# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- AAA_22 PF13401.6 gi|222475683|ref|YP_002564204.1| - 3.5e-13 50.0 0.0 1.7e-12 47.8 0.0 2.0 2 0 0 2 2 2 1 AAA domain Cdc6_C PF09079.11 gi|222475683|ref|YP_002564204.1| - 3.3e-12 46.2 0.0 6.8e-12 45.2 0.0 1.5 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_16 PF13191.6 gi|222475683|ref|YP_002564204.1| - 7.6e-08 32.9 0.0 2.3e-06 28.1 0.0 2.5 2 1 0 2 2 2 1 AAA ATPase domain NACHT PF05729.12 gi|222475683|ref|YP_002564204.1| - 3.9e-06 26.9 0.0 8e-06 25.9 0.0 1.5 1 0 0 1 1 1 1 NACHT domain TniB PF05621.11 gi|222475683|ref|YP_002564204.1| - 5.6e-05 22.6 0.0 0.00017 21.1 0.0 1.7 2 0 0 2 2 2 1 Bacterial TniB protein AAA PF00004.29 gi|222475683|ref|YP_002564204.1| - 0.00044 20.7 0.0 0.0013 19.2 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|222475683|ref|YP_002564204.1| - 0.00046 20.2 0.0 0.0013 18.7 0.0 1.7 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea PadR PF03551.14 gi|222475683|ref|YP_002564204.1| - 0.0021 18.0 0.0 0.0048 16.8 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family AAA_32 PF13654.6 gi|222475683|ref|YP_002564204.1| - 0.0088 14.9 0.0 0.71 8.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|222475683|ref|YP_002564204.1| - 0.022 15.3 0.0 0.051 14.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain Sigma54_activat PF00158.26 gi|222475683|ref|YP_002564204.1| - 0.036 13.8 0.0 0.89 9.2 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain KAP_NTPase PF07693.14 gi|222475683|ref|YP_002564204.1| - 0.067 12.4 0.0 0.83 8.8 0.0 2.0 1 1 1 2 2 2 0 KAP family P-loop domain AAA_assoc_2 PF16193.5 gi|222475683|ref|YP_002564204.1| - 0.074 13.4 0.1 0.22 11.9 0.1 1.8 1 0 0 1 1 1 0 AAA C-terminal domain Sigma54_activ_2 PF14532.6 gi|222475683|ref|YP_002564204.1| - 0.09 12.9 0.0 0.7 10.0 0.0 2.3 1 1 1 2 2 2 0 Sigma-54 interaction domain PSD5 PF07637.11 gi|222475683|ref|YP_002564204.1| - 0.097 13.0 0.9 0.28 11.5 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1595) AAA_5 PF07728.14 gi|222475683|ref|YP_002564204.1| - 0.12 12.4 0.0 1.4 8.9 0.0 2.3 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_7 PF12775.7 gi|222475683|ref|YP_002564204.1| - 0.13 11.8 0.0 0.29 10.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region DDE_Tnp_1 PF01609.21 gi|222475684|ref|YP_002564205.1| - 0.031 13.9 0.1 0.085 12.5 0.1 1.7 1 1 0 1 1 1 0 Transposase DDE domain ThylakoidFormat PF11264.8 gi|222475685|ref|YP_002564206.1| - 0.032 13.9 0.1 0.036 13.8 0.1 1.0 1 0 0 1 1 1 0 Thylakoid formation protein Phage_integrase PF00589.22 gi|222475687|ref|YP_002564208.1| - 2.4e-10 40.5 0.0 6.3e-10 39.1 0.0 1.7 2 0 0 2 2 2 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|222475687|ref|YP_002564208.1| - 1.7e-05 25.0 6.0 0.0012 19.1 1.1 2.6 2 1 1 3 3 3 2 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 gi|222475687|ref|YP_002564208.1| - 0.00092 19.6 0.1 0.0024 18.3 0.1 1.8 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|222475687|ref|YP_002564208.1| - 0.01 16.1 0.1 0.036 14.4 0.0 1.8 2 0 0 2 2 2 0 Phage integrase SAM-like domain KfrA_N PF11740.8 gi|222475691|ref|YP_002564212.1| - 0.00088 19.9 6.9 0.00088 19.9 6.9 2.6 2 1 0 2 2 2 1 Plasmid replication region DNA-binding N-term DUF3584 PF12128.8 gi|222475691|ref|YP_002564212.1| - 0.03 11.8 16.7 0.04 11.5 16.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) MCM_N PF14551.6 gi|222475691|ref|YP_002564212.1| - 0.04 14.5 1.2 0.47 11.1 0.7 2.4 2 0 0 2 2 2 0 MCM N-terminal domain Exonuc_VII_L PF02601.15 gi|222475691|ref|YP_002564212.1| - 0.047 13.2 7.9 0.062 12.9 7.9 1.2 1 0 0 1 1 1 0 Exonuclease VII, large subunit Prominin PF05478.11 gi|222475691|ref|YP_002564212.1| - 0.21 9.5 4.3 0.26 9.2 4.3 1.1 1 0 0 1 1 1 0 Prominin DUF4407 PF14362.6 gi|222475691|ref|YP_002564212.1| - 0.23 10.8 17.2 0.59 9.4 17.3 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) Herpes_UL6 PF01763.16 gi|222475691|ref|YP_002564212.1| - 0.27 9.7 5.6 0.38 9.2 5.6 1.1 1 0 0 1 1 1 0 Herpesvirus UL6 like PilJ PF13675.6 gi|222475691|ref|YP_002564212.1| - 0.46 10.5 8.9 0.22 11.5 4.3 2.3 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term KELK PF15796.5 gi|222475691|ref|YP_002564212.1| - 0.69 10.4 15.8 0.56 10.7 12.9 2.3 1 1 1 2 2 2 0 KELK-motif containing domain of MRCK Ser/Thr protein kinase Cob_adeno_trans PF01923.18 gi|222475691|ref|YP_002564212.1| - 0.81 9.8 4.8 0.68 10.1 2.6 1.8 1 1 0 1 1 1 0 Cobalamin adenosyltransferase DUF4200 PF13863.6 gi|222475691|ref|YP_002564212.1| - 0.9 10.0 18.2 2.1 8.8 18.2 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4200) FapA PF03961.13 gi|222475691|ref|YP_002564212.1| - 0.97 8.0 11.1 2 6.9 11.1 1.5 1 1 0 1 1 1 0 Flagellar Assembly Protein A DUF465 PF04325.13 gi|222475691|ref|YP_002564212.1| - 1.2 9.2 10.6 0.62 10.2 1.8 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF465) Cnn_1N PF07989.11 gi|222475691|ref|YP_002564212.1| - 1.8 8.7 12.0 0.96 9.7 9.0 2.2 2 0 0 2 2 2 0 Centrosomin N-terminal motif 1 UPF0242 PF06785.11 gi|222475691|ref|YP_002564212.1| - 2.5 8.2 14.0 4.5 7.3 14.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus DUF16 PF01519.16 gi|222475691|ref|YP_002564212.1| - 2.7 8.5 9.7 7.6 7.1 9.7 1.9 1 1 0 1 1 1 0 Protein of unknown function DUF16 Peptidase_S64 PF08192.11 gi|222475691|ref|YP_002564212.1| - 4 5.8 9.0 5.1 5.4 9.0 1.1 1 0 0 1 1 1 0 Peptidase family S64 Aida_N PF08910.10 gi|222475691|ref|YP_002564212.1| - 5.5 7.4 7.0 1.4 9.3 0.3 2.7 2 1 1 3 3 2 0 Aida N-terminus V_ATPase_I PF01496.19 gi|222475691|ref|YP_002564212.1| - 6.3 4.6 6.8 8 4.2 6.8 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Muted PF14942.6 gi|222475691|ref|YP_002564212.1| - 6.4 7.1 18.7 8.8 6.7 14.0 2.3 1 1 2 3 3 3 0 Organelle biogenesis, Muted-like protein LPP PF04728.13 gi|222475691|ref|YP_002564212.1| - 6.5 7.2 10.9 2.8 8.4 0.3 2.7 3 0 0 3 3 2 0 Lipoprotein leucine-zipper FemAB PF02388.16 gi|222475691|ref|YP_002564212.1| - 7.4 5.3 8.3 8.1 5.2 7.0 1.6 1 1 0 1 1 1 0 FemAB family OmpH PF03938.14 gi|222475691|ref|YP_002564212.1| - 8 6.8 22.8 2 8.7 8.9 2.3 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) SNF2_N PF00176.23 gi|222475692|ref|YP_002564213.1| - 4.8e-35 120.9 0.1 1e-34 119.8 0.1 1.5 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.31 gi|222475692|ref|YP_002564213.1| - 1.4e-19 70.5 0.0 4.8e-19 68.7 0.0 2.0 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|222475692|ref|YP_002564213.1| - 1.4e-09 38.2 0.1 6.6e-09 36.0 0.0 2.0 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DSS1_SEM1 PF05160.13 gi|222475692|ref|YP_002564213.1| - 0.0029 17.6 0.7 0.013 15.6 0.7 2.1 1 0 0 1 1 1 1 DSS1/SEM1 family DUF5343 PF17278.2 gi|222475692|ref|YP_002564213.1| - 0.1 12.7 0.0 0.32 11.1 0.0 1.8 1 0 0 1 1 1 0 Family of unknown function (DUF5343) CoA_binding_2 PF13380.6 gi|222475692|ref|YP_002564213.1| - 0.13 12.8 0.1 1.1 9.7 0.1 2.3 2 0 0 2 2 2 0 CoA binding domain SdpI PF13630.6 gi|222475693|ref|YP_002564214.1| - 0.02 15.0 0.9 0.034 14.3 0.9 1.3 1 0 0 1 1 1 0 SdpI/YhfL protein family DUF499 PF04465.12 gi|222475694|ref|YP_002564215.1| - 1.1e-10 40.0 0.7 6.9e-06 24.1 0.1 2.5 2 1 0 2 2 2 2 Protein of unknown function (DUF499) ECH_2 PF16113.5 gi|222475694|ref|YP_002564215.1| - 0.067 12.7 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 Enoyl-CoA hydratase/isomerase hNIFK_binding PF12196.8 gi|222475695|ref|YP_002564216.1| - 0.031 13.8 0.3 0.059 12.9 0.3 1.5 1 0 0 1 1 1 0 FHA Ki67 binding domain of hNIFK Methyltransf_4 PF02390.17 gi|222475696|ref|YP_002564217.1| - 0.087 12.3 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase DUF1156 PF06634.12 gi|222475697|ref|YP_002564218.1| - 7.3e-09 35.6 0.0 1.7e-08 34.4 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1156) UPF0020 PF01170.18 gi|222475697|ref|YP_002564218.1| - 1.9e-07 30.9 0.0 0.028 14.1 0.0 2.5 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 MethyltransfD12 PF02086.15 gi|222475697|ref|YP_002564218.1| - 7.4e-05 22.5 0.2 0.00025 20.8 0.0 1.9 2 0 0 2 2 2 1 D12 class N6 adenine-specific DNA methyltransferase N6_N4_Mtase PF01555.18 gi|222475697|ref|YP_002564218.1| - 0.0002 21.1 0.0 0.032 14.0 0.0 2.3 2 0 0 2 2 2 1 DNA methylase Methyltransf_25 PF13649.6 gi|222475697|ref|YP_002564218.1| - 0.00053 20.7 0.0 4.2 8.1 0.0 3.7 3 0 0 3 3 3 2 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|222475697|ref|YP_002564218.1| - 0.015 14.9 0.0 6 6.5 0.0 2.3 2 0 0 2 2 2 0 Conserved hypothetical protein 95 DZR PF12773.7 gi|222475697|ref|YP_002564218.1| - 0.016 15.2 9.7 0.64 10.1 2.9 3.0 1 1 1 2 2 2 0 Double zinc ribbon Methyltransf_11 PF08241.12 gi|222475697|ref|YP_002564218.1| - 0.034 14.8 0.0 14 6.4 0.0 3.5 3 0 0 3 3 3 0 Methyltransferase domain DUF1488 PF07369.11 gi|222475697|ref|YP_002564218.1| - 0.12 12.3 0.1 0.47 10.5 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1488) UPF0515 PF15135.6 gi|222475697|ref|YP_002564218.1| - 0.28 10.5 2.8 0.53 9.6 2.8 1.4 1 0 0 1 1 1 0 Uncharacterised protein UPF0515 TF_Zn_Ribbon PF08271.12 gi|222475697|ref|YP_002564218.1| - 1.3 8.6 14.0 2.6 7.6 4.5 3.4 2 1 0 2 2 2 0 TFIIB zinc-binding HypA PF01155.19 gi|222475697|ref|YP_002564218.1| - 3.2 7.8 11.6 3.9 7.5 3.2 3.0 1 1 2 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TrmB PF01978.19 gi|222475699|ref|YP_002564220.1| - 0.0016 18.3 0.0 0.068 13.1 0.0 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB FAD_binding_2 PF00890.24 gi|222475699|ref|YP_002564220.1| - 0.06 12.4 0.1 0.065 12.3 0.1 1.1 1 0 0 1 1 1 0 FAD binding domain FaeA PF04703.12 gi|222475699|ref|YP_002564220.1| - 0.13 12.6 0.0 0.32 11.4 0.0 1.6 1 0 0 1 1 1 0 FaeA-like protein NPC1_N PF16414.5 gi|222475699|ref|YP_002564220.1| - 0.17 11.5 0.0 0.2 11.2 0.0 1.2 1 0 0 1 1 1 0 Niemann-Pick C1 N terminus McrBC PF10117.9 gi|222475703|ref|YP_002564224.1| - 6.2e-09 35.4 0.0 4.2e-08 32.7 0.0 1.9 1 1 0 1 1 1 1 McrBC 5-methylcytosine restriction system component DUF3268 PF11672.8 gi|222475707|ref|YP_002564228.1| - 0.064 13.6 1.6 0.16 12.3 0.2 1.9 2 0 0 2 2 2 0 zinc-finger-containing domain Ribosomal_L32p PF01783.23 gi|222475707|ref|YP_002564228.1| - 0.073 13.3 2.7 0.58 10.5 0.1 2.5 1 1 1 2 2 2 0 Ribosomal L32p protein family MazE_antitoxin PF04014.18 gi|222475708|ref|YP_002564229.1| - 0.11 12.5 0.0 0.2 11.6 0.0 1.5 1 1 0 1 1 1 0 Antidote-toxin recognition MazE, bacterial antitoxin TrmB PF01978.19 gi|222475709|ref|YP_002564230.1| - 1.6e-07 31.1 0.0 3.2e-07 30.1 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|222475709|ref|YP_002564230.1| - 6.5e-06 25.9 0.0 2.4e-05 24.0 0.0 2.0 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|222475709|ref|YP_002564230.1| - 0.008 16.1 0.0 0.014 15.3 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|222475709|ref|YP_002564230.1| - 0.018 15.1 0.8 0.04 14.0 0.2 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain PIN_12 PF16289.5 gi|222475710|ref|YP_002564231.1| - 0.011 16.2 0.0 4.5 7.7 0.0 2.1 2 0 0 2 2 2 0 PIN domain PIN_4 PF13638.6 gi|222475710|ref|YP_002564231.1| - 0.079 13.2 0.0 0.15 12.3 0.0 1.4 1 1 0 1 1 1 0 PIN domain DUF4876 PF16215.5 gi|222475710|ref|YP_002564231.1| - 0.25 11.3 1.2 0.34 10.9 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF4876) DUF3482 PF11981.8 gi|222475711|ref|YP_002564232.1| - 0.2 11.0 10.8 0.23 10.8 10.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3482) Bacteriocin_IIc PF10439.9 gi|222475711|ref|YP_002564232.1| - 0.43 10.7 13.0 0.56 10.4 13.0 1.2 1 0 0 1 1 1 0 Bacteriocin class II with double-glycine leader peptide Fusion_gly PF00523.18 gi|222475711|ref|YP_002564232.1| - 0.55 8.4 3.2 4.9 5.3 0.3 2.0 2 0 0 2 2 2 0 Fusion glycoprotein F0 ATPase_gene1 PF09527.10 gi|222475711|ref|YP_002564232.1| - 3 8.1 12.7 9.9 6.4 12.8 1.7 1 1 0 1 1 1 0 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter Gly-zipper_YMGG PF13441.6 gi|222475711|ref|YP_002564232.1| - 4.7 7.0 22.1 18 5.2 22.3 1.7 1 1 0 1 1 1 0 YMGG-like Gly-zipper DUF2273 PF10031.9 gi|222475711|ref|YP_002564232.1| - 6.9 6.8 12.0 10 6.2 12.0 1.2 1 0 0 1 1 1 0 Small integral membrane protein (DUF2273) Usp PF00582.26 gi|222475713|ref|YP_002564234.1| - 5.3e-31 108.0 0.2 6.1e-31 107.8 0.2 1.1 1 0 0 1 1 1 1 Universal stress protein family DDE_Tnp_1 PF01609.21 gi|222475714|ref|YP_002564235.1| - 4.1e-15 56.0 3.9 1.2e-14 54.5 3.9 1.7 1 1 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|222475714|ref|YP_002564235.1| - 0.00052 20.0 0.1 0.0015 18.5 0.1 1.8 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_2 PF13586.6 gi|222475714|ref|YP_002564235.1| - 0.049 14.0 0.9 0.098 13.0 0.3 1.8 2 0 0 2 2 2 0 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|222475715|ref|YP_002564236.1| - 0.031 13.9 0.1 0.085 12.5 0.1 1.7 1 1 0 1 1 1 0 Transposase DDE domain AAA_15 PF13175.6 gi|222475716|ref|YP_002564237.1| - 4.9e-32 112.0 0.9 8e-32 111.4 0.9 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 gi|222475716|ref|YP_002564237.1| - 3.3e-15 56.7 3.7 6.6e-11 42.6 0.5 2.5 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|222475716|ref|YP_002564237.1| - 4e-05 23.2 0.0 7.5e-05 22.3 0.0 1.5 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF2813 PF11398.8 gi|222475716|ref|YP_002564237.1| - 0.004 16.5 0.1 0.12 11.7 0.0 2.3 2 1 0 2 2 2 1 Protein of unknown function (DUF2813) RNA_helicase PF00910.22 gi|222475716|ref|YP_002564237.1| - 0.056 13.8 0.0 0.12 12.7 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_23 PF13476.6 gi|222475716|ref|YP_002564237.1| - 0.21 12.1 12.1 0.37 11.3 11.4 1.9 1 1 0 1 1 1 0 AAA domain KTSC PF13619.6 gi|222475717|ref|YP_002564238.1| - 3.4e-24 84.4 0.9 4.6e-24 84.0 0.8 1.3 1 1 0 1 1 1 1 KTSC domain UCH_N PF16674.5 gi|222475717|ref|YP_002564238.1| - 0.088 12.7 0.0 0.17 11.8 0.0 1.5 1 1 1 2 2 2 0 N-terminal of ubiquitin carboxyl-terminal hydrolase 37 DUF2797 PF10977.8 gi|222475718|ref|YP_002564239.1| - 4.7e-54 183.7 0.0 5.7e-54 183.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2797) Piwi PF02171.17 gi|222475719|ref|YP_002564240.1| - 9.7e-16 57.9 0.0 1.5e-15 57.2 0.0 1.2 1 0 0 1 1 1 1 Piwi domain Ago_PAZ PF18309.1 gi|222475719|ref|YP_002564240.1| - 0.12 13.0 1.3 0.54 10.9 0.1 2.7 3 0 0 3 3 3 0 Argonaute PAZ domain UPF0236 PF06782.11 gi|222475720|ref|YP_002564241.1| - 9.7e-06 24.5 0.0 0.00026 19.8 0.0 2.1 2 0 0 2 2 2 2 Uncharacterised protein family (UPF0236) Transposase_mut PF00872.18 gi|222475720|ref|YP_002564241.1| - 0.00037 19.4 0.2 1 8.1 0.0 2.9 2 2 0 2 2 2 2 Transposase, Mutator family DUF87 PF01935.17 gi|222475721|ref|YP_002564242.1| - 9.9e-10 38.9 0.0 2.7e-09 37.5 0.0 1.7 1 0 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|222475721|ref|YP_002564242.1| - 4.9e-05 22.1 0.3 0.0091 14.6 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) AAA_10 PF12846.7 gi|222475721|ref|YP_002564242.1| - 0.015 14.2 0.0 2.2 7.1 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain NurA PF09376.10 gi|222475722|ref|YP_002564243.1| - 1.3e-05 25.0 0.0 0.00015 21.6 0.0 2.5 1 1 0 1 1 1 1 NurA domain AAA_23 PF13476.6 gi|222475723|ref|YP_002564244.1| - 2.8e-24 86.7 3.2 2.8e-24 86.7 3.2 6.2 1 1 2 3 3 1 1 AAA domain Spc7 PF08317.11 gi|222475723|ref|YP_002564244.1| - 2.9e-14 52.7 97.9 1.5e-05 24.1 14.7 5.3 2 2 3 5 5 5 4 Spc7 kinetochore protein Laminin_II PF06009.12 gi|222475723|ref|YP_002564244.1| - 1.5e-06 28.3 57.4 0.0019 18.2 2.8 7.3 3 3 4 7 7 7 5 Laminin Domain II AAA_15 PF13175.6 gi|222475723|ref|YP_002564244.1| - 2.2e-06 27.7 17.3 2.2e-06 27.7 17.3 4.2 1 1 2 3 3 2 1 AAA ATPase domain AAA_13 PF13166.6 gi|222475723|ref|YP_002564244.1| - 5.3e-06 25.4 80.6 0.001 17.8 14.7 5.1 2 1 3 5 5 5 5 AAA domain Baculo_PEP_C PF04513.12 gi|222475723|ref|YP_002564244.1| - 6.3e-05 23.0 13.8 2.9 7.9 0.3 5.3 3 2 0 4 4 4 2 Baculovirus polyhedron envelope protein, PEP, C terminus HsbA PF12296.8 gi|222475723|ref|YP_002564244.1| - 7.2e-05 23.2 0.2 3.8 8.0 0.1 4.9 4 1 1 5 5 5 1 Hydrophobic surface binding protein A CENP-F_leu_zip PF10473.9 gi|222475723|ref|YP_002564244.1| - 0.00052 20.1 95.8 0.0098 15.9 18.7 6.4 3 2 3 6 6 6 3 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 T3SSipB PF16535.5 gi|222475723|ref|YP_002564244.1| - 0.0019 18.7 5.5 0.0019 18.7 5.5 6.3 2 2 3 6 6 6 1 Type III cell invasion protein SipB TPR_MLP1_2 PF07926.12 gi|222475723|ref|YP_002564244.1| - 0.0025 17.9 13.0 0.0025 17.9 13.0 8.2 3 2 0 5 5 4 1 TPR/MLP1/MLP2-like protein Atg14 PF10186.9 gi|222475723|ref|YP_002564244.1| - 0.0028 16.8 7.8 0.0028 16.8 7.8 5.6 1 1 2 4 4 3 1 Vacuolar sorting 38 and autophagy-related subunit 14 AAA_27 PF13514.6 gi|222475723|ref|YP_002564244.1| - 0.0033 17.0 0.1 0.0033 17.0 0.1 6.1 5 2 1 7 7 7 1 AAA domain AAA_29 PF13555.6 gi|222475723|ref|YP_002564244.1| - 0.0045 16.7 0.1 0.0089 15.7 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF2730 PF10805.8 gi|222475723|ref|YP_002564244.1| - 0.0049 16.9 1.3 0.0049 16.9 1.3 7.2 4 2 5 9 9 9 1 Protein of unknown function (DUF2730) COG2 PF06148.11 gi|222475723|ref|YP_002564244.1| - 0.01 15.9 2.0 0.01 15.9 2.0 8.0 3 2 4 8 8 8 0 COG (conserved oligomeric Golgi) complex component, COG2 FliJ PF02050.16 gi|222475723|ref|YP_002564244.1| - 0.014 15.6 0.9 0.014 15.6 0.9 7.4 3 3 2 6 6 5 0 Flagellar FliJ protein ABC_tran PF00005.27 gi|222475723|ref|YP_002564244.1| - 0.034 14.7 0.0 0.034 14.7 0.0 4.9 2 1 0 2 2 1 0 ABC transporter AAA_21 PF13304.6 gi|222475723|ref|YP_002564244.1| - 0.076 12.8 0.0 0.076 12.8 0.0 3.8 3 2 0 3 3 2 0 AAA domain, putative AbiEii toxin, Type IV TA system Snapin_Pallidin PF14712.6 gi|222475723|ref|YP_002564244.1| - 0.19 12.2 48.8 0.52 10.8 0.6 8.1 5 3 4 9 9 8 0 Snapin/Pallidin DUF3584 PF12128.8 gi|222475723|ref|YP_002564244.1| - 0.2 9.2 101.1 0.0054 14.3 46.2 3.8 2 1 2 4 4 4 0 Protein of unknown function (DUF3584) DUF1664 PF07889.12 gi|222475723|ref|YP_002564244.1| - 0.24 11.4 55.8 0.043 13.9 1.9 8.3 3 2 6 10 10 10 0 Protein of unknown function (DUF1664) Fib_alpha PF08702.10 gi|222475723|ref|YP_002564244.1| - 0.45 10.7 61.3 0.056 13.6 1.1 7.1 2 2 4 7 7 7 0 Fibrinogen alpha/beta chain family MscS_porin PF12795.7 gi|222475723|ref|YP_002564244.1| - 1.7 8.2 77.2 0.16 11.5 11.9 6.7 2 2 3 6 6 6 0 Mechanosensitive ion channel porin domain DUF4407 PF14362.6 gi|222475723|ref|YP_002564244.1| - 2.1 7.6 78.4 0.023 14.0 13.7 5.6 1 1 3 4 4 3 0 Domain of unknown function (DUF4407) NPV_P10 PF05531.12 gi|222475723|ref|YP_002564244.1| - 2.8 8.4 42.8 4.7 7.7 0.9 8.4 4 3 4 9 9 8 0 Nucleopolyhedrovirus P10 protein DUF812 PF05667.11 gi|222475723|ref|YP_002564244.1| - 4.1 6.2 82.4 22 3.8 17.8 4.7 1 1 2 3 3 3 0 Protein of unknown function (DUF812) FPP PF05911.11 gi|222475723|ref|YP_002564244.1| - 6.1 4.9 80.5 0.0066 14.7 10.8 4.1 1 1 3 4 4 4 0 Filament-like plant protein, long coiled-coil Metallophos_2 PF12850.7 gi|222475724|ref|YP_002564245.1| - 1.1e-11 45.2 0.3 2.4e-11 44.1 0.3 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|222475724|ref|YP_002564245.1| - 1.2e-11 45.5 0.3 2.2e-11 44.6 0.3 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase PLDc_2 PF13091.6 gi|222475725|ref|YP_002564246.1| - 1.4e-05 25.0 0.0 2.8e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 PLD-like domain RE_NgoFVII PF09565.10 gi|222475725|ref|YP_002564246.1| - 0.00016 21.1 0.0 0.0003 20.2 0.0 1.3 1 0 0 1 1 1 1 NgoFVII restriction endonuclease Tyr-DNA_phospho PF06087.12 gi|222475725|ref|YP_002564246.1| - 0.058 12.3 0.0 0.084 11.8 0.0 1.2 1 0 0 1 1 1 0 Tyrosyl-DNA phosphodiesterase GerE PF00196.19 gi|222475726|ref|YP_002564247.1| - 4.5e-05 22.9 0.1 0.00012 21.5 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family ADP_ribosyl_GH PF03747.14 gi|222475727|ref|YP_002564248.1| - 2.7e-72 244.0 5.8 3.2e-72 243.7 5.8 1.1 1 0 0 1 1 1 1 ADP-ribosylglycohydrolase Gly-zipper_YMGG PF13441.6 gi|222475727|ref|YP_002564248.1| - 0.51 10.1 4.6 9.5 6.1 1.3 2.5 2 0 0 2 2 2 0 YMGG-like Gly-zipper EFG_II PF14492.6 gi|222475728|ref|YP_002564249.1| - 0.053 13.6 0.1 0.28 11.3 0.1 2.1 2 0 0 2 2 2 0 Elongation Factor G, domain II MarR_2 PF12802.7 gi|222475730|ref|YP_002564251.1| - 8.8e-07 28.7 0.0 1.7e-06 27.8 0.0 1.5 1 1 0 1 1 1 1 MarR family PaaX PF07848.12 gi|222475730|ref|YP_002564251.1| - 0.00047 20.3 0.0 0.00079 19.6 0.0 1.3 1 0 0 1 1 1 1 PaaX-like protein HTH_20 PF12840.7 gi|222475730|ref|YP_002564251.1| - 0.0035 17.4 0.0 0.0067 16.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|222475730|ref|YP_002564251.1| - 0.015 14.9 0.0 0.03 13.9 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Penicillinase_R PF03965.16 gi|222475730|ref|YP_002564251.1| - 0.015 15.6 0.0 0.017 15.4 0.0 1.2 1 0 0 1 1 1 0 Penicillinase repressor HTH_11 PF08279.12 gi|222475730|ref|YP_002564251.1| - 0.019 14.9 0.0 0.041 13.8 0.0 1.5 1 0 0 1 1 1 0 HTH domain MarR PF01047.22 gi|222475730|ref|YP_002564251.1| - 0.022 14.7 0.0 0.047 13.6 0.0 1.5 1 0 0 1 1 1 0 MarR family DUF4423 PF14394.6 gi|222475730|ref|YP_002564251.1| - 0.03 14.0 0.0 0.046 13.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_27 PF13463.6 gi|222475730|ref|YP_002564251.1| - 0.035 14.6 0.0 0.062 13.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF2470 PF10615.9 gi|222475730|ref|YP_002564251.1| - 0.049 14.3 0.0 0.11 13.1 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2470) Snf7 PF03357.21 gi|222475730|ref|YP_002564251.1| - 0.062 12.9 0.7 0.075 12.6 0.7 1.2 1 0 0 1 1 1 0 Snf7 HTH_5 PF01022.20 gi|222475730|ref|YP_002564251.1| - 0.068 13.0 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|222475730|ref|YP_002564251.1| - 0.08 12.8 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 gi|222475730|ref|YP_002564251.1| - 0.081 13.1 0.0 0.14 12.4 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 gi|222475730|ref|YP_002564251.1| - 0.17 12.2 0.0 0.29 11.5 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator Phage_integrase PF00589.22 gi|222475732|ref|YP_002564253.1| - 1.3e-07 31.5 0.0 3.4e-07 30.2 0.0 1.6 2 0 0 2 2 2 1 Phage integrase family DDE_Tnp_1 PF01609.21 gi|222475733|ref|YP_002564254.1| - 0.027 14.1 0.1 0.14 11.8 0.0 2.1 1 1 0 1 1 1 0 Transposase DDE domain Phage_int_SAM_5 PF13102.6 gi|222475734|ref|YP_002564255.1| - 0.081 13.3 0.6 23 5.4 0.1 3.0 4 0 0 4 4 4 0 Phage integrase SAM-like domain HxlR PF01638.17 gi|222475735|ref|YP_002564256.1| - 0.0038 17.0 0.0 0.0068 16.2 0.0 1.4 1 1 0 1 1 1 1 HxlR-like helix-turn-helix HTH_5 PF01022.20 gi|222475735|ref|YP_002564256.1| - 0.0084 16.0 0.0 0.029 14.2 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family ATPase_2 PF01637.18 gi|222475736|ref|YP_002564257.1| - 2.2e-23 83.4 0.0 2.6e-22 79.9 0.0 2.1 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea DUF234 PF03008.14 gi|222475736|ref|YP_002564257.1| - 3.4e-18 65.9 0.0 6.6e-18 65.0 0.0 1.4 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function AAA_14 PF13173.6 gi|222475736|ref|YP_002564257.1| - 1.1e-06 28.7 0.0 2e-06 27.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|222475736|ref|YP_002564257.1| - 1.2e-05 25.8 0.3 0.00012 22.5 0.3 2.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|222475736|ref|YP_002564257.1| - 5.4e-05 23.5 0.0 0.00012 22.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain MarR_2 PF12802.7 gi|222475736|ref|YP_002564257.1| - 0.0018 18.1 0.0 0.0044 16.9 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|222475736|ref|YP_002564257.1| - 0.004 16.7 0.1 0.0077 15.8 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|222475736|ref|YP_002564257.1| - 0.0075 16.1 0.0 0.018 14.9 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|222475736|ref|YP_002564257.1| - 0.03 14.1 0.0 0.063 13.1 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|222475736|ref|YP_002564257.1| - 0.077 12.9 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|222475736|ref|YP_002564257.1| - 0.29 11.6 1.1 2.1 8.9 0.1 2.4 2 0 0 2 2 2 0 Winged helix DNA-binding domain GCIP PF13324.6 gi|222475737|ref|YP_002564258.1| - 0.011 15.4 0.1 0.014 15.0 0.1 1.3 1 1 0 1 1 1 0 Grap2 and cyclin-D-interacting Fe_dep_repress PF01325.19 gi|222475737|ref|YP_002564258.1| - 0.096 12.9 0.0 0.16 12.2 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF3826 PF12875.7 gi|222475737|ref|YP_002564258.1| - 0.11 12.6 0.1 0.23 11.6 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3826) Phage_integrase PF00589.22 gi|222475741|ref|YP_002564262.1| - 2.6e-23 82.7 0.0 3.3e-23 82.4 0.0 1.0 1 0 0 1 1 1 1 Phage integrase family DUF4696 PF15767.5 gi|222475741|ref|YP_002564262.1| - 0.075 11.6 0.0 0.093 11.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4696) HNH PF01844.23 gi|222475743|ref|YP_002564264.1| - 1.5e-09 37.9 2.5 3.1e-09 36.8 2.5 1.6 1 0 0 1 1 1 1 HNH endonuclease PHD PF00628.29 gi|222475743|ref|YP_002564264.1| - 0.013 15.4 1.5 0.059 13.3 0.2 2.3 2 0 0 2 2 2 0 PHD-finger HNH_2 PF13391.6 gi|222475743|ref|YP_002564264.1| - 0.2 11.8 2.3 0.87 9.8 2.3 2.0 1 1 0 1 1 1 0 HNH endonuclease RNase_H_2 PF13482.6 gi|222475744|ref|YP_002564265.1| - 7.6e-06 26.0 0.0 0.00012 22.1 0.0 2.3 1 1 0 1 1 1 1 RNase_H superfamily EABR PF12180.8 gi|222475747|ref|YP_002564268.1| - 0.092 12.4 0.2 0.2 11.3 0.2 1.5 1 0 0 1 1 1 0 TSG101 and ALIX binding domain of CEP55 RAMPs PF03787.15 gi|222475747|ref|YP_002564268.1| - 0.16 12.0 0.0 0.24 11.4 0.0 1.2 1 0 0 1 1 1 0 RAMP superfamily DZR PF12773.7 gi|222475748|ref|YP_002564269.1| - 0.045 13.8 0.1 0.094 12.8 0.1 1.5 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|222475748|ref|YP_002564269.1| - 0.17 11.6 2.1 1.4 8.7 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain FaeA PF04703.12 gi|222475749|ref|YP_002564270.1| - 0.00072 19.9 0.0 0.00097 19.5 0.0 1.2 1 0 0 1 1 1 1 FaeA-like protein TBP PF00352.21 gi|222475750|ref|YP_002564271.1| - 1.9e-20 72.6 0.0 2.4e-20 72.3 0.0 1.1 1 0 0 1 1 1 1 Transcription factor TFIID (or TATA-binding protein, TBP) DDE_Tnp_1 PF01609.21 gi|222475751|ref|YP_002564272.1| - 0.031 13.9 0.1 0.087 12.5 0.1 1.7 1 1 0 1 1 1 0 Transposase DDE domain DUF5305 PF17231.2 gi|222475753|ref|YP_002564274.1| - 1.7e-23 83.2 2.3 1.7e-23 83.2 2.3 1.7 2 0 0 2 2 2 1 Family of unknown function (DUF5305) DUF1072 PF06380.11 gi|222475753|ref|YP_002564274.1| - 0.25 11.3 0.1 0.25 11.3 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1072) Peptidase_S24 PF00717.23 gi|222475754|ref|YP_002564275.1| - 0.00026 20.9 0.1 0.0006 19.7 0.1 1.6 1 0 0 1 1 1 1 Peptidase S24-like PKD PF00801.20 gi|222475755|ref|YP_002564276.1| - 1.5e-72 239.4 68.5 3.2e-13 49.3 6.1 6.6 6 0 0 6 6 6 6 PKD domain DUF4625 PF15418.6 gi|222475755|ref|YP_002564276.1| - 2.5e-08 34.2 10.1 0.2 11.9 0.1 6.2 6 0 0 6 6 6 3 Domain of unknown function (DUF4625) Y_Y_Y PF07495.13 gi|222475755|ref|YP_002564276.1| - 9.5e-08 31.9 10.5 0.051 13.5 0.1 6.4 6 0 0 6 6 6 3 Y_Y_Y domain BiPBP_C PF06832.12 gi|222475755|ref|YP_002564276.1| - 2.3e-07 30.8 1.8 4.1 7.5 0.0 6.2 4 1 2 6 6 6 2 Penicillin-Binding Protein C-terminus Family DUF5011 PF16403.5 gi|222475755|ref|YP_002564276.1| - 3.4e-05 23.9 37.8 0.098 12.8 0.9 7.0 7 0 0 7 7 7 5 Domain of unknown function (DUF5011) DUF4399 PF14347.6 gi|222475755|ref|YP_002564276.1| - 0.00028 21.2 0.7 13 6.2 0.1 4.6 4 0 0 4 4 4 1 Domain of unknown function (DUF4399) ChitinaseA_N PF08329.10 gi|222475755|ref|YP_002564276.1| - 0.00037 20.1 6.8 7.9 6.1 0.0 5.6 5 1 1 6 6 6 2 Chitinase A, N-terminal domain Putative_G5P PF17426.2 gi|222475755|ref|YP_002564276.1| - 0.002 18.2 0.1 13 5.9 0.0 5.1 6 0 0 6 6 6 1 Putative Gamma DNA binding protein G5P Big_3_4 PF13754.6 gi|222475755|ref|YP_002564276.1| - 0.0039 16.9 0.1 2.2 8.1 0.0 4.1 5 0 0 5 5 5 1 Domain of unknown function P2_Phage_GpR PF06891.11 gi|222475755|ref|YP_002564276.1| - 0.011 15.8 0.0 25 4.9 0.0 3.7 4 0 0 4 4 4 0 P2 phage tail completion protein R (GpR) DDE_Tnp_1 PF01609.21 gi|222475757|ref|YP_002564278.1| - 0.031 13.9 0.1 0.085 12.5 0.1 1.7 1 1 0 1 1 1 0 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|222475758|ref|YP_002564279.1| - 2.1e-06 27.5 0.3 5.6e-05 22.9 0.0 2.3 2 0 0 2 2 2 2 Transposase DDE domain Phage_integrase PF00589.22 gi|222475759|ref|YP_002564280.1| - 7.3e-05 22.6 0.0 0.00013 21.8 0.0 1.4 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|222475759|ref|YP_002564280.1| - 0.037 14.3 2.3 5.9 7.3 0.0 3.1 3 0 0 3 3 3 0 Phage integrase, N-terminal SAM-like domain TarH PF02203.15 gi|222475759|ref|YP_002564280.1| - 0.15 12.0 2.1 1.6 8.6 2.1 2.2 1 1 0 1 1 1 0 Tar ligand binding domain homologue HTH_34 PF13601.6 gi|222475760|ref|YP_002564281.1| - 0.074 13.2 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain AAA_31 PF13614.6 gi|222475761|ref|YP_002564282.1| - 3.9e-20 72.5 0.0 5.4e-20 72.