#                                                                           --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                       accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------             -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
AAA	PF00004.24	gi|257051091|ref|YP_003128924.1|	-	2.1e-92	306.2	0.0	3e-46	156.8	0.0	2.3	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
CDC48_N	PF02359.13	gi|257051091|ref|YP_003128924.1|	-	2.5e-18	65.7	0.6	1.8e-17	63.0	0.1	2.6	3	0	0	3	3	2	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
RuvB_N	PF05496.7	gi|257051091|ref|YP_003128924.1|	-	5.2e-15	55.1	0.0	3.9e-07	29.3	0.0	3.0	3	0	0	3	3	3	2	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_22	PF13401.1	gi|257051091|ref|YP_003128924.1|	-	8e-14	51.9	0.9	3.3e-05	24.0	0.1	4.0	2	2	0	2	2	2	2	AAA	domain
AAA_33	PF13671.1	gi|257051091|ref|YP_003128924.1|	-	8.5e-14	51.6	0.0	1.8e-05	24.6	0.0	2.9	2	1	0	2	2	2	2	AAA	domain
AAA_16	PF13191.1	gi|257051091|ref|YP_003128924.1|	-	3.8e-13	49.8	6.5	1.5e-05	25.0	0.1	3.9	3	2	0	3	3	2	2	AAA	ATPase	domain
AAA_5	PF07728.9	gi|257051091|ref|YP_003128924.1|	-	4e-12	46.0	0.8	1.8e-05	24.4	0.1	3.8	2	2	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
AAA_2	PF07724.9	gi|257051091|ref|YP_003128924.1|	-	5.1e-12	46.0	0.0	1.9e-05	24.6	0.0	2.5	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
AAA_17	PF13207.1	gi|257051091|ref|YP_003128924.1|	-	6.8e-11	43.0	0.0	0.00039	21.2	0.0	3.0	2	0	0	2	2	2	2	AAA	domain
AAA_14	PF13173.1	gi|257051091|ref|YP_003128924.1|	-	4.1e-09	36.4	0.0	0.00088	19.1	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
TIP49	PF06068.8	gi|257051091|ref|YP_003128924.1|	-	1e-08	34.3	0.0	0.00027	19.7	0.0	2.3	2	0	0	2	2	2	2	TIP49	C-terminus
AAA_18	PF13238.1	gi|257051091|ref|YP_003128924.1|	-	1.5e-08	35.0	0.0	0.0049	17.1	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
AAA_28	PF13521.1	gi|257051091|ref|YP_003128924.1|	-	2.1e-08	34.3	0.2	0.004	17.1	0.0	3.3	3	1	0	3	3	3	2	AAA	domain
Zeta_toxin	PF06414.7	gi|257051091|ref|YP_003128924.1|	-	6e-08	32.0	0.0	0.0022	17.1	0.0	2.7	2	1	0	2	2	2	2	Zeta	toxin
IstB_IS21	PF01695.12	gi|257051091|ref|YP_003128924.1|	-	8.1e-08	31.8	0.0	0.011	15.1	0.0	2.5	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
AAA_19	PF13245.1	gi|257051091|ref|YP_003128924.1|	-	2e-07	30.6	5.9	0.0025	17.5	0.0	4.0	4	1	0	4	4	3	2	Part	of	AAA	domain
AAA_25	PF13481.1	gi|257051091|ref|YP_003128924.1|	-	3.4e-07	29.8	7.8	0.012	14.9	0.2	4.1	2	2	1	3	3	3	3	AAA	domain
AAA_24	PF13479.1	gi|257051091|ref|YP_003128924.1|	-	6.7e-07	29.1	0.0	0.0092	15.5	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
Mg_chelatase	PF01078.16	gi|257051091|ref|YP_003128924.1|	-	6.9e-07	28.6	0.1	0.036	13.2	0.1	2.5	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
RNA_helicase	PF00910.17	gi|257051091|ref|YP_003128924.1|	-	7.4e-07	29.3	0.0	0.046	13.8	0.0	2.4	2	0	0	2	2	2	2	RNA	helicase
AAA_3	PF07726.6	gi|257051091|ref|YP_003128924.1|	-	8.6e-07	28.6	0.0	0.02	14.5	0.0	2.5	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
NACHT	PF05729.7	gi|257051091|ref|YP_003128924.1|	-	3.5e-06	26.7	0.7	0.62	9.7	0.0	4.0	4	0	0	4	4	4	1	NACHT	domain
Arch_ATPase	PF01637.13	gi|257051091|ref|YP_003128924.1|	-	9.5e-06	25.4	0.0	0.068	12.8	0.0	2.4	2	0	0	2	2	2	2	Archaeal	ATPase
Sigma54_activat	PF00158.21	gi|257051091|ref|YP_003128924.1|	-	1.7e-05	24.3	0.0	0.46	9.9	0.0	3.6	4	0	0	4	4	4	2	Sigma-54	interaction	domain
Sigma54_activ_2	PF14532.1	gi|257051091|ref|YP_003128924.1|	-	2.4e-05	24.3	0.0	0.14	12.1	0.0	2.5	2	0	0	2	2	2	2	Sigma-54	interaction	domain
ABC_tran	PF00005.22	gi|257051091|ref|YP_003128924.1|	-	2.8e-05	24.4	0.0	0.23	11.7	0.0	2.5	2	0	0	2	2	2	2	ABC	transporter
Parvo_NS1	PF01057.12	gi|257051091|ref|YP_003128924.1|	-	4.7e-05	22.3	0.0	0.053	12.3	0.0	2.2	2	0	0	2	2	2	2	Parvovirus	non-structural	protein	NS1
DUF815	PF05673.8	gi|257051091|ref|YP_003128924.1|	-	5.8e-05	22.1	0.0	0.09	11.6	0.0	2.3	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
PhoH	PF02562.11	gi|257051091|ref|YP_003128924.1|	-	0.00012	21.3	0.6	0.45	9.7	0.0	2.7	3	0	0	3	3	2	2	PhoH-like	protein
KaiC	PF06745.8	gi|257051091|ref|YP_003128924.1|	-	0.00016	20.8	0.6	0.59	9.2	0.0	3.4	3	1	1	4	4	4	2	KaiC
DUF2075	PF09848.4	gi|257051091|ref|YP_003128924.1|	-	0.00016	20.7	0.0	0.33	9.8	0.0	2.3	2	0	0	2	2	2	2	Uncharacterized	conserved	protein	(DUF2075)
AAA_11	PF13086.1	gi|257051091|ref|YP_003128924.1|	-	0.00065	19.3	0.0	0.95	8.9	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
UPF0079	PF02367.12	gi|257051091|ref|YP_003128924.1|	-	0.00072	19.1	0.0	1.4	8.5	0.0	2.4	2	0	0	2	2	2	2	Uncharacterised	P-loop	hydrolase	UPF0079
CDC48_2	PF02933.12	gi|257051091|ref|YP_003128924.1|	-	0.0011	18.4	0.8	0.004	16.7	0.6	2.0	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	domain	2
NB-ARC	PF00931.17	gi|257051091|ref|YP_003128924.1|	-	0.0013	17.7	0.0	0.25	10.1	0.0	2.2	2	0	0	2	2	2	1	NB-ARC	domain
AAA_30	PF13604.1	gi|257051091|ref|YP_003128924.1|	-	0.0051	16.4	0.5	2.2	7.8	0.1	3.3	2	1	0	2	2	2	1	AAA	domain
Cytidylate_kin2	PF13189.1	gi|257051091|ref|YP_003128924.1|	-	0.0082	16.0	0.0	1.6	8.6	0.0	2.2	2	0	0	2	2	2	1	Cytidylate	kinase-like	family
ResIII	PF04851.10	gi|257051091|ref|YP_003128924.1|	-	0.019	14.7	0.0	3	7.6	0.0	2.3	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.24	gi|257051091|ref|YP_003128924.1|	-	0.024	14.1	1.7	52	3.2	0.0	3.9	3	1	1	4	4	4	0	DEAD/DEAH	box	helicase
NTPase_1	PF03266.10	gi|257051091|ref|YP_003128924.1|	-	0.052	13.2	0.6	23	4.6	0.0	3.7	2	2	2	4	4	4	0	NTPase
KTI12	PF08433.5	gi|257051091|ref|YP_003128924.1|	-	0.074	12.2	0.0	12	5.0	0.0	2.4	2	0	0	2	2	2	0	Chromatin	associated	protein	KTI12
PAS_2	PF08446.6	gi|257051091|ref|YP_003128924.1|	-	0.081	13.3	0.0	1.8	9.0	0.0	2.3	2	0	0	2	2	2	0	PAS	fold
SKI	PF01202.17	gi|257051091|ref|YP_003128924.1|	-	0.098	12.5	0.0	16	5.3	0.0	2.5	2	0	0	2	2	2	0	Shikimate	kinase
ATP-synt_ab	PF00006.20	gi|257051091|ref|YP_003128924.1|	-	0.12	11.7	0.0	3.5	7.0	0.0	2.2	2	0	0	2	2	2	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
Polyketide_cyc2	PF10604.4	gi|257051092|ref|YP_003128925.1|	-	1.3e-17	64.2	0.9	1.5e-17	64.0	0.6	1.0	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
COXG	PF06240.8	gi|257051092|ref|YP_003128925.1|	-	8e-06	25.5	0.0	3.9e-05	23.3	0.0	1.8	1	1	1	2	2	2	1	Carbon	monoxide	dehydrogenase	subunit	G	(CoxG)
Polyketide_cyc	PF03364.15	gi|257051092|ref|YP_003128925.1|	-	8.3e-05	22.5	0.3	0.00012	22.0	0.2	1.3	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
AHSA1	PF08327.6	gi|257051092|ref|YP_003128925.1|	-	0.00014	21.9	0.8	0.00056	19.9	0.5	1.9	1	1	0	1	1	1	1	Activator	of	Hsp90	ATPase	homolog	1-like	protein
DUF2505	PF10698.4	gi|257051092|ref|YP_003128925.1|	-	0.00027	20.4	0.5	0.0072	15.8	0.0	2.2	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF2505)
FaeA	PF04703.7	gi|257051093|ref|YP_003128926.1|	-	0.0016	18.5	0.1	0.002	18.2	0.1	1.2	1	0	0	1	1	1	1	FaeA-like	protein
HTH_24	PF13412.1	gi|257051093|ref|YP_003128926.1|	-	0.047	13.0	0.6	0.22	10.9	0.1	2.3	2	1	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
FAD_binding_3	PF01494.14	gi|257051095|ref|YP_003128928.1|	-	1.5e-13	50.5	1.6	5.8e-08	32.1	0.0	3.1	3	0	0	3	3	3	3	FAD	binding	domain
DAO	PF01266.19	gi|257051095|ref|YP_003128928.1|	-	6.7e-11	41.6	3.2	7e-05	21.8	0.1	2.4	1	1	1	2	2	2	2	FAD	dependent	oxidoreductase
Lycopene_cycl	PF05834.7	gi|257051095|ref|YP_003128928.1|	-	2.5e-07	29.9	0.9	0.0087	15.0	0.3	2.5	2	1	0	2	2	2	2	Lycopene	cyclase	protein
Pyr_redox_2	PF07992.9	gi|257051095|ref|YP_003128928.1|	-	4.4e-07	29.9	0.0	1.1e-06	28.6	0.0	1.6	1	1	1	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.9	gi|257051095|ref|YP_003128928.1|	-	9.6e-06	24.3	0.1	7.8e-05	21.3	0.0	1.9	2	0	0	2	2	2	1	HI0933-like	protein
NAD_binding_8	PF13450.1	gi|257051095|ref|YP_003128928.1|	-	2.4e-05	24.2	0.6	0.0001	22.2	0.1	2.3	2	1	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_2	PF00890.19	gi|257051095|ref|YP_003128928.1|	-	8.9e-05	21.5	1.0	0.00022	20.2	0.1	1.9	1	1	1	2	2	2	1	FAD	binding	domain
Pyr_redox_3	PF13738.1	gi|257051095|ref|YP_003128928.1|	-	0.00016	21.8	0.0	0.00029	20.9	0.0	1.4	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.2	gi|257051095|ref|YP_003128928.1|	-	0.00083	18.5	0.1	0.0012	17.9	0.1	1.3	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Thi4	PF01946.12	gi|257051095|ref|YP_003128928.1|	-	0.0071	15.4	0.2	0.031	13.3	0.0	1.9	2	0	0	2	2	2	1	Thi4	family
Trp_halogenase	PF04820.9	gi|257051095|ref|YP_003128928.1|	-	0.0074	14.9	0.1	1.1	7.8	0.1	2.4	3	0	0	3	3	3	1	Tryptophan	halogenase
Pyr_redox	PF00070.22	gi|257051095|ref|YP_003128928.1|	-	0.028	14.8	0.8	7.5	7.0	0.0	2.4	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.17	gi|257051095|ref|YP_003128928.1|	-	0.034	13.0	0.1	0.047	12.5	0.1	1.2	1	0	0	1	1	1	0	Glucose	inhibited	division	protein	A
NAD_binding_9	PF13454.1	gi|257051095|ref|YP_003128928.1|	-	0.15	11.8	1.8	1.2	8.9	0.8	2.5	2	1	0	2	2	2	0	FAD-NAD(P)-binding
PfkB	PF00294.19	gi|257051096|ref|YP_003128929.1|	-	1.4e-33	116.3	0.1	1.6e-33	116.1	0.1	1.0	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Usp	PF00582.21	gi|257051096|ref|YP_003128929.1|	-	0.033	14.3	0.3	0.068	13.3	0.2	1.6	1	0	0	1	1	1	0	Universal	stress	protein	family
MutL_C	PF08676.6	gi|257051097|ref|YP_003128930.1|	-	1e-38	132.1	0.0	1.6e-38	131.5	0.0	1.3	1	0	0	1	1	1	1	MutL	C	terminal	dimerisation	domain
DNA_mis_repair	PF01119.14	gi|257051097|ref|YP_003128930.1|	-	1.7e-33	114.5	0.0	2.6e-33	113.9	0.0	1.3	1	0	0	1	1	1	1	DNA	mismatch	repair	protein,	C-terminal	domain
HATPase_c_3	PF13589.1	gi|257051097|ref|YP_003128930.1|	-	5.3e-12	45.5	0.0	1.1e-11	44.4	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c	PF02518.21	gi|257051097|ref|YP_003128930.1|	-	5.4e-10	38.9	0.3	2.1e-09	37.0	0.2	2.0	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
DUF2939	PF11159.3	gi|257051097|ref|YP_003128930.1|	-	0.064	13.4	0.3	0.29	11.3	0.1	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2939)
DUF1405	PF07187.6	gi|257051098|ref|YP_003128931.1|	-	6.9e-49	165.7	12.3	8.6e-49	165.4	8.5	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1405)
NPV_P10	PF05531.7	gi|257051099|ref|YP_003128932.1|	-	2.5e-06	27.6	1.9	0.00023	21.3	0.2	2.4	1	1	1	2	2	2	1	Nucleopolyhedrovirus	P10	protein
BLOC1_2	PF10046.4	gi|257051099|ref|YP_003128932.1|	-	4.9e-05	23.3	3.4	0.0012	18.9	0.1	3.1	1	1	2	3	3	3	1	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
IncA	PF04156.9	gi|257051099|ref|YP_003128932.1|	-	9.7e-05	22.0	0.7	0.00012	21.7	0.5	1.3	1	0	0	1	1	1	1	IncA	protein
Tropomyosin	PF00261.15	gi|257051099|ref|YP_003128932.1|	-	0.00018	20.7	3.3	0.00021	20.4	1.4	1.6	1	1	0	1	1	1	1	Tropomyosin
Matrilin_ccoil	PF10393.4	gi|257051099|ref|YP_003128932.1|	-	0.00032	19.9	0.9	1	8.7	0.0	3.3	3	0	0	3	3	3	1	Trimeric	coiled-coil	oligomerisation	domain	of	matrilin
Hemagglutinin	PF00509.13	gi|257051099|ref|YP_003128932.1|	-	0.00046	18.4	0.2	0.00064	17.9	0.1	1.2	1	0	0	1	1	1	1	Haemagglutinin
SlyX	PF04102.7	gi|257051099|ref|YP_003128932.1|	-	0.00052	20.3	2.3	0.021	15.1	0.4	3.0	2	1	0	2	2	2	1	SlyX
THOC7	PF05615.8	gi|257051099|ref|YP_003128932.1|	-	0.002	18.4	0.1	0.0031	17.7	0.1	1.3	1	0	0	1	1	1	1	Tho	complex	subunit	7
HsbA	PF12296.3	gi|257051099|ref|YP_003128932.1|	-	0.003	17.4	0.2	0.006	16.4	0.1	1.5	1	0	0	1	1	1	1	Hydrophobic	surface	binding	protein	A
Spectrin	PF00435.16	gi|257051099|ref|YP_003128932.1|	-	0.0031	17.7	0.3	0.1	12.9	0.0	2.2	1	1	0	2	2	2	1	Spectrin	repeat
PTCRA	PF15028.1	gi|257051099|ref|YP_003128932.1|	-	0.0039	16.7	0.0	0.0052	16.3	0.0	1.1	1	0	0	1	1	1	1	Pre-T-cell	antigen	receptor
DUF1664	PF07889.7	gi|257051099|ref|YP_003128932.1|	-	0.0051	16.6	0.6	0.01	15.6	0.3	1.5	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1664)
Prefoldin_2	PF01920.15	gi|257051099|ref|YP_003128932.1|	-	0.0057	16.4	0.5	1.2	8.9	0.2	2.7	3	0	0	3	3	3	1	Prefoldin	subunit
Dynamitin	PF04912.9	gi|257051099|ref|YP_003128932.1|	-	0.0062	15.3	3.0	0.17	10.6	0.5	2.5	1	1	2	3	3	3	2	Dynamitin
PspA_IM30	PF04012.7	gi|257051099|ref|YP_003128932.1|	-	0.0065	15.8	0.2	0.012	15.0	0.1	1.5	1	0	0	1	1	1	1	PspA/IM30	family
Tropomyosin_1	PF12718.2	gi|257051099|ref|YP_003128932.1|	-	0.007	16.2	2.7	0.0078	16.0	0.9	1.7	1	1	1	2	2	2	2	Tropomyosin	like
Reo_sigmaC	PF04582.7	gi|257051099|ref|YP_003128932.1|	-	0.008	15.3	0.6	0.011	14.9	0.4	1.2	1	0	0	1	1	1	1	Reovirus	sigma	C	capsid	protein
DUF3540	PF12059.3	gi|257051099|ref|YP_003128932.1|	-	0.008	15.8	0.2	0.012	15.2	0.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3540)
DUF3584	PF12128.3	gi|257051099|ref|YP_003128932.1|	-	0.014	12.7	2.4	0.014	12.7	1.6	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
Fib_alpha	PF08702.5	gi|257051099|ref|YP_003128932.1|	-	0.015	15.4	0.5	0.31	11.1	0.1	2.6	1	1	2	3	3	3	0	Fibrinogen	alpha/beta	chain	family
DUF3552	PF12072.3	gi|257051099|ref|YP_003128932.1|	-	0.019	14.1	0.4	0.031	13.5	0.3	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3552)
FH2	PF02181.18	gi|257051099|ref|YP_003128932.1|	-	0.027	13.3	0.0	0.046	12.6	0.0	1.3	1	0	0	1	1	1	0	Formin	Homology	2	Domain
PspB	PF06667.7	gi|257051099|ref|YP_003128932.1|	-	0.033	14.1	5.8	7.2	6.6	0.2	3.2	2	1	1	3	3	3	0	Phage	shock	protein	B
FlaC_arch	PF05377.6	gi|257051099|ref|YP_003128932.1|	-	0.033	14.0	0.9	2.8	7.8	0.6	3.2	2	1	1	3	3	3	0	Flagella	accessory	protein	C	(FlaC)
TMF_DNA_bd	PF12329.3	gi|257051099|ref|YP_003128932.1|	-	0.041	13.7	1.6	0.12	12.2	0.3	2.2	2	1	0	2	2	2	0	TATA	element	modulatory	factor	1	DNA	binding
Syntaxin-6_N	PF09177.6	gi|257051099|ref|YP_003128932.1|	-	0.05	14.0	1.1	0.19	12.1	0.4	2.2	1	1	1	2	2	2	0	Syntaxin	6,	N-terminal
DUF4140	PF13600.1	gi|257051099|ref|YP_003128932.1|	-	0.052	14.0	5.7	0.23	11.9	0.1	2.9	1	1	2	3	3	3	0	N-terminal	domain	of	unknown	function	(DUF4140)
DUF16	PF01519.11	gi|257051099|ref|YP_003128932.1|	-	0.059	13.5	0.5	0.15	12.2	0.4	1.8	2	1	0	2	2	1	0	Protein	of	unknown	function	DUF16
YlqD	PF11068.3	gi|257051099|ref|YP_003128932.1|	-	0.064	13.2	0.0	0.11	12.5	0.0	1.3	1	0	0	1	1	1	0	YlqD	protein
Laminin_I	PF06008.9	gi|257051099|ref|YP_003128932.1|	-	0.074	12.3	1.1	0.12	11.7	0.7	1.2	1	0	0	1	1	1	0	Laminin	Domain	I
Flagellar_rod	PF05149.7	gi|257051099|ref|YP_003128932.1|	-	0.076	12.1	0.3	0.12	11.5	0.2	1.2	1	0	0	1	1	1	0	Paraflagellar	rod	protein
ISG65-75	PF11727.3	gi|257051099|ref|YP_003128932.1|	-	0.077	12.0	0.8	0.089	11.8	0.6	1.2	1	0	0	1	1	1	0	Invariant	surface	glycoprotein
UPF0184	PF03670.8	gi|257051099|ref|YP_003128932.1|	-	0.083	13.0	2.3	3.8	7.7	0.2	2.9	1	1	1	2	2	2	0	Uncharacterised	protein	family	(UPF0184)
Phasin	PF05597.6	gi|257051099|ref|YP_003128932.1|	-	0.088	12.5	6.0	2.3	7.9	0.4	2.9	2	1	1	3	3	3	0	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
DUF3422	PF11902.3	gi|257051099|ref|YP_003128932.1|	-	0.088	11.6	1.0	0.24	10.2	0.7	1.9	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3422)
Cluap1	PF10234.4	gi|257051099|ref|YP_003128932.1|	-	0.1	11.8	0.2	0.14	11.3	0.1	1.3	1	0	0	1	1	1	0	Clusterin-associated	protein-1
ADIP	PF11559.3	gi|257051099|ref|YP_003128932.1|	-	0.11	12.3	0.3	0.44	10.4	0.1	2.0	1	1	1	2	2	2	0	Afadin-	and	alpha	-actinin-Binding
Sugarporin_N	PF11471.3	gi|257051099|ref|YP_003128932.1|	-	0.11	12.1	7.2	8.7	6.0	0.3	3.3	3	0	0	3	3	3	0	Maltoporin	periplasmic	N-terminal	extension
DUF1515	PF07439.6	gi|257051099|ref|YP_003128932.1|	-	0.11	12.2	1.2	0.3	10.9	0.5	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1515)
Snapin_Pallidin	PF14712.1	gi|257051099|ref|YP_003128932.1|	-	0.13	12.5	1.1	0.62	10.4	0.2	2.4	2	1	0	2	2	1	0	Snapin/Pallidin
Baculo_PEP_C	PF04513.7	gi|257051099|ref|YP_003128932.1|	-	0.15	11.8	0.1	0.92	9.3	0.1	1.9	1	1	0	1	1	1	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
CENP-F_leu_zip	PF10473.4	gi|257051099|ref|YP_003128932.1|	-	0.15	11.9	1.6	0.45	10.3	0.7	1.8	1	1	0	1	1	1	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
LPP	PF04728.8	gi|257051099|ref|YP_003128932.1|	-	0.18	11.6	2.0	1.1	9.0	0.7	2.5	1	1	1	2	2	2	0	Lipoprotein	leucine-zipper
MtrG	PF04210.8	gi|257051099|ref|YP_003128932.1|	-	0.21	11.3	3.2	2.1	8.0	0.1	3.1	2	1	1	3	3	3	0	Tetrahydromethanopterin	S-methyltransferase,	subunit	G
DivIC	PF04977.10	gi|257051099|ref|YP_003128932.1|	-	0.24	10.8	4.1	2.3	7.7	0.0	2.5	2	1	1	3	3	3	0	Septum	formation	initiator
PSK_trans_fac	PF07704.6	gi|257051099|ref|YP_003128932.1|	-	0.48	11.1	5.4	0.58	10.8	2.7	2.0	2	1	0	2	2	1	0	Rv0623-like	transcription	factor
Hemerythrin	PF01814.18	gi|257051099|ref|YP_003128932.1|	-	0.59	10.2	4.9	3.9	7.6	3.4	2.2	1	1	0	1	1	1	0	Hemerythrin	HHE	cation	binding	domain
DUF2360	PF10152.4	gi|257051099|ref|YP_003128932.1|	-	1.5	9.1	6.6	2.8	8.2	4.5	1.5	1	1	0	1	1	1	0	Predicted	coiled-coil	domain-containing	protein	(DUF2360)
DUF4164	PF13747.1	gi|257051099|ref|YP_003128932.1|	-	1.7	8.8	7.8	3.4	7.8	3.1	3.1	2	1	1	3	3	2	0	Domain	of	unknown	function	(DUF4164)
T2SF	PF00482.18	gi|257051104|ref|YP_003128937.1|	-	0.00036	20.4	0.3	0.0048	16.7	0.0	2.5	2	0	0	2	2	2	1	Type	II	secretion	system	(T2SS),	protein	F
T2SE	PF00437.15	gi|257051105|ref|YP_003128938.1|	-	7.6e-38	129.9	0.0	1.3e-37	129.2	0.0	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
FtsK_SpoIIIE	PF01580.13	gi|257051105|ref|YP_003128938.1|	-	0.00096	18.6	0.3	0.0083	15.6	0.0	2.3	2	0	0	2	2	2	1	FtsK/SpoIIIE	family
ABC_tran	PF00005.22	gi|257051105|ref|YP_003128938.1|	-	0.0017	18.6	0.0	0.0033	17.7	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
TrwB_AAD_bind	PF10412.4	gi|257051105|ref|YP_003128938.1|	-	0.0029	16.2	0.0	0.0045	15.6	0.0	1.2	1	0	0	1	1	1	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
cobW	PF02492.14	gi|257051105|ref|YP_003128938.1|	-	0.0041	16.5	0.1	0.0074	15.7	0.1	1.4	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_29	PF13555.1	gi|257051105|ref|YP_003128938.1|	-	0.0044	16.5	0.4	0.011	15.1	0.2	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_14	PF13173.1	gi|257051105|ref|YP_003128938.1|	-	0.02	14.7	0.0	0.044	13.6	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_16	PF13191.1	gi|257051105|ref|YP_003128938.1|	-	0.02	14.8	1.7	0.13	12.2	0.1	2.6	2	1	0	2	2	2	0	AAA	ATPase	domain
Zeta_toxin	PF06414.7	gi|257051105|ref|YP_003128938.1|	-	0.021	13.9	0.0	0.047	12.7	0.0	1.5	1	0	0	1	1	1	0	Zeta	toxin
AAA_25	PF13481.1	gi|257051105|ref|YP_003128938.1|	-	0.033	13.5	0.4	0.27	10.5	0.1	2.7	4	0	0	4	4	4	0	AAA	domain
AAA_10	PF12846.2	gi|257051105|ref|YP_003128938.1|	-	0.05	13.0	0.0	0.13	11.6	0.0	1.7	1	0	0	1	1	1	0	AAA-like	domain
MobB	PF03205.9	gi|257051105|ref|YP_003128938.1|	-	0.065	12.9	0.0	0.15	11.7	0.0	1.6	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_22	PF13401.1	gi|257051105|ref|YP_003128938.1|	-	0.066	13.3	0.1	0.51	10.4	0.0	2.5	2	1	0	2	2	2	0	AAA	domain
KaiC	PF06745.8	gi|257051105|ref|YP_003128938.1|	-	0.074	12.1	0.0	0.14	11.2	0.0	1.3	1	0	0	1	1	1	0	KaiC
AAA_24	PF13479.1	gi|257051105|ref|YP_003128938.1|	-	0.093	12.2	0.1	0.17	11.4	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
DUF258	PF03193.11	gi|257051105|ref|YP_003128938.1|	-	0.18	10.9	0.0	0.34	10.0	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
ThiS	PF02597.15	gi|257051106|ref|YP_003128939.1|	-	6.3e-16	58.5	0.1	7e-16	58.4	0.1	1.0	1	0	0	1	1	1	1	ThiS	family
MoaC	PF01967.16	gi|257051107|ref|YP_003128940.1|	-	6e-43	145.7	1.6	6.8e-43	145.5	1.1	1.0	1	0	0	1	1	1	1	MoaC	family
HTH_10	PF04967.7	gi|257051108|ref|YP_003128941.1|	-	7.6e-20	70.2	0.2	1.2e-19	69.5	0.1	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
NIT	PF08376.5	gi|257051108|ref|YP_003128941.1|	-	0.16	11.4	2.2	0.098	12.1	0.4	1.4	2	0	0	2	2	2	0	Nitrate	and	nitrite	sensing
CopD	PF05425.8	gi|257051109|ref|YP_003128942.1|	-	0.0021	18.2	12.0	0.014	15.5	0.9	2.8	2	1	0	2	2	2	2	Copper	resistance	protein	D
ABC2_membrane_4	PF12730.2	gi|257051109|ref|YP_003128942.1|	-	0.064	12.4	4.9	1.7	7.7	1.0	2.2	2	1	0	2	2	2	0	ABC-2	family	transporter	protein
Cytochrom_B_N	PF00033.14	gi|257051109|ref|YP_003128942.1|	-	0.13	11.6	0.1	0.13	11.6	0.0	2.1	2	1	0	2	2	2	0	Cytochrome	b(N-terminal)/b6/petB
DUF4131	PF13567.1	gi|257051109|ref|YP_003128942.1|	-	0.2	11.0	2.9	7.8	5.8	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4131)
OppC_N	PF12911.2	gi|257051109|ref|YP_003128942.1|	-	1.1	8.6	8.5	3.5	7.0	0.4	3.2	3	0	0	3	3	3	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
Rieske	PF00355.21	gi|257051110|ref|YP_003128943.1|	-	5.9e-15	54.6	0.0	9.3e-15	53.9	0.0	1.3	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
TAT_signal	PF10518.4	gi|257051110|ref|YP_003128943.1|	-	0.044	13.7	0.4	0.044	13.7	0.3	2.0	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Cytochrom_B_N_2	PF13631.1	gi|257051111|ref|YP_003128944.1|	-	5.2e-43	146.7	0.2	5.2e-43	146.7	0.1	2.5	3	0	0	3	3	3	1	Cytochrome	b(N-terminal)/b6/petB
Cytochrom_B_N	PF00033.14	gi|257051111|ref|YP_003128944.1|	-	3.9e-08	32.8	12.8	3.9e-08	32.8	8.9	2.7	2	1	1	3	3	3	1	Cytochrome	b(N-terminal)/b6/petB
Cytochrom_B_C	PF00032.12	gi|257051111|ref|YP_003128944.1|	-	1.2e-05	25.5	0.4	1.2e-05	25.5	0.3	2.6	3	1	0	3	3	3	1	Cytochrome	b(C-terminal)/b6/petD
SP_C-Propep	PF08999.5	gi|257051111|ref|YP_003128944.1|	-	0.0084	15.5	0.0	0.27	10.7	0.0	2.5	2	0	0	2	2	2	1	Surfactant	protein	C,	N	terminal	propeptide
DUF1956	PF09209.6	gi|257051111|ref|YP_003128944.1|	-	0.036	13.9	0.0	0.075	12.9	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1956)
DoxX_2	PF13564.1	gi|257051112|ref|YP_003128945.1|	-	0.012	15.5	0.9	0.012	15.5	0.6	1.1	1	0	0	1	1	1	0	DoxX-like	family
Molybdopterin	PF00384.17	gi|257051113|ref|YP_003128946.1|	-	3.4e-91	306.1	0.0	5e-91	305.6	0.0	1.2	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.16	gi|257051113|ref|YP_003128946.1|	-	3.5e-21	75.0	0.0	7.8e-21	73.9	0.0	1.5	1	0	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
UCR_Fe-S_N	PF10399.4	gi|257051113|ref|YP_003128946.1|	-	0.00048	19.2	1.0	0.00094	18.2	0.7	1.4	1	0	0	1	1	1	1	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
TAT_signal	PF10518.4	gi|257051113|ref|YP_003128946.1|	-	0.0089	15.9	4.8	0.018	15.0	3.3	1.5	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Molybdop_Fe4S4	PF04879.11	gi|257051113|ref|YP_003128946.1|	-	0.036	13.8	0.3	0.076	12.8	0.2	1.5	1	0	0	1	1	1	0	Molybdopterin	oxidoreductase	Fe4S4	domain
CDC48_N	PF02359.13	gi|257051113|ref|YP_003128946.1|	-	0.13	12.2	0.0	0.3	11.0	0.0	1.5	1	0	0	1	1	1	0	Cell	division	protein	48	(CDC48),	N-terminal	domain
Fer4_11	PF13247.1	gi|257051114|ref|YP_003128947.1|	-	5.4e-34	116.0	9.2	5.4e-34	116.0	6.4	2.1	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|257051114|ref|YP_003128947.1|	-	8.9e-14	51.6	8.7	2.6e-08	34.1	0.2	3.4	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|257051114|ref|YP_003128947.1|	-	4.8e-10	39.0	19.1	6.1e-06	25.9	4.3	3.3	3	0	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|257051114|ref|YP_003128947.1|	-	6.8e-10	39.0	17.9	0.01	16.0	0.1	3.4	3	0	0	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|257051114|ref|YP_003128947.1|	-	6.9e-09	35.1	20.3	1.3e-05	24.7	2.2	4.3	4	0	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_15	PF13459.1	gi|257051114|ref|YP_003128947.1|	-	0.00018	22.0	11.4	0.14	12.7	0.0	3.7	3	1	0	3	3	3	2	4Fe-4S	single	cluster	domain
Fer4	PF00037.22	gi|257051114|ref|YP_003128947.1|	-	0.00034	20.0	26.9	0.0097	15.4	2.0	5.1	5	0	0	5	5	5	3	4Fe-4S	binding	domain
Fer4_17	PF13534.1	gi|257051114|ref|YP_003128947.1|	-	0.0013	19.0	18.3	0.093	13.0	0.1	4.1	3	1	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|257051114|ref|YP_003128947.1|	-	0.0022	17.7	26.8	0.044	13.6	0.7	4.5	4	1	1	5	5	5	3	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|257051114|ref|YP_003128947.1|	-	0.0047	16.7	23.3	0.0065	16.3	0.8	3.0	3	1	1	4	4	3	2	4Fe-4S	dicluster	domain
Fer4_13	PF13370.1	gi|257051114|ref|YP_003128947.1|	-	0.0063	16.8	11.0	0.017	15.4	0.1	3.5	3	0	0	3	3	3	1	4Fe-4S	single	cluster	domain
Fer4_3	PF12798.2	gi|257051114|ref|YP_003128947.1|	-	0.015	15.7	5.9	0.015	15.7	4.1	4.3	4	0	0	4	4	4	0	4Fe-4S	binding	domain
Fer4_4	PF12800.2	gi|257051114|ref|YP_003128947.1|	-	0.027	14.7	1.4	0.027	14.7	1.0	4.3	5	0	0	5	5	4	0	4Fe-4S	binding	domain
Fer4_8	PF13183.1	gi|257051114|ref|YP_003128947.1|	-	0.12	12.4	22.6	0.016	15.1	6.1	3.5	1	1	2	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|257051114|ref|YP_003128947.1|	-	5.5	7.8	26.7	23	5.8	2.8	4.3	3	2	0	3	3	3	0	4Fe-4S	double	cluster	binding	domain
EB_dh	PF09459.5	gi|257051115|ref|YP_003128948.1|	-	8.2e-22	77.8	6.7	5.5e-20	71.8	4.6	2.4	1	1	0	1	1	1	1	Ethylbenzene	dehydrogenase
PepSY_2	PF13670.1	gi|257051115|ref|YP_003128948.1|	-	0.24	11.3	0.1	0.24	11.3	0.1	2.6	2	1	0	2	2	2	0	Peptidase	propeptide	and	YPEB	domain
DUF3485	PF11984.3	gi|257051115|ref|YP_003128948.1|	-	4.4	6.3	10.2	0.19	10.7	1.3	2.7	3	1	0	3	3	3	0	Protein	of	unknown	function	(DUF3485)
Nitrate_red_del	PF02613.10	gi|257051116|ref|YP_003128949.1|	-	5.5e-07	29.4	3.8	2.3e-06	27.4	2.0	2.3	1	1	0	1	1	1	1	Nitrate	reductase	delta	subunit
Pox_P21	PF05313.7	gi|257051117|ref|YP_003128950.1|	-	0.056	12.7	1.2	0.097	11.9	0.8	1.3	1	0	0	1	1	1	0	Poxvirus	P21	membrane	protein
HEAT_2	PF13646.1	gi|257051118|ref|YP_003128951.1|	-	1.3e-30	105.5	29.1	2.9e-14	53.0	2.3	3.1	1	1	3	4	4	4	3	HEAT	repeats
HEAT	PF02985.17	gi|257051118|ref|YP_003128951.1|	-	3e-13	48.6	15.6	0.00084	19.2	0.0	5.7	6	0	0	6	6	6	4	HEAT	repeat
HEAT_EZ	PF13513.1	gi|257051118|ref|YP_003128951.1|	-	4e-10	39.8	19.9	0.0052	17.2	1.5	5.2	4	2	2	6	6	6	3	HEAT-like	repeat
Adaptin_N	PF01602.15	gi|257051118|ref|YP_003128951.1|	-	4.5e-05	21.9	0.0	0.00012	20.5	0.0	1.6	2	0	0	2	2	2	1	Adaptin	N	terminal	region
HEAT_PBS	PF03130.11	gi|257051118|ref|YP_003128951.1|	-	0.014	15.7	15.3	0.1	13.1	0.1	5.3	5	1	0	5	5	5	0	PBS	lyase	HEAT-like	repeat
Cnd1	PF12717.2	gi|257051118|ref|YP_003128951.1|	-	0.024	14.5	0.0	0.58	9.9	0.0	2.9	1	1	1	2	2	2	0	non-SMC	mitotic	condensation	complex	subunit	1
Vac14_Fab1_bd	PF12755.2	gi|257051118|ref|YP_003128951.1|	-	0.03	14.6	0.0	15	6.0	0.0	3.4	2	2	1	3	3	3	0	Vacuolar	14	Fab1-binding	region
Radical_SAM	PF04055.16	gi|257051120|ref|YP_003128953.1|	-	2e-20	73.6	0.0	3e-20	73.0	0.0	1.3	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_12	PF13353.1	gi|257051120|ref|YP_003128953.1|	-	1.1e-06	28.8	0.0	1.9e-06	28.0	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.1	gi|257051120|ref|YP_003128953.1|	-	1.9e-06	27.8	0.0	3.5e-06	27.0	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
TP_methylase	PF00590.15	gi|257051120|ref|YP_003128953.1|	-	0.095	12.3	0.1	0.85	9.2	0.0	2.2	2	0	0	2	2	2	0	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
DUF2249	PF10006.4	gi|257051121|ref|YP_003128954.1|	-	2.7e-24	84.5	0.4	3.4e-24	84.2	0.3	1.1	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2249)
TusA	PF01206.12	gi|257051121|ref|YP_003128954.1|	-	0.0053	16.3	0.0	0.0086	15.6	0.0	1.3	1	0	0	1	1	1	1	Sulfurtransferase	TusA
MOSC	PF03473.12	gi|257051122|ref|YP_003128955.1|	-	9.1e-23	80.1	0.0	1.7e-22	79.2	0.0	1.4	2	0	0	2	2	2	1	MOSC	domain
MOSC_N	PF03476.11	gi|257051122|ref|YP_003128955.1|	-	1.9e-16	59.8	0.2	5.9e-16	58.2	0.1	1.8	1	1	0	1	1	1	1	MOSC	N-terminal	beta	barrel	domain
Dak1	PF02733.12	gi|257051122|ref|YP_003128955.1|	-	0.12	10.8	0.0	0.16	10.5	0.0	1.1	1	0	0	1	1	1	0	Dak1	domain
DUF2249	PF10006.4	gi|257051123|ref|YP_003128956.1|	-	1.2e-19	69.5	0.1	1.5e-19	69.2	0.1	1.1	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2249)
Cu-oxidase_3	PF07732.10	gi|257051124|ref|YP_003128957.1|	-	5.1e-13	48.7	0.2	5.6e-12	45.4	0.0	2.1	2	0	0	2	2	2	1	Multicopper	oxidase
Cu-oxidase_2	PF07731.9	gi|257051124|ref|YP_003128957.1|	-	3.5e-06	26.5	5.2	2.5e-05	23.7	0.0	3.6	3	2	1	4	4	4	1	Multicopper	oxidase
Copper-bind	PF00127.15	gi|257051124|ref|YP_003128957.1|	-	5.5e-06	26.5	0.8	4.7e-05	23.5	0.2	2.5	2	1	0	2	2	2	1	Copper	binding	proteins,	plastocyanin/azurin	family
TAT_signal	PF10518.4	gi|257051124|ref|YP_003128957.1|	-	0.009	15.9	6.9	0.019	14.9	4.8	1.6	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF3558	PF12079.3	gi|257051124|ref|YP_003128957.1|	-	0.0095	15.5	0.8	0.087	12.4	0.4	2.1	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF3558)
Cupredoxin_1	PF13473.1	gi|257051124|ref|YP_003128957.1|	-	0.011	15.5	0.0	0.03	14.2	0.0	1.7	1	1	0	1	1	1	0	Cupredoxin-like	domain
Cu-oxidase	PF00394.17	gi|257051124|ref|YP_003128957.1|	-	0.041	13.7	0.1	0.41	10.5	0.0	2.4	3	0	0	3	3	3	0	Multicopper	oxidase
MoeA_N	PF03453.12	gi|257051125|ref|YP_003128958.1|	-	1.2e-44	151.4	3.9	2.7e-44	150.3	2.7	1.6	1	0	0	1	1	1	1	MoeA	N-terminal	region	(domain	I	and	II)
MoCF_biosynth	PF00994.19	gi|257051125|ref|YP_003128958.1|	-	1.7e-28	98.8	0.1	3.2e-28	97.9	0.1	1.5	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
PBP_like	PF12727.2	gi|257051125|ref|YP_003128958.1|	-	3.1e-18	65.4	0.3	8.8e-18	63.9	0.2	1.8	1	0	0	1	1	1	1	PBP	superfamily	domain
MoeA_C	PF03454.10	gi|257051125|ref|YP_003128958.1|	-	3.7e-14	52.4	1.0	2e-13	50.0	0.0	2.9	4	0	0	4	4	4	1	MoeA	C-terminal	region	(domain	IV)
SBP_bac_11	PF13531.1	gi|257051125|ref|YP_003128958.1|	-	2.3e-05	24.1	0.6	7.4e-05	22.4	0.4	1.8	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
MoeA_N	PF03453.12	gi|257051126|ref|YP_003128959.1|	-	1.3e-35	122.1	5.9	2.3e-35	121.3	4.1	1.4	1	0	0	1	1	1	1	MoeA	N-terminal	region	(domain	I	and	II)
MoCF_biosynth	PF00994.19	gi|257051126|ref|YP_003128959.1|	-	1e-29	102.7	0.1	1.9e-29	101.9	0.1	1.4	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
MoeA_C	PF03454.10	gi|257051126|ref|YP_003128959.1|	-	1e-16	60.6	1.0	9.2e-16	57.5	0.4	2.8	2	0	0	2	2	2	1	MoeA	C-terminal	region	(domain	IV)
PASTA	PF03793.14	gi|257051126|ref|YP_003128959.1|	-	0.003	17.1	2.0	0.019	14.6	0.2	2.5	2	0	0	2	2	2	1	PASTA	domain
NTP_transf_3	PF12804.2	gi|257051127|ref|YP_003128960.1|	-	2.8e-30	105.5	0.4	3.7e-30	105.1	0.2	1.1	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
CofC	PF01983.11	gi|257051127|ref|YP_003128960.1|	-	0.042	12.8	0.0	0.05	12.5	0.0	1.2	1	0	0	1	1	1	0	Guanylyl	transferase	CofC	like
MoaE	PF02391.12	gi|257051128|ref|YP_003128961.1|	-	4.6e-24	84.4	0.1	8e-24	83.6	0.1	1.4	1	0	0	1	1	1	1	MoaE	protein
MobB	PF03205.9	gi|257051128|ref|YP_003128961.1|	-	9.5e-17	61.0	0.1	1.8e-16	60.1	0.1	1.5	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_17	PF13207.1	gi|257051128|ref|YP_003128961.1|	-	6.8e-06	26.8	1.5	4.4e-05	24.2	1.0	2.3	1	1	0	1	1	1	1	AAA	domain
ArgK	PF03308.11	gi|257051128|ref|YP_003128961.1|	-	7.6e-05	21.6	0.1	0.00013	20.8	0.1	1.4	1	0	0	1	1	1	1	ArgK	protein
AAA_16	PF13191.1	gi|257051128|ref|YP_003128961.1|	-	0.00024	21.1	0.4	0.001	19.0	0.2	2.0	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_18	PF13238.1	gi|257051128|ref|YP_003128961.1|	-	0.00036	20.8	0.5	0.0059	16.9	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
MMR_HSR1	PF01926.18	gi|257051128|ref|YP_003128961.1|	-	0.0014	18.5	0.1	0.0024	17.8	0.0	1.7	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
PRK	PF00485.13	gi|257051128|ref|YP_003128961.1|	-	0.0015	18.1	0.0	0.0023	17.5	0.0	1.3	1	0	0	1	1	1	1	Phosphoribulokinase	/	Uridine	kinase	family
NTPase_1	PF03266.10	gi|257051128|ref|YP_003128961.1|	-	0.0019	17.9	0.3	0.0035	17.0	0.2	1.4	1	0	0	1	1	1	1	NTPase
ABC_tran	PF00005.22	gi|257051128|ref|YP_003128961.1|	-	0.0056	16.9	0.0	0.0097	16.2	0.0	1.5	1	0	0	1	1	1	1	ABC	transporter
DUF463	PF04317.7	gi|257051128|ref|YP_003128961.1|	-	0.0061	15.1	0.0	0.0096	14.5	0.0	1.2	1	0	0	1	1	1	1	YcjX-like	family,	DUF463
