5e-11 42.4 0.1 3e-10 40.1 0.0 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|284166080|ref|YP_003404359.1| - 9e-11 41.4 0.0 2.3e-10 40.2 0.0 1.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH PF00633.18 gi|284166080|ref|YP_003404359.1| - 2.3e-07 30.1 0.9 3.5e-05 23.2 0.1 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix motif HhH-GPD PF00730.20 gi|284166080|ref|YP_003404359.1| - 0.0026 18.0 0.0 0.0068 16.6 0.0 1.6 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein 5_3_exonuc PF01367.15 gi|284166080|ref|YP_003404359.1| - 0.046 13.9 0.0 0.14 12.4 0.0 1.8 1 1 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold HHH_3 PF12836.2 gi|284166080|ref|YP_003404359.1| - 0.15 12.0 0.0 0.54 10.2 0.0 1.9 2 0 0 2 2 2 0 Helix-hairpin-helix motif Virul_fac_BrkB PF03631.10 gi|284166081|ref|YP_003404360.1| - 6.3e-33 114.2 29.0 7.8e-33 113.9 20.1 1.0 1 0 0 1 1 1 1 Virulence factor BrkB DUF1077 PF06417.7 gi|284166081|ref|YP_003404360.1| - 0.018 14.3 0.2 0.043 13.1 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1077) ABC2_membrane_5 PF13346.1 gi|284166081|ref|YP_003404360.1| - 0.11 11.8 10.1 0.2 10.9 7.0 1.4 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF2196 PF09962.4 gi|284166082|ref|YP_003404361.1| - 2.4e-06 27.1 0.3 2.7e-06 27.0 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2196) Abhydrolase_6 PF12697.2 gi|284166084|ref|YP_003404363.1| - 3.3e-11 43.5 1.3 4e-11 43.2 0.9 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|284166084|ref|YP_003404363.1| - 3.5e-09 36.5 0.0 4.5e-09 36.2 0.0 1.3 1 1 0 1 1 1 1 Alpha/beta hydrolase family Thioesterase PF00975.15 gi|284166084|ref|YP_003404363.1| - 0.031 14.4 0.0 0.061 13.5 0.0 1.4 1 0 0 1 1 1 0 Thioesterase domain HATPase_c PF02518.21 gi|284166085|ref|YP_003404364.1| - 1.2e-17 63.6 0.0 2e-17 62.9 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|284166085|ref|YP_003404364.1| - 2.4e-10 40.2 0.1 3.9e-10 39.5 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA PF00512.20 gi|284166085|ref|YP_003404364.1| - 4.6e-05 23.3 1.6 0.0003 20.7 0.2 2.4 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.1 gi|284166085|ref|YP_003404364.1| - 0.00048 19.7 0.0 0.00088 18.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|284166085|ref|YP_003404364.1| - 0.0026 17.4 0.0 0.0045 16.6 0.0 1.4 1 0 0 1 1 1 1 GHKL domain Lzipper-MIP1 PF14389.1 gi|284166085|ref|YP_003404364.1| - 0.091 12.8 1.5 2 8.5 0.3 2.3 2 0 0 2 2 2 0 Leucine-zipper of ternary complex factor MIP1 ATP_bind_3 PF01171.15 gi|284166087|ref|YP_003404366.1| - 4.5e-13 49.1 0.0 6.9e-13 48.4 0.0 1.3 1 0 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.14 gi|284166087|ref|YP_003404366.1| - 2.2e-05 24.3 0.0 3.8e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.12 gi|284166087|ref|YP_003404366.1| - 6.9e-05 21.8 0.0 0.00012 21.1 0.0 1.3 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|284166087|ref|YP_003404366.1| - 0.00098 17.7 0.0 0.0017 17.0 0.0 1.3 1 1 0 1 1 1 1 tRNA methyl transferase RecR PF02132.10 gi|284166087|ref|YP_003404366.1| - 0.0048 16.3 5.5 0.0091 15.4 1.6 2.9 3 0 0 3 3 3 1 RecR protein DUF2392 PF10288.4 gi|284166087|ref|YP_003404366.1| - 0.0098 16.2 0.0 0.021 15.1 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF2392) Asn_synthase PF00733.16 gi|284166087|ref|YP_003404366.1| - 0.073 12.5 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 Asparagine synthase FtsZ_C PF12327.3 gi|284166088|ref|YP_003404367.1| - 3.5e-35 119.9 4.7 5.2e-35 119.3 0.4 2.9 2 1 1 3 3 3 1 FtsZ family, C-terminal domain Tubulin PF00091.20 gi|284166088|ref|YP_003404367.1| - 2.4e-33 115.7 2.9 1.3e-32 113.4 2.0 2.1 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain ThiF PF00899.16 gi|284166088|ref|YP_003404367.1| - 0.02 14.7 0.0 0.079 12.7 0.0 2.0 2 0 0 2 2 2 0 ThiF family RHH_1 PF01402.16 gi|284166089|ref|YP_003404368.1| - 1.8e-07 30.7 0.1 2.1e-07 30.5 0.1 1.1 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family DZR PF12773.2 gi|284166090|ref|YP_003404369.1| - 4.2e-11 42.4 20.7 5.2e-08 32.5 7.5 1.7 1 1 1 2 2 2 2 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|284166090|ref|YP_003404369.1| - 1.9e-09 36.4 14.0 4.8e-06 25.5 3.4 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|284166090|ref|YP_003404369.1| - 9.7e-08 31.2 13.7 3e-05 23.3 3.6 2.4 2 0 0 2 2 2 2 zinc-ribbon domain UPF0547 PF10571.4 gi|284166090|ref|YP_003404369.1| - 0.00039 20.0 10.2 0.014 15.0 2.6 2.2 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 Prok-RING_1 PF14446.1 gi|284166090|ref|YP_003404369.1| - 0.002 17.8 10.6 0.0049 16.5 2.4 2.3 1 1 1 2 2 2 1 Prokaryotic RING finger family 1 zf-NADH-PPase PF09297.6 gi|284166090|ref|YP_003404369.1| - 0.002 17.5 12.2 0.076 12.5 0.1 3.6 3 0 0 3 3 3 2 NADH pyrophosphatase zinc ribbon domain RHH_1 PF01402.16 gi|284166090|ref|YP_003404369.1| - 0.0045 16.8 2.0 0.0045 16.8 1.4 3.5 3 1 0 3 3 2 1 Ribbon-helix-helix protein, copG family Cys_rich_KTR PF14205.1 gi|284166090|ref|YP_003404369.1| - 0.0099 15.3 2.7 1.8 8.0 0.1 2.8 3 0 0 3 3 3 2 Cysteine-rich KTR Nudix_N_2 PF14803.1 gi|284166090|ref|YP_003404369.1| - 0.018 14.7 11.4 3.2 7.5 0.1 4.1 3 1 1 4 4 4 0 Nudix N-terminal Zn-ribbon_8 PF09723.5 gi|284166090|ref|YP_003404369.1| - 0.019 14.8 11.7 0.4 10.6 0.1 3.6 2 2 1 3 3 3 0 Zinc ribbon domain CcdA PF07362.7 gi|284166090|ref|YP_003404369.1| - 0.085 12.7 0.2 0.18 11.6 0.1 1.5 1 1 0 1 1 1 0 Post-segregation antitoxin CcdA PolC_DP2 PF03833.8 gi|284166090|ref|YP_003404369.1| - 0.089 10.4 4.1 0.12 10.0 2.8 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 DUF164 PF02591.10 gi|284166090|ref|YP_003404369.1| - 0.16 11.8 6.0 9.8 6.0 0.1 3.4 3 0 0 3 3 3 0 Putative zinc ribbon domain Ribosomal_L32p PF01783.18 gi|284166090|ref|YP_003404369.1| - 0.24 11.5 1.3 0.38 10.9 0.3 1.8 1 1 1 2 2 2 0 Ribosomal L32p protein family zinc-ribbons_6 PF07191.7 gi|284166090|ref|YP_003404369.1| - 0.55 10.0 8.7 1.9 8.3 3.9 2.1 1 1 1 2 2 2 0 zinc-ribbons DUF2321 PF10083.4 gi|284166090|ref|YP_003404369.1| - 0.89 9.0 4.4 1.9 7.9 1.2 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2321) PSK_trans_fac PF07704.6 gi|284166090|ref|YP_003404369.1| - 1.3 9.7 6.7 16 6.2 4.2 2.4 1 1 0 1 1 1 0 Rv0623-like transcription factor zf-C2H2 PF00096.21 gi|284166090|ref|YP_003404369.1| - 2.4 8.6 4.2 20 5.7 0.0 3.2 3 0 0 3 3 3 0 Zinc finger, C2H2 type NOB1_Zn_bind PF08772.6 gi|284166090|ref|YP_003404369.1| - 3.6 7.4 12.8 8.8 6.2 3.9 2.6 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like DUF2191 PF09957.4 gi|284166090|ref|YP_003404369.1| - 4.2 7.2 6.9 0.65 9.8 1.4 2.2 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2191) MR_MLE_C PF13378.1 gi|284166091|ref|YP_003404370.1| - 7.8e-16 58.0 0.1 2.3e-15 56.5 0.1 1.9 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|284166091|ref|YP_003404370.1| - 2.9e-11 43.7 0.3 1.3e-10 41.6 0.0 2.3 3 0 0 3 3 3 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_N PF02746.11 gi|284166091|ref|YP_003404370.1| - 4.6e-08 33.0 0.0 7.4e-08 32.3 0.0 1.3 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain PAS_9 PF13426.1 gi|284166092|ref|YP_003404371.1| - 4.3e-61 203.7 2.0 4.9e-16 59.0 0.0 5.6 5 0 0 5 5 5 5 PAS domain PAS_4 PF08448.5 gi|284166092|ref|YP_003404371.1| - 9.8e-57 189.7 25.7 9.9e-15 54.5 1.3 5.8 5 0 0 5 5 5 5 PAS fold PAS PF00989.19 gi|284166092|ref|YP_003404371.1| - 5.4e-44 148.5 5.2 2e-10 40.4 0.0 6.2 6 0 0 6 6 6 5 PAS fold PAS_3 PF08447.6 gi|284166092|ref|YP_003404371.1| - 2e-32 111.1 5.5 2.4e-21 75.6 0.0 6.8 6 1 0 6 6 6 3 PAS fold HATPase_c PF02518.21 gi|284166092|ref|YP_003404371.1| - 1.9e-31 108.0 0.0 7.4e-31 106.1 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|284166092|ref|YP_003404371.1| - 3.3e-24 83.8 6.8 3.9e-05 23.3 0.1 6.4 6 0 0 6 6 6 5 PAS domain PAS_7 PF12860.2 gi|284166092|ref|YP_003404371.1| - 1.7e-13 50.5 9.3 0.0059 16.6 0.0 6.8 5 3 0 5 5 5 4 PAS fold GAF_2 PF13185.1 gi|284166092|ref|YP_003404371.1| - 2.9e-12 47.2 5.6 7.7e-10 39.4 0.1 4.2 4 0 0 4 4 4 2 GAF domain HisKA PF00512.20 gi|284166092|ref|YP_003404371.1| - 2.6e-11 43.3 0.3 2.6e-11 43.3 0.2 3.5 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain GAF_3 PF13492.1 gi|284166092|ref|YP_003404371.1| - 1.2e-08 35.0 0.3 1.3e-07 31.7 0.0 3.0 4 0 0 4 4 4 1 GAF domain PAS_10 PF13596.1 gi|284166092|ref|YP_003404371.1| - 2e-06 28.0 0.0 9.2 6.5 0.0 6.1 4 2 0 5 5 5 1 PAS domain HATPase_c_5 PF14501.1 gi|284166092|ref|YP_003404371.1| - 0.0012 18.4 0.0 0.76 9.5 0.0 2.4 2 0 0 2 2 2 2 GHKL domain HATPase_c_3 PF13589.1 gi|284166092|ref|YP_003404371.1| - 0.15 11.6 0.0 0.34 10.5 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase eIF-5_eIF-2B PF01873.12 gi|284166095|ref|YP_003404374.1| - 2.8e-30 104.5 0.0 4.1e-30 103.9 0.0 1.2 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.15 gi|284166095|ref|YP_003404374.1| - 3.9e-09 36.1 1.0 8.5e-09 35.0 0.7 1.6 1 0 0 1 1 1 1 TRAM domain CBM_4_9 PF02018.12 gi|284166095|ref|YP_003404374.1| - 0.017 15.1 0.1 0.03 14.3 0.1 1.4 1 0 0 1 1 1 0 Carbohydrate binding domain Zn-ribbon_8 PF09723.5 gi|284166095|ref|YP_003404374.1| - 0.13 12.2 0.5 0.23 11.4 0.3 1.5 1 0 0 1 1 1 0 Zinc ribbon domain DUF2387 PF09526.5 gi|284166095|ref|YP_003404374.1| - 0.2 11.5 1.8 0.41 10.6 1.3 1.5 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) Lar_restr_allev PF14354.1 gi|284166095|ref|YP_003404374.1| - 0.26 11.6 1.7 18 5.7 0.1 2.3 1 1 1 2 2 2 0 Restriction alleviation protein Lar HTH_24 PF13412.1 gi|284166096|ref|YP_003404375.1| - 0.00073 18.8 0.0 0.002 17.4 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|284166096|ref|YP_003404375.1| - 0.0033 17.0 0.0 0.015 14.9 0.0 2.1 1 1 1 2 2 2 1 MarR family MarR_2 PF12802.2 gi|284166096|ref|YP_003404375.1| - 0.0036 16.9 0.2 0.039 13.6 0.0 2.4 2 1 0 2 2 2 1 MarR family GntR PF00392.16 gi|284166096|ref|YP_003404375.1| - 0.0046 16.3 0.2 0.011 15.0 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.1 gi|284166096|ref|YP_003404375.1| - 0.013 15.2 0.0 0.026 14.3 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_IclR PF09339.5 gi|284166096|ref|YP_003404375.1| - 0.04 13.5 0.0 0.099 12.2 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain Penicillinase_R PF03965.11 gi|284166096|ref|YP_003404375.1| - 0.061 13.4 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor HAD_2 PF13419.1 gi|284166097|ref|YP_003404376.1| - 1.4e-18 67.7 0.0 1.9e-18 67.2 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|284166097|ref|YP_003404376.1| - 5.7e-08 33.4 0.1 3.4e-07 30.9 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|284166097|ref|YP_003404376.1| - 0.0085 15.7 0.0 0.018 14.7 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like CobD_Cbib PF03186.8 gi|284166098|ref|YP_003404377.1| - 9.7e-70 234.9 13.5 3e-67 226.7 9.4 2.1 1 1 0 1 1 1 1 CobD/Cbib protein CobS PF02654.10 gi|284166099|ref|YP_003404378.1| - 9.6e-42 143.1 7.9 1.2e-41 142.9 5.5 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase DUF4131 PF13567.1 gi|284166099|ref|YP_003404378.1| - 3.1 7.1 8.6 2 7.7 1.3 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) NTP_transf_3 PF12804.2 gi|284166100|ref|YP_003404379.1| - 8e-16 58.5 1.6 2.4e-15 56.9 0.9 1.7 1 1 1 2 2 2 1 MobA-like NTP transferase domain IspD PF01128.14 gi|284166100|ref|YP_003404379.1| - 0.0042 16.6 0.1 0.0055 16.2 0.1 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DBI_PRT PF02277.12 gi|284166101|ref|YP_003404380.1| - 8.3e-20 71.1 2.6 1.3e-19 70.4 1.8 1.3 1 0 0 1 1 1 1 Phosphoribosyltransferase DeoRC PF00455.17 gi|284166101|ref|YP_003404380.1| - 0.26 10.9 1.9 0.73 9.4 0.4 2.0 2 0 0 2 2 2 0 DeoR C terminal sensor domain Aminotran_1_2 PF00155.16 gi|284166102|ref|YP_003404381.1| - 1.4e-36 126.2 0.0 1.6e-36 126.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|284166102|ref|YP_003404381.1| - 0.0068 14.7 0.0 0.0094 14.2 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|284166102|ref|YP_003404381.1| - 0.032 13.2 0.0 0.056 12.4 0.0 1.4 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family CbiZ PF01955.13 gi|284166103|ref|YP_003404382.1| - 2.5e-45 154.6 2.0 3.4e-45 154.1 1.4 1.2 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase Zip PF02535.17 gi|284166104|ref|YP_003404383.1| - 0.97 8.3 24.3 0.48 9.3 9.5 2.1 1 1 1 2 2 2 0 ZIP Zinc transporter Rab5ip PF07019.7 gi|284166104|ref|YP_003404383.1| - 2.7 8.2 10.4 0.22 11.6 1.9 2.9 3 1 0 3 3 3 0 Rab5-interacting protein (Rab5ip) Amidohydro_2 PF04909.9 gi|284166107|ref|YP_003404386.1| - 1.1e-24 87.4 6.7 1.5e-24 87.0 4.6 1.2 1 0 0 1 1 1 1 Amidohydrolase TatD_DNase PF01026.16 gi|284166107|ref|YP_003404386.1| - 0.00014 21.1 0.0 0.00067 18.9 0.0 2.0 1 1 0 1 1 1 1 TatD related DNase PRC PF05239.11 gi|284166108|ref|YP_003404387.1| - 0.032 14.0 2.1 0.038 13.8 1.4 1.5 1 1 0 1 1 1 0 PRC-barrel domain FAA_hydrolase PF01557.13 gi|284166109|ref|YP_003404388.1| - 8.7e-29 100.5 0.7 1.1e-28 100.2 0.5 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family CxxCxxCC PF03692.10 gi|284166111|ref|YP_003404390.1| - 1.1e-05 25.8 2.2 1.9e-05 25.0 1.6 1.4 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF834 PF05754.9 gi|284166111|ref|YP_003404390.1| - 0.0089 15.8 0.4 0.016 14.9 0.3 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF834) eIF-1a PF01176.14 gi|284166112|ref|YP_003404391.1| - 6.2e-22 76.8 0.1 7.2e-22 76.5 0.0 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 HTH_24 PF13412.1 gi|284166113|ref|YP_003404392.1| - 9e-13 47.4 0.2 1.6e-12 46.6 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|284166113|ref|YP_003404392.1| - 2.4e-11 43.0 1.4 4.3e-11 42.1 0.9 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|284166113|ref|YP_003404392.1| - 1.2e-08 34.4 0.1 2.3e-08 33.5 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|284166113|ref|YP_003404392.1| - 1.1e-07 31.5 0.0 1.9e-07 30.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|284166113|ref|YP_003404392.1| - 8.2e-06 25.3 0.1 1.6e-05 24.4 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_38 PF13936.1 gi|284166113|ref|YP_003404392.1| - 3.4e-05 23.3 0.0 8.6e-05 22.0 0.0 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|284166113|ref|YP_003404392.1| - 0.00015 21.2 0.6 0.00065 19.1 0.0 2.2 3 0 0 3 3 3 1 DeoR-like helix-turn-helix domain Sigma70_r4 PF04545.11 gi|284166113|ref|YP_003404392.1| - 0.0015 17.7 0.1 0.0057 15.9 0.0 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_28 PF13518.1 gi|284166113|ref|YP_003404392.1| - 0.0016 18.3 0.0 0.0056 16.6 0.0 1.8 2 0 0 2 2 1 1 Helix-turn-helix domain GntR PF00392.16 gi|284166113|ref|YP_003404392.1| - 0.0018 17.6 0.0 0.0035 16.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_CodY PF08222.6 gi|284166113|ref|YP_003404392.1| - 0.002 17.4 0.4 0.0052 16.0 0.1 1.8 2 0 0 2 2 2 1 CodY helix-turn-helix domain TrmB PF01978.14 gi|284166113|ref|YP_003404392.1| - 0.002 17.8 0.0 0.004 16.8 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|284166113|ref|YP_003404392.1| - 0.0024 18.1 0.3 0.0083 16.4 0.0 2.0 2 1 0 2 2 2 1 Winged helix DNA-binding domain HTH_23 PF13384.1 gi|284166113|ref|YP_003404392.1| - 0.0026 17.3 0.0 0.005 16.4 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain MarR PF01047.17 gi|284166113|ref|YP_003404392.1| - 0.0027 17.3 0.0 0.0054 16.4 0.0 1.5 1 0 0 1 1 1 1 MarR family HrcA_DNA-bdg PF03444.10 gi|284166113|ref|YP_003404392.1| - 0.0059 16.0 0.0 0.01 15.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_5 PF01022.15 gi|284166113|ref|YP_003404392.1| - 0.0067 16.0 0.0 0.014 15.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.15 gi|284166113|ref|YP_003404392.1| - 0.0073 16.4 0.0 0.013 15.5 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator GerE PF00196.14 gi|284166113|ref|YP_003404392.1| - 0.011 15.0 0.0 0.021 14.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_IclR PF09339.5 gi|284166113|ref|YP_003404392.1| - 0.012 15.1 0.1 0.035 13.6 0.0 1.7 2 0 0 2 2 2 0 IclR helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|284166113|ref|YP_003404392.1| - 0.017 14.5 0.1 0.04 13.3 0.1 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 Fe_dep_repress PF01325.14 gi|284166113|ref|YP_003404392.1| - 0.026 14.4 0.0 0.047 13.6 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_Tnp_ISL3 PF13542.1 gi|284166113|ref|YP_003404392.1| - 0.054 12.6 0.1 0.1 11.7 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 FaeA PF04703.7 gi|284166113|ref|YP_003404392.1| - 0.095 12.8 0.0 0.23 11.6 0.0 1.7 1 0 0 1 1 1 0 FaeA-like protein HTH_10 PF04967.7 gi|284166113|ref|YP_003404392.1| - 0.096 12.2 0.1 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 HTH DNA binding domain CSD PF00313.17 gi|284166114|ref|YP_003404393.1| - 2.1e-19 69.0 0.2 2.3e-19 68.9 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|284166114|ref|YP_003404393.1| - 0.0023 17.6 0.1 0.0026 17.4 0.1 1.3 1 1 0 1 1 1 1 S1-like OB_RNB PF08206.6 gi|284166114|ref|YP_003404393.1| - 0.046 13.2 2.3 0.069 12.6 1.6 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain FbpA PF05833.6 gi|284166116|ref|YP_003404395.1| - 3.9e-84 282.7 0.0 7.6e-84 281.8 0.0 1.4 1 1 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|284166116|ref|YP_003404395.1| - 2.8e-26 91.2 0.0 4.6e-26 90.5 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF814) THOC7 PF05615.8 gi|284166116|ref|YP_003404395.1| - 1.2 9.4 6.6 8.9 6.5 0.5 2.5 2 0 0 2 2 2 0 Tho complex subunit 7 DUF4337 PF14235.1 gi|284166116|ref|YP_003404395.1| - 2.9 7.7 6.7 2.7 7.8 0.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4337) BssS PF13991.1 gi|284166117|ref|YP_003404396.1| - 6.4e-05 22.6 0.1 9.8e-05 22.0 0.1 1.3 1 0 0 1 1 1 1 BssS protein family WPP PF13943.1 gi|284166117|ref|YP_003404396.1| - 0.032 14.4 0.3 0.11 12.7 0.0 1.8 2 0 0 2 2 2 0 WPP domain NIR_SIR PF01077.17 gi|284166118|ref|YP_003404397.1| - 2.6e-41 140.5 0.0 8.5e-31 106.4 0.0 2.3 2 0 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|284166118|ref|YP_003404397.1| - 2.1e-35 120.1 0.4 3.6e-16 58.5 0.1 3.5 2 1 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain CBS PF00571.23 gi|284166121|ref|YP_003404400.1| - 2.7e-20 71.8 4.3 1.6e-11 43.7 0.2 2.5 2 1 0 2 2 2 2 CBS domain Tetraspannin PF00335.15 gi|284166122|ref|YP_003404401.1| - 1.2 8.3 7.0 1.8 7.7 4.3 1.7 1 1 0 1 1 1 0 Tetraspanin family DUF4231 PF14015.1 gi|284166122|ref|YP_003404401.1| - 1.3 9.0 6.4 0.12 12.4 0.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4231) DUF21 PF01595.15 gi|284166122|ref|YP_003404401.1| - 8.8 5.5 9.2 0.58 9.4 2.0 1.9 1 1 1 2 2 2 0 Domain of unknown function DUF21 DUF418 PF04235.7 gi|284166123|ref|YP_003404402.1| - 1e-47 161.8 15.1 1e-47 161.8 10.5 2.3 2 1 0 2 2 2 1 Protein of unknown function (DUF418) eRF1_1 PF03463.10 gi|284166124|ref|YP_003404403.1| - 7.9e-31 106.3 0.4 1.7e-30 105.2 0.3 1.5 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.10 gi|284166124|ref|YP_003404403.1| - 3e-23 82.2 0.3 1.1e-22 80.4 0.0 2.2 3 0 0 3 3 3 1 eRF1 domain 3 eRF1_2 PF03464.10 gi|284166124|ref|YP_003404403.1| - 4.8e-22 78.7 0.5 1e-21 77.6 0.3 1.6 1 0 0 1 1 1 1 eRF1 domain 2 HTH_20 PF12840.2 gi|284166126|ref|YP_003404405.1| - 0.00027 20.6 0.0 0.0011 18.7 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain PAS_5 PF07310.8 gi|284166126|ref|YP_003404405.1| - 0.011 15.2 0.1 0.97 8.9 0.0 3.1 2 1 1 4 4 4 0 PAS domain TF_Zn_Ribbon PF08271.7 gi|284166126|ref|YP_003404405.1| - 0.056 12.7 2.8 0.23 10.8 0.5 2.5 2 0 0 2 2 2 0 TFIIB zinc-binding DZR PF12773.2 gi|284166126|ref|YP_003404405.1| - 0.067 13.0 1.3 0.68 9.8 0.1 2.2 2 0 0 2 2 2 0 Double zinc ribbon ADK_lid PF05191.9 gi|284166126|ref|YP_003404405.1| - 0.29 10.8 4.6 22 4.8 0.0 3.7 4 0 0 4 4 4 0 Adenylate kinase, active site lid Lar_restr_allev PF14354.1 gi|284166126|ref|YP_003404405.1| - 0.56 10.5 4.4 5.8 7.3 0.3 2.6 2 1 0 2 2 2 0 Restriction alleviation protein Lar zf-TFIIB PF13453.1 gi|284166126|ref|YP_003404405.1| - 4.4 6.5 6.7 4.2 6.6 0.7 2.5 2 0 0 2 2 2 0 Transcription factor zinc-finger Nudix_N_2 PF14803.1 gi|284166126|ref|YP_003404405.1| - 4.7 6.9 11.0 0.47 10.1 0.9 3.4 4 0 0 4 4 4 0 Nudix N-terminal TrmB PF01978.14 gi|284166127|ref|YP_003404406.1| - 1.7e-19 69.2 0.1 4.1e-19 68.0 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.4 gi|284166127|ref|YP_003404406.1| - 0.00018 21.3 0.0 0.00031 20.5 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_IclR PF09339.5 gi|284166127|ref|YP_003404406.1| - 0.00034 20.1 0.0 0.00078 18.9 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|284166127|ref|YP_003404406.1| - 0.0031 17.1 0.0 0.0062 16.1 0.0 1.5 1 0 0 1 1 1 1 MarR family Penicillinase_R PF03965.11 gi|284166127|ref|YP_003404406.1| - 0.0091 16.0 0.1 0.037 14.1 0.0 2.1 2 1 1 3 3 3 1 Penicillinase repressor Regulator_TrmB PF11495.3 gi|284166127|ref|YP_003404406.1| - 0.011 14.7 0.1 0.015 14.3 0.1 1.2 1 0 0 1 1 1 0 Archaeal transcriptional regulator TrmB HTH_27 PF13463.1 gi|284166127|ref|YP_003404406.1| - 0.049 13.9 0.0 0.12 12.7 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain MMPL PF03176.10 gi|284166128|ref|YP_003404407.1| - 1.5e-31 109.3 25.2 3.1e-18 65.5 2.4 3.2 3 0 0 3 3 3 2 MMPL family Sterol-sensing PF12349.3 gi|284166128|ref|YP_003404407.1| - 1e-05 25.0 13.9 0.0011 18.4 1.7 2.4 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation Patched PF02460.13 gi|284166128|ref|YP_003404407.1| - 0.00028 18.9 24.5 0.00049 18.1 3.6 2.6 2 0 0 2 2 2 2 Patched family SecD_SecF PF02355.11 gi|284166128|ref|YP_003404407.1| - 0.00029 20.0 28.3 0.00048 19.3 5.8 2.5 2 0 0 2 2 2 2 Protein export membrane protein DUF1617 PF07761.7 gi|284166128|ref|YP_003404407.1| - 0.089 12.8 1.0 0.46 10.5 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1617) EF-hand_5 PF13202.1 gi|284166128|ref|YP_003404407.1| - 0.089 12.1 0.3 0.26 10.7 0.2 1.9 1 0 0 1 1 1 0 EF hand ACR_tran PF00873.14 gi|284166128|ref|YP_003404407.1| - 5.3 4.3 30.0 0.0078 13.6 4.9 2.5 3 0 0 3 3 3 0 AcrB/AcrD/AcrF family Lactamase_B_2 PF12706.2 gi|284166129|ref|YP_003404408.1| - 8.9e-16 57.9 0.1 1.1e-15 57.7 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|284166129|ref|YP_003404408.1| - 6.3e-12 45.5 2.5 8.7e-12 45.0 1.7 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|284166129|ref|YP_003404408.1| - 0.0039 16.9 0.0 0.0058 16.3 0.0 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain ADH_N PF08240.7 gi|284166130|ref|YP_003404409.1| - 1.9e-29 101.6 1.1 1.9e-29 101.6 0.7 1.8 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|284166130|ref|YP_003404409.1| - 8.4e-25 86.8 0.1 1.3e-24 86.2 0.1 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Methyltransf_18 PF12847.2 gi|284166130|ref|YP_003404409.1| - 0.0082 16.7 0.2 0.019 15.5 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain AlaDh_PNT_C PF01262.16 gi|284166130|ref|YP_003404409.1| - 0.014 14.9 0.3 0.031 13.8 0.1 1.6 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.14 gi|284166130|ref|YP_003404409.1| - 0.015 14.4 0.0 0.027 13.6 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.16 gi|284166130|ref|YP_003404409.1| - 0.034 13.7 0.0 0.05 13.1 0.0 1.2 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Polysacc_deac_1 PF01522.16 gi|284166131|ref|YP_003404410.1| - 7.2e-10 38.5 0.1 9.5e-09 34.9 0.0 2.2 1 1 0 1 1 1 1 Polysaccharide deacetylase DEAD_assoc PF08494.6 gi|284166133|ref|YP_003404412.1| - 7.6e-51 172.4 0.6 1.5e-50 171.4 0.4 1.6 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|284166133|ref|YP_003404412.1| - 8.1e-29 100.2 0.0 4.5e-28 97.8 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|284166133|ref|YP_003404412.1| - 1.8e-15 56.5 0.0 9.4e-14 51.0 0.0 2.5 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|284166133|ref|YP_003404412.1| - 1.6e-07 31.3 0.0 3.9e-07 30.0 0.0 1.6 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_22 PF13401.1 gi|284166133|ref|YP_003404412.1| - 0.0013 18.9 0.0 0.0093 16.1 0.0 2.5 2 1 0 2 2 2 1 AAA domain UvrD-helicase PF00580.16 gi|284166133|ref|YP_003404412.1| - 0.039 13.2 0.0 6.2 6.0 0.0 2.5 2 0 0 2 2 2 0 UvrD/REP helicase N-terminal domain T2SE PF00437.15 gi|284166133|ref|YP_003404412.1| - 0.049 12.5 0.0 2.2 7.1 0.0 2.3 2 0 0 2 2 2 0 Type II/IV secretion system protein Amidohydro_2 PF04909.9 gi|284166134|ref|YP_003404413.1| - 1.7e-54 185.2 0.4 2.4e-54 184.7 0.3 1.2 1 0 0 1 1 1 1 Amidohydrolase TatD_DNase PF01026.16 gi|284166134|ref|YP_003404413.1| - 0.0013 17.9 0.0 0.04 13.1 0.0 2.1 1 1 0 1 1 1 1 TatD related DNase IclR PF01614.13 gi|284166135|ref|YP_003404414.1| - 1.3e-32 112.1 0.1 2.2e-32 111.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|284166135|ref|YP_003404414.1| - 1e-13 50.6 0.0 2.2e-13 49.5 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|284166135|ref|YP_003404414.1| - 1.9e-09 36.7 0.0 4.4e-09 35.5 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|284166135|ref|YP_003404414.1| - 2.2e-09 36.8 0.0 5.2e-09 35.6 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|284166135|ref|YP_003404414.1| - 7.3e-08 32.1 0.0 2.3e-07 30.5 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|284166135|ref|YP_003404414.1| - 1.5e-07 31.0 0.0 2.9e-07 30.1 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|284166135|ref|YP_003404414.1| - 5.2e-05 22.8 0.1 0.00015 21.3 0.0 1.8 2 0 0 2 2 1 1 HTH domain HTH_5 PF01022.15 gi|284166135|ref|YP_003404414.1| - 7e-05 22.4 0.0 0.00017 21.1 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|284166135|ref|YP_003404414.1| - 9.7e-05 21.9 0.0 0.0011 18.5 0.0 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|284166135|ref|YP_003404414.1| - 0.00013 21.6 0.0 0.00029 20.5 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_23 PF13384.1 gi|284166135|ref|YP_003404414.1| - 0.00015 21.3 0.0 0.00041 19.8 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.1 gi|284166135|ref|YP_003404414.1| - 0.00023 20.6 0.0 0.00059 19.3 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|284166135|ref|YP_003404414.1| - 0.00066 19.1 0.0 0.0018 17.7 0.0 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_27 PF13463.1 gi|284166135|ref|YP_003404414.1| - 0.001 19.3 0.1 0.0036 17.6 0.1 1.9 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_10 PF04967.7 gi|284166135|ref|YP_003404414.1| - 0.0018 17.8 0.0 0.0042 16.6 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain Fe_dep_repress PF01325.14 gi|284166135|ref|YP_003404414.1| - 0.0018 18.1 0.0 0.0048 16.7 0.0 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_DeoR PF08220.7 gi|284166135|ref|YP_003404414.1| - 0.0063 16.0 0.0 0.016 14.6 0.0 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain TetR_N PF00440.18 gi|284166135|ref|YP_003404414.1| - 0.0065 16.0 0.0 0.023 14.3 0.0 1.9 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_36 PF13730.1 gi|284166135|ref|YP_003404414.1| - 0.0075 16.3 0.0 0.023 14.7 0.0 1.8 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_7 PF02796.10 gi|284166135|ref|YP_003404414.1| - 0.0098 15.7 0.0 0.035 13.9 0.0 2.0 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase GerE PF00196.14 gi|284166135|ref|YP_003404414.1| - 0.012 14.8 0.0 0.067 12.5 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_29 PF13551.1 gi|284166135|ref|YP_003404414.1| - 0.012 15.6 0.0 0.033 14.3 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn helix B-block_TFIIIC PF04182.7 gi|284166135|ref|YP_003404414.1| - 0.018 14.9 0.0 0.03 14.1 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_40 PF14493.1 gi|284166135|ref|YP_003404414.1| - 0.019 15.1 0.0 0.062 13.5 0.0 1.8 2 0 0 2 2 1 0 Helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|284166135|ref|YP_003404414.1| - 0.024 14.1 0.0 0.059 12.9 0.0 1.7 1 0 0 1 1 1 0 LexA DNA binding domain Crp PF00325.15 gi|284166135|ref|YP_003404414.1| - 0.039 13.4 0.0 0.095 12.1 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family HTH_45 PF14947.1 gi|284166135|ref|YP_003404414.1| - 0.047 13.4 0.0 0.089 12.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_34 PF13601.1 gi|284166135|ref|YP_003404414.1| - 0.063 13.3 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_28 PF13518.1 gi|284166135|ref|YP_003404414.1| - 0.063 13.3 0.0 0.2 11.7 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain LacI PF00356.16 gi|284166135|ref|YP_003404414.1| - 0.081 12.5 0.1 8.5 6.0 0.0 2.9 2 1 1 3 3 3 0 Bacterial regulatory proteins, lacI family HTH_Tnp_ISL3 PF13542.1 gi|284166135|ref|YP_003404414.1| - 0.12 11.5 0.0 0.3 10.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 SpoIIID PF12116.3 gi|284166135|ref|YP_003404414.1| - 0.12 12.3 0.1 1.2 9.1 0.0 2.4 2 1 0 2 2 2 0 Stage III sporulation protein D HD PF01966.17 gi|284166136|ref|YP_003404415.1| - 9.1e-12 45.0 0.0 1.3e-11 44.5 0.0 1.2 1 0 0 1 1 1 1 HD domain EthD PF07110.6 gi|284166137|ref|YP_003404416.1| - 5.6e-25 88.0 6.1 1.5e-11 45.0 0.2 3.5 2 2 0 2 2 2 2 EthD domain ABM PF03992.11 gi|284166137|ref|YP_003404416.1| - 0.0011 18.9 2.7 3.4 7.7 0.0 4.1 2 2 2 4 4 4 2 Antibiotic biosynthesis monooxygenase DUF4543 PF15076.1 gi|284166137|ref|YP_003404416.1| - 0.02 14.9 0.2 2.5 8.2 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4543) Glyoxalase_4 PF13669.1 gi|284166138|ref|YP_003404417.1| - 1.6e-18 66.6 0.3 2.1e-18 66.3 0.2 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|284166138|ref|YP_003404417.1| - 1.2e-05 25.3 0.2 1.3e-05 25.1 0.2 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_2 PF12681.2 gi|284166138|ref|YP_003404417.1| - 1.5e-05 25.5 0.5 4.8e-05 23.9 0.3 1.8 1 1 1 2 2 2 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|284166138|ref|YP_003404417.1| - 0.014 15.3 0.0 0.027 14.4 0.0 1.6 1 1 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DUF1778 PF08681.6 gi|284166138|ref|YP_003404417.1| - 0.13 12.0 0.0 0.35 10.7 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1778) EthD PF07110.6 gi|284166139|ref|YP_003404418.1| - 6.1e-12 46.3 2.9 1.9e-11 44.7 2.0 1.7 1 1 0 1 1 1 1 EthD domain Dabb PF07876.7 gi|284166139|ref|YP_003404418.1| - 0.022 15.1 0.0 0.028 14.8 0.0 1.3 1 0 0 1 1 1 0 Stress responsive A/B Barrel Domain TPP_enzyme_N PF02776.13 gi|284166140|ref|YP_003404419.1| - 1.9e-33 115.3 0.8 1.5e-32 112.4 0.0 2.6 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|284166140|ref|YP_003404419.1| - 1.3e-32 112.4 1.7 1.3e-32 112.4 1.2 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|284166140|ref|YP_003404419.1| - 1.9e-32 111.9 1.0 4.3e-32 110.7 0.1 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain DXP_synthase_N PF13292.1 gi|284166140|ref|YP_003404419.1| - 0.11 11.4 0.1 0.25 10.2 0.1 1.6 1 0 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase Epimerase PF01370.16 gi|284166141|ref|YP_003404420.1| - 1.7e-45 155.3 0.5 2.1e-45 154.9 0.4 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|284166141|ref|YP_003404420.1| - 7.5e-24 83.8 0.0 1e-23 83.4 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|284166141|ref|YP_003404420.1| - 4.3e-16 58.6 1.2 5.5e-16 58.2 0.8 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|284166141|ref|YP_003404420.1| - 6.2e-15 54.7 0.8 2.2e-13 49.6 0.6 2.1 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|284166141|ref|YP_003404420.1| - 1.5e-13 51.1 0.5 2.2e-13 50.6 0.4 1.3 1 0 0 1 1 1 1 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|284166141|ref|YP_003404420.1| - 9e-11 41.2 0.0 1.6e-09 37.0 0.0 2.2 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein adh_short PF00106.20 gi|284166141|ref|YP_003404420.1| - 6.1e-09 36.0 1.2 1.3e-08 34.9 0.8 1.5 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|284166141|ref|YP_003404420.1| - 2e-07 30.8 0.5 4.8e-07 29.6 0.3 1.6 1 0 0 1 1 1 1 KR domain NmrA PF05368.8 gi|284166141|ref|YP_003404420.1| - 1.2e-05 24.6 0.7 2.3e-05 23.7 0.2 1.6 2 0 0 2 2 2 1 NmrA-like family NAD_binding_2 PF03446.10 gi|284166141|ref|YP_003404420.1| - 0.051 13.4 0.2 0.34 10.7 0.0 2.1 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Saccharop_dh PF03435.13 gi|284166141|ref|YP_003404420.1| - 0.11 11.4 0.2 0.18 10.7 0.1 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase Peptidase_M24 PF00557.19 gi|284166143|ref|YP_003404422.1| - 3.8e-28 98.4 0.3 6.9e-28 97.6 0.1 1.5 2 0 0 2 2 2 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|284166143|ref|YP_003404422.1| - 3.9e-06 27.3 0.0 7.2e-06 26.5 0.0 1.5 1 1 0 1 1 1 1 Creatinase/Prolidase N-terminal domain DinB PF05163.7 gi|284166143|ref|YP_003404422.1| - 0.014 15.0 0.0 0.032 13.9 0.0 1.6 1 0 0 1 1 1 0 DinB family DUF433 PF04255.9 gi|284166143|ref|YP_003404422.1| - 0.073 12.4 0.0 0.24 10.8 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF433) Bac_luciferase PF00296.15 gi|284166144|ref|YP_003404423.1| - 5.1e-63 213.0 3.4 5.8e-63 212.8 2.4 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase 4HBT PF03061.17 gi|284166145|ref|YP_003404424.1| - 7.6e-15 54.7 0.1 1.1e-14 54.2 0.1 1.2 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.1 gi|284166145|ref|YP_003404424.1| - 8.5e-05 22.5 0.0 0.00013 21.9 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) AMP-binding_C_2 PF14535.1 gi|284166146|ref|YP_003404425.1| - 5.7e-23 80.7 0.1 1.3e-22 79.6 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|284166146|ref|YP_003404425.1| - 1.1e-18 66.8 0.2 2.3e-18 65.8 0.1 1.5 1 1 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.7 gi|284166146|ref|YP_003404425.1| - 4.7e-07 28.8 0.0 2.1e-06 26.6 0.0 1.9 2 0 0 2 2 2 1 Acyl-protein synthetase, LuxE GH3 PF03321.8 gi|284166146|ref|YP_003404425.1| - 0.092 11.2 0.0 0.16 10.4 0.0 1.4 1 0 0 1 1 1 0 GH3 auxin-responsive promoter DUF1161 PF06649.7 gi|284166146|ref|YP_003404425.1| - 0.11 12.3 0.0 2.1 8.3 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1161) TOBE_3 PF12857.2 gi|284166146|ref|YP_003404425.1| - 0.11 12.3 0.8 0.41 10.5 0.0 2.3 2 0 0 2 2 2 0 TOBE-like domain DUF2387 PF09526.5 gi|284166147|ref|YP_003404426.1| - 0.018 14.9 1.6 0.023 14.5 1.1 1.2 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) Zn_Tnp_IS1 PF03811.8 gi|284166147|ref|YP_003404426.1| - 0.033 13.6 7.1 0.11 12.0 4.8 1.9 1 1 0 1 1 1 0 InsA N-terminal domain Zn-ribbon_8 PF09723.5 gi|284166147|ref|YP_003404426.1| - 0.091 12.7 4.8 2 8.4 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|284166147|ref|YP_003404426.1| - 0.18 11.6 4.1 0.24 11.2 2.8 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Lar_restr_allev PF14354.1 gi|284166147|ref|YP_003404426.1| - 0.24 11.7 3.3 0.27 11.5 2.3 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar Prim_Zn_Ribbon PF08273.7 gi|284166147|ref|YP_003404426.1| - 0.8 9.8 5.8 2.1 8.4 4.0 1.6 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase TF_Zn_Ribbon PF08271.7 gi|284166147|ref|YP_003404426.1| - 0.91 8.8 6.0 3.4 7.0 4.1 1.9 1 1 0 1 1 1 0 TFIIB zinc-binding zf-RING_3 PF14369.1 gi|284166147|ref|YP_003404426.1| - 1.2 9.1 6.3 3.1 7.8 0.2 2.2 1 1 1 2 2 2 0 zinc-finger zf-C3HC4_3 PF13920.1 gi|284166147|ref|YP_003404426.1| - 2.3 7.9 5.8 13 5.5 0.1 2.0 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) DUF59 PF01883.14 gi|284166148|ref|YP_003404427.1| - 2.8e-20 72.0 0.6 3.8e-20 71.6 0.4 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF59 PaaA_PaaC PF05138.7 gi|284166149|ref|YP_003404428.1| - 2.1e-60 203.9 0.1 2.5e-60 203.6 0.1 1.1 1 0 0 1 1 1 1 Phenylacetic acid catabolic protein MiaE_2 PF13794.1 gi|284166149|ref|YP_003404428.1| - 0.0021 17.5 0.7 0.0037 16.7 0.5 1.4 1 0 0 1 1 1 1 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like PaaB PF06243.6 gi|284166150|ref|YP_003404429.1| - 5.3e-28 97.0 0.8 5.9e-28 96.8 0.5 1.1 1 0 0 1 1 1 1 Phenylacetic acid degradation B PaaA_PaaC PF05138.7 gi|284166151|ref|YP_003404430.1| - 4e-69 232.4 0.2 5.1e-69 232.1 0.1 1.0 1 0 0 1 1 1 1 Phenylacetic acid catabolic protein HTH_10 PF04967.7 gi|284166152|ref|YP_003404431.1| - 3.3e-17 61.8 0.0 5e-17 61.2 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_AsnC-type PF13404.1 gi|284166152|ref|YP_003404431.1| - 0.018 14.5 0.3 0.21 11.1 0.1 2.4 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|284166152|ref|YP_003404431.1| - 0.05 12.9 0.2 0.32 10.4 0.0 2.3 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding 4HBT PF03061.17 gi|284166153|ref|YP_003404432.1| - 1.2e-14 54.2 1.2 2.1e-14 53.4 0.9 1.4 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.1 gi|284166153|ref|YP_003404432.1| - 1.7e-08 34.5 0.1 2.2e-08 34.1 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) RuBisCO_large_N PF02788.11 gi|284166153|ref|YP_003404432.1| - 0.15 11.7 3.1 3 7.5 0.3 2.1 1 1 1 2 2 2 0 Ribulose bisphosphate carboxylase large chain, N-terminal domain ABC_tran PF00005.22 gi|284166154|ref|YP_003404433.1| - 7.5e-36 123.4 0.1 1.1e-35 122.9 0.1 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284166154|ref|YP_003404433.1| - 6e-11 42.8 0.1 1.9e-05 24.7 0.0 2.1 1 1 0 2 2 2 2 AAA domain NB-ARC PF00931.17 gi|284166154|ref|YP_003404433.1| - 0.00024 20.0 0.5 0.0049 15.7 0.1 2.2 2 1 0 2 2 2 1 NB-ARC domain AAA_29 PF13555.1 gi|284166154|ref|YP_003404433.1| - 0.00025 20.5 0.0 0.00063 19.2 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|284166154|ref|YP_003404433.1| - 0.0032 17.8 0.0 0.0041 17.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|284166154|ref|YP_003404433.1| - 0.0043 16.3 0.6 0.1 11.8 0.4 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain UPF0079 PF02367.12 gi|284166154|ref|YP_003404433.1| - 0.0062 16.1 0.1 0.012 15.2 0.1 1.4 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_22 PF13401.1 gi|284166154|ref|YP_003404433.1| - 0.0089 16.1 0.5 0.089 12.9 0.4 2.1 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|284166154|ref|YP_003404433.1| - 0.011 15.5 0.2 0.14 12.0 0.2 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.1 gi|284166154|ref|YP_003404433.1| - 0.039 13.9 0.1 0.058 13.3 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.1 gi|284166154|ref|YP_003404433.1| - 0.058 12.9 0.4 0.1 12.1 0.3 1.7 1 1 0 1 1 1 0 AAA domain PRK PF00485.13 gi|284166154|ref|YP_003404433.1| - 0.063 12.8 0.2 0.54 9.7 0.1 2.3 3 0 0 3 3 3 0 Phosphoribulokinase / Uridine kinase family Zeta_toxin PF06414.7 gi|284166154|ref|YP_003404433.1| - 0.066 12.3 0.1 0.22 10.6 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin DUF3584 PF12128.3 gi|284166154|ref|YP_003404433.1| - 0.068 10.5 0.2 0.094 10.0 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) ABC_ATPase PF09818.4 gi|284166154|ref|YP_003404433.1| - 0.076 11.5 2.0 4.4 5.7 0.1 2.6 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_15 PF13175.1 gi|284166154|ref|YP_003404433.1| - 0.084 11.9 0.0 0.1 11.5 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain DUF258 PF03193.11 gi|284166154|ref|YP_003404433.1| - 0.085 12.0 0.1 0.12 11.4 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function, DUF258 T2SE PF00437.15 gi|284166154|ref|YP_003404433.1| - 0.095 11.5 0.0 0.15 10.9 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein Mg_chelatase PF01078.16 gi|284166154|ref|YP_003404433.1| - 0.098 11.7 0.2 0.71 9.0 0.0 2.0 1 1 1 2 2 2 0 Magnesium chelatase, subunit ChlI SRP54 PF00448.17 gi|284166154|ref|YP_003404433.1| - 0.13 11.6 0.1 0.21 10.9 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MobB PF03205.9 gi|284166154|ref|YP_003404433.1| - 0.2 11.3 1.5 0.33 10.6 0.2 1.9 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B ABC_tran PF00005.22 gi|284166155|ref|YP_003404434.1| - 2.8e-28 98.9 0.0 4.1e-28 98.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.3 gi|284166155|ref|YP_003404434.1| - 7.1e-10 38.3 0.2 1.5e-09 37.3 0.1 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.1 gi|284166155|ref|YP_003404434.1| - 5.9e-06 26.4 0.5 2.4e-05 24.4 0.3 1.9 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|284166155|ref|YP_003404434.1| - 7.1e-05 23.2 0.5 9.1e-05 22.8 0.3 1.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|284166155|ref|YP_003404434.1| - 0.0069 15.8 0.0 0.012 15.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.1 gi|284166155|ref|YP_003404434.1| - 0.013 15.0 0.0 0.027 14.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|284166155|ref|YP_003404434.1| - 0.024 13.8 0.0 0.046 12.9 0.0 1.4 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|284166155|ref|YP_003404434.1| - 0.05 12.7 0.0 0.1 11.7 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function, DUF258 SbcCD_C PF13558.1 gi|284166155|ref|YP_003404434.1| - 0.11 12.4 0.0 0.21 11.5 0.0 1.5 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit BPD_transp_2 PF02653.11 gi|284166156|ref|YP_003404435.1| - 4.3e-79 265.2 87.3 7.8e-41 139.7 28.0 2.1 2 0 0 2 2 2 2 Branched-chain amino acid transport system / permease component Peripla_BP_6 PF13458.1 gi|284166157|ref|YP_003404436.1| - 1.4e-63 215.3 3.1 1.8e-63 215.0 2.2 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.1 gi|284166157|ref|YP_003404436.1| - 1.5e-32 112.7 1.0 1.9e-32 112.4 0.7 1.0 1 0 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.23 gi|284166157|ref|YP_003404436.1| - 1.4e-17 63.4 1.3 1.8e-17 63.1 0.9 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Usp PF00582.21 gi|284166158|ref|YP_003404437.1| - 9.9e-16 58.2 0.1 1.3e-15 57.8 0.0 1.1 1 0 0 1 1 1 1 Universal stress protein family B12-binding PF02310.14 gi|284166158|ref|YP_003404437.1| - 0.095 12.5 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 B12 binding domain PE PF00934.15 gi|284166158|ref|YP_003404437.1| - 0.12 12.4 0.6 0.61 10.2 0.1 2.1 1 1 1 2 2 2 0 PE family Acetyltransf_1 PF00583.19 gi|284166159|ref|YP_003404438.1| - 2.4e-16 59.5 0.2 5.2e-16 58.4 0.1 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.1 gi|284166159|ref|YP_003404438.1| - 1.4e-08 34.9 0.0 1.9e-08 34.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|284166159|ref|YP_003404438.1| - 1.7e-08 34.5 0.0 2.1e-08 34.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|284166159|ref|YP_003404438.1| - 2.2e-07 30.5 0.0 4.9e-07 29.4 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.1 gi|284166159|ref|YP_003404438.1| - 3.3e-07 30.3 0.0 4.7e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|284166159|ref|YP_003404438.1| - 1.4e-06 28.2 0.1 2.4e-06 27.4 0.1 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|284166159|ref|YP_003404438.1| - 3.1e-06 27.0 0.0 3.4e-05 23.7 0.0 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|284166159|ref|YP_003404438.1| - 1.4e-05 25.0 0.0 1.8e-05 24.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|284166159|ref|YP_003404438.1| - 0.0014 18.4 0.0 0.0023 17.7 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase FMN_dh PF01070.13 gi|284166159|ref|YP_003404438.1| - 0.023 13.5 0.0 0.031 13.1 0.0 1.1 1 0 0 1 1 1 0 FMN-dependent dehydrogenase YcaO PF02624.11 gi|284166159|ref|YP_003404438.1| - 0.11 11.9 1.8 0.41 10.0 0.2 2.0 1 1 1 2 2 2 0 YcaO-like family AMP-binding_C_2 PF14535.1 gi|284166160|ref|YP_003404439.1| - 9.4e-22 76.8 0.0 2.4e-21 75.5 0.0 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|284166160|ref|YP_003404439.1| - 6.1e-19 67.7 0.4 1.3e-18 66.5 0.3 1.5 1 1 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.7 gi|284166160|ref|YP_003404439.1| - 6e-06 25.1 0.0 5.6e-05 21.9 0.0 2.0 2 0 0 2 2 2 1 Acyl-protein synthetase, LuxE GH3 PF03321.8 gi|284166160|ref|YP_003404439.1| - 0.029 12.9 0.0 0.064 11.7 0.0 1.5 2 0 0 2 2 2 0 GH3 auxin-responsive promoter MaoC_dehydratas PF01575.14 gi|284166161|ref|YP_003404440.1| - 7.2e-17 60.9 0.0 8.9e-17 60.6 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|284166161|ref|YP_003404440.1| - 9.8e-07 28.6 0.3 2.4e-06 27.3 0.2 1.5 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase Abhydrolase_6 PF12697.2 gi|284166162|ref|YP_003404441.1| - 1.3e-33 116.8 4.0 1.5e-33 116.6 2.8 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|284166162|ref|YP_003404441.1| - 8.3e-15 54.9 0.2 1.6e-13 50.7 0.1 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|284166162|ref|YP_003404441.1| - 8.8e-15 54.7 0.0 3.9e-14 52.6 0.0 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family Ndr PF03096.9 gi|284166162|ref|YP_003404441.1| - 0.0027 16.2 0.0 0.0029 16.1 0.0 1.2 1 0 0 1 1 1 1 Ndr family Abhydrolase_4 PF08386.5 gi|284166162|ref|YP_003404441.1| - 0.072 12.9 0.0 0.16 11.8 0.0 1.6 1 0 0 1 1 1 0 TAP-like protein PGAP1 PF07819.8 gi|284166162|ref|YP_003404441.1| - 0.16 11.5 0.0 0.33 10.5 0.0 1.5 2 0 0 2 2 2 0 PGAP1-like protein DUF3530 PF12048.3 gi|284166162|ref|YP_003404441.1| - 0.16 10.9 0.0 0.25 10.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3530) HTH_32 PF13565.1 gi|284166163|ref|YP_003404442.1| - 2.2e-05 25.1 0.0 0.0054 17.4 0.0 2.3 2 0 0 2 2 2 2 Homeodomain-like domain HTH_24 PF13412.1 gi|284166163|ref|YP_003404442.1| - 4.6e-05 22.7 0.0 0.00013 21.2 0.0 1.7 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Tnp_Tc3_2 PF01498.13 gi|284166163|ref|YP_003404442.1| - 0.0012 18.9 0.0 0.0022 18.0 0.0 1.4 1 0 0 1 1 1 1 Transposase CAMSAP_CKK PF08683.6 gi|284166163|ref|YP_003404442.1| - 0.098 12.3 0.2 0.13 11.9 0.1 1.2 1 0 0 1 1 1 0 Microtubule-binding calmodulin-regulated spectrin-associated 4HBT PF03061.17 gi|284166164|ref|YP_003404443.1| - 1e-14 54.4 0.1 2.1e-14 53.3 0.0 1.5 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.1 gi|284166164|ref|YP_003404443.1| - 1.8e-09 37.6 0.0 3.9e-09 36.5 0.0 1.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.1 gi|284166164|ref|YP_003404443.1| - 0.00016 21.5 0.6 0.00016 21.5 0.4 1.8 2 1 0 2 2 2 1 Thioesterase-like superfamily DUF903 PF06004.7 gi|284166164|ref|YP_003404443.1| - 0.048 13.1 0.2 0.11 12.0 0.1 1.6 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF903) 3HCDH_N PF02737.13 gi|284166165|ref|YP_003404444.1| - 7.5e-65 217.9 0.0 1.1e-64 217.4 0.0 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH PF00378.15 gi|284166165|ref|YP_003404444.1| - 2.1e-56 190.7 0.0 2.9e-56 190.3 0.0 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family 3HCDH PF00725.17 gi|284166165|ref|YP_003404444.1| - 2e-44 149.8 0.7 7.2e-21 74.3 0.0 3.6 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|284166165|ref|YP_003404444.1| - 1e-05 25.3 0.0 1.7e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ECH_C PF13766.1 gi|284166165|ref|YP_003404444.1| - 1.2e-05 25.4 0.1 6.3e-05 23.0 0.0 2.1 2 0 0 2 2 2 1 2-enoyl-CoA Hydratase C-terminal region NAD_binding_2 PF03446.10 gi|284166165|ref|YP_003404444.1| - 0.00064 19.6 0.1 0.0015 18.3 0.1 1.7 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|284166165|ref|YP_003404444.1| - 0.0027 18.1 0.8 0.012 15.9 0.5 2.1 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.9 gi|284166165|ref|YP_003404444.1| - 0.0033 16.8 0.0 0.0054 16.1 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_3 PF03447.11 gi|284166165|ref|YP_003404444.1| - 0.011 16.1 0.1 0.024 15.0 0.1 1.6 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|284166165|ref|YP_003404444.1| - 0.12 12.6 0.0 0.25 11.6 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding APH PF01636.18 gi|284166166|ref|YP_003404445.1| - 1.1e-43 149.7 6.2 1.7e-43 149.1 4.3 1.3 1 0 0 1 1 1 1 Phosphotransferase enzyme family EcKinase PF02958.15 gi|284166166|ref|YP_003404445.1| - 0.0034 16.5 0.0 0.0052 15.9 0.0 1.2 1 0 0 1 1 1 1 Ecdysteroid kinase DUF1679 PF07914.6 gi|284166166|ref|YP_003404445.1| - 0.097 11.2 0.0 0.14 10.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1679) HAD_2 PF13419.1 gi|284166167|ref|YP_003404446.1| - 7.1e-31 107.7 0.0 8.9e-31 107.4 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|284166167|ref|YP_003404446.1| - 9.5e-12 44.4 0.1 1.8e-11 43.5 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|284166167|ref|YP_003404446.1| - 6.5e-09 36.5 0.1 1.1e-08 35.7 0.1 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|284166167|ref|YP_003404446.1| - 0.045 13.9 0.0 0.057 13.5 0.0 1.2 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase FMN_dh PF01070.13 gi|284166168|ref|YP_003404447.1| - 7.8e-130 432.8 0.0 9e-130 432.6 0.0 1.0 1 0 0 1 1 1 1 FMN-dependent dehydrogenase ThiG PF05690.9 gi|284166168|ref|YP_003404447.1| - 4.2e-06 26.0 0.0 0.005 15.9 0.0 2.3 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|284166168|ref|YP_003404447.1| - 0.00024 20.3 0.3 0.00037 19.7 0.2 1.2 1 0 0 1 1 1 1 Nitronate monooxygenase IMPDH PF00478.20 gi|284166168|ref|YP_003404447.1| - 0.00031 19.7 0.2 0.00055 18.9 0.1 1.5 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.12 gi|284166168|ref|YP_003404447.1| - 0.0044 15.9 0.0 0.0066 15.4 0.0 1.2 1 0 0 1 1 1 1 Conserved region in glutamate synthase TGT PF01702.13 gi|284166168|ref|YP_003404447.1| - 0.021 14.1 0.0 6.4 5.9 0.0 2.9 3 0 0 3 3 3 0 Queuine tRNA-ribosyltransferase His_biosynth PF00977.16 gi|284166168|ref|YP_003404447.1| - 0.05 12.8 0.0 1.1 8.4 0.0 2.6 2 1 0 3 3 3 0 Histidine biosynthesis protein adh_short PF00106.20 gi|284166169|ref|YP_003404448.1| - 1.1e-39 135.9 0.9 1.2e-39 135.9 0.2 1.3 2 0 0 2 2 2 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|284166169|ref|YP_003404448.1| - 1.2e-27 97.1 0.0 1.5e-27 96.9 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|284166169|ref|YP_003404448.1| - 1.3e-16 60.7 0.1 2e-16 60.1 0.1 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|284166169|ref|YP_003404448.1| - 3.8e-07 29.7 0.3 2.2e-06 27.2 0.2 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Saccharop_dh PF03435.13 gi|284166169|ref|YP_003404448.1| - 0.0005 19.1 0.1 0.00076 18.5 0.1 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_10 PF13460.1 gi|284166169|ref|YP_003404448.1| - 0.00076 19.5 0.7 0.0016 18.4 0.5 1.6 1 1 0 1 1 1 1 NADH(P)-binding F420_oxidored PF03807.12 gi|284166169|ref|YP_003404448.1| - 0.0016 18.7 0.1 0.0032 17.8 0.1 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.13 gi|284166169|ref|YP_003404448.1| - 0.0049 16.5 0.1 0.01 15.4 0.0 1.6 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3Beta_HSD PF01073.14 gi|284166169|ref|YP_003404448.1| - 0.0059 15.3 0.2 0.0082 14.8 0.1 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|284166169|ref|YP_003404448.1| - 0.015 14.1 0.2 0.03 13.2 0.1 1.5 1 1 0 1 1 1 0 RmlD substrate binding domain TrkA_N PF02254.13 gi|284166169|ref|YP_003404448.1| - 0.024 14.6 0.3 0.05 13.5 0.2 1.6 2 0 0 2 2 2 0 TrkA-N domain Polysacc_synt_2 PF02719.10 gi|284166169|ref|YP_003404448.1| - 0.031 13.1 0.1 0.05 12.4 0.0 1.4 1 1 0 1 1 1 0 Polysaccharide biosynthesis protein HHH_5 PF14520.1 gi|284166169|ref|YP_003404448.1| - 0.05 13.7 0.1 1.1 9.5 0.0 2.3 2 0 0 2 2 2 0 Helix-hairpin-helix domain THF_DHG_CYH_C PF02882.14 gi|284166169|ref|YP_003404448.1| - 0.095 11.7 0.2 0.39 9.7 0.0 1.9 2 0 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HATPase_c PF02518.21 gi|284166170|ref|YP_003404449.1| - 1e-29 102.5 0.0 1.9e-29 101.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|284166170|ref|YP_003404449.1| - 8.4e-12 44.9 0.2 8.4e-12 44.9 0.1 2.5 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.1 gi|284166170|ref|YP_003404449.1| - 2.1e-11 44.1 0.0 6.1e-11 42.6 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|284166170|ref|YP_003404449.1| - 1e-09 38.3 0.9 2.7e-09 37.0 0.0 2.2 3 0 0 3 3 3 1 PAS fold PAS PF00989.19 gi|284166170|ref|YP_003404449.1| - 1.7e-06 27.7 0.0 5.2e-06 26.2 0.0 1.9 1 1 0 1 1 1 1 PAS fold PAS_7 PF12860.2 gi|284166170|ref|YP_003404449.1| - 1.9e-06 27.8 0.0 4.1e-06 26.7 0.0 1.6 1 0 0 1 1 1 1 PAS fold HATPase_c_5 PF14501.1 gi|284166170|ref|YP_003404449.1| - 4.4e-06 26.3 0.0 7.9e-06 25.5 0.0 1.4 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.1 gi|284166170|ref|YP_003404449.1| - 0.00017 21.3 0.1 0.0004 20.1 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_3 PF08447.6 gi|284166170|ref|YP_003404449.1| - 0.00027 20.9 0.1 0.0023 17.9 0.0 2.5 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.1 gi|284166170|ref|YP_003404449.1| - 0.00097 18.9 0.2 0.0051 16.6 0.0 2.4 2 0 0 2 2 2 1 PAS domain HATPase_c_3 PF13589.1 gi|284166170|ref|YP_003404449.1| - 0.0036 16.9 0.0 0.0063 16.1 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Bac_luciferase PF00296.15 gi|284166171|ref|YP_003404450.1| - 4e-71 239.6 6.5 4.9e-71 239.3 4.5 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase TPR_7 PF13176.1 gi|284166171|ref|YP_003404450.1| - 0.15 11.9 1.1 12 5.9 0.0 3.3 2 1 1 3 3 3 0 Tetratricopeptide repeat TPR_14 PF13428.1 gi|284166171|ref|YP_003404450.1| - 0.83 10.4 4.2 41 5.1 0.0 3.7 2 1 1 3 3 3 0 Tetratricopeptide repeat TPR_4 PF07721.9 gi|284166171|ref|YP_003404450.1| - 3.7 8.2 13.2 14 6.4 0.1 4.1 3 0 0 3 3 3 0 Tetratricopeptide repeat AIRS_C PF02769.17 gi|284166172|ref|YP_003404451.1| - 4.5e-24 85.1 1.9 4.5e-24 85.1 1.3 1.6 2 0 0 2 2 2 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|284166172|ref|YP_003404451.1| - 4.4e-10 39.6 1.0 1.2e-09 38.2 0.7 1.7 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain HATPase_c PF02518.21 gi|284166174|ref|YP_003404453.1| - 2.7e-27 94.6 0.0 5.6e-27 93.6 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|284166174|ref|YP_003404453.1| - 5.5e-27 93.9 1.7 2.7e-16 59.5 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.1 gi|284166174|ref|YP_003404453.1| - 2.9e-20 72.5 0.1 3.9e-12 46.4 0.1 2.5 2 0 0 2 2 2 2 PAS domain PAS_8 PF13188.1 gi|284166174|ref|YP_003404453.1| - 2.1e-14 52.7 0.1 1.1e-09 37.8 0.0 3.1 2 0 0 2 2 2 2 PAS domain PAS PF00989.19 gi|284166174|ref|YP_003404453.1| - 4.1e-13 49.1 0.0 7.2e-08 32.2 0.0 2.7 2 0 0 2 2 2 2 PAS fold GAF PF01590.21 gi|284166174|ref|YP_003404453.1| - 8.2e-12 45.5 0.1 2.1e-11 44.1 0.1 1.8 1 0 0 1 1 1 1 GAF domain HisKA PF00512.20 gi|284166174|ref|YP_003404453.1| - 1e-11 44.6 2.5 3.1e-11 43.1 0.1 2.9 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.1 gi|284166174|ref|YP_003404453.1| - 4e-11 43.5 0.1 1.4e-10 41.8 0.1 2.0 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.1 gi|284166174|ref|YP_003404453.1| - 1.6e-07 31.4 0.6 3.1e-07 30.5 0.1 1.9 2 0 0 2 2 1 1 GAF domain HATPase_c_5 PF14501.1 gi|284166174|ref|YP_003404453.1| - 0.0053 16.4 0.0 0.012 15.2 0.0 1.6 1 0 0 1 1 1 1 GHKL domain DUF444 PF04285.7 gi|284166174|ref|YP_003404453.1| - 0.021 13.4 0.0 0.038 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF444) DUF3806 PF12713.2 gi|284166174|ref|YP_003404453.1| - 0.051 13.0 0.0 0.21 11.0 0.0 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3806) PAS_3 PF08447.6 gi|284166174|ref|YP_003404453.1| - 0.068 13.2 1.2 3.1 7.9 0.0 3.0 3 0 0 3 3 3 0 PAS fold DUF2088 PF09861.4 gi|284166175|ref|YP_003404454.1| - 9.7e-44 148.8 0.0 1.3e-43 148.4 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF2088) DUF362 PF04015.7 gi|284166175|ref|YP_003404454.1| - 0.00034 20.1 0.0 0.00057 19.4 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF362) PAP2 PF01569.16 gi|284166176|ref|YP_003404455.1| - 7.7e-19 67.6 3.2 7.7e-19 67.6 2.3 2.5 3 1 0 3 3 3 1 PAP2 superfamily PAP2_3 PF14378.1 gi|284166176|ref|YP_003404455.1| - 0.00075 19.0 9.4 0.00075 19.0 6.5 2.3 2 1 0 2 2 2 1 PAP2 superfamily PAP2_C PF14360.1 gi|284166176|ref|YP_003404455.1| - 0.042 14.1 1.5 0.23 11.7 0.1 2.4 2 0 0 2 2 2 0 PAP2 superfamily C-terminal Bac_export_3 PF01313.14 gi|284166176|ref|YP_003404455.1| - 0.23 11.1 0.2 0.23 11.1 0.1 3.0 4 1 0 4 4 4 0 Bacterial export proteins, family 3 HTH_10 PF04967.7 gi|284166177|ref|YP_003404456.1| - 3.8e-18 64.8 0.0 7.2e-18 63.9 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|284166177|ref|YP_003404456.1| - 1.3e-05 24.7 0.1 2.6e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|284166177|ref|YP_003404456.1| - 0.00022 20.5 0.0 0.0004 19.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GntR PF00392.16 gi|284166177|ref|YP_003404456.1| - 0.00035 19.9 0.1 0.00075 18.8 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_AsnC-type PF13404.1 gi|284166177|ref|YP_003404456.1| - 0.002 17.6 0.1 0.0051 16.3 0.0 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain UPF0122 PF04297.9 gi|284166177|ref|YP_003404456.1| - 0.0049 16.8 0.0 0.0075 16.2 0.0 1.2 1 0 0 1 1 1 1 Putative helix-turn-helix protein, YlxM / p13 like HTH_11 PF08279.7 gi|284166177|ref|YP_003404456.1| - 0.0074 15.9 0.1 0.024 14.2 0.0 1.8 1 1 1 2 2 2 1 HTH domain Sigma70_r4 PF04545.11 gi|284166177|ref|YP_003404456.1| - 0.0086 15.3 0.1 0.023 14.0 0.1 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.7 gi|284166177|ref|YP_003404456.1| - 0.011 15.1 0.0 0.029 13.8 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_20 PF12840.2 gi|284166177|ref|YP_003404456.1| - 0.033 13.9 0.0 0.11 12.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_28 PF13518.1 gi|284166177|ref|YP_003404456.1| - 0.045 13.7 0.0 0.35 10.9 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain Phage_CI_repr PF07022.8 gi|284166177|ref|YP_003404456.1| - 0.049 13.7 0.0 0.17 12.0 0.0 1.9 1 1 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain Sigma70_r3 PF04539.11 gi|284166177|ref|YP_003404456.1| - 0.091 12.6 0.1 0.23 11.3 0.1 1.7 1 0 0 1 1 1 0 Sigma-70 region 3 HTH_Tnp_ISL3 PF13542.1 gi|284166177|ref|YP_003404456.1| - 0.11 11.7 0.0 0.55 9.4 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 HTH_23 PF13384.1 gi|284166177|ref|YP_003404456.1| - 0.12 12.0 0.1 0.4 10.4 0.0 1.9 2 0 0 2 2 1 0 Homeodomain-like domain HTH_psq PF05225.11 gi|284166177|ref|YP_003404456.1| - 0.19 11.2 1.6 0.21 11.1 0.0 1.9 2 1 0 2 2 1 0 helix-turn-helix, Psq domain AAA_11 PF13086.1 gi|284166179|ref|YP_003404458.1| - 2e-39 135.5 0.0 9.8e-19 67.8 0.0 3.1 2 1 1 3 3 3 2 AAA domain AAA_12 PF13087.1 gi|284166179|ref|YP_003404458.1| - 2.4e-39 134.8 0.0 3.5e-39 134.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain Dna2 PF08696.6 gi|284166179|ref|YP_003404458.1| - 1.1e-31 109.8 0.0 5.6e-31 107.4 0.0 1.9 1 1 0 1 1 1 1 DNA replication factor Dna2 PDDEXK_1 PF12705.2 gi|284166179|ref|YP_003404458.1| - 1.7e-17 63.7 0.2 7.8e-17 61.4 0.0 2.2 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily AAA_30 PF13604.1 gi|284166179|ref|YP_003404458.1| - 2.8e-16 59.7 3.3 1.3e-15 57.4 0.8 2.9 2 1 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|284166179|ref|YP_003404458.1| - 2.2e-14 52.9 2.9 4.4e-13 48.7 0.2 3.0 3 0 0 3 3 3 1 Part of AAA domain Viral_helicase1 PF01443.13 gi|284166179|ref|YP_003404458.1| - 1.2e-05 24.9 0.0 0.058 12.8 0.0 3.2 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase Cas_Cas4 PF01930.12 gi|284166179|ref|YP_003404458.1| - 1.4e-05 25.0 0.1 6.4e-05 22.9 0.0 2.1 2 1 0 2 2 2 1 Domain of unknown function DUF83 Helicase_RecD PF05127.9 gi|284166179|ref|YP_003404458.1| - 1.4e-05 24.8 0.1 7.8e-05 22.3 0.0 2.2 2 0 0 2 2 2 1 Helicase UvrD-helicase PF00580.16 gi|284166179|ref|YP_003404458.1| - 3.5e-05 23.2 0.0 7e-05 22.2 0.0 1.5 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain AAA_22 PF13401.1 gi|284166179|ref|YP_003404458.1| - 0.00013 22.0 0.0 0.00042 20.4 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|284166179|ref|YP_003404458.1| - 0.00017 21.6 0.4 0.00074 19.5 0.2 2.2 1 1 0 1 1 1 1 AAA ATPase domain ResIII PF04851.10 gi|284166179|ref|YP_003404458.1| - 0.0011 18.8 0.0 0.0022 17.8 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit PhoH PF02562.11 gi|284166179|ref|YP_003404458.1| - 0.0042 16.3 0.0 0.027 13.6 0.0 2.2 1 1 0 1 1 1 1 PhoH-like protein AAA PF00004.24 gi|284166179|ref|YP_003404458.1| - 0.0074 16.4 0.5 0.044 13.9 0.4 2.2 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) DEAD PF00270.24 gi|284166179|ref|YP_003404458.1| - 0.018 14.5 0.0 0.037 13.5 0.0 1.5 1 0 0 1 1 1 0 DEAD/DEAH box helicase DUF2075 PF09848.4 gi|284166179|ref|YP_003404458.1| - 0.019 13.9 0.0 0.037 12.9 0.0 1.4 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) T2SE PF00437.15 gi|284166179|ref|YP_003404458.1| - 0.03 13.2 0.0 0.062 12.2 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein UvrD_C_2 PF13538.1 gi|284166179|ref|YP_003404458.1| - 0.037 14.1 0.0 0.12 12.5 0.0 2.0 1 0 0 1 1 1 0 UvrD-like helicase C-terminal domain SRP54 PF00448.17 gi|284166179|ref|YP_003404458.1| - 0.047 13.1 0.0 0.23 10.8 0.0 2.2 3 0 0 3 3 3 0 SRP54-type protein, GTPase domain AAA_10 PF12846.2 gi|284166179|ref|YP_003404458.1| - 0.061 12.7 0.0 0.31 10.4 0.0 2.1 1 1 0 1 1 1 0 AAA-like domain Mg_chelatase PF01078.16 gi|284166179|ref|YP_003404458.1| - 0.069 12.2 0.0 0.12 11.4 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI TrwB_AAD_bind PF10412.4 gi|284166179|ref|YP_003404458.1| - 0.077 11.6 0.0 0.13 10.9 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_5 PF07728.9 gi|284166179|ref|YP_003404458.1| - 0.08 12.6 0.0 0.24 11.1 0.0 2.0 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.1 gi|284166179|ref|YP_003404458.1| - 0.13 11.6 0.0 0.13 11.6 0.0 2.6 3 0 0 3 3 2 0 AAA domain DUF4350 PF14258.1 gi|284166179|ref|YP_003404458.1| - 0.15 12.3 4.6 47 4.2 0.0 5.0 6 0 0 6 6 4 0 Domain of unknown function (DUF4350) PIF1 PF05970.9 gi|284166179|ref|YP_003404458.1| - 0.2 10.5 0.0 4 6.2 0.0 2.1 2 0 0 2 2 2 0 PIF1-like helicase SPW PF03779.9 gi|284166180|ref|YP_003404459.1| - 1.1e-05 24.6 19.0 0.00034 19.9 2.9 2.3 2 0 0 2 2 2 2 SPW repeat PT-VENN PF04829.8 gi|284166180|ref|YP_003404459.1| - 0.057 12.9 3.0 1.2 8.6 0.4 2.5 2 0 0 2 2 2 0 Pre-toxin domain with VENN motif PGPGW PF09656.5 gi|284166181|ref|YP_003404460.1| - 0.0033 16.7 0.0 0.0057 15.9 0.0 1.4 1 0 0 1 1 1 1 Putative transmembrane protein (PGPGW) Tad PF13400.1 gi|284166181|ref|YP_003404460.1| - 0.033 14.2 2.0 0.039 13.9 0.1 1.9 2 0 0 2 2 2 0 Putative Flp pilus-assembly TadE/G-like DUF503 PF04456.7 gi|284166181|ref|YP_003404460.1| - 0.047 13.2 0.0 0.081 12.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF503) DUF202 PF02656.10 gi|284166181|ref|YP_003404460.1| - 0.3 11.3 1.3 0.38 10.9 0.9 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF202) HHH_2 PF12826.2 gi|284166182|ref|YP_003404461.1| - 0.007 16.2 0.7 0.17 11.8 0.3 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix motif DUF3225 PF11533.3 gi|284166183|ref|YP_003404462.1| - 2.2e-06 27.3 0.6 4.7e-06 26.2 0.4 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF3225) SnoaL_3 PF13474.1 gi|284166183|ref|YP_003404462.1| - 7e-05 22.8 2.9 7.7e-05 22.7 1.4 1.5 2 0 0 2 2 2 1 SnoaL-like domain NTF2 PF02136.15 gi|284166183|ref|YP_003404462.1| - 0.031 14.6 0.0 0.04 14.3 0.0 1.2 1 0 0 1 1 1 0 Nuclear transport factor 2 (NTF2) domain DUF4440 PF14534.1 gi|284166183|ref|YP_003404462.1| - 0.099 12.8 2.1 0.14 12.3 1.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4440) SnoaL_2 PF12680.2 gi|284166183|ref|YP_003404462.1| - 0.22 11.9 4.3 0.44 10.9 2.6 1.8 1 1 0 1 1 1 0 SnoaL-like domain DUF2342 PF10103.4 gi|284166185|ref|YP_003404464.1| - 3.1e-81 272.9 3.0 1.2e-44 152.7 0.1 2.0 1 1 1 2 2 2 2 Uncharacterised conserved protein (DUF2342) Peptidase_MA_2 PF13485.1 gi|284166185|ref|YP_003404464.1| - 0.013 15.5 1.9 0.084 12.9 1.3 2.2 1 1 0 1 1 1 0 Peptidase MA superfamily LSM PF01423.17 gi|284166187|ref|YP_003404466.1| - 2.3e-18 65.5 0.0 2.6e-18 65.3 0.0 1.1 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|284166187|ref|YP_003404466.1| - 3.6e-06 26.8 0.0 4.4e-06 26.5 0.0 1.1 1 0 0 1 1 1 1 Ataxin 2 SM domain Ribosomal_L37e PF01907.14 gi|284166188|ref|YP_003404467.1| - 2.8e-25 87.8 14.2 3e-25 87.7 9.9 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|284166188|ref|YP_003404467.1| - 0.0078 16.0 4.0 0.01 15.6 2.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|284166188|ref|YP_003404467.1| - 0.021 14.0 3.4 1 8.6 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-RanBP PF00641.13 gi|284166188|ref|YP_003404467.1| - 0.024 13.7 2.9 0.38 9.9 0.1 2.2 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others OrfB_Zn_ribbon PF07282.6 gi|284166188|ref|YP_003404467.1| - 0.029 14.0 4.8 0.036 13.7 3.3 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain HypA PF01155.14 gi|284166188|ref|YP_003404467.1| - 0.14 11.8 2.6 0.16 11.6 1.8 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF35_N PF12172.3 gi|284166188|ref|YP_003404467.1| - 0.14 12.0 1.1 0.19 11.7 0.7 1.3 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn_Tnp_IS91 PF14319.1 gi|284166188|ref|YP_003404467.1| - 0.15 11.5 2.8 0.16 11.4 1.9 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain DUF1258 PF06869.7 gi|284166188|ref|YP_003404467.1| - 0.4 9.7 2.3 0.47 9.4 1.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1258) zinc_ribbon_2 PF13240.1 gi|284166188|ref|YP_003404467.1| - 0.56 9.7 6.5 1.6 8.3 0.3 2.2 1 1 1 2 2 2 0 zinc-ribbon domain zf-C3HC4 PF00097.20 gi|284166188|ref|YP_003404467.1| - 0.7 9.5 4.6 0.89 9.2 3.2 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) RNA_POL_M_15KD PF02150.11 gi|284166188|ref|YP_003404467.1| - 0.99 9.1 5.9 4.2 7.1 0.5 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit GFA PF04828.9 gi|284166188|ref|YP_003404467.1| - 1 9.3 5.5 2.3 8.2 3.8 1.7 1 1 0 1 1 1 0 Glutathione-dependent formaldehyde-activating enzyme zf-C2H2_3 PF13878.1 gi|284166188|ref|YP_003404467.1| - 3.8 7.1 10.2 7.6 6.1 1.4 2.2 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO YhfH PF14149.1 gi|284166188|ref|YP_003404467.1| - 6.8 6.5 8.9 4.3 7.1 0.8 2.2 1 1 1 2 2 2 0 YhfH-like protein DUF4013 PF13197.1 gi|284166189|ref|YP_003404468.1| - 2.2e-34 118.2 13.4 2.2e-34 118.2 9.3 1.5 1 1 1 2 2 2 1 Protein of unknown function (DUF4013) EI24 PF07264.6 gi|284166189|ref|YP_003404468.1| - 3.7 6.9 17.1 40 3.5 11.9 2.6 1 1 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) DUF4112 PF13430.1 gi|284166189|ref|YP_003404468.1| - 4.1 7.3 6.1 0.35 10.8 0.3 2.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4112) DUF3154 PF11351.3 gi|284166189|ref|YP_003404468.1| - 4.5 7.0 6.6 1.3 8.7 1.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3154) PALP PF00291.20 gi|284166190|ref|YP_003404469.1| - 7.6e-49 166.5 0.4 8.8e-49 166.3 0.3 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme HypA PF01155.14 gi|284166190|ref|YP_003404469.1| - 0.13 11.9 0.3 0.24 11.1 0.2 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family TF_Zn_Ribbon PF08271.7 gi|284166190|ref|YP_003404469.1| - 0.15 11.4 1.4 0.37 10.1 1.0 1.7 1 0 0 1 1 1 0 TFIIB zinc-binding DUF502 PF04367.8 gi|284166191|ref|YP_003404470.1| - 4.6e-19 68.1 0.2 8.4e-19 67.3 0.2 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF502) Pro_dh PF01619.13 gi|284166192|ref|YP_003404471.1| - 2.5e-36 125.2 0.0 6.3e-36 123.9 0.0 1.6 1 1 0 1 1 1 1 Proline dehydrogenase PucR PF07905.6 gi|284166192|ref|YP_003404471.1| - 0.012 15.1 0.4 1 8.9 0.0 2.9 1 1 2 3 3 3 0 Purine catabolism regulatory protein-like family Bac_luciferase PF00296.15 gi|284166192|ref|YP_003404471.1| - 0.1 11.6 3.5 0.098 11.7 1.6 1.6 2 0 0 2 2 2 0 Luciferase-like monooxygenase Aminotran_3 PF00202.16 gi|284166193|ref|YP_003404472.1| - 5e-90 301.7 0.0 6.2e-90 301.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Ribonuc_L-PSP PF01042.16 gi|284166194|ref|YP_003404473.1| - 7.7e-36 122.5 0.0 8.5e-36 122.3 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP GGDEF PF00990.16 gi|284166194|ref|YP_003404473.1| - 0.014 15.0 0.0 0.028 13.9 0.0 1.4 1 1 0 1 1 1 0 GGDEF domain Peptidase_M20 PF01546.23 gi|284166195|ref|YP_003404474.1| - 4.4e-21 75.2 13.6 1.4e-20 73.5 9.4 1.8 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|284166195|ref|YP_003404474.1| - 2.7e-11 43.1 0.5 9.6e-11 41.4 0.3 2.0 2 0 0 2 2 2 1 Peptidase dimerisation domain Sdh5 PF03937.11 gi|284166196|ref|YP_003404475.1| - 0.04 13.6 0.1 0.098 12.3 0.1 1.7 1 0 0 1 1 1 0 Flavinator of succinate dehydrogenase Phage_int_SAM_4 PF13495.1 gi|284166196|ref|YP_003404475.1| - 0.044 14.0 0.0 1.2 9.5 0.0 2.6 3 0 0 3 3 3 0 Phage integrase, N-terminal SAM-like domain BCCT PF02028.12 gi|284166197|ref|YP_003404476.1| - 1.2e-150 501.9 53.5 1.4e-150 501.7 37.1 1.0 1 0 0 1 1 1 1 BCCT family transporter Aminotran_3 PF00202.16 gi|284166198|ref|YP_003404477.1| - 1.2e-63 215.0 0.0 3.8e-63 213.4 0.0 1.7 1 1 0 1 1 1 1 Aminotransferase class-III HATPase_c PF02518.21 gi|284166199|ref|YP_003404478.1| - 4.6e-29 100.3 0.0 9.7e-29 99.