#                                                                           --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                       accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------             -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
BPD_transp_1	PF00528.22	gi|222481152|ref|YP_002567388.1|	-	2.3e-37	128.5	12.7	3.4e-37	128.0	12.7	1.3	1	0	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF3021	PF11457.8	gi|222481152|ref|YP_002567388.1|	-	6.2	7.2	9.7	1.8	8.9	0.4	2.7	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3021)
BPD_transp_1	PF00528.22	gi|222481153|ref|YP_002567389.1|	-	1.2e-28	100.1	9.0	1.2e-28	100.1	9.0	2.2	2	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|222481153|ref|YP_002567389.1|	-	1.9e-11	43.7	0.2	1.9e-11	43.7	0.2	2.4	3	0	0	3	3	3	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
ABC_tran	PF00005.27	gi|222481154|ref|YP_002567390.1|	-	2e-27	96.4	0.0	2.6e-27	96.0	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|222481154|ref|YP_002567390.1|	-	6.6e-20	71.4	0.1	1.3e-19	70.5	0.1	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|222481154|ref|YP_002567390.1|	-	4.8e-05	23.3	0.8	0.027	14.3	0.4	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|222481154|ref|YP_002567390.1|	-	0.0024	18.2	1.3	0.039	14.2	1.3	2.2	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|222481154|ref|YP_002567390.1|	-	0.012	15.0	0.0	3	7.2	0.0	2.1	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
AAA_7	PF12775.7	gi|222481154|ref|YP_002567390.1|	-	0.068	12.7	0.0	0.13	11.7	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_29	PF13555.6	gi|222481154|ref|YP_002567390.1|	-	0.12	12.2	0.0	0.22	11.3	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|222481154|ref|YP_002567390.1|	-	0.12	12.7	0.3	0.31	11.4	0.3	1.9	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_23	PF13476.6	gi|222481154|ref|YP_002567390.1|	-	0.19	12.2	0.0	0.27	11.7	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
ABC_tran	PF00005.27	gi|222481155|ref|YP_002567391.1|	-	1.3e-36	126.1	0.0	1.8e-36	125.7	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|222481155|ref|YP_002567391.1|	-	1.4e-18	67.2	1.6	1.4e-18	67.2	1.6	1.9	2	0	0	2	2	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|222481155|ref|YP_002567391.1|	-	6.2e-09	36.1	2.3	4.2e-06	26.8	0.3	2.3	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|222481155|ref|YP_002567391.1|	-	4.3e-07	29.6	0.0	8.7e-07	28.6	0.0	1.4	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|222481155|ref|YP_002567391.1|	-	3e-05	24.3	0.4	0.00011	22.5	0.4	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|222481155|ref|YP_002567391.1|	-	0.00012	22.5	0.1	0.00023	21.6	0.1	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|222481155|ref|YP_002567391.1|	-	0.00039	20.1	0.2	0.00075	19.2	0.2	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
TniB	PF05621.11	gi|222481155|ref|YP_002567391.1|	-	0.00066	19.1	0.1	0.31	10.4	0.0	2.3	2	0	0	2	2	2	2	Bacterial	TniB	protein
AAA	PF00004.29	gi|222481155|ref|YP_002567391.1|	-	0.0022	18.4	0.0	0.05	14.0	0.0	2.2	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_25	PF13481.6	gi|222481155|ref|YP_002567391.1|	-	0.0032	17.1	0.1	0.63	9.6	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|222481155|ref|YP_002567391.1|	-	0.012	15.5	0.0	0.022	14.7	0.0	1.3	1	0	0	1	1	1	0	RsgA	GTPase
ATP-synt_ab	PF00006.25	gi|222481155|ref|YP_002567391.1|	-	0.022	14.4	0.1	0.061	13.0	0.1	1.6	1	1	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
G-alpha	PF00503.20	gi|222481155|ref|YP_002567391.1|	-	0.03	13.5	0.0	0.034	13.3	0.0	1.1	1	0	0	1	1	1	0	G-protein	alpha	subunit
NB-ARC	PF00931.22	gi|222481155|ref|YP_002567391.1|	-	0.033	13.4	0.1	0.057	12.6	0.1	1.5	1	1	0	1	1	1	0	NB-ARC	domain
AAA_30	PF13604.6	gi|222481155|ref|YP_002567391.1|	-	0.034	13.9	0.1	0.21	11.3	0.1	2.0	1	1	0	1	1	1	0	AAA	domain
Sigma54_activat	PF00158.26	gi|222481155|ref|YP_002567391.1|	-	0.039	13.7	0.2	0.3	10.8	0.0	2.0	2	0	0	2	2	2	0	Sigma-54	interaction	domain
AAA_24	PF13479.6	gi|222481155|ref|YP_002567391.1|	-	0.045	13.5	0.0	0.067	12.9	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|222481155|ref|YP_002567391.1|	-	0.046	13.6	0.1	0.11	12.4	0.1	1.6	1	0	0	1	1	1	0	NACHT	domain
AAA_5	PF07728.14	gi|222481155|ref|YP_002567391.1|	-	0.048	13.7	0.1	0.9	9.5	0.0	2.2	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
IstB_IS21	PF01695.17	gi|222481155|ref|YP_002567391.1|	-	0.066	12.9	0.2	0.43	10.3	0.0	2.0	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
SbcCD_C	PF13558.6	gi|222481155|ref|YP_002567391.1|	-	0.12	12.7	0.1	1.6	9.0	0.1	2.2	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
DUF87	PF01935.17	gi|222481155|ref|YP_002567391.1|	-	0.15	12.2	0.2	0.31	11.1	0.2	1.5	1	0	0	1	1	1	0	Helicase	HerA,	central	domain
Zeta_toxin	PF06414.12	gi|222481155|ref|YP_002567391.1|	-	0.18	11.1	0.0	0.29	10.4	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
AAA_15	PF13175.6	gi|222481155|ref|YP_002567391.1|	-	0.18	11.5	0.0	0.3	10.8	0.0	1.3	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_13	PF13166.6	gi|222481155|ref|YP_002567391.1|	-	0.19	10.4	0.0	0.94	8.0	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
Amidohydro_1	PF01979.20	gi|222481156|ref|YP_002567392.1|	-	1.1e-20	74.3	0.0	2.1e-20	73.3	0.0	1.5	1	1	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|222481156|ref|YP_002567392.1|	-	5.1e-13	49.3	8.8	4.9e-09	36.2	0.2	2.8	2	1	1	3	3	3	2	Amidohydrolase	family
Peptidase_M20	PF01546.28	gi|222481157|ref|YP_002567393.1|	-	2.3e-24	86.3	1.0	4.4e-24	85.3	1.0	1.5	1	1	0	1	1	1	1	Peptidase	family	M20/M25/M40
Peptidase_M28	PF04389.17	gi|222481157|ref|YP_002567393.1|	-	6e-09	35.9	0.0	1.1e-08	35.0	0.0	1.4	1	0	0	1	1	1	1	Peptidase	family	M28
M20_dimer	PF07687.14	gi|222481157|ref|YP_002567393.1|	-	0.0025	17.7	0.0	0.0061	16.5	0.0	1.6	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
DUF3830	PF12903.7	gi|222481158|ref|YP_002567394.1|	-	2e-47	160.5	0.0	2.3e-47	160.4	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3830)
2-Hacid_dh_C	PF02826.19	gi|222481159|ref|YP_002567395.1|	-	9e-48	162.0	0.0	1.3e-47	161.4	0.0	1.2	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.30	gi|222481159|ref|YP_002567395.1|	-	8.7e-07	28.7	0.0	9.9e-07	28.5	0.0	1.2	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
F420_oxidored	PF03807.17	gi|222481159|ref|YP_002567395.1|	-	0.045	14.3	0.1	0.36	11.4	0.0	2.3	2	1	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_2	PF03446.15	gi|222481159|ref|YP_002567395.1|	-	0.047	13.8	0.1	0.077	13.2	0.1	1.3	1	0	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
FAA_hydrolase	PF01557.18	gi|222481160|ref|YP_002567396.1|	-	2.2e-46	158.3	0.0	2.6e-46	158.1	0.0	1.0	1	0	0	1	1	1	1	Fumarylacetoacetate	(FAA)	hydrolase	family
HTH_10	PF04967.12	gi|222481161|ref|YP_002567397.1|	-	1.9e-20	72.4	0.1	3.7e-20	71.5	0.1	1.5	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Response_reg	PF00072.24	gi|222481161|ref|YP_002567397.1|	-	1.5e-16	60.6	0.0	3.2e-16	59.5	0.0	1.5	1	0	0	1	1	1	1	Response	regulator	receiver	domain
GAF_2	PF13185.6	gi|222481161|ref|YP_002567397.1|	-	2.5e-10	40.8	0.1	2.7e-09	37.4	0.0	2.5	2	0	0	2	2	2	1	GAF	domain
BAT	PF15915.5	gi|222481161|ref|YP_002567397.1|	-	5.4e-08	32.9	4.2	5.4e-08	32.9	4.2	2.8	3	1	0	3	3	3	1	GAF	and	HTH_10	associated	domain
Sigma70_r4	PF04545.16	gi|222481161|ref|YP_002567397.1|	-	0.0002	20.8	0.1	0.00067	19.1	0.1	1.9	1	0	0	1	1	1	1	Sigma-70,	region	4
GerE	PF00196.19	gi|222481161|ref|YP_002567397.1|	-	0.0052	16.3	0.0	0.047	13.2	0.0	2.2	1	1	0	1	1	1	1	Bacterial	regulatory	proteins,	luxR	family
GAF	PF01590.26	gi|222481161|ref|YP_002567397.1|	-	0.011	16.4	0.1	0.056	14.1	0.0	2.2	2	0	0	2	2	2	0	GAF	domain
HTH_Tnp_1_2	PF13022.6	gi|222481161|ref|YP_002567397.1|	-	0.029	14.5	0.0	0.058	13.6	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	of	insertion	element	transposase
OKR_DC_1_N	PF03709.15	gi|222481161|ref|YP_002567397.1|	-	0.056	13.7	0.0	0.12	12.6	0.0	1.6	1	0	0	1	1	1	0	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
MarR_2	PF12802.7	gi|222481161|ref|YP_002567397.1|	-	0.059	13.3	0.0	0.33	10.9	0.1	2.3	2	0	0	2	2	2	0	MarR	family
Cas9-BH	PF16593.5	gi|222481161|ref|YP_002567397.1|	-	0.084	12.6	0.9	0.16	11.7	0.9	1.5	1	0	0	1	1	1	0	Bridge	helix	of	CRISPR-associated	endonuclease	Cas9
HTH_24	PF13412.6	gi|222481161|ref|YP_002567397.1|	-	0.16	11.6	0.0	0.45	10.1	0.0	1.8	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Glyco_tranf_2_3	PF13641.6	gi|222481162|ref|YP_002567398.1|	-	6.8e-36	124.3	0.0	8.7e-36	123.9	0.0	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glycos_transf_2	PF00535.26	gi|222481162|ref|YP_002567398.1|	-	3.5e-32	111.5	0.0	5.3e-32	111.0	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_trans_2_3	PF13632.6	gi|222481162|ref|YP_002567398.1|	-	5e-29	101.6	0.8	5e-29	101.6	0.8	2.6	2	1	0	2	2	2	1	Glycosyl	transferase	family	group	2
Chitin_synth_2	PF03142.15	gi|222481162|ref|YP_002567398.1|	-	1.8e-20	73.1	2.6	2.4e-09	36.4	0.0	3.1	2	1	1	3	3	3	3	Chitin	synthase
Glyco_transf_21	PF13506.6	gi|222481162|ref|YP_002567398.1|	-	1.7e-18	66.7	0.0	2.6e-18	66.1	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Glyco_tranf_2_2	PF10111.9	gi|222481162|ref|YP_002567398.1|	-	5e-09	36.0	0.0	1.1e-08	34.9	0.0	1.4	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.6	gi|222481162|ref|YP_002567398.1|	-	0.00088	19.7	0.0	0.0019	18.7	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
DNA_pol3_theta	PF06440.11	gi|222481162|ref|YP_002567398.1|	-	0.18	11.5	0.1	0.54	10.0	0.2	1.8	1	1	0	1	1	1	0	DNA	polymerase	III,	theta	subunit
TMEM52	PF14979.6	gi|222481162|ref|YP_002567398.1|	-	0.19	11.7	0.1	0.73	9.7	0.0	2.0	2	0	0	2	2	2	0	Transmembrane	52
DUF2207	PF09972.9	gi|222481162|ref|YP_002567398.1|	-	4.5	5.9	7.5	12	4.5	0.3	2.3	2	0	0	2	2	2	0	Predicted	membrane	protein	(DUF2207)
DUF2334	PF10096.9	gi|222481163|ref|YP_002567399.1|	-	8.3e-23	81.1	0.0	1e-22	80.8	0.0	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2334)
Polysacc_deac_1	PF01522.21	gi|222481163|ref|YP_002567399.1|	-	5.8e-06	26.2	0.0	1.1e-05	25.3	0.0	1.5	1	0	0	1	1	1	1	Polysaccharide	deacetylase
Serpin	PF00079.20	gi|222481165|ref|YP_002567401.1|	-	2.1e-19	70.1	0.0	2.6e-19	69.8	0.0	1.1	1	0	0	1	1	1	1	Serpin	(serine	protease	inhibitor)
HTH_24	PF13412.6	gi|222481166|ref|YP_002567402.1|	-	6.6e-07	28.8	0.1	9.9e-07	28.2	0.1	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
GntR	PF00392.21	gi|222481166|ref|YP_002567402.1|	-	8.4e-07	28.5	1.0	1.3e-06	27.9	1.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
MarR_2	PF12802.7	gi|222481166|ref|YP_002567402.1|	-	3.6e-06	26.8	0.9	4.7e-06	26.4	0.9	1.1	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.12	gi|222481166|ref|YP_002567402.1|	-	7.5e-06	25.8	0.4	1e-05	25.4	0.4	1.2	1	0	0	1	1	1	1	HTH	domain
MarR	PF01047.22	gi|222481166|ref|YP_002567402.1|	-	0.0011	18.8	0.2	0.0017	18.3	0.2	1.2	1	0	0	1	1	1	1	MarR	family
HTH_AsnC-type	PF13404.6	gi|222481166|ref|YP_002567402.1|	-	0.0012	18.7	0.6	0.0025	17.6	0.6	1.5	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_Mga	PF08280.11	gi|222481166|ref|YP_002567402.1|	-	0.0015	18.5	0.0	0.0023	17.9	0.0	1.2	1	0	0	1	1	1	1	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
PaaX	PF07848.12	gi|222481166|ref|YP_002567402.1|	-	0.0049	17.1	0.2	0.0061	16.7	0.2	1.3	1	0	0	1	1	1	1	PaaX-like	protein
HTH_28	PF13518.6	gi|222481166|ref|YP_002567402.1|	-	0.0053	16.9	0.1	0.0073	16.4	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|222481166|ref|YP_002567402.1|	-	0.013	15.4	0.1	0.015	15.2	0.1	1.2	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
TrmB	PF01978.19	gi|222481166|ref|YP_002567402.1|	-	0.023	14.6	0.1	0.029	14.2	0.1	1.2	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_29	PF13551.6	gi|222481166|ref|YP_002567402.1|	-	0.027	14.5	0.1	0.035	14.1	0.1	1.2	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_36	PF13730.6	gi|222481166|ref|YP_002567402.1|	-	0.028	14.4	0.1	0.2	11.6	0.1	2.1	1	1	0	1	1	1	0	Helix-turn-helix	domain
Rrf2	PF02082.20	gi|222481166|ref|YP_002567402.1|	-	0.047	14.0	0.2	0.063	13.6	0.2	1.2	1	0	0	1	1	1	0	Transcriptional	regulator
NUP50	PF08911.11	gi|222481166|ref|YP_002567402.1|	-	0.11	13.2	0.3	0.15	12.8	0.3	1.4	1	0	0	1	1	1	0	NUP50	(Nucleoporin	50	kDa)
DoxX_3	PF13781.6	gi|222481168|ref|YP_002567404.1|	-	0.0016	19.0	0.1	0.0028	18.3	0.1	1.4	1	0	0	1	1	1	1	DoxX-like	family
MauE	PF07291.11	gi|222481168|ref|YP_002567404.1|	-	0.036	13.8	0.1	0.059	13.1	0.1	1.2	1	0	0	1	1	1	0	Methylamine	utilisation	protein	MauE
DDE_Tnp_1	PF01609.21	gi|222481169|ref|YP_002567405.1|	-	8.2e-23	81.2	0.0	1.2e-22	80.7	0.0	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_6	PF13751.6	gi|222481169|ref|YP_002567405.1|	-	0.0015	18.7	0.0	0.0027	17.9	0.0	1.3	1	0	0	1	1	1	1	Transposase	DDE	domain
PilZ	PF07238.14	gi|222481170|ref|YP_002567406.1|	-	0.045	14.1	0.0	0.087	13.2	0.0	1.4	1	1	0	1	1	1	0	PilZ	domain
Rad9_Rad53_bind	PF08605.10	gi|222481171|ref|YP_002567407.1|	-	0.075	13.2	0.1	0.076	13.2	0.1	1.1	1	0	0	1	1	1	0	Fungal	Rad9-like	Rad53-binding
GluRS_N	PF18466.1	gi|222481171|ref|YP_002567407.1|	-	0.12	12.8	2.5	0.16	12.4	2.5	1.2	1	0	0	1	1	1	0	Glutamate--tRNA	ligase	N-terminal	domain
TaqI_C	PF12950.7	gi|222481172|ref|YP_002567408.1|	-	2.7e-18	66.2	0.1	6.4e-18	65.0	0.1	1.7	1	0	0	1	1	1	1	TaqI-like	C-terminal	specificity	domain
Eco57I	PF07669.11	gi|222481172|ref|YP_002567408.1|	-	4.4e-14	52.9	0.0	1.4e-13	51.2	0.0	1.9	1	0	0	1	1	1	1	Eco57I	restriction-modification	methylase
N6_Mtase	PF02384.16	gi|222481172|ref|YP_002567408.1|	-	2.2e-12	46.9	0.0	2.4e-05	23.7	0.0	3.4	2	1	0	2	2	2	2	N-6	DNA	Methylase
Helicase_C	PF00271.31	gi|222481173|ref|YP_002567409.1|	-	2.4e-23	82.6	0.0	9.8e-22	77.4	0.0	2.5	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
SNF2_N	PF00176.23	gi|222481173|ref|YP_002567409.1|	-	1.3e-18	66.9	0.0	5.4e-17	61.6	0.0	2.2	1	1	0	1	1	1	1	SNF2	family	N-terminal	domain
ResIII	PF04851.15	gi|222481173|ref|YP_002567409.1|	-	6.5e-14	52.3	0.0	6.5e-14	52.3	0.0	2.2	3	0	0	3	3	3	1	Type	III	restriction	enzyme,	res	subunit
RapA_C	PF12137.8	gi|222481173|ref|YP_002567409.1|	-	2.4e-06	26.8	4.7	2.4e-06	26.8	4.7	3.2	2	1	0	2	2	2	1	RNA	polymerase	recycling	family	C-terminal
AAA_34	PF13872.6	gi|222481173|ref|YP_002567409.1|	-	2.7e-05	23.2	0.0	4.7e-05	22.4	0.0	1.3	1	0	0	1	1	1	1	P-loop	containing	NTP	hydrolase	pore-1
DEAD	PF00270.29	gi|222481173|ref|YP_002567409.1|	-	3.6e-05	23.6	0.0	0.0001	22.1	0.0	1.8	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
Helicase_RecD	PF05127.14	gi|222481173|ref|YP_002567409.1|	-	0.061	13.2	0.0	0.19	11.6	0.0	1.9	1	0	0	1	1	1	0	Helicase
U1snRNP70_N	PF12220.8	gi|222481173|ref|YP_002567409.1|	-	0.32	11.7	6.7	0.17	12.6	1.3	2.9	2	0	0	2	2	2	0	U1	small	nuclear	ribonucleoprotein	of	70kDa	MW	N	terminal
PilJ	PF13675.6	gi|222481173|ref|YP_002567409.1|	-	2.9	7.9	11.1	1.7	8.7	1.4	3.4	3	0	0	3	3	3	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
TBP	PF00352.21	gi|222481174|ref|YP_002567410.1|	-	9.4e-38	128.1	0.0	1.1e-19	70.1	0.0	2.0	2	0	0	2	2	2	2	Transcription	factor	TFIID	(or	TATA-binding	protein,	TBP)
DUF3378	PF11858.8	gi|222481174|ref|YP_002567410.1|	-	0.0029	17.7	0.0	3.4	7.9	0.0	2.3	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF3378)
Mntp	PF02659.15	gi|222481174|ref|YP_002567410.1|	-	0.049	13.4	0.0	1.9	8.2	0.0	2.1	2	0	0	2	2	2	0	Putative	manganese	efflux	pump
DUF262	PF03235.14	gi|222481175|ref|YP_002567411.1|	-	1.8e-29	103.5	5.5	1.8e-29	103.5	5.5	2.3	2	1	0	2	2	2	1	Protein	of	unknown	function	DUF262
DUF1524	PF07510.11	gi|222481175|ref|YP_002567411.1|	-	5.9e-07	29.4	0.6	1.8e-06	27.9	0.6	1.7	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1524)
HNH_4	PF13395.6	gi|222481175|ref|YP_002567411.1|	-	0.002	18.0	1.0	0.0078	16.1	1.0	2.0	1	1	0	1	1	1	1	HNH	endonuclease
Ferritin-like	PF12902.7	gi|222481175|ref|YP_002567411.1|	-	0.026	14.4	0.2	0.065	13.1	0.0	1.7	2	0	0	2	2	2	0	Ferritin-like
CHDNT	PF08073.12	gi|222481176|ref|YP_002567412.1|	-	0.23	11.5	0.0	0.33	10.9	0.0	1.2	1	0	0	1	1	1	0	CHDNT	(NUC034)	domain
HEPN-like_int	PF18867.1	gi|222481178|ref|YP_002567414.1|	-	0.17	11.8	0.0	0.28	11.0	0.0	1.3	1	0	0	1	1	1	0	HEPN-like	integron	domain
QueC	PF06508.13	gi|222481179|ref|YP_002567415.1|	-	1.3e-23	83.6	0.0	1.5e-23	83.4	0.0	1.1	1	0	0	1	1	1	1	Queuosine	biosynthesis	protein	QueC
Asn_synthase	PF00733.21	gi|222481179|ref|YP_002567415.1|	-	5.7e-05	22.9	0.0	7.1e-05	22.6	0.0	1.2	1	0	0	1	1	1	1	Asparagine	synthase
tRNA_Me_trans	PF03054.16	gi|222481179|ref|YP_002567415.1|	-	0.2	10.4	1.3	1.1	7.9	1.3	1.9	1	1	0	1	1	1	0	tRNA	methyl	transferase
Nuc_deoxyrib_tr	PF05014.15	gi|222481180|ref|YP_002567416.1|	-	2.9e-18	66.2	0.0	1.5e-17	63.9	0.0	2.0	2	0	0	2	2	2	1	Nucleoside	2-deoxyribosyltransferase
PfkB	PF00294.24	gi|222481180|ref|YP_002567416.1|	-	3e-11	43.2	0.8	4.7e-11	42.6	0.8	1.2	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Nuc_deoxyri_tr2	PF15891.5	gi|222481180|ref|YP_002567416.1|	-	4.9e-06	26.8	0.0	1.1e-05	25.7	0.0	1.6	1	0	0	1	1	1	1	Nucleoside	2-deoxyribosyltransferase	like
DUF4406	PF14359.6	gi|222481180|ref|YP_002567416.1|	-	0.0036	17.7	0.0	0.0083	16.6	0.0	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4406)
HIRAN	PF08797.11	gi|222481181|ref|YP_002567417.1|	-	0.017	15.0	0.0	0.038	13.9	0.0	1.6	1	1	0	1	1	1	0	HIRAN	domain
DUF4328	PF14219.6	gi|222481182|ref|YP_002567418.1|	-	0.011	15.3	0.1	0.011	15.3	0.1	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4328)
Trp_oprn_chp	PF09534.10	gi|222481182|ref|YP_002567418.1|	-	0.042	13.6	0.1	0.12	12.2	0.0	1.8	2	0	0	2	2	2	0	Tryptophan-associated	transmembrane	protein	(Trp_oprn_chp)
Neurensin	PF14927.6	gi|222481182|ref|YP_002567418.1|	-	0.085	12.6	0.2	0.29	10.8	0.1	1.8	2	0	0	2	2	2	0	Neurensin
COPI_assoc	PF08507.10	gi|222481182|ref|YP_002567418.1|	-	0.11	12.5	2.1	9.5	6.3	0.1	2.3	2	0	0	2	2	2	0	COPI	associated	protein
DUF3040	PF11239.8	gi|222481182|ref|YP_002567418.1|	-	3.3	8.1	7.6	3.8	7.8	1.4	2.4	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3040)
DUF1863	PF08937.11	gi|222481183|ref|YP_002567419.1|	-	6.2e-15	55.7	1.6	7.5e-15	55.4	1.6	1.1	1	0	0	1	1	1	1	MTH538	TIR-like	domain	(DUF1863)
TIR_2	PF13676.6	gi|222481183|ref|YP_002567419.1|	-	0.00094	19.8	0.1	0.0012	19.4	0.1	1.2	1	0	0	1	1	1	1	TIR	domain
STALD	PF18185.1	gi|222481183|ref|YP_002567419.1|	-	0.015	14.6	0.0	0.019	14.3	0.0	1.2	1	0	0	1	1	1	0	Sir2-	and	TIR-associating	SLOG	family
DUF3472	PF11958.8	gi|222481183|ref|YP_002567419.1|	-	0.026	15.0	0.0	0.042	14.3	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3472)
PS_pyruv_trans	PF04230.13	gi|222481183|ref|YP_002567419.1|	-	0.029	14.3	0.1	0.068	13.1	0.1	1.5	1	1	1	2	2	2	0	Polysaccharide	pyruvyl	transferase
DUF1863	PF08937.11	gi|222481184|ref|YP_002567420.1|	-	4.8e-15	56.0	0.0	6.9e-15	55.5	0.0	1.2	1	0	0	1	1	1	1	MTH538	TIR-like	domain	(DUF1863)
TIR_2	PF13676.6	gi|222481184|ref|YP_002567420.1|	-	1.3e-05	25.8	0.1	2.1e-05	25.1	0.1	1.3	1	0	0	1	1	1	1	TIR	domain
DDE_Tnp_1	PF01609.21	gi|222481186|ref|YP_002567422.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
HATPase_c	PF02518.26	gi|222481187|ref|YP_002567423.1|	-	7.7e-21	74.7	0.1	1.4e-20	73.9	0.1	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA_7TM	PF16927.5	gi|222481187|ref|YP_002567423.1|	-	2.2e-16	60.5	22.2	3.3e-16	60.0	22.2	1.2	1	0	0	1	1	1	1	N-terminal	7TM	region	of	histidine	kinase
HisKA	PF00512.25	gi|222481187|ref|YP_002567423.1|	-	4.4e-12	45.9	0.2	1.6e-11	44.0	0.2	2.1	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_8	PF13188.7	gi|222481187|ref|YP_002567423.1|	-	6.1e-06	26.1	0.4	0.011	15.7	0.0	2.9	2	0	0	2	2	2	2	PAS	domain
PAS_10	PF13596.6	gi|222481187|ref|YP_002567423.1|	-	0.0014	19.2	0.0	0.0031	18.1	0.0	1.6	1	0	0	1	1	1	1	PAS	domain
HATPase_c_2	PF13581.6	gi|222481187|ref|YP_002567423.1|	-	0.0086	16.0	0.1	0.021	14.8	0.1	1.8	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HATPase_c_3	PF13589.6	gi|222481187|ref|YP_002567423.1|	-	0.1	12.4	0.0	0.28	11.0	0.0	1.7	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS	PF00989.25	gi|222481187|ref|YP_002567423.1|	-	0.11	12.5	0.0	0.31	11.1	0.0	1.7	1	0	0	1	1	1	0	PAS	fold
HATPase_c_5	PF14501.6	gi|222481187|ref|YP_002567423.1|	-	0.13	12.1	0.0	0.61	10.0	0.0	2.0	1	1	0	1	1	1	0	GHKL	domain
MASE5	PF17178.4	gi|222481187|ref|YP_002567423.1|	-	0.99	9.2	5.1	0.75	9.6	1.7	2.3	2	1	0	2	2	2	0	Membrane-associated	sensor
Pox_VLTF3	PF04947.14	gi|222481188|ref|YP_002567424.1|	-	0.0069	16.1	0.2	0.0087	15.8	0.2	1.2	1	0	0	1	1	1	1	Poxvirus	Late	Transcription	Factor	VLTF3	like
PG_binding_4	PF12229.8	gi|222481188|ref|YP_002567424.1|	-	0.027	14.8	0.3	0.034	14.4	0.3	1.0	1	0	0	1	1	1	0	Putative	peptidoglycan	binding	domain
DUF4256	PF14066.6	gi|222481188|ref|YP_002567424.1|	-	0.056	13.1	0.2	0.056	13.1	0.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4256)
EnY2	PF10163.9	gi|222481188|ref|YP_002567424.1|	-	0.061	13.7	1.5	0.1	13.0	1.5	1.4	1	1	0	1	1	1	0	Transcription	factor	e(y)2
PIN_2	PF10130.9	gi|222481189|ref|YP_002567425.1|	-	2.2e-34	118.5	0.5	2.5e-34	118.4	0.5	1.0	1	0	0	1	1	1	1	PIN	domain
PIN_3	PF13470.6	gi|222481189|ref|YP_002567425.1|	-	8e-06	26.6	0.8	1.1e-05	26.2	0.8	1.2	1	0	0	1	1	1	1	PIN	domain
PIN	PF01850.21	gi|222481189|ref|YP_002567425.1|	-	0.0011	19.4	1.6	0.0019	18.7	1.6	1.3	1	1	0	1	1	1	1	PIN	domain
PIN_12	PF16289.5	gi|222481189|ref|YP_002567425.1|	-	0.043	14.3	0.0	0.056	13.9	0.0	1.2	1	0	0	1	1	1	0	PIN	domain
HTH_IclR	PF09339.10	gi|222481190|ref|YP_002567426.1|	-	0.00062	19.5	0.0	0.27	11.0	0.0	2.9	2	0	0	2	2	2	2	IclR	helix-turn-helix	domain
HTH_24	PF13412.6	gi|222481190|ref|YP_002567426.1|	-	0.16	11.5	0.0	3.8	7.2	0.0	2.5	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
TRAM	PF01938.20	gi|222481191|ref|YP_002567427.1|	-	8.2e-10	38.5	2.2	1.2e-09	38.0	2.2	1.3	1	0	0	1	1	1	1	TRAM	domain
Hexapep	PF00132.24	gi|222481191|ref|YP_002567427.1|	-	0.075	12.8	0.1	0.13	12.0	0.1	1.4	1	0	0	1	1	1	0	Bacterial	transferase	hexapeptide	(six	repeats)
SRR1	PF07985.12	gi|222481191|ref|YP_002567427.1|	-	0.11	12.6	0.0	0.17	11.9	0.0	1.3	1	0	0	1	1	1	0	SRR1
HTH_24	PF13412.6	gi|222481192|ref|YP_002567428.1|	-	1.4e-07	30.9	0.0	2.1e-07	30.4	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.12	gi|222481192|ref|YP_002567428.1|	-	4.7e-06	26.4	0.1	6.4e-06	26.0	0.1	1.2	1	0	0	1	1	1	1	HTH	domain
MarR	PF01047.22	gi|222481192|ref|YP_002567428.1|	-	5.6e-06	26.2	0.0	8.8e-06	25.6	0.0	1.3	1	0	0	1	1	1	1	MarR	family
MarR_2	PF12802.7	gi|222481192|ref|YP_002567428.1|	-	9.7e-06	25.4	0.1	1.2e-05	25.0	0.1	1.2	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.20	gi|222481192|ref|YP_002567428.1|	-	0.00019	21.2	0.0	0.00029	20.7	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|222481192|ref|YP_002567428.1|	-	0.00024	21.1	0.0	0.00036	20.6	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_Mga	PF08280.11	gi|222481192|ref|YP_002567428.1|	-	0.00027	20.9	0.0	0.00035	20.5	0.0	1.2	1	0	0	1	1	1	1	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
HTH_DeoR	PF08220.12	gi|222481192|ref|YP_002567428.1|	-	0.00028	20.6	0.1	0.00041	20.0	0.1	1.2	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
TFIIE_alpha	PF02002.17	gi|222481192|ref|YP_002567428.1|	-	0.00051	19.9	0.0	0.00063	19.6	0.0	1.2	1	0	0	1	1	1	1	TFIIE	alpha	subunit
GntR	PF00392.21	gi|222481192|ref|YP_002567428.1|	-	0.0014	18.2	0.2	0.0019	17.8	0.2	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_9	PF08221.11	gi|222481192|ref|YP_002567428.1|	-	0.0027	17.8	0.1	0.0046	17.0	0.1	1.4	1	0	0	1	1	1	1	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