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|222475761|ref|YP_002564282.1| - 5.5e-13 49.1 0.0 8e-13 48.6 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 gi|222475761|ref|YP_002564282.1| - 7.1e-09 35.3 0.3 0.0016 17.7 0.0 2.2 2 0 0 2 2 2 2 ATPase MipZ CBP_BcsQ PF06564.12 gi|222475761|ref|YP_002564282.1| - 1.2e-05 24.9 0.0 0.0054 16.2 0.1 2.1 2 0 0 2 2 2 2 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 gi|222475761|ref|YP_002564282.1| - 0.0029 16.8 0.3 0.0068 15.6 0.1 1.7 3 0 0 3 3 3 1 Anion-transporting ATPase ParA PF10609.9 gi|222475761|ref|YP_002564282.1| - 0.0038 16.7 0.3 0.0081 15.6 0.1 1.6 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase MYCBPAP PF14646.6 gi|222475761|ref|YP_002564282.1| - 0.037 13.0 0.0 0.055 12.4 0.0 1.2 1 0 0 1 1 1 0 MYCBP-associated protein family SRP54 PF00448.22 gi|222475761|ref|YP_002564282.1| - 0.067 12.8 0.1 2.2 7.8 0.2 2.4 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Cdc6_C PF09079.11 gi|222475762|ref|YP_002564283.1| - 4.8e-18 64.9 0.0 1.1e-17 63.8 0.0 1.6 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|222475762|ref|YP_002564283.1| - 2.6e-11 44.0 0.1 8.9e-11 42.2 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|222475762|ref|YP_002564283.1| - 2.6e-09 37.7 2.0 7.5e-09 36.2 0.2 2.5 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|222475762|ref|YP_002564283.1| - 2.4e-06 28.0 0.3 8.7e-06 26.2 0.3 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.13 gi|222475762|ref|YP_002564283.1| - 1.5e-05 24.3 0.0 2.9e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) NACHT PF05729.12 gi|222475762|ref|YP_002564283.1| - 6.7e-05 22.9 0.0 0.00011 22.2 0.0 1.3 1 0 0 1 1 1 1 NACHT domain Sigma54_activat PF00158.26 gi|222475762|ref|YP_002564283.1| - 7.3e-05 22.5 0.3 0.0002 21.1 0.1 1.8 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_5 PF07728.14 gi|222475762|ref|YP_002564283.1| - 0.00091 19.2 0.1 0.0042 17.1 0.0 2.2 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) Sigma54_activ_2 PF14532.6 gi|222475762|ref|YP_002564283.1| - 0.0016 18.6 0.1 0.0046 17.1 0.0 1.8 1 1 1 2 2 2 1 Sigma-54 interaction domain ATPase_2 PF01637.18 gi|222475762|ref|YP_002564283.1| - 0.0016 18.4 1.0 0.0049 16.8 0.0 2.1 3 0 0 3 3 2 1 ATPase domain predominantly from Archaea TniB PF05621.11 gi|222475762|ref|YP_002564283.1| - 0.0036 16.7 0.0 0.0079 15.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial TniB protein RNA_helicase PF00910.22 gi|222475762|ref|YP_002564283.1| - 0.015 15.7 0.0 0.051 14.0 0.0 2.0 2 0 0 2 2 2 0 RNA helicase AAA_7 PF12775.7 gi|222475762|ref|YP_002564283.1| - 0.022 14.3 0.1 0.048 13.2 0.1 1.6 1 1 0 1 1 1 0 P-loop containing dynein motor region Rad51 PF08423.11 gi|222475762|ref|YP_002564283.1| - 0.026 13.8 0.0 0.046 13.0 0.0 1.4 1 0 0 1 1 1 0 Rad51 AAA_32 PF13654.6 gi|222475762|ref|YP_002564283.1| - 0.03 13.1 2.5 1.3 7.7 1.2 2.2 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|222475762|ref|YP_002564283.1| - 0.041 14.4 0.2 0.11 13.0 0.2 2.0 1 1 0 1 1 1 0 ABC transporter AAA_assoc_2 PF16193.5 gi|222475762|ref|YP_002564283.1| - 0.066 13.6 0.6 0.19 12.1 0.3 1.9 1 1 0 1 1 1 0 AAA C-terminal domain AAA_24 PF13479.6 gi|222475762|ref|YP_002564283.1| - 0.066 12.9 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain RFX_DNA_binding PF02257.15 gi|222475762|ref|YP_002564283.1| - 0.082 13.5 0.0 0.17 12.5 0.0 1.5 1 0 0 1 1 1 0 RFX DNA-binding domain TsaE PF02367.17 gi|222475762|ref|YP_002564283.1| - 0.087 12.8 0.0 0.49 10.4 0.0 2.0 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE KAP_NTPase PF07693.14 gi|222475762|ref|YP_002564283.1| - 0.11 11.8 2.5 0.64 9.2 0.0 2.2 2 1 1 3 3 3 0 KAP family P-loop domain PhoH PF02562.16 gi|222475762|ref|YP_002564283.1| - 0.11 12.0 0.3 10 5.5 0.0 2.4 2 0 0 2 2 2 0 PhoH-like protein DEAD PF00270.29 gi|222475762|ref|YP_002564283.1| - 0.17 11.6 1.8 15 5.3 1.8 2.6 1 1 0 1 1 1 0 DEAD/DEAH box helicase MarR_2 PF12802.7 gi|222475764|ref|YP_002564285.1| - 2.9e-14 52.7 1.2 1.7e-08 34.2 0.6 2.6 2 0 0 2 2 2 2 MarR family TrmB PF01978.19 gi|222475764|ref|YP_002564285.1| - 1.9e-09 37.3 0.1 0.00036 20.4 0.0 2.6 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|222475764|ref|YP_002564285.1| - 9.1e-09 34.7 0.1 0.0031 17.0 0.0 2.6 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|222475764|ref|YP_002564285.1| - 1.6e-07 31.0 0.1 0.029 14.2 0.0 2.9 3 0 0 3 3 2 2 IclR helix-turn-helix domain Rrf2 PF02082.20 gi|222475764|ref|YP_002564285.1| - 1.9e-07 31.4 0.0 0.016 15.5 0.0 2.7 2 0 0 2 2 2 2 Transcriptional regulator HTH_27 PF13463.6 gi|222475764|ref|YP_002564285.1| - 5.1e-07 30.1 0.6 4.9e-06 26.9 0.3 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR PF01047.22 gi|222475764|ref|YP_002564285.1| - 6.1e-06 26.1 0.0 0.0044 16.9 0.0 2.5 2 0 0 2 2 2 2 MarR family HTH_29 PF13551.6 gi|222475764|ref|YP_002564285.1| - 1e-05 25.5 0.3 0.085 12.9 0.0 2.5 2 0 0 2 2 2 2 Winged helix-turn helix HTH_Crp_2 PF13545.6 gi|222475764|ref|YP_002564285.1| - 1.1e-05 25.3 0.0 0.011 15.7 0.0 2.6 2 0 0 2 2 2 2 Crp-like helix-turn-helix domain HTH_20 PF12840.7 gi|222475764|ref|YP_002564285.1| - 2.4e-05 24.3 0.3 0.089 12.9 0.2 2.6 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_23 PF13384.6 gi|222475764|ref|YP_002564285.1| - 5.9e-05 22.7 0.0 0.21 11.4 0.0 2.7 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 gi|222475764|ref|YP_002564285.1| - 0.00012 22.1 0.1 0.12 12.5 0.0 3.5 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|222475764|ref|YP_002564285.1| - 0.00072 19.4 0.0 1.2 9.1 0.0 2.6 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family GntR PF00392.21 gi|222475764|ref|YP_002564285.1| - 0.0014 18.2 0.0 1.8 8.3 0.0 3.2 3 0 0 3 3 3 1 Bacterial regulatory proteins, gntR family Crp PF00325.20 gi|222475764|ref|YP_002564285.1| - 0.0019 17.8 0.3 0.084 12.5 0.1 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, crp family DUF746 PF05344.11 gi|222475764|ref|YP_002564285.1| - 0.013 15.3 0.0 0.048 13.5 0.0 2.0 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) Penicillinase_R PF03965.16 gi|222475764|ref|YP_002564285.1| - 0.018 15.4 0.0 1 9.8 0.0 2.6 1 1 0 2 2 2 0 Penicillinase repressor HTH_38 PF13936.6 gi|222475764|ref|YP_002564285.1| - 0.02 14.7 1.2 1.4 8.7 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain LZ_Tnp_IS481 PF13011.6 gi|222475764|ref|YP_002564285.1| - 0.023 15.2 0.1 0.058 13.9 0.0 1.7 1 1 0 1 1 1 0 leucine-zipper of insertion element IS481 T6SS_VasJ PF16989.5 gi|222475764|ref|YP_002564285.1| - 0.04 13.4 0.0 0.12 11.9 0.0 1.7 2 0 0 2 2 2 0 Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ RPA_C PF08784.11 gi|222475764|ref|YP_002564285.1| - 0.19 12.4 0.0 0.45 11.2 0.0 1.6 1 0 0 1 1 1 0 Replication protein A C terminal HTH_32 PF13565.6 gi|222475764|ref|YP_002564285.1| - 0.27 11.9 1.4 3.7 8.2 0.0 3.0 3 0 0 3 3 3 0 Homeodomain-like domain DUF2513 PF10711.9 gi|222475765|ref|YP_002564286.1| - 3.1e-05 24.2 0.0 5.4e-05 23.4 0.0 1.4 1 1 0 1 1 1 1 Hypothetical protein (DUF2513) PadR PF03551.14 gi|222475765|ref|YP_002564286.1| - 6.4e-05 22.8 0.0 0.00011 22.0 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family FUR PF01475.19 gi|222475765|ref|YP_002564286.1| - 0.00014 22.0 0.1 0.0003 20.9 0.0 1.6 2 0 0 2 2 2 1 Ferric uptake regulator family HTH_11 PF08279.12 gi|222475765|ref|YP_002564286.1| - 0.00049 20.0 0.0 0.00098 19.0 0.0 1.6 2 0 0 2 2 2 1 HTH domain HTH_20 PF12840.7 gi|222475765|ref|YP_002564286.1| - 0.0019 18.2 0.0 0.0035 17.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain RuBisCO_small PF00101.20 gi|222475765|ref|YP_002564286.1| - 0.0095 15.9 0.0 0.098 12.7 0.0 2.0 1 1 1 2 2 2 1 Ribulose bisphosphate carboxylase, small chain DUF86 PF01934.17 gi|222475765|ref|YP_002564286.1| - 0.01 15.7 0.0 0.033 14.0 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function DUF86 HTH_24 PF13412.6 gi|222475765|ref|YP_002564286.1| - 0.014 14.9 0.1 0.039 13.5 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|222475765|ref|YP_002564286.1| - 0.016 15.1 0.0 0.031 14.2 0.0 1.6 1 1 0 1 1 1 0 MarR family TrmB PF01978.19 gi|222475765|ref|YP_002564286.1| - 0.016 15.0 0.0 0.034 14.0 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|222475765|ref|YP_002564286.1| - 0.046 13.6 0.0 0.095 12.6 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Stk19 PF10494.9 gi|222475765|ref|YP_002564286.1| - 0.12 12.1 0.0 0.14 11.8 0.0 1.1 1 0 0 1 1 1 0 Serine-threonine protein kinase 19 MarR PF01047.22 gi|222475765|ref|YP_002564286.1| - 0.12 12.3 0.0 0.32 10.9 0.0 1.8 1 1 0 1 1 1 0 MarR family HTH_36 PF13730.6 gi|222475765|ref|YP_002564286.1| - 0.17 11.8 0.0 0.29 11.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain SWIM PF04434.17 gi|222475767|ref|YP_002564288.1| - 0.033 13.9 0.9 0.1 12.3 0.9 1.8 1 1 0 1 1 1 0 SWIM zinc finger Peptidase_M78 PF06114.13 gi|222475768|ref|YP_002564289.1| - 0.00076 19.4 0.0 0.0012 18.8 0.0 1.4 1 0 0 1 1 1 1 IrrE N-terminal-like domain OGG_N PF07934.12 gi|222475768|ref|YP_002564289.1| - 0.07 13.2 0.1 0.2 11.7 0.0 1.8 2 1 0 2 2 2 0 8-oxoguanine DNA glycosylase, N-terminal domain SprT-like PF10263.9 gi|222475768|ref|YP_002564289.1| - 0.087 12.7 0.2 0.32 10.9 0.1 1.9 2 0 0 2 2 2 0 SprT-like family DUF2268 PF10026.9 gi|222475768|ref|YP_002564289.1| - 0.089 12.3 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) HypA PF01155.19 gi|222475769|ref|YP_002564290.1| - 0.00029 20.8 1.6 0.00034 20.6 1.6 1.2 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_15 PF17032.5 gi|222475769|ref|YP_002564290.1| - 0.0003 21.5 0.4 0.00036 21.2 0.4 1.2 1 0 0 1 1 1 1 zinc-ribbon family DZR PF12773.7 gi|222475769|ref|YP_002564290.1| - 0.0004 20.3 2.6 0.00065 19.7 2.6 1.4 1 1 0 1 1 1 1 Double zinc ribbon DUF35_N PF12172.8 gi|222475769|ref|YP_002564290.1| - 0.0021 17.9 2.2 0.003 17.4 2.2 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn_Tnp_IS1595 PF12760.7 gi|222475769|ref|YP_002564290.1| - 0.0029 17.5 2.2 0.38 10.8 0.1 2.3 2 0 0 2 2 2 2 Transposase zinc-ribbon domain UPF0547 PF10571.9 gi|222475769|ref|YP_002564290.1| - 0.0029 17.6 3.4 0.0029 17.6 3.4 2.2 2 1 0 2 2 2 1 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.6 gi|222475769|ref|YP_002564290.1| - 0.0035 16.7 2.5 0.0044 16.4 1.3 1.8 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|222475769|ref|YP_002564290.1| - 0.0056 16.4 2.7 0.0098 15.6 2.7 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zf-C3H2C3 PF17122.5 gi|222475769|ref|YP_002564290.1| - 0.0067 16.4 1.5 0.013 15.5 1.5 1.5 1 0 0 1 1 1 1 Zinc-finger DUF1272 PF06906.11 gi|222475769|ref|YP_002564290.1| - 0.0071 16.4 2.8 0.0071 16.4 2.8 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1272) RNA_POL_M_15KD PF02150.16 gi|222475769|ref|YP_002564290.1| - 0.011 15.6 2.9 0.059 13.3 0.0 2.6 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit Zn-ribbon_8 PF09723.10 gi|222475769|ref|YP_002564290.1| - 0.024 14.8 6.7 0.29 11.3 5.8 2.6 2 1 0 2 2 2 0 Zinc ribbon domain RecR PF02132.15 gi|222475769|ref|YP_002564290.1| - 0.14 11.8 2.6 0.12 11.9 0.9 1.9 2 1 0 2 2 2 0 RecR protein NRDD PF13597.6 gi|222475769|ref|YP_002564290.1| - 0.17 10.6 1.5 0.17 10.6 1.5 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase TFIIS_C PF01096.18 gi|222475769|ref|YP_002564290.1| - 0.24 11.3 4.6 6.9 6.6 0.2 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Prim_Zn_Ribbon PF08273.12 gi|222475769|ref|YP_002564290.1| - 0.32 11.3 5.3 1.3 9.4 1.3 2.3 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase Rubredoxin_2 PF18073.1 gi|222475769|ref|YP_002564290.1| - 1.1 9.1 6.2 2.2 8.1 4.1 2.3 2 1 0 2 2 2 0 Rubredoxin metal binding domain ACP53EA PF06313.11 gi|222475772|ref|YP_002564293.1| - 0.088 13.0 0.0 0.15 12.3 0.0 1.4 1 1 0 1 1 1 0 Drosophila ACP53EA protein HMA PF00403.26 gi|222475773|ref|YP_002564294.1| - 6.7e-14 52.1 0.7 7.4e-14 51.9 0.7 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain Fer2_BFD PF04324.15 gi|222475773|ref|YP_002564294.1| - 0.042 14.2 0.2 1.3 9.4 0.0 2.3 2 0 0 2 2 2 0 BFD-like [2Fe-2S] binding domain E1-E2_ATPase PF00122.20 gi|222475774|ref|YP_002564295.1| - 2.3e-47 160.8 0.0 5.4e-47 159.7 0.0 1.7 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.26 gi|222475774|ref|YP_002564295.1| - 2e-39 136.1 3.6 3.8e-39 135.1 3.6 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|222475774|ref|YP_002564295.1| - 1.4e-08 35.1 0.1 3.1e-08 33.9 0.1 1.7 1 0 0 1 1 1 1 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|222475774|ref|YP_002564295.1| - 1.1e-06 28.7 1.1 0.00034 20.4 0.4 2.3 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|222475774|ref|YP_002564295.1| - 0.00015 22.2 0.1 0.00041 20.8 0.1 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|222475774|ref|YP_002564295.1| - 0.089 12.9 0.0 0.3 11.2 0.0 1.8 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase HTH_20 PF12840.7 gi|222475775|ref|YP_002564296.1| - 7.6e-11 41.9 1.7 8e-11 41.8 0.2 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|222475775|ref|YP_002564296.1| - 8.2e-07 28.8 0.1 3.2e-06 26.9 0.1 2.0 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_12 PF08461.10 gi|222475775|ref|YP_002564296.1| - 0.00011 22.0 0.5 0.00026 20.8 0.3 1.8 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain Nop16 PF09420.10 gi|222475775|ref|YP_002564296.1| - 0.00017 21.7 0.5 0.00021 21.4 0.5 1.1 1 0 0 1 1 1 1 Ribosome biogenesis protein Nop16 TFIIE_alpha PF02002.17 gi|222475775|ref|YP_002564296.1| - 0.00041 20.2 0.6 0.011 15.6 0.2 2.3 1 1 1 2 2 2 1 TFIIE alpha subunit PadR PF03551.14 gi|222475775|ref|YP_002564296.1| - 0.001 19.0 0.2 0.0022 17.9 0.2 1.6 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family FUR PF01475.19 gi|222475775|ref|YP_002564296.1| - 0.0015 18.6 0.1 0.003 17.7 0.1 1.4 1 0 0 1 1 1 1 Ferric uptake regulator family Penicillinase_R PF03965.16 gi|222475775|ref|YP_002564296.1| - 0.041 14.3 0.6 0.092 13.1 0.4 1.9 1 1 1 2 2 2 0 Penicillinase repressor Type2_restr_D3 PF16902.5 gi|222475775|ref|YP_002564296.1| - 0.057 13.3 0.4 0.13 12.2 0.4 1.5 1 0 0 1 1 1 0 Type-2 restriction enzyme D3 domain Cor1 PF04803.12 gi|222475775|ref|YP_002564296.1| - 0.078 13.2 0.0 0.11 12.7 0.0 1.2 1 0 0 1 1 1 0 Cor1/Xlr/Xmr conserved region SBP_bac_3 PF00497.20 gi|222475775|ref|YP_002564296.1| - 0.14 11.6 0.1 0.34 10.3 0.0 1.7 1 1 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 Pyr_redox_2 PF07992.14 gi|222475776|ref|YP_002564297.1| - 1.4e-59 201.8 2.9 2e-59 201.2 2.9 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|222475776|ref|YP_002564297.1| - 6.2e-31 106.9 2.0 8.2e-31 106.5 0.8 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|222475776|ref|YP_002564297.1| - 7.8e-15 55.2 3.2 7.9e-15 55.2 0.3 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|222475776|ref|YP_002564297.1| - 9.9e-06 25.1 1.4 2.7e-05 23.7 0.1 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|222475776|ref|YP_002564297.1| - 5.7e-05 22.5 0.6 0.00039 19.8 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|222475776|ref|YP_002564297.1| - 0.0037 16.4 4.8 0.015 14.4 4.6 2.2 2 1 0 2 2 2 1 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|222475776|ref|YP_002564297.1| - 0.0041 16.3 1.9 0.0067 15.5 0.1 2.2 2 1 0 3 3 3 1 FAD binding domain NAD_binding_8 PF13450.6 gi|222475776|ref|YP_002564297.1| - 0.0087 16.3 3.1 2.7 8.3 0.4 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain HxlR PF01638.17 gi|222475777|ref|YP_002564298.1| - 6.9e-15 54.7 0.0 7.8e-15 54.5 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR PF01047.22 gi|222475777|ref|YP_002564298.1| - 8.2e-05 22.5 0.1 0.00017 21.4 0.0 1.6 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 gi|222475777|ref|YP_002564298.1| - 0.00023 21.0 0.0 0.00036 20.4 0.0 1.3 1 0 0 1 1 1 1 MarR family PadR PF03551.14 gi|222475777|ref|YP_002564298.1| - 0.00072 19.5 0.0 0.001 18.9 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.6 gi|222475777|ref|YP_002564298.1| - 0.0028 17.8 0.0 0.0038 17.4 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|222475777|ref|YP_002564298.1| - 0.021 14.9 0.0 0.03 14.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain FUR PF01475.19 gi|222475777|ref|YP_002564298.1| - 0.021 14.9 0.0 0.023 14.8 0.0 1.1 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_27 PF13463.6 gi|222475777|ref|YP_002564298.1| - 0.061 13.8 0.0 0.092 13.3 0.0 1.4 1 1 0 1 1 1 0 Winged helix DNA-binding domain Replic_Relax PF13814.6 gi|222475777|ref|YP_002564298.1| - 0.063 13.3 0.0 0.076 13.1 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation KfrA_N PF11740.8 gi|222475777|ref|YP_002564298.1| - 0.18 12.5 0.0 0.22 12.2 0.0 1.1 1 0 0 1 1 1 0 Plasmid replication region DNA-binding N-term UbiA PF01040.18 gi|222475779|ref|YP_002564300.1| - 4.1e-60 203.2 24.0 4.1e-60 203.2 24.0 2.7 2 1 0 2 2 2 1 UbiA prenyltransferase family COX15-CtaA PF02628.15 gi|222475779|ref|YP_002564300.1| - 3e-09 36.4 35.4 1.2e-05 24.6 7.3 3.7 2 2 1 3 3 3 2 Cytochrome oxidase assembly protein COX3 PF00510.18 gi|222475780|ref|YP_002564301.1| - 1.8e-17 64.0 12.6 3.5e-17 63.1 12.4 1.5 1 1 0 1 1 1 1 Cytochrome c oxidase subunit III Cyt_c_ox_IV PF12270.8 gi|222475780|ref|YP_002564301.1| - 6.4e-06 26.3 0.6 6.4e-06 26.3 0.6 2.9 4 1 0 4 4 4 1 Cytochrome c oxidase subunit IV DDE_Tnp_1 PF01609.21 gi|222475782|ref|YP_002564303.1| - 0.031 13.9 0.1 0.085 12.5 0.1 1.7 1 1 0 1 1 1 0 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|222475783|ref|YP_002564304.1| - 1e-06 28.6 0.1 2e-06 27.6 0.1 1.5 1 0 0 1 1 1 1 Transposase DDE domain Aldolase PF01081.19 gi|222475785|ref|YP_002564306.1| - 1e-43 149.1 2.6 1.2e-43 148.8 2.6 1.0 1 0 0 1 1 1 1 KDPG and KHG aldolase DUF561 PF04481.12 gi|222475785|ref|YP_002564306.1| - 0.0014 17.8 1.9 0.74 8.9 0.0 3.0 3 0 0 3 3 3 2 Protein of unknown function (DUF561) DHO_dh PF01180.21 gi|222475785|ref|YP_002564306.1| - 0.021 14.0 4.5 0.5 9.5 0.6 2.6 1 1 1 2 2 2 0 Dihydroorotate dehydrogenase FeS_assembly_P PF01883.19 gi|222475785|ref|YP_002564306.1| - 0.12 12.6 5.3 0.12 12.6 1.5 2.3 2 0 0 2 2 2 0 Iron-sulfur cluster assembly protein TMP-TENI PF02581.17 gi|222475785|ref|YP_002564306.1| - 0.15 11.4 5.3 6 6.2 5.3 3.1 1 1 0 1 1 1 0 Thiamine monophosphate synthase IclR PF01614.18 gi|222475786|ref|YP_002564307.1| - 1.4e-28 99.3 0.0 2.2e-28 98.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|222475786|ref|YP_002564307.1| - 2.4e-07 30.5 0.0 5.3e-07 29.3 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|222475786|ref|YP_002564307.1| - 7.2e-05 22.6 0.0 0.00015 21.6 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|222475786|ref|YP_002564307.1| - 9.4e-05 22.2 0.0 0.0002 21.2 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|222475786|ref|YP_002564307.1| - 0.00015 21.3 0.0 0.00027 20.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|222475786|ref|YP_002564307.1| - 0.00018 21.4 0.0 0.00035 20.5 0.0 1.5 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 gi|222475786|ref|YP_002564307.1| - 0.00089 19.1 0.0 0.0022 17.9 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.7 gi|222475786|ref|YP_002564307.1| - 0.0009 19.3 0.0 0.0021 18.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|222475786|ref|YP_002564307.1| - 0.00097 19.6 0.2 0.003 18.0 0.0 1.9 2 0 0 2 2 1 1 Winged helix DNA-binding domain SpoVT_C PF15714.5 gi|222475786|ref|YP_002564307.1| - 0.0043 17.1 0.0 0.0063 16.6 0.0 1.3 1 0 0 1 1 1 1 Stage V sporulation protein T C-terminal, transcription factor DUF4423 PF14394.6 gi|222475786|ref|YP_002564307.1| - 0.016 15.0 0.0 0.024 14.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_45 PF14947.6 gi|222475786|ref|YP_002564307.1| - 0.027 14.5 0.0 0.049 13.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_10 PF04967.12 gi|222475786|ref|YP_002564307.1| - 0.044 13.6 0.0 0.096 12.5 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain Fe_dep_repress PF01325.19 gi|222475786|ref|YP_002564307.1| - 0.062 13.5 0.0 0.13 12.5 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.19 gi|222475786|ref|YP_002564307.1| - 0.077 12.9 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|222475786|ref|YP_002564307.1| - 0.12 12.8 0.0 0.23 11.8 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator SBP_bac_8 PF13416.6 gi|222475787|ref|YP_002564308.1| - 6.1e-30 105.0 0.5 1e-29 104.2 0.5 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|222475787|ref|YP_002564308.1| - 3.7e-17 63.3 1.8 4.8e-17 62.9 1.1 1.5 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|222475787|ref|YP_002564308.1| - 0.29 11.0 4.3 0.61 10.0 4.3 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Herpes_capsid PF06112.11 gi|222475787|ref|YP_002564308.1| - 7.7 6.6 6.7 16 5.5 6.7 1.5 1 0 0 1 1 1 0 Gammaherpesvirus capsid protein BPD_transp_1 PF00528.22 gi|222475788|ref|YP_002564309.1| - 1.5e-19 70.4 18.9 1.5e-19 70.4 18.9 2.3 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|222475789|ref|YP_002564310.1| - 3e-16 59.7 17.0 3e-16 59.7 17.0 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|222475790|ref|YP_002564311.1| - 3.9e-33 114.9 0.0 5.8e-33 114.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|222475790|ref|YP_002564311.1| - 4.2e-08 33.4 0.0 0.0006 19.7 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system OB_MalK PF17912.1 gi|222475790|ref|YP_002564311.1| - 4.3e-07 30.7 0.1 2e-06 28.5 0.1 2.3 1 0 0 1 1 1 1 MalK OB fold domain TOBE_2 PF08402.10 gi|222475790|ref|YP_002564311.1| - 1e-06 28.8 0.2 3.5e-06 27.1 0.0 2.0 2 0 0 2 2 2 1 TOBE domain TOBE PF03459.17 gi|222475790|ref|YP_002564311.1| - 1.1e-05 25.7 0.0 6.8e-05 23.1 0.0 2.3 2 0 0 2 2 2 1 TOBE domain CysA_C_terminal PF17850.1 gi|222475790|ref|YP_002564311.1| - 1.1e-05 25.9 1.6 0.00012 22.6 0.4 2.6 2 0 0 2 2 2 1 CysA C-terminal regulatory domain SMC_N PF02463.19 gi|222475790|ref|YP_002564311.1| - 7e-05 22.4 0.3 0.0006 19.3 0.3 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Rad17 PF03215.15 gi|222475790|ref|YP_002564311.1| - 0.00031 20.7 0.0 0.00051 20.0 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_22 PF13401.6 gi|222475790|ref|YP_002564311.1| - 0.00089 19.5 0.0 0.003 17.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|222475790|ref|YP_002564311.1| - 0.00095 19.1 0.0 0.0019 18.1 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|222475790|ref|YP_002564311.1| - 0.002 18.6 0.4 0.0039 17.6 0.4 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|222475790|ref|YP_002564311.1| - 0.0097 16.4 0.0 0.02 15.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|222475790|ref|YP_002564311.1| - 0.02 15.3 0.0 0.17 12.3 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|222475790|ref|YP_002564311.1| - 0.024 14.4 0.0 0.05 13.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain TAF PF02969.17 gi|222475790|ref|YP_002564311.1| - 0.027 14.7 0.0 0.057 13.6 0.0 1.5 1 0 0 1 1 1 0 TATA box binding protein associated factor (TAF) Cytidylate_kin PF02224.18 gi|222475790|ref|YP_002564311.1| - 0.029 14.1 0.2 3.8 7.2 0.0 2.3 2 0 0 2 2 2 0 Cytidylate kinase AAA_25 PF13481.6 gi|222475790|ref|YP_002564311.1| - 0.058 13.0 0.0 0.28 10.7 0.0 2.1 3 0 0 3 3 3 0 AAA domain AAA_15 PF13175.6 gi|222475790|ref|YP_002564311.1| - 0.12 12.0 0.0 0.27 10.9 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain AAA_28 PF13521.6 gi|222475790|ref|YP_002564311.1| - 0.13 12.5 0.0 0.28 11.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain MR_MLE_C PF13378.6 gi|222475791|ref|YP_002564312.1| - 6.4e-67 225.3 0.4 9.2e-67 224.8 0.4 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|222475791|ref|YP_002564312.1| - 3.3e-25 88.6 0.0 5.9e-25 87.8 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain adh_short_C2 PF13561.6 gi|222475792|ref|YP_002564313.1| - 2.2e-55 187.7 4.3 4.1e-55 186.9 4.3 1.3 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|222475792|ref|YP_002564313.1| - 7.6e-45 152.8 0.2 1.1e-44 152.2 0.2 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|222475792|ref|YP_002564313.1| - 1.8e-12 47.5 0.3 2.4e-12 47.1 0.3 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|222475792|ref|YP_002564313.1| - 0.0002 20.9 0.3 0.00027 20.5 0.3 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3HCDH_N PF02737.18 gi|222475792|ref|YP_002564313.1| - 0.051 13.5 0.3 0.08 12.8 0.3 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MccV PF17508.2 gi|222475792|ref|YP_002564313.1| - 3.9 8.1 7.0 0.69 10.5 1.7 2.3 2 0 0 2 2 2 0 Microcin V bacteriocin Glyco_hydro_42 PF02449.15 gi|222475793|ref|YP_002564314.1| - 2.5e-145 484.5 1.0 3.3e-145 484.2 1.0 1.1 1 0 0 1 1 1 1 Beta-galactosidase Glyco_hydro_42M PF08532.10 gi|222475793|ref|YP_002564314.1| - 2.8e-54 183.8 0.0 3.9e-54 183.3 0.0 1.2 1 0 0 1 1 1 1 Beta-galactosidase trimerisation domain Glyco_hydro_14 PF01373.17 gi|222475793|ref|YP_002564314.1| - 4.1e-07 29.3 0.0 0.00034 19.7 0.0 2.1 2 0 0 2 2 2 2 Glycosyl hydrolase family 14 Cellulase PF00150.18 gi|222475793|ref|YP_002564314.1| - 0.0002 20.9 0.0 0.001 18.5 0.0 1.9 2 0 0 2 2 2 1 Cellulase (glycosyl hydrolase family 5) Glyco_hydro_35 PF01301.19 gi|222475793|ref|YP_002564314.1| - 0.0027 17.4 0.0 0.0062 16.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl hydrolases family 35 Melibiase PF02065.18 gi|222475794|ref|YP_002564315.1| - 8.1e-10 38.2 0.0 1.5e-09 37.3 0.0 1.3 1 0 0 1 1 1 1 Melibiase Glyco_hydro_31 PF01055.26 gi|222475794|ref|YP_002564315.1| - 2.5e-07 30.2 0.0 3.3e-07 29.