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|284166199|ref|YP_003404478.1| - 6.3e-16 58.6 0.1 6.2e-08 32.9 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.5 gi|284166199|ref|YP_003404478.1| - 3.1e-15 56.1 4.8 1e-11 44.7 0.2 3.0 3 0 0 3 3 3 2 PAS fold GAF PF01590.21 gi|284166199|ref|YP_003404478.1| - 1.7e-11 44.4 0.1 3.6e-11 43.3 0.0 1.6 1 0 0 1 1 1 1 GAF domain HisKA PF00512.20 gi|284166199|ref|YP_003404478.1| - 3.4e-11 42.9 3.1 2.2e-10 40.3 0.0 3.3 2 1 1 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_3 PF08447.6 gi|284166199|ref|YP_003404478.1| - 1.7e-10 40.8 0.1 4.7e-09 36.2 0.0 2.5 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.1 gi|284166199|ref|YP_003404478.1| - 2.6e-09 36.5 0.0 1.3e-07 31.1 0.0 3.4 2 0 0 2 2 2 1 PAS domain GAF_3 PF13492.1 gi|284166199|ref|YP_003404478.1| - 6.4e-06 26.2 0.1 2e-05 24.6 0.0 1.9 1 0 0 1 1 1 1 GAF domain GAF_2 PF13185.1 gi|284166199|ref|YP_003404478.1| - 6.5e-06 26.7 0.2 7.5e-05 23.2 0.0 2.7 2 1 1 3 3 3 1 GAF domain HATPase_c_5 PF14501.1 gi|284166199|ref|YP_003404478.1| - 9.5e-06 25.2 0.0 7.5e-05 22.3 0.0 2.2 2 0 0 2 2 2 1 GHKL domain PAS_7 PF12860.2 gi|284166199|ref|YP_003404478.1| - 0.0016 18.4 0.4 2.5 8.1 0.0 3.4 2 1 0 2 2 2 2 PAS fold DUF1543 PF07566.7 gi|284166199|ref|YP_003404478.1| - 0.064 12.7 0.0 8.7 5.9 0.0 2.6 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1543) HATPase_c_3 PF13589.1 gi|284166199|ref|YP_003404478.1| - 0.068 12.8 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF2762 PF10960.3 gi|284166199|ref|YP_003404478.1| - 0.3 10.8 6.0 1.5 8.5 0.3 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF2762) PALP PF00291.20 gi|284166200|ref|YP_003404479.1| - 2.3e-76 256.9 8.4 3.1e-76 256.5 5.8 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACC_epsilon PF13822.1 gi|284166200|ref|YP_003404479.1| - 0.41 11.0 5.4 1.1 9.6 3.8 1.7 1 0 0 1 1 1 0 Acyl-CoA carboxylase epsilon subunit Peptidase_M20 PF01546.23 gi|284166201|ref|YP_003404480.1| - 3.1e-21 75.7 4.4 5.4e-21 74.9 3.1 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|284166201|ref|YP_003404480.1| - 2.3e-11 43.4 0.5 5.4e-11 42.2 0.4 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain 2-Hacid_dh_C PF02826.14 gi|284166202|ref|YP_003404481.1| - 2.4e-54 183.1 0.0 3.8e-54 182.5 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|284166202|ref|YP_003404481.1| - 2e-14 53.1 0.0 2.5e-14 52.8 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain F420_oxidored PF03807.12 gi|284166202|ref|YP_003404481.1| - 0.00096 19.5 0.0 0.0068 16.8 0.0 2.1 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|284166202|ref|YP_003404481.1| - 0.005 16.6 0.0 0.0092 15.8 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|284166202|ref|YP_003404481.1| - 0.0072 15.7 0.0 0.013 14.8 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_Gly3P_dh_N PF01210.18 gi|284166202|ref|YP_003404481.1| - 0.012 15.3 0.2 0.97 9.1 0.1 3.0 2 1 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TrkA_N PF02254.13 gi|284166202|ref|YP_003404481.1| - 0.016 15.1 0.1 1.1 9.2 0.0 3.0 3 0 0 3 3 3 0 TrkA-N domain ThiF PF00899.16 gi|284166202|ref|YP_003404481.1| - 0.056 13.2 1.2 0.24 11.2 0.1 2.2 2 0 0 2 2 2 0 ThiF family FAD-oxidase_C PF02913.14 gi|284166203|ref|YP_003404482.1| - 3.6e-60 203.3 0.5 6.6e-60 202.4 0.1 1.7 2 0 0 2 2 2 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|284166203|ref|YP_003404482.1| - 4.4e-41 139.6 2.1 1e-40 138.4 1.4 1.7 1 0 0 1 1 1 1 FAD binding domain Fer4_17 PF13534.1 gi|284166203|ref|YP_003404482.1| - 1.7e-08 34.6 5.0 3.4e-08 33.7 3.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.11 gi|284166203|ref|YP_003404482.1| - 2.7e-08 33.7 0.0 2.3e-05 24.2 0.0 2.7 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|284166203|ref|YP_003404482.1| - 2.5e-07 30.6 5.7 5e-07 29.6 4.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|284166203|ref|YP_003404482.1| - 0.00076 19.8 3.8 0.00092 19.5 0.3 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|284166203|ref|YP_003404482.1| - 0.0041 17.3 2.8 0.071 13.3 0.1 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|284166203|ref|YP_003404482.1| - 0.0071 16.1 3.9 0.064 13.1 0.3 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Cytokin-bind PF09265.5 gi|284166203|ref|YP_003404482.1| - 0.05 12.7 0.0 0.091 11.8 0.0 1.4 1 0 0 1 1 1 0 Cytokinin dehydrogenase 1, FAD and cytokinin binding Fer4_16 PF13484.1 gi|284166203|ref|YP_003404482.1| - 0.078 13.7 1.0 0.58 10.9 0.1 2.4 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|284166203|ref|YP_003404482.1| - 0.22 11.3 9.1 0.54 10.1 1.5 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|284166203|ref|YP_003404482.1| - 0.43 10.2 14.0 0.26 10.9 3.0 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_7 PF12838.2 gi|284166203|ref|YP_003404482.1| - 0.57 10.6 8.4 2.7 8.4 1.8 2.5 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|284166203|ref|YP_003404482.1| - 1 9.4 8.1 1.8 8.6 1.1 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain ELFV_dehydrog PF00208.16 gi|284166205|ref|YP_003404484.1| - 2.9e-69 233.3 0.1 4e-69 232.8 0.1 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|284166205|ref|YP_003404484.1| - 5e-51 171.6 0.0 8e-51 171.0 0.0 1.3 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|284166205|ref|YP_003404484.1| - 0.00055 19.1 0.0 0.00093 18.3 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|284166205|ref|YP_003404484.1| - 0.1 11.9 0.0 0.18 11.1 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain Rad33 PF08730.5 gi|284166205|ref|YP_003404484.1| - 0.31 10.4 0.7 0.85 9.0 0.0 2.0 3 0 0 3 3 3 0 Rad33 Peptidase_M24 PF00557.19 gi|284166206|ref|YP_003404485.1| - 5.7e-36 124.0 0.1 8.3e-36 123.5 0.0 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|284166206|ref|YP_003404485.1| - 6e-23 81.7 0.0 1.2e-22 80.7 0.0 1.5 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain DUF46 PF01864.12 gi|284166207|ref|YP_003404486.1| - 1.7e-47 161.5 1.4 2e-47 161.2 0.9 1.0 1 0 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|284166207|ref|YP_003404486.1| - 1.2e-07 31.6 0.2 1.2e-07 31.6 0.2 1.8 1 1 0 1 1 1 1 Cytidylyltransferase family Gly-zipper_YMGG PF13441.1 gi|284166207|ref|YP_003404486.1| - 2 8.0 10.9 0.77 9.3 0.3 2.5 2 0 0 2 2 2 0 YMGG-like Gly-zipper DUF457 PF04307.9 gi|284166207|ref|YP_003404486.1| - 2.5 7.3 6.4 6.6 6.0 4.4 1.7 1 1 0 1 1 1 0 Predicted membrane-bound metal-dependent hydrolase (DUF457) NTP_transferase PF00483.18 gi|284166208|ref|YP_003404487.1| - 4.1e-43 147.4 0.0 4.6e-43 147.2 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|284166208|ref|YP_003404487.1| - 1.1e-14 54.7 0.0 1.3e-14 54.5 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|284166208|ref|YP_003404487.1| - 3.7e-06 26.6 0.0 2.6e-05 23.8 0.0 2.0 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.21 gi|284166208|ref|YP_003404487.1| - 0.014 15.1 0.1 0.018 14.7 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase family 2 Polysacc_synt PF01943.12 gi|284166209|ref|YP_003404488.1| - 9.5e-22 77.5 18.6 9.5e-22 77.5 12.9 2.2 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|284166209|ref|YP_003404488.1| - 3.5e-18 65.9 22.2 3.5e-18 65.9 15.4 2.9 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|284166209|ref|YP_003404488.1| - 9.1e-18 64.4 18.1 9.1e-18 64.4 12.5 4.1 3 1 1 4 4 4 1 Polysaccharide biosynthesis C-terminal domain MVIN PF03023.9 gi|284166209|ref|YP_003404488.1| - 6.3e-10 38.0 21.9 1.1e-09 37.2 15.2 1.5 1 0 0 1 1 1 1 MviN-like protein Sulfatase PF00884.18 gi|284166210|ref|YP_003404489.1| - 0.0035 16.5 0.1 0.0055 15.9 0.1 1.3 1 0 0 1 1 1 1 Sulfatase DUF563 PF04577.9 gi|284166211|ref|YP_003404490.1| - 3.5e-42 144.6 0.0 4.7e-42 144.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF563) Metalloenzyme PF01676.13 gi|284166212|ref|YP_003404491.1| - 0.0003 20.2 0.0 0.00048 19.5 0.0 1.3 1 0 0 1 1 1 1 Metalloenzyme superfamily Methyltransf_21 PF05050.7 gi|284166215|ref|YP_003404494.1| - 3.2e-26 92.2 0.0 4.8e-26 91.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase FkbM domain V_cholerae_RfbT PF05575.6 gi|284166215|ref|YP_003404494.1| - 7.8e-07 28.4 0.0 2.2e-06 26.9 0.0 1.7 1 1 0 1 1 1 1 Vibrio cholerae RfbT protein Met_10 PF02475.11 gi|284166215|ref|YP_003404494.1| - 1.2e-05 25.0 0.1 5.9e-05 22.7 0.0 1.8 2 0 0 2 2 2 1 Met-10+ like-protein Methyltransf_18 PF12847.2 gi|284166215|ref|YP_003404494.1| - 0.0011 19.4 0.0 0.0018 18.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|284166215|ref|YP_003404494.1| - 0.095 11.8 0.1 0.13 11.3 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Glycos_transf_1 PF00534.15 gi|284166216|ref|YP_003404495.1| - 2e-35 121.7 0.0 3e-35 121.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|284166216|ref|YP_003404495.1| - 5.5e-21 75.1 0.3 2.7e-20 72.9 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|284166216|ref|YP_003404495.1| - 8.4e-12 45.5 2.3 8.4e-12 45.5 1.6 2.4 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|284166216|ref|YP_003404495.1| - 5.7e-06 26.5 0.0 1.8e-05 24.9 0.0 1.9 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|284166217|ref|YP_003404496.1| - 1e-20 73.8 0.0 1.6e-20 73.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|284166217|ref|YP_003404496.1| - 9.1e-11 42.0 0.0 2.1e-10 40.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|284166217|ref|YP_003404496.1| - 1e-08 35.1 0.4 1.7e-08 34.3 0.2 1.5 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|284166217|ref|YP_003404496.1| - 0.025 14.7 1.8 0.058 13.5 1.2 1.8 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain Glycos_transf_2 PF00535.21 gi|284166218|ref|YP_003404497.1| - 1.9e-26 92.7 0.1 2.8e-26 92.2 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|284166218|ref|YP_003404497.1| - 1.2e-16 61.2 0.4 1.5e-16 60.8 0.3 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|284166218|ref|YP_003404497.1| - 3.7e-09 36.0 0.1 3.3e-08 32.9 0.1 2.0 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|284166218|ref|YP_003404497.1| - 0.0011 18.7 0.4 0.0021 17.8 0.3 1.6 1 0 0 1 1 1 1 Glycosyl transferase family group 2 STT3 PF02516.9 gi|284166219|ref|YP_003404498.1| - 1.1e-22 80.7 25.2 3.7e-22 78.9 15.9 2.1 2 0 0 2 2 2 1 Oligosaccharyl transferase STT3 subunit OppC_N PF12911.2 gi|284166219|ref|YP_003404498.1| - 0.032 13.5 0.4 0.032 13.5 0.3 2.7 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C DUF998 PF06197.8 gi|284166219|ref|YP_003404498.1| - 4.4 6.5 42.8 0.11 11.7 9.6 3.5 2 1 1 3 3 3 0 Protein of unknown function (DUF998) DUF368 PF04018.8 gi|284166220|ref|YP_003404499.1| - 5.5e-71 238.7 12.9 6.7e-71 238.4 8.9 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF368) AAA_16 PF13191.1 gi|284166221|ref|YP_003404500.1| - 6.1e-08 32.8 9.2 2.1e-06 27.8 6.4 2.7 1 1 0 1 1 1 1 AAA ATPase domain HTH_IclR PF09339.5 gi|284166221|ref|YP_003404500.1| - 0.00052 19.5 0.0 0.0017 17.9 0.0 1.9 1 0 0 1 1 1 1 IclR helix-turn-helix domain AAA_22 PF13401.1 gi|284166221|ref|YP_003404500.1| - 0.0024 18.0 0.0 0.0055 16.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain Guanylate_kin PF00625.16 gi|284166221|ref|YP_003404500.1| - 0.0083 15.5 0.0 0.02 14.3 0.0 1.6 2 0 0 2 2 2 1 Guanylate kinase HTH_24 PF13412.1 gi|284166221|ref|YP_003404500.1| - 0.027 13.8 0.0 0.061 12.7 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|284166221|ref|YP_003404500.1| - 0.08 12.6 0.0 0.2 11.3 0.0 1.6 1 0 0 1 1 1 0 MarR family TrmB PF01978.14 gi|284166221|ref|YP_003404500.1| - 0.16 11.7 0.0 0.3 10.8 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB CCG PF02754.11 gi|284166222|ref|YP_003404501.1| - 1.1e-23 83.0 1.9 2.2e-12 46.7 0.0 2.8 3 0 0 3 3 3 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|284166222|ref|YP_003404501.1| - 5.7e-07 29.4 8.4 5.7e-07 29.4 5.8 2.7 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|284166222|ref|YP_003404501.1| - 2.6e-05 24.4 10.3 2.6e-05 24.4 7.1 3.2 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|284166222|ref|YP_003404501.1| - 4.8e-05 23.6 7.3 0.043 14.2 0.3 3.7 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|284166222|ref|YP_003404501.1| - 0.00036 20.7 16.3 0.0015 18.7 9.0 3.2 3 1 1 4 4 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|284166222|ref|YP_003404501.1| - 0.0069 16.1 14.3 0.0069 16.1 9.9 3.0 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|284166222|ref|YP_003404501.1| - 0.0075 16.6 13.3 0.0075 16.6 9.2 2.5 3 1 1 4 4 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|284166222|ref|YP_003404501.1| - 0.025 14.4 11.8 0.094 12.5 0.5 3.1 4 0 0 4 4 3 0 4Fe-4S dicluster domain zf-C2H2_3 PF13878.1 gi|284166222|ref|YP_003404501.1| - 0.073 12.6 0.2 0.073 12.6 0.1 3.8 4 0 0 4 4 4 0 zinc-finger of acetyl-transferase ESCO Fer4_16 PF13484.1 gi|284166222|ref|YP_003404501.1| - 0.082 13.6 16.6 0.079 13.7 8.6 3.1 3 1 1 4 4 3 0 4Fe-4S double cluster binding domain DUF3390 PF11870.3 gi|284166222|ref|YP_003404501.1| - 0.083 12.8 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3390) zf-CSL PF05207.8 gi|284166222|ref|YP_003404501.1| - 0.32 10.5 0.0 0.32 10.5 0.0 4.0 4 1 0 4 4 3 0 CSL zinc finger Fer4 PF00037.22 gi|284166222|ref|YP_003404501.1| - 0.51 10.0 13.8 0.21 11.2 1.7 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain FAD_binding_2 PF00890.19 gi|284166223|ref|YP_003404502.1| - 1.5e-37 129.4 4.4 1.9e-37 129.1 3.1 1.1 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|284166223|ref|YP_003404502.1| - 1.7e-08 33.7 1.2 0.00044 19.2 0.5 2.4 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|284166223|ref|YP_003404502.1| - 4.5e-06 26.6 0.3 0.004 17.0 0.4 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|284166223|ref|YP_003404502.1| - 2.4e-05 23.3 1.7 4.8e-05 22.4 0.8 1.8 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|284166223|ref|YP_003404502.1| - 6.1e-05 22.2 5.0 0.00024 20.3 2.6 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|284166223|ref|YP_003404502.1| - 0.0027 16.8 1.1 0.033 13.2 0.3 2.6 3 0 0 3 3 3 1 FAD binding domain HI0933_like PF03486.9 gi|284166223|ref|YP_003404502.1| - 0.0035 15.8 0.2 0.021 13.3 0.2 2.1 2 0 0 2 2 2 1 HI0933-like protein Lycopene_cycl PF05834.7 gi|284166223|ref|YP_003404502.1| - 0.008 15.1 0.4 0.008 15.1 0.2 1.6 2 0 0 2 2 2 1 Lycopene cyclase protein Pyr_redox PF00070.22 gi|284166223|ref|YP_003404502.1| - 0.0084 16.4 0.1 0.13 12.6 0.1 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|284166223|ref|YP_003404502.1| - 0.015 15.3 2.2 0.037 14.0 1.6 1.7 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.9 gi|284166223|ref|YP_003404502.1| - 0.08 11.5 0.2 0.13 10.8 0.1 1.3 1 0 0 1 1 1 0 Tryptophan halogenase 3HCDH_N PF02737.13 gi|284166223|ref|YP_003404502.1| - 0.17 11.5 0.4 0.28 10.8 0.3 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DAO PF01266.19 gi|284166224|ref|YP_003404503.1| - 6.2e-61 206.2 2.0 8.3e-61 205.8 1.4 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|284166224|ref|YP_003404503.1| - 1.6e-08 34.7 0.2 0.0018 18.2 0.1 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Fer2_BFD PF04324.10 gi|284166224|ref|YP_003404503.1| - 1.8e-08 34.2 2.6 1.8e-08 34.2 1.8 2.7 3 0 0 3 3 3 1 BFD-like [2Fe-2S] binding domain FAD_binding_3 PF01494.14 gi|284166224|ref|YP_003404503.1| - 1.1e-07 31.2 1.1 0.0018 17.4 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_binding_2 PF00890.19 gi|284166224|ref|YP_003404503.1| - 1.3e-06 27.5 3.5 2.9e-06 26.4 2.5 1.5 1 1 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|284166224|ref|YP_003404503.1| - 6.5e-05 22.1 6.3 0.00025 20.2 4.4 1.8 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|284166224|ref|YP_003404503.1| - 0.0025 17.9 0.2 1.9 8.4 0.0 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|284166224|ref|YP_003404503.1| - 0.0029 17.9 0.5 0.0029 17.9 0.3 2.4 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|284166224|ref|YP_003404503.1| - 0.0033 17.0 0.1 0.0057 16.3 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_8 PF13450.1 gi|284166224|ref|YP_003404503.1| - 0.013 15.4 0.8 0.044 13.8 0.5 1.9 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain ApbA PF02558.11 gi|284166224|ref|YP_003404503.1| - 0.019 14.4 0.2 0.038 13.4 0.1 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA YbjQ_1 PF01906.12 gi|284166224|ref|YP_003404503.1| - 0.021 15.2 0.0 0.054 13.9 0.0 1.6 1 0 0 1 1 1 0 Putative heavy-metal-binding Thi4 PF01946.12 gi|284166224|ref|YP_003404503.1| - 0.071 12.1 1.7 0.19 10.8 0.1 2.1 2 0 0 2 2 2 0 Thi4 family HI0933_like PF03486.9 gi|284166224|ref|YP_003404503.1| - 0.35 9.3 1.4 0.68 8.3 0.1 2.0 3 0 0 3 3 3 0 HI0933-like protein FGGY_N PF00370.16 gi|284166225|ref|YP_003404504.1| - 9.4e-76 254.3 0.0 1.4e-75 253.7 0.0 1.3 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.11 gi|284166225|ref|YP_003404504.1| - 1.3e-58 197.9 0.8 2.4e-58 197.0 0.5 1.5 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.15 gi|284166225|ref|YP_003404504.1| - 9.5e-05 21.8 0.1 0.0016 17.8 0.0 2.1 2 0 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family RTX PF02382.10 gi|284166226|ref|YP_003404505.1| - 0.16 10.1 0.9 0.24 9.6 0.6 1.2 1 0 0 1 1 1 0 RTX N-terminal domain DUF1326 PF07040.6 gi|284166227|ref|YP_003404506.1| - 1.3e-38 132.6 0.4 1.4e-38 132.4 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1326) DUF2182 PF09948.4 gi|284166228|ref|YP_003404507.1| - 6.7e-47 159.8 19.4 6.7e-47 159.8 13.5 1.5 2 0 0 2 2 2 1 Predicted metal-binding integral membrane protein (DUF2182) DUF3270 PF11674.3 gi|284166228|ref|YP_003404507.1| - 8 6.5 9.8 0.12 12.3 1.7 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3270) IncA PF04156.9 gi|284166229|ref|YP_003404508.1| - 0.0094 15.5 0.0 0.012 15.2 0.0 1.2 1 0 0 1 1 1 1 IncA protein MARVEL PF01284.18 gi|284166229|ref|YP_003404508.1| - 0.11 12.3 0.0 0.12 12.2 0.0 1.1 1 0 0 1 1 1 0 Membrane-associating domain PTR2 PF00854.16 gi|284166229|ref|YP_003404508.1| - 0.24 10.1 5.0 0.3 9.8 3.4 1.0 1 0 0 1 1 1 0 POT family Hydrolase_3 PF08282.7 gi|284166230|ref|YP_003404509.1| - 4.3e-25 88.7 0.0 1.1e-17 64.4 0.3 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|284166230|ref|YP_003404509.1| - 7.9e-07 28.6 0.0 8.9e-06 25.1 0.0 2.1 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.21 gi|284166230|ref|YP_003404509.1| - 6.3e-06 26.7 0.9 0.0011 19.4 0.1 3.1 2 1 1 3 3 3 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|284166230|ref|YP_003404509.1| - 8.2e-05 22.8 0.5 0.0056 16.8 0.0 2.6 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|284166230|ref|YP_003404509.1| - 0.0065 16.6 0.3 0.26 11.5 0.2 2.5 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|284166230|ref|YP_003404509.1| - 0.16 11.7 0.8 0.36 10.5 0.5 1.6 1 0 0 1 1 1 0 HAD-hyrolase-like DUF2157 PF09925.4 gi|284166231|ref|YP_003404510.1| - 0.095 12.3 1.2 0.11 12.1 0.9 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2157) Radical_SAM PF04055.16 gi|284166232|ref|YP_003404511.1| - 1e-20 74.5 1.2 6.6e-20 71.9 0.9 2.1 1 1 0 1 1 1 1 Radical SAM superfamily Wyosine_form PF08608.7 gi|284166232|ref|YP_003404511.1| - 2.2e-17 62.9 0.1 7e-17 61.2 0.0 1.9 2 0 0 2 2 2 1 Wyosine base formation HAD_2 PF13419.1 gi|284166232|ref|YP_003404511.1| - 0.0041 17.3 0.2 0.039 14.1 0.0 2.3 2 1 1 3 3 3 1 Haloacid dehalogenase-like hydrolase Fer4_12 PF13353.1 gi|284166232|ref|YP_003404511.1| - 0.0081 16.2 0.0 0.02 14.9 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain GCS2 PF04107.8 gi|284166233|ref|YP_003404512.1| - 2.2e-14 53.2 0.3 3.1e-14 52.7 0.2 1.2 1 0 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) Polysacc_synt_3 PF13440.1 gi|284166234|ref|YP_003404513.1| - 1.2e-18 67.4 17.7 1.2e-18 67.4 12.3 2.9 2 1 1 3 3 3 2 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|284166234|ref|YP_003404513.1| - 1.2e-16 60.8 12.4 1.2e-16 60.8 8.6 4.5 3 2 2 5 5 5 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt PF01943.12 gi|284166234|ref|YP_003404513.1| - 3.4e-16 59.3 6.8 3.4e-16 59.3 4.7 2.7 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Sulfatase PF00884.18 gi|284166235|ref|YP_003404514.1| - 6.7e-28 97.7 0.2 1.6e-27 96.5 0.1 1.5 1 1 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|284166235|ref|YP_003404514.1| - 0.073 12.3 0.0 0.2 10.9 0.0 1.8 1 0 0 1 1 1 0 Type I phosphodiesterase / nucleotide pyrophosphatase PS_pyruv_trans PF04230.8 gi|284166236|ref|YP_003404515.1| - 2.3e-05 24.2 0.0 0.024 14.3 0.0 2.2 2 0 0 2 2 2 2 Polysaccharide pyruvyl transferase ACT_7 PF13840.1 gi|284166237|ref|YP_003404516.1| - 7.9e-19 66.9 0.6 2.4e-18 65.4 0.0 1.9 2 0 0 2 2 2 1 ACT domain ACT PF01842.20 gi|284166237|ref|YP_003404516.1| - 0.00067 19.0 1.9 0.0023 17.3 0.1 2.6 2 2 1 3 3 3 1 ACT domain YejG PF13989.1 gi|284166237|ref|YP_003404516.1| - 0.081 12.9 0.1 0.12 12.3 0.0 1.4 1 1 0 1 1 1 0 YejG-like protein Lipoprotein_21 PF14041.1 gi|284166237|ref|YP_003404516.1| - 0.09 12.7 0.2 0.15 11.9 0.1 1.4 1 0 0 1 1 1 0 LppP/LprE lipoprotein Phosphodiest PF01663.17 gi|284166238|ref|YP_003404517.1| - 8e-17 61.6 0.5 2.9e-16 59.7 0.3 1.8 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.13 gi|284166238|ref|YP_003404517.1| - 0.00017 21.0 0.0 0.00025 20.5 0.0 1.2 1 0 0 1 1 1 1 Metalloenzyme superfamily Sulfatase PF00884.18 gi|284166239|ref|YP_003404518.1| - 1.2e-09 37.7 0.0 2e-09 37.0 0.0 1.5 1 1 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|284166239|ref|YP_003404518.1| - 0.01 15.2 0.2 0.036 13.3 0.0 1.8 2 0 0 2 2 2 0 Type I phosphodiesterase / nucleotide pyrophosphatase PilJ PF13675.1 gi|284166239|ref|YP_003404518.1| - 0.13 12.5 0.9 1.6 9.1 0.0 2.7 3 0 0 3 3 3 0 Type IV pili methyl-accepting chemotaxis transducer N-term Sulfatase PF00884.18 gi|284166240|ref|YP_003404519.1| - 1.4e-18 67.1 0.0 3.6e-18 65.8 0.0 1.7 1 1 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|284166240|ref|YP_003404519.1| - 8.5e-05 22.0 0.3 0.073 12.3 0.1 2.2 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.13 gi|284166240|ref|YP_003404519.1| - 0.0026 17.1 0.1 0.0045 16.4 0.1 1.3 1 0 0 1 1 1 1 Metalloenzyme superfamily Glycos_transf_1 PF00534.15 gi|284166241|ref|YP_003404520.1| - 3.5e-13 49.3 0.0 5.2e-13 48.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|284166241|ref|YP_003404520.1| - 4.3e-10 39.8 0.0 7e-10 39.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|284166241|ref|YP_003404520.1| - 0.098 12.9 0.0 0.21 11.8 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|284166242|ref|YP_003404521.1| - 8e-21 74.2 0.0 1.5e-20 73.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|284166242|ref|YP_003404521.1| - 1.2e-11 44.9 0.0 2.5e-11 43.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|284166242|ref|YP_003404521.1| - 7.4e-05 22.5 0.0 0.0003 20.5 0.0 2.0 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Osmo_CC PF08946.5 gi|284166242|ref|YP_003404521.1| - 0.11 12.5 0.3 0.28 11.2 0.1 1.7 2 0 0 2 2 2 0 Osmosensory transporter coiled coil Glyco_tranf_2_3 PF13641.1 gi|284166243|ref|YP_003404522.1| - 2.3e-25 89.7 0.1 3.6e-25 89.1 0.1 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.21 gi|284166243|ref|YP_003404522.1| - 2.3e-20 72.9 0.1 3.7e-20 72.2 0.0 1.4 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.1 gi|284166243|ref|YP_003404522.1| - 9.3e-18 64.6 0.0 1.3e-17 64.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|284166243|ref|YP_003404522.1| - 2.7e-10 39.8 0.0 4.7e-10 39.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Chitin_synth_2 PF03142.10 gi|284166243|ref|YP_003404522.1| - 0.09 11.1 0.0 0.14 10.5 0.0 1.2 1 0 0 1 1 1 0 Chitin synthase Glyco_tranf_2_2 PF10111.4 gi|284166243|ref|YP_003404522.1| - 0.097 11.7 0.0 0.18 10.8 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase like family 2 CTP-dep_RFKase PF01982.11 gi|284166244|ref|YP_003404523.1| - 3.9e-44 149.1 0.0 5.7e-44 148.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF120 HTH_20 PF12840.2 gi|284166244|ref|YP_003404523.1| - 4.5e-08 32.7 0.9 7.9e-08 31.9 0.6 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|284166244|ref|YP_003404523.1| - 1.4e-06 27.8 0.3 2.6e-06 26.9 0.2 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|284166244|ref|YP_003404523.1| - 5.3e-05 22.5 0.1 9.4e-05 21.7 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|284166244|ref|YP_003404523.1| - 8.6e-05 22.1 0.0 0.00018 21.1 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.1 gi|284166244|ref|YP_003404523.1| - 0.00014 21.2 0.2 0.00034 20.0 0.2 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|284166244|ref|YP_003404523.1| - 0.00053 19.5 0.1 0.00093 18.8 0.1 1.4 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.14 gi|284166244|ref|YP_003404523.1| - 0.0011 18.8 0.0 0.0026 17.6 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.1 gi|284166244|ref|YP_003404523.1| - 0.0011 18.6 0.0 0.0024 17.6 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_34 PF13601.1 gi|284166244|ref|YP_003404523.1| - 0.0018 18.2 0.0 0.0029 17.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|284166244|ref|YP_003404523.1| - 0.0028 17.9 0.2 0.0048 17.1 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain GntR PF00392.16 gi|284166244|ref|YP_003404523.1| - 0.0096 15.3 0.2 0.017 14.5 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_DeoR PF08220.7 gi|284166244|ref|YP_003404523.1| - 0.026 14.0 0.0 0.047 13.2 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_IclR PF09339.5 gi|284166244|ref|YP_003404523.1| - 0.033 13.7 0.8 0.054 13.0 0.6 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain Dimerisation PF08100.6 gi|284166244|ref|YP_003404523.1| - 0.069 12.9 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Dimerisation domain DUF2250 PF10007.4 gi|284166244|ref|YP_003404523.1| - 0.1 12.5 0.0 0.21 11.4 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Rrf2 PF02082.15 gi|284166244|ref|YP_003404523.1| - 0.14 12.2 0.0 0.23 11.6 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator DHBP_synthase PF00926.14 gi|284166245|ref|YP_003404524.1| - 1.3e-58 197.3 0.1 1.5e-58 197.1 0.1 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase Ribosomal_S24e PF01282.14 gi|284166245|ref|YP_003404524.1| - 0.16 11.7 0.0 0.27 11.0 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein S24e ABC2_membrane_2 PF12679.2 gi|284166246|ref|YP_003404525.1| - 9.1e-19 67.3 10.4 1.1e-18 67.0 7.2 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|284166246|ref|YP_003404525.1| - 1.7e-12 47.0 6.6 2.1e-12 46.6 4.6 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|284166246|ref|YP_003404525.1| - 1.4e-06 27.7 2.2 1.4e-06 27.7 1.5 1.7 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|284166246|ref|YP_003404525.1| - 2.4e-05 23.5 7.5 2.4e-05 23.5 5.2 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|284166247|ref|YP_003404526.1| - 1.4e-22 80.4 0.0 2e-22 79.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284166247|ref|YP_003404526.1| - 5.4e-16 59.3 0.1 2.4e-11 44.1 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|284166247|ref|YP_003404526.1| - 0.0031 17.0 0.0 1.6 8.1 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain AAA_29 PF13555.1 gi|284166247|ref|YP_003404526.1| - 0.023 14.2 0.1 0.043 13.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain PIN PF01850.16 gi|284166247|ref|YP_003404526.1| - 0.044 14.0 0.2 0.21 11.9 0.0 2.1 2 0 0 2 2 2 0 PIN domain AAA_23 PF13476.1 gi|284166247|ref|YP_003404526.1| - 0.049 13.9 0.0 0.067 13.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|284166247|ref|YP_003404526.1| - 0.13 11.3 0.0 0.22 10.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 PRC PF05239.11 gi|284166248|ref|YP_003404527.1| - 1.5e-10 40.7 0.1 1.6e-10 40.6 0.1 1.0 1 0 0 1 1 1 1 PRC-barrel domain Methyltransf_11 PF08241.7 gi|284166249|ref|YP_003404528.1| - 1.1e-16 61.0 0.1 2.5e-16 59.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|284166249|ref|YP_003404528.1| - 8.8e-16 57.8 0.0 1.3e-15 57.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|284166249|ref|YP_003404528.1| - 4.5e-13 49.2 0.0 7e-13 48.5 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|284166249|ref|YP_003404528.1| - 2.9e-11 43.5 0.0 5.5e-11 42.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|284166249|ref|YP_003404528.1| - 8.9e-11 42.1 0.0 1.7e-10 41.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|284166249|ref|YP_003404528.1| - 7e-10 39.4 1.2 1.4e-09 38.4 0.3 1.9 1 1 1 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|284166249|ref|YP_003404528.1| - 9e-09 34.7 0.0 1.5e-08 34.0 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MetW PF07021.7 gi|284166249|ref|YP_003404528.1| - 8.6e-07 28.5 0.0 1.5e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_26 PF13659.1 gi|284166249|ref|YP_003404528.1| - 1.3e-06 28.4 5.9 4.8e-06 26.5 4.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|284166249|ref|YP_003404528.1| - 1.2e-05 24.9 0.0 2.1e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|284166249|ref|YP_003404528.1| - 1.7e-05 24.2 0.0 3.9e-05 23.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase small domain RrnaAD PF00398.15 gi|284166249|ref|YP_003404528.1| - 0.00036 19.6 0.0 0.00087 18.3 0.0 1.4 1 1 0 2 2 2 1 Ribosomal RNA adenine dimethylase FtsJ PF01728.14 gi|284166249|ref|YP_003404528.1| - 0.00041 20.3 0.0 0.00065 19.7 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_32 PF13679.1 gi|284166249|ref|YP_003404528.1| - 0.0017 18.0 0.0 0.0033 17.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain FmrO PF07091.6 gi|284166249|ref|YP_003404528.1| - 0.015 14.2 0.0 0.027 13.4 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) Methyltransf_29 PF03141.11 gi|284166249|ref|YP_003404528.1| - 0.022 13.1 0.0 0.028 12.7 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase CMAS PF02353.15 gi|284166249|ref|YP_003404528.1| - 0.025 13.6 0.0 0.038 13.0 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_3 PF01596.12 gi|284166249|ref|YP_003404528.1| - 0.057 12.4 0.0 0.088 11.8 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase PrmA PF06325.8 gi|284166249|ref|YP_003404528.1| - 0.18 10.9 0.1 0.25 10.4 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) AP_endonuc_2 PF01261.19 gi|284166250|ref|YP_003404529.1| - 3.7e-26 91.7 1.1 1.7e-25 89.5 0.4 2.0 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel CstA PF02554.9 gi|284166251|ref|YP_003404530.1| - 1e-124 416.0 21.4 1e-124 416.0 14.8 1.9 1 1 1 3 3 3 1 Carbon starvation protein CstA DUF4161 PF13722.1 gi|284166251|ref|YP_003404530.1| - 2.8e-32 111.6 4.4 2.8e-32 111.6 3.1 3.1 3 0 0 3 3 3 1 C-terminal domain on CstA (DUF4161) DUF496 PF04363.7 gi|284166252|ref|YP_003404531.1| - 0.081 12.7 0.1 0.16 11.7 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF496) DUF606 PF04657.8 gi|284166255|ref|YP_003404534.1| - 0.014 15.4 1.9 0.02 15.0 1.4 1.3 1 1 0 1 1 1 0 Protein of unknown function, DUF606 CopD PF05425.8 gi|284166255|ref|YP_003404534.1| - 0.17 12.1 8.0 0.21 11.8 5.5 1.1 1 0 0 1 1 1 0 Copper resistance protein D Bax1-I PF01027.15 gi|284166255|ref|YP_003404534.1| - 1.2 8.7 5.9 1.7 8.2 4.1 1.3 1 1 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 Zn-ribbon_8 PF09723.5 gi|284166256|ref|YP_003404535.1| - 0.001 18.9 0.7 0.0018 18.2 0.5 1.4 1 0 0 1 1 1 1 Zinc ribbon domain DZR PF12773.2 gi|284166256|ref|YP_003404535.1| - 0.0011 18.6 1.0 0.0015 18.2 0.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon TerY-C PF15616.1 gi|284166256|ref|YP_003404535.1| - 0.0022 17.9 1.7 0.0026 17.7 1.2 1.2 1 0 0 1 1 1 1 TerY-C metal binding domain zf-RING_3 PF14369.1 gi|284166256|ref|YP_003404535.1| - 0.0027 17.6 0.7 0.0042 17.0 0.5 1.3 1 0 0 1 1 1 1 zinc-finger zf-ribbon_3 PF13248.1 gi|284166256|ref|YP_003404535.1| - 0.011 14.9 1.0 0.099 11.8 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-IS66 PF13005.2 gi|284166256|ref|YP_003404535.1| - 0.012 15.5 1.7 0.13 12.2 0.2 2.3 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zinc-ribbons_6 PF07191.7 gi|284166256|ref|YP_003404535.1| - 0.013 15.2 0.3 0.023 14.4 0.2 1.4 1 1 0 1 1 1 0 zinc-ribbons zinc_ribbon_2 PF13240.1 gi|284166256|ref|YP_003404535.1| - 0.03 13.8 1.0 0.21 11.0 0.7 2.1 1 1 0 1 1 1 0 zinc-ribbon domain YdjO PF14169.1 gi|284166256|ref|YP_003404535.1| - 0.057 12.8 0.6 0.083 12.3 0.4 1.3 1 0 0 1 1 1 0 Cold-inducible protein YdjO YhfH PF14149.1 gi|284166256|ref|YP_003404535.1| - 0.068 12.9 0.5 3.2 7.6 0.1 2.2 2 0 0 2 2 2 0 YhfH-like protein HypA PF01155.14 gi|284166256|ref|YP_003404535.1| - 0.085 12.5 0.8 0.1 12.2 0.6 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF1451 PF07295.6 gi|284166256|ref|YP_003404535.1| - 0.11 12.2 0.1 0.13 11.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) DNA_RNApol_7kD PF03604.8 gi|284166256|ref|YP_003404535.1| - 0.13 11.7 2.9 2.2 7.8 1.7 2.2 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit PhnA_Zn_Ribbon PF08274.7 gi|284166256|ref|YP_003404535.1| - 0.14 11.9 1.0 1.5 8.6 0.1 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Zn_ribbon_recom PF13408.1 gi|284166256|ref|YP_003404535.1| - 0.15 12.3 1.3 1.3 9.3 0.0 2.1 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain Ogr_Delta PF04606.7 gi|284166256|ref|YP_003404535.1| - 0.16 11.6 0.6 0.57 9.8 0.1 1.9 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-C4_Topoisom PF01396.14 gi|284166256|ref|YP_003404535.1| - 0.2 11.1 1.7 0.47 9.9 0.2 2.0 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger TF_Zn_Ribbon PF08271.7 gi|284166256|ref|YP_003404535.1| - 0.41 10.0 7.1 0.82 9.0 2.6 2.1 1 1 2 3 3 3 0 TFIIB zinc-binding DUF983 PF06170.7 gi|284166256|ref|YP_003404535.1| - 0.48 10.5 1.7 0.7 10.0 0.1 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF983) zf-HYPF PF07503.7 gi|284166256|ref|YP_003404535.1| - 0.66 9.4 4.2 2.4 7.6 0.1 2.4 3 0 0 3 3 2 0 HypF finger Lar_restr_allev PF14354.1 gi|284166256|ref|YP_003404535.1| - 0.8 10.0 4.4 18 5.7 3.0 2.3 1 1 0 1 1 1 0 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.2 gi|284166256|ref|YP_003404535.1| - 0.99 9.2 5.4 0.75 9.6 0.5 2.1 1 1 0 2 2 2 0 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|284166256|ref|YP_003404535.1| - 1.1 8.9 3.6 1.4 8.6 0.9 1.9 1 1 2 3 3 3 0 Putative transposase DNA-binding domain cobW PF02492.14 gi|284166257|ref|YP_003404536.1| - 1.2e-48 164.9 0.1 1.5e-48 164.6 0.1 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.9 gi|284166257|ref|YP_003404536.1| - 2.2e-27 94.5 0.0 4.2e-27 93.6 0.0 1.5 1 0 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain GTP_EFTU PF00009.22 gi|284166257|ref|YP_003404536.1| - 0.00043 19.7 0.0 0.49 9.8 0.0 2.4 3 0 0 3 3 3 2 Elongation factor Tu GTP binding domain T2SE PF00437.15 gi|284166257|ref|YP_003404536.1| - 0.0023 16.8 0.1 0.0047 15.8 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein UPF0079 PF02367.12 gi|284166257|ref|YP_003404536.1| - 0.0034 17.0 0.1 0.0095 15.5 0.0 1.7 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 DUF258 PF03193.11 gi|284166257|ref|YP_003404536.1| - 0.004 16.3 0.3 0.0067 15.6 0.2 1.4 1 1 0 1 1 1 1 Protein of unknown function, DUF258 MMR_HSR1 PF01926.18 gi|284166257|ref|YP_003404536.1| - 0.0048 16.8 0.0 0.032 14.1 0.0 2.1 1 1 0 1 1 1 1 50S ribosome-binding GTPase TrwB_AAD_bind PF10412.4 gi|284166257|ref|YP_003404536.1| - 0.008 14.8 0.0 0.013 14.1 0.0 1.2 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain AAA_16 PF13191.1 gi|284166257|ref|YP_003404536.1| - 0.0086 16.0 0.2 0.024 14.6 0.1 2.0 1 1 0 1 1 1 1 AAA ATPase domain CbiA PF01656.18 gi|284166257|ref|YP_003404536.1| - 0.0099 15.3 0.0 0.014 14.8 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Zeta_toxin PF06414.7 gi|284166257|ref|YP_003404536.1| - 0.018 14.1 0.0 0.033 13.2 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_22 PF13401.1 gi|284166257|ref|YP_003404536.1| - 0.025 14.7 0.0 0.052 13.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|284166257|ref|YP_003404536.1| - 0.043 13.4 0.0 0.081 12.5 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_33 PF13671.1 gi|284166257|ref|YP_003404536.1| - 0.07 13.0 0.1 0.21 11.4 0.0 1.8 2 0 0 2 2 1 0 AAA domain Arch_ATPase PF01637.13 gi|284166257|ref|YP_003404536.1| - 0.083 12.5 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase MobB PF03205.9 gi|284166257|ref|YP_003404536.1| - 0.086 12.5 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|284166257|ref|YP_003404536.1| - 0.1 11.9 0.0 0.18 11.1 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_29 PF13555.1 gi|284166257|ref|YP_003404536.1| - 0.12 11.9 0.2 0.25 10.9 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|284166257|ref|YP_003404536.1| - 0.15 12.3 0.0 0.28 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|284166257|ref|YP_003404536.1| - 0.17 12.1 0.0 0.32 11.2 0.0 1.4 1 0 0 1 1 1 0 ABC transporter AAA_14 PF13173.1 gi|284166257|ref|YP_003404536.1| - 0.2 11.5 0.0 0.32 10.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain Cytochrom_B559a PF00284.15 gi|284166258|ref|YP_003404537.1| - 0.021 14.3 0.1 0.048 13.1 0.1 1.6 1 0 0 1 1 1 0 Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit ArsA_ATPase PF02374.10 gi|284166259|ref|YP_003404538.1| - 3.2e-71 239.8 0.0 3.8e-71 239.6 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.18 gi|284166259|ref|YP_003404538.1| - 5.7e-14 51.9 0.0 1.2e-13 50.9 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|284166259|ref|YP_003404538.1| - 2.7e-06 27.4 0.0 3.3e-05 23.8 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|284166259|ref|YP_003404538.1| - 0.0017 17.7 0.3 0.0084 15.5 0.2 1.9 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|284166259|ref|YP_003404538.1| - 0.0022 17.5 0.0 0.0026 17.2 0.0 1.1 1 0 0 1 1 1 1 AAA-like domain Fer4_NifH PF00142.13 gi|284166259|ref|YP_003404538.1| - 0.0031 16.7 0.0 0.0062 15.7 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_26 PF13500.1 gi|284166259|ref|YP_003404538.1| - 0.0062 16.1 0.1 0.034 13.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|284166259|ref|YP_003404538.1| - 0.008 15.6 0.1 0.014 14.7 0.1 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein ArgK PF03308.11 gi|284166259|ref|YP_003404538.1| - 0.022 13.5 0.0 0.14 10.9 0.1 1.9 2 0 0 2 2 2 0 ArgK protein PhoH PF02562.11 gi|284166259|ref|YP_003404538.1| - 0.15 11.3 0.1 0.33 10.1 0.0 1.6 2 0 0 2 2 2 0 PhoH-like protein AAA_19 PF13245.1 gi|284166259|ref|YP_003404538.1| - 0.24 11.2 1.5 0.88 9.3 0.1 2.5 2 0 0 2 2 2 0 Part of AAA domain AAA_24 PF13479.1 gi|284166259|ref|YP_003404538.1| - 2.7 7.5 5.4 24 4.4 3.7 2.3 1 1 0 1 1 1 0 AAA domain HATPase_c PF02518.21 gi|284166260|ref|YP_003404539.1| - 1.1e-25 89.4 0.0 2.2e-25 88.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|284166260|ref|YP_003404539.1| - 6e-11 42.1 0.3 6e-11 42.1 0.2 2.7 2 1 1 3 3 3 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.1 gi|284166260|ref|YP_003404539.1| - 0.0035 17.0 0.0 0.006 16.2 0.0 1.4 1 0 0 1 1 1 1 GHKL domain DUF1469 PF07332.6 gi|284166260|ref|YP_003404539.1| - 0.019 14.7 4.4 1.4 8.6 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1469) HATPase_c_2 PF13581.1 gi|284166260|ref|YP_003404539.1| - 0.042 13.6 0.7 0.079 12.7 0.0 1.8 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain bZIP_2 PF07716.10 gi|284166260|ref|YP_003404539.1| - 0.14 12.0 1.8 0.27 11.0 1.2 1.4 1 0 0 1 1 1 0 Basic region leucine zipper MMR_HSR1_C PF08438.5 gi|284166261|ref|YP_003404540.1| - 2.2e-33 114.7 0.0 4.6e-33 113.7 0.0 1.6 2 0 0 2 2 2 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|284166261|ref|YP_003404540.1| - 2.2e-18 66.3 0.0 4e-17 62.2 0.0 2.5 2 1 0 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.16 gi|284166261|ref|YP_003404540.1| - 8.2e-09 35.1 0.0 2e-08 33.9 0.0 1.6 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|284166261|ref|YP_003404540.1| - 1.2e-06 27.8 0.1 0.00042 19.6 0.0 2.6 3 0 0 3 3 3 2 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|284166261|ref|YP_003404540.1| - 0.011 15.2 0.0 0.027 13.9 0.0 1.7 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain Miro PF08477.8 gi|284166261|ref|YP_003404540.1| - 0.045 14.2 0.0 0.19 12.2 0.0 2.2 2 1 0 2 2 2 0 Miro-like protein Dynamin_N PF00350.18 gi|284166261|ref|YP_003404540.1| - 0.056 13.2 1.0 0.39 10.5 0.0 2.6 3 1 0 3 3 3 0 Dynamin family ABC_tran_2 PF12848.2 gi|284166261|ref|YP_003404540.1| - 0.082 12.7 0.1 0.16 11.8 0.1 1.4 1 0 0 1 1 1 0 ABC transporter YchF-GTPase_C PF06071.8 gi|284166261|ref|YP_003404540.1| - 0.14 11.9 0.1 26 4.6 0.0 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF933) HTH_24 PF13412.1 gi|284166262|ref|YP_003404541.1| - 4e-14 51.7 0.3 6.1e-14 51.1 0.2 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|284166262|ref|YP_003404541.1| - 2e-10 40.0 0.4 4.5e-10 38.9 0.3 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|284166262|ref|YP_003404541.1| - 2.4e-09 36.6 0.1 4.7e-09 35.7 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_DeoR PF08220.7 gi|284166262|ref|YP_003404541.1| - 1.5e-05 24.3 0.3 3.2e-05 23.3 0.1 1.6 2 0 0 2 2 1 1 DeoR-like helix-turn-helix domain MarR_2 PF12802.2 gi|284166262|ref|YP_003404541.1| - 2.3e-05 23.9 0.1 7.8e-05 22.2 0.0 1.8 2 0 0 2 2 2 1 MarR family Fe_dep_repress PF01325.14 gi|284166262|ref|YP_003404541.1| - 7e-05 22.6 0.0 0.00014 21.7 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.17 gi|284166262|ref|YP_003404541.1| - 0.0002 21.0 0.0 0.00073 19.1 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|284166262|ref|YP_003404541.1| - 0.00024 20.8 0.0 0.00052 19.7 0.0 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain GntR PF00392.16 gi|284166262|ref|YP_003404541.1| - 0.00027 20.3 0.4 0.00058 19.2 0.1 1.6 2 0 0 2 2 1 1 Bacterial regulatory proteins, gntR family HTH_10 PF04967.7 gi|284166262|ref|YP_003404541.1| - 0.00031 20.2 0.1 0.00079 18.9 0.1 1.7 1 0 0 1 1 1 1 HTH DNA binding domain HTH_23 PF13384.1 gi|284166262|ref|YP_003404541.1| - 0.00033 20.2 0.1 0.00062 19.3 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_IclR PF09339.5 gi|284166262|ref|YP_003404541.1| - 0.00073 19.0 0.0 0.0014 18.1 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_38 PF13936.1 gi|284166262|ref|YP_003404541.1| - 0.00092 18.7 0.1 0.0018 17.8 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_CodY PF08222.6 gi|284166262|ref|YP_003404541.1| - 0.0011 18.1 0.2 0.0025 17.1 0.1 1.5 1 0 0 1 1 1 1 CodY helix-turn-helix domain FaeA PF04703.7 gi|284166262|ref|YP_003404541.1| - 0.0013 18.8 0.0 0.003 17.6 0.0 1.6 1 0 0 1 1 1 1 FaeA-like protein HTH_27 PF13463.1 gi|284166262|ref|YP_003404541.1| - 0.0014 18.9 0.0 0.003 17.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain LexA_DNA_bind PF01726.11 gi|284166262|ref|YP_003404541.1| - 0.0022 17.5 0.1 0.0048 16.4 0.0 1.6 1 1 0 1 1 1 1 LexA DNA binding domain EAP30 PF04157.11 gi|284166262|ref|YP_003404541.1| - 0.0024 17.0 0.1 0.035 13.2 0.0 2.0 2 0 0 2 2 2 1 EAP30/Vps36 family HTH_Crp_2 PF13545.1 gi|284166262|ref|YP_003404541.1| - 0.0026 17.5 0.2 0.0057 16.4 0.1 1.6 1 1 1 2 2 1 1 Crp-like helix-turn-helix domain TrmB PF01978.14 gi|284166262|ref|YP_003404541.1| - 0.0028 17.3 0.1 0.0087 15.7 0.0 1.8 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|284166262|ref|YP_003404541.1| - 0.0037 17.3 0.0 0.0082 16.2 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_28 PF13518.1 gi|284166262|ref|YP_003404541.1| - 0.0046 16.9 0.1 0.0087 16.0 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|284166262|ref|YP_003404541.1| - 0.0061 16.7 0.0 0.013 15.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix HrcA_DNA-bdg PF03444.10 gi|284166262|ref|YP_003404541.1| - 0.019 14.4 0.0 0.03 13.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_30 PF13556.1 gi|284166262|ref|YP_003404541.1| - 0.019 14.5 0.2 0.044 13.3 0.1 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|284166262|ref|YP_003404541.1| - 0.019 14.3 0.3 0.054 12.9 0.1 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 MerR PF00376.18 gi|284166262|ref|YP_003404541.1| - 0.039 13.5 0.2 0.093 12.3 0.2 1.7 1 1 0 1 1 1 0 MerR family regulatory protein RepL PF05732.6 gi|284166262|ref|YP_003404541.1| - 0.043 13.0 0.0 0.065 12.4 0.0 1.2 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) DUF4423 PF14394.1 gi|284166262|ref|YP_003404541.1| - 0.051 13.1 0.0 0.11 12.0 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) RPA_C PF08784.6 gi|284166262|ref|YP_003404541.1| - 0.051 13.9 0.1 0.63 10.4 0.0 2.3 2 1 0 2 2 2 0 Replication protein A C terminal DDRGK PF09756.4 gi|284166262|ref|YP_003404541.1| - 0.055 12.8 0.0 0.078 12.3 0.0 1.2 1 0 0 1 1 1 0 DDRGK domain HTH_5 PF01022.15 gi|284166262|ref|YP_003404541.1| - 0.066 12.8 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_17 PF12728.2 gi|284166262|ref|YP_003404541.1| - 0.077 13.2 0.0 0.13 12.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF746 PF05344.6 gi|284166262|ref|YP_003404541.1| - 0.098 12.1 0.1 0.51 9.9 0.0 2.0 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) PaaX PF07848.7 gi|284166262|ref|YP_003404541.1| - 0.12 12.4 0.0 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 PaaX-like protein Put_DNA-bind_N PF06971.8 gi|284166262|ref|YP_003404541.1| - 0.12 12.1 0.1 0.35 10.6 0.0 1.7 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus HTH_31 PF13560.1 gi|284166262|ref|YP_003404541.1| - 0.14 12.3 1.0 0.41 10.8 0.0 2.1 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_Mga PF08280.6 gi|284166262|ref|YP_003404541.1| - 0.16 11.7 0.0 0.28 10.9 0.0 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain Polyketide_cyc2 PF10604.4 gi|284166265|ref|YP_003404544.1| - 0.0016 18.6 1.6 0.0027 17.8 1.1 1.5 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Spermine_synth PF01564.12 gi|284166266|ref|YP_003404545.1| - 3.6e-10 39.1 0.8 6.1e-10 38.4 0.5 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase Methyltransf_18 PF12847.2 gi|284166266|ref|YP_003404545.1| - 0.071 13.6 0.0 0.19 12.3 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain adh_short PF00106.20 gi|284166267|ref|YP_003404546.1| - 5.8e-23 81.6 0.6 7.5e-23 81.2 0.4 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|284166267|ref|YP_003404546.1| - 7.8e-12 45.2 0.4 1.2e-11 44.6 0.3 1.1 1 0 0 1 1 1 1 KR domain adh_short_C2 PF13561.1 gi|284166267|ref|YP_003404546.1| - 3.1e-07 30.4 0.0 4.3e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase THF_DHG_CYH_C PF02882.14 gi|284166267|ref|YP_003404546.1| - 0.018 14.1 0.0 0.031 13.3 0.0 1.3 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HHH_5 PF14520.1 gi|284166267|ref|YP_003404546.1| - 0.029 14.5 0.2 0.17 12.1 0.2 2.2 1 1 0 1 1 1 0 Helix-hairpin-helix domain Epimerase PF01370.16 gi|284166267|ref|YP_003404546.1| - 0.098 12.0 0.1 0.18 11.1 0.1 1.5 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|284166267|ref|YP_003404546.1| - 0.18 10.4 0.0 0.26 9.9 0.0 1.2 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family Usp PF00582.21 gi|284166268|ref|YP_003404547.1| - 1.7e-14 54.2 2.8 1.9e-14 54.0 2.0 1.0 1 0 0 1 1 1 1 Universal stress protein family Asp_Glu_race PF01177.17 gi|284166268|ref|YP_003404547.1| - 0.034 14.0 0.4 0.98 9.2 0.2 2.0 1 1 1 2 2 2 0 Asp/Glu/Hydantoin racemase E1_dh PF00676.15 gi|284166270|ref|YP_003404549.1| - 7.9e-78 261.2 0.0 9.7e-78 260.9 0.0 1.1 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.1 gi|284166270|ref|YP_003404549.1| - 5e-07 28.9 0.0 7e-07 28.4 0.0 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase Transketolase_N PF00456.16 gi|284166270|ref|YP_003404549.1| - 0.00028 19.8 0.1 0.00084 18.2 0.0 1.6 1 1 1 2 2 2 1 Transketolase, thiamine diphosphate binding domain TPP_enzyme_C PF02775.16 gi|284166270|ref|YP_003404549.1| - 0.0072 15.9 0.1 0.015 14.8 0.1 1.5 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HTH_41 PF14502.1 gi|284166270|ref|YP_003404549.1| - 0.058 13.0 0.2 0.15 11.6 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain DUF4229 PF14012.1 gi|284166271|ref|YP_003404550.1| - 0.014 15.3 1.5 0.022 14.6 1.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4229) IncA PF04156.9 gi|284166271|ref|YP_003404550.1| - 0.019 14.6 0.0 0.023 14.2 0.0 1.2 1 0 0 1 1 1 0 IncA protein DUF3040 PF11239.3 gi|284166271|ref|YP_003404550.1| - 0.019 14.9 2.3 0.033 14.2 1.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) CoA_transf_3 PF02515.12 gi|284166272|ref|YP_003404551.1| - 3.7e-64 215.4 0.1 5.3e-64 214.9 0.1 1.2 1 0 0 1 1 1 1 CoA-transferase family III CBS PF00571.23 gi|284166273|ref|YP_003404552.1| - 6.4e-26 89.8 1.2 7e-12 44.9 0.0 2.2 2 0 0 2 2 2 2 CBS domain Hexapep PF00132.19 gi|284166274|ref|YP_003404553.1| - 3.1e-15 54.9 8.2 3e-06 26.4 1.1 3.6 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|284166274|ref|YP_003404553.1| - 1.3e-08 34.2 4.4 0.0013 18.2 0.9 3.0 2 1 1 3 3 3 2 Hexapeptide repeat of succinyl-transferase HHH_5 PF14520.1 gi|284166275|ref|YP_003404554.1| - 4.5e-09 36.3 1.9 1.6e-08 34.6 1.3 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain Apolipoprotein PF01442.13 gi|284166275|ref|YP_003404554.1| - 0.00093 18.7 27.6 0.0036 16.8 17.1 2.2 1 1 1 2 2 2 2 Apolipoprotein A1/A4/E domain FbpA PF05833.6 gi|284166275|ref|YP_003404554.1| - 0.0034 15.9 14.0 0.0043 15.6 9.7 1.2 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF883 PF05957.8 gi|284166275|ref|YP_003404554.1| - 0.0037 17.6 6.9 0.0037 17.6 4.8 4.2 1 1 3 4 4 4 1 Bacterial protein of unknown function (DUF883) MRP-S27 PF10037.4 gi|284166275|ref|YP_003404554.1| - 0.0058 15.6 14.6 0.0067 15.4 10.1 1.2 1 0 0 1 1 1 1 Mitochondrial 28S ribosomal protein S27 AAA_13 PF13166.1 gi|284166275|ref|YP_003404554.1| - 0.0059 15.1 11.0 0.0072 14.8 7.6 1.3 1 0 0 1 1 1 1 AAA domain AbiH PF14253.1 gi|284166275|ref|YP_003404554.1| - 0.011 15.3 6.1 0.017 14.7 4.2 1.3 1 0 0 1 1 1 0 Bacteriophage abortive infection AbiH Prefoldin PF02996.12 gi|284166275|ref|YP_003404554.1| - 0.018 14.7 7.1 0.018 14.7 4.9 4.0 3 1 2 5 5 3 0 Prefoldin subunit DUF1484 PF07363.6 gi|284166275|ref|YP_003404554.1| - 0.097 13.0 10.3 3.4 8.0 0.0 2.9 2 1 1 3 3 2 0 Protein of unknown function (DUF1484) V_ATPase_I PF01496.14 gi|284166275|ref|YP_003404554.1| - 0.1 10.4 9.8 0.11 10.2 6.8 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family ALMT PF11744.3 gi|284166275|ref|YP_003404554.1| - 0.11 11.0 2.5 0.58 8.7 1.6 1.8 1 1 1 2 2 2 0 Aluminium activated malate transporter DUF4332 PF14229.1 gi|284166275|ref|YP_003404554.1| - 0.17 11.8 0.2 0.17 11.8 0.1 4.5 3 2 1 4 4 4 0 Domain of unknown function (DUF4332) Prominin PF05478.6 gi|284166275|ref|YP_003404554.1| - 0.18 9.3 11.4 0.2 9.1 4.9 1.7 1 1 1 2 2 2 0 Prominin Rsd_AlgQ PF04353.8 gi|284166275|ref|YP_003404554.1| - 0.28 10.8 15.8 0.028 14.1 4.2 2.4 1 1 0 2 2 2 0 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ AAA_23 PF13476.1 gi|284166275|ref|YP_003404554.1| - 0.31 11.3 14.6 0.42 10.9 10.1 1.3 1 0 0 1 1 1 0 AAA domain DUF2779 PF11074.3 gi|284166275|ref|YP_003404554.1| - 0.34 10.9 3.6 0.88 9.6 2.4 1.8 1 1 0 1 1 1 0 Domain of unknown function(DUF2779) Atg14 PF10186.4 gi|284166275|ref|YP_003404554.1| - 0.4 9.5 13.8 0.66 8.8 9.6 1.3 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DUF3584 PF12128.3 gi|284166275|ref|YP_003404554.1| - 0.41 7.9 31.3 0.47 7.7 21.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) RRF_GI PF12614.3 gi|284166275|ref|YP_003404554.1| - 0.57 10.0 11.0 1.2 8.9 4.4 2.5 1 1 1 2 2 2 0 Ribosome recycling factor DUF2935 PF11155.3 gi|284166275|ref|YP_003404554.1| - 0.86 9.6 10.2 0.32 11.1 2.4 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF2935) Fib_alpha PF08702.5 gi|284166275|ref|YP_003404554.1| - 0.92 9.6 13.1 1.7 8.7 7.7 2.1 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family FAD-SLDH PF12318.3 gi|284166275|ref|YP_003404554.1| - 1.2 8.8 11.5 0.29 10.8 5.2 1.9 2 0 0 2 2 2 0 Membrane bound FAD containing D-sorbitol dehydrogenase DUF4238 PF14022.1 gi|284166275|ref|YP_003404554.1| - 1.4 8.1 6.2 1.9 7.6 4.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4238) Halogen_Hydrol PF10112.4 gi|284166275|ref|YP_003404554.1| - 1.6 8.0 14.5 0.061 12.7 2.5 2.2 1 1 1 2 2 2 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein Raptor_N PF14538.1 gi|284166275|ref|YP_003404554.1| - 1.7 8.4 4.2 32 4.3 2.9 2.4 1 1 0 1 1 1 0 Raptor N-terminal CASPase like domain Exonuc_VII_L PF02601.10 gi|284166275|ref|YP_003404554.1| - 1.8 7.6 16.4 1.4 8.0 10.4 1.4 1 1 0 1 1 1 0 Exonuclease VII, large subunit Baculo_PEP_C PF04513.7 gi|284166275|ref|YP_003404554.1| - 1.9 8.3 16.8 1.3 8.8 7.6 2.5 1 1 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus GIDA_assoc_3 PF13932.1 gi|284166275|ref|YP_003404554.1| - 2.3 8.3 7.1 44 4.2 1.3 3.7 2 2 1 3 3 3 0 GidA associated domain 3 CorA PF01544.13 gi|284166275|ref|YP_003404554.1| - 2.5 7.0 14.9 0.66 8.9 5.8 2.1 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein DUF3994 PF13159.1 gi|284166275|ref|YP_003404554.1| - 2.6 8.3 9.9 0.78 10.0 0.8 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF3994) DUF3347 PF11827.3 gi|284166275|ref|YP_003404554.1| - 3.5 7.6 19.6 0.16 11.9 2.8 2.4 1 1 2 3 3 3 0 Protein of unknown function (DUF3347) SPX PF03105.14 gi|284166275|ref|YP_003404554.1| - 7.5 6.2 26.4 26 4.4 6.8 2.6 1 1 1 2 2 2 0 SPX domain TPR_MLP1_2 PF07926.7 gi|284166275|ref|YP_003404554.1| - 8 6.2 29.1 0.36 10.5 13.7 2.7 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein Mgr1 PF08602.5 gi|284166275|ref|YP_003404554.1| - 9 5.1 6.6 13 4.6 4.6 1.3 1 0 0 1 1 1 0 Mgr1-like, i-AAA protease complex subunit Laminin_II PF06009.7 gi|284166275|ref|YP_003404554.1| - 9.3 6.0 14.6 9.3 6.0 6.8 2.8 1 1 2 3 3 3 0 Laminin Domain II Metallophos PF00149.23 gi|284166276|ref|YP_003404555.1| - 9.3e-08 31.7 0.4 3.1e-05 23.4 0.3 2.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|284166276|ref|YP_003404555.1| - 2.2e-07 30.8 0.0 3.5e-07 30.1 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.1 gi|284166276|ref|YP_003404555.1| - 0.021 13.9 0.0 0.033 13.3 0.0 1.4 1 1 0 1 1 1 0 Metallophosphoesterase, calcineurin superfamily Gln-synt_C PF00120.19 gi|284166277|ref|YP_003404556.1| - 2.8e-104 347.8 0.0 8.3e-104 346.3 0.0 1.7 2 0 0 2 2 2 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|284166277|ref|YP_003404556.1| - 3.9e-31 106.4 0.0 8.4e-31 105.4 0.0 1.6 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain AsnC_trans_reg PF01037.16 gi|284166278|ref|YP_003404557.1| - 3.4e-12 45.9 0.0 5.8e-12 45.1 0.0 1.4 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|284166278|ref|YP_003404557.1| - 4.4e-10 38.7 0.1 8.5e-10 37.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|284166278|ref|YP_003404557.1| - 8.7e-07 28.3 0.0 1.4e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.2 gi|284166278|ref|YP_003404557.1| - 2.6e-06 27.1 0.1 5.9e-06 25.9 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|284166278|ref|YP_003404557.1| - 4.1e-06 26.3 0.1 6.1e-06 25.8 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|284166278|ref|YP_003404557.1| - 6.2e-06 25.7 0.0 1.2e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|284166278|ref|YP_003404557.1| - 0.00013 21.6 0.0 0.00024 20.7 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_DeoR PF08220.7 gi|284166278|ref|YP_003404557.1| - 0.00014 21.3 0.0 0.00023 20.6 0.0 1.3 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_28 PF13518.1 gi|284166278|ref|YP_003404557.1| - 0.0013 18.6 0.0 0.0021 18.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|284166278|ref|YP_003404557.1| - 0.0014 18.2 0.0 0.0024 17.4 0.0 1.4 1 0 0 1 1 1 1 MarR family GntR PF00392.16 gi|284166278|ref|YP_003404557.1| - 0.002 17.4 0.1 0.0049 16.2 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR PF01047.17 gi|284166278|ref|YP_003404557.1| - 0.0048 16.5 0.0 0.0093 15.6 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_10 PF04967.7 gi|284166278|ref|YP_003404557.1| - 0.0095 15.5 0.0 0.021 14.4 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_IclR PF09339.5 gi|284166278|ref|YP_003404557.1| - 0.02 14.4 0.1 0.035 13.6 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain Fe_dep_repress PF01325.14 gi|284166278|ref|YP_003404557.1| - 0.035 14.0 0.0 0.078 12.9 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_34 PF13601.1 gi|284166278|ref|YP_003404557.1| - 0.045 13.7 0.0 0.095 12.7 0.0 1.5 2 0 0 2 2 1 0 Winged helix DNA-binding domain Mga PF05043.8 gi|284166278|ref|YP_003404557.1| - 0.048 13.9 0.0 0.2 11.9 0.0 1.8 2 0 0 2 2 2 0 Mga helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|284166278|ref|YP_003404557.1| - 0.086 12.6 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_23 PF13384.1 gi|284166278|ref|YP_003404557.1| - 0.086 12.5 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain HTH_27 PF13463.1 gi|284166278|ref|YP_003404557.1| - 0.11 12.7 0.0 0.29 11.4 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain ABC_tran PF00005.22 gi|284166279|ref|YP_003404558.1| - 1.7e-35 122.2 0.0 3.2e-35 121.4 0.0 1.5 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.18 gi|284166279|ref|YP_003404558.1| - 2.1e-30 106.0 7.2 2.6e-30 105.7 5.0 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.14 gi|284166279|ref|YP_003404558.1| - 7.7e-06 25.3 0.0 0.00013 21.2 0.0 2.2 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|284166279|ref|YP_003404558.1| - 3e-05 24.0 0.4 6e-05 23.1 0.3 1.5 1 0 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|284166279|ref|YP_003404558.1| - 0.00018 20.7 0.0 0.00031 19.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|284166279|ref|YP_003404558.1| - 0.00042 21.1 0.1 0.0015 19.3 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.1 gi|284166279|ref|YP_003404558.1| - 0.00064 19.7 0.0 0.013 15.4 0.0 2.3 1 1 1 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|284166279|ref|YP_003404558.1| - 0.0013 17.8 0.0 0.0027 16.8 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_33 PF13671.1 gi|284166279|ref|YP_003404558.1| - 0.0014 18.5 0.1 0.031 14.1 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|284166279|ref|YP_003404558.1| - 0.0026 17.2 0.0 0.0064 15.9 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|284166279|ref|YP_003404558.1| - 0.0089 16.1 0.1 0.035 14.2 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|284166279|ref|YP_003404558.1| - 0.0091 16.2 0.0 0.058 13.5 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|284166279|ref|YP_003404558.1| - 0.01 15.2 2.7 0.058 12.8 1.9 2.2 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|284166279|ref|YP_003404558.1| - 0.011 15.2 0.0 0.033 13.6 0.0 1.9 2 0 0 2 2 2 0 AAA-like domain MobB PF03205.9 gi|284166279|ref|YP_003404558.1| - 0.017 14.8 0.0 0.043 13.5 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1 PF01926.18 gi|284166279|ref|YP_003404558.1| - 0.018 14.9 0.4 0.11 12.4 0.3 2.4 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_18 PF13238.1 gi|284166279|ref|YP_003404558.1| - 0.033 14.4 0.1 0.15 12.3 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|284166279|ref|YP_003404558.1| - 0.049 13.3 0.0 0.15 11.7 0.0 1.9 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_28 PF13521.1 gi|284166279|ref|YP_003404558.1| - 0.05 13.5 1.1 2.1 8.2 0.1 2.6 1 1 0 2 2 2 0 AAA domain DUF87 PF01935.12 gi|284166279|ref|YP_003404558.1| - 0.051 13.3 0.1 0.11 12.2 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function DUF87 AAA_23 PF13476.1 gi|284166279|ref|YP_003404558.1| - 0.062 13.6 0.0 0.12 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|284166279|ref|YP_003404558.1| - 0.15 11.9 0.0 0.46 10.3 0.0 1.9 2 0 0 2 2 1 0 AAA domain SdpI PF13630.1 gi|284166280|ref|YP_003404559.1| - 0.0032 17.1 1.4 0.0038 16.9 0.9 1.0 1 0 0 1 1 1 1 SdpI/YhfL protein family DUF308 PF03729.8 gi|284166280|ref|YP_003404559.1| - 0.76 9.8 6.0 1.5 8.8 4.2 1.5 1 1 0 1 1 1 0 Short repeat of unknown function (DUF308) PGPGW PF09656.5 gi|284166280|ref|YP_003404559.1| - 0.86 8.9 7.3 60 3.0 5.5 2.1 1 1 0 1 1 1 0 Putative transmembrane protein (PGPGW) DUF3185 PF11381.3 gi|284166280|ref|YP_003404559.1| - 0.87 9.3 3.6 1.5 8.6 0.9 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3185) DUF2892 PF11127.3 gi|284166280|ref|YP_003404559.1| - 1 9.2 5.1 1.2 8.9 3.4 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2892) OppC_N PF12911.2 gi|284166283|ref|YP_003404562.1| - 5.1 6.5 7.2 0.57 9.6 0.1 3.2 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C Herpes_pp38 PF04846.8 gi|284166284|ref|YP_003404563.1| - 0.051 12.8 0.4 0.11 11.8 0.3 1.5 1 0 0 1 1 1 0 Herpesvirus pp38 phosphoprotein Cpn60_TCP1 PF00118.19 gi|284166286|ref|YP_003404565.1| - 8.4e-153 509.4 6.2 9.6e-153 509.2 4.3 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF4559 PF15112.1 gi|284166286|ref|YP_003404565.1| - 2 7.4 3.9 5.1 6.1 0.3 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4559) Epimerase PF01370.16 gi|284166287|ref|YP_003404566.1| - 3.4e-48 164.1 0.0 4e-48 163.9 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|284166287|ref|YP_003404566.1| - 2.1e-18 66.1 0.0 2.5e-18 65.9 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|284166287|ref|YP_003404566.1| - 1.2e-15 58.0 0.0 1.7e-15 57.5 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|284166287|ref|YP_003404566.1| - 1.7e-15 56.7 0.0 2.2e-14 53.0 0.0 2.4 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.14 gi|284166287|ref|YP_003404566.1| - 6.7e-15 54.5 0.0 7.4e-15 54.3 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|284166287|ref|YP_003404566.1| - 4.6e-13 48.6 0.0 3.5e-08 32.6 0.0 2.3 1 1 1 2 2 2 2 Male sterility protein NmrA PF05368.8 gi|284166287|ref|YP_003404566.1| - 2.2e-07 30.4 0.0 1.8e-05 24.0 0.0 2.1 2 0 0 2 2 2 1 NmrA-like family adh_short PF00106.20 gi|284166287|ref|YP_003404566.1| - 2.1e-05 24.5 1.4 0.0002 21.2 0.2 2.5 2 1 0 2 2 2 1 short chain dehydrogenase TrkA_N PF02254.13 gi|284166287|ref|YP_003404566.1| - 0.0049 16.8 0.1 0.012 15.5 0.1 1.7 1 0 0 1 1 1 1 TrkA-N domain KR PF08659.5 gi|284166287|ref|YP_003404566.1| - 0.0061 16.2 0.1 0.15 11.7 0.0 2.4 2 0 0 2 2 2 1 KR domain Ldh_1_N PF00056.18 gi|284166287|ref|YP_003404566.1| - 0.023 14.5 0.0 0.035 13.9 0.0 1.2 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain Pentapeptide PF00805.17 gi|284166288|ref|YP_003404567.1| - 1.8e-18 65.3 12.8 1.1e-08 34.0 1.7 3.4 2 1 0 3 3 3 3 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.1 gi|284166288|ref|YP_003404567.1| - 3.4e-18 65.2 0.3 9.4e-11 41.3 0.0 2.1 1 1 1 2 2 2 2 Pentapeptide repeats (9 copies) Ion_trans_2 PF07885.11 gi|284166288|ref|YP_003404567.1| - 1e-13 50.7 3.3 2.1e-13 49.7 2.2 1.6 1 1 0 1 1 1 1 Ion channel Pentapeptide_3 PF13576.1 gi|284166288|ref|YP_003404567.1| - 6.5e-11 41.9 2.1 6.2e-05 22.7 0.2 2.7 1 1 1 2 2 2 2 Pentapeptide repeats (9 copies) Ion_trans PF00520.26 gi|284166288|ref|YP_003404567.1| - 0.097 11.9 0.2 0.18 11.0 0.1 1.4 1 1 0 1 1 1 0 Ion transport protein DUF159 PF02586.9 gi|284166289|ref|YP_003404568.1| - 2e-59 200.6 0.0 2.3e-59 200.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ACR, COG2135 OrfB_Zn_ribbon PF07282.6 gi|284166291|ref|YP_003404570.1| - 1.3e-21 76.0 1.5 2.3e-21 75.2 1.0 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|284166291|ref|YP_003404570.1| - 9.9e-16 57.8 0.0 1.6e-15 57.1 0.0 1.3 1 0 0 1 1 1 1 Probable transposase DZR PF12773.2 gi|284166291|ref|YP_003404570.1| - 0.15 11.9 3.3 0.32 10.8 2.3 1.5 1 0 0 1 1 1 0 Double zinc ribbon TM_helix PF05552.7 gi|284166292|ref|YP_003404571.1| - 0.045 13.4 0.3 0.092 12.4 0.2 1.5 1 0 0 1 1 1 0 Conserved TM helix Ribonuc_L-PSP PF01042.16 gi|284166293|ref|YP_003404572.1| - 1.6e-39 134.4 0.1 1.7e-39 134.2 0.1 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP YjgF_endoribonc PF14588.1 gi|284166293|ref|YP_003404572.1| - 0.14 12.0 0.1 0.28 11.0 0.0 1.5 1 1 0 1 1 1 0 YjgF/chorismate_mutase-like, putative endoribonuclease MARVEL PF01284.18 gi|284166294|ref|YP_003404573.1| - 0.022 14.5 3.6 0.028 14.2 2.5 1.1 1 0 0 1 1 1 0 Membrane-associating domain Tetraspannin PF00335.15 gi|284166294|ref|YP_003404573.1| - 0.25 10.6 2.7 0.27 10.4 1.9 1.1 1 0 0 1 1 1 0 Tetraspanin family InaF-motif PF15018.1 gi|284166294|ref|YP_003404573.1| - 1.1 8.7 10.9 3.3 7.2 2.0 2.3 2 0 0 2 2 2 0 TRP-interacting helix Sec20 PF03908.8 gi|284166294|ref|YP_003404573.1| - 5.4 6.8 5.4 1.8 8.3 0.5 2.0 2 0 0 2 2 2 0 Sec20 PALP PF00291.20 gi|284166295|ref|YP_003404574.1| - 6.1e-81 271.9 4.9 7.2e-81 271.7 3.4 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT_4 PF13291.1 gi|284166295|ref|YP_003404574.1| - 0.00022 21.4 0.0 0.0035 17.6 0.0 2.5 2 0 0 2 2 2 1 ACT domain ACT PF01842.20 gi|284166295|ref|YP_003404574.1| - 0.0013 18.1 0.0 0.0051 16.2 0.0 2.0 1 0 0 1 1 1 1 ACT domain AIG2 PF06094.7 gi|284166296|ref|YP_003404575.1| - 8.1e-15 55.1 0.0 1e-14 54.8 0.0 1.1 1 0 0 1 1 1 1 AIG2-like family AIG2_2 PF13772.1 gi|284166296|ref|YP_003404575.1| - 0.0031 17.5 0.0 0.0042 17.1 0.0 1.2 1 0 0 1 1 1 1 AIG2-like family Citrate_synt PF00285.16 gi|284166297|ref|YP_003404576.1| - 7.2e-134 446.0 0.0 8.1e-134 445.8 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase HTH_10 PF04967.7 gi|284166298|ref|YP_003404577.1| - 2.7e-21 74.8 0.3 8.5e-21 73.2 0.1 1.9 2 0 0 2 2 2 1 HTH DNA binding domain HTH_IclR PF09339.5 gi|284166298|ref|YP_003404577.1| - 0.00026 20.4 0.2 0.73 9.4 0.0 3.9 4 0 0 4 4 4 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|284166298|ref|YP_003404577.1| - 0.00028 20.4 0.1 0.1 12.2 0.0 2.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family GerE PF00196.14 gi|284166298|ref|YP_003404577.1| - 0.0017 17.6 0.4 0.019 14.2 0.3 2.3 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_20 PF12840.2 gi|284166298|ref|YP_003404577.1| - 0.017 14.9 0.1 0.061 13.1 0.0 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_22 PF13309.1 gi|284166298|ref|YP_003404577.1| - 0.019 14.6 0.0 0.036 13.8 0.0 1.5 1 0 0 1 1 1 0 HTH domain HTH_8 PF02954.14 gi|284166298|ref|YP_003404577.1| - 0.027 14.0 0.3 0.063 12.8 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family Sigma70_r4 PF04545.11 gi|284166298|ref|YP_003404577.1| - 0.032 13.5 0.4 0.21 10.9 0.0 2.5 3 0 0 3 3 3 0 Sigma-70, region 4 HTH_7 PF02796.10 gi|284166298|ref|YP_003404577.1| - 0.047 13.5 0.0 0.15 11.9 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase MarR_2 PF12802.2 gi|284166298|ref|YP_003404577.1| - 0.058 13.0 0.1 0.18 11.5 0.0 1.9 1 1 0 1 1 1 0 MarR family IER PF05760.7 gi|284166298|ref|YP_003404577.1| - 0.065 13.1 0.3 0.087 12.7 0.2 1.1 1 0 0 1 1 1 0 Immediate early response protein (IER) HTH_30 PF13556.1 gi|284166298|ref|YP_003404577.1| - 0.067 12.7 0.0 0.21 11.2 0.0 1.8 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain DUF134 PF02001.11 gi|284166298|ref|YP_003404577.1| - 0.097 12.5 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF134 FrhB_FdhB_C PF04432.8 gi|284166299|ref|YP_003404578.1| - 4.8e-27 94.3 0.0 4.8e-27 94.3 0.0 2.1 2 1 0 2 2 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|284166299|ref|YP_003404578.1| - 2.6e-18 65.6 0.1 6e-18 64.4 0.0 1.7 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_21 PF14697.1 gi|284166299|ref|YP_003404578.1| - 1.8e-09 37.3 8.6 1.8e-09 37.3 6.0 1.6 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|284166299|ref|YP_003404578.1| - 2.2e-08 34.3 8.1 2.2e-08 34.3 5.6 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|284166299|ref|YP_003404578.1| - 8.3e-08 32.3 10.5 9.1e-08 32.2 6.1 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|284166299|ref|YP_003404578.1| - 4.2e-07 29.5 12.4 0.00054 19.7 3.0 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|284166299|ref|YP_003404578.1| - 7.3e-07 28.8 14.2 3.3e-06 26.7 9.1 2.5 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|284166299|ref|YP_003404578.1| - 7.5e-06 25.3 19.2 8.1e-05 22.0 2.4 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|284166299|ref|YP_003404578.1| - 9.4e-06 26.2 8.0 0.0071 17.0 1.2 3.1 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|284166299|ref|YP_003404578.1| - 4.5e-05 23.4 20.5 0.0042 17.3 3.5 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|284166299|ref|YP_003404578.1| - 0.0012 18.6 3.9 0.0012 18.6 2.7 2.8 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_8 PF13183.1 gi|284166299|ref|YP_003404578.1| - 0.004 17.1 12.7 0.004 17.1 8.8 2.4 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|284166299|ref|YP_003404578.1| - 0.011 16.0 15.1 0.033 14.5 1.4 2.8 2 1 2 4 4 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|284166299|ref|YP_003404578.1| - 0.013 15.9 16.8 0.051 13.9 1.9 2.9 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|284166299|ref|YP_003404578.1| - 0.052 13.9 13.3 0.17 12.2 2.6 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|284166299|ref|YP_003404578.1| - 0.052 13.4 2.6 0.14 12.1 1.8 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|284166299|ref|YP_003404578.1| - 5 6.7 8.8 0.27 10.8 2.2 1.8 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_15 PF13459.1 gi|284166299|ref|YP_003404578.1| - 6.1 7.4 19.7 0.058 13.9 2.1 3.1 2 2 2 4 4 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|284166299|ref|YP_003404578.1| - 6.7 7.5 21.2 0.094 13.3 3.2 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain NIR_SIR PF01077.17 gi|284166300|ref|YP_003404579.1| - 5.8e-38 129.7 0.0 4.9e-29 100.7 0.0 2.3 2 0 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain Rhodanese PF00581.15 gi|284166300|ref|YP_003404579.1| - 4.4e-37 126.8 0.0 1.7e-19 70.2 0.0 2.5 2 0 0 2 2 2 2 Rhodanese-like domain NIR_SIR_ferr PF03460.12 gi|284166300|ref|YP_003404579.1| - 3.2e-33 113.1 1.4 5.5e-15 54.7 0.2 4.3 3 1 0 3 3 3 2 Nitrite/Sulfite reductase ferredoxin-like half domain DUF552 PF04472.7 gi|284166301|ref|YP_003404580.1| - 2.2e-19 69.1 3.2 3.1e-19 68.6 2.