HTH_42	PF06224.12	gi|222481192|ref|YP_002567428.1|	-	0.0034	17.0	0.0	0.0037	16.9	0.0	1.0	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_Crp_2	PF13545.6	gi|222481192|ref|YP_002567428.1|	-	0.0042	17.0	0.0	0.0051	16.8	0.0	1.2	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_CodY	PF08222.11	gi|222481192|ref|YP_002567428.1|	-	0.011	15.3	0.1	0.018	14.6	0.1	1.3	1	0	0	1	1	1	0	CodY	helix-turn-helix	domain
HTH_27	PF13463.6	gi|222481192|ref|YP_002567428.1|	-	0.012	16.1	0.2	0.019	15.4	0.2	1.4	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
Rrf2	PF02082.20	gi|222481192|ref|YP_002567428.1|	-	0.016	15.6	0.1	0.024	15.0	0.1	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_IclR	PF09339.10	gi|222481192|ref|YP_002567428.1|	-	0.023	14.5	0.2	0.037	13.8	0.2	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
RepL	PF05732.11	gi|222481192|ref|YP_002567428.1|	-	0.027	13.9	0.0	0.031	13.7	0.0	1.1	1	0	0	1	1	1	0	Firmicute	plasmid	replication	protein	(RepL)
HTH_54	PF18607.1	gi|222481192|ref|YP_002567428.1|	-	0.041	13.9	0.0	0.049	13.7	0.0	1.1	1	0	0	1	1	1	0	ParA	helix	turn	helix	domain
HTH_36	PF13730.6	gi|222481192|ref|YP_002567428.1|	-	0.042	13.8	0.1	0.074	13.0	0.1	1.5	1	1	0	1	1	1	0	Helix-turn-helix	domain
TrmB	PF01978.19	gi|222481192|ref|YP_002567428.1|	-	0.047	13.6	0.2	0.065	13.1	0.2	1.2	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_AsnC-type	PF13404.6	gi|222481192|ref|YP_002567428.1|	-	0.064	13.1	0.0	0.1	12.5	0.0	1.3	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
Ribosomal_S25	PF03297.15	gi|222481192|ref|YP_002567428.1|	-	0.07	13.3	0.0	0.09	13.0	0.0	1.2	1	0	0	1	1	1	0	S25	ribosomal	protein
HTH_41	PF14502.6	gi|222481192|ref|YP_002567428.1|	-	0.092	12.5	0.0	0.16	11.7	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
MerR	PF00376.23	gi|222481192|ref|YP_002567428.1|	-	0.13	12.0	0.1	0.24	11.2	0.1	1.4	1	0	0	1	1	1	0	MerR	family	regulatory	protein
HEAT_2	PF13646.6	gi|222481193|ref|YP_002567429.1|	-	1e-05	25.8	3.5	1.3e-05	25.5	0.6	2.0	2	0	0	2	2	2	1	HEAT	repeats
DUF883	PF05957.13	gi|222481193|ref|YP_002567429.1|	-	3.7	8.2	7.8	2	9.1	4.4	2.0	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF883)
DUF2800	PF10926.8	gi|222481194|ref|YP_002567430.1|	-	0.0014	18.0	0.0	0.0026	17.1	0.0	1.3	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF2800)
E1_dh	PF00676.20	gi|222481194|ref|YP_002567430.1|	-	0.11	11.4	1.7	0.17	10.8	1.7	1.2	1	0	0	1	1	1	0	Dehydrogenase	E1	component
DASH_Dam1	PF08653.10	gi|222481194|ref|YP_002567430.1|	-	0.17	11.7	0.3	0.59	10.0	0.1	2.0	2	0	0	2	2	2	0	DASH	complex	subunit	Dam1
FlaC_arch	PF05377.11	gi|222481194|ref|YP_002567430.1|	-	0.19	12.2	2.0	2.2	8.7	0.4	3.0	3	0	0	3	3	3	0	Flagella	accessory	protein	C	(FlaC)
DivIC	PF04977.15	gi|222481194|ref|YP_002567430.1|	-	0.38	10.5	4.6	0.2	11.5	1.3	2.3	3	0	0	3	3	3	0	Septum	formation	initiator
Fzo_mitofusin	PF04799.13	gi|222481194|ref|YP_002567430.1|	-	0.74	9.4	2.4	1.5	8.4	0.4	2.0	2	0	0	2	2	2	0	fzo-like	conserved	region
zf-ribbon_3	PF13248.6	gi|222481195|ref|YP_002567431.1|	-	0.00011	21.5	1.3	0.00015	21.1	1.3	1.2	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.7	gi|222481195|ref|YP_002567431.1|	-	0.00057	19.9	0.4	0.0006	19.8	0.4	1.1	1	0	0	1	1	1	1	Double	zinc	ribbon
HypA	PF01155.19	gi|222481195|ref|YP_002567431.1|	-	0.0016	18.5	0.5	0.0018	18.3	0.5	1.0	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc_ribbon_15	PF17032.5	gi|222481195|ref|YP_002567431.1|	-	0.005	17.6	0.4	0.0053	17.5	0.4	1.1	1	0	0	1	1	1	1	zinc-ribbon	family
zinc_ribbon_2	PF13240.6	gi|222481195|ref|YP_002567431.1|	-	0.0061	16.2	3.5	0.0087	15.7	3.5	1.2	1	0	0	1	1	1	1	zinc-ribbon	domain
zf-UBR	PF02207.20	gi|222481195|ref|YP_002567431.1|	-	0.013	15.7	0.3	0.015	15.5	0.3	1.1	1	0	0	1	1	1	0	Putative	zinc	finger	in	N-recognin	(UBR	box)
Zn_Tnp_IS1595	PF12760.7	gi|222481195|ref|YP_002567431.1|	-	0.026	14.5	4.7	0.78	9.8	0.4	2.1	1	1	0	2	2	2	0	Transposase	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|222481195|ref|YP_002567431.1|	-	0.041	14.0	5.5	0.17	12.1	5.5	1.9	1	1	0	1	1	1	0	Zinc	ribbon	domain
RNA_POL_M_15KD	PF02150.16	gi|222481195|ref|YP_002567431.1|	-	0.14	12.1	2.6	0.17	11.7	0.1	2.0	1	1	1	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
zf_UBZ	PF18439.1	gi|222481195|ref|YP_002567431.1|	-	0.83	9.3	3.9	3.2	7.4	0.2	2.1	1	1	1	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
Pilin_N	PF07790.11	gi|222481196|ref|YP_002567432.1|	-	4e-16	59.7	0.0	7.9e-16	58.8	0.0	1.5	1	0	0	1	1	1	1	Archaeal	Type	IV	pilin,	N-terminal
Baseplate_J	PF04865.14	gi|222481196|ref|YP_002567432.1|	-	0.14	11.3	0.0	0.19	10.8	0.0	1.2	1	0	0	1	1	1	0	Baseplate	J-like	protein
DUF1616	PF07760.11	gi|222481196|ref|YP_002567432.1|	-	0.16	11.3	0.2	8.2	5.7	0.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1616)
DUF3961	PF13106.6	gi|222481197|ref|YP_002567433.1|	-	0.035	13.7	1.0	0.38	10.4	0.5	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3961)
DUF4131	PF13567.6	gi|222481197|ref|YP_002567433.1|	-	1.3	8.7	19.4	0.58	9.8	3.9	3.1	2	2	1	3	3	3	0	Domain	of	unknown	function	(DUF4131)
PadR	PF03551.14	gi|222481198|ref|YP_002567434.1|	-	1.4e-12	47.4	0.1	1.7e-12	47.1	0.1	1.2	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
DUF1495	PF07381.11	gi|222481198|ref|YP_002567434.1|	-	0.00085	19.1	0.0	0.0012	18.6	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain	(DUF1495)
HTH_27	PF13463.6	gi|222481198|ref|YP_002567434.1|	-	0.0011	19.4	0.0	0.0016	18.9	0.0	1.4	1	1	0	1	1	1	1	Winged	helix	DNA-binding	domain
DUF4364	PF14277.6	gi|222481198|ref|YP_002567434.1|	-	0.015	15.1	0.0	0.015	15.1	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
HTH_45	PF14947.6	gi|222481198|ref|YP_002567434.1|	-	0.029	14.3	0.1	0.039	14.0	0.1	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix
Replic_Relax	PF13814.6	gi|222481198|ref|YP_002567434.1|	-	0.046	13.8	0.0	0.056	13.5	0.0	1.1	1	0	0	1	1	1	0	Replication-relaxation
KicB	PF03882.14	gi|222481198|ref|YP_002567434.1|	-	0.086	13.0	0.0	0.11	12.7	0.0	1.2	1	0	0	1	1	1	0	MukF	winged-helix	domain
DDE_Tnp_1	PF01609.21	gi|222481200|ref|YP_002567436.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
Metallophos	PF00149.28	gi|222481201|ref|YP_002567437.1|	-	3.2e-05	24.5	1.8	0.00014	22.4	1.8	1.8	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|222481201|ref|YP_002567437.1|	-	0.0022	18.2	0.0	0.0039	17.4	0.0	1.5	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
DUF4268	PF14088.6	gi|222481202|ref|YP_002567438.1|	-	1.1e-34	119.3	0.6	1.1e-34	119.3	0.6	1.8	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4268)
Cdc6_C	PF09079.11	gi|222481203|ref|YP_002567439.1|	-	8.2e-14	51.4	0.1	2.2e-13	49.9	0.0	1.8	2	0	0	2	2	2	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|222481203|ref|YP_002567439.1|	-	1.1e-13	51.6	0.0	2.6e-13	50.4	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|222481203|ref|YP_002567439.1|	-	1.5e-08	35.2	0.8	2e-07	31.5	0.0	2.7	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.29	gi|222481203|ref|YP_002567439.1|	-	0.0013	19.1	0.0	0.0031	18.0	0.0	1.7	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
TniB	PF05621.11	gi|222481203|ref|YP_002567439.1|	-	0.0053	16.2	0.0	0.0091	15.4	0.0	1.3	1	0	0	1	1	1	1	Bacterial	TniB	protein
NACHT	PF05729.12	gi|222481203|ref|YP_002567439.1|	-	0.016	15.1	0.0	0.089	12.7	0.0	1.9	2	0	0	2	2	2	0	NACHT	domain
Pox_D5	PF03288.16	gi|222481203|ref|YP_002567439.1|	-	0.053	14.0	0.0	0.1	13.1	0.0	1.4	1	0	0	1	1	1	0	Poxvirus	D5	protein-like
PCP_red	PF08369.10	gi|222481203|ref|YP_002567439.1|	-	0.059	13.6	0.1	0.13	12.5	0.1	1.6	1	0	0	1	1	1	0	Proto-chlorophyllide	reductase	57	kD	subunit
MethyltransfD12	PF02086.15	gi|222481204|ref|YP_002567440.1|	-	1.6e-61	208.3	0.1	1.8e-61	208.1	0.1	1.0	1	0	0	1	1	1	1	D12	class	N6	adenine-specific	DNA	methyltransferase
AARP2CN	PF08142.12	gi|222481205|ref|YP_002567441.1|	-	0.12	12.5	0.0	0.56	10.3	0.0	2.1	1	1	0	1	1	1	0	AARP2CN	(NUC121)	domain
DDE_Tnp_1	PF01609.21	gi|222481206|ref|YP_002567442.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
CRISPR_Cas2	PF09827.9	gi|222481208|ref|YP_002567444.1|	-	1.8e-13	50.5	0.1	2.1e-13	50.2	0.1	1.1	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas2
GvpG	PF05120.12	gi|222481208|ref|YP_002567444.1|	-	0.14	12.2	0.0	0.22	11.6	0.0	1.3	1	1	0	1	1	1	0	Gas	vesicle	protein	G
Cas_Cas1	PF01867.16	gi|222481209|ref|YP_002567445.1|	-	3.1e-84	282.5	0.0	3.5e-84	282.3	0.0	1.0	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas1
Cas_Cas4	PF01930.17	gi|222481210|ref|YP_002567446.1|	-	7.9e-44	149.6	0.0	1e-43	149.3	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF83
PDDEXK_1	PF12705.7	gi|222481210|ref|YP_002567446.1|	-	8.7e-06	25.8	0.1	1e-05	25.6	0.1	1.1	1	0	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
HD_6	PF18019.1	gi|222481211|ref|YP_002567447.1|	-	1.1e-07	32.2	1.1	2.3e-07	31.1	1.1	1.5	1	0	0	1	1	1	1	HD	domain
HD	PF01966.22	gi|222481211|ref|YP_002567447.1|	-	4.4e-05	23.7	0.1	0.00012	22.3	0.1	1.7	1	0	0	1	1	1	1	HD	domain
ResIII	PF04851.15	gi|222481211|ref|YP_002567447.1|	-	0.0063	16.5	0.0	0.015	15.3	0.0	1.6	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.31	gi|222481211|ref|YP_002567447.1|	-	0.077	13.3	0.0	1.7	9.0	0.0	2.4	2	0	0	2	2	2	0	Helicase	conserved	C-terminal	domain
Cas_Cas5d	PF09704.10	gi|222481212|ref|YP_002567448.1|	-	2.4e-10	40.6	0.2	2.9e-10	40.4	0.2	1.2	1	0	0	1	1	1	1	CRISPR-associated	protein	(Cas_Cas5)
Cas_Cas7	PF05107.12	gi|222481213|ref|YP_002567449.1|	-	4.8e-45	154.1	0.0	5.6e-45	153.9	0.0	1.0	1	0	0	1	1	1	1	CRISPR-associated	protein	Cas7
Cas_TM1802	PF09484.10	gi|222481214|ref|YP_002567450.1|	-	4.8e-15	55.3	0.0	3.4e-09	36.0	0.0	2.1	2	0	0	2	2	2	2	CRISPR-associated	protein	TM1802	(cas_TM1802)
Cas_Cas6	PF01881.16	gi|222481215|ref|YP_002567451.1|	-	3.6e-16	60.0	0.0	4.6e-16	59.7	0.0	1.1	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas6
UPF0236	PF06782.11	gi|222481216|ref|YP_002567452.1|	-	9.7e-06	24.5	0.0	0.00026	19.8	0.0	2.1	2	0	0	2	2	2	2	Uncharacterised	protein	family	(UPF0236)
Transposase_mut	PF00872.18	gi|222481216|ref|YP_002567452.1|	-	0.00037	19.4	0.2	1	8.1	0.0	2.9	2	2	0	2	2	2	2	Transposase,	Mutator	family
TAT_signal	PF10518.9	gi|222481217|ref|YP_002567453.1|	-	0.015	15.1	0.1	0.026	14.3	0.1	1.4	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
AAA_31	PF13614.6	gi|222481220|ref|YP_002567456.1|	-	2e-25	89.7	0.0	2.8e-25	89.3	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|222481220|ref|YP_002567456.1|	-	9.1e-13	48.4	0.0	1.1e-12	48.1	0.0	1.4	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ArsA_ATPase	PF02374.15	gi|222481220|ref|YP_002567456.1|	-	1.2e-08	34.5	0.0	2e-08	33.8	0.0	1.3	1	0	0	1	1	1	1	Anion-transporting	ATPase
MipZ	PF09140.11	gi|222481220|ref|YP_002567456.1|	-	7.4e-08	32.0	0.0	9.1e-05	21.9	0.0	2.3	2	0	0	2	2	2	2	ATPase	MipZ
CBP_BcsQ	PF06564.12	gi|222481220|ref|YP_002567456.1|	-	9.5e-07	28.5	0.0	1.6e-06	27.7	0.0	1.3	1	0	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
SRP54	PF00448.22	gi|222481220|ref|YP_002567456.1|	-	2.2e-06	27.4	0.3	0.0034	17.0	0.2	2.3	2	0	0	2	2	2	2	SRP54-type	protein,	GTPase	domain
ParA	PF10609.9	gi|222481220|ref|YP_002567456.1|	-	2.1e-05	24.1	0.0	4.4e-05	23.1	0.0	1.5	1	0	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
CLP1_P	PF16575.5	gi|222481220|ref|YP_002567456.1|	-	0.001	18.9	0.0	0.013	15.3	0.0	2.3	2	0	0	2	2	2	1	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
AAA_24	PF13479.6	gi|222481220|ref|YP_002567456.1|	-	0.0012	18.6	0.0	0.0059	16.3	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|222481220|ref|YP_002567456.1|	-	0.0092	15.7	0.3	2.8	7.6	0.2	2.7	3	0	0	3	3	3	1	AAA	domain
Fer4_NifH	PF00142.18	gi|222481220|ref|YP_002567456.1|	-	0.028	13.9	0.0	0.091	12.2	0.0	1.8	1	0	0	1	1	1	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
AAA_18	PF13238.6	gi|222481220|ref|YP_002567456.1|	-	0.033	14.7	0.2	0.22	12.1	0.0	2.5	2	2	0	2	2	2	0	AAA	domain
DUF87	PF01935.17	gi|222481220|ref|YP_002567456.1|	-	0.037	14.1	0.1	0.052	13.6	0.1	1.7	1	1	0	1	1	1	0	Helicase	HerA,	central	domain
Glyco_transf_4	PF13439.6	gi|222481220|ref|YP_002567456.1|	-	0.079	13.0	0.1	0.62	10.0	0.1	2.2	1	1	0	1	1	1	0	Glycosyltransferase	Family	4
AAA_22	PF13401.6	gi|222481220|ref|YP_002567456.1|	-	0.17	12.2	0.2	1.8	8.8	0.2	2.3	1	1	0	1	1	1	0	AAA	domain
AAA_25	PF13481.6	gi|222481220|ref|YP_002567456.1|	-	0.22	11.1	2.3	0.44	10.1	0.8	2.2	2	1	0	2	2	2	0	AAA	domain
Phage_integrase	PF00589.22	gi|222481222|ref|YP_002567458.1|	-	0.0021	17.9	0.0	0.0039	17.0	0.0	1.4	1	0	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_1	PF02899.17	gi|222481222|ref|YP_002567458.1|	-	0.11	12.8	1.6	22	5.5	2.5	3.2	2	1	1	3	3	3	0	Phage	integrase,	N-terminal	SAM-like	domain
DNA_mis_repair	PF01119.19	gi|222481225|ref|YP_002567461.1|	-	0.12	12.1	0.1	0.22	11.2	0.1	1.4	1	0	0	1	1	1	0	DNA	mismatch	repair	protein,	C-terminal	domain
DUF499	PF04465.12	gi|222481226|ref|YP_002567462.1|	-	6.5e-12	44.1	11.8	2.2e-07	29.1	11.8	3.5	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF499)
AAA_22	PF13401.6	gi|222481226|ref|YP_002567462.1|	-	9.6e-05	22.7	0.0	0.00041	20.6	0.0	2.1	1	0	0	1	1	1	1	AAA	domain
DHHA2	PF02833.14	gi|222481226|ref|YP_002567462.1|	-	0.016	15.4	0.1	0.21	11.7	0.0	2.3	2	0	0	2	2	2	0	DHHA2	domain
PglZ	PF08665.12	gi|222481227|ref|YP_002567463.1|	-	0.022	14.9	0.4	3.5	7.7	0.1	2.2	1	1	1	2	2	2	0	PglZ	domain
Phosphodiest	PF01663.22	gi|222481227|ref|YP_002567463.1|	-	0.027	14.0	0.0	0.035	13.7	0.0	1.3	1	0	0	1	1	1	0	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
N6_N4_Mtase	PF01555.18	gi|222481228|ref|YP_002567464.1|	-	5.8e-17	62.2	0.1	2.3e-07	30.8	0.1	2.6	2	0	0	2	2	2	2	DNA	methylase
DUF1156	PF06634.12	gi|222481228|ref|YP_002567464.1|	-	2.6e-06	27.5	0.0	5.8e-06	26.3	0.0	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1156)
UPF0020	PF01170.18	gi|222481228|ref|YP_002567464.1|	-	1.4e-05	24.9	0.0	0.11	12.1	0.0	2.5	2	0	0	2	2	2	2	Putative	RNA	methylase	family	UPF0020
MethyltransfD12	PF02086.15	gi|222481228|ref|YP_002567464.1|	-	0.00036	20.3	1.3	0.0011	18.7	0.0	2.3	2	0	0	2	2	2	1	D12	class	N6	adenine-specific	DNA	methyltransferase
Cons_hypoth95	PF03602.15	gi|222481228|ref|YP_002567464.1|	-	0.0024	17.5	0.0	0.67	9.6	0.0	2.4	2	0	0	2	2	2	2	Conserved	hypothetical	protein	95
AAA_25	PF13481.6	gi|222481228|ref|YP_002567464.1|	-	0.023	14.3	0.3	0.049	13.2	0.3	1.5	1	0	0	1	1	1	0	AAA	domain
Cyclophil_like	PF04126.13	gi|222481228|ref|YP_002567464.1|	-	0.13	12.1	0.0	0.37	10.6	0.0	1.7	1	0	0	1	1	1	0	Cyclophilin-like
DZR	PF12773.7	gi|222481228|ref|YP_002567464.1|	-	0.16	12.0	10.9	6.6	6.8	0.1	3.3	2	1	0	2	2	2	0	Double	zinc	ribbon
zinc_ribbon_6	PF14599.6	gi|222481228|ref|YP_002567464.1|	-	0.57	10.2	10.3	19	5.3	0.6	3.8	2	1	1	3	3	3	0	Zinc-ribbon
Zn_Tnp_IS1595	PF12760.7	gi|222481228|ref|YP_002567464.1|	-	2	8.5	9.8	0.7	9.9	0.4	3.0	3	0	0	3	3	3	0	Transposase	zinc-ribbon	domain
zf-HIT	PF04438.16	gi|222481228|ref|YP_002567464.1|	-	4.3	7.3	5.5	1.3	9.0	1.6	2.2	2	0	0	2	2	2	0	HIT	zinc	finger
MethyltransfD12	PF02086.15	gi|222481230|ref|YP_002567466.1|	-	3.7e-29	102.2	0.3	5.4e-29	101.7	0.2	1.2	1	1	0	1	1	1	1	D12	class	N6	adenine-specific	DNA	methyltransferase
DDE_Tnp_1	PF01609.21	gi|222481232|ref|YP_002567468.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
AAA_5	PF07728.14	gi|222481233|ref|YP_002567469.1|	-	1.7e-14	54.0	0.0	2.9e-14	53.2	0.0	1.4	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA_16	PF13191.6	gi|222481233|ref|YP_002567469.1|	-	2.7e-05	24.6	0.0	0.00036	21.0	0.0	2.7	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_19	PF13245.6	gi|222481233|ref|YP_002567469.1|	-	0.00012	22.4	1.4	0.0036	17.6	0.6	3.0	2	1	0	2	2	2	1	AAA	domain
AAA_22	PF13401.6	gi|222481233|ref|YP_002567469.1|	-	0.00013	22.2	0.0	0.0004	20.7	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
Mg_chelatase	PF01078.21	gi|222481233|ref|YP_002567469.1|	-	0.00014	21.4	0.0	0.00024	20.5	0.0	1.3	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
AAA_7	PF12775.7	gi|222481233|ref|YP_002567469.1|	-	0.00037	20.1	0.0	0.00071	19.1	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	dynein	motor	region
UvrD-helicase	PF00580.21	gi|222481233|ref|YP_002567469.1|	-	0.00057	19.5	0.0	0.26	10.8	0.0	2.4	2	0	0	2	2	2	1	UvrD/REP	helicase	N-terminal	domain
AAA_18	PF13238.6	gi|222481233|ref|YP_002567469.1|	-	0.00058	20.4	0.0	0.0021	18.6	0.0	2.0	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|222481233|ref|YP_002567469.1|	-	0.00082	19.1	0.4	0.027	14.2	0.1	2.4	2	1	0	2	2	2	1	AAA	domain
AAA	PF00004.29	gi|222481233|ref|YP_002567469.1|	-	0.00083	19.8	0.1	0.0026	18.2	0.1	2.0	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
TIP49	PF06068.13	gi|222481233|ref|YP_002567469.1|	-	0.00095	18.5	0.0	0.0022	17.3	0.0	1.5	1	0	0	1	1	1	1	TIP49	P-loop	domain
NTPase_1	PF03266.15	gi|222481233|ref|YP_002567469.1|	-	0.0012	18.8	0.0	0.0023	17.9	0.0	1.4	1	0	0	1	1	1	1	NTPase
AAA_24	PF13479.6	gi|222481233|ref|YP_002567469.1|	-	0.0022	17.7	0.1	0.0042	16.8	0.1	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_3	PF07726.11	gi|222481233|ref|YP_002567469.1|	-	0.0042	16.9	0.0	3.2	7.6	0.0	3.2	3	1	0	3	3	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_25	PF13481.6	gi|222481233|ref|YP_002567469.1|	-	0.0074	15.9	0.0	0.019	14.5	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_28	PF13521.6	gi|222481233|ref|YP_002567469.1|	-	0.0077	16.5	0.0	0.019	15.2	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
RNA_helicase	PF00910.22	gi|222481233|ref|YP_002567469.1|	-	0.0084	16.5	0.0	0.028	14.8	0.0	1.9	1	0	0	1	1	1	1	RNA	helicase
AAA_33	PF13671.6	gi|222481233|ref|YP_002567469.1|	-	0.0089	16.2	0.0	0.018	15.2	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
DnaB_C	PF03796.15	gi|222481233|ref|YP_002567469.1|	-	0.0093	15.3	0.0	0.018	14.4	0.0	1.4	1	0	0	1	1	1	1	DnaB-like	helicase	C	terminal	domain
IstB_IS21	PF01695.17	gi|222481233|ref|YP_002567469.1|	-	0.0094	15.7	0.0	0.028	14.1	0.0	1.8	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
T2SSE	PF00437.20	gi|222481233|ref|YP_002567469.1|	-	0.011	14.8	0.0	0.018	14.1	0.0	1.2	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
AAA_11	PF13086.6	gi|222481233|ref|YP_002567469.1|	-	0.014	15.1	0.0	0.061	13.1	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
Sigma54_activat	PF00158.26	gi|222481233|ref|YP_002567469.1|	-	0.02	14.6	0.0	0.046	13.4	0.0	1.5	1	0	0	1	1	1	0	Sigma-54	interaction	domain
ResIII	PF04851.15	gi|222481233|ref|YP_002567469.1|	-	0.049	13.6	0.0	0.11	12.5	0.0	1.5	1	0	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
NACHT	PF05729.12	gi|222481233|ref|YP_002567469.1|	-	0.063	13.2	0.0	0.13	12.2	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
RuvB_N	PF05496.12	gi|222481233|ref|YP_002567469.1|	-	0.067	12.9	0.0	0.18	11.5	0.0	1.7	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
KTI12	PF08433.10	gi|222481233|ref|YP_002567469.1|	-	0.067	12.6	0.0	0.37	10.2	0.0	2.0	2	0	0	2	2	2	0	Chromatin	associated	protein	KTI12
AAA_6	PF12774.7	gi|222481233|ref|YP_002567469.1|	-	0.12	11.3	0.0	0.25	10.3	0.0	1.4	1	0	0	1	1	1	0	Hydrolytic	ATP	binding	site	of	dynein	motor	region
ABC_tran	PF00005.27	gi|222481233|ref|YP_002567469.1|	-	0.14	12.7	0.0	0.36	11.3	0.0	1.8	1	0	0	1	1	1	0	ABC	transporter
P22_CoatProtein	PF11651.8	gi|222481233|ref|YP_002567469.1|	-	0.2	10.2	0.1	0.3	9.6	0.1	1.2	1	0	0	1	1	1	0	P22	coat	protein	-	gene	protein	5
PIF1	PF05970.14	gi|222481233|ref|YP_002567469.1|	-	0.2	10.8	0.0	1.1	8.4	0.0	1.9	2	0	0	2	2	2	0	PIF1-like	helicase
SHOCT	PF09851.9	gi|222481235|ref|YP_002567471.1|	-	0.023	14.4	0.2	0.084	12.6	0.2	2.1	1	0	0	1	1	1	0	Short	C-terminal	domain
CobT	PF06213.12	gi|222481235|ref|YP_002567471.1|	-	0.11	11.9	0.2	0.41	10.0	0.0	2.0	2	0	0	2	2	2	0	Cobalamin	biosynthesis	protein	CobT
DUF5638	PF18688.1	gi|222481235|ref|YP_002567471.1|	-	0.57	10.5	4.7	25	5.2	0.0	3.6	4	1	0	4	4	4	0	Family	of	unknown	function	(DUF5638)
zf-ACC	PF17848.1	gi|222481237|ref|YP_002567473.1|	-	0.00016	21.7	1.3	0.16	12.0	0.3	2.2	2	0	0	2	2	2	2	Acetyl-coA	carboxylase	zinc	finger	domain
Terminase_GpA	PF05876.12	gi|222481237|ref|YP_002567473.1|	-	0.0019	16.8	1.1	0.0019	16.8	1.1	1.0	1	0	0	1	1	1	1	Phage	terminase	large	subunit	(GpA)
zf-RING_4	PF14570.6	gi|222481237|ref|YP_002567473.1|	-	0.013	15.3	0.6	1.1	9.1	0.0	2.1	2	0	0	2	2	2	0	RING/Ubox	like	zinc-binding	domain
Zn-ribbon_8	PF09723.10	gi|222481237|ref|YP_002567473.1|	-	0.013	15.6	0.8	3	8.0	0.1	2.1	2	0	0	2	2	2	0	Zinc	ribbon	domain
Rubredoxin_2	PF18073.1	gi|222481237|ref|YP_002567473.1|	-	0.035	13.8	2.8	0.24	11.1	0.1	2.2	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
zf-C4_Topoisom	PF01396.19	gi|222481237|ref|YP_002567473.1|	-	0.14	11.9	2.2	1.1	9.1	0.1	2.1	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
UPF0547	PF10571.9	gi|222481237|ref|YP_002567473.1|	-	0.45	10.7	7.9	2.2	8.4	1.2	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
zf-H2C2_2	PF13465.6	gi|222481237|ref|YP_002567473.1|	-	0.97	10.0	3.4	3.5	8.2	0.1	2.4	2	1	0	2	2	2	0	Zinc-finger	double	domain
zinc_ribbon_15	PF17032.5	gi|222481238|ref|YP_002567474.1|	-	0.00029	21.5	0.9	0.00034	21.3	0.9	1.1	1	0	0	1	1	1	1	zinc-ribbon	family
HypA	PF01155.19	gi|222481238|ref|YP_002567474.1|	-	0.0011	18.9	2.0	0.0011	18.9	2.0	1.1	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn_Tnp_IS1595	PF12760.7	gi|222481238|ref|YP_002567474.1|	-	0.0014	18.6	2.1	0.66	10.0	0.1	2.1	2	0	0	2	2	2	2	Transposase	zinc-ribbon	domain
DZR	PF12773.7	gi|222481238|ref|YP_002567474.1|	-	0.0018	18.3	2.0	0.002	18.1	2.0	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
DUF1272	PF06906.11	gi|222481238|ref|YP_002567474.1|	-	0.0025	17.9	1.7	0.0027	17.8	1.7	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1272)
zf-ribbon_3	PF13248.6	gi|222481238|ref|YP_002567474.1|	-	0.003	16.9	4.4	0.0045	16.4	4.4	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
zf-P11	PF03854.14	gi|222481238|ref|YP_002567474.1|	-	0.0031	17.2	0.8	0.0034	17.0	0.8	1.2	1	0	0	1	1	1	1	P-11	zinc	finger
zinc_ribbon_2	PF13240.6	gi|222481238|ref|YP_002567474.1|	-	0.0058	16.3	8.9	0.0086	15.8	8.9	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
zf-BED	PF02892.15	gi|222481238|ref|YP_002567474.1|	-	0.01	15.8	0.6	0.011	15.7	0.1	1.4	1	1	0	1	1	1	0	BED	zinc	finger
zinc-ribbon_6	PF10005.9	gi|222481238|ref|YP_002567474.1|	-	0.043	14.5	2.5	0.052	14.2	2.5	1.1	1	0	0	1	1	1	0	zinc-ribbon	domain
DUF1258	PF06869.12	gi|222481238|ref|YP_002567474.1|	-	0.062	12.8	0.4	0.068	12.6	0.4	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1258)
Zn-ribbon_8	PF09723.10	gi|222481238|ref|YP_002567474.1|	-	0.11	12.6	9.2	0.3	11.2	9.1	1.7	1	1	0	1	1	1	0	Zinc	ribbon	domain
Rubredoxin_2	PF18073.1	gi|222481238|ref|YP_002567474.1|	-	0.25	11.1	6.1	0.67	9.7	6.1	1.7	1	1	0	1	1	1	0	Rubredoxin	metal	binding	domain
NRDD	PF13597.6	gi|222481238|ref|YP_002567474.1|	-	0.45	9.2	4.3	0.48	9.2	4.3	1.0	1	0	0	1	1	1	0	Anaerobic	ribonucleoside-triphosphate	reductase
zf-C2H2_4	PF13894.6	gi|222481238|ref|YP_002567474.1|	-	0.77	10.8	5.3	1.5	9.9	0.2	2.3	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zf-C2H2	PF00096.26	gi|222481238|ref|YP_002567474.1|	-	1	9.9	7.8	1.1	9.9	0.2	2.3	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
OrfB_Zn_ribbon	PF07282.11	gi|222481238|ref|YP_002567474.1|	-	1.2	9.2	5.9	9.3	6.3	0.2	1.9	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
PadR	PF03551.14	gi|222481239|ref|YP_002567475.1|	-	7.4e-17	61.1	0.9	8.9e-17	60.8	0.9	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
DUF1495	PF07381.11	gi|222481239|ref|YP_002567475.1|	-	0.00053	19.8	0.0	0.00081	19.2	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain	(DUF1495)
HTH_45	PF14947.6	gi|222481239|ref|YP_002567475.1|	-	0.0025	17.8	0.1	0.0033	17.4	0.1	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_27	PF13463.6	gi|222481239|ref|YP_002567475.1|	-	0.0037	17.7	0.1	0.0039	17.6	0.1	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