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 Raffinose_syn PF05691.12 gi|222475794|ref|YP_002564315.1| - 5.4e-06 24.5 0.3 7.5e-06 24.0 0.3 1.1 1 0 0 1 1 1 1 Raffinose synthase or seed imbibition protein Sip1 PfkB PF00294.24 gi|222475795|ref|YP_002564316.1| - 7.3e-51 173.3 0.0 8.8e-51 173.0 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Y1_Tnp PF01797.16 gi|222475796|ref|YP_002564317.1| - 5.7e-29 100.7 1.1 2.6e-27 95.3 0.1 2.0 2 0 0 2 2 2 2 Transposase IS200 like OrfB_IS605 PF01385.19 gi|222475797|ref|YP_002564318.1| - 5.8e-31 107.2 0.1 1.1e-30 106.4 0.1 1.4 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|222475797|ref|YP_002564318.1| - 3.4e-17 62.1 0.3 6.5e-17 61.2 0.3 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain NTP_transferase PF00483.23 gi|222475798|ref|YP_002564319.1| - 1.6e-40 139.3 0.0 2e-40 139.0 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|222475798|ref|YP_002564319.1| - 3.5e-18 66.5 0.9 5.3e-18 65.9 0.9 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|222475798|ref|YP_002564319.1| - 1.1e-11 44.0 15.1 8.5e-06 25.3 0.2 4.8 4 1 1 5 5 5 3 Bacterial transferase hexapeptide (six repeats) IspD PF01128.19 gi|222475798|ref|YP_002564319.1| - 0.039 13.7 0.0 0.066 12.9 0.0 1.5 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep_2 PF14602.6 gi|222475798|ref|YP_002564319.1| - 0.084 12.6 3.1 0.98 9.2 0.1 3.6 2 1 2 4 4 4 0 Hexapeptide repeat of succinyl-transferase Cadherin_4 PF17803.1 gi|222475798|ref|YP_002564319.1| - 0.11 13.1 2.5 0.43 11.2 2.5 2.0 1 0 0 1 1 1 0 Bacterial cadherin-like domain DDE_Tnp_1 PF01609.21 gi|222475799|ref|YP_002564320.1| - 2.1e-11 43.9 9.9 1.2e-10 41.4 7.9 2.6 2 1 0 2 2 2 1 Transposase DDE domain DUF772 PF05598.11 gi|222475799|ref|YP_002564320.1| - 0.00071 19.5 0.1 0.002 18.1 0.1 1.8 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_3 PF13612.6 gi|222475799|ref|YP_002564320.1| - 0.0012 18.9 0.3 0.002 18.1 0.3 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 gi|222475799|ref|YP_002564320.1| - 0.0017 18.6 0.8 0.0061 16.9 0.4 2.1 2 0 0 2 2 2 1 Transposase DDE domain HTH_AraC PF00165.23 gi|222475799|ref|YP_002564320.1| - 0.024 14.7 0.0 1.9 8.7 0.0 2.5 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix proteins, AraC family RVP_2 PF08284.11 gi|222475799|ref|YP_002564320.1| - 0.13 12.1 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 Retroviral aspartyl protease LpxC PF03331.13 gi|222475800|ref|YP_002564321.1| - 0.026 14.0 0.0 0.032 13.7 0.0 1.1 1 0 0 1 1 1 0 UDP-3-O-acyl N-acetylglycosamine deacetylase HTH_Tnp_ISL3 PF13542.6 gi|222475802|ref|YP_002564323.1| - 0.0054 16.1 0.0 0.025 14.0 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_5 PF01022.20 gi|222475802|ref|YP_002564323.1| - 0.029 14.2 0.0 0.055 13.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|222475802|ref|YP_002564323.1| - 0.089 12.7 0.0 0.22 11.4 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB TFIIB PF00382.19 gi|222475803|ref|YP_002564324.1| - 4.2e-28 97.2 0.2 1.9e-15 56.6 0.5 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|222475803|ref|YP_002564324.1| - 2.5e-11 42.9 2.8 5e-11 41.9 2.8 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding UPF0547 PF10571.9 gi|222475803|ref|YP_002564324.1| - 0.33 11.1 2.1 0.78 9.9 2.1 1.6 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 HTH_IclR PF09339.10 gi|222475804|ref|YP_002564325.1| - 4.1e-06 26.5 0.0 1e-05 25.2 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|222475804|ref|YP_002564325.1| - 0.00021 21.2 0.0 0.013 15.5 0.0 2.5 3 0 0 3 3 3 1 HTH domain HTH_20 PF12840.7 gi|222475804|ref|YP_002564325.1| - 0.00032 20.7 0.3 0.028 14.5 0.0 2.6 2 1 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|222475804|ref|YP_002564325.1| - 0.00055 19.8 0.1 0.0028 17.5 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|222475804|ref|YP_002564325.1| - 0.0012 18.3 0.4 0.003 17.1 0.0 2.0 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|222475804|ref|YP_002564325.1| - 0.0016 18.3 0.0 0.0041 17.0 0.0 1.7 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_6 PF01418.17 gi|222475804|ref|YP_002564325.1| - 0.0072 16.3 0.0 0.018 15.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain, rpiR family HTH_23 PF13384.6 gi|222475804|ref|YP_002564325.1| - 0.031 14.1 0.0 0.12 12.2 0.0 1.9 2 0 0 2 2 2 0 Homeodomain-like domain HTH_28 PF13518.6 gi|222475804|ref|YP_002564325.1| - 0.075 13.2 0.0 0.23 11.6 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain GerE PF00196.19 gi|222475804|ref|YP_002564325.1| - 0.12 11.9 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Fe_dep_repress PF01325.19 gi|222475804|ref|YP_002564325.1| - 0.14 12.4 0.0 8.9 6.6 0.0 2.3 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain DUF1192 PF06698.11 gi|222475804|ref|YP_002564325.1| - 0.59 10.2 3.2 4.2 7.5 0.1 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF1192) SWIM PF04434.17 gi|222475806|ref|YP_002564327.1| - 0.0017 18.0 0.9 0.0038 16.9 0.9 1.5 1 0 0 1 1 1 1 SWIM zinc finger Phage_Nu1 PF07471.12 gi|222475806|ref|YP_002564327.1| - 0.052 13.3 0.0 0.098 12.4 0.0 1.4 1 0 0 1 1 1 0 Phage DNA packaging protein Nu1 TPR_2 PF07719.17 gi|222475806|ref|YP_002564327.1| - 0.76 10.1 4.1 2.4 8.5 0.1 3.3 3 1 1 4 4 4 0 Tetratricopeptide repeat Syntaxin-6_N PF09177.11 gi|222475807|ref|YP_002564328.1| - 0.28 11.8 9.5 0.27 11.8 2.5 2.2 1 1 1 2 2 2 0 Syntaxin 6, N-terminal DUF1707 PF08044.11 gi|222475807|ref|YP_002564328.1| - 1.9 8.7 9.9 0.95 9.6 0.1 3.6 4 0 0 4 4 4 0 Domain of unknown function (DUF1707) zinc_ribbon_2 PF13240.6 gi|222475808|ref|YP_002564329.1| - 0.012 15.3 1.8 0.012 15.3 1.8 2.7 3 0 0 3 3 3 0 zinc-ribbon domain Spt4 PF06093.13 gi|222475808|ref|YP_002564329.1| - 0.064 13.4 0.6 0.13 12.3 0.1 1.7 2 0 0 2 2 2 0 Spt4/RpoE2 zinc finger zinc_ribbon_15 PF17032.5 gi|222475808|ref|YP_002564329.1| - 0.23 12.2 6.3 5.4 7.8 0.4 3.0 2 1 1 3 3 3 0 zinc-ribbon family DZR PF12773.7 gi|222475808|ref|YP_002564329.1| - 0.99 9.5 8.1 0.89 9.6 0.8 2.6 2 1 0 2 2 2 0 Double zinc ribbon Zf_RING PF16744.5 gi|222475808|ref|YP_002564329.1| - 1.9 8.7 4.5 22 5.3 0.0 3.3 4 0 0 4 4 4 0 KIAA1045 RING finger RNA_POL_M_15KD PF02150.16 gi|222475808|ref|YP_002564329.1| - 8.3 6.4 9.0 12 5.9 0.2 3.4 3 1 0 3 3 3 0 RNA polymerases M/15 Kd subunit HATPase_c PF02518.26 gi|222475812|ref|YP_002564333.1| - 4.8e-16 59.3 0.0 8.8e-16 58.4 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA_7TM PF16927.5 gi|222475812|ref|YP_002564333.1| - 1.3e-14 54.8 21.1 1.7e-14 54.4 21.1 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HisKA PF00512.25 gi|222475812|ref|YP_002564333.1| - 1.5e-11 44.2 1.5 2.5e-11 43.4 1.1 1.7 1 1 0 1 1 1 1 His Kinase A (phospho-acceptor) domain SdpI PF13630.6 gi|222475814|ref|YP_002564335.1| - 9.2e-18 64.1 1.5 9.2e-18 64.1 1.5 3.3 2 1 0 2 2 2 1 SdpI/YhfL protein family DUF1648 PF07853.11 gi|222475814|ref|YP_002564335.1| - 4e-12 45.6 0.6 4e-12 45.6 0.6 3.0 3 1 0 4 4 4 1 Protein of unknown function (DUF1648) PhoR PF11808.8 gi|222475814|ref|YP_002564335.1| - 0.14 12.6 0.2 0.14 12.6 0.2 3.2 4 0 0 4 4 4 0 Phosphate regulon sensor protein PhoR OrfB_Zn_ribbon PF07282.11 gi|222475817|ref|YP_002564338.1| - 0.019 14.9 0.2 0.036 14.0 0.2 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.10 gi|222475817|ref|YP_002564338.1| - 0.13 12.4 1.3 14 5.9 0.2 2.3 2 0 0 2 2 2 0 Zinc ribbon domain A2L_zn_ribbon PF08792.10 gi|222475817|ref|YP_002564338.1| - 0.15 11.8 0.8 3.1 7.6 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain RNA_POL_M_15KD PF02150.16 gi|222475817|ref|YP_002564338.1| - 0.18 11.7 0.2 0.18 11.7 0.2 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf_C2H2_10 PF18414.1 gi|222475817|ref|YP_002564338.1| - 0.24 11.0 5.6 1.8 8.2 0.3 2.3 2 0 0 2 2 2 0 C2H2 type zinc-finger Zn_ribbon_SprT PF17283.2 gi|222475817|ref|YP_002564338.1| - 0.57 10.1 0.1 0.57 10.1 0.1 2.7 3 0 0 3 3 3 0 SprT-like zinc ribbon domain DUF3797 PF12677.7 gi|222475817|ref|YP_002564338.1| - 5.3 7.0 6.0 4.5 7.2 0.6 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) DUF2318 PF10080.9 gi|222475818|ref|YP_002564339.1| - 0.0063 16.6 0.1 0.0079 16.3 0.1 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2318) RPA_interact_C PF14768.6 gi|222475818|ref|YP_002564339.1| - 0.013 16.0 0.3 0.017 15.6 0.3 1.3 1 0 0 1 1 1 0 Replication protein A interacting C-terminal DZR PF12773.7 gi|222475818|ref|YP_002564339.1| - 0.016 15.2 0.7 0.026 14.5 0.7 1.4 1 0 0 1 1 1 0 Double zinc ribbon Nudix_N_2 PF14803.6 gi|222475818|ref|YP_002564339.1| - 0.023 14.6 3.0 2.4 8.2 0.1 2.7 3 0 0 3 3 3 0 Nudix N-terminal zinc_ribbon_2 PF13240.6 gi|222475818|ref|YP_002564339.1| - 0.035 13.8 1.2 4.1 7.3 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|222475818|ref|YP_002564339.1| - 0.095 12.8 0.9 16 5.7 0.4 2.4 2 0 0 2 2 2 0 Zinc ribbon domain DpnI PF06044.12 gi|222475818|ref|YP_002564339.1| - 0.097 12.3 0.3 0.12 12.0 0.3 1.2 1 0 0 1 1 1 0 Dam-replacing family GFA PF04828.14 gi|222475818|ref|YP_002564339.1| - 0.1 12.9 1.5 2.6 8.4 0.2 2.2 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme DNA_ligase_ZBD PF03119.16 gi|222475818|ref|YP_002564339.1| - 0.37 10.9 3.9 0.9 9.6 0.5 2.4 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain RecQ_Zn_bind PF16124.5 gi|222475819|ref|YP_002564340.1| - 0.03 15.0 0.8 0.089 13.5 0.2 2.1 2 0 0 2 2 2 0 RecQ zinc-binding Mrr_cat PF04471.12 gi|222475821|ref|YP_002564342.1| - 4.9e-28 97.4 0.0 9.2e-28 96.6 0.0 1.5 1 0 0 1 1 1 1 Restriction endonuclease Siva PF05458.12 gi|222475821|ref|YP_002564342.1| - 0.0027 17.4 2.3 0.0041 16.8 2.3 1.2 1 0 0 1 1 1 1 Cd27 binding protein (Siva) Mrr_cat_2 PF13156.6 gi|222475821|ref|YP_002564342.1| - 0.0048 16.8 0.0 0.0094 15.9 0.0 1.4 1 0 0 1 1 1 1 Restriction endonuclease DZR PF12773.7 gi|222475821|ref|YP_002564342.1| - 0.68 10.0 5.6 0.1 12.6 1.3 1.7 1 1 1 2 2 2 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|222475821|ref|YP_002564342.1| - 0.91 9.0 3.8 2.1 7.9 3.2 2.0 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|222475821|ref|YP_002564342.1| - 1.3 8.9 4.9 0.43 10.4 1.8 1.9 2 0 0 2 2 2 0 zinc-ribbon domain zf-RING_5 PF14634.6 gi|222475821|ref|YP_002564342.1| - 7.5 6.6 8.5 87 3.2 7.5 2.3 2 0 0 2 2 2 0 zinc-RING finger domain AraC_binding_2 PF14525.6 gi|222475822|ref|YP_002564343.1| - 0.032 13.9 0.0 0.042 13.5 0.0 1.2 1 0 0 1 1 1 0 AraC-binding-like domain TSC22 PF01166.18 gi|222475823|ref|YP_002564344.1| - 0.028 14.7 0.0 0.047 14.0 0.0 1.3 1 0 0 1 1 1 0 TSC-22/dip/bun family Rrf2 PF02082.20 gi|222475824|ref|YP_002564345.1| - 0.0026 18.1 0.0 0.25 11.7 0.0 2.5 2 0 0 2 2 2 1 Transcriptional regulator HTH_28 PF13518.6 gi|222475824|ref|YP_002564345.1| - 0.0036 17.4 0.4 0.0065 16.6 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|222475824|ref|YP_002564345.1| - 0.013 15.4 0.0 0.027 14.4 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.10 gi|222475824|ref|YP_002564345.1| - 0.022 14.5 0.0 0.038 13.8 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_23 PF13384.6 gi|222475824|ref|YP_002564345.1| - 0.026 14.3 0.0 0.066 13.0 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain TrmB PF01978.19 gi|222475824|ref|YP_002564345.1| - 0.039 13.8 0.1 0.069 13.0 0.1 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF4439 PF14530.6 gi|222475824|ref|YP_002564345.1| - 0.043 14.5 0.0 0.11 13.2 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4439) Fe_dep_repress PF01325.19 gi|222475824|ref|YP_002564345.1| - 0.046 13.9 0.1 0.13 12.5 0.0 1.9 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.6 gi|222475824|ref|YP_002564345.1| - 0.066 12.8 0.1 0.26 10.9 0.1 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding GntR PF00392.21 gi|222475824|ref|YP_002564345.1| - 0.069 12.8 0.0 0.31 10.7 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family Phage_NinH PF06322.11 gi|222475824|ref|YP_002564345.1| - 0.099 12.6 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 Phage NinH protein HTH_36 PF13730.6 gi|222475824|ref|YP_002564345.1| - 0.099 12.6 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|222475824|ref|YP_002564345.1| - 0.13 12.3 0.0 0.25 11.4 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix HTH_12 PF08461.10 gi|222475826|ref|YP_002564347.1| - 0.09 12.7 0.1 2 8.4 0.0 2.3 2 1 0 2 2 2 0 Ribonuclease R winged-helix domain DDE_Tnp_1 PF01609.21 gi|222475827|ref|YP_002564348.1| - 0.031 13.9 0.1 0.085 12.5 0.1 1.7 1 1 0 1 1 1 0 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|222475828|ref|YP_002564349.1| - 0.009 15.7 0.0 0.0095 15.6 0.0 1.0 1 0 0 1 1 1 1 Transposase DDE domain HTH_20 PF12840.7 gi|222475831|ref|YP_002564352.1| - 3.9e-11 42.8 0.0 6.2e-11 42.2 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|222475831|ref|YP_002564352.1| - 1.5e-07 31.2 0.0 2e-07 30.8 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|222475831|ref|YP_002564352.1| - 1.4e-06 28.1 0.0 2.4e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|222475831|ref|YP_002564352.1| - 4.2e-06 26.6 0.0 7.4e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|222475831|ref|YP_002564352.1| - 1.6e-05 24.7 0.0 2.3e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB B-block_TFIIIC PF04182.12 gi|222475831|ref|YP_002564352.1| - 6.7e-05 23.0 0.0 9.7e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_24 PF13412.6 gi|222475831|ref|YP_002564352.1| - 0.00025 20.5 0.0 0.00035 20.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|222475831|ref|YP_002564352.1| - 0.00051 20.5 0.1 0.00087 19.7 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.14 gi|222475831|ref|YP_002564352.1| - 0.00078 19.4 1.3 0.0029 17.5 0.2 2.0 1 1 1 2 2 2 1 Transcriptional regulator PadR-like family TFIIE_alpha PF02002.17 gi|222475831|ref|YP_002564352.1| - 0.0044 16.9 0.0 0.0054 16.6 0.0 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_IclR PF09339.10 gi|222475831|ref|YP_002564352.1| - 0.0073 16.1 0.0 0.012 15.4 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HxlR PF01638.17 gi|222475831|ref|YP_002564352.1| - 0.016 15.0 0.0 0.021 14.7 0.0 1.2 1 0 0 1 1 1 0 HxlR-like helix-turn-helix RP-C PF03428.13 gi|222475831|ref|YP_002564352.1| - 0.071 12.8 0.0 0.1 12.2 0.0 1.2 1 0 0 1 1 1 0 Replication protein C N-terminal domain HTH_34 PF13601.6 gi|222475831|ref|YP_002564352.1| - 0.093 12.9 0.0 0.12 12.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF2513 PF10711.9 gi|222475831|ref|YP_002564352.1| - 0.12 12.6 0.0 0.17 12.2 0.0 1.3 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) DDE_Tnp_1 PF01609.21 gi|222475834|ref|YP_002564355.1| - 0.031 13.9 0.1 0.085 12.5 0.1 1.7 1 1 0 1 1 1 0 Transposase DDE domain Amidase PF01425.21 gi|222475835|ref|YP_002564356.1| - 1.3e-120 403.4 0.0 1.6e-120 403.1 0.0 1.1 1 0 0 1 1 1 1 Amidase ABC_tran PF00005.27 gi|222475836|ref|YP_002564357.1| - 9e-34 116.9 0.0 1.2e-33 116.6 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|222475836|ref|YP_002564357.1| - 6.3e-10 39.3 6.0 4.9e-05 23.3 0.3 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system BCA_ABC_TP_C PF12399.8 gi|222475836|ref|YP_002564357.1| - 1.2e-08 34.7 0.2 4.5e-08 32.8 0.0 2.1 2 0 0 2 2 2 1 Branched-chain amino acid ATP-binding cassette transporter SMC_N PF02463.19 gi|222475836|ref|YP_002564357.1| - 0.00049 19.6 1.8 0.093 12.2 1.8 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|222475836|ref|YP_002564357.1| - 0.00056 19.7 0.1 0.0071 16.1 0.0 2.0 1 1 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|222475836|ref|YP_002564357.1| - 0.00066 19.4 0.1 0.0014 18.4 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|222475836|ref|YP_002564357.1| - 0.00076 20.0 3.4 0.0016 18.9 3.4 1.6 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|222475836|ref|YP_002564357.1| - 0.014 15.8 0.3 0.17 12.3 0.1 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|222475836|ref|YP_002564357.1| - 0.016 15.5 1.7 0.12 12.6 1.7 2.2 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|222475836|ref|YP_002564357.1| - 0.019 15.4 0.1 0.052 13.9 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain MukB PF04310.12 gi|222475836|ref|YP_002564357.1| - 0.029 14.2 0.1 0.054 13.3 0.1 1.4 1 0 0 1 1 1 0 MukB N-terminal AAA_30 PF13604.6 gi|222475836|ref|YP_002564357.1| - 0.04 13.6 0.1 0.051 13.3 0.1 1.4 1 1 0 1 1 1 0 AAA domain KdpD PF02702.17 gi|222475836|ref|YP_002564357.1| - 0.079 12.4 0.1 0.13 11.7 0.1 1.4 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain T2SSE PF00437.20 gi|222475836|ref|YP_002564357.1| - 0.13 11.3 0.3 0.31 10.1 0.3 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein RsgA_GTPase PF03193.16 gi|222475836|ref|YP_002564357.1| - 0.14 12.0 0.1 0.31 10.9 0.1 1.5 1 0 0 1 1 1 0 RsgA GTPase SRP54 PF00448.22 gi|222475836|ref|YP_002564357.1| - 0.25 11.0 0.6 0.44 10.1 0.1 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain DUF3584 PF12128.8 gi|222475836|ref|YP_002564357.1| - 0.37 8.3 0.7 0.54 7.7 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) ABC_tran PF00005.27 gi|222475837|ref|YP_002564358.1| - 4.6e-29 101.7 0.0 6.3e-29 101.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|222475837|ref|YP_002564358.1| - 6.6e-10 39.3 0.1 9.6e-05 22.3 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|222475837|ref|YP_002564358.1| - 1.8e-06 27.6 0.3 1.9e-05 24.2 0.3 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|222475837|ref|YP_002564358.1| - 5.9e-05 23.7 0.0 0.00011 22.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|222475837|ref|YP_002564358.1| - 6.8e-05 22.7 0.0 0.00023 21.0 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|222475837|ref|YP_002564358.1| - 0.00019 21.1 0.0 0.00036 20.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|222475837|ref|YP_002564358.1| - 0.0019 18.0 0.0 0.0033 17.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|222475837|ref|YP_002564358.1| - 0.0024 17.9 0.0 0.0041 17.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) RsgA_GTPase PF03193.16 gi|222475837|ref|YP_002564358.1| - 0.0062 16.4 0.0 0.0099 15.8 0.0 1.2 1 0 0 1 1 1 1 RsgA GTPase AAA_27 PF13514.6 gi|222475837|ref|YP_002564358.1| - 0.011 15.3 0.0 0.023 14.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|222475837|ref|YP_002564358.1| - 0.012 15.8 0.0 0.083 13.2 0.0 2.0 2 1 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|222475837|ref|YP_002564358.1| - 0.075 13.0 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA PF00004.29 gi|222475837|ref|YP_002564358.1| - 0.08 13.4 0.0 0.17 12.3 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|222475837|ref|YP_002564358.1| - 0.11 12.9 0.0 0.19 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain Terminase_6C PF17289.2 gi|222475837|ref|YP_002564358.1| - 0.11 12.6 0.0 0.2 11.7 0.0 1.3 1 0 0 1 1 1 0 Terminase RNaseH-like domain AAA_24 PF13479.6 gi|222475837|ref|YP_002564358.1| - 0.14 11.9 0.0 0.23 11.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|222475837|ref|YP_002564358.1| - 0.24 10.0 0.0 0.41 9.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain BPD_transp_2 PF02653.16 gi|222475838|ref|YP_002564359.1| - 2.5e-36 125.2 44.1 3e-36 125.0 44.1 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|222475839|ref|YP_002564360.1| - 7.6e-34 117.1 42.0 7.6e-34 117.1 42.0 1.5 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component Peptidase_M20 PF01546.28 gi|222475840|ref|YP_002564361.1| - 6.8e-30 104.3 0.8 9.2e-30 103.9 0.8 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|222475840|ref|YP_002564361.1| - 2.9e-16 59.3 0.1 5.4e-16 58.5 0.1 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Hist_deacetyl PF00850.19 gi|222475841|ref|YP_002564362.1| - 3.2e-71 240.3 0.0 4.1e-71 240.0 0.0 1.1 1 0 0 1 1 1 1 Histone deacetylase domain RHH_1 PF01402.21 gi|222475842|ref|YP_002564363.1| - 1.2e-06 28.2 1.1 3.7e-06 26.7 0.1 1.9 1 1 1 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|222475842|ref|YP_002564363.1| - 0.0028 17.8 0.0 0.0028 17.8 0.0 1.1 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family Latarcin PF10279.9 gi|222475842|ref|YP_002564363.1| - 0.061 13.7 0.3 0.069 13.6 0.3 1.0 1 0 0 1 1 1 0 Latarcin precursor DUF4064 PF13273.6 gi|222475843|ref|YP_002564364.1| - 1.9 8.8 6.2 0.72 10.2 1.7 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF4064) bPH_2 PF03703.14 gi|222475844|ref|YP_002564365.1| - 7.1e-18 64.6 0.0 1.1e-17 64.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial PH domain bPH_2 PF03703.14 gi|222475845|ref|YP_002564366.1| - 2.4e-12 46.9 0.0 3.5e-12 46.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial PH domain DUF3188 PF11384.8 gi|222475845|ref|YP_002564366.1| - 0.026 14.2 0.8 0.049 13.4 0.8 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3188) DUF2178 PF09946.9 gi|222475845|ref|YP_002564366.1| - 0.058 13.6 0.9 0.097 12.8 0.9 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2178) DUF3040 PF11239.8 gi|222475845|ref|YP_002564366.1| - 0.07 13.4 0.3 0.15 12.4 0.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) Ribosomal_S6e PF01092.19 gi|222475845|ref|YP_002564366.1| - 0.097 12.7 0.0 0.15 12.1 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein S6e DUF3267 PF11667.8 gi|222475845|ref|YP_002564366.1| - 0.57 10.5 3.5 0.95 9.8 3.4 1.3 1 1 0 1 1 1 0 Putative zincin peptidase OrfB_Zn_ribbon PF07282.11 gi|222475846|ref|YP_002564367.1| - 3.9e-23 81.2 0.4 7.6e-23 80.2 0.4 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Y1_Tnp PF01797.16 gi|222475847|ref|YP_002564368.1| - 9.7e-36 122.5 0.1 1.1e-35 122.4 0.1 1.0 1 0 0 1 1 1 1 Transposase IS200 like DUF4965 PF16335.5 gi|222475847|ref|YP_002564368.1| - 0.11 12.1 0.0 0.13 12.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4965) DUF2610 PF11020.8 gi|222475847|ref|YP_002564368.1| - 0.12 12.2 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF2610) CPBP PF02517.16 gi|222475848|ref|YP_002564369.1| - 1.1e-10 41.7 6.6 1.1e-10 41.7 6.6 2.6 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease DUF4538 PF15061.6 gi|222475848|ref|YP_002564369.1| - 4.9 7.0 6.6 1.3 8.8 1.8 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4538) DUF2070 PF09843.9 gi|222475848|ref|YP_002564369.1| - 9.6 4.4 19.1 4.8 5.3 5.4 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2070) DUF4013 PF13197.6 gi|222475849|ref|YP_002564370.1| - 1.9e-05 24.6 15.0 1.9e-05 24.6 15.0 3.4 1 1 2 3 3 3 1 Protein of unknown function (DUF4013) UPF0640 PF15114.6 gi|222475849|ref|YP_002564370.1| - 0.0031 17.3 0.0 0.0079 16.0 0.0 1.6 1 0 0 1 1 1 1 Uncharacterised protein family UPF0640 PsbM PF05151.12 gi|222475849|ref|YP_002564370.1| - 0.014 15.2 1.9 0.014 15.2 1.9 3.7 2 1 0 2 2 2 0 Photosystem II reaction centre M protein (PsbM) FtsX PF02687.21 gi|222475849|ref|YP_002564370.1| - 0.03 14.8 0.8 0.03 14.8 0.8 4.4 1 1 4 5 5 5 0 FtsX-like permease family PepSY PF03413.19 gi|222475850|ref|YP_002564371.1| - 0.023 15.2 0.1 0.091 13.3 0.1 2.0 1 0 0 1 1 1 0 Peptidase propeptide and YPEB domain BPD_transp_1 PF00528.22 gi|222475850|ref|YP_002564371.1| - 0.36 10.5 7.0 0.59 9.8 7.0 1.2 1 0 0 1 1 1 0 Binding-protein-dependent transport system inner membrane component SNARE_assoc PF09335.11 gi|222475850|ref|YP_002564371.1| - 1.1 9.7 6.0 2.1 8.9 6.0 1.3 1 0 0 1 1 1 0 SNARE associated Golgi protein ATPase_gene1 PF09527.10 gi|222475850|ref|YP_002564371.1| - 1.4 9.2 9.3 2.5 8.3 9.3 1.4 1 0 0 1 1 1 0 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter TMEM208_SND2 PF05620.11 gi|222475851|ref|YP_002564372.1| - 0.24 11.1 1.9 0.28 11.0 1.9 1.0 1 0 0 1 1 1 0 SRP-independent targeting protein 2/TMEM208 DUF2207 PF09972.9 gi|222475851|ref|YP_002564372.1| - 3.2 6.4 5.7 3.4 6.3 5.7 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Ofd1_CTDD PF10637.9 gi|222475853|ref|YP_002564374.1| - 0.045 13.1 0.0 0.056 12.8 0.0 1.1 1 0 0 1 1 1 0 Oxoglutarate and iron-dependent oxygenase degradation C-term ABC_tran PF00005.27 gi|222475854|ref|YP_002564375.1| - 5.6e-32 111.1 0.0 7.7e-32 110.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|222475854|ref|YP_002564375.1| - 4.4e-19 69.4 0.0 8.4e-13 48.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_13 PF13166.6 gi|222475854|ref|YP_002564375.1| - 0.00019 20.3 0.3 0.25 9.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.6 gi|222475854|ref|YP_002564375.1| - 0.0018 18.0 0.0 0.65 9.7 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|222475854|ref|YP_002564375.1| - 0.018 15.5 0.1 0.034 14.6 0.1 1.4 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|222475854|ref|YP_002564375.1| - 0.046 13.9 0.0 0.079 13.2 0.0 1.4 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.6 gi|222475854|ref|YP_002564375.1| - 0.07 13.4 0.0 0.56 10.5 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|222475854|ref|YP_002564375.1| - 0.073 12.8 0.0 0.17 11.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|222475854|ref|YP_002564375.1| - 0.094 13.1 0.0 0.19 12.1 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 gi|222475854|ref|YP_002564375.1| - 0.095 13.1 0.1 0.78 10.2 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) 4HB_MCP_1 PF12729.7 gi|222475855|ref|YP_002564376.1| - 0.27 10.8 0.1 8.2 5.9 0.0 2.6 2 0 0 2 2 2 0 Four helix bundle sensory module for signal transduction DDE_Tnp_1 PF01609.21 gi|222475856|ref|YP_002564377.1| - 0.031 13.9 0.1 0.085 12.5 0.1 1.7 1 1 0 1 1 1 0 Transposase DDE domain Phage_int_SAM_5 PF13102.6 gi|222475858|ref|YP_002564379.1| - 2.3e-06 27.8 0.0 6.2e-06 26.5 0.0 1.7 1 1 0 1 1 1 1 Phage integrase SAM-like domain Phage_int_SAM_1 PF02899.17 gi|222475858|ref|YP_002564379.1| - 0.0015 18.8 0.0 0.13 12.6 0.0 3.2 3 0 0 3 3 3 1 Phage integrase, N-terminal SAM-like domain RHH_6 PF16762.5 gi|222475858|ref|YP_002564379.1| - 0.0078 16.8 0.1 1.8 9.3 0.0 2.7 2 0 0 2 2 2 1 Ribbon-helix-helix domain Phage_integrase PF00589.22 gi|222475858|ref|YP_002564379.1| - 0.028 14.2 0.0 0.17 11.7 0.0 2.2 1 1 0 1 1 1 0 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|222475858|ref|YP_002564379.1| - 0.12 12.9 0.0 0.29 11.6 0.0 1.6 1 0 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain DDE_Tnp_1 PF01609.21 gi|222475859|ref|YP_002564380.1| - 3e-07 30.3 0.5 6.9e-07 29.1 0.5 1.6 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|222475859|ref|YP_002564380.1| - 0.00014 21.8 0.3 0.00014 21.8 0.3 2.5 3 0 0 3 3 3 1 Transposase domain (DUF772) DDE_5 PF13546.6 gi|222475859|ref|YP_002564380.1| - 0.01 15.2 0.3 0.02 14.2 0.3 1.4 1 0 0 1 1 1 0 DDE superfamily endonuclease DDE_Tnp_1_2 PF13586.6 gi|222475859|ref|YP_002564380.1| - 0.11 12.8 0.1 0.32 11.4 0.1 1.8 2 0 0 2 2 2 0 Transposase DDE domain Ribonuc_red_lgC PF02867.15 gi|222475860|ref|YP_002564381.1| - 2.8e-89 300.0 0.7 5.1e-32 111.1 0.1 3.0 1 1 2 3 3 3 3 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|222475860|ref|YP_002564381.1| - 0.00045 20.2 0.0 0.0015 18.5 0.0 1.9 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain Ribonuc_red_sm PF00268.21 gi|222475861|ref|YP_002564382.1| - 4.8e-47 160.7 1.0 4.8e-47 160.7 1.0 1.8 1 1 1 2 2 2 1 Ribonucleotide reductase, small chain ATP-cone PF03477.16 gi|222475862|ref|YP_002564383.1| - 2.5e-17 63.2 0.1 3.4e-17 62.8 0.1 1.2 1 0 0 1 1 1 1 ATP cone domain Zn_Tnp_IS1595 PF12760.7 gi|222475862|ref|YP_002564383.1| - 0.0026 17.7 1.2 0.0038 17.2 1.2 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Ogr_Delta PF04606.12 gi|222475862|ref|YP_002564383.1| - 0.056 13.4 1.8 0.098 12.7 1.8 1.4 1 0 0 1 1 1 0 Ogr/Delta-like zinc finger zf-ZPR1 PF03367.13 gi|222475862|ref|YP_002564383.1| - 0.066 13.1 1.6 0.22 11.4 1.6 2.0 1 1 0 1 1 1 0 ZPR1 zinc-finger domain OrfB_Zn_ribbon PF07282.11 gi|222475865|ref|YP_002564386.1| - 1.3e-18 66.7 2.0 2.9e-18 65.5 2.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|222475865|ref|YP_002564386.1| - 6e-14 52.3 0.0 2.1e-13 50.5 0.0 1.9 1 1 0 1 1 1 1 Probable transposase Zn_Tnp_IS1595 PF12760.7 gi|222475865|ref|YP_002564386.1| - 7.1e-05 22.7 0.1 0.00019 21.3 0.1 1.7 1 0 0 1 1 1 1 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|222475865|ref|YP_002564386.1| - 0.002 17.6 4.0 0.002 17.6 4.0 1.9 2 0 0 2 2 2 1 TFIIB zinc-binding zf_Rg PF17915.1 gi|222475865|ref|YP_002564386.1| - 0.0041 16.5 1.0 0.0095 15.3 1.0 1.5 1 0 0 1 1 1 1 Reverse gyrase zinc finger zf-ACC PF17848.1 gi|222475865|ref|YP_002564386.1| - 0.019 15.0 2.7 0.046 13.8 2.7 1.7 1 0 0 1 1 1 0 Acetyl-coA carboxylase zinc finger domain C1_2 PF03107.16 gi|222475865|ref|YP_002564386.1| - 0.023 15.0 1.2 0.047 14.0 1.2 1.5 1 0 0 1 1 1 0 C1 domain DZR PF12773.7 gi|222475865|ref|YP_002564386.1| - 0.11 12.6 2.2 0.28 11.2 2.2 1.8 1 0 0 1 1 1 0 Double zinc ribbon Nudix_N_2 PF14803.6 gi|222475865|ref|YP_002564386.1| - 1.4 8.9 4.4 2.1 8.3 1.3 2.6 2 1 0 2 2 2 0 Nudix N-terminal Cdc6_C PF09079.11 gi|222475873|ref|YP_002564394.1| - 3.3e-20 71.9 0.1 7.9e-20 70.6 0.1 1.7 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|222475873|ref|YP_002564394.1| - 1.4e-11 44.8 0.0 3.6e-11 43.