GTP_EFTU	PF00009.22	gi|257051128|ref|YP_003128961.1|	-	0.0079	15.6	0.1	0.015	14.7	0.1	1.5	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
APS_kinase	PF01583.15	gi|257051128|ref|YP_003128961.1|	-	0.011	15.3	0.0	0.081	12.5	0.0	2.1	2	0	0	2	2	2	0	Adenylylsulphate	kinase
AAA_29	PF13555.1	gi|257051128|ref|YP_003128961.1|	-	0.017	14.6	0.0	0.04	13.4	0.0	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.1	gi|257051128|ref|YP_003128961.1|	-	0.019	15.0	0.0	0.032	14.3	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_28	PF13521.1	gi|257051128|ref|YP_003128961.1|	-	0.044	13.7	0.5	0.085	12.8	0.1	1.7	2	0	0	2	2	1	0	AAA	domain
ATP_bind_1	PF03029.12	gi|257051128|ref|YP_003128961.1|	-	0.063	12.8	0.1	0.16	11.4	0.0	1.7	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
CbiA	PF01656.18	gi|257051128|ref|YP_003128961.1|	-	0.066	12.6	0.8	0.2	11.0	0.4	1.9	1	1	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
Arch_ATPase	PF01637.13	gi|257051128|ref|YP_003128961.1|	-	0.067	12.8	0.0	0.13	11.9	0.0	1.5	1	0	0	1	1	1	0	Archaeal	ATPase
AAA_10	PF12846.2	gi|257051128|ref|YP_003128961.1|	-	0.071	12.5	0.0	0.25	10.7	0.0	1.7	1	1	0	2	2	2	0	AAA-like	domain
Guanylate_kin	PF00625.16	gi|257051128|ref|YP_003128961.1|	-	0.073	12.5	0.2	0.19	11.1	0.0	1.7	2	0	0	2	2	2	0	Guanylate	kinase
Dynamin_N	PF00350.18	gi|257051128|ref|YP_003128961.1|	-	0.075	12.8	0.1	0.16	11.8	0.0	1.5	1	0	0	1	1	1	0	Dynamin	family
Miro	PF08477.8	gi|257051128|ref|YP_003128961.1|	-	0.081	13.4	0.0	0.56	10.7	0.0	2.1	2	0	0	2	2	2	0	Miro-like	protein
UPF0079	PF02367.12	gi|257051128|ref|YP_003128961.1|	-	0.088	12.4	0.2	0.26	10.9	0.1	1.8	2	0	0	2	2	2	0	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_14	PF13173.1	gi|257051128|ref|YP_003128961.1|	-	0.11	12.4	0.0	0.21	11.4	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
DUF258	PF03193.11	gi|257051128|ref|YP_003128961.1|	-	0.16	11.1	0.0	0.24	10.5	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
MoCF_biosynth	PF00994.19	gi|257051129|ref|YP_003128962.1|	-	9.5e-30	102.9	0.7	1.1e-29	102.7	0.5	1.0	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
DUF485	PF04341.7	gi|257051130|ref|YP_003128963.1|	-	0.026	14.2	0.7	0.03	14.0	0.5	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF485
DUF1049	PF06305.6	gi|257051130|ref|YP_003128963.1|	-	0.079	12.4	2.5	0.12	11.8	1.8	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1049)
IncA	PF04156.9	gi|257051130|ref|YP_003128963.1|	-	0.46	10.0	2.7	0.5	9.9	1.9	1.1	1	0	0	1	1	1	0	IncA	protein
COX1	PF00115.15	gi|257051131|ref|YP_003128964.1|	-	2.1e-158	527.6	58.4	2.9e-158	527.1	40.5	1.1	1	0	0	1	1	1	1	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
DUF3154	PF11351.3	gi|257051132|ref|YP_003128965.1|	-	0.048	13.3	0.4	0.063	13.0	0.3	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3154)
DUF2721	PF11026.3	gi|257051132|ref|YP_003128965.1|	-	0.073	12.7	0.3	0.082	12.5	0.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2721)
RDD	PF06271.7	gi|257051132|ref|YP_003128965.1|	-	0.24	11.3	1.9	0.29	11.0	1.3	1.0	1	0	0	1	1	1	0	RDD	family
Vma12	PF11712.3	gi|257051132|ref|YP_003128965.1|	-	0.48	10.1	2.1	0.52	10.0	1.5	1.1	1	0	0	1	1	1	0	Endoplasmic	reticulum-based	factor	for	assembly	of	V-ATPase
Cyt_c_ox_IV	PF12270.3	gi|257051133|ref|YP_003128966.1|	-	0.039	13.6	1.4	0.039	13.6	1.0	1.7	2	1	0	2	2	2	0	Cytochrome	c	oxidase	subunit	IV
CENP-F_leu_zip	PF10473.4	gi|257051134|ref|YP_003128967.1|	-	7.2e-05	22.6	15.0	7.2e-05	22.6	10.4	1.7	2	0	0	2	2	1	1	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
TBPIP	PF07106.8	gi|257051134|ref|YP_003128967.1|	-	0.0017	17.8	9.7	0.0032	17.0	6.7	1.3	1	0	0	1	1	1	1	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
APG6	PF04111.7	gi|257051134|ref|YP_003128967.1|	-	0.0019	17.3	14.1	0.0048	15.9	9.8	1.6	1	0	0	1	1	1	1	Autophagy	protein	Apg6
DUF342	PF03961.8	gi|257051134|ref|YP_003128967.1|	-	0.0035	15.8	4.1	0.0056	15.1	2.8	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF342)
GAS	PF13851.1	gi|257051134|ref|YP_003128967.1|	-	0.0043	16.2	10.2	0.0078	15.4	7.1	1.3	1	0	0	1	1	1	1	Growth-arrest	specific	micro-tubule	binding
THOC7	PF05615.8	gi|257051134|ref|YP_003128967.1|	-	0.0058	16.8	13.1	0.014	15.6	9.1	1.7	1	0	0	1	1	1	1	Tho	complex	subunit	7
V_ATPase_I	PF01496.14	gi|257051134|ref|YP_003128967.1|	-	0.0071	14.2	9.2	0.011	13.6	6.4	1.2	1	0	0	1	1	1	1	V-type	ATPase	116kDa	subunit	family
IncA	PF04156.9	gi|257051134|ref|YP_003128967.1|	-	0.0078	15.8	18.2	0.017	14.7	12.6	1.6	1	0	0	1	1	1	1	IncA	protein
Spc7	PF08317.6	gi|257051134|ref|YP_003128967.1|	-	0.0082	14.8	8.7	0.014	14.0	6.0	1.3	1	0	0	1	1	1	1	Spc7	kinetochore	protein
Mnd1	PF03962.10	gi|257051134|ref|YP_003128967.1|	-	0.0084	15.7	12.8	0.0084	15.7	8.9	2.8	3	1	0	3	3	2	1	Mnd1	family
DUF2968	PF11180.3	gi|257051134|ref|YP_003128967.1|	-	0.009	15.4	11.3	0.039	13.3	7.8	2.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2968)
EzrA	PF06160.7	gi|257051134|ref|YP_003128967.1|	-	0.0098	14.1	10.5	0.015	13.4	7.3	1.1	1	0	0	1	1	1	1	Septation	ring	formation	regulator,	EzrA
DivIC	PF04977.10	gi|257051134|ref|YP_003128967.1|	-	0.011	15.1	17.7	0.098	12.1	2.6	3.2	1	1	1	2	2	2	0	Septum	formation	initiator
AAA_23	PF13476.1	gi|257051134|ref|YP_003128967.1|	-	0.012	15.9	2.4	0.021	15.1	1.6	1.5	1	0	0	1	1	1	0	AAA	domain
DUF4201	PF13870.1	gi|257051134|ref|YP_003128967.1|	-	0.017	14.5	11.3	0.12	11.7	7.7	2.0	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4201)
AAA_13	PF13166.1	gi|257051134|ref|YP_003128967.1|	-	0.03	12.8	7.8	0.05	12.0	5.4	1.3	1	0	0	1	1	1	0	AAA	domain
TMF_DNA_bd	PF12329.3	gi|257051134|ref|YP_003128967.1|	-	0.041	13.6	16.7	0.29	10.9	11.4	2.6	1	1	1	2	2	2	0	TATA	element	modulatory	factor	1	DNA	binding
TMF_TATA_bd	PF12325.3	gi|257051134|ref|YP_003128967.1|	-	0.047	13.4	14.8	0.32	10.7	10.0	2.5	1	1	1	2	2	2	0	TATA	element	modulatory	factor	1	TATA	binding
Phage_GP20	PF06810.6	gi|257051134|ref|YP_003128967.1|	-	0.1	12.0	12.7	1.1	8.6	3.5	2.6	1	1	1	2	2	2	0	Phage	minor	structural	protein	GP20
bZIP_1	PF00170.16	gi|257051134|ref|YP_003128967.1|	-	0.13	12.2	9.7	0.077	12.9	2.4	2.6	1	1	1	2	2	2	0	bZIP	transcription	factor
Prefoldin	PF02996.12	gi|257051134|ref|YP_003128967.1|	-	0.13	11.9	9.3	1.7	8.2	2.3	3.0	1	1	2	3	3	3	0	Prefoldin	subunit
DUF4200	PF13863.1	gi|257051134|ref|YP_003128967.1|	-	0.16	11.8	15.7	2.9	7.8	10.9	2.7	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4200)
DUF972	PF06156.8	gi|257051134|ref|YP_003128967.1|	-	0.27	11.6	9.3	5.2	7.4	6.6	3.1	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF972)
TEX13	PF15186.1	gi|257051134|ref|YP_003128967.1|	-	0.42	10.1	6.6	0.91	9.0	4.6	1.6	1	0	0	1	1	1	0	Testis-expressed	sequence	13	protein	family
Seryl_tRNA_N	PF02403.17	gi|257051134|ref|YP_003128967.1|	-	0.51	10.3	12.7	2.4	8.2	8.6	2.3	1	1	0	1	1	1	0	Seryl-tRNA	synthetase	N-terminal	domain
DUF4071	PF13281.1	gi|257051134|ref|YP_003128967.1|	-	0.81	8.4	5.9	1.3	7.7	3.2	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4071)
Atg14	PF10186.4	gi|257051134|ref|YP_003128967.1|	-	0.9	8.4	16.8	0.031	13.2	7.3	1.8	2	0	0	2	2	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
DUF904	PF06005.7	gi|257051134|ref|YP_003128967.1|	-	1.6	9.0	12.5	4.8	7.5	8.7	1.9	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF904)
Syntaxin-6_N	PF09177.6	gi|257051134|ref|YP_003128967.1|	-	2.3	8.6	19.8	1.7	9.0	3.1	3.6	2	1	1	3	3	3	0	Syntaxin	6,	N-terminal
Prefoldin_2	PF01920.15	gi|257051134|ref|YP_003128967.1|	-	2.4	7.9	13.5	11	5.8	2.1	2.8	1	1	1	2	2	2	0	Prefoldin	subunit
Med9	PF07544.8	gi|257051134|ref|YP_003128967.1|	-	2.6	7.8	9.7	16	5.2	6.7	2.3	1	1	0	1	1	1	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
CENP-H	PF05837.7	gi|257051134|ref|YP_003128967.1|	-	2.7	8.2	10.0	0.64	10.2	2.6	2.8	1	1	1	2	2	2	0	Centromere	protein	H	(CENP-H)
CCDC-167	PF15188.1	gi|257051134|ref|YP_003128967.1|	-	4.3	7.3	13.2	17	5.4	9.1	2.1	1	0	0	1	1	1	0	Coiled-coil	domain-containing	protein	167
HAUS6_N	PF14661.1	gi|257051134|ref|YP_003128967.1|	-	4.6	6.5	8.0	13	5.0	5.5	1.8	1	0	0	1	1	1	0	HAUS	augmin-like	complex	subunit	6	N-terminus
DUF2730	PF10805.3	gi|257051134|ref|YP_003128967.1|	-	5	6.9	6.7	18	5.1	4.6	1.9	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2730)
Ax_dynein_light	PF10211.4	gi|257051134|ref|YP_003128967.1|	-	5.4	6.8	15.7	15	5.3	5.9	2.6	1	1	1	2	2	2	0	Axonemal	dynein	light	chain
HTH_24	PF13412.1	gi|257051135|ref|YP_003128968.1|	-	0.00027	20.2	0.0	0.00047	19.4	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_12	PF08461.5	gi|257051135|ref|YP_003128968.1|	-	0.0071	16.0	0.0	0.014	15.1	0.0	1.7	1	1	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
TrmB	PF01978.14	gi|257051135|ref|YP_003128968.1|	-	0.015	14.9	0.1	0.031	13.9	0.0	1.6	1	1	1	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
Phage_rep_org_N	PF09681.5	gi|257051135|ref|YP_003128968.1|	-	0.033	13.7	0.0	0.06	12.9	0.0	1.5	1	1	1	2	2	2	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
MotA_activ	PF09114.5	gi|257051135|ref|YP_003128968.1|	-	0.034	13.8	0.0	0.037	13.7	0.0	1.2	1	0	0	1	1	1	0	Transcription	factor	MotA,	activation	domain
Ribosomal_S19e	PF01090.14	gi|257051135|ref|YP_003128968.1|	-	0.038	13.4	0.0	0.65	9.4	0.0	1.9	1	1	1	2	2	2	0	Ribosomal	protein	S19e
HTH_20	PF12840.2	gi|257051135|ref|YP_003128968.1|	-	0.051	13.3	0.1	0.19	11.5	0.0	2.0	2	1	1	3	3	3	0	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|257051135|ref|YP_003128968.1|	-	0.086	12.5	0.2	0.22	11.2	0.1	1.7	1	1	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_15	PF12324.3	gi|257051135|ref|YP_003128968.1|	-	0.097	12.3	0.1	0.27	10.9	0.0	1.7	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	alkylmercury	lyase
SNARE	PF05739.14	gi|257051135|ref|YP_003128968.1|	-	0.13	11.9	2.1	2.4	7.9	0.1	2.3	2	0	0	2	2	2	0	SNARE	domain
Adenylsucc_synt	PF00709.16	gi|257051136|ref|YP_003128969.1|	-	1.6e-141	471.7	0.0	1.9e-141	471.5	0.0	1.0	1	0	0	1	1	1	1	Adenylosuccinate	synthetase
GFO_IDH_MocA	PF01408.17	gi|257051137|ref|YP_003128970.1|	-	3.5e-21	75.9	0.2	6.8e-21	75.0	0.1	1.4	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
F420_oxidored	PF03807.12	gi|257051137|ref|YP_003128970.1|	-	0.058	13.8	0.0	0.13	12.6	0.0	1.6	1	0	0	1	1	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
Trm112p	PF03966.11	gi|257051138|ref|YP_003128971.1|	-	3.5e-10	40.0	1.0	6.8e-10	39.1	0.7	1.5	1	1	0	1	1	1	1	Trm112p-like	protein
DUF1451	PF07295.6	gi|257051138|ref|YP_003128971.1|	-	0.036	13.8	0.0	0.04	13.6	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1451)
tRNA-synt_1e	PF01406.14	gi|257051141|ref|YP_003128974.1|	-	1.7e-105	352.4	0.0	4.3e-104	347.8	0.0	2.1	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1g	PF09334.6	gi|257051141|ref|YP_003128974.1|	-	1.3e-09	37.2	0.0	8.5e-05	21.3	0.0	2.1	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(M)
DALR_2	PF09190.6	gi|257051141|ref|YP_003128974.1|	-	2.4e-09	37.3	0.1	1.2e-08	35.0	0.0	2.1	2	0	0	2	2	2	1	DALR	domain
tRNA-synt_1f	PF01921.13	gi|257051141|ref|YP_003128974.1|	-	0.00011	20.9	0.0	0.046	12.3	0.0	2.2	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(K)
tRNA-synt_1	PF00133.17	gi|257051141|ref|YP_003128974.1|	-	0.0099	13.9	0.1	0.031	12.2	0.0	1.7	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1d	PF00750.14	gi|257051141|ref|YP_003128974.1|	-	0.012	14.5	0.1	3	6.5	0.0	2.4	2	0	0	2	2	2	0	tRNA	synthetases	class	I	(R)
UVR	PF02151.14	gi|257051141|ref|YP_003128974.1|	-	0.013	15.0	0.1	0.034	13.6	0.1	1.7	1	0	0	1	1	1	0	UvrB/uvrC	motif
tRNA-synt_1c	PF00749.16	gi|257051141|ref|YP_003128974.1|	-	0.021	13.4	0.1	0.049	12.2	0.0	1.6	2	0	0	2	2	2	0	tRNA	synthetases	class	I	(E	and	Q),	catalytic	domain
COX14	PF14880.1	gi|257051142|ref|YP_003128975.1|	-	0.84	9.3	5.0	1.8	8.2	0.8	2.1	2	0	0	2	2	2	0	Cytochrome	oxidase	c	assembly
DUF3040	PF11239.3	gi|257051142|ref|YP_003128975.1|	-	1.5	8.8	4.2	1.9	8.5	2.9	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3040)
CorA	PF01544.13	gi|257051143|ref|YP_003128976.1|	-	1.3e-74	250.9	0.0	1.4e-74	250.7	0.0	1.0	1	0	0	1	1	1	1	CorA-like	Mg2+	transporter	protein
TctA	PF01970.11	gi|257051144|ref|YP_003128977.1|	-	6.5e-64	215.8	45.4	8.3e-64	215.5	31.5	1.1	1	0	0	1	1	1	1	Tripartite	tricarboxylate	transporter	TctA	family
SOR_SNZ	PF01680.12	gi|257051145|ref|YP_003128978.1|	-	4.1e-102	340.1	6.8	5.5e-102	339.7	4.7	1.2	1	0	0	1	1	1	1	SOR/SNZ	family
ThiG	PF05690.9	gi|257051145|ref|YP_003128978.1|	-	4.5e-09	35.7	6.1	3.7e-05	22.9	0.7	2.2	2	0	0	2	2	2	2	Thiazole	biosynthesis	protein	ThiG
Dus	PF01207.12	gi|257051145|ref|YP_003128978.1|	-	0.0015	17.4	1.0	0.32	9.7	0.1	2.2	2	0	0	2	2	2	2	Dihydrouridine	synthase	(Dus)
OMPdecase	PF00215.19	gi|257051145|ref|YP_003128978.1|	-	0.0033	16.8	2.6	0.45	9.8	0.1	2.7	2	1	1	3	3	3	2	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
IGPS	PF00218.16	gi|257051145|ref|YP_003128978.1|	-	0.018	14.0	0.3	0.11	11.4	0.0	2.2	3	0	0	3	3	3	0	Indole-3-glycerol	phosphate	synthase
MS_channel	PF00924.13	gi|257051146|ref|YP_003128979.1|	-	5.7e-46	156.4	0.8	7.6e-46	156.0	0.0	1.6	2	0	0	2	2	2	1	Mechanosensitive	ion	channel
GHMP_kinases_N	PF00288.21	gi|257051147|ref|YP_003128980.1|	-	1.9e-14	53.4	1.0	4.7e-14	52.1	0.7	1.7	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.8	gi|257051147|ref|YP_003128980.1|	-	1.3e-07	31.6	0.0	3e-07	30.5	0.0	1.7	1	0	0	1	1	1	1	GHMP	kinases	C	terminal
HATPase_c	PF02518.21	gi|257051148|ref|YP_003128981.1|	-	8.5e-19	67.3	0.0	1.7e-18	66.3	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
GAF_3	PF13492.1	gi|257051148|ref|YP_003128981.1|	-	3e-06	27.3	0.1	6.9e-06	26.1	0.0	1.6	1	0	0	1	1	1	1	GAF	domain
HATPase_c_2	PF13581.1	gi|257051148|ref|YP_003128981.1|	-	6.4e-06	25.9	0.0	1.7e-05	24.6	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
PAS_8	PF13188.1	gi|257051148|ref|YP_003128981.1|	-	3.1e-05	23.6	0.0	0.00011	21.8	0.0	1.9	1	0	0	1	1	1	1	PAS	domain
PAS_4	PF08448.5	gi|257051148|ref|YP_003128981.1|	-	3.9e-05	23.6	0.7	0.00017	21.5	0.2	2.4	2	1	0	2	2	2	1	PAS	fold
PAS_9	PF13426.1	gi|257051148|ref|YP_003128981.1|	-	0.0013	19.0	0.0	0.0081	16.5	0.0	2.4	1	1	0	1	1	1	1	PAS	domain
GAF_2	PF13185.1	gi|257051148|ref|YP_003128981.1|	-	0.0014	19.1	0.7	0.01	16.3	0.1	2.7	2	1	0	2	2	2	1	GAF	domain
HisKA	PF00512.20	gi|257051148|ref|YP_003128981.1|	-	0.0023	17.8	0.4	0.0023	17.8	0.3	2.6	1	1	1	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_5	PF14501.1	gi|257051148|ref|YP_003128981.1|	-	0.007	16.0	0.0	0.013	15.1	0.0	1.4	1	0	0	1	1	1	1	GHKL	domain
PAS	PF00989.19	gi|257051148|ref|YP_003128981.1|	-	0.01	15.6	0.0	0.043	13.6	0.0	2.1	1	1	0	1	1	1	0	PAS	fold
Amino_oxidase	PF01593.19	gi|257051149|ref|YP_003128982.1|	-	2.4e-16	59.8	0.0	8.7e-14	51.4	0.0	2.5	2	1	0	2	2	2	2	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.1	gi|257051149|ref|YP_003128982.1|	-	1.1e-13	50.9	0.1	2.7e-13	49.7	0.1	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.19	gi|257051149|ref|YP_003128982.1|	-	1.8e-10	40.2	1.1	4.4e-08	32.4	0.4	2.2	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.19	gi|257051149|ref|YP_003128982.1|	-	1.4e-05	24.1	2.6	0.00066	18.6	1.1	2.1	2	0	0	2	2	2	1	FAD	binding	domain
FMO-like	PF00743.14	gi|257051149|ref|YP_003128982.1|	-	4.5e-05	21.8	0.0	6.5e-05	21.3	0.0	1.2	1	0	0	1	1	1	1	Flavin-binding	monooxygenase-like
NAD_binding_9	PF13454.1	gi|257051149|ref|YP_003128982.1|	-	9.1e-05	22.2	0.1	0.0012	18.5	0.0	2.2	2	0	0	2	2	2	1	FAD-NAD(P)-binding
Pyr_redox_2	PF07992.9	gi|257051149|ref|YP_003128982.1|	-	0.00011	22.1	0.1	0.00049	20.0	0.0	1.9	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.2	gi|257051149|ref|YP_003128982.1|	-	0.00014	21.1	0.0	0.0043	16.1	0.1	2.1	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
Pyr_redox	PF00070.22	gi|257051149|ref|YP_003128982.1|	-	0.00033	20.9	0.1	0.00089	19.6	0.1	1.8	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|257051149|ref|YP_003128982.1|	-	0.0045	17.0	0.0	0.0076	16.3	0.0	1.4	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.9	gi|257051149|ref|YP_003128982.1|	-	0.0049	15.4	0.6	0.0075	14.7	0.4	1.2	1	0	0	1	1	1	1	HI0933-like	protein
3HCDH_N	PF02737.13	gi|257051149|ref|YP_003128982.1|	-	0.0081	15.8	0.0	0.012	15.2	0.0	1.2	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_2	PF03446.10	gi|257051149|ref|YP_003128982.1|	-	0.011	15.6	0.0	0.023	14.5	0.0	1.6	1	0	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NAD_binding_10	PF13460.1	gi|257051149|ref|YP_003128982.1|	-	0.012	15.5	0.5	0.012	15.5	0.3	1.6	2	0	0	2	2	1	0	NADH(P)-binding
Thi4	PF01946.12	gi|257051149|ref|YP_003128982.1|	-	0.013	14.6	0.9	0.029	13.4	0.3	1.8	2	0	0	2	2	2	0	Thi4	family
F420_oxidored	PF03807.12	gi|257051149|ref|YP_003128982.1|	-	0.016	15.6	0.1	0.072	13.5	0.0	2.1	3	0	0	3	3	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
FAD_binding_3	PF01494.14	gi|257051149|ref|YP_003128982.1|	-	0.018	14.0	1.3	0.032	13.2	0.9	1.3	1	0	0	1	1	1	0	FAD	binding	domain
NAD_binding_7	PF13241.1	gi|257051149|ref|YP_003128982.1|	-	0.031	14.5	0.0	0.064	13.5	0.0	1.5	1	0	0	1	1	1	0	Putative	NAD(P)-binding
UDPG_MGDP_dh_N	PF03721.9	gi|257051149|ref|YP_003128982.1|	-	0.065	12.6	0.2	0.11	11.8	0.1	1.3	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
YjeF_N	PF03853.10	gi|257051149|ref|YP_003128982.1|	-	0.1	12.1	0.0	0.15	11.6	0.0	1.3	1	0	0	1	1	1	0	YjeF-related	protein	N-terminus
TrkA_N	PF02254.13	gi|257051149|ref|YP_003128982.1|	-	0.11	12.4	0.1	0.25	11.3	0.0	1.6	2	0	0	2	2	1	0	TrkA-N	domain
GIDA	PF01134.17	gi|257051149|ref|YP_003128982.1|	-	0.13	11.1	0.1	0.19	10.5	0.1	1.2	1	0	0	1	1	1	0	Glucose	inhibited	division	protein	A
GIDE	PF12483.3	gi|257051150|ref|YP_003128983.1|	-	9.7e-08	31.5	0.0	0.0071	15.7	0.0	2.3	2	0	0	2	2	2	2	E3	Ubiquitin	ligase
DUF1673	PF07895.6	gi|257051150|ref|YP_003128983.1|	-	0.042	13.3	0.1	0.09	12.2	0.0	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1673)
tRNA_anti-codon	PF01336.20	gi|257051150|ref|YP_003128983.1|	-	0.21	11.4	1.9	13	5.7	0.1	3.2	2	2	1	3	3	3	0	OB-fold	nucleic	acid	binding	domain
Bax1-I	PF01027.15	gi|257051151|ref|YP_003128984.1|	-	0.34	10.4	4.0	0.47	10.0	2.7	1.1	1	0	0	1	1	1	0	Inhibitor	of	apoptosis-promoting	Bax1
Pyr_redox_2	PF07992.9	gi|257051153|ref|YP_003128986.1|	-	2.5e-32	112.4	0.3	3e-32	112.1	0.2	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|257051153|ref|YP_003128986.1|	-	3.1e-11	43.5	0.8	5.5e-06	26.6	0.1	3.2	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|257051153|ref|YP_003128986.1|	-	3.2e-05	24.0	0.3	0.00013	22.1	0.2	2.0	1	1	1	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.1	gi|257051153|ref|YP_003128986.1|	-	0.0053	16.7	0.7	0.77	9.8	0.0	3.4	3	0	0	3	3	3	1	NAD(P)-binding	Rossmann-like	domain
HI0933_like	PF03486.9	gi|257051153|ref|YP_003128986.1|	-	0.0097	14.4	0.0	0.14	10.6	0.0	2.3	3	0	0	3	3	3	1	HI0933-like	protein
FAD_binding_2	PF00890.19	gi|257051153|ref|YP_003128986.1|	-	0.017	14.0	0.5	13	4.5	0.0	3.2	3	0	0	3	3	3	0	FAD	binding	domain
Reductase_C	PF14759.1	gi|257051153|ref|YP_003128986.1|	-	0.046	14.0	0.0	0.14	12.4	0.0	1.9	1	0	0	1	1	1	0	Reductase	C-terminal
DAO	PF01266.19	gi|257051153|ref|YP_003128986.1|	-	0.075	11.9	6.3	3.9	6.2	0.0	3.6	4	0	0	4	4	4	0	FAD	dependent	oxidoreductase
HTH_42	PF06224.7	gi|257051156|ref|YP_003128989.1|	-	0.063	12.6	0.1	0.074	12.3	0.1	1.0	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
TrmB	PF01978.14	gi|257051156|ref|YP_003128989.1|	-	0.065	12.9	0.1	0.47	10.1	0.1	2.1	1	1	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
PMT_2	PF13231.1	gi|257051157|ref|YP_003128990.1|	-	3.7e-13	49.6	3.0	3.7e-13	49.6	2.1	2.9	3	1	0	3	3	3	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
CPSase_L_D2	PF02786.12	gi|257051158|ref|YP_003128991.1|	-	6e-98	326.2	0.2	1.9e-62	210.2	0.0	2.2	2	0	0	2	2	2	2	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
CPSase_L_chain	PF00289.17	gi|257051158|ref|YP_003128991.1|	-	1.9e-44	150.2	0.3	4.9e-22	78.1	0.0	2.5	2	0	0	2	2	2	2	Carbamoyl-phosphate	synthase	L	chain,	N-terminal	domain
ATP-grasp_4	PF13535.1	gi|257051158|ref|YP_003128991.1|	-	6.5e-34	117.2	0.0	4.7e-17	62.3	0.0	2.5	2	0	0	2	2	2	2	ATP-grasp	domain
ATPgrasp_Ter	PF15632.1	gi|257051158|ref|YP_003128991.1|	-	3.6e-27	94.9	0.0	1.5e-12	46.9	0.0	3.6	3	1	0	3	3	3	3	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
CPSase_L_D3	PF02787.14	gi|257051158|ref|YP_003128991.1|	-	1.3e-19	70.1	0.1	1.8e-09	37.4	0.0	2.5	2	0	0	2	2	2	2	Carbamoyl-phosphate	synthetase	large	chain,	oligomerisation	domain
ATP-grasp	PF02222.17	gi|257051158|ref|YP_003128991.1|	-	1.5e-14	53.6	0.0	1.2e-06	27.9	0.0	2.5	2	0	0	2	2	2	2	ATP-grasp	domain
ATP-grasp_3	PF02655.9	gi|257051158|ref|YP_003128991.1|	-	9.4e-11	41.8	0.1	0.00012	21.9	0.0	2.4	2	0	0	2	2	2	2	ATP-grasp	domain
Dala_Dala_lig_C	PF07478.8	gi|257051158|ref|YP_003128991.1|	-	4.1e-10	39.3	0.0	4.4e-06	26.2	0.0	2.7	2	1	0	2	2	2	2	D-ala	D-ala	ligase	C-terminus
RimK	PF08443.6	gi|257051158|ref|YP_003128991.1|	-	1.8e-05	24.2	0.0	0.05	13.0	0.0	2.6	2	0	0	2	2	2	2	RimK-like	ATP-grasp	domain
Peptidase_M24	PF00557.19	gi|257051160|ref|YP_003128993.1|	-	2e-43	148.3	0.5	2.7e-43	147.9	0.4	1.2	1	0	0	1	1	1	1	Metallopeptidase	family	M24
OrfB_IS605	PF01385.14	gi|257051161|ref|YP_003128994.1|	-	6.5e-63	212.1	0.0	8.3e-63	211.8	0.0	1.1	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.6	gi|257051161|ref|YP_003128994.1|	-	1e-18	66.7	0.3	2.3e-18	65.6	0.2	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
HIT	PF01230.18	gi|257051163|ref|YP_003128996.1|	-	3.6e-14	53.0	0.0	9e-14	51.7	0.0	1.6	2	0	0	2	2	2	1	HIT	domain
DcpS_C	PF11969.3	gi|257051163|ref|YP_003128996.1|	-	1.9e-05	24.8	0.0	3.1e-05	24.1	0.0	1.3	1	0	0	1	1	1	1	Scavenger	mRNA	decapping	enzyme	C-term	binding
CwfJ_C_1	PF04677.10	gi|257051163|ref|YP_003128996.1|	-	0.0045	16.6	0.0	0.0081	15.8	0.0	1.4	1	0	0	1	1	1	1	Protein	similar	to	CwfJ	C-terminus	1
MAM33	PF02330.11	gi|257051164|ref|YP_003128997.1|	-	0.014	15.1	0.1	0.015	15.0	0.1	1.0	1	0	0	1	1	1	0	Mitochondrial	glycoprotein
P4Ha_N	PF08336.6	gi|257051164|ref|YP_003128997.1|	-	0.09	12.5	0.2	0.094	12.5	0.1	1.0	1	0	0	1	1	1	0	Prolyl	4-Hydroxylase	alpha-subunit,	N-terminal	region
DUF2191	PF09957.4	gi|257051164|ref|YP_003128997.1|	-	0.18	11.6	2.0	0.18	11.6	0.2	1.8	2	1	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2191)
Cation_efflux	PF01545.16	gi|257051165|ref|YP_003128998.1|	-	5.7e-54	183.1	0.4	6.4e-54	182.9	0.3	1.0	1	0	0	1	1	1	1	Cation	efflux	family
PGM_PMM_I	PF02878.11	gi|257051166|ref|YP_003128999.1|	-	2.8e-40	136.9	0.0	6.1e-40	135.9	0.0	1.5	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
PGM_PMM_II	PF02879.11	gi|257051166|ref|YP_003128999.1|	-	1.9e-24	85.9	0.1	3.7e-24	85.0	0.1	1.5	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
PGM_PMM_III	PF02880.11	gi|257051166|ref|YP_003128999.1|	-	2.9e-24	85.2	0.0	5.4e-24	84.4	0.0	1.4	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	III
PGM_PMM_IV	PF00408.15	gi|257051166|ref|YP_003128999.1|	-	2.2e-14	53.2	0.0	6.9e-14	51.6	0.0	1.9	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	C-terminal	domain
Fe_dep_repress	PF01325.14	gi|257051167|ref|YP_003129000.1|	-	1e-19	70.2	0.1	1.5e-19	69.6	0.1	1.3	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Fe_dep_repr_C	PF02742.10	gi|257051167|ref|YP_003129000.1|	-	4.9e-18	64.5	0.3	1.1e-17	63.5	0.2	1.6	1	0	0	1	1	1	1	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
MarR_2	PF12802.2	gi|257051167|ref|YP_003129000.1|	-	3.9e-08	32.8	0.8	7.2e-08	31.9	0.1	1.8	2	0	0	2	2	1	1	MarR	family
HTH_29	PF13551.1	gi|257051167|ref|YP_003129000.1|	-	1.1e-05	25.5	0.4	0.0033	17.5	0.1	2.1	1	1	1	2	2	2	1	Winged	helix-turn	helix
HTH_Crp_2	PF13545.1	gi|257051167|ref|YP_003129000.1|	-	1.6e-05	24.6	0.0	3.5e-05	23.4	0.0	1.6	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_27	PF13463.1	gi|257051167|ref|YP_003129000.1|	-	1.7e-05	25.0	0.1	3.1e-05	24.2	0.1	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_IclR	PF09339.5	gi|257051167|ref|YP_003129000.1|	-	1.9e-05	24.1	0.1	3.5e-05	23.2	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
GntR	PF00392.16	gi|257051167|ref|YP_003129000.1|	-	2.9e-05	23.4	0.1	6.8e-05	22.2	0.1	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_20	PF12840.2	gi|257051167|ref|YP_003129000.1|	-	9e-05	22.2	0.3	0.00083	19.1	0.0	2.1	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_1	PF00126.22	gi|257051167|ref|YP_003129000.1|	-	0.00012	21.7	0.4	0.00032	20.3	0.3	1.8	1	0	0	1	1	1	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
MarR	PF01047.17	gi|257051167|ref|YP_003129000.1|	-	0.00016	21.3	0.0	0.00026	20.6	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.1	gi|257051167|ref|YP_003129000.1|	-	0.00038	19.7	0.0	0.0006	19.1	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.15	gi|257051167|ref|YP_003129000.1|	-	0.00047	19.7	0.0	0.00095	18.7	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_28	PF13518.1	gi|257051167|ref|YP_003129000.1|	-	0.0016	18.3	0.0	0.0028	17.6	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
Rrf2	PF02082.15	gi|257051167|ref|YP_003129000.1|	-	0.0025	17.9	0.0	0.0037	17.3	0.0	1.3	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_23	PF13384.1	gi|257051167|ref|YP_003129000.1|	-	0.0067	16.0	0.0	0.015	14.9	0.0	1.6	1	0	0	1	1	1	1	Homeodomain-like	domain
TrmB	PF01978.14	gi|257051167|ref|YP_003129000.1|	-	0.011	15.4	0.1	0.022	14.4	0.0	1.6	2	0	0	2	2	1	0	Sugar-specific	transcriptional	regulator	TrmB
Crp	PF00325.15	gi|257051167|ref|YP_003129000.1|	-	0.011	15.1	0.0	0.02	14.3	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	crp	family
HTH_10	PF04967.7	gi|257051167|ref|YP_003129000.1|	-	0.037	13.5	0.0	0.074	12.6	0.0	1.4	1	0	0	1	1	1	0	HTH	DNA	binding	domain
TFIIE_alpha	PF02002.12	gi|257051167|ref|YP_003129000.1|	-	0.083	12.3	0.0	0.13	11.7	0.0	1.3	1	0	0	1	1	1	0	TFIIE	alpha	subunit
HTH_AsnC-type	PF13404.1	gi|257051167|ref|YP_003129000.1|	-	0.11	12.0	0.4	0.24	10.9	0.0	1.8	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
Meth_synt_1	PF08267.7	gi|257051168|ref|YP_003129001.1|	-	5e-24	85.1	0.0	3.8e-20	72.3	0.0	2.1	1	1	1	2	2	2	2	Cobalamin-independent	synthase,	N-terminal	domain
Meth_synt_2	PF01717.13	gi|257051168|ref|YP_003129001.1|	-	1.9e-12	46.7	0.0	2.3e-12	46.5	0.0	1.1	1	0	0	1	1	1	1	Cobalamin-independent	synthase,	Catalytic	domain
Meth_synt_2	PF01717.13	gi|257051169|ref|YP_003129002.1|	-	3.5e-79	266.1	0.0	4.1e-79	265.8	0.0	1.0	1	0	0	1	1	1	1	Cobalamin-independent	synthase,	Catalytic	domain
Meth_synt_1	PF08267.7	gi|257051169|ref|YP_003129002.1|	-	4.7e-22	78.6	0.2	3.8e-21	75.6	0.1	1.9	1	1	1	2	2	2	1	Cobalamin-independent	synthase,	N-terminal	domain
URO-D	PF01208.12	gi|257051169|ref|YP_003129002.1|	-	0.0028	16.6	0.0	0.006	15.5	0.0	1.6	1	1	0	1	1	1	1	Uroporphyrinogen	decarboxylase	(URO-D)
DUF3325	PF11804.3	gi|257051170|ref|YP_003129003.1|	-	0.83	9.6	5.7	2	8.3	4.0	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3325)
NUDIX	PF00293.23	gi|257051171|ref|YP_003129004.1|	-	9.4e-12	44.7	0.1	1.3e-11	44.3	0.1	1.2	1	0	0	1	1	1	1	NUDIX	domain
TFIIB	PF00382.14	gi|257051172|ref|YP_003129005.1|	-	1.5e-41	140.0	0.3	1.3e-20	72.9	0.0	2.2	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.7	gi|257051172|ref|YP_003129005.1|	-	1.3e-17	62.8	5.1	3.9e-17	61.3	3.7	1.8	2	0	0	2	2	2	1	TFIIB	zinc-binding
Cyclin_C	PF02984.14	gi|257051172|ref|YP_003129005.1|	-	0.0072	16.2	0.0	0.29	11.0	0.0	2.3	2	0	0	2	2	2	1	Cyclin,	C-terminal	domain
A2L_zn_ribbon	PF08792.5	gi|257051172|ref|YP_003129005.1|	-	0.014	14.8	1.0	0.034	13.6	0.7	1.7	1	0	0	1	1	1	0	A2L	zinc	ribbon	domain
RRN7	PF11781.3	gi|257051172|ref|YP_003129005.1|	-	0.015	14.7	2.5	0.024	14.1	1.7	1.3	1	0	0	1	1	1	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
DZR	PF12773.2	gi|257051172|ref|YP_003129005.1|	-	0.023	14.5	0.8	0.041	13.7	0.6	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-TFIIB	PF13453.1	gi|257051172|ref|YP_003129005.1|	-	0.033	13.3	0.1	0.084	12.0	0.1	1.7	1	0	0	1	1	1	0	Transcription	factor	zinc-finger
Sigma70_r4	PF04545.11	gi|257051172|ref|YP_003129005.1|	-	0.033	13.4	0.0	0.033	13.4	0.0	3.1	4	0	0	4	4	4	0	Sigma-70,	region	4
HTH_24	PF13412.1	gi|257051172|ref|YP_003129005.1|	-	0.044	13.1	0.1	0.1	11.9	0.1	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
zf-ribbon_3	PF13248.1	gi|257051172|ref|YP_003129005.1|	-	0.047	12.9	1.4	0.091	12.0	1.0	1.5	1	0	0	1	1	1	0	zinc-ribbon	domain
zf-RING_3	PF14369.1	gi|257051172|ref|YP_003129005.1|	-	0.14	12.1	0.3	0.14	12.1	0.2	1.8	1	1	1	2	2	2	0	zinc-finger
Zn-ribbon_8	PF09723.5	gi|257051172|ref|YP_003129005.1|	-	2.6	8.0	5.2	4.3	7.3	0.6	2.4	1	1	1	2	2	2	0	Zinc	ribbon	domain
Glu-tRNAGln	PF02686.10	gi|257051173|ref|YP_003129006.1|	-	2e-20	72.3	1.9	2e-20	72.3	1.3	1.5	2	0	0	2	2	2	1	Glu-tRNAGln	amidotransferase	C	subunit
Amidase	PF01425.16	gi|257051174|ref|YP_003129007.1|	-	8.9e-135	449.9	0.6	1.1e-134	449.6	0.4	1.0	1	0	0	1	1	1	1	Amidase
PKD	PF00801.15	gi|257051175|ref|YP_003129008.1|	-	0.035	13.8	0.0	0.082	12.6	0.0	1.7	1	1	0	1	1	1	0	PKD	domain
FixG_C	PF11614.3	gi|257051175|ref|YP_003129008.1|	-	0.077	13.1	0.1	0.13	12.3	0.1	1.4	1	1	0	1	1	1	0	IG-like	fold	at	C-terminal	of	FixG,	putative	oxidoreductase
TAT_signal	PF10518.4	gi|257051176|ref|YP_003129009.1|	-	0.067	13.2	0.1	0.067	13.2	0.1	1.9	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Glycos_transf_1	PF00534.15	gi|257051177|ref|YP_003129010.1|	-	6.9e-27	93.9	0.0	2.2e-25	89.0	0.0	2.1	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.1	gi|257051177|ref|YP_003129010.1|	-	4.8e-15	56.0	4.2	7.2e-14	52.2	0.7	2.3	2	0	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_transf_4	PF13439.1	gi|257051177|ref|YP_003129010.1|	-	7.3e-15	55.1	0.0	1.3e-14	54.3	0.0	1.4	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_1_4	PF13692.1	gi|257051177|ref|YP_003129010.1|	-	3.6e-12	46.5	0.1	3.6e-11	43.3	0.0	2.3	2	1	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.1	gi|257051177|ref|YP_003129010.1|	-	0.00076	19.7	0.0	0.002	18.3	0.0	1.7	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_2	PF13477.1	gi|257051177|ref|YP_003129010.1|	-	0.17	11.7	0.0	0.38	10.5	0.0	1.7	2	0	0	2	2	2	0	Glycosyl	transferase	4-like
Rpr2	PF04032.11	gi|257051178|ref|YP_003129011.1|	-	9.4e-15	54.2	0.1	1.1e-14	54.0	0.1	1.0	1	0	0	1	1	1	1	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
DUF1466	PF07326.6	gi|257051178|ref|YP_003129011.1|	-	0.0073	15.6	0.9	0.0091	15.3	0.6	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1466)
DUF4193	PF13834.1	gi|257051178|ref|YP_003129011.1|	-	0.064	13.4	0.5	0.11	12.6	0.3	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4193)
DUF1771	PF08590.5	gi|257051178|ref|YP_003129011.1|	-	0.1	12.6	3.4	0.14	12.1	2.4	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1771)
CRS1_YhbY	PF01985.16	gi|257051179|ref|YP_003129012.1|	-	4.8e-17	61.7	0.0	5.6e-17	61.5	0.0	1.0	1	0	0	1	1	1	1	CRS1	/	YhbY	(CRM)	domain
MS_channel	PF00924.13	gi|257051180|ref|YP_003129013.1|	-	2.6e-55	186.9	0.2	3.5e-55	186.5	0.1	1.2	1	0	0	1	1	1	1	Mechanosensitive	ion	channel
Lipase_GDSL_3	PF14606.1	gi|257051181|ref|YP_003129014.1|	-	1.2e-32	113.0	0.0	1.6e-32	112.7	0.0	1.1	1	0	0	1	1	1	1	GDSL-like	Lipase/Acylhydrolase	family
Lipase_GDSL_2	PF13472.1	gi|257051181|ref|YP_003129014.1|	-	1.3e-17	64.4	0.2	1.8e-17	64.0	0.1	1.2	1	0	0	1	1	1	1	GDSL-like	Lipase/Acylhydrolase	family