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF552) DUF2088 PF09861.4 gi|284166301|ref|YP_003404580.1| - 0.016 14.2 0.3 0.019 13.9 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF2088) DUF1028 PF06267.7 gi|284166302|ref|YP_003404581.1| - 3.6e-46 156.9 0.1 4.4e-46 156.7 0.1 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF1028) Porin_OmpL1 PF11389.3 gi|284166302|ref|YP_003404581.1| - 0.0098 14.9 0.0 0.015 14.3 0.0 1.3 1 0 0 1 1 1 1 Leptospira porin protein OmpL1 PIN_3 PF13470.1 gi|284166305|ref|YP_003404584.1| - 0.013 16.1 1.3 0.043 14.4 0.9 1.8 1 1 0 1 1 1 0 PIN domain IMPDH PF00478.20 gi|284166306|ref|YP_003404585.1| - 2.4e-116 388.5 3.4 3.3e-116 388.0 2.4 1.2 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain NMO PF03060.10 gi|284166306|ref|YP_003404585.1| - 5.3e-11 42.2 15.7 5.5e-09 35.6 10.9 2.3 1 1 0 1 1 1 1 Nitronate monooxygenase FMN_dh PF01070.13 gi|284166306|ref|YP_003404585.1| - 4.5e-08 32.3 5.9 6.8e-08 31.7 3.8 1.4 1 1 0 1 1 1 1 FMN-dependent dehydrogenase His_biosynth PF00977.16 gi|284166306|ref|YP_003404585.1| - 1e-06 28.1 1.2 0.00014 21.2 0.0 2.3 2 0 0 2 2 2 2 Histidine biosynthesis protein Glu_synthase PF01645.12 gi|284166306|ref|YP_003404585.1| - 0.0003 19.8 2.5 0.00073 18.5 1.6 1.7 2 0 0 2 2 2 1 Conserved region in glutamate synthase DHO_dh PF01180.16 gi|284166306|ref|YP_003404585.1| - 0.006 15.5 0.6 0.011 14.7 0.4 1.3 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase TMP-TENI PF02581.12 gi|284166306|ref|YP_003404585.1| - 0.018 14.1 2.2 0.032 13.3 1.5 1.5 1 0 0 1 1 1 0 Thiamine monophosphate synthase/TENI Aldolase PF01081.14 gi|284166306|ref|YP_003404585.1| - 0.031 13.4 4.1 0.056 12.5 0.9 2.2 1 1 1 2 2 2 0 KDPG and KHG aldolase Ribul_P_3_epim PF00834.14 gi|284166306|ref|YP_003404585.1| - 0.034 13.2 2.3 0.067 12.3 0.3 2.3 1 1 1 2 2 2 0 Ribulose-phosphate 3 epimerase family PcrB PF01884.12 gi|284166306|ref|YP_003404585.1| - 0.038 13.2 0.4 0.038 13.2 0.3 2.0 2 0 0 2 2 2 0 PcrB family Methyltransf_31 PF13847.1 gi|284166307|ref|YP_003404586.1| - 2.5e-34 118.0 0.0 3.7e-34 117.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|284166307|ref|YP_003404586.1| - 1.4e-23 83.1 0.0 3.5e-23 81.9 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|284166307|ref|YP_003404586.1| - 1.5e-17 64.1 0.0 3.4e-17 63.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|284166307|ref|YP_003404586.1| - 6e-17 61.5 0.0 1.1e-16 60.6 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|284166307|ref|YP_003404586.1| - 4.6e-15 55.8 0.1 2e-14 53.7 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|284166307|ref|YP_003404586.1| - 2.4e-14 53.3 0.0 3.9e-14 52.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|284166307|ref|YP_003404586.1| - 2.1e-11 44.1 0.0 4.2e-11 43.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|284166307|ref|YP_003404586.1| - 2.4e-10 40.4 0.3 7.5e-10 38.8 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain PCMT PF01135.14 gi|284166307|ref|YP_003404586.1| - 3e-09 36.7 0.0 4.1e-09 36.2 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|284166307|ref|YP_003404586.1| - 1.4e-07 31.0 0.0 3e-07 29.9 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|284166307|ref|YP_003404586.1| - 2.5e-06 26.8 0.0 3.7e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) CMAS PF02353.15 gi|284166307|ref|YP_003404586.1| - 1e-05 24.7 0.0 1.3e-05 24.4 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_8 PF05148.10 gi|284166307|ref|YP_003404586.1| - 0.00013 21.6 0.0 0.00029 20.5 0.0 1.5 1 0 0 1 1 1 1 Hypothetical methyltransferase UPF0020 PF01170.13 gi|284166307|ref|YP_003404586.1| - 0.00033 20.2 0.0 0.0005 19.6 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 ADH_zinc_N PF00107.21 gi|284166307|ref|YP_003404586.1| - 0.0023 17.4 0.1 0.03 13.8 0.0 2.6 1 1 1 2 2 2 1 Zinc-binding dehydrogenase Methyltransf_32 PF13679.1 gi|284166307|ref|YP_003404586.1| - 0.0038 16.9 0.0 0.0069 16.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_29 PF03141.11 gi|284166307|ref|YP_003404586.1| - 0.036 12.4 0.0 0.052 11.8 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_15 PF09445.5 gi|284166307|ref|YP_003404586.1| - 0.049 13.1 0.0 0.072 12.6 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_3 PF01596.12 gi|284166307|ref|YP_003404586.1| - 0.088 11.8 0.0 0.12 11.3 0.0 1.3 1 0 0 1 1 1 0 O-methyltransferase HTH_20 PF12840.2 gi|284166308|ref|YP_003404587.1| - 1.9e-15 56.3 0.6 3.6e-15 55.5 0.4 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|284166308|ref|YP_003404587.1| - 8.1e-15 54.2 0.2 1.2e-14 53.6 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|284166308|ref|YP_003404587.1| - 3.9e-05 22.9 0.1 7.3e-05 22.0 0.0 1.5 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|284166308|ref|YP_003404587.1| - 8.1e-05 22.2 0.0 0.00013 21.5 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PaaX PF07848.7 gi|284166308|ref|YP_003404587.1| - 0.00049 20.0 0.1 0.00073 19.4 0.0 1.4 1 0 0 1 1 1 1 PaaX-like protein Penicillinase_R PF03965.11 gi|284166308|ref|YP_003404587.1| - 0.0018 18.3 0.1 0.0066 16.5 0.0 1.8 2 0 0 2 2 2 1 Penicillinase repressor MarR_2 PF12802.2 gi|284166308|ref|YP_003404587.1| - 0.0031 17.1 0.6 0.0059 16.2 0.4 1.6 1 1 0 1 1 1 1 MarR family HTH_CodY PF08222.6 gi|284166308|ref|YP_003404587.1| - 0.012 14.9 0.0 0.022 14.0 0.0 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|284166308|ref|YP_003404587.1| - 0.012 15.3 0.0 0.026 14.3 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_27 PF13463.1 gi|284166308|ref|YP_003404587.1| - 0.021 15.1 0.1 0.047 14.0 0.0 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain TFIIE_alpha PF02002.12 gi|284166308|ref|YP_003404587.1| - 0.024 14.1 0.0 0.041 13.3 0.0 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_23 PF13384.1 gi|284166308|ref|YP_003404587.1| - 0.03 13.9 0.3 0.093 12.4 0.1 1.9 1 1 1 2 2 2 0 Homeodomain-like domain DUF2513 PF10711.4 gi|284166308|ref|YP_003404587.1| - 0.04 13.9 0.0 0.063 13.3 0.0 1.4 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) MarR PF01047.17 gi|284166308|ref|YP_003404587.1| - 0.058 13.1 0.0 0.091 12.4 0.0 1.3 1 0 0 1 1 1 0 MarR family DUF4123 PF13503.1 gi|284166308|ref|YP_003404587.1| - 0.082 12.8 0.0 0.1 12.5 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4123) Rrf2 PF02082.15 gi|284166308|ref|YP_003404587.1| - 0.099 12.7 0.0 0.14 12.2 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator Ham1p_like PF01725.11 gi|284166309|ref|YP_003404588.1| - 3e-48 163.7 0.0 3.9e-48 163.3 0.0 1.1 1 0 0 1 1 1 1 Ham1 family DUF3386 PF11866.3 gi|284166309|ref|YP_003404588.1| - 0.073 12.2 0.0 0.12 11.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3386) Pectinesterase PF01095.14 gi|284166310|ref|YP_003404589.1| - 1e-80 270.5 0.0 1.2e-80 270.3 0.0 1.0 1 0 0 1 1 1 1 Pectinesterase Beta_helix PF13229.1 gi|284166310|ref|YP_003404589.1| - 0.024 14.4 0.0 0.04 13.6 0.0 1.3 1 0 0 1 1 1 0 Right handed beta helix region HTH_10 PF04967.7 gi|284166312|ref|YP_003404591.1| - 4.4e-15 54.9 0.1 7.4e-15 54.2 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.7 gi|284166312|ref|YP_003404591.1| - 0.0084 15.5 0.6 2.6 7.5 0.0 2.4 2 0 0 2 2 2 2 Sigma-70, region 4 HTH_20 PF12840.2 gi|284166312|ref|YP_003404591.1| - 0.07 12.9 0.1 0.17 11.7 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2892 PF11127.3 gi|284166313|ref|YP_003404592.1| - 4.3e-13 48.8 0.7 4.8e-13 48.7 0.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) Peptidase_M22 PF00814.20 gi|284166314|ref|YP_003404593.1| - 3.2e-73 246.5 0.1 4.8e-72 242.6 0.1 2.0 1 1 0 1 1 1 1 Glycoprotease family Ribosomal_S27 PF01599.14 gi|284166315|ref|YP_003404594.1| - 1.2e-12 47.4 3.2 1.3e-12 47.3 2.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S27a FYVE PF01363.16 gi|284166315|ref|YP_003404594.1| - 0.0012 18.7 1.1 0.0014 18.5 0.8 1.1 1 0 0 1 1 1 1 FYVE zinc finger DZR PF12773.2 gi|284166315|ref|YP_003404594.1| - 0.0064 16.2 1.2 0.0086 15.8 0.9 1.2 1 0 0 1 1 1 1 Double zinc ribbon RNA_POL_M_15KD PF02150.11 gi|284166315|ref|YP_003404594.1| - 0.0076 15.9 1.1 0.011 15.3 0.7 1.3 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit Nudix_N_2 PF14803.1 gi|284166315|ref|YP_003404594.1| - 0.0079 15.8 4.0 0.34 10.6 0.1 2.1 2 0 0 2 2 2 2 Nudix N-terminal Ribosomal_L37e PF01907.14 gi|284166315|ref|YP_003404594.1| - 0.008 15.9 1.5 0.0098 15.6 1.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L37e TF_Zn_Ribbon PF08271.7 gi|284166315|ref|YP_003404594.1| - 0.019 14.2 2.9 0.026 13.8 1.6 1.6 1 1 0 1 1 1 0 TFIIB zinc-binding Prok-RING_1 PF14446.1 gi|284166315|ref|YP_003404594.1| - 0.019 14.6 0.7 0.025 14.3 0.5 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 IBR PF01485.16 gi|284166315|ref|YP_003404594.1| - 0.024 14.5 0.6 0.027 14.3 0.4 1.1 1 0 0 1 1 1 0 IBR domain zinc_ribbon_2 PF13240.1 gi|284166315|ref|YP_003404594.1| - 0.043 13.3 4.8 0.52 9.8 0.1 2.2 1 1 1 2 2 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|284166315|ref|YP_003404594.1| - 0.049 13.1 2.2 0.064 12.7 1.5 1.2 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zinc-ribbons_6 PF07191.7 gi|284166315|ref|YP_003404594.1| - 0.07 12.9 1.1 0.087 12.6 0.8 1.1 1 0 0 1 1 1 0 zinc-ribbons OrfB_Zn_ribbon PF07282.6 gi|284166315|ref|YP_003404594.1| - 0.09 12.4 1.3 0.11 12.1 0.9 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-RING_3 PF14369.1 gi|284166315|ref|YP_003404594.1| - 0.12 12.3 0.5 0.12 12.3 0.4 1.7 1 1 1 2 2 2 0 zinc-finger HypA PF01155.14 gi|284166315|ref|YP_003404594.1| - 0.14 11.8 1.3 0.15 11.7 0.9 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family RNHCP PF12647.2 gi|284166315|ref|YP_003404594.1| - 0.16 11.8 3.7 0.37 10.6 2.5 1.5 1 1 0 1 1 1 0 RNHCP domain zf-C2HC_2 PF13913.1 gi|284166315|ref|YP_003404594.1| - 0.16 11.6 3.2 0.32 10.7 0.1 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zf-H2C2_2 PF13465.1 gi|284166315|ref|YP_003404594.1| - 0.17 12.2 0.9 7.1 7.1 0.0 2.2 2 0 0 2 2 2 0 Zinc-finger double domain A2L_zn_ribbon PF08792.5 gi|284166315|ref|YP_003404594.1| - 0.2 11.1 3.3 7.1 6.2 0.3 2.2 1 1 1 2 2 2 0 A2L zinc ribbon domain zinc_ribbon_5 PF13719.1 gi|284166315|ref|YP_003404594.1| - 0.26 10.8 3.5 1.5 8.4 0.1 2.1 1 1 1 2 2 1 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|284166315|ref|YP_003404594.1| - 0.28 11.2 0.2 0.28 11.2 0.2 2.1 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_4 PF13717.1 gi|284166315|ref|YP_003404594.1| - 0.42 10.3 4.0 2.1 8.0 0.2 2.1 1 1 1 2 2 2 0 zinc-ribbon domain FeS PF04060.8 gi|284166315|ref|YP_003404594.1| - 0.43 10.2 3.8 0.75 9.4 0.5 2.1 2 0 0 2 2 2 0 Putative Fe-S cluster DUF2082 PF09855.4 gi|284166315|ref|YP_003404594.1| - 0.76 9.6 4.4 2.8 7.8 0.3 2.5 1 1 2 3 3 3 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-ribbon_3 PF13248.1 gi|284166315|ref|YP_003404594.1| - 0.81 8.9 6.6 5.5 6.3 4.6 2.1 1 1 0 1 1 1 0 zinc-ribbon domain XPA_N PF01286.13 gi|284166315|ref|YP_003404594.1| - 0.96 9.1 3.5 21 4.8 2.9 2.1 1 1 1 2 2 2 0 XPA protein N-terminal zf-CSL PF05207.8 gi|284166315|ref|YP_003404594.1| - 1.2 8.6 4.3 2.3 7.8 3.0 1.5 1 1 0 1 1 1 0 CSL zinc finger zf-C4_Topoisom PF01396.14 gi|284166315|ref|YP_003404594.1| - 1.3 8.5 4.4 13 5.4 3.0 2.0 1 1 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger Zn_Tnp_IS1595 PF12760.2 gi|284166315|ref|YP_003404594.1| - 1.6 8.6 6.2 22 4.9 4.4 2.0 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|284166315|ref|YP_003404594.1| - 1.9 8.0 8.7 8.6 5.9 1.2 2.3 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain NOB1_Zn_bind PF08772.6 gi|284166315|ref|YP_003404594.1| - 2.2 8.1 4.9 6.5 6.6 0.1 2.0 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Zn-ribbon_8 PF09723.5 gi|284166315|ref|YP_003404594.1| - 2.3 8.2 6.5 2.9 7.8 0.7 2.2 1 1 1 2 2 2 0 Zinc ribbon domain UPF0547 PF10571.4 gi|284166315|ref|YP_003404594.1| - 2.6 7.8 0.1 2.6 7.8 0.0 2.3 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 Auto_anti-p27 PF06677.7 gi|284166315|ref|YP_003404594.1| - 3.4 7.4 5.8 20 5.0 4.3 1.9 1 1 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-C2H2_3 PF13878.1 gi|284166315|ref|YP_003404594.1| - 3.9 7.1 5.7 15 5.2 0.6 2.1 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO zf-C2H2_4 PF13894.1 gi|284166315|ref|YP_003404594.1| - 4.5 7.8 5.1 1.2e+02 3.3 3.6 2.3 1 1 0 1 1 1 0 C2H2-type zinc finger Ribosomal_S24e PF01282.14 gi|284166316|ref|YP_003404595.1| - 3.6e-28 97.2 0.5 4.4e-28 96.8 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e BNR PF02012.15 gi|284166318|ref|YP_003404597.1| - 6.3e-07 28.2 14.3 0.09 12.6 1.4 4.7 4 0 0 4 4 4 4 BNR/Asp-box repeat PSII_BNR PF14870.1 gi|284166318|ref|YP_003404597.1| - 4.5e-05 22.5 0.0 0.53 9.2 0.0 3.2 1 1 2 3 3 3 2 Photosynthesis system II assembly factor YCF48 DUF4185 PF13810.1 gi|284166318|ref|YP_003404597.1| - 0.0017 17.3 2.4 1 8.1 0.0 3.6 3 1 1 4 4 4 2 Domain of unknown function (DUF4185) HATPase_c PF02518.21 gi|284166319|ref|YP_003404598.1| - 2.3e-17 62.7 0.0 1.3e-16 60.2 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|284166319|ref|YP_003404598.1| - 9e-08 32.4 0.4 2.7e-07 30.9 0.0 2.0 3 0 0 3 3 3 1 PAS domain PAS_4 PF08448.5 gi|284166319|ref|YP_003404598.1| - 8.6e-07 28.9 2.7 1.4e-06 28.3 0.9 2.1 1 1 1 2 2 2 1 PAS fold HATPase_c_2 PF13581.1 gi|284166319|ref|YP_003404598.1| - 9.1e-07 28.7 0.2 1.9e-06 27.7 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|284166319|ref|YP_003404598.1| - 0.00015 21.4 0.2 0.00033 20.3 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|284166319|ref|YP_003404598.1| - 0.054 13.3 0.0 0.12 12.2 0.0 1.6 1 0 0 1 1 1 0 PAS domain PAS_7 PF12860.2 gi|284166319|ref|YP_003404598.1| - 0.066 13.2 0.9 0.49 10.4 0.2 2.6 2 1 0 2 2 2 0 PAS fold YndJ PF14158.1 gi|284166322|ref|YP_003404601.1| - 3.4 6.6 22.7 3.6 6.5 5.6 2.1 1 1 1 2 2 2 0 YndJ-like protein DUF1469 PF07332.6 gi|284166322|ref|YP_003404601.1| - 6 6.6 29.7 40 3.9 4.5 2.4 1 1 2 3 3 3 0 Protein of unknown function (DUF1469) Rhomboid PF01694.17 gi|284166323|ref|YP_003404602.1| - 9.7e-20 71.0 17.4 9.7e-20 71.0 12.1 1.7 1 1 1 2 2 2 1 Rhomboid family DUF1751 PF08551.5 gi|284166323|ref|YP_003404602.1| - 0.0018 18.5 0.6 0.0018 18.5 0.4 2.5 2 1 1 3 3 3 2 Eukaryotic integral membrane protein (DUF1751) Ribosomal_S10 PF00338.17 gi|284166324|ref|YP_003404603.1| - 1.6e-28 98.3 0.0 1.8e-28 98.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e GTP_EFTU PF00009.22 gi|284166325|ref|YP_003404604.1| - 1.1e-57 194.5 0.0 1.4e-57 194.2 0.0 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|284166325|ref|YP_003404604.1| - 1e-30 105.8 0.1 3.9e-30 103.9 0.0 2.0 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|284166325|ref|YP_003404604.1| - 1.4e-17 63.5 1.9 4.3e-17 61.9 0.6 2.4 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|284166325|ref|YP_003404604.1| - 2.3e-07 30.7 0.0 4.4e-07 29.8 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|284166325|ref|YP_003404604.1| - 2.8e-05 24.6 0.1 0.00042 20.7 0.0 2.8 2 1 0 2 2 2 1 Miro-like protein GTP_EFTU_D4 PF14578.1 gi|284166325|ref|YP_003404604.1| - 0.00018 21.0 0.1 0.00078 19.0 0.0 2.0 2 0 0 2 2 2 1 Elongation factor Tu domain 4 Gtr1_RagA PF04670.7 gi|284166325|ref|YP_003404604.1| - 0.00062 18.9 0.1 0.048 12.8 0.0 2.2 2 0 0 2 2 2 1 Gtr1/RagA G protein conserved region Dynamin_N PF00350.18 gi|284166325|ref|YP_003404604.1| - 0.0034 17.2 0.1 0.86 9.4 0.0 2.4 1 1 0 1 1 1 1 Dynamin family SRPRB PF09439.5 gi|284166325|ref|YP_003404604.1| - 0.0085 15.3 0.0 0.3 10.2 0.0 2.2 1 1 0 1 1 1 1 Signal recognition particle receptor beta subunit FeoB_N PF02421.13 gi|284166325|ref|YP_003404604.1| - 0.013 14.7 0.0 0.26 10.5 0.1 2.5 2 1 0 2 2 2 0 Ferrous iron transport protein B CbiA PF01656.18 gi|284166325|ref|YP_003404604.1| - 0.076 12.4 0.1 0.16 11.3 0.0 1.5 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Septin PF00735.13 gi|284166325|ref|YP_003404604.1| - 0.081 11.9 0.0 0.17 10.8 0.0 1.4 1 0 0 1 1 1 0 Septin DUF1894 PF08979.6 gi|284166325|ref|YP_003404604.1| - 0.1 12.6 0.0 13 5.8 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1894) NifU PF01106.12 gi|284166326|ref|YP_003404605.1| - 2.3e-08 33.6 0.1 3.2e-08 33.2 0.1 1.2 1 0 0 1 1 1 1 NifU-like domain LVIVD PF08309.6 gi|284166327|ref|YP_003404606.1| - 4.6e-12 44.7 0.7 0.00018 20.4 0.1 5.6 6 0 0 6 6 6 5 LVIVD repeat Beta_propel PF09826.4 gi|284166327|ref|YP_003404606.1| - 0.00042 18.8 0.0 3.8 5.7 0.0 4.2 4 1 1 5 5 5 4 Beta propeller domain ROK PF00480.15 gi|284166328|ref|YP_003404607.1| - 3.3e-30 105.2 0.3 4.7e-30 104.7 0.2 1.2 1 0 0 1 1 1 1 ROK family BcrAD_BadFG PF01869.15 gi|284166328|ref|YP_003404607.1| - 0.0043 16.3 3.0 0.0082 15.4 2.1 1.7 1 1 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family FGGY_N PF00370.16 gi|284166328|ref|YP_003404607.1| - 0.031 13.5 0.1 0.064 12.5 0.1 1.6 1 1 0 1 1 1 0 FGGY family of carbohydrate kinases, N-terminal domain Usp PF00582.21 gi|284166330|ref|YP_003404609.1| - 3.7e-21 75.7 1.5 4.1e-21 75.6 1.0 1.0 1 0 0 1 1 1 1 Universal stress protein family HeH PF12949.2 gi|284166330|ref|YP_003404609.1| - 0.049 13.1 0.0 0.082 12.4 0.0 1.3 1 0 0 1 1 1 0 HeH/LEM domain Armet PF10208.4 gi|284166330|ref|YP_003404609.1| - 0.11 12.1 0.0 0.15 11.7 0.0 1.1 1 0 0 1 1 1 0 Degradation arginine-rich protein for mis-folding adh_short PF00106.20 gi|284166331|ref|YP_003404610.1| - 2.8e-22 79.4 0.2 3.3e-22 79.1 0.2 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|284166331|ref|YP_003404610.1| - 3.5e-12 46.6 0.0 4.4e-11 43.0 0.0 1.9 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|284166331|ref|YP_003404610.1| - 3.2e-07 30.1 0.1 4.4e-07 29.7 0.1 1.1 1 0 0 1 1 1 1 KR domain MOSC PF03473.12 gi|284166332|ref|YP_003404611.1| - 8.6e-15 54.3 0.1 1e-14 54.1 0.1 1.1 1 0 0 1 1 1 1 MOSC domain YqcI_YcgG PF08892.6 gi|284166333|ref|YP_003404612.1| - 1.3e-73 247.1 0.0 1.5e-73 246.9 0.0 1.0 1 0 0 1 1 1 1 YqcI/YcgG family Isochorismatase PF00857.15 gi|284166334|ref|YP_003404613.1| - 3.4e-36 124.7 0.0 4.2e-36 124.4 0.0 1.1 1 0 0 1 1 1 1 Isochorismatase family CTP_transf_2 PF01467.21 gi|284166335|ref|YP_003404614.1| - 1.6e-12 47.7 0.0 2.9e-12 46.9 0.0 1.4 1 1 0 1 1 1 1 Cytidylyltransferase Pantoate_ligase PF02569.10 gi|284166335|ref|YP_003404614.1| - 0.052 12.3 0.0 0.072 11.8 0.0 1.2 1 0 0 1 1 1 0 Pantoate-beta-alanine ligase HIGH_NTase1 PF05636.6 gi|284166335|ref|YP_003404614.1| - 0.073 12.0 0.0 0.088 11.8 0.0 1.1 1 0 0 1 1 1 0 HIGH Nucleotidyl Transferase Zip PF02535.17 gi|284166336|ref|YP_003404615.1| - 8.5e-21 74.2 18.9 1.8e-19 69.8 3.7 2.7 2 1 0 2 2 2 2 ZIP Zinc transporter DUF4131 PF13567.1 gi|284166336|ref|YP_003404615.1| - 9.3 5.6 9.3 7.6 5.8 1.2 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) MMPL PF03176.10 gi|284166337|ref|YP_003404616.1| - 1.7e-24 86.1 60.7 1.3e-15 56.9 19.5 3.8 3 1 0 3 3 3 2 MMPL family Patched PF02460.13 gi|284166337|ref|YP_003404616.1| - 5.2e-05 21.3 19.6 6.9e-05 20.9 1.3 2.6 3 0 0 3 3 3 2 Patched family Sterol-sensing PF12349.3 gi|284166337|ref|YP_003404616.1| - 5.9e-05 22.5 14.1 0.074 12.5 3.0 3.4 2 1 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation SecD_SecF PF02355.11 gi|284166337|ref|YP_003404616.1| - 0.00037 19.7 4.4 0.00037 19.7 3.0 2.5 2 0 0 2 2 2 2 Protein export membrane protein HALZ PF02183.13 gi|284166337|ref|YP_003404616.1| - 0.2 11.3 1.8 0.33 10.7 0.0 2.4 2 0 0 2 2 2 0 Homeobox associated leucine zipper DivIC PF04977.10 gi|284166337|ref|YP_003404616.1| - 0.81 9.2 7.4 10 5.7 0.7 3.9 3 1 0 3 3 3 0 Septum formation initiator V_ATPase_I PF01496.14 gi|284166337|ref|YP_003404616.1| - 0.98 7.1 2.3 16 3.2 0.0 2.1 2 0 0 2 2 2 0 V-type ATPase 116kDa subunit family DUF2939 PF11159.3 gi|284166338|ref|YP_003404617.1| - 0.098 12.8 0.4 0.56 10.4 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2939) Lycopene_cycl PF05834.7 gi|284166340|ref|YP_003404619.1| - 2.7e-10 39.7 0.0 6.5e-08 31.8 0.0 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein DAO PF01266.19 gi|284166340|ref|YP_003404619.1| - 2.9e-09 36.3 0.0 0.0018 17.2 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|284166340|ref|YP_003404619.1| - 6.4e-08 32.0 0.1 2.9e-06 26.6 0.0 2.1 1 1 0 1 1 1 1 FAD binding domain Trp_halogenase PF04820.9 gi|284166340|ref|YP_003404619.1| - 4.5e-07 28.8 0.0 0.0025 16.5 0.0 2.4 3 0 0 3 3 3 2 Tryptophan halogenase Pyr_redox_2 PF07992.9 gi|284166340|ref|YP_003404619.1| - 2.4e-05 24.3 0.1 6e-05 23.0 0.1 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|284166340|ref|YP_003404619.1| - 0.0002 20.5 3.3 0.013 14.5 1.9 2.9 2 1 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|284166340|ref|YP_003404619.1| - 0.00068 18.5 0.0 0.0017 17.2 0.0 1.5 1 1 0 1 1 1 1 FAD binding domain GIDA PF01134.17 gi|284166340|ref|YP_003404619.1| - 0.0012 17.7 0.0 0.81 8.4 0.0 2.1 2 0 0 2 2 2 2 Glucose inhibited division protein A Thi4 PF01946.12 gi|284166340|ref|YP_003404619.1| - 0.0013 17.8 0.1 0.0057 15.7 0.0 1.9 2 0 0 2 2 2 1 Thi4 family HI0933_like PF03486.9 gi|284166340|ref|YP_003404619.1| - 0.0026 16.3 0.0 0.0093 14.4 0.1 1.7 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|284166340|ref|YP_003404619.1| - 0.0083 16.1 0.1 0.025 14.5 0.1 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain NAD_binding_10 PF13460.1 gi|284166340|ref|YP_003404619.1| - 0.044 13.7 0.1 0.094 12.7 0.0 1.6 2 0 0 2 2 2 0 NADH(P)-binding TrkA_N PF02254.13 gi|284166340|ref|YP_003404619.1| - 0.087 12.8 0.0 0.2 11.6 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain Usp PF00582.21 gi|284166341|ref|YP_003404620.1| - 4.1e-30 104.8 3.5 4.7e-30 104.6 2.4 1.0 1 0 0 1 1 1 1 Universal stress protein family Acetyltransf_10 PF13673.1 gi|284166341|ref|YP_003404620.1| - 0.038 14.1 0.6 0.29 11.2 0.5 2.0 1 1 1 2 2 2 0 Acetyltransferase (GNAT) domain SnoaL_2 PF12680.2 gi|284166341|ref|YP_003404620.1| - 0.14 12.5 1.2 0.29 11.5 0.9 1.4 1 1 0 1 1 1 0 SnoaL-like domain NrfD PF03916.9 gi|284166342|ref|YP_003404621.1| - 5.9e-19 68.6 24.2 5.9e-19 68.6 16.7 1.8 2 0 0 2 2 2 1 Polysulphide reductase, NrfD DUF217 PF02697.9 gi|284166343|ref|YP_003404622.1| - 0.0045 17.2 0.1 0.0048 17.1 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 RHH_1 PF01402.16 gi|284166343|ref|YP_003404622.1| - 0.008 16.0 0.8 0.017 15.0 0.5 1.6 1 1 0 1 1 1 1 Ribbon-helix-helix protein, copG family DUF3021 PF11457.3 gi|284166345|ref|YP_003404624.1| - 1.4 8.7 5.0 0.41 10.5 1.2 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3021) Cu-oxidase_3 PF07732.10 gi|284166346|ref|YP_003404625.1| - 1.9e-08 34.0 0.1 4.9e-07 29.4 0.0 2.3 2 1 0 2 2 2 1 Multicopper oxidase Cu-oxidase_2 PF07731.9 gi|284166346|ref|YP_003404625.1| - 2.3e-07 30.3 0.0 1.4e-06 27.8 0.0 2.3 2 1 0 2 2 2 1 Multicopper oxidase Aminotran_5 PF00266.14 gi|284166347|ref|YP_003404626.1| - 8.5e-58 195.8 0.0 1.1e-57 195.5 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|284166347|ref|YP_003404626.1| - 0.00054 18.3 0.0 0.00078 17.8 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Usp PF00582.21 gi|284166348|ref|YP_003404627.1| - 1.5e-65 219.6 13.0 7.8e-34 116.8 1.5 2.5 2 1 0 2 2 2 2 Universal stress protein family Bac_thur_toxin PF01338.13 gi|284166348|ref|YP_003404627.1| - 0.02 14.1 0.0 0.044 13.0 0.0 1.5 2 0 0 2 2 2 0 Bacillus thuringiensis toxin FR47 PF08445.5 gi|284166348|ref|YP_003404627.1| - 0.068 12.9 0.6 12 5.7 0.0 2.5 2 0 0 2 2 2 0 FR47-like protein TMF_TATA_bd PF12325.3 gi|284166349|ref|YP_003404628.1| - 0.1 12.3 8.2 0.2 11.3 3.3 2.1 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding DUF3510 PF12022.3 gi|284166349|ref|YP_003404628.1| - 0.13 12.4 0.0 0.2 11.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3510) Pup PF05639.6 gi|284166349|ref|YP_003404628.1| - 0.27 11.7 0.3 0.27 11.7 0.2 2.7 2 1 0 2 2 2 0 Pup-like protein DUF848 PF05852.6 gi|284166349|ref|YP_003404628.1| - 0.47 10.2 6.2 0.69 9.7 1.5 2.0 1 1 1 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) HalX PF08663.5 gi|284166349|ref|YP_003404628.1| - 1.5 8.8 17.7 0.25 11.3 1.0 3.3 2 2 2 4 4 4 0 HalX domain DUF4164 PF13747.1 gi|284166349|ref|YP_003404628.1| - 3 8.0 8.2 6.1 7.0 2.5 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) ABC_tran PF00005.22 gi|284166350|ref|YP_003404629.1| - 2.7e-22 79.5 0.0 3.3e-12 46.8 0.0 4.3 3 1 0 3 3 3 3 ABC transporter SMC_N PF02463.14 gi|284166350|ref|YP_003404629.1| - 6.5e-13 48.4 0.1 0.0059 15.8 0.0 4.2 3 1 0 3 3 3 3 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|284166350|ref|YP_003404629.1| - 1.5e-09 37.2 0.0 0.00024 20.5 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_21 PF13304.1 gi|284166350|ref|YP_003404629.1| - 2.8e-09 37.3 5.2 0.0091 15.9 0.0 4.2 4 0 0 4 4 4 2 AAA domain AAA_16 PF13191.1 gi|284166350|ref|YP_003404629.1| - 6.1e-07 29.6 0.1 0.0093 15.9 0.0 3.2 4 0 0 4 4 3 2 AAA ATPase domain AAA_22 PF13401.1 gi|284166350|ref|YP_003404629.1| - 1.2e-06 28.6 0.3 0.057 13.5 0.0 3.7 4 0 0 4 4 4 2 AAA domain AAA_25 PF13481.1 gi|284166350|ref|YP_003404629.1| - 1.3e-06 27.9 0.1 0.094 12.1 0.0 3.5 4 0 0 4 4 3 2 AAA domain AAA_14 PF13173.1 gi|284166350|ref|YP_003404629.1| - 7.4e-06 25.8 0.0 0.063 13.1 0.0 3.7 4 0 0 4 4 3 2 AAA domain KaiC PF06745.8 gi|284166350|ref|YP_003404629.1| - 1.2e-05 24.5 0.1 0.0097 15.0 0.0 2.9 3 0 0 3 3 2 1 KaiC AAA_23 PF13476.1 gi|284166350|ref|YP_003404629.1| - 1.2e-05 25.7 0.0 0.014 15.7 0.0 2.7 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|284166350|ref|YP_003404629.1| - 7.8e-05 22.9 0.3 0.47 10.7 0.0 3.9 3 0 0 3 3 3 1 AAA domain AAA_10 PF12846.2 gi|284166350|ref|YP_003404629.1| - 0.00012 21.6 4.6 0.029 13.8 0.0 3.4 3 1 0 3 3 2 1 AAA-like domain DUF258 PF03193.11 gi|284166350|ref|YP_003404629.1| - 0.00018 20.7 0.0 0.56 9.3 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|284166350|ref|YP_003404629.1| - 0.00027 20.8 0.1 0.93 9.3 0.0 3.7 4 0 0 4 4 3 1 AAA domain DnaJ_CXXCXGXG PF00684.14 gi|284166350|ref|YP_003404629.1| - 0.00041 20.3 13.3 0.0031 17.5 0.7 3.8 4 1 0 4 4 3 1 DnaJ central domain cobW PF02492.14 gi|284166350|ref|YP_003404629.1| - 0.0021 17.5 0.1 0.18 11.1 0.0 2.4 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_17 PF13207.1 gi|284166350|ref|YP_003404629.1| - 0.0023 18.7 11.7 0.2 12.4 0.0 5.2 5 1 1 6 6 5 1 AAA domain APS_kinase PF01583.15 gi|284166350|ref|YP_003404629.1| - 0.0027 17.3 0.1 2.9 7.5 0.0 2.6 2 0 0 2 2 2 1 Adenylylsulphate kinase AAA_15 PF13175.1 gi|284166350|ref|YP_003404629.1| - 0.0035 16.4 0.0 1.1 8.2 0.0 3.0 4 0 0 4 4 4 1 AAA ATPase domain DUF2075 PF09848.4 gi|284166350|ref|YP_003404629.1| - 0.0042 16.1 0.1 1.2 8.0 0.0 2.4 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) Arch_ATPase PF01637.13 gi|284166350|ref|YP_003404629.1| - 0.0047 16.6 0.0 3.8 7.1 0.0 2.6 2 0 0 2 2 2 1 Archaeal ATPase Viral_helicase1 PF01443.13 gi|284166350|ref|YP_003404629.1| - 0.0092 15.5 0.0 0.48 9.9 0.0 2.4 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase NACHT PF05729.7 gi|284166350|ref|YP_003404629.1| - 0.016 14.8 0.0 0.67 9.5 0.0 2.4 2 0 0 2 2 2 0 NACHT domain MobB PF03205.9 gi|284166350|ref|YP_003404629.1| - 0.018 14.7 0.4 1 9.0 0.0 3.0 3 0 0 3 3 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.1 gi|284166350|ref|YP_003404629.1| - 0.029 14.1 0.0 9.2 6.0 0.0 3.2 2 0 0 2 2 2 0 Part of AAA domain RNA_helicase PF00910.17 gi|284166350|ref|YP_003404629.1| - 0.052 13.7 0.0 2 8.6 0.0 2.4 2 0 0 2 2 2 0 RNA helicase HypA PF01155.14 gi|284166350|ref|YP_003404629.1| - 0.052 13.2 3.8 3.5 7.3 0.0 3.8 4 0 0 4 4 4 0 Hydrogenase expression/synthesis hypA family MMR_HSR1 PF01926.18 gi|284166350|ref|YP_003404629.1| - 0.092 12.7 0.1 9.4 6.2 0.0 3.4 4 0 0 4 4 3 0 50S ribosome-binding GTPase AAA_30 PF13604.1 gi|284166350|ref|YP_003404629.1| - 0.097 12.2 0.0 9.8 5.7 0.0 2.6 2 0 0 2 2 2 0 AAA domain Miro PF08477.8 gi|284166350|ref|YP_003404629.1| - 0.1 13.0 0.1 15 6.1 0.0 2.8 2 0 0 2 2 2 0 Miro-like protein PRK PF00485.13 gi|284166350|ref|YP_003404629.1| - 0.11 12.0 0.0 3.3 7.2 0.0 2.4 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family NB-ARC PF00931.17 gi|284166350|ref|YP_003404629.1| - 0.2 10.4 0.1 2.5 6.8 0.0 2.6 3 0 0 3 3 3 0 NB-ARC domain Bunya_NS-S PF01104.12 gi|284166350|ref|YP_003404629.1| - 0.3 10.5 0.0 0.54 9.7 0.0 1.3 1 0 0 1 1 1 0 Bunyavirus non-structural protein NS-s Zn-ribbon_8 PF09723.5 gi|284166350|ref|YP_003404629.1| - 0.37 10.7 16.4 19 5.2 0.7 4.6 4 0 0 4 4 4 0 Zinc ribbon domain Zn_Tnp_IS91 PF14319.1 gi|284166350|ref|YP_003404629.1| - 0.67 9.4 1.9 1.8 8.0 0.0 2.6 3 0 0 3 3 2 0 Transposase zinc-binding domain DUF87 PF01935.12 gi|284166350|ref|YP_003404629.1| - 0.93 9.2 0.0 0.93 9.2 0.0 2.9 4 0 0 4 4 2 0 Domain of unknown function DUF87 DZR PF12773.2 gi|284166350|ref|YP_003404629.1| - 2.3 8.1 10.4 4.5 7.1 0.3 3.9 4 0 0 4 4 4 0 Double zinc ribbon YhfH PF14149.1 gi|284166350|ref|YP_003404629.1| - 3.9 7.3 6.3 9.7 6.0 0.0 3.5 3 0 0 3 3 3 0 YhfH-like protein Acetyltransf_1 PF00583.19 gi|284166352|ref|YP_003404631.1| - 1.7e-15 56.8 0.0 2.5e-15 56.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|284166352|ref|YP_003404631.1| - 3.2e-08 33.7 0.2 6.1e-08 32.7 0.1 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|284166352|ref|YP_003404631.1| - 5e-08 32.9 0.0 8.8e-08 32.2 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|284166352|ref|YP_003404631.1| - 1.9e-07 30.7 0.0 4.9e-07 29.4 0.0 1.6 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|284166352|ref|YP_003404631.1| - 2.2e-05 24.4 0.0 0.00012 22.1 0.0 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|284166352|ref|YP_003404631.1| - 0.0025 17.6 0.1 0.0041 17.0 0.1 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|284166352|ref|YP_003404631.1| - 0.0064 16.3 0.1 0.092 12.6 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|284166352|ref|YP_003404631.1| - 0.0091 16.1 0.1 0.017 15.2 0.1 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain RNB PF00773.14 gi|284166353|ref|YP_003404632.1| - 1.3e-78 264.5 0.0 2.1e-76 257.3 0.0 2.1 1 1 0 1 1 1 1 RNB domain zf-C3HC PF07967.8 gi|284166354|ref|YP_003404633.1| - 0.0036 17.0 0.7 0.0041 16.8 0.5 1.0 1 0 0 1 1 1 1 C3HC zinc finger-like Cytochrome_C7 PF14522.1 gi|284166354|ref|YP_003404633.1| - 0.14 11.7 5.1 0.24 11.0 3.6 1.4 1 1 0 1 1 1 0 Cytochrome c7 Cytochrom_NNT PF03264.9 gi|284166354|ref|YP_003404633.1| - 0.31 10.4 4.2 1.6 8.0 3.6 1.7 1 1 1 2 2 2 0 NapC/NirT cytochrome c family, N-terminal region PUA PF01472.15 gi|284166355|ref|YP_003404634.1| - 8.5e-18 63.8 0.8 1.3e-17 63.2 0.5 1.3 1 0 0 1 1 1 1 PUA domain Beta-lactamase PF00144.19 gi|284166356|ref|YP_003404635.1| - 6.6e-73 245.5 1.8 7.6e-73 245.3 1.3 1.0 1 0 0 1 1 1 1 Beta-lactamase Rad21_Rec8 PF04824.11 gi|284166357|ref|YP_003404636.1| - 0.14 11.4 0.1 0.19 10.9 0.0 1.4 1 0 0 1 1 1 0 Conserved region of Rad21 / Rec8 like protein OppC_N PF12911.2 gi|284166357|ref|YP_003404636.1| - 0.16 11.3 4.4 0.18 11.2 3.1 1.1 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C MoeA_N PF03453.12 gi|284166358|ref|YP_003404637.1| - 1.7e-42 144.5 3.1 3.1e-42 143.6 2.2 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|284166358|ref|YP_003404637.1| - 1.6e-27 95.7 0.1 2.5e-27 95.0 0.1 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|284166358|ref|YP_003404637.1| - 4.9e-18 64.8 2.3 4.4e-17 61.8 0.0 3.4 3 0 0 3 3 3 1 MoeA C-terminal region (domain IV) HSP20 PF00011.16 gi|284166359|ref|YP_003404638.1| - 2.4e-12 46.6 0.0 2.8e-12 46.3 0.0 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ABC1 PF03109.11 gi|284166360|ref|YP_003404639.1| - 2.1e-23 82.5 0.1 1.1e-16 60.8 0.0 2.7 3 0 0 3 3 3 2 ABC1 family APH PF01636.18 gi|284166360|ref|YP_003404639.1| - 2.3e-05 24.2 1.9 0.0011 18.7 0.0 3.3 3 1 1 4 4 4 1 Phosphotransferase enzyme family RIO1 PF01163.17 gi|284166360|ref|YP_003404639.1| - 0.00019 20.8 0.0 0.00045 19.6 0.0 1.6 2 0 0 2 2 2 1 RIO1 family WaaY PF06176.6 gi|284166360|ref|YP_003404639.1| - 0.079 12.1 0.1 0.14 11.3 0.1 1.4 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) Pkinase PF00069.20 gi|284166360|ref|YP_003404639.1| - 0.22 10.6 0.0 0.38 9.8 0.0 1.3 1 0 0 1 1 1 0 Protein kinase domain MR_MLE_C PF13378.1 gi|284166361|ref|YP_003404640.1| - 0.002 18.0 0.0 0.0038 17.1 0.0 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like eIF-5a PF01287.15 gi|284166362|ref|YP_003404641.1| - 8.5e-06 25.6 2.4 2e-05 24.4 1.7 1.7 1 1 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.7 gi|284166362|ref|YP_003404641.1| - 0.0012 18.6 0.0 0.028 14.2 0.0 2.1 2 0 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain EFP PF01132.15 gi|284166362|ref|YP_003404641.1| - 0.0044 16.6 0.2 0.0074 15.9 0.1 1.5 1 0 0 1 1 1 1 Elongation factor P (EF-P) OB domain KOW PF00467.24 gi|284166362|ref|YP_003404641.1| - 0.023 14.4 0.0 1.2 9.0 0.0 2.3 2 0 0 2 2 2 0 KOW motif Arginase PF00491.16 gi|284166363|ref|YP_003404642.1| - 3.1e-57 193.9 0.6 3.6e-57 193.7 0.4 1.0 1 0 0 1 1 1 1 Arginase family COX1 PF00115.15 gi|284166364|ref|YP_003404643.1| - 4.1e-134 447.5 68.3 4.1e-134 447.5 47.4 2.9 2 1 0 3 3 3 1 Cytochrome C and Quinol oxidase polypeptide I COX3 PF00510.13 gi|284166364|ref|YP_003404643.1| - 3.2e-21 75.9 15.7 3.2e-21 75.9 10.9 3.4 3 1 0 3 3 3 1 Cytochrome c oxidase subunit III NIF3 PF01784.13 gi|284166365|ref|YP_003404644.1| - 2.5e-51 174.5 0.0 3e-51 174.3 0.0 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) AP_endonuc_2 PF01261.19 gi|284166365|ref|YP_003404644.1| - 0.018 14.3 0.7 0.066 12.4 0.1 1.9 1 1 0 2 2 2 0 Xylose isomerase-like TIM barrel DUF2977 PF11192.3 gi|284166367|ref|YP_003404646.1| - 0.049 13.4 0.4 0.13 12.0 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2977) DS PF01916.12 gi|284166368|ref|YP_003404647.1| - 1.5e-81 273.8 0.0 1.8e-81 273.5 0.0 1.1 1 0 0 1 1 1 1 Deoxyhypusine synthase Lactamase_B_2 PF12706.2 gi|284166370|ref|YP_003404649.1| - 3.5e-20 72.3 0.1 4.9e-20 71.9 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|284166370|ref|YP_003404649.1| - 4.6e-11 42.7 0.0 1.8e-10 40.7 0.0 2.0 2 1 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|284166370|ref|YP_003404649.1| - 0.00016 21.4 8.1 0.00093 18.8 5.5 2.4 1 1 1 2 2 2 1 Metallo-beta-lactamase superfamily Pyr_redox_2 PF07992.9 gi|284166371|ref|YP_003404650.1| - 1.9e-26 93.1 0.0 2.6e-26 92.7 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|284166371|ref|YP_003404650.1| - 8.9e-09 35.6 0.1 1.5e-07 31.6 0.1 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|284166371|ref|YP_003404650.1| - 4.4e-08 32.4 5.9 7.7e-06 25.0 0.3 3.1 3 0 0 3 3 3 1 FAD binding domain DAO PF01266.19 gi|284166371|ref|YP_003404650.1| - 1.1e-07 31.1 9.0 1.5e-06 27.3 6.2 2.9 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|284166371|ref|YP_003404650.1| - 3.2e-05 22.5 0.1 7.6e-05 21.3 0.1 1.6 2 0 0 2 2 2 1 HI0933-like protein GIDA PF01134.17 gi|284166371|ref|YP_003404650.1| - 4.1e-05 22.6 0.2 8.5e-05 21.5 0.1 1.5 1 0 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|284166371|ref|YP_003404650.1| - 7.3e-05 22.7 0.4 0.00028 20.8 0.1 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|284166371|ref|YP_003404650.1| - 0.00051 19.1 0.0 0.0011 18.1 0.0 1.5 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.2 gi|284166371|ref|YP_003404650.1| - 0.0006 19.0 2.1 0.00096 18.3 0.3 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase K_oxygenase PF13434.1 gi|284166371|ref|YP_003404650.1| - 0.00076 18.5 0.0 0.02 13.8 0.0 2.0 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_3 PF01494.14 gi|284166371|ref|YP_003404650.1| - 0.0016 17.5 0.2 0.0031 16.6 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain DJ-1_PfpI PF01965.19 gi|284166371|ref|YP_003404650.1| - 0.0021 17.5 0.2 0.057 12.8 0.0 2.3 2 0 0 2 2 2 1 DJ-1/PfpI family Pyr_redox PF00070.22 gi|284166371|ref|YP_003404650.1| - 0.0092 16.3 0.5 0.023 15.0 0.3 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.16 gi|284166371|ref|YP_003404650.1| - 0.068 12.7 0.1 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Pyridox_oxidase PF01243.15 gi|284166372|ref|YP_003404651.1| - 2e-15 56.5 0.0 2.7e-15 56.1 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.2 gi|284166372|ref|YP_003404651.1| - 8.1e-14 51.6 0.4 9.5e-14 51.4 0.3 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF385 PF04075.9 gi|284166372|ref|YP_003404651.1| - 0.049 13.5 0.6 0.094 12.6 0.4 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF385) Gas_vesicle PF00741.13 gi|284166373|ref|YP_003404652.1| - 6.7e-18 64.2 7.9 8.9e-18 63.8 5.5 1.2 1 0 0 1 1 1 1 Gas vesicle protein PhoU_div PF01865.11 gi|284166373|ref|YP_003404652.1| - 0.015 14.4 0.2 0.02 14.0 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function DUF47 Glycos_transf_2 PF00535.21 gi|284166374|ref|YP_003404653.1| - 8e-29 100.4 0.0 1e-28 100.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|284166374|ref|YP_003404653.1| - 2.3e-17 63.5 0.0 6.3e-17 62.1 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|284166374|ref|YP_003404653.1| - 6.8e-10 38.4 0.0 4.6e-09 35.7 0.0 1.9 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|284166374|ref|YP_003404653.1| - 4.3e-09 35.8 0.0 9.1e-09 34.8 0.0 1.5 1 1 1 2 2 2 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.1 gi|284166374|ref|YP_003404653.1| - 3.1e-06 27.0 0.0 9.3e-06 25.4 0.0 1.8 2 1 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_tranf_2_4 PF13704.1 gi|284166374|ref|YP_003404653.1| - 8.1e-06 26.0 0.1 2.6e-05 24.4 0.1 1.8 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_5 PF13712.1 gi|284166374|ref|YP_003404653.1| - 0.012 14.9 0.0 0.016 14.4 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase like family HTH_IclR PF09339.5 gi|284166376|ref|YP_003404655.1| - 1.4e-05 24.5 0.0 2.6e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|284166376|ref|YP_003404655.1| - 2.2e-05 24.0 0.0 4.1e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|284166376|ref|YP_003404655.1| - 0.0011 18.5 0.0 0.0022 17.6 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|284166376|ref|YP_003404655.1| - 0.0012 18.5 0.0 0.0023 17.5 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|284166376|ref|YP_003404655.1| - 0.0016 17.8 0.0 0.0027 17.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|284166376|ref|YP_003404655.1| - 0.0029 17.9 0.0 0.0069 16.6 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|284166376|ref|YP_003404655.1| - 0.0036 17.0 0.0 0.008 15.9 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain DUF1724 PF08350.5 gi|284166376|ref|YP_003404655.1| - 0.019 14.5 0.0 0.036 13.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1724) HTH_7 PF02796.10 gi|284166376|ref|YP_003404655.1| - 0.026 14.3 0.0 0.054 13.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_5 PF01022.15 gi|284166376|ref|YP_003404655.1| - 0.078 12.6 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_AsnC-type PF13404.1 gi|284166376|ref|YP_003404655.1| - 0.098 12.2 0.5 0.24 10.9 0.3 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain DUF1330 PF07045.6 gi|284166377|ref|YP_003404656.1| - 6.2e-13 48.3 0.1 9.7e-13 47.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1330) TAT_signal PF10518.4 gi|284166377|ref|YP_003404656.1| - 0.11 12.5 1.5 0.19 11.8 1.0 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence CBAH PF02275.13 gi|284166378|ref|YP_003404657.1| - 3e-47 161.5 0.0 4.4e-46 157.7 0.0 1.9 1 1 0 1 1 1 1 Linear amide C-N hydrolases, choloylglycine hydrolase family DHHA1 PF02272.14 gi|284166379|ref|YP_003404658.1| - 4.2e-15 55.1 0.1 7.7e-15 54.3 0.1 1.4 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.15 gi|284166379|ref|YP_003404658.1| - 8.1e-15 54.7 0.0 1.3e-14 54.0 0.0 1.4 1 0 0 1 1 1 1 DHH family PMT_2 PF13231.1 gi|284166380|ref|YP_003404659.1| - 2.6e-27 95.6 7.8 2.6e-27 95.6 5.4 3.3 3 0 0 3 3 3 2 Dolichyl-phosphate-mannose-protein mannosyltransferase Glyco_hydro_2_C PF02836.12 gi|284166381|ref|YP_003404660.1| - 1.3e-35 122.7 0.0 2e-35 122.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, TIM barrel domain Glyco_hydro_2_N PF02837.13 gi|284166381|ref|YP_003404660.1| - 1.2e-31 109.5 0.1 2.7e-31 108.3 0.0 1.7 2 0 0 2 2 2 1 Glycosyl hydrolases family 2, sugar binding domain Glyco_hydro_2 PF00703.16 gi|284166381|ref|YP_003404660.1| - 2.2e-22 79.5 0.1 6.4e-22 78.0 0.0 1.9 1 0 0 1 1 1 1 Glycosyl hydrolases family 2 BetaGal_dom4_5 PF13364.1 gi|284166381|ref|YP_003404660.1| - 0.034 14.4 0.0 0.092 13.0 0.0 1.7 1 0 0 1 1 1 0 Beta-galactosidase jelly roll domain RNA_pol_L PF01193.19 gi|284166381|ref|YP_003404660.1| - 0.097 11.8 0.0 0.14 11.2 0.0 1.5 1 1 0 1 1 1 0 RNA polymerase Rpb3/Rpb11 dimerisation domain AIM24 PF01987.12 gi|284166382|ref|YP_003404661.1| - 4.3e-44 150.5 0.2 4.9e-44 150.3 0.2 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 Pea-VEAacid PF08111.6 gi|284166382|ref|YP_003404661.1| - 0.058 13.5 0.5 0.18 11.9 0.4 1.8 1 0 0 1 1 1 0 Pea-VEAacid family Rad9_Rad53_bind PF08605.5 gi|284166382|ref|YP_003404661.1| - 0.14 11.9 0.0 0.22 11.3 0.0 1.3 1 0 0 1 1 1 0 Fungal Rad9-like Rad53-binding VIT1 PF01988.14 gi|284166384|ref|YP_003404663.1| - 0.1 12.0 0.0 0.1 12.0 0.0 1.1 1 0 0 1 1 1 0 VIT family DUF3537 PF12056.3 gi|284166384|ref|YP_003404663.1| - 0.11 11.1 0.2 0.11 11.1 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3537) Arylsulfotrans PF05935.6 gi|284166385|ref|YP_003404664.1| - 4.6e-17 61.6 6.8 6.1e-12 44.8 0.3 3.8 2 1 0 4 4 4 3 Arylsulfotransferase (ASST) Arylsulfotran_2 PF14269.1 gi|284166385|ref|YP_003404664.1| - 2e-12 46.8 2.1 7e-10 38.5 1.3 3.9 2 1 0 2 2 2 1 Arylsulfotransferase (ASST) PQQ_2 PF13360.1 gi|284166385|ref|YP_003404664.1| - 8.1e-12 45.0 1.9 6.8e-05 22.4 0.0 3.2 2 1 0 2 2 2 2 PQQ-like domain PQQ PF01011.16 gi|284166385|ref|YP_003404664.1| - 7e-09 34.7 0.2 0.045 13.3 0.0 4.4 4 0 0 4 4 4 3 PQQ enzyme repeat RHS_repeat PF05593.9 gi|284166385|ref|YP_003404664.1| - 0.0012 18.9 2.0 1.4 9.2 0.0 4.8 5 0 0 5 5 5 1 RHS Repeat NHL PF01436.16 gi|284166385|ref|YP_003404664.1| - 0.0023 17.7 1.5 2.1 8.4 0.0 3.7 2 2 1 3 3 3 2 NHL repeat DUF504 PF04457.7 gi|284166385|ref|YP_003404664.1| - 0.032 14.3 10.8 1.7 8.8 0.0 4.7 5 0 0 5 5 5 0 Protein of unknown function (DUF504) DUF389 PF04087.9 gi|284166386|ref|YP_003404665.1| - 3.7e-25 88.4 22.6 3.7e-25 88.4 15.6 2.6 3 0 0 3 3 3 1 Domain of unknown function (DUF389) Ion_trans PF00520.26 gi|284166387|ref|YP_003404666.1| - 0.87 8.7 6.4 2.6 7.2 4.5 1.8 1 1 1 2 2 2 0 Ion transport protein DUF457 PF04307.9 gi|284166388|ref|YP_003404667.1| - 5.1e-11 42.1 8.9 6.3e-11 41.8 6.2 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF2534 PF10749.4 gi|284166388|ref|YP_003404667.1| - 0.11 12.4 2.4 1.7 8.6 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2534) Zn_dep_PLPC PF00882.13 gi|284166388|ref|YP_003404667.1| - 0.14 11.7 0.1 0.24 11.0 0.0 1.4 1 1 0 1 1 1 0 Zinc dependent phospholipase C HTH_10 PF04967.7 gi|284166389|ref|YP_003404668.1| - 1.9e-19 68.9 0.3 3.5e-19 68.1 0.1 1.6 2 0 0 2 2 2 1 HTH DNA binding domain Sigma70_r4_2 PF08281.7 gi|284166389|ref|YP_003404668.1| - 5.1e-06 25.8 0.7 5.3e-05 22.6 0.0 2.6 2 1 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.11 gi|284166389|ref|YP_003404668.1| - 0.00013 21.2 0.4 0.00027 20.1 0.3 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|284166389|ref|YP_003404668.1| - 0.0031 17.1 0.6 0.023 14.3 0.0 2.7 4 0 0 4 4 4 1 MarR family GerE PF00196.14 gi|284166389|ref|YP_003404668.1| - 0.0049 16.1 0.0 0.19 11.1 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family LexA_DNA_bind PF01726.11 gi|284166389|ref|YP_003404668.1| - 0.007 15.9 0.2 0.041 13.4 0.1 2.2 2 1 0 2 2 2 1 LexA DNA binding domain Fe_dep_repress PF01325.14 gi|284166389|ref|YP_003404668.1| - 0.009 15.9 0.0 0.025 14.4 0.0 1.8 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.1 gi|284166389|ref|YP_003404668.1| - 0.01 15.2 0.1 0.027 13.8 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|284166389|ref|YP_003404668.1| - 0.02 14.5 0.1 0.11 12.2 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|284166389|ref|YP_003404668.1| - 0.026 14.8 0.0 0.13 12.6 0.0 2.1 2 0 0 2 2 2 0 Winged helix DNA-binding domain Sigma70_r3 PF04539.11 gi|284166389|ref|YP_003404668.1| - 0.068 13.0 0.2 0.15 11.9 0.1 1.6 1 0 0 1 1 1 0 Sigma-70 region 3 HTH_AsnC-type PF13404.1 gi|284166389|ref|YP_003404668.1| - 0.083 12.4 0.2 0.2 11.2 0.2 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain DUF998 PF06197.8 gi|284166390|ref|YP_003404669.1| - 0.044 13.1 20.2 0.098 11.9 13.7 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF998) DUF1206 PF06724.6 gi|284166390|ref|YP_003404669.1| - 0.11 12.2 0.4 0.11 12.2 0.3 3.1 3 1 1 4 4 4 0 Domain of Unknown Function (DUF1206) VKOR PF07884.9 gi|284166390|ref|YP_003404669.1| - 0.19 11.5 1.6 0.29 10.9 1.1 1.3 1 0 0 1 1 1 0 Vitamin K epoxide reductase family 2TM PF13239.1 gi|284166390|ref|YP_003404669.1| - 1.4 9.0 4.6 23 5.1 1.4 2.6 2 1 1 3 3 3 0 2TM domain zf-C3HC4_3 PF13920.1 gi|284166391|ref|YP_003404670.1| - 0.00094 18.8 3.4 0.35 10.5 0.1 2.2 2 0 0 2 2 2 2 Zinc finger, C3HC4 type (RING finger) DZR PF12773.2 gi|284166391|ref|YP_003404670.1| - 0.00097 18.9 10.9 0.049 13.4 7.6 2.3 1 1 0 1 1 1 1 Double zinc ribbon zf-C2H2_3 PF13878.1 gi|284166391|ref|YP_003404670.1| - 0.0082 15.6 9.4 0.25 10.9 0.6 2.6 2 1 1 3 3 3 2 zinc-finger of acetyl-transferase ESCO zf-Mss51 PF13824.1 gi|284166391|ref|YP_003404670.1| - 0.0087 15.8 9.8 0.45 10.4 0.2 3.1 1 1 2 3 3 3 2 Zinc-finger of mitochondrial splicing suppressor 51 Lar_restr_allev PF14354.1 gi|284166391|ref|YP_003404670.1| - 0.018 15.3 11.1 0.15 12.3 0.9 3.2 1 1 2 3 3 3 0 Restriction alleviation protein Lar zf-Di19 PF05605.7 gi|284166391|ref|YP_003404670.1| - 0.033 14.3 1.3 7.8 6.7 0.1 2.4 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zinc_ribbon_2 PF13240.1 gi|284166391|ref|YP_003404670.1| - 0.041 13.3 4.3 0.041 13.3 3.0 2.4 2 1 0 2 2 2 0 zinc-ribbon domain zf-RING_2 PF13639.1 gi|284166391|ref|YP_003404670.1| - 0.058 13.2 4.0 3.3 7.6 0.3 2.2 2 0 0 2 2 2 0 Ring finger domain zf-C3HC4_2 PF13923.1 gi|284166391|ref|YP_003404670.1| - 0.1 12.6 6.0 1.7 8.7 0.3 2.2 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) DUF35_N PF12172.3 gi|284166391|ref|YP_003404670.1| - 0.12 12.3 10.2 0.14 12.0 1.4 2.4 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-ribbon_3 PF13248.1 gi|284166391|ref|YP_003404670.1| - 0.15 11.2 11.8 0.077 12.2 2.4 2.7 3 0 0 3 3 3 0 zinc-ribbon domain HypA PF01155.14 gi|284166391|ref|YP_003404670.1| - 0.16 11.6 7.0 1.9 8.2 0.6 2.2 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family zf-RING_5 PF14634.1 gi|284166391|ref|YP_003404670.1| - 0.48 10.2 8.0 1.5 8.6 1.0 2.3 2 0 0 2 2 2 0 zinc-RING finger domain GFA PF04828.9 gi|284166391|ref|YP_003404670.1| - 0.5 10.3 7.6 4 7.4 0.3 2.9 1 1 2 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme DnaJ_CXXCXGXG PF00684.14 gi|284166391|ref|YP_003404670.1| - 0.64 10.1 7.3 4.5 7.4 5.1 2.0 1 1 1 2 2 2 0 DnaJ central domain Spt4 PF06093.8 gi|284166391|ref|YP_003404670.1| - 1.3 8.9 3.5 3.6 7.5 0.2 2.2 2 0 0 2 2 2 0 Spt4/RpoE2 zinc finger FdhE PF04216.7 gi|284166391|ref|YP_003404670.1| - 1.4 8.5 10.5 1.8 8.2 5.7 2.1 1 1 1 2 2 2 0 Protein involved in formate dehydrogenase formation FYDLN_acid PF09538.5 gi|284166391|ref|YP_003404670.1| - 1.6 9.3 12.9 7.9 7.1 2.5 2.2 1 1 1 2 2 2 0 Protein of unknown function (FYDLN_acid) TF_Zn_Ribbon PF08271.7 gi|284166391|ref|YP_003404670.1| - 3.4 7.0 11.0 6.8 6.0 0.9 3.5 3 1 0 3 3 3 0 TFIIB zinc-binding zf-C3HC4 PF00097.20 gi|284166391|ref|YP_003404670.1| - 4.3 7.0 7.1 7.9 6.2 0.7 2.3 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Prok-RING_1 PF14446.1 gi|284166391|ref|YP_003404670.1| - 4.5 7.0 10.9 2.1 8.1 0.8 2.8 2 2 1 3 3 3 0 Prokaryotic RING finger family 1 DAO PF01266.19 gi|284166392|ref|YP_003404671.1| - 6.7e-28 97.6 0.0 9.4e-28 97.1 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Mqo PF06039.10 gi|284166392|ref|YP_003404671.1| - 1.3e-23 82.9 0.0 1.8e-22 79.1 0.0 1.9 1 1 0 1 1 1 1 Malate:quinone oxidoreductase (Mqo) Pyr_redox_3 PF13738.1 gi|284166392|ref|YP_003404671.1| - 0.00029 20.9 0.1 0.0089 16.0 0.1 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|284166392|ref|YP_003404671.1| - 0.0017 18.1 0.2 2.2 8.0 0.1 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding NAD_binding_8 PF13450.1 gi|284166392|ref|YP_003404671.1| - 0.0023 17.9 0.3 0.018 15.0 0.0 2.6 4 0 0 4 4 4 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|284166392|ref|YP_003404671.1| - 0.0028 16.2 0.2 0.024 13.1 0.0 2.0 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.19 gi|284166392|ref|YP_003404671.1| - 0.003 16.4 0.0 0.0041 16.0 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.12 gi|284166392|ref|YP_003404671.1| - 0.026 13.5 1.5 2.9 6.8 0.1 2.6 2 1 1 3 3 3 0 Thi4 family Pyr_redox PF00070.22 gi|284166392|ref|YP_003404671.1| - 0.032 14.6 0.2 13 6.2 0.0 2.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|284166392|ref|YP_003404671.1| - 0.047 13.5 0.2 0.92 9.3 0.1 2.2 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|284166392|ref|YP_003404671.1| - 0.063 12.1 0.0 2 7.2 0.0 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein TrkH PF02386.11 gi|284166393|ref|YP_003404672.1| - 1.4e-49 168.6 17.3 4.8e-49 166.8 8.6 2.1 2 0 0 2 2 2 2 Cation transport protein Form-deh_trans PF09163.6 gi|284166393|ref|YP_003404672.1| - 0.51 9.8 4.3 4.6 6.8 0.1 3.4 2 0 0 2 2 2 0 Formate dehydrogenase N, transmembrane Rubredoxin PF00301.15 gi|284166394|ref|YP_003404673.1| - 0.026 14.3 0.3 0.03 14.1 0.2 1.3 1 0 0 1 1 1 0 Rubredoxin DUF4428 PF14471.1 gi|284166394|ref|YP_003404673.1| - 0.06 13.1 0.3 0.071 12.8 0.2 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4428) A2L_zn_ribbon PF08792.5 gi|284166394|ref|YP_003404673.1| - 0.068 12.6 0.4 0.095 12.1 0.3 1.3 1 0 0 1 1 1 0 A2L zinc ribbon domain MarR_2 PF12802.2 gi|284166395|ref|YP_003404674.1| - 3.3e-05 23.4 0.3 0.0001 21.9 0.2 1.9 1 0 0 1 1 1 1 MarR family Crp PF00325.15 gi|284166395|ref|YP_003404674.1| - 0.0012 18.2 0.1 0.0031 16.9 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family Trp_repressor PF01371.14 gi|284166395|ref|YP_003404674.1| - 0.0016 18.3 0.0 0.0044 16.8 0.0 1.7 1 0 0 1 1 1 1 Trp repressor protein HTH_5 PF01022.15 gi|284166395|ref|YP_003404674.1| - 0.0019 17.8 0.0 0.005 16.4 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|284166395|ref|YP_003404674.1| - 0.0036 16.8 2.2 0.0047 16.4 0.1 2.3 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|284166395|ref|YP_003404674.1| - 0.0038 17.5 0.5 0.014 15.6 0.0 2.3 3 0 0 3 3 3 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|284166395|ref|YP_003404674.1| - 0.0042 16.8 0.7 0.009 15.7 0.0 1.9 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_23 PF13384.1 gi|284166395|ref|YP_003404674.1| - 0.0085 15.7 0.9 0.029 14.0 0.1 2.3 2 0 0 2 2 2 1 Homeodomain-like domain HTH_20 PF12840.2 gi|284166395|ref|YP_003404674.1| - 0.01 15.6 2.6 0.24 11.2 0.1 3.3 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_28 PF13518.1 gi|284166395|ref|YP_003404674.1| - 0.01 15.8 0.1 0.028 14.4 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.17 gi|284166395|ref|YP_003404674.1| - 0.017 14.7 0.0 0.036 13.7 0.0 1.5 1 0 0 1 1 1 0 MarR family DUF1724 PF08350.5 gi|284166395|ref|YP_003404674.1| - 0.023 14.1 0.0 0.041 13.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1724) HTH_24 PF13412.1 gi|284166395|ref|YP_003404674.1| - 0.034 13.5 0.0 0.072 12.4 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_45 PF14947.1 gi|284166395|ref|YP_003404674.1| - 0.11 12.3 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_31 PF13560.1 gi|284166395|ref|YP_003404674.1| - 0.59 10.3 5.4 0.25 11.5 0.3 2.9 3 0 0 3 3 3 0 Helix-turn-helix domain EamA PF00892.15 gi|284166396|ref|YP_003404675.1| - 1.3e-30 106.0 28.0 4.2e-18 65.6 3.4 2.1 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|284166396|ref|YP_003404675.1| - 1.4e-08 34.8 4.3 1.4e-08 34.8 3.0 4.0 2 2 2 4 4 4 2 Multidrug resistance efflux transporter TPT PF03151.11 gi|284166396|ref|YP_003404675.1| - 0.0058 16.2 17.7 0.022 14.4 1.2 2.7 2 2 0 2 2 2 2 Triose-phosphate Transporter family UPF0546 PF10639.4 gi|284166396|ref|YP_003404675.1| - 0.023 14.5 6.8 1.4 8.7 0.1 2.5 2 1 0 2 2 2 0 Uncharacterised protein family UPF0546 eRF1_2 PF03464.10 gi|284166397|ref|YP_003404676.1| - 3.2e-21 76.0 0.0 4.7e-21 75.4 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|284166397|ref|YP_003404676.1| - 4.4e-15 55.9 0.0 4.3e-14 52.7 0.0 2.5 2 1 0 2 2 2 1 eRF1 domain 3 SpoU_sub_bind PF08032.7 gi|284166397|ref|YP_003404676.1| - 0.08 13.1 0.0 0.35 11.0 0.0 2.0 2 0 0 2 2 2 0 RNA 2'-O ribose methyltransferase substrate binding Response_reg PF00072.19 gi|284166398|ref|YP_003404677.1| - 5.6e-17 61.7 0.4 6.5e-17 61.5 0.2 1.1 1 0 0 1 1 1 1 Response regulator receiver domain Methyltransf_26 PF13659.1 gi|284166398|ref|YP_003404677.1| - 0.13 12.2 0.0 0.43 10.6 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain DUF2171 PF09939.4 gi|284166399|ref|YP_003404678.1| - 0.00079 19.3 0.9 0.0063 16.4 0.6 2.0 1 1 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2171) PRC PF05239.11 gi|284166400|ref|YP_003404679.1| - 0.012 15.4 0.3 0.022 14.6 0.2 1.4 1 0 0 1 1 1 0 PRC-barrel domain zf-C4pol PF14260.1 gi|284166401|ref|YP_003404680.1| - 0.039 13.9 0.2 0.056 13.4 0.1 1.2 1 0 0 1 1 1 0 C4-type zinc-finger of DNA polymerase delta DZR PF12773.2 gi|284166401|ref|YP_003404680.1| - 0.086 12.6 4.7 0.087 12.6 0.5 2.0 1 1 0 1 1 1 0 Double zinc ribbon PDR_CDR PF06422.7 gi|284166401|ref|YP_003404680.1| - 0.12 12.0 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 CDR ABC transporter Abhydrolase_6 PF12697.2 gi|284166402|ref|YP_003404681.1| - 2.6e-36 125.6 0.2 3e-36 125.4 0.1 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|284166402|ref|YP_003404681.1| - 2.5e-21 75.9 0.0 3.8e-21 75.3 0.0 1.3 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|284166402|ref|YP_003404681.1| - 2.6e-15 56.6 0.0 3.8e-10 39.7 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold UPF0227 PF05728.7 gi|284166402|ref|YP_003404681.1| - 0.00023 20.9 0.0 0.0007 19.3 0.0 1.6 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0227) Ser_hydrolase PF06821.8 gi|284166402|ref|YP_003404681.1| - 0.0025 17.4 0.0 0.78 9.3 0.0 2.1 2 0 0 2 2 2 2 Serine hydrolase Ndr PF03096.9 gi|284166402|ref|YP_003404681.1| - 0.0032 15.9 0.0 0.0042 15.5 0.0 1.1 1 0 0 1 1 1 1 Ndr family Esterase PF00756.15 gi|284166402|ref|YP_003404681.1| - 0.0044 16.4 0.0 0.0056 16.1 0.0 1.3 1 0 0 1 1 1 1 Putative esterase AAA_25 PF13481.1 gi|284166402|ref|YP_003404681.1| - 0.014 14.8 0.0 0.92 8.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain DLH PF01738.13 gi|284166402|ref|YP_003404681.1| - 0.025 13.8 0.0 0.59 9.3 0.0 2.1 2 0 0 2 2 2 0 Dienelactone hydrolase family PE-PPE PF08237.6 gi|284166402|ref|YP_003404681.1| - 0.054 12.9 0.0 0.073 12.4 0.0 1.2 1 0 0 1 1 1 0 PE-PPE domain Virul_fac_BrkB PF03631.10 gi|284166403|ref|YP_003404682.1| - 2.9e-43 148.1 25.0 2.9e-43 148.1 17.3 1.9 2 0 0 2 2 2 1 Virulence factor BrkB DUF2207 PF09972.4 gi|284166403|ref|YP_003404682.1| - 0.2 10.1 0.0 0.2 10.1 0.0 3.2 3 1 0 3 3 3 0 Predicted membrane protein (DUF2207) Sigma70_ner PF04546.8 gi|284166403|ref|YP_003404682.1| - 1.1 8.7 5.5 1.9 8.0 3.8 1.3 1 0 0 1 1 1 0 Sigma-70, non-essential region CDC45 PF02724.9 gi|284166403|ref|YP_003404682.1| - 4.3 5.2 5.1 6.2 4.7 3.5 1.1 1 0 0 1 1 1 0 CDC45-like protein TAT_signal PF10518.4 gi|284166404|ref|YP_003404683.1| - 0.0003 20.5 4.5 0.0003 20.5 3.1 3.5 3 0 0 3 3 3 1 TAT (twin-arginine translocation) pathway signal sequence Cu-oxidase_3 PF07732.10 gi|284166405|ref|YP_003404684.1| - 3.8e-22 78.2 3.5 4e-07 29.7 0.0 6.1 6 0 0 6 6 6 5 Multicopper oxidase Cu-oxidase_2 PF07731.9 gi|284166405|ref|YP_003404684.1| - 8.5e-10 38.2 16.6 0.00054 19.4 0.0 4.6 4 0 0 4 4 4 3 Multicopper oxidase FG-GAP PF01839.18 gi|284166405|ref|YP_003404684.1| - 0.0053 16.4 3.6 0.03 14.0 1.3 2.8 2 0 0 2 2 2 1 FG-GAP repeat Zn_Tnp_IS1595 PF12760.2 gi|284166406|ref|YP_003404685.1| - 0.00057 19.6 0.4 0.72 9.7 0.1 2.1 2 0 0 2 2 2 2 Transposase zinc-ribbon domain zf-IS66 PF13005.2 gi|284166406|ref|YP_003404685.1| - 0.063 13.2 5.1 0.091 12.7 0.2 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Auto_anti-p27 PF06677.7 gi|284166406|ref|YP_003404685.1| - 0.088 12.5 1.5 8.1 6.3 0.1 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF35_N PF12172.3 gi|284166406|ref|YP_003404685.1| - 0.098 12.6 3.0 4 7.4 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-TFIIB PF13453.1 gi|284166406|ref|YP_003404685.1| - 0.12 11.6 2.5 0.33 10.1 0.0 2.1 2 0 0 2 2 2 0 Transcription factor zinc-finger zf-ISL3 PF14690.1 gi|284166406|ref|YP_003404685.1| - 0.28 11.2 3.4 3 7.9 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-HYPF PF07503.7 gi|284166406|ref|YP_003404685.1| - 0.4 10.1 4.1 1.9 7.9 0.3 2.2 2 0 0 2 2 2 0 HypF finger Zn-ribbon_8 PF09723.5 gi|284166406|ref|YP_003404685.1| - 0.65 9.9 3.8 9.1 6.3 0.2 2.2 2 0 0 2 2 2 0 Zinc ribbon domain Rubredoxin PF00301.15 gi|284166406|ref|YP_003404685.1| - 0.99 9.3 5.7 2.1 8.2 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin UPF0547 PF10571.4 gi|284166406|ref|YP_003404685.1| - 1.3 8.7 0.1 1.3 8.7 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-NADH-PPase PF09297.6 gi|284166406|ref|YP_003404685.1| - 5.9 6.4 6.2 2.6 7.6 0.2 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain TRM PF02005.11 gi|284166407|ref|YP_003404686.1| - 8.8e-90 301.3 0.0 9.7e-90 301.1 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_26 PF13659.1 gi|284166407|ref|YP_003404686.1| - 6.9e-07 29.3 0.9 6.9e-07 29.3 0.6 1.6 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|284166407|ref|YP_003404686.1| - 1.1e-06 28.1 0.0 1.8e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|284166407|ref|YP_003404686.1| - 1.4e-05 24.6 0.0 2.1e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|284166407|ref|YP_003404686.1| - 0.00011 21.4 0.1 0.00016 20.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Zn-ribbon_8 PF09723.5 gi|284166407|ref|YP_003404686.1| - 0.00032 20.5 1.2 0.00076 19.3 0.8 1.7 1 0 0 1 1 1 1 Zinc ribbon domain Methyltransf_18 PF12847.2 gi|284166407|ref|YP_003404686.1| - 0.0012 19.4 0.2 0.0028 18.2 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|284166407|ref|YP_003404686.1| - 0.006 16.1 0.0 0.0094 15.5 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_12 PF08242.7 gi|284166407|ref|YP_003404686.1| - 0.0066 16.8 0.1 0.018 15.5 0.1 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|284166407|ref|YP_003404686.1| - 0.049 14.1 0.0 0.14 12.6 0.0 1.8 1 0 0 1 1 1 0 Methyltransferase domain Toxin_55 PF15606.1 gi|284166407|ref|YP_003404686.1| - 0.12 12.3 0.0 1 9.3 0.0 2.2 2 0 0 2 2 2 0 Putative toxin 55 HypA PF01155.14 gi|284166407|ref|YP_003404686.1| - 0.13 11.9 0.1 0.31 10.7 0.0 1.6 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family zf-C3HC4_2 PF13923.1 gi|284166407|ref|YP_003404686.1| - 0.14 12.1 2.4 0.16 11.9 0.6 1.9 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) TehB PF03848.9 gi|284166407|ref|YP_003404686.1| - 0.17 11.0 0.1 0.28 10.3 0.1 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB GATase PF00117.23 gi|284166408|ref|YP_003404687.1| - 4.5e-22 78.4 0.0 6.4e-22 77.9 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|284166408|ref|YP_003404687.1| - 1.2e-06 28.1 0.0 6.7e-06 25.6 0.0 2.0 1 1 0 1 1 1 1 Peptidase C26 GATase_3 PF07685.9 gi|284166408|ref|YP_003404687.1| - 0.038 13.5 0.1 0.12 11.9 0.0 1.9 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain HATPase_c PF02518.21 gi|284166409|ref|YP_003404688.1| - 5.7e-29 100.0 0.0 2.5e-28 97.9 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|284166409|ref|YP_003404688.1| - 7.4e-11 41.8 0.2 2.4e-10 40.2 0.1 2.0 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain Tektin PF03148.9 gi|284166409|ref|YP_003404688.1| - 0.018 13.5 1.3 0.031 12.8 0.9 1.2 1 0 0 1 1 1 0 Tektin family LOH1CR12 PF10158.4 gi|284166409|ref|YP_003404688.1| - 0.039 13.7 0.0 0.072 12.8 0.0 1.3 1 0 0 1 1 1 0 Tumour suppressor protein HATPase_c_2 PF13581.1 gi|284166409|ref|YP_003404688.1| - 0.053 13.3 0.1 0.14 11.9 0.1 1.8 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain CorA PF01544.13 gi|284166409|ref|YP_003404688.1| - 0.097 11.6 0.4 0.19 10.7 0.3 1.4 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein zf-C4H2 PF10146.4 gi|284166409|ref|YP_003404688.1| - 0.11 12.4 0.3 0.16 11.9 0.2 1.1 1 0 0 1 1 1 0 Zinc finger-containing protein HATPase_c_3 PF13589.1 gi|284166409|ref|YP_003404688.1| - 0.14 11.7 0.0 0.31 10.7 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DASH_Dad1 PF08649.5 gi|284166409|ref|YP_003404688.1| - 0.16 11.6 0.1 0.37 10.5 0.1 1.5 1 0 0 1 1 1 0 DASH complex subunit Dad1 IncA PF04156.9 gi|284166409|ref|YP_003404688.1| - 0.22 11.0 0.7 0.54 9.8 0.5 1.7 1 1 0 1 1 1 0 IncA protein SWIM PF04434.12 gi|284166410|ref|YP_003404689.1| - 0.011 15.1 4.6 0.085 12.3 3.2 2.0 1 1 0 1 1 1 0 SWIM zinc finger Cdc6_C PF09079.6 gi|284166411|ref|YP_003404690.1| - 7.9e-19 67.1 0.1 2.4e-18 65.6 0.0 1.9 2 0 0 2 2 2 1 CDC6, C terminal AAA_22 PF13401.1 gi|284166411|ref|YP_003404690.1| - 4.1e-12 46.3 0.5 1.6e-11 44.4 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|284166411|ref|YP_003404690.1| - 3.5e-11 43.4 1.0 2.5e-10 40.6 0.0 2.4 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|284166411|ref|YP_003404690.1| - 6.6e-07 29.5 0.1 2.9e-06 27.4 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|284166411|ref|YP_003404690.1| - 2.9e-05 23.8 0.0 6.1e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 Archaeal ATPase DUF815 PF05673.8 gi|284166411|ref|YP_003404690.1| - 3.3e-05 22.9 0.0 5.7e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Sigma54_activat PF00158.21 gi|284166411|ref|YP_003404690.1| - 0.00017 21.1 0.0 0.00034 20.1 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_2 PF07724.9 gi|284166411|ref|YP_003404690.1| - 0.00074 19.4 0.1 0.0014 18.5 0.1 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) Sigma54_activ_2 PF14532.1 gi|284166411|ref|YP_003404690.1| - 0.00099 19.1 0.0 0.0059 16.6 0.0 2.1 2 0 0 2 2 2 1 Sigma-54 interaction domain NACHT PF05729.7 gi|284166411|ref|YP_003404690.1| - 0.0025 17.4 0.0 0.0088 15.7 0.0 1.8 2 0 0 2 2 2 1 NACHT domain DEAD PF00270.24 gi|284166411|ref|YP_003404690.1| - 0.0025 17.3 1.7 0.21 11.0 1.2 2.3 1 1 0 1 1 1 1 DEAD/DEAH box helicase KAP_NTPase PF07693.9 gi|284166411|ref|YP_003404690.1| - 0.0037 16.3 0.1 0.011 14.7 0.0 1.8 2 1 0 2 2 2 1 KAP family P-loop domain DUF87 PF01935.12 gi|284166411|ref|YP_003404690.1| - 0.0076 16.0 0.4 0.25 11.1 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function DUF87 PhoH PF02562.11 gi|284166411|ref|YP_003404690.1| - 0.012 14.9 0.1 3.9 6.6 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein IstB_IS21 PF01695.12 gi|284166411|ref|YP_003404690.1| - 0.014 14.8 0.2 0.055 12.8 0.0 2.0 2 1 0 2 2 2 0 IstB-like ATP binding protein KaiC PF06745.8 gi|284166411|ref|YP_003404690.1| - 0.016 14.3 0.1 0.036 13.1 0.1 1.6 1 1 0 1 1 1 0 KaiC AAA_5 PF07728.9 gi|284166411|ref|YP_003404690.1| - 0.023 14.4 0.6 0.19 11.4 0.4 2.3 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) NB-ARC PF00931.17 gi|284166411|ref|YP_003404690.1| - 0.024 13.4 0.0 0.039 12.8 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_10 PF12846.2 gi|284166411|ref|YP_003404690.1| - 0.029 13.8 0.1 0.23 10.8 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain DUF2075 PF09848.4 gi|284166411|ref|YP_003404690.1| - 0.038 12.9 0.0 0.054 12.4 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) FtsK_SpoIIIE PF01580.13 gi|284166411|ref|YP_003404690.1| - 0.043 13.2 0.0 0.27 10.6 0.0 2.1 2 0 0 2 2 2 0 FtsK/SpoIIIE family Zot PF05707.7 gi|284166411|ref|YP_003404690.1| - 0.055 12.9 0.0 0.099 12.0 0.0 1.3 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) RNA_helicase PF00910.17 gi|284166411|ref|YP_003404690.1| - 0.057 13.6 0.1 0.34 11.0 0.0 2.2 2 0 0 2 2 2 0 RNA helicase T2SE PF00437.15 gi|284166411|ref|YP_003404690.1| - 0.062 12.1 0.2 0.16 10.8 0.0 1.7 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_24 PF13479.1 gi|284166411|ref|YP_003404690.1| - 0.13 11.7 0.3 0.23 11.0 0.2 1.5 1 1 0 1 1 1 0 AAA domain GATase PF00117.23 gi|284166412|ref|YP_003404691.1| - 3.6e-33 114.6 0.0 4.1e-33 114.4 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|284166412|ref|YP_003404691.1| - 3.1e-11 43.1 0.0 5.9e-11 42.2 0.0 1.4 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.14 gi|284166412|ref|YP_003404691.1| - 2.3e-07 30.6 0.0 4e-07 29.8 0.0 1.3 1 1 0 1 1 1 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.8 gi|284166412|ref|YP_003404691.1| - 0.00012 21.6 1.0 0.0014 18.0 0.7 2.4 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.19 gi|284166412|ref|YP_003404691.1| - 0.0024 17.3 0.0 0.0046 16.4 0.0 1.4 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_5 PF13507.1 gi|284166412|ref|YP_003404691.1| - 0.13 11.1 0.0 0.59 8.9 0.0 2.2 2 1 0 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain DUF4066 PF13278.1 gi|284166412|ref|YP_003404691.1| - 0.13 11.4 0.0 0.47 9.7 0.0 1.7 2 0 0 2 2 2 0 Putative amidotransferase UDG PF03167.14 gi|284166413|ref|YP_003404692.1| - 2.8e-34 117.7 0.0 3.5e-34 117.4 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Eclosion PF04736.7 gi|284166413|ref|YP_003404692.1| - 0.065 12.6 0.2 6 6.3 0.0 2.2 2 0 0 2 2 2 0 Eclosion hormone DUF99 PF01949.11 gi|284166414|ref|YP_003404693.1| - 1.7e-47 160.9 0.0 2.1e-47 160.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 Lactamase_B PF00753.22 gi|284166416|ref|YP_003404695.1| - 1.5e-13 50.8 12.5 1.8e-13 50.6 8.2 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Poly_export PF02563.11 gi|284166416|ref|YP_003404695.1| - 0.014 15.1 0.0 0.11 12.2 0.0 2.3 2 1 0 2 2 2 0 Polysaccharide biosynthesis/export protein Lactamase_B_3 PF13483.1 gi|284166416|ref|YP_003404695.1| - 0.051 13.2 3.0 0.17 11.5 2.1 1.9 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|284166416|ref|YP_003404695.1| - 0.27 10.7 2.9 0.68 9.4 2.0 1.7 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Ribosomal_L40e PF01020.12 gi|284166417|ref|YP_003404696.1| - 5.4e-06 25.9 3.9 6.2e-06 25.7 2.7 1.1 1 0 0 1 1 1 1 Ribosomal L40e family DZR PF12773.2 gi|284166417|ref|YP_003404696.1| - 0.00019 21.1 1.1 0.00022 20.9 0.8 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|284166417|ref|YP_003404696.1| - 0.00053 19.1 1.7 0.00067 18.7 1.2 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|284166417|ref|YP_003404696.1| - 0.0011 18.3 1.1 0.0015 17.9 0.7 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|284166417|ref|YP_003404696.1| - 0.049 13.1 6.5 0.12 11.8 4.5 1.6 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-DHHC PF01529.15 gi|284166417|ref|YP_003404696.1| - 0.095 12.0 0.8 0.099 12.0 0.6 1.0 1 0 0 1 1 1 0 DHHC palmitoyltransferase DUF2296 PF10058.4 gi|284166417|ref|YP_003404696.1| - 0.13 12.0 1.7 1.6 8.5 0.0 2.1 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) zf-CHY PF05495.7 gi|284166417|ref|YP_003404696.1| - 0.32 11.1 2.6 0.49 10.5 1.8 1.3 1 1 0 1 1 1 0 CHY zinc finger zf-RanBP PF00641.13 gi|284166417|ref|YP_003404696.1| - 0.8 8.8 3.7 3.4 6.8 1.9 2.0 1 1 1 2 2 2 0 Zn-finger in Ran binding protein and others OrfB_Zn_ribbon PF07282.6 gi|284166418|ref|YP_003404697.1| - 6.3e-23 80.2 3.5 1.5e-22 78.9 2.4 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|284166418|ref|YP_003404697.1| - 8.3e-11 41.7 0.1 1.2e-10 41.1 0.0 1.3 1 0 0 1 1 1 1 Probable transposase DUF367 PF04034.8 gi|284166419|ref|YP_003404698.1| - 3e-43 146.4 0.0 3.6e-43 146.1 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF367) RLI PF04068.10 gi|284166419|ref|YP_003404698.1| - 5.5e-07 29.0 0.1 9e-07 28.3 0.1 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI HTH_24 PF13412.1 gi|284166420|ref|YP_003404699.1| - 1.2e-12 47.0 0.1 2.4e-12 46.0 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|284166420|ref|YP_003404699.1| - 9e-11 41.1 0.4 3.5e-10 39.2 0.1 2.3 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain TrkA_C PF02080.16 gi|284166420|ref|YP_003404699.1| - 1.4e-10 40.5 0.8 1.4e-10 40.5 0.5 2.1 2 0 0 2 2 2 1 TrkA-C domain HTH_11 PF08279.7 gi|284166420|ref|YP_003404699.1| - 5.8e-09 35.4 0.0 1.4e-08 34.2 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|284166420|ref|YP_003404699.1| - 2.2e-05 24.1 0.0 6.4e-05 22.6 0.0 1.8 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|284166420|ref|YP_003404699.1| - 3.7e-05 23.1 0.0 0.00012 21.5 0.0 1.8 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HrcA_DNA-bdg PF03444.10 gi|284166420|ref|YP_003404699.1| - 0.0001 21.6 0.0 0.00027 20.3 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding MarR_2 PF12802.2 gi|284166420|ref|YP_003404699.1| - 0.0002 20.9 0.0 0.00047 19.7 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.1 gi|284166420|ref|YP_003404699.1| - 0.0024 17.4 0.0 0.0059 16.2 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|284166420|ref|YP_003404699.1| - 0.0031 17.4 0.0 0.0064 16.