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|222475873|ref|YP_002564394.1| - 1e-09 39.0 0.1 3.3e-08 34.1 0.0 2.8 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|222475873|ref|YP_002564394.1| - 1.1e-06 29.1 0.0 3.4e-06 27.5 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|222475873|ref|YP_002564394.1| - 1.5e-06 28.3 0.0 2.6e-06 27.5 0.0 1.4 1 0 0 1 1 1 1 NACHT domain TniB PF05621.11 gi|222475873|ref|YP_002564394.1| - 3.4e-05 23.3 0.0 6.3e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial TniB protein ATPase_2 PF01637.18 gi|222475873|ref|YP_002564394.1| - 0.00017 21.6 0.0 0.00029 20.9 0.0 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea DUF815 PF05673.13 gi|222475873|ref|YP_002564394.1| - 0.0055 15.9 0.0 0.0083 15.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_7 PF12775.7 gi|222475873|ref|YP_002564394.1| - 0.02 14.4 0.0 0.032 13.7 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region T2SSE PF00437.20 gi|222475873|ref|YP_002564394.1| - 0.028 13.5 0.0 0.051 12.6 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein NB-ARC PF00931.22 gi|222475873|ref|YP_002564394.1| - 0.052 12.7 0.0 0.09 12.0 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain TrwB_AAD_bind PF10412.9 gi|222475873|ref|YP_002564394.1| - 0.052 12.5 0.0 0.25 10.2 0.0 1.9 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain DEAD PF00270.29 gi|222475873|ref|YP_002564394.1| - 0.062 13.1 0.1 1.4 8.7 0.0 2.4 1 1 0 2 2 2 0 DEAD/DEAH box helicase AAA_25 PF13481.6 gi|222475873|ref|YP_002564394.1| - 0.068 12.7 0.0 8.4 5.9 0.0 2.6 2 0 0 2 2 2 0 AAA domain AAA_32 PF13654.6 gi|222475873|ref|YP_002564394.1| - 0.087 11.6 0.5 0.58 8.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|222475873|ref|YP_002564394.1| - 0.092 13.1 0.0 0.17 12.3 0.0 1.5 1 0 0 1 1 1 0 RNA helicase FtsK_SpoIIIE PF01580.18 gi|222475873|ref|YP_002564394.1| - 0.094 12.0 0.0 3.8 6.8 0.0 2.5 2 1 0 2 2 2 0 FtsK/SpoIIIE family Sigma54_activat PF00158.26 gi|222475873|ref|YP_002564394.1| - 0.11 12.2 0.0 0.24 11.1 0.0 1.6 2 0 0 2 2 2 0 Sigma-54 interaction domain OrfB_Zn_ribbon PF07282.11 gi|222475874|ref|YP_002564395.1| - 3.5e-23 81.3 0.5 6.1e-23 80.5 0.5 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zinc-ribbon_6 PF10005.9 gi|222475874|ref|YP_002564395.1| - 0.032 14.9 0.5 6.5 7.5 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain AAA_10 PF12846.7 gi|222475877|ref|YP_002564398.1| - 0.0014 17.6 0.3 1.4 7.8 0.1 2.2 2 0 0 2 2 2 2 AAA-like domain AAA_22 PF13401.6 gi|222475877|ref|YP_002564398.1| - 0.0039 17.5 2.0 2.6 8.3 0.3 3.4 3 0 0 3 3 3 2 AAA domain CagE_TrbE_VirB PF03135.14 gi|222475877|ref|YP_002564398.1| - 0.0069 16.5 0.0 0.019 15.1 0.0 1.6 1 1 0 1 1 1 1 CagE, TrbE, VirB family, component of type IV transporter system TraG-D_C PF12696.7 gi|222475877|ref|YP_002564398.1| - 0.044 13.8 0.0 0.083 12.9 0.0 1.4 1 0 0 1 1 1 0 TraM recognition site of TraD and TraG Zot PF05707.12 gi|222475877|ref|YP_002564398.1| - 0.2 11.3 0.3 1.2 8.7 0.1 2.1 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) Rootletin PF15035.6 gi|222475878|ref|YP_002564399.1| - 0.029 14.4 0.5 0.064 13.3 0.5 1.5 1 0 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion PI3K_P85_iSH2 PF16454.5 gi|222475878|ref|YP_002564399.1| - 0.063 12.9 0.1 0.098 12.3 0.1 1.2 1 0 0 1 1 1 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain YabA PF06156.13 gi|222475878|ref|YP_002564399.1| - 0.2 12.3 0.8 0.36 11.5 0.8 1.4 1 0 0 1 1 1 0 Initiation control protein YabA DUF1192 PF06698.11 gi|222475878|ref|YP_002564399.1| - 1.5 9.0 6.5 5 7.3 6.5 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF1192) TrwB_AAD_bind PF10412.9 gi|222475879|ref|YP_002564400.1| - 1e-06 27.9 0.0 0.017 14.0 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 gi|222475879|ref|YP_002564400.1| - 0.028 14.5 0.0 0.38 10.8 0.0 2.2 2 0 0 2 2 2 0 Helicase HerA, central domain TraG-D_C PF12696.7 gi|222475879|ref|YP_002564400.1| - 0.07 13.1 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 TraM recognition site of TraD and TraG TrmB PF01978.19 gi|222475880|ref|YP_002564401.1| - 0.00011 22.0 0.0 0.00015 21.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|222475880|ref|YP_002564401.1| - 0.00016 21.2 0.0 0.0003 20.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|222475880|ref|YP_002564401.1| - 0.00016 21.6 0.3 0.00029 20.8 0.3 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|222475880|ref|YP_002564401.1| - 0.00047 20.0 0.0 0.00077 19.3 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|222475880|ref|YP_002564401.1| - 0.0087 16.5 0.1 0.014 15.8 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|222475880|ref|YP_002564401.1| - 0.02 14.7 0.0 0.029 14.1 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR PF01047.22 gi|222475880|ref|YP_002564401.1| - 0.045 13.7 0.0 0.076 13.0 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_AsnC-type PF13404.6 gi|222475880|ref|YP_002564401.1| - 0.094 12.6 0.0 0.094 12.6 0.0 2.4 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain Peptidase_M78 PF06114.13 gi|222475882|ref|YP_002564403.1| - 0.033 14.1 0.1 0.058 13.3 0.1 1.4 1 0 0 1 1 1 0 IrrE N-terminal-like domain BSP PF04450.12 gi|222475882|ref|YP_002564403.1| - 0.071 12.9 0.3 0.15 11.8 0.3 1.5 1 1 0 1 1 1 0 Peptidase of plants and bacteria HATPase_c_3 PF13589.6 gi|222475883|ref|YP_002564404.1| - 0.00088 19.1 0.1 0.0019 18.0 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase tRNA_anti-codon PF01336.25 gi|222475885|ref|YP_002564406.1| - 0.022 14.7 0.0 0.04 13.9 0.0 1.4 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain HIN PF02760.15 gi|222475885|ref|YP_002564406.1| - 0.25 11.0 0.0 0.39 10.4 0.0 1.3 1 0 0 1 1 1 0 HIN-200/IF120x domain HNH_repeat PF18780.1 gi|222475886|ref|YP_002564407.1| - 3e-07 30.1 9.0 9.1e-05 22.2 0.0 6.0 6 1 0 6 6 6 1 Homing endonuclease repeat GRAS PF03514.14 gi|222475886|ref|YP_002564407.1| - 0.0013 17.7 0.0 22 3.9 0.0 4.9 5 0 0 5 5 5 1 GRAS domain family Peripla_BP_3 PF13377.6 gi|222475886|ref|YP_002564407.1| - 0.0017 18.7 3.4 30 4.9 0.0 4.6 3 1 1 4 4 4 0 Periplasmic binding protein-like domain Tau95 PF09734.9 gi|222475886|ref|YP_002564407.1| - 0.027 15.3 2.2 30 5.4 0.1 4.6 4 2 0 4 4 4 0 RNA polymerase III transcription factor (TF)IIIC subunit HTH domain Ada3 PF10198.9 gi|222475886|ref|YP_002564407.1| - 0.032 14.4 3.5 2.1 8.5 0.1 4.3 5 1 1 6 6 6 0 Histone acetyltransferases subunit 3 Lipase3_N PF03893.16 gi|222475886|ref|YP_002564407.1| - 3 7.9 6.1 1.4e+02 2.6 0.0 4.8 5 0 0 5 5 5 0 Lipase 3 N-terminal region DUF4129 PF13559.6 gi|222475886|ref|YP_002564407.1| - 4.3 7.7 14.9 1.1 9.5 0.2 5.3 5 0 0 5 5 5 0 Domain of unknown function (DUF4129) PGF-CTERM PF18204.1 gi|222475887|ref|YP_002564408.1| - 8.6e-08 31.9 7.3 2.6e-07 30.4 7.3 1.9 1 0 0 1 1 1 1 PGF-CTERM motif OrfB_Zn_ribbon PF07282.11 gi|222475888|ref|YP_002564409.1| - 2e-18 66.1 2.0 4.2e-18 65.0 2.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|222475888|ref|YP_002564409.1| - 1.7e-13 50.8 0.0 5.9e-13 49.1 0.0 1.8 1 1 0 1 1 1 1 Probable transposase Zn_Tnp_IS1595 PF12760.7 gi|222475888|ref|YP_002564409.1| - 6.1e-05 22.9 0.1 0.00016 21.6 0.1 1.6 1 0 0 1 1 1 1 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|222475888|ref|YP_002564409.1| - 0.00076 18.9 4.0 0.002 17.6 4.0 1.7 1 0 0 1 1 1 1 TFIIB zinc-binding zf_Rg PF17915.1 gi|222475888|ref|YP_002564409.1| - 0.0042 16.5 1.0 0.0095 15.3 1.0 1.5 1 0 0 1 1 1 1 Reverse gyrase zinc finger C1_2 PF03107.16 gi|222475888|ref|YP_002564409.1| - 0.016 15.5 1.0 0.033 14.5 1.0 1.5 1 0 0 1 1 1 0 C1 domain zf-ACC PF17848.1 gi|222475888|ref|YP_002564409.1| - 0.021 14.9 2.7 0.046 13.8 2.7 1.6 1 0 0 1 1 1 0 Acetyl-coA carboxylase zinc finger domain DZR PF12773.7 gi|222475888|ref|YP_002564409.1| - 0.12 12.4 2.2 0.28 11.2 2.2 1.6 1 0 0 1 1 1 0 Double zinc ribbon Nudix_N_2 PF14803.6 gi|222475888|ref|YP_002564409.1| - 1.1 9.2 4.4 2.1 8.3 1.3 2.8 2 1 0 2 2 2 0 Nudix N-terminal DDE_Tnp_1 PF01609.21 gi|222475889|ref|YP_002564410.1| - 0.031 13.9 0.1 0.085 12.5 0.1 1.7 1 1 0 1 1 1 0 Transposase DDE domain GST_N_2 PF13409.6 gi|222475890|ref|YP_002564411.1| - 6.8e-20 71.1 0.0 1.2e-19 70.3 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.6 gi|222475890|ref|YP_002564411.1| - 1.3e-10 41.1 0.0 2.5e-10 40.2 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C PF00043.25 gi|222475890|ref|YP_002564411.1| - 2.1e-07 31.1 0.0 5.9e-07 29.6 0.0 1.7 2 0 0 2 2 2 1 Glutathione S-transferase, C-terminal domain GST_C_3 PF14497.6 gi|222475890|ref|YP_002564411.1| - 0.00033 20.8 0.1 0.00054 20.1 0.1 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_6 PF17171.4 gi|222475890|ref|YP_002564411.1| - 0.0011 18.7 0.3 0.0021 17.8 0.3 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_3 PF13417.6 gi|222475890|ref|YP_002564411.1| - 0.002 18.5 0.0 3.3 8.2 0.0 2.4 2 0 0 2 2 2 2 Glutathione S-transferase, N-terminal domain Thi4 PF01946.17 gi|222475891|ref|YP_002564412.1| - 1.4e-61 207.8 0.6 1.1e-50 172.1 0.5 2.1 2 0 0 2 2 2 2 Thi4 family FAD_oxidored PF12831.7 gi|222475891|ref|YP_002564412.1| - 8.3e-13 48.5 0.3 1.3e-12 47.9 0.3 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|222475891|ref|YP_002564412.1| - 3.5e-11 42.9 5.2 2.1e-08 33.7 0.5 2.4 1 1 0 2 2 2 2 FAD binding domain FAD_binding_3 PF01494.19 gi|222475891|ref|YP_002564412.1| - 1e-10 41.4 0.3 2.2e-10 40.3 0.1 1.5 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.14 gi|222475891|ref|YP_002564412.1| - 2.5e-09 36.4 0.0 3.5e-09 35.9 0.0 1.2 1 0 0 1 1 1 1 HI0933-like protein DAO PF01266.24 gi|222475891|ref|YP_002564412.1| - 2.9e-09 37.0 3.6 4.8e-06 26.4 0.2 2.6 1 1 2 3 3 3 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|222475891|ref|YP_002564412.1| - 3.7e-09 36.2 0.6 2.5e-08 33.5 0.6 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|222475891|ref|YP_002564412.1| - 1.2e-08 35.0 0.2 3.1e-08 33.7 0.2 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.14 gi|222475891|ref|YP_002564412.1| - 1.8e-06 27.1 0.2 0.00047 19.1 0.2 2.2 2 0 0 2 2 2 2 Tryptophan halogenase Pyr_redox_3 PF13738.6 gi|222475891|ref|YP_002564412.1| - 1.2e-05 24.8 0.1 2.1e-05 24.0 0.1 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|222475891|ref|YP_002564412.1| - 3.5e-05 24.3 1.5 7.7e-05 23.2 0.5 2.1 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|222475891|ref|YP_002564412.1| - 3.9e-05 23.7 0.1 8.6e-05 22.6 0.1 1.6 1 0 0 1 1 1 1 FAD-NAD(P)-binding Lycopene_cycl PF05834.12 gi|222475891|ref|YP_002564412.1| - 8e-05 21.8 1.2 0.0006 19.0 0.2 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein Amino_oxidase PF01593.24 gi|222475891|ref|YP_002564412.1| - 0.0003 20.2 0.0 0.00047 19.6 0.0 1.3 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase Shikimate_DH PF01488.20 gi|222475891|ref|YP_002564412.1| - 0.0003 20.9 0.1 0.077 13.1 0.0 2.2 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase GIDA PF01134.22 gi|222475891|ref|YP_002564412.1| - 0.00061 19.0 0.3 0.001 18.2 0.3 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_7 PF13241.6 gi|222475891|ref|YP_002564412.1| - 0.0026 18.2 0.1 0.0045 17.4 0.1 1.6 1 1 0 1 1 1 1 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|222475891|ref|YP_002564412.1| - 0.017 14.4 0.2 0.12 11.7 0.0 2.1 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.18 gi|222475891|ref|YP_002564412.1| - 0.025 14.8 0.8 0.048 13.9 0.1 1.8 2 0 0 2 2 2 0 TrkA-N domain YjeF_N PF03853.15 gi|222475891|ref|YP_002564412.1| - 0.052 13.4 0.1 0.37 10.7 0.0 2.0 2 0 0 2 2 2 0 YjeF-related protein N-terminus GDI PF00996.18 gi|222475891|ref|YP_002564412.1| - 0.18 10.3 0.1 0.3 9.5 0.1 1.3 1 0 0 1 1 1 0 GDP dissociation inhibitor YdjM PF04307.14 gi|222475892|ref|YP_002564413.1| - 8.2e-15 54.5 15.4 1.9e-14 53.4 15.4 1.5 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase CoA_binding_3 PF13727.6 gi|222475892|ref|YP_002564413.1| - 0.015 15.3 0.1 4 7.4 0.0 2.1 2 0 0 2 2 2 0 CoA-binding domain DUF373 PF04123.13 gi|222475892|ref|YP_002564413.1| - 0.38 10.1 2.2 0.46 9.9 2.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF373) SBP_bac_8 PF13416.6 gi|222475893|ref|YP_002564414.1| - 5.2e-16 59.3 0.2 7e-16 58.9 0.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|222475893|ref|YP_002564414.1| - 3.1e-15 56.9 1.4 4.7e-15 56.4 1.4 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein UCR_Fe-S_N PF10399.9 gi|222475893|ref|YP_002564414.1| - 0.071 12.5 0.3 0.14 11.5 0.3 1.4 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TAT_signal PF10518.9 gi|222475893|ref|YP_002564414.1| - 5.6 7.0 9.3 0.09 12.7 1.9 1.8 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence DDE_Tnp_1 PF01609.21 gi|222475894|ref|YP_002564415.1| - 0.031 13.9 0.1 0.085 12.5 0.1 1.7 1 1 0 1 1 1 0 Transposase DDE domain SBP_bac_8 PF13416.6 gi|222475895|ref|YP_002564416.1| - 3.1e-07 30.5 0.0 4.6e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TENA_THI-4 PF03070.16 gi|222475897|ref|YP_002564418.1| - 8.6e-24 84.5 0.0 9.9e-24 84.3 0.0 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family TENA_THI-4 PF03070.16 gi|222475898|ref|YP_002564419.1| - 6.8e-47 160.0 0.0 7.7e-47 159.8 0.0 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family Phos_pyr_kin PF08543.12 gi|222475899|ref|YP_002564420.1| - 6.9e-83 277.8 4.6 8.8e-83 277.5 4.6 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase ThiP_synth PF10120.9 gi|222475899|ref|YP_002564420.1| - 2.5e-52 176.8 0.1 6.2e-52 175.5 0.0 1.7 2 0 0 2 2 2 1 Thiamine-phosphate synthase PfkB PF00294.24 gi|222475899|ref|YP_002564420.1| - 1.3e-11 44.4 1.3 2.1e-11 43.7 1.3 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase HK PF02110.15 gi|222475899|ref|YP_002564420.1| - 0.0016 17.9 1.0 0.016 14.6 1.0 2.0 1 1 0 1 1 1 1 Hydroxyethylthiazole kinase family HMA PF00403.26 gi|222475900|ref|YP_002564421.1| - 4.1e-14 52.8 0.7 4.5e-14 52.6 0.7 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain DUF3606 PF12244.8 gi|222475900|ref|YP_002564421.1| - 0.075 13.0 0.1 0.22 11.5 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3606) DUF4162 PF13732.6 gi|222475900|ref|YP_002564421.1| - 0.099 13.4 0.0 0.099 13.4 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) Fer2_BFD PF04324.15 gi|222475900|ref|YP_002564421.1| - 0.2 12.0 3.1 10 6.6 0.9 2.8 2 1 1 3 3 3 0 BFD-like [2Fe-2S] binding domain E1-E2_ATPase PF00122.20 gi|222475901|ref|YP_002564422.1| - 9.5e-52 175.1 0.5 2.3e-51 173.9 0.1 1.9 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|222475901|ref|YP_002564422.1| - 3.4e-40 138.6 5.6 6.2e-40 137.7 5.6 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|222475901|ref|YP_002564422.1| - 5.5e-10 39.6 1.2 1.1e-09 38.6 0.2 2.1 2 0 0 2 2 2 1 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|222475901|ref|YP_002564422.1| - 5.8e-06 26.2 0.9 0.0003 20.6 0.8 2.4 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|222475901|ref|YP_002564422.1| - 0.014 15.8 0.2 0.084 13.3 0.2 2.3 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase HTH_20 PF12840.7 gi|222475902|ref|YP_002564423.1| - 8e-11 41.8 1.4 2.1e-10 40.5 0.2 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|222475902|ref|YP_002564423.1| - 1.1e-06 28.4 0.1 4.5e-06 26.4 0.1 2.0 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_12 PF08461.10 gi|222475902|ref|YP_002564423.1| - 0.00029 20.7 0.3 0.00068 19.5 0.3 1.7 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain Nop16 PF09420.10 gi|222475902|ref|YP_002564423.1| - 0.00051 20.1 0.7 0.00069 19.7 0.7 1.1 1 0 0 1 1 1 1 Ribosome biogenesis protein Nop16 TFIIE_alpha PF02002.17 gi|222475902|ref|YP_002564423.1| - 0.0019 18.0 0.8 0.022 14.6 0.1 2.2 1 1 1 2 2 2 1 TFIIE alpha subunit FUR PF01475.19 gi|222475902|ref|YP_002564423.1| - 0.0022 18.2 0.1 0.0041 17.3 0.1 1.4 1 0 0 1 1 1 1 Ferric uptake regulator family PadR PF03551.14 gi|222475902|ref|YP_002564423.1| - 0.0087 16.0 0.1 0.016 15.2 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Penicillinase_R PF03965.16 gi|222475902|ref|YP_002564423.1| - 0.034 14.5 0.2 0.074 13.4 0.2 1.8 1 1 0 1 1 1 0 Penicillinase repressor RPA_interact_M PF14767.6 gi|222475902|ref|YP_002564423.1| - 0.19 12.3 2.9 0.39 11.3 0.2 2.3 2 1 0 2 2 2 0 Replication protein A interacting middle Type2_restr_D3 PF16902.5 gi|222475902|ref|YP_002564423.1| - 0.24 11.4 1.9 0.31 11.0 0.5 1.8 2 0 0 2 2 2 0 Type-2 restriction enzyme D3 domain Pyr_redox_2 PF07992.14 gi|222475903|ref|YP_002564424.1| - 1.1e-60 205.3 0.3 1.4e-60 205.0 0.3 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|222475903|ref|YP_002564424.1| - 2.8e-36 124.1 0.1 5.3e-36 123.2 0.1 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|222475903|ref|YP_002564424.1| - 1.1e-20 74.0 2.5 7.8e-19 68.0 0.0 3.3 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|222475903|ref|YP_002564424.1| - 2.9e-17 62.9 0.4 1.6e-16 60.5 0.4 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|222475903|ref|YP_002564424.1| - 4.8e-07 29.2 1.2 0.0066 15.6 1.8 2.5 2 1 0 2 2 2 2 Glucose inhibited division protein A DAO PF01266.24 gi|222475903|ref|YP_002564424.1| - 5.6e-05 22.9 6.4 0.15 11.6 0.1 3.3 3 0 0 3 3 3 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|222475903|ref|YP_002564424.1| - 9.7e-05 22.5 5.3 0.042 14.1 0.1 3.0 3 0 0 3 3 3 2 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.18 gi|222475903|ref|YP_002564424.1| - 0.00012 22.0 0.3 0.011 15.6 0.0 2.4 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|222475903|ref|YP_002564424.1| - 0.00074 18.9 0.2 0.027 13.8 0.0 2.5 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_oxidored PF12831.7 gi|222475903|ref|YP_002564424.1| - 0.0011 18.5 0.3 0.0034 16.8 0.0 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|222475903|ref|YP_002564424.1| - 0.0012 18.0 7.7 0.0038 16.4 1.2 3.2 2 1 2 4 4 4 1 FAD binding domain HI0933_like PF03486.14 gi|222475903|ref|YP_002564424.1| - 0.0021 16.9 5.2 0.043 12.5 0.8 3.1 2 1 1 3 3 3 1 HI0933-like protein K_oxygenase PF13434.6 gi|222475903|ref|YP_002564424.1| - 0.0045 16.2 0.0 0.0077 15.4 0.0 1.4 1 0 0 1 1 1 1 L-lysine 6-monooxygenase (NADPH-requiring) Lycopene_cycl PF05834.12 gi|222475903|ref|YP_002564424.1| - 0.0055 15.8 0.8 0.36 9.8 1.1 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein NAD_binding_7 PF13241.6 gi|222475903|ref|YP_002564424.1| - 0.046 14.1 0.1 0.14 12.6 0.0 1.8 2 0 0 2 2 1 0 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.14 gi|222475903|ref|YP_002564424.1| - 0.11 12.1 4.7 0.22 11.1 1.2 2.7 2 1 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SHOCT PF09851.9 gi|222475904|ref|YP_002564425.1| - 1.9e-07 30.6 1.5 3.1e-07 29.9 1.5 1.2 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|222475904|ref|YP_002564425.1| - 7.1e-05 22.8 0.6 0.00015 21.8 0.6 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) DUF2207 PF09972.9 gi|222475904|ref|YP_002564425.1| - 4.8 5.8 7.2 7.8 5.1 7.2 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) Insulin_TMD PF17870.1 gi|222475904|ref|YP_002564425.1| - 9.3 6.4 7.3 12 6.1 1.5 2.2 2 0 0 2 2 2 0 Insulin receptor trans-membrane segment Pyr_redox_2 PF07992.14 gi|222475905|ref|YP_002564426.1| - 1.4e-58 198.5 3.1 2.6e-58 197.6 3.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|222475905|ref|YP_002564426.1| - 2.8e-32 111.3 0.8 4.7e-32 110.5 0.8 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|222475905|ref|YP_002564426.1| - 2.3e-17 63.3 0.2 2.3e-17 63.3 0.2 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|222475905|ref|YP_002564426.1| - 0.00019 20.8 0.0 0.00019 20.8 0.0 2.2 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|222475905|ref|YP_002564426.1| - 0.00064 19.2 0.2 0.0012 18.3 0.2 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.21 gi|222475905|ref|YP_002564426.1| - 0.00082 18.7 1.1 0.25 10.6 0.0 2.6 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.18 gi|222475905|ref|YP_002564426.1| - 0.0046 16.9 1.0 0.0076 16.1 0.2 1.7 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Multi_ubiq PF14452.6 gi|222475905|ref|YP_002564426.1| - 0.032 14.5 0.9 0.33 11.2 0.1 2.5 2 0 0 2 2 2 0 Multiubiquitin FAD_binding_2 PF00890.24 gi|222475905|ref|YP_002564426.1| - 0.066 12.3 6.8 0.059 12.4 2.8 2.3 2 0 0 2 2 2 0 FAD binding domain GIDA PF01134.22 gi|222475905|ref|YP_002564426.1| - 0.13 11.4 7.1 0.021 13.9 2.2 2.2 3 1 0 3 3 3 0 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|222475905|ref|YP_002564426.1| - 0.18 12.1 4.2 5.8 7.2 0.1 2.5 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain HxlR PF01638.17 gi|222475906|ref|YP_002564427.1| - 6.6e-15 54.7 0.0 7.5e-15 54.6 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR PF01047.22 gi|222475906|ref|YP_002564427.1| - 0.00011 22.1 0.1 0.00029 20.7 0.0 1.7 2 0 0 2 2 2 1 MarR family PadR PF03551.14 gi|222475906|ref|YP_002564427.1| - 0.0029 17.5 0.0 0.0037 17.2 0.0 1.3 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.6 gi|222475906|ref|YP_002564427.1| - 0.015 15.5 0.0 0.019 15.1 0.0 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|222475906|ref|YP_002564427.1| - 0.022 14.7 0.0 0.032 14.1 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_Crp_2 PF13545.6 gi|222475906|ref|YP_002564427.1| - 0.061 13.3 0.0 0.095 12.7 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_20 PF12840.7 gi|222475906|ref|YP_002564427.1| - 0.078 13.1 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|222475906|ref|YP_002564427.1| - 0.12 11.9 0.0 0.21 11.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Cdc6_C PF09079.11 gi|222475908|ref|YP_002564429.1| - 8.2e-13 48.1 0.0 3.3e-12 46.2 0.0 2.1 3 0 0 3 3 1 1 CDC6, C terminal winged helix domain AAA PF00004.29 gi|222475908|ref|YP_002564429.1| - 1.2e-10 41.9 0.0 3.5e-10 40.4 0.0 1.8 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|222475908|ref|YP_002564429.1| - 2.2e-10 41.2 0.0 7.6e-10 39.4 0.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|222475908|ref|YP_002564429.1| - 1.4e-07 31.9 0.0 3.7e-07 30.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.13 gi|222475908|ref|YP_002564429.1| - 4e-06 26.2 0.0 8.8e-06 25.1 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) ATPase_2 PF01637.18 gi|222475908|ref|YP_002564429.1| - 6.7e-05 22.9 0.0 0.00017 21.6 0.0 1.7 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea TniB PF05621.11 gi|222475908|ref|YP_002564429.1| - 0.00025 20.5 0.0 0.00044 19.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial TniB protein NACHT PF05729.12 gi|222475908|ref|YP_002564429.1| - 0.00097 19.1 0.0 0.0019 18.1 0.0 1.4 1 0 0 1 1 1 1 NACHT domain Sigma54_activat PF00158.26 gi|222475908|ref|YP_002564429.1| - 0.019 14.7 0.0 0.033 13.9 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_7 PF12775.7 gi|222475908|ref|YP_002564429.1| - 0.031 13.8 0.0 0.13 11.7 0.0 1.9 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_30 PF13604.6 gi|222475908|ref|YP_002564429.1| - 0.06 13.1 0.6 0.19 11.5 0.1 2.1 2 1 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|222475908|ref|YP_002564429.1| - 0.086 12.6 0.1 0.61 9.8 0.0 2.3 3 0 0 3 3 3 0 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|222475908|ref|YP_002564429.1| - 0.087 12.2 0.0 0.26 10.6 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_29 PF13555.6 gi|222475908|ref|YP_002564429.1| - 0.098 12.4 0.0 0.23 11.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain FTCD_N PF07837.12 gi|222475908|ref|YP_002564429.1| - 0.14 11.9 0.0 0.33 10.7 0.0 1.5 1 0 0 1 1 1 0 Formiminotransferase domain, N-terminal subdomain AAA_assoc_2 PF16193.5 gi|222475908|ref|YP_002564429.1| - 0.18 12.1 1.2 1 9.7 0.1 2.7 2 1 0 2 2 2 0 AAA C-terminal domain SWIM PF04434.17 gi|222475910|ref|YP_002564431.1| - 0.015 15.0 0.6 0.046 13.4 0.6 1.9 1 1 0 1 1 1 0 SWIM zinc finger Peptidase_M78 PF06114.13 gi|222475911|ref|YP_002564432.1| - 0.00077 19.4 0.0 0.0012 18.8 0.0 1.4 1 0 0 1 1 1 1 IrrE N-terminal-like domain OGG_N PF07934.12 gi|222475911|ref|YP_002564432.1| - 0.076 13.1 0.1 0.2 11.7 0.0 1.8 2 1 0 2 2 2 0 8-oxoguanine DNA glycosylase, N-terminal domain SprT-like PF10263.9 gi|222475911|ref|YP_002564432.1| - 0.086 12.7 0.2 0.32 10.9 0.1 1.9 2 0 0 2 2 2 0 SprT-like family DUF2268 PF10026.9 gi|222475911|ref|YP_002564432.1| - 0.087 12.4 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) HypA PF01155.19 gi|222475912|ref|YP_002564433.1| - 0.00029 20.8 1.6 0.00034 20.6 1.6 1.2 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_15 PF17032.5 gi|222475912|ref|YP_002564433.1| - 0.0003 21.5 0.4 0.00036 21.2 0.4 1.2 1 0 0 1 1 1 1 zinc-ribbon family DZR PF12773.7 gi|222475912|ref|YP_002564433.1| - 0.0004 20.3 2.6 0.00065 19.7 2.6 1.4 1 1 0 1 1 1 1 Double zinc ribbon DUF35_N PF12172.8 gi|222475912|ref|YP_002564433.1| - 0.0021 17.9 2.2 0.003 17.4 2.2 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn_Tnp_IS1595 PF12760.7 gi|222475912|ref|YP_002564433.1| - 0.0029 17.5 2.2 0.38 10.8 0.1 2.3 2 0 0 2 2 2 2 Transposase zinc-ribbon domain UPF0547 PF10571.9 gi|222475912|ref|YP_002564433.1| - 0.0029 17.6 3.4 0.0029 17.6 3.4 2.2 2 1 0 2 2 2 1 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.6 gi|222475912|ref|YP_002564433.1| - 0.0035 16.7 2.5 0.0044 16.4 1.3 1.8 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|222475912|ref|YP_002564433.1| - 0.0056 16.4 2.7 0.0098 15.6 2.7 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zf-C3H2C3 PF17122.5 gi|222475912|ref|YP_002564433.1| - 0.0067 16.4 1.5 0.013 15.5 1.5 1.5 1 0 0 1 1 1 1 Zinc-finger DUF1272 PF06906.11 gi|222475912|ref|YP_002564433.1| - 0.0071 16.4 2.8 0.0071 16.4 2.8 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1272) RNA_POL_M_15KD PF02150.16 gi|222475912|ref|YP_002564433.1| - 0.011 15.6 2.9 0.059 13.3 0.0 2.6 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit Zn-ribbon_8 PF09723.10 gi|222475912|ref|YP_002564433.1| - 0.024 14.8 6.7 0.29 11.3 5.8 2.6 2 1 0 2 2 2 0 Zinc ribbon domain RecR PF02132.15 gi|222475912|ref|YP_002564433.1| - 0.14 11.8 2.6 0.12 11.9 0.9 1.9 2 1 0 2 2 2 0 RecR protein NRDD PF13597.6 gi|222475912|ref|YP_002564433.1| - 0.17 10.6 1.5 0.17 10.6 1.5 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase TFIIS_C PF01096.18 gi|222475912|ref|YP_002564433.1| - 0.24 11.3 4.6 6.9 6.6 0.2 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Prim_Zn_Ribbon PF08273.12 gi|222475912|ref|YP_002564433.1| - 0.32 11.3 5.3 1.3 9.4 1.3 2.3 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase Rubredoxin_2 PF18073.1 gi|222475912|ref|YP_002564433.1| - 1.1 9.1 6.2 2.2 8.1 4.1 2.3 2 1 0 2 2 2 0 Rubredoxin metal binding domain TSC22 PF01166.18 gi|222475916|ref|YP_002564437.1| - 0.035 14.4 0.3 0.052 13.9 0.3 1.2 1 0 0 1 1 1 0 TSC-22/dip/bun family Mrr_cat PF04471.12 gi|222475918|ref|YP_002564439.1| - 6e-28 97.2 0.0 1.3e-27 96.1 0.0 1.6 1 0 0 1 1 1 1 Restriction endonuclease DZR PF12773.7 gi|222475918|ref|YP_002564439.1| - 0.016 15.2 0.2 0.016 15.2 0.2 1.8 2 0 0 2 2 2 0 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|222475918|ref|YP_002564439.1| - 0.12 13.1 0.4 0.12 13.1 0.4 2.1 2 0 0 2 2 2 0 zinc-ribbon family DUF3575 PF12099.8 gi|222475918|ref|YP_002564439.1| - 0.12 11.6 0.0 0.21 10.