Lipase_GDSL	PF00657.17	gi|257051181|ref|YP_003129014.1|	-	0.00021	21.2	0.0	0.00029	20.7	0.0	1.2	1	0	0	1	1	1	1	GDSL-like	Lipase/Acylhydrolase
Acyl_transf_3	PF01757.17	gi|257051182|ref|YP_003129015.1|	-	0.29	9.9	6.4	0.32	9.7	4.4	1.0	1	0	0	1	1	1	0	Acyltransferase	family
GOLGA2L5	PF15070.1	gi|257051183|ref|YP_003129016.1|	-	0.00043	18.9	0.8	0.00043	18.9	0.5	1.1	1	0	0	1	1	1	1	Putative	golgin	subfamily	A	member	2-like	protein	5
TMCO5	PF14992.1	gi|257051183|ref|YP_003129016.1|	-	0.00044	19.4	2.7	0.00053	19.2	1.9	1.2	1	0	0	1	1	1	1	TMCO5	family
TPR_MLP1_2	PF07926.7	gi|257051183|ref|YP_003129016.1|	-	0.00055	19.6	2.5	0.00087	19.0	1.7	1.3	1	0	0	1	1	1	1	TPR/MLP1/MLP2-like	protein
RmuC	PF02646.11	gi|257051183|ref|YP_003129016.1|	-	0.0015	17.4	0.9	0.0018	17.1	0.6	1.1	1	0	0	1	1	1	1	RmuC	family
LPP	PF04728.8	gi|257051183|ref|YP_003129016.1|	-	0.0021	17.8	1.3	0.0032	17.2	0.1	1.8	1	1	1	2	2	2	1	Lipoprotein	leucine-zipper
DUF948	PF06103.6	gi|257051183|ref|YP_003129016.1|	-	0.0025	17.6	1.3	0.0034	17.1	0.9	1.3	1	0	0	1	1	1	1	Bacterial	protein	of	unknown	function	(DUF948)
AAA_27	PF13514.1	gi|257051183|ref|YP_003129016.1|	-	0.0027	15.5	4.1	0.0028	15.4	2.8	1.0	1	0	0	1	1	1	1	AAA	domain
Reo_sigmaC	PF04582.7	gi|257051183|ref|YP_003129016.1|	-	0.0029	16.8	0.6	0.0029	16.8	0.4	1.1	1	0	0	1	1	1	1	Reovirus	sigma	C	capsid	protein
Med9	PF07544.8	gi|257051183|ref|YP_003129016.1|	-	0.0048	16.5	0.4	0.0077	15.9	0.3	1.3	1	0	0	1	1	1	1	RNA	polymerase	II	transcription	mediator	complex	subunit	9
Spc7	PF08317.6	gi|257051183|ref|YP_003129016.1|	-	0.0051	15.5	2.2	0.0054	15.4	1.5	1.1	1	0	0	1	1	1	1	Spc7	kinetochore	protein
ATG16	PF08614.6	gi|257051183|ref|YP_003129016.1|	-	0.0052	16.6	0.9	0.0056	16.5	0.6	1.2	1	0	0	1	1	1	1	Autophagy	protein	16	(ATG16)
Atg14	PF10186.4	gi|257051183|ref|YP_003129016.1|	-	0.0058	15.6	0.6	0.0065	15.4	0.4	1.1	1	0	0	1	1	1	1	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
IncA	PF04156.9	gi|257051183|ref|YP_003129016.1|	-	0.0063	16.1	2.4	0.008	15.7	1.7	1.1	1	0	0	1	1	1	1	IncA	protein
Flu_NS2	PF00601.14	gi|257051183|ref|YP_003129016.1|	-	0.0079	16.3	0.2	0.011	15.8	0.1	1.3	1	1	0	1	1	1	1	Influenza	non-structural	protein	(NS2)
CENP-F_leu_zip	PF10473.4	gi|257051183|ref|YP_003129016.1|	-	0.0091	15.8	4.2	0.012	15.5	2.9	1.1	1	0	0	1	1	1	1	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
BLOC1_2	PF10046.4	gi|257051183|ref|YP_003129016.1|	-	0.0097	16.0	1.6	0.015	15.4	1.1	1.3	1	0	0	1	1	1	1	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Laminin_I	PF06008.9	gi|257051183|ref|YP_003129016.1|	-	0.01	15.1	2.0	0.012	14.9	1.4	1.1	1	0	0	1	1	1	0	Laminin	Domain	I
DivIVA	PF05103.8	gi|257051183|ref|YP_003129016.1|	-	0.012	15.6	8.6	0.016	15.2	6.0	1.0	1	0	0	1	1	1	0	DivIVA	protein
DUF2802	PF10975.3	gi|257051183|ref|YP_003129016.1|	-	0.013	15.2	4.1	0.02	14.6	1.8	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2802)
Filament	PF00038.16	gi|257051183|ref|YP_003129016.1|	-	0.015	14.8	2.3	0.016	14.7	1.6	1.1	1	0	0	1	1	1	0	Intermediate	filament	protein
MAP65_ASE1	PF03999.7	gi|257051183|ref|YP_003129016.1|	-	0.015	13.9	0.3	0.016	13.8	0.2	1.0	1	0	0	1	1	1	0	Microtubule	associated	protein	(MAP65/ASE1	family)
TBPIP	PF07106.8	gi|257051183|ref|YP_003129016.1|	-	0.016	14.7	1.3	0.018	14.6	0.9	1.2	1	0	0	1	1	1	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
Ax_dynein_light	PF10211.4	gi|257051183|ref|YP_003129016.1|	-	0.016	15.0	0.9	0.018	14.8	0.6	1.2	1	0	0	1	1	1	0	Axonemal	dynein	light	chain
Med4	PF10018.4	gi|257051183|ref|YP_003129016.1|	-	0.018	14.4	1.9	0.021	14.2	1.3	1.3	1	0	0	1	1	1	0	Vitamin-D-receptor	interacting	Mediator	subunit	4
Cortex-I_coil	PF09304.5	gi|257051183|ref|YP_003129016.1|	-	0.021	14.8	4.3	0.024	14.6	3.0	1.1	1	0	0	1	1	1	0	Cortexillin	I,	coiled	coil
DUF972	PF06156.8	gi|257051183|ref|YP_003129016.1|	-	0.031	14.6	2.7	0.045	14.0	1.9	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF972)
DASH_Spc34	PF08657.5	gi|257051183|ref|YP_003129016.1|	-	0.031	13.9	3.3	0.04	13.5	2.3	1.2	1	0	0	1	1	1	0	DASH	complex	subunit	Spc34
Rab5-bind	PF09311.6	gi|257051183|ref|YP_003129016.1|	-	0.033	14.0	3.5	0.037	13.9	2.4	1.1	1	0	0	1	1	1	0	Rabaptin-like	protein
TMF_TATA_bd	PF12325.3	gi|257051183|ref|YP_003129016.1|	-	0.04	13.6	3.3	0.054	13.2	2.3	1.2	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	TATA	binding
RTBV_P46	PF06216.6	gi|257051183|ref|YP_003129016.1|	-	0.041	12.7	0.2	0.043	12.6	0.1	1.0	1	0	0	1	1	1	0	Rice	tungro	bacilliform	virus	P46	protein
Syntaxin-6_N	PF09177.6	gi|257051183|ref|YP_003129016.1|	-	0.043	14.2	0.8	0.053	13.9	0.6	1.2	1	0	0	1	1	1	0	Syntaxin	6,	N-terminal
AAA_13	PF13166.1	gi|257051183|ref|YP_003129016.1|	-	0.044	12.2	1.2	0.043	12.2	0.9	1.1	1	0	0	1	1	1	0	AAA	domain
DegS	PF05384.6	gi|257051183|ref|YP_003129016.1|	-	0.045	12.9	1.6	0.054	12.7	1.1	1.2	1	0	0	1	1	1	0	Sensor	protein	DegS
COG2	PF06148.6	gi|257051183|ref|YP_003129016.1|	-	0.049	13.4	1.1	0.06	13.2	0.8	1.2	1	0	0	1	1	1	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
DUF4618	PF15397.1	gi|257051183|ref|YP_003129016.1|	-	0.049	12.9	0.7	0.056	12.7	0.5	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4618)
Bacillus_HBL	PF05791.6	gi|257051183|ref|YP_003129016.1|	-	0.05	12.9	0.4	0.058	12.7	0.3	1.2	1	0	0	1	1	1	0	Bacillus	haemolytic	enterotoxin	(HBL)
Mnd1	PF03962.10	gi|257051183|ref|YP_003129016.1|	-	0.058	13.0	1.7	0.065	12.8	1.2	1.2	1	0	0	1	1	1	0	Mnd1	family
NPV_P10	PF05531.7	gi|257051183|ref|YP_003129016.1|	-	0.07	13.3	2.0	0.11	12.7	1.4	1.4	1	0	0	1	1	1	0	Nucleopolyhedrovirus	P10	protein
DUF2730	PF10805.3	gi|257051183|ref|YP_003129016.1|	-	0.073	12.8	0.6	0.097	12.4	0.4	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2730)
DUF1664	PF07889.7	gi|257051183|ref|YP_003129016.1|	-	0.075	12.8	1.3	0.092	12.5	0.9	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
FlaC_arch	PF05377.6	gi|257051183|ref|YP_003129016.1|	-	0.078	12.8	1.4	0.13	12.1	0.9	1.6	1	1	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
DUF3373	PF11853.3	gi|257051183|ref|YP_003129016.1|	-	0.079	11.4	1.8	0.075	11.5	1.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3373)
V_ATPase_I	PF01496.14	gi|257051183|ref|YP_003129016.1|	-	0.085	10.6	1.1	0.093	10.5	0.8	1.0	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
Prefoldin	PF02996.12	gi|257051183|ref|YP_003129016.1|	-	0.11	12.1	3.0	0.16	11.6	2.1	1.4	1	0	0	1	1	1	0	Prefoldin	subunit
Seryl_tRNA_N	PF02403.17	gi|257051183|ref|YP_003129016.1|	-	0.12	12.4	3.0	0.18	11.8	1.5	1.5	1	1	0	1	1	1	0	Seryl-tRNA	synthetase	N-terminal	domain
Prominin	PF05478.6	gi|257051183|ref|YP_003129016.1|	-	0.12	9.9	0.5	0.13	9.7	0.3	1.1	1	0	0	1	1	1	0	Prominin
TMF_DNA_bd	PF12329.3	gi|257051183|ref|YP_003129016.1|	-	0.14	11.9	4.2	0.26	11.1	2.9	1.5	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	DNA	binding
Snapin_Pallidin	PF14712.1	gi|257051183|ref|YP_003129016.1|	-	0.16	12.2	2.4	0.24	11.7	1.5	1.4	1	1	0	1	1	1	0	Snapin/Pallidin
Laminin_II	PF06009.7	gi|257051183|ref|YP_003129016.1|	-	0.17	11.6	2.7	0.41	10.3	1.9	1.7	1	1	0	1	1	1	0	Laminin	Domain	II
FlxA	PF14282.1	gi|257051183|ref|YP_003129016.1|	-	0.21	11.5	4.3	0.31	11.0	3.0	1.4	1	1	0	1	1	1	0	FlxA-like	protein
APG6	PF04111.7	gi|257051183|ref|YP_003129016.1|	-	0.29	10.1	3.7	0.32	10.0	2.6	1.1	1	0	0	1	1	1	0	Autophagy	protein	Apg6
HrpB7	PF09486.5	gi|257051183|ref|YP_003129016.1|	-	0.33	10.8	7.8	0.85	9.5	5.4	1.6	1	1	0	1	1	1	0	Bacterial	type	III	secretion	protein	(HrpB7)
Spc24	PF08286.6	gi|257051183|ref|YP_003129016.1|	-	0.33	10.6	4.7	0.52	10.0	3.2	1.5	1	1	0	1	1	1	0	Spc24	subunit	of	Ndc80
DUF1993	PF09351.5	gi|257051183|ref|YP_003129016.1|	-	0.44	10.4	2.0	0.58	10.0	1.4	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1993)
IFT57	PF10498.4	gi|257051183|ref|YP_003129016.1|	-	0.78	8.4	5.6	0.16	10.6	1.7	1.4	1	1	1	2	2	2	0	Intra-flagellar	transport	protein	57
SlyX	PF04102.7	gi|257051183|ref|YP_003129016.1|	-	2.4	8.5	5.5	11	6.4	0.6	2.3	1	1	1	2	2	2	0	SlyX
Metal_resist	PF13801.1	gi|257051183|ref|YP_003129016.1|	-	2.6	8.0	5.8	3.2	7.7	1.6	1.9	1	1	1	2	2	2	0	Heavy-metal	resistance
CoA_binding_2	PF13380.1	gi|257051184|ref|YP_003129017.1|	-	2e-33	115.0	0.0	2.4e-33	114.7	0.0	1.1	1	0	0	1	1	1	1	CoA	binding	domain
DUF3782	PF12644.2	gi|257051185|ref|YP_003129018.1|	-	0.04	13.6	0.3	0.046	13.5	0.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3782)
Docking	PF08990.6	gi|257051185|ref|YP_003129018.1|	-	1.2	8.4	3.9	0.7	9.1	0.8	1.9	2	0	0	2	2	2	0	Erythronolide	synthase	docking
PadR	PF03551.9	gi|257051188|ref|YP_003129021.1|	-	4e-11	42.5	0.8	6.6e-11	41.8	0.5	1.4	1	1	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_5	PF01022.15	gi|257051188|ref|YP_003129021.1|	-	1.7e-09	37.1	0.0	2.5e-09	36.6	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.2	gi|257051188|ref|YP_003129021.1|	-	1.6e-06	27.8	0.0	2.5e-06	27.2	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.14	gi|257051188|ref|YP_003129021.1|	-	6.9e-06	25.6	0.1	9.5e-06	25.2	0.1	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.1	gi|257051188|ref|YP_003129021.1|	-	1.4e-05	24.4	0.1	0.00014	21.1	0.0	2.4	2	1	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.7	gi|257051188|ref|YP_003129021.1|	-	0.00031	20.3	0.1	0.00054	19.5	0.0	1.4	2	0	0	2	2	2	1	HTH	domain
HTH_45	PF14947.1	gi|257051188|ref|YP_003129021.1|	-	0.00038	20.1	0.3	0.00046	19.9	0.2	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
MarR_2	PF12802.2	gi|257051188|ref|YP_003129021.1|	-	0.0011	18.6	0.0	0.0052	16.4	0.0	1.8	2	0	0	2	2	2	1	MarR	family
HTH_34	PF13601.1	gi|257051188|ref|YP_003129021.1|	-	0.0011	18.9	0.0	0.0013	18.7	0.0	1.1	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
DUF4364	PF14277.1	gi|257051188|ref|YP_003129021.1|	-	0.0013	18.3	0.0	0.0016	18.0	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
HTH_41	PF14502.1	gi|257051188|ref|YP_003129021.1|	-	0.0036	16.8	0.0	0.0055	16.3	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HxlR	PF01638.12	gi|257051188|ref|YP_003129021.1|	-	0.0038	16.8	0.1	0.0049	16.4	0.0	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
MarR	PF01047.17	gi|257051188|ref|YP_003129021.1|	-	0.026	14.2	0.0	0.035	13.8	0.0	1.3	1	0	0	1	1	1	0	MarR	family
Replic_Relax	PF13814.1	gi|257051188|ref|YP_003129021.1|	-	0.033	14.0	0.0	0.039	13.7	0.0	1.1	1	0	0	1	1	1	0	Replication-relaxation
Rrf2	PF02082.15	gi|257051188|ref|YP_003129021.1|	-	0.054	13.6	0.0	0.1	12.7	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	regulator
FUR	PF01475.14	gi|257051188|ref|YP_003129021.1|	-	0.065	13.1	0.1	0.098	12.5	0.1	1.4	1	1	0	1	1	1	0	Ferric	uptake	regulator	family
DUF2334	PF10096.4	gi|257051188|ref|YP_003129021.1|	-	0.079	12.3	0.0	0.09	12.1	0.0	1.1	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2334)
DUF45	PF01863.12	gi|257051189|ref|YP_003129022.1|	-	1.1e-59	201.7	0.1	1.3e-59	201.4	0.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF45
WLM	PF08325.5	gi|257051189|ref|YP_003129022.1|	-	0.0006	19.7	0.7	0.0011	18.8	0.5	1.4	1	0	0	1	1	1	1	WLM	domain
SprT-like	PF10263.4	gi|257051189|ref|YP_003129022.1|	-	0.002	17.8	0.4	0.0031	17.1	0.2	1.3	1	0	0	1	1	1	1	SprT-like	family
HSDR_N	PF04313.9	gi|257051190|ref|YP_003129023.1|	-	1.3e-30	106.6	0.0	3.5e-30	105.1	0.0	1.8	1	0	0	1	1	1	1	Type	I	restriction	enzyme	R	protein	N	terminus	(HSDR_N)
ResIII	PF04851.10	gi|257051190|ref|YP_003129023.1|	-	5.8e-19	68.6	0.0	1.2e-18	67.5	0.0	1.6	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.24	gi|257051190|ref|YP_003129023.1|	-	0.00072	19.0	0.0	0.0033	16.9	0.0	2.0	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
AAA_10	PF12846.2	gi|257051190|ref|YP_003129023.1|	-	0.0069	15.8	0.7	2.8	7.2	0.0	3.3	2	1	1	3	3	3	2	AAA-like	domain
Helicase_C	PF00271.26	gi|257051190|ref|YP_003129023.1|	-	0.036	13.9	0.0	0.22	11.4	0.0	2.3	2	0	0	2	2	2	0	Helicase	conserved	C-terminal	domain
Methylase_S	PF01420.14	gi|257051191|ref|YP_003129024.1|	-	5.4e-31	107.8	0.0	1.8e-19	70.3	0.0	2.1	2	0	0	2	2	2	2	Type	I	restriction	modification	DNA	specificity	domain
N6_Mtase	PF02384.11	gi|257051192|ref|YP_003129025.1|	-	6e-84	281.7	0.0	7.8e-84	281.3	0.0	1.1	1	0	0	1	1	1	1	N-6	DNA	Methylase
HsdM_N	PF12161.3	gi|257051192|ref|YP_003129025.1|	-	2.5e-24	86.2	0.1	2.5e-24	86.2	0.1	2.4	2	1	1	3	3	3	1	HsdM	N-terminal	domain
Methyltransf_26	PF13659.1	gi|257051192|ref|YP_003129025.1|	-	1.7e-11	44.1	0.0	3.9e-11	43.0	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
UPF0020	PF01170.13	gi|257051192|ref|YP_003129025.1|	-	7e-11	42.0	0.0	1.2e-10	41.2	0.0	1.3	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
HTH_23	PF13384.1	gi|257051193|ref|YP_003129026.1|	-	9.5e-06	25.1	0.3	2.4e-05	23.7	0.0	1.8	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_11	PF08279.7	gi|257051193|ref|YP_003129026.1|	-	0.00035	20.1	0.0	0.001	18.6	0.0	1.7	1	0	0	1	1	1	1	HTH	domain
HTH_17	PF12728.2	gi|257051193|ref|YP_003129026.1|	-	0.00058	20.0	0.1	0.0011	19.1	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_28	PF13518.1	gi|257051193|ref|YP_003129026.1|	-	0.0015	18.5	0.1	0.0031	17.4	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
Terminase_5	PF06056.7	gi|257051193|ref|YP_003129026.1|	-	0.0024	17.3	1.1	0.08	12.5	0.0	2.5	2	0	0	2	2	2	1	Putative	ATPase	subunit	of	terminase	(gpP-like)
HTH_Tnp_1	PF01527.15	gi|257051193|ref|YP_003129026.1|	-	0.0071	16.2	0.2	0.014	15.3	0.1	1.4	1	0	0	1	1	1	1	Transposase
HTH_7	PF02796.10	gi|257051193|ref|YP_003129026.1|	-	0.0082	15.9	0.0	0.021	14.6	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
HTH_22	PF13309.1	gi|257051193|ref|YP_003129026.1|	-	0.013	15.2	0.0	0.036	13.8	0.0	1.8	1	0	0	1	1	1	0	HTH	domain
HTH_29	PF13551.1	gi|257051193|ref|YP_003129026.1|	-	0.017	15.2	0.2	0.051	13.7	0.0	1.9	1	1	1	2	2	2	0	Winged	helix-turn	helix
DUF3791	PF12668.2	gi|257051193|ref|YP_003129026.1|	-	0.02	14.5	0.0	0.053	13.1	0.0	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3791)
Sigma70_r3	PF04539.11	gi|257051193|ref|YP_003129026.1|	-	0.028	14.2	0.0	0.1	12.5	0.0	1.9	1	0	0	1	1	1	0	Sigma-70	region	3
HTH_3	PF01381.17	gi|257051193|ref|YP_003129026.1|	-	0.033	14.0	0.1	0.092	12.5	0.0	1.8	1	0	0	1	1	1	0	Helix-turn-helix
Ribosomal_S13	PF00416.17	gi|257051193|ref|YP_003129026.1|	-	0.045	14.2	0.0	0.076	13.4	0.0	1.3	1	0	0	1	1	1	0	Ribosomal	protein	S13/S18
HTH_32	PF13565.1	gi|257051193|ref|YP_003129026.1|	-	0.046	14.5	0.1	0.17	12.7	0.0	2.0	2	0	0	2	2	1	0	Homeodomain-like	domain
Sigma70_r4_2	PF08281.7	gi|257051193|ref|YP_003129026.1|	-	0.055	12.9	0.9	0.16	11.4	0.0	2.0	2	0	0	2	2	2	0	Sigma-70,	region	4
TetR_N	PF00440.18	gi|257051193|ref|YP_003129026.1|	-	0.084	12.5	0.0	0.2	11.3	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	tetR	family
UPF0122	PF04297.9	gi|257051193|ref|YP_003129026.1|	-	0.12	12.3	0.2	0.44	10.5	0.2	1.9	1	1	0	1	1	1	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
Prim-Pol	PF09250.6	gi|257051194|ref|YP_003129027.1|	-	7.6e-06	25.9	0.1	1.4e-05	25.1	0.0	1.5	1	0	0	1	1	1	1	Bifunctional	DNA	primase/polymerase,	N-terminal
PhnA_Zn_Ribbon	PF08274.7	gi|257051197|ref|YP_003129030.1|	-	0.0012	18.6	4.8	0.0079	15.9	0.6	2.1	2	0	0	2	2	2	1	PhnA	Zinc-Ribbon
DUF2387	PF09526.5	gi|257051197|ref|YP_003129030.1|	-	0.0019	18.0	1.8	0.0022	17.8	1.3	1.1	1	0	0	1	1	1	1	Probable	metal-binding	protein	(DUF2387)
Zn-ribbon_8	PF09723.5	gi|257051197|ref|YP_003129030.1|	-	0.0028	17.5	3.7	0.35	10.8	0.4	2.2	2	0	0	2	2	2	2	Zinc	ribbon	domain
Opy2	PF09463.5	gi|257051197|ref|YP_003129030.1|	-	0.0049	16.9	1.1	0.16	12.1	0.1	2.1	2	0	0	2	2	2	1	Opy2	protein
zf-ZPR1	PF03367.8	gi|257051197|ref|YP_003129030.1|	-	0.005	16.0	0.5	0.0055	15.8	0.3	1.1	1	0	0	1	1	1	1	ZPR1	zinc-finger	domain
Zn_Tnp_IS1595	PF12760.2	gi|257051197|ref|YP_003129030.1|	-	0.0055	16.4	1.9	0.0066	16.2	1.3	1.1	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
TFIIS_C	PF01096.13	gi|257051197|ref|YP_003129030.1|	-	0.0063	16.1	5.1	0.068	12.8	3.5	2.0	1	1	0	1	1	1	1	Transcription	factor	S-II	(TFIIS)
Lar_restr_allev	PF14354.1	gi|257051197|ref|YP_003129030.1|	-	0.013	15.8	2.0	0.024	14.9	1.4	1.5	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
FdhE	PF04216.7	gi|257051197|ref|YP_003129030.1|	-	0.017	14.8	0.5	0.019	14.7	0.3	1.0	1	0	0	1	1	1	0	Protein	involved	in	formate	dehydrogenase	formation
Elf1	PF05129.8	gi|257051197|ref|YP_003129030.1|	-	0.03	14.0	1.9	0.15	11.7	1.3	1.8	1	1	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
UPF0547	PF10571.4	gi|257051197|ref|YP_003129030.1|	-	0.039	13.6	6.0	0.63	9.7	0.4	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
DnaJ_CXXCXGXG	PF00684.14	gi|257051197|ref|YP_003129030.1|	-	0.04	13.9	0.3	0.046	13.7	0.2	1.1	1	0	0	1	1	1	0	DnaJ	central	domain
zinc_ribbon_5	PF13719.1	gi|257051197|ref|YP_003129030.1|	-	0.045	13.3	1.9	0.92	9.1	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|257051197|ref|YP_003129030.1|	-	0.083	12.5	2.6	1.1	9.0	0.2	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-IS66	PF13005.2	gi|257051197|ref|YP_003129030.1|	-	0.11	12.4	3.3	0.53	10.3	0.1	2.2	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
OrfB_Zn_ribbon	PF07282.6	gi|257051197|ref|YP_003129030.1|	-	0.15	11.6	4.5	0.34	10.5	3.1	1.5	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
ZZ	PF00569.12	gi|257051197|ref|YP_003129030.1|	-	0.16	11.5	2.8	0.17	11.4	0.1	1.9	2	0	0	2	2	2	0	Zinc	finger,	ZZ	type
DUF983	PF06170.7	gi|257051197|ref|YP_003129030.1|	-	0.16	12.0	0.8	2.7	8.1	0.1	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF983)
Rsm1	PF08600.5	gi|257051197|ref|YP_003129030.1|	-	0.16	11.8	0.7	0.3	10.9	0.5	1.5	1	1	0	1	1	1	0	Rsm1-like
DZR	PF12773.2	gi|257051197|ref|YP_003129030.1|	-	0.17	11.7	3.5	0.82	9.5	2.4	1.9	1	1	0	1	1	1	0	Double	zinc	ribbon
DUF4379	PF14311.1	gi|257051197|ref|YP_003129030.1|	-	0.17	11.7	1.1	0.17	11.7	0.7	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4379)
Terminase_GpA	PF05876.7	gi|257051197|ref|YP_003129030.1|	-	0.22	9.8	3.0	0.21	9.8	2.1	1.0	1	0	0	1	1	1	0	Phage	terminase	large	subunit	(GpA)
zf-Dof	PF02701.10	gi|257051197|ref|YP_003129030.1|	-	0.24	11.3	1.5	0.39	10.6	1.1	1.3	1	1	0	1	1	1	0	Dof	domain,	zinc	finger
zf-HIT	PF04438.11	gi|257051197|ref|YP_003129030.1|	-	0.28	10.8	3.0	3.6	7.3	0.1	2.1	2	0	0	2	2	2	0	HIT	zinc	finger
zf-FPG_IleRS	PF06827.9	gi|257051197|ref|YP_003129030.1|	-	0.29	10.8	3.6	5.6	6.7	0.1	2.3	2	0	0	2	2	2	0	Zinc	finger	found	in	FPG	and	IleRS
Ribosomal_S27	PF01599.14	gi|257051197|ref|YP_003129030.1|	-	0.42	10.4	3.6	2.3	8.1	0.2	2.1	1	1	1	2	2	2	0	Ribosomal	protein	S27a
HypA	PF01155.14	gi|257051197|ref|YP_003129030.1|	-	0.68	9.6	2.7	38	3.9	0.1	1.8	1	1	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
TF_Zn_Ribbon	PF08271.7	gi|257051197|ref|YP_003129030.1|	-	1.1	8.6	4.1	17	4.8	2.9	2.1	1	1	0	1	1	1	0	TFIIB	zinc-binding
Zn_Tnp_IS1	PF03811.8	gi|257051197|ref|YP_003129030.1|	-	1.1	8.8	4.7	4.1	6.9	3.3	1.9	1	1	0	1	1	1	0	InsA	N-terminal	domain
zf-RING_5	PF14634.1	gi|257051197|ref|YP_003129030.1|	-	2.6	7.8	5.1	40	4.0	3.6	2.1	1	1	1	2	2	2	0	zinc-RING	finger	domain
Phage_integrase	PF00589.17	gi|257051199|ref|YP_003129032.1|	-	7e-15	55.1	0.0	4.6e-14	52.4	0.0	2.0	1	1	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_1	PF02899.12	gi|257051199|ref|YP_003129032.1|	-	9.3e-05	22.5	0.1	0.00032	20.7	0.0	1.9	2	0	0	2	2	2	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_4	PF13495.1	gi|257051199|ref|YP_003129032.1|	-	0.0012	19.0	0.0	0.0024	18.1	0.0	1.5	1	0	0	1	1	1	1	Phage	integrase,	N-terminal	SAM-like	domain
TctB	PF07331.6	gi|257051200|ref|YP_003129033.1|	-	0.028	14.0	0.0	0.028	14.0	0.0	1.1	1	0	0	1	1	1	0	Tripartite	tricarboxylate	transporter	TctB	family
DUF3317	PF11779.3	gi|257051201|ref|YP_003129034.1|	-	0.89	9.0	4.0	0.76	9.2	2.0	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3317)
VIT1	PF01988.14	gi|257051201|ref|YP_003129034.1|	-	1.5	8.2	9.4	1.5	8.2	6.5	1.1	1	0	0	1	1	1	0	VIT	family
Oxidored_q3	PF00499.15	gi|257051201|ref|YP_003129034.1|	-	4.5	7.0	12.4	5.4	6.7	8.6	1.1	1	0	0	1	1	1	0	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	6
DUF1418	PF07214.7	gi|257051201|ref|YP_003129034.1|	-	8	6.1	7.9	8.9	6.0	5.5	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1418)
MFS_1	PF07690.11	gi|257051202|ref|YP_003129035.1|	-	0.11	11.1	56.2	0.0066	15.2	19.7	2.4	1	1	1	2	2	2	0	Major	Facilitator	Superfamily
Bactofilin	PF04519.8	gi|257051203|ref|YP_003129036.1|	-	0.00046	20.1	4.0	0.00093	19.1	2.8	1.5	1	0	0	1	1	1	1	Polymer-forming	cytoskeletal
DUF2071	PF09844.4	gi|257051204|ref|YP_003129037.1|	-	2.3e-64	216.7	0.1	2.6e-64	216.5	0.1	1.0	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(COG2071)
ADC	PF06314.6	gi|257051204|ref|YP_003129037.1|	-	7.1e-10	38.6	0.1	9e-10	38.2	0.0	1.1	1	0	0	1	1	1	1	Acetoacetate	decarboxylase	(ADC)
DUF2835	PF11197.3	gi|257051204|ref|YP_003129037.1|	-	0.13	12.0	0.0	0.44	10.3	0.0	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2835)
DUF998	PF06197.8	gi|257051205|ref|YP_003129038.1|	-	1.3e-23	83.2	24.6	1.7e-23	82.9	17.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF998)
TraT	PF05818.7	gi|257051206|ref|YP_003129039.1|	-	0.3	10.4	2.2	0.37	10.1	1.5	1.2	1	0	0	1	1	1	0	Enterobacterial	TraT	complement	resistance	protein
MFS_1_like	PF12832.2	gi|257051206|ref|YP_003129039.1|	-	0.55	10.0	4.2	0.22	11.3	1.1	1.8	2	1	0	2	2	2	0	MFS_1	like	family
DUF4191	PF13829.1	gi|257051206|ref|YP_003129039.1|	-	0.77	8.8	12.9	0.57	9.2	2.1	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4191)
SpoIIIAC	PF06686.6	gi|257051206|ref|YP_003129039.1|	-	1	9.2	12.0	1.1	9.0	4.4	2.4	2	0	0	2	2	2	0	Stage	III	sporulation	protein	AC/AD	protein	family
7TM-7TMR_HD	PF07698.6	gi|257051206|ref|YP_003129039.1|	-	7.8	5.8	14.2	19	4.6	9.9	1.5	1	1	0	1	1	1	0	7TM	receptor	with	intracellular	HD	hydrolase
DUF457	PF04307.9	gi|257051207|ref|YP_003129040.1|	-	4.2e-11	42.4	11.4	9.6e-11	41.2	7.9	1.6	1	1	0	1	1	1	1	Predicted	membrane-bound	metal-dependent	hydrolase	(DUF457)
Zn_dep_PLPC	PF00882.13	gi|257051207|ref|YP_003129040.1|	-	0.013	15.1	0.1	0.018	14.7	0.1	1.2	1	0	0	1	1	1	0	Zinc	dependent	phospholipase	C
ABC_tran	PF00005.22	gi|257051210|ref|YP_003129043.1|	-	2.4e-29	102.3	0.0	3.4e-29	101.9	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|257051210|ref|YP_003129043.1|	-	3.6e-15	56.6	0.0	5.2e-10	39.7	0.0	2.1	1	1	1	2	2	2	2	AAA	domain
AAA_13	PF13166.1	gi|257051210|ref|YP_003129043.1|	-	0.0042	15.6	0.0	0.38	9.1	0.1	2.0	2	0	0	2	2	2	1	AAA	domain
AAA_23	PF13476.1	gi|257051210|ref|YP_003129043.1|	-	0.0086	16.4	0.0	0.013	15.8	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|257051210|ref|YP_003129043.1|	-	0.0093	15.4	0.1	0.017	14.6	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_17	PF13207.1	gi|257051210|ref|YP_003129043.1|	-	0.016	15.9	0.0	0.028	15.2	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
SMC_N	PF02463.14	gi|257051210|ref|YP_003129043.1|	-	0.04	13.1	0.0	4.9	6.3	0.0	2.1	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.1	gi|257051210|ref|YP_003129043.1|	-	0.057	13.4	0.2	0.31	11.0	0.1	2.1	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA	PF00004.24	gi|257051210|ref|YP_003129043.1|	-	0.061	13.5	0.0	0.32	11.1	0.0	2.1	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
MMR_HSR1	PF01926.18	gi|257051210|ref|YP_003129043.1|	-	0.11	12.4	0.0	0.28	11.1	0.0	1.7	1	1	1	2	2	2	0	50S	ribosome-binding	GTPase
MobB	PF03205.9	gi|257051210|ref|YP_003129043.1|	-	0.13	12.0	0.1	0.34	10.5	0.1	1.7	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_10	PF12846.2	gi|257051210|ref|YP_003129043.1|	-	0.13	11.7	0.0	0.28	10.5	0.0	1.5	1	0	0	1	1	1	0	AAA-like	domain
SRP54	PF00448.17	gi|257051210|ref|YP_003129043.1|	-	0.13	11.6	0.2	0.23	10.8	0.2	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_22	PF13401.1	gi|257051210|ref|YP_003129043.1|	-	0.14	12.3	0.2	0.27	11.3	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_15	PF13175.1	gi|257051210|ref|YP_003129043.1|	-	0.15	11.0	0.0	0.56	9.1	0.0	1.7	2	0	0	2	2	2	0	AAA	ATPase	domain
G-alpha	PF00503.15	gi|257051210|ref|YP_003129043.1|	-	0.23	10.1	0.0	0.33	9.5	0.0	1.1	1	0	0	1	1	1	0	G-protein	alpha	subunit
Tetraspannin	PF00335.15	gi|257051211|ref|YP_003129044.1|	-	0.16	11.2	0.1	0.25	10.5	0.1	1.3	1	0	0	1	1	1	0	Tetraspanin	family
SdpI	PF13630.1	gi|257051212|ref|YP_003129045.1|	-	3.7e-16	58.5	1.1	3.7e-16	58.5	0.7	3.3	3	1	0	3	3	3	1	SdpI/YhfL	protein	family
DUF1648	PF07853.6	gi|257051212|ref|YP_003129045.1|	-	5.4e-16	57.8	0.2	5.4e-16	57.8	0.1	3.2	3	0	0	3	3	3	1	Protein	of	unknown	function	(DUF1648)
DUF3329	PF11808.3	gi|257051212|ref|YP_003129045.1|	-	0.17	11.9	5.6	0.57	10.3	0.3	2.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3329)
Oxidored_q1_N	PF00662.15	gi|257051212|ref|YP_003129045.1|	-	0.28	10.7	2.7	0.48	10.0	0.1	2.3	2	0	0	2	2	2	0	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
Bacillus_HBL	PF05791.6	gi|257051213|ref|YP_003129046.1|	-	0.026	13.8	0.2	0.035	13.4	0.1	1.3	1	0	0	1	1	1	0	Bacillus	haemolytic	enterotoxin	(HBL)
DUF3810	PF12725.2	gi|257051213|ref|YP_003129046.1|	-	0.059	12.2	0.9	0.085	11.7	0.6	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3810)
INCENP_N	PF12178.3	gi|257051214|ref|YP_003129047.1|	-	0.082	12.4	0.2	0.16	11.5	0.1	1.4	1	0	0	1	1	1	0	Chromosome	passenger	complex	(CPC)	protein	INCENP	N	terminal
VIT1	PF01988.14	gi|257051215|ref|YP_003129048.1|	-	0.00079	18.9	1.9	0.00085	18.8	1.3	1.0	1	0	0	1	1	1	1	VIT	family
DUF1418	PF07214.7	gi|257051215|ref|YP_003129048.1|	-	1.3	8.7	6.3	1.6	8.3	4.3	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1418)
MMR_HSR1_C	PF08438.5	gi|257051216|ref|YP_003129049.1|	-	8.1e-29	100.0	0.0	1.2e-28	99.4	0.0	1.3	1	0	0	1	1	1	1	GTPase	of	unknown	function	C-terminal
MMR_HSR1	PF01926.18	gi|257051216|ref|YP_003129049.1|	-	3.5e-18	65.6	0.0	2.2e-17	63.0	0.0	2.1	3	0	0	3	3	3	1	50S	ribosome-binding	GTPase
TGS	PF02824.16	gi|257051216|ref|YP_003129049.1|	-	1.6e-10	40.6	0.0	3.4e-10	39.6	0.0	1.6	1	0	0	1	1	1	1	TGS	domain
FeoB_N	PF02421.13	gi|257051216|ref|YP_003129049.1|	-	1.7e-05	24.1	0.0	0.00018	20.8	0.0	2.4	3	0	0	3	3	3	1	Ferrous	iron	transport	protein	B
Miro	PF08477.8	gi|257051216|ref|YP_003129049.1|	-	0.053	14.0	0.0	0.37	11.2	0.0	2.4	2	1	0	2	2	2	0	Miro-like	protein
ArgK	PF03308.11	gi|257051216|ref|YP_003129049.1|	-	0.085	11.6	0.0	0.14	10.9	0.0	1.3	1	0	0	1	1	1	0	ArgK	protein
Dynamin_N	PF00350.18	gi|257051216|ref|YP_003129049.1|	-	0.1	12.3	0.2	0.64	9.8	0.0	2.2	3	0	0	3	3	3	0	Dynamin	family
TP6A_N	PF04406.9	gi|257051217|ref|YP_003129050.1|	-	3e-20	71.6	0.3	5.1e-20	70.9	0.2	1.4	1	0	0	1	1	1	1	Type	IIB	DNA	topoisomerase
Topo-VIb_trans	PF09239.6	gi|257051218|ref|YP_003129051.1|	-	2.8e-66	221.9	0.0	4.5e-65	218.0	0.0	2.4	2	0	0	2	2	2	1	Topoisomerase	VI	B	subunit,	transducer
HATPase_c	PF02518.21	gi|257051218|ref|YP_003129051.1|	-	4.5e-15	55.3	0.0	1.6e-14	53.5	0.0	2.0	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_3	PF13589.1	gi|257051218|ref|YP_003129051.1|	-	5.7e-13	48.7	0.0	1.3e-12	47.5	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Regulator_TrmB	PF11495.3	gi|257051219|ref|YP_003129052.1|	-	8.6e-50	168.8	0.4	1.2e-49	168.4	0.3	1.2	1	0	0	1	1	1	1	Archaeal	transcriptional	regulator	TrmB
TrmB	PF01978.14	gi|257051219|ref|YP_003129052.1|	-	6.9e-17	60.9	0.0	2e-16	59.4	0.0	1.8	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.7	gi|257051219|ref|YP_003129052.1|	-	0.00074	19.1	0.3	0.013	15.1	0.0	2.6	2	0	0	2	2	2	1	HTH	domain
HTH_24	PF13412.1	gi|257051219|ref|YP_003129052.1|	-	0.0014	17.9	0.0	0.0025	17.1	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Rrf2	PF02082.15	gi|257051219|ref|YP_003129052.1|	-	0.0015	18.5	0.0	0.0037	17.3	0.0	1.6	1	0	0	1	1	1	1	Transcriptional	regulator
MarR_2	PF12802.2	gi|257051219|ref|YP_003129052.1|	-	0.0034	17.0	0.0	0.0084	15.7	0.0	1.7	1	0	0	1	1	1	1	MarR	family
HTH_36	PF13730.1	gi|257051219|ref|YP_003129052.1|	-	0.0056	16.7	0.0	0.036	14.2	0.0	2.2	1	1	1	2	2	2	1	Helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|257051219|ref|YP_003129052.1|	-	0.0063	16.0	0.0	0.025	14.1	0.0	2.1	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_Crp_2	PF13545.1	gi|257051219|ref|YP_003129052.1|	-	0.043	13.5	0.0	0.11	12.2	0.0	1.6	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
MarR	PF01047.17	gi|257051219|ref|YP_003129052.1|	-	0.057	13.1	0.0	0.1	12.2	0.0	1.5	1	0	0	1	1	1	0	MarR	family
FaeA	PF04703.7	gi|257051219|ref|YP_003129052.1|	-	0.15	12.2	0.0	0.38	10.9	0.0	1.7	1	1	0	1	1	1	0	FaeA-like	protein
DNA_gyraseB	PF00204.20	gi|257051220|ref|YP_003129053.1|	-	4.4e-59	198.5	0.6	4.4e-59	198.5	0.4	1.6	2	0	0	2	2	2	1	DNA	gyrase	B
DNA_gyraseB_C	PF00986.16	gi|257051220|ref|YP_003129053.1|	-	8.1e-30	102.3	0.0	1.6e-29	101.4	0.0	1.5	1	0	0	1	1	1	1	DNA	gyrase	B	subunit,	carboxyl	terminus
Toprim	PF01751.17	gi|257051220|ref|YP_003129053.1|	-	2.8e-26	91.4	0.0	1.2e-25	89.3	0.0	2.1	2	0	0	2	2	2	1	Toprim	domain
HATPase_c	PF02518.21	gi|257051220|ref|YP_003129053.1|	-	1e-21	76.7	0.1	1.9e-21	75.8	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_3	PF13589.1	gi|257051220|ref|YP_003129053.1|	-	2.7e-05	23.8	0.0	5.7e-05	22.7	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Toprim_4	PF13662.1	gi|257051220|ref|YP_003129053.1|	-	0.048	13.6	0.0	0.16	12.0	0.0	2.0	1	0	0	1	1	1	0	Toprim	domain
DNA_topoisoIV	PF00521.15	gi|257051221|ref|YP_003129054.1|	-	1.9e-154	514.6	0.0	2.4e-154	514.3	0.0	1.1	1	0	0	1	1	1	1	DNA	gyrase/topoisomerase	IV,	subunit	A
DNA_gyraseA_C	PF03989.8	gi|257051221|ref|YP_003129054.1|	-	3.3e-62	205.5	4.7	6.7e-13	47.7	0.2	6.5	6	0	0	6	6	6	6	DNA	gyrase	C-terminal	domain,	beta-propeller
IKI3	PF04762.7	gi|257051221|ref|YP_003129054.1|	-	0.024	12.4	0.6	0.27	9.0	0.0	2.2	1	1	1	2	2	2	0	IKI3	family
Nnf1	PF03980.9	gi|257051221|ref|YP_003129054.1|	-	0.047	13.6	0.7	13	5.8	0.5	2.6	2	0	0	2	2	2	0	Nnf1
PilJ	PF13675.1	gi|257051221|ref|YP_003129054.1|	-	0.12	12.6	0.7	0.33	11.2	0.5	1.7	1	0	0	1	1	1	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
Transgly_assoc	PF04226.8	gi|257051222|ref|YP_003129055.1|	-	0.09	12.8	11.2	1.2	9.2	0.0	3.6	3	1	1	4	4	4	0	Transglycosylase	associated	protein
DUF1469	PF07332.6	gi|257051223|ref|YP_003129056.1|	-	0.015	15.0	9.7	0.28	10.9	2.5	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1469)
DUF2189	PF09955.4	gi|257051223|ref|YP_003129056.1|	-	0.068	13.1	0.4	0.068	13.1	0.3	2.9	2	1	0	2	2	2	0	Predicted	integral	membrane	protein	(DUF2189)
DUF1772	PF08592.6	gi|257051223|ref|YP_003129056.1|	-	0.13	11.9	3.4	0.33	10.6	0.6	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1772)
DUF3084	PF11283.3	gi|257051223|ref|YP_003129056.1|	-	1	9.2	4.6	9.6	6.1	0.3	2.8	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3084)
OrfB_Zn_ribbon	PF07282.6	gi|257051224|ref|YP_003129057.1|	-	5.9e-19	67.4	5.5	1.1e-18	66.6	2.0	2.6	2	1	0	2	2	2	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.14	gi|257051224|ref|YP_003129057.1|	-	5.2e-10	39.1	0.0	8.6e-10	38.4	0.0	1.3	1	0	0	1	1	1	1	Probable	transposase
DUF585	PF04522.7	gi|257051224|ref|YP_003129057.1|	-	0.0045	16.4	0.4	0.0089	15.4	0.3	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF585)
DZR	PF12773.2	gi|257051224|ref|YP_003129057.1|	-	0.067	13.0	6.7	0.084	12.7	1.7	2.3	2	0	0	2	2	2	0	Double	zinc	ribbon
PAS_7	PF12860.2	gi|257051224|ref|YP_003129057.1|	-	0.32	11.0	2.0	0.37	10.8	0.4	1.8	2	0	0	2	2	2	0	PAS	fold
zf-ribbon_3	PF13248.1	gi|257051224|ref|YP_003129057.1|	-	0.96	8.7	3.5	19	4.6	0.2	2.4	1	1	1	2	2	2	0	zinc-ribbon	domain