Replic_Relax	PF13814.6	gi|222481239|ref|YP_002567475.1|	-	0.049	13.7	0.1	0.056	13.5	0.1	1.1	1	0	0	1	1	1	0	Replication-relaxation
HTH_34	PF13601.6	gi|222481239|ref|YP_002567475.1|	-	0.063	13.5	0.0	0.082	13.1	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF4364	PF14277.6	gi|222481239|ref|YP_002567475.1|	-	0.086	12.6	0.1	0.099	12.4	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
Gb3_synth	PF04572.12	gi|222481242|ref|YP_002567478.1|	-	0.12	12.6	0.1	0.13	12.5	0.1	1.1	1	0	0	1	1	1	0	Alpha	1,4-glycosyltransferase	conserved	region
DDE_Tnp_1	PF01609.21	gi|222481243|ref|YP_002567479.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
OrfB_Zn_ribbon	PF07282.11	gi|222481244|ref|YP_002567480.1|	-	1.8e-18	66.2	2.0	4.2e-18	65.0	2.0	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|222481244|ref|YP_002567480.1|	-	6.1e-14	52.3	0.0	2.1e-13	50.5	0.0	1.8	1	1	0	1	1	1	1	Probable	transposase
Zn_Tnp_IS1595	PF12760.7	gi|222481244|ref|YP_002567480.1|	-	5.9e-05	23.0	0.1	0.00016	21.6	0.1	1.7	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|222481244|ref|YP_002567480.1|	-	0.002	17.6	4.0	0.002	17.6	4.0	1.9	2	0	0	2	2	2	1	TFIIB	zinc-binding
zf_Rg	PF17915.1	gi|222481244|ref|YP_002567480.1|	-	0.0041	16.5	1.0	0.0095	15.3	1.0	1.5	1	0	0	1	1	1	1	Reverse	gyrase	zinc	finger
C1_2	PF03107.16	gi|222481244|ref|YP_002567480.1|	-	0.015	15.6	1.0	0.033	14.5	1.0	1.5	1	0	0	1	1	1	0	C1	domain
zf-ACC	PF17848.1	gi|222481244|ref|YP_002567480.1|	-	0.019	15.0	2.7	0.046	13.8	2.7	1.7	1	0	0	1	1	1	0	Acetyl-coA	carboxylase	zinc	finger	domain
DZR	PF12773.7	gi|222481244|ref|YP_002567480.1|	-	0.11	12.6	2.2	0.28	11.2	2.2	1.8	1	0	0	1	1	1	0	Double	zinc	ribbon
Nudix_N_2	PF14803.6	gi|222481244|ref|YP_002567480.1|	-	1.4	8.9	4.4	2.1	8.3	1.3	2.6	2	1	0	2	2	2	0	Nudix	N-terminal
Y1_Tnp	PF01797.16	gi|222481246|ref|YP_002567482.1|	-	9.7e-36	122.5	0.1	1.1e-35	122.4	0.1	1.0	1	0	0	1	1	1	1	Transposase	IS200	like
DUF4965	PF16335.5	gi|222481246|ref|YP_002567482.1|	-	0.11	12.1	0.0	0.13	12.0	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4965)
DUF2610	PF11020.8	gi|222481246|ref|YP_002567482.1|	-	0.12	12.2	0.0	0.2	11.5	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF2610)
OrfB_Zn_ribbon	PF07282.11	gi|222481247|ref|YP_002567483.1|	-	3.9e-23	81.2	0.4	7.6e-23	80.2	0.4	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Cdc6_C	PF09079.11	gi|222481248|ref|YP_002567484.1|	-	2e-15	56.5	0.1	5.4e-15	55.1	0.1	1.8	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|222481248|ref|YP_002567484.1|	-	1.7e-09	38.0	0.0	4e-09	36.9	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|222481248|ref|YP_002567484.1|	-	1.1e-05	25.9	2.3	0.00025	21.4	0.1	3.1	2	2	1	3	3	3	1	AAA	ATPase	domain
NACHT	PF05729.12	gi|222481248|ref|YP_002567484.1|	-	1.5e-05	25.0	0.0	2.7e-05	24.1	0.0	1.4	1	0	0	1	1	1	1	NACHT	domain
AAA	PF00004.29	gi|222481248|ref|YP_002567484.1|	-	0.0014	19.0	0.0	0.0039	17.6	0.0	1.8	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Phage-MuB_C	PF09077.11	gi|222481248|ref|YP_002567484.1|	-	0.003	17.4	0.1	0.01	15.7	0.1	1.9	1	0	0	1	1	1	1	Mu	B	transposition	protein,	C	terminal
HalOD1	PF18545.1	gi|222481250|ref|YP_002567486.1|	-	4.4e-08	33.3	0.3	5.2e-08	33.0	0.3	1.2	1	0	0	1	1	1	1	Halobacterial	output	domain	1
Aldedh	PF00171.22	gi|222481252|ref|YP_002567488.1|	-	3.6e-145	484.0	0.0	4.6e-145	483.7	0.0	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
OrfB_Zn_ribbon	PF07282.11	gi|222481253|ref|YP_002567489.1|	-	3.1e-23	81.5	1.3	6.6e-23	80.4	1.3	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|222481253|ref|YP_002567489.1|	-	1.1e-09	38.5	0.0	2.1e-09	37.6	0.0	1.5	1	0	0	1	1	1	1	Probable	transposase
HypA	PF01155.19	gi|222481253|ref|YP_002567489.1|	-	0.0054	16.7	0.3	0.012	15.6	0.3	1.5	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DCAF15_WD40	PF14939.6	gi|222481253|ref|YP_002567489.1|	-	0.045	13.4	1.2	0.077	12.6	1.2	1.3	1	0	0	1	1	1	0	DDB1-and	CUL4-substrate	receptor	15,	WD	repeat
zf-piccolo	PF05715.13	gi|222481253|ref|YP_002567489.1|	-	0.056	13.6	0.7	0.11	12.6	0.7	1.5	1	0	0	1	1	1	0	Piccolo	Zn-finger
zinc_ribbon_2	PF13240.6	gi|222481253|ref|YP_002567489.1|	-	0.65	9.8	5.2	9.1	6.2	5.3	2.4	1	1	1	2	2	2	0	zinc-ribbon	domain
Rubredoxin_2	PF18073.1	gi|222481253|ref|YP_002567489.1|	-	1.1	9.0	4.3	7.9	6.3	0.4	2.3	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
zf-Mss51	PF13824.6	gi|222481253|ref|YP_002567489.1|	-	3.6	7.8	7.9	1.5	9.0	3.1	2.9	2	1	0	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
HalOD1	PF18545.1	gi|222481256|ref|YP_002567492.1|	-	3.4e-22	78.5	0.7	4.2e-22	78.2	0.7	1.1	1	0	0	1	1	1	1	Halobacterial	output	domain	1
BAT	PF15915.5	gi|222481257|ref|YP_002567493.1|	-	5.3e-21	75.1	1.3	1.1e-20	74.0	1.3	1.6	1	0	0	1	1	1	1	GAF	and	HTH_10	associated	domain
HTH_10	PF04967.12	gi|222481257|ref|YP_002567493.1|	-	1.2e-17	63.4	0.3	2.2e-16	59.4	0.1	2.6	3	0	0	3	3	3	1	HTH	DNA	binding	domain
PAS	PF00989.25	gi|222481257|ref|YP_002567493.1|	-	8.8e-13	48.2	0.0	1.9e-12	47.2	0.0	1.5	1	0	0	1	1	1	1	PAS	fold
PAS_4	PF08448.10	gi|222481257|ref|YP_002567493.1|	-	1.9e-10	41.0	0.1	4e-10	39.9	0.1	1.6	1	0	0	1	1	1	1	PAS	fold
PAS_9	PF13426.7	gi|222481257|ref|YP_002567493.1|	-	1.3e-07	31.8	0.0	2.4e-07	30.9	0.0	1.4	1	0	0	1	1	1	1	PAS	domain
HTH_20	PF12840.7	gi|222481257|ref|YP_002567493.1|	-	2.9e-07	30.4	0.2	0.0087	16.1	0.0	3.0	3	0	0	3	3	3	2	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|222481257|ref|YP_002567493.1|	-	2.3e-05	23.9	0.1	0.0052	16.3	0.0	2.6	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.12	gi|222481257|ref|YP_002567493.1|	-	2.9e-05	23.9	0.2	0.11	12.4	0.1	2.9	3	0	0	3	3	2	2	HTH	domain
HTH_29	PF13551.6	gi|222481257|ref|YP_002567493.1|	-	2.9e-05	24.0	0.0	0.011	15.7	0.0	2.6	2	0	0	2	2	2	1	Winged	helix-turn	helix
PAS_8	PF13188.7	gi|222481257|ref|YP_002567493.1|	-	4.6e-05	23.3	0.0	0.00021	21.2	0.0	2.1	2	0	0	2	2	2	1	PAS	domain
HTH_Crp_2	PF13545.6	gi|222481257|ref|YP_002567493.1|	-	7.2e-05	22.7	0.1	0.054	13.5	0.0	2.5	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
HTH_8	PF02954.19	gi|222481257|ref|YP_002567493.1|	-	0.0006	19.6	1.2	1.3	8.8	0.0	3.4	3	0	0	3	3	3	1	Bacterial	regulatory	protein,	Fis	family
MarR_2	PF12802.7	gi|222481257|ref|YP_002567493.1|	-	0.0015	18.4	0.2	0.36	10.8	0.0	2.6	2	0	0	2	2	2	1	MarR	family
HTH_17	PF12728.7	gi|222481257|ref|YP_002567493.1|	-	0.0029	17.8	0.1	0.85	9.9	0.0	2.6	2	0	0	2	2	2	1	Helix-turn-helix	domain
PAS_3	PF08447.12	gi|222481257|ref|YP_002567493.1|	-	0.0031	17.8	0.1	0.013	15.8	0.1	2.1	2	0	0	2	2	2	1	PAS	fold
TrmB	PF01978.19	gi|222481257|ref|YP_002567493.1|	-	0.0038	17.1	0.1	0.12	12.3	0.1	2.5	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_28	PF13518.6	gi|222481257|ref|YP_002567493.1|	-	0.0041	17.2	0.0	1.8	8.7	0.0	2.8	3	0	0	3	3	2	1	Helix-turn-helix	domain
HTH_23	PF13384.6	gi|222481257|ref|YP_002567493.1|	-	0.011	15.5	0.0	4	7.3	0.0	2.7	3	0	0	3	3	2	0	Homeodomain-like	domain
HTH_22	PF13309.6	gi|222481257|ref|YP_002567493.1|	-	0.017	15.2	0.0	11	6.2	0.0	2.7	2	0	0	2	2	2	0	HTH	domain
TetR_N	PF00440.23	gi|222481257|ref|YP_002567493.1|	-	0.04	13.7	0.0	12	5.8	0.0	2.5	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	tetR	family
Sigma70_ECF	PF07638.11	gi|222481257|ref|YP_002567493.1|	-	0.043	13.7	0.0	4	7.3	0.0	2.3	2	0	0	2	2	2	0	ECF	sigma	factor
HTH_30	PF13556.6	gi|222481257|ref|YP_002567493.1|	-	0.048	13.5	0.4	9.5	6.1	0.0	2.6	2	0	0	2	2	2	0	PucR	C-terminal	helix-turn-helix	domain
Sigma70_r4_2	PF08281.12	gi|222481257|ref|YP_002567493.1|	-	0.06	13.0	0.1	2.3	7.9	0.0	2.9	3	0	0	3	3	3	0	Sigma-70,	region	4
HTH_7	PF02796.15	gi|222481257|ref|YP_002567493.1|	-	0.075	13.1	0.0	7.1	6.8	0.0	2.8	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	resolvase
GYD	PF08734.11	gi|222481257|ref|YP_002567493.1|	-	0.13	12.2	0.0	0.41	10.6	0.0	1.8	2	0	0	2	2	1	0	GYD	domain
HTH_1	PF00126.27	gi|222481257|ref|YP_002567493.1|	-	0.14	12.1	0.1	0.4	10.7	0.1	1.8	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
FKBP_C	PF00254.28	gi|222481258|ref|YP_002567494.1|	-	1.3e-21	76.7	0.1	1.9e-21	76.2	0.1	1.3	1	0	0	1	1	1	1	FKBP-type	peptidyl-prolyl	cis-trans	isomerase
DUF726	PF05277.12	gi|222481259|ref|YP_002567495.1|	-	1.1e-13	50.8	0.0	1.7e-13	50.2	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF726)
DUF900	PF05990.12	gi|222481259|ref|YP_002567495.1|	-	1.4e-08	34.6	0.0	2.3e-08	33.9	0.0	1.2	1	0	0	1	1	1	1	Alpha/beta	hydrolase	of	unknown	function	(DUF900)
DUF3089	PF11288.8	gi|222481259|ref|YP_002567495.1|	-	0.084	12.4	0.0	0.12	11.9	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3089)
Abhydrolase_2	PF02230.16	gi|222481259|ref|YP_002567495.1|	-	0.22	11.3	0.0	0.83	9.4	0.0	1.8	2	0	0	2	2	2	0	Phospholipase/Carboxylesterase
AAA_31	PF13614.6	gi|222481260|ref|YP_002567496.1|	-	4.9e-36	124.3	0.2	1.1e-35	123.1	0.1	1.6	1	1	1	2	2	2	1	AAA	domain
CbiA	PF01656.23	gi|222481260|ref|YP_002567496.1|	-	1.2e-14	54.5	0.0	2.5e-14	53.4	0.0	1.6	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
MipZ	PF09140.11	gi|222481260|ref|YP_002567496.1|	-	4e-10	39.4	4.5	1.7e-05	24.3	0.9	2.2	2	0	0	2	2	2	2	ATPase	MipZ
CBP_BcsQ	PF06564.12	gi|222481260|ref|YP_002567496.1|	-	7.1e-08	32.2	0.0	2.1e-07	30.6	0.0	1.6	1	1	1	2	2	2	1	Cellulose	biosynthesis	protein	BcsQ
ParA	PF10609.9	gi|222481260|ref|YP_002567496.1|	-	2.5e-07	30.4	0.3	6.7e-07	29.0	0.3	1.7	1	1	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
VirC1	PF07015.11	gi|222481260|ref|YP_002567496.1|	-	4.7e-06	26.1	0.7	0.00019	20.8	0.1	2.3	2	0	0	2	2	2	1	VirC1	protein
ArsA_ATPase	PF02374.15	gi|222481260|ref|YP_002567496.1|	-	0.0012	18.1	1.9	0.015	14.5	1.9	2.3	1	1	0	1	1	1	1	Anion-transporting	ATPase
Fer4_NifH	PF00142.18	gi|222481260|ref|YP_002567496.1|	-	0.032	13.7	0.1	1.6	8.1	0.0	2.3	2	0	0	2	2	2	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
MarR_2	PF12802.7	gi|222481262|ref|YP_002567498.1|	-	1.3e-05	25.0	0.1	2e-05	24.4	0.1	1.2	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|222481262|ref|YP_002567498.1|	-	0.00014	21.6	0.0	0.00022	21.0	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HrcA_DNA-bdg	PF03444.15	gi|222481262|ref|YP_002567498.1|	-	0.00048	19.7	0.0	0.00076	19.1	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
HTH_Crp_2	PF13545.6	gi|222481262|ref|YP_002567498.1|	-	0.0014	18.6	0.0	0.0021	18.0	0.0	1.3	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
Rrf2	PF02082.20	gi|222481262|ref|YP_002567498.1|	-	0.013	15.9	0.0	0.017	15.4	0.0	1.2	1	0	0	1	1	1	0	Transcriptional	regulator
MarR	PF01047.22	gi|222481262|ref|YP_002567498.1|	-	0.019	14.9	0.0	0.031	14.2	0.0	1.3	1	0	0	1	1	1	0	MarR	family
GntR	PF00392.21	gi|222481262|ref|YP_002567498.1|	-	0.02	14.5	0.5	0.05	13.3	0.1	1.8	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
HTH_24	PF13412.6	gi|222481262|ref|YP_002567498.1|	-	0.029	13.9	0.0	0.047	13.3	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
PaaX	PF07848.12	gi|222481262|ref|YP_002567498.1|	-	0.052	13.8	0.0	0.082	13.1	0.0	1.3	1	0	0	1	1	1	0	PaaX-like	protein
HTH_5	PF01022.20	gi|222481262|ref|YP_002567498.1|	-	0.056	13.3	0.0	0.077	12.9	0.0	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Sigma70_r4_2	PF08281.12	gi|222481262|ref|YP_002567498.1|	-	0.063	13.0	0.0	0.11	12.2	0.0	1.4	1	0	0	1	1	1	0	Sigma-70,	region	4
Phage_rep_org_N	PF09681.10	gi|222481262|ref|YP_002567498.1|	-	0.086	12.8	0.0	0.11	12.4	0.0	1.2	1	0	0	1	1	1	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
HTH_20	PF12840.7	gi|222481262|ref|YP_002567498.1|	-	0.11	12.6	0.0	0.15	12.1	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_27	PF13463.6	gi|222481262|ref|YP_002567498.1|	-	0.12	12.8	0.0	0.18	12.3	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Fe_dep_repress	PF01325.19	gi|222481262|ref|YP_002567498.1|	-	0.15	12.3	0.0	0.26	11.5	0.0	1.4	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
PemK_toxin	PF02452.17	gi|222481263|ref|YP_002567499.1|	-	0.0035	17.7	0.0	0.0045	17.4	0.0	1.2	1	0	0	1	1	1	1	PemK-like,	MazF-like	toxin	of	type	II	toxin-antitoxin	system
Abhydrolase_1	PF00561.20	gi|222481264|ref|YP_002567500.1|	-	0.0011	18.7	0.1	0.061	13.0	0.0	2.3	2	0	0	2	2	2	2	alpha/beta	hydrolase	fold
Abhydrolase_6	PF12697.7	gi|222481264|ref|YP_002567500.1|	-	0.08	13.5	15.0	0.53	10.8	15.1	2.0	1	1	1	2	2	2	0	Alpha/beta	hydrolase	family
HTH_5	PF01022.20	gi|222481265|ref|YP_002567501.1|	-	3.8e-13	49.1	0.1	1.8e-12	46.9	0.0	1.8	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|222481265|ref|YP_002567501.1|	-	4.6e-09	36.2	0.0	9.1e-09	35.3	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|222481265|ref|YP_002567501.1|	-	3.7e-05	23.2	0.2	9.4e-05	21.9	0.2	1.7	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_45	PF14947.6	gi|222481265|ref|YP_002567501.1|	-	5.4e-05	23.1	0.2	7.2e-05	22.7	0.2	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
TrmB	PF01978.19	gi|222481265|ref|YP_002567501.1|	-	0.0031	17.4	0.0	0.012	15.4	0.0	1.8	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
DprA_WH	PF17782.1	gi|222481265|ref|YP_002567501.1|	-	0.0075	16.4	0.0	0.013	15.6	0.0	1.4	2	0	0	2	2	2	1	DprA	winged	helix	domain
HTH_IclR	PF09339.10	gi|222481265|ref|YP_002567501.1|	-	0.029	14.2	0.1	0.074	12.9	0.0	1.6	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
DUF4364	PF14277.6	gi|222481265|ref|YP_002567501.1|	-	0.031	14.0	0.2	0.037	13.8	0.2	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
HTH_41	PF14502.6	gi|222481265|ref|YP_002567501.1|	-	0.051	13.3	0.0	0.093	12.4	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
Penicillinase_R	PF03965.16	gi|222481265|ref|YP_002567501.1|	-	0.058	13.7	0.0	0.064	13.6	0.0	1.2	1	0	0	1	1	1	0	Penicillinase	repressor
HxlR	PF01638.17	gi|222481265|ref|YP_002567501.1|	-	0.1	12.5	0.0	0.12	12.3	0.0	1.2	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
Cyd_oper_YbgE	PF09600.10	gi|222481266|ref|YP_002567502.1|	-	0.0059	16.9	1.4	0.0059	16.9	1.4	1.7	2	0	0	2	2	2	1	Cyd	operon	protein	YbgE	(Cyd_oper_YbgE)
FtsX	PF02687.21	gi|222481266|ref|YP_002567502.1|	-	2.1	8.9	9.2	1.6	9.3	1.6	2.2	2	0	0	2	2	2	0	FtsX-like	permease	family
Fimbrial_K88	PF02432.15	gi|222481267|ref|YP_002567503.1|	-	0.023	14.7	0.0	0.031	14.3	0.0	1.3	1	1	0	1	1	1	0	Fimbrial,	major	and	minor	subunit
OrfB_Zn_ribbon	PF07282.11	gi|222481268|ref|YP_002567504.1|	-	2.9e-20	72.0	0.6	7.3e-20	70.7	0.6	1.7	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|222481268|ref|YP_002567504.1|	-	1.4e-07	31.8	0.0	8.3e-07	29.2	0.0	2.2	2	0	0	2	2	2	1	Probable	transposase
IBR	PF01485.21	gi|222481268|ref|YP_002567504.1|	-	0.012	15.8	1.4	0.012	15.8	1.4	2.3	2	0	0	2	2	2	0	IBR	domain,	a	half	RING-finger	domain
Phage_int_SAM_5	PF13102.6	gi|222481271|ref|YP_002567507.1|	-	3.9e-06	27.1	0.0	1.3e-05	25.4	0.0	1.7	2	0	0	2	2	2	1	Phage	integrase	SAM-like	domain
Phage_int_SAM_1	PF02899.17	gi|222481271|ref|YP_002567507.1|	-	0.0055	17.0	0.1	0.038	14.3	0.1	2.5	3	0	0	3	3	3	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_integrase	PF00589.22	gi|222481271|ref|YP_002567507.1|	-	0.045	13.5	0.0	0.52	10.1	0.0	2.3	1	1	0	1	1	1	0	Phage	integrase	family
Phage_int_SAM_4	PF13495.6	gi|222481271|ref|YP_002567507.1|	-	0.15	12.5	0.0	0.33	11.5	0.0	1.6	1	0	0	1	1	1	0	Phage	integrase,	N-terminal	SAM-like	domain
OrfB_Zn_ribbon	PF07282.11	gi|222481273|ref|YP_002567509.1|	-	5.2e-21	74.3	0.2	1.3e-20	73.1	0.2	1.7	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|222481273|ref|YP_002567509.1|	-	9.4e-20	71.0	1.2	1.2e-18	67.4	0.0	2.4	2	1	0	2	2	2	1	Probable	transposase
HTH_OrfB_IS605	PF12323.8	gi|222481273|ref|YP_002567509.1|	-	1.6e-08	33.9	0.3	3.4e-08	32.8	0.3	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
APG6_N	PF17675.1	gi|222481273|ref|YP_002567509.1|	-	0.0028	18.2	0.8	3	8.4	0.1	2.2	2	0	0	2	2	2	2	Apg6	coiled-coil	region
PP1c_bdg	PF10488.9	gi|222481273|ref|YP_002567509.1|	-	0.02	14.4	0.1	0.032	13.7	0.1	1.2	1	0	0	1	1	1	0	Phosphatase-1	catalytic	subunit	binding	region
4HB_MCP_1	PF12729.7	gi|222481273|ref|YP_002567509.1|	-	0.073	12.6	0.0	0.11	12.0	0.0	1.2	1	0	0	1	1	1	0	Four	helix	bundle	sensory	module	for	signal	transduction
SOG2	PF10428.9	gi|222481273|ref|YP_002567509.1|	-	0.17	11.1	0.0	0.26	10.4	0.0	1.2	1	0	0	1	1	1	0	RAM	signalling	pathway	protein
Zn-ribbon_8	PF09723.10	gi|222481273|ref|YP_002567509.1|	-	2.1	8.5	6.9	5.5	7.2	1.4	2.4	1	1	1	2	2	2	0	Zinc	ribbon	domain
DDE_Tnp_1	PF01609.21	gi|222481274|ref|YP_002567510.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
Lactamase_B_2	PF12706.7	gi|222481275|ref|YP_002567511.1|	-	2.1e-08	33.9	2.4	2.1e-08	33.9	2.4	2.2	3	0	0	3	3	3	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|222481275|ref|YP_002567511.1|	-	1.4e-06	28.5	8.7	4.6e-06	26.8	8.7	1.9	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
SAPS	PF04499.15	gi|222481275|ref|YP_002567511.1|	-	0.75	8.5	5.1	0.99	8.1	5.1	1.3	1	0	0	1	1	1	0	SIT4	phosphatase-associated	protein
SDA1	PF05285.12	gi|222481275|ref|YP_002567511.1|	-	5.8	6.2	19.0	8.4	5.7	19.0	1.1	1	0	0	1	1	1	0	SDA1
VWA_2	PF13519.6	gi|222481276|ref|YP_002567512.1|	-	4.9e-07	30.4	0.1	1.1e-06	29.2	0.1	1.5	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA	PF00092.28	gi|222481276|ref|YP_002567512.1|	-	2.1e-06	28.1	0.3	3.1e-06	27.5	0.3	1.4	1	1	0	1	1	1	1	von	Willebrand	factor	type	A	domain
RNA_POL_M_15KD	PF02150.16	gi|222481277|ref|YP_002567513.1|	-	0.13	12.2	1.5	0.27	11.2	1.5	1.5	1	0	0	1	1	1	0	RNA	polymerases	M/15	Kd	subunit
DDE_Tnp_1	PF01609.21	gi|222481278|ref|YP_002567514.1|	-	1.6e-15	57.4	5.5	6.3e-15	55.4	5.5	1.9	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|222481278|ref|YP_002567514.1|	-	0.00046	20.1	0.6	0.0012	18.8	0.0	2.0	2	0	0	2	2	2	1	Transposase	domain	(DUF772)
DDE_Tnp_1_2	PF13586.6	gi|222481278|ref|YP_002567514.1|	-	0.0075	16.6	1.3	0.013	15.8	0.2	1.9	2	1	0	2	2	2	1	Transposase	DDE	domain
DDE_Tnp_1_6	PF13751.6	gi|222481278|ref|YP_002567514.1|	-	0.021	15.1	0.5	0.06	13.6	0.3	1.9	2	0	0	2	2	2	0	Transposase	DDE	domain
DDE_Tnp_1	PF01609.21	gi|222481279|ref|YP_002567515.1|	-	8.2e-23	81.2	0.0	1.2e-22	80.7	0.0	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_6	PF13751.6	gi|222481279|ref|YP_002567515.1|	-	0.0015	18.7	0.0	0.0027	17.9	0.0	1.3	1	0	0	1	1	1	1	Transposase	DDE	domain
Phage_integrase	PF00589.22	gi|222481280|ref|YP_002567516.1|	-	0.043	13.6	0.0	0.56	10.0	0.0	2.3	1	1	0	1	1	1	0	Phage	integrase	family
ParE_toxin	PF05016.15	gi|222481282|ref|YP_002567518.1|	-	0.14	12.8	0.0	0.17	12.5	0.0	1.1	1	0	0	1	1	1	0	ParE	toxin	of	type	II	toxin-antitoxin	system,	parDE
PQQ_2	PF13360.6	gi|222481283|ref|YP_002567519.1|	-	2.4e-38	132.1	29.0	9.9e-19	67.9	6.8	2.9	1	1	2	3	3	3	3	PQQ-like	domain
PQQ	PF01011.21	gi|222481283|ref|YP_002567519.1|	-	2e-21	74.8	8.4	2.6e-06	27.1	0.1	7.1	7	0	0	7	7	7	5	PQQ	enzyme	repeat
PQQ_3	PF13570.6	gi|222481283|ref|YP_002567519.1|	-	1.6e-16	60.2	27.1	0.0059	17.1	0.4	8.4	7	1	1	8	8	8	8	PQQ-like	domain
PQQ_3	PF13570.6	gi|222481285|ref|YP_002567521.1|	-	1.3e-40	136.9	38.0	1.6e-09	38.0	0.3	8.3	8	0	0	8	8	8	8	PQQ-like	domain
PQQ_2	PF13360.6	gi|222481285|ref|YP_002567521.1|	-	1.4e-39	136.1	24.0	2e-18	66.9	2.5	3.2	1	1	2	3	3	3	3	PQQ-like	domain
PQQ	PF01011.21	gi|222481285|ref|YP_002567521.1|	-	1.1e-16	59.8	17.4	0.011	15.7	0.1	7.9	8	0	0	8	8	8	6	PQQ	enzyme	repeat
DUF4905	PF16248.5	gi|222481285|ref|YP_002567521.1|	-	0.015	15.2	0.0	0.099	12.5	0.0	2.4	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4905)
TBP	PF00352.21	gi|222481286|ref|YP_002567522.1|	-	7e-55	182.9	0.0	1.7e-26	91.9	0.0	2.0	2	0	0	2	2	2	2	Transcription	factor	TFIID	(or	TATA-binding	protein,	TBP)
DUF3378	PF11858.8	gi|222481286|ref|YP_002567522.1|	-	5.8e-05	23.1	0.0	0.0045	17.1	0.0	2.2	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF3378)
DUF218	PF02698.17	gi|222481286|ref|YP_002567522.1|	-	0.023	14.7	0.0	0.17	11.9	0.0	1.9	1	1	1	2	2	2	0	DUF218	domain
SprT-like	PF10263.9	gi|222481287|ref|YP_002567523.1|	-	0.012	15.5	0.2	0.061	13.2	0.1	2.0	2	0	0	2	2	2	0	SprT-like	family
Phage_min_cap2	PF06152.11	gi|222481287|ref|YP_002567523.1|	-	0.018	14.0	0.1	0.038	12.9	0.0	1.5	2	0	0	2	2	2	0	Phage	minor	capsid	protein	2
TetR_C_15	PF17918.1	gi|222481287|ref|YP_002567523.1|	-	0.019	15.7	1.0	0.94	10.3	0.2	2.4	2	0	0	2	2	2	0	Tetracyclin	repressor-like,	C-terminal	domain
Peptidase_M78	PF06114.13	gi|222481287|ref|YP_002567523.1|	-	0.022	14.7	0.1	0.041	13.8	0.1	1.5	1	0	0	1	1	1	0	IrrE	N-terminal-like	domain
DDE_Tnp_1	PF01609.21	gi|222481290|ref|YP_002567526.1|	-	8.2e-23	81.2	0.0	1.2e-22	80.7	0.0	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_6	PF13751.6	gi|222481290|ref|YP_002567526.1|	-	0.0015	18.7	0.0	0.0027	17.9	0.0	1.3	1	0	0	1	1	1	1	Transposase	DDE	domain
TFIIB	PF00382.19	gi|222481293|ref|YP_002567529.1|	-	2.7e-27	94.6	4.5	2.2e-14	53.2	0.5	2.5	3	0	0	3	3	3	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|222481293|ref|YP_002567529.1|	-	2e-08	33.6	1.0	4.2e-08	32.6	1.0	1.6	1	0	0	1	1	1	1	TFIIB	zinc-binding
Cyclin_C	PF02984.19	gi|222481293|ref|YP_002567529.1|	-	5.1e-06	26.6	0.0	0.00019	21.5	0.0	2.2	1	1	1	2	2	2	1	Cyclin,	C-terminal	domain
RB_B	PF01857.20	gi|222481293|ref|YP_002567529.1|	-	0.0071	16.4	0.0	0.014	15.4	0.0	1.4	1	0	0	1	1	1	1	Retinoblastoma-associated	protein	B	domain
HTH_28	PF13518.6	gi|222481293|ref|YP_002567529.1|	-	0.0079	16.3	0.3	5.7	7.1	0.0	3.6	4	0	0	4	4	4	1	Helix-turn-helix	domain
DZR	PF12773.7	gi|222481293|ref|YP_002567529.1|	-	0.035	14.1	1.9	0.062	13.3	0.6	1.9	2	0	0	2	2	2	0	Double	zinc	ribbon
C1_1	PF00130.22	gi|222481293|ref|YP_002567529.1|	-	0.12	12.3	0.1	0.12	12.3	0.1	1.7	2	0	0	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
DnaJ_CXXCXGXG	PF00684.19	gi|222481293|ref|YP_002567529.1|	-	0.15	12.5	3.0	1.2	9.5	1.3	2.6	2	0	0	2	2	2	0	DnaJ	central	domain
zf-dskA_traR	PF01258.17	gi|222481293|ref|YP_002567529.1|	-	0.2	11.6	4.2	0.53	10.3	0.4	2.5	2	0	0	2	2	2	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
OrfB_Zn_ribbon	PF07282.11	gi|222481293|ref|YP_002567529.1|	-	0.37	10.7	3.2	0.27	11.2	0.6	2.1	3	0	0	3	3	3	0	Putative	transposase	DNA-binding	domain
YhfH	PF14149.6	gi|222481293|ref|YP_002567529.1|	-	0.73	9.9	3.8	12	6.0	0.5	2.6	2	0	0	2	2	2	0	YhfH-like	protein
SWIM	PF04434.17	gi|222481294|ref|YP_002567530.1|	-	1.6e-06	27.6	1.6	5.9e-05	22.6	0.0	2.3	2	0	0	2	2	2	2	SWIM	zinc	finger
PDDEXK_4	PF14281.6	gi|222481296|ref|YP_002567532.1|	-	5.4e-33	114.6	0.0	1e-32	113.8	0.0	1.5	1	0	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
HTH_24	PF13412.6	gi|222481298|ref|YP_002567534.1|	-	0.0033	17.0	0.0	0.0064	16.0	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TBPIP	PF07106.13	gi|222481298|ref|YP_002567534.1|	-	0.1	12.5	0.0	0.15	12.0	0.0	1.3	1	0	0	1	1	1	0	TBPIP/Hop2	winged	helix	domain
DUF3094	PF11293.8	gi|222481299|ref|YP_002567535.1|	-	0.13	12.0	0.0	0.13	12.0	0.0	3.4	5	0	0	5	5	5	0	Protein	of	unknown	function	(DUF3094)
DUF5373	PF17343.2	gi|222481300|ref|YP_002567536.1|	-	1.5	8.6	9.9	0.17	11.7	2.7	2.1	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5373)
GTA_TIM	PF13547.6	gi|222481301|ref|YP_002567537.1|	-	0.046	13.0	0.0	0.053	12.8	0.0	1.1	1	0	0	1	1	1	0	GTA	TIM-barrel-like	domain
DUF2680	PF10925.8	gi|222481301|ref|YP_002567537.1|	-	0.12	12.4	0.0	0.19	11.7	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2680)
DUF3658	PF12395.8	gi|222481302|ref|YP_002567538.1|	-	0.015	15.2	0.1	0.039	13.8	0.1	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function
YlqD	PF11068.8	gi|222481302|ref|YP_002567538.1|	-	0.1	13.0	1.3	0.16	12.4	0.0	1.9	2	0	0	2	2	2	0	YlqD	protein
DDE_Tnp_1	PF01609.21	gi|222481307|ref|YP_002567543.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