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|284166420|ref|YP_003404699.1| - 0.0048 16.4 0.1 0.0048 16.4 0.0 2.2 3 0 0 3 3 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|284166420|ref|YP_003404699.1| - 0.007 16.0 0.0 0.013 15.1 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_34 PF13601.1 gi|284166420|ref|YP_003404699.1| - 0.011 15.7 0.0 0.02 14.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|284166420|ref|YP_003404699.1| - 0.013 15.6 0.0 0.032 14.3 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator HTH_CodY PF08222.6 gi|284166420|ref|YP_003404699.1| - 0.015 14.6 0.2 0.039 13.3 0.0 1.7 2 0 0 2 2 1 0 CodY helix-turn-helix domain MarR PF01047.17 gi|284166420|ref|YP_003404699.1| - 0.022 14.4 0.0 0.044 13.5 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.1 gi|284166420|ref|YP_003404699.1| - 0.025 14.8 0.0 0.096 13.0 0.0 2.0 1 0 0 1 1 1 0 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|284166420|ref|YP_003404699.1| - 0.029 14.3 0.0 0.063 13.2 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain GntR PF00392.16 gi|284166420|ref|YP_003404699.1| - 0.06 12.7 0.1 0.26 10.7 0.0 2.1 3 0 0 3 3 2 0 Bacterial regulatory proteins, gntR family HTH_36 PF13730.1 gi|284166420|ref|YP_003404699.1| - 0.064 13.3 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|284166420|ref|YP_003404699.1| - 0.075 12.5 0.0 0.17 11.4 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_41 PF14502.1 gi|284166420|ref|YP_003404699.1| - 0.077 12.6 0.0 0.93 9.1 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain TrmB PF01978.14 gi|284166420|ref|YP_003404699.1| - 0.14 11.8 0.0 0.32 10.7 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB SnoaL_2 PF12680.2 gi|284166422|ref|YP_003404701.1| - 7.6e-19 68.0 7.2 8.8e-19 67.8 5.0 1.1 1 0 0 1 1 1 1 SnoaL-like domain SnoaL PF07366.7 gi|284166422|ref|YP_003404701.1| - 5.9e-08 32.3 1.2 1e-07 31.6 0.8 1.3 1 1 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_4 PF13577.1 gi|284166422|ref|YP_003404701.1| - 2.7e-07 30.5 1.7 3.1e-07 30.3 1.1 1.1 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.1 gi|284166422|ref|YP_003404701.1| - 1.4e-06 28.4 2.0 1.9e-06 28.0 1.4 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) NTF2 PF02136.15 gi|284166422|ref|YP_003404701.1| - 3.9e-05 23.9 0.0 5e-05 23.6 0.0 1.1 1 0 0 1 1 1 1 Nuclear transport factor 2 (NTF2) domain SnoaL_3 PF13474.1 gi|284166422|ref|YP_003404701.1| - 0.0014 18.6 0.1 0.0017 18.3 0.1 1.2 1 1 0 1 1 1 1 SnoaL-like domain Lumazine_bd PF12870.2 gi|284166422|ref|YP_003404701.1| - 0.033 14.2 0.0 0.042 13.9 0.0 1.2 1 0 0 1 1 1 0 Lumazine-binding domain Lumazine_bd_2 PF12893.2 gi|284166422|ref|YP_003404701.1| - 0.063 13.8 0.1 0.084 13.4 0.1 1.2 1 0 0 1 1 1 0 Putative lumazine-binding zinc_ribbon_4 PF13717.1 gi|284166423|ref|YP_003404702.1| - 0.055 13.1 0.2 0.76 9.5 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|284166423|ref|YP_003404702.1| - 0.077 12.5 0.2 1.2 8.8 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Rhodanese PF00581.15 gi|284166424|ref|YP_003404703.1| - 4.6e-17 62.3 0.0 9e-17 61.4 0.0 1.4 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B PF00753.22 gi|284166424|ref|YP_003404703.1| - 3.9e-15 56.0 3.9 3.9e-15 56.0 2.7 1.8 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|284166424|ref|YP_003404703.1| - 0.024 14.1 0.1 0.042 13.3 0.1 1.4 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|284166424|ref|YP_003404703.1| - 0.047 13.3 0.2 0.1 12.3 0.1 1.6 1 1 0 1 1 1 0 Beta-lactamase superfamily domain DUF95 PF01944.12 gi|284166425|ref|YP_003404704.1| - 1e-29 103.4 8.9 1e-29 103.4 6.2 3.4 2 1 0 3 3 3 2 Integral membrane protein DUF95 MFS_1 PF07690.11 gi|284166426|ref|YP_003404705.1| - 1.3e-11 43.8 62.0 1.3e-07 30.7 23.5 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|284166426|ref|YP_003404705.1| - 0.0008 17.9 25.0 0.03 12.7 8.1 3.0 1 1 0 2 2 2 2 MFS/sugar transport protein AstE_AspA PF04952.9 gi|284166427|ref|YP_003404706.1| - 4.2e-58 196.5 0.0 4.8e-58 196.3 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family PALP PF00291.20 gi|284166428|ref|YP_003404707.1| - 9.6e-56 189.2 0.3 1.1e-55 189.0 0.2 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme A2L_zn_ribbon PF08792.5 gi|284166428|ref|YP_003404707.1| - 0.079 12.4 0.1 4.3 6.9 0.1 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain NUDIX PF00293.23 gi|284166429|ref|YP_003404708.1| - 3.1e-17 62.4 0.1 3.9e-17 62.1 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain Nudix_N_2 PF14803.1 gi|284166429|ref|YP_003404708.1| - 1.9e-05 24.2 2.4 1.9e-05 24.2 1.7 1.8 2 0 0 2 2 2 1 Nudix N-terminal DZR PF12773.2 gi|284166429|ref|YP_003404708.1| - 0.00033 20.4 1.5 0.00058 19.6 1.0 1.4 1 0 0 1 1 1 1 Double zinc ribbon zf-TFIIB PF13453.1 gi|284166429|ref|YP_003404708.1| - 0.00052 19.1 1.9 0.0052 15.9 2.1 2.0 2 0 0 2 2 2 1 Transcription factor zinc-finger zf-ribbon_3 PF13248.1 gi|284166429|ref|YP_003404708.1| - 0.0034 16.5 2.6 0.25 10.6 0.2 2.5 2 0 0 2 2 2 1 zinc-ribbon domain RNHCP PF12647.2 gi|284166429|ref|YP_003404708.1| - 0.023 14.4 1.6 0.044 13.6 1.1 1.5 1 0 0 1 1 1 0 RNHCP domain RNA_POL_M_15KD PF02150.11 gi|284166429|ref|YP_003404708.1| - 0.042 13.5 1.1 0.13 12.0 0.7 1.8 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit GFA PF04828.9 gi|284166429|ref|YP_003404708.1| - 0.042 13.7 2.3 6.4 6.7 0.1 2.5 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme HypA PF01155.14 gi|284166429|ref|YP_003404708.1| - 0.093 12.4 0.4 0.21 11.3 0.3 1.5 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DNA_ligase_ZBD PF03119.11 gi|284166429|ref|YP_003404708.1| - 0.097 12.3 2.5 3.5 7.4 0.1 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-NADH-PPase PF09297.6 gi|284166429|ref|YP_003404708.1| - 0.14 11.7 5.1 0.78 9.3 3.5 2.2 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain UPF0547 PF10571.4 gi|284166429|ref|YP_003404708.1| - 0.25 11.0 7.3 4.3 7.1 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-IS66 PF13005.2 gi|284166429|ref|YP_003404708.1| - 0.25 11.3 0.3 0.25 11.3 0.2 2.4 1 1 2 3 3 2 0 zinc-finger binding domain of transposase IS66 Zn_Tnp_IS1595 PF12760.2 gi|284166429|ref|YP_003404708.1| - 0.3 10.9 3.4 0.23 11.2 1.1 1.8 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|284166429|ref|YP_003404708.1| - 0.31 10.6 4.4 3.7 7.1 3.0 2.2 1 1 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|284166429|ref|YP_003404708.1| - 0.56 9.5 3.4 1.7 7.9 2.4 1.8 1 1 0 1 1 1 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|284166429|ref|YP_003404708.1| - 0.7 9.8 5.9 2.4 8.1 0.3 2.4 1 1 1 2 2 2 0 Zinc ribbon domain zf-ISL3 PF14690.1 gi|284166429|ref|YP_003404708.1| - 0.99 9.4 3.4 11 6.1 0.2 2.3 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 tRNA-synt_1d PF00750.14 gi|284166430|ref|YP_003404709.1| - 1.7e-59 201.4 0.3 2.3e-59 200.9 0.2 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|284166430|ref|YP_003404709.1| - 1.1e-31 109.2 0.1 2.1e-30 105.0 0.0 2.6 2 0 0 2 2 2 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.11 gi|284166430|ref|YP_003404709.1| - 7e-11 42.5 0.0 2.3e-10 40.8 0.0 1.9 1 0 0 1 1 1 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.13 gi|284166430|ref|YP_003404709.1| - 0.013 14.1 0.0 0.11 11.1 0.0 2.3 3 0 0 3 3 3 0 tRNA synthetases class I (K) tRNA-synt_1e PF01406.14 gi|284166430|ref|YP_003404709.1| - 0.11 11.5 0.0 0.26 10.3 0.0 1.6 1 1 0 1 1 1 0 tRNA synthetases class I (C) catalytic domain Jag_N PF14804.1 gi|284166430|ref|YP_003404709.1| - 0.22 11.5 1.1 0.63 10.0 0.1 2.4 2 0 0 2 2 2 0 Jag N-terminus SpoIIIAH PF12685.2 gi|284166431|ref|YP_003404710.1| - 0.0076 15.7 5.0 0.011 15.3 3.5 1.2 1 0 0 1 1 1 1 SpoIIIAH-like protein Spore_YhcN_YlaJ PF09580.5 gi|284166431|ref|YP_003404710.1| - 0.04 14.0 5.6 0.059 13.4 3.9 1.3 1 1 0 1 1 1 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) Daxx PF03344.10 gi|284166431|ref|YP_003404710.1| - 0.06 11.8 12.9 0.065 11.7 9.0 1.0 1 0 0 1 1 1 0 Daxx Family CDC45 PF02724.9 gi|284166431|ref|YP_003404710.1| - 0.07 11.1 7.7 0.091 10.7 5.3 1.1 1 0 0 1 1 1 0 CDC45-like protein Trypan_PARP PF05887.6 gi|284166431|ref|YP_003404710.1| - 0.15 11.8 6.2 0.2 11.4 4.3 1.2 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) SDA1 PF05285.7 gi|284166431|ref|YP_003404710.1| - 1.4 8.1 16.5 1.5 8.0 11.5 1.1 1 0 0 1 1 1 0 SDA1 Nop14 PF04147.7 gi|284166431|ref|YP_003404710.1| - 1.5 6.6 16.3 1.7 6.4 11.3 1.1 1 0 0 1 1 1 0 Nop14-like family Herpes_LMP1 PF05297.6 gi|284166431|ref|YP_003404710.1| - 2.2 7.1 8.1 2.7 6.8 5.6 1.1 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) BUD22 PF09073.5 gi|284166431|ref|YP_003404710.1| - 5.5 5.9 13.5 6.6 5.6 9.3 1.1 1 0 0 1 1 1 0 BUD22 CbiA PF01656.18 gi|284166432|ref|YP_003404711.1| - 3.8e-32 111.2 0.1 5e-32 110.8 0.1 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|284166432|ref|YP_003404711.1| - 5.5e-18 65.3 0.0 7.7e-18 64.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain Fer4_NifH PF00142.13 gi|284166432|ref|YP_003404711.1| - 3.5e-13 49.3 0.0 2.2e-12 46.7 0.0 1.9 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family YhjQ PF06564.7 gi|284166432|ref|YP_003404711.1| - 9.6e-10 38.2 0.0 1.6e-09 37.4 0.0 1.3 1 0 0 1 1 1 1 YhjQ protein MipZ PF09140.6 gi|284166432|ref|YP_003404711.1| - 3e-08 33.0 0.1 8.4e-08 31.6 0.1 1.7 1 1 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.10 gi|284166432|ref|YP_003404711.1| - 9.1e-07 28.2 0.6 1.4e-05 24.2 0.9 2.0 2 0 0 2 2 2 1 Anion-transporting ATPase VirC1 PF07015.6 gi|284166432|ref|YP_003404711.1| - 0.00013 21.0 0.3 0.00023 20.2 0.2 1.3 1 0 0 1 1 1 1 VirC1 protein ParA PF10609.4 gi|284166432|ref|YP_003404711.1| - 0.00016 21.4 0.0 0.00038 20.2 0.0 1.6 1 0 0 1 1 1 1 ParA/MinD ATPase like AAA_26 PF13500.1 gi|284166432|ref|YP_003404711.1| - 0.00031 20.4 1.3 0.014 15.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain ArgK PF03308.11 gi|284166432|ref|YP_003404711.1| - 0.0057 15.4 2.3 0.013 14.2 1.6 1.6 1 1 0 1 1 1 1 ArgK protein FTHFS PF01268.14 gi|284166432|ref|YP_003404711.1| - 0.015 13.3 0.5 0.023 12.6 0.4 1.2 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase MobB PF03205.9 gi|284166432|ref|YP_003404711.1| - 0.037 13.7 0.3 0.097 12.3 0.1 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.17 gi|284166432|ref|YP_003404711.1| - 0.037 13.4 2.5 0.043 13.2 0.7 1.8 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_25 PF13481.1 gi|284166432|ref|YP_003404711.1| - 0.13 11.6 1.6 0.19 11.1 0.3 1.8 2 0 0 2 2 2 0 AAA domain eRF1_2 PF03464.10 gi|284166433|ref|YP_003404712.1| - 6.6e-37 126.8 0.0 1.6e-36 125.5 0.0 1.7 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|284166433|ref|YP_003404712.1| - 2.2e-30 105.1 0.2 8.8e-30 103.2 0.0 2.1 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|284166433|ref|YP_003404712.1| - 1.4e-24 86.1 0.0 2.2e-24 85.5 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 TF_Zn_Ribbon PF08271.7 gi|284166433|ref|YP_003404712.1| - 0.002 17.3 4.4 0.002 17.3 3.1 2.0 2 0 0 2 2 2 1 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|284166433|ref|YP_003404712.1| - 0.0075 16.1 2.8 0.02 14.8 1.9 1.7 1 0 0 1 1 1 1 Zinc ribbon domain eIF-5_eIF-2B PF01873.12 gi|284166433|ref|YP_003404712.1| - 0.012 15.2 0.3 0.044 13.4 0.0 2.0 2 0 0 2 2 2 0 Domain found in IF2B/IF5 Lar_restr_allev PF14354.1 gi|284166433|ref|YP_003404712.1| - 0.015 15.5 2.0 0.036 14.3 1.4 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar OrfB_Zn_ribbon PF07282.6 gi|284166433|ref|YP_003404712.1| - 0.045 13.4 1.6 0.098 12.3 1.1 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DUF1610 PF07754.6 gi|284166433|ref|YP_003404712.1| - 0.045 13.8 1.1 0.18 11.9 0.2 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zinc_ribbon_2 PF13240.1 gi|284166433|ref|YP_003404712.1| - 0.07 12.6 0.6 12 5.5 0.0 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Elf1 PF05129.8 gi|284166433|ref|YP_003404712.1| - 0.11 12.2 0.3 0.23 11.1 0.2 1.5 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like DUF2387 PF09526.5 gi|284166433|ref|YP_003404712.1| - 0.33 10.9 5.7 0.11 12.4 1.4 2.0 2 0 0 2 2 2 0 Probable metal-binding protein (DUF2387) zf-ribbon_3 PF13248.1 gi|284166433|ref|YP_003404712.1| - 0.54 9.5 5.2 3.7 6.8 3.6 2.1 1 1 1 2 2 2 0 zinc-ribbon domain YhfH PF14149.1 gi|284166433|ref|YP_003404712.1| - 0.86 9.4 4.9 1.4 8.8 0.1 2.8 3 0 0 3 3 2 0 YhfH-like protein LXG PF04740.7 gi|284166433|ref|YP_003404712.1| - 1.1 9.0 6.0 0.34 10.6 0.4 2.7 3 0 0 3 3 3 0 LXG domain of WXG superfamily CARDB PF07705.6 gi|284166434|ref|YP_003404713.1| - 3e-09 36.8 13.9 1.2e-05 25.2 0.6 3.3 2 1 0 3 3 3 2 CARDB PRC PF05239.11 gi|284166435|ref|YP_003404714.1| - 0.025 14.4 0.7 0.044 13.6 0.5 1.4 1 0 0 1 1 1 0 PRC-barrel domain TraB PF01963.12 gi|284166436|ref|YP_003404715.1| - 1e-05 25.1 0.2 0.039 13.3 0.0 2.7 2 1 1 3 3 3 2 TraB family DZR PF12773.2 gi|284166438|ref|YP_003404717.1| - 0.0099 15.6 0.4 0.015 15.0 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|284166438|ref|YP_003404717.1| - 0.021 14.2 4.1 0.058 12.8 2.9 1.6 1 1 0 1 1 1 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|284166438|ref|YP_003404717.1| - 0.058 12.8 0.5 0.058 12.8 0.3 1.5 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-RanBP PF00641.13 gi|284166438|ref|YP_003404717.1| - 0.065 12.3 1.5 0.19 10.8 1.0 1.7 1 1 0 1 1 1 0 Zn-finger in Ran binding protein and others zf-ribbon_3 PF13248.1 gi|284166438|ref|YP_003404717.1| - 0.12 11.5 5.2 1.2 8.4 3.7 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|284166438|ref|YP_003404717.1| - 0.13 12.1 1.5 0.21 11.4 1.1 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Hexapep PF00132.19 gi|284166439|ref|YP_003404718.1| - 2.7e-08 32.9 4.6 0.003 16.9 0.2 3.6 3 0 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|284166439|ref|YP_003404718.1| - 0.0024 17.3 2.6 1.2 8.7 0.1 2.8 2 1 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase Complex1_49kDa PF00346.14 gi|284166440|ref|YP_003404719.1| - 5.1e-65 219.1 0.0 3.4e-62 209.9 0.0 2.1 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.14 gi|284166440|ref|YP_003404719.1| - 1.2e-28 99.3 0.1 2.2e-28 98.5 0.0 1.5 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Cons_hypoth698 PF03601.9 gi|284166442|ref|YP_003404721.1| - 9.9e-58 195.1 23.3 1.2e-57 194.8 16.1 1.0 1 0 0 1 1 1 1 Conserved hypothetical protein 698 DUF2417 PF10329.4 gi|284166442|ref|YP_003404721.1| - 0.028 13.8 3.9 0.054 12.8 2.7 1.4 1 0 0 1 1 1 0 Region of unknown function (DUF2417) PALP PF00291.20 gi|284166443|ref|YP_003404722.1| - 5.7e-45 153.8 0.4 6.7e-45 153.6 0.3 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme HIT PF01230.18 gi|284166444|ref|YP_003404723.1| - 1.6e-17 63.8 0.1 1.9e-17 63.5 0.1 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|284166444|ref|YP_003404723.1| - 1.6e-08 34.7 0.0 2e-08 34.4 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|284166444|ref|YP_003404723.1| - 0.0018 17.8 0.0 0.0022 17.6 0.0 1.2 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 Glyco_trans_4_4 PF13579.1 gi|284166445|ref|YP_003404724.1| - 1.9e-16 60.6 7.9 1.9e-16 60.6 5.4 2.4 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.15 gi|284166445|ref|YP_003404724.1| - 3.6e-10 39.5 0.0 5e-10 39.0 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|284166445|ref|YP_003404724.1| - 5.4e-10 39.2 0.0 4.4e-09 36.3 0.0 2.3 2 1 0 2 2 2 1 Glycosyltransferase Family 4 NTP_transf_3 PF12804.2 gi|284166445|ref|YP_003404724.1| - 0.022 14.8 0.9 0.062 13.3 0.6 1.9 1 1 0 1 1 1 0 MobA-like NTP transferase domain DUF4006 PF13179.1 gi|284166446|ref|YP_003404725.1| - 0.17 11.4 0.1 0.28 10.7 0.1 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF4006) TPPK_C PF12555.3 gi|284166446|ref|YP_003404725.1| - 0.22 11.2 1.6 0.33 10.7 1.1 1.2 1 0 0 1 1 1 0 Thiamine pyrophosphokinase C terminal DUF1510 PF07423.6 gi|284166446|ref|YP_003404725.1| - 8.5 5.6 28.3 0.36 10.1 10.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1510) Peptidase_S9 PF00326.16 gi|284166447|ref|YP_003404726.1| - 4.4e-49 166.5 0.0 6.8e-49 165.9 0.0 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S15 PF02129.13 gi|284166447|ref|YP_003404726.1| - 5.5e-12 45.6 0.0 2.2e-08 33.8 0.1 2.2 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) DLH PF01738.13 gi|284166447|ref|YP_003404726.1| - 1.4e-09 37.6 0.0 2.3e-08 33.5 0.0 2.1 1 1 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_5 PF12695.2 gi|284166447|ref|YP_003404726.1| - 1.4e-09 37.8 0.0 2.3e-09 37.1 0.0 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|284166447|ref|YP_003404726.1| - 2.3e-08 34.2 0.2 7.1e-08 32.6 0.2 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family PD40 PF07676.7 gi|284166447|ref|YP_003404726.1| - 1.2e-07 31.1 6.3 5.1e-05 22.8 0.0 5.1 5 0 0 5 5 5 1 WD40-like Beta Propeller Repeat Peptidase_S9_N PF02897.10 gi|284166447|ref|YP_003404726.1| - 6.7e-07 28.2 0.0 1.5e-06 27.0 0.0 1.6 1 1 1 2 2 2 1 Prolyl oligopeptidase, N-terminal beta-propeller domain Abhydrolase_1 PF00561.15 gi|284166447|ref|YP_003404726.1| - 5.3e-05 22.8 0.0 0.019 14.5 0.0 2.2 1 1 0 2 2 2 1 alpha/beta hydrolase fold AXE1 PF05448.7 gi|284166447|ref|YP_003404726.1| - 7.2e-05 21.4 0.0 0.0039 15.7 0.0 2.1 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) Abhydrolase_3 PF07859.8 gi|284166447|ref|YP_003404726.1| - 9.9e-05 22.0 0.1 0.0026 17.3 0.0 2.2 1 1 0 1 1 1 1 alpha/beta hydrolase fold BAAT_C PF08840.6 gi|284166447|ref|YP_003404726.1| - 0.00066 19.4 0.0 0.015 14.9 0.0 2.1 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_2 PF02230.11 gi|284166447|ref|YP_003404726.1| - 0.0062 16.0 0.0 0.66 9.3 0.0 2.2 2 0 0 2 2 2 1 Phospholipase/Carboxylesterase DPPIV_N PF00930.16 gi|284166447|ref|YP_003404726.1| - 0.0068 15.0 0.0 0.31 9.6 0.0 3.3 1 1 1 2 2 2 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region Abhydrolase_4 PF08386.5 gi|284166447|ref|YP_003404726.1| - 0.01 15.6 0.0 0.025 14.4 0.0 1.5 1 0 0 1 1 1 0 TAP-like protein Esterase PF00756.15 gi|284166447|ref|YP_003404726.1| - 0.024 14.0 0.1 0.14 11.5 0.0 2.3 3 0 0 3 3 3 0 Putative esterase DUF829 PF05705.9 gi|284166447|ref|YP_003404726.1| - 0.055 13.1 0.0 0.098 12.3 0.0 1.3 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF829) PepSY_2 PF13670.1 gi|284166447|ref|YP_003404726.1| - 0.086 12.7 0.1 0.95 9.4 0.0 2.4 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain Peptidase_S28 PF05577.7 gi|284166447|ref|YP_003404726.1| - 0.16 10.5 0.0 0.24 9.9 0.0 1.1 1 0 0 1 1 1 0 Serine carboxypeptidase S28 ABC_tran PF00005.22 gi|284166448|ref|YP_003404727.1| - 2.4e-26 92.6 0.0 4.5e-26 91.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284166448|ref|YP_003404727.1| - 4e-11 43.4 0.0 7e-07 29.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|284166448|ref|YP_003404727.1| - 0.0063 16.0 0.0 0.012 15.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|284166448|ref|YP_003404727.1| - 0.018 14.2 0.0 0.031 13.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|284166448|ref|YP_003404727.1| - 0.023 15.0 0.1 0.042 14.1 0.1 1.3 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|284166448|ref|YP_003404727.1| - 0.045 13.7 0.0 0.095 12.6 0.0 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_16 PF13191.1 gi|284166448|ref|YP_003404727.1| - 0.046 13.7 0.0 0.09 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.1 gi|284166448|ref|YP_003404727.1| - 0.051 13.1 0.0 0.17 11.4 0.0 1.9 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|284166448|ref|YP_003404727.1| - 0.058 12.6 0.0 9.6 5.3 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain MobB PF03205.9 gi|284166448|ref|YP_003404727.1| - 0.067 12.8 0.0 0.56 9.9 0.0 2.3 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|284166448|ref|YP_003404727.1| - 0.097 12.0 0.0 0.28 10.5 0.0 1.8 2 0 0 2 2 2 0 AAA-like domain AAA_33 PF13671.1 gi|284166448|ref|YP_003404727.1| - 0.1 12.4 0.0 0.41 10.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.12 gi|284166448|ref|YP_003404727.1| - 0.1 12.1 0.0 0.17 11.4 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein ABC2_membrane_2 PF12679.2 gi|284166449|ref|YP_003404728.1| - 3.2e-36 124.6 18.8 7.7e-36 123.3 13.0 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|284166449|ref|YP_003404728.1| - 7.8e-19 67.7 23.2 1.5e-18 66.8 15.6 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|284166449|ref|YP_003404728.1| - 1.7e-08 34.0 13.1 1.7e-08 34.0 9.1 1.8 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|284166449|ref|YP_003404728.1| - 8.4e-07 28.3 21.6 8.4e-07 28.3 14.9 2.5 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|284166449|ref|YP_003404728.1| - 4.4e-06 26.0 15.3 4.4e-06 26.0 10.6 2.2 1 1 1 2 2 2 1 ABC-2 type transporter MIG-14_Wnt-bd PF06664.7 gi|284166449|ref|YP_003404728.1| - 4.6 5.9 9.3 0.17 10.7 0.1 2.5 2 1 1 3 3 3 0 Wnt-binding factor required for Wnt secretion Fe-ADH_2 PF13685.1 gi|284166450|ref|YP_003404729.1| - 4e-60 203.1 2.6 4.9e-60 202.9 1.8 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|284166450|ref|YP_003404729.1| - 4.6e-21 74.8 7.0 8.4e-21 74.0 4.8 1.4 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|284166450|ref|YP_003404729.1| - 1.2e-10 40.8 0.1 3e-10 39.4 0.1 1.6 1 1 0 1 1 1 1 3-dehydroquinate synthase Epimerase PF01370.16 gi|284166451|ref|YP_003404730.1| - 6.7e-36 123.8 0.3 7.2e-35 120.5 0.2 2.0 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|284166451|ref|YP_003404730.1| - 1.6e-12 47.8 0.1 2.7e-12 47.0 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding RmlD_sub_bind PF04321.12 gi|284166451|ref|YP_003404730.1| - 7.3e-10 38.2 0.0 0.0005 19.0 0.0 2.1 2 0 0 2 2 2 2 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|284166451|ref|YP_003404730.1| - 1.6e-08 33.5 0.0 1e-06 27.6 0.0 2.1 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|284166451|ref|YP_003404730.1| - 1.1e-07 31.0 0.0 0.0021 17.0 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein NmrA PF05368.8 gi|284166451|ref|YP_003404730.1| - 0.0025 17.1 0.0 0.004 16.4 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.20 gi|284166451|ref|YP_003404730.1| - 0.0092 15.9 0.1 0.025 14.5 0.0 1.7 1 1 0 1 1 1 1 short chain dehydrogenase TrkA_N PF02254.13 gi|284166451|ref|YP_003404730.1| - 0.053 13.5 0.1 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain KaiC PF06745.8 gi|284166452|ref|YP_003404731.1| - 2.1e-14 53.1 0.0 3.2e-14 52.5 0.0 1.2 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|284166452|ref|YP_003404731.1| - 5.6e-06 25.8 0.2 2.2e-05 23.9 0.2 1.8 1 1 0 1 1 1 1 AAA domain zf-FCS PF06467.9 gi|284166452|ref|YP_003404731.1| - 0.0026 17.3 0.3 0.0047 16.5 0.2 1.4 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif DUF2348 PF09807.4 gi|284166452|ref|YP_003404731.1| - 0.044 12.8 0.0 0.068 12.2 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2348) DUF123 PF01986.11 gi|284166455|ref|YP_003404734.1| - 4.4e-25 87.6 0.0 5.5e-25 87.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF123 CMD PF02627.15 gi|284166456|ref|YP_003404735.1| - 2e-10 40.3 2.0 3.8e-09 36.2 0.1 2.6 3 0 0 3 3 3 2 Carboxymuconolactone decarboxylase family Glu_synthase PF01645.12 gi|284166457|ref|YP_003404736.1| - 2e-153 510.7 0.2 4.1e-152 506.3 0.0 2.1 2 0 0 2 2 2 1 Conserved region in glutamate synthase GATase_2 PF00310.16 gi|284166457|ref|YP_003404736.1| - 1.6e-121 405.4 0.0 3.1e-121 404.4 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Glu_syn_central PF04898.9 gi|284166457|ref|YP_003404736.1| - 2.5e-111 371.5 0.0 3.9e-111 370.9 0.0 1.3 1 0 0 1 1 1 1 Glutamate synthase central domain GXGXG PF01493.14 gi|284166457|ref|YP_003404736.1| - 2.2e-62 209.6 7.1 3.7e-62 208.9 4.9 1.3 1 0 0 1 1 1 1 GXGXG motif FMN_dh PF01070.13 gi|284166457|ref|YP_003404736.1| - 0.091 11.5 6.0 0.06 12.1 2.3 2.0 2 0 0 2 2 2 0 FMN-dependent dehydrogenase Metal_resist PF13801.1 gi|284166457|ref|YP_003404736.1| - 0.75 9.7 7.3 2.1 8.3 0.0 3.8 4 0 0 4 4 4 0 Heavy-metal resistance HGTP_anticodon PF03129.15 gi|284166458|ref|YP_003404737.1| - 7e-18 64.3 0.7 1.3e-17 63.5 0.5 1.5 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.6 gi|284166458|ref|YP_003404737.1| - 9.5e-18 63.8 0.1 2.4e-17 62.6 0.1 1.7 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal tRNA-synt_2b PF00587.20 gi|284166458|ref|YP_003404737.1| - 5.5e-16 58.6 0.0 1e-15 57.7 0.0 1.7 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Pup PF05639.6 gi|284166458|ref|YP_003404737.1| - 2.8 8.4 7.1 8 7.0 4.9 1.8 1 0 0 1 1 1 0 Pup-like protein Virul_fac_BrkB PF03631.10 gi|284166459|ref|YP_003404738.1| - 9e-47 159.6 30.4 1.1e-46 159.3 21.1 1.0 1 0 0 1 1 1 1 Virulence factor BrkB ADH_zinc_N PF00107.21 gi|284166460|ref|YP_003404739.1| - 2.5e-33 114.3 0.1 4.6e-33 113.5 0.1 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|284166460|ref|YP_003404739.1| - 2.7e-20 73.5 2.1 8.3e-20 71.9 0.1 2.2 2 1 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|284166460|ref|YP_003404739.1| - 2.5e-14 52.9 0.3 9.1e-13 47.9 0.1 2.5 1 1 1 2 2 2 1 Alcohol dehydrogenase GroES-like domain NAD_binding_10 PF13460.1 gi|284166460|ref|YP_003404739.1| - 0.0079 16.2 0.4 0.014 15.3 0.3 1.4 1 0 0 1 1 1 1 NADH(P)-binding NUDIX PF00293.23 gi|284166462|ref|YP_003404741.1| - 9.4e-17 60.9 1.7 1.2e-16 60.5 1.2 1.1 1 0 0 1 1 1 1 NUDIX domain EamA PF00892.15 gi|284166463|ref|YP_003404742.1| - 4.8e-08 33.0 13.2 6.6e-08 32.6 9.1 1.1 1 0 0 1 1 1 1 EamA-like transporter family Mg_trans_NIPA PF05653.9 gi|284166463|ref|YP_003404742.1| - 0.0022 16.9 5.5 0.0032 16.4 3.8 1.3 1 1 0 1 1 1 1 Magnesium transporter NIPA EmrE PF13536.1 gi|284166463|ref|YP_003404742.1| - 0.0051 17.0 14.5 0.0051 17.0 10.1 1.8 1 1 1 2 2 2 1 Multidrug resistance efflux transporter PilX_N PF14341.1 gi|284166463|ref|YP_003404742.1| - 0.13 11.9 4.5 0.49 10.1 3.1 2.1 1 1 0 1 1 1 0 PilX N-terminal HlyIII PF03006.15 gi|284166463|ref|YP_003404742.1| - 0.67 9.3 5.8 0.67 9.3 3.5 1.5 1 1 0 1 1 1 0 Haemolysin-III related EamA PF00892.15 gi|284166464|ref|YP_003404743.1| - 7.9e-12 45.3 15.3 9.5e-12 45.0 10.6 1.1 1 0 0 1 1 1 1 EamA-like transporter family EmrE PF13536.1 gi|284166464|ref|YP_003404743.1| - 1.6e-05 25.0 12.7 3.3e-05 24.0 8.8 1.6 1 1 0 1 1 1 1 Multidrug resistance efflux transporter Mg_trans_NIPA PF05653.9 gi|284166464|ref|YP_003404743.1| - 0.0033 16.4 5.7 0.0033 16.4 3.9 1.8 1 1 1 2 2 2 1 Magnesium transporter NIPA GtrA PF04138.9 gi|284166464|ref|YP_003404743.1| - 0.35 10.8 5.1 0.63 10.0 3.5 1.4 1 0 0 1 1 1 0 GtrA-like protein UPF0546 PF10639.4 gi|284166464|ref|YP_003404743.1| - 1.1 9.0 4.2 0.93 9.3 1.3 1.8 2 0 0 2 2 2 0 Uncharacterised protein family UPF0546 NfeD PF01957.13 gi|284166464|ref|YP_003404743.1| - 3.4 7.8 12.5 0.45 10.6 0.7 2.2 1 1 1 2 2 2 0 NfeD-like C-terminal, partner-binding UvrD-helicase PF00580.16 gi|284166465|ref|YP_003404744.1| - 1.2e-45 156.1 0.0 3.3e-45 154.7 0.0 1.7 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|284166465|ref|YP_003404744.1| - 6.4e-34 117.9 0.0 1.4e-33 116.8 0.0 1.6 2 0 0 2 2 2 1 UvrD-like helicase C-terminal domain PDDEXK_1 PF12705.2 gi|284166465|ref|YP_003404744.1| - 1.8e-26 93.0 0.1 6.5e-26 91.2 0.1 2.0 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily AAA_19 PF13245.1 gi|284166465|ref|YP_003404744.1| - 1.9e-10 40.3 0.2 1e-09 37.9 0.2 2.4 1 0 0 1 1 1 1 Part of AAA domain UvrD_C_2 PF13538.1 gi|284166465|ref|YP_003404744.1| - 3.8e-09 36.5 0.0 0.0028 17.7 0.0 3.7 3 0 0 3 3 3 3 UvrD-like helicase C-terminal domain AAA_12 PF13087.1 gi|284166465|ref|YP_003404744.1| - 6.6e-08 32.1 0.0 0.00064 19.1 0.0 2.8 3 0 0 3 3 3 2 AAA domain DUF2800 PF10926.3 gi|284166465|ref|YP_003404744.1| - 0.00023 20.4 0.0 0.00049 19.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2800) AAA_30 PF13604.1 gi|284166465|ref|YP_003404744.1| - 0.00047 19.7 0.0 0.0012 18.4 0.0 1.7 1 0 0 1 1 1 1 AAA domain Viral_helicase1 PF01443.13 gi|284166465|ref|YP_003404744.1| - 0.004 16.7 0.0 0.073 12.5 0.0 2.6 3 0 0 3 3 3 1 Viral (Superfamily 1) RNA helicase DUF3008 PF11450.3 gi|284166465|ref|YP_003404744.1| - 0.21 11.7 0.0 0.47 10.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknwon function (DUF3008) PDDEXK_1 PF12705.2 gi|284166466|ref|YP_003404745.1| - 4.7e-07 29.4 0.1 0.0018 17.7 0.0 2.1 2 0 0 2 2 2 2 PD-(D/E)XK nuclease superfamily UvrD_C PF13361.1 gi|284166467|ref|YP_003404746.1| - 4.1e-05 23.2 0.0 9.7e-05 21.9 0.0 1.5 2 0 0 2 2 2 1 UvrD-like helicase C-terminal domain E1_dh PF00676.15 gi|284166467|ref|YP_003404746.1| - 0.2 10.3 0.4 0.34 9.6 0.2 1.2 1 0 0 1 1 1 0 Dehydrogenase E1 component CBS PF00571.23 gi|284166468|ref|YP_003404747.1| - 3.4e-31 106.7 7.5 2.4e-16 59.2 0.6 2.0 2 0 0 2 2 2 2 CBS domain DUF3117 PF11314.3 gi|284166469|ref|YP_003404748.1| - 0.058 12.9 0.1 0.52 9.8 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3117) HSP20 PF00011.16 gi|284166470|ref|YP_003404749.1| - 5.7e-14 51.8 0.0 9.1e-14 51.1 0.0 1.3 1 0 0 1 1 1 1 Hsp20/alpha crystallin family Pyr_redox_2 PF07992.9 gi|284166471|ref|YP_003404750.1| - 8.2e-20 71.5 0.0 1.2e-19 71.0 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|284166471|ref|YP_003404750.1| - 3.2e-10 39.9 0.1 6.3e-10 39.0 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|284166471|ref|YP_003404750.1| - 4.7e-09 36.5 0.6 3.5e-08 33.7 0.0 2.5 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|284166471|ref|YP_003404750.1| - 0.0041 16.8 2.6 0.12 12.1 1.8 2.4 1 1 0 1 1 1 1 FAD-NAD(P)-binding GIDA PF01134.17 gi|284166471|ref|YP_003404750.1| - 0.072 11.9 0.0 4.3 6.0 0.0 2.2 2 0 0 2 2 2 0 Glucose inhibited division protein A PQQ_3 PF13570.1 gi|284166473|ref|YP_003404752.1| - 0.2 11.9 4.4 19 5.7 0.2 3.5 3 0 0 3 3 3 0 PQQ-like domain PfkB PF00294.19 gi|284166474|ref|YP_003404753.1| - 2.7e-49 167.9 0.1 3.1e-49 167.7 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Amidohydro_4 PF13147.1 gi|284166474|ref|YP_003404753.1| - 7e-05 22.9 1.9 0.012 15.6 0.6 2.1 2 0 0 2 2 2 2 Amidohydrolase Phos_pyr_kin PF08543.7 gi|284166474|ref|YP_003404753.1| - 0.013 14.7 0.0 0.021 14.0 0.0 1.3 1 0 0 1 1 1 0 Phosphomethylpyrimidine kinase PD40 PF07676.7 gi|284166474|ref|YP_003404753.1| - 0.12 12.0 0.2 0.58 9.8 0.0 2.1 2 0 0 2 2 2 0 WD40-like Beta Propeller Repeat RTC PF01137.16 gi|284166475|ref|YP_003404754.1| - 2.2e-69 232.7 0.0 2.8e-69 232.4 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.8 gi|284166475|ref|YP_003404754.1| - 8.4e-14 51.4 0.2 1.6e-13 50.5 0.1 1.5 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain DUF1469 PF07332.6 gi|284166476|ref|YP_003404755.1| - 0.08 12.6 3.5 0.089 12.5 2.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) SPC12 PF06645.8 gi|284166476|ref|YP_003404755.1| - 0.13 12.0 0.0 0.16 11.7 0.0 1.1 1 0 0 1 1 1 0 Microsomal signal peptidase 12 kDa subunit (SPC12) DUF1772 PF08592.6 gi|284166476|ref|YP_003404755.1| - 0.14 11.8 1.4 0.16 11.7 1.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF1772) Tetraspannin PF00335.15 gi|284166476|ref|YP_003404755.1| - 1.2 8.3 6.9 2.3 7.4 4.9 1.4 1 1 0 1 1 1 0 Tetraspanin family DUF4282 PF14110.1 gi|284166476|ref|YP_003404755.1| - 3.1 8.0 5.3 3.5 7.8 3.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) MutL_C PF08676.6 gi|284166477|ref|YP_003404756.1| - 3.7e-37 127.1 0.0 5.5e-37 126.5 0.0 1.3 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.14 gi|284166477|ref|YP_003404756.1| - 6.8e-32 109.4 0.0 1.2e-31 108.6 0.0 1.4 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.1 gi|284166477|ref|YP_003404756.1| - 1.3e-10 41.0 0.1 2.5e-10 40.1 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.21 gi|284166477|ref|YP_003404756.1| - 3.1e-09 36.5 0.2 9e-09 35.0 0.1 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Hamartin PF04388.7 gi|284166477|ref|YP_003404756.1| - 1.5 7.3 8.0 2.3 6.7 5.5 1.2 1 0 0 1 1 1 0 Hamartin protein DHDPS PF00701.17 gi|284166478|ref|YP_003404757.1| - 2.9e-69 232.8 0.0 3.3e-69 232.6 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family Virul_fac_BrkB PF03631.10 gi|284166479|ref|YP_003404758.1| - 1.1e-36 126.6 17.4 1.2e-36 126.3 12.1 1.1 1 0 0 1 1 1 1 Virulence factor BrkB DUF2973 PF11189.3 gi|284166479|ref|YP_003404758.1| - 0.052 13.3 0.0 0.24 11.1 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2973) PfkB PF00294.19 gi|284166480|ref|YP_003404759.1| - 3.8e-08 32.8 0.7 6.6e-06 25.4 0.6 2.3 2 0 0 2 2 2 2 pfkB family carbohydrate kinase PAS_9 PF13426.1 gi|284166481|ref|YP_003404760.1| - 7.4e-33 113.0 0.2 8.3e-27 93.5 0.0 3.2 4 0 0 4 4 3 2 PAS domain PAS_4 PF08448.5 gi|284166481|ref|YP_003404760.1| - 3.8e-17 62.3 8.0 3.6e-09 36.6 0.2 3.4 3 0 0 3 3 3 2 PAS fold PAS PF00989.19 gi|284166481|ref|YP_003404760.1| - 8e-14 51.3 0.0 1.4e-09 37.7 0.0 3.0 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.21 gi|284166481|ref|YP_003404760.1| - 1.6e-13 50.3 0.0 3.3e-13 49.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF PF01590.21 gi|284166481|ref|YP_003404760.1| - 9.4e-13 48.5 0.5 9.4e-13 48.5 0.4 2.2 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.1 gi|284166481|ref|YP_003404760.1| - 1.1e-10 41.7 0.1 7.4e-10 39.0 0.0 2.3 2 0 0 2 2 2 1 GAF domain PAS_3 PF08447.6 gi|284166481|ref|YP_003404760.1| - 2.5e-10 40.2 0.0 1e-09 38.3 0.0 2.1 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.1 gi|284166481|ref|YP_003404760.1| - 3.5e-10 39.3 0.3 0.001 18.8 0.0 3.7 3 0 0 3 3 3 2 PAS domain PAS_7 PF12860.2 gi|284166481|ref|YP_003404760.1| - 2.3e-09 37.2 0.7 1.1e-06 28.6 0.0 3.8 2 2 1 3 3 3 1 PAS fold HATPase_c_2 PF13581.1 gi|284166481|ref|YP_003404760.1| - 8.7e-07 28.7 0.4 2.5e-06 27.2 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain GAF_2 PF13185.1 gi|284166481|ref|YP_003404760.1| - 1.3e-05 25.7 0.4 3.7e-05 24.2 0.2 1.9 2 0 0 2 2 1 1 GAF domain HATPase_c_3 PF13589.1 gi|284166481|ref|YP_003404760.1| - 0.03 13.9 0.0 0.062 12.9 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Glycos_trans_3N PF02885.12 gi|284166481|ref|YP_003404760.1| - 0.036 13.6 0.1 0.092 12.3 0.1 1.7 1 0 0 1 1 1 0 Glycosyl transferase family, helical bundle domain HisKA PF00512.20 gi|284166481|ref|YP_003404760.1| - 0.11 12.5 1.5 0.4 10.7 1.1 2.1 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain MutS_V PF00488.16 gi|284166482|ref|YP_003404761.1| - 2.6e-101 337.9 0.0 6.1e-101 336.7 0.0 1.6 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.13 gi|284166482|ref|YP_003404761.1| - 2.2e-42 145.1 5.2 1.7e-41 142.2 3.8 2.0 2 0 0 2 2 2 1 MutS domain III MutS_I PF01624.15 gi|284166482|ref|YP_003404761.1| - 1.2e-27 96.1 0.0 2.7e-27 95.0 0.0 1.6 1 0 0 1 1 1 1 MutS domain I MutS_IV PF05190.13 gi|284166482|ref|YP_003404761.1| - 1.8e-25 88.8 1.4 4.5e-25 87.6 1.0 1.7 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.12 gi|284166482|ref|YP_003404761.1| - 1.4e-18 67.2 0.0 6.4e-18 65.1 0.0 2.2 1 0 0 1 1 1 1 MutS domain II AAA_23 PF13476.1 gi|284166482|ref|YP_003404761.1| - 0.033 14.5 0.2 2.5 8.3 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|284166482|ref|YP_003404761.1| - 0.047 13.2 0.0 0.11 12.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|284166482|ref|YP_003404761.1| - 0.064 13.1 0.0 0.22 11.3 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|284166482|ref|YP_003404761.1| - 1.4 9.7 4.6 5.5 7.8 0.0 3.7 3 1 0 3 3 3 0 AAA domain Usp PF00582.21 gi|284166483|ref|YP_003404762.1| - 3.8e-09 36.8 4.0 3.8e-09 36.8 2.8 2.0 2 1 0 2 2 2 1 Universal stress protein family Usp PF00582.21 gi|284166485|ref|YP_003404764.1| - 3e-06 27.4 13.0 7.9e-06 26.1 3.6 2.2 2 0 0 2 2 2 2 Universal stress protein family DUF3071 PF11268.3 gi|284166485|ref|YP_003404764.1| - 0.012 15.3 0.2 0.03 14.0 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3071) B12-binding PF02310.14 gi|284166485|ref|YP_003404764.1| - 0.39 10.5 4.2 0.52 10.1 0.3 2.6 1 1 1 2 2 2 0 B12 binding domain AA_permease_2 PF13520.1 gi|284166486|ref|YP_003404765.1| - 8.8e-48 162.8 35.8 1.1e-47 162.6 24.8 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|284166486|ref|YP_003404765.1| - 3.5e-40 137.7 37.4 4.3e-40 137.4 25.9 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease_C PF13906.1 gi|284166486|ref|YP_003404765.1| - 0.0074 16.1 1.6 0.0074 16.1 1.1 2.7 3 0 0 3 3 3 1 C-terminus of AA_permease tRNA_bind PF01588.15 gi|284166487|ref|YP_003404766.1| - 1.7e-14 53.4 0.0 1.9e-14 53.2 0.0 1.0 1 0 0 1 1 1 1 Putative tRNA binding domain DUF3943 PF13084.1 gi|284166488|ref|YP_003404767.1| - 0.092 12.3 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3943) Bac_luciferase PF00296.15 gi|284166489|ref|YP_003404768.1| - 1.4e-72 244.4 3.5 1.8e-72 244.1 2.4 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase Phos_pyr_kin PF08543.7 gi|284166490|ref|YP_003404769.1| - 1.8e-84 282.8 2.9 2.7e-84 282.2 2.0 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Aldolase_2 PF10120.4 gi|284166490|ref|YP_003404769.1| - 1.1e-50 171.2 0.1 1.9e-50 170.5 0.0 1.4 1 0 0 1 1 1 1 Putative aldolase PfkB PF00294.19 gi|284166490|ref|YP_003404769.1| - 1.8e-11 43.7 2.1 2.9e-11 43.0 1.5 1.3 1 0 0 1 1 1 1 pfkB family carbohydrate kinase AIRS_C PF02769.17 gi|284166491|ref|YP_003404770.1| - 2.2e-25 89.4 0.7 3e-25 89.0 0.5 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|284166491|ref|YP_003404770.1| - 4.6e-05 23.5 0.1 4.6e-05 23.5 0.1 2.5 3 0 0 3 3 3 1 AIR synthase related protein, N-terminal domain DUF3040 PF11239.3 gi|284166492|ref|YP_003404771.1| - 0.19 11.7 2.9 0.27 11.3 2.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) DUF3493 PF11998.3 gi|284166492|ref|YP_003404771.1| - 3.1 7.7 4.8 4.1 7.3 3.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3493) MatE PF01554.13 gi|284166494|ref|YP_003404773.1| - 1.3e-45 154.8 21.8 2.9e-26 92.0 0.9 2.7 2 1 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|284166494|ref|YP_003404773.1| - 2.7e-10 40.2 8.6 2.7e-10 40.2 5.9 3.9 3 2 0 3 3 3 2 Polysaccharide biosynthesis C-terminal domain MVIN PF03023.9 gi|284166494|ref|YP_003404773.1| - 0.0003 19.3 7.4 0.0003 19.3 5.1 2.3 2 1 0 2 2 2 1 MviN-like protein MoeA_N PF03453.12 gi|284166495|ref|YP_003404774.1| - 4.7e-46 156.0 1.5 8.1e-46 155.3 1.0 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|284166495|ref|YP_003404774.1| - 2.4e-27 95.1 0.0 7.8e-27 93.4 0.0 1.9 2 0 0 2 2 2 1 Probable molybdopterin binding domain PBP_like PF12727.2 gi|284166495|ref|YP_003404774.1| - 1.7e-26 92.3 0.9 5.7e-26 90.6 0.1 2.2 2 1 0 2 2 2 1 PBP superfamily domain MoeA_C PF03454.10 gi|284166495|ref|YP_003404774.1| - 4.9e-14 52.0 1.3 8.1e-14 51.3 0.0 2.1 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) PBP_like_2 PF12849.2 gi|284166495|ref|YP_003404774.1| - 0.01 15.3 0.0 0.42 10.0 0.0 2.3 1 1 0 1 1 1 0 PBP superfamily domain HTH_10 PF04967.7 gi|284166496|ref|YP_003404775.1| - 1.1e-17 63.3 0.0 2.3e-17 62.3 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain HTH_3 PF01381.17 gi|284166496|ref|YP_003404775.1| - 0.00026 20.7 0.0 0.00064 19.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_24 PF13412.1 gi|284166496|ref|YP_003404775.1| - 0.00044 19.5 0.0 0.0014 17.9 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TetR_N PF00440.18 gi|284166496|ref|YP_003404775.1| - 0.0033 17.0 0.0 0.035 13.7 0.0 2.5 2 1 0 2 2 2 1 Bacterial regulatory proteins, tetR family HTH_AsnC-type PF13404.1 gi|284166496|ref|YP_003404775.1| - 0.0042 16.6 0.0 0.01 15.3 0.0 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|284166496|ref|YP_003404775.1| - 0.0077 15.8 0.0 0.022 14.4 0.0 1.8 2 0 0 2 2 2 1 MarR family Sigma70_r4 PF04545.11 gi|284166496|ref|YP_003404775.1| - 0.0089 15.3 1.9 0.0094 15.2 0.2 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_23 PF13384.1 gi|284166496|ref|YP_003404775.1| - 0.017 14.7 0.0 0.048 13.3 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_AraC PF00165.18 gi|284166496|ref|YP_003404775.1| - 0.017 14.9 0.0 0.039 13.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family SIMPL PF04402.9 gi|284166496|ref|YP_003404775.1| - 0.026 14.3 0.0 0.055 13.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF541) HTH_38 PF13936.1 gi|284166496|ref|YP_003404775.1| - 0.033 13.7 0.1 0.1 12.1 0.1 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain Phage_CI_repr PF07022.8 gi|284166496|ref|YP_003404775.1| - 0.046 13.8 0.0 0.096 12.7 0.0 1.4 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain UPF0122 PF04297.9 gi|284166496|ref|YP_003404775.1| - 0.046 13.7 0.0 0.078 13.0 0.0 1.4 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_psq PF05225.11 gi|284166496|ref|YP_003404775.1| - 0.047 13.2 0.0 0.1 12.1 0.0 1.6 1 0 0 1 1 1 0 helix-turn-helix, Psq domain HTH_30 PF13556.1 gi|284166496|ref|YP_003404775.1| - 0.094 12.3 0.0 0.39 10.3 0.0 2.1 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|284166496|ref|YP_003404775.1| - 0.13 11.7 0.3 1.8 8.1 0.2 2.3 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_11 PF08279.7 gi|284166496|ref|YP_003404775.1| - 0.14 11.8 0.0 0.3 10.7 0.0 1.5 1 0 0 1 1 1 0 HTH domain GST_N_3 PF13417.1 gi|284166497|ref|YP_003404776.1| - 1.2e-08 35.0 0.0 1.6e-08 34.6 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.1 gi|284166497|ref|YP_003404776.1| - 0.00018 21.4 0.0 0.00025 20.9 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.19 gi|284166497|ref|YP_003404776.1| - 0.0025 17.7 0.0 0.0038 17.1 0.0 1.5 1 1 0 1 1 1 1 Glutaredoxin HAD_2 PF13419.1 gi|284166499|ref|YP_003404778.1| - 3.8e-17 63.0 0.2 4.5e-17 62.8 0.1 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|284166499|ref|YP_003404778.1| - 0.0009 19.7 0.0 0.061 13.7 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase DUF393 PF04134.7 gi|284166499|ref|YP_003404778.1| - 0.047 14.7 0.0 0.079 14.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF393 Hydrolase_like PF13242.1 gi|284166499|ref|YP_003404778.1| - 0.075 12.7 0.1 0.14 11.8 0.1 1.5 1 0 0 1 1 1 0 HAD-hyrolase-like DUF86 PF01934.12 gi|284166499|ref|YP_003404778.1| - 0.087 12.4 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF86 NIF PF03031.13 gi|284166499|ref|YP_003404778.1| - 0.14 11.8 0.0 7.1 6.2 0.0 2.1 2 0 0 2 2 2 0 NLI interacting factor-like phosphatase Pterin_4a PF01329.14 gi|284166502|ref|YP_003404781.1| - 9.6e-23 79.7 0.0 1e-22 79.7 0.0 1.0 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase IF-2 PF11987.3 gi|284166502|ref|YP_003404781.1| - 0.054 13.3 0.1 0.098 12.5 0.0 1.4 1 1 0 1 1 1 0 Translation-initiation factor 2 GlutR_N PF05201.10 gi|284166504|ref|YP_003404783.1| - 3.2e-34 117.6 0.1 8.7e-34 116.3 0.1 1.7 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.15 gi|284166504|ref|YP_003404783.1| - 3.6e-33 114.5 0.1 8.6e-33 113.2 0.1 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.15 gi|284166504|ref|YP_003404783.1| - 5.3e-22 77.6 1.7 1.2e-21 76.5 1.2 1.6 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.12 gi|284166504|ref|YP_003404783.1| - 4.2e-05 23.8 3.4 4.8e-05 23.6 0.6 2.5 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.1 gi|284166504|ref|YP_003404783.1| - 0.00059 20.0 2.3 0.00075 19.7 0.4 2.0 2 0 0 2 2 2 1 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.14 gi|284166504|ref|YP_003404783.1| - 0.0013 17.9 0.1 0.0024 17.0 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.16 gi|284166504|ref|YP_003404783.1| - 0.0055 16.5 0.4 0.011 15.6 0.3 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain EcoEI_R_C PF08463.5 gi|284166504|ref|YP_003404783.1| - 0.025 14.4 0.4 0.048 13.5 0.3 1.4 1 0 0 1 1 1 0 EcoEI R protein C-terminal GFO_IDH_MocA PF01408.17 gi|284166504|ref|YP_003404783.1| - 0.045 14.2 3.0 0.86 10.1 0.2 2.9 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold ApbA PF02558.11 gi|284166504|ref|YP_003404783.1| - 0.084 12.3 0.1 0.42 10.0 0.1 2.1 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.1 gi|284166505|ref|YP_003404784.1| - 3.1e-26 91.6 0.1 5.5e-25 87.5 0.0 2.0 1 1 1 2 2 2 1 Putative NAD(P)-binding NAD_binding_3 PF03447.11 gi|284166505|ref|YP_003404784.1| - 0.00066 20.0 0.4 0.0019 18.5 0.1 1.8 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|284166505|ref|YP_003404784.1| - 0.0013 18.7 0.8 0.008 16.1 0.5 2.1 1 1 0 1 1 1 1 TrkA-N domain Rossmann-like PF10727.4 gi|284166505|ref|YP_003404784.1| - 0.011 15.5 1.0 0.024 14.3 0.4 1.7 2 0 0 2 2 2 0 Rossmann-like domain Saccharop_dh PF03435.13 gi|284166505|ref|YP_003404784.1| - 0.024 13.6 0.1 0.031 13.2 0.1 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase 2-Hacid_dh_C PF02826.14 gi|284166505|ref|YP_003404784.1| - 0.032 13.3 0.0 0.15 11.2 0.0 2.1 2 1 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Oxidored_nitro PF00148.14 gi|284166505|ref|YP_003404784.1| - 0.035 12.7 0.0 0.047 12.3 0.0 1.2 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase PALP PF00291.20 gi|284166505|ref|YP_003404784.1| - 0.04 13.1 0.5 0.23 10.6 0.1 2.0 1 1 1 2 2 2 0 Pyridoxal-phosphate dependent enzyme GFO_IDH_MocA PF01408.17 gi|284166505|ref|YP_003404784.1| - 0.091 13.2 0.1 0.21 12.0 0.0 1.6 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Aldo_ket_red PF00248.16 gi|284166506|ref|YP_003404785.1| - 0.024 13.4 0.1 0.57 8.9 0.0 2.7 3 0 0 3 3 3 0 Aldo/keto reductase family Prenyltransf PF01255.14 gi|284166508|ref|YP_003404787.1| - 6.5e-71 237.9 0.0 8.5e-71 237.6 0.0 1.1 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase Prenyltransf PF01255.14 gi|284166510|ref|YP_003404789.1| - 1.4e-28 99.5 0.0 3.8e-28 98.1 0.0 1.6 2 0 0 2 2 2 1 Putative undecaprenyl diphosphate synthase DUF1707 PF08044.6 gi|284166510|ref|YP_003404789.1| - 0.051 13.3 0.1 0.14 11.9 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1707) Nitrate_red_del PF02613.10 gi|284166510|ref|YP_003404789.1| - 0.091 12.5 0.0 0.31 10.8 0.0 1.8 1 1 1 2 2 2 0 Nitrate reductase delta subunit DUF92 PF01940.11 gi|284166511|ref|YP_003404790.1| - 1.3e-62 210.8 19.3 1.3e-62 210.8 13.4 2.6 3 1 0 3 3 3 1 Integral membrane protein DUF92 TraW_N PF12477.3 gi|284166512|ref|YP_003404791.1| - 0.14 12.1 2.2 0.22 11.4 0.1 2.0 2 0 0 2 2 2 0 Sex factor F TraW protein N terminal Gly-zipper_Omp PF13488.1 gi|284166513|ref|YP_003404792.1| - 0.64 9.7 6.6 2 8.1 4.6 1.9 1 1 0 1 1 1 0 Glycine zipper SKG6 PF08693.5 gi|284166513|ref|YP_003404792.1| - 9 5.7 11.2 4.8 6.5 3.0 2.7 2 1 0 2 2 2 0 Transmembrane alpha-helix domain Toprim_4 PF13662.1 gi|284166514|ref|YP_003404793.1| - 1.9e-09 37.3 0.6 1.9e-09 37.3 0.4 2.5 3 0 0 3 3 3 1 Toprim domain Toprim_2 PF13155.1 gi|284166514|ref|YP_003404793.1| - 0.014 15.7 0.0 0.028 14.7 0.0 1.5 1 0 0 1 1 1 0 Toprim-like Toprim PF01751.17 gi|284166514|ref|YP_003404793.1| - 0.052 13.5 0.1 0.28 11.1 0.1 2.3 1 1 0 1 1 1 0 Toprim domain HTH_20 PF12840.2 gi|284166515|ref|YP_003404794.1| - 6.2e-16 57.9 0.0 1.1e-15 57.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|284166515|ref|YP_003404794.1| - 1.1e-05 24.6 0.0 1.8e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|284166515|ref|YP_003404794.1| - 0.00019 21.0 0.0 0.00031 20.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|284166515|ref|YP_003404794.1| - 0.00089 18.8 0.0 0.0019 17.8 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|284166515|ref|YP_003404794.1| - 0.00091 18.8 0.1 0.0035 17.0 0.0 2.0 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB FaeA PF04703.7 gi|284166515|ref|YP_003404794.1| - 0.015 15.4 0.0 0.03 14.4 0.0 1.4 1 0 0 1 1 1 0 FaeA-like protein DUF2513 PF10711.4 gi|284166515|ref|YP_003404794.1| - 0.032 14.2 0.0 0.051 13.6 0.0 1.3 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) HTH_12 PF08461.5 gi|284166515|ref|YP_003404794.1| - 0.088 12.5 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain DUF3311 PF11755.3 gi|284166516|ref|YP_003404795.1| - 3.2e-15 55.3 2.9 3.8e-15 55.1 2.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) DUF2975 PF11188.3 gi|284166516|ref|YP_003404795.1| - 0.042 13.5 2.4 0.052 13.2 1.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2975) TRAP-gamma PF07074.7 gi|284166516|ref|YP_003404795.1| - 0.049 13.1 0.6 0.06 12.8 0.4 1.1 1 0 0 1 1 1 0 Translocon-associated protein, gamma subunit (TRAP-gamma) SSF PF00474.12 gi|284166517|ref|YP_003404796.1| - 5.5e-44 150.4 29.6 7.4e-44 150.0 20.5 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family adh_short_C2 PF13561.1 gi|284166518|ref|YP_003404797.1| - 7.3e-22 78.3 0.0 8.7e-22 78.0 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|284166518|ref|YP_003404797.1| - 5.1e-18 65.5 0.4 8.8e-18 64.7 0.1 1.4 2 0 0 2 2 2 1 short chain dehydrogenase KR PF08659.5 gi|284166518|ref|YP_003404797.1| - 4e-09 36.3 0.0 6e-09 35.8 0.0 1.3 1 0 0 1 1 1 1 KR domain 3HCDH_N PF02737.13 gi|284166518|ref|YP_003404797.1| - 0.012 15.2 0.0 0.021 14.4 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|284166518|ref|YP_003404797.1| - 0.045 14.1 0.0 0.1 13.0 0.0 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent YjeF_N PF03853.10 gi|284166518|ref|YP_003404797.1| - 0.084 12.4 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 YjeF-related protein N-terminus NAD_binding_10 PF13460.1 gi|284166518|ref|YP_003404797.1| - 0.11 12.5 0.1 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 NADH(P)-binding Eno-Rase_NADH_b PF12242.3 gi|284166518|ref|YP_003404797.1| - 0.13 12.0 0.0 0.25 11.1 0.0 1.4 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Shikimate_DH PF01488.15 gi|284166518|ref|YP_003404797.1| - 0.13 12.3 0.0 0.33 11.0 0.0 1.6 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase Lum_binding PF00677.12 gi|284166519|ref|YP_003404798.1| - 1.2e-36 124.4 0.2 3.5e-18 65.2 0.0 2.0 2 0 0 2 2 2 2 Lumazine binding domain LacY_symp PF01306.14 gi|284166520|ref|YP_003404799.1| - 0.012 14.1 0.1 0.014 13.9 0.1 1.0 1 0 0 1 1 1 0 LacY proton/sugar symporter DUF4131 PF13567.1 gi|284166520|ref|YP_003404799.1| - 0.018 14.4 0.0 0.019 14.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF2717 PF10911.3 gi|284166520|ref|YP_003404799.1| - 0.03 13.7 0.1 0.089 12.2 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2717) DUF3265 PF11665.3 gi|284166521|ref|YP_003404800.1| - 0.1 12.4 0.1 0.15 11.9 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3265) UvrD-helicase PF00580.16 gi|284166523|ref|YP_003404802.1| - 1.8e-25 89.9 0.4 5.3e-12 45.6 0.0 2.3 2 0 0 2 2 2 2 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|284166523|ref|YP_003404802.1| - 5.6e-12 45.7 0.9 1.3e-07 31.4 0.0 2.8 3 1 0 3 3 3 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.1 gi|284166523|ref|YP_003404802.1| - 1.4e-09 37.6 0.7 3e-09 36.5 0.1 1.9 2 0 0 2 2 1 1 Part of AAA domain UvrD_C_2 PF13538.1 gi|284166523|ref|YP_003404802.1| - 7.6e-07 29.2 1.8 1.8e-05 24.7 0.3 3.3 2 1 0 2 2 2 1 UvrD-like helicase C-terminal domain AAA_30 PF13604.1 gi|284166523|ref|YP_003404802.1| - 3.5e-06 26.7 0.9 0.0088 15.6 0.0 3.2 3 0 0 3 3 3 2 AAA domain Viral_helicase1 PF01443.13 gi|284166523|ref|YP_003404802.1| - 1.4e-05 24.7 0.1 4 6.8 0.0 4.1 3 1 0 3 3 3 3 Viral (Superfamily 1) RNA helicase AAA_22 PF13401.1 gi|284166523|ref|YP_003404802.1| - 7.8e-05 22.8 0.1 0.2 11.7 0.0 3.2 3 0 0 3 3 3 2 AAA domain Herpes_ori_bp PF02399.10 gi|284166523|ref|YP_003404802.1| - 0.00011 20.3 0.0 0.00017 19.7 0.0 1.2 1 0 0 1 1 1 1 Origin of replication binding protein AAA_11 PF13086.1 gi|284166523|ref|YP_003404802.1| - 0.00052 19.6 0.0 0.001 18.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain DEAD PF00270.24 gi|284166523|ref|YP_003404802.1| - 0.0017 17.8 0.0 0.89 9.0 0.0 2.6 2 0 0 2 2 2 2 DEAD/DEAH box helicase DUF2075 PF09848.4 gi|284166523|ref|YP_003404802.1| - 0.0038 16.2 0.0 1.4 7.8 0.0 3.1 3 0 0 3 3 3 1 Uncharacterized conserved protein (DUF2075) AAA_25 PF13481.1 gi|284166523|ref|YP_003404802.1| - 0.0065 15.8 0.2 0.22 10.8 0.0 3.1 3 0 0 3 3 3 1 AAA domain AAA_12 PF13087.1 gi|284166523|ref|YP_003404802.1| - 0.017 14.5 0.1 0.14 11.4 0.1 2.2 2 0 0 2 2 2 0 AAA domain zf-ribbon_3 PF13248.1 gi|284166524|ref|YP_003404803.1| - 0.0011 18.0 0.8 0.16 11.2 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|284166524|ref|YP_003404803.1| - 0.0066 16.2 0.7 0.011 15.5 0.5 1.4 1 1 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|284166524|ref|YP_003404803.1| - 0.0078 15.6 1.0 2.8 7.5 0.0 2.1 2 0 0 2 2 2 2 zinc-ribbon domain zf-HYPF PF07503.7 gi|284166524|ref|YP_003404803.1| - 0.012 15.0 2.3 0.17 11.2 0.1 2.3 2 0 0 2 2 2 0 HypF finger UPF0547 PF10571.4 gi|284166524|ref|YP_003404803.1| - 0.015 14.9 0.8 1.3 8.7 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF4428 PF14471.1 gi|284166524|ref|YP_003404803.1| - 0.055 13.2 0.1 0.086 12.5 0.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4428) XPA_N PF01286.13 gi|284166524|ref|YP_003404803.1| - 0.081 12.6 1.8 9.1 6.0 0.0 2.1 2 0 0 2 2 2 0 XPA protein N-terminal Zn-ribbon_8 PF09723.5 gi|284166524|ref|YP_003404803.1| - 0.1 12.5 5.5 0.82 9.6 3.7 2.0 1 1 0 1 1 1 0 Zinc ribbon domain A2L_zn_ribbon PF08792.5 gi|284166524|ref|YP_003404803.1| - 0.14 11.6 4.3 1.2 8.7 0.2 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain FYVE PF01363.16 gi|284166524|ref|YP_003404803.1| - 0.15 12.0 0.5 0.28 11.1 0.3 1.5 1 1 0 1 1 1 0 FYVE zinc finger zf-IS66 PF13005.2 gi|284166524|ref|YP_003404803.1| - 0.17 11.9 1.1 2 8.4 0.1 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Prok-RING_1 PF14446.1 gi|284166524|ref|YP_003404803.1| - 0.24 11.1 2.6 2 8.2 0.3 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 Zn_Tnp_IS1595 PF12760.2 gi|284166524|ref|YP_003404803.1| - 1.5 8.7 3.5 2.1 8.2 0.1 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|284166524|ref|YP_003404803.1| - 2.4 7.7 4.9 9.3 5.8 0.5 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-RING_3 PF14369.1 gi|284166524|ref|YP_003404803.1| - 2.6 8.1 6.1 18 5.4 4.2 2.1 1 1 0 1 1 1 0 zinc-finger DZR PF12773.2 gi|284166525|ref|YP_003404804.1| - 0.0011 18.7 0.4 0.0012 18.5 0.3 1.1 1 0 0 1 1 1 1 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|284166525|ref|YP_003404804.1| - 0.0038 16.8 1.6 0.0053 16.3 1.1 1.3 1 1 0 1 1 1 1 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.1 gi|284166525|ref|YP_003404804.1| - 0.0084 15.5 3.0 0.013 14.9 2.1 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|284166525|ref|YP_003404804.1| - 0.0092 15.1 3.1 0.013 14.6 2.2 1.3 1 0 0 1 1 1 1 zinc-ribbon domain UPF0547 PF10571.4 gi|284166525|ref|YP_003404804.1| - 0.015 14.9 2.4 0.03 14.0 1.7 1.5 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 RecR PF02132.10 gi|284166525|ref|YP_003404804.1| - 0.039 13.3 1.1 0.061 12.7 0.7 1.2 1 0 0 1 1 1 0 RecR protein A2L_zn_ribbon PF08792.5 gi|284166525|ref|YP_003404804.1| - 0.17 11.4 1.8 3.6 7.1 0.1 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain Cys_rich_CPCC PF14206.1 gi|284166525|ref|YP_003404804.1| - 0.44 10.1 3.6 0.75 9.3 2.5 1.5 1 1 0 1 1 1 0 Cysteine-rich CPCC TF_Zn_Ribbon PF08271.7 gi|284166525|ref|YP_003404804.1| - 0.5 9.7 6.2 1.3 8.3 4.3 1.7 1 1 0 1 1 1 0 TFIIB zinc-binding DUF1610 PF07754.6 gi|284166525|ref|YP_003404804.1| - 0.54 10.4 5.6 2.1 8.5 0.5 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Zn-ribbon_8 PF09723.5 gi|284166525|ref|YP_003404804.1| - 0.63 10.0 5.6 1 9.3 0.6 2.2 1 1 1 2 2 2 0 Zinc ribbon domain zf-TFIIB PF13453.1 gi|284166525|ref|YP_003404804.1| - 0.84 8.8 4.1 0.49 9.6 0.1 2.1 2 0 0 2 2 2 0 Transcription factor zinc-finger zf-C2H2_3 PF13878.1 gi|284166525|ref|YP_003404804.1| - 1.6 8.3 5.8 9.3 5.9 0.2 2.2 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO YhfH PF14149.1 gi|284166525|ref|YP_003404804.1| - 8.6 6.2 8.8 1.1e+02 2.6 0.3 2.1 1 1 1 2 2 2 0 YhfH-like protein ThiF PF00899.16 gi|284166526|ref|YP_003404805.1| - 3.2e-44 150.0 0.1 5.1e-44 149.3 0.0 1.3 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|284166526|ref|YP_003404805.1| - 2.7e-32 110.1 0.1 4.2e-32 109.5 0.1 1.3 1 0 0 1 1 1 1 MoeZ/MoeB domain Shikimate_DH PF01488.15 gi|284166526|ref|YP_003404805.1| - 0.0035 17.4 0.0 0.0056 16.7 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.1 gi|284166526|ref|YP_003404805.1| - 0.056 13.7 0.7 1.6 9.0 0.5 2.2 1 1 0 1 1 1 0 Putative NAD(P)-binding Saccharop_dh PF03435.13 gi|284166526|ref|YP_003404805.1| - 0.11 11.4 0.1 0.16 10.9 0.1 1.3 1 1 0 1 1 1 0 Saccharopine dehydrogenase PrsW-protease PF13367.1 gi|284166528|ref|YP_003404807.1| - 1.9e-38 131.5 18.4 1.9e-38 131.5 12.8 2.1 2 0 0 2 2 2 1 Protease prsW family DUF1906 PF08924.6 gi|284166529|ref|YP_003404808.1| - 0.003 17.4 0.1 0.0035 17.2 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1906) DUF402 PF04167.8 gi|284166530|ref|YP_003404809.1| - 7e-22 77.0 0.5 1.4e-21 76.0 0.4 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF402) S1 PF00575.18 gi|284166530|ref|YP_003404809.1| - 0.042 13.9 0.1 0.095 12.8 0.1 1.6 1 0 0 1 1 1 0 S1 RNA binding domain NUDIX PF00293.23 gi|284166531|ref|YP_003404810.1| - 4.3e-11 42.5 0.2 5.2e-11 42.3 0.2 1.1 1 0 0 1 1 1 1 NUDIX domain SBF PF01758.11 gi|284166532|ref|YP_003404811.1| - 7.7e-43 146.0 15.2 1.1e-42 145.5 10.5 1.2 1 0 0 1 1 1 1 Sodium Bile acid symporter family DUF4137 PF13593.1 gi|284166532|ref|YP_003404811.1| - 6.5e-14 51.7 19.4 8.1e-14 51.4 13.4 1.1 1 0 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) Mem_trans PF03547.13 gi|284166532|ref|YP_003404811.1| - 0.014 13.7 11.1 0.0069 14.7 6.0 1.7 2 0 0 2 2 2 0 Membrane transport protein Zn-ribbon_8 PF09723.5 gi|284166533|ref|YP_003404812.1| - 2e-06 27.6 0.9 2.4e-06 27.3 0.6 1.1 1 0 0 1 1 1 1 Zinc ribbon domain Sgf11 PF08209.6 gi|284166533|ref|YP_003404812.1| - 2.3e-05 23.5 1.5 0.086 12.1 0.1 2.1 2 0 0 2 2 2 2 Sgf11 (transcriptional regulation protein) Rad50_zn_hook PF04423.9 gi|284166533|ref|YP_003404812.1| - 0.00059 19.2 0.5 0.0047 16.3 0.0 2.0 2 0 0 2 2 2 1 Rad50 zinc hook motif zf-ribbon_3 PF13248.1 gi|284166533|ref|YP_003404812.1| - 0.00067 18.7 2.5 0.43 9.8 0.2 2.1 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|284166533|ref|YP_003404812.1| - 0.0045 16.7 0.6 0.0068 16.1 0.4 1.4 1 1 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.4 gi|284166533|ref|YP_003404812.1| - 0.011 15.4 5.0 0.21 11.2 0.6 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-dskA_traR PF01258.12 gi|284166533|ref|YP_003404812.1| - 0.017 14.8 0.5 1.6 8.5 0.0 2.1 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger zf-C2H2 PF00096.21 gi|284166533|ref|YP_003404812.1| - 0.021 15.1 1.9 3 8.3 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zinc_ribbon_2 PF13240.1 gi|284166533|ref|YP_003404812.1| - 0.023 14.1 0.3 0.29 10.6 0.2 2.0 1 1 1 2 2 2 0 zinc-ribbon domain RNHCP PF12647.2 gi|284166533|ref|YP_003404812.1| - 0.034 13.9 0.3 0.037 13.8 0.2 1.1 1 0 0 1 1 1 0 RNHCP domain Elf1 PF05129.8 gi|284166533|ref|YP_003404812.1| - 0.059 13.0 0.1 0.076 12.7 0.1 1.2 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like HypA PF01155.14 gi|284166533|ref|YP_003404812.1| - 0.071 12.8 0.2 0.071 12.8 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Prok-RING_4 PF14447.1 gi|284166533|ref|YP_003404812.1| - 0.077 12.5 2.7 0.096 12.2 0.1 1.9 2 0 0 2 2 2 0 Prokaryotic RING finger family 4 zf-Di19 PF05605.7 gi|284166533|ref|YP_003404812.1| - 0.084 13.0 3.1 6.9 6.8 2.1 2.1 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding zf-RING_4 PF14570.1 gi|284166533|ref|YP_003404812.1| - 0.087 12.4 0.8 0.75 9.4 0.1 2.0 2 0 0 2 2 2 0 RING/Ubox like zinc-binding domain zf-AN1 PF01428.11 gi|284166533|ref|YP_003404812.1| - 0.091 12.6 0.3 14 5.6 0.1 2.0 2 0 0 2 2 2 0 AN1-like Zinc finger zf-C3HC4_3 PF13920.1 gi|284166533|ref|YP_003404812.1| - 0.091 12.4 3.6 2.1 8.0 2.6 2.0 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) DUF2072 PF09845.4 gi|284166533|ref|YP_003404812.1| - 0.11 12.3 0.4 0.13 12.2 0.3 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) Rubredoxin PF00301.15 gi|284166533|ref|YP_003404812.1| - 0.13 12.1 0.7 12 5.8 0.1 2.1 2 0 0 2 2 2 0 Rubredoxin DUF329 PF03884.9 gi|284166533|ref|YP_003404812.1| - 0.13 11.8 2.7 5.1 6.7 0.2 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF329) CpXC PF14353.1 gi|284166533|ref|YP_003404812.1| - 0.19 11.7 0.9 3 7.7 0.1 2.0 1 1 1 2 2 2 0 CpXC protein DUF2256 PF10013.4 gi|284166533|ref|YP_003404812.1| - 0.23 11.2 0.8 5.8 6.7 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2256) zf-ISL3 PF14690.1 gi|284166533|ref|YP_003404812.1| - 0.24 11.4 1.5 14 5.8 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-H2C2_2 PF13465.1 gi|284166533|ref|YP_003404812.1| - 0.26 11.6 2.8 4.1 7.8 0.2 2.2 2 0 0 2 2 2 0 Zinc-finger double domain TerY-C PF15616.1 gi|284166533|ref|YP_003404812.1| - 0.36 10.7 2.3 10 6.0 0.2 2.0 1 1 1 2 2 2 0 TerY-C metal binding domain TF_Zn_Ribbon PF08271.7 gi|284166533|ref|YP_003404812.1| - 0.38 10.1 6.2 1.7 8.0 0.5 2.4 2 1 0 2 2 2 0 TFIIB zinc-binding zf-C2HC_2 PF13913.1 gi|284166533|ref|YP_003404812.1| - 0.8 9.4 0.3 0.8 9.4 0.2 2.1 3 0 0 3 3 3 0 zinc-finger of a C2HC-type DNA_ligase_ZBD PF03119.11 gi|284166533|ref|YP_003404812.1| - 0.86 9.3 4.6 4.2 7.1 0.7 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-Mss51 PF13824.1 gi|284166533|ref|YP_003404812.1| - 0.98 9.3 3.4 8.3 6.3 0.2 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 NAD_binding_10 PF13460.1 gi|284166534|ref|YP_003404813.1| - 2e-28 99.6 2.0 2.8e-28 99.1 1.4 1.2 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|284166534|ref|YP_003404813.1| - 4.1e-14 52.3 0.0 6e-14 51.8 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family Epimerase PF01370.16 gi|284166534|ref|YP_003404813.1| - 8e-13 48.3 0.1 1.1e-12 47.8 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|284166534|ref|YP_003404813.1| - 4.3e-08 32.2 0.0 5.7e-08 31.7 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|284166534|ref|YP_003404813.1| - 1.1e-06 27.7 0.1 6.7e-06 25.1 0.0 2.0 2 0 0 2 2 2 1 RmlD substrate binding domain adh_short PF00106.20 gi|284166534|ref|YP_003404813.1| - 0.0012 18.7 2.1 0.0043 16.9 1.4 2.0 1 1 0 1 1 1 1 short chain dehydrogenase NAD_binding_4 PF07993.7 gi|284166534|ref|YP_003404813.1| - 0.019 13.9 4.4 1.9 7.3 0.1 2.9 1 1 2 3 3 3 0 Male sterility protein KR PF08659.5 gi|284166534|ref|YP_003404813.1| - 0.033 13.8 0.3 0.076 12.6 0.2 1.6 1 1 0 1 1 1 0 KR domain DapB_N PF01113.15 gi|284166534|ref|YP_003404813.1| - 0.05 13.5 0.0 0.092 12.6 0.0 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus DFP PF04127.10 gi|284166534|ref|YP_003404813.1| - 0.054 13.1 0.1 2.3 7.8 0.0 2.1 2 0 0 2 2 2 0 DNA / pantothenate metabolism flavoprotein NAD_binding_2 PF03446.10 gi|284166534|ref|YP_003404813.1| - 0.11 12.3 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Polysacc_synt_2 PF02719.10 gi|284166534|ref|YP_003404813.1| - 0.14 11.0 0.6 1.6 7.5 0.4 2.3 1 1 0 1 1 1 0 Polysaccharide biosynthesis protein TctB PF07331.6 gi|284166535|ref|YP_003404814.1| - 0.028 14.0 5.3 0.04 13.5 3.7 1.3 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family DUF3149 PF11346.3 gi|284166535|ref|YP_003404814.1| - 0.25 10.9 1.0 0.49 9.9 0.7 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3149) HTH_20 PF12840.2 gi|284166536|ref|YP_003404815.1| - 6.6e-09 35.4 0.0 1.2e-08 34.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|284166536|ref|YP_003404815.1| - 1.6e-06 27.5 0.1 2.9e-06 26.7 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|284166536|ref|YP_003404815.1| - 3.3e-06 26.6 0.0 4.6e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|284166536|ref|YP_003404815.1| - 7.1e-06 25.3 0.0 1.4e-05 24.3 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|284166536|ref|YP_003404815.1| - 9.6e-06 25.1 0.0 1.8e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|284166536|ref|YP_003404815.1| - 1.7e-05 24.3 0.0 3.7e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|284166536|ref|YP_003404815.1| - 0.00021 20.9 0.0 0.00035 20.2 0.0 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|284166536|ref|YP_003404815.1| - 0.00023 21.3 0.0 0.00036 20.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.9 gi|284166536|ref|YP_003404815.1| - 0.00045 19.9 0.0 0.00076 19.1 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_36 PF13730.1 gi|284166536|ref|YP_003404815.1| - 0.0029 17.6 0.0 0.0048 16.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|284166536|ref|YP_003404815.1| - 0.012 15.3 0.3 0.092 12.4 0.0 2.0 2 0 0 2 2 2 0 MarR family HTH_AsnC-type PF13404.1 gi|284166536|ref|YP_003404815.1| - 0.018 14.5 0.0 0.039 13.5 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Fe_dep_repress PF01325.14 gi|284166536|ref|YP_003404815.1| - 0.023 14.6 0.0 0.051 13.5 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_Tnp_ISL3 PF13542.1 gi|284166536|ref|YP_003404815.1| - 0.058 12.5 0.1 0.3 10.2 0.1 2.2 1 1 1 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 HTH_7 PF02796.10 gi|284166536|ref|YP_003404815.1| - 0.13 12.1 0.0 4.1 7.3 0.0 2.6 2 1 1 3 3 3 0 Helix-turn-helix domain of resolvase Rrf2 PF02082.15 gi|284166536|ref|YP_003404815.1| - 0.14 12.3 0.0 0.32 11.1 0.0 1.7 1 1 1 2 2 2 0 Transcriptional regulator Rax2 PF12768.2 gi|284166537|ref|YP_003404816.1| - 0.015 14.5 0.3 0.015 14.4 0.2 1.1 1 0 0 1 1 1 0 Cortical protein marker for cell polarity DUF2198 PF09964.4 gi|284166537|ref|YP_003404816.1| - 0.19 11.5 4.3 1.4 8.7 2.1 2.3 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2198) Aldo_ket_red PF00248.16 gi|284166539|ref|YP_003404818.1| - 1.9e-50 171.2 0.0 2.2e-50 171.0 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family PqqD PF05402.7 gi|284166539|ref|YP_003404818.1| - 0.058 13.4 0.4 0.19 11.7 0.3 1.9 1 0 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) DUF1469 PF07332.6 gi|284166540|ref|YP_003404819.1| - 0.0034 17.1 1.4 0.004 16.8 1.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1469) DUF3366 PF11846.3 gi|284166540|ref|YP_003404819.1| - 0.012 15.5 0.7 0.013 15.4 0.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3366) UPF0016 PF01169.14 gi|284166540|ref|YP_003404819.1| - 2 8.5 7.6 0.22 11.6 1.7 1.8 1 1 1 2 2 2 0 Uncharacterized protein family UPF0016 Pterin_bind PF00809.17 gi|284166542|ref|YP_003404821.1| - 1e-67 227.5 0.4 1.7e-67 226.8 0.3 1.4 1 0 0 1 1 1 1 Pterin binding enzyme Mur_ligase_M PF08245.7 gi|284166542|ref|YP_003404821.1| - 3.2e-10 40.3 0.0 6.2e-10 39.4 0.0 1.5 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.16 gi|284166542|ref|YP_003404821.1| - 8.7e-09 35.3 0.0 4.3e-08 33.0 0.0 2.3 2 0 0 2 2 2 1 Mur ligase family, glutamate ligase domain PCMT PF01135.14 gi|284166542|ref|YP_003404821.1| - 0.19 11.2 0.4 0.37 10.2 0.3 1.4 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Exo_endo_phos PF03372.18 gi|284166543|ref|YP_003404822.1| - 5.7e-09 36.2 0.3 7.4e-09 35.8 0.2 1.2 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Cupin_2 PF07883.6 gi|284166544|ref|YP_003404823.1| - 9.3e-11 41.0 0.5 1.4e-10 40.5 0.4 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|284166544|ref|YP_003404823.1| - 0.00085 19.0 0.0 0.0011 18.6 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.17 gi|284166544|ref|YP_003404823.1| - 0.0013 18.1 0.0 0.0016 17.9 0.0 1.2 1 0 0 1 1 1 1 Cupin AraC_binding_2 PF14525.1 gi|284166544|ref|YP_003404823.1| - 0.012 15.2 0.2 0.013 15.0 0.1 1.1 1 0 0 1 1 1 0 AraC-binding-like domain Cupin_3 PF05899.7 gi|284166544|ref|YP_003404823.1| - 0.025 13.9 0.1 0.037 13.4 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF861) DRTGG PF07085.7 gi|284166544|ref|YP_003404823.1| - 0.11 12.1 0.0 0.2 11.2 0.0 1.4 2 0 0 2 2 2 0 DRTGG domain ABC_tran PF00005.22 gi|284166545|ref|YP_003404824.1| - 9.9e-30 103.6 0.0 1.4e-29 103.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284166545|ref|YP_003404824.1| - 1.8e-11 44.5 0.0 1.4e-09 38.3 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|284166545|ref|YP_003404824.1| - 0.0014 18.1 0.3 0.0025 17.3 0.2 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|284166545|ref|YP_003404824.1| - 0.012 15.9 0.0 0.017 15.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|284166545|ref|YP_003404824.1| - 0.029 13.9 0.1 0.068 12.7 0.1 1.6 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|284166545|ref|YP_003404824.1| - 0.04 12.9 0.0 0.13 11.2 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.1 gi|284166545|ref|YP_003404824.1| - 0.06 13.4 0.1 0.81 9.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|284166545|ref|YP_003404824.1| - 0.075 12.9 0.0 0.14 12.0 0.0 1.6 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_13 PF13166.1 gi|284166545|ref|YP_003404824.1| - 0.16 10.4 0.0 1.3 7.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.17 gi|284166545|ref|YP_003404824.1| - 0.18 11.1 0.6 0.3 10.5 0.4 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain PSII_BNR PF14870.1 gi|284166546|ref|YP_003404825.1| - 0.00016 20.7 3.8 0.027 13.4 0.1 3.1 1 1 1 2 2 2 2 Photosynthesis system II assembly factor YCF48 UCR_Fe-S_N PF10399.4 gi|284166546|ref|YP_003404825.1| - 0.053 12.6 1.8 0.18 11.0 1.3 2.0 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Acetyltransf_1 PF00583.19 gi|284166548|ref|YP_003404827.1| - 4.4e-16 58.6 0.2 1.2e-15 57.3 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family FR47 PF08445.5 gi|284166548|ref|YP_003404827.1| - 9.9e-11 41.2 0.0 3.8e-10 39.3 0.0 1.8 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_10 PF13673.1 gi|284166548|ref|YP_003404827.1| - 1.9e-08 34.4 0.0 3.3e-08 33.6 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|284166548|ref|YP_003404827.1| - 2.5e-08 33.9 0.0 4e-08 33.