Ribosomal_L37e	PF01907.14	gi|257051224|ref|YP_003129057.1|	-	2.1	8.1	7.3	7.2	6.4	0.4	2.6	1	1	1	2	2	2	0	Ribosomal	protein	L37e
DUF2232	PF09991.4	gi|257051225|ref|YP_003129058.1|	-	0.0022	17.0	1.3	0.0034	16.4	0.9	1.3	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2232)
7TM-7TMR_HD	PF07698.6	gi|257051225|ref|YP_003129058.1|	-	0.46	9.8	8.6	0.031	13.7	2.2	1.7	2	0	0	2	2	2	0	7TM	receptor	with	intracellular	HD	hydrolase
DUF211	PF02680.9	gi|257051226|ref|YP_003129059.1|	-	1e-32	111.7	1.9	1.1e-32	111.6	1.3	1.0	1	0	0	1	1	1	1	Uncharacterized	ArCR,	COG1888
PilN	PF05137.8	gi|257051226|ref|YP_003129059.1|	-	0.023	14.4	0.1	0.044	13.6	0.1	1.4	1	1	0	1	1	1	0	Fimbrial	assembly	protein	(PilN)
VIT1	PF01988.14	gi|257051227|ref|YP_003129060.1|	-	8.4e-18	64.6	15.7	7.2e-12	45.2	5.2	2.0	1	1	1	2	2	2	2	VIT	family
DUF1700	PF08006.6	gi|257051227|ref|YP_003129060.1|	-	0.19	11.0	1.4	0.31	10.3	1.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1700)
GSDH	PF07995.6	gi|257051228|ref|YP_003129061.1|	-	3.3e-37	128.2	0.0	4.5e-37	127.8	0.0	1.2	1	0	0	1	1	1	1	Glucose	/	Sorbosone	dehydrogenase
PUA	PF01472.15	gi|257051229|ref|YP_003129062.1|	-	2.5e-16	59.1	2.2	4.8e-16	58.2	1.5	1.5	1	0	0	1	1	1	1	PUA	domain
RNB	PF00773.14	gi|257051230|ref|YP_003129063.1|	-	4.8e-77	259.4	0.0	6.4e-75	252.4	0.0	2.1	1	1	0	1	1	1	1	RNB	domain
Clp_N	PF02861.15	gi|257051230|ref|YP_003129063.1|	-	0.0026	17.6	0.4	8.9	6.3	0.1	3.5	3	0	0	3	3	3	2	Clp	amino	terminal	domain
SQS_PSY	PF00494.14	gi|257051231|ref|YP_003129064.1|	-	1.5e-57	194.8	10.9	1.9e-57	194.5	7.5	1.0	1	0	0	1	1	1	1	Squalene/phytoene	synthase
E3_binding	PF02817.12	gi|257051231|ref|YP_003129064.1|	-	0.14	11.8	0.1	18	5.1	0.0	2.4	2	0	0	2	2	2	0	e3	binding	domain
DUF552	PF04472.7	gi|257051232|ref|YP_003129065.1|	-	7.1e-17	61.1	1.8	8.8e-17	60.8	1.3	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF552)
ATP-grasp_3	PF02655.9	gi|257051232|ref|YP_003129065.1|	-	0.0075	16.1	0.1	0.0097	15.7	0.1	1.1	1	0	0	1	1	1	1	ATP-grasp	domain
DUF2088	PF09861.4	gi|257051232|ref|YP_003129065.1|	-	0.055	12.4	0.1	0.065	12.2	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF2088)
KIF1B	PF12423.3	gi|257051233|ref|YP_003129066.1|	-	0.045	13.7	0.0	0.086	12.8	0.0	1.5	1	0	0	1	1	1	0	Kinesin	protein	1B
HypA	PF01155.14	gi|257051234|ref|YP_003129067.1|	-	0.0015	18.1	3.2	0.018	14.7	0.2	2.2	2	0	0	2	2	2	1	Hydrogenase	expression/synthesis	hypA	family
Zn-ribbon_8	PF09723.5	gi|257051234|ref|YP_003129067.1|	-	0.007	16.2	6.0	0.062	13.2	1.4	2.5	2	0	0	2	2	2	1	Zinc	ribbon	domain
RNHCP	PF12647.2	gi|257051234|ref|YP_003129067.1|	-	0.018	14.8	1.4	0.099	12.4	0.2	2.2	2	0	0	2	2	2	0	RNHCP	domain
DZR	PF12773.2	gi|257051234|ref|YP_003129067.1|	-	0.031	14.0	1.8	0.84	9.4	0.2	2.4	2	0	0	2	2	2	0	Double	zinc	ribbon
zinc_ribbon_2	PF13240.1	gi|257051234|ref|YP_003129067.1|	-	0.16	11.4	2.1	29	4.3	0.0	3.3	3	0	0	3	3	3	0	zinc-ribbon	domain
zf-ISL3	PF14690.1	gi|257051234|ref|YP_003129067.1|	-	0.48	10.5	2.6	26	4.9	0.0	3.1	3	0	0	3	3	3	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
DNA_RNApol_7kD	PF03604.8	gi|257051234|ref|YP_003129067.1|	-	1.2	8.6	4.3	5.6	6.5	0.1	2.9	3	0	0	3	3	3	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
A2L_zn_ribbon	PF08792.5	gi|257051234|ref|YP_003129067.1|	-	1.4	8.4	4.5	2.8	7.5	0.1	3.1	3	0	0	3	3	3	0	A2L	zinc	ribbon	domain
zf-ribbon_3	PF13248.1	gi|257051234|ref|YP_003129067.1|	-	2.2	7.6	8.0	23	4.3	3.1	2.8	2	1	0	2	2	2	0	zinc-ribbon	domain
zf-IS66	PF13005.2	gi|257051234|ref|YP_003129067.1|	-	3.5	7.6	7.7	13	5.8	0.4	3.2	3	0	0	3	3	3	0	zinc-finger	binding	domain	of	transposase	IS66
MarR_2	PF12802.2	gi|257051235|ref|YP_003129068.1|	-	0.0022	17.6	0.3	0.0034	17.0	0.2	1.3	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.2	gi|257051235|ref|YP_003129068.1|	-	0.021	14.6	0.2	0.031	14.0	0.2	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
Rrf2	PF02082.15	gi|257051235|ref|YP_003129068.1|	-	0.071	13.2	0.0	0.1	12.6	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
EAP30	PF04157.11	gi|257051235|ref|YP_003129068.1|	-	0.093	11.8	0.1	0.11	11.6	0.0	1.1	1	0	0	1	1	1	0	EAP30/Vps36	family
RPA_C	PF08784.6	gi|257051235|ref|YP_003129068.1|	-	0.14	12.5	0.0	0.2	12.1	0.0	1.2	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
ThiF	PF00899.16	gi|257051238|ref|YP_003129071.1|	-	1e-40	138.7	0.1	1.3e-40	138.3	0.1	1.2	1	0	0	1	1	1	1	ThiF	family
MoeZ_MoeB	PF05237.8	gi|257051238|ref|YP_003129071.1|	-	1.5e-30	104.6	0.0	2.8e-30	103.7	0.0	1.5	1	0	0	1	1	1	1	MoeZ/MoeB	domain
DapB_N	PF01113.15	gi|257051238|ref|YP_003129071.1|	-	0.022	14.6	2.0	0.16	11.9	1.4	2.1	1	1	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
Shikimate_DH	PF01488.15	gi|257051238|ref|YP_003129071.1|	-	0.1	12.7	0.7	2.3	8.3	0.2	2.3	1	1	1	2	2	2	0	Shikimate	/	quinate	5-dehydrogenase
Yip1	PF04893.12	gi|257051239|ref|YP_003129072.1|	-	3.8e-12	46.0	14.6	4.6e-12	45.7	10.1	1.0	1	0	0	1	1	1	1	Yip1	domain
DUF1282	PF06930.7	gi|257051239|ref|YP_003129072.1|	-	0.0057	16.3	7.5	0.0072	15.9	5.2	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1282)
DUF2512	PF10710.4	gi|257051239|ref|YP_003129072.1|	-	0.55	9.6	6.7	0.35	10.3	0.2	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2512)
Peptidase_M32	PF02074.10	gi|257051240|ref|YP_003129073.1|	-	7.5e-149	496.5	0.3	8.6e-149	496.3	0.2	1.0	1	0	0	1	1	1	1	Carboxypeptidase	Taq	(M32)	metallopeptidase
PrkA	PF06798.7	gi|257051240|ref|YP_003129073.1|	-	0.04	13.2	0.0	0.088	12.0	0.0	1.5	1	0	0	1	1	1	0	PrkA	serine	protein	kinase	C-terminal	domain
RHH_1	PF01402.16	gi|257051241|ref|YP_003129074.1|	-	0.072	13.0	0.7	0.27	11.1	0.0	2.2	2	1	1	3	3	3	0	Ribbon-helix-helix	protein,	copG	family
RepB-RCR_reg	PF10723.4	gi|257051241|ref|YP_003129074.1|	-	0.14	11.8	0.0	0.29	10.9	0.0	1.5	1	0	0	1	1	1	0	Replication	regulatory	protein	RepB
Phage_integrase	PF00589.17	gi|257051242|ref|YP_003129075.1|	-	2.2e-15	56.7	0.0	4.2e-15	55.8	0.0	1.5	1	0	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_1	PF02899.12	gi|257051242|ref|YP_003129075.1|	-	1.2e-09	38.2	0.5	2.7e-09	37.0	0.3	1.7	1	0	0	1	1	1	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_4	PF13495.1	gi|257051242|ref|YP_003129075.1|	-	1.9e-05	24.8	0.2	4e-05	23.8	0.1	1.5	1	0	0	1	1	1	1	Phage	integrase,	N-terminal	SAM-like	domain
Glyco_hydro_3	PF00933.16	gi|257051243|ref|YP_003129076.1|	-	2.5e-75	253.2	0.0	3.3e-75	252.8	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	N	terminal	domain
Glyco_hydro_3_C	PF01915.17	gi|257051243|ref|YP_003129076.1|	-	1.2e-57	195.0	0.0	1.7e-57	194.5	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	C-terminal	domain
Fn3-like	PF14310.1	gi|257051243|ref|YP_003129076.1|	-	9e-21	73.6	0.0	1.9e-20	72.5	0.0	1.6	1	0	0	1	1	1	1	Fibronectin	type	III-like	domain
Bac_rhamnosid	PF05592.6	gi|257051244|ref|YP_003129077.1|	-	8.1e-157	522.4	0.0	1e-156	522.1	0.0	1.1	1	0	0	1	1	1	1	Bacterial	alpha-L-rhamnosidase
Bac_rhamnosid_N	PF08531.5	gi|257051244|ref|YP_003129077.1|	-	2.3e-51	173.7	1.2	6.1e-51	172.3	0.1	2.2	2	0	0	2	2	2	1	Alpha-L-rhamnosidase	N-terminal	domain
F5_F8_type_C	PF00754.20	gi|257051244|ref|YP_003129077.1|	-	5.4e-07	29.4	0.1	3e-05	23.8	0.1	2.7	1	1	0	1	1	1	1	F5/8	type	C	domain
DUF3210	PF11489.3	gi|257051244|ref|YP_003129077.1|	-	0.15	10.7	0.0	0.24	10.0	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3210)
DUF2413	PF10310.4	gi|257051245|ref|YP_003129078.1|	-	0.018	13.8	0.0	0.027	13.2	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2413)
DUF2119	PF09892.4	gi|257051245|ref|YP_003129078.1|	-	0.042	13.1	0.0	0.076	12.2	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2119)
UxaC	PF02614.9	gi|257051246|ref|YP_003129079.1|	-	7.8e-134	446.7	0.0	8.8e-134	446.5	0.0	1.0	1	0	0	1	1	1	1	Glucuronate	isomerase
Glyco_hydro_4	PF02056.11	gi|257051247|ref|YP_003129080.1|	-	2.5e-48	163.8	0.0	3.4e-48	163.3	0.0	1.2	1	0	0	1	1	1	1	Family	4	glycosyl	hydrolase
Glyco_hydro_4C	PF11975.3	gi|257051247|ref|YP_003129080.1|	-	2.3e-31	109.3	0.0	4.4e-31	108.4	0.0	1.5	1	1	0	1	1	1	1	Family	4	glycosyl	hydrolase	C-terminal	domain
Ldh_1_N	PF00056.18	gi|257051247|ref|YP_003129080.1|	-	0.00087	19.1	0.0	0.25	11.1	0.0	2.3	2	0	0	2	2	2	2	lactate/malate	dehydrogenase,	NAD	binding	domain
OCD_Mu_crystall	PF02423.10	gi|257051247|ref|YP_003129080.1|	-	0.039	12.7	0.0	0.072	11.8	0.0	1.3	1	0	0	1	1	1	0	Ornithine	cyclodeaminase/mu-crystallin	family
PQQ_2	PF13360.1	gi|257051248|ref|YP_003129081.1|	-	3.2e-31	108.6	4.6	1.7e-13	50.5	0.4	3.3	2	1	1	3	3	3	3	PQQ-like	domain
PQQ	PF01011.16	gi|257051248|ref|YP_003129081.1|	-	3.7e-16	57.7	7.4	9.1e-05	21.8	0.0	7.1	7	0	0	7	7	7	4	PQQ	enzyme	repeat
PQQ_3	PF13570.1	gi|257051248|ref|YP_003129081.1|	-	1.8e-12	47.1	40.8	0.0035	17.5	0.1	9.1	7	2	1	8	8	8	7	PQQ-like	domain
ABC_tran	PF00005.22	gi|257051249|ref|YP_003129082.1|	-	9.5e-30	103.6	0.0	1.3e-29	103.2	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|257051249|ref|YP_003129082.1|	-	9.3e-11	42.2	0.0	3.5e-05	23.9	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|257051249|ref|YP_003129082.1|	-	8.2e-06	25.2	0.0	0.029	13.5	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_25	PF13481.1	gi|257051249|ref|YP_003129082.1|	-	6.9e-05	22.3	0.1	0.00017	21.0	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
AAA_28	PF13521.1	gi|257051249|ref|YP_003129082.1|	-	0.00034	20.6	0.0	0.0026	17.7	0.0	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|257051249|ref|YP_003129082.1|	-	0.00056	19.3	0.1	0.0011	18.4	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
SbcCD_C	PF13558.1	gi|257051249|ref|YP_003129082.1|	-	0.0029	17.4	0.9	0.013	15.3	0.7	2.0	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_17	PF13207.1	gi|257051249|ref|YP_003129082.1|	-	0.0045	17.8	0.3	0.014	16.2	0.2	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_23	PF13476.1	gi|257051249|ref|YP_003129082.1|	-	0.007	16.7	0.1	0.01	16.1	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|257051249|ref|YP_003129082.1|	-	0.0081	16.1	0.4	0.018	15.0	0.3	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_33	PF13671.1	gi|257051249|ref|YP_003129082.1|	-	0.011	15.6	0.0	0.63	9.9	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
DUF258	PF03193.11	gi|257051249|ref|YP_003129082.1|	-	0.015	14.4	0.0	0.024	13.8	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
IstB_IS21	PF01695.12	gi|257051249|ref|YP_003129082.1|	-	0.018	14.4	0.0	1.1	8.6	0.0	2.3	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
Miro	PF08477.8	gi|257051249|ref|YP_003129082.1|	-	0.022	15.2	0.0	0.039	14.4	0.0	1.4	1	0	0	1	1	1	0	Miro-like	protein
AAA_19	PF13245.1	gi|257051249|ref|YP_003129082.1|	-	0.027	14.2	0.2	0.22	11.2	0.0	2.5	3	0	0	3	3	2	0	Part	of	AAA	domain
AAA_30	PF13604.1	gi|257051249|ref|YP_003129082.1|	-	0.041	13.4	0.0	0.078	12.5	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
DUF4597	PF15366.1	gi|257051249|ref|YP_003129082.1|	-	0.046	13.2	0.1	0.11	12.1	0.1	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4597)
AAA_10	PF12846.2	gi|257051249|ref|YP_003129082.1|	-	0.055	12.9	0.1	0.11	11.9	0.1	1.7	1	1	0	1	1	1	0	AAA-like	domain
AAA_18	PF13238.1	gi|257051249|ref|YP_003129082.1|	-	0.07	13.4	0.0	0.96	9.7	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
MMR_HSR1	PF01926.18	gi|257051249|ref|YP_003129082.1|	-	0.089	12.7	0.0	0.21	11.5	0.0	1.6	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
AAA_14	PF13173.1	gi|257051249|ref|YP_003129082.1|	-	0.17	11.7	0.0	0.31	10.9	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.7	gi|257051249|ref|YP_003129082.1|	-	0.17	11.5	0.1	0.46	10.1	0.0	1.7	2	0	0	2	2	2	0	NACHT	domain
AAA_13	PF13166.1	gi|257051249|ref|YP_003129082.1|	-	0.21	10.0	0.0	0.52	8.7	0.0	1.5	2	0	0	2	2	2	0	AAA	domain
CbiQ	PF02361.11	gi|257051250|ref|YP_003129083.1|	-	3.8e-27	95.3	11.0	5e-27	94.9	7.6	1.1	1	0	0	1	1	1	1	Cobalt	transport	protein
CbiM	PF01891.11	gi|257051251|ref|YP_003129084.1|	-	8.8e-57	192.0	25.9	8.8e-57	192.0	17.9	2.0	2	0	0	2	2	2	1	Cobalt	uptake	substrate-specific	transmembrane	region
PDGLE	PF13190.1	gi|257051251|ref|YP_003129084.1|	-	5.6e-09	35.5	4.6	5.6e-09	35.5	3.2	3.9	1	1	1	2	2	2	1	PDGLE	domain
TM_helix	PF05552.7	gi|257051251|ref|YP_003129084.1|	-	0.0014	18.2	2.4	0.091	12.4	0.6	3.0	2	0	0	2	2	2	2	Conserved	TM	helix
NikR_C	PF08753.6	gi|257051252|ref|YP_003129085.1|	-	2e-23	82.0	2.9	2.8e-23	81.5	2.0	1.2	1	0	0	1	1	1	1	NikR	C	terminal	nickel	binding	domain
RHH_1	PF01402.16	gi|257051252|ref|YP_003129085.1|	-	4.1e-05	23.2	0.0	0.00063	19.5	0.0	2.4	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
zf-DNA_Pol	PF08996.5	gi|257051253|ref|YP_003129086.1|	-	0.042	13.2	0.4	0.062	12.6	0.3	1.2	1	0	0	1	1	1	0	DNA	Polymerase	alpha	zinc	finger
Lar_restr_allev	PF14354.1	gi|257051253|ref|YP_003129086.1|	-	0.13	12.5	4.3	0.44	10.8	3.0	1.9	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
DUF4212	PF13937.1	gi|257051254|ref|YP_003129087.1|	-	0.016	15.1	1.3	0.018	15.0	0.9	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4212)
Amino_oxidase	PF01593.19	gi|257051255|ref|YP_003129088.1|	-	1.3e-14	54.1	4.6	6.1e-10	38.7	0.9	2.0	1	1	1	2	2	2	2	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.1	gi|257051255|ref|YP_003129088.1|	-	2.1e-12	46.8	0.1	5e-12	45.6	0.1	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.19	gi|257051255|ref|YP_003129088.1|	-	1.2e-09	37.5	0.7	3.2e-05	22.9	0.1	2.3	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.1	gi|257051255|ref|YP_003129088.1|	-	3.2e-06	27.3	0.7	2.3e-05	24.5	0.5	2.1	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.1	gi|257051255|ref|YP_003129088.1|	-	2.4e-05	24.1	0.9	0.11	12.2	0.0	2.4	2	0	0	2	2	2	2	FAD-NAD(P)-binding
FAD_oxidored	PF12831.2	gi|257051255|ref|YP_003129088.1|	-	0.033	13.2	1.3	0.035	13.1	0.9	1.2	1	0	0	1	1	1	0	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.9	gi|257051255|ref|YP_003129088.1|	-	0.034	14.0	1.9	0.063	13.1	1.0	1.4	1	1	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Trp_halogenase	PF04820.9	gi|257051255|ref|YP_003129088.1|	-	0.043	12.4	1.0	0.073	11.6	0.7	1.3	1	0	0	1	1	1	0	Tryptophan	halogenase
HI0933_like	PF03486.9	gi|257051255|ref|YP_003129088.1|	-	0.15	10.5	2.2	2.8	6.3	1.4	2.0	2	0	0	2	2	2	0	HI0933-like	protein
Pyr_redox	PF00070.22	gi|257051255|ref|YP_003129088.1|	-	0.2	12.1	1.4	0.44	10.9	1.0	1.6	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.19	gi|257051255|ref|YP_003129088.1|	-	1.9	7.2	6.8	0.63	8.8	1.3	2.1	2	1	0	2	2	2	0	FAD	binding	domain
GIDA	PF01134.17	gi|257051255|ref|YP_003129088.1|	-	2.4	6.9	4.3	1.8	7.3	2.0	1.5	2	0	0	2	2	2	0	Glucose	inhibited	division	protein	A
DUF91	PF01939.11	gi|257051256|ref|YP_003129089.1|	-	4.6e-64	215.6	0.0	5.6e-64	215.4	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF91
PDDEXK_4	PF14281.1	gi|257051256|ref|YP_003129089.1|	-	0.0006	19.7	0.0	0.00083	19.2	0.0	1.2	1	0	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
Mrr_cat	PF04471.7	gi|257051256|ref|YP_003129089.1|	-	0.013	15.3	0.0	0.02	14.7	0.0	1.3	1	0	0	1	1	1	0	Restriction	endonuclease
Mob_synth_C	PF06463.8	gi|257051257|ref|YP_003129090.1|	-	3.7e-30	104.2	0.0	5.7e-30	103.6	0.0	1.3	1	0	0	1	1	1	1	Molybdenum	Cofactor	Synthesis	C
Radical_SAM	PF04055.16	gi|257051257|ref|YP_003129090.1|	-	8.9e-25	87.7	0.0	1.3e-24	87.1	0.0	1.3	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_12	PF13353.1	gi|257051257|ref|YP_003129090.1|	-	6.3e-08	32.8	0.0	1.1e-07	32.0	0.0	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.1	gi|257051257|ref|YP_003129090.1|	-	9.7e-08	32.0	0.0	1.8e-07	31.1	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
zinc_ribbon_2	PF13240.1	gi|257051258|ref|YP_003129091.1|	-	0.00017	20.9	0.8	0.0018	17.6	0.1	2.1	1	1	1	2	2	2	1	zinc-ribbon	domain
PhnA_Zn_Ribbon	PF08274.7	gi|257051258|ref|YP_003129091.1|	-	0.00046	19.9	1.4	0.0012	18.6	1.0	1.7	1	1	0	1	1	1	1	PhnA	Zinc-Ribbon
zf-ribbon_3	PF13248.1	gi|257051258|ref|YP_003129091.1|	-	0.00054	19.0	0.4	0.13	11.4	0.0	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
DNA_RNApol_7kD	PF03604.8	gi|257051258|ref|YP_003129091.1|	-	0.0015	17.9	1.6	0.01	15.2	1.1	1.9	1	1	1	2	2	2	2	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-NADH-PPase	PF09297.6	gi|257051258|ref|YP_003129091.1|	-	0.0016	17.8	0.9	0.74	9.3	0.1	2.1	2	0	0	2	2	2	2	NADH	pyrophosphatase	zinc	ribbon	domain
RNA_POL_M_15KD	PF02150.11	gi|257051258|ref|YP_003129091.1|	-	0.0024	17.5	0.3	0.0046	16.6	0.2	1.5	1	1	0	1	1	1	1	RNA	polymerases	M/15	Kd	subunit
DZR	PF12773.2	gi|257051258|ref|YP_003129091.1|	-	0.003	17.3	0.4	0.0063	16.3	0.3	1.6	1	1	0	1	1	1	1	Double	zinc	ribbon
DUF329	PF03884.9	gi|257051258|ref|YP_003129091.1|	-	0.0052	16.3	0.6	1.4	8.5	0.1	2.1	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF329)
Nudix_N_2	PF14803.1	gi|257051258|ref|YP_003129091.1|	-	0.011	15.4	1.2	1.4	8.7	0.1	2.2	2	0	0	2	2	2	0	Nudix	N-terminal
Zn-ribbon_8	PF09723.5	gi|257051258|ref|YP_003129091.1|	-	0.017	15.0	3.5	0.98	9.4	0.4	2.0	1	1	0	1	1	1	0	Zinc	ribbon	domain
zf-C4_Topoisom	PF01396.14	gi|257051258|ref|YP_003129091.1|	-	0.017	14.6	0.5	0.54	9.8	0.1	2.1	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
Lar_restr_allev	PF14354.1	gi|257051258|ref|YP_003129091.1|	-	0.018	15.3	2.5	0.026	14.8	1.8	1.4	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
UPF0547	PF10571.4	gi|257051258|ref|YP_003129091.1|	-	0.019	14.6	3.9	0.11	12.2	2.5	2.0	1	1	1	2	2	2	0	Uncharacterised	protein	family	UPF0547
zinc_ribbon_5	PF13719.1	gi|257051258|ref|YP_003129091.1|	-	0.02	14.4	0.6	0.065	12.8	0.4	1.8	1	1	1	2	2	2	0	zinc-ribbon	domain
zf-IS66	PF13005.2	gi|257051258|ref|YP_003129091.1|	-	0.021	14.8	3.5	1.9	8.5	1.2	2.2	1	1	1	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
zf-HYPF	PF07503.7	gi|257051258|ref|YP_003129091.1|	-	0.023	14.1	0.2	1.2	8.6	0.0	2.1	2	0	0	2	2	2	0	HypF	finger
TF_Zn_Ribbon	PF08271.7	gi|257051258|ref|YP_003129091.1|	-	0.026	13.8	2.6	0.038	13.3	1.8	1.4	1	0	0	1	1	1	0	TFIIB	zinc-binding
OrfB_Zn_ribbon	PF07282.6	gi|257051258|ref|YP_003129091.1|	-	0.031	13.9	0.2	0.04	13.5	0.1	1.2	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zf-TFIIB	PF13453.1	gi|257051258|ref|YP_003129091.1|	-	0.033	13.3	0.4	4.6	6.5	0.1	2.2	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
zinc-ribbons_6	PF07191.7	gi|257051258|ref|YP_003129091.1|	-	0.036	13.8	0.4	0.054	13.2	0.3	1.4	1	1	0	1	1	1	0	zinc-ribbons
HypA	PF01155.14	gi|257051258|ref|YP_003129091.1|	-	0.042	13.5	0.3	0.046	13.3	0.2	1.1	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
Prok-RING_1	PF14446.1	gi|257051258|ref|YP_003129091.1|	-	0.046	13.4	5.2	0.11	12.2	3.6	1.6	1	1	0	1	1	1	0	Prokaryotic	RING	finger	family	1
zinc_ribbon_4	PF13717.1	gi|257051258|ref|YP_003129091.1|	-	0.053	13.2	0.6	0.28	10.8	0.4	1.9	1	1	1	2	2	2	0	zinc-ribbon	domain
YhfH	PF14149.1	gi|257051258|ref|YP_003129091.1|	-	0.064	13.0	0.9	8.6	6.2	0.0	2.1	2	0	0	2	2	2	0	YhfH-like	protein
zf-tcix	PF14952.1	gi|257051258|ref|YP_003129091.1|	-	0.07	12.4	1.6	2.1	7.7	0.1	2.1	2	0	0	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
Ribosomal_S27e	PF01667.12	gi|257051258|ref|YP_003129091.1|	-	0.073	12.6	0.3	0.11	12.0	0.2	1.3	1	0	0	1	1	1	0	Ribosomal	protein	S27
A2L_zn_ribbon	PF08792.5	gi|257051258|ref|YP_003129091.1|	-	0.087	12.3	0.5	11	5.5	0.0	2.1	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
Elf1	PF05129.8	gi|257051258|ref|YP_003129091.1|	-	0.1	12.3	0.2	0.14	11.8	0.1	1.2	1	0	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
Desulfoferrod_N	PF06397.7	gi|257051258|ref|YP_003129091.1|	-	0.1	12.0	0.2	1.1	8.6	0.0	2.0	2	0	0	2	2	2	0	Desulfoferrodoxin,	N-terminal	domain
Cys_rich_CPXG	PF14255.1	gi|257051258|ref|YP_003129091.1|	-	0.1	12.4	2.3	0.34	10.7	1.6	1.8	1	1	0	1	1	1	0	Cysteine-rich	CPXCG
DUF3797	PF12677.2	gi|257051258|ref|YP_003129091.1|	-	0.19	11.4	1.7	7.1	6.3	0.3	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3797)
DNA_ligase_ZBD	PF03119.11	gi|257051258|ref|YP_003129091.1|	-	0.19	11.4	5.2	0.23	11.1	0.7	2.3	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
DUF2387	PF09526.5	gi|257051258|ref|YP_003129091.1|	-	0.22	11.4	0.9	0.26	11.2	0.6	1.2	1	0	0	1	1	1	0	Probable	metal-binding	protein	(DUF2387)
DUF983	PF06170.7	gi|257051258|ref|YP_003129091.1|	-	0.22	11.6	2.2	12	6.0	0.1	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF983)
DUF1610	PF07754.6	gi|257051258|ref|YP_003129091.1|	-	0.37	10.9	6.5	3.8	7.7	0.7	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
zf-dskA_traR	PF01258.12	gi|257051258|ref|YP_003129091.1|	-	1.9	8.2	4.5	11	5.8	3.1	2.0	1	1	0	1	1	1	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
Rubredoxin	PF00301.15	gi|257051258|ref|YP_003129091.1|	-	1.9	8.4	4.6	13	5.7	0.2	2.3	2	1	0	2	2	2	0	Rubredoxin
DUF2249	PF10006.4	gi|257051259|ref|YP_003129092.1|	-	1e-15	57.0	0.4	1.2e-15	56.7	0.3	1.1	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2249)
TusA	PF01206.12	gi|257051259|ref|YP_003129092.1|	-	0.00014	21.4	0.0	0.00016	21.1	0.0	1.2	1	0	0	1	1	1	1	Sulfurtransferase	TusA
COX1	PF00115.15	gi|257051261|ref|YP_003129094.1|	-	5e-06	25.4	9.6	5e-06	25.4	6.6	4.8	1	1	4	5	5	5	3	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
HATPase_c	PF02518.21	gi|257051263|ref|YP_003129096.1|	-	1.9e-11	43.6	0.0	3.6e-11	42.7	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.1	gi|257051263|ref|YP_003129096.1|	-	3e-09	36.7	0.0	5.6e-09	35.8	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HATPase_c_3	PF13589.1	gi|257051263|ref|YP_003129096.1|	-	0.007	16.0	0.0	0.015	14.9	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.20	gi|257051263|ref|YP_003129096.1|	-	0.051	13.5	1.5	0.082	12.9	0.3	1.9	2	0	0	2	2	2	0	His	Kinase	A	(phospho-acceptor)	domain
Trns_repr_metal	PF02583.12	gi|257051263|ref|YP_003129096.1|	-	0.1	12.7	0.8	0.75	10.0	0.1	2.3	1	1	1	2	2	2	0	Metal-sensitive	transcriptional	repressor
NIR_SIR	PF01077.17	gi|257051264|ref|YP_003129097.1|	-	1.1e-42	145.0	0.0	7.1e-31	106.6	0.0	2.4	2	0	0	2	2	2	2	Nitrite	and	sulphite	reductase	4Fe-4S	domain
NIR_SIR_ferr	PF03460.12	gi|257051264|ref|YP_003129097.1|	-	7.5e-40	134.4	0.8	1.1e-19	69.8	0.0	3.8	3	1	0	3	3	3	2	Nitrite/Sulfite	reductase	ferredoxin-like	half	domain
Rhodanese	PF00581.15	gi|257051264|ref|YP_003129097.1|	-	1.3e-32	112.5	0.0	1.3e-17	64.1	0.0	2.4	2	0	0	2	2	2	2	Rhodanese-like	domain
DUF1932	PF09130.6	gi|257051264|ref|YP_003129097.1|	-	0.011	15.3	0.0	0.37	10.5	0.0	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1932)
FrhB_FdhB_C	PF04432.8	gi|257051265|ref|YP_003129098.1|	-	1.7e-27	95.8	0.2	1.1e-26	93.1	0.0	2.1	2	0	0	2	2	2	1	Coenzyme	F420	hydrogenase/dehydrogenase,	beta	subunit	C	terminus
FrhB_FdhB_N	PF04422.8	gi|257051265|ref|YP_003129098.1|	-	7.5e-14	51.3	0.7	1.4e-13	50.5	0.5	1.5	1	0	0	1	1	1	1	Coenzyme	F420	hydrogenase/dehydrogenase,	beta	subunit	N-term
Fer4_21	PF14697.1	gi|257051265|ref|YP_003129098.1|	-	6.7e-09	35.4	8.6	6.7e-09	35.4	6.0	1.6	2	0	0	2	2	1	1	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|257051265|ref|YP_003129098.1|	-	2.4e-07	30.0	19.8	5.2e-06	25.8	2.7	3.2	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_7	PF12838.2	gi|257051265|ref|YP_003129098.1|	-	3e-07	30.7	13.5	7.2e-07	29.4	8.6	2.2	2	1	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|257051265|ref|YP_003129098.1|	-	8.2e-07	29.6	4.7	0.011	16.5	0.7	2.6	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_10	PF13237.1	gi|257051265|ref|YP_003129098.1|	-	2.6e-06	27.1	14.4	3.2e-05	23.6	9.6	2.6	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|257051265|ref|YP_003129098.1|	-	3e-06	26.8	18.6	6.6e-05	22.5	2.9	3.1	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_9	PF13187.1	gi|257051265|ref|YP_003129098.1|	-	7.9e-06	26.0	11.3	7.9e-06	26.0	7.8	2.1	2	1	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|257051265|ref|YP_003129098.1|	-	2.9e-05	24.0	19.8	0.0017	18.5	3.6	3.1	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_6	PF12837.2	gi|257051265|ref|YP_003129098.1|	-	0.0002	21.0	3.8	0.0002	21.0	2.7	3.1	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_8	PF13183.1	gi|257051265|ref|YP_003129098.1|	-	0.00023	21.1	24.9	0.0015	18.5	9.8	2.5	2	1	2	4	4	4	3	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|257051265|ref|YP_003129098.1|	-	0.0004	20.6	10.8	0.006	16.9	1.0	2.6	1	1	2	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|257051265|ref|YP_003129098.1|	-	0.0027	18.0	15.8	0.16	12.4	2.6	2.5	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_15	PF13459.1	gi|257051265|ref|YP_003129098.1|	-	0.036	14.6	12.5	0.55	10.8	2.4	3.0	1	1	1	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_20	PF14691.1	gi|257051265|ref|YP_003129098.1|	-	0.067	12.8	0.4	0.067	12.8	0.3	1.9	2	0	0	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_13	PF13370.1	gi|257051265|ref|YP_003129098.1|	-	1.4	9.4	16.5	1.5	9.2	3.4	2.7	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
Gly-zipper_OmpA	PF13436.1	gi|257051267|ref|YP_003129100.1|	-	5.7e-06	25.9	7.7	5.7e-06	25.9	5.3	1.1	1	0	0	1	1	1	1	Glycine-zipper	containing	OmpA-like	membrane	domain
Gly-zipper_YMGG	PF13441.1	gi|257051267|ref|YP_003129100.1|	-	5.9e-05	22.5	20.6	0.0001	21.7	14.2	1.4	1	1	0	1	1	1	1	YMGG-like	Gly-zipper
Gly-zipper_Omp	PF13488.1	gi|257051267|ref|YP_003129100.1|	-	0.00012	21.6	19.4	0.00059	19.4	13.8	1.8	1	1	1	2	2	2	2	Glycine	zipper
DUF456	PF04306.8	gi|257051267|ref|YP_003129100.1|	-	0.00084	19.3	0.9	0.00092	19.2	0.6	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF456)
Rick_17kDa_Anti	PF05433.10	gi|257051267|ref|YP_003129100.1|	-	0.0027	17.3	19.8	0.0066	16.0	13.6	1.6	1	1	1	2	2	2	2	Glycine	zipper	2TM	domain
Bacteriocin_IIc	PF10439.4	gi|257051267|ref|YP_003129100.1|	-	0.0055	16.8	7.5	0.0073	16.4	5.2	1.2	1	0	0	1	1	1	1	Bacteriocin	class	II	with	double-glycine	leader	peptide
TraT	PF05818.7	gi|257051267|ref|YP_003129100.1|	-	0.1	11.9	3.5	0.11	11.9	2.4	1.1	1	0	0	1	1	1	0	Enterobacterial	TraT	complement	resistance	protein
Peptidase_M18	PF02127.10	gi|257051267|ref|YP_003129100.1|	-	0.15	10.5	0.3	0.17	10.3	0.2	1.0	1	0	0	1	1	1	0	Aminopeptidase	I	zinc	metalloprotease	(M18)
DUF3482	PF11981.3	gi|257051267|ref|YP_003129100.1|	-	1.6	7.8	6.0	1.9	7.6	4.2	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3482)
Chorismate_synt	PF01264.16	gi|257051269|ref|YP_003129102.1|	-	1.8e-119	398.3	0.0	2e-119	398.1	0.0	1.0	1	0	0	1	1	1	1	Chorismate	synthase
UDG	PF03167.14	gi|257051271|ref|YP_003129104.1|	-	4.8e-22	78.0	0.0	5.9e-22	77.7	0.0	1.1	1	0	0	1	1	1	1	Uracil	DNA	glycosylase	superfamily
CBS	PF00571.23	gi|257051272|ref|YP_003129105.1|	-	2.3e-27	94.5	5.4	6.9e-15	54.5	0.6	2.1	2	0	0	2	2	2	2	CBS	domain
DUF2064	PF09837.4	gi|257051273|ref|YP_003129106.1|	-	0.0039	16.7	0.0	0.0064	16.1	0.0	1.4	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2064)
DUF1297	PF06973.7	gi|257051273|ref|YP_003129106.1|	-	0.072	12.4	0.0	0.12	11.6	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1297)
AAA	PF00004.24	gi|257051274|ref|YP_003129107.1|	-	7.4e-101	333.5	0.0	5.4e-49	165.7	0.0	2.4	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
CDC48_N	PF02359.13	gi|257051274|ref|YP_003129107.1|	-	1.4e-24	85.7	0.1	9.2e-24	83.2	0.1	2.3	2	0	0	2	2	2	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
AAA_2	PF07724.9	gi|257051274|ref|YP_003129107.1|	-	2.3e-18	66.6	0.1	3.1e-09	36.9	0.0	2.5	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
RuvB_N	PF05496.7	gi|257051274|ref|YP_003129107.1|	-	3.3e-16	59.0	0.0	1e-07	31.2	0.0	2.7	3	0	0	3	3	2	2	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_16	PF13191.1	gi|257051274|ref|YP_003129107.1|	-	5.8e-15	55.7	0.2	3.7e-07	30.3	0.0	3.3	3	1	0	3	3	2	2	AAA	ATPase	domain
CDC48_2	PF02933.12	gi|257051274|ref|YP_003129107.1|	-	1.7e-14	53.2	0.6	3.9e-14	52.0	0.4	1.7	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	domain	2
AAA_22	PF13401.1	gi|257051274|ref|YP_003129107.1|	-	3e-13	50.0	0.4	0.00011	22.4	0.0	3.9	2	2	0	2	2	2	2	AAA	domain
AAA_14	PF13173.1	gi|257051274|ref|YP_003129107.1|	-	7.3e-12	45.3	0.0	0.00014	21.7	0.0	2.7	3	0	0	3	3	2	2	AAA	domain
AAA_33	PF13671.1	gi|257051274|ref|YP_003129107.1|	-	5.4e-11	42.5	0.0	7.6e-05	22.6	0.0	2.9	2	1	0	2	2	2	2	AAA	domain
AAA_5	PF07728.9	gi|257051274|ref|YP_003129107.1|	-	6.1e-11	42.1	1.4	0.00075	19.2	0.1	4.5	2	2	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
AAA_17	PF13207.1	gi|257051274|ref|YP_003129107.1|	-	3.3e-10	40.8	6.6	0.00035	21.3	0.2	3.9	2	2	0	2	2	2	2	AAA	domain
TIP49	PF06068.8	gi|257051274|ref|YP_003129107.1|	-	3.7e-10	39.1	0.0	0.00016	20.5	0.0	2.5	2	0	0	2	2	2	2	TIP49	C-terminus
AAA_19	PF13245.1	gi|257051274|ref|YP_003129107.1|	-	7.3e-10	38.4	0.1	0.0023	17.6	0.0	2.9	2	0	0	2	2	2	2	Part	of	AAA	domain
Zeta_toxin	PF06414.7	gi|257051274|ref|YP_003129107.1|	-	1.7e-09	37.0	0.1	0.0022	17.1	0.0	2.8	3	0	0	3	3	3	2	Zeta	toxin
IstB_IS21	PF01695.12	gi|257051274|ref|YP_003129107.1|	-	2.3e-09	36.8	0.0	0.00031	20.2	0.0	2.4	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
RNA_helicase	PF00910.17	gi|257051274|ref|YP_003129107.1|	-	3.5e-08	33.5	0.0	0.014	15.5	0.0	2.6	2	0	0	2	2	2	2	RNA	helicase
AAA_18	PF13238.1	gi|257051274|ref|YP_003129107.1|	-	1.3e-07	31.9	0.2	0.046	14.0	0.1	3.5	3	1	0	3	3	2	2	AAA	domain
AAA_25	PF13481.1	gi|257051274|ref|YP_003129107.1|	-	2.2e-07	30.4	7.6	0.1	12.0	0.1	4.4	2	2	1	3	3	3	3	AAA	domain
AAA_28	PF13521.1	gi|257051274|ref|YP_003129107.1|	-	4e-07	30.1	0.0	0.031	14.2	0.0	2.8	2	0	0	2	2	2	2	AAA	domain
Mg_chelatase	PF01078.16	gi|257051274|ref|YP_003129107.1|	-	1e-06	28.0	0.4	0.03	13.4	0.0	2.4	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
AAA_3	PF07726.6	gi|257051274|ref|YP_003129107.1|	-	2.4e-06	27.1	0.0	0.026	14.1	0.0	2.7	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activ_2	PF14532.1	gi|257051274|ref|YP_003129107.1|	-	3.9e-06	26.9	0.0	0.12	12.4	0.0	3.4	4	0	0	4	4	3	2	Sigma-54	interaction	domain
Sigma54_activat	PF00158.21	gi|257051274|ref|YP_003129107.1|	-	4.3e-06	26.3	0.0	0.12	11.8	0.0	3.5	4	0	0	4	4	4	2	Sigma-54	interaction	domain
DUF815	PF05673.8	gi|257051274|ref|YP_003129107.1|	-	4.8e-06	25.6	0.0	0.0096	14.8	0.0	2.9	2	1	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
NACHT	PF05729.7	gi|257051274|ref|YP_003129107.1|	-	5.2e-06	26.2	0.2	0.22	11.1	0.0	3.8	4	0	0	4	4	4	2	NACHT	domain
KaiC	PF06745.8	gi|257051274|ref|YP_003129107.1|	-	5.4e-06	25.6	0.6	0.2	10.7	0.0	3.5	3	1	1	4	4	3	2	KaiC
PhoH	PF02562.11	gi|257051274|ref|YP_003129107.1|	-	7.1e-06	25.3	0.2	0.042	13.0	0.0	2.4	2	0	0	2	2	2	2	PhoH-like	protein
NB-ARC	PF00931.17	gi|257051274|ref|YP_003129107.1|	-	1.2e-05	24.3	0.0	0.069	12.0	0.0	2.5	3	0	0	3	3	2	2	NB-ARC	domain
DUF2075	PF09848.4	gi|257051274|ref|YP_003129107.1|	-	1.6e-05	24.0	0.1	0.27	10.1	0.0	3.0	3	0	0	3	3	3	2	Uncharacterized	conserved	protein	(DUF2075)
Arch_ATPase	PF01637.13	gi|257051274|ref|YP_003129107.1|	-	2.4e-05	24.1	0.0	0.54	9.9	0.0	3.3	2	1	1	3	3	3	2	Archaeal	ATPase
ABC_tran	PF00005.22	gi|257051274|ref|YP_003129107.1|	-	3.4e-05	24.1	0.0	0.15	12.3	0.0	2.7	2	0	0	2	2	2	2	ABC	transporter
AAA_24	PF13479.1	gi|257051274|ref|YP_003129107.1|	-	3.9e-05	23.3	0.0	0.047	13.2	0.0	2.5	2	0	0	2	2	2	1	AAA	domain
AAA_30	PF13604.1	gi|257051274|ref|YP_003129107.1|	-	4.2e-05	23.2	0.0	0.3	10.6	0.0	2.8	2	0	0	2	2	2	2	AAA	domain
NTPase_1	PF03266.10	gi|257051274|ref|YP_003129107.1|	-	9e-05	22.2	0.9	0.19	11.4	0.0	3.7	2	2	1	3	3	3	1	NTPase
Parvo_NS1	PF01057.12	gi|257051274|ref|YP_003129107.1|	-	0.00011	21.1	0.0	0.32	9.8	0.0	2.2	2	0	0	2	2	2	2	Parvovirus	non-structural	protein	NS1