MC1	PF05854.11	gi|222481308|ref|YP_002567544.1|	-	0.8	10.0	0.1	0.8	10.0	0.1	2.4	1	1	1	3	3	3	0	Non-histone	chromosomal	protein	MC1
Helicase_C	PF00271.31	gi|222481309|ref|YP_002567545.1|	-	6.6e-16	58.6	0.0	1.3e-15	57.6	0.0	1.5	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
PLDc_2	PF13091.6	gi|222481309|ref|YP_002567545.1|	-	6.7e-15	55.1	0.0	1.8e-14	53.8	0.0	1.7	1	0	0	1	1	1	1	PLD-like	domain
SNF2_N	PF00176.23	gi|222481309|ref|YP_002567545.1|	-	1.9e-10	40.0	0.1	4.5e-09	35.5	0.0	2.2	1	1	1	2	2	2	1	SNF2	family	N-terminal	domain
ResIII	PF04851.15	gi|222481309|ref|YP_002567545.1|	-	1.6e-07	31.5	0.0	0.0024	17.9	0.0	2.5	2	0	0	2	2	2	2	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.29	gi|222481309|ref|YP_002567545.1|	-	6.7e-06	26.0	0.1	0.057	13.2	0.0	2.9	3	0	0	3	3	3	2	DEAD/DEAH	box	helicase
AAA_22	PF13401.6	gi|222481309|ref|YP_002567545.1|	-	0.0026	18.0	0.1	0.018	15.3	0.0	2.5	2	1	0	2	2	2	1	AAA	domain
Flavi_DEAD	PF07652.14	gi|222481309|ref|YP_002567545.1|	-	0.041	13.8	0.1	6	6.8	0.0	3.0	2	1	0	2	2	2	0	Flavivirus	DEAD	domain
AAA_34	PF13872.6	gi|222481309|ref|YP_002567545.1|	-	0.12	11.2	0.0	0.42	9.5	0.0	1.8	2	0	0	2	2	2	0	P-loop	containing	NTP	hydrolase	pore-1
RepB	PF07506.11	gi|222481309|ref|YP_002567545.1|	-	0.19	11.8	0.7	0.4	10.8	0.1	1.8	2	0	0	2	2	2	0	RepB	plasmid	partitioning	protein
ABATE	PF07336.11	gi|222481309|ref|YP_002567545.1|	-	3.3	8.4	10.0	1.4	9.6	4.1	3.4	4	0	0	4	4	4	0	Putative	stress-induced	transcription	regulator
Eco57I	PF07669.11	gi|222481310|ref|YP_002567546.1|	-	0.0014	19.1	0.0	0.87	10.1	0.0	2.4	2	0	0	2	2	2	2	Eco57I	restriction-modification	methylase
N6_Mtase	PF02384.16	gi|222481310|ref|YP_002567546.1|	-	0.0017	17.7	0.0	2.9	7.1	0.0	3.8	4	1	0	4	4	4	2	N-6	DNA	Methylase
DDE_Tnp_1	PF01609.21	gi|222481311|ref|YP_002567547.1|	-	1e-06	28.6	0.1	2e-06	27.6	0.1	1.5	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_7	PF13843.6	gi|222481312|ref|YP_002567548.1|	-	3.3e-07	29.9	0.0	4.5e-07	29.5	0.0	1.1	1	0	0	1	1	1	1	Transposase	IS4
DDE_Tnp_1	PF01609.21	gi|222481312|ref|YP_002567548.1|	-	6.7e-07	29.2	0.1	9.8e-07	28.6	0.1	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
SBF	PF01758.16	gi|222481313|ref|YP_002567549.1|	-	7.8e-49	166.0	11.6	7.8e-49	166.0	11.6	1.9	2	1	0	2	2	2	1	Sodium	Bile	acid	symporter	family
HTH_20	PF12840.7	gi|222481314|ref|YP_002567550.1|	-	1.2e-10	41.2	2.4	1.8e-10	40.7	0.6	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|222481314|ref|YP_002567550.1|	-	2.2e-08	33.8	0.4	4.3e-08	32.9	0.3	1.6	1	1	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_27	PF13463.6	gi|222481314|ref|YP_002567550.1|	-	0.00052	20.5	0.0	0.00086	19.7	0.0	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
DUF4423	PF14394.6	gi|222481314|ref|YP_002567550.1|	-	0.00077	19.2	0.0	0.0011	18.7	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4423)
HTH_34	PF13601.6	gi|222481314|ref|YP_002567550.1|	-	0.0012	18.9	0.0	0.0024	18.0	0.0	1.5	1	1	0	1	1	1	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.19	gi|222481314|ref|YP_002567550.1|	-	0.0016	18.3	0.0	0.0027	17.5	0.0	1.5	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|222481314|ref|YP_002567550.1|	-	0.0082	16.0	0.1	0.019	14.8	0.1	1.7	1	1	0	1	1	1	1	MarR	family
PaaX	PF07848.12	gi|222481314|ref|YP_002567550.1|	-	0.037	14.2	0.0	0.067	13.4	0.0	1.4	1	0	0	1	1	1	0	PaaX-like	protein
ArsD	PF06953.11	gi|222481315|ref|YP_002567551.1|	-	1.5e-28	99.6	0.1	1.6e-28	99.5	0.1	1.0	1	0	0	1	1	1	1	Arsenical	resistance	operon	trans-acting	repressor	ArsD
Nup54_C	PF18437.1	gi|222481315|ref|YP_002567551.1|	-	0.029	14.3	0.6	0.051	13.5	0.6	1.4	1	0	0	1	1	1	0	Nup54	C-terminal	interacting	domain
DUF1462	PF07315.11	gi|222481315|ref|YP_002567551.1|	-	0.054	13.8	0.1	0.064	13.5	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1462)
PqqD	PF05402.12	gi|222481315|ref|YP_002567551.1|	-	0.061	13.6	1.2	0.16	12.3	0.7	1.9	1	1	1	2	2	2	0	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
dDENN	PF03455.19	gi|222481315|ref|YP_002567551.1|	-	0.071	13.1	0.0	0.68	10.0	0.0	2.1	2	0	0	2	2	2	0	dDENN	domain
Pox_A6	PF04924.12	gi|222481315|ref|YP_002567551.1|	-	0.092	11.7	0.4	0.11	11.4	0.4	1.0	1	0	0	1	1	1	0	Poxvirus	A6	protein
ArsA_ATPase	PF02374.15	gi|222481316|ref|YP_002567552.1|	-	6.7e-162	537.8	0.0	4.1e-88	295.5	0.0	4.0	2	2	1	3	3	3	3	Anion-transporting	ATPase
CbiA	PF01656.23	gi|222481316|ref|YP_002567552.1|	-	1.5e-22	80.0	0.1	1.6e-09	37.9	0.0	3.5	2	2	0	2	2	2	2	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.6	gi|222481316|ref|YP_002567552.1|	-	4.3e-22	78.9	0.0	5.9e-10	39.4	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
ParA	PF10609.9	gi|222481316|ref|YP_002567552.1|	-	8.2e-14	51.6	0.6	2e-05	24.2	0.1	3.6	3	1	1	4	4	4	2	NUBPL	iron-transfer	P-loop	NTPase
Fer4_NifH	PF00142.18	gi|222481316|ref|YP_002567552.1|	-	2.1e-08	33.9	0.0	0.005	16.3	0.0	2.4	2	0	0	2	2	2	2	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
AAA_16	PF13191.6	gi|222481316|ref|YP_002567552.1|	-	4.1e-08	33.8	0.0	0.0026	18.1	0.0	2.4	2	0	0	2	2	2	2	AAA	ATPase	domain
SRP54	PF00448.22	gi|222481316|ref|YP_002567552.1|	-	4.2e-08	33.1	0.6	0.39	10.3	0.0	4.3	4	0	0	4	4	4	2	SRP54-type	protein,	GTPase	domain
CBP_BcsQ	PF06564.12	gi|222481316|ref|YP_002567552.1|	-	9.6e-07	28.5	0.0	0.00054	19.5	0.0	2.6	2	1	0	2	2	2	1	Cellulose	biosynthesis	protein	BcsQ
NB-ARC	PF00931.22	gi|222481316|ref|YP_002567552.1|	-	2.4e-06	26.9	0.0	0.071	12.3	0.0	2.3	2	0	0	2	2	2	2	NB-ARC	domain
APS_kinase	PF01583.20	gi|222481316|ref|YP_002567552.1|	-	3.5e-06	27.0	0.2	0.012	15.5	0.0	2.5	2	0	0	2	2	2	2	Adenylylsulphate	kinase
MeaB	PF03308.16	gi|222481316|ref|YP_002567552.1|	-	5.5e-06	25.6	0.1	0.00094	18.2	0.0	2.9	3	0	0	3	3	3	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
IstB_IS21	PF01695.17	gi|222481316|ref|YP_002567552.1|	-	0.00012	21.9	0.0	0.15	11.8	0.0	2.5	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
AAA_29	PF13555.6	gi|222481316|ref|YP_002567552.1|	-	0.0002	21.0	0.1	0.35	10.6	0.1	2.4	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
PhoH	PF02562.16	gi|222481316|ref|YP_002567552.1|	-	0.00022	20.8	0.7	0.1	12.0	0.2	2.9	2	2	0	2	2	2	1	PhoH-like	protein
ATP_bind_1	PF03029.17	gi|222481316|ref|YP_002567552.1|	-	0.00081	19.2	0.1	0.39	10.5	0.1	2.5	2	0	0	2	2	2	1	Conserved	hypothetical	ATP	binding	protein
Helicase_RecD	PF05127.14	gi|222481316|ref|YP_002567552.1|	-	0.0011	18.8	0.0	0.71	9.7	0.0	2.4	2	0	0	2	2	2	1	Helicase
AAA_24	PF13479.6	gi|222481316|ref|YP_002567552.1|	-	0.0013	18.5	5.9	0.0064	16.2	0.1	3.7	2	2	0	2	2	2	1	AAA	domain
NTPase_1	PF03266.15	gi|222481316|ref|YP_002567552.1|	-	0.0017	18.3	0.1	0.28	11.1	0.0	2.8	3	0	0	3	3	2	1	NTPase
MipZ	PF09140.11	gi|222481316|ref|YP_002567552.1|	-	0.0026	17.1	5.6	1.7	7.9	0.1	4.0	4	0	0	4	4	4	1	ATPase	MipZ
RsgA_GTPase	PF03193.16	gi|222481316|ref|YP_002567552.1|	-	0.0029	17.5	0.0	2.6	7.9	0.0	2.7	3	0	0	3	3	2	1	RsgA	GTPase
AAA_30	PF13604.6	gi|222481316|ref|YP_002567552.1|	-	0.007	16.1	0.9	0.7	9.6	0.6	3.1	3	1	0	4	4	4	1	AAA	domain
AAA_33	PF13671.6	gi|222481316|ref|YP_002567552.1|	-	0.0092	16.1	0.0	1.4	9.0	0.0	2.5	2	0	0	2	2	2	1	AAA	domain
RNA_helicase	PF00910.22	gi|222481316|ref|YP_002567552.1|	-	0.02	15.3	0.1	9.5	6.7	0.1	2.7	2	1	0	2	2	2	0	RNA	helicase
Zeta_toxin	PF06414.12	gi|222481316|ref|YP_002567552.1|	-	0.035	13.4	0.0	2.8	7.2	0.0	3.0	3	0	0	3	3	3	0	Zeta	toxin
AAA_25	PF13481.6	gi|222481316|ref|YP_002567552.1|	-	0.048	13.2	10.2	1.9	8.0	0.0	3.9	3	1	0	3	3	3	0	AAA	domain
AAA_7	PF12775.7	gi|222481316|ref|YP_002567552.1|	-	0.054	13.0	0.0	2.4	7.6	0.0	2.3	2	0	0	2	2	2	0	P-loop	containing	dynein	motor	region
PIF1	PF05970.14	gi|222481316|ref|YP_002567552.1|	-	0.056	12.6	0.0	1.9	7.5	0.0	2.1	2	0	0	2	2	2	0	PIF1-like	helicase
ABC_tran	PF00005.27	gi|222481316|ref|YP_002567552.1|	-	0.06	13.9	0.0	5.1	7.6	0.0	2.6	2	0	0	2	2	2	0	ABC	transporter
NACHT	PF05729.12	gi|222481316|ref|YP_002567552.1|	-	0.074	13.0	0.3	4.2	7.3	0.1	2.4	2	0	0	2	2	2	0	NACHT	domain
Thymidylate_kin	PF02223.17	gi|222481316|ref|YP_002567552.1|	-	0.094	12.4	2.1	4.7	6.8	0.0	2.9	3	0	0	3	3	2	0	Thymidylate	kinase
AAA_18	PF13238.6	gi|222481316|ref|YP_002567552.1|	-	0.13	12.8	2.0	12	6.4	0.6	3.1	3	1	0	3	3	2	0	AAA	domain
ResIII	PF04851.15	gi|222481316|ref|YP_002567552.1|	-	0.13	12.2	0.0	4.5	7.2	0.1	2.7	2	1	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
AAA_5	PF07728.14	gi|222481316|ref|YP_002567552.1|	-	0.14	12.2	0.0	4.5	7.3	0.0	2.5	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.29	gi|222481316|ref|YP_002567552.1|	-	0.15	12.5	0.1	3.9	7.9	0.0	2.6	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
VirC1	PF07015.11	gi|222481316|ref|YP_002567552.1|	-	0.16	11.3	1.1	21	4.3	0.1	2.9	3	0	0	3	3	3	0	VirC1	protein
Com_YlbF	PF06133.11	gi|222481317|ref|YP_002567553.1|	-	8.8e-17	61.6	8.9	1.1e-16	61.3	8.9	1.2	1	0	0	1	1	1	1	Control	of	competence	regulator	ComK,	YlbF/YmcA
DnaI_N	PF07319.11	gi|222481317|ref|YP_002567553.1|	-	0.054	14.2	2.1	0.054	14.2	2.1	1.8	1	1	1	2	2	2	0	Primosomal	protein	DnaI	N-terminus
PDCD7	PF16021.5	gi|222481317|ref|YP_002567553.1|	-	0.063	12.4	4.8	0.094	11.8	4.8	1.3	1	1	0	1	1	1	0	Programmed	cell	death	protein	7
TM_PBP2_N	PF16296.5	gi|222481317|ref|YP_002567553.1|	-	0.29	11.3	1.1	0.36	11.0	0.3	1.5	2	0	0	2	2	2	0	N-terminal	of	TM	subunit	in	PBP-dependent	ABC	transporters
Peptidase_M20	PF01546.28	gi|222481319|ref|YP_002567555.1|	-	9e-34	117.0	0.2	1.1e-33	116.7	0.2	1.1	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|222481319|ref|YP_002567555.1|	-	2.4e-17	62.8	0.0	7.3e-17	61.3	0.0	1.8	2	0	0	2	2	2	1	Peptidase	dimerisation	domain
Peptidase_M28	PF04389.17	gi|222481319|ref|YP_002567555.1|	-	4.7e-10	39.5	0.1	7.8e-10	38.8	0.1	1.4	1	0	0	1	1	1	1	Peptidase	family	M28
Peptidase_M42	PF05343.14	gi|222481319|ref|YP_002567555.1|	-	0.00034	19.7	0.7	0.0056	15.7	0.2	2.3	2	0	0	2	2	2	1	M42	glutamyl	aminopeptidase
Rdx	PF10262.9	gi|222481320|ref|YP_002567556.1|	-	1.2e-11	44.7	0.0	1.5e-11	44.3	0.0	1.1	1	0	0	1	1	1	1	Rdx	family
HxlR	PF01638.17	gi|222481322|ref|YP_002567558.1|	-	8.2e-20	70.5	0.0	1.2e-19	69.9	0.0	1.2	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
HTH_34	PF13601.6	gi|222481322|ref|YP_002567558.1|	-	3.8e-05	23.8	0.0	5.1e-05	23.4	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
PadR	PF03551.14	gi|222481322|ref|YP_002567558.1|	-	0.00015	21.6	0.0	0.00038	20.4	0.0	1.7	1	1	1	2	2	2	1	Transcriptional	regulator	PadR-like	family
HTH_45	PF14947.6	gi|222481322|ref|YP_002567558.1|	-	0.0016	18.4	0.0	0.0025	17.8	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix
MarR	PF01047.22	gi|222481322|ref|YP_002567558.1|	-	0.01	15.7	0.1	0.039	13.9	0.1	1.9	1	1	0	1	1	1	0	MarR	family
HTH_20	PF12840.7	gi|222481322|ref|YP_002567558.1|	-	0.15	12.1	0.0	0.27	11.3	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF505	PF04458.12	gi|222481322|ref|YP_002567558.1|	-	0.16	10.3	0.0	0.17	10.2	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF505)
ABC_tran	PF00005.27	gi|222481323|ref|YP_002567559.1|	-	1.1e-31	110.2	0.0	2e-31	109.3	0.0	1.4	2	0	0	2	2	1	1	ABC	transporter
AAA_21	PF13304.6	gi|222481323|ref|YP_002567559.1|	-	4.3e-13	49.8	0.0	3.8e-06	26.9	0.0	2.1	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_16	PF13191.6	gi|222481323|ref|YP_002567559.1|	-	7.3e-06	26.5	1.1	2.6e-05	24.7	1.1	1.9	1	1	0	1	1	1	1	AAA	ATPase	domain
SMC_N	PF02463.19	gi|222481323|ref|YP_002567559.1|	-	8.2e-05	22.1	0.0	0.00067	19.2	0.0	2.0	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|222481323|ref|YP_002567559.1|	-	0.0001	22.6	0.0	0.00018	21.8	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|222481323|ref|YP_002567559.1|	-	0.00015	21.7	0.0	0.00043	20.2	0.0	1.6	2	0	0	2	2	2	1	RsgA	GTPase
AAA_24	PF13479.6	gi|222481323|ref|YP_002567559.1|	-	0.00035	20.3	0.1	0.0025	17.6	0.0	2.2	2	1	1	3	3	3	1	AAA	domain
AAA_30	PF13604.6	gi|222481323|ref|YP_002567559.1|	-	0.00042	20.1	1.7	0.018	14.7	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_25	PF13481.6	gi|222481323|ref|YP_002567559.1|	-	0.00046	19.8	1.6	0.0017	18.0	1.1	2.1	1	1	0	1	1	1	1	AAA	domain
TrwB_AAD_bind	PF10412.9	gi|222481323|ref|YP_002567559.1|	-	0.0022	17.0	0.0	0.039	12.9	0.0	2.1	2	0	0	2	2	2	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
NB-ARC	PF00931.22	gi|222481323|ref|YP_002567559.1|	-	0.0022	17.2	0.0	0.0042	16.3	0.0	1.5	2	0	0	2	2	2	1	NB-ARC	domain
NACHT	PF05729.12	gi|222481323|ref|YP_002567559.1|	-	0.003	17.5	0.0	0.012	15.6	0.0	2.0	2	0	0	2	2	2	1	NACHT	domain
AAA_33	PF13671.6	gi|222481323|ref|YP_002567559.1|	-	0.0036	17.5	0.5	0.012	15.8	0.5	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|222481323|ref|YP_002567559.1|	-	0.0062	16.3	0.0	0.012	15.3	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_28	PF13521.6	gi|222481323|ref|YP_002567559.1|	-	0.0074	16.5	0.1	0.03	14.6	0.0	2.1	2	1	0	2	2	2	1	AAA	domain
AAA_18	PF13238.6	gi|222481323|ref|YP_002567559.1|	-	0.011	16.2	0.0	0.077	13.5	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA	PF00004.29	gi|222481323|ref|YP_002567559.1|	-	0.012	16.0	0.0	0.16	12.4	0.0	2.5	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
SbcCD_C	PF13558.6	gi|222481323|ref|YP_002567559.1|	-	0.013	15.7	0.6	0.36	11.1	0.6	2.4	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
MobB	PF03205.14	gi|222481323|ref|YP_002567559.1|	-	0.016	15.1	0.1	1.4	8.9	0.0	2.3	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
MMR_HSR1	PF01926.23	gi|222481323|ref|YP_002567559.1|	-	0.021	14.9	0.0	0.074	13.1	0.0	1.9	2	1	0	2	2	2	0	50S	ribosome-binding	GTPase
IstB_IS21	PF01695.17	gi|222481323|ref|YP_002567559.1|	-	0.032	13.9	0.0	0.11	12.3	0.0	1.8	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
TraG-D_C	PF12696.7	gi|222481323|ref|YP_002567559.1|	-	0.035	14.1	0.0	0.07	13.1	0.0	1.5	1	0	0	1	1	1	0	TraM	recognition	site	of	TraD	and	TraG
AAA_15	PF13175.6	gi|222481323|ref|YP_002567559.1|	-	0.035	13.8	0.0	0.21	11.3	0.0	1.9	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_14	PF13173.6	gi|222481323|ref|YP_002567559.1|	-	0.046	13.7	0.0	0.086	12.9	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
Peripla_BP_2	PF01497.18	gi|222481323|ref|YP_002567559.1|	-	0.07	12.7	0.0	0.12	11.9	0.0	1.3	1	0	0	1	1	1	0	Periplasmic	binding	protein
AAA_19	PF13245.6	gi|222481323|ref|YP_002567559.1|	-	0.073	13.4	1.3	0.42	11.0	1.1	2.2	1	1	1	2	2	2	0	AAA	domain
Roc	PF08477.13	gi|222481323|ref|YP_002567559.1|	-	0.078	13.2	0.0	0.19	11.9	0.0	1.6	2	0	0	2	2	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
SRP54	PF00448.22	gi|222481323|ref|YP_002567559.1|	-	0.098	12.3	0.0	0.39	10.3	0.0	1.9	2	1	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
AAA_23	PF13476.6	gi|222481323|ref|YP_002567559.1|	-	0.13	12.8	0.0	0.19	12.2	0.0	1.4	1	1	0	1	1	1	0	AAA	domain
cobW	PF02492.19	gi|222481323|ref|YP_002567559.1|	-	0.14	11.8	0.1	0.34	10.5	0.0	1.7	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
TsaE	PF02367.17	gi|222481323|ref|YP_002567559.1|	-	0.17	11.9	0.0	0.33	11.0	0.0	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
ATPase_2	PF01637.18	gi|222481323|ref|YP_002567559.1|	-	0.18	11.7	0.0	0.38	10.6	0.0	1.5	2	0	0	2	2	1	0	ATPase	domain	predominantly	from	Archaea
BPD_transp_1	PF00528.22	gi|222481324|ref|YP_002567560.1|	-	1.8e-11	44.1	11.6	1.8e-11	44.1	11.6	1.7	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
PBP_like_2	PF12849.7	gi|222481325|ref|YP_002567561.1|	-	3.9e-29	102.2	1.0	5.5e-29	101.7	1.0	1.2	1	0	0	1	1	1	1	PBP	superfamily	domain
SBP_bac_11	PF13531.6	gi|222481325|ref|YP_002567561.1|	-	0.00012	22.0	0.1	0.00041	20.2	0.1	1.9	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.9	gi|222481325|ref|YP_002567561.1|	-	0.0011	18.7	0.4	0.0083	15.9	0.1	2.3	2	0	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
PBP_like	PF12727.7	gi|222481325|ref|YP_002567561.1|	-	0.0064	15.6	1.6	0.014	14.5	0.3	2.1	2	1	0	2	2	2	1	PBP	superfamily	domain
Metallophos	PF00149.28	gi|222481326|ref|YP_002567562.1|	-	0.00017	22.1	0.0	0.00024	21.7	0.0	1.2	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|222481326|ref|YP_002567562.1|	-	0.0009	19.5	5.8	0.0031	17.7	5.8	1.7	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos_3	PF14582.6	gi|222481326|ref|YP_002567562.1|	-	0.0017	17.7	0.1	0.004	16.5	0.1	1.6	1	1	0	1	1	1	1	Metallophosphoesterase,	calcineurin	superfamily
DICT	PF10069.9	gi|222481328|ref|YP_002567564.1|	-	5.5e-12	45.6	0.0	7.4e-12	45.2	0.0	1.1	1	0	0	1	1	1	1	Sensory	domain	in	DIguanylate	Cyclases	and	Two-component	system
CbiX	PF01903.17	gi|222481329|ref|YP_002567565.1|	-	2.7e-18	66.2	0.1	5.2e-10	39.6	0.0	2.2	2	0	0	2	2	2	2	CbiX
TP_methylase	PF00590.20	gi|222481330|ref|YP_002567566.1|	-	4.1e-31	108.6	2.8	4.8e-31	108.4	2.8	1.1	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
CbiC	PF02570.15	gi|222481331|ref|YP_002567567.1|	-	8.8e-52	175.6	0.8	1e-51	175.4	0.8	1.0	1	0	0	1	1	1	1	Precorrin-8X	methylmutase
AAA_33	PF13671.6	gi|222481331|ref|YP_002567567.1|	-	0.072	13.2	0.1	1.6	8.9	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
CobN-Mg_chel	PF02514.16	gi|222481332|ref|YP_002567568.1|	-	0	1213.2	0.0	0	1208.5	0.0	2.0	1	1	0	1	1	1	1	CobN/Magnesium	Chelatase
LexA_DNA_bind	PF01726.16	gi|222481332|ref|YP_002567568.1|	-	0.029	14.1	0.0	0.077	12.8	0.0	1.7	1	0	0	1	1	1	0	LexA	DNA	binding	domain
AAA_lid_2	PF17863.1	gi|222481333|ref|YP_002567569.1|	-	8.5e-22	76.8	5.4	8.5e-22	76.8	5.4	2.3	2	0	0	2	2	2	1	AAA	lid	domain
VWA_2	PF13519.6	gi|222481333|ref|YP_002567569.1|	-	1.5e-14	54.6	0.0	4e-14	53.2	0.0	1.7	2	0	0	2	2	2	1	von	Willebrand	factor	type	A	domain
Mg_chelatase	PF01078.21	gi|222481333|ref|YP_002567569.1|	-	1.3e-13	50.8	0.0	9.8e-13	48.0	0.0	2.1	1	1	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
AAA_5	PF07728.14	gi|222481333|ref|YP_002567569.1|	-	4.2e-10	39.8	0.0	1.2e-05	25.4	0.0	2.4	2	0	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
VWA	PF00092.28	gi|222481333|ref|YP_002567569.1|	-	1.3e-08	35.3	0.0	2.2e-08	34.6	0.0	1.3	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
MCM	PF00493.23	gi|222481333|ref|YP_002567569.1|	-	5.7e-05	22.3	0.0	0.00021	20.5	0.0	1.8	2	0	0	2	2	2	1	MCM	P-loop	domain
AAA_16	PF13191.6	gi|222481333|ref|YP_002567569.1|	-	0.001	19.5	0.4	0.0091	16.4	0.4	2.6	1	1	0	1	1	1	1	AAA	ATPase	domain
Sigma54_activat	PF00158.26	gi|222481333|ref|YP_002567569.1|	-	0.016	14.9	0.0	0.24	11.1	0.0	2.1	2	0	0	2	2	2	0	Sigma-54	interaction	domain
BUD22	PF09073.10	gi|222481333|ref|YP_002567569.1|	-	4.3	6.6	19.7	6.4	6.0	19.7	1.3	1	0	0	1	1	1	0	BUD22
CbtB	PF09489.10	gi|222481334|ref|YP_002567570.1|	-	4e-11	42.8	3.7	4e-11	42.8	3.7	1.5	2	0	0	2	2	2	1	Probable	cobalt	transporter	subunit	(CbtB)
CbtA	PF09490.10	gi|222481335|ref|YP_002567571.1|	-	3.5e-38	131.7	27.6	4.2e-38	131.5	27.6	1.0	1	0	0	1	1	1	1	Probable	cobalt	transporter	subunit	(CbtA)
2Fe-2S_thioredx	PF01257.19	gi|222481336|ref|YP_002567572.1|	-	0.011	15.6	0.0	0.015	15.2	0.0	1.2	1	0	0	1	1	1	0	Thioredoxin-like	[2Fe-2S]	ferredoxin
DUF1636	PF07845.11	gi|222481336|ref|YP_002567572.1|	-	0.015	15.7	0.0	0.019	15.4	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1636)
Suc_Fer-like	PF06999.12	gi|222481336|ref|YP_002567572.1|	-	0.053	13.4	0.0	0.074	12.9	0.0	1.2	1	0	0	1	1	1	0	Sucrase/ferredoxin-like
PQQ_2	PF13360.6	gi|222481339|ref|YP_002567575.1|	-	4.3e-12	46.1	10.7	1.5e-07	31.2	2.2	3.4	1	1	2	3	3	3	3	PQQ-like	domain
PQQ_3	PF13570.6	gi|222481339|ref|YP_002567575.1|	-	3.8e-09	36.8	41.8	0.00067	20.1	1.1	9.4	8	2	0	8	8	8	4	PQQ-like	domain
PQQ	PF01011.21	gi|222481339|ref|YP_002567575.1|	-	0.0014	18.4	9.3	2.1	8.4	0.1	6.6	8	1	0	8	8	8	2	PQQ	enzyme	repeat
DUF3209	PF11483.8	gi|222481340|ref|YP_002567576.1|	-	3.9e-54	182.4	2.2	4.4e-54	182.2	2.2	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3209)
T3SS_needle_E	PF08988.10	gi|222481340|ref|YP_002567576.1|	-	0.006	16.7	0.1	0.012	15.8	0.1	1.5	1	0	0	1	1	1	1	Type	III	secretion	system,	cytoplasmic	E	component	of	needle
DUF2278	PF10042.9	gi|222481340|ref|YP_002567576.1|	-	0.19	11.7	0.0	0.2	11.7	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2278)
CbiX	PF01903.17	gi|222481341|ref|YP_002567577.1|	-	9.5e-45	151.3	0.0	4.6e-22	78.4	0.1	2.5	2	0	0	2	2	2	2	CbiX
2Fe-2S_thioredx	PF01257.19	gi|222481341|ref|YP_002567577.1|	-	5.8e-08	32.7	0.1	9.8e-08	32.0	0.1	1.3	1	0	0	1	1	1	1	Thioredoxin-like	[2Fe-2S]	ferredoxin
CbiK	PF06180.11	gi|222481341|ref|YP_002567577.1|	-	7.5e-05	22.2	0.0	0.029	13.7	0.0	2.1	1	1	1	2	2	2	2	Cobalt	chelatase	(CbiK)
Suc_Fer-like	PF06999.12	gi|222481341|ref|YP_002567577.1|	-	0.031	14.1	0.0	0.075	12.9	0.0	1.6	1	1	0	1	1	1	0	Sucrase/ferredoxin-like
Fer4_15	PF13459.6	gi|222481343|ref|YP_002567579.1|	-	1.5e-17	64.1	5.5	2e-17	63.7	5.5	1.2	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.6	gi|222481343|ref|YP_002567579.1|	-	0.0088	16.6	2.6	0.015	15.8	2.6	1.6	1	1	0	1	1	1	1	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
TP_methylase	PF00590.20	gi|222481344|ref|YP_002567580.1|	-	7.2e-37	127.4	0.3	8.9e-37	127.1	0.3	1.1	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
TP_methylase	PF00590.20	gi|222481345|ref|YP_002567581.1|	-	9.6e-43	146.6	1.0	1.1e-42	146.4	1.0	1.1	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
MoCF_biosynth	PF00994.24	gi|222481345|ref|YP_002567581.1|	-	0.036	13.7	0.3	0.1	12.3	0.1	1.8	2	0	0	2	2	2	0	Probable	molybdopterin	binding	domain
CbiG_N	PF11760.8	gi|222481346|ref|YP_002567582.1|	-	5.9e-28	96.7	0.0	1.2e-27	95.7	0.0	1.6	1	0	0	1	1	1	1	Cobalamin	synthesis	G	N-terminal
CbiG_C	PF01890.16	gi|222481346|ref|YP_002567582.1|	-	9.7e-22	77.7	0.0	2.3e-21	76.5	0.0	1.7	2	0	0	2	2	2	1	Cobalamin	synthesis	G	C-terminus
AIRS	PF00586.24	gi|222481346|ref|YP_002567582.1|	-	0.0016	19.1	0.8	0.0041	17.8	0.8	1.7	1	0	0	1	1	1	1	AIR	synthase	related	protein,	N-terminal	domain
TP_methylase	PF00590.20	gi|222481347|ref|YP_002567583.1|	-	3.5e-41	141.5	0.7	4.4e-41	141.2	0.7	1.1	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
RraB	PF06877.11	gi|222481347|ref|YP_002567583.1|	-	0.0014	19.3	0.0	0.067	13.9	0.0	2.5	2	0	0	2	2	2	1	Regulator	of	ribonuclease	activity	B
Radical_SAM	PF04055.21	gi|222481347|ref|YP_002567583.1|	-	0.0023	18.3	0.2	0.0072	16.7	0.1	1.9	1	1	1	2	2	2	1	Radical	SAM	superfamily
Arteri_nsp7a	PF16749.5	gi|222481347|ref|YP_002567583.1|	-	0.14	12.3	0.3	10	6.3	0.1	2.2	2	0	0	2	2	2	0	Arterivirus	nonstructural	protein	7	alpha
TP_methylase	PF00590.20	gi|222481348|ref|YP_002567584.1|	-	9.1e-37	127.1	1.5	1.7e-36	126.2	1.5	1.4	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
Methyltransf_25	PF13649.6	gi|222481349|ref|YP_002567585.1|	-	0.00016	22.3	0.1	0.00029	21.5	0.1	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|222481349|ref|YP_002567585.1|	-	0.00069	20.2	0.1	0.0016	19.0	0.1	1.7	1	1	0	1	1	1	1	Methyltransferase	domain
Cons_hypoth95	PF03602.15	gi|222481349|ref|YP_002567585.1|	-	0.0023	17.6	0.0	0.0032	17.1	0.0	1.2	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
PCMT	PF01135.19	gi|222481349|ref|YP_002567585.1|	-	0.0034	17.2	0.0	0.0044	16.8	0.0	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
DUF5130	PF17174.4	gi|222481349|ref|YP_002567585.1|	-	0.0041	17.3	0.2	0.0093	16.2	0.2	1.6	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF5130)
NAD_binding_10	PF13460.6	gi|222481349|ref|YP_002567585.1|	-	0.0092	15.9	0.7	0.013	15.4	0.7	1.3	1	0	0	1	1	1	1	NAD(P)H-binding
MTS	PF05175.14	gi|222481349|ref|YP_002567585.1|	-	0.025	14.1	0.1	0.051	13.1	0.0	1.5	2	0	0	2	2	2	0	Methyltransferase	small	domain
GATase_3	PF07685.14	gi|222481349|ref|YP_002567585.1|	-	0.035	13.7	0.0	0.23	11.1	0.0	2.0	2	0	0	2	2	2	0	CobB/CobQ-like	glutamine	amidotransferase	domain
CMAS	PF02353.20	gi|222481349|ref|YP_002567585.1|	-	0.086	12.1	0.0	0.12	11.6	0.0	1.2	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
DOT1	PF08123.13	gi|222481349|ref|YP_002567585.1|	-	0.12	11.8	0.0	0.18	11.3	0.0	1.2	1	0	0	1	1	1	0	Histone	methylation	protein	DOT1