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|284166548|ref|YP_003404827.1| - 1.6e-07 31.2 0.0 2.4e-07 30.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|284166548|ref|YP_003404827.1| - 9.9e-06 25.7 0.0 1.5e-05 25.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|284166548|ref|YP_003404827.1| - 0.00015 21.6 0.0 0.00021 21.1 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|284166548|ref|YP_003404827.1| - 0.001 19.0 0.0 0.0012 18.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|284166548|ref|YP_003404827.1| - 0.0011 18.8 0.0 0.0027 17.5 0.0 1.6 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_13 PF13880.1 gi|284166548|ref|YP_003404827.1| - 0.031 14.0 0.1 0.13 11.9 0.0 2.0 2 0 0 2 2 2 0 ESCO1/2 acetyl-transferase Acetyltransf_5 PF13444.1 gi|284166548|ref|YP_003404827.1| - 0.045 14.3 0.2 0.22 12.1 0.0 2.0 1 1 1 2 2 2 0 Acetyltransferase (GNAT) domain CDP-OH_P_transf PF01066.16 gi|284166549|ref|YP_003404828.1| - 1.8e-15 57.0 4.1 1.8e-15 57.0 2.8 1.9 2 0 0 2 2 2 1 CDP-alcohol phosphatidyltransferase DUF3186 PF11382.3 gi|284166549|ref|YP_003404828.1| - 0.038 13.1 0.0 0.038 13.1 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3186) PHP_C PF13263.1 gi|284166550|ref|YP_003404829.1| - 1.4e-22 78.9 0.5 8.8e-22 76.3 0.2 2.2 2 0 0 2 2 2 1 PHP-associated PHP PF02811.14 gi|284166550|ref|YP_003404829.1| - 5e-16 58.9 0.3 9.2e-15 54.8 0.2 2.0 1 1 0 1 1 1 1 PHP domain DUF457 PF04307.9 gi|284166551|ref|YP_003404830.1| - 0.00022 20.6 16.8 0.00025 20.4 10.2 2.0 1 1 1 2 2 2 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) FAM165 PF14981.1 gi|284166551|ref|YP_003404830.1| - 0.13 11.7 0.7 6.4 6.3 0.0 2.4 2 0 0 2 2 2 0 FAM165 family HTH_10 PF04967.7 gi|284166552|ref|YP_003404831.1| - 2.8e-17 62.0 0.1 5.9e-17 61.0 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|284166552|ref|YP_003404831.1| - 0.0013 18.3 0.2 0.0035 16.9 0.1 1.8 1 0 0 1 1 1 1 MarR family Sigma70_r4 PF04545.11 gi|284166552|ref|YP_003404831.1| - 0.0038 16.4 0.3 0.021 14.1 0.1 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_IclR PF09339.5 gi|284166552|ref|YP_003404831.1| - 0.069 12.7 0.1 0.22 11.1 0.0 1.9 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF4188 PF13826.1 gi|284166553|ref|YP_003404832.1| - 5.1e-41 139.4 0.0 6.3e-41 139.1 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4188) Dehydratase_hem PF13816.1 gi|284166553|ref|YP_003404832.1| - 5.6e-05 22.3 0.0 6.9e-05 22.0 0.0 1.1 1 0 0 1 1 1 1 Haem-containing dehydratase CPSase_L_D2 PF02786.12 gi|284166554|ref|YP_003404833.1| - 3.9e-98 326.8 0.2 2e-57 193.8 0.0 2.6 2 1 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|284166554|ref|YP_003404833.1| - 6.4e-46 154.9 0.3 7.1e-22 77.6 0.0 2.6 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, N-terminal domain ATP-grasp_4 PF13535.1 gi|284166554|ref|YP_003404833.1| - 2.3e-32 112.2 1.3 1.6e-18 67.1 0.0 3.0 3 1 0 3 3 3 2 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|284166554|ref|YP_003404833.1| - 3.9e-25 88.2 0.1 1.7e-15 56.6 0.0 4.0 3 1 0 3 3 3 3 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D3 PF02787.14 gi|284166554|ref|YP_003404833.1| - 5.1e-21 74.7 0.0 1.1e-20 73.6 0.0 1.6 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATP-grasp PF02222.17 gi|284166554|ref|YP_003404833.1| - 1.9e-13 50.1 0.0 7.5e-09 35.1 0.0 2.3 2 0 0 2 2 2 2 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|284166554|ref|YP_003404833.1| - 2e-12 47.2 0.0 4.5e-06 26.6 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|284166554|ref|YP_003404833.1| - 4.7e-12 45.7 0.0 2.3e-08 33.6 0.0 2.5 2 1 0 2 2 2 2 D-ala D-ala ligase C-terminus RimK PF08443.6 gi|284166554|ref|YP_003404833.1| - 2.9e-05 23.6 0.0 0.00026 20.5 0.0 2.4 2 0 0 2 2 2 1 RimK-like ATP-grasp domain Glyco_transf_9 PF01075.12 gi|284166554|ref|YP_003404833.1| - 0.018 14.3 0.1 11 5.0 0.0 3.2 3 0 0 3 3 3 0 Glycosyltransferase family 9 (heptosyltransferase) PAS_9 PF13426.1 gi|284166555|ref|YP_003404834.1| - 4.1e-17 62.4 0.1 1.5e-16 60.6 0.1 2.0 1 0 0 1 1 1 1 PAS domain HATPase_c PF02518.21 gi|284166555|ref|YP_003404834.1| - 1.5e-16 60.1 0.1 3.7e-16 58.8 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|284166555|ref|YP_003404834.1| - 1e-15 57.4 0.1 2.9e-15 56.0 0.1 1.9 1 0 0 1 1 1 1 PAS fold HisKA PF00512.20 gi|284166555|ref|YP_003404834.1| - 4e-12 45.9 0.7 4e-12 45.9 0.5 3.0 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|284166555|ref|YP_003404834.1| - 6.2e-12 45.5 3.1 6.6e-12 45.4 0.4 2.5 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.1 gi|284166555|ref|YP_003404834.1| - 8.6e-07 28.6 0.0 3.9e-06 26.5 0.0 2.2 1 0 0 1 1 1 1 PAS domain GAF_3 PF13492.1 gi|284166555|ref|YP_003404834.1| - 1.1e-06 28.7 0.1 4e-06 26.9 0.0 2.0 2 0 0 2 2 2 1 GAF domain HATPase_c_5 PF14501.1 gi|284166555|ref|YP_003404834.1| - 1.2e-06 28.1 0.0 2e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 GHKL domain GAF_2 PF13185.1 gi|284166555|ref|YP_003404834.1| - 1.2e-06 29.0 3.0 2.1e-06 28.2 0.6 2.6 2 0 0 2 2 2 1 GAF domain Response_reg PF00072.19 gi|284166555|ref|YP_003404834.1| - 7.6e-06 25.9 0.0 1.7e-05 24.7 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c_2 PF13581.1 gi|284166555|ref|YP_003404834.1| - 1.1e-05 25.2 0.4 4.6e-05 23.2 0.0 2.4 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|284166555|ref|YP_003404834.1| - 0.0045 16.6 0.0 0.0088 15.7 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.1 gi|284166555|ref|YP_003404834.1| - 0.024 14.9 0.0 0.057 13.6 0.0 1.7 1 0 0 1 1 1 0 PAS domain Methyltransf_11 PF08241.7 gi|284166557|ref|YP_003404836.1| - 3.9e-08 33.6 0.0 6.5e-08 32.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|284166557|ref|YP_003404836.1| - 3.1e-06 27.0 0.0 4.1e-06 26.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|284166557|ref|YP_003404836.1| - 0.0011 19.4 0.1 0.0023 18.3 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|284166557|ref|YP_003404836.1| - 0.0019 18.7 0.3 0.017 15.6 0.0 2.1 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|284166557|ref|YP_003404836.1| - 0.005 17.1 0.0 0.009 16.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|284166557|ref|YP_003404836.1| - 0.036 14.0 4.6 0.066 13.2 3.2 1.7 1 1 0 1 1 1 0 Methyltransferase domain Aldo_ket_red PF00248.16 gi|284166558|ref|YP_003404837.1| - 4.7e-27 94.5 0.0 5.5e-27 94.3 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family PDZ_1 PF12812.2 gi|284166560|ref|YP_003404839.1| - 0.12 12.2 0.0 0.16 11.8 0.0 1.2 1 0 0 1 1 1 0 PDZ-like domain Pyr_redox_2 PF07992.9 gi|284166561|ref|YP_003404840.1| - 8.6e-33 113.9 0.1 1.1e-32 113.5 0.1 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|284166561|ref|YP_003404840.1| - 8.3e-12 45.3 0.4 3.6e-06 27.3 0.0 3.3 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|284166561|ref|YP_003404840.1| - 3e-05 24.1 3.1 0.0075 16.3 0.9 3.6 3 1 1 4 4 4 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|284166561|ref|YP_003404840.1| - 0.002 18.1 0.6 0.16 11.9 0.0 2.9 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|284166561|ref|YP_003404840.1| - 0.0022 16.5 0.0 0.03 12.7 0.0 2.4 3 0 0 3 3 3 1 HI0933-like protein DAO PF01266.19 gi|284166561|ref|YP_003404840.1| - 0.005 15.7 4.4 0.94 8.3 0.0 3.1 4 0 0 4 4 4 2 FAD dependent oxidoreductase NAD_binding_9 PF13454.1 gi|284166561|ref|YP_003404840.1| - 0.15 11.7 5.9 1.1 8.9 0.0 3.2 3 1 0 4 4 4 0 FAD-NAD(P)-binding DLH PF01738.13 gi|284166562|ref|YP_003404841.1| - 0.02 14.1 0.0 0.03 13.6 0.0 1.2 1 0 0 1 1 1 0 Dienelactone hydrolase family Polysacc_deac_1 PF01522.16 gi|284166563|ref|YP_003404842.1| - 8.5e-20 70.6 0.0 1.6e-19 69.7 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase Coprogen_oxidas PF01218.13 gi|284166563|ref|YP_003404842.1| - 0.048 12.2 0.0 0.083 11.4 0.0 1.3 1 0 0 1 1 1 0 Coproporphyrinogen III oxidase MFS_1 PF07690.11 gi|284166564|ref|YP_003404843.1| - 1.5e-26 92.9 40.7 1.5e-26 92.9 28.2 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily Peripla_BP_6 PF13458.1 gi|284166565|ref|YP_003404844.1| - 9.6e-38 130.3 2.1 1.2e-37 130.0 1.4 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|284166565|ref|YP_003404844.1| - 1.7e-18 66.5 0.1 2.4e-18 66.0 0.1 1.2 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|284166565|ref|YP_003404844.1| - 7.5e-12 44.6 0.1 8.3e-05 21.4 0.0 2.6 3 0 0 3 3 3 2 Periplasmic binding protein domain TAT_signal PF10518.4 gi|284166565|ref|YP_003404844.1| - 0.044 13.8 0.3 0.16 12.0 0.0 2.1 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence MCPsignal PF00015.16 gi|284166566|ref|YP_003404845.1| - 7.4e-37 126.9 82.1 1.3e-36 126.1 29.4 4.3 2 1 2 4 4 4 3 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|284166566|ref|YP_003404845.1| - 6.3e-10 39.0 0.1 6.3e-10 39.0 0.1 5.1 5 1 0 5 5 5 2 HAMP domain Laminin_II PF06009.7 gi|284166566|ref|YP_003404845.1| - 2.9e-05 23.8 45.0 0.00092 18.9 5.8 5.7 3 2 2 5 5 5 3 Laminin Domain II IncA PF04156.9 gi|284166566|ref|YP_003404845.1| - 0.0054 16.3 6.2 0.0054 16.3 4.3 6.0 2 1 3 5 5 5 2 IncA protein Bcr-Abl_Oligo PF09036.5 gi|284166566|ref|YP_003404845.1| - 0.02 14.8 1.3 0.24 11.3 0.1 2.9 2 0 0 2 2 2 0 Bcr-Abl oncoprotein oligomerisation domain DUF948 PF06103.6 gi|284166566|ref|YP_003404845.1| - 0.051 13.4 35.5 0.48 10.3 0.6 6.0 3 2 3 6 6 6 0 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.7 gi|284166566|ref|YP_003404845.1| - 2.1 8.1 32.7 0.063 13.0 2.1 5.3 2 2 3 5 5 5 0 Protein of unknown function (DUF1664) Spc7 PF08317.6 gi|284166566|ref|YP_003404845.1| - 3.1 6.3 37.9 0.021 13.5 4.1 3.9 1 1 1 3 3 3 0 Spc7 kinetochore protein Amino_oxidase PF01593.19 gi|284166567|ref|YP_003404846.1| - 7.2e-12 45.1 1.6 6.7e-06 25.4 0.0 3.0 2 1 0 2 2 2 2 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|284166567|ref|YP_003404846.1| - 5e-11 42.4 0.0 1.5e-10 40.9 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|284166567|ref|YP_003404846.1| - 2.2e-05 23.5 1.9 0.0023 16.8 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|284166567|ref|YP_003404846.1| - 0.00015 20.7 1.3 0.0045 15.8 0.0 2.2 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.2 gi|284166567|ref|YP_003404846.1| - 0.00071 18.7 0.8 0.0011 18.0 0.1 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|284166567|ref|YP_003404846.1| - 0.00083 19.4 0.0 0.019 15.0 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|284166567|ref|YP_003404846.1| - 0.0052 17.1 0.2 0.015 15.6 0.1 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|284166567|ref|YP_003404846.1| - 0.0081 16.0 0.0 0.064 13.1 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|284166567|ref|YP_003404846.1| - 0.14 10.5 0.3 0.86 7.9 0.1 2.0 2 0 0 2 2 2 0 HI0933-like protein Sporozoite_P67 PF05642.6 gi|284166567|ref|YP_003404846.1| - 3.9 5.2 5.4 5.7 4.6 3.7 1.2 1 0 0 1 1 1 0 Sporozoite P67 surface antigen GHMP_kinases_N PF00288.21 gi|284166568|ref|YP_003404847.1| - 3.3e-15 55.8 2.7 3.3e-15 55.8 1.9 1.8 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|284166568|ref|YP_003404847.1| - 1.3e-06 28.5 0.1 3.3e-06 27.1 0.0 1.7 1 0 0 1 1 1 1 GHMP kinases C terminal ATP_synt_I PF03899.10 gi|284166569|ref|YP_003404848.1| - 2.2 8.4 17.0 0.59 10.3 3.8 2.1 1 1 1 2 2 2 0 ATP synthase I chain CP12 PF02672.10 gi|284166570|ref|YP_003404849.1| - 2.6 8.5 5.5 0.95 9.9 0.1 2.5 2 1 0 2 2 2 0 CP12 domain SOR_SNZ PF01680.12 gi|284166571|ref|YP_003404850.1| - 7e-102 339.3 9.8 9e-102 339.0 6.8 1.1 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.9 gi|284166571|ref|YP_003404850.1| - 1e-08 34.5 4.0 1.4e-05 24.3 0.2 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.12 gi|284166571|ref|YP_003404850.1| - 0.0076 15.1 1.9 0.67 8.7 0.0 2.2 1 1 1 2 2 2 2 Dihydrouridine synthase (Dus) IGPS PF00218.16 gi|284166571|ref|YP_003404850.1| - 0.015 14.3 0.3 0.12 11.4 0.0 2.3 2 1 0 2 2 2 0 Indole-3-glycerol phosphate synthase OMPdecase PF00215.19 gi|284166571|ref|YP_003404850.1| - 0.037 13.4 1.1 2.6 7.3 0.0 2.5 2 1 1 3 3 3 0 Orotidine 5'-phosphate decarboxylase / HUMPS family MttA_Hcf106 PF02416.11 gi|284166571|ref|YP_003404850.1| - 0.061 12.4 2.6 0.62 9.2 0.0 2.8 3 0 0 3 3 3 0 mttA/Hcf106 family ADC PF06314.6 gi|284166572|ref|YP_003404851.1| - 1e-17 64.2 0.0 1.5e-17 63.7 0.0 1.2 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) PQQ_2 PF13360.1 gi|284166573|ref|YP_003404852.1| - 6e-26 91.3 9.2 5.6e-21 75.0 3.9 3.2 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.1 gi|284166573|ref|YP_003404852.1| - 3e-16 59.0 21.1 0.0012 18.9 0.1 7.3 7 0 0 7 7 7 5 PQQ-like domain PQQ PF01011.16 gi|284166573|ref|YP_003404852.1| - 1.6e-13 49.4 7.4 0.018 14.5 0.1 6.4 6 0 0 6 6 6 5 PQQ enzyme repeat DUF3954 PF13128.1 gi|284166573|ref|YP_003404852.1| - 0.076 12.4 0.0 1.3 8.5 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3954) PQQ_2 PF13360.1 gi|284166574|ref|YP_003404853.1| - 6.2e-31 107.6 13.1 3e-22 79.2 6.3 2.2 2 0 0 2 2 2 2 PQQ-like domain PQQ_3 PF13570.1 gi|284166574|ref|YP_003404853.1| - 9.6e-20 70.2 29.0 0.00089 19.4 0.4 7.5 6 0 0 6 6 6 6 PQQ-like domain PQQ PF01011.16 gi|284166574|ref|YP_003404853.1| - 2.2e-19 67.9 5.1 0.003 16.9 0.0 6.5 6 0 0 6 6 6 5 PQQ enzyme repeat DUF1405 PF07187.6 gi|284166575|ref|YP_003404854.1| - 1.4e-44 151.7 15.6 1.9e-44 151.2 10.8 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1405) tRNA-synt_1 PF00133.17 gi|284166577|ref|YP_003404856.1| - 1.1e-126 423.3 0.1 7e-126 420.6 0.1 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|284166577|ref|YP_003404856.1| - 3.7e-34 117.6 1.4 3.9e-34 117.6 0.1 1.7 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|284166577|ref|YP_003404856.1| - 1.3e-24 86.6 0.9 1.1e-11 44.0 0.0 3.6 3 2 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.1 gi|284166577|ref|YP_003404856.1| - 2.5e-06 26.9 0.0 6e-06 25.6 0.0 1.7 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|284166577|ref|YP_003404856.1| - 9.2e-05 21.6 0.0 0.0073 15.4 0.0 2.5 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|284166577|ref|YP_003404856.1| - 0.0033 16.1 0.0 0.0093 14.6 0.0 1.7 1 0 0 1 1 1 1 tRNA synthetases class I (K) Lar_restr_allev PF14354.1 gi|284166577|ref|YP_003404856.1| - 0.019 15.2 1.9 4.9 7.5 0.5 3.5 2 1 0 2 2 2 0 Restriction alleviation protein Lar SpecificRecomb PF10136.4 gi|284166577|ref|YP_003404856.1| - 0.49 8.3 0.0 0.71 7.8 0.0 1.1 1 0 0 1 1 1 0 Site-specific recombinase Zn-ribbon_8 PF09723.5 gi|284166577|ref|YP_003404856.1| - 4.2 7.4 6.3 24 4.9 2.7 2.8 2 1 0 2 2 2 0 Zinc ribbon domain DUF4098 PF13345.1 gi|284166578|ref|YP_003404857.1| - 1.9e-11 43.7 21.9 4.1e-08 33.0 4.6 4.0 2 2 1 4 4 4 2 Domain of unknown function (DUF4098) DUF4097 PF13349.1 gi|284166578|ref|YP_003404857.1| - 3e-06 26.8 0.0 0.0015 18.1 0.0 2.7 2 1 0 2 2 2 2 Domain of unknown function (DUF4097) DUF3049 PF11250.3 gi|284166578|ref|YP_003404857.1| - 0.94 9.2 5.7 3.3 7.5 0.0 3.8 5 0 0 5 5 5 0 Protein of unknown function (DUF3049) FecR PF04773.8 gi|284166578|ref|YP_003404857.1| - 3.7 7.8 10.9 4.1 7.7 0.5 3.6 2 1 2 4 4 4 0 FecR protein MMPL PF03176.10 gi|284166580|ref|YP_003404859.1| - 4.6e-36 124.2 29.0 4.3e-21 74.9 11.7 2.6 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.3 gi|284166580|ref|YP_003404859.1| - 7.4e-13 48.2 4.6 5.4e-07 29.2 0.5 2.5 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation Patched PF02460.13 gi|284166580|ref|YP_003404859.1| - 6.3e-12 44.2 4.8 6.3e-12 44.2 3.3 2.2 2 0 0 2 2 2 2 Patched family ACR_tran PF00873.14 gi|284166580|ref|YP_003404859.1| - 0.37 8.1 14.4 0.74 7.1 5.1 2.1 2 0 0 2 2 2 0 AcrB/AcrD/AcrF family Sulfatase PF00884.18 gi|284166582|ref|YP_003404861.1| - 5.4e-05 22.5 0.1 6.9e-05 22.1 0.1 1.1 1 0 0 1 1 1 1 Sulfatase Metalloenzyme PF01676.13 gi|284166582|ref|YP_003404861.1| - 0.06 12.7 0.0 0.093 12.1 0.0 1.2 1 0 0 1 1 1 0 Metalloenzyme superfamily TFX_C PF14601.1 gi|284166584|ref|YP_003404863.1| - 1.5e-30 104.8 0.0 2e-30 104.3 0.0 1.2 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.11 gi|284166584|ref|YP_003404863.1| - 5.5e-08 32.0 0.2 1.1e-07 31.0 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.14 gi|284166584|ref|YP_003404863.1| - 5.2e-06 25.6 0.1 7.4e-06 25.1 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_31 PF13560.1 gi|284166584|ref|YP_003404863.1| - 2.2e-05 24.5 3.1 4.1e-05 23.6 2.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|284166584|ref|YP_003404863.1| - 0.0002 21.1 0.1 0.00039 20.2 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_23 PF13384.1 gi|284166584|ref|YP_003404863.1| - 0.00045 19.7 0.1 0.00084 18.9 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|284166584|ref|YP_003404863.1| - 0.00052 19.4 0.1 0.0012 18.3 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_19 PF12844.2 gi|284166584|ref|YP_003404863.1| - 0.0011 19.0 0.0 0.0024 17.8 0.0 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|284166584|ref|YP_003404863.1| - 0.0024 17.6 0.0 0.0042 16.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain RepB PF07506.6 gi|284166584|ref|YP_003404863.1| - 0.0038 17.1 0.1 0.0059 16.4 0.1 1.3 1 0 0 1 1 1 1 RepB plasmid partitioning protein HTH_7 PF02796.10 gi|284166584|ref|YP_003404863.1| - 0.0043 16.8 0.0 0.0089 15.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase MarR_2 PF12802.2 gi|284166584|ref|YP_003404863.1| - 0.0053 16.3 0.2 0.013 15.1 0.1 1.6 1 0 0 1 1 1 1 MarR family KorB PF08535.5 gi|284166584|ref|YP_003404863.1| - 0.0077 16.3 0.2 0.13 12.3 0.0 2.2 1 1 0 2 2 2 1 KorB domain HTH_38 PF13936.1 gi|284166584|ref|YP_003404863.1| - 0.011 15.2 0.0 0.028 13.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|284166584|ref|YP_003404863.1| - 0.033 13.9 0.1 0.059 13.1 0.1 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Trp_repressor PF01371.14 gi|284166584|ref|YP_003404863.1| - 0.057 13.3 0.2 0.083 12.8 0.1 1.3 1 0 0 1 1 1 0 Trp repressor protein HTH_28 PF13518.1 gi|284166584|ref|YP_003404863.1| - 0.071 13.1 0.1 0.13 12.2 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|284166584|ref|YP_003404863.1| - 0.11 11.8 0.1 0.2 11.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF2481 PF10654.4 gi|284166584|ref|YP_003404863.1| - 0.12 12.0 0.0 0.18 11.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2481) Lactamase_B PF00753.22 gi|284166586|ref|YP_003404865.1| - 6.2e-27 94.5 0.8 9.5e-27 93.9 0.6 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|284166586|ref|YP_003404865.1| - 8.1e-07 28.7 0.1 2.2e-06 27.3 0.0 1.7 1 1 1 2 2 2 1 Beta-lactamase superfamily domain TRAM PF01938.15 gi|284166588|ref|YP_003404867.1| - 5.1e-07 29.3 0.2 6.9e-07 28.9 0.1 1.2 1 0 0 1 1 1 1 TRAM domain CDC45 PF02724.9 gi|284166588|ref|YP_003404867.1| - 0.057 11.4 4.7 0.06 11.3 3.3 1.0 1 0 0 1 1 1 0 CDC45-like protein Antimicrobial21 PF14861.1 gi|284166588|ref|YP_003404867.1| - 0.064 12.7 0.8 0.14 11.6 0.6 1.6 1 0 0 1 1 1 0 Plant antimicrobial peptide Sigma70_ner PF04546.8 gi|284166588|ref|YP_003404867.1| - 0.64 9.5 6.8 0.9 9.1 4.7 1.4 1 0 0 1 1 1 0 Sigma-70, non-essential region DUF2457 PF10446.4 gi|284166588|ref|YP_003404867.1| - 1.7 7.3 11.2 2.1 6.9 7.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) Nop14 PF04147.7 gi|284166588|ref|YP_003404867.1| - 4 5.2 8.2 4.1 5.2 5.7 1.0 1 0 0 1 1 1 0 Nop14-like family ETF PF01012.16 gi|284166589|ref|YP_003404868.1| - 9.1e-35 119.8 2.1 1.5e-34 119.0 1.5 1.4 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF_alpha PF00766.14 gi|284166590|ref|YP_003404869.1| - 3.8e-37 125.7 0.1 8e-37 124.7 0.1 1.6 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.16 gi|284166590|ref|YP_003404869.1| - 2.3e-30 105.4 0.4 3.7e-30 104.7 0.3 1.3 1 0 0 1 1 1 1 Electron transfer flavoprotein domain PBP_like PF12727.2 gi|284166590|ref|YP_003404869.1| - 0.091 11.6 0.1 0.6 9.0 0.0 2.0 2 0 0 2 2 2 0 PBP superfamily domain Peripla_BP_6 PF13458.1 gi|284166591|ref|YP_003404870.1| - 1.7e-30 106.5 4.6 2.1e-30 106.2 3.2 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|284166591|ref|YP_003404870.1| - 7.9e-20 70.9 0.0 1.1e-19 70.4 0.0 1.2 1 0 0 1 1 1 1 Receptor family ligand binding region LppC PF04348.8 gi|284166591|ref|YP_003404870.1| - 0.00023 19.8 0.0 0.00032 19.4 0.0 1.1 1 0 0 1 1 1 1 LppC putative lipoprotein MCPsignal PF00015.16 gi|284166592|ref|YP_003404871.1| - 1.3e-34 119.5 37.3 1.3e-34 119.5 25.9 3.9 2 1 2 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|284166592|ref|YP_003404871.1| - 7.2e-13 48.5 0.9 7.2e-13 48.5 0.6 5.3 6 1 0 6 6 5 2 HAMP domain DUF948 PF06103.6 gi|284166592|ref|YP_003404871.1| - 0.0028 17.4 27.9 0.049 13.5 2.8 6.8 3 2 4 7 7 7 3 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.7 gi|284166592|ref|YP_003404871.1| - 0.0055 16.5 2.3 0.0055 16.5 1.6 5.3 3 2 2 5 5 5 2 Protein of unknown function (DUF1664) AAA_13 PF13166.1 gi|284166592|ref|YP_003404871.1| - 0.043 12.2 38.3 0.25 9.7 11.8 2.7 1 1 1 2 2 2 0 AAA domain Seryl_tRNA_N PF02403.17 gi|284166592|ref|YP_003404871.1| - 0.052 13.5 40.9 0.072 13.1 1.0 5.7 2 2 3 5 5 5 0 Seryl-tRNA synthetase N-terminal domain Hemagglutinin PF00509.13 gi|284166592|ref|YP_003404871.1| - 2.2 6.3 17.0 0.44 8.6 2.6 2.7 2 1 0 2 2 2 0 Haemagglutinin V_ATPase_I PF01496.14 gi|284166592|ref|YP_003404871.1| - 3.2 5.4 26.3 0.91 7.2 4.3 3.1 1 1 1 3 3 3 0 V-type ATPase 116kDa subunit family Syntaxin PF00804.20 gi|284166592|ref|YP_003404871.1| - 3.9 7.6 34.2 0.035 14.2 1.6 5.5 2 1 3 5 5 5 0 Syntaxin BLOC1_2 PF10046.4 gi|284166592|ref|YP_003404871.1| - 7.6 6.7 36.0 0.021 14.9 2.6 5.8 4 1 1 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Laminin_II PF06009.7 gi|284166592|ref|YP_003404871.1| - 9 6.0 49.7 0.67 9.7 4.2 5.8 4 2 3 7 7 7 0 Laminin Domain II polyprenyl_synt PF00348.12 gi|284166593|ref|YP_003404872.1| - 1.3e-52 178.2 0.0 1.8e-52 177.7 0.0 1.2 1 0 0 1 1 1 1 Polyprenyl synthetase DUF373 PF04123.8 gi|284166594|ref|YP_003404873.1| - 2.3e-111 372.1 7.2 2.8e-111 371.8 5.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) PAS_4 PF08448.5 gi|284166595|ref|YP_003404874.1| - 5.7e-30 103.5 3.6 5.6e-15 55.3 0.2 2.9 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.1 gi|284166595|ref|YP_003404874.1| - 3.6e-29 101.2 0.2 5.1e-15 55.7 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS PF00989.19 gi|284166595|ref|YP_003404874.1| - 7.5e-26 90.1 0.1 1.7e-16 59.9 0.0 2.5 2 0 0 2 2 2 2 PAS fold Response_reg PF00072.19 gi|284166595|ref|YP_003404874.1| - 3.4e-21 75.3 0.0 7.8e-21 74.1 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain PAS_8 PF13188.1 gi|284166595|ref|YP_003404874.1| - 2.3e-17 62.1 0.1 1.6e-09 37.2 0.0 2.8 2 0 0 2 2 2 2 PAS domain HisKA PF00512.20 gi|284166595|ref|YP_003404874.1| - 7.5e-14 51.4 2.3 9.4e-13 47.9 0.2 3.0 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.2 gi|284166595|ref|YP_003404874.1| - 1.6e-12 47.4 4.8 1.4e-06 28.2 0.0 3.6 4 1 0 4 4 4 2 PAS fold HATPase_c PF02518.21 gi|284166595|ref|YP_003404874.1| - 1.3e-10 40.9 1.7 2.5e-09 36.8 1.2 2.6 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.1 gi|284166595|ref|YP_003404874.1| - 9.6e-05 22.6 0.0 0.039 14.2 0.0 2.8 2 0 0 2 2 2 1 PAS domain PAS_3 PF08447.6 gi|284166595|ref|YP_003404874.1| - 0.00024 21.1 0.0 0.021 14.9 0.0 2.5 2 0 0 2 2 2 1 PAS fold OKR_DC_1_N PF03709.10 gi|284166595|ref|YP_003404874.1| - 0.024 14.6 0.0 0.064 13.3 0.0 1.7 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain HATPase_c_5 PF14501.1 gi|284166595|ref|YP_003404874.1| - 0.077 12.7 0.0 11 5.7 0.0 3.0 3 0 0 3 3 3 0 GHKL domain Radical_SAM PF04055.16 gi|284166596|ref|YP_003404875.1| - 2.2e-05 24.6 4.3 0.0026 17.9 0.1 2.9 2 1 1 3 3 3 2 Radical SAM superfamily Fer4_14 PF13394.1 gi|284166596|ref|YP_003404875.1| - 0.00015 21.7 0.2 0.00029 20.8 0.1 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|284166596|ref|YP_003404875.1| - 0.00039 20.5 0.0 0.0009 19.3 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain TetR_C PF02909.12 gi|284166596|ref|YP_003404875.1| - 0.035 13.7 0.4 3.7 7.2 0.0 2.7 3 0 0 3 3 3 0 Tetracyclin repressor, C-terminal all-alpha domain SpoIIIAH PF12685.2 gi|284166597|ref|YP_003404876.1| - 0.028 13.9 0.7 0.028 13.9 0.5 2.3 2 0 0 2 2 2 0 SpoIIIAH-like protein LPAM_1 PF08139.7 gi|284166597|ref|YP_003404876.1| - 0.075 13.2 2.3 0.11 12.7 1.6 1.2 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site HTH_24 PF13412.1 gi|284166598|ref|YP_003404877.1| - 0.069 12.5 0.0 0.14 11.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding COP23 PF14218.1 gi|284166599|ref|YP_003404878.1| - 0.0045 16.5 0.1 0.012 15.1 0.0 1.8 2 0 0 2 2 2 1 Circadian oscillating protein COP23 Spectrin PF00435.16 gi|284166599|ref|YP_003404878.1| - 0.019 15.2 1.0 0.057 13.7 0.7 1.9 1 1 1 2 2 2 0 Spectrin repeat BiPBP_C PF06832.7 gi|284166599|ref|YP_003404878.1| - 0.065 13.1 0.0 0.23 11.3 0.0 2.0 1 1 0 1 1 1 0 Penicillin-Binding Protein C-terminus Family Peptidase_S8 PF00082.17 gi|284166600|ref|YP_003404879.1| - 4.5e-50 170.3 9.9 4.5e-50 170.3 6.9 2.0 2 0 0 2 2 2 1 Subtilase family CarboxypepD_reg PF13620.1 gi|284166600|ref|YP_003404879.1| - 6.3e-44 147.9 46.4 8.5e-15 54.5 4.3 6.3 5 0 0 5 5 5 5 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|284166600|ref|YP_003404879.1| - 1.3e-24 86.0 9.7 6.9e-09 35.6 0.4 5.4 2 2 3 5 5 5 5 Domain of unknown function (DUF4480) PEGA PF08308.6 gi|284166600|ref|YP_003404879.1| - 1.4e-10 40.7 7.3 0.058 13.1 0.0 5.9 5 0 0 5 5 5 4 PEGA domain Big_1 PF02369.11 gi|284166600|ref|YP_003404879.1| - 5.4e-10 39.0 26.2 5.9e-08 32.5 2.3 5.4 3 2 2 5 5 5 3 Bacterial Ig-like domain (group 1) DUF2012 PF09430.5 gi|284166600|ref|YP_003404879.1| - 5.5e-06 26.2 0.0 0.04 13.7 0.0 2.6 2 0 0 2 2 2 2 Protein of unknown function (DUF2012) DUF824 PF05688.6 gi|284166600|ref|YP_003404879.1| - 1.4e-05 24.6 8.7 0.035 13.7 0.1 4.2 4 0 0 4 4 4 2 Salmonella repeat of unknown function (DUF824) DUF4249 PF14054.1 gi|284166600|ref|YP_003404879.1| - 3.2e-05 23.4 22.4 3.3e-05 23.4 1.6 4.0 3 1 1 4 4 4 3 Domain of unknown function (DUF4249) YtkA PF13115.1 gi|284166600|ref|YP_003404879.1| - 8.7e-05 22.7 13.3 0.57 10.5 0.0 6.3 6 0 0 6 6 6 1 YtkA-like DUF1533 PF07550.6 gi|284166600|ref|YP_003404879.1| - 0.0023 17.8 0.0 10 6.2 0.0 4.4 4 0 0 4 4 4 1 Protein of unknown function (DUF1533) Glyco_hydro_65m PF03632.10 gi|284166600|ref|YP_003404879.1| - 0.038 12.6 0.0 0.53 8.9 0.0 2.2 2 0 0 2 2 2 0 Glycosyl hydrolase family 65 central catalytic domain Transglut_C PF00927.17 gi|284166601|ref|YP_003404880.1| - 0.074 13.0 1.3 0.25 11.4 0.0 2.5 2 1 0 2 2 2 0 Transglutaminase family, C-terminal ig like domain DUF756 PF05506.7 gi|284166601|ref|YP_003404880.1| - 0.54 10.7 3.1 6.3 7.3 0.1 3.7 3 2 0 3 3 3 0 Domain of unknown function (DUF756) Peptidase_M43 PF05572.8 gi|284166602|ref|YP_003404881.1| - 0.13 11.8 0.0 0.16 11.5 0.0 1.1 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A DUF1628 PF07790.6 gi|284166603|ref|YP_003404882.1| - 3.9e-12 46.7 0.1 7.4e-12 45.8 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) Methyltransf_11 PF08241.7 gi|284166604|ref|YP_003404883.1| - 8.2e-25 87.1 0.0 1.2e-24 86.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|284166604|ref|YP_003404883.1| - 5.4e-19 68.4 0.0 7.3e-19 68.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|284166604|ref|YP_003404883.1| - 5.6e-19 68.2 0.0 7e-19 67.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|284166604|ref|YP_003404883.1| - 4.1e-18 65.3 0.0 1.1e-14 54.1 0.0 2.0 1 1 1 2 2 2 2 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|284166604|ref|YP_003404883.1| - 6.2e-18 65.0 0.0 9.8e-18 64.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|284166604|ref|YP_003404883.1| - 8e-16 58.3 0.0 1.2e-15 57.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|284166604|ref|YP_003404883.1| - 7.6e-14 52.2 0.0 1.1e-13 51.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|284166604|ref|YP_003404883.1| - 5.7e-11 42.4 0.0 3.2e-10 40.0 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|284166604|ref|YP_003404883.1| - 8.9e-08 31.4 0.0 9.8e-08 31.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PCMT PF01135.14 gi|284166604|ref|YP_003404883.1| - 4.1e-07 29.7 0.0 5.6e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|284166604|ref|YP_003404883.1| - 4.9e-06 26.0 0.0 2.1e-05 23.9 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_9 PF08003.6 gi|284166604|ref|YP_003404883.1| - 2.1e-05 23.3 0.0 2.8e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_29 PF03141.11 gi|284166604|ref|YP_003404883.1| - 3e-05 22.5 0.0 3.7e-05 22.2 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase MetW PF07021.7 gi|284166604|ref|YP_003404883.1| - 0.00037 19.9 0.0 0.00053 19.4 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.15 gi|284166604|ref|YP_003404883.1| - 0.0013 17.8 0.0 0.0018 17.3 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase DREV PF05219.7 gi|284166604|ref|YP_003404883.1| - 0.0049 15.7 0.0 0.0069 15.2 0.0 1.4 1 1 0 1 1 1 1 DREV methyltransferase Methyltransf_PK PF05891.7 gi|284166604|ref|YP_003404883.1| - 0.013 14.8 0.0 0.017 14.4 0.0 1.1 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase NodS PF05401.6 gi|284166604|ref|YP_003404883.1| - 0.022 14.1 0.0 0.029 13.7 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltransf_8 PF05148.10 gi|284166604|ref|YP_003404883.1| - 0.024 14.2 0.0 0.24 11.0 0.0 2.0 1 1 0 1 1 1 0 Hypothetical methyltransferase Methyltransf_32 PF13679.1 gi|284166604|ref|YP_003404883.1| - 0.037 13.7 0.0 0.05 13.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain FtsJ PF01728.14 gi|284166604|ref|YP_003404883.1| - 0.12 12.3 0.0 0.19 11.7 0.0 1.5 2 0 0 2 2 2 0 FtsJ-like methyltransferase ATP-synt_B PF00430.13 gi|284166605|ref|YP_003404884.1| - 9.4e-07 28.6 14.5 1.2e-06 28.4 10.0 1.2 1 0 0 1 1 1 1 ATP synthase B/B' CF(0) V-ATPase_G PF03179.10 gi|284166605|ref|YP_003404884.1| - 0.00015 22.0 18.1 0.0088 16.3 12.1 2.1 1 1 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit HrpE PF06188.7 gi|284166605|ref|YP_003404884.1| - 0.0013 18.5 8.5 0.0013 18.5 5.9 1.8 1 1 1 2 2 2 1 HrpE/YscL/FliH and V-type ATPase subunit E DUF3552 PF12072.3 gi|284166605|ref|YP_003404884.1| - 0.0066 15.6 12.9 0.0066 15.6 8.9 2.0 1 1 2 3 3 3 2 Domain of unknown function (DUF3552) DivIVA PF05103.8 gi|284166605|ref|YP_003404884.1| - 0.016 15.2 13.1 0.56 10.2 9.1 2.0 1 1 1 2 2 2 0 DivIVA protein LUC7 PF03194.10 gi|284166605|ref|YP_003404884.1| - 0.21 11.0 12.0 0.23 10.9 8.3 1.0 1 0 0 1 1 1 0 LUC7 N_terminus DUF883 PF05957.8 gi|284166605|ref|YP_003404884.1| - 0.23 11.8 15.0 0.55 10.6 7.4 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) DUF3435 PF11917.3 gi|284166605|ref|YP_003404884.1| - 0.24 10.0 6.0 0.26 9.9 4.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3435) vATP-synt_E PF01991.13 gi|284166605|ref|YP_003404884.1| - 0.24 10.6 22.4 0.032 13.5 9.5 2.3 1 1 1 2 2 2 0 ATP synthase (E/31 kDa) subunit DUF2203 PF09969.4 gi|284166605|ref|YP_003404884.1| - 0.24 11.5 4.7 0.31 11.2 3.3 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) DUF3837 PF12939.2 gi|284166605|ref|YP_003404884.1| - 0.27 11.2 1.8 0.4 10.6 0.5 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF3837) RRN3 PF05327.6 gi|284166605|ref|YP_003404884.1| - 0.66 8.0 6.4 0.8 7.7 4.5 1.0 1 0 0 1 1 1 0 RNA polymerase I specific transcription initiation factor RRN3 GBP_C PF02841.9 gi|284166605|ref|YP_003404884.1| - 1.2 8.3 12.1 1.3 8.1 8.4 1.0 1 0 0 1 1 1 0 Guanylate-binding protein, C-terminal domain YtxH PF12732.2 gi|284166605|ref|YP_003404884.1| - 2.5 8.5 6.1 10 6.5 4.2 2.1 1 1 0 1 1 1 0 YtxH-like protein Sds3 PF08598.6 gi|284166605|ref|YP_003404884.1| - 2.6 7.5 10.3 3.2 7.2 7.2 1.2 1 0 0 1 1 1 0 Sds3-like DUF1682 PF07946.9 gi|284166605|ref|YP_003404884.1| - 2.8 6.6 17.4 3.2 6.5 12.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1682) APG6 PF04111.7 gi|284166605|ref|YP_003404884.1| - 3.3 6.6 11.8 3.6 6.5 8.2 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 Atg14 PF10186.4 gi|284166605|ref|YP_003404884.1| - 4.6 6.0 7.2 5.9 5.7 5.0 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Caudo_TAP PF02413.12 gi|284166605|ref|YP_003404884.1| - 7.9 6.6 10.8 3.2 7.9 1.8 2.3 1 1 1 2 2 2 0 Caudovirales tail fibre assembly protein DUF3043 PF11241.3 gi|284166605|ref|YP_003404884.1| - 8.8 5.8 7.9 12 5.4 5.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3043) V_ATPase_I PF01496.14 gi|284166606|ref|YP_003404885.1| - 9.6e-69 232.0 26.2 2.8e-31 108.1 6.3 5.2 4 1 1 5 5 5 5 V-type ATPase 116kDa subunit family DUF4140 PF13600.1 gi|284166606|ref|YP_003404885.1| - 0.00076 19.8 7.5 0.088 13.2 0.2 2.7 2 0 0 2 2 2 2 N-terminal domain of unknown function (DUF4140) Prefoldin_2 PF01920.15 gi|284166606|ref|YP_003404885.1| - 0.039 13.7 2.6 0.3 10.8 0.7 2.3 2 0 0 2 2 2 0 Prefoldin subunit Snapin_Pallidin PF14712.1 gi|284166606|ref|YP_003404885.1| - 0.54 10.5 2.3 12 6.2 0.5 2.3 2 0 0 2 2 2 0 Snapin/Pallidin ATP-synt_C PF00137.16 gi|284166607|ref|YP_003404886.1| - 2.2e-14 53.0 10.0 3.6e-14 52.4 6.9 1.3 1 0 0 1 1 1 1 ATP synthase subunit C vATP-synt_E PF01991.13 gi|284166608|ref|YP_003404887.1| - 9e-41 139.3 9.8 1.1e-40 139.0 6.8 1.1 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit Apolipoprotein PF01442.13 gi|284166608|ref|YP_003404887.1| - 0.00063 19.3 11.0 0.001 18.6 7.4 1.6 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain HrpE PF06188.7 gi|284166608|ref|YP_003404887.1| - 0.00079 19.2 4.1 0.0011 18.6 2.9 1.2 1 0 0 1 1 1 1 HrpE/YscL/FliH and V-type ATPase subunit E DUF773 PF05600.7 gi|284166608|ref|YP_003404887.1| - 0.008 15.0 0.4 0.0094 14.7 0.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF773) alpha-hel2 PF14456.1 gi|284166608|ref|YP_003404887.1| - 0.061 12.0 10.3 0.076 11.7 7.1 1.1 1 0 0 1 1 1 0 Alpha-helical domain 2 OmpH PF03938.9 gi|284166608|ref|YP_003404887.1| - 0.41 10.5 8.3 0.56 10.1 5.8 1.2 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) Ribosomal_L18_c PF14204.1 gi|284166608|ref|YP_003404887.1| - 0.96 10.0 5.7 1.1 9.9 3.1 1.7 1 1 0 1 1 1 0 Ribosomal L18 C-terminal region Nop25 PF09805.4 gi|284166608|ref|YP_003404887.1| - 2.2 8.3 17.0 0.57 10.2 1.0 2.2 1 1 1 2 2 2 0 Nucleolar protein 12 (25kDa) ATP-synt_B PF00430.13 gi|284166608|ref|YP_003404887.1| - 4 7.2 20.3 16 5.3 13.9 2.0 1 1 0 1 1 1 0 ATP synthase B/B' CF(0) DUF883 PF05957.8 gi|284166608|ref|YP_003404887.1| - 5.3 7.5 18.1 7.2 7.0 1.0 2.9 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) vATP-synt_AC39 PF01992.11 gi|284166609|ref|YP_003404888.1| - 2.8e-88 296.3 2.1 3.1e-88 296.1 1.5 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit DUF3209 PF11483.3 gi|284166609|ref|YP_003404888.1| - 0.002 18.4 0.7 0.0053 17.0 0.1 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF3209) ATP-synt_F PF01990.12 gi|284166610|ref|YP_003404889.1| - 2.3e-18 66.3 0.2 2.8e-18 66.0 0.1 1.1 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit Pantoate_transf PF02548.10 gi|284166610|ref|YP_003404889.1| - 0.047 12.8 0.0 0.05 12.7 0.0 1.1 1 0 0 1 1 1 0 Ketopantoate hydroxymethyltransferase ATP-synt_ab PF00006.20 gi|284166611|ref|YP_003404890.1| - 1.6e-94 315.4 0.0 2.1e-94 314.9 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|284166611|ref|YP_003404890.1| - 2e-16 60.4 0.5 3.7e-16 59.5 0.3 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|284166611|ref|YP_003404890.1| - 1.1e-11 44.6 3.8 1.1e-11 44.6 2.6 2.4 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain AAA_22 PF13401.1 gi|284166611|ref|YP_003404890.1| - 0.072 13.2 0.0 0.17 12.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain Peptidase_M23 PF01551.17 gi|284166611|ref|YP_003404890.1| - 0.09 12.8 0.1 9.1 6.4 0.0 2.6 2 0 0 2 2 2 0 Peptidase family M23 DUF1932 PF09130.6 gi|284166611|ref|YP_003404890.1| - 0.36 10.6 2.3 3.1 7.5 0.3 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF1932) ATP-synt_ab PF00006.20 gi|284166612|ref|YP_003404891.1| - 5.8e-59 199.1 0.0 8.1e-59 198.7 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|284166612|ref|YP_003404891.1| - 6.7e-18 65.2 0.1 1.4e-17 64.1 0.1 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|284166612|ref|YP_003404891.1| - 1.7e-13 50.5 1.3 4.1e-13 49.3 0.9 1.7 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.5 gi|284166612|ref|YP_003404891.1| - 0.0011 18.8 0.6 0.0029 17.4 0.4 1.8 1 0 0 1 1 1 1 HAS barrel domain AMP-binding PF00501.23 gi|284166613|ref|YP_003404892.1| - 3.8e-91 305.5 0.4 4.4e-91 305.3 0.3 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|284166613|ref|YP_003404892.1| - 1.5e-16 61.0 0.1 4.4e-16 59.5 0.0 1.8 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain DUF1510 PF07423.6 gi|284166614|ref|YP_003404893.1| - 0.0024 17.3 0.0 0.0027 17.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1510) DUF2561 PF10812.3 gi|284166614|ref|YP_003404893.1| - 0.11 12.0 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2561) OppC_N PF12911.2 gi|284166614|ref|YP_003404893.1| - 0.26 10.7 1.6 0.33 10.3 1.1 1.2 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C DUF2082 PF09855.4 gi|284166615|ref|YP_003404894.1| - 4e-26 90.6 0.2 4.4e-26 90.5 0.1 1.0 1 0 0 1 1 1 1 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Lar_restr_allev PF14354.1 gi|284166615|ref|YP_003404894.1| - 0.0024 18.1 0.2 0.0035 17.6 0.2 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-ribbon_3 PF13248.1 gi|284166615|ref|YP_003404894.1| - 0.0047 16.1 0.6 0.23 10.7 0.0 2.2 2 0 0 2 2 2 1 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|284166615|ref|YP_003404894.1| - 0.012 15.3 1.8 2.1 8.2 0.1 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|284166615|ref|YP_003404894.1| - 0.026 13.9 0.7 2.9 7.4 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF2387 PF09526.5 gi|284166615|ref|YP_003404894.1| - 0.058 13.3 2.3 0.74 9.7 1.6 2.0 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) TFIIS_C PF01096.13 gi|284166615|ref|YP_003404894.1| - 0.09 12.4 2.5 6.2 6.5 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF1794 PF08768.6 gi|284166615|ref|YP_003404894.1| - 0.13 12.1 0.0 0.13 12.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1794) CpXC PF14353.1 gi|284166615|ref|YP_003404894.1| - 0.13 12.2 0.6 0.22 11.4 0.4 1.4 1 1 0 1 1 1 0 CpXC protein zinc_ribbon_5 PF13719.1 gi|284166615|ref|YP_003404894.1| - 0.29 10.7 3.5 6.1 6.5 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|284166615|ref|YP_003404894.1| - 0.29 10.8 3.5 5.3 6.8 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|284166615|ref|YP_003404894.1| - 1.2 8.5 5.6 12 5.2 3.9 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding zf-HYPF PF07503.7 gi|284166615|ref|YP_003404894.1| - 1.5 8.3 5.4 0.38 10.2 0.3 2.3 2 1 0 2 2 2 0 HypF finger zf-IS66 PF13005.2 gi|284166615|ref|YP_003404894.1| - 1.7 8.6 4.1 0.9 9.5 0.1 2.0 1 1 2 3 3 3 0 zinc-finger binding domain of transposase IS66 ATP-synt_D PF01813.12 gi|284166616|ref|YP_003404895.1| - 4.7e-60 202.5 9.0 5.8e-60 202.2 6.3 1.1 1 0 0 1 1 1 1 ATP synthase subunit D SART-1 PF03343.8 gi|284166616|ref|YP_003404895.1| - 0.0037 15.6 6.7 0.0037 15.6 4.6 1.9 2 0 0 2 2 2 1 SART-1 family ISG65-75 PF11727.3 gi|284166616|ref|YP_003404895.1| - 3 6.8 13.7 1.3 8.0 4.4 2.2 2 0 0 2 2 2 0 Invariant surface glycoprotein PvlArgDC PF01862.11 gi|284166619|ref|YP_003404898.1| - 2.9e-26 92.0 0.0 3.5e-26 91.7 0.0 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) AAA PF00004.24 gi|284166620|ref|YP_003404899.1| - 2.6e-45 153.8 2.2 4.1e-45 153.2 0.1 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|284166620|ref|YP_003404899.1| - 1.1e-08 35.2 0.1 2.8e-08 33.8 0.0 1.8 2 0 0 2 2 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|284166620|ref|YP_003404899.1| - 3.6e-07 29.4 0.0 1.1e-06 27.8 0.0 1.7 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|284166620|ref|YP_003404899.1| - 1.7e-06 28.1 1.5 8.9e-05 22.6 0.2 2.9 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|284166620|ref|YP_003404899.1| - 2e-06 27.9 1.4 9.6e-05 22.4 0.1 3.1 2 1 0 2 2 2 1 AAA ATPase domain AAA_17 PF13207.1 gi|284166620|ref|YP_003404899.1| - 3.7e-06 27.7 1.2 3.6e-05 24.5 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|284166620|ref|YP_003404899.1| - 4e-06 26.5 1.8 1e-05 25.2 0.2 2.5 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|284166620|ref|YP_003404899.1| - 1.1e-05 25.7 1.4 0.01 16.1 0.0 2.5 2 0 0 2 2 2 1 AAA domain DUF815 PF05673.8 gi|284166620|ref|YP_003404899.1| - 7.8e-05 21.7 0.0 0.00016 20.6 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_14 PF13173.1 gi|284166620|ref|YP_003404899.1| - 0.00019 21.3 0.1 0.00046 20.0 0.0 1.7 2 0 0 2 2 1 1 AAA domain TIP49 PF06068.8 gi|284166620|ref|YP_003404899.1| - 0.00045 19.0 0.0 0.00094 18.0 0.0 1.5 1 0 0 1 1 1 1 TIP49 C-terminus AAA_28 PF13521.1 gi|284166620|ref|YP_003404899.1| - 0.00062 19.7 2.0 0.0022 17.9 0.0 2.5 2 1 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|284166620|ref|YP_003404899.1| - 0.00095 18.8 0.1 0.048 13.3 0.0 2.6 2 0 0 2 2 2 1 NACHT domain AAA_19 PF13245.1 gi|284166620|ref|YP_003404899.1| - 0.0011 18.7 0.1 0.0034 17.1 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain IstB_IS21 PF01695.12 gi|284166620|ref|YP_003404899.1| - 0.0014 18.1 0.0 0.0029 17.0 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein Mg_chelatase PF01078.16 gi|284166620|ref|YP_003404899.1| - 0.0014 17.8 0.0 0.0032 16.6 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_25 PF13481.1 gi|284166620|ref|YP_003404899.1| - 0.0015 17.9 10.5 0.021 14.2 0.0 3.5 3 1 1 4 4 3 1 AAA domain Zeta_toxin PF06414.7 gi|284166620|ref|YP_003404899.1| - 0.002 17.2 1.1 0.008 15.2 0.0 2.4 2 1 0 2 2 2 1 Zeta toxin AAA_24 PF13479.1 gi|284166620|ref|YP_003404899.1| - 0.003 17.1 0.0 0.0075 15.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|284166620|ref|YP_003404899.1| - 0.0031 17.3 0.8 0.0073 16.1 0.0 2.0 2 1 0 2 2 1 1 AAA domain Sigma54_activat PF00158.21 gi|284166620|ref|YP_003404899.1| - 0.0037 16.7 0.1 0.074 12.5 0.0 2.4 2 1 0 2 2 2 1 Sigma-54 interaction domain Arch_ATPase PF01637.13 gi|284166620|ref|YP_003404899.1| - 0.0043 16.7 0.4 0.14 11.8 0.0 2.6 2 1 1 3 3 3 1 Archaeal ATPase RNA_helicase PF00910.17 gi|284166620|ref|YP_003404899.1| - 0.013 15.6 0.0 0.026 14.6 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Rootletin PF15035.1 gi|284166620|ref|YP_003404899.1| - 0.016 15.1 5.3 0.04 13.8 3.7 1.6 1 0 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion NB-ARC PF00931.17 gi|284166620|ref|YP_003404899.1| - 0.02 13.7 0.0 0.051 12.4 0.0 1.7 1 1 0 1 1 1 0 NB-ARC domain ADK PF00406.17 gi|284166620|ref|YP_003404899.1| - 0.023 14.5 0.5 5 6.9 0.0 2.4 2 0 0 2 2 2 0 Adenylate kinase KaiC PF06745.8 gi|284166620|ref|YP_003404899.1| - 0.026 13.6 6.6 0.2 10.7 0.0 3.2 2 1 1 3 3 3 0 KaiC AAA_13 PF13166.1 gi|284166620|ref|YP_003404899.1| - 0.028 12.8 3.2 0.14 10.5 1.3 2.0 2 0 0 2 2 2 0 AAA domain Parvo_NS1 PF01057.12 gi|284166620|ref|YP_003404899.1| - 0.03 13.1 0.0 0.059 12.2 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_3 PF07726.6 gi|284166620|ref|YP_003404899.1| - 0.034 13.7 0.0 0.062 12.9 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.1 gi|284166620|ref|YP_003404899.1| - 0.036 14.1 0.0 0.1 12.6 0.0 1.7 1 0 0 1 1 1 0 Sigma-54 interaction domain bZIP_1 PF00170.16 gi|284166620|ref|YP_003404899.1| - 0.046 13.6 3.7 0.21 11.5 0.4 2.4 1 1 1 2 2 2 0 bZIP transcription factor Bac_DnaA PF00308.13 gi|284166620|ref|YP_003404899.1| - 0.047 13.3 0.1 0.62 9.6 0.0 2.2 2 0 0 2 2 2 0 Bacterial dnaA protein AAA_23 PF13476.1 gi|284166620|ref|YP_003404899.1| - 0.054 13.8 3.3 3.8 7.7 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_11 PF13086.1 gi|284166620|ref|YP_003404899.1| - 0.069 12.7 0.1 0.51 9.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|284166620|ref|YP_003404899.1| - 0.072 13.3 1.1 0.19 12.0 0.0 2.3 2 1 0 2 2 2 0 ABC transporter CENP-Q PF13094.1 gi|284166620|ref|YP_003404899.1| - 0.073 13.0 5.3 0.21 11.6 3.0 2.1 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit Atg14 PF10186.4 gi|284166620|ref|YP_003404899.1| - 0.15 10.9 0.3 0.26 10.1 0.2 1.5 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 V_ATPase_I PF01496.14 gi|284166620|ref|YP_003404899.1| - 0.23 9.2 0.6 0.3 8.9 0.4 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family NTPase_1 PF03266.10 gi|284166620|ref|YP_003404899.1| - 0.28 10.8 4.2 0.37 10.4 0.0 2.9 4 1 1 5 5 3 0 NTPase BLOC1_2 PF10046.4 gi|284166620|ref|YP_003404899.1| - 0.33 11.1 4.4 0.19 11.8 1.0 2.2 2 0 0 2 2 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF904 PF06005.7 gi|284166620|ref|YP_003404899.1| - 0.42 10.9 6.7 0.3 11.4 3.3 1.8 2 0 0 2 2 1 0 Protein of unknown function (DUF904) APG6 PF04111.7 gi|284166620|ref|YP_003404899.1| - 0.43 9.5 2.4 0.84 8.6 1.6 1.4 1 0 0 1 1 1 0 Autophagy protein Apg6 IncA PF04156.9 gi|284166620|ref|YP_003404899.1| - 0.51 9.9 4.8 1.1 8.8 3.3 1.5 1 0 0 1 1 1 0 IncA protein DUF2203 PF09969.4 gi|284166620|ref|YP_003404899.1| - 0.73 10.0 2.8 47 4.2 0.5 3.0 3 0 0 3 3 2 0 Uncharacterized conserved protein (DUF2203) DinB_2 PF12867.2 gi|284166620|ref|YP_003404899.1| - 6.1 7.1 7.6 30 4.9 2.2 3.2 3 2 0 3 3 3 0 DinB superfamily AAA_10 PF12846.2 gi|284166620|ref|YP_003404899.1| - 8.8 5.6 7.2 4.5 6.6 0.0 3.1 2 1 1 3 3 3 0 AAA-like domain ABC_tran PF00005.22 gi|284166622|ref|YP_003404901.1| - 1.5e-26 93.3 0.0 1.9e-26 92.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284166622|ref|YP_003404901.1| - 1.4e-15 58.0 0.0 1.1e-10 41.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_13 PF13166.1 gi|284166622|ref|YP_003404901.1| - 0.0018 16.8 0.0 0.065 11.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|284166622|ref|YP_003404901.1| - 0.0053 16.7 0.1 0.011 15.7 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.1 gi|284166622|ref|YP_003404901.1| - 0.011 15.3 0.0 0.024 14.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|284166622|ref|YP_003404901.1| - 0.03 14.6 0.0 0.049 13.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|284166622|ref|YP_003404901.1| - 0.041 13.4 0.1 0.078 12.5 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|284166622|ref|YP_003404901.1| - 0.066 13.3 0.1 0.23 11.5 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|284166622|ref|YP_003404901.1| - 0.096 13.5 0.1 0.2 12.4 0.1 1.6 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|284166622|ref|YP_003404901.1| - 0.1 12.0 0.1 0.2 11.1 0.1 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA PF00004.24 gi|284166622|ref|YP_003404901.1| - 0.15 12.2 0.2 0.94 9.6 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.1 gi|284166622|ref|YP_003404901.1| - 0.15 11.0 0.0 0.47 9.4 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain AAA_25 PF13481.1 gi|284166622|ref|YP_003404901.1| - 0.27 10.6 2.7 0.27 10.6 0.7 2.0 2 1 0 2 2 2 0 AAA domain Peptidase_M3 PF01432.15 gi|284166623|ref|YP_003404902.1| - 1.2e-65 222.3 0.7 1.2e-65 222.3 0.5 2.2 2 0 0 2 2 2 1 Peptidase family M3 Peptidase_M3_N PF08439.5 gi|284166623|ref|YP_003404902.1| - 3.9e-21 74.8 4.4 2.2e-20 72.4 0.2 3.1 3 0 0 3 3 3 1 Oligopeptidase F Reprolysin_3 PF13582.1 gi|284166623|ref|YP_003404902.1| - 0.13 12.8 0.8 0.63 10.5 0.0 2.4 2 0 0 2 2 2 0 Metallo-peptidase family M12B Reprolysin-like FUSC PF04632.7 gi|284166623|ref|YP_003404902.1| - 1.3 7.3 3.7 2.6 6.3 2.6 1.6 1 0 0 1 1 1 0 Fusaric acid resistance protein family Oxidored_FMN PF00724.15 gi|284166624|ref|YP_003404903.1| - 1.3e-77 261.0 0.0 1.6e-77 260.8 0.0 1.0 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family Dus PF01207.12 gi|284166624|ref|YP_003404903.1| - 3.1e-05 22.9 0.0 5.3e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) PEP_mutase PF13714.1 gi|284166624|ref|YP_003404903.1| - 0.067 12.4 0.6 5.8 6.0 0.2 2.2 2 0 0 2 2 2 0 Phosphoenolpyruvate phosphomutase Peptidase_M28 PF04389.12 gi|284166625|ref|YP_003404904.1| - 4.6e-26 91.6 0.0 6.6e-26 91.1 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M28 PA PF02225.17 gi|284166625|ref|YP_003404904.1| - 3.1e-07 30.0 0.1 5.4e-07 29.2 0.1 1.4 1 0 0 1 1 1 1 PA domain Peptidase_M20 PF01546.23 gi|284166625|ref|YP_003404904.1| - 0.00083 18.9 0.2 0.0018 17.8 0.1 1.5 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M42 PF05343.9 gi|284166625|ref|YP_003404904.1| - 0.019 13.7 0.2 0.035 12.8 0.1 1.4 1 0 0 1 1 1 0 M42 glutamyl aminopeptidase NifU PF01106.12 gi|284166626|ref|YP_003404905.1| - 1.8e-12 46.8 0.0 2.3e-12 46.4 0.0 1.2 1 0 0 1 1 1 1 NifU-like domain ProSAAS PF07259.7 gi|284166627|ref|YP_003404906.1| - 0.026 14.0 0.6 0.032 13.7 0.4 1.2 1 0 0 1 1 1 0 ProSAAS precursor MerE PF05052.7 gi|284166627|ref|YP_003404906.1| - 0.037 14.0 1.8 0.047 13.6 1.2 1.2 1 0 0 1 1 1 0 MerE protein DUF475 PF04332.10 gi|284166627|ref|YP_003404906.1| - 0.081 12.4 0.9 0.1 12.1 0.6 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF475) Maff2 PF12750.2 gi|284166627|ref|YP_003404906.1| - 0.086 12.3 0.9 0.48 9.9 0.0 2.1 2 0 0 2 2 2 0 Maff2 family PseudoU_synth_1 PF01416.15 gi|284166628|ref|YP_003404907.1| - 8.5e-22 77.5 0.0 1.7e-10 41.2 0.0 2.3 2 0 0 2 2 2 2 tRNA pseudouridine synthase TrkA_N PF02254.13 gi|284166629|ref|YP_003404908.1| - 1.2e-29 102.6 1.3 2e-29 101.9 0.9 1.4 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_7 PF13241.1 gi|284166629|ref|YP_003404908.1| - 1.1e-06 28.8 0.2 1.8e-06 28.1 0.1 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding DAO PF01266.19 gi|284166629|ref|YP_003404908.1| - 8.8e-05 21.5 0.1 0.0001 21.3 0.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase AdoHcyase_NAD PF00670.16 gi|284166629|ref|YP_003404908.1| - 0.00031 20.6 0.3 0.00067 19.5 0.2 1.6 1 1 1 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain F420_oxidored PF03807.12 gi|284166629|ref|YP_003404908.1| - 0.0025 18.2 0.1 0.0072 16.7 0.0 1.8 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|284166629|ref|YP_003404908.1| - 0.0027 17.5 0.3 0.0053 16.6 0.1 1.5 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.11 gi|284166629|ref|YP_003404908.1| - 0.0032 16.9 0.0 0.0051 16.2 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.13 gi|284166629|ref|YP_003404908.1| - 0.0032 17.1 0.3 0.0053 16.4 0.2 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|284166629|ref|YP_003404908.1| - 0.026 14.5 0.7 0.039 13.9 0.5 1.3 1 0 0 1 1 1 0 NADH(P)-binding NAD_binding_8 PF13450.1 gi|284166629|ref|YP_003404908.1| - 0.026 14.5 0.0 0.068 13.2 0.0 1.7 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain NAD_Gly3P_dh_N PF01210.18 gi|284166629|ref|YP_003404908.1| - 0.03 14.0 0.1 0.11 12.2 0.0 2.0 2 1 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus IlvN PF07991.7 gi|284166629|ref|YP_003404908.1| - 0.033 13.5 0.2 0.086 12.2 0.1 1.6 1 1 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain UDPG_MGDP_dh_N PF03721.9 gi|284166629|ref|YP_003404908.1| - 0.066 12.5 1.1 0.18 11.1 0.1 1.9 1 1 1 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IU_nuc_hydro PF01156.14 gi|284166630|ref|YP_003404909.1| - 9.6e-81 271.3 0.4 1.1e-80 271.1 0.3 1.0 1 0 0 1 1 1 1 Inosine-uridine preferring nucleoside hydrolase Sulfatase PF00884.18 gi|284166632|ref|YP_003404911.1| - 6.4e-43 147.0 0.0 8.6e-43 146.6 0.0 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|284166632|ref|YP_003404911.1| - 6.3e-08 32.3 0.2 0.012 14.9 0.0 2.3 1 1 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase_C PF14707.1 gi|284166632|ref|YP_003404911.1| - 0.0083 16.4 0.0 0.016 15.5 0.0 1.4 1 0 0 1 1 1 1 C-terminal region of aryl-sulfatase DUF1501 PF07394.7 gi|284166632|ref|YP_003404911.1| - 0.059 12.1 0.1 0.09 11.5 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1501) Sulfatase PF00884.18 gi|284166633|ref|YP_003404912.1| - 6.5e-47 160.2 0.1 8.1e-47 159.8 0.0 1.1 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|284166633|ref|YP_003404912.1| - 9.2e-19 67.9 1.7 1.1e-17 64.3 1.1 2.4 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF1501 PF07394.7 gi|284166633|ref|YP_003404912.1| - 0.014 14.2 0.0 0.098 11.4 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1501) Phosphoesterase PF04185.9 gi|284166633|ref|YP_003404912.1| - 0.23 10.6 1.4 0.41 9.8 0.2 1.7 2 0 0 2 2 2 0 Phosphoesterase family HSP20 PF00011.16 gi|284166634|ref|YP_003404913.1| - 0.05 13.4 0.0 3.8 7.4 0.0 2.0 2 0 0 2 2 2 0 Hsp20/alpha crystallin family PSII_BNR PF14870.1 gi|284166635|ref|YP_003404914.1| - 3.8e-05 22.8 0.4 0.019 13.9 0.1 2.2 2 0 0 2 2 2 2 Photosynthesis system II assembly factor YCF48 Hydrolase PF00702.21 gi|284166636|ref|YP_003404915.1| - 6.8e-39 134.5 7.8 2.8e-38 132.5 5.4 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase E1-E2_ATPase PF00122.15 gi|284166636|ref|YP_003404915.1| - 2.5e-31 108.5 5.1 3e-31 108.2 2.8 1.7 1 1 1 2 2 2 1 E1-E2 ATPase HAD PF12710.2 gi|284166636|ref|YP_003404915.1| - 5e-14 52.8 0.0 2e-13 50.9 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|284166636|ref|YP_003404915.1| - 3.1e-08 33.6 0.0 7.9e-08 32.3 0.0 1.7 1 0 0 1 1 1 1 Heavy-metal-associated domain HAD_2 PF13419.1 gi|284166636|ref|YP_003404915.1| - 0.0086 16.3 0.0 0.047 13.9 0.0 2.4 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase DUF1380 PF07128.7 gi|284166636|ref|YP_003404915.1| - 0.018 14.8 0.2 0.045 13.5 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1380) Hydrolase_3 PF08282.7 gi|284166636|ref|YP_003404915.1| - 0.028 14.0 0.0 0.11 12.1 0.2 1.8 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase zf-FCS PF06467.9 gi|284166636|ref|YP_003404915.1| - 0.047 13.3 0.0 0.087 12.4 0.0 1.4 1 0 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif Mrr_cat PF04471.7 gi|284166637|ref|YP_003404916.1| - 4.5e-27 94.1 0.0 1.4e-26 92.5 0.0 1.8 2 0 0 2 2 2 1 Restriction endonuclease Siva PF05458.7 gi|284166637|ref|YP_003404916.1| - 0.008 15.7 4.2 0.014 14.9 2.9 1.4 1 0 0 1 1 1 1 Cd27 binding protein (Siva) zf-CpG_bind_C PF12269.3 gi|284166637|ref|YP_003404916.1| - 0.023 14.1 1.0 0.049 13.1 0.7 1.5 1 0 0 1 1 1 0 CpG binding protein zinc finger C terminal domain stn_TNFRSF12A PF12191.3 gi|284166637|ref|YP_003404916.1| - 0.055 13.5 0.7 0.12 12.4 0.5 1.6 1 0 0 1 1 1 0 Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain Metal_resist PF13801.1 gi|284166638|ref|YP_003404917.1| - 0.16 11.9 0.4 0.16 11.9 0.3 2.3 2 0 0 2 2 2 0 Heavy-metal resistance Bac_luciferase PF00296.15 gi|284166639|ref|YP_003404918.1| - 5.2e-49 167.0 6.7 6.4e-49 166.7 4.6 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase Aconitase PF00330.15 gi|284166640|ref|YP_003404919.1| - 3.7e-102 342.2 1.2 4.3e-75 252.9 0.0 2.2 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) Aconitase_C PF00694.14 gi|284166640|ref|YP_003404919.1| - 1.1e-21 77.2 0.0 2.1e-21 76.3 0.0 1.5 1 0 0 1 1 1 1 Aconitase C-terminal domain DUF521 PF04412.8 gi|284166640|ref|YP_003404919.1| - 0.04 12.4 0.0 0.062 11.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF521) dUTPase PF00692.14 gi|284166641|ref|YP_003404920.1| - 3.3e-13 49.2 0.0 5e-13 48.6 0.0 1.2 1 0 0 1 1 1 1 dUTPase DUF457 PF04307.9 gi|284166642|ref|YP_003404921.1| - 0.00011 21.5 19.4 0.00034 19.9 13.3 1.9 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF3742 PF12553.3 gi|284166642|ref|YP_003404921.1| - 0.26 11.7 0.4 0.26 11.7 0.3 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3742) CopD PF05425.8 gi|284166643|ref|YP_003404922.1| - 0.012 15.7 10.8 0.012 15.7 7.5 2.0 2 1 0 2 2 2 0 Copper resistance protein D DUF4149 PF13664.1 gi|284166643|ref|YP_003404922.1| - 0.96 9.5 6.9 2.2 8.4 4.8 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4149) NAD_binding_2 PF03446.10 gi|284166645|ref|YP_003404924.1| - 6.1e-37 126.9 0.0 8.5e-37 126.5 0.0 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 6PGD PF00393.14 gi|284166645|ref|YP_003404924.1| - 7.2e-23 81.2 0.0 1e-22 80.7 0.0 1.3 1 0 0 1 1 1 1 6-phosphogluconate dehydrogenase, C-terminal domain F420_oxidored PF03807.12 gi|284166645|ref|YP_003404924.1| - 3.5e-06 27.3 0.1 5.2e-06 26.8 0.1 1.3 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.13 gi|284166645|ref|YP_003404924.1| - 0.00016 21.3 0.2 0.00023 20.8 0.1 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_11 PF14833.1 gi|284166645|ref|YP_003404924.1| - 0.00038 20.4 0.0 0.011 15.8 0.0 2.8 2 1 1 3 3 3 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase TrkA_N PF02254.13 gi|284166645|ref|YP_003404924.1| - 0.00039 20.4 0.0 0.00084 19.3 0.0 1.6 1 0 0 1 1 1 1 TrkA-N domain 2-Hacid_dh_C PF02826.14 gi|284166645|ref|YP_003404924.1| - 0.0026 16.9 0.0 0.0036 16.4 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|284166645|ref|YP_003404924.1| - 0.085 12.2 0.1 0.18 11.1 0.0 1.5 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DapB_N PF01113.15 gi|284166645|ref|YP_003404924.1| - 0.17 11.8 1.1 0.48 10.3 0.8 1.8 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus HNH_2 PF13391.1 gi|284166647|ref|YP_003404926.1| - 1.4e-11 43.9 0.1 2.8e-11 43.0 0.0 1.6 1 0 0 1 1 1 1 HNH endonuclease HNH PF01844.18 gi|284166647|ref|YP_003404926.1| - 0.0048 16.7 0.2 0.0086 15.9 0.1 1.4 1 0 0 1 1 1 1 HNH endonuclease AAA_assoc_C PF09821.4 gi|284166647|ref|YP_003404926.1| - 0.016 15.4 0.1 0.72 10.1 0.0 2.4 2 0 0 2 2 2 0 C-terminal AAA-associated domain Methyltransf_2 PF00891.13 gi|284166649|ref|YP_003404928.1| - 0.0088 15.2 0.0 0.014 14.6 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase DUF2892 PF11127.3 gi|284166650|ref|YP_003404929.1| - 0.026 14.3 6.7 0.038 13.8 4.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) DUF998 PF06197.8 gi|284166650|ref|YP_003404929.1| - 0.1 11.9 7.8 0.12 11.7 5.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF998) DUF3096 PF11295.3 gi|284166650|ref|YP_003404929.1| - 0.36 10.3 12.4 1.2 8.6 3.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3096) DUF308 PF03729.8 gi|284166650|ref|YP_003404929.1| - 0.49 10.4 8.2 0.68 9.9 5.7 1.2 1 0 0 1 1 1 0 Short repeat of unknown function (DUF308) SdpI PF13630.1 gi|284166650|ref|YP_003404929.1| - 1.1 9.0 3.7 1.3 8.8 2.6 1.1 1 0 0 1 1 1 0 SdpI/YhfL protein family UPF0233 PF06781.7 gi|284166650|ref|YP_003404929.1| - 7.8 6.2 10.0 3 7.5 0.8 2.1 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0233) DUF393 PF04134.7 gi|284166651|ref|YP_003404930.1| - 6.2e-10 40.1 0.2 7.4e-10 39.9 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF393 LMF1 PF06762.9 gi|284166652|ref|YP_003404931.1| - 2.4e-121 405.1 0.0 3.9e-121 404.4 0.0 1.3 1 0 0 1 1 1 1 Lipase maturation factor ADH_N PF08240.7 gi|284166653|ref|YP_003404932.1| - 6.7e-28 96.6 0.0 1.2e-27 95.8 0.0 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|284166653|ref|YP_003404932.1| - 9.6e-20 70.4 0.1 8.4e-17 60.9 0.0 2.3 2 0 0 2 2 2 2 Zinc-binding dehydrogenase ADH_N_assoc PF13823.1 gi|284166653|ref|YP_003404932.1| - 1.8e-10 40.2 0.1 3.7e-10 39.2 0.0 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-associated Methyltransf_11 PF08241.7 gi|284166653|ref|YP_003404932.1| - 0.00034 21.0 0.1 0.0015 19.0 0.1 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|284166653|ref|YP_003404932.1| - 0.00088 19.8 0.0 0.0021 18.6 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain AlaDh_PNT_C PF01262.16 gi|284166653|ref|YP_003404932.1| - 0.0084 15.6 0.0 0.014 14.9 0.0 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.14 gi|284166653|ref|YP_003404932.1| - 0.022 13.9 0.0 0.036 13.2 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Methyltransf_25 PF13649.1 gi|284166653|ref|YP_003404932.1| - 0.026 14.8 0.0 0.083 13.2 0.0 1.7 1 1 1 2 2 2 0 Methyltransferase domain TrkA_N PF02254.13 gi|284166653|ref|YP_003404932.1| - 0.027 14.4 0.1 0.063 13.2 0.0 1.6 2 0 0 2 2 2 0 TrkA-N domain ELFV_dehydrog PF00208.16 gi|284166653|ref|YP_003404932.1| - 0.13 11.8 0.0 0.2 11.1 0.0 1.2 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Polyketide_cyc2 PF10604.4 gi|284166654|ref|YP_003404933.1| - 6.8e-09 36.0 0.7 1.2e-08 35.2 0.5 1.4 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|284166654|ref|YP_003404933.1| - 8e-05 22.6 0.0 0.00012 22.0 0.0 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport HpcH_HpaI PF03328.9 gi|284166655|ref|YP_003404934.1| - 1e-29 103.0 0.0 1.4e-29 102.6 0.0 1.1 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family Cupin_2 PF07883.6 gi|284166656|ref|YP_003404935.1| - 1.7e-10 40.2 0.6 2.6e-10 39.6 0.4 1.3 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.17 gi|284166656|ref|YP_003404935.1| - 0.00027 20.3 0.0 0.00036 19.9 0.0 1.2 1 0 0 1 1 1 1 Cupin GPI PF06560.6 gi|284166656|ref|YP_003404935.1| - 0.0069 15.4 0.0 0.0087 15.0 0.0 1.1 1 0 0 1 1 1 1 Glucose-6-phosphate isomerase (GPI) Zn_Tnp_IS1595 PF12760.2 gi|284166656|ref|YP_003404935.1| - 0.013 15.3 0.3 0.021 14.6 0.2 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Cupin_3 PF05899.7 gi|284166656|ref|YP_003404935.1| - 0.03 13.6 0.6 0.051 12.9 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF861) KduI PF04962.7 gi|284166656|ref|YP_003404935.1| - 0.13 11.3 0.0 0.16 11.0 0.0 1.2 1 0 0 1 1 1 0 KduI/IolB family zf-C4_Topoisom PF01396.14 gi|284166656|ref|YP_003404935.1| - 0.36 10.3 2.4 7.6 6.1 0.1 2.2 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Zn_Tnp_IS1 PF03811.8 gi|284166656|ref|YP_003404935.1| - 0.42 10.1 2.3 14 5.2 0.0 2.4 2 0 0 2 2 2 0 InsA N-terminal domain zf-RING_3 PF14369.1 gi|284166656|ref|YP_003404935.1| - 1.2 9.1 6.9 13 5.9 0.9 2.5 1 1 1 2 2 2 0 zinc-finger MFS_1 PF07690.11 gi|284166657|ref|YP_003404936.1| - 1.8e-29 102.5 42.7 1.8e-29 102.5 29.6 1.6 1 1 0 1 1 1 1 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|284166657|ref|YP_003404936.1| - 0.011 15.4 0.6 2.7 7.8 0.1 3.2 3 0 0 3 3 3 0 MFS_1 like family ATG22 PF11700.3 gi|284166657|ref|YP_003404936.1| - 0.043 12.2 11.4 0.0068 14.9 4.9 1.9 2 0 0 2 2 2 0 Vacuole effluxer Atg22 like LacY_symp PF01306.14 gi|284166657|ref|YP_003404936.1| - 0.054 12.0 5.4 0.014 13.9 1.8 1.6 2 0 0 2 2 2 0 LacY proton/sugar symporter DUF3154 PF11351.3 gi|284166657|ref|YP_003404936.1| - 0.063 13.0 0.5 0.063 13.0 0.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3154) DUF1228 PF06779.9 gi|284166657|ref|YP_003404936.1| - 1.9 8.5 13.7 1.2 9.2 0.3 3.9 4 0 0 4 4 4 0 Protein of unknown function (DUF1228) Pyridox_oxidase PF01243.15 gi|284166658|ref|YP_003404937.1| - 2.4e-15 56.2 0.1 1.3e-14 53.9 0.1 1.9 1 1 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.2 gi|284166658|ref|YP_003404937.1| - 5.5e-06 26.2 5.1 9.8e-06 25.4 3.6 1.4 1 1 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Beta-Casp PF10996.3 gi|284166659|ref|YP_003404938.1| - 7.2e-21 74.4 0.0 1.3e-20 73.6 0.0 1.3 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|284166659|ref|YP_003404938.1| - 1.8e-15 57.1 2.8 2.7e-15 56.5 1.9 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|284166659|ref|YP_003404938.1| - 2.5e-12 46.3 0.0 5.9e-12 45.2 0.0 1.7 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|284166659|ref|YP_003404938.1| - 9.7e-09 35.0 0.2 1.7e-08 34.2 0.2 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain SHOCT PF09851.4 gi|284166660|ref|YP_003404939.1| - 4.9e-06 25.8 0.4 9e-06 24.9 0.3 1.5 1 0 0 1 1 1 1 Short C-terminal domain Tetraspannin PF00335.15 gi|284166660|ref|YP_003404939.1| - 0.076 12.2 0.2 0.085 12.1 0.1 1.1 1 0 0 1 1 1 0 Tetraspanin family DUF3487 PF11990.3 gi|284166660|ref|YP_003404939.1| - 7 6.0 11.8 10 5.5 8.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3487) TM2 PF05154.11 gi|284166661|ref|YP_003404940.1| - 0.047 13.9 1.4 0.11 12.7 0.9 1.6 1 0 0 1 1 1 0 TM2 domain ALIX_LYPXL_bnd PF13949.1 gi|284166662|ref|YP_003404941.1| - 0.18 10.7 0.0 0.25 10.2 0.0 1.1 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV Ribosomal_S6e PF01092.14 gi|284166664|ref|YP_003404943.1| - 1.2e-39 134.8 0.5 1.4e-39 134.6 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e PadR PF03551.9 gi|284166666|ref|YP_003404945.1| - 6.1e-09 35.5 0.1 1.2e-08 34.6 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Arch_fla_DE PF04659.8 gi|284166667|ref|YP_003404946.1| - 3e-14 52.6 0.0 1.2e-13 50.6 0.0 1.8 1 1 0 1 1 1 1 Archaeal flagella protein Allexi_40kDa PF05549.6 gi|284166667|ref|YP_003404946.1| - 0.085 12.1 0.0 0.11 11.7 0.0 1.1 1 0 0 1 1 1 0 Allexivirus 40kDa protein T2SF PF00482.18 gi|284166668|ref|YP_003404947.1| - 1e-12 48.0 1.4 1e-10 41.5 0.4 4.1 4 1 1 5 5 5 2 Type II secretion system (T2SS), protein F DUF4229 PF14012.1 gi|284166668|ref|YP_003404947.1| - 0.02 14.7 6.9 0.02 14.7 4.8 4.3 5 0 0 5 5 5 0 Protein of unknown function (DUF4229) CCDC-167 PF15188.1 gi|284166668|ref|YP_003404947.1| - 0.022 14.7 0.4 0.064 13.2 0.1 1.9 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 167 HalX PF08663.5 gi|284166668|ref|YP_003404947.1| - 0.091 12.7 0.8 0.62 10.0 0.3 2.2 2 0 0 2 2 2 0 HalX domain T2SE PF00437.15 gi|284166669|ref|YP_003404948.1| - 1.1e-45 155.7 0.0 1.5e-45 155.2 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|284166669|ref|YP_003404948.1| - 0.00015 21.1 0.1 0.0015 18.0 0.0 2.3 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|284166669|ref|YP_003404948.1| - 0.0039 17.3 0.0 0.017 15.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|284166669|ref|YP_003404948.1| - 0.0044 17.0 0.0 0.024 14.6 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain ABC_tran PF00005.22 gi|284166669|ref|YP_003404948.1| - 0.0045 17.2 0.0 0.013 15.8 0.0 1.7 1 0 0 1 1 1 1 ABC transporter Glyco_transf_20 PF00982.16 gi|284166669|ref|YP_003404948.1| - 0.024 13.1 0.0 0.036 12.5 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase family 20 FtsK_SpoIIIE PF01580.13 gi|284166669|ref|YP_003404948.1| - 0.036 13.5 0.0 0.2 11.0 0.0 2.0 2 0 0 2 2 2 0 FtsK/SpoIIIE family Glyco_trans_4_4 PF13579.1 gi|284166669|ref|YP_003404948.1| - 0.039 14.0 0.0 0.36 10.9 0.0 2.2 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain Dynamin_N PF00350.18 gi|284166669|ref|YP_003404948.1| - 0.069 12.9 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Dynamin family AAA_23 PF13476.1 gi|284166669|ref|YP_003404948.1| - 0.069 13.4 0.1 0.18 12.