AAA_11	PF13086.1	gi|257051274|ref|YP_003129107.1|	-	0.00012	21.7	0.0	0.38	10.2	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
UPF0079	PF02367.12	gi|257051274|ref|YP_003129107.1|	-	0.00012	21.6	0.0	0.58	9.7	0.0	2.7	2	0	0	2	2	2	2	Uncharacterised	P-loop	hydrolase	UPF0079
Bac_DnaA	PF00308.13	gi|257051274|ref|YP_003129107.1|	-	0.00066	19.3	0.0	0.17	11.5	0.0	2.4	2	0	0	2	2	2	1	Bacterial	dnaA	protein
ResIII	PF04851.10	gi|257051274|ref|YP_003129107.1|	-	0.0011	18.8	0.0	2.1	8.1	0.0	2.7	3	0	0	3	3	2	1	Type	III	restriction	enzyme,	res	subunit
T2SE	PF00437.15	gi|257051274|ref|YP_003129107.1|	-	0.0018	17.2	0.0	1.2	7.9	0.0	2.5	2	0	0	2	2	2	1	Type	II/IV	secretion	system	protein
ATP-synt_ab	PF00006.20	gi|257051274|ref|YP_003129107.1|	-	0.0072	15.8	0.0	0.64	9.4	0.0	2.6	2	1	0	2	2	2	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
KAP_NTPase	PF07693.9	gi|257051274|ref|YP_003129107.1|	-	0.0074	15.3	0.1	2.6	6.9	0.0	3.3	2	2	2	4	4	4	1	KAP	family	P-loop	domain
Molydop_binding	PF01568.16	gi|257051274|ref|YP_003129107.1|	-	0.015	15.1	0.1	0.072	12.9	0.0	2.1	3	0	0	3	3	1	0	Molydopterin	dinucleotide	binding	domain
Viral_helicase1	PF01443.13	gi|257051274|ref|YP_003129107.1|	-	0.018	14.5	0.0	2.1	7.8	0.0	2.3	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
Guanylate_kin	PF00625.16	gi|257051274|ref|YP_003129107.1|	-	0.024	14.0	0.2	18	4.6	0.0	3.7	2	2	1	3	3	3	0	Guanylate	kinase
AAA_29	PF13555.1	gi|257051274|ref|YP_003129107.1|	-	0.029	13.8	0.0	4	7.0	0.0	2.5	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
KTI12	PF08433.5	gi|257051274|ref|YP_003129107.1|	-	0.037	13.2	0.0	8.8	5.4	0.0	2.4	2	0	0	2	2	2	0	Chromatin	associated	protein	KTI12
SKI	PF01202.17	gi|257051274|ref|YP_003129107.1|	-	0.038	13.8	0.0	5.3	6.8	0.0	2.6	2	0	0	2	2	2	0	Shikimate	kinase
Torsin	PF06309.6	gi|257051274|ref|YP_003129107.1|	-	0.056	13.3	0.0	4.6	7.1	0.0	2.4	2	0	0	2	2	2	0	Torsin
AFG1_ATPase	PF03969.11	gi|257051274|ref|YP_003129107.1|	-	0.059	12.1	0.0	3.8	6.2	0.0	2.4	2	0	0	2	2	2	0	AFG1-like	ATPase
Zot	PF05707.7	gi|257051274|ref|YP_003129107.1|	-	0.14	11.6	0.5	28	4.0	0.2	3.3	2	1	0	2	2	2	0	Zonular	occludens	toxin	(Zot)
DAP3	PF10236.4	gi|257051274|ref|YP_003129107.1|	-	0.17	10.7	0.0	8.7	5.1	0.0	2.2	2	0	0	2	2	2	0	Mitochondrial	ribosomal	death-associated	protein	3
PIF1	PF05970.9	gi|257051274|ref|YP_003129107.1|	-	0.22	10.4	0.0	5.9	5.7	0.0	2.1	2	0	0	2	2	2	0	PIF1-like	helicase
DEAD	PF00270.24	gi|257051274|ref|YP_003129107.1|	-	0.32	10.4	1.4	46	3.4	0.0	3.3	2	2	1	4	4	4	0	DEAD/DEAH	box	helicase
Pantoate_transf	PF02548.10	gi|257051276|ref|YP_003129109.1|	-	1.6e-100	335.5	0.4	1.8e-100	335.3	0.3	1.0	1	0	0	1	1	1	1	Ketopantoate	hydroxymethyltransferase
PEP_mutase	PF13714.1	gi|257051276|ref|YP_003129109.1|	-	8.9e-09	34.9	3.3	3.3e-08	33.0	2.1	2.0	1	1	1	2	2	2	1	Phosphoenolpyruvate	phosphomutase
2Fe-2S_Ferredox	PF11591.3	gi|257051277|ref|YP_003129110.1|	-	0.72	9.5	2.6	2.4	7.8	0.4	2.1	2	0	0	2	2	2	0	Ferredoxin	chloroplastic	transit	peptide
HAD_2	PF13419.1	gi|257051278|ref|YP_003129111.1|	-	3.6e-14	53.3	0.1	1.4e-12	48.1	0.1	2.0	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|257051278|ref|YP_003129111.1|	-	1.8e-06	27.5	0.0	3.8e-06	26.5	0.0	1.6	1	0	0	1	1	1	1	HAD-hyrolase-like
Hydrolase	PF00702.21	gi|257051278|ref|YP_003129111.1|	-	5.1e-06	27.0	0.5	0.00079	19.8	0.0	2.1	1	1	1	2	2	2	2	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.2	gi|257051278|ref|YP_003129111.1|	-	0.00042	20.5	0.1	0.0006	20.0	0.1	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HHH_5	PF14520.1	gi|257051278|ref|YP_003129111.1|	-	0.0051	16.9	0.4	0.013	15.6	0.3	1.7	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
DUF4613	PF15390.1	gi|257051278|ref|YP_003129111.1|	-	0.11	10.6	0.0	0.14	10.3	0.0	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4613)
Hydrolase_3	PF08282.7	gi|257051278|ref|YP_003129111.1|	-	0.18	11.3	0.1	1.3	8.5	0.0	1.9	2	0	0	2	2	2	0	haloacid	dehalogenase-like	hydrolase
DUF2984	PF11203.3	gi|257051278|ref|YP_003129111.1|	-	6.7	6.8	6.9	1.5	8.9	1.2	2.2	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2984)
Prenyltransf	PF01255.14	gi|257051279|ref|YP_003129112.1|	-	1e-29	103.2	0.0	1.3e-28	99.6	0.0	2.0	2	0	0	2	2	2	2	Putative	undecaprenyl	diphosphate	synthase
DUF92	PF01940.11	gi|257051280|ref|YP_003129113.1|	-	4.8e-62	209.0	17.1	4.8e-62	209.0	11.9	2.2	2	1	0	2	2	2	1	Integral	membrane	protein	DUF92
Acetyltransf_1	PF00583.19	gi|257051281|ref|YP_003129114.1|	-	2.4e-14	53.1	0.2	3.5e-14	52.5	0.1	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.1	gi|257051281|ref|YP_003129114.1|	-	1.8e-11	44.0	0.0	2.7e-11	43.4	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.1	gi|257051281|ref|YP_003129114.1|	-	3.5e-09	36.7	0.1	4.4e-09	36.4	0.1	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_6	PF13480.1	gi|257051281|ref|YP_003129114.1|	-	7.5e-07	29.2	0.4	9.8e-07	28.8	0.3	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|257051281|ref|YP_003129114.1|	-	0.0011	18.6	0.1	0.0018	17.9	0.1	1.4	1	1	0	1	1	1	1	FR47-like	protein
Acetyltransf_9	PF13527.1	gi|257051281|ref|YP_003129114.1|	-	0.0021	17.8	0.1	0.014	15.2	0.1	2.0	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.1	gi|257051281|ref|YP_003129114.1|	-	0.0033	17.3	0.0	0.0041	17.0	0.0	1.3	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
DUF3749	PF12568.3	gi|257051281|ref|YP_003129114.1|	-	0.017	14.7	0.0	0.02	14.4	0.0	1.1	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.1	gi|257051281|ref|YP_003129114.1|	-	0.02	14.7	0.0	0.042	13.7	0.0	1.4	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.1	gi|257051281|ref|YP_003129114.1|	-	0.038	14.1	0.0	0.061	13.4	0.0	1.4	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.1	gi|257051281|ref|YP_003129114.1|	-	0.088	12.7	0.1	0.15	11.9	0.0	1.4	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
Toprim_4	PF13662.1	gi|257051282|ref|YP_003129115.1|	-	1.1e-09	38.1	0.2	3.6e-09	36.4	0.1	1.9	1	0	0	1	1	1	1	Toprim	domain
Toprim_2	PF13155.1	gi|257051282|ref|YP_003129115.1|	-	0.02	15.2	0.0	0.041	14.1	0.0	1.5	1	0	0	1	1	1	0	Toprim-like
Toprim	PF01751.17	gi|257051282|ref|YP_003129115.1|	-	0.033	14.1	0.1	0.15	12.0	0.1	2.1	1	1	0	1	1	1	0	Toprim	domain
PAS_9	PF13426.1	gi|257051283|ref|YP_003129116.1|	-	2.2e-14	53.6	0.0	3.6e-14	52.9	0.0	1.4	1	0	0	1	1	1	1	PAS	domain
STAS	PF01740.16	gi|257051283|ref|YP_003129116.1|	-	5.5e-12	45.1	0.1	1e-11	44.3	0.1	1.4	1	0	0	1	1	1	1	STAS	domain
PAS_4	PF08448.5	gi|257051283|ref|YP_003129116.1|	-	5.4e-10	39.2	0.0	9e-10	38.5	0.0	1.4	1	0	0	1	1	1	1	PAS	fold
STAS_2	PF13466.1	gi|257051283|ref|YP_003129116.1|	-	1.1e-06	28.5	0.9	2.1e-06	27.6	0.6	1.5	1	0	0	1	1	1	1	STAS	domain
PAS	PF00989.19	gi|257051283|ref|YP_003129116.1|	-	1.4e-05	24.8	0.0	3.3e-05	23.6	0.0	1.6	1	0	0	1	1	1	1	PAS	fold
PAS_5	PF07310.8	gi|257051283|ref|YP_003129116.1|	-	0.011	15.3	0.0	0.034	13.7	0.0	1.8	3	0	0	3	3	3	0	PAS	domain
ATP-grasp_5	PF13549.1	gi|257051283|ref|YP_003129116.1|	-	0.04	13.1	0.2	0.088	12.0	0.0	1.6	2	0	0	2	2	2	0	ATP-grasp	domain
PAS_3	PF08447.6	gi|257051283|ref|YP_003129116.1|	-	0.056	13.5	0.0	0.098	12.7	0.0	1.4	1	0	0	1	1	1	0	PAS	fold
HHH_5	PF14520.1	gi|257051283|ref|YP_003129116.1|	-	0.75	10.0	4.5	65	3.8	0.0	4.4	2	1	1	3	3	3	0	Helix-hairpin-helix	domain
STAS	PF01740.16	gi|257051284|ref|YP_003129117.1|	-	9.1e-08	31.5	0.0	1e-07	31.3	0.0	1.1	1	0	0	1	1	1	1	STAS	domain
STAS_2	PF13466.1	gi|257051284|ref|YP_003129117.1|	-	6.2e-06	26.1	0.3	1.3e-05	25.1	0.0	1.6	2	0	0	2	2	2	1	STAS	domain
DUF4325	PF14213.1	gi|257051284|ref|YP_003129117.1|	-	0.067	12.8	0.0	0.14	11.7	0.0	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4325)
CPDase	PF07823.6	gi|257051284|ref|YP_003129117.1|	-	0.11	11.9	0.0	0.11	11.9	0.0	1.1	1	0	0	1	1	1	0	Cyclic	phosphodiesterase-like	protein
HATPase_c_2	PF13581.1	gi|257051285|ref|YP_003129118.1|	-	4.5e-14	52.3	0.1	5.7e-14	51.9	0.1	1.1	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HATPase_c	PF02518.21	gi|257051285|ref|YP_003129118.1|	-	2.7e-08	33.4	0.2	3.7e-08	33.0	0.1	1.2	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.1	gi|257051286|ref|YP_003129119.1|	-	7.5e-11	41.9	0.5	1.7e-10	40.7	0.3	1.5	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
SpoIIE	PF07228.7	gi|257051286|ref|YP_003129119.1|	-	4.6e-10	39.5	2.2	1e-09	38.3	1.0	1.9	2	0	0	2	2	2	1	Stage	II	sporulation	protein	E	(SpoIIE)
HATPase_c	PF02518.21	gi|257051286|ref|YP_003129119.1|	-	5.7e-06	26.0	0.3	1.1e-05	25.0	0.2	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c	PF02518.21	gi|257051287|ref|YP_003129120.1|	-	1.3e-18	66.7	0.0	3e-18	65.5	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_9	PF13426.1	gi|257051287|ref|YP_003129120.1|	-	3.2e-09	37.1	0.0	1.3e-08	35.0	0.0	2.1	2	0	0	2	2	2	1	PAS	domain
PAS_3	PF08447.6	gi|257051287|ref|YP_003129120.1|	-	1.5e-08	34.5	0.0	4.8e-08	32.9	0.0	1.9	1	0	0	1	1	1	1	PAS	fold
PAS_8	PF13188.1	gi|257051287|ref|YP_003129120.1|	-	3.7e-08	32.9	0.0	2.7e-07	30.2	0.0	2.5	2	0	0	2	2	1	1	PAS	domain
PAS	PF00989.19	gi|257051287|ref|YP_003129120.1|	-	1.1e-06	28.3	0.1	4.8e-06	26.3	0.0	2.1	2	0	0	2	2	2	1	PAS	fold
PAS_4	PF08448.5	gi|257051287|ref|YP_003129120.1|	-	2.9e-06	27.2	0.7	8.6e-06	25.7	0.1	2.2	2	0	0	2	2	2	1	PAS	fold
HATPase_c_2	PF13581.1	gi|257051287|ref|YP_003129120.1|	-	8.3e-06	25.6	0.2	3.8e-05	23.4	0.0	2.3	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
HATPase_c_5	PF14501.1	gi|257051287|ref|YP_003129120.1|	-	1.1e-05	25.0	0.0	0.00015	21.3	0.0	2.4	2	0	0	2	2	2	1	GHKL	domain
HisKA	PF00512.20	gi|257051287|ref|YP_003129120.1|	-	0.00014	21.8	1.5	0.00014	21.8	1.0	2.3	2	0	0	2	2	1	1	His	Kinase	A	(phospho-acceptor)	domain
SPOB_a	PF14689.1	gi|257051287|ref|YP_003129120.1|	-	0.0014	18.1	0.2	0.0074	15.8	0.0	2.2	2	0	0	2	2	2	1	Sensor_kinase_SpoOB-type,	alpha-helical	domain
FliJ	PF02050.11	gi|257051287|ref|YP_003129120.1|	-	0.071	13.1	1.8	1.3	9.1	0.0	2.7	2	1	0	2	2	2	0	Flagellar	FliJ	protein
IncA	PF04156.9	gi|257051287|ref|YP_003129120.1|	-	0.099	12.2	4.5	0.61	9.6	0.3	2.3	2	0	0	2	2	2	0	IncA	protein
TMF_DNA_bd	PF12329.3	gi|257051287|ref|YP_003129120.1|	-	0.2	11.5	2.5	0.66	9.8	0.2	2.5	2	0	0	2	2	2	0	TATA	element	modulatory	factor	1	DNA	binding
Tropomyosin	PF00261.15	gi|257051287|ref|YP_003129120.1|	-	0.44	9.5	8.7	0.26	10.3	0.3	2.3	2	0	0	2	2	2	0	Tropomyosin
DUF904	PF06005.7	gi|257051287|ref|YP_003129120.1|	-	0.54	10.5	5.0	16	5.9	0.3	2.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF904)
PspA_IM30	PF04012.7	gi|257051287|ref|YP_003129120.1|	-	0.69	9.2	5.9	0.33	10.2	0.4	2.2	2	0	0	2	2	2	0	PspA/IM30	family
NPV_P10	PF05531.7	gi|257051287|ref|YP_003129120.1|	-	1.4	9.2	8.1	5	7.4	0.8	3.9	4	1	0	4	4	4	0	Nucleopolyhedrovirus	P10	protein
GrpE	PF01025.14	gi|257051287|ref|YP_003129120.1|	-	1.9	7.9	7.2	3.6	7.0	0.4	2.4	2	0	0	2	2	2	0	GrpE
SlyX	PF04102.7	gi|257051287|ref|YP_003129120.1|	-	7.1	7.0	6.9	6	7.3	0.4	2.7	2	0	0	2	2	2	0	SlyX
DUF3311	PF11755.3	gi|257051288|ref|YP_003129121.1|	-	1.3e-12	47.0	13.8	1.7e-12	46.6	9.6	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3311)
TRAP-gamma	PF07074.7	gi|257051288|ref|YP_003129121.1|	-	0.2	11.2	2.2	0.17	11.4	1.1	1.3	1	1	0	1	1	1	0	Translocon-associated	protein,	gamma	subunit	(TRAP-gamma)
HCV_NS4a	PF01006.15	gi|257051288|ref|YP_003129121.1|	-	0.72	9.4	3.2	0.86	9.1	1.4	1.7	1	1	0	1	1	1	0	Hepatitis	C	virus	non-structural	protein	NS4a
FA_desaturase	PF00487.19	gi|257051288|ref|YP_003129121.1|	-	3	7.2	9.2	3.3	7.0	6.4	1.1	1	0	0	1	1	1	0	Fatty	acid	desaturase
SSF	PF00474.12	gi|257051289|ref|YP_003129122.1|	-	5.6e-44	150.4	25.6	7.5e-44	149.9	17.7	1.1	1	0	0	1	1	1	1	Sodium:solute	symporter	family
DUF3918	PF13056.1	gi|257051289|ref|YP_003129122.1|	-	0.3	10.4	0.1	0.3	10.4	0.1	3.7	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF3918)
Glutaredoxin	PF00462.19	gi|257051291|ref|YP_003129124.1|	-	5.1e-15	55.2	0.0	7.3e-15	54.7	0.0	1.2	1	0	0	1	1	1	1	Glutaredoxin
GST_N_3	PF13417.1	gi|257051291|ref|YP_003129124.1|	-	0.055	13.7	0.0	0.077	13.2	0.0	1.2	1	0	0	1	1	1	0	Glutathione	S-transferase,	N-terminal	domain
BolA	PF01722.13	gi|257051292|ref|YP_003129125.1|	-	1.7e-18	66.3	0.1	1.9e-18	66.1	0.1	1.1	1	0	0	1	1	1	1	BolA-like	protein
DUF3972	PF13118.1	gi|257051292|ref|YP_003129125.1|	-	0.036	14.1	0.1	0.039	14.0	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3972)
tRNA-synt_1	PF00133.17	gi|257051293|ref|YP_003129126.1|	-	2.4e-118	395.7	0.0	3.9e-117	391.7	0.0	2.3	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.8	gi|257051293|ref|YP_003129126.1|	-	1.6e-32	112.3	0.0	3.2e-32	111.4	0.0	1.5	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1g	PF09334.6	gi|257051293|ref|YP_003129126.1|	-	1.1e-24	86.8	0.4	7.3e-12	44.6	0.0	3.5	3	1	0	3	3	3	3	tRNA	synthetases	class	I	(M)
tRNA-synt_1_2	PF13603.1	gi|257051293|ref|YP_003129126.1|	-	3.9e-05	23.0	0.0	0.00013	21.3	0.0	1.8	1	1	1	2	2	2	1	Leucyl-tRNA	synthetase,	Domain	2
tRNA-synt_1f	PF01921.13	gi|257051293|ref|YP_003129126.1|	-	0.00018	20.2	0.0	0.0042	15.8	0.0	2.2	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(K)
tRNA-synt_1e	PF01406.14	gi|257051293|ref|YP_003129126.1|	-	0.00058	19.0	0.0	0.25	10.4	0.0	2.6	2	1	0	2	2	2	2	tRNA	synthetases	class	I	(C)	catalytic	domain
DUF3047	PF11249.3	gi|257051293|ref|YP_003129126.1|	-	0.007	15.7	0.2	0.018	14.4	0.2	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3047)
DZR	PF12773.2	gi|257051293|ref|YP_003129126.1|	-	0.04	13.7	0.4	0.86	9.4	0.1	2.4	2	0	0	2	2	2	0	Double	zinc	ribbon
DUF2863	PF11062.3	gi|257051293|ref|YP_003129126.1|	-	0.045	11.8	0.1	0.074	11.1	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2863)
HypA	PF01155.14	gi|257051293|ref|YP_003129126.1|	-	0.12	12.0	0.1	3	7.5	0.0	2.5	2	0	0	2	2	2	0	Hydrogenase	expression/synthesis	hypA	family
DUF35_N	PF12172.3	gi|257051293|ref|YP_003129126.1|	-	0.83	9.6	8.5	3.5	7.6	0.8	3.4	3	0	0	3	3	3	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zf-TFIIB	PF13453.1	gi|257051293|ref|YP_003129126.1|	-	0.84	8.8	4.7	3.4	6.9	0.0	3.3	3	0	0	3	3	3	0	Transcription	factor	zinc-finger
Zn-ribbon_8	PF09723.5	gi|257051293|ref|YP_003129126.1|	-	1.7	8.6	7.3	8.8	6.3	2.8	3.0	2	1	0	2	2	2	0	Zinc	ribbon	domain
zf-dskA_traR	PF01258.12	gi|257051293|ref|YP_003129126.1|	-	2.4	8.0	8.1	0.16	11.7	0.1	2.8	3	0	0	3	3	3	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
DUF204	PF02659.10	gi|257051294|ref|YP_003129127.1|	-	0.92	9.6	7.0	2	8.6	0.3	2.7	2	1	1	3	3	3	0	Domain	of	unknown	function	DUF
TrkA_C	PF02080.16	gi|257051295|ref|YP_003129128.1|	-	0.004	16.7	0.0	0.013	15.0	0.0	1.9	1	0	0	1	1	1	1	TrkA-C	domain
CbiA	PF01656.18	gi|257051296|ref|YP_003129129.1|	-	8.2e-23	80.8	0.1	1.6e-22	79.9	0.0	1.4	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
KaiC	PF06745.8	gi|257051296|ref|YP_003129129.1|	-	1.2e-06	27.8	0.1	0.013	14.6	0.0	2.6	2	1	1	3	3	3	2	KaiC
AAA_26	PF13500.1	gi|257051296|ref|YP_003129129.1|	-	1.2e-05	25.0	1.7	0.0034	16.9	0.1	2.4	2	0	0	2	2	2	2	AAA	domain
ParA	PF10609.4	gi|257051296|ref|YP_003129129.1|	-	2.3e-05	24.1	0.3	4.9e-05	23.1	0.2	1.5	1	0	0	1	1	1	1	ParA/MinD	ATPase	like
AAA_25	PF13481.1	gi|257051296|ref|YP_003129129.1|	-	0.00035	20.0	0.4	2.8	7.2	0.0	3.2	3	0	0	3	3	3	1	AAA	domain
AAA_31	PF13614.1	gi|257051296|ref|YP_003129129.1|	-	0.00049	20.0	0.0	0.0033	17.3	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
MipZ	PF09140.6	gi|257051296|ref|YP_003129129.1|	-	0.00059	18.9	0.0	0.00096	18.2	0.0	1.3	1	0	0	1	1	1	1	ATPase	MipZ
NACHT	PF05729.7	gi|257051296|ref|YP_003129129.1|	-	0.013	15.1	0.0	5	6.7	0.0	2.3	2	0	0	2	2	2	0	NACHT	domain
PAXNEB	PF05625.6	gi|257051296|ref|YP_003129129.1|	-	0.026	13.3	0.0	0.042	12.6	0.0	1.3	1	0	0	1	1	1	0	PAXNEB	protein
GvpD	PF07088.6	gi|257051296|ref|YP_003129129.1|	-	0.029	12.7	0.2	4.7	5.4	0.0	2.2	1	1	0	2	2	2	0	GvpD	gas	vesicle	protein
PRK	PF00485.13	gi|257051296|ref|YP_003129129.1|	-	0.043	13.3	0.0	0.066	12.7	0.0	1.3	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
FTHFS	PF01268.14	gi|257051296|ref|YP_003129129.1|	-	0.084	10.8	0.1	0.11	10.4	0.1	1.1	1	0	0	1	1	1	0	Formate--tetrahydrofolate	ligase
DUF853	PF05872.7	gi|257051296|ref|YP_003129129.1|	-	0.13	10.5	0.2	0.19	10.0	0.1	1.1	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF853)
CbiA	PF01656.18	gi|257051297|ref|YP_003129130.1|	-	4.6e-18	65.3	0.1	6.6e-18	64.8	0.1	1.2	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.1	gi|257051297|ref|YP_003129130.1|	-	2.1e-08	34.2	0.0	4.3e-08	33.2	0.0	1.5	2	0	0	2	2	2	1	AAA	domain
Fer4_NifH	PF00142.13	gi|257051297|ref|YP_003129130.1|	-	1.6e-05	24.2	0.0	0.088	11.9	0.0	2.1	2	0	0	2	2	2	2	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
AAA_17	PF13207.1	gi|257051297|ref|YP_003129130.1|	-	8.5e-05	23.3	0.4	0.00034	21.4	0.2	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.1	gi|257051297|ref|YP_003129130.1|	-	0.00014	21.7	4.8	0.013	15.3	3.3	2.8	1	1	0	1	1	1	1	AAA	domain
MipZ	PF09140.6	gi|257051297|ref|YP_003129130.1|	-	0.0003	19.9	0.4	0.0011	18.0	0.3	1.8	1	1	0	1	1	1	1	ATPase	MipZ
ParA	PF10609.4	gi|257051297|ref|YP_003129130.1|	-	0.0011	18.8	1.1	0.0016	18.2	0.0	1.8	2	0	0	2	2	2	1	ParA/MinD	ATPase	like
ArsA_ATPase	PF02374.10	gi|257051297|ref|YP_003129130.1|	-	0.0028	16.7	1.4	0.019	14.0	0.5	2.0	2	0	0	2	2	2	1	Anion-transporting	ATPase
DUF1311	PF07007.7	gi|257051297|ref|YP_003129130.1|	-	0.032	14.3	0.1	0.059	13.4	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1311)
AAA_25	PF13481.1	gi|257051297|ref|YP_003129130.1|	-	0.034	13.5	2.7	0.053	12.9	1.3	2.0	1	1	1	2	2	2	0	AAA	domain
AAA_26	PF13500.1	gi|257051297|ref|YP_003129130.1|	-	0.036	13.6	1.1	0.35	10.4	0.8	2.1	1	1	0	1	1	1	0	AAA	domain
AAA_18	PF13238.1	gi|257051297|ref|YP_003129130.1|	-	0.085	13.1	0.0	0.21	11.9	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
CARDB	PF07705.6	gi|257051299|ref|YP_003129132.1|	-	3.2e-08	33.5	11.6	7.9e-05	22.6	0.1	4.3	3	1	0	4	4	4	2	CARDB
Peptidase_M26_N	PF05342.9	gi|257051299|ref|YP_003129132.1|	-	0.0054	15.7	0.0	0.011	14.7	0.0	1.4	1	0	0	1	1	1	1	M26	IgA1-specific	Metallo-endopeptidase	N-terminal	region
A2M	PF00207.17	gi|257051299|ref|YP_003129132.1|	-	0.029	13.9	1.7	0.3	10.7	0.0	3.1	3	0	0	3	3	3	0	Alpha-2-macroglobulin	family
MacB_PCD	PF12704.2	gi|257051300|ref|YP_003129133.1|	-	0.05	13.1	0.8	0.056	13.0	0.5	1.3	1	1	0	1	1	1	0	MacB-like	periplasmic	core	domain
Arch_flagellin	PF01917.11	gi|257051300|ref|YP_003129133.1|	-	0.067	12.8	4.6	0.12	11.9	3.2	1.4	1	1	0	1	1	1	0	Archaebacterial	flagellin
YtkA	PF13115.1	gi|257051300|ref|YP_003129133.1|	-	0.07	13.4	2.1	0.21	11.9	0.4	2.1	1	1	1	2	2	2	0	YtkA-like
AAA_10	PF12846.2	gi|257051301|ref|YP_003129134.1|	-	1e-12	48.1	0.0	1e-05	25.1	0.0	2.1	1	1	0	2	2	2	2	AAA-like	domain
DUF87	PF01935.12	gi|257051301|ref|YP_003129134.1|	-	2.9e-06	27.2	0.1	0.00012	21.9	0.0	2.2	1	1	0	2	2	2	1	Domain	of	unknown	function	DUF87
DUF853	PF05872.7	gi|257051301|ref|YP_003129134.1|	-	1e-05	24.0	0.2	0.016	13.5	0.0	2.1	2	0	0	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF853)
FtsK_SpoIIIE	PF01580.13	gi|257051301|ref|YP_003129134.1|	-	0.00046	19.7	0.1	0.054	12.9	0.0	2.3	2	0	0	2	2	2	2	FtsK/SpoIIIE	family
AAA_22	PF13401.1	gi|257051301|ref|YP_003129134.1|	-	0.023	14.8	0.0	5.8	7.0	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
Mrr_N	PF14338.1	gi|257051304|ref|YP_003129137.1|	-	0.00028	20.9	0.0	0.00049	20.1	0.0	1.4	1	0	0	1	1	1	1	Mrr	N-terminal	domain
Aldo_ket_red	PF00248.16	gi|257051305|ref|YP_003129138.1|	-	5.6e-13	48.3	0.0	6.2e-13	48.2	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
DUF2880	PF11082.3	gi|257051305|ref|YP_003129138.1|	-	0.065	13.1	0.1	0.13	12.1	0.1	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2880)
Methyltransf_11	PF08241.7	gi|257051306|ref|YP_003129139.1|	-	7.3e-11	42.4	0.1	1.1e-10	41.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|257051306|ref|YP_003129139.1|	-	1.1e-10	41.4	0.1	1.2e-10	41.2	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|257051306|ref|YP_003129139.1|	-	3.2e-09	37.0	0.1	5.4e-09	36.3	0.1	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|257051306|ref|YP_003129139.1|	-	6.8e-09	36.3	0.1	1.2e-08	35.4	0.0	1.4	2	0	0	2	2	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|257051306|ref|YP_003129139.1|	-	3.4e-08	33.5	0.1	5.6e-08	32.8	0.1	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
MetW	PF07021.7	gi|257051306|ref|YP_003129139.1|	-	1.4e-07	31.0	0.0	2e-07	30.5	0.0	1.1	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Methyltransf_12	PF08242.7	gi|257051306|ref|YP_003129139.1|	-	6.3e-06	26.5	0.1	9.7e-06	25.9	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|257051306|ref|YP_003129139.1|	-	1.4e-05	24.7	0.0	1.5e-05	24.5	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
TehB	PF03848.9	gi|257051306|ref|YP_003129139.1|	-	0.002	17.3	0.0	0.0026	16.9	0.0	1.2	1	0	0	1	1	1	1	Tellurite	resistance	protein	TehB
Methyltransf_24	PF13578.1	gi|257051306|ref|YP_003129139.1|	-	0.0021	18.8	0.2	0.009	16.8	0.0	2.0	1	1	1	2	2	2	1	Methyltransferase	domain
Methyltransf_9	PF08003.6	gi|257051306|ref|YP_003129139.1|	-	0.0067	15.1	0.0	0.0083	14.8	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
DUF938	PF06080.7	gi|257051306|ref|YP_003129139.1|	-	0.03	13.8	0.0	0.057	12.9	0.0	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF938)
Abhydrolase_5	PF12695.2	gi|257051307|ref|YP_003129140.1|	-	0.0033	17.1	0.0	0.0056	16.4	0.0	1.3	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
BAAT_C	PF08840.6	gi|257051307|ref|YP_003129140.1|	-	0.046	13.4	0.0	0.067	12.8	0.0	1.2	1	0	0	1	1	1	0	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
TM_helix	PF05552.7	gi|257051308|ref|YP_003129141.1|	-	2.8e-06	26.8	0.2	2.8e-06	26.8	0.1	3.2	4	0	0	4	4	4	2	Conserved	TM	helix
Abhydrolase_3	PF07859.8	gi|257051309|ref|YP_003129142.1|	-	2.4e-19	69.7	9.4	1.5e-16	60.6	6.5	3.0	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Peptidase_S9	PF00326.16	gi|257051309|ref|YP_003129142.1|	-	2e-18	66.4	0.3	2.1e-13	50.0	0.0	2.2	2	0	0	2	2	2	2	Prolyl	oligopeptidase	family
Abhydrolase_5	PF12695.2	gi|257051309|ref|YP_003129142.1|	-	4.1e-13	49.3	1.0	6.7e-13	48.6	0.7	1.3	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
COesterase	PF00135.23	gi|257051309|ref|YP_003129142.1|	-	1.3e-10	40.6	0.6	9.1e-10	37.8	0.4	2.2	1	1	1	2	2	2	1	Carboxylesterase	family
DLH	PF01738.13	gi|257051309|ref|YP_003129142.1|	-	3e-08	33.2	0.0	1.5e-07	30.9	0.0	2.0	2	0	0	2	2	2	1	Dienelactone	hydrolase	family
Abhydrolase_6	PF12697.2	gi|257051309|ref|YP_003129142.1|	-	3e-06	27.2	11.3	9.3e-06	25.6	8.0	1.7	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
LIP	PF03583.9	gi|257051309|ref|YP_003129142.1|	-	3.1e-05	23.3	1.4	0.0079	15.4	0.0	2.4	2	1	0	2	2	2	1	Secretory	lipase
Esterase_phd	PF10503.4	gi|257051309|ref|YP_003129142.1|	-	0.0013	18.0	3.0	2.1	7.5	0.2	3.7	3	1	1	4	4	4	2	Esterase	PHB	depolymerase
Abhydrolase_2	PF02230.11	gi|257051309|ref|YP_003129142.1|	-	0.0017	17.8	0.0	0.0047	16.3	0.0	1.7	2	0	0	2	2	2	1	Phospholipase/Carboxylesterase
DUF2920	PF11144.3	gi|257051309|ref|YP_003129142.1|	-	0.0049	15.9	0.0	0.18	10.7	0.0	2.7	3	0	0	3	3	3	1	Protein	of	unknown	function	(DUF2920)
Abhydrolase_4	PF08386.5	gi|257051309|ref|YP_003129142.1|	-	0.0072	16.2	0.1	0.02	14.7	0.0	1.8	2	0	0	2	2	2	1	TAP-like	protein
DUF829	PF05705.9	gi|257051309|ref|YP_003129142.1|	-	0.04	13.6	0.0	0.067	12.8	0.0	1.3	1	0	0	1	1	1	0	Eukaryotic	protein	of	unknown	function	(DUF829)
DUF2048	PF09752.4	gi|257051309|ref|YP_003129142.1|	-	0.081	11.7	0.0	0.16	10.8	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2048)
PaaX	PF07848.7	gi|257051309|ref|YP_003129142.1|	-	0.12	12.4	0.0	0.77	9.8	0.0	2.1	2	0	0	2	2	2	0	PaaX-like	protein
HAD	PF12710.2	gi|257051310|ref|YP_003129143.1|	-	1.4e-16	61.1	0.4	1.7e-16	60.9	0.3	1.1	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.21	gi|257051310|ref|YP_003129143.1|	-	1.2e-10	42.1	4.8	8.4e-09	36.1	0.7	2.1	1	1	1	2	2	2	2	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.7	gi|257051310|ref|YP_003129143.1|	-	5.4e-10	39.2	0.3	6e-08	32.5	0.0	2.7	2	1	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HAD_2	PF13419.1	gi|257051310|ref|YP_003129143.1|	-	3.7e-07	30.5	0.7	6.9e-07	29.6	0.1	1.6	2	0	0	2	2	2	1	Haloacid	dehalogenase-like	hydrolase
Put_Phosphatase	PF06888.7	gi|257051310|ref|YP_003129143.1|	-	6.5e-06	25.4	0.0	0.0014	17.8	0.0	2.1	2	0	0	2	2	2	2	Putative	Phosphatase
UMPH-1	PF05822.7	gi|257051310|ref|YP_003129143.1|	-	0.00093	18.5	0.0	0.0012	18.1	0.0	1.2	1	0	0	1	1	1	1	Pyrimidine	5'-nucleotidase	(UMPH-1)
Hydrolase_6	PF13344.1	gi|257051310|ref|YP_003129143.1|	-	0.14	12.0	0.0	0.47	10.3	0.0	2.0	1	1	0	1	1	1	0	Haloacid	dehalogenase-like	hydrolase
MFS_1	PF07690.11	gi|257051311|ref|YP_003129144.1|	-	1.2e-33	116.3	52.4	1.5e-21	76.5	20.4	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.19	gi|257051311|ref|YP_003129144.1|	-	1.9e-06	26.7	12.7	1.9e-06	26.7	8.8	2.4	2	0	0	2	2	2	2	Sugar	(and	other)	transporter
MFS_1_like	PF12832.2	gi|257051311|ref|YP_003129144.1|	-	0.042	13.6	3.5	0.15	11.8	0.0	3.6	4	1	0	4	4	4	0	MFS_1	like	family
OATP	PF03137.15	gi|257051311|ref|YP_003129144.1|	-	0.092	10.7	4.8	0.36	8.8	0.2	2.3	1	1	1	2	2	2	0	Organic	Anion	Transporter	Polypeptide	(OATP)	family
NYN	PF01936.13	gi|257051312|ref|YP_003129145.1|	-	6.2e-35	120.6	0.4	7.6e-35	120.3	0.3	1.0	1	0	0	1	1	1	1	NYN	domain
FMO-like	PF00743.14	gi|257051312|ref|YP_003129145.1|	-	0.048	11.8	0.0	0.062	11.4	0.0	1.1	1	0	0	1	1	1	0	Flavin-binding	monooxygenase-like
DUF3487	PF11990.3	gi|257051313|ref|YP_003129146.1|	-	0.068	12.5	1.4	0.074	12.4	1.0	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3487)
DUF1469	PF07332.6	gi|257051313|ref|YP_003129146.1|	-	2.1	8.0	6.8	2.6	7.8	4.7	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1469)
TGT_C2	PF14810.1	gi|257051314|ref|YP_003129147.1|	-	1.8e-24	85.3	0.1	4e-24	84.2	0.0	1.6	2	0	0	2	2	2	1	Patch-forming	domain	C2	of	tRNA-guanine	transglycosylase
PUA	PF01472.15	gi|257051314|ref|YP_003129147.1|	-	9.1e-15	54.1	0.4	1.8e-14	53.1	0.2	1.5	2	0	0	2	2	2	1	PUA	domain
NAC	PF01849.13	gi|257051315|ref|YP_003129148.1|	-	1.3e-18	66.2	0.2	2e-18	65.6	0.1	1.3	1	0	0	1	1	1	1	NAC	domain
UBA	PF00627.26	gi|257051315|ref|YP_003129148.1|	-	1e-05	25.1	6.4	1.7e-05	24.5	0.2	3.1	3	0	0	3	3	3	1	UBA/TS-N	domain
UBA_4	PF14555.1	gi|257051315|ref|YP_003129148.1|	-	0.00054	19.4	0.2	0.0016	17.9	0.2	1.8	1	0	0	1	1	1	1	UBA-like	domain
CUE	PF02845.11	gi|257051315|ref|YP_003129148.1|	-	0.097	12.1	0.0	0.24	10.9	0.0	1.7	1	0	0	1	1	1	0	CUE	domain
GCD14	PF08704.5	gi|257051316|ref|YP_003129149.1|	-	6.9e-17	61.7	0.0	3.1e-13	49.8	0.0	2.0	1	1	1	2	2	2	2	tRNA	methyltransferase	complex	GCD14	subunit
Methyltransf_18	PF12847.2	gi|257051316|ref|YP_003129149.1|	-	4.2e-12	46.6	0.8	6.1e-12	46.1	0.1	1.5	2	0	0	2	2	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|257051316|ref|YP_003129149.1|	-	2.5e-11	43.6	1.8	2.1e-10	40.6	1.3	2.1	1	1	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.14	gi|257051316|ref|YP_003129149.1|	-	1.4e-07	31.2	0.1	2e-07	30.7	0.1	1.3	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
MTS	PF05175.9	gi|257051316|ref|YP_003129149.1|	-	5.5e-07	29.1	0.1	1e-06	28.2	0.1	1.4	1	1	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_3	PF01596.12	gi|257051316|ref|YP_003129149.1|	-	7.6e-07	28.3	0.0	1e-06	27.9	0.0	1.1	1	0	0	1	1	1	1	O-methyltransferase
Methyltransf_31	PF13847.1	gi|257051316|ref|YP_003129149.1|	-	2.1e-06	27.3	0.0	2.8e-06	27.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
RrnaAD	PF00398.15	gi|257051316|ref|YP_003129149.1|	-	1.2e-05	24.4	0.0	1.8e-05	23.9	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
PrmA	PF06325.8	gi|257051316|ref|YP_003129149.1|	-	1.5e-05	24.3	0.2	1.9e-05	23.9	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_23	PF13489.1	gi|257051316|ref|YP_003129149.1|	-	1.9e-05	24.4	0.0	4.2e-05	23.3	0.0	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_24	PF13578.1	gi|257051316|ref|YP_003129149.1|	-	3.3e-05	24.6	0.3	6.5e-05	23.7	0.2	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|257051316|ref|YP_003129149.1|	-	0.0011	19.4	0.2	0.0019	18.6	0.1	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
CMAS	PF02353.15	gi|257051316|ref|YP_003129149.1|	-	0.0028	16.7	0.0	0.0033	16.5	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Cons_hypoth95	PF03602.10	gi|257051316|ref|YP_003129149.1|	-	0.004	16.5	0.1	0.0064	15.9	0.0	1.4	1	1	0	1	1	1	1	Conserved	hypothetical	protein	95
Methyltransf_25	PF13649.1	gi|257051316|ref|YP_003129149.1|	-	0.0041	17.4	0.0	0.0066	16.7	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
MetW	PF07021.7	gi|257051316|ref|YP_003129149.1|	-	0.033	13.5	0.6	0.097	12.0	0.2	1.8	2	0	0	2	2	2	0	Methionine	biosynthesis	protein	MetW
UPF0020	PF01170.13	gi|257051316|ref|YP_003129149.1|	-	0.12	11.9	0.0	0.2	11.1	0.0	1.3	1	0	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
DUF1628	PF07790.6	gi|257051317|ref|YP_003129150.1|	-	7.2e-09	36.2	0.4	1.4e-08	35.3	0.0	1.7	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1628)
SprB	PF13573.1	gi|257051317|ref|YP_003129150.1|	-	0.071	12.7	0.2	0.19	11.3	0.0	1.8	2	0	0	2	2	2	0	SprB	repeat
TFIIS_C	PF01096.13	gi|257051319|ref|YP_003129152.1|	-	4.6e-17	61.3	4.3	4.6e-17	61.3	3.0	2.9	3	0	0	3	3	3	1	Transcription	factor	S-II	(TFIIS)
RNA_POL_M_15KD	PF02150.11	gi|257051319|ref|YP_003129152.1|	-	7.1e-08	32.0	0.7	7.1e-08	32.0	0.5	2.8	3	0	0	3	3	3	1	RNA	polymerases	M/15	Kd	subunit
DZR	PF12773.2	gi|257051319|ref|YP_003129152.1|	-	9.9e-06	25.2	9.8	0.00013	21.6	0.6	2.8	2	1	1	3	3	3	1	Double	zinc	ribbon
Prok-RING_1	PF14446.1	gi|257051319|ref|YP_003129152.1|	-	6.8e-05	22.5	6.7	0.00024	20.7	0.2	2.9	3	0	0	3	3	3	1	Prokaryotic	RING	finger	family	1
TF_Zn_Ribbon	PF08271.7	gi|257051319|ref|YP_003129152.1|	-	0.00018	20.7	10.0	0.005	16.1	0.3	3.4	2	2	0	2	2	2	1	TFIIB	zinc-binding
OrfB_Zn_ribbon	PF07282.6	gi|257051319|ref|YP_003129152.1|	-	0.0003	20.3	10.5	0.0068	16.0	0.6	2.5	2	1	0	2	2	2	2	Putative	transposase	DNA-binding	domain
Zn_Tnp_IS1595	PF12760.2	gi|257051319|ref|YP_003129152.1|	-	0.0039	16.9	6.9	0.017	14.9	0.5	2.7	2	1	1	3	3	3	1	Transposase	zinc-ribbon	domain
PhnA_Zn_Ribbon	PF08274.7	gi|257051319|ref|YP_003129152.1|	-	0.0057	16.4	10.9	0.18	11.6	0.4	3.1	3	0	0	3	3	3	2	PhnA	Zinc-Ribbon
DNA_RNApol_7kD	PF03604.8	gi|257051319|ref|YP_003129152.1|	-	0.061	12.8	11.4	3.6	7.1	0.2	4.1	4	0	0	4	4	4	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
DUF2387	PF09526.5	gi|257051319|ref|YP_003129152.1|	-	0.22	11.4	10.8	0.41	10.5	0.1	3.1	1	1	2	3	3	3	0	Probable	metal-binding	protein	(DUF2387)
zinc_ribbon_5	PF13719.1	gi|257051319|ref|YP_003129152.1|	-	0.32	10.5	0.2	0.32	10.5	0.1	3.4	3	1	1	4	4	4	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|257051319|ref|YP_003129152.1|	-	0.36	10.5	0.3	0.36	10.5	0.2	3.3	3	1	0	3	3	3	0	zinc-ribbon	domain
zf-ribbon_3	PF13248.1	gi|257051319|ref|YP_003129152.1|	-	0.42	9.8	12.2	3	7.1	0.3	3.7	3	1	0	4	4	4	0	zinc-ribbon	domain
zf-RING_5	PF14634.1	gi|257051319|ref|YP_003129152.1|	-	0.45	10.2	9.0	3.8	7.3	1.3	2.8	2	2	1	3	3	3	0	zinc-RING	finger	domain
zf-C4pol	PF14260.1	gi|257051319|ref|YP_003129152.1|	-	0.5	10.4	3.2	2.5	8.1	0.5	2.3	1	1	1	2	2	2	0	C4-type	zinc-finger	of	DNA	polymerase	delta
MU117	PF15474.1	gi|257051319|ref|YP_003129152.1|	-	0.5	10.8	3.9	2.2	8.8	2.7	2.0	1	1	0	1	1	1	0	Meiotically	up-regulated	gene	family