RrnaAD	PF00398.20	gi|222481349|ref|YP_002567585.1|	-	0.19	10.7	0.0	0.27	10.3	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
DUF892	PF05974.12	gi|222481350|ref|YP_002567586.1|	-	0.074	13.1	0.0	0.078	13.0	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF892)
RHH_1	PF01402.21	gi|222481350|ref|YP_002567586.1|	-	0.15	12.0	0.6	0.58	10.2	0.6	1.8	1	1	0	1	1	1	0	Ribbon-helix-helix	protein,	copG	family
Usp	PF00582.26	gi|222481351|ref|YP_002567587.1|	-	1.4e-26	93.6	3.7	2.3e-26	93.0	3.7	1.3	1	1	0	1	1	1	1	Universal	stress	protein	family
HTH_20	PF12840.7	gi|222481352|ref|YP_002567588.1|	-	0.0063	16.5	0.3	0.012	15.6	0.3	1.5	1	1	0	1	1	1	1	Helix-turn-helix	domain
DUF3213	PF11491.8	gi|222481352|ref|YP_002567588.1|	-	0.037	14.2	0.0	0.055	13.7	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3213)
PAS_4	PF08448.10	gi|222481353|ref|YP_002567589.1|	-	1.4e-38	131.5	17.6	1.4e-14	54.3	0.2	5.3	5	0	0	5	5	5	4	PAS	fold
PAS	PF00989.25	gi|222481353|ref|YP_002567589.1|	-	1.2e-36	125.1	0.7	1.4e-12	47.6	0.0	4.6	4	0	0	4	4	4	4	PAS	fold
BAT	PF15915.5	gi|222481353|ref|YP_002567589.1|	-	1.3e-32	112.9	2.7	1.3e-32	112.9	2.7	4.2	3	2	2	5	5	5	1	GAF	and	HTH_10	associated	domain
HTH_10	PF04967.12	gi|222481353|ref|YP_002567589.1|	-	3.7e-22	77.9	0.0	1.8e-21	75.7	0.0	2.2	2	0	0	2	2	2	1	HTH	DNA	binding	domain
PAS_9	PF13426.7	gi|222481353|ref|YP_002567589.1|	-	6e-22	77.9	0.1	5.6e-10	39.4	0.0	4.1	4	0	0	4	4	4	2	PAS	domain
PAS_8	PF13188.7	gi|222481353|ref|YP_002567589.1|	-	2.4e-20	72.1	4.3	2.6e-08	33.7	0.2	4.6	4	0	0	4	4	4	3	PAS	domain
GAF_2	PF13185.6	gi|222481353|ref|YP_002567589.1|	-	1.5e-16	61.0	0.5	1.5e-16	61.0	0.5	3.3	3	1	1	4	4	3	1	GAF	domain
PAS_3	PF08447.12	gi|222481353|ref|YP_002567589.1|	-	1.2e-13	51.2	0.0	1e-09	38.5	0.0	3.5	3	0	0	3	3	3	2	PAS	fold
GAF	PF01590.26	gi|222481353|ref|YP_002567589.1|	-	1.1e-11	45.5	0.2	1.4e-10	41.9	0.1	2.9	2	1	0	2	2	2	1	GAF	domain
PAS_7	PF12860.7	gi|222481353|ref|YP_002567589.1|	-	8.2e-09	35.6	1.8	0.042	14.0	0.0	4.7	5	1	0	5	5	4	2	PAS	fold
GAF_3	PF13492.6	gi|222481353|ref|YP_002567589.1|	-	3.2e-08	34.0	0.1	1.2e-07	32.1	0.1	2.0	1	0	0	1	1	1	1	GAF	domain
HTH_24	PF13412.6	gi|222481353|ref|YP_002567589.1|	-	0.00072	19.1	0.0	0.14	11.7	0.0	2.6	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|222481353|ref|YP_002567589.1|	-	0.0028	17.5	0.3	2	8.4	0.0	3.1	2	0	0	2	2	2	1	MarR	family
HTH_20	PF12840.7	gi|222481353|ref|YP_002567589.1|	-	0.0031	17.6	6.0	0.0083	16.2	0.2	3.7	4	0	0	4	4	4	1	Helix-turn-helix	domain
Sigma70_r4	PF04545.16	gi|222481353|ref|YP_002567589.1|	-	0.011	15.2	0.0	1.3	8.6	0.0	2.7	2	0	0	2	2	2	0	Sigma-70,	region	4
PAS_12	PF18095.1	gi|222481353|ref|YP_002567589.1|	-	0.032	13.9	0.0	0.87	9.2	0.0	2.4	2	0	0	2	2	2	0	UPF0242	C-terminal	PAS-like	domain
TrmB	PF01978.19	gi|222481353|ref|YP_002567589.1|	-	0.033	14.1	0.1	0.48	10.4	0.0	2.8	2	1	1	3	3	3	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_17	PF12728.7	gi|222481353|ref|YP_002567589.1|	-	0.034	14.3	0.0	2.6	8.3	0.0	2.6	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_30	PF13556.6	gi|222481353|ref|YP_002567589.1|	-	0.045	13.6	0.1	11	5.9	0.0	3.1	3	0	0	3	3	2	0	PucR	C-terminal	helix-turn-helix	domain
Autoind_bind	PF03472.15	gi|222481353|ref|YP_002567589.1|	-	0.064	12.7	0.2	0.17	11.4	0.2	1.7	1	0	0	1	1	1	0	Autoinducer	binding	domain
H_kinase_N	PF12282.8	gi|222481353|ref|YP_002567589.1|	-	3.3	7.6	9.5	3.8	7.4	0.0	4.6	4	0	0	4	4	4	0	Signal	transduction	histidine	kinase
PBP	PF01161.20	gi|222481354|ref|YP_002567590.1|	-	1.1e-32	113.2	0.0	1.2e-32	112.9	0.0	1.0	1	0	0	1	1	1	1	Phosphatidylethanolamine-binding	protein
HTH_20	PF12840.7	gi|222481356|ref|YP_002567592.1|	-	7.9e-07	29.0	0.0	1.1e-06	28.5	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_45	PF14947.6	gi|222481356|ref|YP_002567592.1|	-	3.4e-05	23.8	0.0	4.2e-05	23.4	0.0	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_27	PF13463.6	gi|222481356|ref|YP_002567592.1|	-	0.00028	21.3	0.1	0.00037	20.9	0.1	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.19	gi|222481356|ref|YP_002567592.1|	-	0.0045	16.8	0.0	0.01	15.7	0.0	1.7	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Replic_Relax	PF13814.6	gi|222481356|ref|YP_002567592.1|	-	0.0055	16.8	0.0	0.0067	16.5	0.0	1.1	1	0	0	1	1	1	1	Replication-relaxation
MarR	PF01047.22	gi|222481356|ref|YP_002567592.1|	-	0.0088	15.9	0.0	0.015	15.3	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HxlR	PF01638.17	gi|222481356|ref|YP_002567592.1|	-	0.017	15.0	0.0	0.022	14.6	0.0	1.1	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
HTH_5	PF01022.20	gi|222481356|ref|YP_002567592.1|	-	0.041	13.7	0.0	0.061	13.2	0.0	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
DUF4364	PF14277.6	gi|222481356|ref|YP_002567592.1|	-	0.15	11.8	0.0	0.2	11.4	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
Sgf11	PF08209.11	gi|222481357|ref|YP_002567593.1|	-	0.0012	18.4	1.5	0.0012	18.4	1.5	1.9	2	0	0	2	2	2	1	Sgf11	(transcriptional	regulation	protein)
HypA	PF01155.19	gi|222481357|ref|YP_002567593.1|	-	0.053	13.6	0.7	0.054	13.5	0.7	1.1	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
HTH_47	PF16221.5	gi|222481358|ref|YP_002567594.1|	-	0.096	12.3	0.0	0.19	11.3	0.0	1.5	1	0	0	1	1	1	0	winged	helix-turn-helix
HalOD1	PF18545.1	gi|222481361|ref|YP_002567597.1|	-	5.9e-18	64.9	0.0	8.8e-18	64.4	0.0	1.3	1	0	0	1	1	1	1	Halobacterial	output	domain	1
Epimerase	PF01370.21	gi|222481362|ref|YP_002567598.1|	-	4.7e-61	206.3	0.0	5.7e-61	206.0	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|222481362|ref|YP_002567598.1|	-	1.3e-57	195.7	0.0	3.3e-57	194.4	0.0	1.6	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
3Beta_HSD	PF01073.19	gi|222481362|ref|YP_002567598.1|	-	3.2e-27	95.2	0.0	4.3e-27	94.8	0.0	1.2	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.17	gi|222481362|ref|YP_002567598.1|	-	3.7e-24	85.3	0.5	4.6e-24	85.0	0.5	1.0	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Polysacc_synt_2	PF02719.15	gi|222481362|ref|YP_002567598.1|	-	5.4e-22	78.3	0.1	8.2e-21	74.4	0.1	2.5	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.12	gi|222481362|ref|YP_002567598.1|	-	1.1e-12	47.7	0.0	2.5e-09	36.7	0.0	2.4	1	1	1	2	2	2	2	Male	sterility	protein
NAD_binding_10	PF13460.6	gi|222481362|ref|YP_002567598.1|	-	6.4e-10	39.2	6.3	6.5e-10	39.2	1.7	2.3	1	1	1	2	2	2	1	NAD(P)H-binding
NmrA	PF05368.13	gi|222481362|ref|YP_002567598.1|	-	0.00045	19.8	0.6	0.0013	18.3	0.2	1.9	2	1	0	2	2	2	1	NmrA-like	family
VAPB_antitox	PF02697.14	gi|222481364|ref|YP_002567600.1|	-	0.051	14.4	0.9	0.11	13.2	0.0	2.0	3	0	0	3	3	3	0	Putative	antitoxin
TrmO_C	PF18389.1	gi|222481364|ref|YP_002567600.1|	-	0.11	12.6	0.0	0.25	11.5	0.0	1.6	1	0	0	1	1	1	0	TrmO	C-terminal	domain
DsbD	PF02683.15	gi|222481366|ref|YP_002567602.1|	-	0.00074	19.5	0.1	0.001	19.0	0.1	1.2	1	0	0	1	1	1	1	Cytochrome	C	biogenesis	protein	transmembrane	region
Peptidase_M56	PF05569.11	gi|222481366|ref|YP_002567602.1|	-	0.0095	15.2	0.0	0.027	13.7	0.0	1.7	2	0	0	2	2	2	1	BlaR1	peptidase	M56
SprT-like	PF10263.9	gi|222481366|ref|YP_002567602.1|	-	0.024	14.5	0.0	0.033	14.1	0.0	1.3	1	0	0	1	1	1	0	SprT-like	family
Zn_peptidase_2	PF04298.12	gi|222481366|ref|YP_002567602.1|	-	0.12	11.8	0.0	0.16	11.3	0.0	1.2	1	0	0	1	1	1	0	Putative	neutral	zinc	metallopeptidase
Pkr1	PF08636.10	gi|222481366|ref|YP_002567602.1|	-	0.36	11.0	3.6	1.7	8.8	2.5	2.2	1	1	1	2	2	2	0	ER	protein	Pkr1
TcpE	PF12648.7	gi|222481366|ref|YP_002567602.1|	-	0.39	11.3	2.1	0.83	10.2	2.1	1.5	1	0	0	1	1	1	0	TcpE	family
LapA_dom	PF06305.11	gi|222481366|ref|YP_002567602.1|	-	7	6.5	6.1	1.2	9.0	0.5	2.2	1	1	1	2	2	2	0	Lipopolysaccharide	assembly	protein	A	domain
FadA	PF09403.10	gi|222481367|ref|YP_002567603.1|	-	0.019	15.4	0.6	0.18	12.3	0.1	2.9	1	1	1	2	2	2	0	Adhesion	protein	FadA
ING	PF12998.7	gi|222481367|ref|YP_002567603.1|	-	1.1	9.9	4.2	5.1	7.7	0.2	3.6	4	0	0	4	4	4	0	Inhibitor	of	growth	proteins	N-terminal	histone-binding
XhlA	PF10779.9	gi|222481371|ref|YP_002567607.1|	-	0.0022	18.1	0.4	0.0044	17.2	0.4	1.5	1	0	0	1	1	1	1	Haemolysin	XhlA
Tropomyosin	PF00261.20	gi|222481371|ref|YP_002567607.1|	-	0.018	14.4	0.3	0.028	13.8	0.3	1.3	1	0	0	1	1	1	0	Tropomyosin
COG2	PF06148.11	gi|222481371|ref|YP_002567607.1|	-	0.11	12.6	0.0	0.17	12.0	0.0	1.2	1	0	0	1	1	1	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
EzrA	PF06160.12	gi|222481371|ref|YP_002567607.1|	-	0.11	10.7	0.1	0.13	10.4	0.1	1.1	1	0	0	1	1	1	0	Septation	ring	formation	regulator,	EzrA
MarR_2	PF12802.7	gi|222481372|ref|YP_002567608.1|	-	0.049	13.5	0.0	0.072	13.0	0.0	1.3	1	0	0	1	1	1	0	MarR	family
Resolvase	PF00239.21	gi|222481376|ref|YP_002567612.1|	-	2.4e-07	31.0	1.1	4.7e-07	30.0	1.1	1.5	1	1	0	1	1	1	1	Resolvase,	N	terminal	domain
Sigma70_r4_2	PF08281.12	gi|222481376|ref|YP_002567612.1|	-	0.026	14.2	0.0	0.16	11.6	0.0	2.1	2	0	0	2	2	2	0	Sigma-70,	region	4
Big_1	PF02369.16	gi|222481377|ref|YP_002567613.1|	-	0.035	14.1	0.0	2	8.4	0.0	2.0	2	0	0	2	2	2	0	Bacterial	Ig-like	domain	(group	1)
MazE_antitoxin	PF04014.18	gi|222481377|ref|YP_002567613.1|	-	0.058	13.3	0.2	0.21	11.6	0.2	1.8	1	1	0	1	1	1	0	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
FliG_C	PF01706.16	gi|222481378|ref|YP_002567614.1|	-	0.023	14.9	0.7	0.047	13.9	0.7	1.6	1	1	0	1	1	1	0	FliG	C-terminal	domain
HTH_13	PF11972.8	gi|222481378|ref|YP_002567614.1|	-	0.092	12.8	0.0	0.18	11.9	0.0	1.5	1	0	0	1	1	1	0	HTH	DNA	binding	domain
DDE_Tnp_1	PF01609.21	gi|222481379|ref|YP_002567615.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
Cdc6_C	PF09079.11	gi|222481381|ref|YP_002567617.1|	-	1.5e-17	63.3	0.3	3.8e-17	62.0	0.1	1.8	2	0	0	2	2	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|222481381|ref|YP_002567617.1|	-	5.8e-12	46.1	0.0	2.1e-11	44.3	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|222481381|ref|YP_002567617.1|	-	1.2e-09	38.8	3.0	6.1e-09	36.5	0.1	3.0	2	2	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.29	gi|222481381|ref|YP_002567617.1|	-	1.9e-07	31.5	0.0	5.8e-07	30.0	0.0	1.8	2	0	0	2	2	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
NACHT	PF05729.12	gi|222481381|ref|YP_002567617.1|	-	5.5e-06	26.4	0.0	1.1e-05	25.4	0.0	1.5	1	0	0	1	1	1	1	NACHT	domain
Sigma54_activat	PF00158.26	gi|222481381|ref|YP_002567617.1|	-	5.9e-05	22.8	0.0	0.00014	21.6	0.0	1.6	2	0	0	2	2	1	1	Sigma-54	interaction	domain
ATPase_2	PF01637.18	gi|222481381|ref|YP_002567617.1|	-	7.5e-05	22.8	0.3	0.00017	21.6	0.0	1.7	2	0	0	2	2	2	1	ATPase	domain	predominantly	from	Archaea
DUF815	PF05673.13	gi|222481381|ref|YP_002567617.1|	-	0.0008	18.6	0.0	0.0016	17.7	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
NB-ARC	PF00931.22	gi|222481381|ref|YP_002567617.1|	-	0.00083	18.6	0.0	0.0021	17.3	0.0	1.6	2	0	0	2	2	2	1	NB-ARC	domain
DUF2791	PF10923.8	gi|222481381|ref|YP_002567617.1|	-	0.0047	15.8	0.9	0.0093	14.9	0.1	1.8	2	0	0	2	2	2	1	P-loop	Domain	of	unknown	function	(DUF2791)
RNA_helicase	PF00910.22	gi|222481381|ref|YP_002567617.1|	-	0.0095	16.3	0.2	0.081	13.3	0.2	2.5	1	1	0	1	1	1	1	RNA	helicase
TniB	PF05621.11	gi|222481381|ref|YP_002567617.1|	-	0.0098	15.3	0.0	0.021	14.2	0.0	1.5	1	0	0	1	1	1	1	Bacterial	TniB	protein
AAA_5	PF07728.14	gi|222481381|ref|YP_002567617.1|	-	0.011	15.7	0.0	0.051	13.6	0.0	2.2	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
ABC_tran	PF00005.27	gi|222481381|ref|YP_002567617.1|	-	0.02	15.4	0.3	0.051	14.1	0.0	1.9	2	2	0	2	2	2	0	ABC	transporter
AAA_2	PF07724.14	gi|222481381|ref|YP_002567617.1|	-	0.029	14.5	0.0	0.06	13.5	0.0	1.5	1	0	0	1	1	1	0	AAA	domain	(Cdc48	subfamily)
Zeta_toxin	PF06414.12	gi|222481381|ref|YP_002567617.1|	-	0.032	13.5	0.0	0.079	12.2	0.0	1.7	1	0	0	1	1	1	0	Zeta	toxin
Pro_3_hydrox_C	PF05373.11	gi|222481381|ref|YP_002567617.1|	-	0.037	14.1	0.0	0.15	12.2	0.0	2.1	2	0	0	2	2	2	0	L-proline	3-hydroxylase,	C-terminal
Rad17	PF03215.15	gi|222481381|ref|YP_002567617.1|	-	0.061	13.2	0.0	0.2	11.6	0.0	1.8	2	0	0	2	2	2	0	Rad17	P-loop	domain
AAA_assoc_2	PF16193.5	gi|222481381|ref|YP_002567617.1|	-	0.079	13.3	0.5	0.2	12.0	0.2	1.8	2	0	0	2	2	1	0	AAA	C-terminal	domain
AAA_7	PF12775.7	gi|222481381|ref|YP_002567617.1|	-	0.089	12.3	0.0	0.17	11.4	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_18	PF13238.6	gi|222481381|ref|YP_002567617.1|	-	0.11	13.0	0.7	0.83	10.2	0.2	2.6	2	1	0	2	2	2	0	AAA	domain
TsaE	PF02367.17	gi|222481381|ref|YP_002567617.1|	-	0.12	12.4	0.0	0.22	11.5	0.0	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
IstB_IS21	PF01695.17	gi|222481381|ref|YP_002567617.1|	-	0.13	11.9	0.0	0.38	10.5	0.0	1.7	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_23	PF13476.6	gi|222481381|ref|YP_002567617.1|	-	0.27	11.7	5.4	0.62	10.5	5.4	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_31	PF13614.6	gi|222481384|ref|YP_002567620.1|	-	6.2e-34	117.4	0.0	8.5e-34	117.0	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|222481384|ref|YP_002567620.1|	-	5.5e-10	39.4	0.0	8.4e-10	38.8	0.0	1.4	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
CBP_BcsQ	PF06564.12	gi|222481384|ref|YP_002567620.1|	-	1.1e-09	38.1	0.0	1.8e-09	37.5	0.0	1.2	1	0	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
MipZ	PF09140.11	gi|222481384|ref|YP_002567620.1|	-	2.1e-08	33.8	0.0	0.0013	18.0	0.0	2.2	1	1	1	2	2	2	2	ATPase	MipZ
ParA	PF10609.9	gi|222481384|ref|YP_002567620.1|	-	0.0027	17.2	0.0	0.012	15.0	0.0	1.9	2	0	0	2	2	2	1	NUBPL	iron-transfer	P-loop	NTPase
ArsA_ATPase	PF02374.15	gi|222481384|ref|YP_002567620.1|	-	0.05	12.8	0.0	0.084	12.0	0.0	1.4	1	1	0	1	1	1	0	Anion-transporting	ATPase
DDE_Tnp_1	PF01609.21	gi|222481385|ref|YP_002567621.1|	-	4e-07	29.9	0.1	6.5e-07	29.2	0.1	1.3	1	0	0	1	1	1	1	Transposase	DDE	domain
CinA	PF02464.17	gi|222481385|ref|YP_002567621.1|	-	0.037	13.6	0.0	0.073	12.6	0.0	1.4	1	0	0	1	1	1	0	Competence-damaged	protein
DUF2922	PF11148.8	gi|222481385|ref|YP_002567621.1|	-	0.075	12.8	0.1	4.1	7.2	0.0	3.0	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2922)
PBC	PF03792.13	gi|222481386|ref|YP_002567622.1|	-	0.1	12.4	0.1	0.16	11.7	0.1	1.3	1	0	0	1	1	1	0	PBC	domain
Phage_integrase	PF00589.22	gi|222481387|ref|YP_002567623.1|	-	0.11	12.2	0.0	1.2	9.0	0.0	2.4	2	1	1	3	3	3	0	Phage	integrase	family
RHH_1	PF01402.21	gi|222481387|ref|YP_002567623.1|	-	5.6	7.0	7.2	0.51	10.3	0.4	2.5	2	0	0	2	2	2	0	Ribbon-helix-helix	protein,	copG	family
N6_Mtase	PF02384.16	gi|222481388|ref|YP_002567624.1|	-	2.2e-28	99.5	0.0	3.2e-28	98.9	0.0	1.2	1	0	0	1	1	1	1	N-6	DNA	Methylase
Eco57I	PF07669.11	gi|222481388|ref|YP_002567624.1|	-	4.7e-15	56.0	0.0	1.2e-14	54.7	0.0	1.6	1	0	0	1	1	1	1	Eco57I	restriction-modification	methylase
HSDR_N_2	PF13588.6	gi|222481388|ref|YP_002567624.1|	-	4.5e-06	26.6	0.0	1.6e-05	24.8	0.0	1.9	1	0	0	1	1	1	1	Type	I	restriction	enzyme	R	protein	N	terminus	(HSDR_N)
HSDR_N	PF04313.14	gi|222481388|ref|YP_002567624.1|	-	5.7e-06	26.4	0.0	1.3e-05	25.2	0.0	1.6	1	0	0	1	1	1	1	Type	I	restriction	enzyme	R	protein	N	terminus	(HSDR_N)
UPF0020	PF01170.18	gi|222481388|ref|YP_002567624.1|	-	0.00066	19.4	0.0	0.028	14.1	0.0	2.3	2	0	0	2	2	2	1	Putative	RNA	methylase	family	UPF0020
PRC2_HTH_1	PF18118.1	gi|222481388|ref|YP_002567624.1|	-	0.11	13.3	0.4	0.3	11.9	0.4	1.7	1	0	0	1	1	1	0	Polycomb	repressive	complex	2	tri-helical	domain
OB_aCoA_assoc	PF01796.17	gi|222481390|ref|YP_002567626.1|	-	3.8e-06	26.8	1.2	5.7e-06	26.2	1.2	1.2	1	0	0	1	1	1	1	DUF35	OB-fold	domain,	acyl-CoA-associated
Cys_rich_CPXG	PF14255.6	gi|222481390|ref|YP_002567626.1|	-	0.016	15.1	0.1	0.031	14.2	0.1	1.5	1	0	0	1	1	1	0	Cysteine-rich	CPXCG
zinc-ribbons_6	PF07191.12	gi|222481390|ref|YP_002567626.1|	-	0.044	13.8	0.1	0.067	13.2	0.1	1.2	1	0	0	1	1	1	0	zinc-ribbons
DUF35_N	PF12172.8	gi|222481390|ref|YP_002567626.1|	-	0.065	13.1	1.2	0.096	12.6	1.2	1.2	1	0	0	1	1	1	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
DUF3039	PF11238.8	gi|222481390|ref|YP_002567626.1|	-	0.077	12.8	0.4	10	5.9	0.1	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3039)
Thiolase_N	PF00108.23	gi|222481391|ref|YP_002567627.1|	-	2.1e-59	201.0	0.0	2.7e-59	200.6	0.0	1.2	1	0	0	1	1	1	1	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.18	gi|222481391|ref|YP_002567627.1|	-	1.1e-08	34.7	0.1	8.5e-08	31.9	0.1	2.1	2	0	0	2	2	2	1	Thiolase,	C-terminal	domain
Ketoacyl-synt_C	PF02801.22	gi|222481391|ref|YP_002567627.1|	-	0.00016	21.6	0.4	1.3	9.1	0.0	3.5	3	1	0	3	3	3	2	Beta-ketoacyl	synthase,	C-terminal	domain
ketoacyl-synt	PF00109.26	gi|222481391|ref|YP_002567627.1|	-	0.017	14.7	2.8	0.16	11.5	0.7	2.5	2	1	1	3	3	3	0	Beta-ketoacyl	synthase,	N-terminal	domain
Usp	PF00582.26	gi|222481392|ref|YP_002567628.1|	-	1.2e-17	64.7	0.0	1.3e-17	64.6	0.0	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
Orthopox_F14	PF06076.12	gi|222481392|ref|YP_002567628.1|	-	0.17	12.1	1.7	0.27	11.5	0.6	1.8	1	1	1	2	2	2	0	Orthopoxvirus	F14	protein
Cupin_2	PF07883.11	gi|222481393|ref|YP_002567629.1|	-	4.7e-13	48.6	0.7	6.3e-13	48.2	0.7	1.2	1	0	0	1	1	1	1	Cupin	domain
Cupin_3	PF05899.12	gi|222481393|ref|YP_002567629.1|	-	0.00075	19.1	0.0	0.0013	18.4	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF861)
AraC_binding	PF02311.19	gi|222481393|ref|YP_002567629.1|	-	0.0044	16.9	0.2	0.0063	16.4	0.2	1.2	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
Cupin_1	PF00190.22	gi|222481393|ref|YP_002567629.1|	-	0.0068	16.0	0.0	0.0084	15.7	0.0	1.2	1	0	0	1	1	1	1	Cupin
AraC_binding_2	PF14525.6	gi|222481393|ref|YP_002567629.1|	-	0.012	15.3	0.0	0.016	14.9	0.0	1.3	1	0	0	1	1	1	0	AraC-binding-like	domain
Ppnp	PF06865.11	gi|222481393|ref|YP_002567629.1|	-	0.038	14.4	0.0	0.061	13.7	0.0	1.3	1	0	0	1	1	1	0	Pyrimidine/purine	nucleoside	phosphorylase
DctM	PF06808.12	gi|222481394|ref|YP_002567630.1|	-	5.1e-55	187.0	54.6	1e-54	186.0	54.6	1.5	1	0	0	1	1	1	1	Tripartite	ATP-independent	periplasmic	transporter,	DctM	component
NMT1_3	PF16868.5	gi|222481395|ref|YP_002567631.1|	-	5.7e-31	108.0	0.0	6.5e-31	107.8	0.0	1.0	1	0	0	1	1	1	1	NMT1-like	family
TAT_signal	PF10518.9	gi|222481395|ref|YP_002567631.1|	-	0.00022	21.0	0.6	0.00039	20.2	0.6	1.4	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
RuvB_N	PF05496.12	gi|222481395|ref|YP_002567631.1|	-	0.18	11.5	0.0	0.31	10.8	0.0	1.3	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
DDE_Tnp_IS240	PF13610.6	gi|222481396|ref|YP_002567632.1|	-	8.4e-11	42.3	0.2	1.5e-10	41.4	0.2	1.4	1	1	0	1	1	1	1	DDE	domain
DDE_3	PF13358.6	gi|222481396|ref|YP_002567632.1|	-	0.02	14.6	0.1	0.068	12.9	0.0	1.8	2	0	0	2	2	2	0	DDE	superfamily	endonuclease
Transposase_mut	PF00872.18	gi|222481396|ref|YP_002567632.1|	-	0.034	13.0	0.1	0.86	8.4	0.0	2.5	2	1	0	3	3	3	0	Transposase,	Mutator	family
ADH_zinc_N_2	PF13602.6	gi|222481397|ref|YP_002567633.1|	-	5.3e-25	89.0	0.2	1.6e-24	87.4	0.1	1.8	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
ADH_zinc_N	PF00107.26	gi|222481397|ref|YP_002567633.1|	-	8e-20	71.1	0.1	1.4e-19	70.3	0.1	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_N	PF08240.12	gi|222481397|ref|YP_002567633.1|	-	9.8e-12	44.7	0.2	1.3e-09	37.9	0.2	2.5	1	1	1	2	2	2	2	Alcohol	dehydrogenase	GroES-like	domain
NAD_binding_10	PF13460.6	gi|222481397|ref|YP_002567633.1|	-	0.011	15.7	1.4	0.017	15.1	1.4	1.3	1	0	0	1	1	1	0	NAD(P)H-binding
ADH_N_2	PF16884.5	gi|222481397|ref|YP_002567633.1|	-	0.014	15.3	0.1	0.03	14.2	0.1	1.6	1	0	0	1	1	1	0	N-terminal	domain	of	oxidoreductase
adh_short	PF00106.25	gi|222481397|ref|YP_002567633.1|	-	0.052	13.0	0.4	0.092	12.2	0.4	1.4	1	0	0	1	1	1	0	short	chain	dehydrogenase
CoA_transf_3	PF02515.17	gi|222481398|ref|YP_002567634.1|	-	7.5e-121	403.7	0.0	8.5e-121	403.5	0.0	1.0	1	0	0	1	1	1	1	CoA-transferase	family	III
MFS_1	PF07690.16	gi|222481399|ref|YP_002567635.1|	-	1e-30	106.9	55.6	2.1e-22	79.5	23.9	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
IclR	PF01614.18	gi|222481400|ref|YP_002567636.1|	-	2.8e-31	108.0	0.0	1.7e-30	105.5	0.0	2.0	2	0	0	2	2	2	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.10	gi|222481400|ref|YP_002567636.1|	-	3.5e-11	42.7	0.2	6.2e-10	38.7	0.2	2.3	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_5	PF01022.20	gi|222481400|ref|YP_002567636.1|	-	2.3e-05	24.2	0.0	4.8e-05	23.1	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_DeoR	PF08220.12	gi|222481400|ref|YP_002567636.1|	-	4.3e-05	23.2	0.2	0.00011	21.9	0.2	1.6	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_11	PF08279.12	gi|222481400|ref|YP_002567636.1|	-	0.00013	21.8	0.0	0.00028	20.8	0.0	1.5	1	0	0	1	1	1	1	HTH	domain
MarR_2	PF12802.7	gi|222481400|ref|YP_002567636.1|	-	0.00014	21.6	0.1	0.00045	20.0	0.1	1.8	2	0	0	2	2	1	1	MarR	family
MarR	PF01047.22	gi|222481400|ref|YP_002567636.1|	-	0.00035	20.4	0.0	0.00062	19.6	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_34	PF13601.6	gi|222481400|ref|YP_002567636.1|	-	0.00039	20.5	0.0	0.00068	19.8	0.0	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_24	PF13412.6	gi|222481400|ref|YP_002567636.1|	-	0.00055	19.4	0.0	0.00099	18.6	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|222481400|ref|YP_002567636.1|	-	0.00061	19.8	0.1	0.0011	19.0	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|222481400|ref|YP_002567636.1|	-	0.0012	18.7	0.1	0.0099	15.7	0.0	2.3	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
Fe_dep_repress	PF01325.19	gi|222481400|ref|YP_002567636.1|	-	0.0016	18.6	0.1	0.0031	17.7	0.1	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_Crp_2	PF13545.6	gi|222481400|ref|YP_002567636.1|	-	0.0026	17.7	0.1	0.0092	15.9	0.0	1.8	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
HTH_27	PF13463.6	gi|222481400|ref|YP_002567636.1|	-	0.0032	17.9	0.1	0.0071	16.8	0.1	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_10	PF04967.12	gi|222481400|ref|YP_002567636.1|	-	0.0033	17.2	0.0	0.0074	16.1	0.0	1.5	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Sigma70_r4_2	PF08281.12	gi|222481400|ref|YP_002567636.1|	-	0.0055	16.4	0.0	0.012	15.3	0.0	1.5	1	0	0	1	1	1	1	Sigma-70,	region	4
HemN_C	PF06969.16	gi|222481400|ref|YP_002567636.1|	-	0.0094	16.0	0.0	0.02	15.0	0.0	1.5	1	0	0	1	1	1	1	HemN	C-terminal	domain
LexA_DNA_bind	PF01726.16	gi|222481400|ref|YP_002567636.1|	-	0.0099	15.6	0.0	0.031	14.0	0.0	1.8	2	0	0	2	2	1	1	LexA	DNA	binding	domain
HTH_36	PF13730.6	gi|222481400|ref|YP_002567636.1|	-	0.016	15.1	0.0	7.7	6.6	0.0	2.4	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_40	PF14493.6	gi|222481400|ref|YP_002567636.1|	-	0.027	14.9	0.0	0.061	13.8	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
RP-C	PF03428.13	gi|222481400|ref|YP_002567636.1|	-	0.051	13.2	0.0	0.094	12.4	0.0	1.4	1	0	0	1	1	1	0	Replication	protein	C	N-terminal	domain
B-block_TFIIIC	PF04182.12	gi|222481400|ref|YP_002567636.1|	-	0.2	11.9	0.0	0.95	9.7	0.0	2.0	2	0	0	2	2	2	0	B-block	binding	subunit	of	TFIIIC
DprA_WH	PF17782.1	gi|222481400|ref|YP_002567636.1|	-	3	8.0	4.7	1.1	9.4	0.1	2.5	3	0	0	3	3	3	0	DprA	winged	helix	domain
AsnC_trans_reg	PF01037.21	gi|222481402|ref|YP_002567638.1|	-	4.3e-17	61.8	0.2	7.8e-17	61.0	0.2	1.4	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HTH_24	PF13412.6	gi|222481402|ref|YP_002567638.1|	-	1.2e-05	24.8	0.4	0.00011	21.7	0.1	2.2	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|222481402|ref|YP_002567638.1|	-	0.00024	20.9	0.2	0.0023	17.7	0.1	2.2	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|222481402|ref|YP_002567638.1|	-	0.0011	18.9	0.1	0.002	18.0	0.1	1.4	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
DprA_WH	PF17782.1	gi|222481402|ref|YP_002567638.1|	-	0.0014	18.7	0.3	0.0025	17.9	0.3	1.4	1	0	0	1	1	1	1	DprA	winged	helix	domain
Rrf2	PF02082.20	gi|222481402|ref|YP_002567638.1|	-	0.0098	16.2	0.1	0.029	14.7	0.0	1.7	2	0	0	2	2	2	1	Transcriptional	regulator
HTH_27	PF13463.6	gi|222481402|ref|YP_002567638.1|	-	0.026	15.0	0.3	0.093	13.2	0.1	2.0	2	1	0	2	2	2	0	Winged	helix	DNA-binding	domain