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3575) zinc_ribbon_2 PF13240.6 gi|222475918|ref|YP_002564439.1| - 0.41 10.4 2.6 1.1 9.0 2.6 1.8 1 0 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|222475918|ref|YP_002564439.1| - 2 7.9 6.3 0.76 9.3 1.8 2.0 1 1 1 2 2 2 0 zinc-ribbon domain SelB-wing_2 PF09106.11 gi|222475919|ref|YP_002564440.1| - 0.17 12.1 0.1 0.35 11.1 0.1 1.5 1 0 0 1 1 1 0 Elongation factor SelB, winged helix HTH_20 PF12840.7 gi|222475920|ref|YP_002564441.1| - 8.9e-09 35.3 2.8 0.0004 20.4 0.1 2.7 2 0 0 2 2 2 2 Helix-turn-helix domain MarR_2 PF12802.7 gi|222475920|ref|YP_002564441.1| - 1.3e-07 31.3 0.6 0.0066 16.3 0.0 2.7 2 0 0 2 2 2 2 MarR family HTH_27 PF13463.6 gi|222475920|ref|YP_002564441.1| - 4.5e-07 30.3 0.6 0.00011 22.6 0.1 2.8 3 0 0 3 3 3 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|222475920|ref|YP_002564441.1| - 2.3e-06 27.4 0.1 0.019 14.8 0.0 2.5 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|222475920|ref|YP_002564441.1| - 5.8e-06 26.6 0.0 0.019 15.3 0.0 2.4 2 0 0 2 2 2 2 Transcriptional regulator MarR PF01047.22 gi|222475920|ref|YP_002564441.1| - 0.00037 20.4 0.0 0.068 13.1 0.0 2.6 3 0 0 3 3 3 1 MarR family HTH_5 PF01022.20 gi|222475920|ref|YP_002564441.1| - 0.0013 18.5 0.0 0.86 9.5 0.0 2.6 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|222475920|ref|YP_002564441.1| - 0.0035 17.1 3.5 0.72 9.7 1.0 2.6 2 0 0 2 2 2 2 IclR helix-turn-helix domain HTH_10 PF04967.12 gi|222475920|ref|YP_002564441.1| - 0.0067 16.2 0.1 0.74 9.7 0.0 2.7 2 0 0 2 2 2 1 HTH DNA binding domain HTH_11 PF08279.12 gi|222475920|ref|YP_002564441.1| - 0.0078 16.1 0.1 0.074 13.0 0.0 2.2 2 0 0 2 2 2 1 HTH domain Sigma70_r3 PF04539.16 gi|222475920|ref|YP_002564441.1| - 0.02 15.0 0.2 7.8 6.7 0.0 2.9 3 0 0 3 3 3 0 Sigma-70 region 3 HTH_Crp_2 PF13545.6 gi|222475920|ref|YP_002564441.1| - 0.02 14.8 0.0 0.51 10.4 0.0 2.4 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain GntR PF00392.21 gi|222475920|ref|YP_002564441.1| - 0.022 14.4 3.2 0.3 10.8 0.1 3.4 4 0 0 4 4 4 0 Bacterial regulatory proteins, gntR family HTH_24 PF13412.6 gi|222475920|ref|YP_002564441.1| - 0.062 12.9 0.1 0.55 9.8 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_28 PF13518.6 gi|222475920|ref|YP_002564441.1| - 0.065 13.4 0.1 15 5.8 0.0 3.1 3 0 0 3 3 3 0 Helix-turn-helix domain L_lactis_RepB_C PF06430.12 gi|222475920|ref|YP_002564441.1| - 0.12 12.4 0.4 0.25 11.4 0.1 1.6 2 0 0 2 2 2 0 Lactococcus lactis RepB C-terminus DAG_kinase_N PF14513.6 gi|222475920|ref|YP_002564441.1| - 0.17 12.1 0.0 0.28 11.4 0.0 1.2 1 0 0 1 1 1 0 Diacylglycerol kinase N-terminus Nudix_N_2 PF14803.6 gi|222475921|ref|YP_002564442.1| - 0.00091 19.1 4.0 0.25 11.3 0.2 2.7 3 0 0 3 3 3 2 Nudix N-terminal zinc_ribbon_2 PF13240.6 gi|222475921|ref|YP_002564442.1| - 0.011 15.4 1.6 3.8 7.3 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|222475921|ref|YP_002564442.1| - 0.022 14.8 1.3 0.034 14.2 1.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon RPA_interact_C PF14768.6 gi|222475921|ref|YP_002564442.1| - 0.026 15.1 0.3 0.033 14.7 0.3 1.2 1 0 0 1 1 1 0 Replication protein A interacting C-terminal DUF2318 PF10080.9 gi|222475921|ref|YP_002564442.1| - 0.036 14.2 0.1 0.049 13.8 0.1 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) GFA PF04828.14 gi|222475921|ref|YP_002564442.1| - 0.061 13.7 1.3 1.5 9.2 0.1 2.3 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme DpnI PF06044.12 gi|222475921|ref|YP_002564442.1| - 0.11 12.1 0.7 0.15 11.7 0.7 1.2 1 0 0 1 1 1 0 Dam-replacing family DNA_ligase_ZBD PF03119.16 gi|222475921|ref|YP_002564442.1| - 0.41 10.7 5.1 1 9.4 0.9 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Cys_rich_KTR PF14205.6 gi|222475922|ref|YP_002564443.1| - 0.036 13.9 0.1 0.43 10.4 0.0 2.3 2 0 0 2 2 2 0 Cysteine-rich KTR OrfB_Zn_ribbon PF07282.11 gi|222475922|ref|YP_002564443.1| - 0.12 12.3 0.3 0.24 11.3 0.3 1.5 1 1 0 1 1 1 0 Putative transposase DNA-binding domain DUF3797 PF12677.7 gi|222475922|ref|YP_002564443.1| - 0.86 9.5 4.1 1.3 8.9 0.4 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zf_C2H2_10 PF18414.1 gi|222475922|ref|YP_002564443.1| - 1.9 8.1 5.0 17 5.0 0.1 2.3 2 0 0 2 2 2 0 C2H2 type zinc-finger PQQ_2 PF13360.6 gi|222475926|ref|YP_002564447.1| - 5e-32 111.4 13.3 2.4e-16 60.0 1.3 3.1 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 gi|222475926|ref|YP_002564447.1| - 2.5e-28 97.8 40.4 3.3e-06 27.4 1.4 8.6 8 0 0 8 8 8 8 PQQ-like domain PQQ PF01011.21 gi|222475926|ref|YP_002564447.1| - 1.5e-21 75.2 6.4 9e-05 22.2 0.0 7.0 6 0 0 6 6 6 5 PQQ enzyme repeat DDE_Tnp_1 PF01609.21 gi|222475928|ref|YP_002564449.1| - 1.7e-15 57.3 5.6 6.8e-15 55.3 5.6 1.9 1 1 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|222475928|ref|YP_002564449.1| - 0.00046 20.2 0.6 0.0012 18.8 0.0 2.0 2 0 0 2 2 2 1 Transposase domain (DUF772) DDE_Tnp_1_2 PF13586.6 gi|222475928|ref|YP_002564449.1| - 0.0071 16.7 1.2 0.013 15.8 0.2 1.9 2 1 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.6 gi|222475928|ref|YP_002564449.1| - 0.021 15.1 0.5 0.06 13.6 0.3 1.9 2 0 0 2 2 2 0 Transposase DDE domain ArsP_1 PF03773.13 gi|222475929|ref|YP_002564450.1| - 7.7e-57 192.7 15.3 1e-56 192.3 15.3 1.2 1 0 0 1 1 1 1 Predicted permease YHS PF04945.13 gi|222475929|ref|YP_002564450.1| - 3.1e-17 62.4 4.1 1.5e-11 44.2 0.4 2.4 2 0 0 2 2 2 2 YHS domain zf-FCS PF06467.14 gi|222475929|ref|YP_002564450.1| - 2.6e-05 24.1 0.3 0.083 12.8 0.0 2.4 2 0 0 2 2 2 2 MYM-type Zinc finger with FCS sequence motif RPAP2_Rtr1 PF04181.13 gi|222475929|ref|YP_002564450.1| - 0.031 14.6 0.2 5.5 7.4 0.0 2.3 2 0 0 2 2 2 0 Rtr1/RPAP2 family zf-HIT PF04438.16 gi|222475929|ref|YP_002564450.1| - 0.06 13.2 0.3 0.23 11.4 0.0 2.0 2 0 0 2 2 2 0 HIT zinc finger DUF2256 PF10013.9 gi|222475929|ref|YP_002564450.1| - 1.1 9.4 3.1 16 5.7 0.2 2.7 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2256) SHOCT PF09851.9 gi|222475930|ref|YP_002564451.1| - 1.2e-07 31.3 2.6 1.6e-07 30.8 2.6 1.2 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|222475930|ref|YP_002564451.1| - 0.00012 22.1 1.8 0.00018 21.5 1.8 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) Yip1 PF04893.17 gi|222475930|ref|YP_002564451.1| - 0.0056 16.4 6.1 0.0065 16.2 6.1 1.1 1 0 0 1 1 1 1 Yip1 domain DUF4381 PF14316.6 gi|222475930|ref|YP_002564451.1| - 0.24 11.6 2.6 0.82 9.9 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4381) Halogen_Hydrol PF10112.9 gi|222475930|ref|YP_002564451.1| - 0.58 10.1 2.1 2.4 8.1 2.1 1.8 1 1 0 1 1 1 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein DUF2207 PF09972.9 gi|222475930|ref|YP_002564451.1| - 0.96 8.1 2.8 1.2 7.8 2.8 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DDE_Tnp_1 PF01609.21 gi|222475931|ref|YP_002564452.1| - 0.027 14.1 0.1 0.14 11.8 0.0 2.1 1 1 0 1 1 1 0 Transposase DDE domain ResIII PF04851.15 gi|222475932|ref|YP_002564453.1| - 1.9e-13 50.8 0.0 5.3e-13 49.3 0.0 1.8 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|222475932|ref|YP_002564453.1| - 1.7e-08 34.8 0.0 3.8e-08 33.7 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|222475932|ref|YP_002564453.1| - 1.2e-06 28.5 0.0 0.00067 19.5 0.0 3.5 3 0 0 3 3 3 1 DEAD/DEAH box helicase ERCC3_RAD25_C PF16203.5 gi|222475932|ref|YP_002564453.1| - 0.00075 18.8 0.0 0.0018 17.6 0.0 1.5 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase SNF2_N PF00176.23 gi|222475932|ref|YP_002564453.1| - 0.0093 14.7 0.0 0.021 13.6 0.0 1.5 1 0 0 1 1 1 1 SNF2 family N-terminal domain Phage_integrase PF00589.22 gi|222475935|ref|YP_002564456.1| - 4.2e-07 29.9 0.0 8.1e-07 29.0 0.0 1.5 1 0 0 1 1 1 1 Phage integrase family AAA_31 PF13614.6 gi|222475936|ref|YP_002564457.1| - 1.8e-35 122.4 0.0 2.4e-35 122.0 0.0 1.1 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|222475936|ref|YP_002564457.1| - 2.7e-17 63.0 0.0 3.7e-17 62.6 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.18 gi|222475936|ref|YP_002564457.1| - 3.8e-08 33.1 0.6 4.7e-05 23.0 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 gi|222475936|ref|YP_002564457.1| - 4.5e-08 32.7 0.8 5.7e-06 25.8 0.2 2.3 1 1 1 2 2 2 2 ATPase MipZ ParA PF10609.9 gi|222475936|ref|YP_002564457.1| - 2.1e-07 30.7 0.1 0.0047 16.4 0.0 2.4 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|222475936|ref|YP_002564457.1| - 8.4e-06 25.2 0.3 1.8e-05 24.1 0.3 1.7 1 1 0 1 1 1 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|222475936|ref|YP_002564457.1| - 3.7e-05 23.3 0.3 0.047 13.2 0.0 2.5 2 1 0 2 2 2 2 Cellulose biosynthesis protein BcsQ VirC1 PF07015.11 gi|222475936|ref|YP_002564457.1| - 0.032 13.5 0.1 0.032 13.5 0.1 2.4 3 0 0 3 3 3 0 VirC1 protein RuvX PF03652.15 gi|222475936|ref|YP_002564457.1| - 0.071 13.5 0.0 0.19 12.1 0.0 1.7 1 0 0 1 1 1 0 Holliday junction resolvase Thioredoxin PF00085.20 gi|222475938|ref|YP_002564459.1| - 3.3e-07 30.2 0.0 4.4e-07 29.8 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|222475938|ref|YP_002564459.1| - 5.8e-06 26.7 0.0 6.7e-06 26.5 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_5 PF13743.6 gi|222475938|ref|YP_002564459.1| - 0.015 15.0 0.0 0.026 14.2 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin Thioredoxin_3 PF13192.6 gi|222475938|ref|YP_002564459.1| - 0.071 13.2 0.1 0.12 12.5 0.0 1.4 1 1 0 1 1 1 0 Thioredoxin domain Thioredoxin_4 PF13462.6 gi|222475938|ref|YP_002564459.1| - 0.16 12.1 0.0 0.17 12.0 0.0 1.1 1 0 0 1 1 1 0 Thioredoxin SHOCT PF09851.9 gi|222475939|ref|YP_002564460.1| - 4.7e-08 32.5 3.7 6.9e-08 32.0 3.7 1.2 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|222475939|ref|YP_002564460.1| - 0.00012 22.0 1.1 0.00018 21.5 1.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) DUF4381 PF14316.6 gi|222475939|ref|YP_002564460.1| - 0.018 15.3 1.3 0.019 15.2 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4381) Insulin_TMD PF17870.1 gi|222475939|ref|YP_002564460.1| - 0.038 14.1 0.8 4.7 7.4 0.2 2.1 2 0 0 2 2 2 0 Insulin receptor trans-membrane segment Phage_holin_3_6 PF07332.11 gi|222475939|ref|YP_002564460.1| - 0.084 12.9 1.6 0.13 12.3 1.6 1.2 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF2207 PF09972.9 gi|222475939|ref|YP_002564460.1| - 0.1 11.4 1.6 0.11 11.2 1.6 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF302 PF03625.14 gi|222475940|ref|YP_002564461.1| - 2.6e-27 94.5 0.0 3.7e-27 94.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF302 Cu-oxidase_3 PF07732.15 gi|222475942|ref|YP_002564463.1| - 1.1e-42 144.8 0.5 1.7e-34 118.3 0.0 3.3 3 0 0 3 3 3 3 Multicopper oxidase Cu-oxidase_2 PF07731.14 gi|222475942|ref|YP_002564463.1| - 2.2e-38 131.1 7.1 1e-25 90.1 3.8 4.8 3 2 0 3 3 3 3 Multicopper oxidase Cu-oxidase PF00394.22 gi|222475942|ref|YP_002564463.1| - 9e-29 100.6 0.0 9.2e-25 87.6 0.0 2.8 3 0 0 3 3 3 2 Multicopper oxidase Cupredoxin_1 PF13473.6 gi|222475942|ref|YP_002564463.1| - 8.6e-08 32.2 0.0 0.034 14.2 0.0 3.7 3 1 0 3 3 3 3 Cupredoxin-like domain Inhibitor_I42 PF09394.10 gi|222475942|ref|YP_002564463.1| - 0.00067 20.0 0.0 4.8 7.7 0.0 3.9 3 1 0 3 3 3 2 Chagasin family peptidase inhibitor I42 TAT_signal PF10518.9 gi|222475942|ref|YP_002564463.1| - 0.014 15.2 0.8 0.014 15.2 0.8 2.1 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Copper-bind PF00127.20 gi|222475942|ref|YP_002564463.1| - 0.022 15.2 0.0 7.2 7.1 0.0 3.5 3 1 0 3 3 3 0 Copper binding proteins, plastocyanin/azurin family Lactamase_B PF00753.27 gi|222475943|ref|YP_002564464.1| - 1.2e-13 51.6 7.7 1.7e-13 51.0 6.5 1.8 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.20 gi|222475943|ref|YP_002564464.1| - 1.1e-11 45.2 0.0 2.4e-11 44.1 0.0 1.6 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B_2 PF12706.7 gi|222475943|ref|YP_002564464.1| - 0.00042 19.9 0.7 0.00096 18.7 0.7 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain 5_nucleotid_C PF02872.18 gi|222475944|ref|YP_002564465.1| - 1.7e-19 70.6 0.0 3.5e-19 69.6 0.0 1.4 1 0 0 1 1 1 1 5'-nucleotidase, C-terminal domain Metallophos PF00149.28 gi|222475944|ref|YP_002564465.1| - 2.8e-06 28.0 0.2 4.7e-06 27.2 0.2 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Glyco_transf_4 PF13439.6 gi|222475944|ref|YP_002564465.1| - 0.13 12.2 0.0 0.34 10.9 0.0 1.7 1 0 0 1 1 1 0 Glycosyltransferase Family 4 TauE PF01925.19 gi|222475945|ref|YP_002564466.1| - 1.5e-19 70.6 31.8 1.7e-19 70.4 31.8 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE PhrC_PhrF PF11131.8 gi|222475945|ref|YP_002564466.1| - 0.45 10.1 5.9 0.13 11.8 0.6 2.5 2 0 0 2 2 2 0 Rap-phr extracellular signalling TssN PF17555.2 gi|222475945|ref|YP_002564466.1| - 1.9 7.8 7.2 2.6 7.3 4.7 2.0 2 0 0 2 2 2 0 Type VI secretion system, TssN DUF326 PF03860.16 gi|222475946|ref|YP_002564467.1| - 1.8e-08 34.1 45.5 0.003 17.5 11.0 5.2 5 0 0 5 5 5 5 Domain of Unknown Function (DUF326) MRP-S27 PF10037.9 gi|222475946|ref|YP_002564467.1| - 0.015 14.2 0.2 0.017 14.0 0.2 1.0 1 0 0 1 1 1 0 Mitochondrial 28S ribosomal protein S27 HTH_38 PF13936.6 gi|222475946|ref|YP_002564467.1| - 0.16 11.7 0.4 0.5 10.2 0.0 2.0 2 1 0 2 2 2 0 Helix-turn-helix domain HSCB_C PF07743.13 gi|222475946|ref|YP_002564467.1| - 0.72 10.4 3.7 0.56 10.7 1.3 2.0 2 0 0 2 2 2 0 HSCB C-terminal oligomerisation domain DUF4900 PF16241.5 gi|222475947|ref|YP_002564468.1| - 0.075 13.4 0.1 0.1 12.9 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4900) Polyketide_cyc2 PF10604.9 gi|222475948|ref|YP_002564469.1| - 0.0001 22.6 2.2 0.00029 21.1 2.2 1.7 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Aconitase PF00330.20 gi|222475949|ref|YP_002564470.1| - 1.7e-171 571.3 0.0 2.6e-171 570.7 0.0 1.2 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|222475949|ref|YP_002564470.1| - 1.2e-40 138.9 0.0 2e-40 138.2 0.0 1.4 1 0 0 1 1 1 1 Aconitase C-terminal domain DUF2080 PF09853.9 gi|222475950|ref|YP_002564471.1| - 1.3e-05 24.8 0.0 1.4e-05 24.7 0.0 1.1 1 0 0 1 1 1 1 Putative transposon-encoded protein (DUF2080) DDE_Tnp_1 PF01609.21 gi|222475951|ref|YP_002564472.1| - 8.2e-23 81.2 0.0 1.2e-22 80.7 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.6 gi|222475951|ref|YP_002564472.1| - 0.0015 18.7 0.0 0.0027 17.9 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain Mur_ligase_M PF08245.12 gi|222475952|ref|YP_002564473.1| - 5.2e-05 23.3 0.0 9.2e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 Mur ligase middle domain Caps_synth_CapC PF14102.6 gi|222475953|ref|YP_002564474.1| - 3.8e-26 91.9 39.7 7.1e-22 78.1 9.2 3.4 3 1 0 3 3 3 2 Capsule biosynthesis CapC AmoC PF04896.12 gi|222475953|ref|YP_002564474.1| - 1.2 8.4 6.7 0.054 12.8 0.8 1.7 2 0 0 2 2 2 0 Ammonia monooxygenase/methane monooxygenase, subunit C Aldedh PF00171.22 gi|222475955|ref|YP_002564476.1| - 1e-171 571.6 0.0 1.2e-171 571.4 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF1487 PF07368.11 gi|222475955|ref|YP_002564476.1| - 0.12 11.8 0.0 0.21 11.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1487) ADH_zinc_N PF00107.26 gi|222475956|ref|YP_002564477.1| - 4.6e-27 94.5 0.3 7e-27 94.0 0.3 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|222475956|ref|YP_002564477.1| - 3.3e-25 88.1 1.6 4.4e-25 87.7 0.5 1.8 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.6 gi|222475956|ref|YP_002564477.1| - 3.5e-05 24.9 0.0 7.5e-05 23.8 0.0 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 gi|222475956|ref|YP_002564477.1| - 0.00022 20.6 2.0 0.0003 20.2 2.0 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.19 gi|222475956|ref|YP_002564477.1| - 0.00082 18.8 0.1 0.0014 18.0 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Glu_dehyd_C PF16912.5 gi|222475956|ref|YP_002564477.1| - 0.0021 17.6 0.5 0.0035 16.8 0.5 1.4 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus Methyltransf_25 PF13649.6 gi|222475956|ref|YP_002564477.1| - 0.014 16.1 0.6 0.058 14.1 0.3 2.2 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_11 PF08241.12 gi|222475956|ref|YP_002564477.1| - 0.026 15.2 0.1 0.27 11.9 0.2 2.4 2 1 0 2 2 2 0 Methyltransferase domain TrkA_N PF02254.18 gi|222475956|ref|YP_002564477.1| - 0.089 13.1 1.2 0.2 11.9 0.9 1.8 2 0 0 2 2 2 0 TrkA-N domain Lipoprotein_16 PF03923.13 gi|222475957|ref|YP_002564478.1| - 0.13 12.0 0.0 0.13 11.9 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized lipoprotein TOBE PF03459.17 gi|222475957|ref|YP_002564478.1| - 0.26 11.6 1.4 0.28 11.5 0.4 1.5 2 0 0 2 2 2 0 TOBE domain DDE_Tnp_1 PF01609.21 gi|222475958|ref|YP_002564479.1| - 8.2e-23 81.2 0.0 1.2e-22 80.7 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.6 gi|222475958|ref|YP_002564479.1| - 0.0015 18.7 0.0 0.0027 17.9 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain OrfB_Zn_ribbon PF07282.11 gi|222475959|ref|YP_002564480.1| - 3.1e-22 78.3 0.2 6.5e-22 77.2 0.2 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|222475959|ref|YP_002564480.1| - 3.4e-14 53.1 0.1 3.4e-14 53.1 0.1 1.8 2 0 0 2 2 2 1 Probable transposase HTH_OrfB_IS605 PF12323.8 gi|222475959|ref|YP_002564480.1| - 6.9e-11 41.5 0.0 1.4e-10 40.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain PP1c_bdg PF10488.9 gi|222475959|ref|YP_002564480.1| - 0.0044 16.6 0.1 0.01 15.3 0.1 1.5 1 0 0 1 1 1 1 Phosphatase-1 catalytic subunit binding region Med9 PF07544.13 gi|222475959|ref|YP_002564480.1| - 0.0044 17.1 6.0 0.03 14.4 0.2 2.4 2 0 0 2 2 2 1 RNA polymerase II transcription mediator complex subunit 9 DHC_N1 PF08385.12 gi|222475959|ref|YP_002564480.1| - 0.047 12.3 0.1 0.074 11.7 0.1 1.2 1 0 0 1 1 1 0 Dynein heavy chain, N-terminal region 1 DZR PF12773.7 gi|222475959|ref|YP_002564480.1| - 0.055 13.5 1.9 0.11 12.5 1.9 1.5 1 0 0 1 1 1 0 Double zinc ribbon Spc7 PF08317.11 gi|222475959|ref|YP_002564480.1| - 0.066 12.1 3.9 0.61 8.9 0.6 2.1 2 0 0 2 2 2 0 Spc7 kinetochore protein Zn-ribbon_8 PF09723.10 gi|222475959|ref|YP_002564480.1| - 0.16 12.1 6.3 0.49 10.6 1.2 2.5 1 1 1 2 2 2 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|222475959|ref|YP_002564480.1| - 0.25 10.9 1.1 4.1 7.0 0.1 2.5 2 0 0 2 2 2 0 TFIIB zinc-binding Ribosomal_L37e PF01907.19 gi|222475959|ref|YP_002564480.1| - 0.44 10.7 3.3 3.9 7.7 3.0 2.3 1 1 1 2 2 2 0 Ribosomal protein L37e Jnk-SapK_ap_N PF09744.9 gi|222475959|ref|YP_002564480.1| - 2.3 8.4 7.0 3.2 8.0 1.5 2.4 2 0 0 2 2 2 0 JNK_SAPK-associated protein-1 Hydrolase PF00702.26 gi|222475960|ref|YP_002564481.1| - 5.8e-50 170.5 4.4 1.4e-49 169.2 4.4 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase E1-E2_ATPase PF00122.20 gi|222475960|ref|YP_002564481.1| - 4e-47 160.1 3.5 1.4e-46 158.3 3.5 2.0 1 0 0 1 1 1 1 E1-E2 ATPase HMA PF00403.26 gi|222475960|ref|YP_002564481.1| - 4.5e-29 100.7 0.0 1.9e-14 53.8 0.0 3.0 2 0 0 2 2 2 2 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|222475960|ref|YP_002564481.1| - 5.1e-07 29.7 1.6 0.018 14.8 0.9 2.4 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|222475960|ref|YP_002564481.1| - 0.00031 21.2 0.6 0.00079 19.9 0.1 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|222475960|ref|YP_002564481.1| - 0.00091 19.3 0.5 0.012 15.7 0.0 3.2 4 0 0 4 4 4 1 Haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|222475962|ref|YP_002564483.1| - 0.003 18.0 0.4 0.0056 17.1 0.4 1.5 1 0 0 1 1 1 1 Heavy-metal-associated domain E1-E2_ATPase PF00122.20 gi|222475963|ref|YP_002564484.1| - 7.9e-50 168.9 3.4 7.9e-50 168.9 3.4 2.8 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.26 gi|222475963|ref|YP_002564484.1| - 5.6e-41 141.1 5.6 9.4e-41 140.4 5.6 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|222475963|ref|YP_002564484.1| - 1.2e-06 28.4 0.2 0.0012 18.6 0.1 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|222475963|ref|YP_002564484.1| - 5.3e-05 23.4 0.1 0.0011 19.1 0.1 2.6 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|222475963|ref|YP_002564484.1| - 0.00046 20.7 0.1 0.0014 19.1 0.1 1.9 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Zip PF02535.22 gi|222475963|ref|YP_002564484.1| - 0.093 11.9 10.1 0.53 9.4 10.1 2.2 1 1 0 1 1 1 0 ZIP Zinc transporter PTPS PF01242.19 gi|222475964|ref|YP_002564485.1| - 9.9e-22 77.2 0.0 1.3e-21 76.8 0.0 1.1 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase Radical_SAM PF04055.21 gi|222475965|ref|YP_002564486.1| - 1.8e-22 80.5 0.5 4.2e-22 79.3 0.5 1.8 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|222475965|ref|YP_002564486.1| - 2.4e-15 56.7 0.0 7.9e-15 55.0 0.0 1.8 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|222475965|ref|YP_002564486.1| - 8.6e-11 42.3 0.0 1.7e-10 41.3 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain TP_methylase PF00590.20 gi|222475965|ref|YP_002564486.1| - 0.0085 16.1 0.1 0.034 14.1 0.0 1.8 2 0 0 2 2 2 1 Tetrapyrrole (Corrin/Porphyrin) Methylases QueC PF06508.13 gi|222475966|ref|YP_002564487.1| - 2.5e-71 239.5 0.0 2.9e-71 239.3 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|222475966|ref|YP_002564487.1| - 0.00022 20.9 0.0 0.00034 20.2 0.0 1.3 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.16 gi|222475966|ref|YP_002564487.1| - 0.0037 16.1 0.0 0.0051 15.7 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase ATG11 PF10377.9 gi|222475966|ref|YP_002564487.1| - 0.15 12.1 0.0 0.21 11.7 0.0 1.2 1 0 0 1 1 1 0 Autophagy-related protein 11 HTH_24 PF13412.6 gi|222475967|ref|YP_002564488.1| - 6.4e-12 44.8 0.2 1.2e-11 44.0 0.2 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|222475967|ref|YP_002564488.1| - 3.3e-11 43.0 0.1 5.5e-11 42.3 0.1 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_IclR PF09339.10 gi|222475967|ref|YP_002564488.1| - 1.9e-05 24.4 0.0 4.5e-05 23.2 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|222475967|ref|YP_002564488.1| - 3.4e-05 23.6 0.0 6e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|222475967|ref|YP_002564488.1| - 0.00026 20.8 0.0 0.00084 19.2 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|222475967|ref|YP_002564488.1| - 0.00043 20.3 0.0 0.0009 19.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|222475967|ref|YP_002564488.1| - 0.00079 19.2 0.0 0.0013 18.5 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_27 PF13463.6 gi|222475967|ref|YP_002564488.1| - 0.0017 18.8 0.0 0.0034 17.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|222475967|ref|YP_002564488.1| - 0.013 15.4 0.0 0.021 14.7 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_5 PF01022.20 gi|222475967|ref|YP_002564488.1| - 0.023 14.6 0.0 0.039 13.8 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family GerE PF00196.19 gi|222475967|ref|YP_002564488.1| - 0.05 13.1 0.0 0.091 12.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family FliG_M PF14841.6 gi|222475967|ref|YP_002564488.1| - 0.054 13.7 0.0 8.4 6.7 0.0 2.8 2 0 0 2 2 2 0 FliG middle domain GYD PF08734.11 gi|222475967|ref|YP_002564488.1| - 0.055 13.4 0.1 0.096 12.6 0.1 1.4 1 0 0 1 1 1 0 GYD domain HTH_11 PF08279.12 gi|222475967|ref|YP_002564488.1| - 0.083 12.8 0.0 0.19 11.7 0.0 1.7 1 0 0 1 1 1 0 HTH domain DUF2250 PF10007.9 gi|222475967|ref|YP_002564488.1| - 0.14 12.3 0.0 0.41 10.8 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) Rio2_N PF09202.11 gi|222475967|ref|YP_002564488.1| - 0.15 12.3 0.0 0.49 10.7 0.0 1.9 2 0 0 2 2 2 0 Rio2, N-terminal Sulfolobus_pRN PF05584.11 gi|222475967|ref|YP_002564488.1| - 0.17 11.9 0.0 0.37 10.9 0.0 1.5 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein MFS_1 PF07690.16 gi|222475968|ref|YP_002564489.1| - 0.0039 16.2 6.1 0.0053 15.7 6.1 1.3 1 1 0 1 1 1 1 Major Facilitator Superfamily DDE_Tnp_1 PF01609.21 gi|222475969|ref|YP_002564490.1| - 0.0003 20.5 0.5 0.0026 17.4 0.5 2.3 1 1 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|222475969|ref|YP_002564490.1| - 0.14 12.2 2.0 0.23 11.5 0.0 2.3 3 0 0 3 3 3 0 Transposase domain (DUF772) DDE_Tnp_1 PF01609.21 gi|222475971|ref|YP_002564492.1| - 5.2e-13 49.1 4.1 4.1e-12 46.2 4.1 2.0 1 1 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|222475971|ref|YP_002564492.1| - 2.1e-05 24.4 0.0 6e-05 23.0 0.0 1.8 1 0 0 1 1 1 1 Transposase domain (DUF772) ParBc PF02195.18 gi|222475972|ref|YP_002564493.1| - 0.0019 18.5 0.0 0.0025 18.1 0.0 1.2 1 0 0 1 1 1 1 ParB-like nuclease domain Terminase_5 PF06056.12 gi|222475972|ref|YP_002564493.1| - 0.023 14.6 0.0 0.03 14.2 0.0 1.2 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) Insulin_TMD PF17870.1 gi|222475973|ref|YP_002564494.1| - 0.0041 17.2 0.5 0.43 10.7 0.1 2.3 2 0 0 2 2 2 2 Insulin receptor trans-membrane segment NADHdh-2_N PF12155.8 gi|222475973|ref|YP_002564494.1| - 0.08 13.3 2.8 0.09 13.2 2.6 1.4 1 1 0 1 1 1 0 NADH dehydrogenase subunit 2 N-terminal HRG PF16954.5 gi|222475973|ref|YP_002564494.1| - 0.18 12.2 0.2 0.18 12.2 0.2 2.6 4 0 0 4 4 4 0 Haem-transporter, endosomal/lysosomal, haem-responsive gene DDE_Tnp_1 PF01609.21 gi|222475974|ref|YP_002564495.1| - 0.031 13.9 0.1 0.085 12.5 0.1 1.7 1 1 0 1 1 1 0 Transposase DDE domain UPF0236 PF06782.11 gi|222475975|ref|YP_002564496.1| - 9.7e-06 24.5 0.0 0.00026 19.8 0.0 2.1 2 0 0 2 2 2 2 Uncharacterised protein family (UPF0236) Transposase_mut PF00872.18 gi|222475975|ref|YP_002564496.1| - 0.00037 19.4 0.2 1 8.1 0.0 2.9 2 2 0 2 2 2 2 Transposase, Mutator family MarR_2 PF12802.7 gi|222475979|ref|YP_002564500.1| - 0.00015 21.5 0.0 0.00029 20.6 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|222475979|ref|YP_002564500.1| - 0.00055 20.0 0.0 0.00093 19.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|222475979|ref|YP_002564500.1| - 0.0063 16.4 0.0 0.012 15.5 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|222475979|ref|YP_002564500.1| - 0.062 13.2 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_43 PF09904.9 gi|222475979|ref|YP_002564500.1| - 0.064 13.2 0.0 0.15 12.1 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix MarR PF01047.22 gi|222475979|ref|YP_002564500.1| - 0.18 11.8 0.0 0.38 10.7 0.0 1.5 1 0 0 1 1 1 0 MarR family DDE_Tnp_1 PF01609.21 gi|222475980|ref|YP_002564501.1| - 2.1e-29 102.7 0.2 2.6e-29 102.4 0.2 1.1 1 0 0 1 1 1 1 Transposase DDE domain Corona_3 PF04694.12 gi|222475980|ref|YP_002564501.1| - 0.0036 17.6 0.1 0.0096 16.2 0.1 1.7 1 0 0 1 1 1 1 Coronavirus ORF3 protein CorA PF01544.18 gi|222475982|ref|YP_002564503.1| - 0.021 14.1 1.6 0.024 14.0 1.6 1.0 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein XhlA PF10779.9 gi|222475982|ref|YP_002564503.1| - 0.063 13.5 0.1 0.53 10.5 0.2 2.0 2 0 0 2 2 2 0 Haemolysin XhlA APH PF01636.23 gi|222475982|ref|YP_002564503.1| - 0.066 13.1 3.2 0.075 12.9 3.2 1.1 1 0 0 1 1 1 0 Phosphotransferase enzyme family PSK_trans_fac PF07704.11 gi|222475982|ref|YP_002564503.1| - 0.23 12.3 2.8 0.48 11.2 2.8 1.7 1 1 0 1 1 1 0 Rv0623-like transcription factor LVIVD PF08309.11 gi|222475985|ref|YP_002564506.1| - 0.13 11.6 0.3 0.26 10.7 0.3 1.5 1 0 0 1 1 1 0 LVIVD repeat HTH_23 PF13384.6 gi|222475986|ref|YP_002564507.1| - 8.8e-05 22.2 0.0 0.00033 20.3 0.0 2.0 1 0 0 1 1 1 1 Homeodomain-like domain MarR_2 PF12802.7 gi|222475986|ref|YP_002564507.1| - 0.00012 21.8 0.1 0.00032 20.5 0.1 1.7 1 1 0 1 1 1 1 MarR family GntR PF00392.21 gi|222475986|ref|YP_002564507.1| - 0.0032 17.1 0.0 0.048 13.3 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_1 PF00126.27 gi|222475986|ref|YP_002564507.1| - 0.0039 17.1 0.2 0.015 15.2 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family Rrf2 PF02082.20 gi|222475986|ref|YP_002564507.1| - 0.0043 17.4 0.0 0.11 12.9 0.0 2.4 2 0 0 2 2 2 1 Transcriptional regulator HTH_28 PF13518.6 gi|222475986|ref|YP_002564507.1| - 0.0044 17.1 1.6 0.0087 16.2 0.0 2.3 3 0 0 3 3 3 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|222475986|ref|YP_002564507.1| - 0.005 17.0 0.0 0.022 14.9 0.0 2.0 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.19 gi|222475986|ref|YP_002564507.1| - 0.015 15.2 0.0 0.029 14.3 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB RPA_C PF08784.11 gi|222475986|ref|YP_002564507.1| - 0.02 15.6 0.0 0.036 14.7 0.0 1.5 1 0 0 1 1 1 0 Replication protein A C terminal DUF2250 PF10007.9 gi|222475986|ref|YP_002564507.1| - 0.028 14.5 0.0 0.046 13.