SprT-like	PF10263.4	gi|257051319|ref|YP_003129152.1|	-	0.57	9.8	2.6	3.9	7.1	1.8	2.1	1	1	0	1	1	1	0	SprT-like	family
zinc_ribbon_2	PF13240.1	gi|257051319|ref|YP_003129152.1|	-	0.57	9.7	10.5	3.2	7.3	0.1	3.5	4	0	0	4	4	3	0	zinc-ribbon	domain
HypA	PF01155.14	gi|257051319|ref|YP_003129152.1|	-	0.73	9.5	10.4	0.54	9.9	0.8	2.6	1	1	1	2	2	2	0	Hydrogenase	expression/synthesis	hypA	family
YokU	PF14122.1	gi|257051319|ref|YP_003129152.1|	-	0.88	9.3	6.6	0.18	11.5	0.7	2.6	1	1	2	3	3	3	0	YokU-like	protein
Nudix_N_2	PF14803.1	gi|257051319|ref|YP_003129152.1|	-	0.89	9.2	11.5	3.3	7.4	0.1	3.6	4	0	0	4	4	3	0	Nudix	N-terminal
Terminase_GpA	PF05876.7	gi|257051319|ref|YP_003129152.1|	-	0.94	7.7	7.0	0.15	10.3	2.5	1.4	1	1	1	2	2	2	0	Phage	terminase	large	subunit	(GpA)
zf-UBP	PF02148.14	gi|257051319|ref|YP_003129152.1|	-	0.95	9.6	10.1	2.3	8.4	1.6	2.5	2	1	0	2	2	2	0	Zn-finger	in	ubiquitin-hydrolases	and	other	protein
RRN7	PF11781.3	gi|257051319|ref|YP_003129152.1|	-	1.9	8.0	15.3	0.86	9.1	0.8	4.0	3	1	0	3	3	3	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
zinc-ribbons_6	PF07191.7	gi|257051319|ref|YP_003129152.1|	-	2.8	7.7	8.0	0.88	9.4	0.2	2.8	2	1	1	3	3	3	0	zinc-ribbons
PHD	PF00628.24	gi|257051319|ref|YP_003129152.1|	-	4	7.2	13.7	2.9	7.6	1.7	3.1	2	1	0	2	2	2	0	PHD-finger
Cytochrom_CIII	PF02085.11	gi|257051319|ref|YP_003129152.1|	-	4.6	7.3	7.5	56	3.9	3.7	2.5	1	1	1	2	2	2	0	Class	III	cytochrome	C	family
GFA	PF04828.9	gi|257051319|ref|YP_003129152.1|	-	5	7.1	11.3	15	5.5	0.2	3.5	1	1	3	4	4	4	0	Glutathione-dependent	formaldehyde-activating	enzyme
zf-DNL	PF05180.7	gi|257051319|ref|YP_003129152.1|	-	5.3	6.8	8.5	9.7	5.9	0.4	3.6	4	0	0	4	4	4	0	DNL	zinc	finger
zf-piccolo	PF05715.8	gi|257051319|ref|YP_003129152.1|	-	5.5	7.0	6.1	8.4	6.4	0.0	3.1	3	1	0	3	3	3	0	Piccolo	Zn-finger
C1_1	PF00130.17	gi|257051319|ref|YP_003129152.1|	-	7.7	6.3	11.7	0.72	9.6	1.4	2.7	2	1	0	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
DUF2318	PF10080.4	gi|257051319|ref|YP_003129152.1|	-	9.7	6.0	8.4	6.1	6.6	0.8	2.8	1	1	1	3	3	3	0	Predicted	membrane	protein	(DUF2318)
Virul_fac_BrkB	PF03631.10	gi|257051320|ref|YP_003129153.1|	-	0.44	9.8	15.7	0.66	9.2	10.7	1.4	1	1	0	1	1	1	0	Virulence	factor	BrkB
NTP_transf_2	PF01909.18	gi|257051322|ref|YP_003129155.1|	-	2.5e-09	37.3	0.0	4e-09	36.6	0.0	1.5	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
MarR_2	PF12802.2	gi|257051322|ref|YP_003129155.1|	-	0.0015	18.1	0.0	0.0055	16.3	0.0	2.0	1	0	0	1	1	1	1	MarR	family
Adenyl_cycl_N	PF12633.2	gi|257051322|ref|YP_003129155.1|	-	0.043	13.3	0.0	0.068	12.6	0.0	1.3	1	0	0	1	1	1	0	Adenylate	cyclase	NT	domain
HEPN	PF05168.9	gi|257051323|ref|YP_003129156.1|	-	0.00078	19.3	0.1	0.0011	18.7	0.1	1.2	1	0	0	1	1	1	1	HEPN	domain
DUF3572	PF12096.3	gi|257051323|ref|YP_003129156.1|	-	0.0023	17.7	0.0	2.1	8.2	0.0	2.3	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF3572)
DUF969	PF06149.7	gi|257051323|ref|YP_003129156.1|	-	0.14	11.3	0.0	0.2	10.8	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF969)
HNH	PF01844.18	gi|257051328|ref|YP_003129161.1|	-	7.1e-10	38.6	7.0	1.3e-09	37.8	4.9	1.4	1	0	0	1	1	1	1	HNH	endonuclease
HNH_2	PF13391.1	gi|257051328|ref|YP_003129161.1|	-	0.0012	18.5	1.3	0.0026	17.4	0.9	1.6	1	0	0	1	1	1	1	HNH	endonuclease
Clr5	PF14420.1	gi|257051328|ref|YP_003129161.1|	-	1.2	9.0	5.2	20	5.2	0.1	3.8	4	0	0	4	4	4	0	Clr5	domain
Helitron_like_N	PF14214.1	gi|257051329|ref|YP_003129162.1|	-	0.15	11.7	0.0	0.29	10.8	0.0	1.4	1	0	0	1	1	1	0	Helitron	helicase-like	domain	at	N-terminus
Met_10	PF02475.11	gi|257051330|ref|YP_003129163.1|	-	1.9e-59	200.6	0.1	2.4e-59	200.2	0.0	1.1	1	0	0	1	1	1	1	Met-10+	like-protein
Methyltransf_26	PF13659.1	gi|257051330|ref|YP_003129163.1|	-	3.4e-10	39.9	0.5	1e-09	38.4	0.1	2.0	2	1	0	2	2	2	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|257051330|ref|YP_003129163.1|	-	4.5e-10	40.0	1.0	2.5e-09	37.7	0.0	2.4	3	0	0	3	3	2	1	Methyltransferase	domain
Methyltransf_15	PF09445.5	gi|257051330|ref|YP_003129163.1|	-	1.2e-08	34.7	0.0	1.7e-08	34.1	0.0	1.3	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
Methyltransf_31	PF13847.1	gi|257051330|ref|YP_003129163.1|	-	4.1e-08	32.9	0.0	8e-08	32.0	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|257051330|ref|YP_003129163.1|	-	1e-07	31.5	0.0	1.9e-07	30.6	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	small	domain
UPF0020	PF01170.13	gi|257051330|ref|YP_003129163.1|	-	6.7e-05	22.5	0.0	0.00011	21.7	0.0	1.3	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
PrmA	PF06325.8	gi|257051330|ref|YP_003129163.1|	-	0.0001	21.5	0.0	0.00016	20.8	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_24	PF13578.1	gi|257051330|ref|YP_003129163.1|	-	0.00013	22.7	0.3	0.0011	19.7	0.0	2.3	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|257051330|ref|YP_003129163.1|	-	0.00026	21.2	0.0	0.00067	19.9	0.0	1.7	2	0	0	2	2	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|257051330|ref|YP_003129163.1|	-	0.0013	19.1	0.0	0.0039	17.6	0.0	1.8	1	0	0	1	1	1	1	Methyltransferase	domain
Cons_hypoth95	PF03602.10	gi|257051330|ref|YP_003129163.1|	-	0.0021	17.5	0.0	0.004	16.5	0.0	1.4	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
Methyltransf_23	PF13489.1	gi|257051330|ref|YP_003129163.1|	-	0.0037	16.9	0.0	0.0069	16.1	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
TRM	PF02005.11	gi|257051330|ref|YP_003129163.1|	-	0.024	13.5	0.0	0.032	13.1	0.0	1.2	1	0	0	1	1	1	0	N2,N2-dimethylguanosine	tRNA	methyltransferase
SRP54_N	PF02881.14	gi|257051330|ref|YP_003129163.1|	-	0.028	14.5	0.5	8.5	6.5	0.0	2.4	2	0	0	2	2	2	0	SRP54-type	protein,	helical	bundle	domain
DNA_methylase	PF00145.12	gi|257051330|ref|YP_003129163.1|	-	0.19	10.7	0.0	0.26	10.3	0.0	1.1	1	0	0	1	1	1	0	C-5	cytosine-specific	DNA	methylase
TP_methylase	PF00590.15	gi|257051331|ref|YP_003129164.1|	-	1.9e-21	76.7	0.4	2.6e-21	76.3	0.3	1.2	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
Exosortase_EpsH	PF09721.5	gi|257051332|ref|YP_003129165.1|	-	8.8e-40	136.5	18.3	1.9e-39	135.4	12.7	1.5	1	1	0	1	1	1	1	Transmembrane	exosortase	(Exosortase_EpsH)
Claudin_2	PF13903.1	gi|257051333|ref|YP_003129166.1|	-	0.084	12.5	3.6	0.095	12.3	2.5	1.0	1	0	0	1	1	1	0	PMP-22/EMP/MP20/Claudin	tight	junction
PepSY_TM_2	PF13703.1	gi|257051334|ref|YP_003129167.1|	-	7.5	6.8	8.1	0.76	9.9	0.2	2.9	1	1	3	4	4	4	0	PepSY-associated	TM	helix
Glyoxalase_2	PF12681.2	gi|257051335|ref|YP_003129168.1|	-	5e-24	84.9	4.7	5e-15	56.0	0.5	2.1	2	0	0	2	2	2	2	Glyoxalase-like	domain
Glyoxalase	PF00903.20	gi|257051335|ref|YP_003129168.1|	-	5.6e-24	84.5	4.3	4.1e-15	55.9	0.6	2.2	2	0	0	2	2	2	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_4	PF13669.1	gi|257051335|ref|YP_003129168.1|	-	2.7e-13	49.8	4.1	6.7e-07	29.3	0.8	3.8	1	1	3	4	4	4	3	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_3	PF13468.1	gi|257051335|ref|YP_003129168.1|	-	2.6e-08	33.9	0.5	0.045	13.6	0.1	3.4	2	2	0	2	2	2	2	Glyoxalase-like	domain
Glyoxalase_5	PF14696.1	gi|257051335|ref|YP_003129168.1|	-	0.028	14.3	0.0	1.7	8.5	0.0	2.7	1	1	2	3	3	3	0	Hydroxyphenylpyruvate	dioxygenase,	HPPD,	N-terminal
MMR_HSR1	PF01926.18	gi|257051338|ref|YP_003129171.1|	-	3e-21	75.5	0.0	5.8e-21	74.6	0.0	1.5	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
TGS	PF02824.16	gi|257051338|ref|YP_003129171.1|	-	1.3e-14	53.7	0.0	2.6e-14	52.7	0.0	1.5	1	0	0	1	1	1	1	TGS	domain
FeoB_N	PF02421.13	gi|257051338|ref|YP_003129171.1|	-	6e-14	51.6	0.4	5.1e-13	48.5	0.0	2.1	2	0	0	2	2	2	1	Ferrous	iron	transport	protein	B
Dynamin_N	PF00350.18	gi|257051338|ref|YP_003129171.1|	-	3.1e-06	27.1	0.7	0.079	12.7	0.0	2.6	2	1	0	3	3	2	2	Dynamin	family
ArgK	PF03308.11	gi|257051338|ref|YP_003129171.1|	-	0.0011	17.8	0.2	0.0087	14.8	0.0	2.3	2	1	0	2	2	2	1	ArgK	protein
DUF258	PF03193.11	gi|257051338|ref|YP_003129171.1|	-	0.0057	15.8	0.0	0.012	14.8	0.0	1.7	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
GTP_EFTU	PF00009.22	gi|257051338|ref|YP_003129171.1|	-	0.0085	15.5	0.0	0.66	9.3	0.0	2.9	2	1	0	2	2	2	1	Elongation	factor	Tu	GTP	binding	domain
Miro	PF08477.8	gi|257051338|ref|YP_003129171.1|	-	0.0093	16.4	0.0	0.035	14.5	0.0	2.1	2	1	0	2	2	1	1	Miro-like	protein
AAA_28	PF13521.1	gi|257051338|ref|YP_003129171.1|	-	0.023	14.6	0.1	0.059	13.3	0.0	1.7	2	0	0	2	2	1	0	AAA	domain
Arf	PF00025.16	gi|257051338|ref|YP_003129171.1|	-	0.024	13.9	0.0	1.2	8.3	0.0	2.3	2	0	0	2	2	2	0	ADP-ribosylation	factor	family
cobW	PF02492.14	gi|257051338|ref|YP_003129171.1|	-	0.027	13.9	0.2	2.6	7.4	0.0	2.5	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
ThiS	PF02597.15	gi|257051338|ref|YP_003129171.1|	-	0.051	14.0	0.7	0.25	11.7	0.0	2.4	3	1	0	3	3	2	0	ThiS	family
AAA_29	PF13555.1	gi|257051338|ref|YP_003129171.1|	-	0.051	13.1	0.1	0.13	11.7	0.1	1.7	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
ABC_tran	PF00005.22	gi|257051338|ref|YP_003129171.1|	-	0.058	13.6	0.0	0.2	11.9	0.0	1.8	2	0	0	2	2	2	0	ABC	transporter
AAA_18	PF13238.1	gi|257051338|ref|YP_003129171.1|	-	0.068	13.4	1.0	0.58	10.4	0.7	2.7	1	1	0	1	1	1	0	AAA	domain
AAA_16	PF13191.1	gi|257051338|ref|YP_003129171.1|	-	0.097	12.6	0.0	0.19	11.7	0.0	1.5	1	0	0	1	1	1	0	AAA	ATPase	domain
AIG1	PF04548.11	gi|257051338|ref|YP_003129171.1|	-	0.14	11.2	0.0	0.24	10.4	0.0	1.4	1	0	0	1	1	1	0	AIG1	family
AAA_17	PF13207.1	gi|257051338|ref|YP_003129171.1|	-	0.18	12.6	3.2	0.29	11.9	0.5	2.7	2	1	0	2	2	1	0	AAA	domain
Ribosomal_L11	PF00298.14	gi|257051340|ref|YP_003129173.1|	-	5.3e-21	74.5	0.0	8.3e-21	73.9	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L11,	RNA	binding	domain
Ribosomal_L11_N	PF03946.9	gi|257051340|ref|YP_003129173.1|	-	9.2e-17	60.2	0.5	1.4e-16	59.6	0.1	1.5	2	0	0	2	2	2	1	Ribosomal	protein	L11,	N-terminal	domain
HATPase_c	PF02518.21	gi|257051341|ref|YP_003129174.1|	-	1.6e-14	53.5	0.1	3.4e-14	52.5	0.1	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.1	gi|257051341|ref|YP_003129174.1|	-	2.3e-08	33.8	0.1	5e-08	32.7	0.1	1.6	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HAMP	PF00672.20	gi|257051341|ref|YP_003129174.1|	-	1.4e-06	28.3	0.2	1.4e-06	28.3	0.1	3.0	3	0	0	3	3	3	1	HAMP	domain
Cache_3	PF14827.1	gi|257051341|ref|YP_003129174.1|	-	0.00063	19.6	0.5	0.0026	17.6	0.0	2.3	2	0	0	2	2	2	1	Sensory	domain	of	two-component	sensor	kinase
Ribosomal_L1	PF00687.16	gi|257051342|ref|YP_003129175.1|	-	6.2e-43	146.6	0.0	7.4e-43	146.4	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L1p/L10e	family
Ribosomal_L10	PF00466.15	gi|257051343|ref|YP_003129176.1|	-	3.2e-20	71.9	0.0	5.2e-20	71.2	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L10
Ribosomal_60s	PF00428.14	gi|257051343|ref|YP_003129176.1|	-	0.053	13.9	12.4	0.16	12.3	7.4	2.6	2	0	0	2	2	2	0	60s	Acidic	ribosomal	protein
RNA_pol_3_Rpc31	PF11705.3	gi|257051343|ref|YP_003129176.1|	-	0.34	10.8	10.5	0.48	10.3	7.3	1.3	1	0	0	1	1	1	0	DNA-directed	RNA	polymerase	III	subunit	Rpc31
ISG65-75	PF11727.3	gi|257051343|ref|YP_003129176.1|	-	0.49	9.3	3.5	0.83	8.6	2.4	1.3	1	0	0	1	1	1	0	Invariant	surface	glycoprotein
Ribosomal_60s	PF00428.14	gi|257051344|ref|YP_003129177.1|	-	2.6e-09	37.3	28.0	6.6e-09	36.0	19.4	1.6	1	1	0	1	1	1	1	60s	Acidic	ribosomal	protein
CDC45	PF02724.9	gi|257051344|ref|YP_003129177.1|	-	1.8	6.4	5.1	2.2	6.2	3.5	1.0	1	0	0	1	1	1	0	CDC45-like	protein
NOA36	PF06524.7	gi|257051344|ref|YP_003129177.1|	-	2.9	7.0	7.2	3.2	6.9	5.0	1.1	1	0	0	1	1	1	0	NOA36	protein
Lactamase_B	PF00753.22	gi|257051345|ref|YP_003129178.1|	-	2.8e-18	66.2	12.8	4.9e-18	65.4	8.9	1.4	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Rhodanese	PF00581.15	gi|257051345|ref|YP_003129178.1|	-	1.7e-10	41.2	0.0	3.1e-10	40.3	0.0	1.5	1	0	0	1	1	1	1	Rhodanese-like	domain
Lactamase_B_2	PF12706.2	gi|257051345|ref|YP_003129178.1|	-	0.019	14.5	1.5	0.038	13.5	1.0	1.5	1	1	0	1	1	1	0	Beta-lactamase	superfamily	domain
DUF4341	PF14241.1	gi|257051346|ref|YP_003129179.1|	-	1.5e-12	47.0	7.7	3.6e-11	42.5	1.0	2.4	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF4341)
Sulf_transp	PF04143.9	gi|257051346|ref|YP_003129179.1|	-	8.5e-12	44.9	6.2	8.5e-12	44.9	4.3	2.9	3	0	0	3	3	3	2	Sulphur	transport
DUF4231	PF14015.1	gi|257051346|ref|YP_003129179.1|	-	1.3	9.0	5.7	1.4	8.9	0.1	2.5	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4231)
Sulf_transp	PF04143.9	gi|257051347|ref|YP_003129180.1|	-	1.3e-10	41.0	8.4	1.3e-10	41.0	5.8	3.0	3	0	0	3	3	3	2	Sulphur	transport
PetG	PF02529.10	gi|257051347|ref|YP_003129180.1|	-	0.22	11.0	0.3	0.22	11.0	0.2	2.3	2	0	0	2	2	2	0	Cytochrome	B6-F	complex	subunit	5
DUF4235	PF14019.1	gi|257051347|ref|YP_003129180.1|	-	1.6	8.6	5.0	10	6.0	0.1	3.1	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF4235)
CopD	PF05425.8	gi|257051347|ref|YP_003129180.1|	-	2.5	8.3	6.9	0.38	10.9	1.6	1.9	1	1	1	2	2	2	0	Copper	resistance	protein	D
UPF0233	PF06781.7	gi|257051347|ref|YP_003129180.1|	-	3.7	7.2	11.4	0.39	10.3	2.6	2.6	1	1	2	3	3	3	0	Uncharacterised	protein	family	(UPF0233)
PHO4	PF01384.15	gi|257051348|ref|YP_003129181.1|	-	1.6e-40	138.7	34.8	2.5e-40	138.0	24.1	1.4	1	1	0	1	1	1	1	Phosphate	transporter	family
HATPase_c	PF02518.21	gi|257051349|ref|YP_003129182.1|	-	9.7e-21	73.5	0.2	1.8e-20	72.7	0.1	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_9	PF13426.1	gi|257051349|ref|YP_003129182.1|	-	4.6e-13	49.4	0.0	1e-12	48.3	0.0	1.6	1	0	0	1	1	1	1	PAS	domain
HisKA	PF00512.20	gi|257051349|ref|YP_003129182.1|	-	1.4e-11	44.2	1.2	2.8e-11	43.2	0.2	2.1	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
PAS	PF00989.19	gi|257051349|ref|YP_003129182.1|	-	7.4e-10	38.6	0.0	1.6e-09	37.5	0.0	1.6	1	0	0	1	1	1	1	PAS	fold
PAS_4	PF08448.5	gi|257051349|ref|YP_003129182.1|	-	1.7e-09	37.6	0.1	5.4e-09	36.0	0.0	1.9	1	0	0	1	1	1	1	PAS	fold
Response_reg	PF00072.19	gi|257051349|ref|YP_003129182.1|	-	2.9e-09	36.8	0.0	7.3e-09	35.6	0.0	1.7	1	0	0	1	1	1	1	Response	regulator	receiver	domain
PAS_8	PF13188.1	gi|257051349|ref|YP_003129182.1|	-	5.8e-05	22.8	0.0	0.0002	21.1	0.0	1.9	1	0	0	1	1	1	1	PAS	domain
GAF_3	PF13492.1	gi|257051349|ref|YP_003129182.1|	-	0.0016	18.5	0.0	0.0042	17.1	0.0	1.8	1	0	0	1	1	1	1	GAF	domain
HATPase_c_3	PF13589.1	gi|257051349|ref|YP_003129182.1|	-	0.0025	17.4	0.0	0.005	16.5	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.1	gi|257051349|ref|YP_003129182.1|	-	0.016	14.9	0.0	0.038	13.7	0.0	1.6	1	0	0	1	1	1	0	Histidine	kinase-like	ATPase	domain
PAS_10	PF13596.1	gi|257051349|ref|YP_003129182.1|	-	0.029	14.6	0.0	0.08	13.2	0.0	1.7	2	0	0	2	2	1	0	PAS	domain
PAS_3	PF08447.6	gi|257051349|ref|YP_003129182.1|	-	0.077	13.0	0.0	0.19	11.8	0.0	1.7	1	0	0	1	1	1	0	PAS	fold
Usp	PF00582.21	gi|257051350|ref|YP_003129183.1|	-	4.9e-39	133.7	0.1	1.4e-22	80.3	0.0	2.1	2	0	0	2	2	2	2	Universal	stress	protein	family
TauE	PF01925.14	gi|257051352|ref|YP_003129185.1|	-	1.2e-36	126.4	25.2	1.2e-36	126.4	17.5	1.8	1	1	0	1	1	1	1	Sulfite	exporter	TauE/SafE
DPRP	PF04244.8	gi|257051353|ref|YP_003129186.1|	-	4.4e-61	206.2	0.0	8.4e-61	205.3	0.0	1.5	1	0	0	1	1	1	1	Deoxyribodipyrimidine	photo-lyase-related	protein
FAD_binding_7	PF03441.9	gi|257051353|ref|YP_003129186.1|	-	2e-11	43.6	0.1	3.5e-11	42.8	0.1	1.4	1	0	0	1	1	1	1	FAD	binding	domain	of	DNA	photolyase
MttA_Hcf106	PF02416.11	gi|257051354|ref|YP_003129187.1|	-	8.8e-13	47.1	0.0	1e-12	46.9	0.0	1.2	1	0	0	1	1	1	1	mttA/Hcf106	family
AhpC-TSA	PF00578.16	gi|257051355|ref|YP_003129188.1|	-	6.6e-32	109.8	0.0	7.7e-32	109.5	0.0	1.0	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.5	gi|257051355|ref|YP_003129188.1|	-	1.1e-23	83.4	0.0	1.2e-23	83.2	0.0	1.0	1	0	0	1	1	1	1	Redoxin
AhpC-TSA_2	PF13911.1	gi|257051355|ref|YP_003129188.1|	-	0.00076	19.3	0.0	0.0085	16.0	0.0	2.0	1	1	0	2	2	2	1	AhpC/TSA	antioxidant	enzyme
DUF3103	PF11301.3	gi|257051355|ref|YP_003129188.1|	-	0.014	14.1	0.1	0.019	13.6	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3103)
DUF899	PF05988.7	gi|257051355|ref|YP_003129188.1|	-	0.029	13.8	0.0	0.039	13.3	0.0	1.1	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF899)
HD	PF01966.17	gi|257051356|ref|YP_003129189.1|	-	2.4e-08	34.0	1.7	4.8e-08	33.0	1.2	1.6	1	0	0	1	1	1	1	HD	domain
NikR_C	PF08753.6	gi|257051357|ref|YP_003129190.1|	-	3.6e-18	65.2	0.8	5.1e-18	64.7	0.6	1.3	1	0	0	1	1	1	1	NikR	C	terminal	nickel	binding	domain
RHH_1	PF01402.16	gi|257051357|ref|YP_003129190.1|	-	2.7e-06	27.0	0.0	4.6e-06	26.2	0.0	1.4	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
Arc	PF03869.9	gi|257051357|ref|YP_003129190.1|	-	0.025	14.1	0.1	0.044	13.4	0.1	1.3	1	0	0	1	1	1	0	Arc-like	DNA	binding	domain
Tom22	PF04281.8	gi|257051358|ref|YP_003129191.1|	-	8.9	5.8	7.5	11	5.5	5.2	1.1	1	0	0	1	1	1	0	Mitochondrial	import	receptor	subunit	Tom22
SurE	PF01975.12	gi|257051359|ref|YP_003129192.1|	-	2.4e-44	151.0	0.3	3.1e-44	150.6	0.2	1.1	1	0	0	1	1	1	1	Survival	protein	SurE
Methyltransf_23	PF13489.1	gi|257051360|ref|YP_003129193.1|	-	4.4e-12	46.0	0.0	9.5e-12	44.9	0.0	1.5	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|257051360|ref|YP_003129193.1|	-	6.4e-10	39.4	0.0	1.2e-09	38.4	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|257051360|ref|YP_003129193.1|	-	1.8e-06	28.5	0.1	5.2e-06	27.0	0.0	1.8	1	0	0	1	1	1	1	Methyltransferase	domain
Rsm22	PF09243.5	gi|257051360|ref|YP_003129193.1|	-	2.8e-05	23.3	0.0	4.2e-05	22.7	0.0	1.2	1	0	0	1	1	1	1	Mitochondrial	small	ribosomal	subunit	Rsm22
Methyltransf_11	PF08241.7	gi|257051360|ref|YP_003129193.1|	-	4.3e-05	23.9	0.0	9.2e-05	22.8	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|257051360|ref|YP_003129193.1|	-	4.5e-05	23.0	0.0	8.7e-05	22.1	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|257051360|ref|YP_003129193.1|	-	0.0014	18.6	0.1	0.0031	17.5	0.1	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
GidB	PF02527.10	gi|257051360|ref|YP_003129193.1|	-	0.025	13.6	0.1	0.073	12.2	0.0	1.7	1	1	0	1	1	1	0	rRNA	small	subunit	methyltransferase	G
MetW	PF07021.7	gi|257051360|ref|YP_003129193.1|	-	0.042	13.2	0.0	0.078	12.3	0.0	1.3	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
DREV	PF05219.7	gi|257051360|ref|YP_003129193.1|	-	0.063	12.1	0.0	0.12	11.2	0.0	1.3	1	0	0	1	1	1	0	DREV	methyltransferase
PDH	PF02153.12	gi|257051361|ref|YP_003129194.1|	-	1.5e-14	53.4	0.2	1.1e-13	50.7	0.1	1.9	1	1	0	1	1	1	1	Prephenate	dehydrogenase
F420_oxidored	PF03807.12	gi|257051361|ref|YP_003129194.1|	-	0.00016	22.0	0.1	0.00032	21.0	0.1	1.5	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
GFO_IDH_MocA	PF01408.17	gi|257051361|ref|YP_003129194.1|	-	0.0026	18.2	0.9	0.0063	17.0	0.1	2.1	2	1	0	2	2	2	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Shikimate_DH	PF01488.15	gi|257051361|ref|YP_003129194.1|	-	0.0036	17.4	0.1	0.0071	16.4	0.1	1.5	1	1	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
TrkA_N	PF02254.13	gi|257051361|ref|YP_003129194.1|	-	0.0043	17.0	0.0	0.0081	16.1	0.0	1.5	1	0	0	1	1	1	1	TrkA-N	domain
Saccharop_dh	PF03435.13	gi|257051361|ref|YP_003129194.1|	-	0.01	14.8	0.2	0.014	14.4	0.1	1.2	1	0	0	1	1	1	0	Saccharopine	dehydrogenase
NAD_binding_2	PF03446.10	gi|257051361|ref|YP_003129194.1|	-	0.017	14.9	0.1	0.032	14.0	0.1	1.5	1	0	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NAD_binding_7	PF13241.1	gi|257051361|ref|YP_003129194.1|	-	0.018	15.3	0.2	0.041	14.1	0.1	1.6	1	0	0	1	1	1	0	Putative	NAD(P)-binding
3HCDH_N	PF02737.13	gi|257051361|ref|YP_003129194.1|	-	0.028	14.0	1.6	0.039	13.6	0.5	1.7	1	1	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Rossmann-like	PF10727.4	gi|257051361|ref|YP_003129194.1|	-	0.12	12.0	2.5	0.098	12.3	0.4	1.8	2	0	0	2	2	2	0	Rossmann-like	domain
ThiF	PF00899.16	gi|257051361|ref|YP_003129194.1|	-	0.13	12.0	1.5	0.18	11.5	0.2	2.0	2	1	0	2	2	2	0	ThiF	family
FAA_hydrolase	PF01557.13	gi|257051362|ref|YP_003129195.1|	-	6.1e-63	212.1	0.2	7.9e-63	211.8	0.2	1.1	1	0	0	1	1	1	1	Fumarylacetoacetate	(FAA)	hydrolase	family
Rad50_zn_hook	PF04423.9	gi|257051363|ref|YP_003129196.1|	-	0.052	13.0	0.2	0.1	12.1	0.1	1.5	1	1	0	1	1	1	0	Rad50	zinc	hook	motif
Prok-RING_4	PF14447.1	gi|257051363|ref|YP_003129196.1|	-	5	6.7	5.3	1.2	8.7	0.3	2.2	3	0	0	3	3	3	0	Prokaryotic	RING	finger	family	4
HMG-CoA_red	PF00368.13	gi|257051364|ref|YP_003129197.1|	-	5e-134	446.6	3.0	5.7e-134	446.4	2.1	1.0	1	0	0	1	1	1	1	Hydroxymethylglutaryl-coenzyme	A	reductase
Trp_oprn_chp	PF09534.5	gi|257051365|ref|YP_003129198.1|	-	6.4	6.3	8.3	9.7	5.7	5.8	1.3	1	0	0	1	1	1	0	Tryptophan-associated	transmembrane	protein	(Trp_oprn_chp)
Rrf2	PF02082.15	gi|257051367|ref|YP_003129200.1|	-	0.0098	15.9	0.1	0.027	14.5	0.0	1.7	2	0	0	2	2	2	1	Transcriptional	regulator
Cu_amine_oxidN2	PF02727.11	gi|257051367|ref|YP_003129200.1|	-	0.01	15.9	0.0	1.1	9.3	0.0	2.2	2	0	0	2	2	2	0	Copper	amine	oxidase,	N2	domain
Pex14_N	PF04695.8	gi|257051367|ref|YP_003129200.1|	-	0.063	13.3	0.0	0.1	12.6	0.0	1.3	1	0	0	1	1	1	0	Peroxisomal	membrane	anchor	protein	(Pex14p)	conserved	region
DUF4109	PF13397.1	gi|257051367|ref|YP_003129200.1|	-	0.097	13.0	0.1	1.8	9.0	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4109)
PaaX	PF07848.7	gi|257051367|ref|YP_003129200.1|	-	0.11	12.4	0.4	0.4	10.7	0.1	2.0	2	0	0	2	2	2	0	PaaX-like	protein
zinc_ribbon_5	PF13719.1	gi|257051367|ref|YP_003129200.1|	-	0.27	10.8	1.6	7	6.3	0.1	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|257051367|ref|YP_003129200.1|	-	0.4	10.4	1.7	7.8	6.2	0.1	2.5	2	0	0	2	2	2	0	zinc-ribbon	domain
Acetyltransf_1	PF00583.19	gi|257051368|ref|YP_003129201.1|	-	6.3e-17	61.3	0.6	9.8e-17	60.7	0.4	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.1	gi|257051368|ref|YP_003129201.1|	-	2e-12	47.0	0.0	2.8e-12	46.6	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.1	gi|257051368|ref|YP_003129201.1|	-	7.4e-12	45.4	0.0	9.2e-12	45.1	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.1	gi|257051368|ref|YP_003129201.1|	-	4.5e-07	29.9	0.0	6.2e-07	29.4	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.1	gi|257051368|ref|YP_003129201.1|	-	4.4e-06	26.5	0.2	1.4e-05	24.9	0.1	1.8	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|257051368|ref|YP_003129201.1|	-	1.2e-05	24.9	0.0	2.1e-05	24.2	0.0	1.4	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_5	PF13444.1	gi|257051368|ref|YP_003129201.1|	-	1.5e-05	25.4	0.2	3.5e-05	24.2	0.1	1.8	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.1	gi|257051368|ref|YP_003129201.1|	-	0.00018	21.3	0.1	0.00039	20.2	0.1	1.6	2	0	0	2	2	2	1	GCN5-related	N-acetyl-transferase
Acetyltransf_3	PF13302.1	gi|257051368|ref|YP_003129201.1|	-	0.067	13.3	0.0	0.077	13.1	0.0	1.2	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Iso_dh	PF00180.15	gi|257051369|ref|YP_003129202.1|	-	1.6e-101	339.7	0.0	2.2e-101	339.2	0.0	1.2	1	0	0	1	1	1	1	Isocitrate/isopropylmalate	dehydrogenase
Lactamase_B	PF00753.22	gi|257051370|ref|YP_003129203.1|	-	0.023	14.3	0.9	0.13	11.8	0.7	2.1	1	1	0	1	1	1	0	Metallo-beta-lactamase	superfamily
Thioredoxin_4	PF13462.1	gi|257051371|ref|YP_003129204.1|	-	2.5e-17	63.3	0.0	3.2e-17	63.0	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
DSBA	PF01323.15	gi|257051371|ref|YP_003129204.1|	-	2e-07	30.7	1.1	2.9e-07	30.2	0.1	1.8	2	0	0	2	2	2	1	DSBA-like	thioredoxin	domain
Thioredoxin_3	PF13192.1	gi|257051371|ref|YP_003129204.1|	-	0.031	14.0	0.0	0.15	11.8	0.0	2.0	2	0	0	2	2	2	0	Thioredoxin	domain
TAT_signal	PF10518.4	gi|257051371|ref|YP_003129204.1|	-	0.22	11.6	3.4	0.69	10.0	2.4	1.9	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Trm56	PF01994.11	gi|257051372|ref|YP_003129205.1|	-	2.7e-45	152.9	0.0	3.5e-45	152.6	0.0	1.1	1	0	0	1	1	1	1	tRNA	ribose	2'-O-methyltransferase,	aTrm56
TFIIE_alpha	PF02002.12	gi|257051373|ref|YP_003129206.1|	-	4.4e-20	71.1	0.0	6.9e-20	70.5	0.0	1.3	1	0	0	1	1	1	1	TFIIE	alpha	subunit
Zn-ribbon_8	PF09723.5	gi|257051373|ref|YP_003129206.1|	-	0.0013	18.6	1.3	0.0055	16.6	0.9	2.0	1	1	0	1	1	1	1	Zinc	ribbon	domain
Sigma70_r3	PF04539.11	gi|257051373|ref|YP_003129206.1|	-	0.0026	17.6	0.0	0.0055	16.5	0.0	1.6	1	0	0	1	1	1	1	Sigma-70	region	3
TF_Zn_Ribbon	PF08271.7	gi|257051373|ref|YP_003129206.1|	-	0.014	14.6	5.3	0.095	12.0	2.9	2.7	1	1	1	2	2	2	0	TFIIB	zinc-binding
Rad50_zn_hook	PF04423.9	gi|257051373|ref|YP_003129206.1|	-	0.015	14.7	0.5	0.24	10.8	0.0	2.5	3	0	0	3	3	3	0	Rad50	zinc	hook	motif
HypA	PF01155.14	gi|257051373|ref|YP_003129206.1|	-	0.017	14.8	0.1	0.026	14.2	0.1	1.3	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
zinc_ribbon_2	PF13240.1	gi|257051373|ref|YP_003129206.1|	-	0.029	13.8	0.9	1.6	8.3	0.0	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-HYPF	PF07503.7	gi|257051373|ref|YP_003129206.1|	-	0.03	13.7	0.2	2.3	7.7	0.0	2.4	2	0	0	2	2	2	0	HypF	finger
DZR	PF12773.2	gi|257051373|ref|YP_003129206.1|	-	0.036	13.8	0.1	0.066	13.0	0.1	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
PhnA_Zn_Ribbon	PF08274.7	gi|257051373|ref|YP_003129206.1|	-	0.051	13.3	1.3	2.6	7.8	0.0	2.4	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
DNA_ligase_ZBD	PF03119.11	gi|257051373|ref|YP_003129206.1|	-	0.087	12.5	0.1	0.17	11.5	0.1	1.5	1	0	0	1	1	1	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-C2H2	PF00096.21	gi|257051373|ref|YP_003129206.1|	-	0.12	12.7	0.3	14	6.2	0.0	2.3	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
zinc-ribbons_6	PF07191.7	gi|257051373|ref|YP_003129206.1|	-	0.13	12.0	0.2	0.29	10.9	0.2	1.5	1	1	0	1	1	1	0	zinc-ribbons
zinc_ribbon_5	PF13719.1	gi|257051373|ref|YP_003129206.1|	-	0.19	11.3	0.3	5.8	6.5	0.0	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-C2H2_6	PF13912.1	gi|257051373|ref|YP_003129206.1|	-	0.21	11.5	1.3	8.7	6.4	0.1	2.3	2	0	0	2	2	2	0	C2H2-type	zinc	finger
Zn_Tnp_IS1595	PF12760.2	gi|257051373|ref|YP_003129206.1|	-	0.21	11.4	1.1	1.7	8.5	0.1	2.3	1	1	2	3	3	3	0	Transposase	zinc-ribbon	domain
TFIIS_C	PF01096.13	gi|257051373|ref|YP_003129206.1|	-	0.25	10.9	1.0	9.1	6.0	0.1	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zf-Mss51	PF13824.1	gi|257051373|ref|YP_003129206.1|	-	0.99	9.3	4.0	8	6.4	1.7	2.7	1	1	2	3	3	3	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
DUF1610	PF07754.6	gi|257051373|ref|YP_003129206.1|	-	2.3	8.4	6.4	6.7	6.9	0.2	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
DUF2110	PF09883.4	gi|257051374|ref|YP_003129207.1|	-	7.4e-86	287.4	0.0	8.8e-86	287.1	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2110)
MoCF_biosynth	PF00994.19	gi|257051376|ref|YP_003129209.1|	-	2.9e-36	124.0	0.9	4.1e-36	123.5	0.3	1.4	2	0	0	2	2	2	1	Probable	molybdopterin	binding	domain
CTDII	PF01556.13	gi|257051378|ref|YP_003129211.1|	-	8.1e-34	115.3	0.0	7.5e-26	89.8	0.0	2.6	3	0	0	3	3	3	2	DnaJ	C	terminal	domain
DnaJ	PF00226.26	gi|257051378|ref|YP_003129211.1|	-	3.2e-23	81.2	4.5	4.9e-23	80.6	2.6	1.7	2	0	0	2	2	2	1	DnaJ	domain
DnaJ_CXXCXGXG	PF00684.14	gi|257051378|ref|YP_003129211.1|	-	6.1e-15	55.0	15.4	1.1e-14	54.1	10.7	1.5	1	0	0	1	1	1	1	DnaJ	central	domain
A2L_zn_ribbon	PF08792.5	gi|257051378|ref|YP_003129211.1|	-	0.00013	21.3	7.1	0.036	13.5	0.1	3.3	2	1	1	3	3	3	2	A2L	zinc	ribbon	domain
RPT	PF13446.1	gi|257051378|ref|YP_003129211.1|	-	0.005	16.2	0.3	0.02	14.2	0.1	1.9	2	0	0	2	2	2	1	A	repeated	domain	in	UCH-protein
DZR	PF12773.2	gi|257051378|ref|YP_003129211.1|	-	0.12	12.1	11.5	0.39	10.5	8.0	1.8	1	1	1	2	2	2	0	Double	zinc	ribbon
DUF3353	PF11833.3	gi|257051378|ref|YP_003129211.1|	-	0.4	10.1	2.1	0.6	9.5	0.8	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3353)
Cytochrom_c3_2	PF14537.1	gi|257051378|ref|YP_003129211.1|	-	3.8	7.9	7.8	0.71	10.2	3.0	1.6	2	0	0	2	2	2	0	Cytochrome	c3
GRP	PF07172.6	gi|257051378|ref|YP_003129211.1|	-	6.3	7.3	17.4	0.6	10.6	8.5	2.0	2	0	0	2	2	2	0	Glycine	rich	protein	family
HhH-GPD	PF00730.20	gi|257051379|ref|YP_003129212.1|	-	3.4e-16	59.4	0.0	4.6e-16	59.0	0.0	1.1	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH_5	PF14520.1	gi|257051379|ref|YP_003129212.1|	-	0.00024	21.1	0.0	0.0027	17.8	0.0	2.2	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
HHH	PF00633.18	gi|257051379|ref|YP_003129212.1|	-	0.068	12.9	0.0	0.16	11.6	0.0	1.6	1	0	0	1	1	1	0	Helix-hairpin-helix	motif
Hexapep	PF00132.19	gi|257051380|ref|YP_003129213.1|	-	8.5e-13	47.1	6.6	8.5e-08	31.3	0.4	3.2	2	1	1	3	3	3	2	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.1	gi|257051380|ref|YP_003129213.1|	-	7.5e-05	22.1	1.0	7.5e-05	22.1	0.7	2.8	2	1	0	2	2	2	1	Hexapeptide	repeat	of	succinyl-transferase
SATase_N	PF06426.9	gi|257051380|ref|YP_003129213.1|	-	0.018	15.2	0.0	0.033	14.4	0.0	1.4	1	0	0	1	1	1	0	Serine	acetyltransferase,	N-terminal
ECH	PF00378.15	gi|257051381|ref|YP_003129214.1|	-	8.7e-64	214.9	0.1	9.8e-64	214.8	0.1	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase	family
Pro_CA	PF00484.14	gi|257051382|ref|YP_003129215.1|	-	2e-27	96.1	0.0	2.6e-27	95.7	0.0	1.1	1	0	0	1	1	1	1	Carbonic	anhydrase
HTH_24	PF13412.1	gi|257051383|ref|YP_003129216.1|	-	1.8e-14	52.8	0.2	2.6e-14	52.3	0.1	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.1	gi|257051383|ref|YP_003129216.1|	-	2.6e-13	49.2	0.8	5.5e-13	48.2	0.5	1.6	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.7	gi|257051383|ref|YP_003129216.1|	-	8e-07	28.6	0.1	1.4e-06	27.8	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
Sigma70_r4_2	PF08281.7	gi|257051383|ref|YP_003129216.1|	-	6.1e-06	25.5	0.1	1.1e-05	24.7	0.1	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_IclR	PF09339.5	gi|257051383|ref|YP_003129216.1|	-	1.3e-05	24.6	0.0	2.3e-05	23.8	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_27	PF13463.1	gi|257051383|ref|YP_003129216.1|	-	1.8e-05	24.9	0.4	0.00028	21.1	0.0	2.1	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
MarR_2	PF12802.2	gi|257051383|ref|YP_003129216.1|	-	5.1e-05	22.8	0.0	0.0001	21.9	0.0	1.5	1	0	0	1	1	1	1	MarR	family
Fe_dep_repress	PF01325.14	gi|257051383|ref|YP_003129216.1|	-	0.00012	21.9	0.0	0.00024	20.9	0.0	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_DeoR	PF08220.7	gi|257051383|ref|YP_003129216.1|	-	0.00013	21.3	0.2	0.0052	16.3	0.1	2.3	2	0	0	2	2	2	1	DeoR-like	helix-turn-helix	domain
Rrf2	PF02082.15	gi|257051383|ref|YP_003129216.1|	-	0.00017	21.6	0.0	0.00041	20.4	0.0	1.6	2	0	0	2	2	1	1	Transcriptional	regulator
HTH_Tnp_ISL3	PF13542.1	gi|257051383|ref|YP_003129216.1|	-	0.00039	19.5	0.1	0.00087	18.4	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_20	PF12840.2	gi|257051383|ref|YP_003129216.1|	-	0.00054	19.7	0.0	0.0012	18.6	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_23	PF13384.1	gi|257051383|ref|YP_003129216.1|	-	0.0013	18.3	0.1	0.0027	17.3	0.0	1.5	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_5	PF01022.15	gi|257051383|ref|YP_003129216.1|	-	0.0024	17.4	0.0	0.0039	16.8	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_Mga	PF08280.6	gi|257051383|ref|YP_003129216.1|	-	0.004	16.8	0.0	0.0058	16.3	0.0	1.3	1	0	0	1	1	1	1	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
HTH_28	PF13518.1	gi|257051383|ref|YP_003129216.1|	-	0.0042	17.0	0.0	0.0077	16.2	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
KorB	PF08535.5	gi|257051383|ref|YP_003129216.1|	-	0.01	15.9	0.0	0.019	15.1	0.0	1.4	1	0	0	1	1	1	0	KorB	domain
HTH_38	PF13936.1	gi|257051383|ref|YP_003129216.1|	-	0.012	15.1	0.2	0.025	14.1	0.1	1.6	2	0	0	2	2	1	0	Helix-turn-helix	domain
GntR	PF00392.16	gi|257051383|ref|YP_003129216.1|	-	0.023	14.1	0.0	0.059	12.8	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