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|284166669|ref|YP_003404948.1| - 0.15 12.0 0.0 0.38 10.7 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase MobB PF03205.9 gi|284166669|ref|YP_003404948.1| - 0.16 11.6 0.0 0.3 10.7 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AIG1 PF04548.11 gi|284166669|ref|YP_003404948.1| - 0.19 10.8 0.0 0.41 9.7 0.0 1.6 1 0 0 1 1 1 0 AIG1 family KaiC PF06745.8 gi|284166670|ref|YP_003404949.1| - 3e-18 65.7 0.0 4.8e-18 65.1 0.0 1.3 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|284166670|ref|YP_003404949.1| - 4.6e-10 39.2 0.1 7e-10 38.6 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|284166670|ref|YP_003404949.1| - 6e-05 23.1 0.1 9.6e-05 22.4 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain NACHT PF05729.7 gi|284166670|ref|YP_003404949.1| - 0.00014 21.5 0.0 0.00018 21.1 0.0 1.2 1 0 0 1 1 1 1 NACHT domain UPF0079 PF02367.12 gi|284166670|ref|YP_003404949.1| - 0.015 14.9 0.0 0.03 13.9 0.0 1.5 1 1 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 KAP_NTPase PF07693.9 gi|284166670|ref|YP_003404949.1| - 0.025 13.5 0.0 0.032 13.2 0.0 1.1 1 0 0 1 1 1 0 KAP family P-loop domain ABC_tran PF00005.22 gi|284166670|ref|YP_003404949.1| - 0.042 14.1 0.0 0.085 13.1 0.0 1.6 1 1 1 2 2 2 0 ABC transporter RecA PF00154.16 gi|284166670|ref|YP_003404949.1| - 0.049 12.6 0.1 0.11 11.5 0.0 1.5 2 0 0 2 2 2 0 recA bacterial DNA recombination protein AAA_5 PF07728.9 gi|284166670|ref|YP_003404949.1| - 0.063 13.0 0.1 0.22 11.2 0.0 2.1 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|284166670|ref|YP_003404949.1| - 0.069 13.2 0.1 0.23 11.6 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|284166670|ref|YP_003404949.1| - 0.11 12.8 0.0 0.26 11.6 0.0 1.6 1 1 0 1 1 1 0 AAA domain Arch_flagellin PF01917.11 gi|284166671|ref|YP_003404950.1| - 2.4e-14 53.3 2.4 5e-14 52.3 1.6 1.5 1 1 0 1 1 1 1 Archaebacterial flagellin CARDB PF07705.6 gi|284166671|ref|YP_003404950.1| - 0.00035 20.5 0.1 0.00051 20.0 0.1 1.3 1 0 0 1 1 1 1 CARDB DUF11 PF01345.13 gi|284166671|ref|YP_003404950.1| - 0.011 15.7 0.7 0.018 15.0 0.5 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF11 Arch_flagellin PF01917.11 gi|284166672|ref|YP_003404951.1| - 7.2e-06 25.7 1.4 0.00014 21.5 1.0 2.1 1 1 0 1 1 1 1 Archaebacterial flagellin Sensor PF13796.1 gi|284166672|ref|YP_003404951.1| - 0.038 13.6 0.0 0.06 12.9 0.0 1.3 1 0 0 1 1 1 0 Putative sensor Big_2 PF02368.13 gi|284166672|ref|YP_003404951.1| - 0.085 12.7 1.2 0.46 10.4 0.6 2.2 2 1 0 2 2 2 0 Bacterial Ig-like domain (group 2) DUF11 PF01345.13 gi|284166672|ref|YP_003404951.1| - 0.59 10.2 7.2 2.5 8.1 0.5 2.3 2 0 0 2 2 2 0 Domain of unknown function DUF11 Arch_fla_DE PF04659.8 gi|284166673|ref|YP_003404952.1| - 3.1e-19 68.6 0.0 6.5e-19 67.5 0.0 1.5 1 0 0 1 1 1 1 Archaeal flagella protein FlaC_arch PF05377.6 gi|284166673|ref|YP_003404952.1| - 1.4e-08 34.5 0.9 2.8e-08 33.5 0.6 1.5 1 0 0 1 1 1 1 Flagella accessory protein C (FlaC) Tmemb_cc2 PF10267.4 gi|284166673|ref|YP_003404952.1| - 0.017 13.7 2.8 0.035 12.6 2.0 1.5 1 0 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein DUF848 PF05852.6 gi|284166673|ref|YP_003404952.1| - 0.017 14.9 0.7 0.04 13.7 0.5 1.6 1 0 0 1 1 1 0 Gammaherpesvirus protein of unknown function (DUF848) IncA PF04156.9 gi|284166673|ref|YP_003404952.1| - 0.027 14.0 0.2 0.047 13.2 0.1 1.4 1 0 0 1 1 1 0 IncA protein Tropomyosin_1 PF12718.2 gi|284166673|ref|YP_003404952.1| - 0.039 13.8 4.6 0.057 13.2 1.0 2.3 2 0 0 2 2 2 0 Tropomyosin like EMP24_GP25L PF01105.19 gi|284166673|ref|YP_003404952.1| - 0.056 13.1 0.0 0.15 11.7 0.0 1.6 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD Sugarporin_N PF11471.3 gi|284166673|ref|YP_003404952.1| - 0.18 11.4 1.5 0.38 10.4 1.1 1.6 1 0 0 1 1 1 0 Maltoporin periplasmic N-terminal extension Spectrin PF00435.16 gi|284166673|ref|YP_003404952.1| - 0.38 11.0 4.3 0.27 11.5 0.6 2.2 2 0 0 2 2 2 0 Spectrin repeat DivIC PF04977.10 gi|284166673|ref|YP_003404952.1| - 1.9 8.0 4.5 1.4 8.4 1.6 1.8 2 0 0 2 2 2 0 Septum formation initiator Med21 PF11221.3 gi|284166673|ref|YP_003404952.1| - 2.5 8.0 5.5 1.6 8.7 1.5 2.2 2 0 0 2 2 2 0 Subunit 21 of Mediator complex Arch_flagellin PF01917.11 gi|284166675|ref|YP_003404954.1| - 1.2e-36 126.0 17.8 2.3e-36 125.1 12.3 1.4 1 1 0 1 1 1 1 Archaebacterial flagellin Cadherin-like PF12733.2 gi|284166675|ref|YP_003404954.1| - 1 9.6 8.2 5.4 7.3 1.5 2.3 1 1 1 2 2 2 0 Cadherin-like beta sandwich domain Arch_flagellin PF01917.11 gi|284166676|ref|YP_003404955.1| - 2e-37 128.6 15.3 2.4e-37 128.3 10.6 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin DUF4442 PF14539.1 gi|284166676|ref|YP_003404955.1| - 0.21 11.5 2.3 0.78 9.7 1.6 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4442) TAT_signal PF10518.4 gi|284166678|ref|YP_003404957.1| - 2.1e-05 24.1 4.1 3.3e-05 23.5 2.9 1.3 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|284166678|ref|YP_003404957.1| - 0.00057 19.0 0.5 0.001 18.2 0.3 1.4 1 0 0 1 1 1 1 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CytB6-F_Fe-S PF08802.5 gi|284166678|ref|YP_003404957.1| - 0.0091 15.9 0.2 0.015 15.2 0.1 1.3 1 0 0 1 1 1 1 Cytochrome B6-F complex Fe-S subunit Bax1-I PF01027.15 gi|284166680|ref|YP_003404959.1| - 7.1e-05 22.4 23.6 9.6e-05 22.0 16.4 1.1 1 0 0 1 1 1 1 Inhibitor of apoptosis-promoting Bax1 DPM3 PF08285.6 gi|284166680|ref|YP_003404959.1| - 0.078 12.8 0.4 16 5.3 0.0 2.6 2 0 0 2 2 2 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) 7TM-7TMR_HD PF07698.6 gi|284166680|ref|YP_003404959.1| - 1.1 8.6 18.9 0.81 9.0 10.7 2.4 1 1 0 1 1 1 0 7TM receptor with intracellular HD hydrolase DUF3154 PF11351.3 gi|284166680|ref|YP_003404959.1| - 8.8 6.1 6.5 1.5 8.5 1.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3154) HATPase_c PF02518.21 gi|284166681|ref|YP_003404960.1| - 5.6e-26 90.4 0.0 5.2e-20 71.2 0.0 2.4 1 1 1 2 2 2 2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|284166681|ref|YP_003404960.1| - 2.5e-09 36.9 0.1 2.5e-09 36.9 0.1 2.5 2 1 1 3 3 2 1 His Kinase A (phospho-acceptor) domain SseC PF04888.7 gi|284166681|ref|YP_003404960.1| - 0.0012 18.2 0.1 0.0012 18.2 0.1 1.5 2 0 0 2 2 2 1 Secretion system effector C (SseC) like family DUF3186 PF11382.3 gi|284166681|ref|YP_003404960.1| - 0.0019 17.4 1.0 0.0033 16.5 0.7 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3186) HATPase_c_2 PF13581.1 gi|284166681|ref|YP_003404960.1| - 0.0028 17.4 0.0 0.0071 16.1 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|284166681|ref|YP_003404960.1| - 0.009 15.6 0.0 0.018 14.6 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ApoLp-III PF07464.6 gi|284166681|ref|YP_003404960.1| - 0.017 15.1 3.2 0.94 9.4 1.2 2.2 2 0 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) DUF904 PF06005.7 gi|284166681|ref|YP_003404960.1| - 0.064 13.5 6.2 0.035 14.4 2.6 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF904) TBCA PF02970.11 gi|284166681|ref|YP_003404960.1| - 0.065 13.3 2.3 0.12 12.4 0.7 2.1 3 0 0 3 3 3 0 Tubulin binding cofactor A SNARE PF05739.14 gi|284166681|ref|YP_003404960.1| - 0.069 12.8 2.1 0.071 12.8 0.3 1.9 2 0 0 2 2 2 0 SNARE domain HATPase_c_5 PF14501.1 gi|284166681|ref|YP_003404960.1| - 0.15 11.7 0.0 0.88 9.3 0.0 2.0 1 1 0 1 1 1 0 GHKL domain bZIP_1 PF00170.16 gi|284166681|ref|YP_003404960.1| - 0.19 11.7 2.7 0.37 10.7 1.9 1.4 1 0 0 1 1 1 0 bZIP transcription factor DivIC PF04977.10 gi|284166681|ref|YP_003404960.1| - 1 8.8 5.5 2.2 7.8 3.8 1.5 1 0 0 1 1 1 0 Septum formation initiator bZIP_2 PF07716.10 gi|284166681|ref|YP_003404960.1| - 7.2 6.5 10.2 2.4 8.0 3.0 2.2 1 1 1 2 2 2 0 Basic region leucine zipper HTH_10 PF04967.7 gi|284166682|ref|YP_003404961.1| - 6.8e-15 54.3 0.0 1.1e-14 53.6 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|284166682|ref|YP_003404961.1| - 1.3e-06 27.6 0.3 4.3e-06 25.9 0.0 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.7 gi|284166682|ref|YP_003404961.1| - 0.00036 19.9 0.1 0.21 11.0 0.0 2.5 2 0 0 2 2 2 2 Sigma-70, region 4 HTH_AsnC-type PF13404.1 gi|284166682|ref|YP_003404961.1| - 0.00072 19.0 0.1 0.0014 18.1 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|284166682|ref|YP_003404961.1| - 0.0014 18.2 0.0 0.0028 17.2 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|284166682|ref|YP_003404961.1| - 0.002 17.4 0.0 0.0035 16.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DHHA1 PF02272.14 gi|284166683|ref|YP_003404962.1| - 0.0015 18.1 0.0 0.0059 16.2 0.0 2.0 1 0 0 1 1 1 1 DHHA1 domain PGM_PMM_II PF02879.11 gi|284166683|ref|YP_003404962.1| - 0.014 15.6 0.2 0.08 13.2 0.1 2.3 2 0 0 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DHH PF01368.15 gi|284166683|ref|YP_003404962.1| - 0.14 11.7 1.4 0.38 10.4 0.9 1.7 1 1 0 1 1 1 0 DHH family Amnionless PF14828.1 gi|284166683|ref|YP_003404962.1| - 0.26 9.7 0.1 3.8 5.8 0.0 2.0 2 0 0 2 2 2 0 Amnionless Usp PF00582.21 gi|284166684|ref|YP_003404963.1| - 2.2e-34 118.6 6.7 2.5e-34 118.4 4.6 1.0 1 0 0 1 1 1 1 Universal stress protein family DXP_reductoisom PF02670.11 gi|284166684|ref|YP_003404963.1| - 0.04 14.4 0.2 0.054 14.0 0.1 1.3 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase ETF PF01012.16 gi|284166684|ref|YP_003404963.1| - 0.15 11.7 8.5 0.17 11.6 5.0 1.7 1 1 0 1 1 1 0 Electron transfer flavoprotein domain Usp PF00582.21 gi|284166685|ref|YP_003404964.1| - 1.8e-14 54.0 1.9 3.2e-14 53.2 1.3 1.4 1 1 0 1 1 1 1 Universal stress protein family UPF0149 PF03695.8 gi|284166685|ref|YP_003404964.1| - 0.049 13.5 0.4 0.22 11.4 0.3 2.0 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0149) Acetyltransf_1 PF00583.19 gi|284166686|ref|YP_003404965.1| - 4.1e-17 61.9 0.0 7.1e-17 61.2 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|284166686|ref|YP_003404965.1| - 1.4e-09 38.0 0.0 1.8e-09 37.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|284166686|ref|YP_003404965.1| - 1.8e-08 34.3 0.0 7e-08 32.5 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|284166686|ref|YP_003404965.1| - 8.7e-08 32.4 0.0 1.1e-07 32.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|284166686|ref|YP_003404965.1| - 3.3e-07 30.3 0.0 4.6e-07 29.9 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|284166686|ref|YP_003404965.1| - 2.2e-06 27.3 0.0 3.9e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|284166686|ref|YP_003404965.1| - 2.2e-06 27.5 0.0 5.5e-06 26.2 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|284166686|ref|YP_003404965.1| - 0.00045 20.1 0.0 0.00062 19.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Usp PF00582.21 gi|284166687|ref|YP_003404966.1| - 1.4e-16 60.9 0.2 2.4e-16 60.2 0.1 1.3 1 1 0 1 1 1 1 Universal stress protein family FlgH PF02107.11 gi|284166687|ref|YP_003404966.1| - 0.027 14.0 0.0 0.029 13.9 0.0 1.1 1 0 0 1 1 1 0 Flagellar L-ring protein AAA PF00004.24 gi|284166688|ref|YP_003404967.1| - 2.2e-39 134.6 0.0 5.2e-39 133.4 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|284166688|ref|YP_003404967.1| - 1.9e-06 28.6 2.1 1.1e-05 26.2 0.0 2.8 2 1 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|284166688|ref|YP_003404967.1| - 1.8e-05 24.4 0.0 8.6e-05 22.2 0.0 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|284166688|ref|YP_003404967.1| - 2.1e-05 24.5 5.0 0.022 14.7 0.0 3.6 1 1 2 4 4 4 1 AAA ATPase domain AAA_22 PF13401.1 gi|284166688|ref|YP_003404967.1| - 5.5e-05 23.3 0.4 0.0043 17.2 0.1 3.0 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|284166688|ref|YP_003404967.1| - 6.9e-05 23.1 0.2 0.0053 17.0 0.0 2.7 2 0 0 2 2 2 1 AAA domain AAA_2 PF07724.9 gi|284166688|ref|YP_003404967.1| - 0.00018 21.4 0.0 0.00056 19.8 0.0 1.8 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_25 PF13481.1 gi|284166688|ref|YP_003404967.1| - 0.00047 19.6 0.0 0.0041 16.5 0.0 2.5 1 1 1 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|284166688|ref|YP_003404967.1| - 0.00049 19.9 0.0 0.0027 17.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|284166688|ref|YP_003404967.1| - 0.00084 18.4 0.0 0.0018 17.3 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_28 PF13521.1 gi|284166688|ref|YP_003404967.1| - 0.0011 18.9 0.1 0.0053 16.7 0.0 2.2 2 1 0 2 2 2 1 AAA domain DUF815 PF05673.8 gi|284166688|ref|YP_003404967.1| - 0.0039 16.1 0.1 0.0078 15.1 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) TIP49 PF06068.8 gi|284166688|ref|YP_003404967.1| - 0.008 14.9 0.0 0.016 13.9 0.0 1.5 1 0 0 1 1 1 1 TIP49 C-terminus MMR_HSR1 PF01926.18 gi|284166688|ref|YP_003404967.1| - 0.0096 15.8 0.0 0.022 14.7 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase T2SE PF00437.15 gi|284166688|ref|YP_003404967.1| - 0.0099 14.8 0.0 0.023 13.5 0.0 1.7 2 0 0 2 2 1 1 Type II/IV secretion system protein AAA_19 PF13245.1 gi|284166688|ref|YP_003404967.1| - 0.01 15.5 0.1 0.026 14.2 0.1 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_14 PF13173.1 gi|284166688|ref|YP_003404967.1| - 0.011 15.6 0.5 0.036 13.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|284166688|ref|YP_003404967.1| - 0.013 14.5 0.1 0.037 13.1 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin IstB_IS21 PF01695.12 gi|284166688|ref|YP_003404967.1| - 0.013 14.8 0.0 0.036 13.4 0.0 1.7 1 1 0 1 1 1 0 IstB-like ATP binding protein AAA_11 PF13086.1 gi|284166688|ref|YP_003404967.1| - 0.026 14.0 0.1 0.098 12.2 0.0 1.7 1 1 1 2 2 2 0 AAA domain AAA_3 PF07726.6 gi|284166688|ref|YP_003404967.1| - 0.028 14.0 0.2 0.071 12.7 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|284166688|ref|YP_003404967.1| - 0.029 13.5 0.0 0.069 12.3 0.0 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.17 gi|284166688|ref|YP_003404967.1| - 0.046 13.8 0.0 0.086 13.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase SKI PF01202.17 gi|284166688|ref|YP_003404967.1| - 0.065 13.0 0.0 0.17 11.7 0.0 1.8 1 0 0 1 1 1 0 Shikimate kinase ResIII PF04851.10 gi|284166688|ref|YP_003404967.1| - 0.065 13.0 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit NACHT PF05729.7 gi|284166688|ref|YP_003404967.1| - 0.066 12.8 0.1 3.2 7.3 0.0 2.3 1 1 0 2 2 2 0 NACHT domain ABC_tran PF00005.22 gi|284166688|ref|YP_003404967.1| - 0.11 12.8 0.0 0.38 11.0 0.0 1.9 2 0 0 2 2 2 0 ABC transporter PHP PF02811.14 gi|284166689|ref|YP_003404968.1| - 1.1e-10 41.5 0.0 1.9e-10 40.8 0.0 1.4 1 1 0 1 1 1 1 PHP domain PHP_C PF13263.1 gi|284166689|ref|YP_003404968.1| - 2.5e-06 26.8 0.1 1.3e-05 24.5 0.0 2.2 2 0 0 2 2 2 1 PHP-associated DUF2237 PF09996.4 gi|284166690|ref|YP_003404969.1| - 2.5e-53 178.5 0.0 2.9e-53 178.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2237) Lactamase_B_2 PF12706.2 gi|284166691|ref|YP_003404970.1| - 3e-19 69.3 0.6 5e-19 68.6 0.4 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|284166691|ref|YP_003404970.1| - 2.6e-07 30.4 7.1 3.3e-07 30.1 4.9 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Mur_ligase_M PF08245.7 gi|284166691|ref|YP_003404970.1| - 0.093 12.7 0.1 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Mur ligase middle domain KaiC PF06745.8 gi|284166692|ref|YP_003404971.1| - 2.4e-70 236.2 3.1 5.3e-39 133.6 0.0 2.0 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.1 gi|284166692|ref|YP_003404971.1| - 3.2e-18 65.8 0.0 1.3e-09 37.8 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|284166692|ref|YP_003404971.1| - 3.7e-10 40.0 0.4 0.00027 21.0 0.1 3.0 2 2 0 2 2 2 2 AAA domain DUF2075 PF09848.4 gi|284166692|ref|YP_003404971.1| - 1e-08 34.5 0.0 6.9e-05 21.9 0.0 2.1 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Arch_ATPase PF01637.13 gi|284166692|ref|YP_003404971.1| - 4e-07 29.9 0.0 0.0063 16.2 0.0 2.4 2 1 0 2 2 2 2 Archaeal ATPase RecA PF00154.16 gi|284166692|ref|YP_003404971.1| - 1.8e-06 27.2 0.2 0.00029 19.9 0.0 2.3 2 0 0 2 2 2 1 recA bacterial DNA recombination protein AAA_19 PF13245.1 gi|284166692|ref|YP_003404971.1| - 2.2e-06 27.3 0.0 0.0097 15.6 0.0 2.5 2 0 0 2 2 2 2 Part of AAA domain DnaB_C PF03796.10 gi|284166692|ref|YP_003404971.1| - 3e-06 26.3 0.0 0.011 14.6 0.0 2.3 2 0 0 2 2 2 2 DnaB-like helicase C terminal domain AAA PF00004.24 gi|284166692|ref|YP_003404971.1| - 4.5e-06 26.8 0.5 0.015 15.4 0.0 3.0 2 2 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) ResIII PF04851.10 gi|284166692|ref|YP_003404971.1| - 1.7e-05 24.7 0.0 0.061 13.1 0.0 2.3 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit GvpD PF07088.6 gi|284166692|ref|YP_003404971.1| - 2.4e-05 22.8 0.2 9.1e-05 20.9 0.0 1.9 2 0 0 2 2 2 1 GvpD gas vesicle protein AAA_24 PF13479.1 gi|284166692|ref|YP_003404971.1| - 2.4e-05 24.0 1.5 0.02 14.5 0.0 2.6 2 2 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|284166692|ref|YP_003404971.1| - 2.9e-05 24.1 0.0 0.091 12.7 0.0 2.5 2 0 0 2 2 2 2 AAA ATPase domain IstB_IS21 PF01695.12 gi|284166692|ref|YP_003404971.1| - 0.00012 21.5 0.0 0.56 9.5 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_14 PF13173.1 gi|284166692|ref|YP_003404971.1| - 0.00024 20.9 0.1 1 9.2 0.0 3.1 2 2 0 2 2 2 2 AAA domain Zeta_toxin PF06414.7 gi|284166692|ref|YP_003404971.1| - 0.00031 19.8 0.0 0.033 13.2 0.0 2.6 2 0 0 2 2 2 1 Zeta toxin Rad51 PF08423.6 gi|284166692|ref|YP_003404971.1| - 0.00037 19.4 0.6 0.14 11.0 0.1 3.0 3 0 0 3 3 3 1 Rad51 T2SE PF00437.15 gi|284166692|ref|YP_003404971.1| - 0.00038 19.4 0.2 0.14 11.0 0.0 2.5 2 1 0 2 2 2 1 Type II/IV secretion system protein PhoH PF02562.11 gi|284166692|ref|YP_003404971.1| - 0.00044 19.5 0.2 0.18 10.9 0.0 2.3 2 0 0 2 2 2 1 PhoH-like protein AAA_18 PF13238.1 gi|284166692|ref|YP_003404971.1| - 0.00067 19.9 3.2 0.33 11.2 0.2 2.9 2 2 0 2 2 2 2 AAA domain NACHT PF05729.7 gi|284166692|ref|YP_003404971.1| - 0.0011 18.7 0.0 1.9 8.1 0.0 2.6 2 0 0 2 2 2 2 NACHT domain AAA_11 PF13086.1 gi|284166692|ref|YP_003404971.1| - 0.0021 17.6 0.0 0.73 9.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|284166692|ref|YP_003404971.1| - 0.0052 16.3 0.0 3.3 7.2 0.0 2.3 2 0 0 2 2 2 1 AAA domain ABC_tran PF00005.22 gi|284166692|ref|YP_003404971.1| - 0.0056 16.9 0.0 0.92 9.7 0.0 2.4 2 0 0 2 2 2 1 ABC transporter AAA_5 PF07728.9 gi|284166692|ref|YP_003404971.1| - 0.0058 16.3 0.2 0.95 9.1 0.0 3.1 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) Zot PF05707.7 gi|284166692|ref|YP_003404971.1| - 0.0084 15.5 0.0 3.1 7.2 0.0 2.6 3 0 0 3 3 2 1 Zonular occludens toxin (Zot) NTPase_1 PF03266.10 gi|284166692|ref|YP_003404971.1| - 0.012 15.3 1.4 1.5 8.5 0.5 2.8 2 2 0 2 2 2 0 NTPase PAXNEB PF05625.6 gi|284166692|ref|YP_003404971.1| - 0.015 14.1 0.9 0.049 12.4 0.1 2.1 3 0 0 3 3 3 0 PAXNEB protein RNA_helicase PF00910.17 gi|284166692|ref|YP_003404971.1| - 0.021 14.9 0.0 4.8 7.4 0.0 2.5 2 0 0 2 2 2 0 RNA helicase cobW PF02492.14 gi|284166692|ref|YP_003404971.1| - 0.033 13.6 0.1 7.6 5.9 0.0 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|284166692|ref|YP_003404971.1| - 0.034 13.8 0.1 1.2 8.8 0.1 3.0 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B CbiA PF01656.18 gi|284166692|ref|YP_003404971.1| - 0.035 13.5 0.5 0.21 10.9 0.1 2.3 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain DEAD PF00270.24 gi|284166692|ref|YP_003404971.1| - 0.039 13.4 0.2 7.4 6.0 0.0 2.9 3 0 0 3 3 3 0 DEAD/DEAH box helicase AAA_17 PF13207.1 gi|284166692|ref|YP_003404971.1| - 0.046 14.5 4.0 1.4 9.7 0.0 3.3 2 2 0 2 2 2 0 AAA domain TrwB_AAD_bind PF10412.4 gi|284166692|ref|YP_003404971.1| - 0.056 12.0 0.4 0.5 8.9 0.0 2.3 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain UPF0079 PF02367.12 gi|284166692|ref|YP_003404971.1| - 0.061 12.9 0.5 5.2 6.7 0.0 2.3 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 AAA_29 PF13555.1 gi|284166692|ref|YP_003404971.1| - 0.09 12.3 2.0 0.77 9.3 0.3 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|284166692|ref|YP_003404971.1| - 0.1 12.8 0.4 0.33 11.2 0.3 1.8 1 0 0 1 1 1 0 AAA domain Lipase_GDSL_3 PF14606.1 gi|284166692|ref|YP_003404971.1| - 0.14 11.8 0.0 0.28 10.9 0.0 1.5 1 0 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family HATPase_c PF02518.21 gi|284166693|ref|YP_003404972.1| - 4.9e-32 109.9 0.0 8.2e-32 109.2 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|284166693|ref|YP_003404972.1| - 3.1e-11 43.1 0.5 4.8e-10 39.2 0.0 2.7 2 1 1 3 3 3 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.1 gi|284166693|ref|YP_003404972.1| - 0.0005 19.7 0.0 0.00097 18.8 0.0 1.4 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.1 gi|284166693|ref|YP_003404972.1| - 0.0018 17.9 0.0 0.0035 16.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase His_kinase PF06580.8 gi|284166693|ref|YP_003404972.1| - 0.022 14.6 0.0 0.053 13.4 0.0 1.7 2 0 0 2 2 2 0 Histidine kinase DUF1939 PF09154.5 gi|284166694|ref|YP_003404973.1| - 0.11 12.3 0.0 0.25 11.2 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1939) Usp PF00582.21 gi|284166695|ref|YP_003404974.1| - 1e-31 110.0 0.2 1.2e-31 109.7 0.2 1.1 1 0 0 1 1 1 1 Universal stress protein family MSSP PF03940.8 gi|284166696|ref|YP_003404975.1| - 0.94 8.9 6.7 1.6 8.1 4.6 1.3 1 0 0 1 1 1 0 Male specific sperm protein PhoU PF01895.14 gi|284166697|ref|YP_003404976.1| - 3.3e-23 81.9 8.2 3.6e-16 59.3 1.0 2.3 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|284166697|ref|YP_003404976.1| - 1.5e-08 34.1 0.1 5.3e-08 32.4 0.0 2.0 2 0 0 2 2 2 1 Antidote-toxin recognition MazE TMCO5 PF14992.1 gi|284166697|ref|YP_003404976.1| - 0.027 13.6 0.4 0.048 12.7 0.3 1.6 1 1 0 1 1 1 0 TMCO5 family DUF3209 PF11483.3 gi|284166697|ref|YP_003404976.1| - 0.61 10.4 5.6 4.2 7.7 0.0 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF3209) ABC_tran PF00005.22 gi|284166698|ref|YP_003404977.1| - 1.2e-31 109.8 0.0 2e-31 109.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284166698|ref|YP_003404977.1| - 1.9e-14 54.3 0.0 2.6e-07 30.8 0.0 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|284166698|ref|YP_003404977.1| - 2.8e-09 36.5 0.0 9.4e-06 25.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|284166698|ref|YP_003404977.1| - 1.2e-05 25.5 0.0 2.1e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|284166698|ref|YP_003404977.1| - 5.4e-05 22.4 0.0 0.11 11.5 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.1 gi|284166698|ref|YP_003404977.1| - 0.00011 22.2 1.4 0.00071 19.6 1.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|284166698|ref|YP_003404977.1| - 0.00016 21.1 0.0 0.00041 19.8 0.0 1.6 2 0 0 2 2 2 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|284166698|ref|YP_003404977.1| - 0.00045 19.4 0.0 0.00092 18.4 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|284166698|ref|YP_003404977.1| - 0.00072 19.0 0.0 0.008 15.5 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|284166698|ref|YP_003404977.1| - 0.0012 19.1 0.1 0.0062 16.8 0.0 2.0 2 1 0 2 2 2 1 AAA domain DeoRC PF00455.17 gi|284166698|ref|YP_003404977.1| - 0.0015 18.2 0.0 0.0024 17.5 0.0 1.3 1 0 0 1 1 1 1 DeoR C terminal sensor domain Adeno_IVa2 PF02456.10 gi|284166698|ref|YP_003404977.1| - 0.0017 17.0 0.0 0.022 13.4 0.0 2.0 2 0 0 2 2 2 1 Adenovirus IVa2 protein ABC_ATPase PF09818.4 gi|284166698|ref|YP_003404977.1| - 0.0061 15.1 0.0 0.52 8.8 0.0 2.1 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA_33 PF13671.1 gi|284166698|ref|YP_003404977.1| - 0.0089 15.9 0.0 0.027 14.3 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|284166698|ref|YP_003404977.1| - 0.01 15.5 0.0 3.6 7.3 0.0 2.5 2 0 0 2 2 2 0 Part of AAA domain AAA_17 PF13207.1 gi|284166698|ref|YP_003404977.1| - 0.035 14.9 0.7 0.11 13.3 0.5 2.2 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|284166698|ref|YP_003404977.1| - 0.056 12.8 0.0 0.15 11.5 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain Arch_ATPase PF01637.13 gi|284166698|ref|YP_003404977.1| - 0.11 12.1 0.1 0.46 10.1 0.1 2.0 1 1 0 1 1 1 0 Archaeal ATPase Rad17 PF03215.10 gi|284166698|ref|YP_003404977.1| - 0.12 10.9 0.0 0.21 10.2 0.0 1.3 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein MobB PF03205.9 gi|284166698|ref|YP_003404977.1| - 0.13 11.9 0.1 4.1 7.1 0.0 2.7 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.7 gi|284166698|ref|YP_003404977.1| - 0.14 11.7 0.0 0.33 10.6 0.0 1.6 2 0 0 2 2 2 0 NACHT domain PhoU PF01895.14 gi|284166699|ref|YP_003404978.1| - 1.4e-35 121.5 12.0 5.2e-18 65.2 1.9 2.2 2 0 0 2 2 2 2 PhoU domain HTH_20 PF12840.2 gi|284166700|ref|YP_003404979.1| - 9.1e-11 41.4 0.2 1.8e-10 40.4 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|284166700|ref|YP_003404979.1| - 6.9e-09 35.2 0.1 6.9e-09 35.2 0.1 1.9 2 1 0 2 2 2 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|284166700|ref|YP_003404979.1| - 0.00021 20.9 0.0 0.00042 19.9 0.0 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.16 gi|284166700|ref|YP_003404979.1| - 0.00099 18.4 0.0 0.002 17.5 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR_2 PF12802.2 gi|284166700|ref|YP_003404979.1| - 0.0045 16.6 0.1 0.013 15.1 0.1 1.9 1 1 0 1 1 1 1 MarR family PaaX PF07848.7 gi|284166700|ref|YP_003404979.1| - 0.0084 16.0 0.1 0.023 14.6 0.0 1.8 2 0 0 2 2 2 1 PaaX-like protein RP-C PF03428.8 gi|284166700|ref|YP_003404979.1| - 0.012 15.1 0.3 0.024 14.1 0.2 1.5 1 1 0 1 1 1 0 Replication protein C N-terminal domain Penicillinase_R PF03965.11 gi|284166700|ref|YP_003404979.1| - 0.038 14.0 0.1 0.15 12.1 0.0 2.0 1 1 1 2 2 2 0 Penicillinase repressor AIRS_C PF02769.17 gi|284166700|ref|YP_003404979.1| - 0.04 13.9 0.1 0.048 13.6 0.0 1.2 1 0 0 1 1 1 0 AIR synthase related protein, C-terminal domain HTH_27 PF13463.1 gi|284166700|ref|YP_003404979.1| - 0.057 13.7 0.1 0.16 12.2 0.0 1.8 1 1 1 2 2 2 0 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|284166700|ref|YP_003404979.1| - 0.058 13.4 0.0 0.12 12.4 0.0 1.6 1 1 0 1 1 1 0 Winged helix DNA-binding domain DUF4423 PF14394.1 gi|284166700|ref|YP_003404979.1| - 0.058 12.9 0.0 0.075 12.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Rrf2 PF02082.15 gi|284166700|ref|YP_003404979.1| - 0.13 12.3 0.0 0.3 11.2 0.0 1.6 1 1 0 1 1 1 0 Transcriptional regulator SBF PF01758.11 gi|284166701|ref|YP_003404980.1| - 2.9e-45 153.9 9.1 2.9e-45 153.9 6.3 2.1 2 0 0 2 2 2 1 Sodium Bile acid symporter family DUF543 PF04418.7 gi|284166701|ref|YP_003404980.1| - 8.1 6.4 8.9 14 5.7 0.3 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF543) LMWPc PF01451.16 gi|284166702|ref|YP_003404981.1| - 2.1e-25 89.6 0.0 2.7e-25 89.2 0.0 1.1 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase PBP_like_2 PF12849.2 gi|284166703|ref|YP_003404982.1| - 1.7e-27 96.6 3.9 2.5e-27 96.0 2.7 1.2 1 0 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|284166703|ref|YP_003404982.1| - 1.5e-15 56.7 0.0 3e-15 55.6 0.0 1.5 1 0 0 1 1 1 1 PBP superfamily domain TAT_signal PF10518.4 gi|284166703|ref|YP_003404982.1| - 0.011 15.7 2.3 0.019 14.9 1.6 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|284166703|ref|YP_003404982.1| - 0.082 12.0 1.3 0.18 10.9 0.9 1.6 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal BPD_transp_1 PF00528.17 gi|284166704|ref|YP_003404983.1| - 2.3e-16 59.8 16.2 2.3e-16 59.8 11.2 2.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|284166705|ref|YP_003404984.1| - 6.2e-21 74.7 14.0 6.2e-21 74.7 9.7 4.5 2 1 3 5 5 5 1 Binding-protein-dependent transport system inner membrane component zf-C2H2_4 PF13894.1 gi|284166706|ref|YP_003404985.1| - 0.058 13.7 0.1 0.081 13.2 0.0 1.2 1 0 0 1 1 1 0 C2H2-type zinc finger zf-Di19 PF05605.7 gi|284166706|ref|YP_003404985.1| - 0.071 13.2 0.1 0.092 12.8 0.1 1.2 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding Gas_vesicle_C PF01304.12 gi|284166707|ref|YP_003404986.1| - 0.025 14.1 2.7 0.04 13.5 1.9 1.4 1 0 0 1 1 1 0 Gas vesicles protein GVPc repeated domain GTP_EFTU PF00009.22 gi|284166708|ref|YP_003404987.1| - 6.7e-42 143.0 0.0 9.8e-42 142.5 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|284166708|ref|YP_003404987.1| - 5.4e-27 93.6 0.0 1.1e-26 92.7 0.0 1.5 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.20 gi|284166708|ref|YP_003404987.1| - 1.7e-07 31.2 2.4 6.1e-07 29.4 1.7 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|284166708|ref|YP_003404987.1| - 0.0019 18.1 0.0 0.0037 17.1 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase PduV-EutP PF10662.4 gi|284166708|ref|YP_003404987.1| - 0.0074 15.7 0.2 0.11 11.9 0.0 2.3 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation FeoB_N PF02421.13 gi|284166708|ref|YP_003404987.1| - 0.029 13.6 0.4 4.5 6.5 0.0 2.5 2 1 0 2 2 2 0 Ferrous iron transport protein B SRPRB PF09439.5 gi|284166708|ref|YP_003404987.1| - 0.057 12.6 0.0 3.3 6.8 0.0 2.2 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit MMR_HSR1_C PF08438.5 gi|284166708|ref|YP_003404987.1| - 0.075 13.2 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 GTPase of unknown function C-terminal Fcf1 PF04900.7 gi|284166709|ref|YP_003404988.1| - 1.3e-07 31.6 0.0 1.6e-07 31.3 0.0 1.1 1 0 0 1 1 1 1 Fcf1 DUF188 PF02639.9 gi|284166709|ref|YP_003404988.1| - 1.1e-06 28.1 0.1 1.5e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized BCR, YaiI/YqxD family COG1671 XPG_I PF00867.13 gi|284166709|ref|YP_003404988.1| - 0.11 12.5 0.1 0.19 11.7 0.1 1.4 1 0 0 1 1 1 0 XPG I-region SHS2_Rpb7-N PF03876.12 gi|284166710|ref|YP_003404989.1| - 2.1e-15 56.6 0.0 3.3e-15 55.9 0.0 1.3 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.18 gi|284166710|ref|YP_003404989.1| - 1.7e-12 47.2 0.3 4e-12 46.0 0.2 1.6 1 0 0 1 1 1 1 S1 RNA binding domain Spt4 PF06093.8 gi|284166711|ref|YP_003404990.1| - 1.1e-13 50.8 0.2 1.3e-13 50.5 0.1 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger DZR PF12773.2 gi|284166711|ref|YP_003404990.1| - 0.0014 18.4 0.4 0.0015 18.2 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|284166711|ref|YP_003404990.1| - 0.12 11.5 1.6 0.19 11.0 1.1 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Cytochrom_c3_2 PF14537.1 gi|284166711|ref|YP_003404990.1| - 0.46 10.8 4.1 0.68 10.3 2.6 1.4 1 1 0 1 1 1 0 Cytochrome c3 Nudix_N_2 PF14803.1 gi|284166711|ref|YP_003404990.1| - 0.96 9.1 4.9 0.89 9.2 0.6 2.2 2 0 0 2 2 2 0 Nudix N-terminal Zn-ribbon_8 PF09723.5 gi|284166711|ref|YP_003404990.1| - 2.7 8.0 5.1 14 5.7 3.4 2.0 1 1 1 2 2 2 0 Zinc ribbon domain DUF359 PF04019.7 gi|284166712|ref|YP_003404991.1| - 4.9e-37 126.0 0.1 6.3e-37 125.6 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) DUF4175 PF13779.1 gi|284166713|ref|YP_003404992.1| - 0.011 13.4 4.5 0.013 13.2 3.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4175) Entericidin PF08085.6 gi|284166713|ref|YP_003404992.1| - 0.097 12.4 0.9 2.1 8.2 0.1 2.9 2 0 0 2 2 2 0 Entericidin EcnA/B family FAA_hydrolase PF01557.13 gi|284166714|ref|YP_003404993.1| - 1.8e-55 187.7 3.7 2.9e-55 187.0 0.1 2.0 2 0 0 2 2 2 1 Fumarylacetoacetate (FAA) hydrolase family Cyclase PF04199.8 gi|284166715|ref|YP_003404994.1| - 1.2e-40 138.9 0.0 1.6e-40 138.6 0.0 1.2 1 0 0 1 1 1 1 Putative cyclase FAD_binding_3 PF01494.14 gi|284166716|ref|YP_003404995.1| - 1.7e-13 50.3 0.1 1.6e-09 37.2 0.0 3.0 3 0 0 3 3 3 2 FAD binding domain DAO PF01266.19 gi|284166716|ref|YP_003404995.1| - 1.4e-09 37.3 0.2 0.00041 19.3 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|284166716|ref|YP_003404995.1| - 5.7e-07 28.7 0.0 0.00083 18.3 0.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein Pyr_redox_2 PF07992.9 gi|284166716|ref|YP_003404995.1| - 0.00038 20.3 0.0 0.00086 19.2 0.0 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|284166716|ref|YP_003404995.1| - 0.00038 19.6 0.2 0.00055 19.1 0.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|284166716|ref|YP_003404995.1| - 0.013 14.0 0.0 0.036 12.5 0.0 1.6 2 0 0 2 2 2 0 HI0933-like protein FAD_binding_2 PF00890.19 gi|284166716|ref|YP_003404995.1| - 0.018 13.9 0.6 0.16 10.7 0.0 2.1 1 1 0 2 2 2 0 FAD binding domain Trp_halogenase PF04820.9 gi|284166716|ref|YP_003404995.1| - 0.052 12.1 0.0 0.16 10.5 0.0 1.8 1 1 0 1 1 1 0 Tryptophan halogenase NAD_binding_8 PF13450.1 gi|284166716|ref|YP_003404995.1| - 0.098 12.6 0.1 0.34 10.9 0.1 2.1 1 1 0 1 1 1 0 NAD(P)-binding Rossmann-like domain MatE PF01554.13 gi|284166717|ref|YP_003404996.1| - 2.4e-40 137.7 30.6 4.5e-22 78.4 7.0 2.6 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|284166717|ref|YP_003404996.1| - 1.5e-06 28.0 7.4 1.5e-06 28.0 5.1 4.3 3 1 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain FAD_binding_4 PF01565.18 gi|284166718|ref|YP_003404997.1| - 1e-34 119.0 6.6 1.5e-34 118.4 4.6 1.2 1 0 0 1 1 1 1 FAD binding domain BBE PF08031.7 gi|284166718|ref|YP_003404997.1| - 9.7e-09 35.0 0.1 2.3e-08 33.7 0.1 1.6 1 0 0 1 1 1 1 Berberine and berberine like Cytokin-bind PF09265.5 gi|284166718|ref|YP_003404997.1| - 0.053 12.6 0.0 0.083 12.0 0.0 1.2 1 0 0 1 1 1 0 Cytokinin dehydrogenase 1, FAD and cytokinin binding Titin_Z PF09042.6 gi|284166718|ref|YP_003404997.1| - 0.11 12.0 0.1 0.25 10.9 0.1 1.6 1 0 0 1 1 1 0 Titin Z FAD_binding_4 PF01565.18 gi|284166719|ref|YP_003404998.1| - 8.1e-35 119.3 0.6 1.3e-34 118.5 0.4 1.4 1 0 0 1 1 1 1 FAD binding domain BBE PF08031.7 gi|284166719|ref|YP_003404998.1| - 4.7e-13 48.8 0.3 4.7e-13 48.8 0.2 2.2 3 0 0 3 3 3 1 Berberine and berberine like DUF3487 PF11990.3 gi|284166721|ref|YP_003405000.1| - 0.15 11.4 0.7 0.23 10.8 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3487) Bacteriocin_IIc PF10439.4 gi|284166721|ref|YP_003405000.1| - 1.8 8.7 7.0 2.2 8.4 4.8 1.1 1 0 0 1 1 1 0 Bacteriocin class II with double-glycine leader peptide ATPase_gene1 PF09527.5 gi|284166721|ref|YP_003405000.1| - 6.5 6.6 11.1 12 5.7 7.7 1.4 1 1 0 1 1 1 0 Putative F0F1-ATPase subunit (ATPase_gene1) DUF389 PF04087.9 gi|284166722|ref|YP_003405001.1| - 1.9e-31 108.8 21.2 1.9e-31 108.8 14.7 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF389) MtN3_slv PF03083.11 gi|284166722|ref|YP_003405001.1| - 0.078 12.8 0.3 0.71 9.7 0.1 2.2 2 0 0 2 2 2 0 Sugar efflux transporter for intercellular exchange MFS_1 PF07690.11 gi|284166724|ref|YP_003405003.1| - 3e-23 82.1 78.7 8.2e-18 64.2 32.2 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily GCV_T PF01571.16 gi|284166725|ref|YP_003405004.1| - 9e-38 129.7 0.0 1.3e-37 129.2 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.6 gi|284166725|ref|YP_003405004.1| - 1.5e-15 57.0 0.1 3.2e-15 55.9 0.1 1.6 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain HTH_20 PF12840.2 gi|284166726|ref|YP_003405005.1| - 0.00013 21.6 0.1 0.00018 21.2 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain RPA_C PF08784.6 gi|284166726|ref|YP_003405005.1| - 0.00066 20.0 0.0 0.00091 19.6 0.0 1.1 1 0 0 1 1 1 1 Replication protein A C terminal MarR_2 PF12802.2 gi|284166726|ref|YP_003405005.1| - 0.00094 18.7 0.3 0.0012 18.4 0.2 1.1 1 0 0 1 1 1 1 MarR family GntR PF00392.16 gi|284166726|ref|YP_003405005.1| - 0.002 17.5 0.1 0.0028 17.0 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_34 PF13601.1 gi|284166726|ref|YP_003405005.1| - 0.04 13.9 0.0 0.051 13.6 0.0 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain Sigma70_r1_1 PF03979.9 gi|284166726|ref|YP_003405005.1| - 0.043 13.7 3.0 0.058 13.3 1.9 1.3 1 1 0 1 1 1 0 Sigma-70 factor, region 1.1 Rrf2 PF02082.15 gi|284166726|ref|YP_003405005.1| - 0.068 13.2 0.0 0.088 12.9 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator DUF3006 PF11213.3 gi|284166726|ref|YP_003405005.1| - 0.077 12.7 0.6 1.5 8.6 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3006) XdhC_CoxI PF02625.11 gi|284166727|ref|YP_003405006.1| - 0.0076 15.8 0.0 0.02 14.4 0.0 1.7 1 0 0 1 1 1 1 XdhC and CoxI family CbtA PF09490.5 gi|284166730|ref|YP_003405009.1| - 0.12 11.6 1.0 0.13 11.5 0.7 1.0 1 0 0 1 1 1 0 Probable cobalt transporter subunit (CbtA) DUF1206 PF06724.6 gi|284166730|ref|YP_003405009.1| - 3.2 7.5 6.6 0.54 10.0 0.7 1.9 1 1 1 2 2 2 0 Domain of Unknown Function (DUF1206) Chlor_dismutase PF06778.7 gi|284166731|ref|YP_003405010.1| - 1.9e-48 164.7 0.0 3.2e-48 164.0 0.0 1.4 1 0 0 1 1 1 1 Chlorite dismutase ABM PF03992.11 gi|284166731|ref|YP_003405010.1| - 1.6e-09 37.6 0.2 1.6e-09 37.6 0.1 4.1 4 0 0 4 4 4 1 Antibiotic biosynthesis monooxygenase PadR PF03551.9 gi|284166732|ref|YP_003405011.1| - 1.9e-22 78.7 0.2 3.3e-22 78.0 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|284166732|ref|YP_003405011.1| - 0.077 13.3 0.0 0.2 12.0 0.0 1.7 1 1 0 1 1 1 0 Winged helix DNA-binding domain AphA_like PF14557.1 gi|284166732|ref|YP_003405011.1| - 0.13 11.8 0.0 0.19 11.2 0.0 1.2 1 0 0 1 1 1 0 Putative AphA-like transcriptional regulator TrmB PF01978.14 gi|284166732|ref|YP_003405011.1| - 0.13 11.9 0.0 0.44 10.2 0.0 1.9 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Peptidase_M50 PF02163.17 gi|284166733|ref|YP_003405012.1| - 2.7e-27 94.9 1.1 3.2e-27 94.7 0.0 1.7 2 0 0 2 2 2 1 Peptidase family M50 PDZ_2 PF13180.1 gi|284166733|ref|YP_003405012.1| - 4.2e-19 68.2 5.0 2.9e-06 27.0 0.1 3.4 2 1 1 3 3 3 3 PDZ domain PDZ PF00595.19 gi|284166733|ref|YP_003405012.1| - 4.1e-08 33.2 0.3 0.00013 22.0 0.1 2.5 2 0 0 2 2 2 2 PDZ domain (Also known as DHR or GLGF) Tricorn_PDZ PF14685.1 gi|284166733|ref|YP_003405012.1| - 2.1e-05 24.2 0.6 0.011 15.4 0.0 3.2 2 1 1 3 3 3 1 Tricorn protease PDZ domain RskA PF10099.4 gi|284166733|ref|YP_003405012.1| - 0.074 12.7 3.0 0.59 9.8 0.1 2.5 2 0 0 2 2 2 0 Anti-sigma-K factor rskA tRNA-synt_1f PF01921.13 gi|284166734|ref|YP_003405013.1| - 2.8e-102 342.0 0.0 4e-102 341.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|284166734|ref|YP_003405013.1| - 4.4e-09 35.4 0.0 5.7e-07 28.5 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|284166734|ref|YP_003405013.1| - 0.0027 16.8 0.0 0.0085 15.2 0.0 1.7 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1b PF00579.20 gi|284166734|ref|YP_003405013.1| - 0.017 14.2 0.0 4.4 6.3 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (W and Y) Taeniidae_ag PF05596.6 gi|284166734|ref|YP_003405013.1| - 0.23 11.2 0.9 7.9 6.3 0.0 2.6 2 0 0 2 2 2 0 Taeniidae antigen AA_kinase PF00696.23 gi|284166735|ref|YP_003405014.1| - 2.3e-28 99.3 4.2 2.8e-28 99.0 2.9 1.1 1 0 0 1 1 1 1 Amino acid kinase family PGA_cap PF09587.5 gi|284166736|ref|YP_003405015.1| - 3.2e-65 219.9 0.0 3.8e-65 219.6 0.0 1.1 1 0 0 1 1 1 1 Bacterial capsule synthesis protein PGA_cap DUF1491 PF07372.7 gi|284166736|ref|YP_003405015.1| - 0.027 14.3 0.2 0.083 12.8 0.1 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF1491) Antigen_Bd37 PF11641.3 gi|284166736|ref|YP_003405015.1| - 0.17 11.1 0.0 0.28 10.4 0.0 1.2 1 0 0 1 1 1 0 Glycosylphosphatidylinositol-anchored merozoite surface protein MoaE PF02391.12 gi|284166737|ref|YP_003405016.1| - 2.8e-21 75.5 0.3 4.8e-21 74.7 0.2 1.4 1 0 0 1 1 1 1 MoaE protein DUF3906 PF13046.1 gi|284166737|ref|YP_003405016.1| - 0.13 11.8 0.1 0.26 10.9 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3906) Peptidase_M50 PF02163.17 gi|284166739|ref|YP_003405018.1| - 5e-15 54.9 6.0 1e-14 53.9 0.8 2.7 2 1 0 2 2 2 1 Peptidase family M50 AIRS PF00586.19 gi|284166740|ref|YP_003405019.1| - 5e-17 61.9 2.0 1.2e-16 60.6 1.4 1.7 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|284166740|ref|YP_003405019.1| - 1.9e-12 47.4 0.4 2.9e-12 46.8 0.3 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain Ribosomal_S19e PF01090.14 gi|284166741|ref|YP_003405020.1| - 6.5e-46 155.2 0.0 7.4e-46 155.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e HTH_45 PF14947.1 gi|284166741|ref|YP_003405020.1| - 0.018 14.8 0.0 0.028 14.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_12 PF08461.5 gi|284166741|ref|YP_003405020.1| - 0.035 13.8 1.1 0.093 12.4 0.1 2.1 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain Rrf2 PF02082.15 gi|284166741|ref|YP_003405020.1| - 0.047 13.7 0.0 0.17 12.0 0.0 1.8 2 0 0 2 2 2 0 Transcriptional regulator Met_synt_B12 PF02965.12 gi|284166741|ref|YP_003405020.1| - 0.052 12.7 0.0 0.093 11.9 0.0 1.4 1 0 0 1 1 1 0 Vitamin B12 dependent methionine synthase, activation domain dsDNA_bind PF01984.15 gi|284166742|ref|YP_003405021.1| - 3.1e-29 101.0 14.6 3.7e-29 100.8 10.1 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain PCI PF01399.22 gi|284166742|ref|YP_003405021.1| - 0.019 15.2 0.1 0.034 14.4 0.1 1.7 1 1 0 1 1 1 0 PCI domain Peptidase_M3_N PF08439.5 gi|284166742|ref|YP_003405021.1| - 0.66 10.0 3.0 22 5.2 0.0 2.4 2 0 0 2 2 2 0 Oligopeptidase F FerA PF08165.6 gi|284166742|ref|YP_003405021.1| - 1.1 8.9 4.4 0.6 9.8 0.7 2.2 3 0 0 3 3 3 0 FerA (NUC095) domain Hid1 PF12722.2 gi|284166742|ref|YP_003405021.1| - 6.8 4.2 6.9 7.5 4.0 4.8 1.0 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein Asn_synthase PF00733.16 gi|284166743|ref|YP_003405022.1| - 5.8e-05 22.7 0.1 0.00012 21.6 0.0 1.5 2 0 0 2 2 2 1 Asparagine synthase QueC PF06508.8 gi|284166743|ref|YP_003405022.1| - 0.029 13.6 0.0 0.048 12.9 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC HHH_5 PF14520.1 gi|284166743|ref|YP_003405022.1| - 0.085 13.0 0.3 0.26 11.4 0.2 2.0 1 1 0 1 1 1 0 Helix-hairpin-helix domain ATP_bind_4 PF01902.12 gi|284166743|ref|YP_003405022.1| - 0.091 12.1 0.0 0.13 11.5 0.0 1.3 1 0 0 1 1 1 0 ATP-binding region HATPase_c PF02518.21 gi|284166744|ref|YP_003405023.1| - 6.2e-19 67.7 0.0 1e-18 67.0 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|284166744|ref|YP_003405023.1| - 7.2e-08 32.3 2.1 9.3e-08 31.9 0.3 2.1 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.1 gi|284166744|ref|YP_003405023.1| - 3.5e-06 26.8 0.1 9.4e-06 25.4 0.0 1.6 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|284166744|ref|YP_003405023.1| - 0.009 15.6 0.0 0.035 13.7 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|284166744|ref|YP_003405023.1| - 0.18 11.5 0.0 0.38 10.4 0.0 1.5 1 1 0 1 1 1 0 GHKL domain tRNA-synt_His PF13393.1 gi|284166745|ref|YP_003405024.1| - 2e-53 181.4 0.1 2.5e-53 181.1 0.1 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|284166745|ref|YP_003405024.1| - 5.2e-22 78.2 0.0 7.5e-22 77.7 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|284166745|ref|YP_003405024.1| - 1.6e-11 43.9 0.1 3.4e-11 42.9 0.1 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2d PF01409.15 gi|284166745|ref|YP_003405024.1| - 0.03 13.5 0.0 0.067 12.3 0.0 1.6 1 1 0 1 1 1 0 tRNA synthetases class II core domain (F) DoxX PF07681.7 gi|284166747|ref|YP_003405026.1| - 8.8e-07 29.2 10.2 8.8e-07 29.2 7.1 1.8 2 0 0 2 2 2 1 DoxX DoxD PF04173.8 gi|284166747|ref|YP_003405026.1| - 5.4e-06 26.1 6.2 4.1e-05 23.3 4.3 1.9 1 1 0 1 1 1 1 TQO small subunit DoxD MauE PF07291.6 gi|284166747|ref|YP_003405026.1| - 0.045 13.3 0.6 0.072 12.7 0.4 1.3 1 0 0 1 1 1 0 Methylamine utilisation protein MauE Sulfatase PF00884.18 gi|284166748|ref|YP_003405027.1| - 9.1e-50 169.5 0.1 1.6e-49 168.8 0.0 1.4 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|284166748|ref|YP_003405027.1| - 1.9e-11 43.9 0.1 9.6e-05 21.8 0.0 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.12 gi|284166748|ref|YP_003405027.1| - 0.0006 18.3 0.2 0.00088 17.8 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF229) DUF1501 PF07394.7 gi|284166748|ref|YP_003405027.1| - 0.0084 14.9 0.6 0.076 11.8 0.4 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF1501) Prok-JAB PF14464.1 gi|284166749|ref|YP_003405028.1| - 5.6e-21 74.0 0.1 7.1e-21 73.7 0.1 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.16 gi|284166749|ref|YP_003405028.1| - 4.1e-08 32.9 0.0 5.7e-08 32.4 0.0 1.2 1 0 0 1 1 1 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease Toxin-JAB1 PF15659.1 gi|284166749|ref|YP_003405028.1| - 0.071 12.9 0.0 0.084 12.7 0.0 1.1 1 0 0 1 1 1 0 JAB-like toxin 1 Peripla_BP_2 PF01497.13 gi|284166750|ref|YP_003405029.1| - 7.5e-37 126.7 0.3 1e-36 126.3 0.2 1.1 1 0 0 1 1 1 1 Periplasmic binding protein DUF883 PF05957.8 gi|284166750|ref|YP_003405029.1| - 0.03 14.7 0.1 0.072 13.4 0.1 1.6 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF883) Oxidored_nitro PF00148.14 gi|284166750|ref|YP_003405029.1| - 0.096 11.3 0.1 1.4 7.4 0.0 2.1 2 0 0 2 2 2 0 Nitrogenase component 1 type Oxidoreductase F420_oxidored PF03807.12 gi|284166751|ref|YP_003405030.1| - 6.5e-21 74.5 0.0 1.3e-20 73.6 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Semialdhyde_dh PF01118.19 gi|284166751|ref|YP_003405030.1| - 1.5e-06 28.5 0.0 4.3e-05 23.7 0.0 2.1 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|284166751|ref|YP_003405030.1| - 3.3e-06 27.2 0.1 6e-06 26.3 0.0 1.5 1 0 0 1 1 1 1 NADH(P)-binding NAD_Gly3P_dh_N PF01210.18 gi|284166751|ref|YP_003405030.1| - 9.8e-06 25.3 0.0 1.4e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|284166751|ref|YP_003405030.1| - 6.3e-05 22.4 0.0 8.8e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA adh_short PF00106.20 gi|284166751|ref|YP_003405030.1| - 0.00074 19.4 1.6 0.0014 18.5 0.1 2.0 2 0 0 2 2 2 1 short chain dehydrogenase KR PF08659.5 gi|284166751|ref|YP_003405030.1| - 0.0068 16.0 0.4 0.021 14.4 0.0 1.9 2 0 0 2 2 2 1 KR domain TrkA_N PF02254.13 gi|284166751|ref|YP_003405030.1| - 0.0079 16.1 0.6 0.017 15.1 0.1 1.8 2 0 0 2 2 2 1 TrkA-N domain 3HCDH_N PF02737.13 gi|284166751|ref|YP_003405030.1| - 0.01 15.4 0.0 0.019 14.5 0.0 1.5 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PDH PF02153.12 gi|284166751|ref|YP_003405030.1| - 0.012 14.5 0.0 0.018 13.9 0.0 1.3 1 0 0 1 1 1 0 Prephenate dehydrogenase GFO_IDH_MocA PF01408.17 gi|284166751|ref|YP_003405030.1| - 0.018 15.5 0.0 0.041 14.3 0.0 1.6 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold DUF1995 PF09353.5 gi|284166751|ref|YP_003405030.1| - 0.025 14.1 0.0 0.055 13.0 0.0 1.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1995) Bac_luciferase PF00296.15 gi|284166751|ref|YP_003405030.1| - 0.032 13.3 0.5 0.055 12.5 0.3 1.3 1 0 0 1 1 1 0 Luciferase-like monooxygenase DapB_N PF01113.15 gi|284166751|ref|YP_003405030.1| - 0.097 12.5 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus NmrA PF05368.8 gi|284166751|ref|YP_003405030.1| - 0.12 11.5 0.0 0.2 10.8 0.0 1.4 1 0 0 1 1 1 0 NmrA-like family DXP_reductoisom PF02670.11 gi|284166751|ref|YP_003405030.1| - 0.2 12.2 0.5 21 5.6 0.0 2.5 2 1 0 2 2 2 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase Cep57_CLD_2 PF14197.1 gi|284166752|ref|YP_003405031.1| - 0.052 13.5 2.9 0.34 10.8 1.1 2.2 1 1 1 2 2 2 0 Centrosome localisation domain of PPC89 DUF4404 PF14357.1 gi|284166752|ref|YP_003405031.1| - 0.23 11.9 3.3 0.31 11.4 2.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4404) Bac_luciferase PF00296.15 gi|284166753|ref|YP_003405032.1| - 8.7e-33 113.7 6.4 1.1e-32 113.4 4.5 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase GDPD PF03009.12 gi|284166754|ref|YP_003405033.1| - 2.7e-23 82.7 0.0 7e-23 81.4 0.0 1.7 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.1 gi|284166754|ref|YP_003405033.1| - 0.0033 17.5 0.5 0.0033 17.5 0.3 1.8 2 0 0 2 2 2 1 Glycerophosphoryl diester phosphodiesterase family NMO PF03060.10 gi|284166754|ref|YP_003405033.1| - 0.024 13.7 0.0 0.035 13.2 0.0 1.2 1 0 0 1 1 1 0 Nitronate monooxygenase HAD_2 PF13419.1 gi|284166755|ref|YP_003405034.1| - 1.5e-12 48.1 1.2 2.2e-10 41.0 0.8 2.5 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|284166755|ref|YP_003405034.1| - 1.2e-07 31.3 0.2 1.2e-06 28.1 0.1 2.6 2 1 0 2 2 2 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|284166755|ref|YP_003405034.1| - 2e-07 31.6 0.1 1.8e-06 28.4 0.1 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase DUF3267 PF11667.3 gi|284166756|ref|YP_003405035.1| - 0.45 10.7 0.0 0.45 10.7 0.0 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF3267) Peptidase_M50 PF02163.17 gi|284166756|ref|YP_003405035.1| - 1.2 8.0 12.2 0.69 8.8 4.4 3.0 1 1 1 2 2 2 0 Peptidase family M50 UPF0146 PF03686.8 gi|284166757|ref|YP_003405036.1| - 9.7e-31 106.2 0.0 1.2e-30 105.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) Peptidase_M54 PF07998.6 gi|284166758|ref|YP_003405037.1| - 3.2e-22 79.2 0.0 4e-22 78.9 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M54 Reprolysin_2 PF13574.1 gi|284166758|ref|YP_003405037.1| - 7.4e-05 22.8 0.0 8.5e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M10 PF00413.19 gi|284166758|ref|YP_003405037.1| - 0.00025 20.8 0.0 0.00027 20.6 0.0 1.3 1 1 0 1 1 1 1 Matrixin Reprolysin_4 PF13583.1 gi|284166758|ref|YP_003405037.1| - 0.00041 19.9 0.0 0.00047 19.7 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_3 PF13582.1 gi|284166758|ref|YP_003405037.1| - 0.00045 20.7 0.1 0.00059 20.3 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.1 gi|284166758|ref|YP_003405037.1| - 0.00065 19.6 0.0 0.00077 19.4 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12 Peptidase_M66 PF10462.4 gi|284166758|ref|YP_003405037.1| - 0.003 16.4 0.0 0.0041 16.0 0.0 1.2 1 0 0 1 1 1 1 Peptidase M66 DUF1025 PF06262.6 gi|284166758|ref|YP_003405037.1| - 0.0083 15.8 0.0 0.014 15.1 0.0 1.4 1 0 0 1 1 1 1 Possibl zinc metallo-peptidase ABC_tran PF00005.22 gi|284166759|ref|YP_003405038.1| - 7.6e-42 142.8 0.0 7.2e-22 78.1 0.0 2.5 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|284166759|ref|YP_003405038.1| - 1.9e-16 60.9 0.7 0.00031 20.7 0.0 4.2 2 2 1 3 3 3 3 AAA domain SMC_N PF02463.14 gi|284166759|ref|YP_003405038.1| - 7e-13 48.3 9.8 0.00019 20.7 0.1 4.7 4 1 0 4 4 4 2 RecF/RecN/SMC N terminal domain RLI PF04068.10 gi|284166759|ref|YP_003405038.1| - 1.5e-12 46.8 1.5 2.9e-12 45.9 1.1 1.5 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_17 PF13207.1 gi|284166759|ref|YP_003405038.1| - 7.1e-08 33.2 0.7 0.0025 18.5 0.0 3.0 2 2 1 3 3 2 2 AAA domain AAA_22 PF13401.1 gi|284166759|ref|YP_003405038.1| - 5.7e-07 29.7 0.4 0.0063 16.6 0.0 3.1 2 2 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|284166759|ref|YP_003405038.1| - 3e-06 27.7 0.1 0.027 14.7 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA PF00004.24 gi|284166759|ref|YP_003405038.1| - 1.6e-05 25.0 0.0 0.045 13.9 0.0 2.8 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|284166759|ref|YP_003405038.1| - 3e-05 23.5 1.1 0.44 9.9 0.2 3.7 3 1 0 3 3 3 2 AAA domain AAA_16 PF13191.1 gi|284166759|ref|YP_003405038.1| - 6.4e-05 23.0 2.9 0.16 11.9 0.1 2.8 2 2 0 2 2 2 2 AAA ATPase domain RNA_helicase PF00910.17 gi|284166759|ref|YP_003405038.1| - 8.5e-05 22.6 0.0 0.5 10.5 0.0 2.7 2 0 0 2 2 2 2 RNA helicase DUF258 PF03193.11 gi|284166759|ref|YP_003405038.1| - 0.00015 20.9 0.0 0.34 10.0 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|284166759|ref|YP_003405038.1| - 0.00024 20.5 0.2 0.93 9.0 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|284166759|ref|YP_003405038.1| - 0.00031 20.6 0.1 1.2 9.0 0.0 3.6 3 1 0 3 3 3 1 AAA domain AAA_18 PF13238.1 gi|284166759|ref|YP_003405038.1| - 0.00041 20.6 0.0 1.3 9.2 0.0 2.7 2 1 0 2 2 2 2 AAA domain Fer4 PF00037.22 gi|284166759|ref|YP_003405038.1| - 0.00067 19.1 2.3 0.00067 19.1 1.6 2.7 3 0 0 3 3 3 1 4Fe-4S binding domain NACHT PF05729.7 gi|284166759|ref|YP_003405038.1| - 0.00079 19.1 0.0 1.2 8.7 0.0 2.7 2 0 0 2 2 2 2 NACHT domain AAA_33 PF13671.1 gi|284166759|ref|YP_003405038.1| - 0.00087 19.1 0.8 1.6 8.6 1.1 3.3 2 1 0 2 2 2 1 AAA domain Rad17 PF03215.10 gi|284166759|ref|YP_003405038.1| - 0.00095 17.9 0.0 0.41 9.2 0.0 2.8 2 1 1 3 3 3 1 Rad17 cell cycle checkpoint protein SbcCD_C PF13558.1 gi|284166759|ref|YP_003405038.1| - 0.0017 18.2 0.4 0.21 11.4 0.0 2.9 2 2 0 2 2 2 1 Putative exonuclease SbcCD, C subunit Fer4_6 PF12837.2 gi|284166759|ref|YP_003405038.1| - 0.0039 17.0 1.9 0.0039 17.0 1.3 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_10 PF12846.2 gi|284166759|ref|YP_003405038.1| - 0.0041 16.6 0.1 1.2 8.4 0.0 3.0 2 1 0 2 2 2 1 AAA-like domain NB-ARC PF00931.17 gi|284166759|ref|YP_003405038.1| - 0.0053 15.6 0.0 1 8.1 0.1 2.4 2 0 0 2 2 2 1 NB-ARC domain MobB PF03205.9 gi|284166759|ref|YP_003405038.1| - 0.006 16.2 0.1 2.8 7.6 0.0 2.6 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_24 PF13479.1 gi|284166759|ref|YP_003405038.1| - 0.006 16.1 0.2 2.5 7.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|284166759|ref|YP_003405038.1| - 0.013 14.5 0.3 1.8 7.5 0.0 2.8 3 0 0 3 3 2 0 Holliday junction DNA helicase ruvB N-terminus AAA_15 PF13175.1 gi|284166759|ref|YP_003405038.1| - 0.027 13.5 0.0 0.78 8.7 0.0 2.8 2 1 0 3 3 3 0 AAA ATPase domain Fer4_7 PF12838.2 gi|284166759|ref|YP_003405038.1| - 0.033 14.5 11.0 0.075 13.4 7.6 1.7 1 0 0 1 1 1 0 4Fe-4S dicluster domain AAA_5 PF07728.9 gi|284166759|ref|YP_003405038.1| - 0.044 13.5 0.1 9.1 6.0 0.0 2.9 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) DUF87 PF01935.12 gi|284166759|ref|YP_003405038.1| - 0.045 13.5 0.2 15 5.2 0.0 3.2 3 1 0 3 3 3 0 Domain of unknown function DUF87 AAA_28 PF13521.1 gi|284166759|ref|YP_003405038.1| - 0.049 13.5 0.2 4.7 7.1 0.0 3.1 3 0 0 3 3 3 0 AAA domain Miro PF08477.8 gi|284166759|ref|YP_003405038.1| - 0.053 14.0 0.0 22 5.5 0.0 3.0 3 0 0 3 3 3 0 Miro-like protein VirE PF05272.6 gi|284166759|ref|YP_003405038.1| - 0.055 12.9 0.0 7.3 6.0 0.0 2.6 3 0 0 3 3 2 0 Virulence-associated protein E NTPase_1 PF03266.10 gi|284166759|ref|YP_003405038.1| - 0.088 12.5 2.6 11 5.6 0.0 3.1 4 0 0 4 4 3 0 NTPase MMR_HSR1 PF01926.18 gi|284166759|ref|YP_003405038.1| - 0.094 12.6 0.0 0.63 10.0 0.0 2.3 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_13 PF13166.1 gi|284166759|ref|YP_003405038.1| - 0.11 10.9 0.0 6.3 5.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain Fer4_9 PF13187.1 gi|284166759|ref|YP_003405038.1| - 0.11 12.7 12.1 0.21 11.8 8.4 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain SRP54 PF00448.17 gi|284166759|ref|YP_003405038.1| - 0.16 11.3 1.7 4.6 6.6 0.1 2.6 3 0 0 3 3 2 0 SRP54-type protein, GTPase domain ArgK PF03308.11 gi|284166759|ref|YP_003405038.1| - 0.17 10.6 0.5 4 6.1 0.0 2.2 2 0 0 2 2 2 0 ArgK protein Fer4_21 PF14697.1 gi|284166759|ref|YP_003405038.1| - 0.53 10.1 9.1 1 9.2 6.3 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|284166759|ref|YP_003405038.1| - 0.69 9.9 12.0 0.17 11.8 1.3 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|284166759|ref|YP_003405038.1| - 4.7 8.0 10.6 0.13 13.0 0.9 2.1 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|284166759|ref|YP_003405038.1| - 8.4 6.2 13.2 24 4.8 9.3 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Ribosomal_L28e PF01778.12 gi|284166761|ref|YP_003405040.1| - 0.025 14.9 0.1 0.53 10.6 0.0 2.2 2 0 0 2 2 2 0 Ribosomal L28e protein family PGPGW PF09656.5 gi|284166761|ref|YP_003405040.1| - 0.047 12.9 0.2 0.08 12.2 0.1 1.3 1 0 0 1 1 1 0 Putative transmembrane protein (PGPGW) DUF4097 PF13349.1 gi|284166761|ref|YP_003405040.1| - 0.18 11.3 12.4 0.017 14.7 3.9 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4097) LCAT PF02450.10 gi|284166761|ref|YP_003405040.1| - 0.33 9.8 3.2 0.36 9.7 1.7 1.4 1 1 0 1 1 1 0 Lecithin:cholesterol acyltransferase VWA_2 PF13519.1 gi|284166763|ref|YP_003405042.1| - 4.5e-20 72.4 0.0 7.8e-19 68.4 0.0 2.9 3 1 0 3 3 3 1 von Willebrand factor type A domain VWA PF00092.23 gi|284166763|ref|YP_003405042.1| - 4.6e-18 65.5 0.0 2.2e-14 53.5 0.0 2.7 2 0 0 2 2 2 2 von Willebrand factor type A domain VWA_3 PF13768.1 gi|284166763|ref|YP_003405042.1| - 4.6e-08 32.9 0.0 1.8e-07 30.9 0.0 1.9 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|284166763|ref|YP_003405042.1| - 5.9e-05 22.3 0.4 0.007 15.5 0.1 2.3 2 0 0 2 2 2 2 VWA domain containing CoxE-like protein CAF1A PF12253.3 gi|284166763|ref|YP_003405042.1| - 0.0059 16.7 0.9 0.029 14.4 0.6 2.3 1 0 0 1 1 1 1 Chromatin assembly factor 1 subunit A CARDB PF07705.6 gi|284166764|ref|YP_003405043.1| - 4.6e-12 45.8 11.2 2.3e-06 27.5 0.2 3.3 3 0 0 3 3 3 3 CARDB FixG_C PF11614.3 gi|284166764|ref|YP_003405043.1| - 0.00015 21.8 4.5 0.85 9.7 0.1 3.8 2 1 0 3 3 3 2 IG-like fold at C-terminal of FixG, putative oxidoreductase Cu2_monoox_C PF03712.10 gi|284166764|ref|YP_003405043.1| - 0.12 11.7 0.0 0.19 11.0 0.0 1.3 1 0 0 1 1 1 0 Copper type II ascorbate-dependent monooxygenase, C-terminal domain Peptidase_S24 PF00717.18 gi|284166765|ref|YP_003405044.1| - 7.5e-06 25.5 0.0 1.6e-05 24.4 0.0 1.5 1 0 0 1 1 1 1 Peptidase S24-like VirB8 PF04335.8 gi|284166765|ref|YP_003405044.1| - 0.0013 18.3 0.1 0.0035 16.9 0.1 1.7 1 0 0 1 1 1 1 VirB8 protein Herpes_UL45 PF05473.7 gi|284166765|ref|YP_003405044.1| - 0.18 11.2 0.1 0.39 10.1 0.1 1.5 1 0 0 1 1 1 0 UL45 protein DUF4131 PF13567.1 gi|284166766|ref|YP_003405045.1| - 0.15 11.4 0.0 0.51 9.7 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) HTH_24 PF13412.1 gi|284166767|ref|YP_003405046.1| - 7.9e-05 21.9 0.0 0.00012 21.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GntR PF00392.16 gi|284166767|ref|YP_003405046.1| - 0.00088 18.6 0.1 0.0016 17.8 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TrmB PF01978.14 gi|284166767|ref|YP_003405046.1| - 0.00099 18.7 0.1 0.0013 18.3 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|284166767|ref|YP_003405046.1| - 0.0012 18.4 0.0 0.0018 17.8 0.0 1.3 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|284166767|ref|YP_003405046.1| - 0.0018 17.8 0.0 0.0021 17.6 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|284166767|ref|YP_003405046.1| - 0.0021 17.7 0.0 0.0027 17.3 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|284166767|ref|YP_003405046.1| - 0.0026 18.0 0.0 0.0037 17.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.12 gi|284166767|ref|YP_003405046.1| - 0.0036 16.7 0.0 0.0044 16.4 0.0 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit PaaX PF07848.7 gi|284166767|ref|YP_003405046.1| - 0.023 14.6 0.0 0.034 14.1 0.0 1.2 1 0 0 1 1 1 0 PaaX-like protein DUF2540 PF10802.3 gi|284166767|ref|YP_003405046.1| - 0.029 14.0 0.0 0.048 13.3 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2540) HTH_5 PF01022.15 gi|284166767|ref|YP_003405046.1| - 0.037 13.6 0.0 0.052 13.2 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_12 PF08461.5 gi|284166767|ref|YP_003405046.1| - 0.038 13.7 0.1 0.11 12.2 0.1 1.7 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_IclR PF09339.5 gi|284166767|ref|YP_003405046.1| - 0.067 12.7 0.0 0.14 11.7 0.0 1.5 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_28 PF13518.1 gi|284166767|ref|YP_003405046.1| - 0.088 12.8 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_20 PF12840.2 gi|284166767|ref|YP_003405046.1| - 0.097 12.4 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|284166767|ref|YP_003405046.1| - 0.12 12.2 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_36 PF13730.1 gi|284166767|ref|YP_003405046.1| - 0.12 12.5 0.0 0.25 11.5 0.0 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|284166767|ref|YP_003405046.1| - 0.13 12.4 0.0 0.15 12.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix DUF998 PF06197.8 gi|284166768|ref|YP_003405047.1| - 0.0093 15.2 7.8 0.013 14.7 5.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF998) PhaG_MnhG_YufB PF03334.9 gi|284166768|ref|YP_003405047.1| - 0.026 14.5 0.8 0.05 13.6 0.1 2.0 2 1 0 2 2 2 0 Na+/H+ antiporter subunit YqzM PF14141.1 gi|284166768|ref|YP_003405047.1| - 0.18 11.5 0.6 0.67 9.7 0.0 2.1 2 0 0 2 2 2 0 YqzM-like protein FixH PF05751.6 gi|284166768|ref|YP_003405047.1| - 0.4 10.4 1.7 0.76 9.5 1.2 1.4 1 0 0 1 1 1 0 FixH NAD_synthase PF02540.12 gi|284166769|ref|YP_003405048.1| - 1.1e-75 253.7 0.0 1.3e-75 253.4 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|284166769|ref|YP_003405048.1| - 4.1e-07 28.8 0.0 0.0017 16.9 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase QueC PF06508.8 gi|284166769|ref|YP_003405048.1| - 0.00011 21.6 0.0 0.00061 19.1 0.0 1.9 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|284166769|ref|YP_003405048.1| - 0.0018 17.8 0.1 0.0028 17.1 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase T2SE PF00437.15 gi|284166770|ref|YP_003405049.1| - 2.8e-13 49.4 0.0 4.5e-13 48.7 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein KH_1 PF00013.24 gi|284166770|ref|YP_003405049.1| - 1.5e-06 27.7 0.3 5.5e-06 25.9 0.2 2.0 1 0 0 1 1 1 1 KH domain AAA_17 PF13207.1 gi|284166770|ref|YP_003405049.1| - 0.00011 23.0 0.1 0.00068 20.4 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|284166770|ref|YP_003405049.1| - 0.00021 21.2 0.0 0.0061 16.4 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|284166770|ref|YP_003405049.1| - 0.00078 19.1 0.1 0.0062 16.2 0.0 2.3 2 0 0 2 2 2 1 Part of AAA domain AAA_25 PF13481.1 gi|284166770|ref|YP_003405049.1| - 0.0024 17.2 0.1 0.008 15.6 0.0 1.9 1 1 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.12 gi|284166770|ref|YP_003405049.1| - 0.0024 17.2 0.0 0.005 16.2 0.0 1.5 1 0 0 1 1 1 1 Thymidylate kinase AAA_16 PF13191.1 gi|284166770|ref|YP_003405049.1| - 0.0025 17.8 0.0 0.0069 16.3 0.0 1.7 2 0 0 2 2 1 1 AAA ATPase domain KH_2 PF07650.12 gi|284166770|ref|YP_003405049.1| - 0.003 17.0 1.7 0.0083 15.6 1.2 1.8 1 0 0 1 1 1 1 KH domain AAA_30 PF13604.1 gi|284166770|ref|YP_003405049.1| - 0.003 17.1 0.1 0.024 14.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|284166770|ref|YP_003405049.1| - 0.0037 16.3 0.0 0.0066 15.5 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_29 PF13555.1 gi|284166770|ref|YP_003405049.1| - 0.0042 16.5 0.0 0.012 15.1 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|284166770|ref|YP_003405049.1| - 0.0075 16.5 0.1 0.035 14.4 0.0 2.3 2 0 0 2 2 1 1 AAA domain NTPase_1 PF03266.10 gi|284166770|ref|YP_003405049.1| - 0.011 15.4 0.0 0.031 13.9 0.0 1.7 1 0 0 1 1 1 0 NTPase AAA_5 PF07728.9 gi|284166770|ref|YP_003405049.1| - 0.017 14.8 0.0 0.037 13.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|284166770|ref|YP_003405049.1| - 0.019 15.1 0.0 0.05 13.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|284166770|ref|YP_003405049.1| - 0.022 14.2 0.0 0.038 13.4 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein KH_3 PF13014.1 gi|284166770|ref|YP_003405049.1| - 0.025 14.2 0.5 0.1 12.2 0.2 2.2 2 0 0 2 2 2 0 KH domain KaiC PF06745.8 gi|284166770|ref|YP_003405049.1| - 0.026 13.6 0.0 0.065 12.3 0.0 1.6 1 0 0 1 1 1 0 KaiC AAA_28 PF13521.1 gi|284166770|ref|YP_003405049.1| - 0.029 14.3 0.0 0.12 12.3 0.0 2.1 2 0 0 2 2 1 0 AAA domain Viral_helicase1 PF01443.13 gi|284166770|ref|YP_003405049.1| - 0.03 13.8 0.0 0.11 12.0 0.0 1.8 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_14 PF13173.1 gi|284166770|ref|YP_003405049.1| - 0.038 13.8 0.0 0.076 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain KH_5 PF13184.1 gi|284166770|ref|YP_003405049.1| - 0.039 13.7 0.2 0.11 12.2 0.2 1.8 1 0 0 1 1 1 0 NusA-like KH domain AAA PF00004.24 gi|284166770|ref|YP_003405049.1| - 0.049 13.8 0.0 0.1 12.7 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) KTI12 PF08433.5 gi|284166770|ref|YP_003405049.1| - 0.053 12.7 0.0 0.12 11.6 0.0 1.5 1 0 0 1 1 1 0 Chromatin associated protein KTI12 NACHT PF05729.7 gi|284166770|ref|YP_003405049.1| - 0.063 12.9 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 NACHT domain ABC_tran PF00005.22 gi|284166770|ref|YP_003405049.1| - 0.087 13.1 0.0 0.23 11.7 0.0 1.7 1 0 0 1 1 1 0 ABC transporter Sigma54_activat PF00158.21 gi|284166770|ref|YP_003405049.1| - 0.093 12.2 0.0 0.2 11.1 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain FtsK_SpoIIIE PF01580.13 gi|284166770|ref|YP_003405049.1| - 0.093 12.1 0.0 0.22 11.0 0.0 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family Sigma54_activ_2 PF14532.1 gi|284166770|ref|YP_003405049.1| - 0.11 12.4 0.0 0.36 10.8 0.0 1.8 2 0 0 2 2 1 0 Sigma-54 interaction domain PIN_4 PF13638.1 gi|284166770|ref|YP_003405049.1| - 0.12 12.4 0.0 0.38 10.8 0.0 1.9 1 1 0 1 1 1 0 PIN domain RNA_helicase PF00910.17 gi|284166770|ref|YP_003405049.1| - 0.12 12.5 0.0 0.23 11.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase NB-ARC PF00931.17 gi|284166770|ref|YP_003405049.1| - 0.17 10.7 0.0 0.29 9.9 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain Peptidase_M20 PF01546.23 gi|284166771|ref|YP_003405050.1| - 4.6e-23 81.7 13.6 8.8e-23 80.7 9.4 1.5 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|284166771|ref|YP_003405050.1| - 4.7e-17 61.7 0.1 1e-16 60.6 0.1 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain RtxA PF07634.6 gi|284166771|ref|YP_003405050.1| - 0.039 14.2 2.1 0.11 12.7 0.4 2.5 2 0 0 2 2 2 0 RtxA repeat Glycos_transf_1 PF00534.15 gi|284166772|ref|YP_003405051.1| - 9.6e-26 90.2 0.0 1.6e-25 89.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|284166772|ref|YP_003405051.1| - 9.3e-20 71.1 0.0 3e-19 69.5 0.0 1.8 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|284166772|ref|YP_003405051.1| - 2e-10 41.0 0.0 8.5e-10 38.9 0.0 2.0 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|284166772|ref|YP_003405051.1| - 3.2e-07 30.2 0.0 9.4e-07 28.7 0.0 1.7 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|284166772|ref|YP_003405051.1| - 5.8e-07 29.4 0.0 1.7e-06 27.8 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|284166772|ref|YP_003405051.1| - 1.6e-06 28.2 0.0 4.3e-06 26.9 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|284166773|ref|YP_003405052.1| - 7.1e-18 64.5 0.0 3e-17 62.5 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|284166773|ref|YP_003405052.1| - 2.4e-13 50.3 0.0 1.4e-12 47.9 0.0 2.1 2 1 1 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|284166773|ref|YP_003405052.1| - 1.5e-07 31.7 0.3 2.5e-07 30.9 0.2 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|284166773|ref|YP_003405052.1| - 4.3e-05 23.3 0.0 6.3e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|284166773|ref|YP_003405052.1| - 0.00011 22.4 0.0 0.00035 20.7 0.0 1.9 1 1 1 2 2 2 1 Glycosyl transferases group 1 Sulfatase PF00884.18 gi|284166774|ref|YP_003405053.1| - 0.14 11.3 0.1 0.19 10.8 0.0 1.3 1 1 0 1 1 1 0 Sulfatase Sulfatase PF00884.18 gi|284166775|ref|YP_003405054.1| - 2.8e-47 161.4 0.0 3.8e-47 160.9 0.0 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|284166775|ref|YP_003405054.1| - 4.4e-14 52.5 0.4 8.4e-07 28.6 0.0 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF1501 PF07394.7 gi|284166775|ref|YP_003405054.1| - 0.1 11.4 0.6 0.17 10.7 0.1 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1501) UPF0104 PF03706.8 gi|284166776|ref|YP_003405055.1| - 1.5e-34 119.6 40.0 1.9e-34 119.3 27.7 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) DUF457 PF04307.9 gi|284166777|ref|YP_003405056.1| - 4.4e-20 71.6 8.3 5.4e-20 71.3 5.8 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF457 PF04307.9 gi|284166778|ref|YP_003405057.1| - 3.8e-17 62.0 12.4 5.2e-17 61.6 8.6 1.2 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) SNARE_assoc PF09335.6 gi|284166779|ref|YP_003405058.1| - 6.4e-13 48.9 4.7 6.4e-13 48.9 3.3 1.5 2 0 0 2 2 2 1 SNARE associated Golgi protein PMT_2 PF13231.1 gi|284166780|ref|YP_003405059.1| - 4.5e-21 75.4 9.5 4.5e-21 75.4 6.6 2.7 3 0 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.13 gi|284166780|ref|YP_003405059.1| - 5.6e-08 32.4 7.5 5.6e-08 32.4 5.2 1.9 2 0 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase STT3 PF02516.9 gi|284166780|ref|YP_003405059.1| - 6.4e-05 22.1 1.6 6.4e-05 22.1 1.1 2.1 3 0 0 3 3 3 1 Oligosaccharyl transferase STT3 subunit DUF2723 PF11028.3 gi|284166780|ref|YP_003405059.1| - 8.4e-05 22.1 2.6 0.00032 20.2 1.8 2.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2723) NapE PF06796.6 gi|284166781|ref|YP_003405060.1| - 0.2 10.9 0.2 0.2 10.9 0.1 2.7 3 0 0 3 3 3 0 Periplasmic nitrate reductase protein NapE VirB8 PF04335.8 gi|284166781|ref|YP_003405060.1| - 1.3 8.5 6.8 2 7.9 0.0 3.3 3 0 0 3 3 3 0 VirB8 protein Epimerase PF01370.16 gi|284166782|ref|YP_003405061.1| - 3.9e-43 147.5 0.0 4.9e-43 147.2 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|284166782|ref|YP_003405061.1| - 2.8e-20 72.1 0.0 3.7e-20 71.7 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|284166782|ref|YP_003405061.1| - 1.8e-15 57.3 0.0 2.4e-15 57.0 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_4 PF07993.7 gi|284166782|ref|YP_003405061.1| - 6.6e-13 48.1 1.4 1.2e-10 40.7 0.0 2.2 1 1 1 2 2 2 2 Male sterility protein RmlD_sub_bind PF04321.12 gi|284166782|ref|YP_003405061.1| - 1.8e-12 46.7 0.0 2.2e-12 46.4 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|284166782|ref|YP_003405061.1| - 5.5e-06 25.4 0.2 3.7e-05 22.7 0.1 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein adh_short PF00106.20 gi|284166782|ref|YP_003405061.1| - 5.7e-06 26.3 0.6 2.5e-05 24.2 0.4 2.0 1 1 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.8 gi|284166782|ref|YP_003405061.1| - 0.0065 15.7 0.0 0.011 15.0 0.0 1.4 1 0 0 1 1 1 1 NmrA-like family KR PF08659.5 gi|284166782|ref|YP_003405061.1| - 0.01 15.4 2.0 0.3 10.7 1.4 2.5 1 1 0 1 1 1 0 KR domain UbiA PF01040.13 gi|284166783|ref|YP_003405062.1| - 8.3e-24 84.1 25.1 8.8e-24 84.1 16.3 1.6 1 1 0 1 1 1 1 UbiA prenyltransferase family DUF2417 PF10329.4 gi|284166783|ref|YP_003405062.1| - 0.0028 17.0 2.3 0.0052 16.2 1.6 1.4 1 0 0 1 1 1 1 Region of unknown function (DUF2417) ABC2_membrane_2 PF12679.2 gi|284166783|ref|YP_003405062.1| - 0.55 9.0 7.7 0.96 8.2 5.4 1.5 1 0 0 1 1 1 0 ABC-2 family transporter protein Gemini_mov PF01708.11 gi|284166783|ref|YP_003405062.1| - 1.5 8.4 4.2 1.6 8.2 0.0 2.8 2 1 0 2 2 2 0 Geminivirus putative movement protein PHP_C PF13263.1 gi|284166784|ref|YP_003405063.1| - 1e-16 60.1 0.6 2.2e-16 59.1 0.4 1.6 1 0 0 1 1 1 1 PHP-associated PHP PF02811.14 gi|284166784|ref|YP_003405063.1| - 2.1e-14 53.6 0.0 3.5e-13 49.7 0.0 2.1 1 1 0 1 1 1 1 PHP domain UPF0104 PF03706.8 gi|284166785|ref|YP_003405064.1| - 1.4e-39 136.1 32.5 1.8e-39 135.8 22.5 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) TMEMspv1-c74-12 PF11044.3 gi|284166785|ref|YP_003405064.1| - 0.67 9.5 11.3 0.15 11.6 0.3 3.3 2 1 1 3 3 3 0 Plectrovirus spv1-c74 ORF 12 transmembrane protein Arylsulfotrans PF05935.6 gi|284166786|ref|YP_003405065.1| - 4.7e-09 35.2 3.7 1.5e-07 30.3 1.2 2.8 1 1 2 3 3 3 3 Arylsulfotransferase (ASST) Arylsulfotran_2 PF14269.1 gi|284166786|ref|YP_003405065.1| - 3.7e-06 26.3 2.1 0.00022 20.4 0.8 2.7 2 1 0 2 2 2 1 Arylsulfotransferase (ASST) NHL PF01436.16 gi|284166786|ref|YP_003405065.1| - 0.048 13.6 3.6 0.51 10.3 0.0 3.5 4 0 0 4 4 4 0 NHL repeat MSC PF09402.5 gi|284166786|ref|YP_003405065.1| - 0.34 9.5 1.4 0.55 8.8 0.9 1.2 1 0 0 1 1 1 0 Man1-Src1p-C-terminal domain Usp PF00582.21 gi|284166789|ref|YP_003405068.1| - 2e-60 203.0 13.0 1.6e-31 109.3 0.3 3.0 2 1 0 2 2 2 2 Universal stress protein family Acetyltransf_10 PF13673.1 gi|284166789|ref|YP_003405068.1| - 0.013 15.6 0.0 0.39 10.8 0.0 2.4 2 1 0 2 2 2 0 Acetyltransferase (GNAT) domain Dala_Dala_lig_N PF01820.16 gi|284166789|ref|YP_003405068.1| - 0.022 15.0 0.0 5.3 7.3 0.0 2.2 2 0 0 2 2 2 0 D-ala D-ala ligase N-terminus FR47 PF08445.5 gi|284166789|ref|YP_003405068.1| - 0.057 13.1 0.3 0.49 10.1 0.0 2.6 3 1 0 3 3 3 0 FR47-like protein Acetyltransf_1 PF00583.19 gi|284166789|ref|YP_003405068.1| - 0.093 12.7 1.1 35 4.5 0.0 3.5 2 1 2 4 4 4 0 Acetyltransferase (GNAT) family Oxidored_q1_N PF00662.15 gi|284166790|ref|YP_003405069.1| - 0.031 13.8 0.4 0.031 13.8 0.2 2.0 2 0 0 2 2 2 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Yip1 PF04893.12 gi|284166790|ref|YP_003405069.1| - 0.064 12.7 24.2 0.089 12.2 16.8 1.2 1 0 0 1 1 1 0 Yip1 domain Peptidase_M32 PF02074.10 gi|284166791|ref|YP_003405070.1| - 1.9e-151 505.0 0.7 2.5e-151 504.6 0.5 1.1 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase TPR_MLP1_2 PF07926.7 gi|284166791|ref|YP_003405070.1| - 0.082 12.6 0.2 0.18 11.5 0.2 1.6 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein DUF998 PF06197.8 gi|284166792|ref|YP_003405071.1| - 0.1 11.9 6.9 0.11 11.7 4.