TFIIE_alpha	PF02002.17	gi|222481402|ref|YP_002567638.1|	-	0.043	13.7	0.4	0.07	13.0	0.4	1.3	1	0	0	1	1	1	0	TFIIE	alpha	subunit
GYD	PF08734.11	gi|222481402|ref|YP_002567638.1|	-	0.05	13.6	0.3	0.88	9.6	0.0	2.3	2	0	0	2	2	2	0	GYD	domain
HTH_23	PF13384.6	gi|222481402|ref|YP_002567638.1|	-	0.052	13.4	0.0	0.27	11.1	0.0	2.2	3	0	0	3	3	3	0	Homeodomain-like	domain
FeoC	PF09012.10	gi|222481402|ref|YP_002567638.1|	-	0.069	13.2	0.0	0.13	12.4	0.0	1.4	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
MarR_2	PF12802.7	gi|222481402|ref|YP_002567638.1|	-	0.094	12.6	0.1	0.16	11.9	0.1	1.4	1	0	0	1	1	1	0	MarR	family
HTH_IclR	PF09339.10	gi|222481402|ref|YP_002567638.1|	-	0.11	12.3	0.0	0.19	11.6	0.0	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_36	PF13730.6	gi|222481402|ref|YP_002567638.1|	-	0.2	11.6	0.0	0.35	10.9	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
Aminotran_1_2	PF00155.21	gi|222481403|ref|YP_002567639.1|	-	4.6e-62	210.3	0.0	5.2e-62	210.1	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Beta_elim_lyase	PF01212.21	gi|222481403|ref|YP_002567639.1|	-	0.038	13.3	0.0	0.074	12.3	0.0	1.4	1	0	0	1	1	1	0	Beta-eliminating	lyase
T2SSE	PF00437.20	gi|222481404|ref|YP_002567640.1|	-	2.4e-43	148.2	0.0	3.7e-43	147.5	0.0	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_29	PF13555.6	gi|222481404|ref|YP_002567640.1|	-	0.0016	18.1	0.1	0.0034	17.1	0.1	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|222481404|ref|YP_002567640.1|	-	0.21	12.1	2.2	0.39	11.2	0.2	2.2	2	0	0	2	2	2	0	AAA	domain
DDE_Tnp_1	PF01609.21	gi|222481405|ref|YP_002567641.1|	-	1.7e-15	57.3	5.6	6.8e-15	55.3	5.6	1.9	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|222481405|ref|YP_002567641.1|	-	0.00046	20.2	0.6	0.0012	18.8	0.0	2.0	2	0	0	2	2	2	1	Transposase	domain	(DUF772)
DDE_Tnp_1_2	PF13586.6	gi|222481405|ref|YP_002567641.1|	-	0.0071	16.7	1.2	0.013	15.8	0.2	1.9	2	1	0	2	2	2	1	Transposase	DDE	domain
DDE_Tnp_1_6	PF13751.6	gi|222481405|ref|YP_002567641.1|	-	0.021	15.1	0.5	0.06	13.6	0.3	1.9	2	0	0	2	2	2	0	Transposase	DDE	domain
AAA_16	PF13191.6	gi|222481407|ref|YP_002567643.1|	-	1.7e-12	48.0	0.6	5.2e-12	46.5	0.1	2.1	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.29	gi|222481407|ref|YP_002567643.1|	-	1.5e-10	41.6	0.0	8.1e-10	39.2	0.0	2.3	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Cdc6_C	PF09079.11	gi|222481407|ref|YP_002567643.1|	-	1.6e-09	37.6	0.1	6.3e-09	35.7	0.0	2.1	2	0	0	2	2	2	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|222481407|ref|YP_002567643.1|	-	9.1e-06	26.0	0.0	2.2e-05	24.8	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
DUF815	PF05673.13	gi|222481407|ref|YP_002567643.1|	-	3.1e-05	23.3	0.0	6.2e-05	22.3	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
ATPase_2	PF01637.18	gi|222481407|ref|YP_002567643.1|	-	0.00015	21.7	0.0	0.0004	20.4	0.0	1.6	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
TniB	PF05621.11	gi|222481407|ref|YP_002567643.1|	-	0.0024	17.3	0.0	0.015	14.7	0.0	2.1	1	1	0	1	1	1	1	Bacterial	TniB	protein
RNA_helicase	PF00910.22	gi|222481407|ref|YP_002567643.1|	-	0.0045	17.4	0.1	0.028	14.8	0.0	2.4	3	0	0	3	3	2	1	RNA	helicase
Sigma54_activat	PF00158.26	gi|222481407|ref|YP_002567643.1|	-	0.0047	16.7	0.0	0.01	15.6	0.0	1.5	1	0	0	1	1	1	1	Sigma-54	interaction	domain
NACHT	PF05729.12	gi|222481407|ref|YP_002567643.1|	-	0.013	15.4	0.0	0.035	14.0	0.0	1.7	1	1	0	1	1	1	0	NACHT	domain
AAA_25	PF13481.6	gi|222481407|ref|YP_002567643.1|	-	0.014	15.0	1.0	0.059	12.9	0.2	2.4	2	1	0	2	2	2	0	AAA	domain
MMR_HSR1	PF01926.23	gi|222481407|ref|YP_002567643.1|	-	0.016	15.2	0.0	0.036	14.2	0.0	1.7	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
IstB_IS21	PF01695.17	gi|222481407|ref|YP_002567643.1|	-	0.022	14.5	0.0	0.073	12.8	0.0	1.8	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
Sigma54_activ_2	PF14532.6	gi|222481407|ref|YP_002567643.1|	-	0.028	14.5	0.0	0.061	13.4	0.0	1.6	1	0	0	1	1	1	0	Sigma-54	interaction	domain
ABC_tran	PF00005.27	gi|222481407|ref|YP_002567643.1|	-	0.033	14.7	0.0	0.11	13.0	0.0	1.9	1	1	0	1	1	1	0	ABC	transporter
AAA_5	PF07728.14	gi|222481407|ref|YP_002567643.1|	-	0.041	13.9	0.0	0.36	10.8	0.0	2.3	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_7	PF12775.7	gi|222481407|ref|YP_002567643.1|	-	0.059	12.9	0.0	0.13	11.7	0.0	1.6	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
PIF1	PF05970.14	gi|222481407|ref|YP_002567643.1|	-	0.069	12.3	0.0	0.13	11.5	0.0	1.3	1	0	0	1	1	1	0	PIF1-like	helicase
AAA_18	PF13238.6	gi|222481407|ref|YP_002567643.1|	-	0.087	13.4	0.0	0.18	12.3	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_lid_10	PF17872.1	gi|222481407|ref|YP_002567643.1|	-	0.089	12.9	0.0	0.55	10.4	0.0	2.2	2	0	0	2	2	2	0	AAA	lid	domain
NB-ARC	PF00931.22	gi|222481407|ref|YP_002567643.1|	-	0.092	11.9	0.0	1.1	8.4	0.0	2.2	2	1	0	2	2	2	0	NB-ARC	domain
Mg_chelatase	PF01078.21	gi|222481407|ref|YP_002567643.1|	-	0.092	12.1	0.0	0.22	10.9	0.0	1.7	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
EamA	PF00892.20	gi|222481408|ref|YP_002567644.1|	-	1.2e-39	135.6	35.6	6.2e-20	71.8	16.4	2.0	2	0	0	2	2	2	2	EamA-like	transporter	family
HTH_5	PF01022.20	gi|222481409|ref|YP_002567645.1|	-	0.00091	19.1	0.0	0.0011	18.7	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
Trp_repressor	PF01371.19	gi|222481409|ref|YP_002567645.1|	-	0.002	18.2	0.1	0.0022	18.1	0.1	1.1	1	0	0	1	1	1	1	Trp	repressor	protein
HTH_23	PF13384.6	gi|222481409|ref|YP_002567645.1|	-	0.0027	17.5	0.1	0.0032	17.2	0.1	1.1	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_Crp_2	PF13545.6	gi|222481409|ref|YP_002567645.1|	-	0.034	14.1	0.1	0.038	14.0	0.1	1.2	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_37	PF13744.6	gi|222481409|ref|YP_002567645.1|	-	0.06	13.3	0.0	0.067	13.2	0.0	1.0	1	0	0	1	1	1	0	Helix-turn-helix	domain
SHOCT	PF09851.9	gi|222481410|ref|YP_002567646.1|	-	6.5e-08	32.1	5.4	1e-07	31.5	5.4	1.3	1	0	0	1	1	1	1	Short	C-terminal	domain
DUF1707	PF08044.11	gi|222481410|ref|YP_002567646.1|	-	6.8e-05	22.9	2.6	0.00014	21.9	2.2	1.7	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1707)
HemY_N	PF07219.13	gi|222481410|ref|YP_002567646.1|	-	0.0041	17.3	1.0	0.076	13.2	0.1	2.2	2	0	0	2	2	2	1	HemY	protein	N-terminus
DMAP_binding	PF06464.11	gi|222481410|ref|YP_002567646.1|	-	0.0095	16.7	0.3	0.014	16.2	0.3	1.2	1	0	0	1	1	1	1	DMAP1-binding	Domain
DUF4381	PF14316.6	gi|222481410|ref|YP_002567646.1|	-	0.018	15.3	0.4	0.018	15.3	0.4	1.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4381)
GvpG	PF05120.12	gi|222481410|ref|YP_002567646.1|	-	0.059	13.4	0.3	0.1	12.6	0.3	1.4	1	0	0	1	1	1	0	Gas	vesicle	protein	G
CdvA	PF18822.1	gi|222481410|ref|YP_002567646.1|	-	0.12	12.2	0.0	0.18	11.6	0.0	1.2	1	0	0	1	1	1	0	CdvA-like	coiled-coil	domain
DUF2207	PF09972.9	gi|222481410|ref|YP_002567646.1|	-	0.12	11.1	0.3	0.13	11.0	0.3	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
DUF4231	PF14015.6	gi|222481410|ref|YP_002567646.1|	-	0.14	12.7	0.9	0.2	12.2	0.9	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4231)
NikR_C	PF08753.11	gi|222481411|ref|YP_002567647.1|	-	9.7e-17	60.9	0.7	9.7e-17	60.9	0.7	1.5	2	0	0	2	2	2	1	NikR	C	terminal	nickel	binding	domain
RHH_1	PF01402.21	gi|222481411|ref|YP_002567647.1|	-	4.6e-05	23.2	0.0	0.0001	22.1	0.0	1.6	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
VapB_antitoxin	PF09957.9	gi|222481411|ref|YP_002567647.1|	-	0.064	13.2	0.0	0.11	12.5	0.0	1.3	1	0	0	1	1	1	0	Bacterial	antitoxin	of	type	II	TA	system,	VapB
MFS_1	PF07690.16	gi|222481412|ref|YP_002567648.1|	-	6.1e-17	61.6	36.1	2.6e-16	59.5	25.7	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|222481412|ref|YP_002567648.1|	-	0.0006	18.8	1.9	0.0006	18.8	1.9	2.7	1	1	0	2	2	2	1	Sugar	(and	other)	transporter
MFS_1_like	PF12832.7	gi|222481412|ref|YP_002567648.1|	-	0.0011	17.9	3.0	0.0021	17.0	1.7	2.1	1	1	1	2	2	2	1	MFS_1	like	family
LacY_symp	PF01306.19	gi|222481412|ref|YP_002567648.1|	-	0.0031	16.4	12.3	0.013	14.3	4.8	2.8	1	1	1	2	2	2	2	LacY	proton/sugar	symporter
CBS	PF00571.28	gi|222481413|ref|YP_002567649.1|	-	3.5e-37	126.6	11.0	5.2e-11	42.8	0.1	4.3	4	0	0	4	4	4	4	CBS	domain
Ribosomal_S30AE	PF02482.19	gi|222481413|ref|YP_002567649.1|	-	0.14	13.0	0.0	0.27	12.0	0.0	1.5	1	0	0	1	1	1	0	Sigma	54	modulation	protein	/	S30EA	ribosomal	protein
DUF1508	PF07411.12	gi|222481415|ref|YP_002567651.1|	-	6.5e-19	67.5	0.2	1.2e-18	66.6	0.2	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1508)
DUF2807	PF10988.8	gi|222481415|ref|YP_002567651.1|	-	0.095	12.5	0.1	0.14	12.0	0.1	1.5	1	1	0	1	1	1	0	Putative	auto-transporter	adhesin,	head	GIN	domain
Frankia_peptide	PF14407.6	gi|222481416|ref|YP_002567652.1|	-	0.035	14.1	1.6	2.6	8.1	0.2	2.2	2	0	0	2	2	2	0	Ribosomally	synthesized	peptide	prototyped	by	Frankia	Franean1_4349.
PIN_9	PF18477.1	gi|222481417|ref|YP_002567653.1|	-	0.00025	21.4	0.1	0.00038	20.7	0.1	1.3	1	0	0	1	1	1	1	PIN	like	domain
PIN_4	PF13638.6	gi|222481417|ref|YP_002567653.1|	-	0.1	12.9	0.0	0.1	12.9	0.0	1.3	1	1	0	1	1	1	0	PIN	domain
DUF932	PF06067.11	gi|222481417|ref|YP_002567653.1|	-	0.1	12.4	0.0	0.13	12.0	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF932)
DUF2760	PF10816.8	gi|222481417|ref|YP_002567653.1|	-	0.12	12.3	0.1	0.18	11.6	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF2760)
PSK_trans_fac	PF07704.11	gi|222481418|ref|YP_002567654.1|	-	0.0014	19.4	4.6	0.0033	18.1	4.6	1.6	1	1	0	1	1	1	1	Rv0623-like	transcription	factor
RHH_8	PF17723.1	gi|222481418|ref|YP_002567654.1|	-	0.04	14.1	0.2	0.044	14.0	0.2	1.2	1	0	0	1	1	1	0	Ribbon-Helix-Helix	transcriptional	regulator	family
PBP_like_2	PF12849.7	gi|222481419|ref|YP_002567655.1|	-	2.8e-20	73.1	3.8	6.3e-20	72.0	2.2	2.3	1	1	1	2	2	2	1	PBP	superfamily	domain
PBP_like	PF12727.7	gi|222481419|ref|YP_002567655.1|	-	1.1e-11	44.2	0.1	1.8e-11	43.5	0.1	1.3	1	0	0	1	1	1	1	PBP	superfamily	domain
BPD_transp_1	PF00528.22	gi|222481420|ref|YP_002567656.1|	-	1.4e-17	64.0	13.5	1.4e-17	64.0	13.5	2.7	2	1	1	3	3	3	3	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|222481421|ref|YP_002567657.1|	-	3.3e-19	69.3	15.7	3.3e-19	69.3	15.7	4.7	1	1	0	3	3	3	1	Binding-protein-dependent	transport	system	inner	membrane	component
TNFR_16_TM	PF18422.1	gi|222481421|ref|YP_002567657.1|	-	1.5	8.9	4.8	7.7	6.6	4.8	2.2	1	0	0	1	1	1	0	Tumor	necrosis	factor	receptor	member	16	trans-membrane	domain
ABC_tran	PF00005.27	gi|222481422|ref|YP_002567658.1|	-	2.1e-30	106.0	0.0	3.6e-30	105.2	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|222481422|ref|YP_002567658.1|	-	3.5e-12	46.8	0.0	1.4e-05	25.0	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|222481422|ref|YP_002567658.1|	-	1.9e-08	34.0	0.1	9.2e-07	28.5	0.1	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.6	gi|222481422|ref|YP_002567658.1|	-	1.3e-06	28.4	0.0	4e-05	23.5	0.0	2.1	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|222481422|ref|YP_002567658.1|	-	0.00034	20.3	0.0	0.00072	19.3	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.6	gi|222481422|ref|YP_002567658.1|	-	0.00041	20.6	0.0	0.0011	19.3	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|222481422|ref|YP_002567658.1|	-	0.00066	20.1	0.1	0.0015	18.9	0.1	1.8	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_25	PF13481.6	gi|222481422|ref|YP_002567658.1|	-	0.0013	18.4	0.3	0.025	14.1	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_23	PF13476.6	gi|222481422|ref|YP_002567658.1|	-	0.0013	19.2	0.0	0.0031	18.0	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|222481422|ref|YP_002567658.1|	-	0.0014	18.5	0.0	0.0033	17.3	0.0	1.6	2	0	0	2	2	2	1	RsgA	GTPase
Rad17	PF03215.15	gi|222481422|ref|YP_002567658.1|	-	0.0066	16.4	0.0	0.01	15.8	0.0	1.3	1	0	0	1	1	1	1	Rad17	P-loop	domain
DeoRC	PF00455.22	gi|222481422|ref|YP_002567658.1|	-	0.0067	16.4	0.0	0.012	15.6	0.0	1.3	1	0	0	1	1	1	1	DeoR	C	terminal	sensor	domain
AAA_30	PF13604.6	gi|222481422|ref|YP_002567658.1|	-	0.041	13.6	0.0	1.2	8.8	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_18	PF13238.6	gi|222481422|ref|YP_002567658.1|	-	0.047	14.2	0.0	0.17	12.4	0.0	2.0	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.6	gi|222481422|ref|YP_002567658.1|	-	0.052	13.7	0.0	0.15	12.2	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
DUF228	PF02989.14	gi|222481422|ref|YP_002567658.1|	-	0.062	13.1	0.0	0.13	12.1	0.0	1.5	1	0	0	1	1	1	0	Lyme	disease	proteins	of	unknown	function
PRK	PF00485.18	gi|222481422|ref|YP_002567658.1|	-	0.11	12.3	0.0	0.19	11.4	0.0	1.4	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
AAA	PF00004.29	gi|222481422|ref|YP_002567658.1|	-	0.13	12.6	0.0	0.74	10.2	0.0	2.1	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
PhoU	PF01895.19	gi|222481423|ref|YP_002567659.1|	-	3.1e-39	133.3	11.7	1.2e-21	77.0	1.8	2.1	2	0	0	2	2	2	2	PhoU	domain
MazE_antitoxin	PF04014.18	gi|222481424|ref|YP_002567660.1|	-	0.00022	21.1	0.0	0.0004	20.2	0.0	1.4	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
HOOK	PF05622.12	gi|222481425|ref|YP_002567661.1|	-	0.007	14.6	2.7	0.0098	14.1	2.7	1.2	1	0	0	1	1	1	1	HOOK	protein
LPP	PF04728.13	gi|222481425|ref|YP_002567661.1|	-	0.025	15.0	1.0	0.32	11.4	0.1	2.7	2	0	0	2	2	2	0	Lipoprotein	leucine-zipper
Laminin_II	PF06009.12	gi|222481425|ref|YP_002567661.1|	-	0.051	13.6	5.1	1.6	8.7	0.2	2.5	1	1	1	2	2	2	0	Laminin	Domain	II
Spc7	PF08317.11	gi|222481425|ref|YP_002567661.1|	-	0.052	12.4	3.0	0.068	12.1	1.3	2.0	1	1	1	2	2	2	0	Spc7	kinetochore	protein
DUF1664	PF07889.12	gi|222481425|ref|YP_002567661.1|	-	0.098	12.7	5.7	0.47	10.5	0.9	3.0	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF1664)
Fez1	PF06818.15	gi|222481425|ref|YP_002567661.1|	-	0.12	12.9	1.9	0.11	13.0	0.7	1.6	2	0	0	2	2	2	0	Fez1
Baculo_PEP_C	PF04513.12	gi|222481425|ref|YP_002567661.1|	-	0.12	12.4	2.7	0.58	10.2	0.5	2.9	2	1	2	4	4	4	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
BLOC1_2	PF10046.9	gi|222481425|ref|YP_002567661.1|	-	0.12	12.7	3.5	8.8	6.7	0.2	3.4	2	1	2	4	4	4	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
T2SSF	PF00482.23	gi|222481425|ref|YP_002567661.1|	-	0.16	11.9	1.4	10	6.1	0.2	2.6	1	1	1	2	2	2	0	Type	II	secretion	system	(T2SS),	protein	F
NPV_P10	PF05531.12	gi|222481425|ref|YP_002567661.1|	-	0.18	12.3	9.9	1.7	9.2	1.1	4.0	2	1	2	4	4	4	0	Nucleopolyhedrovirus	P10	protein
COG2	PF06148.11	gi|222481425|ref|YP_002567661.1|	-	0.25	11.4	4.5	4.9	7.2	0.0	3.6	1	1	0	3	3	3	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
CorA	PF01544.18	gi|222481425|ref|YP_002567661.1|	-	0.31	10.3	6.2	0.64	9.3	6.0	1.6	1	1	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
FlaC_arch	PF05377.11	gi|222481425|ref|YP_002567661.1|	-	0.47	10.9	3.6	6	7.3	0.0	3.8	4	1	1	5	5	3	0	Flagella	accessory	protein	C	(FlaC)
Prefoldin_2	PF01920.20	gi|222481425|ref|YP_002567661.1|	-	0.8	9.7	2.9	23	5.0	0.0	3.5	3	1	0	3	3	3	0	Prefoldin	subunit
DUF948	PF06103.11	gi|222481425|ref|YP_002567661.1|	-	0.84	9.9	9.8	7.9	6.8	1.9	3.3	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
Rx_N	PF18052.1	gi|222481425|ref|YP_002567661.1|	-	1.3	9.3	10.8	0.096	13.0	2.0	3.0	2	1	1	3	3	3	0	Rx	N-terminal	domain
LMWPc	PF01451.21	gi|222481426|ref|YP_002567662.1|	-	2.7e-18	66.7	0.0	3.6e-18	66.3	0.0	1.2	1	0	0	1	1	1	1	Low	molecular	weight	phosphotyrosine	protein	phosphatase
RMMBL	PF07521.12	gi|222481427|ref|YP_002567663.1|	-	0.065	13.2	0.0	0.15	12.0	0.0	1.6	1	0	0	1	1	1	0	Zn-dependent	metallo-hydrolase	RNA	specificity	domain
CoA_transf_3	PF02515.17	gi|222481427|ref|YP_002567663.1|	-	0.082	12.0	0.6	0.12	11.4	0.6	1.2	1	0	0	1	1	1	0	CoA-transferase	family	III
AAA_14	PF13173.6	gi|222481428|ref|YP_002567664.1|	-	1.8e-07	31.2	0.0	4.9e-07	29.9	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
ATPase_2	PF01637.18	gi|222481428|ref|YP_002567664.1|	-	0.00016	21.7	0.0	0.00029	20.8	0.0	1.5	1	0	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA_16	PF13191.6	gi|222481428|ref|YP_002567664.1|	-	0.00016	22.1	1.3	0.0013	19.2	0.1	2.7	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_24	PF13479.6	gi|222481428|ref|YP_002567664.1|	-	0.00039	20.2	0.0	0.001	18.8	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|222481428|ref|YP_002567664.1|	-	0.00062	20.0	0.0	0.0028	17.9	0.0	2.1	1	1	0	1	1	1	1	AAA	domain
IstB_IS21	PF01695.17	gi|222481428|ref|YP_002567664.1|	-	0.0033	17.2	0.0	0.32	10.7	0.0	2.4	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
AAA_23	PF13476.6	gi|222481428|ref|YP_002567664.1|	-	0.022	15.2	0.0	0.053	14.0	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
RNA_helicase	PF00910.22	gi|222481428|ref|YP_002567664.1|	-	0.022	15.1	0.0	0.056	13.8	0.0	1.7	1	0	0	1	1	1	0	RNA	helicase
NACHT	PF05729.12	gi|222481428|ref|YP_002567664.1|	-	0.023	14.6	0.0	0.043	13.7	0.0	1.6	1	1	0	1	1	1	0	NACHT	domain
NB-ARC	PF00931.22	gi|222481428|ref|YP_002567664.1|	-	0.034	13.3	0.0	0.072	12.3	0.0	1.5	1	0	0	1	1	1	0	NB-ARC	domain
AAA	PF00004.29	gi|222481428|ref|YP_002567664.1|	-	0.071	13.5	0.0	0.19	12.2	0.0	1.6	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
ABC_tran	PF00005.27	gi|222481428|ref|YP_002567664.1|	-	0.085	13.4	0.0	0.18	12.3	0.0	1.7	1	1	0	1	1	1	0	ABC	transporter
Sigma70_r4_2	PF08281.12	gi|222481428|ref|YP_002567664.1|	-	0.09	12.5	0.0	0.9	9.3	0.0	2.4	2	0	0	2	2	2	0	Sigma-70,	region	4
AAA_25	PF13481.6	gi|222481428|ref|YP_002567664.1|	-	0.1	12.2	0.0	0.21	11.1	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
DAP3	PF10236.9	gi|222481428|ref|YP_002567664.1|	-	0.15	11.2	0.0	0.36	9.9	0.0	1.6	2	0	0	2	2	2	0	Mitochondrial	ribosomal	death-associated	protein	3
ATPase	PF06745.13	gi|222481428|ref|YP_002567664.1|	-	0.18	11.1	0.0	0.62	9.4	0.0	1.8	1	1	0	1	1	1	0	KaiC
DDE_Tnp_1	PF01609.21	gi|222481430|ref|YP_002567666.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
FliG_C	PF01706.16	gi|222481431|ref|YP_002567667.1|	-	0.023	14.9	0.7	0.047	13.9	0.7	1.6	1	1	0	1	1	1	0	FliG	C-terminal	domain
HTH_13	PF11972.8	gi|222481431|ref|YP_002567667.1|	-	0.092	12.8	0.0	0.18	11.9	0.0	1.5	1	0	0	1	1	1	0	HTH	DNA	binding	domain
Big_1	PF02369.16	gi|222481432|ref|YP_002567668.1|	-	0.035	14.1	0.0	2	8.4	0.0	2.0	2	0	0	2	2	2	0	Bacterial	Ig-like	domain	(group	1)
MazE_antitoxin	PF04014.18	gi|222481432|ref|YP_002567668.1|	-	0.058	13.3	0.2	0.21	11.6	0.2	1.8	1	1	0	1	1	1	0	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
Resolvase	PF00239.21	gi|222481433|ref|YP_002567669.1|	-	2.4e-07	31.0	1.1	4.7e-07	30.0	1.1	1.5	1	1	0	1	1	1	1	Resolvase,	N	terminal	domain
Sigma70_r4_2	PF08281.12	gi|222481433|ref|YP_002567669.1|	-	0.026	14.2	0.0	0.16	11.6	0.0	2.1	2	0	0	2	2	2	0	Sigma-70,	region	4
DDE_Tnp_1	PF01609.21	gi|222481435|ref|YP_002567671.1|	-	6.9e-33	114.1	0.3	9e-33	113.7	0.3	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_4	PF13701.6	gi|222481435|ref|YP_002567671.1|	-	0.0083	14.4	0.1	0.028	12.7	0.0	1.7	1	1	1	2	2	2	1	Transposase	DDE	domain	group	1
Corona_3	PF04694.12	gi|222481435|ref|YP_002567671.1|	-	0.043	14.2	0.0	0.11	12.9	0.0	1.6	1	0	0	1	1	1	0	Coronavirus	ORF3	protein
HNH	PF01844.23	gi|222481436|ref|YP_002567672.1|	-	3.1e-11	43.2	5.5	7.1e-11	42.1	5.5	1.6	1	0	0	1	1	1	1	HNH	endonuclease
HNH_5	PF14279.6	gi|222481436|ref|YP_002567672.1|	-	1.7e-05	24.6	4.8	0.00014	21.7	4.6	2.4	1	1	1	2	2	2	1	HNH	endonuclease
Cytochrome_C7	PF14522.6	gi|222481436|ref|YP_002567672.1|	-	0.089	12.8	5.6	0.15	12.1	5.6	1.3	1	0	0	1	1	1	0	Cytochrome	c7	and	related	cytochrome	c
Zn_ribbon_SprT	PF17283.2	gi|222481436|ref|YP_002567672.1|	-	0.26	11.2	6.7	0.14	12.1	3.1	2.2	2	0	0	2	2	2	0	SprT-like	zinc	ribbon	domain
Zn-ribbon_8	PF09723.10	gi|222481436|ref|YP_002567672.1|	-	4.8	7.4	5.1	72	3.6	5.1	2.2	1	1	0	1	1	1	0	Zinc	ribbon	domain
DDE_Tnp_1	PF01609.21	gi|222481437|ref|YP_002567673.1|	-	6.9e-33	114.1	0.3	9e-33	113.7	0.3	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_4	PF13701.6	gi|222481437|ref|YP_002567673.1|	-	0.0083	14.4	0.1	0.028	12.7	0.0	1.7	1	1	1	2	2	2	1	Transposase	DDE	domain	group	1
Corona_3	PF04694.12	gi|222481437|ref|YP_002567673.1|	-	0.043	14.2	0.0	0.11	12.9	0.0	1.6	1	0	0	1	1	1	0	Coronavirus	ORF3	protein
N6_Mtase	PF02384.16	gi|222481438|ref|YP_002567674.1|	-	0.00053	19.4	0.0	2.1	7.6	0.0	4.0	4	1	0	4	4	4	2	N-6	DNA	Methylase
Eco57I	PF07669.11	gi|222481438|ref|YP_002567674.1|	-	0.00077	19.9	0.0	0.63	10.6	0.0	2.3	2	0	0	2	2	2	2	Eco57I	restriction-modification	methylase
UPF0236	PF06782.11	gi|222481439|ref|YP_002567675.1|	-	9.7e-06	24.5	0.0	0.00026	19.8	0.0	2.1	2	0	0	2	2	2	2	Uncharacterised	protein	family	(UPF0236)
Transposase_mut	PF00872.18	gi|222481439|ref|YP_002567675.1|	-	0.00037	19.4	0.2	1	8.1	0.0	2.9	2	2	0	2	2	2	2	Transposase,	Mutator	family
CRISPR_Cas6	PF10040.9	gi|222481440|ref|YP_002567676.1|	-	4.3e-15	56.1	0.0	7.4e-15	55.4	0.0	1.4	1	0	0	1	1	1	1	CRISPR-associated	endoribonuclease	Cas6
Csc2	PF18320.1	gi|222481442|ref|YP_002567678.1|	-	2.8e-40	138.1	0.1	1.2e-39	136.1	0.0	1.8	1	1	0	1	1	1	1	Csc2	Crispr
Phage_gp49_66	PF13876.6	gi|222481442|ref|YP_002567678.1|	-	0.18	12.2	0.1	0.6	10.5	0.0	1.9	2	0	0	2	2	2	0	Phage	protein	(N4	Gp49/phage	Sf6	gene	66)	family
DEAD	PF00270.29	gi|222481444|ref|YP_002567680.1|	-	1.6e-12	47.6	0.0	4.3e-12	46.1	0.0	1.7	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
ResIII	PF04851.15	gi|222481444|ref|YP_002567680.1|	-	4.5e-05	23.5	0.0	8.5e-05	22.6	0.0	1.5	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
Ead_Ea22	PF13935.6	gi|222481444|ref|YP_002567680.1|	-	0.05	14.3	0.5	0.12	13.0	0.1	1.9	2	0	0	2	2	2	0	Ead/Ea22-like	protein
Cas_Cas4	PF01930.17	gi|222481445|ref|YP_002567681.1|	-	5.7e-25	88.3	0.0	6.4e-25	88.1	0.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF83
PDDEXK_1	PF12705.7	gi|222481445|ref|YP_002567681.1|	-	8.6e-10	38.9	3.7	9.5e-08	32.3	0.1	2.0	1	1	1	2	2	2	2	PD-(D/E)XK	nuclease	superfamily
Csa1	PF06023.12	gi|222481445|ref|YP_002567681.1|	-	0.00014	21.3	0.0	0.00019	20.9	0.0	1.2	1	0	0	1	1	1	1	CRISPR-associated	exonuclease	Csa1
Cas_Cas1	PF01867.16	gi|222481446|ref|YP_002567682.1|	-	9.4e-76	254.6	0.0	1.1e-75	254.4	0.0	1.1	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas1
Hydrolase_like	PF13242.6	gi|222481446|ref|YP_002567682.1|	-	0.1	12.7	0.2	0.27	11.3	0.2	1.7	1	0	0	1	1	1	0	HAD-hyrolase-like
CRISPR_Cas2	PF09827.9	gi|222481447|ref|YP_002567683.1|	-	2.4e-20	72.5	0.3	2.9e-20	72.2	0.3	1.0	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas2
Sortase	PF04203.13	gi|222481447|ref|YP_002567683.1|	-	0.1	12.4	0.1	0.12	12.2	0.1	1.2	1	0	0	1	1	1	0	Sortase	domain
Hairy_orange	PF07527.13	gi|222481449|ref|YP_002567685.1|	-	0.0044	17.2	0.2	4.4	7.6	0.0	2.7	2	0	0	2	2	2	2	Hairy	Orange
MutS_IV	PF05190.18	gi|222481449|ref|YP_002567685.1|	-	0.24	11.8	0.0	1.1	9.6	0.0	2.1	2	0	0	2	2	2	0	MutS	family	domain	IV
PIN	PF01850.21	gi|222481453|ref|YP_002567689.1|	-	7.3e-12	45.9	0.1	8.2e-12	45.7	0.1	1.0	1	0	0	1	1	1	1	PIN	domain
PIN_3	PF13470.6	gi|222481453|ref|YP_002567689.1|	-	0.0071	17.1	0.1	0.0087	16.8	0.1	1.2	1	0	0	1	1	1	1	PIN	domain
S_4TM	PF18159.1	gi|222481453|ref|YP_002567689.1|	-	0.036	13.4	0.0	0.045	13.0	0.0	1.1	1	0	0	1	1	1	0	SMODS-associating	4TM	effector	domain
VAPB_antitox	PF02697.14	gi|222481454|ref|YP_002567690.1|	-	8.7e-18	64.9	2.2	1.1e-17	64.6	2.2	1.1	1	0	0	1	1	1	1	Putative	antitoxin
Phage_integrase	PF00589.22	gi|222481456|ref|YP_002567692.1|	-	1.5e-23	83.5	0.0	1.7e-23	83.3	0.0	1.0	1	0	0	1	1	1	1	Phage	integrase	family
Pilin_N	PF07790.11	gi|222481457|ref|YP_002567693.1|	-	2.5e-20	73.2	0.4	7e-20	71.7	0.3	1.7	2	0	0	2	2	2	1	Archaeal	Type	IV	pilin,	N-terminal
DUF2154	PF09922.9	gi|222481457|ref|YP_002567693.1|	-	0.043	13.7	0.1	0.47	10.3	0.0	2.1	2	0	0	2	2	2	0	Cell	wall-active	antibiotics	response	4TMS	YvqF
DDE_Tnp_1	PF01609.21	gi|222481458|ref|YP_002567694.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