TrmB	PF01978.14	gi|257051383|ref|YP_003129216.1|	-	0.023	14.3	0.0	0.057	13.1	0.0	1.7	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_10	PF04967.7	gi|257051383|ref|YP_003129216.1|	-	0.029	13.9	0.1	0.05	13.1	0.1	1.4	1	0	0	1	1	1	0	HTH	DNA	binding	domain
MarR	PF01047.17	gi|257051383|ref|YP_003129216.1|	-	0.029	14.0	0.0	0.08	12.6	0.0	1.7	2	0	0	2	2	2	0	MarR	family
HTH_36	PF13730.1	gi|257051383|ref|YP_003129216.1|	-	0.04	14.0	0.0	0.074	13.1	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_1	PF00126.22	gi|257051383|ref|YP_003129216.1|	-	0.045	13.4	0.1	0.083	12.6	0.1	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_30	PF13556.1	gi|257051383|ref|YP_003129216.1|	-	0.071	12.7	0.1	0.17	11.5	0.0	1.5	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
HTH_3	PF01381.17	gi|257051383|ref|YP_003129216.1|	-	0.071	12.9	0.1	0.15	11.9	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix
Phage_pRha	PF09669.5	gi|257051383|ref|YP_003129216.1|	-	0.074	13.4	0.0	0.11	12.8	0.0	1.3	1	0	0	1	1	1	0	Phage	regulatory	protein	Rha	(Phage_pRha)
HTH_29	PF13551.1	gi|257051383|ref|YP_003129216.1|	-	0.11	12.7	0.0	0.16	12.1	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_12	PF08461.5	gi|257051383|ref|YP_003129216.1|	-	0.13	12.0	0.3	0.46	10.2	0.2	2.1	1	1	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
Oxidored_q1	PF00361.15	gi|257051384|ref|YP_003129217.1|	-	4.5e-33	114.6	6.7	8.8e-33	113.7	4.6	1.5	1	0	0	1	1	1	1	NADH-Ubiquinone/plastoquinone	(complex	I),	various	chains
Oxidored_q1_N	PF00662.15	gi|257051384|ref|YP_003129217.1|	-	4.9e-07	29.2	0.2	1.6e-06	27.5	0.1	1.9	1	0	0	1	1	1	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
DUF2309	PF10070.4	gi|257051385|ref|YP_003129218.1|	-	3.5e-252	839.0	0.0	6.8e-252	838.0	0.0	1.4	1	1	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2309)
Hexapep	PF00132.19	gi|257051386|ref|YP_003129219.1|	-	4e-09	35.5	3.3	1.1e-07	31.0	0.1	3.4	4	0	0	4	4	4	1	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.1	gi|257051386|ref|YP_003129219.1|	-	2.8e-08	33.1	2.1	2.7e-06	26.8	0.1	3.1	3	0	0	3	3	3	2	Hexapeptide	repeat	of	succinyl-transferase
MS_channel	PF00924.13	gi|257051387|ref|YP_003129220.1|	-	1.5e-16	60.3	0.5	1.5e-16	60.3	0.4	2.5	2	1	0	3	3	3	1	Mechanosensitive	ion	channel
TM_helix	PF05552.7	gi|257051387|ref|YP_003129220.1|	-	3.4e-05	23.4	6.9	0.029	14.0	0.0	2.9	3	0	0	3	3	3	2	Conserved	TM	helix
DisA_N	PF02457.11	gi|257051388|ref|YP_003129221.1|	-	7.1e-26	89.7	0.0	1.1e-25	89.1	0.0	1.3	1	0	0	1	1	1	1	DisA	bacterial	checkpoint	controller	nucleotide-binding
Cellulase	PF00150.13	gi|257051389|ref|YP_003129222.1|	-	3.9e-26	91.8	0.7	5.3e-26	91.4	0.5	1.2	1	0	0	1	1	1	1	Cellulase	(glycosyl	hydrolase	family	5)
TAT_signal	PF10518.4	gi|257051389|ref|YP_003129222.1|	-	0.0043	16.9	2.7	0.0095	15.8	1.9	1.6	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
TrmB	PF01978.14	gi|257051391|ref|YP_003129224.1|	-	0.0019	17.8	0.0	0.0026	17.4	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|257051391|ref|YP_003129224.1|	-	0.029	14.0	0.0	0.047	13.3	0.0	1.3	1	0	0	1	1	1	0	MarR	family
HTH_11	PF08279.7	gi|257051391|ref|YP_003129224.1|	-	0.039	13.6	0.0	0.068	12.8	0.0	1.4	1	0	0	1	1	1	0	HTH	domain
HTH_20	PF12840.2	gi|257051391|ref|YP_003129224.1|	-	0.079	12.7	0.0	0.13	12.0	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_3	PF01381.17	gi|257051391|ref|YP_003129224.1|	-	0.092	12.6	0.0	0.25	11.1	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix
HTH_Crp_2	PF13545.1	gi|257051391|ref|YP_003129224.1|	-	0.13	12.0	0.0	0.19	11.5	0.0	1.4	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
COX3	PF00510.13	gi|257051392|ref|YP_003129225.1|	-	1.1e-37	129.9	14.1	1.6e-37	129.3	9.8	1.2	1	0	0	1	1	1	1	Cytochrome	c	oxidase	subunit	III
DUF420	PF04238.7	gi|257051392|ref|YP_003129225.1|	-	0.011	15.6	9.6	0.023	14.6	6.7	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF420)
zf-C2H2	PF00096.21	gi|257051394|ref|YP_003129227.1|	-	0.037	14.3	0.1	0.057	13.7	0.1	1.3	1	0	0	1	1	1	0	Zinc	finger,	C2H2	type
zf-RING_3	PF14369.1	gi|257051394|ref|YP_003129227.1|	-	0.063	13.2	0.1	0.1	12.5	0.1	1.4	1	0	0	1	1	1	0	zinc-finger
zf-C2H2_4	PF13894.1	gi|257051394|ref|YP_003129227.1|	-	0.093	13.1	0.4	0.14	12.5	0.2	1.3	1	0	0	1	1	1	0	C2H2-type	zinc	finger
FYDLN_acid	PF09538.5	gi|257051394|ref|YP_003129227.1|	-	0.1	13.1	0.0	0.13	12.8	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(FYDLN_acid)
ResIII	PF04851.10	gi|257051395|ref|YP_003129228.1|	-	1.2e-25	90.4	0.0	9.7e-24	84.2	0.0	2.8	2	1	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.26	gi|257051395|ref|YP_003129228.1|	-	7.9e-15	54.4	0.1	2.1e-14	53.1	0.0	1.9	1	1	0	1	1	1	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.24	gi|257051395|ref|YP_003129228.1|	-	2e-10	40.4	0.0	1.5e-09	37.5	0.0	2.3	2	1	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C_2	PF13307.1	gi|257051395|ref|YP_003129228.1|	-	0.0014	18.5	0.0	0.2	11.5	0.0	3.1	3	0	0	3	3	3	1	Helicase	C-terminal	domain
AAA_19	PF13245.1	gi|257051395|ref|YP_003129228.1|	-	0.011	15.4	0.1	1.6	8.4	0.0	3.1	2	1	0	2	2	2	0	Part	of	AAA	domain
AAA_22	PF13401.1	gi|257051395|ref|YP_003129228.1|	-	0.042	13.9	0.0	0.2	11.7	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
GrpE	PF01025.14	gi|257051396|ref|YP_003129229.1|	-	5.4e-40	136.6	14.0	3.1e-39	134.1	9.7	1.9	1	1	0	1	1	1	1	GrpE
Med9	PF07544.8	gi|257051396|ref|YP_003129229.1|	-	0.00049	19.7	4.2	0.0015	18.2	3.0	1.9	1	1	0	1	1	1	1	RNA	polymerase	II	transcription	mediator	complex	subunit	9
DUF148	PF02520.12	gi|257051396|ref|YP_003129229.1|	-	0.012	15.4	1.6	0.012	15.4	1.1	2.1	1	1	2	3	3	3	0	Domain	of	unknown	function	DUF148
TMF_DNA_bd	PF12329.3	gi|257051396|ref|YP_003129229.1|	-	0.013	15.2	18.2	0.026	14.3	10.3	2.9	1	1	1	2	2	2	0	TATA	element	modulatory	factor	1	DNA	binding
DUF327	PF03885.8	gi|257051396|ref|YP_003129229.1|	-	0.014	15.1	6.4	0.016	15.0	3.5	1.7	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF327)
Reo_sigmaC	PF04582.7	gi|257051396|ref|YP_003129229.1|	-	0.018	14.2	0.1	0.031	13.4	0.1	1.4	1	1	0	1	1	1	0	Reovirus	sigma	C	capsid	protein
DUF641	PF04859.7	gi|257051396|ref|YP_003129229.1|	-	0.022	14.5	4.8	0.032	13.9	2.9	1.6	1	1	0	1	1	1	0	Plant	protein	of	unknown	function	(DUF641)
DUF1672	PF07901.6	gi|257051396|ref|YP_003129229.1|	-	0.027	13.4	2.1	0.039	12.9	1.4	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1672)
DUF3373	PF11853.3	gi|257051396|ref|YP_003129229.1|	-	0.03	12.8	0.7	0.03	12.8	0.5	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3373)
Atg14	PF10186.4	gi|257051396|ref|YP_003129229.1|	-	0.035	13.0	10.5	0.047	12.6	7.3	1.2	1	0	0	1	1	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
Spc7	PF08317.6	gi|257051396|ref|YP_003129229.1|	-	0.066	11.8	11.7	0.067	11.8	7.2	1.4	1	1	0	1	1	1	0	Spc7	kinetochore	protein
Rabaptin	PF03528.10	gi|257051396|ref|YP_003129229.1|	-	0.091	12.6	13.7	15	5.5	8.8	2.5	1	1	0	2	2	2	0	Rabaptin
DUF2077	PF09850.4	gi|257051396|ref|YP_003129229.1|	-	0.1	11.9	0.2	0.1	11.9	0.2	2.9	1	1	2	3	3	3	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2077)
AAA_13	PF13166.1	gi|257051396|ref|YP_003129229.1|	-	0.24	9.7	6.8	0.33	9.3	4.7	1.2	1	0	0	1	1	1	0	AAA	domain
TMCO5	PF14992.1	gi|257051396|ref|YP_003129229.1|	-	0.29	10.2	15.1	0.44	9.6	10.5	1.3	1	0	0	1	1	1	0	TMCO5	family
Troponin	PF00992.15	gi|257051396|ref|YP_003129229.1|	-	0.34	10.9	17.7	0.57	10.2	12.1	1.5	1	1	0	1	1	1	0	Troponin
TarH	PF02203.10	gi|257051396|ref|YP_003129229.1|	-	0.47	10.2	10.6	2.1	8.1	7.3	2.0	1	1	0	1	1	1	0	Tar	ligand	binding	domain	homologue
APG6	PF04111.7	gi|257051396|ref|YP_003129229.1|	-	0.48	9.4	12.5	0.67	8.9	8.7	1.3	1	0	0	1	1	1	0	Autophagy	protein	Apg6
CMS1	PF14617.1	gi|257051396|ref|YP_003129229.1|	-	0.49	9.4	12.9	0.092	11.8	4.6	2.0	1	1	1	2	2	2	0	U3-containing	90S	pre-ribosomal	complex	subunit
TBPIP	PF07106.8	gi|257051396|ref|YP_003129229.1|	-	0.53	9.8	13.7	0.48	9.9	8.4	1.7	1	1	1	2	2	2	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
Prefoldin_2	PF01920.15	gi|257051396|ref|YP_003129229.1|	-	0.57	9.9	12.3	0.24	11.1	5.1	2.7	1	1	1	2	2	2	0	Prefoldin	subunit
IncA	PF04156.9	gi|257051396|ref|YP_003129229.1|	-	0.57	9.7	19.0	1.5	8.3	13.2	1.7	1	1	0	1	1	1	0	IncA	protein
Fib_alpha	PF08702.5	gi|257051396|ref|YP_003129229.1|	-	0.6	10.2	6.6	1.1	9.3	3.2	2.1	1	1	1	2	2	2	0	Fibrinogen	alpha/beta	chain	family
CDC37_N	PF03234.9	gi|257051396|ref|YP_003129229.1|	-	0.63	10.3	13.9	0.83	9.9	1.2	2.0	1	1	1	2	2	2	0	Cdc37	N	terminal	kinase	binding
ADIP	PF11559.3	gi|257051396|ref|YP_003129229.1|	-	0.91	9.4	12.4	0.54	10.1	7.4	1.6	2	0	0	2	2	1	0	Afadin-	and	alpha	-actinin-Binding
SlyX	PF04102.7	gi|257051396|ref|YP_003129229.1|	-	1.2	9.5	10.1	0.45	10.9	3.2	2.9	1	1	3	4	4	4	0	SlyX
FUSC	PF04632.7	gi|257051396|ref|YP_003129229.1|	-	1.3	7.3	6.5	1.8	6.8	4.5	1.3	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
DUF2968	PF11180.3	gi|257051396|ref|YP_003129229.1|	-	1.5	8.1	11.0	1.9	7.7	7.0	1.8	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2968)
TMPIT	PF07851.8	gi|257051396|ref|YP_003129229.1|	-	1.8	7.5	3.5	2.2	7.2	2.4	1.2	1	0	0	1	1	1	0	TMPIT-like	protein
Sipho_Gp157	PF05565.6	gi|257051396|ref|YP_003129229.1|	-	2.1	7.9	13.4	0.55	9.7	6.6	2.0	2	1	0	2	2	2	0	Siphovirus	Gp157
OmpH	PF03938.9	gi|257051396|ref|YP_003129229.1|	-	2.4	8.0	16.3	0.13	12.1	6.4	1.8	1	1	1	2	2	2	0	Outer	membrane	protein	(OmpH-like)
DUF3807	PF12720.2	gi|257051396|ref|YP_003129229.1|	-	2.7	8.1	14.4	7.6	6.6	9.9	1.8	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3807)
DUF4407	PF14362.1	gi|257051396|ref|YP_003129229.1|	-	2.8	6.8	10.9	4.4	6.1	7.6	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
CorA	PF01544.13	gi|257051396|ref|YP_003129229.1|	-	3.2	6.7	11.1	4.6	6.1	7.7	1.3	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
Peptidase_S49_N	PF08496.5	gi|257051396|ref|YP_003129229.1|	-	3.5	7.4	9.8	16	5.2	6.8	2.0	1	1	0	1	1	1	0	Peptidase	family	S49	N-terminal
DUF4279	PF14106.1	gi|257051396|ref|YP_003129229.1|	-	4.4	7.2	7.6	3.5	7.5	0.4	2.9	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4279)
Macoilin	PF09726.4	gi|257051396|ref|YP_003129229.1|	-	6.5	4.8	9.3	8.3	4.5	6.4	1.2	1	0	0	1	1	1	0	Transmembrane	protein
Bap31	PF05529.7	gi|257051396|ref|YP_003129229.1|	-	7.7	5.9	9.8	6.1	6.2	5.0	2.0	1	1	1	2	2	2	0	B-cell	receptor-associated	protein	31-like
HSP70	PF00012.15	gi|257051397|ref|YP_003129230.1|	-	1.3e-241	802.7	17.4	8.2e-212	704.3	9.6	2.0	1	1	1	2	2	2	2	Hsp70	protein
MreB_Mbl	PF06723.8	gi|257051397|ref|YP_003129230.1|	-	9.2e-19	67.1	0.2	9.2e-19	67.1	0.1	2.1	2	0	0	2	2	2	1	MreB/Mbl	protein
FGGY_C	PF02782.11	gi|257051397|ref|YP_003129230.1|	-	0.0008	19.0	0.0	0.0023	17.5	0.0	1.8	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	C-terminal	domain
FtsA	PF14450.1	gi|257051397|ref|YP_003129230.1|	-	0.0035	17.1	0.0	2.6	7.9	0.0	3.9	2	1	0	2	2	2	1	Cell	division	protein	FtsA
StbA	PF06406.6	gi|257051397|ref|YP_003129230.1|	-	0.0073	15.2	0.1	0.1	11.5	0.0	2.5	2	1	0	3	3	3	1	StbA	protein
FIVAR	PF07554.8	gi|257051397|ref|YP_003129230.1|	-	0.09	13.0	3.9	5.8	7.2	0.4	3.3	1	1	1	2	2	2	0	Uncharacterised	Sugar-binding	Domain
Hydantoinase_A	PF01968.13	gi|257051397|ref|YP_003129230.1|	-	0.22	10.5	8.8	0.33	10.0	0.0	3.8	4	0	0	4	4	4	0	Hydantoinase/oxoprolinase
Aldo_ket_red	PF00248.16	gi|257051398|ref|YP_003129231.1|	-	4.3e-64	216.0	0.0	5.3e-64	215.7	0.0	1.1	1	0	0	1	1	1	1	Aldo/keto	reductase	family
Radical_SAM	PF04055.16	gi|257051398|ref|YP_003129231.1|	-	0.024	14.8	0.1	0.16	12.1	0.0	2.2	2	0	0	2	2	2	0	Radical	SAM	superfamily
PhoU	PF01895.14	gi|257051399|ref|YP_003129232.1|	-	2.7e-14	53.3	5.2	1e-10	41.8	0.1	2.3	2	0	0	2	2	2	2	PhoU	domain
Antitoxin-MazE	PF04014.13	gi|257051399|ref|YP_003129232.1|	-	0.00015	21.4	0.0	0.00031	20.3	0.0	1.5	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
Inositol_P	PF00459.20	gi|257051399|ref|YP_003129232.1|	-	0.014	14.7	0.6	0.05	12.9	0.3	1.8	2	0	0	2	2	2	0	Inositol	monophosphatase	family
HATPase_c	PF02518.21	gi|257051400|ref|YP_003129233.1|	-	3e-20	71.9	0.0	9.5e-20	70.3	0.0	1.8	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.20	gi|257051400|ref|YP_003129233.1|	-	1.2e-11	44.3	0.3	2.6e-11	43.3	0.2	1.6	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_4	PF08448.5	gi|257051400|ref|YP_003129233.1|	-	0.0002	21.3	2.9	0.00063	19.7	0.2	3.1	3	1	0	3	3	3	1	PAS	fold
HATPase_c_3	PF13589.1	gi|257051400|ref|YP_003129233.1|	-	0.0025	17.4	0.0	0.0052	16.4	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_9	PF13426.1	gi|257051400|ref|YP_003129233.1|	-	0.011	16.0	0.0	0.025	14.9	0.0	1.6	1	0	0	1	1	1	0	PAS	domain
PAS	PF00989.19	gi|257051400|ref|YP_003129233.1|	-	0.092	12.5	0.0	0.75	9.5	0.0	2.3	2	0	0	2	2	2	0	PAS	fold
ABC_tran	PF00005.22	gi|257051401|ref|YP_003129234.1|	-	7.3e-21	74.9	0.0	4.6e-10	39.9	0.0	4.4	3	2	0	3	3	3	3	ABC	transporter
SMC_N	PF02463.14	gi|257051401|ref|YP_003129234.1|	-	3.3e-11	42.8	0.0	0.28	10.3	0.0	4.1	3	1	0	4	4	4	4	RecF/RecN/SMC	N	terminal	domain
AAA_21	PF13304.1	gi|257051401|ref|YP_003129234.1|	-	2.6e-09	37.4	5.5	0.0075	16.2	0.0	4.2	4	0	0	4	4	4	3	AAA	domain
AAA_29	PF13555.1	gi|257051401|ref|YP_003129234.1|	-	1.3e-08	34.2	0.0	0.0011	18.5	0.0	2.5	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
AAA_25	PF13481.1	gi|257051401|ref|YP_003129234.1|	-	1.5e-06	27.7	0.0	0.061	12.7	0.0	3.1	4	0	0	4	4	2	2	AAA	domain
AAA_16	PF13191.1	gi|257051401|ref|YP_003129234.1|	-	4.7e-06	26.7	0.1	0.15	12.0	0.0	3.4	3	0	0	3	3	3	2	AAA	ATPase	domain
AAA_22	PF13401.1	gi|257051401|ref|YP_003129234.1|	-	7.3e-06	26.1	0.3	0.17	12.0	0.0	3.6	4	0	0	4	4	4	2	AAA	domain
AAA_23	PF13476.1	gi|257051401|ref|YP_003129234.1|	-	2.5e-05	24.7	0.0	0.069	13.4	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
DnaJ_CXXCXGXG	PF00684.14	gi|257051401|ref|YP_003129234.1|	-	3.7e-05	23.6	13.6	0.0017	18.3	0.9	3.6	4	0	0	4	4	3	2	DnaJ	central	domain
KaiC	PF06745.8	gi|257051401|ref|YP_003129234.1|	-	0.0001	21.4	0.1	0.069	12.2	0.0	2.7	3	0	0	3	3	3	1	KaiC
AAA_10	PF12846.2	gi|257051401|ref|YP_003129234.1|	-	0.00016	21.2	0.1	0.1	11.9	0.0	2.7	2	0	0	2	2	2	1	AAA-like	domain
DUF258	PF03193.11	gi|257051401|ref|YP_003129234.1|	-	0.00024	20.3	0.1	0.65	9.1	0.0	2.3	2	0	0	2	2	2	2	Protein	of	unknown	function,	DUF258
AAA_14	PF13173.1	gi|257051401|ref|YP_003129234.1|	-	0.00025	20.9	0.0	0.72	9.7	0.0	3.0	3	0	0	3	3	3	2	AAA	domain
AAA_33	PF13671.1	gi|257051401|ref|YP_003129234.1|	-	0.00037	20.4	0.0	1.1	9.0	0.0	3.2	3	0	0	3	3	3	2	AAA	domain
AAA_18	PF13238.1	gi|257051401|ref|YP_003129234.1|	-	0.00098	19.4	0.0	1.6	9.0	0.0	3.0	2	0	0	2	2	2	1	AAA	domain
AAA_17	PF13207.1	gi|257051401|ref|YP_003129234.1|	-	0.0024	18.6	9.1	0.69	10.7	0.0	4.7	5	0	0	5	5	5	2	AAA	domain
AAA_15	PF13175.1	gi|257051401|ref|YP_003129234.1|	-	0.0046	16.0	0.0	0.6	9.0	0.0	2.9	4	0	0	4	4	4	1	AAA	ATPase	domain
Zn-ribbon_8	PF09723.5	gi|257051401|ref|YP_003129234.1|	-	0.005	16.7	15.6	1.1	9.2	0.4	4.4	4	0	0	4	4	4	1	Zinc	ribbon	domain
APS_kinase	PF01583.15	gi|257051401|ref|YP_003129234.1|	-	0.0084	15.7	0.1	4.6	6.8	0.0	2.6	2	0	0	2	2	2	1	Adenylylsulphate	kinase
DUF2075	PF09848.4	gi|257051401|ref|YP_003129234.1|	-	0.013	14.4	0.1	3.4	6.5	0.0	2.2	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
NACHT	PF05729.7	gi|257051401|ref|YP_003129234.1|	-	0.018	14.7	0.0	1.1	8.9	0.0	2.4	2	0	0	2	2	2	0	NACHT	domain
cobW	PF02492.14	gi|257051401|ref|YP_003129234.1|	-	0.019	14.4	0.2	1.9	7.8	0.0	2.6	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
Viral_helicase1	PF01443.13	gi|257051401|ref|YP_003129234.1|	-	0.035	13.6	0.0	1.2	8.6	0.0	2.3	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
AAA_19	PF13245.1	gi|257051401|ref|YP_003129234.1|	-	0.035	13.8	0.1	16	5.2	0.0	2.9	2	0	0	2	2	2	0	Part	of	AAA	domain
RNA_helicase	PF00910.17	gi|257051401|ref|YP_003129234.1|	-	0.036	14.2	0.0	1.3	9.2	0.0	2.3	2	0	0	2	2	2	0	RNA	helicase
MobB	PF03205.9	gi|257051401|ref|YP_003129234.1|	-	0.042	13.5	0.2	1.8	8.2	0.0	2.7	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
MMR_HSR1	PF01926.18	gi|257051401|ref|YP_003129234.1|	-	0.048	13.6	0.1	5.1	7.0	0.0	3.3	3	0	0	3	3	3	0	50S	ribosome-binding	GTPase
Arch_ATPase	PF01637.13	gi|257051401|ref|YP_003129234.1|	-	0.059	13.0	0.0	6	6.4	0.0	2.3	2	0	0	2	2	2	0	Archaeal	ATPase
Miro	PF08477.8	gi|257051401|ref|YP_003129234.1|	-	0.19	12.2	0.1	23	5.5	0.0	2.6	2	0	0	2	2	2	0	Miro-like	protein
Zn_Tnp_IS91	PF14319.1	gi|257051401|ref|YP_003129234.1|	-	3	7.3	0.0	3	7.3	0.0	2.8	4	0	0	4	4	4	0	Transposase	zinc-binding	domain
Sgf11	PF08209.6	gi|257051401|ref|YP_003129234.1|	-	4.4	6.7	7.4	6	6.2	0.1	3.6	3	0	0	3	3	3	0	Sgf11	(transcriptional	regulation	protein)
Bac_rhodopsin	PF01036.13	gi|257051402|ref|YP_003129235.1|	-	1.1e-62	211.2	16.6	1.2e-62	211.1	11.5	1.0	1	0	0	1	1	1	1	Bacteriorhodopsin-like	protein
DUF1673	PF07895.6	gi|257051402|ref|YP_003129235.1|	-	0.019	14.4	3.3	0.059	12.9	0.6	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1673)
DUF21	PF01595.15	gi|257051402|ref|YP_003129235.1|	-	0.73	9.0	11.9	0.022	14.0	3.7	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	DUF21
DUF4131	PF13567.1	gi|257051402|ref|YP_003129235.1|	-	2.7	7.3	9.9	1.9	7.8	2.2	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4131)
DUF3382	PF11862.3	gi|257051402|ref|YP_003129235.1|	-	4.8	7.1	9.7	0.32	10.9	2.3	2.2	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF3382)
Colicin	PF01024.14	gi|257051403|ref|YP_003129236.1|	-	0.53	9.8	4.1	1.7	8.1	0.1	2.3	2	0	0	2	2	2	0	Colicin	pore	forming	domain
PAS_9	PF13426.1	gi|257051404|ref|YP_003129237.1|	-	3.3e-24	85.2	0.2	2.5e-23	82.4	0.1	2.3	2	0	0	2	2	2	1	PAS	domain
HTH_10	PF04967.7	gi|257051404|ref|YP_003129237.1|	-	3e-20	71.5	0.0	6.5e-20	70.4	0.0	1.6	1	0	0	1	1	1	1	HTH	DNA	binding	domain
PAS	PF00989.19	gi|257051404|ref|YP_003129237.1|	-	2.7e-11	43.2	0.1	4.5e-09	36.0	0.0	2.6	2	0	0	2	2	2	1	PAS	fold
Response_reg	PF00072.19	gi|257051404|ref|YP_003129237.1|	-	2.3e-10	40.4	0.0	8.2e-10	38.6	0.0	2.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
GAF_2	PF13185.1	gi|257051404|ref|YP_003129237.1|	-	4.1e-10	40.3	1.8	6.4e-10	39.6	0.2	2.2	2	0	0	2	2	2	1	GAF	domain
PAS_4	PF08448.5	gi|257051404|ref|YP_003129237.1|	-	4.4e-10	39.5	4.5	1.5e-09	37.8	0.0	3.4	4	0	0	4	4	4	1	PAS	fold
GAF_3	PF13492.1	gi|257051404|ref|YP_003129237.1|	-	1.1e-08	35.1	0.1	7.3e-08	32.5	0.0	2.3	2	1	0	2	2	2	1	GAF	domain
PAS_3	PF08447.6	gi|257051404|ref|YP_003129237.1|	-	1.9e-07	31.0	0.0	7.1e-07	29.2	0.0	2.0	1	1	0	1	1	1	1	PAS	fold
GAF	PF01590.21	gi|257051404|ref|YP_003129237.1|	-	2.7e-05	24.3	0.3	0.00011	22.3	0.0	2.3	2	0	0	2	2	2	1	GAF	domain
PAS_8	PF13188.1	gi|257051404|ref|YP_003129237.1|	-	0.00012	21.8	0.0	0.00035	20.3	0.0	1.8	1	0	0	1	1	1	1	PAS	domain
AfsA	PF03756.8	gi|257051404|ref|YP_003129237.1|	-	0.0042	16.7	0.9	0.018	14.7	0.1	2.5	2	0	0	2	2	2	1	A-factor	biosynthesis	hotdog	domain
DAO	PF01266.19	gi|257051405|ref|YP_003129238.1|	-	1.6e-20	73.3	1.4	4.2e-11	42.3	0.0	2.5	2	1	0	3	3	3	2	FAD	dependent	oxidoreductase
Amino_oxidase	PF01593.19	gi|257051405|ref|YP_003129238.1|	-	2.8e-18	66.2	1.0	1.1e-13	51.1	0.1	2.6	2	1	0	2	2	2	2	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.1	gi|257051405|ref|YP_003129238.1|	-	2.9e-17	62.4	1.0	1.5e-16	60.1	0.0	2.7	3	0	0	3	3	3	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_2	PF00890.19	gi|257051405|ref|YP_003129238.1|	-	5.1e-07	28.8	1.8	1.5e-06	27.3	1.3	1.7	1	0	0	1	1	1	1	FAD	binding	domain
Pyr_redox_2	PF07992.9	gi|257051405|ref|YP_003129238.1|	-	1.6e-05	24.9	0.3	7.2e-05	22.7	0.3	1.9	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|257051405|ref|YP_003129238.1|	-	1.7e-05	25.1	2.5	6.1e-05	23.3	0.2	2.8	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.2	gi|257051405|ref|YP_003129238.1|	-	2.3e-05	23.7	0.0	4.7e-05	22.6	0.0	1.5	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.14	gi|257051405|ref|YP_003129238.1|	-	9.4e-05	21.6	0.4	0.00016	20.8	0.3	1.3	1	0	0	1	1	1	1	FAD	binding	domain
HI0933_like	PF03486.9	gi|257051405|ref|YP_003129238.1|	-	0.0003	19.3	0.7	0.0094	14.4	0.9	2.1	2	0	0	2	2	2	1	HI0933-like	protein
Pyr_redox_3	PF13738.1	gi|257051405|ref|YP_003129238.1|	-	0.00046	20.3	0.1	0.013	15.5	0.0	2.3	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Strep_67kDa_ant	PF06100.6	gi|257051405|ref|YP_003129238.1|	-	0.00056	18.4	0.0	0.0011	17.4	0.0	1.4	2	0	0	2	2	2	1	Streptococcal	67	kDa	myosin-cross-reactive	antigen	like	family
AlaDh_PNT_C	PF01262.16	gi|257051405|ref|YP_003129238.1|	-	0.0045	16.5	0.3	0.007	15.9	0.2	1.3	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
Thi4	PF01946.12	gi|257051405|ref|YP_003129238.1|	-	0.0086	15.1	0.6	0.016	14.3	0.4	1.3	1	0	0	1	1	1	1	Thi4	family
GIDA	PF01134.17	gi|257051405|ref|YP_003129238.1|	-	0.01	14.7	1.0	0.016	14.1	0.7	1.2	1	0	0	1	1	1	0	Glucose	inhibited	division	protein	A
NAD_binding_7	PF13241.1	gi|257051405|ref|YP_003129238.1|	-	0.031	14.5	0.0	0.058	13.6	0.0	1.5	1	0	0	1	1	1	0	Putative	NAD(P)-binding
3HCDH_N	PF02737.13	gi|257051405|ref|YP_003129238.1|	-	0.13	11.8	0.3	0.23	11.0	0.2	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
BCD	PF15461.1	gi|257051406|ref|YP_003129239.1|	-	3e-61	207.0	14.3	4.1e-61	206.6	9.9	1.2	1	0	0	1	1	1	1	Beta-carotene	15,15'-dioxygenase
Epiglycanin_C	PF14654.1	gi|257051406|ref|YP_003129239.1|	-	0.15	12.0	2.3	14	5.7	0.1	3.0	2	0	0	2	2	2	0	Mucin,	catalytic,	TM	and	cytoplasmic	tail	region
zf-HYPF	PF07503.7	gi|257051407|ref|YP_003129240.1|	-	0.011	15.1	0.4	1.2	8.5	0.0	2.2	2	0	0	2	2	2	0	HypF	finger
zinc_ribbon_5	PF13719.1	gi|257051407|ref|YP_003129240.1|	-	0.088	12.4	0.2	0.4	10.3	0.0	2.0	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-ribbon_3	PF13248.1	gi|257051407|ref|YP_003129240.1|	-	0.18	11.0	0.1	0.18	11.0	0.1	1.7	2	0	0	2	2	2	0	zinc-ribbon	domain
Lar_restr_allev	PF14354.1	gi|257051407|ref|YP_003129240.1|	-	0.58	10.4	3.0	9.1	6.6	2.1	2.0	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
adh_short	PF00106.20	gi|257051408|ref|YP_003129241.1|	-	3.6e-28	98.5	1.1	4.3e-28	98.3	0.7	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.1	gi|257051408|ref|YP_003129241.1|	-	2.5e-17	63.4	0.0	4.8e-16	59.2	0.0	1.9	1	1	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.5	gi|257051408|ref|YP_003129241.1|	-	2.7e-11	43.4	0.6	3.8e-11	42.9	0.4	1.2	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.16	gi|257051408|ref|YP_003129241.1|	-	0.00043	19.7	0.0	0.00062	19.2	0.0	1.4	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
NAD_binding_10	PF13460.1	gi|257051408|ref|YP_003129241.1|	-	0.0072	16.3	0.9	0.014	15.3	0.6	1.5	1	1	0	1	1	1	1	NADH(P)-binding
Enoyl_reductase	PF12241.3	gi|257051408|ref|YP_003129241.1|	-	0.041	12.8	0.0	0.061	12.3	0.0	1.1	1	0	0	1	1	1	0	Trans-2-enoyl-CoA	reductase	catalytic	region
NmrA	PF05368.8	gi|257051408|ref|YP_003129241.1|	-	0.06	12.5	0.2	0.087	12.0	0.1	1.2	1	0	0	1	1	1	0	NmrA-like	family
AIM24	PF01987.12	gi|257051409|ref|YP_003129242.1|	-	7.7e-68	228.1	0.2	8.8e-68	227.9	0.1	1.0	1	0	0	1	1	1	1	Mitochondrial	biogenesis	AIM24
FG-GAP_2	PF14312.1	gi|257051410|ref|YP_003129243.1|	-	8.9e-28	96.0	21.3	3.4e-06	26.9	0.0	7.6	8	0	0	8	8	8	6	FG-GAP	repeat
AnfO_nitrog	PF09582.5	gi|257051410|ref|YP_003129243.1|	-	0.00024	20.2	0.0	15	4.6	0.0	5.1	6	0	0	6	6	6	3	Iron	only	nitrogenase	protein	AnfO	(AnfO_nitrog)
DUF402	PF04167.8	gi|257051411|ref|YP_003129244.1|	-	1.6e-20	72.6	1.1	3.3e-20	71.6	0.7	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF402)
S1	PF00575.18	gi|257051411|ref|YP_003129244.1|	-	2e-05	24.6	0.0	6.9e-05	22.8	0.0	2.0	1	0	0	1	1	1	1	S1	RNA	binding	domain
Sec61_beta	PF03911.11	gi|257051412|ref|YP_003129245.1|	-	1.4e-07	31.2	0.0	1.8e-07	30.8	0.0	1.2	1	0	0	1	1	1	1	Sec61beta	family
Thioredoxin	PF00085.15	gi|257051413|ref|YP_003129246.1|	-	7.3e-19	67.3	0.0	7.8e-19	67.2	0.0	1.0	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_8	PF13905.1	gi|257051413|ref|YP_003129246.1|	-	7.5e-09	35.6	0.0	0.00021	21.3	0.0	2.1	1	1	1	2	2	2	2	Thioredoxin-like
Thioredoxin_2	PF13098.1	gi|257051413|ref|YP_003129246.1|	-	1.9e-06	28.0	0.1	0.0002	21.5	0.1	2.0	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_9	PF14595.1	gi|257051413|ref|YP_003129246.1|	-	2.1e-05	24.1	0.0	2.4e-05	23.9	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_3	PF13192.1	gi|257051413|ref|YP_003129246.1|	-	3.2e-05	23.6	0.0	3.3e-05	23.6	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin	domain
AhpC-TSA	PF00578.16	gi|257051413|ref|YP_003129246.1|	-	0.0017	18.0	0.1	0.13	11.9	0.0	2.0	1	1	1	2	2	2	1	AhpC/TSA	family
DUF836	PF05768.9	gi|257051413|ref|YP_003129246.1|	-	0.0036	17.5	0.0	0.004	17.3	0.0	1.1	1	0	0	1	1	1	1	Glutaredoxin-like	domain	(DUF836)
Thioredoxin_7	PF13899.1	gi|257051413|ref|YP_003129246.1|	-	0.0045	16.9	1.0	0.01	15.8	0.1	2.1	2	1	0	2	2	2	1	Thioredoxin-like
Glutaredoxin	PF00462.19	gi|257051413|ref|YP_003129246.1|	-	0.0094	15.9	0.0	0.014	15.3	0.0	1.3	1	0	0	1	1	1	1	Glutaredoxin
Redoxin	PF08534.5	gi|257051413|ref|YP_003129246.1|	-	0.053	13.0	0.1	0.89	9.0	0.0	2.0	1	1	1	2	2	2	0	Redoxin
F420_oxidored	PF03807.12	gi|257051414|ref|YP_003129247.1|	-	3.3e-20	72.2	0.3	6.7e-20	71.3	0.2	1.5	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_Gly3P_dh_N	PF01210.18	gi|257051414|ref|YP_003129247.1|	-	5.6e-08	32.6	0.0	7.6e-08	32.2	0.0	1.2	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
ApbA	PF02558.11	gi|257051414|ref|YP_003129247.1|	-	2.9e-06	26.7	0.1	3.7e-06	26.4	0.0	1.2	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
Semialdhyde_dh	PF01118.19	gi|257051414|ref|YP_003129247.1|	-	2e-05	24.8	0.4	4.4e-05	23.7	0.1	1.6	1	1	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
NAD_binding_10	PF13460.1	gi|257051414|ref|YP_003129247.1|	-	0.00013	22.0	1.5	0.00022	21.2	1.0	1.4	1	1	0	1	1	1	1	NADH(P)-binding
Saccharop_dh	PF03435.13	gi|257051414|ref|YP_003129247.1|	-	0.00015	20.8	0.5	0.00019	20.5	0.4	1.3	1	1	0	1	1	1	1	Saccharopine	dehydrogenase
adh_short	PF00106.20	gi|257051414|ref|YP_003129247.1|	-	0.0002	21.3	3.8	0.0002	21.3	2.6	1.8	1	1	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.5	gi|257051414|ref|YP_003129247.1|	-	0.00025	20.7	0.6	0.00042	20.0	0.4	1.4	1	0	0	1	1	1	1	KR	domain
NmrA	PF05368.8	gi|257051414|ref|YP_003129247.1|	-	0.00075	18.8	0.1	0.0012	18.2	0.1	1.2	1	0	0	1	1	1	1	NmrA-like	family
NAD_binding_2	PF03446.10	gi|257051414|ref|YP_003129247.1|	-	0.011	15.6	0.1	0.019	14.7	0.0	1.4	1	0	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
GFO_IDH_MocA	PF01408.17	gi|257051414|ref|YP_003129247.1|	-	0.016	15.6	0.4	0.037	14.5	0.1	1.6	2	0	0	2	2	2	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Ldh_1_N	PF00056.18	gi|257051414|ref|YP_003129247.1|	-	0.031	14.1	0.0	0.054	13.3	0.0	1.4	1	0	0	1	1	1	0	lactate/malate	dehydrogenase,	NAD	binding	domain
3HCDH_N	PF02737.13	gi|257051414|ref|YP_003129247.1|	-	0.055	13.1	0.6	0.11	12.1	0.4	1.6	1	1	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Shikimate_DH	PF01488.15	gi|257051414|ref|YP_003129247.1|	-	0.055	13.5	0.1	0.09	12.8	0.0	1.3	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
HAD_2	PF13419.1	gi|257051415|ref|YP_003129248.1|	-	3.5e-12	46.8	1.7	3.3e-10	40.4	1.2	2.5	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.21	gi|257051415|ref|YP_003129248.1|	-	0.00013	22.4	2.3	0.0015	18.9	1.6	2.2	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|257051415|ref|YP_003129248.1|	-	0.00083	19.0	0.5	0.0033	17.0	0.4	2.0	1	1	0	1	1	1	1	HAD-hyrolase-like
Pribosyl_synth	PF14572.1	gi|257051415|ref|YP_003129248.1|	-	0.028	14.1	0.1	0.74	9.5	0.0	2.2	2	0	0	2	2	2	0	Phosphoribosyl	synthetase-associated	domain
Flagellin_IN	PF07196.8	gi|257051415|ref|YP_003129248.1|	-	0.06	13.3	0.9	0.2	11.6	0.3	2.0	2	0	0	2	2	2	0	Flagellin	hook	IN	motif
Peptidase_M54	PF07998.6	gi|257051416|ref|YP_003129249.1|	-	9.6e-25	87.4	0.1	1.2e-24	87.1	0.1	1.1	1	0	0	1	1	1	1	Peptidase	family	M54
Peptidase_M10	PF00413.19	gi|257051416|ref|YP_003129249.1|	-	1.3e-05	24.9	0.0	1.3e-05	24.9	0.0	1.2	1	0	0	1	1	1	1	Matrixin
Reprolysin_2	PF13574.1	gi|257051416|ref|YP_003129249.1|	-	0.00011	22.3	0.0	0.00012	22.1	0.0	1.1	1	0	0	1	1	1	1	Metallo-peptidase	family	M12B	Reprolysin-like
Reprolysin_3	PF13582.1	gi|257051416|ref|YP_003129249.1|	-	0.00015	22.3	0.0	0.00018	22.0	0.0	1.3	1	0	0	1	1	1	1	Metallo-peptidase	family	M12B	Reprolysin-like
Reprolysin_4	PF13583.1	gi|257051416|ref|YP_003129249.1|	-	0.00026	20.5	0.0	0.0003	20.3	0.0	1.1	1	0	0	1	1	1	1	Metallo-peptidase	family	M12B	Reprolysin-like
Reprolysin_5	PF13688.1	gi|257051416|ref|YP_003129249.1|	-	0.0014	18.5	0.0	0.0015	18.5	0.0	1.1	1	0	0	1	1	1	1	Metallo-peptidase	family	M12
DUF1025	PF06262.6	gi|257051416|ref|YP_003129249.1|	-	0.0042	16.8	0.1	0.0076	16.0	0.1	1.4	1	0	0	1	1	1	1	Possibl	zinc	metallo-peptidase
Peptidase_M66	PF10462.4	gi|257051416|ref|YP_003129249.1|	-	0.016	14.1	0.1	0.019	13.8	0.0	1.1	1	0	0	1	1	1	0	Peptidase	M66
Peptidase_M43	PF05572.8	gi|257051416|ref|YP_003129249.1|	-	0.023	14.2	0.0	0.029	13.9	0.0	1.4	1	0	0	1	1	1	0	Pregnancy-associated	plasma	protein-A
Reprolysin	PF01421.14	gi|257051416|ref|YP_003129249.1|	-	0.025	14.1	0.0	0.032	13.7	0.0	1.2	1	0	0	1	1	1	0	Reprolysin	(M12B)	family	zinc	metalloprotease
Metallopep	PF12044.3	gi|257051416|ref|YP_003129249.1|	-	0.032	12.6	0.4	0.045	12.1	0.2	1.1	1	0	0	1	1	1	0	Putative	peptidase	family
Peptidase_M57	PF12388.3	gi|257051416|ref|YP_003129249.1|	-	0.081	12.2	0.1	0.18	11.0	0.0	1.5	2	0	0	2	2	2	0	Dual-action	HEIGH	metallo-peptidase
TIR-like	PF10137.4	gi|257051416|ref|YP_003129249.1|	-	0.13	11.8	0.1	0.33	10.5	0.0	1.7	1	1	1	2	2	2	0	Predicted	nucleotide-binding	protein	containing	TIR-like	domain
Response_reg	PF00072.19	gi|257051417|ref|YP_003129250.1|	-	1.5e-21	76.4	0.0	3.8e-21	75.1	0.0	1.7	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HATPase_c	PF02518.21	gi|257051417|ref|YP_003129250.1|	-	2e-21	75.7	0.2	6.4e-21	74.1	0.0	1.9	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_4	PF08448.5	gi|257051417|ref|YP_003129250.1|	-	2.9e-14	53.0	3.6	2.2e-13	50.1	0.3	3.2	2	1	0	2	2	2	1	PAS	fold
PAS_8	PF13188.1	gi|257051417|ref|YP_003129250.1|	-	3.1e-10	39.5	0.1	0.00059	19.6	0.0	3.0	2	0	0	2	2	2	2	PAS	domain
PAS_9	PF13426.1	gi|257051417|ref|YP_003129250.1|	-	7.6e-09	35.8	0.0	1e-05	25.8	0.0	2.7	2	0	0	2	2	2	2	PAS	domain
GAF_2	PF13185.1	gi|257051417|ref|YP_003129250.1|	-	3.5e-08	34.0	0.1	1.2e-07	32.3	0.0	2.0	1	0	0	1	1	1	1	GAF	domain
HisKA	PF00512.20	gi|257051417|ref|YP_003129250.1|	-	1.5e-07	31.2	0.6	1.5e-07	31.2	0.4	3.4	4	0	0	4	4	3	1	His	Kinase	A	(phospho-acceptor)	domain
GAF_3	PF13492.1	gi|257051417|ref|YP_003129250.1|	-	0.00024	21.2	0.1	0.0013	18.8	0.0	2.3	2	0	0	2	2	2	1	GAF	domain
HATPase_c_2	PF13581.1	gi|257051417|ref|YP_003129250.1|	-	0.00047	19.9	0.1	0.0012	18.6	0.1	1.7	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
PAS	PF00989.19	gi|257051417|ref|YP_003129250.1|	-	0.0032	17.2	0.0	0.15	11.8	0.0	2.7	2	0	0	2	2	2	1	PAS	fold
HATPase_c_3	PF13589.1	gi|257051417|ref|YP_003129250.1|	-	0.0051	16.4	0.0	0.012	15.2	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
GAF	PF01590.21	gi|257051417|ref|YP_003129250.1|	-	0.0062	16.6	1.6	0.013	15.6	0.0	2.4	3	0	0	3	3	3	1	GAF	domain
Lactate_perm	PF02652.9	gi|257051418|ref|YP_003129251.1|	-	7.6e-96	321.6	29.3	2.8e-95	319.8	20.3	1.7	1	1	0	1	1	1	1	L-lactate	permease
PHP	PF02811.14	gi|257051419|ref|YP_003129252.1|	-	3.3e-06	26.9	0.1	4.6e-06	26.5	0.1	1.3	1	0	0	1	1	1	1	PHP	domain
TGT	PF01702.13	gi|257051419|ref|YP_003129252.1|	-	0.072	12.3	0.0	0.098	11.9	0.0	1.2	1	0	0	1	1	1	0	Queuine	tRNA-ribosyltransferase