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_Crp_2 PF13545.6 gi|222475986|ref|YP_002564507.1| - 0.039 13.9 0.0 0.12 12.4 0.0 1.8 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|222475986|ref|YP_002564507.1| - 0.05 13.2 0.0 0.09 12.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding LPD11 PF18824.1 gi|222475986|ref|YP_002564507.1| - 0.5 10.5 2.2 18 5.5 0.4 2.3 1 1 1 2 2 2 0 Large polyvalent protein-associated domain 11 DUF790 PF05626.11 gi|222475987|ref|YP_002564508.1| - 6e-138 459.8 0.0 6.9e-138 459.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF790) ResIII PF04851.15 gi|222475988|ref|YP_002564509.1| - 3.1e-23 82.6 0.0 1.2e-22 80.7 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit ERCC3_RAD25_C PF16203.5 gi|222475988|ref|YP_002564509.1| - 1.2e-22 80.3 0.3 1.9e-22 79.7 0.3 1.2 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase Helicase_C PF00271.31 gi|222475988|ref|YP_002564509.1| - 1.5e-17 63.9 0.1 1.5e-17 63.9 0.1 2.1 3 0 0 3 3 3 1 Helicase conserved C-terminal domain XPB_DRD PF18458.1 gi|222475988|ref|YP_002564509.1| - 3.3e-12 46.1 1.7 1.7e-11 43.8 1.7 2.3 1 0 0 1 1 1 1 Xeroderma pigmentosum group B helicase damage recognition domain DEAD PF00270.29 gi|222475988|ref|YP_002564509.1| - 3.2e-08 33.5 0.0 7.4e-08 32.3 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase IstB_IS21 PF01695.17 gi|222475988|ref|YP_002564509.1| - 0.019 14.7 0.0 0.12 12.1 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein Helicase_C_2 PF13307.6 gi|222475988|ref|YP_002564509.1| - 0.16 12.1 0.3 5 7.3 0.0 2.7 2 1 1 3 3 3 0 Helicase C-terminal domain Calci_bind_CcbP PF11535.8 gi|222475989|ref|YP_002564510.1| - 1.8e-42 144.1 0.5 2.1e-42 143.9 0.5 1.0 1 0 0 1 1 1 1 Calcium binding TPR_11 PF13414.6 gi|222475990|ref|YP_002564511.1| - 4.5e-07 29.5 2.2 0.0038 16.9 0.0 3.4 3 0 0 3 3 3 1 TPR repeat TPR_14 PF13428.6 gi|222475990|ref|YP_002564511.1| - 7.3e-05 23.3 7.6 0.0035 18.0 0.0 4.6 3 1 1 4 4 4 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|222475990|ref|YP_002564511.1| - 0.00018 22.1 2.3 0.0021 18.7 0.8 3.2 2 1 0 2 2 1 1 Tetratricopeptide repeat BTAD PF03704.17 gi|222475990|ref|YP_002564511.1| - 0.00054 20.4 1.3 0.09 13.2 0.5 3.3 2 1 1 3 3 3 1 Bacterial transcriptional activator domain TPR_6 PF13174.6 gi|222475990|ref|YP_002564511.1| - 0.00065 20.2 1.1 0.71 10.6 0.0 3.3 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_2 PF07719.17 gi|222475990|ref|YP_002564511.1| - 0.00088 19.2 5.9 1.1 9.5 0.0 4.0 4 0 0 4 4 4 1 Tetratricopeptide repeat zf-Di19 PF05605.12 gi|222475990|ref|YP_002564511.1| - 0.0018 18.5 0.2 0.0042 17.3 0.2 1.6 1 0 0 1 1 1 1 Drought induced 19 protein (Di19), zinc-binding TPR_10 PF13374.6 gi|222475990|ref|YP_002564511.1| - 0.0022 17.8 2.4 3.7 7.5 0.1 3.5 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|222475990|ref|YP_002564511.1| - 0.0045 17.1 0.2 4.1 7.9 0.0 3.0 3 0 0 3 3 2 1 Tetratricopeptide repeat zf-C2H2 PF00096.26 gi|222475990|ref|YP_002564511.1| - 0.0053 17.1 0.1 0.01 16.3 0.1 1.5 1 0 0 1 1 1 1 Zinc finger, C2H2 type NARP1 PF12569.8 gi|222475990|ref|YP_002564511.1| - 0.0054 15.7 0.0 0.01 14.8 0.0 1.3 1 0 0 1 1 1 1 NMDA receptor-regulated protein 1 zf-C2H2_4 PF13894.6 gi|222475990|ref|YP_002564511.1| - 0.0054 17.5 0.1 0.014 16.2 0.1 1.7 1 0 0 1 1 1 1 C2H2-type zinc finger TPR_12 PF13424.6 gi|222475990|ref|YP_002564511.1| - 0.0067 16.7 2.6 0.029 14.7 0.6 3.1 2 1 1 3 3 3 1 Tetratricopeptide repeat TPR_19 PF14559.6 gi|222475990|ref|YP_002564511.1| - 0.0079 16.7 1.0 1.1 9.9 0.0 3.1 3 0 0 3 3 2 1 Tetratricopeptide repeat SHNi-TPR PF10516.9 gi|222475990|ref|YP_002564511.1| - 0.028 13.9 0.3 0.56 9.7 0.2 2.7 2 0 0 2 2 2 0 SHNi-TPR Toxin_25 PF08095.11 gi|222475990|ref|YP_002564511.1| - 0.034 14.1 0.6 2.7 8.0 0.1 2.5 2 0 0 2 2 2 0 Hefutoxin family Porphobil_deam PF01379.20 gi|222475990|ref|YP_002564511.1| - 0.047 13.2 0.4 0.071 12.6 0.4 1.2 1 0 0 1 1 1 0 Porphobilinogen deaminase, dipyromethane cofactor binding domain zf-C2H2_9 PF16293.5 gi|222475990|ref|YP_002564511.1| - 0.049 13.5 1.1 0.096 12.5 0.0 2.1 3 0 0 3 3 2 0 C2H2 type zinc-finger (1 copy) zf-C2H2_jaz PF12171.8 gi|222475990|ref|YP_002564511.1| - 0.057 13.7 0.0 0.12 12.7 0.0 1.5 1 0 0 1 1 1 0 Zinc-finger double-stranded RNA-binding FOXP-CC PF16159.5 gi|222475990|ref|YP_002564511.1| - 0.06 14.0 0.9 0.38 11.4 0.1 2.8 4 0 0 4 4 3 0 FOXP coiled-coil domain zf-C2HC_2 PF13913.6 gi|222475990|ref|YP_002564511.1| - 0.073 13.0 0.1 0.17 11.9 0.1 1.5 1 0 0 1 1 1 0 zinc-finger of a C2HC-type LEM PF03020.15 gi|222475990|ref|YP_002564511.1| - 0.13 11.8 0.0 0.33 10.5 0.0 1.7 1 0 0 1 1 1 0 LEM domain TPR_7 PF13176.6 gi|222475990|ref|YP_002564511.1| - 0.31 11.1 3.2 1.8 8.8 0.4 3.4 3 1 0 3 3 2 0 Tetratricopeptide repeat DUF749 PF05370.11 gi|222475991|ref|YP_002564512.1| - 0.079 13.1 0.0 0.1 12.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF749) DDE_Tnp_1 PF01609.21 gi|222475992|ref|YP_002564513.1| - 5.1e-14 52.4 6.6 4.9e-13 49.2 6.6 2.1 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|222475992|ref|YP_002564513.1| - 0.00021 21.4 0.2 0.00034 20.7 0.2 1.3 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|222475992|ref|YP_002564513.1| - 0.00045 20.2 0.1 0.0013 18.7 0.1 1.8 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_2 PF13586.6 gi|222475992|ref|YP_002564513.1| - 0.0043 17.4 0.9 0.0081 16.5 0.3 1.8 2 0 0 2 2 2 1 Transposase DDE domain PGF-CTERM PF18204.1 gi|222475993|ref|YP_002564514.1| - 8.2e-05 22.4 2.7 0.00023 21.0 2.7 1.8 1 0 0 1 1 1 1 PGF-CTERM motif CENP-B_dimeris PF09026.10 gi|222475993|ref|YP_002564514.1| - 0.014 15.7 0.3 0.033 14.6 0.3 1.6 1 0 0 1 1 1 0 Centromere protein B dimerisation domain DUF1616 PF07760.11 gi|222475993|ref|YP_002564514.1| - 0.074 12.4 11.0 0.11 11.9 5.5 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF1616) Big_7 PF17957.1 gi|222475993|ref|YP_002564514.1| - 1.6 9.5 11.4 0.37 11.6 6.6 2.5 2 1 0 2 2 2 0 Bacterial Ig domain BACON PF13004.7 gi|222475993|ref|YP_002564514.1| - 3.3 7.8 7.8 2 8.5 0.1 3.0 2 1 0 2 2 2 0 Putative binding domain, N-terminal DUF4179 PF13786.6 gi|222475993|ref|YP_002564514.1| - 7.1 7.2 8.0 0.19 12.2 1.0 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF4179) BatA PF07584.11 gi|222475995|ref|YP_002564516.1| - 0.024 15.0 0.2 0.33 11.3 0.0 2.0 2 0 0 2 2 2 0 Aerotolerance regulator N-terminal DUF3043 PF11241.8 gi|222475995|ref|YP_002564516.1| - 0.1 12.6 1.0 0.13 12.3 1.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3043) ParE_toxin PF05016.15 gi|222475998|ref|YP_002564519.1| - 0.043 14.4 0.3 0.091 13.4 0.3 1.5 1 1 0 1 1 1 0 ParE toxin of type II toxin-antitoxin system, parDE RHH_1 PF01402.21 gi|222475999|ref|YP_002564520.1| - 0.0027 17.6 0.0 0.0046 16.8 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|222475999|ref|YP_002564520.1| - 0.033 14.4 0.1 0.042 14.0 0.1 1.2 1 1 0 1 1 1 0 Ribbon-Helix-Helix transcriptional regulator family SHOCT PF09851.9 gi|222476001|ref|YP_002564522.1| - 0.078 12.7 0.2 0.078 12.7 0.2 2.7 4 0 0 4 4 4 0 Short C-terminal domain ZapD PF07072.11 gi|222476002|ref|YP_002564523.1| - 0.11 12.2 0.0 0.3 10.8 0.0 1.6 2 0 0 2 2 2 0 Cell division protein AAA_31 PF13614.6 gi|222476003|ref|YP_002564524.1| - 1.2e-28 100.2 0.0 1.8e-28 99.7 0.0 1.1 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|222476003|ref|YP_002564524.1| - 5.7e-11 42.6 0.0 1.3e-10 41.5 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|222476003|ref|YP_002564524.1| - 2.5e-08 33.7 0.3 1.8e-07 30.8 0.1 2.0 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase MipZ PF09140.11 gi|222476003|ref|YP_002564524.1| - 1.2e-07 31.3 0.2 8.5e-05 22.0 0.3 3.0 2 1 0 2 2 2 1 ATPase MipZ CBP_BcsQ PF06564.12 gi|222476003|ref|YP_002564524.1| - 1.1e-06 28.3 0.0 2e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 gi|222476003|ref|YP_002564524.1| - 0.00018 20.8 0.0 0.0019 17.4 0.0 2.3 3 0 0 3 3 3 1 Anion-transporting ATPase VirC1 PF07015.11 gi|222476003|ref|YP_002564524.1| - 0.0026 17.1 0.0 0.79 9.0 0.0 2.2 2 0 0 2 2 2 2 VirC1 protein Fer4_NifH PF00142.18 gi|222476003|ref|YP_002564524.1| - 0.0087 15.5 0.0 0.29 10.5 0.0 2.3 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CLP1_P PF16575.5 gi|222476003|ref|YP_002564524.1| - 0.012 15.4 0.1 0.032 14.0 0.0 1.7 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop APS_kinase PF01583.20 gi|222476003|ref|YP_002564524.1| - 0.012 15.5 0.1 0.026 14.4 0.1 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase Glyco_transf_4 PF13439.6 gi|222476003|ref|YP_002564524.1| - 0.087 12.8 0.0 2.1 8.3 0.0 2.1 2 0 0 2 2 2 0 Glycosyltransferase Family 4 SRP54 PF00448.22 gi|222476003|ref|YP_002564524.1| - 0.12 12.0 0.1 4.4 6.9 0.0 2.4 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain HTH_23 PF13384.6 gi|222476004|ref|YP_002564525.1| - 3.8e-05 23.3 0.2 0.00016 21.3 0.0 2.1 2 0 0 2 2 2 1 Homeodomain-like domain MarR_2 PF12802.7 gi|222476004|ref|YP_002564525.1| - 0.00035 20.4 0.2 0.00083 19.2 0.1 1.7 1 1 1 2 2 2 1 MarR family HTH_28 PF13518.6 gi|222476004|ref|YP_002564525.1| - 0.00042 20.4 1.7 0.00068 19.7 0.0 2.3 3 0 0 3 3 2 1 Helix-turn-helix domain HTH_1 PF00126.27 gi|222476004|ref|YP_002564525.1| - 0.00075 19.4 0.6 0.0019 18.1 0.1 1.9 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family Fe_dep_repress PF01325.19 gi|222476004|ref|YP_002564525.1| - 0.0016 18.6 0.0 0.011 15.9 0.0 2.1 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 gi|222476004|ref|YP_002564525.1| - 0.0043 17.4 0.0 0.052 13.9 0.0 2.3 2 0 0 2 2 2 1 Transcriptional regulator GntR PF00392.21 gi|222476004|ref|YP_002564525.1| - 0.0044 16.6 0.1 0.017 14.8 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family TrmB PF01978.19 gi|222476004|ref|YP_002564525.1| - 0.0061 16.4 0.0 0.013 15.4 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|222476004|ref|YP_002564525.1| - 0.0077 15.8 0.0 0.015 14.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|222476004|ref|YP_002564525.1| - 0.01 15.8 0.1 0.034 14.1 0.0 1.8 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain RPA_C PF08784.11 gi|222476004|ref|YP_002564525.1| - 0.016 15.9 0.0 0.029 15.0 0.0 1.5 1 0 0 1 1 1 0 Replication protein A C terminal HTH_30 PF13556.6 gi|222476004|ref|YP_002564525.1| - 0.028 14.2 0.1 0.055 13.3 0.1 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain DUF2250 PF10007.9 gi|222476004|ref|YP_002564525.1| - 0.041 14.0 0.0 0.069 13.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_Tnp_ISL3 PF13542.6 gi|222476004|ref|YP_002564525.1| - 0.11 11.9 0.1 0.41 10.1 0.1 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 LPD11 PF18824.1 gi|222476004|ref|YP_002564525.1| - 0.41 10.8 1.9 18 5.5 0.4 2.4 1 1 1 2 2 2 0 Large polyvalent protein-associated domain 11 NTP_transf_5 PF14907.6 gi|222476005|ref|YP_002564526.1| - 5.1e-08 32.9 0.1 7e-08 32.4 0.1 1.2 1 0 0 1 1 1 1 Uncharacterised nucleotidyltransferase AbiEii PF08843.11 gi|222476005|ref|YP_002564526.1| - 0.00063 19.8 0.2 0.0068 16.4 0.0 2.1 2 0 0 2 2 2 1 Nucleotidyl transferase AbiEii toxin, Type IV TA system Propep_M14 PF02244.16 gi|222476005|ref|YP_002564526.1| - 0.009 16.4 0.0 0.031 14.7 0.0 1.9 2 0 0 2 2 2 1 Carboxypeptidase activation peptide GrpB PF04229.14 gi|222476005|ref|YP_002564526.1| - 0.036 14.3 0.0 0.074 13.3 0.0 1.5 1 0 0 1 1 1 0 GrpB protein TRAM PF01938.20 gi|222476006|ref|YP_002564527.1| - 1.4e-15 57.0 1.3 2.1e-15 56.5 1.3 1.3 1 0 0 1 1 1 1 TRAM domain PIN PF01850.21 gi|222476008|ref|YP_002564529.1| - 0.00019 21.9 0.0 0.00075 20.0 0.0 1.9 2 0 0 2 2 2 1 PIN domain HTH_28 PF13518.6 gi|222476009|ref|YP_002564530.1| - 0.077 13.1 0.0 0.31 11.2 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain Nup54 PF13874.6 gi|222476009|ref|YP_002564530.1| - 0.28 11.3 0.8 9.5 6.3 0.0 2.7 2 1 1 3 3 3 0 Nucleoporin complex subunit 54 DDE_Tnp_1 PF01609.21 gi|222476011|ref|YP_002564532.1| - 0.031 13.9 0.1 0.085 12.5 0.1 1.7 1 1 0 1 1 1 0 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|222476014|ref|YP_002564535.1| - 0.027 14.1 0.1 0.14 11.8 0.0 2.1 1 1 0 1 1 1 0 Transposase DDE domain MarR_2 PF12802.7 gi|222476016|ref|YP_002564537.1| - 2.4e-14 53.0 1.3 2e-07 30.8 0.5 2.7 2 0 0 2 2 2 2 MarR family TrmB PF01978.19 gi|222476016|ref|YP_002564537.1| - 4.8e-09 36.0 0.3 0.00034 20.4 0.0 2.7 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|222476016|ref|YP_002564537.1| - 9.8e-08 31.8 0.0 0.0048 16.8 0.1 2.5 2 0 0 2 2 2 2 MarR family HTH_24 PF13412.6 gi|222476016|ref|YP_002564537.1| - 1e-07 31.4 0.1 0.0065 16.0 0.0 2.5 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 gi|222476016|ref|YP_002564537.1| - 5.6e-07 29.8 0.0 0.057 13.8 0.0 2.6 2 0 0 2 2 2 2 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|222476016|ref|YP_002564537.1| - 1.6e-06 28.0 0.0 0.00094 19.1 0.0 2.5 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_27 PF13463.6 gi|222476016|ref|YP_002564537.1| - 3e-06 27.6 0.8 2.2e-05 24.9 0.3 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|222476016|ref|YP_002564537.1| - 1e-05 25.5 0.3 0.06 13.4 0.0 2.7 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_29 PF13551.6 gi|222476016|ref|YP_002564537.1| - 1.5e-05 24.9 0.2 0.057 13.5 0.0 2.7 2 0 0 2 2 2 2 Winged helix-turn helix HTH_IclR PF09339.10 gi|222476016|ref|YP_002564537.1| - 1.9e-05 24.4 0.2 0.14 12.0 0.0 2.9 3 0 0 3 3 2 2 IclR helix-turn-helix domain HTH_23 PF13384.6 gi|222476016|ref|YP_002564537.1| - 5e-05 23.0 0.9 0.013 15.2 0.0 3.2 3 0 0 3 3 3 1 Homeodomain-like domain HTH_28 PF13518.6 gi|222476016|ref|YP_002564537.1| - 0.00031 20.8 0.9 0.031 14.4 0.0 3.1 3 0 0 3 3 3 1 Helix-turn-helix domain GntR PF00392.21 gi|222476016|ref|YP_002564537.1| - 0.0014 18.2 0.0 2.7 7.7 0.0 2.6 2 0 0 2 2 2 2 Bacterial regulatory proteins, gntR family HTH_5 PF01022.20 gi|222476016|ref|YP_002564537.1| - 0.0018 18.1 0.0 1.9 8.4 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family DUF746 PF05344.11 gi|222476016|ref|YP_002564537.1| - 0.0019 18.0 0.0 0.0048 16.7 0.0 1.7 1 0 0 1 1 1 1 Domain of Unknown Function (DUF746) Penicillinase_R PF03965.16 gi|222476016|ref|YP_002564537.1| - 0.0021 18.4 0.0 2.1 8.7 0.0 2.5 1 1 0 2 2 2 2 Penicillinase repressor Crp PF00325.20 gi|222476016|ref|YP_002564537.1| - 0.0052 16.4 0.4 0.025 14.2 0.3 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, crp family HTH_38 PF13936.6 gi|222476016|ref|YP_002564537.1| - 0.007 16.1 1.5 2.9 7.7 0.0 3.2 3 0 0 3 3 3 1 Helix-turn-helix domain LZ_Tnp_IS481 PF13011.6 gi|222476016|ref|YP_002564537.1| - 0.028 14.9 0.0 0.068 13.7 0.0 1.6 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 HTH_41 PF14502.6 gi|222476016|ref|YP_002564537.1| - 0.057 13.1 0.0 0.25 11.1 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain RPA_C PF08784.11 gi|222476016|ref|YP_002564537.1| - 0.11 13.2 0.0 0.31 11.7 0.0 1.7 2 0 0 2 2 1 0 Replication protein A C terminal GerE PF00196.19 gi|222476016|ref|YP_002564537.1| - 0.14 11.7 0.0 19 4.9 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_11 PF08279.12 gi|222476016|ref|YP_002564537.1| - 0.15 12.0 0.0 12 5.9 0.0 2.6 2 0 0 2 2 2 0 HTH domain PadR PF03551.14 gi|222476017|ref|YP_002564538.1| - 1.5e-05 24.9 0.0 2.6e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF2513 PF10711.9 gi|222476017|ref|YP_002564538.1| - 2.5e-05 24.5 0.0 4.5e-05 23.7 0.0 1.5 1 1 0 1 1 1 1 Hypothetical protein (DUF2513) FUR PF01475.19 gi|222476017|ref|YP_002564538.1| - 2.8e-05 24.3 0.1 5.3e-05 23.4 0.0 1.5 2 0 0 2 2 2 1 Ferric uptake regulator family DUF86 PF01934.17 gi|222476017|ref|YP_002564538.1| - 0.0022 17.9 0.1 0.0079 16.0 0.0 1.7 1 1 1 2 2 2 1 Protein of unknown function DUF86 HTH_11 PF08279.12 gi|222476017|ref|YP_002564538.1| - 0.0022 17.9 0.0 0.0046 16.9 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|222476017|ref|YP_002564538.1| - 0.003 17.6 0.0 0.0059 16.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|222476017|ref|YP_002564538.1| - 0.0077 15.8 0.2 0.031 13.9 0.0 2.1 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding RuBisCO_small PF00101.20 gi|222476017|ref|YP_002564538.1| - 0.015 15.3 0.0 0.061 13.3 0.1 1.9 1 1 0 1 1 1 0 Ribulose bisphosphate carboxylase, small chain TrmB PF01978.19 gi|222476017|ref|YP_002564538.1| - 0.019 14.9 0.0 0.044 13.7 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|222476017|ref|YP_002564538.1| - 0.043 13.7 0.0 0.079 12.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|222476017|ref|YP_002564538.1| - 0.046 13.6 0.0 0.11 12.4 0.0 1.7 1 1 0 1 1 1 0 MarR family HxlR PF01638.17 gi|222476017|ref|YP_002564538.1| - 0.087 12.7 0.0 0.21 11.5 0.0 1.7 1 1 0 1 1 1 0 HxlR-like helix-turn-helix Stk19 PF10494.9 gi|222476017|ref|YP_002564538.1| - 0.1 12.3 0.0 0.12 12.1 0.0 1.1 1 0 0 1 1 1 0 Serine-threonine protein kinase 19 HTH_27 PF13463.6 gi|222476017|ref|YP_002564538.1| - 0.13 12.8 0.0 0.3 11.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain Mnd1 PF03962.15 gi|222476017|ref|YP_002564538.1| - 0.16 12.3 0.1 0.28 11.5 0.1 1.4 1 0 0 1 1 1 0 Mnd1 HTH domain HTH_36 PF13730.6 gi|222476017|ref|YP_002564538.1| - 0.17 11.9 0.0 0.29 11.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain SWIM PF04434.17 gi|222476019|ref|YP_002564540.1| - 0.008 15.8 0.6 0.021 14.5 0.6 1.7 1 1 0 1 1 1 1 SWIM zinc finger NTP_transf_2 PF01909.23 gi|222476021|ref|YP_002564542.1| - 5.3e-09 36.3 0.2 9.7e-09 35.4 0.2 1.6 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|222476021|ref|YP_002564542.1| - 6.9e-08 32.5 0.1 3.9e-07 30.1 0.1 2.1 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase HTH_11 PF08279.12 gi|222476021|ref|YP_002564542.1| - 9.5e-07 28.7 0.8 1.8e-06 27.8 0.0 1.8 2 0 0 2 2 2 1 HTH domain HTH_IclR PF09339.10 gi|222476021|ref|YP_002564542.1| - 0.021 14.6 0.0 0.047 13.5 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_29 PF13551.6 gi|222476021|ref|YP_002564542.1| - 0.023 14.7 0.0 0.049 13.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix HTH_23 PF13384.6 gi|222476021|ref|YP_002564542.1| - 0.025 14.4 0.0 0.057 13.2 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain MarR_2 PF12802.7 gi|222476021|ref|YP_002564542.1| - 0.057 13.3 0.0 0.19 11.7 0.1 1.8 2 0 0 2 2 2 0 MarR family GntR PF00392.21 gi|222476021|ref|YP_002564542.1| - 0.063 12.9 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Adenyl_cycl_N PF12633.7 gi|222476021|ref|YP_002564542.1| - 0.064 13.1 0.0 0.088 12.7 0.0 1.2 1 0 0 1 1 1 0 Adenylate cyclase NT domain HTH_24 PF13412.6 gi|222476021|ref|YP_002564542.1| - 0.074 12.6 0.0 0.27 10.8 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding DUF294 PF03445.13 gi|222476021|ref|YP_002564542.1| - 0.18 11.6 0.1 0.3 10.9 0.1 1.4 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 TrmB PF01978.19 gi|222476021|ref|YP_002564542.1| - 0.19 11.6 0.0 0.79 9.6 0.0 1.9 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB AbiEi_1 PF09407.10 gi|222476022|ref|YP_002564543.1| - 4e-11 43.4 0.0 1.8e-10 41.3 0.0 1.8 2 0 0 2 2 2 1 AbiEi antitoxin C-terminal domain AbiEi_4 PF13338.6 gi|222476022|ref|YP_002564543.1| - 5.8e-09 36.0 0.1 1.7e-08 34.5 0.1 1.9 2 0 0 2 2 2 1 Transcriptional regulator, AbiEi antitoxin MarR_2 PF12802.7 gi|222476022|ref|YP_002564543.1| - 0.0011 18.7 0.1 0.0024 17.7 0.1 1.5 1 0 0 1 1 1 1 MarR family AbiEi_3_N PF17194.4 gi|222476022|ref|YP_002564543.1| - 0.017 15.1 0.0 0.039 14.0 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin N-terminal domain MTHFR_C PF12225.8 gi|222476022|ref|YP_002564543.1| - 0.084 12.5 0.1 0.14 11.8 0.1 1.3 1 0 0 1 1 1 0 Methylene-tetrahydrofolate reductase C terminal AlphaC_C PF17480.2 gi|222476022|ref|YP_002564543.1| - 0.14 12.2 0.0 25 5.0 0.0 2.2 2 0 0 2 2 2 0 AlphaC C-terminal Peptidase_M78 PF06114.13 gi|222476023|ref|YP_002564544.1| - 0.0025 17.7 0.0 0.0043 17.0 0.0 1.4 1 0 0 1 1 1 1 IrrE N-terminal-like domain SprT-like PF10263.9 gi|222476023|ref|YP_002564544.1| - 0.048 13.5 0.0 0.16 11.9 0.0 1.8 2 0 0 2 2 2 0 SprT-like family Rrf2 PF02082.20 gi|222476027|ref|YP_002564548.1| - 0.0007 19.9 0.0 0.12 12.8 0.0 2.9 2 1 1 3 3 3 1 Transcriptional regulator HTH_IclR PF09339.10 gi|222476027|ref|YP_002564548.1| - 0.016 15.0 0.0 0.031 14.1 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_28 PF13518.6 gi|222476027|ref|YP_002564548.1| - 0.026 14.6 0.4 0.054 13.6 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain TrmB PF01978.19 gi|222476027|ref|YP_002564548.1| - 0.076 12.9 0.1 0.13 12.1 0.1 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|222476027|ref|YP_002564548.1| - 0.095 12.6 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 MarR family Phage_NinH PF06322.11 gi|222476027|ref|YP_002564548.1| - 0.11 12.4 0.0 0.21 11.5 0.0 1.5 1 0 0 1 1 1 0 Phage NinH protein Fe_dep_repress PF01325.19 gi|222476027|ref|YP_002564548.1| - 0.13 12.5 0.2 0.34 11.1 0.0 1.8 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_38 PF13936.6 gi|222476027|ref|YP_002564548.1| - 0.16 11.7 0.1 0.27 11.0 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain TSC22 PF01166.18 gi|222476028|ref|YP_002564549.1| - 0.01 16.1 0.0 0.017 15.4 0.0 1.3 1 0 0 1 1 1 0 TSC-22/dip/bun family AraC_binding_2 PF14525.6 gi|222476029|ref|YP_002564550.1| - 0.1 12.3 0.1 0.21 11.3 0.1 1.4 1 1 0 1 1 1 0 AraC-binding-like domain Mrr_cat PF04471.12 gi|222476030|ref|YP_002564551.1| - 3.3e-28 98.0 0.0 5.9e-28 97.2 0.0 1.4 1 0 0 1 1 1 1 Restriction endonuclease DZR PF12773.7 gi|222476030|ref|YP_002564551.1| - 0.0055 16.7 0.4 0.0055 16.7 0.4 1.8 2 0 0 2 2 2 1 Double zinc ribbon Mrr_cat_2 PF13156.6 gi|222476030|ref|YP_002564551.1| - 0.016 15.1 0.0 0.033 14.1 0.0 1.4 1 0 0 1 1 1 0 Restriction endonuclease Siva PF05458.12 gi|222476030|ref|YP_002564551.1| - 0.034 13.8 1.6 0.055 13.1 1.6 1.3 1 0 0 1 1 1 0 Cd27 binding protein (Siva) zf-ribbon_3 PF13248.6 gi|222476030|ref|YP_002564551.1| - 0.039 13.4 2.5 0.1 12.0 2.5 1.7 1 0 0 1 1 1 0 zinc-ribbon domain DUF3797 PF12677.7 gi|222476030|ref|YP_002564551.1| - 0.05 13.5 0.3 0.16 11.9 0.3 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF3797) zinc_ribbon_15 PF17032.5 gi|222476030|ref|YP_002564551.1| - 0.054 14.3 0.5 0.054 14.3 0.5 1.9 2 0 0 2 2 2 0 zinc-ribbon family DUF865 PF05906.11 gi|222476030|ref|YP_002564551.1| - 0.13 12.1 0.1 0.38 10.6 0.1 1.8 1 0 0 1 1 1 0 Herpesvirus-7 repeat of unknown function (DUF865) zinc_ribbon_2 PF13240.6 gi|222476030|ref|YP_002564551.1| - 0.37 10.6 5.5 0.11 12.2 2.3 1.9 2 0 0 2 2 2 0 zinc-ribbon domain NOB1_Zn_bind PF08772.11 gi|222476030|ref|YP_002564551.1| - 0.45 10.7 2.6 1.2 9.4 2.6 1.6 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Metallophos PF00149.28 gi|222476032|ref|YP_002564553.1| - 6.8e-15 56.1 0.7 1.2e-14 55.3 0.7 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|222476032|ref|YP_002564553.1| - 3.7e-13 50.0 0.3 6.3e-13 49.3 0.3 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain zinc_ribbon_2 PF13240.6 gi|222476033|ref|YP_002564554.1| - 0.0088 15.7 1.7 3.2 7.6 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain DUF2318 PF10080.9 gi|222476033|ref|YP_002564554.1| - 0.012 15.7 0.1 0.016 15.3 0.1 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) DZR PF12773.7 gi|222476033|ref|YP_002564554.1| - 0.015 15.3 1.0 0.024 14.7 1.0 1.3 1 0 0 1 1 1 0 Double zinc ribbon Nudix_N_2 PF14803.6 gi|222476033|ref|YP_002564554.1| - 0.033 14.1 2.4 6.2 6.8 0.1 2.7 3 0 0 3 3 3 0 Nudix N-terminal GFA PF04828.14 gi|222476033|ref|YP_002564554.1| - 0.052 13.9 1.2 1.2 9.5 0.1 2.2 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme RPA_interact_C PF14768.6 gi|222476033|ref|YP_002564554.1| - 0.056 14.0 0.2 0.072 13.7 0.2 1.2 1 0 0 1 1 1 0 Replication protein A interacting C-terminal DpnI PF06044.12 gi|222476033|ref|YP_002564554.1| - 0.13 11.8 0.5 0.19 11.4 0.5 1.2 1 0 0 1 1 1 0 Dam-replacing family DNA_ligase_ZBD PF03119.16 gi|222476033|ref|YP_002564554.1| - 0.55 10.3 3.2 1.5 8.9 0.3 2.4 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain RNA_POL_M_15KD PF02150.16 gi|222476034|ref|YP_002564555.1| - 0.01 15.7 0.1 0.01 15.7 0.1 2.1 2 0 0 2 2 2 1 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1 PF03811.13 gi|222476034|ref|YP_002564555.1| - 0.016 14.9 0.1 0.032 14.0 0.1 1.5 1 0 0 1 1 1 0 InsA N-terminal domain Lar_restr_allev PF14354.6 gi|222476034|ref|YP_002564555.1| - 0.031 14.6 0.5 0.085 13.2 0.5 1.7 2 0 0 2 2 2 0 Restriction alleviation protein Lar OrfB_Zn_ribbon PF07282.11 gi|222476034|ref|YP_002564555.1| - 0.1 12.5 1.0 0.26 11.2 0.9 1.7 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Elf1 PF05129.13 gi|222476034|ref|YP_002564555.1| - 0.11 12.6 0.1 0.18 11.8 0.1 1.4 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like Rubredoxin_2 PF18073.1 gi|222476034|ref|YP_002564555.1| - 0.14 11.9 0.4 0.14 11.9 0.4 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain Zn-ribbon_8 PF09723.10 gi|222476034|ref|YP_002564555.1| - 0.28 11.3 2.5 14 5.9 0.2 2.3 2 0 0 2 2 2 0 Zinc ribbon domain NIR_SIR_ferr PF03460.17 gi|222476038|ref|YP_002564559.1| - 0.061 13.2 0.0 2 8.3 0.0 2.2 2 0 0 2 2 2 0 Nitrite/Sulfite reductase ferredoxin-like half domain Spt4 PF06093.13 gi|222476040|ref|YP_002564561.1| - 0.0011 19.0 0.8 0.0047 17.0 0.1 2.2 2 0 0 2 2 2 1 Spt4/RpoE2 zinc finger HypA PF01155.19 gi|222476040|ref|YP_002564561.1| - 0.0017 18.4 3.7 0.079 13.0 0.4 2.2 2 0 0 2 2 2 2 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|222476040|ref|YP_002564561.1| - 0.025 14.0 3.1 0.025 14.0 3.1 2.6 3 0 0 3 3 3 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.16 gi|222476040|ref|YP_002564561.1| - 0.025 14.4 7.9 0.6 10.0 0.2 4.0 4 0 0 4 4 4 0 RNA polymerases M/15 Kd subunit zinc_ribbon_2 PF13240.6 gi|222476040|ref|YP_002564561.1| - 0.026 14.2 2.6 0.026 14.2 2.6 3.0 3 0 0 3 3 3 0 zinc-ribbon domain zf-BED PF02892.15 gi|222476040|ref|YP_002564561.1| - 0.11 12.5 2.4 0.7 10.0 0.2 2.8 3 0 0 3 3 3 0 BED zinc finger zinc_ribbon_15 PF17032.5 gi|222476040|ref|YP_002564561.1| - 0.18 12.6 10.4 0.63 10.8 1.8 2.8 2 1 1 3 3 3 0 zinc-ribbon family Zf_RING PF16744.5 gi|222476040|ref|YP_002564561.1| - 0.44 10.7 3.3 26 5.0 0.1 3.4 3 0 0 3 3 3 0 KIAA1045 RING finger DZR PF12773.7 gi|222476040|ref|YP_002564561.1| - 0.48 10.5 10.3 0.77 9.8 2.5 2.7 2 1 0 2 2 2 0 Double zinc ribbon HalOD1 PF18545.1 gi|222476041|ref|YP_002564562.1| - 1.6e-22 79.5 0.2 4e-22 78.3 0.1 1.7 2 0 0 2 2 2 1 Halobacterial output domain 1 DUF835 PF05763.12 gi|222476041|ref|YP_002564562.1| - 0.0022 17.7 0.0 0.0037 17.0 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF835) PadR PF03551.14 gi|222476042|ref|YP_002564563.1| - 1.9e-09 37.3 1.3 6.3e-09 35.7 1.3 1.7 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_5 PF01022.20 gi|222476042|ref|YP_002564563.1| - 1.8e-07 30.9 0.0 2.2e-07 30.6 0.0 1.1 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|222476042|ref|YP_002564563.1| - 4.6e-06 26.6 0.1 6.9e-06 26.0 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.6 gi|222476042|ref|YP_002564563.1| - 2.2e-05 24.5 0.0 2.6e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|222476042|ref|YP_002564563.1| - 2.7e-05 23.9 0.0 3.5e-05 23.6 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|222476042|ref|YP_002564563.1| - 3e-05 23.8 0.0 4e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|222476042|ref|YP_002564563.1| - 4.9e-05 22.8 0.1 0.0052 16.3 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_45 PF14947.6 gi|222476042|ref|YP_002564563.1| - 0.00017 21.5 0.0 0.0002 21.3 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_11 PF08279.12 gi|222476042|ref|YP_002564563.1| - 0.00021 21.2 0.0 0.00028 20.8 0.0 1.3 1 1 0 1 1 1 1 HTH domain DUF1495 PF07381.11 gi|222476042|ref|YP_002564563.1| - 0.0017 18.1 0.1 0.002 17.9 0.1 1.4 1 1 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) DUF4364 PF14277.6 gi|222476042|ref|YP_002564563.1| - 0.002 17.9 0.0 0.0023 17.