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF998) DUF543 PF04418.7 gi|284166792|ref|YP_003405071.1| - 1.9 8.4 5.6 0.51 10.3 1.5 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF543) adh_short PF00106.20 gi|284166794|ref|YP_003405073.1| - 1.1e-35 122.9 2.2 1.1e-35 122.9 1.5 1.3 2 0 0 2 2 2 1 short chain dehydrogenase KR PF08659.5 gi|284166794|ref|YP_003405073.1| - 7.3e-14 51.8 0.6 1.1e-13 51.2 0.4 1.1 1 0 0 1 1 1 1 KR domain adh_short_C2 PF13561.1 gi|284166794|ref|YP_003405073.1| - 9.3e-13 48.5 0.0 1.3e-12 47.9 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Epimerase PF01370.16 gi|284166794|ref|YP_003405073.1| - 0.00088 18.7 1.0 0.0019 17.6 0.4 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Eno-Rase_NADH_b PF12242.3 gi|284166794|ref|YP_003405073.1| - 0.0021 17.7 1.1 0.0051 16.5 0.8 1.6 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Polysacc_synt_2 PF02719.10 gi|284166794|ref|YP_003405073.1| - 0.0042 16.0 0.0 0.0057 15.5 0.0 1.3 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|284166794|ref|YP_003405073.1| - 0.0047 16.9 4.3 0.015 15.2 3.0 1.8 1 1 0 1 1 1 1 NADH(P)-binding HEM4 PF02602.10 gi|284166794|ref|YP_003405073.1| - 0.019 14.2 0.1 0.031 13.5 0.1 1.4 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD F420_oxidored PF03807.12 gi|284166794|ref|YP_003405073.1| - 0.022 15.1 0.1 0.054 13.9 0.1 1.7 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.15 gi|284166794|ref|YP_003405073.1| - 0.03 14.4 0.1 0.082 13.0 0.0 1.8 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase IlvN PF07991.7 gi|284166794|ref|YP_003405073.1| - 0.033 13.5 0.2 0.83 9.0 0.0 2.1 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, catalytic domain 3HCDH_N PF02737.13 gi|284166794|ref|YP_003405073.1| - 0.06 12.9 0.2 0.1 12.2 0.2 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ADH_zinc_N PF00107.21 gi|284166794|ref|YP_003405073.1| - 0.1 12.1 1.5 0.43 10.1 1.1 2.0 2 1 0 2 2 2 0 Zinc-binding dehydrogenase Thioredoxin PF00085.15 gi|284166796|ref|YP_003405075.1| - 2.7e-21 75.2 0.0 3.1e-21 75.0 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.1 gi|284166796|ref|YP_003405075.1| - 1e-07 31.9 0.0 7.8e-05 22.7 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|284166796|ref|YP_003405075.1| - 2e-07 31.2 0.0 1.1e-06 28.8 0.0 1.8 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.1 gi|284166796|ref|YP_003405075.1| - 7.6e-05 22.4 0.0 8.8e-05 22.2 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_9 PF14595.1 gi|284166796|ref|YP_003405075.1| - 0.00011 21.7 0.0 0.00013 21.5 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Redoxin PF08534.5 gi|284166796|ref|YP_003405075.1| - 0.00042 19.8 0.3 0.079 12.5 0.0 2.0 1 1 1 2 2 2 2 Redoxin AhpC-TSA PF00578.16 gi|284166796|ref|YP_003405075.1| - 0.00053 19.6 0.2 0.46 10.1 0.0 2.0 1 1 1 2 2 2 2 AhpC/TSA family DUF836 PF05768.9 gi|284166796|ref|YP_003405075.1| - 0.0012 19.0 0.1 0.0014 18.8 0.1 1.2 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) KaiB PF07689.7 gi|284166796|ref|YP_003405075.1| - 0.0028 17.0 0.0 0.0031 16.9 0.0 1.1 1 0 0 1 1 1 1 KaiB domain DSBA PF01323.15 gi|284166796|ref|YP_003405075.1| - 0.0075 15.8 0.2 0.13 11.8 0.0 1.9 1 1 1 2 2 2 1 DSBA-like thioredoxin domain Thioredoxin_5 PF13743.1 gi|284166796|ref|YP_003405075.1| - 0.0077 15.8 0.1 0.0088 15.6 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_7 PF13899.1 gi|284166796|ref|YP_003405075.1| - 0.015 15.3 0.0 0.029 14.4 0.0 1.5 1 0 0 1 1 1 0 Thioredoxin-like TraF PF13728.1 gi|284166796|ref|YP_003405075.1| - 0.03 13.8 0.0 0.035 13.6 0.0 1.2 1 0 0 1 1 1 0 F plasmid transfer operon protein Glutaredoxin PF00462.19 gi|284166796|ref|YP_003405075.1| - 0.062 13.2 0.1 0.11 12.4 0.0 1.5 1 1 0 1 1 1 0 Glutaredoxin HyaE PF07449.6 gi|284166796|ref|YP_003405075.1| - 0.068 13.0 0.0 0.079 12.8 0.0 1.1 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE DUF4371 PF14291.1 gi|284166796|ref|YP_003405075.1| - 0.12 11.8 0.0 0.13 11.7 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4371) Sec61_beta PF03911.11 gi|284166797|ref|YP_003405076.1| - 9.4e-09 34.9 0.1 1.2e-08 34.5 0.1 1.2 1 0 0 1 1 1 1 Sec61beta family GNVR PF13807.1 gi|284166797|ref|YP_003405076.1| - 0.11 12.2 0.1 0.11 12.2 0.0 1.1 1 0 0 1 1 1 0 G-rich domain on putative tyrosine kinase Glyoxalase_2 PF12681.2 gi|284166798|ref|YP_003405077.1| - 1.3e-18 67.5 0.1 6.3e-08 33.1 0.0 2.3 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase PF00903.20 gi|284166798|ref|YP_003405077.1| - 4.7e-16 58.9 0.0 4e-07 30.0 0.0 2.3 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CppA_N PF14506.1 gi|284166798|ref|YP_003405077.1| - 0.0032 17.1 0.0 0.02 14.5 0.0 1.9 2 0 0 2 2 2 1 CppA N-terminal Glyoxalase_3 PF13468.1 gi|284166798|ref|YP_003405077.1| - 0.0099 15.8 1.4 0.091 12.6 0.1 2.7 2 1 1 3 3 3 1 Glyoxalase-like domain DUF1691 PF07950.6 gi|284166798|ref|YP_003405077.1| - 0.13 12.1 0.0 0.31 10.9 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1691) SNO PF01174.14 gi|284166799|ref|YP_003405078.1| - 1.8e-48 164.6 0.0 2.1e-48 164.4 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|284166799|ref|YP_003405078.1| - 2.8e-09 36.7 0.0 6.7e-09 35.5 0.0 1.8 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.12 gi|284166799|ref|YP_003405078.1| - 0.00028 20.6 0.0 0.00044 20.0 0.0 1.3 1 0 0 1 1 1 1 Peptidase family S51 GATase PF00117.23 gi|284166799|ref|YP_003405078.1| - 0.0037 16.7 0.0 0.011 15.1 0.0 1.7 1 1 0 1 1 1 1 Glutamine amidotransferase class-I BPL_N PF09825.4 gi|284166799|ref|YP_003405078.1| - 0.0056 15.5 0.0 0.036 12.8 0.0 1.9 2 0 0 2 2 2 1 Biotin-protein ligase, N terminal DJ-1_PfpI PF01965.19 gi|284166799|ref|YP_003405078.1| - 0.014 14.8 0.1 0.026 13.9 0.0 1.4 1 0 0 1 1 1 0 DJ-1/PfpI family Methyltransf_25 PF13649.1 gi|284166800|ref|YP_003405079.1| - 1.6e-09 38.0 0.1 9.2e-09 35.5 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|284166800|ref|YP_003405079.1| - 3.5e-09 36.5 0.1 4.3e-09 36.2 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|284166800|ref|YP_003405079.1| - 6.1e-09 36.2 0.0 9.7e-09 35.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|284166800|ref|YP_003405079.1| - 5.1e-06 25.9 0.0 7.8e-06 25.3 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_26 PF13659.1 gi|284166800|ref|YP_003405079.1| - 8.8e-05 22.5 0.0 0.00014 21.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|284166800|ref|YP_003405079.1| - 0.00014 22.4 0.0 0.0002 21.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|284166800|ref|YP_003405079.1| - 0.00059 19.4 0.0 0.00068 19.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|284166800|ref|YP_003405079.1| - 0.023 15.1 0.1 0.039 14.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain CSD PF00313.17 gi|284166801|ref|YP_003405080.1| - 1.8e-19 69.2 0.4 2e-19 69.1 0.2 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.6 gi|284166801|ref|YP_003405080.1| - 0.023 14.2 3.2 0.03 13.8 2.2 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain S1-like PF14444.1 gi|284166801|ref|YP_003405080.1| - 0.031 14.0 0.4 0.048 13.3 0.3 1.4 1 1 0 1 1 1 0 S1-like DNase-RNase PF02577.9 gi|284166802|ref|YP_003405081.1| - 2.5e-34 117.3 0.0 3.2e-34 117.0 0.0 1.1 1 0 0 1 1 1 1 Bifunctional nuclease PRA-PH PF01503.12 gi|284166803|ref|YP_003405082.1| - 2.2e-14 53.5 3.6 2.4e-14 53.3 2.5 1.0 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.12 gi|284166803|ref|YP_003405082.1| - 0.0011 18.9 5.1 0.0018 18.2 3.5 1.3 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain Tetrabrachion PF11401.3 gi|284166803|ref|YP_003405082.1| - 0.072 12.8 0.2 2.4 7.9 0.0 2.3 2 0 0 2 2 2 0 Tetrabrachion DUF4129 PF13559.1 gi|284166804|ref|YP_003405083.1| - 4.4e-10 39.3 12.6 4.4e-10 39.3 8.8 4.0 3 0 0 3 3 3 1 Domain of unknown function (DUF4129) DUF4198 PF10670.4 gi|284166804|ref|YP_003405083.1| - 0.0024 17.9 7.8 0.04 13.9 0.6 3.3 3 0 0 3 3 3 2 Domain of unknown function (DUF4198) DUF2807 PF10988.3 gi|284166804|ref|YP_003405083.1| - 0.0089 15.5 0.2 1.5 8.2 0.0 2.5 2 1 0 2 2 2 2 Protein of unknown function (DUF2807) DUF4480 PF13715.1 gi|284166804|ref|YP_003405083.1| - 0.05 13.6 0.5 1.4 9.0 0.0 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF4480) DUF1469 PF07332.6 gi|284166805|ref|YP_003405084.1| - 1.5 8.5 12.7 2.8 7.6 8.8 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) DUF58 PF01882.13 gi|284166806|ref|YP_003405085.1| - 1.4e-16 60.4 0.0 5.4e-16 58.5 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function DUF58 DUF11 PF01345.13 gi|284166806|ref|YP_003405085.1| - 1.1e-07 31.7 1.6 3.7e-07 30.0 1.1 1.9 1 0 0 1 1 1 1 Domain of unknown function DUF11 NPCBM_assoc PF10633.4 gi|284166806|ref|YP_003405085.1| - 0.0024 17.8 0.4 0.018 15.0 0.0 2.5 2 0 0 2 2 2 1 NPCBM-associated, NEW3 domain of alpha-galactosidase TRAP_beta PF05753.9 gi|284166806|ref|YP_003405085.1| - 0.0072 15.5 0.0 0.012 14.8 0.0 1.3 1 0 0 1 1 1 1 Translocon-associated protein beta (TRAPB) Transglut_C PF00927.17 gi|284166806|ref|YP_003405085.1| - 0.11 12.5 0.0 0.33 11.0 0.0 1.8 1 1 0 1 1 1 0 Transglutaminase family, C-terminal ig like domain Man-6-P_recep PF02157.10 gi|284166807|ref|YP_003405086.1| - 0.31 10.0 1.6 0.36 9.7 0.5 1.5 1 1 0 1 1 1 0 Mannose-6-phosphate receptor AAA_3 PF07726.6 gi|284166808|ref|YP_003405087.1| - 3.9e-63 210.9 0.0 6.2e-63 210.2 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|284166808|ref|YP_003405087.1| - 1.4e-16 60.4 0.0 5.4e-16 58.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|284166808|ref|YP_003405087.1| - 1.6e-07 30.4 0.0 1.1e-05 24.4 0.0 2.1 2 0 0 2 2 2 1 MCM2/3/5 family AAA PF00004.24 gi|284166808|ref|YP_003405087.1| - 1.2e-06 28.7 0.0 1.2e-05 25.5 0.0 2.3 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|284166808|ref|YP_003405087.1| - 7.3e-06 25.5 0.0 5.6e-05 22.6 0.0 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.7 gi|284166808|ref|YP_003405087.1| - 0.00012 21.2 0.0 0.0021 17.1 0.0 2.5 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Mg_chelatase PF01078.16 gi|284166808|ref|YP_003405087.1| - 0.009 15.1 0.1 1.9 7.6 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_18 PF13238.1 gi|284166808|ref|YP_003405087.1| - 0.042 14.1 0.0 0.075 13.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain Fimbrial_PilY2 PF14481.1 gi|284166808|ref|YP_003405087.1| - 0.11 11.9 0.1 16 4.9 0.0 2.8 2 1 1 3 3 3 0 Type 4 fimbrial biogenesis protein PilY2 DUF326 PF03860.11 gi|284166809|ref|YP_003405088.1| - 8.4e-09 34.7 44.3 0.0031 17.2 4.4 5.0 3 1 1 4 4 4 4 Domain of Unknown Function (DUF326) AOX PF01786.12 gi|284166809|ref|YP_003405088.1| - 0.13 11.6 0.2 0.15 11.4 0.1 1.1 1 0 0 1 1 1 0 Alternative oxidase Wyosine_form PF08608.7 gi|284166809|ref|YP_003405088.1| - 2.6 8.2 4.8 7.1 6.8 1.1 2.3 1 1 1 2 2 2 0 Wyosine base formation Ldr_toxin PF13940.1 gi|284166811|ref|YP_003405090.1| - 0.54 10.0 7.0 0.33 10.7 1.2 2.8 1 1 1 2 2 2 0 Toxin Ldr, type I toxin-antitoxin system NOG1 PF06858.9 gi|284166812|ref|YP_003405091.1| - 4.8e-18 64.7 0.0 1.1e-17 63.6 0.0 1.6 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.18 gi|284166812|ref|YP_003405091.1| - 2.7e-17 62.7 0.0 5.4e-17 61.8 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|284166812|ref|YP_003405091.1| - 1.9e-09 37.0 0.0 2.8e-09 36.4 0.0 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B Dynamin_N PF00350.18 gi|284166812|ref|YP_003405091.1| - 0.00023 21.0 0.5 1.5 8.6 0.0 3.1 2 1 1 3 3 3 2 Dynamin family Miro PF08477.8 gi|284166812|ref|YP_003405091.1| - 0.00036 21.0 0.0 0.00076 19.9 0.0 1.6 1 0 0 1 1 1 1 Miro-like protein DUF258 PF03193.11 gi|284166812|ref|YP_003405091.1| - 0.043 12.9 0.0 0.13 11.4 0.0 1.8 1 1 0 1 1 1 0 Protein of unknown function, DUF258 APP_E2 PF12925.2 gi|284166812|ref|YP_003405091.1| - 0.06 12.9 2.0 0.19 11.2 0.7 2.0 1 1 1 2 2 2 0 E2 domain of amyloid precursor protein EI24 PF07264.6 gi|284166813|ref|YP_003405092.1| - 0.074 12.4 0.0 0.078 12.3 0.0 1.1 1 0 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) Innexin PF00876.13 gi|284166813|ref|YP_003405092.1| - 0.089 11.8 0.0 0.094 11.8 0.0 1.2 1 0 0 1 1 1 0 Innexin Big_2 PF02368.13 gi|284166814|ref|YP_003405093.1| - 0.00052 19.8 7.5 0.00053 19.8 3.5 2.2 1 1 1 2 2 2 1 Bacterial Ig-like domain (group 2) Arch_flagellin PF01917.11 gi|284166814|ref|YP_003405093.1| - 0.0014 18.2 0.5 0.0014 18.2 0.3 2.1 1 1 0 2 2 2 1 Archaebacterial flagellin Big_1 PF02369.11 gi|284166814|ref|YP_003405093.1| - 0.008 16.0 2.3 0.019 14.8 1.6 1.7 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 1) DUF389 PF04087.9 gi|284166815|ref|YP_003405094.1| - 5.9e-36 123.4 20.0 5.9e-36 123.4 13.9 2.2 3 0 0 3 3 3 1 Domain of unknown function (DUF389) DUF4131 PF13567.1 gi|284166815|ref|YP_003405094.1| - 0.69 9.2 7.4 0.15 11.5 0.3 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) MMR_HSR1 PF01926.18 gi|284166816|ref|YP_003405095.1| - 2.4e-17 62.9 0.0 3.8e-17 62.3 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|284166816|ref|YP_003405095.1| - 8.9e-13 47.7 0.4 1.6e-11 43.7 0.2 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|284166816|ref|YP_003405095.1| - 1.1e-06 28.2 0.0 0.00024 20.6 0.0 2.2 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain AAA_18 PF13238.1 gi|284166816|ref|YP_003405095.1| - 0.00018 21.8 0.0 0.00026 21.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AIG1 PF04548.11 gi|284166816|ref|YP_003405095.1| - 0.0003 19.9 0.0 0.00044 19.4 0.0 1.3 1 0 0 1 1 1 1 AIG1 family Dynamin_N PF00350.18 gi|284166816|ref|YP_003405095.1| - 0.001 18.8 0.1 0.02 14.7 0.0 2.2 1 1 1 2 2 2 1 Dynamin family AAA_17 PF13207.1 gi|284166816|ref|YP_003405095.1| - 0.0045 17.8 0.0 0.0074 17.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain TIP49 PF06068.8 gi|284166816|ref|YP_003405095.1| - 0.0045 15.7 0.2 0.0072 15.0 0.1 1.3 1 0 0 1 1 1 1 TIP49 C-terminus ABC_tran PF00005.22 gi|284166816|ref|YP_003405095.1| - 0.006 16.8 0.0 0.0078 16.5 0.0 1.5 1 1 0 1 1 1 1 ABC transporter Miro PF08477.8 gi|284166816|ref|YP_003405095.1| - 0.0062 17.0 0.1 0.028 14.8 0.1 2.1 1 1 0 1 1 1 1 Miro-like protein DUF258 PF03193.11 gi|284166816|ref|YP_003405095.1| - 0.0069 15.5 0.1 0.016 14.3 0.1 1.7 1 1 0 1 1 1 1 Protein of unknown function, DUF258 Ras PF00071.17 gi|284166816|ref|YP_003405095.1| - 0.007 15.7 0.1 0.022 14.1 0.0 1.8 2 0 0 2 2 2 1 Ras family MobB PF03205.9 gi|284166816|ref|YP_003405095.1| - 0.0088 15.7 0.2 0.037 13.7 0.0 2.0 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B ATP_bind_1 PF03029.12 gi|284166816|ref|YP_003405095.1| - 0.012 15.1 1.4 1.2 8.6 0.0 2.9 2 1 0 3 3 3 0 Conserved hypothetical ATP binding protein AAA_10 PF12846.2 gi|284166816|ref|YP_003405095.1| - 0.018 14.5 0.0 0.022 14.1 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_29 PF13555.1 gi|284166816|ref|YP_003405095.1| - 0.028 13.9 0.0 0.051 13.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Arf PF00025.16 gi|284166816|ref|YP_003405095.1| - 0.029 13.6 0.1 0.18 11.0 0.1 2.0 1 1 0 1 1 1 0 ADP-ribosylation factor family Gtr1_RagA PF04670.7 gi|284166816|ref|YP_003405095.1| - 0.06 12.4 0.0 0.088 11.9 0.0 1.2 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region Arch_ATPase PF01637.13 gi|284166816|ref|YP_003405095.1| - 0.075 12.7 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase AAA_25 PF13481.1 gi|284166816|ref|YP_003405095.1| - 0.11 11.8 0.1 0.52 9.6 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|284166816|ref|YP_003405095.1| - 0.14 11.1 0.0 0.25 10.3 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.1 gi|284166816|ref|YP_003405095.1| - 0.17 12.0 0.3 0.72 9.9 0.1 2.2 2 2 0 2 2 2 0 AAA domain Acetyltransf_10 PF13673.1 gi|284166817|ref|YP_003405096.1| - 1.8e-17 63.4 0.0 2.4e-17 63.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|284166817|ref|YP_003405096.1| - 5.9e-15 55.0 0.1 9.5e-15 54.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|284166817|ref|YP_003405096.1| - 4.2e-11 42.8 0.0 8.5e-11 41.8 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|284166817|ref|YP_003405096.1| - 1e-09 38.2 0.0 1.4e-09 37.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|284166817|ref|YP_003405096.1| - 3.6e-08 33.6 0.0 4.7e-08 33.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|284166817|ref|YP_003405096.1| - 1.5e-07 31.0 0.0 2.5e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|284166817|ref|YP_003405096.1| - 0.0032 17.4 0.0 0.0043 17.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.1 gi|284166817|ref|YP_003405096.1| - 0.079 12.7 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase Acetyltransf_CG PF14542.1 gi|284166817|ref|YP_003405096.1| - 0.093 12.6 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Polysacc_deac_1 PF01522.16 gi|284166818|ref|YP_003405097.1| - 4.8e-12 45.5 0.0 3.3e-08 33.1 0.1 2.3 2 0 0 2 2 2 2 Polysaccharide deacetylase 2-Hacid_dh_C PF02826.14 gi|284166819|ref|YP_003405098.1| - 1.6e-53 180.4 0.0 2.2e-53 180.0 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|284166819|ref|YP_003405098.1| - 2.3e-07 30.3 0.0 2.8e-07 30.0 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain F420_oxidored PF03807.12 gi|284166819|ref|YP_003405098.1| - 0.00059 20.2 0.0 0.0015 18.9 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Pyr_redox PF00070.22 gi|284166819|ref|YP_003405098.1| - 0.0044 17.3 0.1 0.015 15.6 0.1 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase AdoHcyase_NAD PF00670.16 gi|284166819|ref|YP_003405098.1| - 0.005 16.6 0.7 0.029 14.2 0.1 2.1 2 1 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Nup35_RRM_2 PF14605.1 gi|284166819|ref|YP_003405098.1| - 0.0055 16.4 0.0 0.011 15.4 0.0 1.5 1 0 0 1 1 1 1 Nup53/35/40-type RNA recognition motif NAD_binding_2 PF03446.10 gi|284166819|ref|YP_003405098.1| - 0.017 14.9 0.0 0.029 14.2 0.0 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Oxidored_nitro PF00148.14 gi|284166819|ref|YP_003405098.1| - 0.026 13.1 0.0 0.037 12.6 0.0 1.2 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase XdhC_C PF13478.1 gi|284166819|ref|YP_003405098.1| - 0.03 14.6 0.1 0.44 10.8 0.0 2.2 2 0 0 2 2 2 0 XdhC Rossmann domain IlvN PF07991.7 gi|284166819|ref|YP_003405098.1| - 0.066 12.5 0.0 0.1 11.9 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_10 PF13460.1 gi|284166819|ref|YP_003405098.1| - 0.089 12.7 0.2 0.28 11.1 0.0 1.8 2 0 0 2 2 2 0 NADH(P)-binding 3HCDH_N PF02737.13 gi|284166819|ref|YP_003405098.1| - 0.14 11.7 0.6 0.29 10.7 0.3 1.6 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IF-2B PF01008.12 gi|284166820|ref|YP_003405099.1| - 2.8e-44 151.2 0.2 3.5e-44 150.8 0.2 1.1 1 0 0 1 1 1 1 Initiation factor 2 subunit family NUDIX PF00293.23 gi|284166820|ref|YP_003405099.1| - 7.7e-06 25.5 0.5 1.5e-05 24.6 0.4 1.4 1 0 0 1 1 1 1 NUDIX domain Metallophos_2 PF12850.2 gi|284166821|ref|YP_003405100.1| - 4.6e-25 88.2 1.2 5.5e-25 88.0 0.8 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|284166821|ref|YP_003405100.1| - 0.26 10.6 1.1 8.2 5.7 0.0 2.3 1 1 1 2 2 2 0 Calcineurin-like phosphoesterase RHH_1 PF01402.16 gi|284166822|ref|YP_003405101.1| - 1.8e-05 24.4 0.0 4.1e-05 23.2 0.0 1.7 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.2 gi|284166822|ref|YP_003405101.1| - 0.077 12.7 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 Ribbon-helix-helix domain Nramp PF01566.13 gi|284166823|ref|YP_003405102.1| - 1.5e-96 323.3 25.1 1.8e-96 323.0 17.4 1.1 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein EIID-AGA PF03613.9 gi|284166823|ref|YP_003405102.1| - 0.023 13.6 0.1 0.023 13.6 0.1 3.1 4 0 0 4 4 4 0 PTS system mannose/fructose/sorbose family IID component Hydantoinase_A PF01968.13 gi|284166824|ref|YP_003405103.1| - 3.8e-91 305.2 17.3 1.3e-90 303.4 5.3 2.4 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|284166824|ref|YP_003405103.1| - 8.8e-51 171.8 2.3 7.6e-50 168.8 0.0 3.0 3 0 0 3 3 3 1 Hydantoinase/oxoprolinase N-terminal region DUF294 PF03445.8 gi|284166824|ref|YP_003405103.1| - 0.22 11.1 0.3 1.3 8.5 0.0 2.2 2 0 0 2 2 2 0 Putative nucleotidyltransferase DUF294 MutL PF13941.1 gi|284166824|ref|YP_003405103.1| - 0.29 9.3 10.4 0.075 11.3 0.4 2.6 3 0 0 3 3 3 0 MutL protein TPR_9 PF13371.1 gi|284166824|ref|YP_003405103.1| - 1.2 9.0 6.1 0.26 11.1 0.8 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat Hydantoinase_B PF02538.9 gi|284166825|ref|YP_003405104.1| - 5.2e-153 510.0 0.0 6.9e-153 509.6 0.0 1.1 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Asp_Glu_race PF01177.17 gi|284166826|ref|YP_003405105.1| - 2.7e-29 102.6 1.1 3.2e-29 102.3 0.8 1.0 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase B12-binding PF02310.14 gi|284166826|ref|YP_003405105.1| - 0.0038 17.1 1.1 0.15 11.9 0.0 2.8 1 1 2 3 3 3 1 B12 binding domain AroM PF07302.6 gi|284166826|ref|YP_003405105.1| - 0.022 14.1 0.0 2.9 7.1 0.0 2.7 2 2 0 2 2 2 0 AroM protein Glyco_transf_28 PF03033.15 gi|284166826|ref|YP_003405105.1| - 0.094 12.4 0.0 0.51 10.1 0.0 2.0 1 1 0 1 1 1 0 Glycosyltransferase family 28 N-terminal domain AAA_12 PF13087.1 gi|284166826|ref|YP_003405105.1| - 0.1 11.9 0.0 0.17 11.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain F420_ligase PF01996.11 gi|284166827|ref|YP_003405106.1| - 5e-69 231.8 0.0 5.7e-69 231.6 0.0 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase Methyltransf_31 PF13847.1 gi|284166828|ref|YP_003405107.1| - 3.8e-21 75.2 0.0 7.4e-21 74.3 0.0 1.4 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|284166828|ref|YP_003405107.1| - 4.6e-21 75.1 0.0 7.2e-21 74.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|284166828|ref|YP_003405107.1| - 9.8e-20 70.6 0.0 2.8e-19 69.1 0.0 1.6 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|284166828|ref|YP_003405107.1| - 6e-16 59.0 0.1 8.8e-16 58.4 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|284166828|ref|YP_003405107.1| - 1.1e-15 57.8 0.0 1.6e-15 57.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|284166828|ref|YP_003405107.1| - 5.6e-14 52.3 0.1 9.7e-14 51.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|284166828|ref|YP_003405107.1| - 3.5e-13 49.5 0.0 5.3e-13 48.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|284166828|ref|YP_003405107.1| - 3.3e-06 27.1 1.2 9.5e-06 25.6 0.8 1.7 1 1 0 1 1 1 1 Methyltransferase domain tRNA_U5-meth_tr PF05958.6 gi|284166828|ref|YP_003405107.1| - 7e-05 21.6 0.0 9.1e-05 21.3 0.0 1.1 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase MTS PF05175.9 gi|284166828|ref|YP_003405107.1| - 0.00014 21.2 0.0 0.00022 20.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_9 PF08003.6 gi|284166828|ref|YP_003405107.1| - 0.001 17.8 0.0 0.0014 17.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_4 PF02390.12 gi|284166828|ref|YP_003405107.1| - 0.0016 17.4 0.0 0.016 14.2 0.0 2.0 2 0 0 2 2 2 1 Putative methyltransferase Methyltransf_32 PF13679.1 gi|284166828|ref|YP_003405107.1| - 0.0022 17.6 0.0 0.0031 17.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|284166828|ref|YP_003405107.1| - 0.003 16.6 0.0 0.0044 16.1 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase NodS PF05401.6 gi|284166828|ref|YP_003405107.1| - 0.004 16.5 0.0 0.0062 15.9 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) DREV PF05219.7 gi|284166828|ref|YP_003405107.1| - 0.004 16.0 0.0 0.0053 15.6 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase PCMT PF01135.14 gi|284166828|ref|YP_003405107.1| - 0.0059 16.1 0.0 0.0086 15.6 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Pox_MCEL PF03291.11 gi|284166828|ref|YP_003405107.1| - 0.009 14.9 0.0 0.1 11.4 0.0 2.0 1 1 0 1 1 1 1 mRNA capping enzyme Methyltransf_29 PF03141.11 gi|284166828|ref|YP_003405107.1| - 0.011 14.1 0.1 0.014 13.7 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_8 PF05148.10 gi|284166828|ref|YP_003405107.1| - 0.011 15.3 0.1 0.043 13.4 0.0 1.8 1 1 0 1 1 1 0 Hypothetical methyltransferase DZR PF12773.2 gi|284166828|ref|YP_003405107.1| - 0.093 12.5 0.2 0.18 11.6 0.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon Auto_anti-p27 PF06677.7 gi|284166828|ref|YP_003405107.1| - 0.099 12.4 0.2 0.21 11.4 0.1 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-dskA_traR PF01258.12 gi|284166828|ref|YP_003405107.1| - 2.8 7.7 8.8 2.3 8.0 0.1 3.3 3 0 0 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger Bac_luciferase PF00296.15 gi|284166829|ref|YP_003405108.1| - 2.5e-64 217.3 11.0 2.5e-64 217.3 7.6 1.5 1 1 1 2 2 2 1 Luciferase-like monooxygenase VitK2_biosynth PF02621.9 gi|284166829|ref|YP_003405108.1| - 0.015 14.5 0.0 0.026 13.7 0.0 1.3 1 0 0 1 1 1 0 Menaquinone biosynthesis Gram_pos_anchor PF00746.16 gi|284166830|ref|YP_003405109.1| - 1.1 9.0 10.3 0.61 9.9 0.9 2.1 1 1 1 2 2 2 0 Gram positive anchor A2L_zn_ribbon PF08792.5 gi|284166831|ref|YP_003405110.1| - 0.0002 20.6 1.3 0.00042 19.6 0.9 1.5 1 0 0 1 1 1 1 A2L zinc ribbon domain zf-RING_3 PF14369.1 gi|284166831|ref|YP_003405110.1| - 0.0022 17.9 2.4 0.0063 16.4 1.7 1.8 1 0 0 1 1 1 1 zinc-finger TF_Zn_Ribbon PF08271.7 gi|284166831|ref|YP_003405110.1| - 0.017 14.4 2.8 0.017 14.4 1.9 2.5 2 1 0 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|284166831|ref|YP_003405110.1| - 0.023 13.9 0.5 0.047 12.9 0.3 1.6 1 0 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|284166831|ref|YP_003405110.1| - 0.024 14.6 2.1 0.058 13.3 1.4 1.6 1 0 0 1 1 1 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|284166831|ref|YP_003405110.1| - 0.18 11.5 1.6 0.31 10.7 1.1 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.2 gi|284166831|ref|YP_003405110.1| - 4.8 7.0 6.3 6.6 6.6 0.3 2.3 1 1 0 2 2 2 0 Transposase zinc-ribbon domain CSD PF00313.17 gi|284166832|ref|YP_003405111.1| - 1.4e-20 72.7 0.2 1.6e-20 72.6 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|284166832|ref|YP_003405111.1| - 0.0049 16.5 1.4 0.0079 15.9 1.0 1.4 1 1 0 1 1 1 1 S1-like OB_RNB PF08206.6 gi|284166832|ref|YP_003405111.1| - 0.0095 15.4 1.9 0.014 14.8 1.3 1.3 1 0 0 1 1 1 1 Ribonuclease B OB domain CusF_Ec PF11604.3 gi|284166832|ref|YP_003405111.1| - 0.018 14.8 0.0 0.022 14.6 0.0 1.3 1 0 0 1 1 1 0 Copper binding periplasmic protein CusF AAA_3 PF07726.6 gi|284166833|ref|YP_003405112.1| - 2.3e-61 205.1 0.0 8e-61 203.4 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|284166833|ref|YP_003405112.1| - 1e-13 51.1 0.0 1.9e-13 50.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|284166833|ref|YP_003405112.1| - 2.8e-06 27.5 0.0 8e-06 26.0 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|284166833|ref|YP_003405112.1| - 6.2e-06 25.7 0.0 0.0043 16.5 0.0 2.2 2 0 0 2 2 2 2 Sigma-54 interaction domain MCM PF00493.18 gi|284166833|ref|YP_003405112.1| - 1.1e-05 24.4 0.0 0.00052 18.9 0.0 2.5 2 1 0 2 2 2 1 MCM2/3/5 family Mg_chelatase PF01078.16 gi|284166833|ref|YP_003405112.1| - 0.00011 21.4 0.1 0.003 16.7 0.0 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI RuvB_N PF05496.7 gi|284166833|ref|YP_003405112.1| - 0.00015 20.9 0.0 0.00073 18.6 0.0 2.0 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|284166833|ref|YP_003405112.1| - 0.11 12.6 0.0 0.52 10.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain DUF2001 PF09393.5 gi|284166833|ref|YP_003405112.1| - 0.16 11.6 0.0 0.26 10.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2001) DUF58 PF01882.13 gi|284166834|ref|YP_003405113.1| - 1.6e-13 50.5 0.6 4.9e-13 49.0 0.4 1.9 1 0 0 1 1 1 1 Protein of unknown function DUF58 Transglut_core PF01841.14 gi|284166835|ref|YP_003405114.1| - 1.2e-28 99.5 0.2 2.8e-28 98.3 0.1 1.7 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF4129 PF13559.1 gi|284166835|ref|YP_003405114.1| - 2.3e-06 27.4 7.5 2.3e-06 27.4 5.2 2.8 3 0 0 3 3 3 1 Domain of unknown function (DUF4129) DUF3488 PF11992.3 gi|284166835|ref|YP_003405114.1| - 0.0032 16.1 0.0 0.0032 16.1 0.0 2.7 2 1 1 3 3 3 1 Domain of unknown function (DUF3488) Transglut_core3 PF13471.1 gi|284166835|ref|YP_003405114.1| - 0.0056 16.4 0.2 0.026 14.3 0.0 2.1 2 0 0 2 2 2 1 Transglutaminase-like superfamily QueT PF06177.6 gi|284166835|ref|YP_003405114.1| - 6.5 6.7 10.6 0.27 11.2 2.3 2.0 2 0 0 2 2 2 0 QueT transporter SUI1 PF01253.17 gi|284166836|ref|YP_003405115.1| - 5.3e-24 83.8 0.0 6.1e-24 83.6 0.0 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 DTW PF03942.10 gi|284166836|ref|YP_003405115.1| - 0.055 12.6 0.5 0.068 12.3 0.4 1.1 1 0 0 1 1 1 0 DTW domain Img2 PF05046.9 gi|284166836|ref|YP_003405115.1| - 0.064 13.4 0.0 0.084 13.1 0.0 1.4 1 1 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) Rhodanese PF00581.15 gi|284166837|ref|YP_003405116.1| - 4.1e-13 49.6 0.0 4.8e-13 49.4 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain NUDIX PF00293.23 gi|284166838|ref|YP_003405117.1| - 1.2e-14 54.0 0.5 2.5e-14 53.0 0.3 1.5 1 0 0 1 1 1 1 NUDIX domain SpoVAD PF07451.6 gi|284166839|ref|YP_003405118.1| - 0.0025 16.3 0.0 0.0028 16.1 0.0 1.1 1 0 0 1 1 1 1 Stage V sporulation protein AD (SpoVAD) Reductase_C PF14759.1 gi|284166839|ref|YP_003405118.1| - 0.042 14.1 0.5 0.18 12.1 0.0 1.9 2 0 0 2 2 2 0 Reductase C-terminal DUF2884 PF11101.3 gi|284166839|ref|YP_003405118.1| - 0.089 12.1 0.0 0.13 11.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2884) Inhibitor_I53 PF11714.3 gi|284166839|ref|YP_003405118.1| - 6.6 6.7 8.2 16 5.5 0.1 3.0 1 1 2 3 3 3 0 Thrombin inhibitor Madanin TT_ORF2 PF02957.10 gi|284166840|ref|YP_003405119.1| - 0.25 12.0 5.5 0.49 11.1 3.8 1.5 1 0 0 1 1 1 0 TT viral ORF2 Acetyltransf_1 PF00583.19 gi|284166841|ref|YP_003405120.1| - 1e-16 60.6 0.1 1.5e-16 60.1 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|284166841|ref|YP_003405120.1| - 6.7e-14 52.0 0.0 8.7e-14 51.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|284166841|ref|YP_003405120.1| - 1.3e-10 41.2 0.0 1.8e-10 40.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|284166841|ref|YP_003405120.1| - 8.1e-10 38.6 0.0 1.8e-09 37.5 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|284166841|ref|YP_003405120.1| - 5.4e-07 29.2 0.0 1.1e-06 28.2 0.0 1.5 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|284166841|ref|YP_003405120.1| - 1.9e-05 24.6 0.0 2.3e-05 24.3 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|284166841|ref|YP_003405120.1| - 0.0065 16.3 0.0 0.0085 15.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|284166841|ref|YP_003405120.1| - 0.037 14.2 0.0 0.049 13.7 0.0 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF892 PF05974.7 gi|284166842|ref|YP_003405121.1| - 2.5e-35 121.6 11.2 1.1e-34 119.5 7.8 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF892) Ferritin PF00210.19 gi|284166842|ref|YP_003405121.1| - 3.1e-05 23.7 13.9 5.6e-05 22.9 9.6 1.4 1 1 0 1 1 1 1 Ferritin-like domain RNB PF00773.14 gi|284166842|ref|YP_003405121.1| - 0.01 15.1 0.8 0.012 14.8 0.6 1.1 1 0 0 1 1 1 0 RNB domain DUF2277 PF10041.4 gi|284166842|ref|YP_003405121.1| - 0.027 14.4 0.1 0.062 13.2 0.1 1.7 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2277) Toxin_52 PF15605.1 gi|284166842|ref|YP_003405121.1| - 0.13 12.1 1.2 0.41 10.5 0.1 2.0 2 0 0 2 2 2 0 Putative toxin 52 DUF1488 PF07369.6 gi|284166842|ref|YP_003405121.1| - 0.15 11.8 2.2 0.4 10.5 1.1 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF1488) Homeobox PF00046.24 gi|284166842|ref|YP_003405121.1| - 0.23 11.0 2.7 1.8 8.2 0.1 3.2 3 1 1 4 4 4 0 Homeobox domain DUF2383 PF09537.5 gi|284166842|ref|YP_003405121.1| - 0.28 11.4 7.5 0.54 10.5 0.4 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF2383) Vir_act_alpha_C PF10400.4 gi|284166842|ref|YP_003405121.1| - 0.31 11.4 7.9 5.1 7.5 0.2 2.9 2 1 1 3 3 3 0 Virulence activator alpha C-term TBPIP PF07106.8 gi|284166842|ref|YP_003405121.1| - 0.32 10.5 2.9 0.41 10.1 0.5 1.9 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) FlgN PF05130.7 gi|284166842|ref|YP_003405121.1| - 0.66 10.2 12.7 0.92 9.7 2.3 2.2 1 1 0 2 2 2 0 FlgN protein MerR-DNA-bind PF09278.6 gi|284166842|ref|YP_003405121.1| - 2.1 8.8 9.3 0.68 10.3 2.6 2.6 2 1 0 2 2 2 0 MerR, DNA binding DinB_2 PF12867.2 gi|284166842|ref|YP_003405121.1| - 4.6 7.5 7.3 54 4.1 5.0 2.2 1 1 0 1 1 1 0 DinB superfamily GTPase_Cys_C PF12631.2 gi|284166842|ref|YP_003405121.1| - 8.5 6.8 6.8 25 5.3 3.1 2.5 1 1 1 2 2 2 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE Rbsn PF11464.3 gi|284166842|ref|YP_003405121.1| - 10 5.8 7.4 0.86 9.2 1.1 2.2 2 1 1 3 3 3 0 Rabenosyn Rab binding domain BssS PF13991.1 gi|284166843|ref|YP_003405122.1| - 0.0065 16.1 0.1 0.0086 15.7 0.1 1.4 1 0 0 1 1 1 1 BssS protein family Spectrin PF00435.16 gi|284166843|ref|YP_003405122.1| - 0.079 13.2 1.2 0.11 12.7 0.8 1.2 1 0 0 1 1 1 0 Spectrin repeat Rop-like PF05082.8 gi|284166843|ref|YP_003405122.1| - 1.9 8.0 4.9 1.1 8.8 2.0 1.7 2 0 0 2 2 2 0 Rop-like HTH_20 PF12840.2 gi|284166847|ref|YP_003405126.1| - 8.2e-13 47.9 0.1 1.4e-12 47.2 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|284166847|ref|YP_003405126.1| - 0.00021 20.7 0.1 0.00039 19.9 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|284166847|ref|YP_003405126.1| - 0.00042 19.9 0.1 0.0011 18.6 0.0 1.8 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_7 PF02796.10 gi|284166847|ref|YP_003405126.1| - 0.0019 18.0 0.0 0.0056 16.5 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase MarR_2 PF12802.2 gi|284166847|ref|YP_003405126.1| - 0.0019 17.8 0.0 0.0035 16.9 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|284166847|ref|YP_003405126.1| - 0.0035 16.9 0.0 0.0056 16.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family CENP-B_N PF04218.8 gi|284166847|ref|YP_003405126.1| - 0.011 15.1 0.0 0.024 14.0 0.0 1.5 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain HTH_26 PF13443.1 gi|284166847|ref|YP_003405126.1| - 0.05 13.8 0.0 0.2 11.8 0.0 1.9 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain FUR PF01475.14 gi|284166847|ref|YP_003405126.1| - 0.065 13.1 0.1 0.1 12.5 0.0 1.5 1 1 0 1 1 1 0 Ferric uptake regulator family HTH_11 PF08279.7 gi|284166847|ref|YP_003405126.1| - 0.089 12.4 0.1 0.18 11.4 0.1 1.5 1 0 0 1 1 1 0 HTH domain PadR PF03551.9 gi|284166847|ref|YP_003405126.1| - 0.1 12.3 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Rax2 PF12768.2 gi|284166848|ref|YP_003405127.1| - 0.022 13.9 0.1 0.022 13.9 0.1 1.6 2 1 1 3 3 3 0 Cortical protein marker for cell polarity DUF981 PF06168.6 gi|284166848|ref|YP_003405127.1| - 0.04 13.6 9.0 0.065 13.0 6.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF981) 7TMR-DISM_7TM PF07695.6 gi|284166848|ref|YP_003405127.1| - 0.098 12.3 7.2 0.12 12.0 5.0 1.2 1 0 0 1 1 1 0 7TM diverse intracellular signalling FtsX PF02687.16 gi|284166848|ref|YP_003405127.1| - 0.27 11.0 0.1 0.27 11.0 0.1 2.2 1 1 1 2 2 2 0 FtsX-like permease family DUF3353 PF11833.3 gi|284166848|ref|YP_003405127.1| - 0.72 9.2 6.2 0.89 8.9 4.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3353) Cytochrom_B558a PF05038.8 gi|284166848|ref|YP_003405127.1| - 7.6 6.1 7.6 4.9 6.7 1.3 2.0 1 1 1 2 2 2 0 Cytochrome Cytochrome b558 alpha-subunit Cu-oxidase_2 PF07731.9 gi|284166849|ref|YP_003405128.1| - 1.9e-27 95.4 7.7 1.3e-16 60.3 0.1 3.1 2 1 0 2 2 2 2 Multicopper oxidase Cu-oxidase_3 PF07732.10 gi|284166849|ref|YP_003405128.1| - 1.6e-22 79.4 4.4 6.5e-17 61.3 1.0 2.7 2 1 0 2 2 2 2 Multicopper oxidase Cu-oxidase PF00394.17 gi|284166849|ref|YP_003405128.1| - 2.4e-12 47.0 0.0 5.2e-12 45.9 0.0 1.6 2 0 0 2 2 2 1 Multicopper oxidase Cupredoxin_1 PF13473.1 gi|284166849|ref|YP_003405128.1| - 0.0023 17.7 0.0 0.079 12.8 0.0 2.7 2 1 0 2 2 2 1 Cupredoxin-like domain fn3 PF00041.16 gi|284166849|ref|YP_003405128.1| - 0.059 13.5 0.2 0.42 10.7 0.0 2.3 2 0 0 2 2 2 0 Fibronectin type III domain Copper-bind PF00127.15 gi|284166849|ref|YP_003405128.1| - 0.18 12.0 3.2 0.27 11.4 0.8 2.1 2 0 0 2 2 2 0 Copper binding proteins, plastocyanin/azurin family Pyr_redox_2 PF07992.9 gi|284166850|ref|YP_003405129.1| - 1.7e-43 148.8 6.5 2.3e-41 141.9 4.5 3.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|284166850|ref|YP_003405129.1| - 2.2e-39 133.8 1.0 3.4e-39 133.2 0.2 1.7 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|284166850|ref|YP_003405129.1| - 1.2e-24 86.5 2.4 1.9e-20 73.0 0.0 3.5 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|284166850|ref|YP_003405129.1| - 8.3e-10 38.0 6.6 5.8e-07 28.7 0.2 3.3 3 0 0 3 3 3 3 FAD binding domain GIDA PF01134.17 gi|284166850|ref|YP_003405129.1| - 6.9e-09 35.0 7.5 4.7e-07 29.0 1.2 2.8 3 1 0 3 3 3 2 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|284166850|ref|YP_003405129.1| - 6.6e-08 32.8 0.1 1.8e-07 31.4 0.0 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|284166850|ref|YP_003405129.1| - 1e-07 31.8 2.2 0.0015 18.5 0.1 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|284166850|ref|YP_003405129.1| - 2.4e-07 30.0 2.0 0.0015 17.6 0.1 3.1 3 0 0 3 3 3 2 Thi4 family HI0933_like PF03486.9 gi|284166850|ref|YP_003405129.1| - 3e-07 29.2 4.9 1.6e-05 23.5 0.1 2.9 4 0 0 4 4 4 2 HI0933-like protein DAO PF01266.19 gi|284166850|ref|YP_003405129.1| - 9.7e-07 28.0 13.7 0.00064 18.7 0.5 4.1 4 1 1 5 5 5 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|284166850|ref|YP_003405129.1| - 2.1e-06 27.1 0.6 2.1e-06 27.1 0.4 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|284166850|ref|YP_003405129.1| - 4.1e-06 26.1 2.7 0.012 14.6 0.2 2.5 2 0 0 2 2 2 2 FAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|284166850|ref|YP_003405129.1| - 2.1e-05 24.0 0.4 0.00033 20.0 0.0 2.6 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.13 gi|284166850|ref|YP_003405129.1| - 3.7e-05 23.4 1.4 0.00071 19.2 0.0 2.8 3 0 0 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XdhC_C PF13478.1 gi|284166850|ref|YP_003405129.1| - 0.00012 22.3 0.5 0.045 14.0 0.0 3.5 3 2 0 3 3 3 1 XdhC Rossmann domain Lycopene_cycl PF05834.7 gi|284166850|ref|YP_003405129.1| - 0.00022 20.2 4.1 0.014 14.3 0.2 2.6 3 0 0 3 3 3 2 Lycopene cyclase protein AlaDh_PNT_C PF01262.16 gi|284166850|ref|YP_003405129.1| - 0.00023 20.7 2.2 0.026 14.0 0.0 2.7 3 0 0 3 3 3 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.1 gi|284166850|ref|YP_003405129.1| - 0.00078 19.6 0.8 0.86 9.8 0.0 2.8 2 1 0 2 2 2 2 Putative NAD(P)-binding Trp_halogenase PF04820.9 gi|284166850|ref|YP_003405129.1| - 0.0024 16.5 0.1 0.0024 16.5 0.1 2.3 3 0 0 3 3 3 1 Tryptophan halogenase TrkA_N PF02254.13 gi|284166850|ref|YP_003405129.1| - 0.004 17.1 0.2 0.27 11.2 0.0 2.8 2 0 0 2 2 2 1 TrkA-N domain 2-Hacid_dh_C PF02826.14 gi|284166850|ref|YP_003405129.1| - 0.0098 15.0 0.2 0.94 8.6 0.0 2.6 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_9 PF13454.1 gi|284166850|ref|YP_003405129.1| - 3.1 7.5 10.8 0.65 9.7 0.0 3.9 5 0 0 5 5 5 0 FAD-NAD(P)-binding 2-oxoacid_dh PF00198.18 gi|284166851|ref|YP_003405130.1| - 7.8e-89 296.9 0.0 1e-88 296.5 0.0 1.1 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) E3_binding PF02817.12 gi|284166851|ref|YP_003405130.1| - 2.8e-24 84.4 2.0 7.9e-17 60.6 0.2 2.8 2 0 0 2 2 2 2 e3 binding domain Biotin_lipoyl PF00364.17 gi|284166851|ref|YP_003405130.1| - 1.4e-23 82.2 1.7 3.4e-23 81.0 1.2 1.7 1 0 0 1 1 1 1 Biotin-requiring enzyme HlyD_2 PF12700.2 gi|284166851|ref|YP_003405130.1| - 1.1e-05 24.7 0.2 0.034 13.3 0.0 2.6 1 1 1 2 2 2 2 HlyD family secretion protein Biotin_lipoyl_2 PF13533.1 gi|284166851|ref|YP_003405130.1| - 1.1e-05 24.9 1.6 0.0025 17.4 0.3 2.7 1 1 1 2 2 2 2 Biotin-lipoyl like GCV_H PF01597.14 gi|284166851|ref|YP_003405130.1| - 3.9e-05 23.3 0.6 9.4e-05 22.0 0.4 1.7 1 0 0 1 1 1 1 Glycine cleavage H-protein HlyD_3 PF13437.1 gi|284166851|ref|YP_003405130.1| - 0.00017 21.8 1.8 0.021 15.1 0.2 2.6 1 1 1 2 2 2 2 HlyD family secretion protein RnfC_N PF13375.1 gi|284166851|ref|YP_003405130.1| - 0.01 15.5 0.2 0.03 14.0 0.1 1.8 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain Transket_pyr PF02779.19 gi|284166852|ref|YP_003405131.1| - 3.9e-52 176.3 0.0 4.9e-52 175.9 0.0 1.1 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.15 gi|284166852|ref|YP_003405131.1| - 9.2e-38 128.9 0.0 2e-37 127.8 0.0 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain E1_dh PF00676.15 gi|284166853|ref|YP_003405132.1| - 1.7e-88 296.2 0.0 2.6e-88 295.6 0.0 1.3 1 1 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.1 gi|284166853|ref|YP_003405132.1| - 2.2e-07 30.1 0.0 3.1e-07 29.6 0.0 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase Transketolase_N PF00456.16 gi|284166853|ref|YP_003405132.1| - 2.9e-05 23.0 0.0 5e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain TPP_enzyme_C PF02775.16 gi|284166853|ref|YP_003405132.1| - 0.0025 17.3 0.4 0.023 14.2 0.3 2.2 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HTH_41 PF14502.1 gi|284166853|ref|YP_003405132.1| - 0.037 13.6 0.0 0.093 12.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain VKG_Carbox PF05090.9 gi|284166854|ref|YP_003405133.1| - 1.5e-09 37.2 6.9 2e-09 36.8 4.8 1.1 1 0 0 1 1 1 1 Vitamin K-dependent gamma-carboxylase Radical_SAM PF04055.16 gi|284166855|ref|YP_003405134.1| - 2.9e-13 50.3 0.3 1.2e-12 48.3 0.1 1.9 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|284166855|ref|YP_003405134.1| - 0.0053 16.6 0.1 1.7 8.4 0.0 3.3 2 2 1 3 3 3 1 B12 binding domain DUF2071 PF09844.4 gi|284166856|ref|YP_003405135.1| - 3.8e-60 202.9 0.0 4.3e-60 202.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (COG2071) ADC PF06314.6 gi|284166856|ref|YP_003405135.1| - 0.00065 19.1 0.1 0.00085 18.7 0.0 1.2 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) bPH_2 PF03703.9 gi|284166857|ref|YP_003405136.1| - 1.5e-17 63.3 0.0 2.3e-17 62.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial PH domain DUF4097 PF13349.1 gi|284166857|ref|YP_003405136.1| - 0.41 10.1 3.2 1.3 8.4 0.0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4097) DUF3040 PF11239.3 gi|284166857|ref|YP_003405136.1| - 1.2 9.2 3.9 2.4 8.2 2.7 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) MSP1b PF03429.8 gi|284166858|ref|YP_003405137.1| - 0.076 10.8 0.0 0.11 10.4 0.0 1.1 1 0 0 1 1 1 0 Major surface protein 1B DEAD PF00270.24 gi|284166860|ref|YP_003405139.1| - 1.9e-26 92.5 0.0 5.9e-26 90.9 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase Sec63 PF02889.11 gi|284166860|ref|YP_003405139.1| - 9.3e-15 54.6 0.0 1.3e-14 54.1 0.0 1.2 1 0 0 1 1 1 1 Sec63 Brl domain Helicase_C PF00271.26 gi|284166860|ref|YP_003405139.1| - 1.3e-09 37.8 0.0 3.1e-09 36.5 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|284166860|ref|YP_003405139.1| - 1.5e-07 31.3 0.0 2.8e-07 30.5 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_5 PF14520.1 gi|284166860|ref|YP_003405139.1| - 0.00066 19.8 0.7 0.0024 17.9 0.5 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix domain DUF1253 PF06862.7 gi|284166860|ref|YP_003405139.1| - 0.024 13.0 0.0 0.035 12.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1253) DNA_pol_lambd_f PF10391.4 gi|284166860|ref|YP_003405139.1| - 0.11 12.0 0.0 0.3 10.6 0.0 1.7 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda HAD_2 PF13419.1 gi|284166861|ref|YP_003405140.1| - 2.9e-27 96.0 0.8 3.7e-27 95.6 0.6 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|284166861|ref|YP_003405140.1| - 1.9e-16 61.1 0.2 8.6e-15 55.7 0.1 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|284166861|ref|YP_003405140.1| - 4.6e-10 39.0 1.0 1.2e-09 37.6 0.3 2.1 2 0 0 2 2 2 1 HAD-hyrolase-like HAD PF12710.2 gi|284166861|ref|YP_003405140.1| - 1.4e-07 31.9 0.1 1.6e-07 31.6 0.1 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase NT5C PF06941.7 gi|284166861|ref|YP_003405140.1| - 0.065 12.7 0.3 0.12 11.9 0.2 1.5 1 1 0 1 1 1 0 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) MSC PF09402.5 gi|284166861|ref|YP_003405140.1| - 0.11 11.2 0.1 0.14 10.8 0.0 1.1 1 0 0 1 1 1 0 Man1-Src1p-C-terminal domain Hydrolase_6 PF13344.1 gi|284166861|ref|YP_003405140.1| - 0.13 12.2 0.0 0.82 9.5 0.0 2.2 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Tenui_NCP PF04876.7 gi|284166861|ref|YP_003405140.1| - 0.15 11.6 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 Tenuivirus major non-capsid protein DUF4066 PF13278.1 gi|284166862|ref|YP_003405141.1| - 7.2e-36 122.9 0.4 8.3e-36 122.7 0.3 1.0 1 0 0 1 1 1 1 Putative amidotransferase DJ-1_PfpI PF01965.19 gi|284166862|ref|YP_003405141.1| - 7.8e-15 54.6 1.1 1.3e-14 53.8 0.8 1.4 1 1 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.9 gi|284166862|ref|YP_003405141.1| - 0.065 12.8 0.0 0.29 10.7 0.0 1.8 2 0 0 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain AsnC_trans_reg PF01037.16 gi|284166863|ref|YP_003405142.1| - 1.4e-09 37.5 0.5 1.5e-09 37.3 0.3 1.0 1 0 0 1 1 1 1 AsnC family Redoxin PF08534.5 gi|284166864|ref|YP_003405143.1| - 0.00013 21.5 0.0 0.00017 21.1 0.0 1.2 1 0 0 1 1 1 1 Redoxin Thioredoxin_2 PF13098.1 gi|284166864|ref|YP_003405143.1| - 0.00014 22.0 0.0 0.0002 21.5 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like domain Anophelin PF10731.4 gi|284166865|ref|YP_003405144.1| - 0.32 11.1 0.0 0.32 11.1 0.0 3.5 2 1 1 3 3 3 0 Thrombin inhibitor from mosquito CRA PF06589.6 gi|284166868|ref|YP_003405147.1| - 0.025 13.9 0.4 0.061 12.6 0.2 1.6 1 0 0 1 1 1 0 Circumsporozoite-related antigen (CRA) DUF4307 PF14155.1 gi|284166868|ref|YP_003405147.1| - 0.085 12.6 0.1 2 8.2 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4307) HR1 PF02185.11 gi|284166869|ref|YP_003405148.1| - 0.054 13.2 0.1 0.088 12.5 0.1 1.3 1 0 0 1 1 1 0 Hr1 repeat DASH_Dad3 PF08656.5 gi|284166869|ref|YP_003405148.1| - 0.074 12.7 0.2 0.12 12.0 0.1 1.3 1 0 0 1 1 1 0 DASH complex subunit Dad3 GvpG PF05120.7 gi|284166869|ref|YP_003405148.1| - 0.14 11.9 1.1 0.3 10.9 0.8 1.5 1 0 0 1 1 1 0 Gas vesicle protein G DUF2721 PF11026.3 gi|284166869|ref|YP_003405148.1| - 4.7 6.8 5.7 1.5 8.5 0.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2721) zf-C4_Topoisom PF01396.14 gi|284166870|ref|YP_003405149.1| - 2.9e-05 23.4 5.0 0.0089 15.5 0.1 2.7 2 0 0 2 2 2 2 Topoisomerase DNA binding C4 zinc finger DUF91 PF01939.11 gi|284166870|ref|YP_003405149.1| - 0.00015 21.0 0.0 0.00019 20.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF91 DNA_ligase_ZBD PF03119.11 gi|284166870|ref|YP_003405149.1| - 0.065 12.9 1.0 0.065 12.9 0.7 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zinc-ribbons_6 PF07191.7 gi|284166870|ref|YP_003405149.1| - 1.1 9.0 5.4 0.58 9.9 0.7 2.4 2 0 0 2 2 2 0 zinc-ribbons tRNA_int_endo PF01974.12 gi|284166871|ref|YP_003405150.1| - 7.5e-33 112.1 0.0 1.7e-23 82.2 0.0 2.7 2 1 0 2 2 2 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|284166871|ref|YP_003405150.1| - 1.5e-27 94.9 0.5 2.1e-13 49.6 0.0 2.7 3 0 0 3 3 3 2 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.2 gi|284166871|ref|YP_003405150.1| - 0.015 14.7 0.0 3.5 7.1 0.0 2.4 2 0 0 2 2 2 0 tRNA-splicing endonuclease subunit sen54 N-term Tubulin PF00091.20 gi|284166872|ref|YP_003405151.1| - 3.8e-13 49.7 0.0 1.8e-12 47.5 0.0 2.0 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain OCD_Mu_crystall PF02423.10 gi|284166873|ref|YP_003405152.1| - 2.7e-48 164.3 0.0 3.5e-48 163.9 0.0 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family F420_oxidored PF03807.12 gi|284166873|ref|YP_003405152.1| - 0.0089 16.4 0.0 0.019 15.4 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.15 gi|284166873|ref|YP_003405152.1| - 0.021 14.8 0.0 0.035 14.2 0.0 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase DNA_binding_1 PF01035.15 gi|284166874|ref|YP_003405153.1| - 2.4e-25 88.0 0.0 3.6e-25 87.5 0.0 1.3 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Unstab_antitox PF09720.5 gi|284166874|ref|YP_003405153.1| - 0.064 12.9 0.1 0.12 12.0 0.1 1.4 1 0 0 1 1 1 0 Putative addiction module component PQQ_2 PF13360.1 gi|284166875|ref|YP_003405154.1| - 4.1e-33 114.8 10.1 9e-23 80.9 1.1 3.5 1 1 2 3 3 3 3 PQQ-like domain PQQ PF01011.16 gi|284166875|ref|YP_003405154.1| - 1.1e-22 78.3 9.6 1.1e-05 24.7 0.1 6.4 6 0 0 6 6 6 4 PQQ enzyme repeat PQQ_3 PF13570.1 gi|284166875|ref|YP_003405154.1| - 7.4e-21 73.7 34.3 3.3e-10 39.8 1.4 7.4 8 0 0 8 8 8 4 PQQ-like domain tRNA-synt_1b PF00579.20 gi|284166876|ref|YP_003405155.1| - 7.2e-43 146.7 0.0 5e-26 91.4 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) tRNA-synt_2d PF01409.15 gi|284166878|ref|YP_003405157.1| - 5.3e-81 271.4 0.0 6.9e-81 271.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) HTH_27 PF13463.1 gi|284166878|ref|YP_003405157.1| - 3.6e-05 24.0 1.7 0.071 13.4 0.1 3.2 2 1 1 3 3 3 2 Winged helix DNA-binding domain tRNA-synt_2 PF00152.15 gi|284166878|ref|YP_003405157.1| - 8.8e-05 21.4 0.5 0.085 11.6 0.0 3.0 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) MarR PF01047.17 gi|284166878|ref|YP_003405157.1| - 0.00034 20.2 0.0 0.028 14.1 0.0 2.4 2 0 0 2 2 2 1 MarR family tRNA-synt_2b PF00587.20 gi|284166878|ref|YP_003405157.1| - 0.024 14.2 0.0 0.047 13.2 0.0 1.5 1 1 0 1 1 1 0 tRNA synthetase class II core domain (G, H, P, S and T) MarR_2 PF12802.2 gi|284166878|ref|YP_003405157.1| - 0.052 13.2 2.5 0.21 11.2 0.1 2.6 3 0 0 3 3 3 0 MarR family Rrf2 PF02082.15 gi|284166878|ref|YP_003405157.1| - 0.11 12.5 0.0 0.25 11.5 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator B5 PF03484.10 gi|284166879|ref|YP_003405158.1| - 1.3e-16 60.2 0.4 1.5e-14 53.5 0.1 3.1 3 0 0 3 3 3 1 tRNA synthetase B5 domain B3_4 PF03483.12 gi|284166879|ref|YP_003405158.1| - 6.5e-13 48.5 0.0 1e-12 47.8 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain tRNA-synt_2d PF01409.15 gi|284166879|ref|YP_003405158.1| - 2.7e-06 26.7 0.0 4e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) Imm31 PF15595.1 gi|284166879|ref|YP_003405158.1| - 0.13 12.0 0.2 2.8 7.7 0.0 2.5 2 0 0 2 2 2 0 Immunity protein 31 SymE_toxin PF08845.5 gi|284166880|ref|YP_003405159.1| - 0.00029 20.6 0.0 0.00031 20.5 0.0 1.1 1 0 0 1 1 1 1 Toxin SymE, type I toxin-antitoxin system Antitoxin-MazE PF04014.13 gi|284166880|ref|YP_003405159.1| - 0.014 15.0 0.3 0.023 14.4 0.2 1.3 1 0 0 1 1 1 0 Antidote-toxin recognition MazE MC1 PF05854.6 gi|284166881|ref|YP_003405160.1| - 1.1e-46 156.7 0.2 1.2e-46 156.5 0.2 1.0 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 MFS_1 PF07690.11 gi|284166882|ref|YP_003405161.1| - 1.3e-33 116.2 65.2 1.6e-32 112.5 29.3 1.8 1 1 1 2 2 2 2 Major Facilitator Superfamily GATase PF00117.23 gi|284166883|ref|YP_003405162.1| - 1.1e-17 64.0 0.0 1.5e-17 63.7 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|284166883|ref|YP_003405162.1| - 1.7e-10 40.7 0.2 2e-09 37.1 0.1 2.4 1 1 0 1 1 1 1 Peptidase C26 DUF368 PF04018.8 gi|284166885|ref|YP_003405164.1| - 1.1e-58 198.4 18.4 1.4e-58 198.1 12.8 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF368) Nitroreductase PF00881.19 gi|284166886|ref|YP_003405165.1| - 6.6e-15 55.3 0.0 1.2e-07 31.6 0.0 2.9 2 1 0 2 2 2 2 Nitroreductase family MutS_V PF00488.16 gi|284166887|ref|YP_003405166.1| - 1.1e-10 41.2 0.0 2.2e-10 40.3 0.0 1.4 1 0 0 1 1 1 1 MutS domain V HHH PF00633.18 gi|284166887|ref|YP_003405166.1| - 0.0001 21.7 0.7 0.004 16.7 0.0 2.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|284166887|ref|YP_003405166.1| - 0.0072 16.4 1.1 0.0072 16.4 0.7 3.6 3 0 0 3 3 3 1 Helix-hairpin-helix domain AAA_21 PF13304.1 gi|284166887|ref|YP_003405166.1| - 0.023 14.6 0.0 0.15 12.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain IMS_HHH PF11798.3 gi|284166887|ref|YP_003405166.1| - 0.097 12.7 0.0 0.26 11.4 0.0 1.8 1 0 0 1 1 1 0 IMS family HHH motif DUF1059 PF06348.6 gi|284166888|ref|YP_003405167.1| - 3.6e-05 23.4 0.2 4.3e-05 23.2 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1059) DUF664 PF04978.7 gi|284166889|ref|YP_003405168.1| - 0.054 13.7 0.6 0.068 13.4 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF664) Sec16_C PF12931.2 gi|284166889|ref|YP_003405168.1| - 0.056 13.1 0.0 0.061 13.0 0.0 1.0 1 0 0 1 1 1 0 Sec23-binding domain of Sec16 AAA_16 PF13191.1 gi|284166890|ref|YP_003405169.1| - 3.3e-13 50.0 0.0 6.4e-12 45.8 0.0 2.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|284166890|ref|YP_003405169.1| - 3e-10 40.3 0.0 6.2e-10 39.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|284166890|ref|YP_003405169.1| - 4e-06 27.0 0.0 1e-05 25.7 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Cdc6_C PF09079.6 gi|284166890|ref|YP_003405169.1| - 6.6e-06 25.7 0.0 2.4e-05 23.9 0.0 2.0 1 0 0 1 1 1 1 CDC6, C terminal AAA_19 PF13245.1 gi|284166890|ref|YP_003405169.1| - 0.00012 21.7 0.1 0.00038 20.1 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain IstB_IS21 PF01695.12 gi|284166890|ref|YP_003405169.1| - 0.00016 21.1 0.2 0.24 10.8 0.0 2.6 3 0 0 3 3 2 2 IstB-like ATP binding protein Arch_ATPase PF01637.13 gi|284166890|ref|YP_003405169.1| - 0.00022 21.0 0.0 0.0005 19.8 0.0 1.5 1 1 0 1 1 1 1 Archaeal ATPase AAA_33 PF13671.1 gi|284166890|ref|YP_003405169.1| - 0.00029 20.7 0.0 0.00066 19.5 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_35 PF14516.1 gi|284166890|ref|YP_003405169.1| - 0.0008 18.1 0.0 0.035 12.7 0.0 2.3 2 0 0 2 2 2 1 AAA-like domain AAA_14 PF13173.1 gi|284166890|ref|YP_003405169.1| - 0.0012 18.7 0.1 0.017 15.0 0.0 2.3 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|284166890|ref|YP_003405169.1| - 0.0013 19.5 0.6 0.0077 17.0 0.3 2.6 1 1 0 1 1 1 1 AAA domain AAA_11 PF13086.1 gi|284166890|ref|YP_003405169.1| - 0.0021 17.6 0.0 0.0032 17.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain Viral_helicase1 PF01443.13 gi|284166890|ref|YP_003405169.1| - 0.0023 17.5 0.0 0.0037 16.8 0.0 1.3 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase NACHT PF05729.7 gi|284166890|ref|YP_003405169.1| - 0.0034 17.0 0.0 0.01 15.5 0.0 1.8 1 1 0 1 1 1 1 NACHT domain AAA_18 PF13238.1 gi|284166890|ref|YP_003405169.1| - 0.0034 17.6 0.0 0.015 15.5 0.0 2.1 2 1 0 2 2 2 1 AAA domain AAA_32 PF13654.1 gi|284166890|ref|YP_003405169.1| - 0.0037 15.9 0.1 1.2 7.7 0.0 2.5 2 0 0 2 2 2 1 AAA domain T2SE PF00437.15 gi|284166890|ref|YP_003405169.1| - 0.005 15.7 0.0 0.008 15.1 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein Sigma54_activat PF00158.21 gi|284166890|ref|YP_003405169.1| - 0.009 15.5 0.0 0.016 14.6 0.0 1.3 1 0 0 1 1 1 1 Sigma-54 interaction domain NTPase_1 PF03266.10 gi|284166890|ref|YP_003405169.1| - 0.0093 15.6 0.0 0.02 14.5 0.0 1.6 1 0 0 1 1 1 1 NTPase DUF2075 PF09848.4 gi|284166890|ref|YP_003405169.1| - 0.014 14.3 0.0 0.022 13.7 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) DUF815 PF05673.8 gi|284166890|ref|YP_003405169.1| - 0.02 13.8 0.0 0.095 11.6 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF815) Bac_DnaA PF00308.13 gi|284166890|ref|YP_003405169.1| - 0.025 14.2 0.0 0.071 12.7 0.0 1.6 2 0 0 2 2 2 0 Bacterial dnaA protein AAA_30 PF13604.1 gi|284166890|ref|YP_003405169.1| - 0.026 14.1 0.2 0.062 12.8 0.0 1.7 2 0 0 2 2 1 0 AAA domain RNA_helicase PF00910.17 gi|284166890|ref|YP_003405169.1| - 0.027 14.6 0.0 0.062 13.4 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Miro PF08477.8 gi|284166890|ref|YP_003405169.1| - 0.031 14.7 0.0 0.058 13.8 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein KAP_NTPase PF07693.9 gi|284166890|ref|YP_003405169.1| - 0.034 13.1 0.0 6.6 5.6 0.0 2.3 1 1 1 2 2 2 0 KAP family P-loop domain AAA_28 PF13521.1 gi|284166890|ref|YP_003405169.1| - 0.036 14.0 0.0 0.075 12.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|284166890|ref|YP_003405169.1| - 0.041 13.4 0.0 0.078 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain MarR_2 PF12802.2 gi|284166890|ref|YP_003405169.1| - 0.043 13.4 0.0 0.37 10.5 0.0 2.4 1 1 0 1 1 1 0 MarR family TrwB_AAD_bind PF10412.4 gi|284166890|ref|YP_003405169.1| - 0.052 12.1 0.0 0.081 11.5 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Zeta_toxin PF06414.7 gi|284166890|ref|YP_003405169.1| - 0.056 12.5 0.0 0.12 11.4 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin DUF835 PF05763.7 gi|284166890|ref|YP_003405169.1| - 0.07 12.6 0.1 0.28 10.7 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF835) SRP54 PF00448.17 gi|284166890|ref|YP_003405169.1| - 0.078 12.4 0.0 0.3 10.4 0.0 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Septin PF00735.13 gi|284166890|ref|YP_003405169.1| - 0.096 11.6 0.0 0.15 11.0 0.0 1.2 1 0 0 1 1 1 0 Septin ArgK PF03308.11 gi|284166890|ref|YP_003405169.1| - 0.098 11.4 0.0 0.17 10.6 0.0 1.3 1 0 0 1 1 1 0 ArgK protein Gtr1_RagA PF04670.7 gi|284166890|ref|YP_003405169.1| - 0.16 11.1 0.0 0.24 10.5 0.0 1.2 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region Mg_chelatase PF01078.16 gi|284166890|ref|YP_003405169.1| - 0.18 10.9 0.0 0.26 10.4 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Saccharop_dh PF03435.13 gi|284166891|ref|YP_003405170.1| - 3.1e-16 59.3 0.0 4.7e-16 58.7 0.0 1.6 1 1 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_10 PF13460.1 gi|284166891|ref|YP_003405170.1| - 1.7e-08 34.7 0.0 7.2e-08 32.6 0.0 1.9 2 0 0 2 2 2 1 NADH(P)-binding Epimerase PF01370.16 gi|284166891|ref|YP_003405170.1| - 0.014 14.7 0.0 0.025 14.0 0.0 1.4 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Acetyltransf_1 PF00583.19 gi|284166892|ref|YP_003405171.1| - 1.6e-13 50.4 0.0 2.4e-13 49.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|284166892|ref|YP_003405171.1| - 1.4e-09 37.9 0.0 1.9e-09 37.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|284166892|ref|YP_003405171.1| - 2.3e-09 37.3 0.8 5.4e-09 36.1 0.6 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|284166892|ref|YP_003405171.1| - 3.5e-08 33.5 0.1 4.3e-07 29.9 0.1 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|284166892|ref|YP_003405171.1| - 3.9e-06 27.0 0.0 4.7e-06 26.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|284166892|ref|YP_003405171.1| - 4.1e-05 23.2 0.0 6.1e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_6 PF13480.1 gi|284166892|ref|YP_003405171.1| - 0.00014 21.8 0.5 0.00018 21.4 0.3 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|284166892|ref|YP_003405171.1| - 0.0029 17.4 0.9 0.015 15.1 0.6 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain MDMPI_C PF07398.6 gi|284166892|ref|YP_003405171.1| - 0.066 13.7 0.6 0.066 13.7 0.4 1.8 2 0 0 2 2 2 0 MDMPI C-terminal domain SUI1 PF01253.17 gi|284166893|ref|YP_003405172.1| - 1.5e-21 76.0 0.0 2e-21 75.5 0.0 1.2 1 0 0 1 1 1 1 Translation initiation factor SUI1 YihI PF04220.7 gi|284166893|ref|YP_003405172.1| - 0.079 12.2 2.0 0.1 11.9 1.4 1.2 1 0 0 1 1 1 0 Der GTPase activator (YihI) ERCC4 PF02732.10 gi|284166893|ref|YP_003405172.1| - 0.12 12.1 0.0 0.17 11.6 0.0 1.3 1 1 0 1 1 1 0 ERCC4 domain DUF192 PF02643.10 gi|284166894|ref|YP_003405173.1| - 1.8e-24 85.4 0.0 2.6e-24 84.9 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 Penicil_amidase PF01804.13 gi|284166894|ref|YP_003405173.1| - 0.0076 15.3 0.2 0.013 14.5 0.2 1.3 1 0 0 1 1 1 1 Penicillin amidase PRC PF05239.11 gi|284166894|ref|YP_003405173.1| - 0.11 12.3 0.0 0.21 11.4 0.0 1.6 1 0 0 1 1 1 0 PRC-barrel domain TAT_signal PF10518.4 gi|284166894|ref|YP_003405173.1| - 2.8 8.1 4.7 0.38 10.8 0.6 1.6 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence UvrC_HhH_N PF08459.6 gi|284166895|ref|YP_003405174.1| - 1.3e-42 145.0 0.0 2.4e-42 144.1 0.0 1.5 1 0 0 1 1 1 1 UvrC Helix-hairpin-helix N-terminal HHH PF00633.18 gi|284166895|ref|YP_003405174.1| - 3.4e-11 42.1 2.4 5.1e-08 32.1 0.1 2.9 3 0 0 3 3 3 2 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|284166895|ref|YP_003405174.1| - 2.5e-10 40.3 0.1 7e-10 38.9 0.1 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|284166895|ref|YP_003405174.1| - 8.5e-10 38.3 0.0 2.6e-09 36.8 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif UVR PF02151.14 gi|284166895|ref|YP_003405174.1| - 2e-09 36.6 1.9 5.7e-09 35.1 1.3 1.7 1 0 0 1 1 1 1 UvrB/uvrC motif GIY-YIG PF01541.19 gi|284166895|ref|YP_003405174.1| - 4.6e-08 33.3 0.0 8.4e-08 32.4 0.0 1.4 1 0 0 1 1 1 1 GIY-YIG catalytic domain 5_3_exonuc PF01367.15 gi|284166895|ref|YP_003405174.1| - 0.00012 22.2 0.0 0.044 14.0 0.0 2.6 1 1 1 2 2 2 2 5'-3' exonuclease, C-terminal SAM fold GHMP_kinases_C PF08544.8 gi|284166895|ref|YP_003405174.1| - 0.0049 17.0 0.6 0.023 14.8 0.1 2.3 2 0 0 2 2 2 1 GHMP kinases C terminal HHH_3 PF12836.2 gi|284166895|ref|YP_003405174.1| - 0.076 12.9 0.0 0.55 10.2 0.0 2.3 1 1 0 1 1 1 0 Helix-hairpin-helix motif FbpA PF05833.6 gi|284166895|ref|YP_003405174.1| - 0.11 10.9 0.0 0.18 10.2 0.0 1.3 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) Claudin_2 PF13903.1 gi|284166896|ref|YP_003405175.1| - 0.011 15.3 0.0 0.014 15.0 0.0 1.1 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction ABC_tran PF00005.22 gi|284166898|ref|YP_003405177.1| - 1.5e-29 102.9 0.0 2.7e-29 102.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284166898|ref|YP_003405177.1| - 7e-13 49.1 0.0 4.8e-08 33.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_30 PF13604.1 gi|284166898|ref|YP_003405177.1| - 0.00016 21.2 0.0 0.00039 20.0 0.0 1.6 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|284166898|ref|YP_003405177.1| - 0.00049 19.3 0.0 0.21 10.7 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain DUF4162 PF13732.1 gi|284166898|ref|YP_003405177.1| - 0.0012 19.2 0.0 0.0032 17.9 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) DUF258 PF03193.11 gi|284166898|ref|YP_003405177.1| - 0.0024 17.0 0.0 0.0039 16.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|284166898|ref|YP_003405177.1| - 0.0026 17.2 0.0 0.005 16.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ArgK PF03308.11 gi|284166898|ref|YP_003405177.1| - 0.003 16.3 0.5 0.0066 15.2 0.0 1.7 2 0 0 2 2 2 1 ArgK protein AAA_23 PF13476.1 gi|284166898|ref|YP_003405177.1| - 0.0036 17.6 0.1 0.006 16.9 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|284166898|ref|YP_003405177.1| - 0.017 15.0 0.0 0.045 13.7 0.0 1.8 1 1 1 2 2 2 0 AAA ATPase domain IstB_IS21 PF01695.12 gi|284166898|ref|YP_003405177.1| - 0.02 14.3 0.0 1.4 8.2 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein SbcCD_C PF13558.1 gi|284166898|ref|YP_003405177.1| - 0.025 14.4 0.0 0.056 13.3 0.0 1.6 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|284166898|ref|YP_003405177.1| - 0.041 13.2 0.6 0.55 9.6 0.1 2.7 1 1 1 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|284166898|ref|YP_003405177.1| - 0.049 13.0 0.1 0.4 10.0 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain MMR_HSR1 PF01926.18 gi|284166898|ref|YP_003405177.1| - 0.11 12.4 0.1 0.26 11.2 0.1 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase ABC2_membrane_2 PF12679.2 gi|284166899|ref|YP_003405178.1| - 8.7e-50 169.1 13.7 9.9e-50 168.9 9.5 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|284166899|ref|YP_003405178.1| - 4.9e-20 71.6 10.2 4.9e-20 71.6 7.1 2.0 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|284166899|ref|YP_003405178.1| - 3.2e-09 36.2 18.7 3.2e-09 36.2 13.0 2.4 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|284166899|ref|YP_003405178.1| - 5.5e-06 25.6 14.0 1.2e-05 24.5 9.7 1.7 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_5 PF13346.1 gi|284166899|ref|YP_003405178.1| - 0.0001 21.6 13.5 0.0001 21.6 9.4 2.3 2 1 0 2 2 2 1 ABC-2 family transporter protein CcmB PF03379.8 gi|284166899|ref|YP_003405178.1| - 0.028 13.6 7.6 0.094 11.9 5.3 1.9 1 1 0 1 1 1 0 CcmB protein DUF2512 PF10710.4 gi|284166899|ref|YP_003405178.1| - 0.3 10.5 10.0 0.7 9.3 6.9 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2512) 7tm_7 PF08395.7 gi|284166899|ref|YP_003405178.1| - 0.57 9.1 8.1 1.1 8.2 4.3 2.2 1 1 0 1 1 1 0 7tm Chemosensory receptor BphX PF06139.7 gi|284166899|ref|YP_003405178.1| - 0.71 9.4 9.4 0.2 11.2 3.5 2.2 2 0 0 2 2 2 0 BphX-like Cad PF03596.8 gi|284166899|ref|YP_003405178.1| - 0.94 9.1 9.5 10 5.7 4.3 2.8 1 1 1 2 2 2 0 Cadmium resistance transporter ArsA_ATPase PF02374.10 gi|284166900|ref|YP_003405179.1| - 7.4e-84 281.3 0.0 4.4e-83 278.8 0.0 1.8 1 1 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.18 gi|284166900|ref|YP_003405179.1| - 2.4e-12 46.6 0.1 2.5e-10 40.0 0.0 2.3 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_25 PF13481.1 gi|284166900|ref|YP_003405179.1| - 1.8e-06 27.5 2.5 0.051 12.9 0.0 3.2 2 1 0 2 2 2 2 AAA domain AAA_31 PF13614.1 gi|284166900|ref|YP_003405179.1| - 1.2e-05 25.2 0.2 0.00012 22.0 0.0 2.6 4 0 0 4 4 4 1 AAA domain Fer4_NifH PF00142.13 gi|284166900|ref|YP_003405179.1| - 0.0004 19.6 0.0 0.001 18.2 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family YhjQ PF06564.7 gi|284166900|ref|YP_003405179.1| - 0.0026 17.1 0.0 0.0064 15.8 0.0 1.6 2 0 0 2 2 2 1 YhjQ protein SRP54 PF00448.17 gi|284166900|ref|YP_003405179.1| - 0.0058 16.0 0.2 0.09 12.2 0.1 2.1 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_19 PF13245.1 gi|284166900|ref|YP_003405179.1| - 0.014 15.0 1.7 0.093 12.4 0.8 2.5 2 0 0 2 2 2 0 Part of AAA domain MipZ PF09140.6 gi|284166900|ref|YP_003405179.1| - 0.018 14.1 0.1 0.34 9.9 0.0 2.6 3 0 0 3 3 3 0 ATPase MipZ PhoH PF02562.11 gi|284166900|ref|YP_003405179.1| - 0.029 13.6 0.0 0.17 11.0 0.0 2.0 2 0 0 2 2 2 0 PhoH-like protein ATP_bind_1 PF03029.12 gi|284166900|ref|YP_003405179.1| - 0.043 13.3 0.1 0.21 11.1 0.0 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_10 PF12846.2 gi|284166900|ref|YP_003405179.1| - 0.043 13.2 0.1 0.087 12.2 0.1 1.7 1 1 0 1 1 1 0 AAA-like domain IstB_IS21 PF01695.12 gi|284166900|ref|YP_003405179.1| - 0.078 12.3 0.3 0.42 10.0 0.1 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein Nudix_N PF12535.3 gi|284166900|ref|YP_003405179.1| - 0.12 11.8 0.4 0.28 10.6 0.3 1.7 1 0 0 1 1 1 0 Hydrolase of X-linked nucleoside diphosphate N terminal APS_kinase PF01583.15 gi|284166900|ref|YP_003405179.1| - 0.13 11.9 0.4 1.4 8.5 0.0 2.4 3 0 0 3 3 3 0 Adenylylsulphate kinase DNA_ligase_aden PF01653.13 gi|284166901|ref|YP_003405180.1| - 1.3e-106 356.1 0.0 1.8e-106 355.6 0.0 1.2 1 0 0 1 1 1 1 NAD-dependent DNA ligase adenylation domain DNA_ligase_OB PF03120.11 gi|284166901|ref|YP_003405180.1| - 9.3e-30 102.1 1.8 1.9e-29 101.1 1.3 1.5 1 0 0 1 1 1 1 NAD-dependent DNA ligase OB-fold domain HHH_5 PF14520.1 gi|284166901|ref|YP_003405180.1| - 4.7e-21 74.7 2.7 2.8e-10 40.2 0.6 3.2 2 1 1 3 3 3 3 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|284166901|ref|YP_003405180.1| - 1.7e-20 72.6 0.4 1.2e-17 63.5 0.0 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix motif BRCT PF00533.21 gi|284166901|ref|YP_003405180.1| - 7.6e-13 48.4 0.0 1.5e-12 47.5 0.0 1.5 1 0 0 1 1 1 1 BRCA1 C Terminus (BRCT) domain HHH PF00633.18 gi|284166901|ref|YP_003405180.1| - 6.3e-08 31.8 0.1 0.062 13.0 0.0 4.5 4 0 0 4 4 4 2 Helix-hairpin-helix motif DNA_ligase_ZBD PF03119.11 gi|284166901|ref|YP_003405180.1| - 2.3e-05 24.0 2.3 2.3e-05 24.0 1.6 2.4 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain HHH_8 PF14716.1 gi|284166901|ref|YP_003405180.1| - 0.0045 17.1 0.0 4.6 7.5 0.0 3.2 2 1 0 2 2 2 2 Helix-hairpin-helix domain CorC_HlyC PF03471.12 gi|284166901|ref|YP_003405180.1| - 0.021 14.5 0.1 0.31 10.8 0.0 2.7 2 0 0 2 2 2 0 Transporter associated domain 5_3_exonuc PF01367.15 gi|284166901|ref|YP_003405180.1| - 0.043 14.0 0.0 0.19 11.9 0.0 2.1 2 1 0 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold Fer2 PF00111.22 gi|284166902|ref|YP_003405181.1| - 4.7e-14 51.9 0.6 1.9e-13 49.9 0.4 1.9 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain SBP56 PF05694.6 gi|284166903|ref|YP_003405182.1| - 1.3e-193 643.6 0.1 1.5e-193 643.4 0.1 1.0 1 0 0 1 1 1 1 56kDa selenium binding protein (SBP56) Lactonase PF10282.4 gi|284166903|ref|YP_003405182.1| - 0.015 14.3 0.0 0.098 11.7 0.0 2.1 2 1 0 2 2 2 0 Lactonase, 7-bladed beta-propeller Fer2 PF00111.22 gi|284166904|ref|YP_003405183.1| - 3e-12 46.1 1.5 5e-11 42.1 1.0 2.1 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|284166904|ref|YP_003405183.1| - 0.081 12.7 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Na_H_antiporter PF03553.9 gi|284166905|ref|YP_003405184.1| - 1.2e-55 188.6 41.4 3.9e-53 180.4 14.4 2.1 1 1 1 2 2 2 2 Na+/H+ antiporter family RIO1 PF01163.17 gi|284166906|ref|YP_003405185.1| - 2e-60 203.3 0.1 9.4e-60 201.1 0.0 1.8 2 0 0 2 2 2 1 RIO1 family APH PF01636.18 gi|284166906|ref|YP_003405185.1| - 2.5e-10 40.5 0.1 5.6e-06 26.2 0.0 2.7 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.20 gi|284166906|ref|YP_003405185.1| - 4.2e-05 22.8 0.0 8.6e-05 21.8 0.0 1.4 1 1 0 1 1 1 1 Protein kinase domain Kdo PF06293.9 gi|284166906|ref|YP_003405185.1| - 0.0001 21.4 0.1 0.0022 17.0 0.0 2.3 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Choline_kinase PF01633.15 gi|284166906|ref|YP_003405185.1| - 0.092 12.3 0.0 0.19 11.2 0.0 1.8 1 1 0 1 1 1 0 Choline/ethanolamine kinase Fructosamin_kin PF03881.9 gi|284166906|ref|YP_003405185.1| - 0.1 11.5 0.0 6 5.7 0.0 2.2 1 1 1 2 2 2 0 Fructosamine kinase VQ PF05678.9 gi|284166906|ref|YP_003405185.1| - 0.14 11.2 0.0 0.25 10.3 0.0 1.5 1 0 0 1 1 1 0 VQ motif tRNA-synt_1b PF00579.20 gi|284166907|ref|YP_003405186.1| - 1.6e-20 73.4 0.0 5.1e-20 71.7 0.0 1.7 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) Metallophos_2 PF12850.2 gi|284166908|ref|YP_003405187.1| - 2e-28 99.1 2.5 2.3e-28 98.9 1.7 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.1 gi|284166908|ref|YP_003405187.1| - 0.0017 17.5 0.2 0.34 10.0 0.0 2.1 2 0 0 2 2 2 2 Metallophosphoesterase, calcineurin superfamily Metallophos PF00149.23 gi|284166908|ref|YP_003405187.1| - 0.0051 16.2 0.1 0.0051 16.2 0.0 2.6 2 1 0 2 2 2 1 Calcineurin-like phosphoesterase DUF2188 PF09954.4 gi|284166908|ref|YP_003405187.1| - 0.024 14.5 1.2 0.16 11.9 0.0 2.5 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2188) HTH_20 PF12840.2 gi|284166909|ref|YP_003405188.1| - 0.13 12.0 0.1 0.23 11.2 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain PAC2 PF09754.4 gi|284166910|ref|YP_003405189.1| - 2e-27 96.5 0.0 2.2e-27 96.3 0.0 1.0 1 0 0 1 1 1 1 PAC2 family KH_1 PF00013.24 gi|284166911|ref|YP_003405190.1| - 9.8e-18 63.5 4.7 5.3e-09 35.5 0.4 2.2 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|284166911|ref|YP_003405190.1| - 8.9e-09 34.8 2.4 0.00012 21.6 0.1 2.4 2 0 0 2 2 2 2 KH domain KH_2 PF07650.12 gi|284166911|ref|YP_003405190.1| - 2.8e-06 26.7 1.4 0.002 17.6 0.1 2.5 2 0 0 2 2 2 2 KH domain KH_4 PF13083.1 gi|284166911|ref|YP_003405190.1| - 0.014 14.9 1.8 3.9 7.1 0.2 2.9 2 1 1 3 3 3 0 KH domain DUF1177 PF06675.6 gi|284166912|ref|YP_003405191.1| - 0.037 12.6 0.2 0.037 12.6 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1177) FIST PF08495.5 gi|284166913|ref|YP_003405192.1| - 6.5e-38 129.8 0.3 6.9e-37 126.5 0.1 2.5 3 0 0 3 3 3 1 FIST N domain FIST_C PF10442.4 gi|284166913|ref|YP_003405192.1| - 7.8e-30 103.5 0.1 4.6e-27 94.6 0.0 2.4 2 0 0 2 2 2 2 FIST C domain HATPase_c PF02518.21 gi|284166914|ref|YP_003405193.1| - 2.7e-16 59.2 2.1 1.4e-15 56.9 0.4 2.7 2 1 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|284166914|ref|YP_003405193.1| - 1.9e-12 46.9 0.3 4.3e-12 45.8 0.1 1.8 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.1 gi|284166914|ref|YP_003405193.1| - 0.00012 21.8 0.3 0.00074 19.3 0.2 2.4 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain HTH_23 PF13384.1 gi|284166914|ref|YP_003405193.1| - 0.015 14.8 0.0 0.039 13.6 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_29 PF13551.1 gi|284166914|ref|YP_003405193.1| - 0.017 15.2 0.0 0.055 13.6 0.0 1.9 1 0 0 1 1 1 0 Winged helix-turn helix HTH_28 PF13518.1 gi|284166914|ref|YP_003405193.1| - 0.021 14.8 0.0 0.05 13.