Glycos_transf_1	PF00534.20	gi|222481459|ref|YP_002567695.1|	-	1.1e-20	73.9	0.0	2.9e-20	72.5	0.0	1.6	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|222481459|ref|YP_002567695.1|	-	8e-19	68.4	0.0	1.1e-18	67.9	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|222481459|ref|YP_002567695.1|	-	7e-06	26.1	0.1	1.2e-05	25.4	0.1	1.4	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_1_2	PF13524.6	gi|222481459|ref|YP_002567695.1|	-	0.002	18.5	0.0	0.0046	17.3	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.6	gi|222481459|ref|YP_002567695.1|	-	0.059	13.8	0.5	0.14	12.6	0.1	1.9	2	1	1	3	3	3	0	Glycosyl	transferase	4-like	domain
Sulfatase	PF00884.23	gi|222481460|ref|YP_002567696.1|	-	2.6e-47	161.7	0.9	3.3e-47	161.4	0.9	1.1	1	0	0	1	1	1	1	Sulfatase
DUF4976	PF16347.5	gi|222481460|ref|YP_002567696.1|	-	3.9e-06	27.1	0.2	2.7e-05	24.4	0.1	2.2	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4976)
DUF4994	PF16385.5	gi|222481460|ref|YP_002567696.1|	-	9.5e-06	25.5	0.7	0.003	17.4	0.7	2.5	1	1	0	1	1	1	1	Domain	of	unknown	function
Sulfatase_C	PF14707.6	gi|222481460|ref|YP_002567696.1|	-	0.0015	19.3	0.4	0.0062	17.3	0.4	2.0	1	1	1	2	2	2	1	C-terminal	region	of	aryl-sulfatase
Glyco_trans_1_4	PF13692.6	gi|222481461|ref|YP_002567697.1|	-	2e-09	38.0	0.0	5.6e-09	36.5	0.0	1.7	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glycos_transf_1	PF00534.20	gi|222481461|ref|YP_002567697.1|	-	0.00064	19.3	0.0	0.0013	18.3	0.0	1.5	1	1	0	1	1	1	1	Glycosyl	transferases	group	1
B12-binding	PF02310.19	gi|222481461|ref|YP_002567697.1|	-	0.028	14.5	0.0	1.7	8.7	0.0	2.6	2	0	0	2	2	2	0	B12	binding	domain
DDE_Tnp_1	PF01609.21	gi|222481463|ref|YP_002567699.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
HalOD1	PF18545.1	gi|222481464|ref|YP_002567700.1|	-	1.5e-17	63.6	0.1	1.6e-17	63.5	0.1	1.0	1	0	0	1	1	1	1	Halobacterial	output	domain	1
PAS_9	PF13426.7	gi|222481465|ref|YP_002567701.1|	-	5e-45	152.0	0.2	6.6e-20	71.3	0.0	3.4	3	0	0	3	3	3	3	PAS	domain
PAS	PF00989.25	gi|222481465|ref|YP_002567701.1|	-	9.9e-32	109.3	0.0	5.4e-15	55.4	0.0	3.4	3	0	0	3	3	3	3	PAS	fold
PAS_4	PF08448.10	gi|222481465|ref|YP_002567701.1|	-	2.1e-26	92.3	0.0	1.4e-11	44.6	0.0	3.5	3	0	0	3	3	3	3	PAS	fold
PAS_3	PF08447.12	gi|222481465|ref|YP_002567701.1|	-	1.1e-24	86.5	0.0	9.6e-12	45.0	0.0	3.5	3	0	0	3	3	3	3	PAS	fold
PAS_8	PF13188.7	gi|222481465|ref|YP_002567701.1|	-	2.6e-16	59.2	0.0	0.00058	19.8	0.0	3.7	3	0	0	3	3	3	3	PAS	domain
HATPase_c	PF02518.26	gi|222481465|ref|YP_002567701.1|	-	1.2e-12	48.3	0.0	3.1e-12	47.0	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.6	gi|222481465|ref|YP_002567701.1|	-	3.8e-10	39.8	0.1	1.4e-09	38.0	0.0	2.1	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
HisKA	PF00512.25	gi|222481465|ref|YP_002567701.1|	-	5.6e-05	23.1	0.3	0.00012	22.0	0.3	1.6	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
HisKA_4TM	PF16926.5	gi|222481465|ref|YP_002567701.1|	-	0.0021	17.7	0.1	0.0034	17.0	0.1	1.3	1	0	0	1	1	1	1	Archaeal	4TM	region	of	histidine	kinase
PAS_12	PF18095.1	gi|222481465|ref|YP_002567701.1|	-	0.0037	16.9	0.0	1.1	8.9	0.0	2.6	3	0	0	3	3	3	1	UPF0242	C-terminal	PAS-like	domain
HATPase_c_3	PF13589.6	gi|222481465|ref|YP_002567701.1|	-	0.035	13.9	0.0	0.1	12.4	0.0	1.8	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
DDE_Tnp_1	PF01609.21	gi|222481467|ref|YP_002567703.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
Phage_integrase	PF00589.22	gi|222481468|ref|YP_002567704.1|	-	4.2e-10	39.7	0.0	5.6e-10	39.3	0.0	1.0	1	0	0	1	1	1	1	Phage	integrase	family
MvaI_BcnI	PF15515.6	gi|222481470|ref|YP_002567706.1|	-	3.2e-40	138.4	0.0	3.8e-40	138.1	0.0	1.0	1	0	0	1	1	1	1	MvaI/BcnI	restriction	endonuclease	family
RE_LlaMI	PF09562.10	gi|222481470|ref|YP_002567706.1|	-	0.12	11.9	0.0	9.2	5.8	0.0	2.1	2	0	0	2	2	2	0	LlaMI	restriction	endonuclease
N6_N4_Mtase	PF01555.18	gi|222481471|ref|YP_002567707.1|	-	1.2e-09	38.2	0.0	5e-06	26.4	0.0	2.3	2	0	0	2	2	2	2	DNA	methylase
MethyltransfD12	PF02086.15	gi|222481471|ref|YP_002567707.1|	-	7.8e-08	32.3	0.2	3.1e-07	30.3	0.2	1.9	1	1	0	1	1	1	1	D12	class	N6	adenine-specific	DNA	methyltransferase
UPF0020	PF01170.18	gi|222481471|ref|YP_002567707.1|	-	3e-06	27.1	0.0	0.0008	19.1	0.0	2.2	2	0	0	2	2	2	2	Putative	RNA	methylase	family	UPF0020
Cons_hypoth95	PF03602.15	gi|222481471|ref|YP_002567707.1|	-	0.19	11.4	0.1	9	5.9	0.0	2.2	2	0	0	2	2	2	0	Conserved	hypothetical	protein	95
HATPase_c	PF02518.26	gi|222481472|ref|YP_002567708.1|	-	9.2e-14	51.9	0.0	1.4e-11	44.8	0.0	3.0	3	0	0	3	3	3	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS	PF00989.25	gi|222481472|ref|YP_002567708.1|	-	2.5e-10	40.4	0.1	3e-09	36.9	0.0	2.3	2	0	0	2	2	2	1	PAS	fold
PAS_4	PF08448.10	gi|222481472|ref|YP_002567708.1|	-	6.2e-09	36.1	0.8	1.8e-08	34.6	0.0	2.2	3	0	0	3	3	3	1	PAS	fold
PAS_9	PF13426.7	gi|222481472|ref|YP_002567708.1|	-	2.4e-07	30.9	0.0	6e-07	29.7	0.0	1.6	1	0	0	1	1	1	1	PAS	domain
HisKA	PF00512.25	gi|222481472|ref|YP_002567708.1|	-	1.1e-06	28.5	0.5	1.1e-06	28.5	0.5	2.4	2	1	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_2	PF13581.6	gi|222481472|ref|YP_002567708.1|	-	3.5e-05	23.7	0.0	7.1e-05	22.8	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
PAS_3	PF08447.12	gi|222481472|ref|YP_002567708.1|	-	4.5e-05	23.6	0.0	0.0001	22.5	0.0	1.6	1	0	0	1	1	1	1	PAS	fold
PAS_8	PF13188.7	gi|222481472|ref|YP_002567708.1|	-	0.00029	20.8	0.0	0.00095	19.1	0.0	1.9	1	0	0	1	1	1	1	PAS	domain
GAF_2	PF13185.6	gi|222481472|ref|YP_002567708.1|	-	0.00043	20.6	0.0	0.0012	19.1	0.0	1.8	1	0	0	1	1	1	1	GAF	domain
HATPase_c_3	PF13589.6	gi|222481472|ref|YP_002567708.1|	-	0.00072	19.4	0.0	0.0019	18.1	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA_4TM	PF16926.5	gi|222481472|ref|YP_002567708.1|	-	0.0054	16.3	0.1	0.015	14.9	0.1	1.8	1	0	0	1	1	1	1	Archaeal	4TM	region	of	histidine	kinase
GAF_3	PF13492.6	gi|222481472|ref|YP_002567708.1|	-	0.011	16.1	0.0	0.027	14.8	0.0	1.7	1	0	0	1	1	1	0	GAF	domain
DUF1664	PF07889.12	gi|222481472|ref|YP_002567708.1|	-	0.3	11.1	1.3	0.98	9.5	0.1	2.3	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1664)
Jnk-SapK_ap_N	PF09744.9	gi|222481472|ref|YP_002567708.1|	-	2.8	8.2	8.6	16	5.7	3.2	2.4	2	0	0	2	2	2	0	JNK_SAPK-associated	protein-1
HATPase_c	PF02518.26	gi|222481473|ref|YP_002567709.1|	-	5.4e-21	75.2	0.1	9.9e-21	74.4	0.1	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA_7TM	PF16927.5	gi|222481473|ref|YP_002567709.1|	-	2.2e-16	60.5	22.2	3.3e-16	60.0	22.2	1.2	1	0	0	1	1	1	1	N-terminal	7TM	region	of	histidine	kinase
HisKA	PF00512.25	gi|222481473|ref|YP_002567709.1|	-	4.4e-12	45.9	0.2	1.6e-11	44.0	0.2	2.1	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_8	PF13188.7	gi|222481473|ref|YP_002567709.1|	-	6.1e-06	26.1	0.4	0.011	15.7	0.0	2.9	2	0	0	2	2	2	2	PAS	domain
PAS_10	PF13596.6	gi|222481473|ref|YP_002567709.1|	-	0.0014	19.2	0.0	0.0031	18.1	0.0	1.6	1	0	0	1	1	1	1	PAS	domain
HATPase_c_2	PF13581.6	gi|222481473|ref|YP_002567709.1|	-	0.0052	16.8	0.1	0.013	15.5	0.1	1.7	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HATPase_c_5	PF14501.6	gi|222481473|ref|YP_002567709.1|	-	0.061	13.2	0.0	0.28	11.1	0.0	2.0	1	1	0	1	1	1	0	GHKL	domain
HATPase_c_3	PF13589.6	gi|222481473|ref|YP_002567709.1|	-	0.1	12.5	0.1	0.26	11.1	0.1	1.8	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS	PF00989.25	gi|222481473|ref|YP_002567709.1|	-	0.11	12.5	0.0	0.31	11.1	0.0	1.7	1	0	0	1	1	1	0	PAS	fold
MASE5	PF17178.4	gi|222481473|ref|YP_002567709.1|	-	0.99	9.2	5.1	0.75	9.6	1.7	2.3	2	1	0	2	2	2	0	Membrane-associated	sensor
Pox_VLTF3	PF04947.14	gi|222481474|ref|YP_002567710.1|	-	0.0069	16.1	0.2	0.0087	15.8	0.2	1.2	1	0	0	1	1	1	1	Poxvirus	Late	Transcription	Factor	VLTF3	like
PG_binding_4	PF12229.8	gi|222481474|ref|YP_002567710.1|	-	0.027	14.8	0.3	0.034	14.4	0.3	1.0	1	0	0	1	1	1	0	Putative	peptidoglycan	binding	domain
DUF4256	PF14066.6	gi|222481474|ref|YP_002567710.1|	-	0.056	13.1	0.2	0.056	13.1	0.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4256)
EnY2	PF10163.9	gi|222481474|ref|YP_002567710.1|	-	0.061	13.7	1.5	0.1	13.0	1.5	1.4	1	1	0	1	1	1	0	Transcription	factor	e(y)2
PIN_2	PF10130.9	gi|222481475|ref|YP_002567711.1|	-	2.2e-34	118.5	0.5	2.5e-34	118.4	0.5	1.0	1	0	0	1	1	1	1	PIN	domain
PIN_3	PF13470.6	gi|222481475|ref|YP_002567711.1|	-	8e-06	26.6	0.8	1.1e-05	26.2	0.8	1.2	1	0	0	1	1	1	1	PIN	domain
PIN	PF01850.21	gi|222481475|ref|YP_002567711.1|	-	0.0011	19.4	1.6	0.0019	18.7	1.6	1.3	1	1	0	1	1	1	1	PIN	domain
PIN_12	PF16289.5	gi|222481475|ref|YP_002567711.1|	-	0.043	14.3	0.0	0.056	13.9	0.0	1.2	1	0	0	1	1	1	0	PIN	domain
HTH_IclR	PF09339.10	gi|222481476|ref|YP_002567712.1|	-	0.00085	19.1	0.0	0.39	10.5	0.0	2.9	2	0	0	2	2	2	2	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|222481476|ref|YP_002567712.1|	-	0.007	16.2	0.3	0.43	10.5	0.0	3.1	3	0	0	3	3	3	1	MarR	family
HTH_24	PF13412.6	gi|222481476|ref|YP_002567712.1|	-	0.052	13.1	0.0	3.8	7.2	0.0	2.6	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
DUF2800	PF10926.8	gi|222481478|ref|YP_002567714.1|	-	0.00051	19.4	0.0	0.00088	18.6	0.0	1.3	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF2800)
HalX	PF08663.10	gi|222481478|ref|YP_002567714.1|	-	0.041	14.2	5.5	0.041	14.2	5.5	2.3	2	0	0	2	2	2	0	HalX	domain
ABC_tran_CTD	PF16326.5	gi|222481478|ref|YP_002567714.1|	-	0.14	12.4	3.8	0.75	10.1	3.8	2.2	1	1	0	1	1	1	0	ABC	transporter	C-terminal	domain
DivIC	PF04977.15	gi|222481478|ref|YP_002567714.1|	-	0.29	10.9	2.5	0.52	10.1	1.2	2.2	2	0	0	2	2	2	0	Septum	formation	initiator
DDE_5	PF13546.6	gi|222481481|ref|YP_002567717.1|	-	2.5e-76	256.6	0.0	3.9e-76	256.0	0.0	1.3	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_Tnp_1	PF01609.21	gi|222481481|ref|YP_002567717.1|	-	1.2e-05	25.1	0.3	4.8e-05	23.1	0.3	1.9	1	1	0	1	1	1	1	Transposase	DDE	domain
Sigma70_r4_2	PF08281.12	gi|222481482|ref|YP_002567718.1|	-	8.3e-06	25.4	0.5	5.4e-05	22.8	0.1	2.1	2	1	0	2	2	2	1	Sigma-70,	region	4
HTH_Mga	PF08280.11	gi|222481482|ref|YP_002567718.1|	-	3.5e-05	23.7	0.0	5.8e-05	23.0	0.0	1.5	1	0	0	1	1	1	1	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
HTH_24	PF13412.6	gi|222481482|ref|YP_002567718.1|	-	4e-05	23.1	0.1	6.4e-05	22.4	0.1	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|222481482|ref|YP_002567718.1|	-	4.3e-05	23.3	0.2	6.1e-05	22.8	0.2	1.2	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.22	gi|222481482|ref|YP_002567718.1|	-	0.00015	21.6	0.2	0.00029	20.7	0.2	1.4	1	0	0	1	1	1	1	MarR	family
GntR	PF00392.21	gi|222481482|ref|YP_002567718.1|	-	0.00021	20.9	0.8	0.00056	19.5	0.6	1.9	1	1	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_11	PF08279.12	gi|222481482|ref|YP_002567718.1|	-	0.00058	19.8	0.3	0.00085	19.2	0.3	1.3	1	0	0	1	1	1	1	HTH	domain
HTH_9	PF08221.11	gi|222481482|ref|YP_002567718.1|	-	0.00089	19.3	0.1	0.0017	18.4	0.1	1.4	1	0	0	1	1	1	1	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
HTH_36	PF13730.6	gi|222481482|ref|YP_002567718.1|	-	0.0027	17.6	0.1	0.025	14.6	0.1	2.2	1	1	0	1	1	1	1	Helix-turn-helix	domain
HTH_28	PF13518.6	gi|222481482|ref|YP_002567718.1|	-	0.0044	17.1	0.3	0.0091	16.1	0.3	1.7	1	1	0	1	1	1	1	Helix-turn-helix	domain
HTH_DeoR	PF08220.12	gi|222481482|ref|YP_002567718.1|	-	0.0079	15.9	0.2	0.013	15.3	0.2	1.4	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_20	PF12840.7	gi|222481482|ref|YP_002567718.1|	-	0.012	15.6	0.3	0.02	15.0	0.3	1.5	1	1	0	1	1	1	0	Helix-turn-helix	domain
HTH_23	PF13384.6	gi|222481482|ref|YP_002567718.1|	-	0.023	14.5	0.0	0.045	13.6	0.0	1.5	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_AsnC-type	PF13404.6	gi|222481482|ref|YP_002567718.1|	-	0.024	14.4	0.2	0.065	13.1	0.1	1.9	1	1	1	2	2	2	0	AsnC-type	helix-turn-helix	domain
Rrf2	PF02082.20	gi|222481482|ref|YP_002567718.1|	-	0.025	14.9	0.2	0.041	14.2	0.2	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
GerE	PF00196.19	gi|222481482|ref|YP_002567718.1|	-	0.028	13.9	0.0	0.044	13.3	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
HrcA_DNA-bdg	PF03444.15	gi|222481482|ref|YP_002567718.1|	-	0.057	13.1	0.0	0.086	12.5	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
HxlR	PF01638.17	gi|222481482|ref|YP_002567718.1|	-	0.06	13.2	0.3	0.095	12.6	0.3	1.3	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
TrmB	PF01978.19	gi|222481482|ref|YP_002567718.1|	-	0.068	13.1	0.2	0.089	12.7	0.2	1.2	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
SMC_Nse1	PF07574.13	gi|222481483|ref|YP_002567719.1|	-	0.11	12.4	0.0	0.12	12.2	0.0	1.1	1	0	0	1	1	1	0	Nse1	non-SMC	component	of	SMC5-6	complex
PadR	PF03551.14	gi|222481484|ref|YP_002567720.1|	-	1.4e-11	44.2	0.2	1.9e-11	43.8	0.2	1.2	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_45	PF14947.6	gi|222481484|ref|YP_002567720.1|	-	0.0037	17.2	0.0	0.009	16.0	0.0	1.6	1	1	1	2	2	2	1	Winged	helix-turn-helix
DUF1495	PF07381.11	gi|222481484|ref|YP_002567720.1|	-	0.017	14.9	0.0	0.024	14.5	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
DUF4364	PF14277.6	gi|222481484|ref|YP_002567720.1|	-	0.02	14.6	0.1	0.048	13.4	0.0	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4364)
DUF505	PF04458.12	gi|222481484|ref|YP_002567720.1|	-	0.064	11.6	0.1	0.069	11.5	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF505)
FUR	PF01475.19	gi|222481484|ref|YP_002567720.1|	-	0.093	12.9	0.0	0.12	12.6	0.0	1.1	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
Zn-ribbon_8	PF09723.10	gi|222481485|ref|YP_002567721.1|	-	9.4e-05	22.5	2.5	0.0063	16.6	1.1	2.1	2	0	0	2	2	2	2	Zinc	ribbon	domain
HNH_5	PF14279.6	gi|222481485|ref|YP_002567721.1|	-	0.039	13.8	0.3	0.047	13.6	0.3	1.2	1	0	0	1	1	1	0	HNH	endonuclease
Terminase_GpA	PF05876.12	gi|222481485|ref|YP_002567721.1|	-	0.088	11.3	0.3	0.091	11.3	0.3	1.0	1	0	0	1	1	1	0	Phage	terminase	large	subunit	(GpA)
TrmB	PF01978.19	gi|222481488|ref|YP_002567724.1|	-	0.01	15.7	0.1	0.05	13.5	0.0	1.9	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|222481488|ref|YP_002567724.1|	-	0.026	14.3	0.0	0.052	13.4	0.0	1.5	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
Mrr_cat	PF04471.12	gi|222481490|ref|YP_002567726.1|	-	1.8e-05	24.7	0.0	0.00011	22.2	0.0	2.0	2	0	0	2	2	2	1	Restriction	endonuclease
Cob_adeno_trans	PF01923.18	gi|222481490|ref|YP_002567726.1|	-	0.08	13.1	0.1	0.14	12.2	0.1	1.5	1	0	0	1	1	1	0	Cobalamin	adenosyltransferase
NPV_P10	PF05531.12	gi|222481490|ref|YP_002567726.1|	-	0.13	12.7	1.2	2.4	8.7	0.1	2.4	2	0	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
N6_Mtase	PF02384.16	gi|222481492|ref|YP_002567728.1|	-	7.1e-06	25.5	0.0	1.4	8.1	0.0	4.0	3	1	0	3	3	3	3	N-6	DNA	Methylase
Eco57I	PF07669.11	gi|222481492|ref|YP_002567728.1|	-	3.8e-05	24.1	0.0	0.16	12.5	0.0	2.6	2	1	0	2	2	2	2	Eco57I	restriction-modification	methylase
Bac_A_amyl_C	PF18612.1	gi|222481492|ref|YP_002567728.1|	-	0.046	13.5	0.1	0.14	11.9	0.1	1.8	1	0	0	1	1	1	0	Bacterial	Alpha	amylase	C-terminal	domain
Myofilin	PF15929.5	gi|222481492|ref|YP_002567728.1|	-	0.16	12.4	0.0	0.37	11.2	0.0	1.5	1	0	0	1	1	1	0	Myofilin
DDE_Tnp_1	PF01609.21	gi|222481493|ref|YP_002567729.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
TrwB_AAD_bind	PF10412.9	gi|222481494|ref|YP_002567730.1|	-	5.2e-14	52.0	0.1	1.2e-07	31.0	0.0	2.4	2	0	0	2	2	2	2	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
T4SS-DNA_transf	PF02534.14	gi|222481494|ref|YP_002567730.1|	-	1.2e-10	40.8	0.0	2.1e-10	40.0	0.0	1.3	1	0	0	1	1	1	1	Type	IV	secretory	system	Conjugative	DNA	transfer
TraG-D_C	PF12696.7	gi|222481494|ref|YP_002567730.1|	-	1.9e-08	34.4	0.0	1.6e-07	31.4	0.0	2.4	2	0	0	2	2	2	1	TraM	recognition	site	of	TraD	and	TraG
DUF87	PF01935.17	gi|222481494|ref|YP_002567730.1|	-	5.1e-07	30.0	0.4	5.1e-07	30.0	0.4	2.9	2	1	0	2	2	2	1	Helicase	HerA,	central	domain
AAA_10	PF12846.7	gi|222481494|ref|YP_002567730.1|	-	0.0028	16.6	0.0	0.0056	15.7	0.0	1.4	1	0	0	1	1	1	1	AAA-like	domain
DUF853	PF05872.12	gi|222481494|ref|YP_002567730.1|	-	0.05	12.2	1.0	0.08	11.5	0.0	1.7	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF853)
FtsK_SpoIIIE	PF01580.18	gi|222481494|ref|YP_002567730.1|	-	0.063	12.6	0.1	1.3	8.3	0.0	2.3	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
CLP1_P	PF16575.5	gi|222481494|ref|YP_002567730.1|	-	0.081	12.7	0.0	0.19	11.5	0.0	1.6	1	0	0	1	1	1	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
AAA_22	PF13401.6	gi|222481494|ref|YP_002567730.1|	-	0.11	12.7	0.1	0.93	9.8	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
GCV_T	PF01571.21	gi|222481494|ref|YP_002567730.1|	-	0.11	11.8	0.0	0.21	10.9	0.0	1.3	1	0	0	1	1	1	0	Aminomethyltransferase	folate-binding	domain
Pox_A32	PF04665.12	gi|222481494|ref|YP_002567730.1|	-	0.19	11.2	0.1	14	5.0	0.0	2.2	2	0	0	2	2	2	0	Poxvirus	A32	protein
DUF4719	PF15843.5	gi|222481494|ref|YP_002567730.1|	-	0.65	10.1	6.2	4.9	7.2	5.9	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4719)
DUF5518	PF17647.1	gi|222481496|ref|YP_002567732.1|	-	1.8e-16	60.3	9.0	2.3e-16	60.0	9.0	1.1	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF5518)
CPBP	PF02517.16	gi|222481496|ref|YP_002567732.1|	-	0.15	12.5	2.1	0.14	12.5	0.5	1.7	1	1	1	2	2	2	0	CPBP	intramembrane	metalloprotease
DUF4229	PF14012.6	gi|222481496|ref|YP_002567732.1|	-	0.52	10.4	7.3	0.41	10.8	0.5	2.7	3	1	0	3	3	3	0	Protein	of	unknown	function	(DUF4229)
UPF0061	PF02696.14	gi|222481497|ref|YP_002567733.1|	-	1.5e-108	363.6	0.6	9.8e-107	357.6	0.6	2.0	1	1	0	1	1	1	1	Uncharacterized	ACR,	YdiU/UPF0061	family
DUF4250	PF14056.6	gi|222481497|ref|YP_002567733.1|	-	0.3	11.1	2.0	15	5.7	0.1	3.0	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4250)
DDE_3	PF13358.6	gi|222481498|ref|YP_002567734.1|	-	5.5e-24	84.6	0.0	6.6e-24	84.3	0.0	1.1	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
HTH_33	PF13592.6	gi|222481499|ref|YP_002567735.1|	-	3.5e-24	84.2	2.1	3.5e-24	84.2	2.1	2.0	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_32	PF13565.6	gi|222481499|ref|YP_002567735.1|	-	8.6e-16	58.3	0.8	3e-15	56.6	0.0	2.2	3	0	0	3	3	3	1	Homeodomain-like	domain
HTH_29	PF13551.6	gi|222481499|ref|YP_002567735.1|	-	1.1e-12	47.8	0.0	4e-12	46.0	0.0	1.9	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|222481499|ref|YP_002567735.1|	-	1e-10	41.0	4.0	5.6e-09	35.6	0.1	3.8	4	0	0	4	4	4	1	Homeodomain-like	domain
HTH_28	PF13518.6	gi|222481499|ref|YP_002567735.1|	-	3.9e-09	36.5	2.1	1.4e-08	34.7	0.0	2.7	3	1	0	3	3	3	1	Helix-turn-helix	domain
Terminase_5	PF06056.12	gi|222481499|ref|YP_002567735.1|	-	4.2e-07	29.8	1.2	0.0002	21.2	0.0	2.7	2	1	1	3	3	3	2	Putative	ATPase	subunit	of	terminase	(gpP-like)
HTH_Tnp_Tc3_2	PF01498.18	gi|222481499|ref|YP_002567735.1|	-	3.5e-06	27.2	0.0	7.6e-06	26.1	0.0	1.5	1	0	0	1	1	1	1	Transposase
HTH_7	PF02796.15	gi|222481499|ref|YP_002567735.1|	-	1.7e-05	24.8	0.0	0.013	15.6	0.0	3.2	3	0	0	3	3	3	1	Helix-turn-helix	domain	of	resolvase
HTH_Tnp_IS630	PF01710.16	gi|222481499|ref|YP_002567735.1|	-	4e-05	23.7	0.2	0.28	11.2	0.0	2.1	2	0	0	2	2	2	2	Transposase
HTH_Tnp_1	PF01527.20	gi|222481499|ref|YP_002567735.1|	-	6.1e-05	23.3	0.1	6.1e-05	23.3	0.1	2.3	2	1	0	2	2	2	1	Transposase
HTH_21	PF13276.6	gi|222481499|ref|YP_002567735.1|	-	0.00033	20.7	0.0	0.0029	17.7	0.0	2.2	2	0	0	2	2	2	1	HTH-like	domain
P22_Cro	PF14549.6	gi|222481499|ref|YP_002567735.1|	-	0.0018	18.1	0.2	0.14	12.0	0.1	2.3	2	0	0	2	2	2	1	DNA-binding	transcriptional	regulator	Cro
DDE_Tnp_ISAZ013	PF07592.11	gi|222481499|ref|YP_002567735.1|	-	0.094	11.7	0.0	0.16	10.9	0.0	1.4	2	0	0	2	2	2	0	Rhodopirellula	transposase	DDE	domain
DprA_WH	PF17782.1	gi|222481500|ref|YP_002567736.1|	-	0.0097	16.0	0.0	0.01	15.9	0.0	1.0	1	0	0	1	1	1	1	DprA	winged	helix	domain
MarR_2	PF12802.7	gi|222481501|ref|YP_002567737.1|	-	7.3e-14	51.4	1.1	9.2e-08	31.9	0.7	2.6	2	0	0	2	2	2	2	MarR	family
TrmB	PF01978.19	gi|222481501|ref|YP_002567737.1|	-	2.7e-09	36.8	0.2	0.00016	21.5	0.0	2.7	2	0	0	2	2	2	2	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|222481501|ref|YP_002567737.1|	-	6.9e-09	35.1	0.3	0.004	16.7	0.0	2.5	2	0	0	2	2	2	2	Winged	helix-turn-helix	DNA-binding
Rrf2	PF02082.20	gi|222481501|ref|YP_002567737.1|	-	2.9e-08	33.9	0.0	0.015	15.7	0.0	2.4	2	0	0	2	2	2	2	Transcriptional	regulator
MarR	PF01047.22	gi|222481501|ref|YP_002567737.1|	-	5.8e-08	32.5	0.0	0.004	17.1	0.1	2.5	2	0	0	2	2	2	2	MarR	family
HTH_Crp_2	PF13545.6	gi|222481501|ref|YP_002567737.1|	-	1.1e-07	31.7	0.0	0.00055	19.9	0.0	2.5	2	0	0	2	2	2	2	Crp-like	helix-turn-helix	domain
HTH_28	PF13518.6	gi|222481501|ref|YP_002567737.1|	-	1.1e-06	28.6	0.2	0.00094	19.3	0.0	2.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_29	PF13551.6	gi|222481501|ref|YP_002567737.1|	-	1.2e-06	28.5	0.3	0.0071	16.3	0.0	2.6	2	0	0	2	2	2	2	Winged	helix-turn	helix
HTH_27	PF13463.6	gi|222481501|ref|YP_002567737.1|	-	1.4e-06	28.6	0.6	1.8e-05	25.1	0.3	2.3	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
Crp	PF00325.20	gi|222481501|ref|YP_002567737.1|	-	1.5e-05	24.6	0.8	0.019	14.6	0.4	2.5	2	0	0	2	2	2	2	Bacterial	regulatory	proteins,	crp	family
HTH_23	PF13384.6	gi|222481501|ref|YP_002567737.1|	-	1.5e-05	24.6	0.1	0.069	13.0	0.0	2.6	2	0	0	2	2	2	2	Homeodomain-like	domain
HTH_IclR	PF09339.10	gi|222481501|ref|YP_002567737.1|	-	1.6e-05	24.6	0.1	0.22	11.4	0.0	2.9	3	0	0	3	3	3	2	IclR	helix-turn-helix	domain
HTH_20	PF12840.7	gi|222481501|ref|YP_002567737.1|	-	5.5e-05	23.2	0.2	0.099	12.7	0.2	2.6	2	0	0	2	2	2	2	Helix-turn-helix	domain
GntR	PF00392.21	gi|222481501|ref|YP_002567737.1|	-	0.0014	18.2	0.1	2.6	7.7	0.0	2.8	3	0	0	3	3	3	2	Bacterial	regulatory	proteins,	gntR	family
HTH_5	PF01022.20	gi|222481501|ref|YP_002567737.1|	-	0.0077	16.1	0.0	2	8.3	0.0	2.6	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_38	PF13936.6	gi|222481501|ref|YP_002567737.1|	-	0.02	14.7	1.1	1.3	8.8	0.0	2.7	3	0	0	3	3	3	0	Helix-turn-helix	domain
DUF746	PF05344.11	gi|222481501|ref|YP_002567737.1|	-	0.02	14.7	0.0	0.055	13.3	0.0	1.8	1	0	0	1	1	1	0	Domain	of	Unknown	Function	(DUF746)
RPA_C	PF08784.11	gi|222481501|ref|YP_002567737.1|	-	0.022	15.4	0.0	0.16	12.7	0.0	2.0	2	0	0	2	2	2	0	Replication	protein	A	C	terminal
Penicillinase_R	PF03965.16	gi|222481501|ref|YP_002567737.1|	-	0.024	15.0	0.0	9.3	6.6	0.0	2.4	2	0	0	2	2	2	0	Penicillinase	repressor
LZ_Tnp_IS481	PF13011.6	gi|222481501|ref|YP_002567737.1|	-	0.047	14.2	0.0	0.1	13.1	0.0	1.5	1	0	0	1	1	1	0	leucine-zipper	of	insertion	element	IS481
HTH_47	PF16221.5	gi|222481501|ref|YP_002567737.1|	-	0.068	12.7	0.0	3.6	7.2	0.0	2.6	2	0	0	2	2	2	0	winged	helix-turn-helix
Fe_dep_repress	PF01325.19	gi|222481501|ref|YP_002567737.1|	-	0.12	12.6	0.0	13	6.0	0.0	2.5	2	0	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Sigma70_r4	PF04545.16	gi|222481501|ref|YP_002567737.1|	-	0.12	11.9	0.1	2.3	7.8	0.0	2.5	2	0	0	2	2	2	0	Sigma-70,	region	4
HTH_Tnp_Tc3_1	PF11427.8	gi|222481501|ref|YP_002567737.1|	-	0.2	11.6	1.2	15	5.5	0.1	3.1	3	0	0	3	3	3	0	Tc3	transposase
DDE_Tnp_IS1595	PF12762.7	gi|222481502|ref|YP_002567738.1|	-	4.8e-08	33.2	0.0	9.5e-08	32.2	0.0	1.4	1	0	0	1	1	1	1	ISXO2-like	transposase	domain
eIF-5_eIF-2B	PF01873.17	gi|222481502|ref|YP_002567738.1|	-	0.0059	16.5	0.0	0.38	10.7	0.1	2.2	2	0	0	2	2	2	1	Domain	found	in	IF2B/IF5
Zn_Tnp_IS1595	PF12760.7	gi|222481502|ref|YP_002567738.1|	-	0.017	15.1	2.8	0.043	13.8	2.8	1.7	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
IBR	PF01485.21	gi|222481502|ref|YP_002567738.1|	-	0.046	14.0	0.7	0.084	13.1	0.7	1.4	1	0	0	1	1	1	0	IBR	domain,	a	half	RING-finger	domain
Auto_anti-p27	PF06677.12	gi|222481502|ref|YP_002567738.1|	-	0.047	13.9	1.6	0.083	13.1	1.6	1.4	1	0	0	1	1	1	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
OrfB_Zn_ribbon	PF07282.11	gi|222481502|ref|YP_002567738.1|	-	0.056	13.4	2.2	0.14	12.1	2.2	1.6	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