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) HxlR PF01638.17 gi|222476042|ref|YP_002564563.1| - 0.013 15.3 0.0 0.015 15.1 0.0 1.1 1 0 0 1 1 1 0 HxlR-like helix-turn-helix DUF505 PF04458.12 gi|222476042|ref|YP_002564563.1| - 0.03 12.7 0.1 0.03 12.7 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) FUR PF01475.19 gi|222476042|ref|YP_002564563.1| - 0.033 14.3 0.0 0.037 14.2 0.0 1.2 1 1 0 1 1 1 0 Ferric uptake regulator family Replic_Relax PF13814.6 gi|222476042|ref|YP_002564563.1| - 0.04 14.0 0.1 0.04 14.0 0.1 1.1 1 0 0 1 1 1 0 Replication-relaxation Rrf2 PF02082.20 gi|222476042|ref|YP_002564563.1| - 0.065 13.6 0.0 0.075 13.4 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator MarR PF01047.22 gi|222476042|ref|YP_002564563.1| - 0.071 13.1 0.0 0.1 12.5 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_40 PF14493.6 gi|222476042|ref|YP_002564563.1| - 0.094 13.2 0.0 0.1 13.0 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain TFIIB PF00382.19 gi|222476043|ref|YP_002564564.1| - 1.3e-27 95.6 0.7 1.8e-12 47.1 0.1 2.4 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|222476043|ref|YP_002564564.1| - 7.1e-12 44.6 4.3 1.4e-11 43.7 4.3 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding RB_B PF01857.20 gi|222476043|ref|YP_002564564.1| - 0.0029 17.6 0.0 0.0056 16.7 0.0 1.4 1 0 0 1 1 1 1 Retinoblastoma-associated protein B domain DZR PF12773.7 gi|222476043|ref|YP_002564564.1| - 0.027 14.5 1.4 0.057 13.5 1.4 1.4 1 0 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.11 gi|222476043|ref|YP_002564564.1| - 0.055 13.4 1.8 0.13 12.2 1.8 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zinc-ribbons_6 PF07191.12 gi|222476043|ref|YP_002564564.1| - 0.15 12.1 1.5 0.34 10.9 1.5 1.5 1 0 0 1 1 1 0 zinc-ribbons PHF5 PF03660.14 gi|222476043|ref|YP_002564564.1| - 0.19 11.9 1.8 0.43 10.8 1.8 1.5 1 0 0 1 1 1 0 PHF5-like protein UPF0547 PF10571.9 gi|222476043|ref|YP_002564564.1| - 0.2 11.8 1.7 0.43 10.7 1.7 1.6 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 HTH_20 PF12840.7 gi|222476045|ref|YP_002564566.1| - 2.8e-14 52.9 0.0 4.9e-14 52.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|222476045|ref|YP_002564566.1| - 4.9e-08 32.7 0.0 9.8e-08 31.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|222476045|ref|YP_002564566.1| - 1.6e-06 27.9 0.0 2.9e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|222476045|ref|YP_002564566.1| - 3.7e-06 26.4 0.0 7.2e-06 25.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|222476045|ref|YP_002564566.1| - 9.8e-06 25.4 0.0 1.7e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|222476045|ref|YP_002564566.1| - 4.2e-05 23.4 0.0 8e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB B-block_TFIIIC PF04182.12 gi|222476045|ref|YP_002564566.1| - 0.0023 18.1 0.0 0.0053 16.9 0.0 1.6 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_27 PF13463.6 gi|222476045|ref|YP_002564566.1| - 0.0082 16.6 0.0 0.017 15.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain Dimerisation2 PF16864.5 gi|222476045|ref|YP_002564566.1| - 0.014 15.3 0.0 0.022 14.7 0.0 1.3 1 0 0 1 1 1 0 Dimerisation domain CDC37_C PF08564.10 gi|222476045|ref|YP_002564566.1| - 0.016 15.3 0.1 0.075 13.2 0.1 2.0 1 1 0 1 1 1 0 Cdc37 C terminal domain Sigma70_r4_2 PF08281.12 gi|222476045|ref|YP_002564566.1| - 0.038 13.7 0.0 0.064 12.9 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 FaeA PF04703.12 gi|222476045|ref|YP_002564566.1| - 0.045 14.1 0.0 0.078 13.4 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein HTH_11 PF08279.12 gi|222476045|ref|YP_002564566.1| - 0.055 13.4 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 HTH domain Rrf2 PF02082.20 gi|222476045|ref|YP_002564566.1| - 0.06 13.7 0.0 0.26 11.7 0.0 2.0 1 1 1 2 2 2 0 Transcriptional regulator DUF2513 PF10711.9 gi|222476045|ref|YP_002564566.1| - 0.077 13.3 0.1 0.15 12.3 0.0 1.5 1 1 0 1 1 1 0 Hypothetical protein (DUF2513) DUF2250 PF10007.9 gi|222476045|ref|YP_002564566.1| - 0.088 12.9 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) SgrR_N PF12793.7 gi|222476045|ref|YP_002564566.1| - 0.099 12.9 0.0 0.16 12.2 0.0 1.5 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term ArsR PF09824.9 gi|222476045|ref|YP_002564566.1| - 0.11 12.1 0.0 0.31 10.6 0.0 1.7 2 0 0 2 2 2 0 ArsR transcriptional regulator HTH_Crp_2 PF13545.6 gi|222476045|ref|YP_002564566.1| - 0.14 12.1 0.0 0.28 11.2 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_7 PF02796.15 gi|222476045|ref|YP_002564566.1| - 0.17 12.0 0.0 0.33 11.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_10 PF04967.12 gi|222476045|ref|YP_002564566.1| - 0.17 11.7 0.0 0.35 10.7 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain DDE_Tnp_1 PF01609.21 gi|222476047|ref|YP_002564568.1| - 6.9e-23 81.4 0.0 1e-22 80.9 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.6 gi|222476047|ref|YP_002564568.1| - 0.0014 18.9 0.0 0.0024 18.1 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain COX8 PF02285.15 gi|222476048|ref|YP_002564569.1| - 0.0091 15.9 0.6 0.0098 15.7 0.6 1.2 1 0 0 1 1 1 1 Cytochrome oxidase c subunit VIII TMEM82 PF15816.5 gi|222476048|ref|YP_002564569.1| - 0.16 10.9 0.4 0.16 10.9 0.4 1.0 1 0 0 1 1 1 0 Transmembrane protein 82 HTH_5 PF01022.20 gi|222476050|ref|YP_002564571.1| - 3.5e-05 23.6 0.0 0.0001 22.1 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.6 gi|222476050|ref|YP_002564571.1| - 0.0028 17.6 0.0 0.0047 16.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.19 gi|222476050|ref|YP_002564571.1| - 0.0056 16.5 0.1 0.027 14.3 0.1 2.0 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|222476050|ref|YP_002564571.1| - 0.01 15.6 0.0 0.072 12.9 0.0 2.3 1 1 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|222476050|ref|YP_002564571.1| - 0.027 14.4 0.1 0.086 12.8 0.0 1.8 2 0 0 2 2 2 0 HTH domain HTH_20 PF12840.7 gi|222476050|ref|YP_002564571.1| - 0.039 14.0 0.0 0.083 13.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DUF1724 PF08350.10 gi|222476050|ref|YP_002564571.1| - 0.049 13.8 0.0 0.088 13.0 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1724) Phage_pRha PF09669.10 gi|222476050|ref|YP_002564571.1| - 0.1 13.2 0.0 0.21 12.2 0.0 1.6 1 0 0 1 1 1 0 Phage regulatory protein Rha (Phage_pRha) HTH_Crp_2 PF13545.6 gi|222476050|ref|YP_002564571.1| - 0.1 12.6 0.0 0.21 11.6 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|222476050|ref|YP_002564571.1| - 0.14 11.7 0.0 0.38 10.4 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HNH_repeat PF18780.1 gi|222476051|ref|YP_002564572.1| - 0.0007 19.3 2.1 0.001 18.8 0.4 2.0 2 0 0 2 2 2 1 Homing endonuclease repeat HNH_2 PF13391.6 gi|222476051|ref|YP_002564572.1| - 0.001 19.2 1.8 0.0029 17.7 1.7 1.9 1 1 0 1 1 1 1 HNH endonuclease HNH PF01844.23 gi|222476051|ref|YP_002564572.1| - 0.0024 18.0 1.9 0.0054 16.9 1.9 1.6 1 0 0 1 1 1 1 HNH endonuclease LexA_DNA_bind PF01726.16 gi|222476051|ref|YP_002564572.1| - 0.0081 15.9 0.0 1.9 8.4 0.0 2.6 2 0 0 2 2 2 2 LexA DNA binding domain WRKY PF03106.15 gi|222476051|ref|YP_002564572.1| - 0.035 14.3 0.8 0.035 14.3 0.8 1.9 2 0 0 2 2 2 0 WRKY DNA -binding domain Lipase3_N PF03893.16 gi|222476051|ref|YP_002564572.1| - 0.17 11.9 0.6 45 4.2 0.0 3.2 3 0 0 3 3 3 0 Lipase 3 N-terminal region tRNA_anti-codon PF01336.25 gi|222476052|ref|YP_002564573.1| - 0.00059 19.8 0.1 0.0012 18.8 0.1 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DUF3553 PF12073.8 gi|222476052|ref|YP_002564573.1| - 0.22 11.3 2.2 0.65 9.8 0.7 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3553) UPF0175 PF03683.13 gi|222476055|ref|YP_002564576.1| - 3.3e-11 42.7 0.2 3.9e-11 42.5 0.2 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) DUF772 PF05598.11 gi|222476058|ref|YP_002564579.1| - 0.047 13.7 0.0 0.079 13.0 0.0 1.4 1 0 0 1 1 1 0 Transposase domain (DUF772) DUF1118 PF06549.12 gi|222476059|ref|YP_002564580.1| - 0.52 10.7 7.4 2.1 8.7 3.6 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1118) ABC_tran PF00005.27 gi|222476060|ref|YP_002564581.1| - 7.3e-28 97.8 0.0 1.1e-27 97.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|222476060|ref|YP_002564581.1| - 9.9e-17 61.7 2.1 1.4e-13 51.3 0.7 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|222476060|ref|YP_002564581.1| - 0.01 16.3 0.1 0.023 15.2 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|222476060|ref|YP_002564581.1| - 0.015 15.6 0.3 0.11 12.7 0.2 2.2 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|222476060|ref|YP_002564581.1| - 0.021 14.2 0.0 3.4 7.0 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|222476060|ref|YP_002564581.1| - 0.027 14.2 0.1 0.054 13.2 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|222476060|ref|YP_002564581.1| - 0.032 13.9 0.0 0.28 10.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|222476060|ref|YP_002564581.1| - 0.05 14.0 0.2 0.48 10.9 0.2 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|222476060|ref|YP_002564581.1| - 0.052 13.3 0.1 0.1 12.4 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|222476060|ref|YP_002564581.1| - 0.054 13.9 0.0 0.085 13.2 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_14 PF13173.6 gi|222476060|ref|YP_002564581.1| - 0.074 13.1 0.1 9.5 6.3 0.1 2.3 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|222476060|ref|YP_002564581.1| - 0.08 12.5 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|222476060|ref|YP_002564581.1| - 0.14 11.8 0.0 6.3 6.4 0.0 2.1 1 1 0 2 2 2 0 AAA ATPase domain AAA_18 PF13238.6 gi|222476060|ref|YP_002564581.1| - 0.16 12.5 0.0 1.5 9.3 0.0 2.2 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|222476060|ref|YP_002564581.1| - 0.24 10.0 0.0 0.37 9.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain DUF2065 PF09838.9 gi|222476061|ref|YP_002564582.1| - 0.058 13.4 0.4 0.058 13.4 0.4 3.0 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2065) DUF4191 PF13829.6 gi|222476062|ref|YP_002564583.1| - 0.3 10.4 1.2 0.31 10.3 1.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) BatA PF07584.11 gi|222476062|ref|YP_002564583.1| - 9.3 6.7 10.5 1.6 9.2 1.7 2.0 1 1 1 2 2 2 0 Aerotolerance regulator N-terminal TAT_signal PF10518.9 gi|222476063|ref|YP_002564584.1| - 0.019 14.8 0.8 0.038 13.9 0.8 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence PEP_mutase PF13714.6 gi|222476063|ref|YP_002564584.1| - 0.09 12.2 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 Phosphoenolpyruvate phosphomutase Rubredoxin_2 PF18073.1 gi|222476063|ref|YP_002564584.1| - 6.3 6.6 7.7 3.7 7.4 0.9 2.9 3 0 0 3 3 3 0 Rubredoxin metal binding domain HTH_20 PF12840.7 gi|222476064|ref|YP_002564585.1| - 3.5e-06 27.0 1.0 7.4e-06 25.9 0.3 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.19 gi|222476064|ref|YP_002564585.1| - 1.8e-05 24.6 0.0 3.1e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.21 gi|222476064|ref|YP_002564585.1| - 0.00066 19.3 0.2 0.0023 17.6 0.1 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_5 PF01022.20 gi|222476064|ref|YP_002564585.1| - 0.0037 17.1 0.0 0.006 16.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|222476064|ref|YP_002564585.1| - 0.0049 16.8 0.1 0.011 15.6 0.0 1.7 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|222476064|ref|YP_002564585.1| - 0.005 16.7 0.1 0.0086 16.0 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.6 gi|222476064|ref|YP_002564585.1| - 0.011 15.5 0.0 0.022 14.6 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain Rrf2 PF02082.20 gi|222476064|ref|YP_002564585.1| - 0.016 15.5 0.0 0.76 10.2 0.0 2.2 2 0 0 2 2 2 0 Transcriptional regulator RP-C PF03428.13 gi|222476064|ref|YP_002564585.1| - 0.019 14.6 0.0 0.034 13.8 0.0 1.3 1 0 0 1 1 1 0 Replication protein C N-terminal domain HTH_11 PF08279.12 gi|222476064|ref|YP_002564585.1| - 0.023 14.7 0.1 0.037 14.0 0.1 1.3 1 0 0 1 1 1 0 HTH domain Trp_repressor PF01371.19 gi|222476064|ref|YP_002564585.1| - 0.037 14.2 0.0 0.47 10.6 0.0 2.1 2 0 0 2 2 2 0 Trp repressor protein HTH_IclR PF09339.10 gi|222476064|ref|YP_002564585.1| - 0.048 13.5 0.2 0.12 12.2 0.2 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_38 PF13936.6 gi|222476064|ref|YP_002564585.1| - 0.16 11.8 0.1 0.23 11.3 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HalOD1 PF18545.1 gi|222476066|ref|YP_002564587.1| - 1.9e-07 31.2 1.2 2.6e-07 30.8 1.2 1.3 1 0 0 1 1 1 1 Halobacterial output domain 1 DUF4318 PF14201.6 gi|222476066|ref|YP_002564587.1| - 0.11 13.0 0.0 0.17 12.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4318) Mrr_N PF14338.6 gi|222476067|ref|YP_002564588.1| - 0.00049 20.2 0.0 0.00063 19.8 0.0 1.3 1 0 0 1 1 1 1 Mrr N-terminal domain DUF2250 PF10007.9 gi|222476067|ref|YP_002564588.1| - 0.00078 19.5 0.0 0.0013 18.8 0.0 1.4 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_42 PF06224.12 gi|222476067|ref|YP_002564588.1| - 0.03 13.9 0.0 0.031 13.8 0.0 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_45 PF14947.6 gi|222476067|ref|YP_002564588.1| - 0.1 12.6 0.1 0.11 12.5 0.1 1.3 1 1 0 1 1 1 0 Winged helix-turn-helix YjhX_toxin PF09857.9 gi|222476067|ref|YP_002564588.1| - 0.13 12.3 0.0 4.8 7.2 0.0 2.1 1 1 0 1 1 1 0 Putative toxin of bacterial toxin-antitoxin pair DUF4423 PF14394.6 gi|222476067|ref|YP_002564588.1| - 0.15 11.8 0.0 0.17 11.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) PIN_9 PF18477.1 gi|222476068|ref|YP_002564589.1| - 0.0078 16.5 0.0 0.012 15.9 0.0 1.3 1 0 0 1 1 1 1 PIN like domain RHH_1 PF01402.21 gi|222476069|ref|YP_002564590.1| - 0.17 11.9 1.1 0.27 11.2 0.0 1.9 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family TF_Zn_Ribbon PF08271.12 gi|222476071|ref|YP_002564592.1| - 0.027 14.0 0.7 0.027 14.0 0.7 2.0 2 0 0 2 2 2 0 TFIIB zinc-binding PHD PF00628.29 gi|222476071|ref|YP_002564592.1| - 1.2 9.1 7.0 2.5 8.1 4.1 2.5 2 1 0 2 2 2 0 PHD-finger ATG16 PF08614.11 gi|222476074|ref|YP_002564595.1| - 0.00014 22.1 1.5 0.00014 22.1 1.5 1.9 2 0 0 2 2 2 1 Autophagy protein 16 (ATG16) HAP1_N PF04849.13 gi|222476074|ref|YP_002564595.1| - 0.0042 16.3 3.6 0.007 15.6 3.6 1.3 1 0 0 1 1 1 1 HAP1 N-terminal conserved region SlyX PF04102.12 gi|222476074|ref|YP_002564595.1| - 0.01 16.5 1.5 0.01 16.5 1.5 2.6 3 0 0 3 3 3 1 SlyX DUF1192 PF06698.11 gi|222476074|ref|YP_002564595.1| - 0.012 15.6 3.1 0.032 14.3 3.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1192) DivIC PF04977.15 gi|222476074|ref|YP_002564595.1| - 0.02 14.7 1.9 0.055 13.3 1.9 1.7 1 0 0 1 1 1 0 Septum formation initiator DUF1664 PF07889.12 gi|222476074|ref|YP_002564595.1| - 0.073 13.1 0.8 0.15 12.1 0.3 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) Atg14 PF10186.9 gi|222476074|ref|YP_002564595.1| - 0.074 12.1 0.6 0.12 11.5 0.6 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF2205 PF10224.9 gi|222476074|ref|YP_002564595.1| - 0.076 13.0 0.5 0.14 12.2 0.5 1.4 1 0 0 1 1 1 0 Short coiled-coil protein Prefoldin PF02996.17 gi|222476074|ref|YP_002564595.1| - 0.12 12.3 3.3 0.11 12.5 1.3 1.9 2 0 0 2 2 2 0 Prefoldin subunit YabA PF06156.13 gi|222476074|ref|YP_002564595.1| - 0.14 12.8 0.6 0.34 11.6 0.6 1.6 1 0 0 1 1 1 0 Initiation control protein YabA DUF16 PF01519.16 gi|222476074|ref|YP_002564595.1| - 0.16 12.5 1.3 0.23 12.0 0.2 1.7 2 0 0 2 2 1 0 Protein of unknown function DUF16 ZapB PF06005.12 gi|222476074|ref|YP_002564595.1| - 0.24 11.9 3.8 0.52 10.8 3.8 1.6 1 0 0 1 1 1 0 Cell division protein ZapB HSBP1 PF06825.12 gi|222476074|ref|YP_002564595.1| - 0.26 11.2 3.4 7.4 6.5 0.3 2.6 2 1 1 3 3 2 0 Heat shock factor binding protein 1 DASH_Spc19 PF08287.11 gi|222476074|ref|YP_002564595.1| - 3.9 7.3 8.7 2.6 7.9 4.1 2.1 2 0 0 2 2 2 0 Spc19 DUF4407 PF14362.6 gi|222476074|ref|YP_002564595.1| - 4.4 6.6 5.9 0.34 10.2 0.9 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) TrwB_AAD_bind PF10412.9 gi|222476075|ref|YP_002564596.1| - 5.5e-09 35.4 0.0 5.2e-05 22.3 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain TraG-D_C PF12696.7 gi|222476075|ref|YP_002564596.1| - 2.1e-06 27.7 0.0 4.8e-06 26.6 0.0 1.6 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG T4SS-DNA_transf PF02534.14 gi|222476075|ref|YP_002564596.1| - 3.1e-05 23.0 0.0 0.0011 17.9 0.1 2.1 2 0 0 2 2 2 1 Type IV secretory system Conjugative DNA transfer FtsK_SpoIIIE PF01580.18 gi|222476075|ref|YP_002564596.1| - 0.012 15.0 0.0 0.59 9.4 0.0 2.5 2 0 0 2 2 2 0 FtsK/SpoIIIE family HHH_6 PF14579.6 gi|222476075|ref|YP_002564596.1| - 0.021 15.1 0.0 0.049 13.9 0.0 1.6 1 0 0 1 1 1 0 Helix-hairpin-helix motif DUF87 PF01935.17 gi|222476075|ref|YP_002564596.1| - 0.034 14.2 0.1 0.17 12.0 0.0 2.3 3 1 0 3 3 3 0 Helicase HerA, central domain NACHT PF05729.12 gi|222476075|ref|YP_002564596.1| - 0.059 13.3 0.0 0.24 11.3 0.0 2.0 2 0 0 2 2 2 0 NACHT domain Pox_D5 PF03288.16 gi|222476075|ref|YP_002564596.1| - 0.075 13.5 0.0 0.15 12.5 0.0 1.5 1 0 0 1 1 1 0 Poxvirus D5 protein-like AAA_22 PF13401.6 gi|222476075|ref|YP_002564596.1| - 0.11 12.8 0.1 4.2 7.6 0.0 2.8 2 0 0 2 2 2 0 AAA domain TAT_ubiq PF07706.12 gi|222476076|ref|YP_002564597.1| - 0.12 12.6 0.0 0.23 11.7 0.0 1.4 1 0 0 1 1 1 0 Aminotransferase ubiquitination site Rsa3 PF14615.6 gi|222476076|ref|YP_002564597.1| - 0.16 11.6 0.0 0.33 10.5 0.0 1.6 1 0 0 1 1 1 0 Ribosome-assembly protein 3 TraG-D_C PF12696.7 gi|222476077|ref|YP_002564598.1| - 0.00018 21.5 0.0 0.00038 20.4 0.0 1.5 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG AAA_22 PF13401.6 gi|222476077|ref|YP_002564598.1| - 0.0024 18.1 0.3 0.15 12.4 0.2 2.8 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|222476077|ref|YP_002564598.1| - 0.0045 17.4 1.0 0.25 11.7 0.2 3.3 3 0 0 3 3 3 1 AAA ATPase domain Zot PF05707.12 gi|222476077|ref|YP_002564598.1| - 0.0087 15.7 0.1 0.099 12.3 0.1 2.2 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) OpcA_G6PD_assem PF10128.9 gi|222476077|ref|YP_002564598.1| - 0.022 14.3 0.3 0.086 12.3 0.0 2.0 2 0 0 2 2 2 0 Glucose-6-phosphate dehydrogenase subunit DUF3487 PF11990.8 gi|222476077|ref|YP_002564598.1| - 0.055 13.4 0.4 0.11 12.4 0.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3487) DUF883 PF05957.13 gi|222476078|ref|YP_002564599.1| - 0.16 12.6 3.9 0.43 11.2 3.9 1.6 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF883) FlgD_ig PF13860.6 gi|222476079|ref|YP_002564600.1| - 0.0011 18.8 0.3 0.0023 17.7 0.3 1.6 1 0 0 1 1 1 1 FlgD Ig-like domain DUF3558 PF12079.8 gi|222476079|ref|YP_002564600.1| - 0.98 9.4 7.8 0.56 10.2 2.7 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3558) DUF4624 PF15417.6 gi|222476080|ref|YP_002564601.1| - 0.24 11.2 1.9 0.36 10.7 0.2 2.1 2 1 1 3 3 3 0 Domain of unknown function (DUF4624) TrbC PF04956.13 gi|222476081|ref|YP_002564602.1| - 0.00074 19.7 1.7 0.00094 19.4 1.7 1.1 1 0 0 1 1 1 1 TrbC/VIRB2 family DUF2304 PF10066.9 gi|222476081|ref|YP_002564602.1| - 0.2 11.9 0.0 1.9 8.8 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2304) SATase_N PF06426.14 gi|222476082|ref|YP_002564603.1| - 0.03 14.7 0.1 0.031 14.7 0.1 1.1 1 0 0 1 1 1 0 Serine acetyltransferase, N-terminal C1_1 PF00130.22 gi|222476083|ref|YP_002564604.1| - 0.0022 17.9 2.9 0.0022 17.9 2.9 2.1 1 1 1 2 2 2 1 Phorbol esters/diacylglycerol binding domain (C1 domain) Ribosomal_L40e PF01020.17 gi|222476083|ref|YP_002564604.1| - 0.0024 17.7 6.1 0.004 17.0 6.1 1.4 1 0 0 1 1 1 1 Ribosomal L40e family zf-C3HC4_3 PF13920.6 gi|222476083|ref|YP_002564604.1| - 0.0066 16.3 6.8 0.0066 16.3 6.8 1.6 1 1 1 2 2 2 1 Zinc finger, C3HC4 type (RING finger) zf-HIT PF04438.16 gi|222476083|ref|YP_002564604.1| - 0.007 16.2 11.9 2.5 8.1 8.0 3.1 2 1 0 2 2 2 2 HIT zinc finger zf-CRD PF17979.1 gi|222476083|ref|YP_002564604.1| - 0.022 14.9 5.2 0.026 14.6 5.2 1.1 1 0 0 1 1 1 0 Cysteine rich domain with multizinc binding regions zinc-ribbons_6 PF07191.12 gi|222476083|ref|YP_002564604.1| - 0.25 11.4 7.8 1.3 9.1 1.9 2.2 1 1 1 2 2 2 0 zinc-ribbons Zn-ribbon_8 PF09723.10 gi|222476083|ref|YP_002564604.1| - 0.61 10.3 15.9 14 5.9 10.8 3.2 2 1 0 2 2 2 0 Zinc ribbon domain zf-ACC PF17848.1 gi|222476083|ref|YP_002564604.1| - 0.77 9.9 0.1 0.77 9.9 0.1 3.9 3 1 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain zf_C2H2_10 PF18414.1 gi|222476083|ref|YP_002564604.1| - 1.2 8.7 8.4 1.7 8.3 0.8 2.6 2 1 0 2 2 2 0 C2H2 type zinc-finger HypA PF01155.19 gi|222476083|ref|YP_002564604.1| - 1.4 8.9 8.4 10 6.2 5.9 2.0 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf_UBZ PF18439.1 gi|222476083|ref|YP_002564604.1| - 1.9 8.1 13.5 7 6.3 0.3 3.8 3 1 1 4 4 4 0 Ubiquitin-Binding Zinc Finger FYVE PF01363.21 gi|222476083|ref|YP_002564604.1| - 5.8 7.1 14.4 1.3e+02 2.8 14.5 2.3 1 1 0 1 1 1 0 FYVE zinc finger zf-C2H2_4 PF13894.6 gi|222476083|ref|YP_002564604.1| - 6.2 7.9 14.7 2.6 9.1 0.5 3.7 2 1 1 3 3 3 0 C2H2-type zinc finger TMEM210 PF15195.6 gi|222476084|ref|YP_002564605.1| - 0.11 12.9 0.0 0.14 12.6 0.0 1.2 1 0 0 1 1 1 0 TMEM210 family PRiA4_ORF3 PF07929.11 gi|222476085|ref|YP_002564606.1| - 8.9e-18 64.6 0.0 1.3e-17 64.1 0.0 1.2 1 0 0 1 1 1 1 Plasmid pRiA4b ORF-3-like protein ResIII PF04851.15 gi|222476086|ref|YP_002564607.1| - 3.5e-22 79.2 0.0 1.6e-21 77.1 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit ERCC3_RAD25_C PF16203.5 gi|222476086|ref|YP_002564607.1| - 4.2e-22 78.6 0.3 6.4e-22 78.0 0.3 1.2 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase Helicase_C PF00271.31 gi|222476086|ref|YP_002564607.1| - 2e-17 63.5 0.1 2e-17 63.5 0.1 1.8 2 0 0 2 2 2 1 Helicase conserved C-terminal domain XPB_DRD PF18458.1 gi|222476086|ref|YP_002564607.1| - 3.3e-13 49.3 1.3 1.5e-12 47.2 1.3 2.2 1 0 0 1 1 1 1 Xeroderma pigmentosum group B helicase damage recognition domain DEAD PF00270.29 gi|222476086|ref|YP_002564607.1| - 4.4e-08 33.1 0.0 1e-07 31.9 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase IstB_IS21 PF01695.17 gi|222476086|ref|YP_002564607.1| - 0.029 14.1 0.0 0.52 10.0 0.0 2.6 2 0 0 2 2 2 0 IstB-like ATP binding protein Helicase_C_2 PF13307.6 gi|222476086|ref|YP_002564607.1| - 0.063 13.4 1.0 2.8 8.1 0.0 3.1 1 1 2 3 3 3 0 Helicase C-terminal domain DUF790 PF05626.11 gi|222476087|ref|YP_002564608.1| - 4.2e-138 460.3 0.0 4.8e-138 460.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF790) DUF3268 PF11672.8 gi|222476087|ref|YP_002564608.1| - 0.18 12.2 0.0 0.33 11.3 0.0 1.5 1 0 0 1 1 1 0 zinc-finger-containing domain Helicase_C PF00271.31 gi|222476088|ref|YP_002564609.1| - 4.4e-24 85.0 0.0 1.2e-23 83.5 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain SNF2_N PF00176.23 gi|222476088|ref|YP_002564609.1| - 1.4e-17 63.5 0.0 1e-15 57.3 0.0 2.3 1 1 0 1 1 1 1 SNF2 family N-terminal domain ResIII PF04851.15 gi|222476088|ref|YP_002564609.1| - 7.9e-14 52.0 0.0 3.1e-13 50.1 0.0 2.1 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|222476088|ref|YP_002564609.1| - 6.5e-06 26.0 0.0 1.8e-05 24.6 0.0 1.8 1 0 0 1 1 1 1 DEAD/DEAH box helicase RapA_C PF12137.8 gi|222476088|ref|YP_002564609.1| - 7.4e-05 21.9 0.1 7.4e-05 21.9 0.1 2.8 2 1 0 2 2 2 1 RNA polymerase recycling family C-terminal Helicase_C_4 PF13871.6 gi|222476088|ref|YP_002564609.1| - 0.00068 19.4 0.1 0.05 13.3 0.0 2.5 2 0 0 2 2 2 1 C-terminal domain on Strawberry notch homologue DUF2075 PF09848.9 gi|222476088|ref|YP_002564609.1| - 0.0082 15.4 0.5 0.062 12.5 0.1 2.6 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_34 PF13872.6 gi|222476088|ref|YP_002564609.1| - 0.017 14.1 0.4 0.13 11.2 0.4 2.1 1 1 0 1 1 1 0 P-loop containing NTP hydrolase pore-1 DUF4611 PF15387.6 gi|222476088|ref|YP_002564609.1| - 0.94 9.7 5.5 0.5 10.6 0.3 2.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4611) Herpes_UL25 PF01499.16 gi|222476088|ref|YP_002564609.1| - 1.5 7.2 5.6 2.8 6.4 5.6 1.3 1 0 0 1 1 1 0 Herpesvirus UL25 family PglZ PF08665.12 gi|222476089|ref|YP_002564610.1| - 1.6e-12 47.9 0.0 2.8e-12 47.1 0.0 1.4 1 0 0 1 1 1 1 PglZ domain MazE_antitoxin PF04014.18 gi|222476091|ref|YP_002564612.1| - 0.00031 20.6 0.2 0.00051 19.9 0.2 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|222476091|ref|YP_002564612.1| - 0.0026 18.1 0.0 0.0034 17.8 0.0 1.2 1 0 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin zf-HC2 PF13490.6 gi|222476091|ref|YP_002564612.1| - 0.073 13.3 0.2 0.13 12.5 0.2 1.5 1 0 0 1 1 1 0 Putative zinc-finger Inhibitor_I53 PF11714.8 gi|222476091|ref|YP_002564612.1| - 0.16 12.2 0.6 0.26 11.5 0.5 1.4 1 1 0 1 1 1 0 Thrombin inhibitor Madanin PIN PF01850.21 gi|222476092|ref|YP_002564613.1| - 3e-16 60.0 0.7 3.4e-16 59.9 0.7 1.0 1 0 0 1 1 1 1 PIN domain Bac_DnaA PF00308.18 gi|222476093|ref|YP_002564614.1| - 0.044 13.6 0.0 0.1 12.4 0.0 1.6 1 0 0 1 1 1 0 Bacterial dnaA protein AAA_22 PF13401.6 gi|222476093|ref|YP_002564614.1| - 0.15 12.4 0.0 1.1 9.5 0.0 2.5 2 0 0 2 2 2 0 AAA domain DUF1788 PF08747.11 gi|222476094|ref|YP_002564615.1| - 8.3e-12 45.2 0.0 1.2e-11 44.7 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1788) EIIA-man PF03610.16 gi|222476094|ref|YP_002564615.1| - 0.021 15.1 0.0 0.031 14.5 0.0 1.3 1 0 0 1 1 1 0 PTS system fructose IIA component Tudor_3 PF18115.1 gi|222476094|ref|YP_002564615.1| - 0.05 13.4 0.0 0.12 12.2 0.0 1.6 1 0 0 1 1 1 0 DNA repair protein Crb2 Tudor domain ABC_tran PF00005.27 gi|222476095|ref|YP_002564616.1| - 0.078 13.5 0.0 0.35 11.4 0.0 2.1 2 0 0 2 2 2 0 ABC transporter AAA_16 PF13191.6 gi|222476095|ref|YP_002564616.1| - 0.66 10.3 0.0 0.66 10.3 0.0 3.7 4 1 0 4 4 4 0 AAA ATPase domain DUF1819 PF08849.11 gi|222476096|ref|YP_002564617.1| - 4.8e-06 26.5 0.0 5.8e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Putative inner membrane protein (DUF1819) UvrD-helicase PF00580.21 gi|222476099|ref|YP_002564620.1| - 5.6e-51 173.9 0.2 2.1e-50 172.1 0.2 1.9 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 gi|222476099|ref|YP_002564620.1| - 1.7e-27 96.7 0.0 3.4e-17 62.9 0.0 2.2 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 gi|222476099|ref|YP_002564620.1| - 1.9e-26 93.2 0.0 1.4e-25 90.4 0.0 2.2 1 1 0 1 1 1 1 AAA domain UvrD_C_2 PF13538.6 gi|222476099|ref|YP_002564620.1| - 1.9e-09 37.2 0.2 0.00034 20.4 0.1 2.8 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 gi|222476099|ref|YP_002564620.1| - 1.8e-07 31.1 0.0 3.5e-06 26.9 0.0 2.4 2 0 0 2 2 2 1 AAA domain PDDEXK_1 PF12705.7 gi|222476099|ref|YP_002564620.1| - 1.6e-05 24.9 1.1 0.0001 22.3 0.1 2.5 2 1 0 2 2 2 1 PD-(D/E)XK nuclease superfamily AAA_11 PF13086.6 gi|222476099|ref|YP_002564620.1| - 0.00013 21.9 0.0 0.1 12.4 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_12 PF13087.6 gi|222476099|ref|YP_002564620.1| - 0.00078 19.1 0.0 0.087 12.4 0.0 2.7 2 1 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.18 gi|222476099|ref|YP_002564620.1| - 0.006 16.4 1.2 11 5.7 0.1 3.7 4 0 0 4 4 4 1 Viral (Superfamily 1) RNA helicase PhoH PF02562.16 gi|222476099|ref|YP_002564620.1| - 0.053 13.0 0.1 8.7 5.7 0.0 2.4 2 0 0 2 2 2 0 PhoH-like protein PDDEXK_1 PF12705.7 gi|222476100|ref|YP_002564621.1| - 1e-11 45.2 0.0 3.8e-11 43.4 0.0 2.0 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily SlyX PF04102.12 gi|222476101|ref|YP_002564622.1| - 0.024 15.2 1.0 4.8 7.9 0.0 2.4 2 1 0 2 2 2 0 SlyX TSNAXIP1_N PF15739.5 gi|222476101|ref|YP_002564622.1| - 0.14 12.5 0.6 10 6.5 0.0 2.1 2 0 0 2 2 2 0 Translin-associated factor X-interacting N-terminus DDE_Tnp_1 PF01609.21 gi|222476102|ref|YP_002564623.1| - 0.031 13.9 0.1 0.085 12.5 0.1 1.7 1 1 0 1 1 1 0 Transposase DDE domain Glyco_hyd_101C PF17451.2 gi|222476106|ref|YP_002564627.1| - 0.032 14.5 0.2 0.05 13.9 0.2 1.3 1 0 0 1 1 1 0 Glycosyl hydrolase 101 beta sandwich domain LIM_bind PF01803.16 gi|222476106|ref|YP_002564627.1| - 0.17 11.4 0.0 0.22 11.0 0.0 1.1 1 0 0 1 1 1 0 LIM-domain binding protein DDE_Tnp_1 PF01609.21 gi|222476109|ref|YP_002564630.1| - 0.031 13.9 0.1 0.085 12.5 0.1 1.7 1 1 0 1 1 1 0 Transposase DDE domain UPF0236 PF06782.11 gi|222476111|ref|YP_002564632.1| - 9.7e-06 24.5 0.0 0.00026 19.8 0.0 2.1 2 0 0 2 2 2 2 Uncharacterised protein family (UPF0236) Transposase_mut PF00872.18 gi|222476111|ref|YP_002564632.1| - 0.00037 19.4 0.2 1 8.1 0.0 2.9 2 2 0 2 2 2 2 Transposase, Mutator family DDE_Tnp_1 PF01609.21 gi|222476112|ref|YP_002564633.1| - 0.031 13.9 0.1 0.085 12.5 0.1 1.7 1 1 0 1 1 1 0 Transposase DDE domain CARDB PF07705.11 gi|222476113|ref|YP_002564634.1| - 9.9e-06 25.8 0.7 8.2e-05 22.8 0.6 2.3 2 0 0 2 2 2 1 CARDB DUF4232 PF14016.6 gi|222476113|ref|YP_002564634.1| - 0.0089 16.2 1.4 0.021 15.0 1.2 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF4232) TIG PF01833.24 gi|222476113|ref|YP_002564634.1| - 0.2 11.8 1.7 0.37 10.9 1.7 1.4 1 0 0 1 1 1 0 IPT/TIG domain Fn3-like PF14310.6 gi|222476113|ref|YP_002564634.1| - 0.27 11.4 4.1 0.42 10.8 0.0 3.1 4 0 0 4 4 4 0 Fibronectin type III-like domain fn3_5 PF06280.12 gi|222476113|ref|YP_002564634.1| - 0.42 11.3 7.0 0.48 11.1 4.1 2.2 1 1 1 2 2 2 0 Fn3-like domain DUF11 PF01345.18 gi|222476113|ref|YP_002564634.1| - 0.45 10.8 2.9 1.8 8.9 2.9 1.9 1 1 0 1 1 1 0 Domain of unknown function DUF11 Glyco_hydro_2 PF00703.21 gi|222476113|ref|YP_002564634.1| - 0.93 10.2 4.6 3.9 8.2 2.8 2.6 2 1 1 3 3 3 0 Glycosyl hydrolases family 2 Big_3_5 PF16640.5 gi|222476113|ref|YP_002564634.1| - 1.8 8.8 9.4 7.2 6.9 8.1 2.2 1 1 1 2 2 2 0 Bacterial Ig-like domain (group 3) AAA_22 PF13401.6 gi|222476115|ref|YP_002564636.1| - 2.7e-10 40.6 0.1 7.5e-09 36.