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|284166914|ref|YP_003405193.1| - 0.031 13.7 0.0 0.071 12.5 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 WD40_alt PF14077.1 gi|284166914|ref|YP_003405193.1| - 0.083 12.5 0.3 0.17 11.5 0.2 1.4 1 0 0 1 1 1 0 Alternative WD40 repeat motif HTH_Tnp_1 PF01527.15 gi|284166914|ref|YP_003405193.1| - 0.088 12.7 0.0 0.22 11.4 0.0 1.7 1 0 0 1 1 1 0 Transposase Cpn60_TCP1 PF00118.19 gi|284166915|ref|YP_003405194.1| - 1.3e-164 548.4 5.7 1.5e-164 548.2 4.0 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family P-II PF00543.17 gi|284166915|ref|YP_003405194.1| - 0.3 11.5 3.6 9.6 6.7 0.0 3.4 3 0 0 3 3 3 0 Nitrogen regulatory protein P-II OCD_Mu_crystall PF02423.10 gi|284166916|ref|YP_003405195.1| - 5.4e-93 311.1 0.4 6.1e-93 311.0 0.3 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family GFO_IDH_MocA PF01408.17 gi|284166916|ref|YP_003405195.1| - 0.074 13.5 0.0 0.14 12.7 0.0 1.6 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Sugar_tr PF00083.19 gi|284166917|ref|YP_003405196.1| - 2.4e-131 438.4 24.0 2.8e-131 438.2 16.6 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|284166917|ref|YP_003405196.1| - 6.5e-41 140.2 58.8 1.1e-37 129.6 25.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily TRI12 PF06609.8 gi|284166917|ref|YP_003405196.1| - 3.9e-09 35.2 12.2 2.9e-08 32.3 1.4 2.1 2 0 0 2 2 2 2 Fungal trichothecene efflux pump (TRI12) MFS_2 PF13347.1 gi|284166917|ref|YP_003405196.1| - 2.6e-07 29.3 35.0 0.00075 17.9 2.5 4.0 3 1 1 4 4 4 3 MFS/sugar transport protein MFS_3 PF05977.8 gi|284166917|ref|YP_003405196.1| - 0.00064 17.9 2.2 0.00064 17.9 1.5 2.4 2 0 0 2 2 2 1 Transmembrane secretion effector Gly-zipper_YMGG PF13441.1 gi|284166917|ref|YP_003405196.1| - 0.0043 16.5 2.6 0.025 14.1 1.8 2.3 1 0 0 1 1 1 1 YMGG-like Gly-zipper Gly-zipper_Omp PF13488.1 gi|284166917|ref|YP_003405196.1| - 0.005 16.4 4.6 0.028 14.0 3.2 2.3 1 0 0 1 1 1 1 Glycine zipper Rick_17kDa_Anti PF05433.10 gi|284166917|ref|YP_003405196.1| - 0.0089 15.6 4.1 0.036 13.7 2.9 2.0 1 0 0 1 1 1 1 Glycine zipper 2TM domain OATP PF03137.15 gi|284166917|ref|YP_003405196.1| - 0.031 12.3 6.7 0.33 8.9 0.0 2.6 1 1 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family MFS_1_like PF12832.2 gi|284166917|ref|YP_003405196.1| - 0.18 11.6 11.7 0.22 11.3 0.1 3.8 5 0 0 5 5 5 0 MFS_1 like family Gly-zipper_OmpA PF13436.1 gi|284166917|ref|YP_003405196.1| - 1 9.0 3.3 1.1 8.9 0.3 2.3 3 0 0 3 3 3 0 Glycine-zipper containing OmpA-like membrane domain DUF2071 PF09844.4 gi|284166918|ref|YP_003405197.1| - 4.6e-53 179.8 0.0 5.9e-53 179.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (COG2071) ADC PF06314.6 gi|284166918|ref|YP_003405197.1| - 0.0024 17.2 0.0 0.004 16.5 0.0 1.4 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) Bac_rhodopsin PF01036.13 gi|284166919|ref|YP_003405198.1| - 4.6e-28 98.0 19.2 5.9e-28 97.6 13.3 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein Wzy_C PF04932.10 gi|284166919|ref|YP_003405198.1| - 8.3 6.1 14.0 1.7 8.4 4.2 2.3 1 1 1 2 2 2 0 O-Antigen ligase MCPsignal PF00015.16 gi|284166920|ref|YP_003405199.1| - 2.3e-40 138.4 75.0 4.6e-38 130.9 30.0 3.4 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|284166920|ref|YP_003405199.1| - 6.5e-11 42.2 0.5 6.5e-11 42.2 0.3 6.6 6 3 1 7 7 7 2 HAMP domain IncA PF04156.9 gi|284166920|ref|YP_003405199.1| - 7.9e-07 28.8 49.7 0.0002 20.9 0.7 5.1 2 1 3 5 5 5 4 IncA protein Laminin_I PF06008.9 gi|284166920|ref|YP_003405199.1| - 0.01 15.2 60.7 0.2 10.9 2.0 5.3 1 1 4 5 5 5 3 Laminin Domain I Laminin_II PF06009.7 gi|284166920|ref|YP_003405199.1| - 0.012 15.3 49.1 0.088 12.5 6.1 5.2 3 2 1 5 5 5 0 Laminin Domain II DUF948 PF06103.6 gi|284166920|ref|YP_003405199.1| - 0.021 14.6 44.2 0.041 13.7 2.8 7.6 3 1 4 7 7 7 0 Bacterial protein of unknown function (DUF948) AAA_13 PF13166.1 gi|284166920|ref|YP_003405199.1| - 0.048 12.1 41.5 0.21 9.9 14.0 2.3 1 1 1 2 2 2 0 AAA domain Spc7 PF08317.6 gi|284166920|ref|YP_003405199.1| - 0.083 11.5 41.2 0.42 9.2 5.2 4.0 1 1 2 4 4 4 0 Spc7 kinetochore protein Fib_alpha PF08702.5 gi|284166920|ref|YP_003405199.1| - 0.32 11.1 30.9 0.65 10.1 3.4 4.6 1 1 2 4 4 4 0 Fibrinogen alpha/beta chain family Reo_sigmaC PF04582.7 gi|284166920|ref|YP_003405199.1| - 0.43 9.7 39.3 0.18 10.9 8.6 3.7 1 1 1 3 3 3 0 Reovirus sigma C capsid protein DUF1664 PF07889.7 gi|284166920|ref|YP_003405199.1| - 0.74 9.6 37.1 0.18 11.6 3.3 5.9 3 2 3 6 6 6 0 Protein of unknown function (DUF1664) BLOC1_2 PF10046.4 gi|284166920|ref|YP_003405199.1| - 1 9.5 35.1 1.3 9.2 3.0 5.6 3 2 2 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF489 PF04356.7 gi|284166920|ref|YP_003405199.1| - 3.2 7.2 18.5 0.04 13.5 3.3 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF489) DASH_Duo1 PF08651.5 gi|284166920|ref|YP_003405199.1| - 3.2 7.3 19.5 8.6 6.0 0.4 5.3 4 1 1 5 5 5 0 DASH complex subunit Duo1 IFT57 PF10498.4 gi|284166920|ref|YP_003405199.1| - 4.4 5.9 38.8 8.7 4.9 16.3 3.0 1 1 2 3 3 3 0 Intra-flagellar transport protein 57 Syntaxin PF00804.20 gi|284166920|ref|YP_003405199.1| - 5.8 7.1 41.9 0.063 13.4 2.8 5.0 1 1 2 3 3 2 0 Syntaxin EzrA PF06160.7 gi|284166920|ref|YP_003405199.1| - 6.2 4.8 41.2 1.3 7.0 6.7 2.4 1 1 1 2 2 2 0 Septation ring formation regulator, EzrA tRNA-synt_1 PF00133.17 gi|284166921|ref|YP_003405200.1| - 1.8e-74 250.8 1.6 7.2e-28 96.9 0.0 4.9 1 1 3 4 4 4 4 tRNA synthetases class I (I, L, M and V) tRNA-synt_1_2 PF13603.1 gi|284166921|ref|YP_003405200.1| - 4.1e-56 189.2 0.0 7e-56 188.4 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1g PF09334.6 gi|284166921|ref|YP_003405200.1| - 1.9e-41 142.0 0.1 8.9e-25 87.1 0.0 4.0 3 1 0 3 3 3 3 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|284166921|ref|YP_003405200.1| - 4.3e-16 59.0 0.0 8.4e-16 58.0 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|284166921|ref|YP_003405200.1| - 6.3e-09 35.3 0.0 2.9e-06 26.6 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|284166921|ref|YP_003405200.1| - 1.1e-05 24.2 0.0 0.002 16.9 0.0 2.5 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|284166921|ref|YP_003405200.1| - 0.0064 15.3 0.0 0.48 9.1 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (R) DZR PF12773.2 gi|284166921|ref|YP_003405200.1| - 0.021 14.6 6.9 0.058 13.2 0.3 2.6 2 1 0 2 2 2 0 Double zinc ribbon DNA_ligase_ZBD PF03119.11 gi|284166921|ref|YP_003405200.1| - 0.051 13.2 3.2 0.24 11.1 0.0 3.0 2 1 1 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain tRNA-synt_1b PF00579.20 gi|284166921|ref|YP_003405200.1| - 0.1 11.6 0.1 0.32 10.0 0.0 1.7 2 0 0 2 2 2 0 tRNA synthetases class I (W and Y) TF_Zn_Ribbon PF08271.7 gi|284166921|ref|YP_003405200.1| - 0.73 9.2 9.2 8.5 5.7 0.4 3.6 3 0 0 3 3 3 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|284166921|ref|YP_003405200.1| - 0.77 9.7 4.6 2.6 8.0 0.2 3.2 3 0 0 3 3 3 0 Zinc ribbon domain HSP20 PF00011.16 gi|284166923|ref|YP_003405202.1| - 1.7e-17 63.1 0.0 2e-17 62.8 0.0 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family PIH1 PF08190.7 gi|284166923|ref|YP_003405202.1| - 0.037 13.4 0.0 0.046 13.1 0.0 1.1 1 0 0 1 1 1 0 pre-RNA processing PIH1/Nop17 AhpC-TSA PF00578.16 gi|284166924|ref|YP_003405203.1| - 6.5e-31 106.6 0.0 8.5e-31 106.2 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|284166924|ref|YP_003405203.1| - 4e-18 65.3 0.0 4.7e-18 65.1 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|284166924|ref|YP_003405203.1| - 3.7e-06 26.8 0.0 6.8e-06 25.9 0.0 1.4 1 1 0 1 1 1 1 AhpC/TSA antioxidant enzyme DUF899 PF05988.7 gi|284166924|ref|YP_003405203.1| - 8.2e-05 22.1 0.0 0.0001 21.8 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) CBS PF00571.23 gi|284166925|ref|YP_003405204.1| - 7.3e-28 96.0 1.2 1.8e-13 50.0 0.1 2.2 2 0 0 2 2 2 2 CBS domain PRC PF05239.11 gi|284166925|ref|YP_003405204.1| - 0.072 12.9 1.8 12 5.8 0.0 3.0 2 1 1 3 3 3 0 PRC-barrel domain HTH_20 PF12840.2 gi|284166926|ref|YP_003405205.1| - 0.042 13.6 0.4 0.067 13.0 0.2 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.7 gi|284166927|ref|YP_003405206.1| - 3.4e-14 52.1 0.1 6.3e-14 51.3 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|284166927|ref|YP_003405206.1| - 0.0041 16.7 0.2 0.0089 15.6 0.1 1.5 1 0 0 1 1 1 1 MarR family Sigma70_r3 PF04539.11 gi|284166927|ref|YP_003405206.1| - 0.017 15.0 0.2 0.043 13.7 0.1 1.7 2 0 0 2 2 2 0 Sigma-70 region 3 HTH_29 PF13551.1 gi|284166927|ref|YP_003405206.1| - 0.024 14.8 0.1 0.041 14.0 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn helix Sigma70_r4 PF04545.11 gi|284166927|ref|YP_003405206.1| - 0.036 13.3 0.0 0.081 12.2 0.0 1.6 1 1 0 1 1 1 0 Sigma-70, region 4 Peptidase_M50 PF02163.17 gi|284166928|ref|YP_003405207.1| - 4e-21 74.8 14.2 7.9e-14 51.0 5.4 2.3 1 1 1 2 2 2 2 Peptidase family M50 CBS PF00571.23 gi|284166928|ref|YP_003405207.1| - 7.1e-15 54.5 2.4 9.2e-08 31.7 0.0 3.0 3 0 0 3 3 3 2 CBS domain Peptidase_M50B PF13398.1 gi|284166928|ref|YP_003405207.1| - 2.9e-06 26.8 3.8 2.9e-06 26.8 2.6 2.3 1 1 0 2 2 2 1 Peptidase M50B-like Peptidase_MA_2 PF13485.1 gi|284166928|ref|YP_003405207.1| - 0.0026 17.7 0.2 0.0049 16.9 0.1 1.4 1 0 0 1 1 1 1 Peptidase MA superfamily PTSIIA_gutA PF03829.8 gi|284166928|ref|YP_003405207.1| - 0.15 11.7 0.0 12 5.6 0.0 2.2 2 0 0 2 2 2 0 PTS system glucitol/sorbitol-specific IIA component PDT PF00800.13 gi|284166929|ref|YP_003405208.1| - 1.6e-48 164.6 0.1 2.1e-48 164.3 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.20 gi|284166929|ref|YP_003405208.1| - 2.1e-07 30.2 0.0 6.3e-07 28.7 0.0 1.8 1 0 0 1 1 1 1 ACT domain SnoaL_2 PF12680.2 gi|284166929|ref|YP_003405208.1| - 0.12 12.7 0.4 1.7 9.0 0.1 2.6 2 1 0 3 3 3 0 SnoaL-like domain Bac_globin PF01152.16 gi|284166930|ref|YP_003405209.1| - 1.2e-27 96.2 0.0 1.3e-27 96.1 0.0 1.0 1 0 0 1 1 1 1 Bacterial-like globin Protoglobin PF11563.3 gi|284166930|ref|YP_003405209.1| - 2e-05 24.3 0.0 5.3e-05 22.9 0.0 1.6 2 0 0 2 2 2 1 Protoglobin Porphobil_deam PF01379.15 gi|284166931|ref|YP_003405210.1| - 8.6e-63 211.1 0.0 6.6e-52 175.5 0.0 2.1 2 0 0 2 2 2 2 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.10 gi|284166931|ref|YP_003405210.1| - 1.1e-08 35.0 0.1 2.9e-08 33.6 0.1 1.7 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain SBP_bac_11 PF13531.1 gi|284166931|ref|YP_003405210.1| - 0.16 11.5 1.9 0.45 10.1 0.0 2.6 2 1 0 2 2 2 0 Bacterial extracellular solute-binding protein TP_methylase PF00590.15 gi|284166932|ref|YP_003405211.1| - 4.7e-56 189.8 1.1 5.5e-56 189.5 0.8 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases HEM4 PF02602.10 gi|284166933|ref|YP_003405212.1| - 1.5e-44 151.9 4.4 1.8e-44 151.7 3.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD HHH_5 PF14520.1 gi|284166933|ref|YP_003405212.1| - 0.057 13.5 0.0 3.3 7.9 0.0 2.6 1 1 0 1 1 1 0 Helix-hairpin-helix domain UPF0016 PF01169.14 gi|284166934|ref|YP_003405213.1| - 0.022 14.8 1.3 0.022 14.8 0.9 1.9 2 0 0 2 2 2 0 Uncharacterized protein family UPF0016 BofA PF07441.6 gi|284166934|ref|YP_003405213.1| - 0.043 13.8 9.3 0.077 13.0 0.8 2.3 1 1 1 2 2 2 0 SigmaK-factor processing regulatory protein BofA PEMT PF04191.8 gi|284166934|ref|YP_003405213.1| - 0.1 12.6 3.2 2.6 8.2 0.3 2.0 1 1 1 2 2 2 0 Phospholipid methyltransferase DHH PF01368.15 gi|284166935|ref|YP_003405214.1| - 1.4e-11 44.2 0.1 2.1e-11 43.6 0.0 1.3 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|284166935|ref|YP_003405214.1| - 2e-10 40.1 2.0 4.5e-10 39.0 1.4 1.7 1 0 0 1 1 1 1 DHHA1 domain PHP_C PF13263.1 gi|284166936|ref|YP_003405215.1| - 2.6e-22 78.0 0.3 1.9e-21 75.3 0.1 2.1 2 0 0 2 2 2 1 PHP-associated PHP PF02811.14 gi|284166936|ref|YP_003405215.1| - 1.6e-15 57.2 0.0 5.6e-15 55.5 0.0 1.9 1 1 0 1 1 1 1 PHP domain DUF217 PF02697.9 gi|284166940|ref|YP_003405219.1| - 0.078 13.2 0.0 0.23 11.7 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized ACR, COG1753 EST1 PF10374.4 gi|284166940|ref|YP_003405219.1| - 0.11 12.4 0.0 0.12 12.3 0.0 1.1 1 0 0 1 1 1 0 Telomerase activating protein Est1 NifU PF01106.12 gi|284166941|ref|YP_003405220.1| - 1.3e-10 40.8 0.8 1.9e-10 40.3 0.1 1.7 1 1 1 2 2 2 1 NifU-like domain DUF1272 PF06906.6 gi|284166942|ref|YP_003405221.1| - 0.0021 17.8 0.8 0.0022 17.7 0.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) Zn-ribbon_8 PF09723.5 gi|284166942|ref|YP_003405221.1| - 0.086 12.8 2.5 0.92 9.5 1.7 2.1 1 1 0 1 1 1 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|284166942|ref|YP_003405221.1| - 0.099 12.3 0.6 0.12 12.0 0.4 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-UBR PF02207.15 gi|284166942|ref|YP_003405221.1| - 0.16 11.7 2.6 4 7.2 0.1 2.0 1 1 1 2 2 2 0 Putative zinc finger in N-recognin (UBR box) ADK_lid PF05191.9 gi|284166942|ref|YP_003405221.1| - 0.2 11.3 1.4 0.67 9.6 1.0 1.8 1 1 0 1 1 1 0 Adenylate kinase, active site lid zf-CSL PF05207.8 gi|284166942|ref|YP_003405221.1| - 0.66 9.5 3.0 5.8 6.5 0.1 2.1 1 1 1 2 2 2 0 CSL zinc finger ApbA_C PF08546.6 gi|284166943|ref|YP_003405222.1| - 5e-36 123.4 0.7 8e-36 122.7 0.5 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.11 gi|284166943|ref|YP_003405222.1| - 3.6e-29 101.1 0.2 6.2e-29 100.3 0.1 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Glyco_trans_4_4 PF13579.1 gi|284166943|ref|YP_003405222.1| - 0.012 15.7 0.5 0.012 15.7 0.4 2.3 2 1 0 2 2 2 0 Glycosyl transferase 4-like domain HypA PF01155.14 gi|284166944|ref|YP_003405223.1| - 0.0023 17.6 0.3 0.0032 17.1 0.1 1.4 2 0 0 2 2 2 1 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|284166944|ref|YP_003405223.1| - 0.0075 15.4 0.4 0.19 10.9 0.1 2.3 2 0 0 2 2 2 1 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|284166944|ref|YP_003405223.1| - 0.015 15.2 0.7 0.029 14.3 0.5 1.5 1 0 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|284166944|ref|YP_003405223.1| - 0.06 12.8 3.1 0.36 10.3 0.6 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|284166944|ref|YP_003405223.1| - 0.082 12.3 1.6 0.13 11.7 1.1 1.3 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Rubredoxin PF00301.15 gi|284166944|ref|YP_003405223.1| - 0.1 12.5 3.1 14 5.6 0.0 2.6 2 1 1 3 3 3 0 Rubredoxin zf-ISL3 PF14690.1 gi|284166944|ref|YP_003405223.1| - 0.19 11.7 0.6 3.9 7.5 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DZR PF12773.2 gi|284166944|ref|YP_003405223.1| - 0.2 11.5 1.8 0.68 9.7 1.3 1.8 1 1 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|284166944|ref|YP_003405223.1| - 0.53 9.6 4.5 2.3 7.5 0.2 2.6 3 0 0 3 3 3 0 TFIIB zinc-binding Abhydrolase_6 PF12697.2 gi|284166945|ref|YP_003405224.1| - 3.6e-43 148.0 0.8 4.4e-43 147.7 0.5 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|284166945|ref|YP_003405224.1| - 7.3e-23 80.9 0.0 3.9e-22 78.5 0.0 1.9 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|284166945|ref|YP_003405224.1| - 7e-21 74.8 0.0 1.4e-20 73.8 0.0 1.5 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_2 PF02230.11 gi|284166945|ref|YP_003405224.1| - 5.4e-06 26.0 0.0 0.0077 15.6 0.0 2.9 2 1 0 3 3 3 2 Phospholipase/Carboxylesterase Abhydrolase_4 PF08386.5 gi|284166945|ref|YP_003405224.1| - 8e-05 22.4 0.0 0.00014 21.6 0.0 1.3 1 0 0 1 1 1 1 TAP-like protein Esterase PF00756.15 gi|284166945|ref|YP_003405224.1| - 0.0015 17.9 0.1 0.0028 17.1 0.0 1.4 1 1 0 1 1 1 1 Putative esterase Peptidase_S9 PF00326.16 gi|284166945|ref|YP_003405224.1| - 0.0026 17.0 0.0 0.045 12.9 0.0 2.3 3 0 0 3 3 3 1 Prolyl oligopeptidase family Hydrolase_4 PF12146.3 gi|284166945|ref|YP_003405224.1| - 0.0052 16.5 0.1 0.01 15.6 0.0 1.5 1 0 0 1 1 1 1 Putative lysophospholipase Ndr PF03096.9 gi|284166945|ref|YP_003405224.1| - 0.031 12.7 0.0 0.099 11.1 0.0 1.6 1 1 0 1 1 1 0 Ndr family FSH1 PF03959.8 gi|284166945|ref|YP_003405224.1| - 0.048 13.0 0.0 0.076 12.4 0.0 1.2 1 0 0 1 1 1 0 Serine hydrolase (FSH1) DLH PF01738.13 gi|284166945|ref|YP_003405224.1| - 0.13 11.5 0.0 9.7 5.4 0.0 2.2 2 0 0 2 2 2 0 Dienelactone hydrolase family PolC_DP2 PF03833.8 gi|284166946|ref|YP_003405225.1| - 0 1287.2 9.1 8.1e-243 808.0 1.0 2.5 3 0 0 3 3 3 2 DNA polymerase II large subunit DP2 zinc-ribbons_6 PF07191.7 gi|284166946|ref|YP_003405225.1| - 0.67 9.7 15.5 2 8.2 7.4 2.7 2 1 0 2 2 2 0 zinc-ribbons DZR PF12773.2 gi|284166946|ref|YP_003405225.1| - 2.5 8.0 20.3 20 5.0 0.4 3.1 2 1 0 2 2 2 0 Double zinc ribbon HypA PF01155.14 gi|284166946|ref|YP_003405225.1| - 4.7 6.9 19.3 1.8 8.2 2.4 3.4 2 1 1 3 3 3 0 Hydrogenase expression/synthesis hypA family DUF296 PF03479.10 gi|284166947|ref|YP_003405226.1| - 1.7e-24 85.7 0.0 2.1e-24 85.4 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF296) SBP_bac_5 PF00496.17 gi|284166948|ref|YP_003405227.1| - 1.1e-66 225.2 0.6 1.3e-66 224.9 0.4 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|284166948|ref|YP_003405227.1| - 0.23 11.5 1.2 0.47 10.5 0.9 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.17 gi|284166949|ref|YP_003405228.1| - 2.2e-41 141.3 10.0 3.3e-41 140.8 5.4 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component HTH_23 PF13384.1 gi|284166949|ref|YP_003405228.1| - 0.15 11.7 0.3 0.64 9.7 0.1 2.1 2 0 0 2 2 2 0 Homeodomain-like domain YGGT PF02325.12 gi|284166949|ref|YP_003405228.1| - 0.2 11.6 3.2 11 6.0 0.7 2.7 2 0 0 2 2 2 0 YGGT family BPD_transp_1 PF00528.17 gi|284166950|ref|YP_003405229.1| - 6.1e-31 107.3 9.2 6.1e-31 107.3 6.4 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|284166951|ref|YP_003405230.1| - 1e-26 93.8 0.0 1.7e-26 93.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|284166951|ref|YP_003405230.1| - 9.9e-20 70.6 0.3 1.9e-19 69.7 0.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|284166951|ref|YP_003405230.1| - 8.2e-07 29.2 0.0 4.3e-06 26.8 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|284166951|ref|YP_003405230.1| - 0.033 13.8 0.0 0.056 13.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) DUF258 PF03193.11 gi|284166951|ref|YP_003405230.1| - 0.066 12.4 0.0 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|284166951|ref|YP_003405230.1| - 0.12 11.9 0.0 0.22 11.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|284166951|ref|YP_003405230.1| - 0.13 12.2 0.1 0.25 11.3 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_10 PF12846.2 gi|284166951|ref|YP_003405230.1| - 0.15 11.4 0.3 0.93 8.8 0.2 2.0 1 1 1 2 2 2 0 AAA-like domain ABC_tran PF00005.22 gi|284166952|ref|YP_003405231.1| - 3.5e-32 111.5 0.0 5.1e-32 111.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|284166952|ref|YP_003405231.1| - 2.4e-18 66.2 0.2 5.6e-18 65.0 0.2 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|284166952|ref|YP_003405231.1| - 9.3e-06 25.8 0.0 0.06 13.3 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|284166952|ref|YP_003405231.1| - 0.00044 19.5 0.0 0.00062 19.0 0.0 1.1 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|284166952|ref|YP_003405231.1| - 0.0033 16.9 0.0 0.0061 16.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|284166952|ref|YP_003405231.1| - 0.0059 16.6 0.0 0.011 15.7 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|284166952|ref|YP_003405231.1| - 0.023 13.8 0.0 0.036 13.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA PF00004.24 gi|284166952|ref|YP_003405231.1| - 0.049 13.8 0.0 0.16 12.1 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|284166952|ref|YP_003405231.1| - 0.061 13.4 0.2 0.17 12.0 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|284166952|ref|YP_003405231.1| - 0.063 13.0 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.17 gi|284166952|ref|YP_003405231.1| - 0.19 11.9 0.0 0.35 11.0 0.0 1.4 1 0 0 1 1 1 0 RNA helicase Acetyltransf_10 PF13673.1 gi|284166954|ref|YP_003405233.1| - 3.3e-16 59.4 0.1 4e-16 59.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|284166954|ref|YP_003405233.1| - 1e-15 57.4 0.1 1.4e-15 57.0 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|284166954|ref|YP_003405233.1| - 1.7e-11 44.0 0.0 2.3e-11 43.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|284166954|ref|YP_003405233.1| - 2.8e-07 30.6 0.0 3.8e-07 30.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|284166954|ref|YP_003405233.1| - 1e-06 28.9 0.0 1.2e-06 28.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|284166954|ref|YP_003405233.1| - 1.6e-05 24.7 0.2 0.00018 21.3 0.1 2.2 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|284166954|ref|YP_003405233.1| - 2.6e-05 23.8 0.0 4.1e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_6 PF13480.1 gi|284166954|ref|YP_003405233.1| - 0.0003 20.7 0.1 0.00041 20.3 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|284166954|ref|YP_003405233.1| - 0.001 18.9 0.0 0.0067 16.3 0.0 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|284166954|ref|YP_003405233.1| - 0.029 14.2 0.0 0.07 13.0 0.0 1.7 1 1 0 1 1 1 0 GCN5-related N-acetyl-transferase GNAT_acetyltr_2 PF13718.1 gi|284166954|ref|YP_003405233.1| - 0.041 13.1 0.0 0.053 12.8 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase 2 DUF2899 PF11449.3 gi|284166955|ref|YP_003405234.1| - 5.4e-73 245.7 11.7 9.6e-72 241.6 5.6 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF2899) PQQ_3 PF13570.1 gi|284166956|ref|YP_003405235.1| - 2.1e-14 53.2 9.8 1.1e-08 35.1 0.5 2.8 3 0 0 3 3 3 2 PQQ-like domain PQQ_2 PF13360.1 gi|284166956|ref|YP_003405235.1| - 7.5e-12 45.2 1.3 1.1e-11 44.6 0.8 1.3 1 1 0 1 1 1 1 PQQ-like domain PQQ PF01011.16 gi|284166956|ref|YP_003405235.1| - 2.4e-06 26.8 0.3 0.00015 21.0 0.1 3.0 2 0 0 2 2 2 1 PQQ enzyme repeat FAM176 PF14851.1 gi|284166956|ref|YP_003405235.1| - 0.28 10.8 1.0 0.39 10.3 0.7 1.2 1 0 0 1 1 1 0 FAM176 family DUF2457 PF10446.4 gi|284166956|ref|YP_003405235.1| - 5.3 5.6 12.5 6.2 5.4 8.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) UvrB PF12344.3 gi|284166957|ref|YP_003405236.1| - 1.4e-18 66.0 0.2 3.1e-18 65.0 0.2 1.6 1 0 0 1 1 1 1 Ultra-violet resistance protein B Helicase_C PF00271.26 gi|284166957|ref|YP_003405236.1| - 2.1e-15 56.3 0.0 1.1e-14 53.9 0.0 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|284166957|ref|YP_003405236.1| - 1.1e-10 41.6 0.0 7.7e-10 38.8 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit UVR PF02151.14 gi|284166957|ref|YP_003405236.1| - 6.6e-10 38.1 7.7 4e-09 35.6 5.3 2.5 1 0 0 1 1 1 1 UvrB/uvrC motif DEAD PF00270.24 gi|284166957|ref|YP_003405236.1| - 1.2e-05 24.8 0.0 0.00075 19.0 0.0 3.3 3 0 0 3 3 3 1 DEAD/DEAH box helicase DUF87 PF01935.12 gi|284166957|ref|YP_003405236.1| - 0.00089 19.1 3.1 0.0019 18.0 0.1 2.8 3 1 0 3 3 3 1 Domain of unknown function DUF87 ABC_tran PF00005.22 gi|284166957|ref|YP_003405236.1| - 0.013 15.7 0.1 9 6.6 0.1 2.9 3 0 0 3 3 3 0 ABC transporter UB2H PF14814.1 gi|284166957|ref|YP_003405236.1| - 0.026 14.2 0.0 0.067 12.9 0.0 1.7 1 0 0 1 1 1 0 Bifunctional transglycosylase second domain ALIX_LYPXL_bnd PF13949.1 gi|284166958|ref|YP_003405237.1| - 0.0028 16.6 1.8 0.0031 16.5 1.3 1.1 1 0 0 1 1 1 1 ALIX V-shaped domain binding to HIV Cytochrom_B562 PF07361.6 gi|284166958|ref|YP_003405237.1| - 0.0045 17.3 2.2 0.89 9.9 0.1 2.0 1 1 1 2 2 2 2 Cytochrome b562 DUF883 PF05957.8 gi|284166958|ref|YP_003405237.1| - 0.015 15.7 5.9 0.32 11.4 0.2 2.1 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) Halo_GVPC PF05465.8 gi|284166958|ref|YP_003405237.1| - 0.038 13.9 1.9 0.038 13.9 1.3 2.2 2 0 0 2 2 2 0 Halobacterial gas vesicle protein C (GVPC) repeat Hemerythrin PF01814.18 gi|284166958|ref|YP_003405237.1| - 0.05 13.7 4.1 1.4 9.1 2.8 2.0 1 1 0 1 1 1 0 Hemerythrin HHE cation binding domain YtxH PF12732.2 gi|284166958|ref|YP_003405237.1| - 0.059 13.7 4.3 0.23 11.8 3.0 1.9 1 1 0 1 1 1 0 YtxH-like protein Barstar PF01337.13 gi|284166958|ref|YP_003405237.1| - 0.15 11.8 0.7 0.3 10.9 0.1 1.6 1 1 1 2 2 2 0 Barstar (barnase inhibitor) Apolipoprotein PF01442.13 gi|284166958|ref|YP_003405237.1| - 0.18 11.3 3.8 0.22 10.9 2.6 1.2 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain Spc7 PF08317.6 gi|284166958|ref|YP_003405237.1| - 0.19 10.3 1.3 0.33 9.5 0.9 1.4 1 1 0 1 1 1 0 Spc7 kinetochore protein GTPase_Cys_C PF12631.2 gi|284166958|ref|YP_003405237.1| - 0.21 12.0 1.4 1.4 9.3 0.2 2.2 1 1 0 2 2 2 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE V-ATPase_G PF03179.10 gi|284166958|ref|YP_003405237.1| - 0.24 11.6 4.3 0.76 10.1 1.0 2.1 2 0 0 2 2 2 0 Vacuolar (H+)-ATPase G subunit ApoC-I PF04691.7 gi|284166958|ref|YP_003405237.1| - 0.3 10.7 1.4 1.6 8.4 0.1 2.2 2 1 0 2 2 2 0 Apolipoprotein C-I (ApoC-1) BAR PF03114.13 gi|284166958|ref|YP_003405237.1| - 0.56 9.6 4.2 1.1 8.6 2.9 1.5 1 1 0 1 1 1 0 BAR domain Latarcin PF10279.4 gi|284166958|ref|YP_003405237.1| - 0.76 10.0 6.0 5.6 7.2 0.1 2.1 1 1 0 2 2 2 0 Latarcin precursor NIT PF08376.5 gi|284166958|ref|YP_003405237.1| - 0.77 9.2 4.9 4.6 6.7 3.4 2.0 1 1 0 1 1 1 0 Nitrate and nitrite sensing Phasin PF05597.6 gi|284166958|ref|YP_003405237.1| - 0.93 9.2 4.7 7 6.4 0.2 2.1 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) DUF2267 PF10025.4 gi|284166959|ref|YP_003405238.1| - 6.9e-23 81.0 7.7 7.6e-23 80.9 5.3 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2267) NPFF PF15085.1 gi|284166959|ref|YP_003405238.1| - 0.027 14.7 1.0 0.067 13.4 0.1 1.8 1 1 1 2 2 2 0 Neuropeptide FF FliG_N PF14842.1 gi|284166959|ref|YP_003405238.1| - 0.23 11.5 2.6 10 6.2 0.2 2.4 2 1 0 2 2 2 0 FliG N-terminal domain FUSC PF04632.7 gi|284166959|ref|YP_003405238.1| - 0.82 8.0 4.2 0.97 7.7 2.9 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF2267 PF10025.4 gi|284166960|ref|YP_003405239.1| - 8.2e-15 54.9 1.6 9.6e-15 54.7 1.1 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2267) Acetyltransf_6 PF13480.1 gi|284166961|ref|YP_003405240.1| - 0.011 15.7 0.3 11 5.9 0.0 2.9 1 1 2 3 3 3 0 Acetyltransferase (GNAT) domain DoxX PF07681.7 gi|284166963|ref|YP_003405242.1| - 1.2e-14 54.4 16.9 1.2e-13 51.2 9.0 2.1 2 0 0 2 2 2 2 DoxX HR_lesion PF05514.6 gi|284166963|ref|YP_003405242.1| - 2.8e-05 23.9 0.8 8.4e-05 22.4 0.1 1.8 1 1 1 2 2 2 1 HR-like lesion-inducing SURF4 PF02077.10 gi|284166963|ref|YP_003405242.1| - 0.0038 16.6 0.1 0.0051 16.2 0.1 1.1 1 0 0 1 1 1 1 SURF4 family CBS PF00571.23 gi|284166965|ref|YP_003405244.1| - 9.4e-34 114.9 9.6 9.9e-12 44.4 0.1 4.1 4 0 0 4 4 4 4 CBS domain tRNA-synt_2b PF00587.20 gi|284166966|ref|YP_003405245.1| - 1e-52 178.1 0.0 1.7e-52 177.4 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|284166966|ref|YP_003405245.1| - 5.4e-22 77.5 0.2 1.3e-21 76.3 0.1 1.6 1 0 0 1 1 1 1 Anticodon binding domain zf-ribbon_3 PF13248.1 gi|284166966|ref|YP_003405245.1| - 0.0013 17.8 3.7 0.0015 17.6 1.1 2.2 2 1 1 3 3 3 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|284166966|ref|YP_003405245.1| - 0.026 13.9 0.5 8.7 5.9 0.1 2.6 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|284166966|ref|YP_003405245.1| - 0.032 14.1 0.2 4.1 7.4 0.0 2.5 2 0 0 2 2 2 0 Zinc ribbon domain Lar_restr_allev PF14354.1 gi|284166966|ref|YP_003405245.1| - 0.042 14.1 1.2 0.28 11.5 0.9 2.3 1 1 1 2 2 2 0 Restriction alleviation protein Lar Nif11 PF07862.6 gi|284166966|ref|YP_003405245.1| - 0.12 12.3 0.3 0.47 10.4 0.0 2.0 2 0 0 2 2 2 0 Nitrogen fixation protein of unknown function zf-NADH-PPase PF09297.6 gi|284166966|ref|YP_003405245.1| - 0.18 11.3 1.5 1.1 8.7 0.0 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Ribosomal_L32p PF01783.18 gi|284166966|ref|YP_003405245.1| - 0.22 11.6 0.0 1.7 8.8 0.0 2.4 3 0 0 3 3 3 0 Ribosomal L32p protein family zinc_ribbon_4 PF13717.1 gi|284166966|ref|YP_003405245.1| - 0.27 10.9 0.7 3.4 7.4 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|284166966|ref|YP_003405245.1| - 0.31 10.6 0.8 3.8 7.1 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|284166966|ref|YP_003405245.1| - 1.1 8.6 6.6 1.9 7.9 1.6 2.9 2 1 0 2 2 2 0 TFIIB zinc-binding FmdA_AmdA PF03069.10 gi|284166967|ref|YP_003405246.1| - 4e-62 210.0 0.1 1e-30 106.6 0.0 2.4 1 1 1 2 2 2 2 Acetamidase/Formamidase family HTH_10 PF04967.7 gi|284166968|ref|YP_003405247.1| - 2.9e-18 65.1 0.0 5e-18 64.4 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain PAS_4 PF08448.5 gi|284166968|ref|YP_003405247.1| - 1.4e-15 57.3 0.1 3.1e-15 56.1 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|284166968|ref|YP_003405247.1| - 9.1e-15 54.9 0.0 1.8e-14 53.9 0.0 1.5 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|284166968|ref|YP_003405247.1| - 1.5e-11 44.0 0.0 3.9e-11 42.7 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_3 PF08447.6 gi|284166968|ref|YP_003405247.1| - 9.7e-06 25.6 0.0 3.6e-05 23.7 0.0 2.0 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.1 gi|284166968|ref|YP_003405247.1| - 0.0016 18.2 0.0 0.0048 16.7 0.0 1.9 1 0 0 1 1 1 1 PAS domain HTH_11 PF08279.7 gi|284166968|ref|YP_003405247.1| - 0.014 14.9 0.0 0.027 14.1 0.0 1.4 1 0 0 1 1 1 0 HTH domain Sigma70_r4 PF04545.11 gi|284166968|ref|YP_003405247.1| - 0.041 13.1 0.0 0.19 11.0 0.0 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 PAS_10 PF13596.1 gi|284166968|ref|YP_003405247.1| - 0.048 13.9 0.0 0.1 12.8 0.0 1.6 1 0 0 1 1 1 0 PAS domain HTH_20 PF12840.2 gi|284166968|ref|YP_003405247.1| - 0.079 12.7 0.0 0.31 10.8 0.0 2.1 1 1 0 1 1 1 0 Helix-turn-helix domain UPF0122 PF04297.9 gi|284166968|ref|YP_003405247.1| - 0.087 12.8 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like gag-asp_proteas PF13975.1 gi|284166968|ref|YP_003405247.1| - 0.11 12.3 0.0 1.1 9.1 0.0 2.3 2 0 0 2 2 2 0 gag-polyprotein putative aspartyl protease PqiA PF04403.8 gi|284166970|ref|YP_003405249.1| - 0.39 10.2 3.6 0.79 9.2 1.6 1.9 2 0 0 2 2 2 0 Paraquat-inducible protein A YwiC PF14256.1 gi|284166970|ref|YP_003405249.1| - 9.8 6.2 10.7 1.9 8.5 3.4 2.1 2 0 0 2 2 2 0 YwiC-like protein ABC2_membrane_2 PF12679.2 gi|284166971|ref|YP_003405250.1| - 1.3e-27 96.4 15.5 1.7e-27 95.9 10.7 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|284166971|ref|YP_003405250.1| - 8.5e-09 34.9 13.4 1.2e-08 34.4 9.3 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|284166971|ref|YP_003405250.1| - 8.1e-08 31.6 16.6 9.9e-08 31.3 11.5 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|284166971|ref|YP_003405250.1| - 1.5e-05 24.4 2.4 1.5e-05 24.4 1.6 1.6 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|284166971|ref|YP_003405250.1| - 0.0016 17.6 19.9 0.013 14.7 13.8 2.1 1 1 0 1 1 1 1 ABC-2 type transporter ABC_tran PF00005.22 gi|284166972|ref|YP_003405251.1| - 8.8e-26 90.8 0.0 1.4e-25 90.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284166972|ref|YP_003405251.1| - 3.1e-13 50.3 0.0 1.6e-08 34.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|284166972|ref|YP_003405251.1| - 0.0011 18.9 0.0 0.0024 17.8 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|284166972|ref|YP_003405251.1| - 0.0017 17.8 0.1 0.0031 17.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|284166972|ref|YP_003405251.1| - 0.0029 17.9 0.0 0.0044 17.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|284166972|ref|YP_003405251.1| - 0.0039 16.6 0.0 0.23 10.8 0.0 2.2 2 0 0 2 2 2 1 AAA-like domain SMC_N PF02463.14 gi|284166972|ref|YP_003405251.1| - 0.0078 15.4 0.0 3.7 6.7 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain MobB PF03205.9 gi|284166972|ref|YP_003405251.1| - 0.068 12.8 0.1 1.4 8.6 0.0 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|284166972|ref|YP_003405251.1| - 0.08 12.5 0.0 0.79 9.2 0.0 2.2 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|284166972|ref|YP_003405251.1| - 0.11 11.6 0.0 0.17 11.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MFS_1 PF07690.11 gi|284166973|ref|YP_003405252.1| - 7.2e-42 143.3 71.8 7.5e-37 126.8 31.8 1.8 1 1 1 2 2 2 2 Major Facilitator Superfamily LacY_symp PF01306.14 gi|284166973|ref|YP_003405252.1| - 2.4e-05 23.1 10.1 3.6e-05 22.4 3.1 2.4 2 1 0 2 2 2 2 LacY proton/sugar symporter DUF1228 PF06779.9 gi|284166973|ref|YP_003405252.1| - 0.014 15.3 3.0 0.014 15.3 2.1 3.5 4 2 0 4 4 4 0 Protein of unknown function (DUF1228) MFS_1_like PF12832.2 gi|284166973|ref|YP_003405252.1| - 0.032 14.0 10.2 4.1 7.2 0.0 4.4 3 1 1 5 5 5 0 MFS_1 like family PP_kinase_C PF13090.1 gi|284166975|ref|YP_003405254.1| - 3e-153 509.5 0.1 4.2e-153 509.1 0.1 1.2 1 0 0 1 1 1 1 Polyphosphate kinase C-terminal domain PP_kinase PF02503.12 gi|284166975|ref|YP_003405254.1| - 1.1e-63 214.4 3.8 2.1e-63 213.6 2.6 1.5 1 0 0 1 1 1 1 Polyphosphate kinase middle domain PP_kinase_N PF13089.1 gi|284166975|ref|YP_003405254.1| - 6.3e-37 126.0 0.1 1.9e-36 124.4 0.0 1.9 1 0 0 1 1 1 1 Polyphosphate kinase N-terminal domain PLDc_2 PF13091.1 gi|284166975|ref|YP_003405254.1| - 3.8e-13 49.2 0.0 1.7e-06 27.7 0.0 2.4 2 0 0 2 2 2 2 PLD-like domain DUF883 PF05957.8 gi|284166975|ref|YP_003405254.1| - 0.9 9.9 5.4 16 5.9 0.1 3.5 3 0 0 3 3 3 0 Bacterial protein of unknown function (DUF883) Metallophos PF00149.23 gi|284166976|ref|YP_003405255.1| - 1.8e-10 40.5 0.2 6.1e-10 38.8 0.1 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|284166976|ref|YP_003405255.1| - 7.8e-09 35.5 0.0 1.1e-08 35.0 0.0 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain L27 PF02828.11 gi|284166976|ref|YP_003405255.1| - 0.0023 17.5 0.0 0.0094 15.6 0.0 2.0 2 0 0 2 2 2 1 L27 domain Metallophos_3 PF14582.1 gi|284166976|ref|YP_003405255.1| - 0.16 11.1 0.0 0.23 10.5 0.0 1.2 1 0 0 1 1 1 0 Metallophosphoesterase, calcineurin superfamily TspO_MBR PF03073.10 gi|284166978|ref|YP_003405257.1| - 2.1e-46 157.1 18.7 2.4e-46 156.8 12.9 1.0 1 0 0 1 1 1 1 TspO/MBR family DUF3353 PF11833.3 gi|284166978|ref|YP_003405257.1| - 2.1 7.7 6.6 2.2 7.7 3.5 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3353) Tetraspannin PF00335.15 gi|284166978|ref|YP_003405257.1| - 3.8 6.7 6.2 5.9 6.0 4.3 1.2 1 0 0 1 1 1 0 Tetraspanin family ERCC4 PF02732.10 gi|284166979|ref|YP_003405258.1| - 7e-26 90.6 0.0 1.8e-25 89.3 0.0 1.8 1 0 0 1 1 1 1 ERCC4 domain Helicase_C PF00271.26 gi|284166979|ref|YP_003405258.1| - 1.4e-18 66.5 0.0 3.3e-18 65.3 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|284166979|ref|YP_003405258.1| - 3.8e-16 59.0 0.0 1e-15 57.6 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|284166979|ref|YP_003405258.1| - 2e-11 44.0 0.0 8e-11 42.0 0.0 2.0 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit HHH_2 PF12826.2 gi|284166979|ref|YP_003405258.1| - 7.9e-10 38.4 0.3 3.6e-09 36.3 0.2 2.1 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|284166979|ref|YP_003405258.1| - 9.3e-10 38.5 0.6 5.4e-09 36.0 0.1 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.18 gi|284166979|ref|YP_003405258.1| - 1.5e-05 24.4 2.0 0.0009 18.8 0.1 3.2 3 0 0 3 3 3 1 Helix-hairpin-helix motif SNARE PF05739.14 gi|284166979|ref|YP_003405258.1| - 0.0065 16.1 0.8 0.0065 16.1 0.6 2.1 2 0 0 2 2 2 1 SNARE domain 5_3_exonuc PF01367.15 gi|284166979|ref|YP_003405258.1| - 0.0096 16.1 0.0 0.047 13.9 0.0 2.2 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold Helicase_C_2 PF13307.1 gi|284166979|ref|YP_003405258.1| - 0.038 13.9 0.1 0.15 12.0 0.0 2.0 2 0 0 2 2 2 0 Helicase C-terminal domain PAP2 PF01569.16 gi|284166980|ref|YP_003405259.1| - 1.2e-14 54.0 5.7 1.2e-14 54.0 4.0 2.0 2 1 0 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.1 gi|284166980|ref|YP_003405259.1| - 4.7e-12 45.8 10.2 8.2e-12 45.0 7.1 1.3 1 0 0 1 1 1 1 PAP2 superfamily DUF1772 PF08592.6 gi|284166980|ref|YP_003405259.1| - 0.0094 15.6 0.6 0.0094 15.6 0.4 3.1 1 1 1 3 3 3 1 Domain of unknown function (DUF1772) PAP2_C PF14360.1 gi|284166980|ref|YP_003405259.1| - 0.01 16.1 1.1 0.01 16.1 0.7 2.3 2 1 0 2 2 2 0 PAP2 superfamily C-terminal DUF1212 PF06738.7 gi|284166980|ref|YP_003405259.1| - 0.1 12.0 0.3 0.1 12.0 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1212) RseC_MucC PF04246.7 gi|284166980|ref|YP_003405259.1| - 2.7 7.5 7.1 3.7 7.1 0.5 2.6 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC Cu-oxidase_2 PF07731.9 gi|284166981|ref|YP_003405260.1| - 1.1e-29 102.6 17.7 4.8e-18 64.9 2.5 3.8 3 1 0 3 3 3 2 Multicopper oxidase Cu-oxidase_3 PF07732.10 gi|284166981|ref|YP_003405260.1| - 1.5e-21 76.3 10.4 6.6e-19 67.7 1.5 2.7 2 1 0 2 2 2 2 Multicopper oxidase Cu-oxidase PF00394.17 gi|284166981|ref|YP_003405260.1| - 4.4e-12 46.1 0.1 1.2e-11 44.8 0.0 1.6 2 0 0 2 2 2 1 Multicopper oxidase Cupredoxin_1 PF13473.1 gi|284166981|ref|YP_003405260.1| - 0.00093 19.0 0.0 0.31 10.9 0.0 2.7 2 2 0 2 2 2 2 Cupredoxin-like domain Auto_anti-p27 PF06677.7 gi|284166982|ref|YP_003405261.1| - 7.7e-17 60.7 2.0 1.1e-16 60.2 1.4 1.2 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.2 gi|284166982|ref|YP_003405261.1| - 0.0081 15.9 1.0 0.019 14.7 0.7 1.6 1 0 0 1 1 1 1 Double zinc ribbon Prok-RING_1 PF14446.1 gi|284166982|ref|YP_003405261.1| - 0.056 13.1 0.4 0.056 13.1 0.3 1.7 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 GFA PF04828.9 gi|284166982|ref|YP_003405261.1| - 0.21 11.5 1.3 0.66 9.9 0.0 2.1 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme Lysine_decarbox PF03641.9 gi|284166983|ref|YP_003405262.1| - 4e-08 33.1 0.1 7e-08 32.3 0.1 1.4 1 0 0 1 1 1 1 Possible lysine decarboxylase DNA_processg_A PF02481.10 gi|284166983|ref|YP_003405262.1| - 0.003 16.5 5.1 0.0037 16.2 3.0 1.4 2 0 0 2 2 2 1 DNA recombination-mediator protein A AA_kinase PF00696.23 gi|284166983|ref|YP_003405262.1| - 0.047 13.2 0.4 0.069 12.6 0.3 1.2 1 0 0 1 1 1 0 Amino acid kinase family Nuc_deoxyrib_tr PF05014.10 gi|284166983|ref|YP_003405262.1| - 0.097 12.5 0.1 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 Nucleoside 2-deoxyribosyltransferase DAGK_cat PF00781.19 gi|284166983|ref|YP_003405262.1| - 0.33 10.3 5.2 0.49 9.8 0.9 2.2 2 0 0 2 2 2 0 Diacylglycerol kinase catalytic domain Ldh_1_N PF00056.18 gi|284166984|ref|YP_003405263.1| - 1.7e-40 138.0 0.5 2.4e-40 137.6 0.4 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.13 gi|284166984|ref|YP_003405263.1| - 6.6e-33 113.8 0.0 1e-32 113.2 0.0 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain p450 PF00067.17 gi|284166985|ref|YP_003405264.1| - 2.1e-80 270.5 0.0 2.5e-80 270.2 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 HTH_10 PF04967.7 gi|284166986|ref|YP_003405265.1| - 1.5e-14 53.2 0.1 5.7e-14 51.4 0.1 1.9 2 0 0 2 2 2 1 HTH DNA binding domain DUF3055 PF11256.3 gi|284166986|ref|YP_003405265.1| - 0.014 15.5 0.0 0.1 12.7 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3055) Sigma70_r4 PF04545.11 gi|284166986|ref|YP_003405265.1| - 0.032 13.5 0.8 0.14 11.4 0.0 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_1 PF00126.22 gi|284166986|ref|YP_003405265.1| - 0.035 13.8 0.6 0.07 12.8 0.4 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Sigma70_r4_2 PF08281.7 gi|284166986|ref|YP_003405265.1| - 0.16 11.4 1.0 0.97 8.9 0.7 2.1 1 1 0 1 1 1 0 Sigma-70, region 4 Fer4_15 PF13459.1 gi|284166987|ref|YP_003405266.1| - 3.7e-15 56.2 1.4 4.4e-15 56.0 1.0 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|284166987|ref|YP_003405266.1| - 4.3e-05 23.8 0.6 9.4e-05 22.7 0.4 1.5 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_19 PF06902.6 gi|284166987|ref|YP_003405266.1| - 0.0088 15.8 0.3 0.08 12.7 0.2 2.0 1 1 0 1 1 1 1 Divergent 4Fe-4S mono-cluster Fer4 PF00037.22 gi|284166987|ref|YP_003405266.1| - 0.037 13.6 2.1 2.9 7.6 0.1 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_7 PF12838.2 gi|284166987|ref|YP_003405266.1| - 0.046 14.1 0.4 6 7.3 0.1 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|284166987|ref|YP_003405266.1| - 0.12 12.3 1.2 3.5 7.6 0.1 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Methyltransf_11 PF08241.7 gi|284166988|ref|YP_003405267.1| - 1.6e-11 44.4 0.0 4.5e-11 43.0 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|284166988|ref|YP_003405267.1| - 2.8e-10 40.7 0.1 5.5e-10 39.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|284166988|ref|YP_003405267.1| - 1.9e-07 31.3 0.0 3.3e-07 30.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|284166988|ref|YP_003405267.1| - 2.5e-07 30.4 0.0 3.5e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain TPMT PF05724.6 gi|284166988|ref|YP_003405267.1| - 3.5e-06 26.6 0.0 5.2e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_12 PF08242.7 gi|284166988|ref|YP_003405267.1| - 1.9e-05 25.0 0.0 6.6e-05 23.3 0.0 1.9 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|284166988|ref|YP_003405267.1| - 2.2e-05 24.4 0.4 4.9e-05 23.3 0.1 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|284166988|ref|YP_003405267.1| - 7.7e-05 22.4 0.0 0.00013 21.6 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|284166988|ref|YP_003405267.1| - 0.00024 20.2 0.0 0.00035 19.7 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MetW PF07021.7 gi|284166988|ref|YP_003405267.1| - 0.0013 18.1 0.0 0.0017 17.7 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW MTS PF05175.9 gi|284166988|ref|YP_003405267.1| - 0.0087 15.4 0.0 0.013 14.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_9 PF08003.6 gi|284166988|ref|YP_003405267.1| - 0.079 11.6 0.0 0.11 11.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) TehB PF03848.9 gi|284166988|ref|YP_003405267.1| - 0.093 11.8 0.0 0.14 11.3 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB Pox_MCEL PF03291.11 gi|284166988|ref|YP_003405267.1| - 0.16 10.8 0.0 0.21 10.4 0.0 1.1 1 0 0 1 1 1 0 mRNA capping enzyme PHO4 PF01384.15 gi|284166989|ref|YP_003405268.1| - 1.6e-35 122.2 26.4 3.1e-35 121.3 18.3 1.5 1 1 0 1 1 1 1 Phosphate transporter family Usp PF00582.21 gi|284166990|ref|YP_003405269.1| - 9.3e-14 51.8 0.8 1.1e-13 51.5 0.6 1.0 1 0 0 1 1 1 1 Universal stress protein family PAD_porph PF04371.10 gi|284166990|ref|YP_003405269.1| - 0.15 11.0 0.0 0.24 10.4 0.0 1.3 1 0 0 1 1 1 0 Porphyromonas-type peptidyl-arginine deiminase MgtE PF01769.11 gi|284166991|ref|YP_003405270.1| - 1e-18 67.8 11.1 1.7e-18 67.1 7.7 1.3 1 0 0 1 1 1 1 Divalent cation transporter MgtE_N PF03448.12 gi|284166991|ref|YP_003405270.1| - 4.4e-15 55.8 1.3 4.4e-15 55.8 0.9 1.9 3 0 0 3 3 3 1 MgtE intracellular N domain CBS PF00571.23 gi|284166991|ref|YP_003405270.1| - 6.5e-09 35.4 4.0 1.4e-05 24.7 0.2 3.0 3 0 0 3 3 3 2 CBS domain DEAD_assoc PF08494.6 gi|284166991|ref|YP_003405270.1| - 0.031 14.0 0.2 0.064 12.9 0.1 1.5 1 0 0 1 1 1 0 DEAD/H associated DEAD PF00270.24 gi|284166992|ref|YP_003405271.1| - 9.1e-26 90.3 0.0 1.8e-25 89.3 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|284166992|ref|YP_003405271.1| - 7.7e-07 28.8 0.0 1.7e-06 27.7 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|284166992|ref|YP_003405271.1| - 1.5e-06 28.1 0.0 3.5e-06 26.9 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_5 PF14520.1 gi|284166992|ref|YP_003405271.1| - 6.3e-06 26.2 0.7 6.3e-06 26.2 0.5 3.0 3 0 0 3 3 3 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.4 gi|284166992|ref|YP_003405271.1| - 0.00017 21.0 0.0 0.00037 19.9 0.0 1.6 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda HHH PF00633.18 gi|284166992|ref|YP_003405271.1| - 0.029 14.0 0.1 2.1 8.2 0.0 3.1 3 0 0 3 3 3 0 Helix-hairpin-helix motif MarR PF01047.17 gi|284166992|ref|YP_003405271.1| - 0.061 13.0 0.1 2.9 7.6 0.0 2.5 2 0 0 2 2 2 0 MarR family adh_short PF00106.20 gi|284166992|ref|YP_003405271.1| - 0.92 9.4 6.9 0.22 11.3 0.7 2.9 3 1 1 4 4 4 0 short chain dehydrogenase CGI-121 PF08617.5 gi|284166993|ref|YP_003405272.1| - 1.7e-17 63.5 0.0 2e-17 63.3 0.0 1.0 1 0 0 1 1 1 1 Kinase binding protein CGI-121 MDMPI_C PF07398.6 gi|284166993|ref|YP_003405272.1| - 0.99 10.0 13.2 0.04 14.4 1.7 2.3 2 0 0 2 2 2 0 MDMPI C-terminal domain DUF59 PF01883.14 gi|284166994|ref|YP_003405273.1| - 8.6e-14 51.2 0.1 2e-13 50.1 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function DUF59 Amidohydro_2 PF04909.9 gi|284166995|ref|YP_003405274.1| - 2.4e-36 125.7 2.8 2.8e-36 125.4 1.9 1.1 1 0 0 1 1 1 1 Amidohydrolase ADH_N PF08240.7 gi|284166996|ref|YP_003405275.1| - 1.6e-28 98.5 1.8 2.9e-28 97.7 0.2 2.0 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|284166996|ref|YP_003405275.1| - 6.6e-23 80.6 1.9 7.2e-23 80.5 0.4 1.7 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|284166996|ref|YP_003405275.1| - 3.7e-07 31.0 1.9 6.7e-07 30.2 1.3 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase TP_methylase PF00590.15 gi|284166996|ref|YP_003405275.1| - 0.0051 16.5 0.3 0.016 14.9 0.1 1.9 2 0 0 2 2 2 1 Tetrapyrrole (Corrin/Porphyrin) Methylases MTS PF05175.9 gi|284166996|ref|YP_003405275.1| - 0.032 13.6 0.3 0.05 12.9 0.2 1.3 1 0 0 1 1 1 0 Methyltransferase small domain NADH_4Fe-4S PF10589.4 gi|284166996|ref|YP_003405275.1| - 0.35 10.0 3.1 0.97 8.6 2.2 1.7 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region A2L_zn_ribbon PF08792.5 gi|284166997|ref|YP_003405276.1| - 0.043 13.2 0.6 5 6.7 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain CAF1-p150_N PF15557.1 gi|284166997|ref|YP_003405276.1| - 0.1 11.8 0.4 0.12 11.7 0.3 1.0 1 0 0 1 1 1 0 CAF1 complex subunit p150, region binding to PCNA zf-HIT PF04438.11 gi|284166997|ref|YP_003405276.1| - 0.12 12.0 1.0 1.4 8.6 0.1 2.1 2 0 0 2 2 2 0 HIT zinc finger TF_Zn_Ribbon PF08271.7 gi|284166997|ref|YP_003405276.1| - 0.16 11.3 1.2 1.3 8.3 0.1 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding DUF164 PF02591.10 gi|284166997|ref|YP_003405276.1| - 0.23 11.3 3.4 2.1 8.2 2.3 2.1 1 1 0 1 1 1 0 Putative zinc ribbon domain zf-ISL3 PF14690.1 gi|284166997|ref|YP_003405276.1| - 1 9.4 3.6 9.8 6.2 0.7 2.1 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Oxidored_FMN PF00724.15 gi|284166998|ref|YP_003405277.1| - 1.6e-40 139.1 0.0 2.9e-35 121.8 0.0 2.2 2 0 0 2 2 2 2 NADH:flavin oxidoreductase / NADH oxidase family Dus PF01207.12 gi|284166998|ref|YP_003405277.1| - 0.045 12.5 0.0 0.11 11.3 0.0 1.6 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) His_biosynth PF00977.16 gi|284166998|ref|YP_003405277.1| - 0.067 12.4 0.0 0.13 11.4 0.0 1.5 1 0 0 1 1 1 0 Histidine biosynthesis protein Rhodanese PF00581.15 gi|284166999|ref|YP_003405278.1| - 4.1e-09 36.7 0.1 8.1e-09 35.8 0.1 1.4 1 0 0 1 1 1 1 Rhodanese-like domain TAT_signal PF10518.4 gi|284166999|ref|YP_003405278.1| - 0.049 13.6 0.9 0.082 12.9 0.6 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Pex24p PF06398.6 gi|284167000|ref|YP_003405279.1| - 0.074 11.8 1.9 0.086 11.6 1.3 1.1 1 0 0 1 1 1 0 Integral peroxisomal membrane peroxin HNH PF01844.18 gi|284167000|ref|YP_003405279.1| - 0.1 12.4 9.3 0.86 9.5 6.4 2.2 1 1 0 1 1 1 0 HNH endonuclease IMP_cyclohyd PF07826.6 gi|284167001|ref|YP_003405280.1| - 2.5e-61 206.5 0.1 2.8e-61 206.3 0.0 1.0 1 0 0 1 1 1 1 IMP cyclohydrolase-like protein Metallophos_2 PF12850.2 gi|284167002|ref|YP_003405281.1| - 5e-33 114.1 0.0 6.1e-33 113.8 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|284167002|ref|YP_003405281.1| - 2.7e-11 43.2 0.1 3.5e-11 42.8 0.1 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Hexapep PF00132.19 gi|284167003|ref|YP_003405282.1| - 1.9e-15 55.5 8.3 2.9e-08 32.8 0.2 3.5 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|284167003|ref|YP_003405282.1| - 3e-08 33.0 7.4 1.2e-05 24.7 0.6 3.1 2 1 1 3 3 3 2 Hexapeptide repeat of succinyl-transferase SATase_N PF06426.9 gi|284167003|ref|YP_003405282.1| - 0.00021 21.4 0.0 0.00032 20.9 0.0 1.3 1 0 0 1 1 1 1 Serine acetyltransferase, N-terminal PAP2_3 PF14378.1 gi|284167003|ref|YP_003405282.1| - 0.022 14.2 0.3 0.028 13.9 0.2 1.1 1 0 0 1 1 1 0 PAP2 superfamily Terminase_GpA PF05876.7 gi|284167004|ref|YP_003405283.1| - 0.0092 14.3 0.6 0.012 14.0 0.4 1.1 1 0 0 1 1 1 1 Phage terminase large subunit (GpA) Zn_Tnp_IS1 PF03811.8 gi|284167004|ref|YP_003405283.1| - 0.046 13.2 0.2 0.088 12.3 0.1 1.5 1 0 0 1 1 1 0 InsA N-terminal domain Lar_restr_allev PF14354.1 gi|284167004|ref|YP_003405283.1| - 0.049 13.9 1.3 0.12 12.7 0.9 1.7 1 1 0 1 1 1 0 Restriction alleviation protein Lar DNA_ligase_ZBD PF03119.11 gi|284167004|ref|YP_003405283.1| - 0.1 12.2 0.2 0.34 10.6 0.1 1.9 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain PGM_PMM_I PF02878.11 gi|284167005|ref|YP_003405284.1| - 1.5e-36 124.8 0.0 2.7e-36 124.0 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.11 gi|284167005|ref|YP_003405284.1| - 1.4e-24 86.3 0.1 2.5e-24 85.4 0.1 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.11 gi|284167005|ref|YP_003405284.1| - 6.7e-23 81.0 0.1 1.8e-22 79.6 0.1 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|284167005|ref|YP_003405284.1| - 4.6e-14 52.1 0.6 1.1e-13 50.9 0.1 1.9 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain FMN_red PF03358.10 gi|284167006|ref|YP_003405285.1| - 3.8e-31 107.6 0.0 4.6e-31 107.3 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|284167006|ref|YP_003405285.1| - 3.1e-10 39.9 0.0 4.7e-10 39.3 0.0 1.3 1 1 0 1 1 1 1 Flavodoxin-like fold GIY-YIG PF01541.19 gi|284167008|ref|YP_003405287.1| - 1.7e-13 50.7 0.1 1.9e-13 50.5 0.1 1.0 1 0 0 1 1 1 1 GIY-YIG catalytic domain T5orf172 PF10544.4 gi|284167008|ref|YP_003405287.1| - 0.087 13.2 0.2 0.11 12.8 0.2 1.3 1 1 0 1 1 1 0 T5orf172 domain DZR PF12773.2 gi|284167009|ref|YP_003405288.1| - 0.0035 17.1 0.6 0.0042 16.8 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon DUF2387 PF09526.5 gi|284167009|ref|YP_003405288.1| - 0.037 13.9 0.6 0.053 13.4 0.4 1.4 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) zf-ribbon_3 PF13248.1 gi|284167009|ref|YP_003405288.1| - 0.1 11.8 0.8 1.9 7.8 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain SerH PF06873.6 gi|284167009|ref|YP_003405288.1| - 0.12 10.9 1.0 0.14 10.7 0.7 1.0 1 0 0 1 1 1 0 Cell surface immobilisation antigen SerH zinc_ribbon_2 PF13240.1 gi|284167009|ref|YP_003405288.1| - 0.22 11.0 1.2 0.34 10.4 0.9 1.5 1 1 0 1 1 1 0 zinc-ribbon domain FYVE PF01363.16 gi|284167009|ref|YP_003405288.1| - 0.25 11.2 1.4 0.41 10.5 1.0 1.4 1 1 0 1 1 1 0 FYVE zinc finger AIRC PF00731.15 gi|284167010|ref|YP_003405289.1| - 8.2e-15 54.3 2.5 8.2e-15 54.3 1.8 1.6 2 0 0 2 2 2 1 AIR carboxylase DUF1931 PF09123.6 gi|284167011|ref|YP_003405290.1| - 8.9e-05 22.4 1.1 9.9e-05 22.3 0.8 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) CBFD_NFYB_HMF PF00808.18 gi|284167011|ref|YP_003405290.1| - 0.00056 19.9 0.1 0.00087 19.3 0.1 1.4 1 1 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|284167011|ref|YP_003405290.1| - 0.00066 19.7 0.1 0.00075 19.5 0.0 1.3 1 1 0 1 1 1 1 Core histone H2A/H2B/H3/H4 OmdA PF13376.1 gi|284167011|ref|YP_003405290.1| - 0.086 12.5 0.4 0.13 11.9 0.1 1.4 1 1 0 1 1 1 0 Bacteriocin-protection, YdeI or OmpD-Associated DUF2191 PF09957.4 gi|284167011|ref|YP_003405290.1| - 0.18 11.6 3.4 0.7 9.7 0.6 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2191) Rib_5-P_isom_A PF06026.9 gi|284167014|ref|YP_003405293.1| - 3.3e-57 192.5 0.0 4.1e-57 192.2 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.17 gi|284167014|ref|YP_003405293.1| - 7e-05 22.5 0.1 0.0056 16.3 0.0 2.2 2 0 0 2 2 2 2 DeoR C terminal sensor domain ABC2_membrane_2 PF12679.2 gi|284167015|ref|YP_003405294.1| - 6.5e-40 136.7 13.3 7.5e-40 136.5 9.2 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|284167015|ref|YP_003405294.1| - 1e-15 57.5 13.2 1.4e-15 57.1 9.2 1.2 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|284167015|ref|YP_003405294.1| - 2.6e-10 39.8 16.4 3.6e-10 39.3 11.4 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|284167015|ref|YP_003405294.1| - 0.00024 20.3 14.3 0.00024 20.3 9.9 1.7 2 1 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_5 PF13346.1 gi|284167015|ref|YP_003405294.1| - 0.00094 18.5 9.1 0.0018 17.5 6.3 1.5 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|284167016|ref|YP_003405295.1| - 1e-27 97.1 0.0 1.6e-27 96.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284167016|ref|YP_003405295.1| - 3.6e-14 53.4 0.0 1.7e-09 38.0 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|284167016|ref|YP_003405295.1| - 0.00023 20.4 0.0 0.053 12.7 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_30 PF13604.1 gi|284167016|ref|YP_003405295.1| - 0.0014 18.2 0.0 0.0034 16.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain DUF4162 PF13732.1 gi|284167016|ref|YP_003405295.1| - 0.0039 17.6 0.0 0.016 15.7 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_10 PF12846.2 gi|284167016|ref|YP_003405295.1| - 0.0062 16.0 0.0 0.065 12.6 0.0 2.0 2 0 0 2 2 2 1 AAA-like domain AAA_16 PF13191.1 gi|284167016|ref|YP_003405295.1| - 0.012 15.6 0.1 0.031 14.2 0.1 1.9 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.1 gi|284167016|ref|YP_003405295.1| - 0.013 15.0 0.0 0.026 14.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|284167016|ref|YP_003405295.1| - 0.018 14.9 0.1 0.071 13.0 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF258 PF03193.11 gi|284167016|ref|YP_003405295.1| - 0.02 14.0 0.0 0.033 13.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|284167016|ref|YP_003405295.1| - 0.023 14.9 0.0 0.033 14.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|284167016|ref|YP_003405295.1| - 0.067 12.9 0.4 1.3 8.8 0.0 2.9 3 0 0 3 3 3 0 Part of AAA domain ABC_tran PF00005.22 gi|284167017|ref|YP_003405296.1| - 6.6e-33 113.9 0.0 9.7e-33 113.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284167017|ref|YP_003405296.1| - 4.1e-09 36.8 0.0 0.00048 20.1 0.0 2.4 3 0 0 3 3 3 2 AAA domain SMC_N PF02463.14 gi|284167017|ref|YP_003405296.1| - 1.3e-06 27.8 0.0 0.0099 15.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|284167017|ref|YP_003405296.1| - 1.4e-05 24.5 0.0 2.8e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|284167017|ref|YP_003405296.1| - 0.00047 19.6 0.4 0.00067 19.1 0.3 1.4 1 1 0 1 1 1 1 AAA-like domain AAA_25 PF13481.1 gi|284167017|ref|YP_003405296.1| - 0.00049 19.5 0.4 0.0011 18.4 0.3 1.9 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|284167017|ref|YP_003405296.1| - 0.0012 18.7 0.9 0.013 15.4 0.6 2.2 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|284167017|ref|YP_003405296.1| - 0.0017 17.5 0.0 0.0027 16.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 MMR_HSR1 PF01926.18 gi|284167017|ref|YP_003405296.1| - 0.0027 17.6 0.2 0.024 14.5 0.1 2.1 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_22 PF13401.1 gi|284167017|ref|YP_003405296.1| - 0.0037 17.3 0.6 0.022 14.9 0.1 2.2 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|284167017|ref|YP_003405296.1| - 0.011 15.6 1.9 0.029 14.3 1.1 2.0 1 1 0 1 1 1 0 AAA ATPase domain AAA_17 PF13207.1 gi|284167017|ref|YP_003405296.1| - 0.012 16.4 1.4 0.038 14.8 1.0 2.2 1 1 0 1 1 1 0 AAA domain PrpR_N PF06506.6 gi|284167017|ref|YP_003405296.1| - 0.028 13.8 0.1 0.048 13.0 0.1 1.3 1 0 0 1 1 1 0 Propionate catabolism activator AAA_23 PF13476.1 gi|284167017|ref|YP_003405296.1| - 0.033 14.5 0.0 0.064 13.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|284167017|ref|YP_003405296.1| - 0.069 13.4 0.9 0.84 9.9 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|284167017|ref|YP_003405296.1| - 0.57 9.9 4.2 0.55 10.0 0.1 2.8 3 0 0 3 3 3 0 Part of AAA domain AAA_28 PF13521.1 gi|284167017|ref|YP_003405296.1| - 1.6 8.6 4.1 0.84 9.5 0.2 2.2 2 1 0 2 2 2 0 AAA domain MacB_PCD PF12704.2 gi|284167018|ref|YP_003405297.1| - 1.1e-35 123.3 0.1 1.1e-35 123.3 0.1 2.0 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|284167018|ref|YP_003405297.1| - 9.9e-26 89.8 9.5 9.9e-26 89.8 6.6 2.1 2 0 0 2 2 2 1 FtsX-like permease family ATPase_gene1 PF09527.5 gi|284167018|ref|YP_003405297.1| - 0.12 12.2 17.6 0.54 10.1 1.0 3.5 3 0 0 3 3 3 0 Putative F0F1-ATPase subunit (ATPase_gene1) Rick_17kDa_Anti PF05433.10 gi|284167019|ref|YP_003405298.1| - 0.00017 21.2 10.7 0.08 12.6 4.2 3.4 3 0 0 3 3 3 2 Glycine zipper 2TM domain Gly-zipper_YMGG PF13441.1 gi|284167019|ref|YP_003405298.1| - 3.7 7.1 21.0 0.86 9.1 10.4 2.8 2 1 0 2 2 2 0 YMGG-like Gly-zipper UPF0118 PF01594.11 gi|284167020|ref|YP_003405299.1| - 5.1e-33 114.4 36.1 2.7e-32 112.0 25.0 1.8 1 1 0 1 1 1 1 Domain of unknown function DUF20 DUF456 PF04306.8 gi|284167020|ref|YP_003405299.1| - 2.5 8.1 38.2 0.13 12.2 3.5 3.3 3 1 1 4 4 4 0 Protein of unknown function (DUF456) DUF3353 PF11833.3 gi|284167021|ref|YP_003405300.1| - 0.0052 16.2 3.5 0.0069 15.8 2.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3353) MARVEL PF01284.18 gi|284167021|ref|YP_003405300.1| - 0.0096 15.7 3.6 0.0096 15.7 2.5 1.6 1 1 1 2 2 2 1 Membrane-associating domain DsbD PF02683.10 gi|284167021|ref|YP_003405300.1| - 1.7 8.1 5.7 1.4 8.4 0.2 2.0 1 1 1 2 2 2 0 Cytochrome C biogenesis protein transmembrane region Helicase_C_2 PF13307.1 gi|284167022|ref|YP_003405301.1| - 1.5e-33 116.0 0.0 3e-33 115.1 0.0 1.4 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|284167022|ref|YP_003405301.1| - 1.4e-07 31.0 0.0 4.8e-07 29.3 0.0 1.9 1 1 0 1 1 1 1 DEAD_2 PhoH PF02562.11 gi|284167022|ref|YP_003405301.1| - 0.0014 17.9 0.0 0.0027 16.9 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein AAA_19 PF13245.1 gi|284167022|ref|YP_003405301.1| - 0.0027 17.4 0.0 0.0083 15.8 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain ResIII PF04851.10 gi|284167022|ref|YP_003405301.1| - 0.0031 17.3 0.0 0.0086 15.9 0.0 1.6 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|284167022|ref|YP_003405301.1| - 0.0051 16.3 0.0 0.74 9.2 0.0 2.4 2 0 0 2 2 2 1 DEAD/DEAH box helicase DUF2075 PF09848.4 gi|284167022|ref|YP_003405301.1| - 0.02 13.8 0.1 0.061 12.2 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.1 gi|284167022|ref|YP_003405301.1| - 0.059 12.9 0.0 0.36 10.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain Uds1 PF15456.1 gi|284167022|ref|YP_003405301.1| - 0.092 12.7 0.2 0.22 11.5 0.1 1.6 1 0 0 1 1 1 0 Up-regulated During Septation UvrD-helicase PF00580.16 gi|284167022|ref|YP_003405301.1| - 0.26 10.5 0.0 0.41 9.9 0.0 1.2 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain Abi PF02517.11 gi|284167023|ref|YP_003405302.1| - 4e-11 42.9 6.4 4e-11 42.9 4.4 2.2 3 1 0 3 3 3 1 CAAX protease self-immunity Ribosomal_L36 PF00444.13 gi|284167024|ref|YP_003405303.1| - 0.16 11.9 0.0 0.23 11.4 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L36 DUF1684 PF07920.6 gi|284167026|ref|YP_003405305.1| - 7e-50 168.5 0.1 1e-49 168.0 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1684) Methyltransf_11 PF08241.7 gi|284167027|ref|YP_003405306.1| - 2.9e-25 88.5 0.0 5.1e-25 87.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|284167027|ref|YP_003405306.1| - 4.4e-18 65.3 0.0 5.6e-18 64.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|284167027|ref|YP_003405306.1| - 1.8e-15 57.1 0.0 3.7e-15 56.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|284167027|ref|YP_003405306.1| - 3.1e-12 47.0 0.1 6.8e-12 45.9 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|284167027|ref|YP_003405306.1| - 6.9e-12 44.9 0.0 1.8e-11 43.6 0.0 1.6 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|284167027|ref|YP_003405306.1| - 1.5e-11 44.3 0.1 2e-11 43.8 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|284167027|ref|YP_003405306.1| - 1.9e-11 44.2 0.0 3.1e-11 43.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|284167027|ref|YP_003405306.1| - 1e-09 38.4 0.5 3.6e-09 36.6 0.1 2.0 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_9 PF08003.6 gi|284167027|ref|YP_003405306.1| - 0.0003 19.6 0.0 0.00045 19.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_8 PF05148.10 gi|284167027|ref|YP_003405306.1| - 0.0004 20.0 0.0 0.0018 17.9 0.0 1.8 1 1 0 1 1 1 1 Hypothetical methyltransferase CMAS PF02353.15 gi|284167027|ref|YP_003405306.1| - 0.0016 17.5 0.0 0.0022 17.1 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.1 gi|284167027|ref|YP_003405306.1| - 0.0017 18.0 0.0 0.0029 17.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|284167027|ref|YP_003405306.1| - 0.0022 17.3 0.0 0.0044 16.4 0.0 1.4 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_24 PF13578.1 gi|284167027|ref|YP_003405306.1| - 0.0027 18.5 0.1 0.0063 17.3 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain MTS PF05175.9 gi|284167027|ref|YP_003405306.1| - 0.0033 16.8 0.0 0.0056 16.0 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.14 gi|284167027|ref|YP_003405306.1| - 0.0067 15.9 0.0 0.01 15.3 0.0 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) N6_N4_Mtase PF01555.13 gi|284167027|ref|YP_003405306.1| - 0.026 14.0 0.0 2.3 7.6 0.0 2.3 2 1 0 2 2 2 0 DNA methylase Fibrillarin PF01269.12 gi|284167027|ref|YP_003405306.1| - 0.06 12.2 0.0 0.1 11.5 0.0 1.3 1 0 0 1 1 1 0 Fibrillarin Exo_endo_phos PF03372.18 gi|284167027|ref|YP_003405306.1| - 0.092 12.6 0.1 0.12 12.3 0.1 1.2 1 0 0 1 1 1 0 Endonuclease/Exonuclease/phosphatase family Methyltransf_4 PF02390.12 gi|284167027|ref|YP_003405306.1| - 0.15 11.0 0.0 7.1 5.6 0.0 2.4 2 1 0 2 2 2 0 Putative methyltransferase KaiC PF06745.8 gi|284167028|ref|YP_003405307.1| - 6.3e-05 22.1 0.1 8.1e-05 21.8 0.0 1.0 1 0 0 1 1 1 1 KaiC SIP PF04954.8 gi|284167028|ref|YP_003405307.1| - 0.051 13.9 0.0 0.095 13.0 0.0 1.4 1 0 0 1 1 1 0 Siderophore-interacting protein Dabb PF07876.7 gi|284167028|ref|YP_003405307.1| - 0.081 13.3 0.3 0.3 11.5 0.0 2.3 1 1 1 2 2 2 0 Stress responsive A/B Barrel Domain CBS PF00571.23 gi|284167029|ref|YP_003405308.1| - 1.6e-23 82.2 5.9 2.3e-11 43.3 0.6 2.1 2 0 0 2 2 2 2 CBS domain MR_MLE PF01188.16 gi|284167030|ref|YP_003405309.1| - 0.074 13.5 1.6 5.8 7.5 0.0 3.2 3 0 0 3 3 3 0 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain DUF2072 PF09845.4 gi|284167032|ref|YP_003405311.1| - 2e-28 98.9 3.4 1.9e-13 50.4 0.5 2.6 2 1 0 2 2 2 2 Zn-ribbon containing protein (DUF2072) zf-C2H2_6 PF13912.1 gi|284167032|ref|YP_003405311.1| - 0.033 14.1 0.1 0.075 12.9 0.1 1.6 1 0 0 1 1 1 0 C2H2-type zinc finger DUF1451 PF07295.6 gi|284167032|ref|YP_003405311.1| - 0.076 12.7 0.7 0.18 11.6 0.4 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1451) zinc_ribbon_2 PF13240.1 gi|284167032|ref|YP_003405311.1| - 0.16 11.5 4.6 0.27 10.7 3.2 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|284167032|ref|YP_003405311.1| - 0.95 9.4 2.9 3.2 7.8 2.0 1.9 1 1 0 1 1 1 0 Zinc ribbon domain zf-C2H2 PF00096.21 gi|284167032|ref|YP_003405311.1| - 5.8 7.4 5.2 2.6 8.5 0.4 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type DUF2073 PF09846.4 gi|284167033|ref|YP_003405312.1| - 6.3e-46 154.3 1.3 7.4e-46 154.0 0.9 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) MMR_HSR1 PF01926.18 gi|284167034|ref|YP_003405313.1| - 3.5e-15 55.9 0.0 5e-15 55.4 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|284167034|ref|YP_003405313.1| - 7.9e-13 48.2 0.3 3.4e-06 26.6 0.0 2.7 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain Arf PF00025.16 gi|284167034|ref|YP_003405313.1| - 4.5e-08 32.5 0.0 5.7e-05 22.4 0.1 2.5 2 1 0 2 2 2 2 ADP-ribosylation factor family AAA_17 PF13207.1 gi|284167034|ref|YP_003405313.1| - 1.6e-05 25.6 0.5 4.2e-05 24.3 0.4 1.9 1 1 0 1 1 1 1 AAA domain FeoB_N PF02421.13 gi|284167034|ref|YP_003405313.1| - 1.7e-05 24.1 0.3 0.00019 20.7 0.2 2.4 1 1 0 1 1 1 1 Ferrous iron transport protein B NB-ARC PF00931.17 gi|284167034|ref|YP_003405313.1| - 8.5e-05 21.5 0.0 0.00026 19.9 0.0 1.7 2 0 0 2 2 2 1 NB-ARC domain SRPRB PF09439.5 gi|284167034|ref|YP_003405313.1| - 0.00022 20.4 0.0 0.063 12.4 0.0 2.2 2 0 0 2 2 2 1 Signal recognition particle receptor beta subunit AAA_18 PF13238.1 gi|284167034|ref|YP_003405313.1| - 0.00047 20.4 0.0 0.0013 19.0 0.0 1.9 1 1 1 2 2 1 1 AAA domain AAA_22 PF13401.1 gi|284167034|ref|YP_003405313.1| - 0.00081 19.5 0.0 0.0015 18.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|284167034|ref|YP_003405313.1| - 0.00098 19.1 0.0 0.0017 18.3 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain Miro PF08477.8 gi|284167034|ref|YP_003405313.1| - 0.0016 18.9 0.0 0.0085 16.5 0.0 2.0 1 1 0 1 1 1 1 Miro-like protein AAA PF00004.24 gi|284167034|ref|YP_003405313.1| - 0.0018 18.4 0.1 0.017 15.2 0.0 2.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Ras PF00071.17 gi|284167034|ref|YP_003405313.1| - 0.0021 17.4 0.0 0.15 11.3 0.0 2.5 2 1 0 2 2 2 1 Ras family Septin PF00735.13 gi|284167034|ref|YP_003405313.1| - 0.0021 17.1 0.0 0.0023 16.9 0.0 1.3 1 0 0 1 1 1 1 Septin Zeta_toxin PF06414.7 gi|284167034|ref|YP_003405313.1| - 0.0022 17.1 0.0 0.012 14.7 0.0 2.0 2 0 0 2 2 2 1 Zeta toxin Arch_ATPase PF01637.13 gi|284167034|ref|YP_003405313.1| - 0.0027 17.4 0.0 0.036 13.7 0.0 2.1 1 1 0 1 1 1 1 Archaeal ATPase Dynamin_N PF00350.18 gi|284167034|ref|YP_003405313.1| - 0.0056 16.5 0.0 0.33 10.7 0.0 2.3 2 0 0 2 2 2 1 Dynamin family AAA_28 PF13521.1 gi|284167034|ref|YP_003405313.1| - 0.0092 15.9 0.1 0.018 15.0 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|284167034|ref|YP_003405313.1| - 0.0098 15.6 0.1 0.029 14.1 0.0 1.8 2 0 0 2 2 1 1 Part of AAA domain NTPase_1 PF03266.10 gi|284167034|ref|YP_003405313.1| - 0.01 15.5 0.0 0.014 15.0 0.0 1.3 1 0 0 1 1 1 0 NTPase RNA_helicase PF00910.17 gi|284167034|ref|YP_003405313.1| - 0.012 15.8 0.0 0.018 15.2 0.0 1.5 1 0 0 1 1 1 0 RNA helicase cobW PF02492.14 gi|284167034|ref|YP_003405313.1| - 0.013 14.9 0.2 0.54 9.6 0.1 2.3 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ABC_tran PF00005.22 gi|284167034|ref|YP_003405313.1| - 0.014 15.6 0.0 0.022 15.0 0.0 1.4 1 0 0 1 1 1 0 ABC transporter MMR_HSR1_C PF08438.5 gi|284167034|ref|YP_003405313.1| - 0.018 15.2 0.1 0.064 13.4 0.0 1.9 2 0 0 2 2 2 0 GTPase of unknown function C-terminal ArgK PF03308.11 gi|284167034|ref|YP_003405313.1| - 0.034 12.9 0.1 0.78 8.4 0.0 2.7 3 1 0 3 3 3 0 ArgK protein AAA_14 PF13173.1 gi|284167034|ref|YP_003405313.1| - 0.039 13.8 0.0 0.062 13.2 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|284167034|ref|YP_003405313.1| - 0.044 13.1 0.1 0.11 11.8 0.1 1.8 1 1 0 1 1 1 0 AAA domain RuvB_N PF05496.7 gi|284167034|ref|YP_003405313.1| - 0.052 12.5 0.0 0.087 11.8 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus ATP_bind_1 PF03029.12 gi|284167034|ref|YP_003405313.1| - 0.061 12.8 0.0 3.7 7.0 0.0 2.9 3 1 0 3 3 3 0 Conserved hypothetical ATP binding protein NACHT PF05729.7 gi|284167034|ref|YP_003405313.1| - 0.07 12.7 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 NACHT domain FMN_bind PF04205.9 gi|284167034|ref|YP_003405313.1| - 0.07 13.2 0.1 0.15 12.2 0.1 1.6 1 0 0 1 1 1 0 FMN-binding domain MobB PF03205.9 gi|284167034|ref|YP_003405313.1| - 0.07 12.8 0.0 0.27 10.9 0.0 1.9 1 1 1 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B DUF258 PF03193.11 gi|284167034|ref|YP_003405313.1| - 0.098 11.8 0.0 0.2 10.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 ATP-synt_ab PF00006.20 gi|284167034|ref|YP_003405313.1| - 0.13 11.7 0.0 0.13 11.7 0.0 1.4 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Parvo_NS1 PF01057.12 gi|284167034|ref|YP_003405313.1| - 0.15 10.8 0.0 0.24 10.2 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_24 PF13479.1 gi|284167034|ref|YP_003405313.1| - 0.22 11.0 1.7 0.21 11.1 0.3 1.9 2 1 0 2 2 1 0 AAA domain