HTH_38	PF13936.6	gi|222481502|ref|YP_002567738.1|	-	0.11	12.3	0.0	0.18	11.6	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
C1_1	PF00130.22	gi|222481502|ref|YP_002567738.1|	-	0.11	12.4	2.4	0.22	11.5	2.4	1.4	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
zf-ribbon_3	PF13248.6	gi|222481502|ref|YP_002567738.1|	-	0.15	11.5	4.4	1.1	8.7	4.4	2.1	1	1	0	1	1	1	0	zinc-ribbon	domain
Nudix_N_2	PF14803.6	gi|222481502|ref|YP_002567738.1|	-	0.3	11.0	2.6	0.85	9.6	2.6	1.7	1	0	0	1	1	1	0	Nudix	N-terminal
SlyX	PF04102.12	gi|222481503|ref|YP_002567739.1|	-	0.06	14.0	1.8	0.28	11.8	1.8	1.8	2	0	0	2	2	2	0	SlyX
Cdc6_C	PF09079.11	gi|222481504|ref|YP_002567740.1|	-	7e-18	64.4	0.0	1.4e-17	63.4	0.0	1.5	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|222481504|ref|YP_002567740.1|	-	1.5e-11	44.7	0.1	4.6e-11	43.1	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|222481504|ref|YP_002567740.1|	-	1.1e-09	38.9	0.9	4.7e-09	36.8	0.1	2.4	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.29	gi|222481504|ref|YP_002567740.1|	-	6.6e-07	29.8	0.0	1.8e-06	28.4	0.0	1.8	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF815	PF05673.13	gi|222481504|ref|YP_002567740.1|	-	1.5e-05	24.3	0.0	3e-05	23.3	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
Sigma54_activat	PF00158.26	gi|222481504|ref|YP_002567740.1|	-	8.1e-05	22.4	0.8	0.00021	21.1	0.1	2.0	3	0	0	3	3	3	1	Sigma-54	interaction	domain
NACHT	PF05729.12	gi|222481504|ref|YP_002567740.1|	-	0.00016	21.7	0.0	0.00026	21.0	0.0	1.3	1	0	0	1	1	1	1	NACHT	domain
AAA_5	PF07728.14	gi|222481504|ref|YP_002567740.1|	-	0.0011	19.0	0.0	0.0031	17.5	0.0	1.8	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
Sigma54_activ_2	PF14532.6	gi|222481504|ref|YP_002567740.1|	-	0.0015	18.6	0.0	0.0047	17.1	0.0	1.8	2	0	0	2	2	2	1	Sigma-54	interaction	domain
TniB	PF05621.11	gi|222481504|ref|YP_002567740.1|	-	0.0042	16.5	0.0	0.0095	15.4	0.0	1.6	1	0	0	1	1	1	1	Bacterial	TniB	protein
ATPase_2	PF01637.18	gi|222481504|ref|YP_002567740.1|	-	0.0053	16.7	0.3	0.023	14.6	0.0	2.0	2	1	0	2	2	2	1	ATPase	domain	predominantly	from	Archaea
Rad51	PF08423.11	gi|222481504|ref|YP_002567740.1|	-	0.012	14.9	0.0	0.017	14.4	0.0	1.2	1	0	0	1	1	1	0	Rad51
RNA_helicase	PF00910.22	gi|222481504|ref|YP_002567740.1|	-	0.017	15.5	0.2	0.046	14.1	0.2	2.0	1	1	0	1	1	1	0	RNA	helicase
AAA_7	PF12775.7	gi|222481504|ref|YP_002567740.1|	-	0.024	14.2	0.0	0.044	13.3	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
ABC_tran	PF00005.27	gi|222481504|ref|YP_002567740.1|	-	0.053	14.0	0.3	0.17	12.4	0.1	2.0	1	1	1	2	2	2	0	ABC	transporter
AAA_24	PF13479.6	gi|222481504|ref|YP_002567740.1|	-	0.064	13.0	0.0	0.11	12.2	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_32	PF13654.6	gi|222481504|ref|YP_002567740.1|	-	0.07	11.9	2.4	4	6.1	1.2	2.2	2	0	0	2	2	2	0	AAA	domain
TsaE	PF02367.17	gi|222481504|ref|YP_002567740.1|	-	0.13	12.2	0.0	0.49	10.4	0.0	1.9	2	0	0	2	2	2	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
RFX_DNA_binding	PF02257.15	gi|222481504|ref|YP_002567740.1|	-	0.14	12.8	0.0	0.31	11.7	0.0	1.5	1	0	0	1	1	1	0	RFX	DNA-binding	domain
DEAD	PF00270.29	gi|222481504|ref|YP_002567740.1|	-	0.47	10.2	3.5	14	5.4	1.7	2.7	2	1	0	2	2	2	0	DEAD/DEAH	box	helicase
KAP_NTPase	PF07693.14	gi|222481504|ref|YP_002567740.1|	-	0.51	9.5	3.2	2	7.6	0.0	2.4	2	1	1	3	3	3	0	KAP	family	P-loop	domain
A2L_zn_ribbon	PF08792.10	gi|222481506|ref|YP_002567742.1|	-	0.00015	21.4	0.8	0.42	10.4	0.3	2.1	2	0	0	2	2	2	2	A2L	zinc	ribbon	domain
HypA	PF01155.19	gi|222481506|ref|YP_002567742.1|	-	0.0015	18.5	0.6	0.0016	18.5	0.6	1.1	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
RNA_POL_M_15KD	PF02150.16	gi|222481506|ref|YP_002567742.1|	-	0.0019	18.0	0.3	0.0019	18.0	0.3	2.0	1	1	1	2	2	2	1	RNA	polymerases	M/15	Kd	subunit
zf-ribbon_3	PF13248.6	gi|222481506|ref|YP_002567742.1|	-	0.0044	16.4	1.3	0.0053	16.1	1.3	1.2	1	0	0	1	1	1	1	zinc-ribbon	domain
DUF1272	PF06906.11	gi|222481506|ref|YP_002567742.1|	-	0.0047	17.0	0.8	0.0052	16.9	0.8	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1272)
TackOD1	PF18551.1	gi|222481506|ref|YP_002567742.1|	-	0.0053	16.5	0.6	0.0055	16.4	0.6	1.0	1	0	0	1	1	1	1	Thaumarchaeal	output	domain	1
Cytochrom_c3_2	PF14537.6	gi|222481506|ref|YP_002567742.1|	-	0.0056	17.1	0.7	0.0065	16.9	0.7	1.1	1	0	0	1	1	1	1	Cytochrome	c3
zf-UBR	PF02207.20	gi|222481506|ref|YP_002567742.1|	-	0.0081	16.3	1.3	0.0086	16.2	1.3	1.1	1	0	0	1	1	1	1	Putative	zinc	finger	in	N-recognin	(UBR	box)
DZR	PF12773.7	gi|222481506|ref|YP_002567742.1|	-	0.0086	16.1	0.9	0.0096	15.9	0.9	1.1	1	0	0	1	1	1	1	Double	zinc	ribbon
Ribosomal_L37e	PF01907.19	gi|222481506|ref|YP_002567742.1|	-	0.0093	16.1	2.9	0.012	15.8	2.9	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L37e
DUF35_N	PF12172.8	gi|222481506|ref|YP_002567742.1|	-	0.012	15.5	1.0	0.018	14.9	1.0	1.3	1	0	0	1	1	1	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zinc_ribbon_15	PF17032.5	gi|222481506|ref|YP_002567742.1|	-	0.016	16.0	1.0	0.018	15.7	1.0	1.1	1	0	0	1	1	1	0	zinc-ribbon	family
TF_Zn_Ribbon	PF08271.12	gi|222481506|ref|YP_002567742.1|	-	0.034	13.6	4.0	0.056	13.0	4.0	1.4	1	1	0	1	1	1	0	TFIIB	zinc-binding
Ribosomal_L32p	PF01783.23	gi|222481506|ref|YP_002567742.1|	-	0.037	14.3	0.2	0.039	14.2	0.2	1.2	1	0	0	1	1	1	0	Ribosomal	L32p	protein	family
Zn-ribbon_8	PF09723.10	gi|222481506|ref|YP_002567742.1|	-	0.042	14.0	5.3	0.1	12.8	5.3	1.6	1	1	0	1	1	1	0	Zinc	ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|222481506|ref|YP_002567742.1|	-	0.046	13.7	5.3	2.2	8.3	0.1	2.2	2	1	0	2	2	2	0	Transposase	zinc-ribbon	domain
DUF1258	PF06869.12	gi|222481506|ref|YP_002567742.1|	-	0.053	13.0	0.5	0.059	12.8	0.5	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1258)
Rubredoxin_2	PF18073.1	gi|222481506|ref|YP_002567742.1|	-	0.078	12.7	5.6	0.8	9.5	0.7	2.1	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
zf_UBZ	PF18439.1	gi|222481506|ref|YP_002567742.1|	-	0.21	11.2	3.5	0.66	9.6	0.2	2.2	1	1	1	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
TRAM	PF01938.20	gi|222481507|ref|YP_002567743.1|	-	1.3e-09	37.9	3.4	2.5e-09	37.0	3.4	1.5	1	0	0	1	1	1	1	TRAM	domain
MarR_2	PF12802.7	gi|222481508|ref|YP_002567744.1|	-	6.5e-05	22.7	0.5	8.8e-05	22.3	0.5	1.2	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|222481508|ref|YP_002567744.1|	-	0.003	17.4	0.2	0.0039	17.0	0.2	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|222481508|ref|YP_002567744.1|	-	0.004	16.7	0.1	0.0057	16.2	0.1	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|222481508|ref|YP_002567744.1|	-	0.007	16.3	0.1	0.011	15.7	0.1	1.3	1	0	0	1	1	1	1	MarR	family
HTH_Mga	PF08280.11	gi|222481508|ref|YP_002567744.1|	-	0.031	14.3	0.0	0.052	13.6	0.0	1.4	1	0	0	1	1	1	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
GntR	PF00392.21	gi|222481508|ref|YP_002567744.1|	-	0.057	13.1	1.8	0.12	12.0	1.3	1.8	1	1	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_11	PF08279.12	gi|222481508|ref|YP_002567744.1|	-	0.066	13.2	0.2	0.11	12.5	0.2	1.3	1	0	0	1	1	1	0	HTH	domain
Phage_rep_org_N	PF09681.10	gi|222481508|ref|YP_002567744.1|	-	0.11	12.4	0.0	0.14	12.1	0.0	1.2	1	0	0	1	1	1	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
DUF4525	PF15027.6	gi|222481508|ref|YP_002567744.1|	-	0.11	12.2	0.0	0.15	11.8	0.0	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4525)
SMC_Nse1	PF07574.13	gi|222481509|ref|YP_002567745.1|	-	0.022	14.7	0.0	0.024	14.5	0.0	1.1	1	0	0	1	1	1	0	Nse1	non-SMC	component	of	SMC5-6	complex
Amidase02_C	PF12123.8	gi|222481509|ref|YP_002567745.1|	-	0.082	12.6	0.1	0.15	11.8	0.1	1.4	1	0	0	1	1	1	0	N-acetylmuramoyl-l-alanine	amidase
RPA_C	PF08784.11	gi|222481509|ref|YP_002567745.1|	-	0.11	13.2	0.1	0.15	12.8	0.1	1.2	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
DUF2800	PF10926.8	gi|222481510|ref|YP_002567746.1|	-	0.00043	19.7	0.2	0.00056	19.3	0.2	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2800)
DUF2383	PF09537.10	gi|222481510|ref|YP_002567746.1|	-	0.03	14.7	0.9	0.42	11.0	0.3	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF2383)
BTG	PF07742.12	gi|222481510|ref|YP_002567746.1|	-	0.13	12.2	0.0	0.29	11.0	0.0	1.6	1	0	0	1	1	1	0	BTG	family
Wbp11	PF09429.10	gi|222481510|ref|YP_002567746.1|	-	0.37	11.2	3.7	0.2	12.1	0.8	2.0	2	0	0	2	2	2	0	WW	domain	binding	protein	11
ParD_antitoxin	PF03693.14	gi|222481510|ref|YP_002567746.1|	-	0.43	11.0	2.6	1	9.8	0.1	2.3	2	0	0	2	2	2	0	Bacterial	antitoxin	of	ParD	toxin-antitoxin	type	II	system	and	RHH
ABC_tran_CTD	PF16326.5	gi|222481510|ref|YP_002567746.1|	-	0.67	10.2	5.8	0.4	11.0	2.6	2.4	2	0	0	2	2	2	0	ABC	transporter	C-terminal	domain
PadR	PF03551.14	gi|222481511|ref|YP_002567747.1|	-	1.8e-13	50.3	0.2	2.2e-13	50.0	0.2	1.2	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_27	PF13463.6	gi|222481511|ref|YP_002567747.1|	-	0.002	18.6	0.1	0.0031	17.9	0.1	1.6	1	1	0	1	1	1	1	Winged	helix	DNA-binding	domain
DUF1495	PF07381.11	gi|222481511|ref|YP_002567747.1|	-	0.0043	16.8	0.0	0.0057	16.5	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain	(DUF1495)
TrmB	PF01978.19	gi|222481511|ref|YP_002567747.1|	-	0.013	15.3	0.0	0.019	14.9	0.0	1.2	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
SMC_ScpB	PF04079.16	gi|222481511|ref|YP_002567747.1|	-	0.041	13.5	0.0	0.047	13.3	0.0	1.3	1	0	0	1	1	1	0	Segregation	and	condensation	complex	subunit	ScpB
FUR	PF01475.19	gi|222481511|ref|YP_002567747.1|	-	0.085	13.0	0.1	0.1	12.8	0.1	1.1	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
C1_1	PF00130.22	gi|222481512|ref|YP_002567748.1|	-	0.0057	16.5	1.3	0.0074	16.1	1.3	1.2	1	0	0	1	1	1	1	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
DUF2318	PF10080.9	gi|222481512|ref|YP_002567748.1|	-	0.0068	16.5	0.3	0.0076	16.4	0.3	1.1	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2318)
DZR	PF12773.7	gi|222481512|ref|YP_002567748.1|	-	0.019	15.0	0.7	0.028	14.5	0.7	1.2	1	0	0	1	1	1	0	Double	zinc	ribbon
C1_2	PF03107.16	gi|222481512|ref|YP_002567748.1|	-	0.03	14.6	0.8	0.044	14.1	0.8	1.3	1	0	0	1	1	1	0	C1	domain
Zn_Tnp_IS91	PF14319.6	gi|222481512|ref|YP_002567748.1|	-	0.039	14.0	0.8	0.044	13.8	0.8	1.1	1	0	0	1	1	1	0	Transposase	zinc-binding	domain
MarR_2	PF12802.7	gi|222481513|ref|YP_002567749.1|	-	1.6e-05	24.7	0.0	2.6e-05	24.0	0.0	1.3	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|222481513|ref|YP_002567749.1|	-	0.00052	19.9	0.0	0.00098	19.0	0.0	1.4	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|222481513|ref|YP_002567749.1|	-	0.00059	19.6	0.0	0.00085	19.1	0.0	1.2	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Rrf2	PF02082.20	gi|222481513|ref|YP_002567749.1|	-	0.0098	16.2	0.0	0.023	15.0	0.0	1.5	2	0	0	2	2	2	1	Transcriptional	regulator
BLACT_WH	PF17778.1	gi|222481513|ref|YP_002567749.1|	-	0.011	15.8	0.0	0.019	14.9	0.0	1.4	1	0	0	1	1	1	0	Beta-lactamase	associated	winged	helix	domain
NfeD	PF01957.18	gi|222481513|ref|YP_002567749.1|	-	0.011	16.1	0.0	0.015	15.6	0.0	1.3	1	0	0	1	1	1	0	NfeD-like	C-terminal,	partner-binding
MarR	PF01047.22	gi|222481513|ref|YP_002567749.1|	-	0.021	14.8	0.0	0.027	14.4	0.0	1.2	1	0	0	1	1	1	0	MarR	family
HTH_20	PF12840.7	gi|222481513|ref|YP_002567749.1|	-	0.023	14.7	0.0	0.035	14.2	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|222481513|ref|YP_002567749.1|	-	0.039	13.8	0.0	0.056	13.3	0.0	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Sulfolobus_pRN	PF05584.11	gi|222481513|ref|YP_002567749.1|	-	0.063	13.3	0.0	0.086	12.9	0.0	1.2	1	0	0	1	1	1	0	Sulfolobus	plasmid	regulatory	protein
Fe_dep_repress	PF01325.19	gi|222481513|ref|YP_002567749.1|	-	0.12	12.5	0.0	0.2	11.9	0.0	1.3	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
GntR	PF00392.21	gi|222481513|ref|YP_002567749.1|	-	0.14	11.9	0.0	0.23	11.1	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
PemK_toxin	PF02452.17	gi|222481514|ref|YP_002567750.1|	-	0.00061	20.2	0.0	0.00062	20.1	0.0	1.2	1	1	0	1	1	1	1	PemK-like,	MazF-like	toxin	of	type	II	toxin-antitoxin	system
Mrr_cat	PF04471.12	gi|222481515|ref|YP_002567751.1|	-	3.8e-08	33.3	0.0	5.2e-08	32.9	0.0	1.2	1	0	0	1	1	1	1	Restriction	endonuclease
Mrr_cat_2	PF13156.6	gi|222481515|ref|YP_002567751.1|	-	0.00082	19.3	0.0	0.0012	18.8	0.0	1.2	1	0	0	1	1	1	1	Restriction	endonuclease
MotA_activ	PF09114.10	gi|222481516|ref|YP_002567752.1|	-	0.032	14.3	0.0	0.062	13.4	0.0	1.5	1	1	1	2	2	2	0	Transcription	factor	MotA,	activation	domain
RuBisCO_small	PF00101.20	gi|222481516|ref|YP_002567752.1|	-	0.097	12.7	0.0	0.22	11.6	0.0	1.6	1	1	1	2	2	2	0	Ribulose	bisphosphate	carboxylase,	small	chain
HisKA_7TM	PF16927.5	gi|222481517|ref|YP_002567753.1|	-	2.5e-14	53.8	22.8	3.9e-14	53.2	22.8	1.2	1	0	0	1	1	1	1	N-terminal	7TM	region	of	histidine	kinase
HATPase_c	PF02518.26	gi|222481517|ref|YP_002567753.1|	-	1.8e-13	51.0	0.0	3.6e-13	50.0	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS	PF00989.25	gi|222481517|ref|YP_002567753.1|	-	2.6e-11	43.5	0.0	2.6e-09	37.1	0.0	2.7	2	0	0	2	2	2	1	PAS	fold
PAS_4	PF08448.10	gi|222481517|ref|YP_002567753.1|	-	7e-10	39.1	0.6	3.9e-06	27.1	0.0	3.2	2	1	0	2	2	2	2	PAS	fold
HATPase_c_2	PF13581.6	gi|222481517|ref|YP_002567753.1|	-	4.8e-08	33.0	0.0	1.1e-07	31.8	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
PAS_9	PF13426.7	gi|222481517|ref|YP_002567753.1|	-	4.5e-05	23.6	0.0	0.00019	21.6	0.0	2.1	1	0	0	1	1	1	1	PAS	domain
PAS_10	PF13596.6	gi|222481517|ref|YP_002567753.1|	-	0.00025	21.6	0.0	0.0075	16.8	0.0	2.5	2	0	0	2	2	2	1	PAS	domain
PAS_8	PF13188.7	gi|222481517|ref|YP_002567753.1|	-	0.00037	20.4	0.0	0.52	10.4	0.0	2.8	2	0	0	2	2	2	2	PAS	domain
HisKA_4TM	PF16926.5	gi|222481517|ref|YP_002567753.1|	-	0.00039	20.0	0.2	0.00039	20.0	0.2	2.0	2	1	0	2	2	2	1	Archaeal	4TM	region	of	histidine	kinase
PAS_3	PF08447.12	gi|222481517|ref|YP_002567753.1|	-	0.0017	18.6	0.0	0.0086	16.4	0.0	2.1	2	0	0	2	2	2	1	PAS	fold
DUF202	PF02656.15	gi|222481517|ref|YP_002567753.1|	-	7.2	7.1	9.2	1.1	9.7	1.8	2.8	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF202)
PAS_3	PF08447.12	gi|222481518|ref|YP_002567754.1|	-	7.1e-54	180.1	5.5	1.1e-20	73.6	0.5	5.5	5	0	0	5	5	5	5	PAS	fold
PAS_4	PF08448.10	gi|222481518|ref|YP_002567754.1|	-	3.7e-41	139.8	9.1	1.8e-15	57.1	0.0	5.4	5	0	0	5	5	5	5	PAS	fold
PAS_9	PF13426.7	gi|222481518|ref|YP_002567754.1|	-	4.1e-39	133.0	4.3	2.4e-10	40.6	0.0	5.6	5	1	0	5	5	5	4	PAS	domain
PAS	PF00989.25	gi|222481518|ref|YP_002567754.1|	-	2.4e-33	114.5	3.6	6.8e-09	35.7	0.0	5.7	5	1	0	5	5	5	5	PAS	fold
PAS_8	PF13188.7	gi|222481518|ref|YP_002567754.1|	-	6.2e-29	99.5	0.4	2.5e-08	33.7	0.0	5.6	5	0	0	5	5	5	5	PAS	domain
HATPase_c	PF02518.26	gi|222481518|ref|YP_002567754.1|	-	5.5e-17	62.3	0.1	3.3e-16	59.8	0.0	2.4	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.6	gi|222481518|ref|YP_002567754.1|	-	6.8e-06	26.0	0.0	3e-05	24.0	0.0	2.1	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HATPase_c_5	PF14501.6	gi|222481518|ref|YP_002567754.1|	-	1e-05	25.4	0.0	2.5e-05	24.1	0.0	1.7	1	0	0	1	1	1	1	GHKL	domain
HisKA_4TM	PF16926.5	gi|222481518|ref|YP_002567754.1|	-	4.1e-05	23.2	0.1	7.1e-05	22.4	0.1	1.3	1	0	0	1	1	1	1	Archaeal	4TM	region	of	histidine	kinase
HisKA	PF00512.25	gi|222481518|ref|YP_002567754.1|	-	0.00026	20.9	0.5	0.00026	20.9	0.5	2.3	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
SPOB_a	PF14689.6	gi|222481518|ref|YP_002567754.1|	-	0.00028	20.5	1.9	0.00072	19.2	1.9	1.7	1	0	0	1	1	1	1	Sensor_kinase_SpoOB-type,	alpha-helical	domain
PAS_12	PF18095.1	gi|222481518|ref|YP_002567754.1|	-	0.026	14.1	0.0	19	4.8	0.0	3.7	4	0	0	4	4	4	0	UPF0242	C-terminal	PAS-like	domain
PAS_11	PF14598.6	gi|222481518|ref|YP_002567754.1|	-	0.045	13.9	0.0	32	4.7	0.0	3.6	4	0	0	4	4	4	0	PAS	domain
Spectrin	PF00435.21	gi|222481518|ref|YP_002567754.1|	-	2.4	8.7	14.2	0.35	11.4	0.5	4.7	3	2	1	4	4	4	0	Spectrin	repeat
PAS_4	PF08448.10	gi|222481520|ref|YP_002567756.1|	-	3.7e-33	114.1	4.1	7.4e-19	68.0	0.2	3.0	3	1	1	4	4	4	2	PAS	fold
PAS_3	PF08447.12	gi|222481520|ref|YP_002567756.1|	-	5.9e-26	90.6	0.3	8.2e-21	74.1	0.1	2.5	2	0	0	2	2	2	2	PAS	fold
PAS	PF00989.25	gi|222481520|ref|YP_002567756.1|	-	2.3e-25	88.8	1.0	3.9e-17	62.3	0.0	2.9	2	1	0	2	2	2	2	PAS	fold
PAS_9	PF13426.7	gi|222481520|ref|YP_002567756.1|	-	1.1e-23	83.5	0.8	3.7e-15	56.0	0.0	2.7	3	0	0	3	3	3	2	PAS	domain
HATPase_c	PF02518.26	gi|222481520|ref|YP_002567756.1|	-	1.4e-19	70.7	0.2	3.3e-19	69.4	0.2	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|222481520|ref|YP_002567756.1|	-	9.2e-11	41.6	1.4	9.2e-11	41.6	1.4	2.5	3	0	0	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_8	PF13188.7	gi|222481520|ref|YP_002567756.1|	-	1.7e-09	37.5	0.1	4e-05	23.5	0.0	2.8	2	0	0	2	2	2	2	PAS	domain
PAS_11	PF14598.6	gi|222481520|ref|YP_002567756.1|	-	3.3e-07	30.4	0.0	1.5e-06	28.3	0.0	2.0	2	0	0	2	2	2	1	PAS	domain
HATPase_c_2	PF13581.6	gi|222481520|ref|YP_002567756.1|	-	0.0051	16.8	0.1	0.015	15.3	0.1	1.9	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HATPase_c_3	PF13589.6	gi|222481520|ref|YP_002567756.1|	-	0.01	15.7	0.0	0.022	14.6	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_10	PF13596.6	gi|222481520|ref|YP_002567756.1|	-	0.024	15.2	0.0	0.051	14.2	0.0	1.6	1	0	0	1	1	1	0	PAS	domain
HATPase_c_5	PF14501.6	gi|222481520|ref|YP_002567756.1|	-	0.13	12.2	0.2	1.4	8.9	0.0	2.5	2	1	0	2	2	2	0	GHKL	domain
Phage_integrase	PF00589.22	gi|222481521|ref|YP_002567757.1|	-	3.4e-05	23.7	0.0	9.3e-05	22.3	0.0	1.6	1	1	0	1	1	1	1	Phage	integrase	family
PGA_cap	PF09587.10	gi|222481522|ref|YP_002567758.1|	-	2e-60	204.4	0.1	2.8e-60	204.0	0.1	1.2	1	0	0	1	1	1	1	Bacterial	capsule	synthesis	protein	PGA_cap
CarboxypepD_reg	PF13620.6	gi|222481522|ref|YP_002567758.1|	-	1.2e-06	28.7	0.8	1.2e-06	28.7	0.8	3.1	3	0	0	3	3	3	1	Carboxypeptidase	regulatory-like	domain
bMG3	PF11974.8	gi|222481522|ref|YP_002567758.1|	-	0.0067	16.4	0.3	0.03	14.3	0.1	2.2	3	0	0	3	3	3	1	Bacterial	alpha-2-macroglobulin	MG3	domain
CarbopepD_reg_2	PF13715.6	gi|222481522|ref|YP_002567758.1|	-	0.14	12.2	0.0	0.41	10.7	0.0	1.8	1	0	0	1	1	1	0	CarboxypepD_reg-like	domain
Big_6	PF17936.1	gi|222481522|ref|YP_002567758.1|	-	2.6	8.4	7.4	0.3	11.4	0.6	2.9	3	0	0	3	3	3	0	Bacterial	Ig	domain
Caps_synth_CapC	PF14102.6	gi|222481523|ref|YP_002567759.1|	-	2.5e-23	82.7	29.7	6.2e-22	78.2	9.9	2.8	2	1	1	3	3	3	2	Capsule	biosynthesis	CapC
Mur_ligase_M	PF08245.12	gi|222481524|ref|YP_002567760.1|	-	0.00014	22.0	0.0	0.00032	20.7	0.0	1.7	1	1	0	1	1	1	1	Mur	ligase	middle	domain
HisKA_7TM	PF16927.5	gi|222481525|ref|YP_002567761.1|	-	2.9e-41	141.9	18.8	3.6e-41	141.6	18.8	1.1	1	0	0	1	1	1	1	N-terminal	7TM	region	of	histidine	kinase
PAS_3	PF08447.12	gi|222481525|ref|YP_002567761.1|	-	1.7e-19	69.9	0.0	3.7e-18	65.6	0.0	2.6	2	0	0	2	2	2	1	PAS	fold
PAS_4	PF08448.10	gi|222481525|ref|YP_002567761.1|	-	7.5e-16	58.4	2.5	5.7e-07	29.8	0.4	3.2	2	1	0	2	2	2	2	PAS	fold
HATPase_c	PF02518.26	gi|222481525|ref|YP_002567761.1|	-	6.5e-15	55.6	0.0	1.6e-14	54.4	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS	PF00989.25	gi|222481525|ref|YP_002567761.1|	-	1.5e-13	50.8	0.0	1.4e-05	25.0	0.0	2.6	2	0	0	2	2	2	2	PAS	fold
PAS_9	PF13426.7	gi|222481525|ref|YP_002567761.1|	-	3.4e-10	40.1	0.0	0.0003	21.0	0.0	2.7	2	0	0	2	2	2	2	PAS	domain
HATPase_c_2	PF13581.6	gi|222481525|ref|YP_002567761.1|	-	1.9e-07	31.0	0.0	5.2e-07	29.7	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
PAS_8	PF13188.7	gi|222481525|ref|YP_002567761.1|	-	4.1e-06	26.7	0.1	5.7e-05	23.0	0.0	2.8	3	0	0	3	3	3	1	PAS	domain
HisKA_4TM	PF16926.5	gi|222481525|ref|YP_002567761.1|	-	4.1e-06	26.5	3.3	4.7e-05	23.0	0.0	3.2	3	0	0	3	3	3	1	Archaeal	4TM	region	of	histidine	kinase
SPOB_a	PF14689.6	gi|222481525|ref|YP_002567761.1|	-	8.7e-05	22.2	0.6	0.0002	21.0	0.6	1.6	1	0	0	1	1	1	1	Sensor_kinase_SpoOB-type,	alpha-helical	domain
HisKA	PF00512.25	gi|222481525|ref|YP_002567761.1|	-	9.3e-05	22.4	2.2	0.00024	21.1	2.2	1.6	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_5	PF14501.6	gi|222481525|ref|YP_002567761.1|	-	0.00013	21.8	0.0	0.00029	20.7	0.0	1.5	1	0	0	1	1	1	1	GHKL	domain
Ost5	PF05251.12	gi|222481525|ref|YP_002567761.1|	-	0.4	11.0	6.1	0.24	11.7	0.3	2.7	3	0	0	3	3	3	0	Oligosaccharyltransferase	subunit	5
IclR	PF01614.18	gi|222481526|ref|YP_002567762.1|	-	2.4e-29	101.8	0.0	4.1e-29	101.0	0.0	1.4	1	0	0	1	1	1	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.10	gi|222481526|ref|YP_002567762.1|	-	2.6e-09	36.7	0.5	9.8e-09	34.9	0.1	2.0	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|222481526|ref|YP_002567762.1|	-	6.6e-07	29.1	0.0	2.2e-06	27.5	0.0	1.9	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|222481526|ref|YP_002567762.1|	-	4.2e-06	26.7	0.2	1.3e-05	25.1	0.0	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|222481526|ref|YP_002567762.1|	-	1.2e-05	24.8	0.0	2.9e-05	23.5	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|222481526|ref|YP_002567762.1|	-	1.8e-05	24.6	0.0	0.00011	22.1	0.0	2.1	2	0	0	2	2	2	1	MarR	family
HTH_5	PF01022.20	gi|222481526|ref|YP_002567762.1|	-	3.3e-05	23.7	0.0	7.1e-05	22.6	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.19	gi|222481526|ref|YP_002567762.1|	-	0.00053	19.8	0.2	0.0085	16.0	0.0	2.6	2	1	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
Rrf2	PF02082.20	gi|222481526|ref|YP_002567762.1|	-	0.0006	20.1	0.4	0.0013	19.0	0.2	1.7	2	0	0	2	2	2	1	Transcriptional	regulator
HTH_11	PF08279.12	gi|222481526|ref|YP_002567762.1|	-	0.0014	18.6	0.1	0.006	16.5	0.0	2.1	2	0	0	2	2	2	1	HTH	domain
HTH_10	PF04967.12	gi|222481526|ref|YP_002567762.1|	-	0.0049	16.6	0.1	0.011	15.5	0.1	1.5	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Fe_dep_repress	PF01325.19	gi|222481526|ref|YP_002567762.1|	-	0.0086	16.3	0.0	0.023	14.9	0.0	1.7	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_DeoR	PF08220.12	gi|222481526|ref|YP_002567762.1|	-	0.018	14.8	0.0	0.057	13.2	0.0	1.8	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
HTH_45	PF14947.6	gi|222481526|ref|YP_002567762.1|	-	0.03	14.3	0.0	0.12	12.3	0.0	2.0	2	0	0	2	2	2	0	Winged	helix-turn-helix
HTH_34	PF13601.6	gi|222481526|ref|YP_002567762.1|	-	0.033	14.4	0.0	0.094	12.9	0.0	1.7	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
EAP30	PF04157.16	gi|222481526|ref|YP_002567762.1|	-	0.041	13.2	0.8	0.57	9.4	0.1	2.1	2	0	0	2	2	2	0	EAP30/Vps36	family
HTH_40	PF14493.6	gi|222481526|ref|YP_002567762.1|	-	0.092	13.2	0.1	0.45	11.0	0.0	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain
FliG_M	PF14841.6	gi|222481526|ref|YP_002567762.1|	-	0.13	12.5	0.3	4.4	7.6	0.0	2.3	2	0	0	2	2	2	0	FliG	middle	domain
DUF1803	PF08820.10	gi|222481526|ref|YP_002567762.1|	-	0.14	12.2	0.0	0.23	11.5	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1803)
SBP_bac_5	PF00496.22	gi|222481527|ref|YP_002567763.1|	-	1.3e-72	244.8	7.0	1.6e-72	244.6	7.0	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
TAT_signal	PF10518.9	gi|222481527|ref|YP_002567763.1|	-	0.013	15.3	6.7	0.023	14.5	6.7	1.3	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
UCR_Fe-S_N	PF10399.9	gi|222481527|ref|YP_002567763.1|	-	0.053	12.9	0.6	0.099	12.0	0.6	1.4	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
#
# Program:         hmmscan
# Version:         3.2.1 (June 2018)
# Pipeline mode:   SCAN
# Query file:      /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halorubrum_lacusprofundi_ATCC_49239_uid58807/NC_012030.faa
# Target file:     /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm
# Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halorubrum_lacusprofundi_ATCC_49239_uid58807/NC_012030.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halorubrum_lacusprofundi_ATCC_49239_uid58807/NC_012030.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halorubrum_lacusprofundi_ATCC_49239_uid58807/NC_012030.faa 
# Current dir:     /oak/stanford/groups/akundaje/marinovg/genomes
# Date:            Mon Mar 25 13:17:58 2019
# [ok]