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|222476115|ref|YP_002564636.1| - 4.6e-09 36.9 0.7 5.8e-08 33.3 0.1 2.5 2 2 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|222476115|ref|YP_002564636.1| - 1e-06 29.2 0.0 1.3e-05 25.7 0.0 2.7 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_assoc_2 PF16193.5 gi|222476115|ref|YP_002564636.1| - 4.3e-05 23.8 0.4 0.00012 22.3 0.1 1.9 2 0 0 2 2 2 1 AAA C-terminal domain Bac_DnaA PF00308.18 gi|222476115|ref|YP_002564636.1| - 0.00057 19.8 0.1 0.0036 17.2 0.1 2.2 1 1 0 1 1 1 1 Bacterial dnaA protein AAA_5 PF07728.14 gi|222476115|ref|YP_002564636.1| - 0.0029 17.6 0.0 0.012 15.7 0.0 2.0 2 2 1 3 3 3 1 AAA domain (dynein-related subfamily) TsaE PF02367.17 gi|222476115|ref|YP_002564636.1| - 0.0074 16.3 0.1 0.051 13.6 0.0 2.3 3 0 0 3 3 3 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE DUF815 PF05673.13 gi|222476115|ref|YP_002564636.1| - 0.0075 15.4 0.0 0.013 14.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_14 PF13173.6 gi|222476115|ref|YP_002564636.1| - 0.0081 16.2 0.0 0.019 15.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain TniB PF05621.11 gi|222476115|ref|YP_002564636.1| - 0.016 14.6 0.0 0.038 13.4 0.0 1.6 1 0 0 1 1 1 0 Bacterial TniB protein ATPase_2 PF01637.18 gi|222476115|ref|YP_002564636.1| - 0.019 14.9 1.3 0.23 11.4 0.1 2.6 2 1 0 2 2 2 0 ATPase domain predominantly from Archaea Cdc6_C PF09079.11 gi|222476115|ref|YP_002564636.1| - 0.031 14.2 0.0 0.078 13.0 0.0 1.6 1 0 0 1 1 1 0 CDC6, C terminal winged helix domain AAA_7 PF12775.7 gi|222476115|ref|YP_002564636.1| - 0.045 13.3 0.0 0.1 12.1 0.0 1.6 1 0 0 1 1 1 0 P-loop containing dynein motor region Sigma54_activat PF00158.26 gi|222476115|ref|YP_002564636.1| - 0.047 13.4 0.0 0.099 12.3 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain RNA_helicase PF00910.22 gi|222476115|ref|YP_002564636.1| - 0.052 13.9 0.1 0.41 11.1 0.0 2.4 2 1 0 2 2 2 0 RNA helicase AAA_33 PF13671.6 gi|222476115|ref|YP_002564636.1| - 0.085 13.0 0.1 0.56 10.4 0.0 2.3 2 1 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|222476115|ref|YP_002564636.1| - 0.1 12.5 0.0 0.37 10.7 0.0 2.0 2 1 0 2 2 2 0 NACHT domain PCP_red PF08369.10 gi|222476115|ref|YP_002564636.1| - 0.16 12.2 0.1 0.37 11.0 0.1 1.6 1 0 0 1 1 1 0 Proto-chlorophyllide reductase 57 kD subunit RNaseH_like PF04308.12 gi|222476116|ref|YP_002564637.1| - 0.043 13.7 0.1 0.071 13.0 0.1 1.5 1 1 0 1 1 1 0 Ribonuclease H-like NLRC4_HD2 PF17776.1 gi|222476116|ref|YP_002564637.1| - 0.087 13.4 0.2 0.13 12.8 0.1 1.3 1 1 0 1 1 1 0 NLRC4 helical domain HD2 N6_Mtase PF02384.16 gi|222476117|ref|YP_002564638.1| - 6.5e-12 45.3 0.0 0.0018 17.6 0.0 4.3 3 1 0 4 4 4 3 N-6 DNA Methylase Eco57I PF07669.11 gi|222476117|ref|YP_002564638.1| - 4.4e-06 27.2 0.0 0.15 12.6 0.0 3.6 2 1 1 3 3 3 2 Eco57I restriction-modification methylase UPF0020 PF01170.18 gi|222476117|ref|YP_002564638.1| - 0.023 14.4 0.0 0.77 9.4 0.0 2.3 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 Methyltransf_31 PF13847.6 gi|222476117|ref|YP_002564638.1| - 0.065 13.0 0.0 0.32 10.8 0.0 2.2 1 1 0 1 1 1 0 Methyltransferase domain MMPL PF03176.15 gi|222476119|ref|YP_002564640.1| - 2.2e-32 112.3 24.9 2.6e-20 72.6 4.6 3.0 2 1 0 2 2 2 2 MMPL family Sterol-sensing PF12349.8 gi|222476119|ref|YP_002564640.1| - 2.2e-15 56.8 5.8 6.3e-09 35.8 0.3 2.4 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation Patched PF02460.18 gi|222476119|ref|YP_002564640.1| - 1.5e-12 46.5 18.5 3.3e-06 25.5 3.5 2.9 2 1 0 2 2 2 2 Patched family SecD_SecF PF02355.16 gi|222476119|ref|YP_002564640.1| - 5.5e-11 42.2 19.0 7.9e-06 25.4 5.7 2.6 2 0 0 2 2 2 2 Protein export membrane protein ACR_tran PF00873.19 gi|222476119|ref|YP_002564640.1| - 1.1e-05 23.3 12.3 1.9e-05 22.6 1.6 2.1 2 0 0 2 2 2 2 AcrB/AcrD/AcrF family HXXEE PF13787.6 gi|222476119|ref|YP_002564640.1| - 6.4 7.6 13.3 3.4 8.5 0.9 3.5 3 0 0 3 3 3 0 Protein of unknown function with HXXEE motif SQHop_cyclase_C PF13243.6 gi|222476120|ref|YP_002564641.1| - 2.6e-41 141.8 5.8 5.2e-40 137.5 1.6 2.5 2 0 0 2 2 2 2 Squalene-hopene cyclase C-terminal domain Prenyltrans PF00432.21 gi|222476120|ref|YP_002564641.1| - 3.6e-12 45.8 4.1 0.0098 15.6 0.1 5.4 4 0 0 4 4 4 4 Prenyltransferase and squalene oxidase repeat SQHop_cyclase_N PF13249.6 gi|222476120|ref|YP_002564641.1| - 2.3e-09 36.8 0.3 1.1 8.2 0.0 6.1 6 0 0 6 6 6 5 Squalene-hopene cyclase N-terminal domain Toprim_N PF08275.11 gi|222476120|ref|YP_002564641.1| - 0.06 13.4 0.0 0.13 12.3 0.0 1.5 1 0 0 1 1 1 0 DNA primase catalytic core, N-terminal domain TED_complement PF07678.14 gi|222476120|ref|YP_002564641.1| - 0.11 11.5 1.8 17 4.3 0.0 4.5 6 1 0 6 6 6 0 A-macroglobulin TED domain DDE_Tnp_IS240 PF13610.6 gi|222476121|ref|YP_002564642.1| - 2.1e-30 105.8 0.0 3e-30 105.3 0.0 1.2 1 0 0 1 1 1 1 DDE domain rve_3 PF13683.6 gi|222476121|ref|YP_002564642.1| - 2.9e-09 36.6 0.4 6.7e-09 35.4 0.4 1.6 1 0 0 1 1 1 1 Integrase core domain rve PF00665.26 gi|222476121|ref|YP_002564642.1| - 0.00059 20.0 0.1 0.0023 18.1 0.1 2.1 1 1 0 1 1 1 1 Integrase core domain DDE_3 PF13358.6 gi|222476121|ref|YP_002564642.1| - 0.021 14.6 0.0 0.82 9.4 0.0 2.2 2 0 0 2 2 2 0 DDE superfamily endonuclease DDE_Tnp_IS66 PF03050.14 gi|222476121|ref|YP_002564642.1| - 0.068 12.6 0.0 0.13 11.7 0.0 1.4 1 1 0 1 1 1 0 Transposase IS66 family MTES_1575 PF18741.1 gi|222476122|ref|YP_002564643.1| - 3.7e-34 116.8 0.3 1.6e-33 114.7 0.1 2.3 2 0 0 2 2 2 1 REase_MTES_1575 DUF4011 PF13195.6 gi|222476122|ref|YP_002564643.1| - 2.1e-31 109.1 0.9 2.1e-31 109.1 0.9 2.5 2 0 0 2 2 1 1 Protein of unknown function (DUF4011) ResIII PF04851.15 gi|222476122|ref|YP_002564643.1| - 2.8e-18 66.5 0.2 7.2e-12 45.6 0.0 4.0 4 0 0 4 4 3 2 Type III restriction enzyme, res subunit AAA_11 PF13086.6 gi|222476122|ref|YP_002564643.1| - 6.9e-18 65.4 1.2 8.8e-08 32.2 0.1 3.9 4 0 0 4 4 3 2 AAA domain AAA_12 PF13087.6 gi|222476122|ref|YP_002564643.1| - 7e-16 58.4 1.5 8.8e-15 54.9 0.5 2.7 2 1 0 2 2 2 1 AAA domain Helicase_C PF00271.31 gi|222476122|ref|YP_002564643.1| - 1.9e-07 31.4 0.0 8.3e-07 29.3 0.0 2.2 1 0 0 1 1 1 1 Helicase conserved C-terminal domain AAA_19 PF13245.6 gi|222476122|ref|YP_002564643.1| - 2.4e-07 31.2 0.1 2.7e-05 24.5 0.0 3.4 4 0 0 4 4 3 1 AAA domain AAA_30 PF13604.6 gi|222476122|ref|YP_002564643.1| - 3.5e-07 30.1 9.9 3e-05 23.8 0.2 5.0 5 0 0 5 5 5 1 AAA domain DUF2075 PF09848.9 gi|222476122|ref|YP_002564643.1| - 8e-06 25.3 1.3 0.16 11.2 0.1 3.5 3 0 0 3 3 3 2 Uncharacterized conserved protein (DUF2075) Helicase_RecD PF05127.14 gi|222476122|ref|YP_002564643.1| - 0.00013 21.9 0.2 1.8 8.4 0.0 3.6 3 0 0 3 3 3 2 Helicase DUF559 PF04480.12 gi|222476122|ref|YP_002564643.1| - 0.00021 21.1 0.0 0.00062 19.6 0.0 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF559) DEAD PF00270.29 gi|222476122|ref|YP_002564643.1| - 0.00049 19.9 0.1 0.24 11.2 0.0 3.9 4 0 0 4 4 4 1 DEAD/DEAH box helicase DUF3320 PF11784.8 gi|222476122|ref|YP_002564643.1| - 0.0036 17.2 0.0 0.058 13.4 0.0 2.5 2 0 0 2 2 2 1 Protein of unknown function (DUF3320) AAA_14 PF13173.6 gi|222476122|ref|YP_002564643.1| - 0.0066 16.5 0.3 9.9 6.2 0.0 3.9 4 0 0 4 4 4 0 AAA domain UvrD-helicase PF00580.21 gi|222476122|ref|YP_002564643.1| - 0.025 14.1 2.3 0.063 12.8 0.1 2.9 2 0 0 2 2 2 0 UvrD/REP helicase N-terminal domain IstB_IS21 PF01695.17 gi|222476122|ref|YP_002564643.1| - 0.06 13.1 0.0 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_34 PF13872.6 gi|222476122|ref|YP_002564643.1| - 0.062 12.2 0.0 0.18 10.7 0.0 1.7 1 0 0 1 1 1 0 P-loop containing NTP hydrolase pore-1 Viral_helicase1 PF01443.18 gi|222476122|ref|YP_002564643.1| - 0.073 12.8 0.4 14 5.4 0.1 3.2 3 0 0 3 3 3 0 Viral (Superfamily 1) RNA helicase BESS PF02944.20 gi|222476122|ref|YP_002564643.1| - 0.09 12.6 0.0 0.28 11.1 0.0 1.9 1 0 0 1 1 1 0 BESS motif AAA_16 PF13191.6 gi|222476122|ref|YP_002564643.1| - 0.094 13.1 2.7 0.62 10.4 0.0 4.0 3 1 1 4 4 3 0 AAA ATPase domain AAA_22 PF13401.6 gi|222476122|ref|YP_002564643.1| - 0.1 12.9 0.1 1.9 8.7 0.0 3.2 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|222476122|ref|YP_002564643.1| - 0.18 11.3 0.0 0.4 10.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region Adeno_IVa2 PF02456.15 gi|222476122|ref|YP_002564643.1| - 0.2 10.4 0.0 0.4 9.4 0.0 1.4 1 0 0 1 1 1 0 Adenovirus IVa2 protein Y1_Tnp PF01797.16 gi|222476123|ref|YP_002564644.1| - 6.1e-38 129.6 0.0 6.8e-38 129.5 0.0 1.0 1 0 0 1 1 1 1 Transposase IS200 like IQ_SEC7_PH PF16453.5 gi|222476123|ref|YP_002564644.1| - 0.02 14.8 0.0 0.023 14.7 0.0 1.2 1 0 0 1 1 1 0 PH domain DUF4974 PF16344.5 gi|222476123|ref|YP_002564644.1| - 0.13 12.3 0.0 0.24 11.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4974) OrfB_Zn_ribbon PF07282.11 gi|222476124|ref|YP_002564645.1| - 2.8e-23 81.6 0.3 4.9e-23 80.8 0.3 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain PDDEXK_1 PF12705.7 gi|222476125|ref|YP_002564646.1| - 7.4e-13 49.0 0.0 3.2e-12 46.9 0.0 2.1 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily TPR_7 PF13176.6 gi|222476127|ref|YP_002564648.1| - 0.045 13.8 0.1 1.4 9.1 0.0 2.7 2 0 0 2 2 2 0 Tetratricopeptide repeat DUF790 PF05626.11 gi|222476128|ref|YP_002564649.1| - 0.018 13.8 0.3 0.022 13.5 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF790) Hs1pro-1_C PF07014.12 gi|222476128|ref|YP_002564649.1| - 0.024 14.1 0.2 0.028 13.9 0.2 1.1 1 0 0 1 1 1 0 Hs1pro-1 protein C-terminus DUF4135 PF13575.6 gi|222476128|ref|YP_002564649.1| - 0.033 13.5 0.2 0.06 12.7 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4135) Mu-like_Pro PF10123.9 gi|222476128|ref|YP_002564649.1| - 0.04 13.5 0.7 0.042 13.4 0.7 1.1 1 0 0 1 1 1 0 Mu-like prophage I protein DUF745 PF05335.13 gi|222476128|ref|YP_002564649.1| - 0.046 13.5 1.9 0.087 12.5 1.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF745) VPS28 PF03997.12 gi|222476128|ref|YP_002564649.1| - 0.057 13.1 0.1 0.07 12.8 0.1 1.2 1 0 0 1 1 1 0 VPS28 protein NBD94 PF16830.5 gi|222476128|ref|YP_002564649.1| - 0.085 13.3 0.1 0.27 11.7 0.0 1.7 1 1 1 2 2 2 0 Nucleotide-Binding Domain 94 of RH Sec15 PF04091.12 gi|222476128|ref|YP_002564649.1| - 0.089 12.2 0.1 0.11 11.9 0.1 1.2 1 0 0 1 1 1 0 Exocyst complex subunit Sec15-like MerR-DNA-bind PF09278.11 gi|222476128|ref|YP_002564649.1| - 0.092 13.3 2.7 0.1 13.1 0.5 2.2 2 1 0 2 2 2 0 MerR, DNA binding RNase_H_2 PF13482.6 gi|222476129|ref|YP_002564650.1| - 3.6e-30 105.1 0.0 5.7e-30 104.5 0.0 1.3 1 0 0 1 1 1 1 RNase_H superfamily HHH_5 PF14520.6 gi|222476129|ref|YP_002564650.1| - 4.4e-12 46.4 1.6 1.4e-11 44.8 0.1 2.6 3 0 0 3 3 3 1 Helix-hairpin-helix domain HHH PF00633.23 gi|222476129|ref|YP_002564650.1| - 2.2e-07 30.4 0.2 0.0012 18.6 0.0 2.9 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|222476129|ref|YP_002564650.1| - 7e-07 29.3 0.1 2.6e-06 27.4 0.1 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|222476129|ref|YP_002564650.1| - 0.00018 21.3 0.1 0.00043 20.0 0.1 1.7 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda RNA_pol_A_CTD PF03118.15 gi|222476129|ref|YP_002564650.1| - 0.0024 17.6 0.1 2.1 8.2 0.0 2.4 2 0 0 2 2 2 2 Bacterial RNA polymerase, alpha chain C terminal domain HHH_8 PF14716.6 gi|222476129|ref|YP_002564650.1| - 0.0082 16.5 0.4 4 7.9 0.1 2.7 2 0 0 2 2 2 2 Helix-hairpin-helix domain HhH-GPD PF00730.25 gi|222476129|ref|YP_002564650.1| - 0.011 16.2 0.0 0.026 15.0 0.0 1.8 1 1 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein HHH_3 PF12836.7 gi|222476129|ref|YP_002564650.1| - 0.07 13.4 0.1 0.66 10.3 0.0 2.1 1 1 0 1 1 1 0 Helix-hairpin-helix motif DEAD PF00270.29 gi|222476130|ref|YP_002564651.1| - 4.7e-23 81.9 0.0 2e-22 79.8 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase DUF1998 PF09369.10 gi|222476130|ref|YP_002564651.1| - 1.5e-16 61.0 0.0 4e-16 59.6 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) ResIII PF04851.15 gi|222476130|ref|YP_002564651.1| - 5.1e-12 46.1 0.0 1.2e-11 44.9 0.0 1.6 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|222476130|ref|YP_002564651.1| - 5.4e-12 46.0 0.0 6.6e-10 39.3 0.0 2.4 2 0 0 2 2 2 1 Helicase conserved C-terminal domain SNF2_N PF00176.23 gi|222476130|ref|YP_002564651.1| - 0.00036 19.4 0.0 0.00055 18.8 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain DUF4058 PF13267.6 gi|222476130|ref|YP_002564651.1| - 0.16 11.4 0.0 0.3 10.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4058) TPR_12 PF13424.6 gi|222476131|ref|YP_002564652.1| - 0.14 12.4 1.8 2.6 8.4 0.4 2.7 2 1 0 2 2 2 0 Tetratricopeptide repeat TPR_14 PF13428.6 gi|222476131|ref|YP_002564652.1| - 0.32 11.9 2.2 23 6.2 0.1 3.0 3 1 0 3 3 3 0 Tetratricopeptide repeat Metallophos_2 PF12850.7 gi|222476132|ref|YP_002564653.1| - 6e-10 39.6 0.0 1.8e-09 38.0 0.0 1.8 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|222476132|ref|YP_002564653.1| - 1.7e-09 38.5 4.5 4e-09 37.3 4.5 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase PGA_cap PF09587.10 gi|222476132|ref|YP_002564653.1| - 0.0095 15.4 0.0 0.011 15.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial capsule synthesis protein PGA_cap AAA_23 PF13476.6 gi|222476133|ref|YP_002564654.1| - 2.3e-07 31.5 13.9 2.3e-07 31.5 13.9 5.5 2 2 0 2 2 1 1 AAA domain AAA_15 PF13175.6 gi|222476133|ref|YP_002564654.1| - 4.5e-06 26.6 7.2 0.0084 15.9 1.3 4.1 2 2 0 3 3 3 2 AAA ATPase domain AAA_21 PF13304.6 gi|222476133|ref|YP_002564654.1| - 6.6e-06 26.2 3.3 0.0022 17.9 0.0 3.7 2 2 0 3 3 3 1 AAA domain, putative AbiEii toxin, Type IV TA system Prefoldin_2 PF01920.20 gi|222476133|ref|YP_002564654.1| - 0.0055 16.6 1.1 0.0055 16.6 1.1 7.3 7 2 0 7 7 7 1 Prefoldin subunit Seryl_tRNA_N PF02403.22 gi|222476133|ref|YP_002564654.1| - 0.012 15.9 5.3 0.012 15.9 5.3 7.0 5 3 2 7 7 7 0 Seryl-tRNA synthetase N-terminal domain Phospho_p8 PF10195.9 gi|222476133|ref|YP_002564654.1| - 0.044 14.3 0.4 0.14 12.7 0.0 2.1 2 0 0 2 2 2 0 DNA-binding nuclear phosphoprotein p8 Med9 PF07544.13 gi|222476133|ref|YP_002564654.1| - 0.058 13.5 0.2 0.058 13.5 0.2 5.5 5 1 0 5 5 5 0 RNA polymerase II transcription mediator complex subunit 9 AAA_13 PF13166.6 gi|222476133|ref|YP_002564654.1| - 0.24 10.0 0.0 0.24 10.0 0.0 4.3 3 2 2 5 5 5 0 AAA domain AAA_27 PF13514.6 gi|222476133|ref|YP_002564654.1| - 0.28 10.7 0.0 0.28 10.7 0.0 3.8 3 1 1 4 4 4 0 AAA domain Terminase_4 PF05119.12 gi|222476133|ref|YP_002564654.1| - 0.41 11.1 5.5 5.2 7.6 0.1 3.8 2 2 0 2 2 2 0 Phage terminase, small subunit AAA_33 PF13671.6 gi|222476133|ref|YP_002564654.1| - 0.76 9.9 0.0 0.76 9.9 0.0 3.8 5 0 0 5 5 5 0 AAA domain SMC_N PF02463.19 gi|222476133|ref|YP_002564654.1| - 1 8.7 14.1 1.9 7.9 0.0 2.3 2 1 0 2 2 2 0 RecF/RecN/SMC N terminal domain ABC_tran PF00005.27 gi|222476133|ref|YP_002564654.1| - 6.8 7.2 8.8 12 6.4 1.1 4.4 2 2 0 2 2 2 0 ABC transporter Phage_integrase PF00589.22 gi|222476135|ref|YP_002564656.1| - 1.4e-08 34.7 0.0 6.4e-08 32.6 0.0 2.0 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_5 PF13102.6 gi|222476135|ref|YP_002564656.1| - 0.00054 20.3 0.0 0.0011 19.2 0.0 1.5 1 0 0 1 1 1 1 Phage integrase SAM-like domain Terminase_4 PF05119.12 gi|222476135|ref|YP_002564656.1| - 0.14 12.7 0.1 0.34 11.4 0.1 1.9 1 1 0 1 1 1 0 Phage terminase, small subunit Trypan_PARP PF05887.11 gi|222476137|ref|YP_002564658.1| - 0.075 13.0 5.4 0.096 12.7 5.4 1.2 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) AAA_31 PF13614.6 gi|222476138|ref|YP_002564659.1| - 4.5e-25 88.6 0.0 6e-25 88.2 0.0 1.1 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|222476138|ref|YP_002564659.1| - 3.5e-10 40.0 0.0 7.3e-10 39.0 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|222476138|ref|YP_002564659.1| - 1.3e-08 34.7 0.6 2e-07 30.8 0.6 2.1 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|222476138|ref|YP_002564659.1| - 2.7e-06 26.8 1.0 1.1e-05 24.8 0.4 2.2 2 1 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.11 gi|222476138|ref|YP_002564659.1| - 2.5e-05 23.7 0.7 0.016 14.5 0.0 2.6 3 0 0 3 3 3 2 ATPase MipZ CBP_BcsQ PF06564.12 gi|222476138|ref|YP_002564659.1| - 7.2e-05 22.4 0.0 0.0048 16.4 0.0 2.8 2 1 0 2 2 2 1 Cellulose biosynthesis protein BcsQ LpxK PF02606.14 gi|222476138|ref|YP_002564659.1| - 0.018 14.1 0.1 0.027 13.6 0.1 1.1 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase ATP_bind_1 PF03029.17 gi|222476138|ref|YP_002564659.1| - 0.051 13.4 0.9 0.42 10.4 0.9 2.0 1 1 0 1 1 1 0 Conserved hypothetical ATP binding protein Fer4_NifH PF00142.18 gi|222476138|ref|YP_002564659.1| - 0.075 12.5 0.1 0.19 11.1 0.2 1.8 2 1 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Bac_luciferase PF00296.20 gi|222476139|ref|YP_002564660.1| - 1.4e-33 116.7 3.5 1.6e-33 116.5 3.5 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase Herpes_UL36 PF03586.13 gi|222476139|ref|YP_002564660.1| - 0.038 13.3 0.2 0.062 12.6 0.2 1.2 1 0 0 1 1 1 0 Herpesvirus UL36 tegument protein OrfB_IS605 PF01385.19 gi|222476141|ref|YP_002564662.1| - 5.1e-25 88.0 0.0 1.2e-24 86.8 0.0 1.6 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|222476141|ref|YP_002564662.1| - 1.2e-20 73.2 1.9 3.9e-20 71.6 1.9 2.0 1 0 0 1 1 1 1 Putative transposase DNA-binding domain C1_2 PF03107.16 gi|222476141|ref|YP_002564662.1| - 0.0041 17.4 0.6 0.011 16.0 0.6 1.7 1 0 0 1 1 1 1 C1 domain TF_Zn_Ribbon PF08271.12 gi|222476141|ref|YP_002564662.1| - 0.069 12.7 2.2 0.16 11.5 2.2 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.7 gi|222476141|ref|YP_002564662.1| - 2.5 8.1 8.0 0.84 9.7 4.4 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain adh_short PF00106.25 gi|222476142|ref|YP_002564663.1| - 4.8e-60 202.4 1.1 5.7e-60 202.1 1.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|222476142|ref|YP_002564663.1| - 1e-46 159.4 0.4 1.3e-46 159.1 0.4 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|222476142|ref|YP_002564663.1| - 4.4e-17 62.6 1.6 5.7e-17 62.2 1.6 1.1 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 gi|222476142|ref|YP_002564663.1| - 1.9e-05 24.6 6.1 3.8e-05 23.6 6.1 1.5 1 1 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|222476142|ref|YP_002564663.1| - 0.00055 19.5 0.4 0.0017 17.9 0.4 2.0 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family THF_DHG_CYH_C PF02882.19 gi|222476142|ref|YP_002564663.1| - 0.0047 16.2 0.5 0.014 14.8 0.0 1.9 3 0 0 3 3 3 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Shikimate_DH PF01488.20 gi|222476142|ref|YP_002564663.1| - 0.034 14.2 0.0 0.079 13.0 0.0 1.7 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase CorA PF01544.18 gi|222476145|ref|YP_002564666.1| - 0.02 14.2 3.1 0.021 14.1 3.1 1.0 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein MutL_C PF08676.11 gi|222476145|ref|YP_002564666.1| - 0.047 13.5 1.0 0.057 13.2 1.0 1.1 1 0 0 1 1 1 0 MutL C terminal dimerisation domain XhlA PF10779.9 gi|222476145|ref|YP_002564666.1| - 0.82 9.9 3.4 1.2 9.4 3.4 1.3 1 0 0 1 1 1 0 Haemolysin XhlA HXXSHH PF07586.11 gi|222476145|ref|YP_002564666.1| - 2.1 7.9 8.6 6.1 6.3 0.3 2.0 1 1 0 2 2 2 0 Protein of unknown function (DUF1552) DUF241 PF03087.14 gi|222476145|ref|YP_002564666.1| - 4.7 7.0 8.4 2.3 8.0 0.3 2.0 1 1 1 2 2 2 0 Arabidopsis protein of unknown function MazE_antitoxin PF04014.18 gi|222476146|ref|YP_002564667.1| - 1.8e-09 37.3 0.1 2.6e-09 36.8 0.1 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|222476146|ref|YP_002564667.1| - 2.5e-06 27.8 0.0 3.9e-06 27.2 0.0 1.4 1 1 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin PIN PF01850.21 gi|222476147|ref|YP_002564668.1| - 1.7e-08 35.0 0.2 2e-07 31.5 0.2 2.0 1 1 0 1 1 1 1 PIN domain tRNA-synt_1g PF09334.11 gi|222476147|ref|YP_002564668.1| - 0.036 12.8 0.0 0.036 12.8 0.0 1.1 1 0 0 1 1 1 0 tRNA synthetases class I (M) DUF2321 PF10083.9 gi|222476147|ref|YP_002564668.1| - 0.071 12.7 0.3 0.15 11.7 0.3 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2321) Zn-ribbon_8 PF09723.10 gi|222476147|ref|YP_002564668.1| - 0.13 12.4 3.2 0.83 9.8 0.2 2.3 1 1 1 2 2 2 0 Zinc ribbon domain zf-C4_Topoisom PF01396.19 gi|222476147|ref|YP_002564668.1| - 1.6 8.6 5.0 10 6.0 0.1 2.3 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger HTH_20 PF12840.7 gi|222476148|ref|YP_002564669.1| - 3.3e-06 27.1 0.0 6.1e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|222476148|ref|YP_002564669.1| - 0.00093 19.0 0.0 0.0025 17.6 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|222476148|ref|YP_002564669.1| - 0.05 13.5 0.1 0.11 12.4 0.1 1.6 1 0 0 1 1 1 0 MarR family LisH_TPL PF17814.1 gi|222476148|ref|YP_002564669.1| - 0.2 11.4 0.2 0.2 11.4 0.2 1.8 2 0 0 2 2 2 0 LisH-like dimerisation domain Mrr_cat PF04471.12 gi|222476149|ref|YP_002564670.1| - 5.5e-26 90.8 0.1 1e-25 90.0 0.1 1.4 1 0 0 1 1 1 1 Restriction endonuclease DZR PF12773.7 gi|222476149|ref|YP_002564670.1| - 0.028 14.4 0.3 0.028 14.4 0.3 2.1 2 0 0 2 2 2 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|222476149|ref|YP_002564670.1| - 0.48 10.2 2.5 1.7 8.5 2.5 2.0 1 0 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|222476149|ref|YP_002564670.1| - 0.51 9.8 3.4 0.68 9.4 1.9 2.0 1 1 1 2 2 2 0 zinc-ribbon domain zf-C2HC5 PF06221.13 gi|222476149|ref|YP_002564670.1| - 3.9 7.5 6.8 11 6.1 6.9 1.7 1 1 0 1 1 1 0 Putative zinc finger motif, C2HC5-type Rrf2 PF02082.20 gi|222476151|ref|YP_002564672.1| - 8.4e-06 26.0 0.0 1.4e-05 25.3 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_20 PF12840.7 gi|222476151|ref|YP_002564672.1| - 0.00014 21.8 0.2 0.003 17.6 0.0 2.6 2 1 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|222476151|ref|YP_002564672.1| - 0.00051 19.9 0.1 0.0025 17.7 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|222476151|ref|YP_002564672.1| - 0.0012 18.6 0.0 0.012 15.4 0.0 2.5 3 0 0 3 3 3 1 IclR helix-turn-helix domain GntR PF00392.21 gi|222476151|ref|YP_002564672.1| - 0.0017 18.0 0.1 0.018 14.7 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family Acid_PPase PF12689.7 gi|222476151|ref|YP_002564672.1| - 0.0023 17.8 0.1 0.016 15.0 0.0 1.9 1 1 1 2 2 2 1 Acid Phosphatase HTH_11 PF08279.12 gi|222476151|ref|YP_002564672.1| - 0.0025 17.7 0.0 0.0063 16.4 0.0 1.7 2 0 0 2 2 2 1 HTH domain TrmB PF01978.19 gi|222476151|ref|YP_002564672.1| - 0.0026 17.6 0.0 0.0075 16.1 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|222476151|ref|YP_002564672.1| - 0.0048 16.7 0.0 0.013 15.3 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_DeoR PF08220.12 gi|222476151|ref|YP_002564672.1| - 0.0052 16.5 0.0 0.022 14.5 0.0 2.0 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|222476151|ref|YP_002564672.1| - 0.0083 16.3 0.0 0.052 13.7 0.0 2.1 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.6 gi|222476151|ref|YP_002564672.1| - 0.0097 15.4 0.0 0.032 13.8 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding DUF1192 PF06698.11 gi|222476151|ref|YP_002564672.1| - 0.057 13.5 0.7 0.057 13.5 0.7 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) LexA_DNA_bind PF01726.16 gi|222476151|ref|YP_002564672.1| - 0.1 12.4 0.0 0.22 11.3 0.0 1.6 1 0 0 1 1 1 0 LexA DNA binding domain HTH_29 PF13551.6 gi|222476151|ref|YP_002564672.1| - 0.13 12.3 0.0 6.7 6.8 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn helix Usp PF00582.26 gi|222476152|ref|YP_002564673.1| - 6.7e-08 33.1 3.4 0.00074 20.0 0.1 2.1 1 1 1 2 2 2 2 Universal stress protein family MoCF_biosynth PF00994.24 gi|222476152|ref|YP_002564673.1| - 0.0008 19.1 0.1 0.005 16.5 0.0 2.0 2 0 0 2 2 2 1 Probable molybdopterin binding domain TrmB PF01978.19 gi|222476154|ref|YP_002564675.1| - 3.2e-10 39.8 0.1 8.4e-10 38.4 0.1 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|222476154|ref|YP_002564675.1| - 3.1e-05 23.4 0.0 0.00028 20.4 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|222476154|ref|YP_002564675.1| - 0.00014 21.6 0.3 0.0012 18.6 0.0 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|222476154|ref|YP_002564675.1| - 0.0014 18.4 0.0 0.0088 15.9 0.0 2.3 1 1 0 2 2 2 1 MarR family Penicillinase_R PF03965.16 gi|222476154|ref|YP_002564675.1| - 0.0061 16.9 0.2 0.012 15.9 0.1 1.6 2 0 0 2 2 2 1 Penicillinase repressor HTH_20 PF12840.7 gi|222476154|ref|YP_002564675.1| - 0.015 15.4 0.0 0.032 14.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|222476154|ref|YP_002564675.1| - 0.053 13.4 0.0 0.14 12.1 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_40 PF14493.6 gi|222476154|ref|YP_002564675.1| - 0.14 12.6 0.1 0.4 11.2 0.0 1.9 2 1 0 2 2 2 0 Helix-turn-helix domain DNA_pol_B PF00136.21 gi|222476155|ref|YP_002564676.1| - 3.5e-25 88.6 0.0 8.5e-25 87.4 0.0 1.6 1 1 0 1 1 1 1 DNA polymerase family B # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halorubrum_lacusprofundi_ATCC_49239_uid58807/NC_012028.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halorubrum_lacusprofundi_ATCC_49239_uid58807/NC_012028.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halorubrum_lacusprofundi_ATCC_49239_uid58807/NC_012028.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halorubrum_lacusprofundi_ATCC_49239_uid58807/NC_012028.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 12:52:16 2019 # [ok]