Amidohydro_4	PF13147.1	gi|257051419|ref|YP_003129252.1|	-	0.68	9.9	9.3	2.8	7.8	6.5	1.9	1	1	0	1	1	1	0	Amidohydrolase
ABC_tran	PF00005.22	gi|257051420|ref|YP_003129253.1|	-	1.9e-36	125.4	0.0	4.6e-19	69.0	0.0	2.8	2	1	0	2	2	2	2	ABC	transporter
SMC_N	PF02463.14	gi|257051420|ref|YP_003129253.1|	-	8.1e-13	48.0	4.2	0.001	18.3	0.0	4.2	4	0	0	4	4	4	2	RecF/RecN/SMC	N	terminal	domain
AAA_21	PF13304.1	gi|257051420|ref|YP_003129253.1|	-	1.1e-12	48.5	0.4	0.0075	16.2	0.0	4.2	3	1	0	4	4	4	3	AAA	domain
RLI	PF04068.10	gi|257051420|ref|YP_003129253.1|	-	2.8e-12	45.9	0.7	5.4e-12	45.0	0.5	1.5	1	0	0	1	1	1	1	Possible	Fer4-like	domain	in	RNase	L	inhibitor,	RLI
AAA_17	PF13207.1	gi|257051420|ref|YP_003129253.1|	-	1.8e-10	41.6	0.2	7e-06	26.8	0.0	3.0	2	2	0	2	2	2	2	AAA	domain
AAA_16	PF13191.1	gi|257051420|ref|YP_003129253.1|	-	4.8e-09	36.4	0.2	0.0013	18.7	0.0	2.5	2	1	0	2	2	2	2	AAA	ATPase	domain
AAA_22	PF13401.1	gi|257051420|ref|YP_003129253.1|	-	1.9e-07	31.3	0.0	0.00096	19.2	0.0	3.2	2	2	0	2	2	2	2	AAA	domain
AAA_18	PF13238.1	gi|257051420|ref|YP_003129253.1|	-	5e-07	30.0	0.0	0.014	15.6	0.0	2.8	2	0	0	2	2	2	2	AAA	domain
AAA	PF00004.24	gi|257051420|ref|YP_003129253.1|	-	4.1e-06	27.0	0.0	0.17	12.0	0.0	2.7	3	0	0	3	3	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
RNA_helicase	PF00910.17	gi|257051420|ref|YP_003129253.1|	-	5.8e-06	26.4	0.0	0.075	13.2	0.0	2.6	2	0	0	2	2	2	2	RNA	helicase
NACHT	PF05729.7	gi|257051420|ref|YP_003129253.1|	-	5e-05	23.0	0.0	0.23	11.0	0.0	2.5	2	0	0	2	2	2	2	NACHT	domain
RuvB_N	PF05496.7	gi|257051420|ref|YP_003129253.1|	-	9.5e-05	21.5	0.0	0.25	10.3	0.0	2.5	2	0	0	2	2	2	2	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_23	PF13476.1	gi|257051420|ref|YP_003129253.1|	-	0.00024	21.4	0.1	0.99	9.6	0.1	2.3	2	0	0	2	2	2	2	AAA	domain
Fer4	PF00037.22	gi|257051420|ref|YP_003129253.1|	-	0.00049	19.5	1.3	0.00049	19.5	0.9	2.7	3	0	0	3	3	3	1	4Fe-4S	binding	domain
Rad17	PF03215.10	gi|257051420|ref|YP_003129253.1|	-	0.0007	18.4	0.0	0.38	9.3	0.0	2.6	2	1	1	3	3	3	1	Rad17	cell	cycle	checkpoint	protein
AAA_33	PF13671.1	gi|257051420|ref|YP_003129253.1|	-	0.00081	19.2	0.8	0.15	11.9	0.0	3.0	3	1	0	3	3	2	1	AAA	domain
SbcCD_C	PF13558.1	gi|257051420|ref|YP_003129253.1|	-	0.00093	19.0	0.1	1.7	8.6	0.0	2.9	2	1	0	2	2	2	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_29	PF13555.1	gi|257051420|ref|YP_003129253.1|	-	0.00093	18.6	0.3	2	8.0	0.0	2.5	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
DUF258	PF03193.11	gi|257051420|ref|YP_003129253.1|	-	0.001	18.2	0.0	0.61	9.2	0.0	2.4	2	0	0	2	2	2	1	Protein	of	unknown	function,	DUF258
AAA_19	PF13245.1	gi|257051420|ref|YP_003129253.1|	-	0.0011	18.6	0.3	0.55	10.0	0.0	3.2	3	0	0	3	3	3	1	Part	of	AAA	domain
MobB	PF03205.9	gi|257051420|ref|YP_003129253.1|	-	0.0015	18.2	0.0	0.65	9.6	0.0	2.6	2	0	0	2	2	2	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_14	PF13173.1	gi|257051420|ref|YP_003129253.1|	-	0.0021	17.9	0.0	3	7.7	0.0	2.8	3	0	0	3	3	2	1	AAA	domain
NTPase_1	PF03266.10	gi|257051420|ref|YP_003129253.1|	-	0.0033	17.1	0.1	3	7.5	0.1	2.7	2	0	0	2	2	2	1	NTPase
AAA_24	PF13479.1	gi|257051420|ref|YP_003129253.1|	-	0.004	16.7	0.1	1.6	8.2	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
AAA_5	PF07728.9	gi|257051420|ref|YP_003129253.1|	-	0.0051	16.5	0.0	0.81	9.4	0.0	3.1	3	0	0	3	3	3	1	AAA	domain	(dynein-related	subfamily)
SRP54	PF00448.17	gi|257051420|ref|YP_003129253.1|	-	0.0059	16.0	0.0	2.3	7.6	0.0	2.3	2	0	0	2	2	2	1	SRP54-type	protein,	GTPase	domain
Fer4_6	PF12837.2	gi|257051420|ref|YP_003129253.1|	-	0.0068	16.2	1.4	0.0068	16.2	0.9	2.4	2	0	0	2	2	2	1	4Fe-4S	binding	domain
AAA_10	PF12846.2	gi|257051420|ref|YP_003129253.1|	-	0.011	15.1	0.0	0.76	9.1	0.0	2.8	3	0	0	3	3	3	0	AAA-like	domain
ArgK	PF03308.11	gi|257051420|ref|YP_003129253.1|	-	0.014	14.1	0.3	3	6.5	0.0	2.2	2	0	0	2	2	2	0	ArgK	protein
Thymidylate_kin	PF02223.12	gi|257051420|ref|YP_003129253.1|	-	0.015	14.6	0.0	1.9	7.8	0.0	2.4	2	0	0	2	2	2	0	Thymidylate	kinase
AAA_28	PF13521.1	gi|257051420|ref|YP_003129253.1|	-	0.017	15.1	0.0	4.8	7.1	0.0	2.9	2	0	0	2	2	2	0	AAA	domain
AAA_25	PF13481.1	gi|257051420|ref|YP_003129253.1|	-	0.017	14.5	6.9	0.49	9.7	0.4	3.4	3	1	0	3	3	3	0	AAA	domain
DUF87	PF01935.12	gi|257051420|ref|YP_003129253.1|	-	0.02	14.7	0.0	5.2	6.8	0.0	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	DUF87
NB-ARC	PF00931.17	gi|257051420|ref|YP_003129253.1|	-	0.025	13.4	0.1	0.74	8.6	0.0	2.3	2	0	0	2	2	2	0	NB-ARC	domain
Fer4_2	PF12797.2	gi|257051420|ref|YP_003129253.1|	-	0.087	12.7	11.6	0.097	12.6	1.2	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
AAA_31	PF13614.1	gi|257051420|ref|YP_003129253.1|	-	0.11	12.4	0.0	13	5.6	0.0	3.4	3	1	0	3	3	3	0	AAA	domain
Fer4_9	PF13187.1	gi|257051420|ref|YP_003129253.1|	-	0.2	11.9	11.1	0.37	11.0	7.7	1.4	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
AAA_13	PF13166.1	gi|257051420|ref|YP_003129253.1|	-	0.25	9.7	0.0	16	3.7	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
Fer4_7	PF12838.2	gi|257051420|ref|YP_003129253.1|	-	0.64	10.4	11.1	1.6	9.1	7.7	1.7	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|257051420|ref|YP_003129253.1|	-	2.8	7.8	12.1	7.3	6.4	8.5	1.7	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_21	PF14697.1	gi|257051420|ref|YP_003129253.1|	-	4	7.3	9.1	9.4	6.1	6.3	1.6	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_3	PF12798.2	gi|257051420|ref|YP_003129253.1|	-	5.3	7.8	13.0	0.12	13.0	2.2	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_16	PF13484.1	gi|257051420|ref|YP_003129253.1|	-	7.6	7.3	11.1	0.18	12.5	1.0	1.9	1	1	1	2	2	2	0	4Fe-4S	double	cluster	binding	domain
NADH-u_ox-rdase	PF10785.4	gi|257051421|ref|YP_003129254.1|	-	0.063	13.5	3.1	2	8.7	0.2	2.3	1	1	1	2	2	2	0	NADH-ubiquinone	oxidoreductase	complex	I,	21	kDa	subunit
PT-VENN	PF04829.8	gi|257051421|ref|YP_003129254.1|	-	0.41	10.2	2.3	0.66	9.5	1.6	1.4	1	1	0	1	1	1	0	Pre-toxin	domain	with	VENN	motif
VIT1	PF01988.14	gi|257051421|ref|YP_003129254.1|	-	0.55	9.6	4.6	0.68	9.3	3.2	1.2	1	0	0	1	1	1	0	VIT	family
TrmB	PF01978.14	gi|257051422|ref|YP_003129255.1|	-	0.0039	16.8	0.2	0.0056	16.3	0.1	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
TFIIE_alpha	PF02002.12	gi|257051422|ref|YP_003129255.1|	-	0.029	13.8	0.0	0.035	13.6	0.0	1.2	1	0	0	1	1	1	0	TFIIE	alpha	subunit
MarR_2	PF12802.2	gi|257051422|ref|YP_003129255.1|	-	0.036	13.7	0.0	0.044	13.4	0.0	1.2	1	0	0	1	1	1	0	MarR	family
MarR	PF01047.17	gi|257051422|ref|YP_003129255.1|	-	0.062	13.0	0.0	0.088	12.5	0.0	1.2	1	0	0	1	1	1	0	MarR	family
GntR	PF00392.16	gi|257051422|ref|YP_003129255.1|	-	0.065	12.6	0.1	0.094	12.1	0.1	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
DUF2540	PF10802.3	gi|257051422|ref|YP_003129255.1|	-	0.066	12.8	0.0	0.097	12.3	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2540)
HTH_27	PF13463.1	gi|257051422|ref|YP_003129255.1|	-	0.076	13.3	0.0	0.1	12.9	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
PI3K_C2	PF00792.19	gi|257051422|ref|YP_003129255.1|	-	0.12	12.1	0.0	0.15	11.8	0.0	1.2	1	0	0	1	1	1	0	Phosphoinositide	3-kinase	C2
HTH_24	PF13412.1	gi|257051422|ref|YP_003129255.1|	-	0.14	11.5	0.0	0.2	11.0	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_36	PF13730.1	gi|257051422|ref|YP_003129255.1|	-	0.14	12.2	0.0	0.22	11.6	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_12	PF08461.5	gi|257051422|ref|YP_003129255.1|	-	0.15	11.8	0.1	0.28	10.9	0.1	1.7	1	1	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
Abhydrolase_2	PF02230.11	gi|257051423|ref|YP_003129256.1|	-	1.8e-19	70.0	0.0	2.1e-18	66.5	0.0	1.9	1	1	0	1	1	1	1	Phospholipase/Carboxylesterase
Abhydrolase_6	PF12697.2	gi|257051423|ref|YP_003129256.1|	-	1.6e-10	41.2	1.5	6.9e-08	32.6	0.2	2.1	1	1	1	2	2	2	2	Alpha/beta	hydrolase	family
Abhydrolase_5	PF12695.2	gi|257051423|ref|YP_003129256.1|	-	9.3e-10	38.4	0.1	1.1e-09	38.1	0.1	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
DLH	PF01738.13	gi|257051423|ref|YP_003129256.1|	-	1.2e-05	24.7	0.0	1.5e-05	24.4	0.0	1.1	1	0	0	1	1	1	1	Dienelactone	hydrolase	family
Abhydrolase_1	PF00561.15	gi|257051423|ref|YP_003129256.1|	-	0.00018	21.1	0.0	0.00023	20.8	0.0	1.1	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
FSH1	PF03959.8	gi|257051423|ref|YP_003129256.1|	-	0.0018	17.7	0.0	0.0019	17.6	0.0	1.2	1	0	0	1	1	1	1	Serine	hydrolase	(FSH1)
PE-PPE	PF08237.6	gi|257051423|ref|YP_003129256.1|	-	0.017	14.5	0.0	0.025	13.9	0.0	1.2	1	0	0	1	1	1	0	PE-PPE	domain
Esterase_phd	PF10503.4	gi|257051423|ref|YP_003129256.1|	-	0.02	14.1	0.2	0.043	13.0	0.0	1.5	1	1	0	1	1	1	0	Esterase	PHB	depolymerase
Esterase	PF00756.15	gi|257051423|ref|YP_003129256.1|	-	0.032	13.6	0.0	0.046	13.1	0.0	1.2	1	0	0	1	1	1	0	Putative	esterase
Cutinase	PF01083.17	gi|257051423|ref|YP_003129256.1|	-	0.13	11.9	0.0	0.2	11.3	0.0	1.3	1	0	0	1	1	1	0	Cutinase
PTPS	PF01242.14	gi|257051424|ref|YP_003129257.1|	-	0.045	13.4	0.0	0.096	12.3	0.0	1.5	1	1	0	1	1	1	0	6-pyruvoyl	tetrahydropterin	synthase
NAD_binding_2	PF03446.10	gi|257051425|ref|YP_003129258.1|	-	1.5e-47	161.4	1.1	2.3e-47	160.8	0.8	1.2	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NAD_binding_11	PF14833.1	gi|257051425|ref|YP_003129258.1|	-	1.2e-26	93.2	0.1	2.1e-26	92.3	0.1	1.4	1	0	0	1	1	1	1	NAD-binding	of	NADP-dependent	3-hydroxyisobutyrate	dehydrogenase
F420_oxidored	PF03807.12	gi|257051425|ref|YP_003129258.1|	-	4.9e-09	36.5	0.1	1.4e-08	35.0	0.0	1.8	1	1	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
2-Hacid_dh_C	PF02826.14	gi|257051425|ref|YP_003129258.1|	-	1.4e-06	27.6	0.0	1.9e-06	27.1	0.0	1.2	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.7	gi|257051425|ref|YP_003129258.1|	-	0.00032	20.1	0.0	0.00052	19.4	0.0	1.3	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
ApbA	PF02558.11	gi|257051425|ref|YP_003129258.1|	-	0.00084	18.8	0.0	0.0015	18.0	0.0	1.4	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
3HCDH_N	PF02737.13	gi|257051425|ref|YP_003129258.1|	-	0.0028	17.3	0.1	0.0068	16.0	0.1	1.8	1	1	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Shikimate_DH	PF01488.15	gi|257051425|ref|YP_003129258.1|	-	0.0059	16.7	0.0	0.01	15.9	0.0	1.5	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
TrkA_N	PF02254.13	gi|257051425|ref|YP_003129258.1|	-	0.036	14.0	0.1	0.21	11.6	0.1	2.2	1	1	0	1	1	1	0	TrkA-N	domain
Rossmann-like	PF10727.4	gi|257051425|ref|YP_003129258.1|	-	0.073	12.8	0.3	0.2	11.3	0.1	1.8	1	1	1	2	2	2	0	Rossmann-like	domain
XdhC_C	PF13478.1	gi|257051425|ref|YP_003129258.1|	-	0.093	13.0	0.1	0.19	12.0	0.0	1.6	1	1	0	1	1	1	0	XdhC	Rossmann	domain
Glyoxalase_2	PF12681.2	gi|257051425|ref|YP_003129258.1|	-	0.26	11.8	2.0	52	4.5	0.0	3.7	3	1	1	4	4	4	0	Glyoxalase-like	domain
DUF3123	PF11321.3	gi|257051425|ref|YP_003129258.1|	-	6.6	7.0	7.6	11	6.3	0.0	2.9	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF3123)
DUF790	PF05626.6	gi|257051426|ref|YP_003129259.1|	-	4.7e-94	315.0	0.0	5.7e-94	314.7	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF790)
Nol1_Nop2_Fmu_2	PF13636.1	gi|257051427|ref|YP_003129260.1|	-	1.2e-18	67.0	0.0	1.5e-18	66.7	0.0	1.1	1	0	0	1	1	1	1	pre-rRNA	processing	and	ribosome	biogenesis
Nol1_Nop2_Fmu	PF01189.12	gi|257051428|ref|YP_003129261.1|	-	7.1e-51	173.2	0.0	8.8e-51	172.9	0.0	1.0	1	0	0	1	1	1	1	NOL1/NOP2/sun	family
Methyltransf_31	PF13847.1	gi|257051428|ref|YP_003129261.1|	-	2.6e-07	30.3	0.0	5.5e-07	29.2	0.0	1.5	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|257051428|ref|YP_003129261.1|	-	2.7e-06	27.9	0.0	6.8e-06	26.6	0.0	1.7	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|257051428|ref|YP_003129261.1|	-	4.2e-06	26.7	0.1	9.3e-06	25.6	0.1	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
FtsJ	PF01728.14	gi|257051428|ref|YP_003129261.1|	-	0.033	14.1	0.0	0.061	13.3	0.0	1.4	1	1	0	1	1	1	0	FtsJ-like	methyltransferase
Methyltransf_11	PF08241.7	gi|257051428|ref|YP_003129261.1|	-	0.058	13.8	0.1	2.7	8.5	0.1	2.9	2	1	0	2	2	2	0	Methyltransferase	domain
PAC2	PF09754.4	gi|257051429|ref|YP_003129262.1|	-	2.4e-38	132.1	0.0	2.8e-38	131.9	0.0	1.0	1	0	0	1	1	1	1	PAC2	family
LysE	PF01810.13	gi|257051430|ref|YP_003129263.1|	-	6.2e-26	90.8	7.9	8.6e-25	87.1	5.5	2.0	1	1	0	1	1	1	1	LysE	type	translocator
Phage_Coat_B	PF05356.6	gi|257051430|ref|YP_003129263.1|	-	3	7.5	5.3	0.67	9.6	0.6	2.1	3	0	0	3	3	3	0	Phage	Coat	protein	B
HD	PF01966.17	gi|257051431|ref|YP_003129264.1|	-	1.1e-15	57.7	1.3	1.8e-15	57.0	0.9	1.4	1	0	0	1	1	1	1	HD	domain
HD_4	PF13328.1	gi|257051431|ref|YP_003129264.1|	-	0.016	14.9	0.3	0.033	13.8	0.2	1.5	1	0	0	1	1	1	0	HD	domain
Acetyltransf_1	PF00583.19	gi|257051432|ref|YP_003129265.1|	-	5e-10	39.2	0.0	8.2e-10	38.5	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.1	gi|257051432|ref|YP_003129265.1|	-	2.8e-09	37.1	0.0	4.1e-09	36.5	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.1	gi|257051432|ref|YP_003129265.1|	-	4.5e-06	26.5	0.0	1.2e-05	25.2	0.0	1.7	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.1	gi|257051432|ref|YP_003129265.1|	-	6.1e-05	23.0	0.0	0.0001	22.2	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.1	gi|257051432|ref|YP_003129265.1|	-	9.1e-05	22.3	0.0	0.00016	21.6	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.1	gi|257051432|ref|YP_003129265.1|	-	0.00045	20.3	0.0	0.00077	19.5	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|257051432|ref|YP_003129265.1|	-	0.0056	16.4	0.0	0.012	15.3	0.0	1.5	1	0	0	1	1	1	1	FR47-like	protein
Zn-ribbon_8	PF09723.5	gi|257051432|ref|YP_003129265.1|	-	0.0068	16.3	1.2	0.012	15.5	0.8	1.4	1	0	0	1	1	1	1	Zinc	ribbon	domain
Acetyltransf_CG	PF14542.1	gi|257051432|ref|YP_003129265.1|	-	0.0091	15.8	0.0	0.018	14.9	0.0	1.5	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Acetyltransf_6	PF13480.1	gi|257051432|ref|YP_003129265.1|	-	0.066	13.1	0.2	0.38	10.7	0.0	2.0	2	0	0	2	2	2	0	Acetyltransferase	(GNAT)	domain
DNA_RNApol_7kD	PF03604.8	gi|257051432|ref|YP_003129265.1|	-	0.24	10.8	2.8	0.43	10.0	1.9	1.3	1	0	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
Bactofilin	PF04519.8	gi|257051433|ref|YP_003129266.1|	-	5.3e-14	52.0	15.7	2.1e-11	43.6	5.3	2.2	1	1	1	2	2	2	2	Polymer-forming	cytoskeletal
DUF4098	PF13345.1	gi|257051433|ref|YP_003129266.1|	-	1.1	9.2	11.4	2.7	8.0	5.7	2.4	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4098)
DUF342	PF03961.8	gi|257051433|ref|YP_003129266.1|	-	2.1	6.6	12.2	3.8	5.8	8.5	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF342)
GFO_IDH_MocA	PF01408.17	gi|257051434|ref|YP_003129267.1|	-	6.9e-23	81.4	0.0	1.7e-22	80.1	0.0	1.7	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
GFO_IDH_MocA_C	PF02894.12	gi|257051434|ref|YP_003129267.1|	-	2.1e-06	27.4	0.0	3.8e-06	26.6	0.0	1.4	1	0	0	1	1	1	1	Oxidoreductase	family,	C-terminal	alpha/beta	domain
EF-hand_10	PF14788.1	gi|257051434|ref|YP_003129267.1|	-	0.15	11.7	0.1	0.38	10.4	0.1	1.7	1	0	0	1	1	1	0	EF	hand
DNA_RNApol_7kD	PF03604.8	gi|257051435|ref|YP_003129268.1|	-	0.015	14.7	1.3	2.5	7.6	0.1	2.3	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-ribbon_3	PF13248.1	gi|257051435|ref|YP_003129268.1|	-	0.019	14.1	0.9	1.4	8.2	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|257051435|ref|YP_003129268.1|	-	0.027	13.7	0.2	4.1	6.8	0.0	2.3	2	0	0	2	2	2	0	TFIIB	zinc-binding
C1_4	PF07975.7	gi|257051435|ref|YP_003129268.1|	-	0.028	14.3	0.3	1	9.4	0.2	2.2	1	1	0	1	1	1	0	TFIIH	C1-like	domain
DUF3268	PF11672.3	gi|257051435|ref|YP_003129268.1|	-	0.1	12.6	0.1	0.14	12.2	0.1	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3268)
Zn_ribbon_recom	PF13408.1	gi|257051435|ref|YP_003129268.1|	-	0.1	12.8	0.1	0.18	12.1	0.1	1.4	1	0	0	1	1	1	0	Recombinase	zinc	beta	ribbon	domain
CpXC	PF14353.1	gi|257051435|ref|YP_003129268.1|	-	0.16	11.9	0.1	20	5.1	0.0	2.0	1	1	1	2	2	2	0	CpXC	protein
zinc_ribbon_5	PF13719.1	gi|257051435|ref|YP_003129268.1|	-	0.27	10.8	2.4	11	5.7	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|257051435|ref|YP_003129268.1|	-	0.32	10.7	1.9	19	5.0	0.2	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
UPF0547	PF10571.4	gi|257051435|ref|YP_003129268.1|	-	0.36	10.5	4.1	1.1	9.0	0.1	2.3	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
zf-NADH-PPase	PF09297.6	gi|257051435|ref|YP_003129268.1|	-	1.8	8.1	5.1	9	5.9	0.2	2.5	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
DJ-1_PfpI	PF01965.19	gi|257051436|ref|YP_003129269.1|	-	2.2e-36	124.4	0.0	2.8e-36	124.1	0.0	1.1	1	0	0	1	1	1	1	DJ-1/PfpI	family
DUF4066	PF13278.1	gi|257051436|ref|YP_003129269.1|	-	4.5e-10	39.0	0.0	5.6e-10	38.7	0.0	1.2	1	0	0	1	1	1	1	Putative	amidotransferase
GATase	PF00117.23	gi|257051436|ref|YP_003129269.1|	-	3.2e-06	26.7	0.0	4.9e-06	26.1	0.0	1.3	1	1	0	1	1	1	1	Glutamine	amidotransferase	class-I
GATase_5	PF13507.1	gi|257051436|ref|YP_003129269.1|	-	0.03	13.2	0.0	0.051	12.4	0.0	1.5	1	1	0	1	1	1	0	CobB/CobQ-like	glutamine	amidotransferase	domain
GATase_3	PF07685.9	gi|257051436|ref|YP_003129269.1|	-	0.032	13.8	0.0	0.052	13.1	0.0	1.4	1	0	0	1	1	1	0	CobB/CobQ-like	glutamine	amidotransferase	domain
ABC_tran	PF00005.22	gi|257051439|ref|YP_003129272.1|	-	6.2e-24	84.8	0.0	8.4e-24	84.4	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|257051439|ref|YP_003129272.1|	-	2.2e-13	50.8	0.1	4.8e-08	33.3	0.0	2.1	1	1	1	2	2	2	2	AAA	domain
AAA_15	PF13175.1	gi|257051439|ref|YP_003129272.1|	-	4e-06	26.1	0.0	0.00066	18.8	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_23	PF13476.1	gi|257051439|ref|YP_003129272.1|	-	0.005	17.1	0.4	0.0084	16.4	0.3	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|257051439|ref|YP_003129272.1|	-	0.023	15.5	1.5	0.081	13.7	1.0	2.0	1	1	0	1	1	1	0	AAA	domain
AAA_29	PF13555.1	gi|257051439|ref|YP_003129272.1|	-	0.042	13.3	0.2	0.08	12.4	0.1	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
ArgK	PF03308.11	gi|257051439|ref|YP_003129272.1|	-	0.071	11.8	0.2	0.12	11.1	0.1	1.3	1	0	0	1	1	1	0	ArgK	protein
AAA_28	PF13521.1	gi|257051439|ref|YP_003129272.1|	-	0.079	12.9	0.2	0.75	9.7	0.0	2.3	2	1	0	2	2	2	0	AAA	domain
AAA_13	PF13166.1	gi|257051439|ref|YP_003129272.1|	-	0.21	10.0	0.0	1.9	6.8	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
AAA_16	PF13191.1	gi|257051439|ref|YP_003129272.1|	-	0.51	10.3	3.2	4.1	7.3	2.2	2.1	1	1	0	1	1	1	0	AAA	ATPase	domain
TrkA_N	PF02254.13	gi|257051440|ref|YP_003129273.1|	-	9e-47	157.8	2.6	7.1e-24	84.0	0.2	2.7	2	0	0	2	2	2	2	TrkA-N	domain
TrkA_C	PF02080.16	gi|257051440|ref|YP_003129273.1|	-	4.2e-28	96.7	1.8	8.5e-14	50.9	0.0	3.1	3	0	0	3	3	3	2	TrkA-C	domain
Ion_trans_2	PF07885.11	gi|257051440|ref|YP_003129273.1|	-	0.00011	21.8	6.1	0.00027	20.5	4.2	1.6	1	0	0	1	1	1	1	Ion	channel
NAD_binding_10	PF13460.1	gi|257051440|ref|YP_003129273.1|	-	0.0016	18.4	0.9	0.0037	17.2	0.6	1.6	1	0	0	1	1	1	1	NADH(P)-binding
NAD_binding_7	PF13241.1	gi|257051440|ref|YP_003129273.1|	-	0.003	17.7	0.6	0.013	15.7	0.1	2.3	2	0	0	2	2	2	1	Putative	NAD(P)-binding
2-Hacid_dh_C	PF02826.14	gi|257051440|ref|YP_003129273.1|	-	0.0036	16.4	0.0	0.026	13.6	0.0	2.2	2	0	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
XdhC_C	PF13478.1	gi|257051440|ref|YP_003129273.1|	-	0.012	15.9	0.3	0.083	13.2	0.0	2.3	2	1	0	2	2	2	0	XdhC	Rossmann	domain
3HCDH_N	PF02737.13	gi|257051440|ref|YP_003129273.1|	-	0.055	13.1	0.0	0.14	11.7	0.0	1.7	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ThiF	PF00899.16	gi|257051440|ref|YP_003129273.1|	-	0.91	9.3	5.1	2.4	7.9	0.9	2.9	2	2	0	2	2	2	0	ThiF	family
bPH_2	PF03703.9	gi|257051441|ref|YP_003129274.1|	-	3.8e-46	155.0	7.1	1.2e-21	76.5	0.3	3.3	3	0	0	3	3	3	3	Bacterial	PH	domain
bPH_4	PF06713.6	gi|257051441|ref|YP_003129274.1|	-	0.098	12.5	0.0	0.5	10.2	0.0	2.1	2	0	0	2	2	2	0	Bacterial	PH	domain
YwiC	PF14256.1	gi|257051441|ref|YP_003129274.1|	-	0.18	11.9	0.1	0.18	11.9	0.1	2.8	4	0	0	4	4	4	0	YwiC-like	protein
bPH_2	PF03703.9	gi|257051442|ref|YP_003129275.1|	-	1.8e-16	59.9	0.0	2.5e-16	59.4	0.0	1.2	1	0	0	1	1	1	1	Bacterial	PH	domain
DUF2157	PF09925.4	gi|257051442|ref|YP_003129275.1|	-	0.0087	15.6	0.5	0.011	15.3	0.3	1.2	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2157)
DUF4229	PF14012.1	gi|257051442|ref|YP_003129275.1|	-	0.029	14.2	5.2	0.051	13.4	3.6	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4229)
Polysacc_synt_3	PF13440.1	gi|257051442|ref|YP_003129275.1|	-	0.034	13.6	1.9	0.052	13.0	1.3	1.2	1	0	0	1	1	1	0	Polysaccharide	biosynthesis	protein
DUF1349	PF07081.6	gi|257051443|ref|YP_003129276.1|	-	5.5e-13	48.6	0.3	7.9e-06	25.3	0.1	3.5	3	1	0	3	3	3	3	Protein	of	unknown	function	(DUF1349)
fn3	PF00041.16	gi|257051443|ref|YP_003129276.1|	-	1.7e-05	24.8	0.3	0.089	12.9	0.1	2.8	2	0	0	2	2	2	2	Fibronectin	type	III	domain
Pec_lyase_C	PF00544.14	gi|257051443|ref|YP_003129276.1|	-	2.4e-05	23.9	0.3	5.2e-05	22.8	0.2	1.6	1	0	0	1	1	1	1	Pectate	lyase
TAT_signal	PF10518.4	gi|257051443|ref|YP_003129276.1|	-	0.1	12.6	1.9	0.5	10.4	1.3	2.2	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Pyr_redox_2	PF07992.9	gi|257051444|ref|YP_003129277.1|	-	4.9e-18	65.7	1.1	3.9e-14	53.0	0.0	2.4	2	1	1	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|257051444|ref|YP_003129277.1|	-	2.3e-13	49.7	0.4	5.7e-07	28.7	0.1	2.1	1	1	1	2	2	2	2	FAD	dependent	oxidoreductase
HI0933_like	PF03486.9	gi|257051444|ref|YP_003129277.1|	-	7.7e-11	41.0	0.1	7.5e-05	21.3	0.0	2.1	2	0	0	2	2	2	2	HI0933-like	protein
Pyr_redox_3	PF13738.1	gi|257051444|ref|YP_003129277.1|	-	8.8e-11	42.2	1.8	3e-06	27.4	0.2	2.1	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.1	gi|257051444|ref|YP_003129277.1|	-	3.1e-07	30.2	0.2	0.00025	20.8	0.1	2.4	2	0	0	2	2	2	2	FAD-NAD(P)-binding
FAD_binding_2	PF00890.19	gi|257051444|ref|YP_003129277.1|	-	3.2e-07	29.5	1.9	2.4e-06	26.6	0.0	2.0	1	1	1	2	2	2	1	FAD	binding	domain
GIDA	PF01134.17	gi|257051444|ref|YP_003129277.1|	-	5.7e-07	28.7	0.6	0.00035	19.5	0.0	2.3	1	1	1	2	2	2	2	Glucose	inhibited	division	protein	A
FAD_binding_3	PF01494.14	gi|257051444|ref|YP_003129277.1|	-	8.8e-07	28.2	3.4	0.00045	19.3	0.0	2.1	1	1	1	2	2	2	2	FAD	binding	domain
Thi4	PF01946.12	gi|257051444|ref|YP_003129277.1|	-	6.7e-06	25.3	0.2	5e-05	22.5	0.0	2.1	2	1	0	2	2	2	1	Thi4	family
FAD_oxidored	PF12831.2	gi|257051444|ref|YP_003129277.1|	-	0.00026	20.2	0.1	0.00026	20.2	0.1	2.0	1	1	1	2	2	2	1	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.1	gi|257051444|ref|YP_003129277.1|	-	0.00074	19.4	0.0	0.0021	18.0	0.0	1.8	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
K_oxygenase	PF13434.1	gi|257051444|ref|YP_003129277.1|	-	0.0011	18.0	0.3	0.4	9.5	0.0	2.1	1	1	1	2	2	2	2	L-lysine	6-monooxygenase	(NADPH-requiring)
Trp_halogenase	PF04820.9	gi|257051444|ref|YP_003129277.1|	-	0.0018	16.9	1.2	0.33	9.5	0.3	2.1	2	0	0	2	2	2	2	Tryptophan	halogenase
Lycopene_cycl	PF05834.7	gi|257051444|ref|YP_003129277.1|	-	0.0026	16.7	0.3	0.026	13.4	0.0	2.0	1	1	1	2	2	2	1	Lycopene	cyclase	protein
Amino_oxidase	PF01593.19	gi|257051444|ref|YP_003129277.1|	-	0.005	15.9	0.0	0.0067	15.5	0.0	1.2	1	0	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
Pyr_redox	PF00070.22	gi|257051444|ref|YP_003129277.1|	-	0.01	16.2	0.8	0.17	12.3	0.2	2.5	2	1	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_7	PF13241.1	gi|257051444|ref|YP_003129277.1|	-	0.11	12.8	0.1	0.17	12.1	0.1	1.6	1	1	0	1	1	1	0	Putative	NAD(P)-binding
TIM	PF00121.13	gi|257051445|ref|YP_003129278.1|	-	5e-19	68.3	0.6	2.5e-12	46.4	0.0	2.0	1	1	1	2	2	2	2	Triosephosphate	isomerase
ThiG	PF05690.9	gi|257051445|ref|YP_003129278.1|	-	0.00021	20.4	4.7	0.00031	19.9	0.7	2.3	2	1	1	3	3	3	1	Thiazole	biosynthesis	protein	ThiG
IGPS	PF00218.16	gi|257051445|ref|YP_003129278.1|	-	0.00068	18.7	0.0	0.0011	18.1	0.0	1.4	1	0	0	1	1	1	1	Indole-3-glycerol	phosphate	synthase
FMN_dh	PF01070.13	gi|257051445|ref|YP_003129278.1|	-	0.0024	16.7	1.1	0.0024	16.7	0.8	1.7	2	0	0	2	2	2	1	FMN-dependent	dehydrogenase
Hydrolase_like	PF13242.1	gi|257051445|ref|YP_003129278.1|	-	0.0038	16.8	0.9	0.23	11.1	0.1	2.6	2	0	0	2	2	2	1	HAD-hyrolase-like
PEP-utilizers_C	PF02896.13	gi|257051445|ref|YP_003129278.1|	-	0.02	13.7	0.5	0.11	11.3	0.0	1.9	2	0	0	2	2	2	0	PEP-utilising	enzyme,	TIM	barrel	domain
Response_reg	PF00072.19	gi|257051446|ref|YP_003129279.1|	-	9.1e-18	64.2	0.8	1.7e-17	63.4	0.5	1.4	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HalX	PF08663.5	gi|257051446|ref|YP_003129279.1|	-	1.4e-13	50.5	6.1	2.7e-13	49.6	4.2	1.4	1	0	0	1	1	1	1	HalX	domain
bZIP_2	PF07716.10	gi|257051446|ref|YP_003129279.1|	-	0.017	14.9	2.1	0.017	14.9	1.5	2.0	1	1	1	2	2	2	0	Basic	region	leucine	zipper
LemA	PF04011.7	gi|257051446|ref|YP_003129279.1|	-	0.047	12.7	0.7	0.066	12.3	0.5	1.2	1	0	0	1	1	1	0	LemA	family
HALZ	PF02183.13	gi|257051446|ref|YP_003129279.1|	-	0.052	13.2	0.2	0.12	12.1	0.1	1.6	1	0	0	1	1	1	0	Homeobox	associated	leucine	zipper
DUF4140	PF13600.1	gi|257051446|ref|YP_003129279.1|	-	0.098	13.1	3.0	0.23	11.9	2.1	1.7	1	1	0	1	1	1	0	N-terminal	domain	of	unknown	function	(DUF4140)
IncA	PF04156.9	gi|257051446|ref|YP_003129279.1|	-	0.16	11.5	2.7	0.23	11.0	1.9	1.3	1	0	0	1	1	1	0	IncA	protein
DUF4337	PF14235.1	gi|257051446|ref|YP_003129279.1|	-	0.35	10.6	2.0	0.53	10.1	1.4	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4337)
TMF_DNA_bd	PF12329.3	gi|257051446|ref|YP_003129279.1|	-	0.54	10.1	7.1	0.92	9.3	4.5	1.6	1	1	0	1	1	1	0	TATA	element	modulatory	factor	1	DNA	binding
DivIC	PF04977.10	gi|257051446|ref|YP_003129279.1|	-	0.88	9.1	5.1	0.55	9.7	1.4	2.1	1	1	1	2	2	2	0	Septum	formation	initiator
APG6	PF04111.7	gi|257051446|ref|YP_003129279.1|	-	0.95	8.4	4.6	1.2	8.1	3.2	1.1	1	0	0	1	1	1	0	Autophagy	protein	Apg6
HTH_3	PF01381.17	gi|257051447|ref|YP_003129280.1|	-	9.5e-11	41.3	0.1	1.3e-10	40.9	0.1	1.2	1	0	0	1	1	1	1	Helix-turn-helix
HTH_31	PF13560.1	gi|257051447|ref|YP_003129280.1|	-	3.3e-10	40.0	0.1	4.9e-10	39.4	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_19	PF12844.2	gi|257051447|ref|YP_003129280.1|	-	5.1e-08	32.8	0.1	7.6e-08	32.2	0.1	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_25	PF13413.1	gi|257051447|ref|YP_003129280.1|	-	7.9e-05	22.2	0.6	0.00012	21.6	0.4	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
Tmemb_cc2	PF10267.4	gi|257051447|ref|YP_003129280.1|	-	0.0025	16.4	2.7	0.0029	16.2	1.9	1.1	1	0	0	1	1	1	1	Predicted	transmembrane	and	coiled-coil	2	protein
DUF3775	PF12616.3	gi|257051447|ref|YP_003129280.1|	-	0.034	13.9	0.3	0.063	13.0	0.1	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3775)
COG2	PF06148.6	gi|257051447|ref|YP_003129280.1|	-	0.091	12.6	1.0	0.15	11.9	0.7	1.4	1	1	0	1	1	1	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
DUF515	PF04415.7	gi|257051447|ref|YP_003129280.1|	-	0.72	8.0	6.1	1.2	7.3	4.2	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF515)
Macoilin	PF09726.4	gi|257051447|ref|YP_003129280.1|	-	0.85	7.8	3.1	0.95	7.6	2.1	1.0	1	0	0	1	1	1	0	Transmembrane	protein
Serglycin	PF04360.7	gi|257051447|ref|YP_003129280.1|	-	0.89	9.2	10.4	1.6	8.4	7.2	1.5	1	1	0	1	1	1	0	Serglycin
LUC7	PF03194.10	gi|257051447|ref|YP_003129280.1|	-	1.1	8.7	4.7	1.1	8.6	0.3	2.2	2	0	0	2	2	2	0	LUC7	N_terminus
Period_C	PF12114.3	gi|257051447|ref|YP_003129280.1|	-	2.9	7.4	9.0	4.4	6.8	6.2	1.4	1	0	0	1	1	1	0	Period	protein	2/3C-terminal	region
DUF162	PF02589.10	gi|257051448|ref|YP_003129281.1|	-	8.9e-20	70.9	0.2	1.4e-19	70.3	0.1	1.3	1	1	0	1	1	1	1	Uncharacterised	ACR,	YkgG	family	COG1556
DUF162	PF02589.10	gi|257051449|ref|YP_003129282.1|	-	8.4e-40	136.3	1.5	1.9e-39	135.1	0.2	2.0	2	0	0	2	2	2	1	Uncharacterised	ACR,	YkgG	family	COG1556
Fer4_8	PF13183.1	gi|257051449|ref|YP_003129282.1|	-	2.3e-09	37.1	4.9	4.9e-09	36.0	3.4	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|257051449|ref|YP_003129282.1|	-	7.8e-09	35.8	5.4	4.5e-06	27.0	0.4	2.8	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|257051449|ref|YP_003129282.1|	-	3.6e-08	33.6	3.8	7.6e-08	32.5	2.6	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|257051449|ref|YP_003129282.1|	-	4.7e-06	26.8	7.1	9.6e-06	25.8	4.9	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|257051449|ref|YP_003129282.1|	-	4.8e-05	23.0	10.5	0.0011	18.6	8.4	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|257051449|ref|YP_003129282.1|	-	8e-05	22.0	13.9	0.00022	20.6	2.0	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_6	PF12837.2	gi|257051449|ref|YP_003129282.1|	-	9.7e-05	22.0	12.0	0.00036	20.2	1.5	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.1	gi|257051449|ref|YP_003129282.1|	-	0.00015	21.9	11.1	0.0017	18.5	8.0	2.2	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|257051449|ref|YP_003129282.1|	-	0.00029	20.5	12.2	0.0048	16.7	2.1	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|257051449|ref|YP_003129282.1|	-	0.00095	18.9	10.9	0.0068	16.2	7.5	2.1	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|257051449|ref|YP_003129282.1|	-	0.0027	17.8	13.9	0.027	14.8	2.6	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_20	PF14691.1	gi|257051449|ref|YP_003129282.1|	-	0.01	15.4	1.3	0.056	13.0	0.0	2.2	2	0	0	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_3	PF12798.2	gi|257051449|ref|YP_003129282.1|	-	0.15	12.6	17.8	0.035	14.6	3.8	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_15	PF13459.1	gi|257051449|ref|YP_003129282.1|	-	0.68	10.5	6.3	1.4	9.5	0.3	3.3	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_16	PF13484.1	gi|257051449|ref|YP_003129282.1|	-	0.93	10.2	12.8	5.6	7.7	8.9	2.2	1	1	0	1	1	1	0	4Fe-4S	double	cluster	binding	domain
TAT_signal	PF10518.4	gi|257051450|ref|YP_003129283.1|	-	0.07	13.1	0.5	0.18	11.9	0.3	1.7	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF1422	PF07226.6	gi|257051451|ref|YP_003129284.1|	-	0.0048	16.6	0.4	0.0057	16.3	0.3	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1422)
MrpF_PhaF	PF04066.8	gi|257051451|ref|YP_003129284.1|	-	0.28	11.5	2.5	0.47	10.7	1.7	1.5	1	1	0	1	1	1	0	Multiple	resistance	and	pH	regulation	protein	F	(MrpF	/	PhaF)
CDP-OH_P_transf	PF01066.16	gi|257051452|ref|YP_003129285.1|	-	4.6e-11	42.9	9.4	1.5e-10	41.3	6.5	1.9	1	1	0	1	1	1	1	CDP-alcohol	phosphatidyltransferase
AAA_18	PF13238.1	gi|257051453|ref|YP_003129286.1|	-	3.1e-21	76.0	0.0	4.1e-21	75.6	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|257051453|ref|YP_003129286.1|	-	6.5e-15	56.0	0.1	9.1e-15	55.5	0.0	1.3	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.1	gi|257051453|ref|YP_003129286.1|	-	1.5e-07	31.3	0.6	0.0078	16.1	0.1	2.1	1	1	1	2	2	2	2	AAA	domain
AAA_28	PF13521.1	gi|257051453|ref|YP_003129286.1|	-	3.8e-05	23.7	1.5	0.00053	19.9	0.1	2.2	1	1	1	2	2	2	1	AAA	domain
SKI	PF01202.17	gi|257051453|ref|YP_003129286.1|	-	0.00076	19.3	0.9	0.0012	18.7	0.1	1.7	2	0	0	2	2	2	1	Shikimate	kinase
AAA_19	PF13245.1	gi|257051453|ref|YP_003129286.1|	-	0.01	15.5	2.1	0.015	14.9	0.3	1.9	2	0	0	2	2	2	0	Part	of	AAA	domain
NTPase_1	PF03266.10	gi|257051453|ref|YP_003129286.1|	-	0.035	13.8	0.0	0.058	13.1	0.0	1.5	2	0	0	2	2	2	0	NTPase
CoaE	PF01121.15	gi|257051453|ref|YP_003129286.1|	-	0.036	13.4	0.3	0.72	9.2	0.0	2.1	2	0	0	2	2	2	0	Dephospho-CoA	kinase
dNK	PF01712.14	gi|257051453|ref|YP_003129286.1|	-	0.039	13.8	0.0	0.052	13.4	0.0	1.2	1	0	0	1	1	1	0	Deoxynucleoside	kinase
AAA_22	PF13401.1	gi|257051453|ref|YP_003129286.1|	-	0.049	13.7	0.1	0.063	13.4	0.1	1.5	1	1	0	1	1	1	0	AAA	domain
AAA	PF00004.24	gi|257051453|ref|YP_003129286.1|	-	0.083	13.0	0.1	0.43	10.7	0.0	1.9	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
ADK	PF00406.17	gi|257051453|ref|YP_003129286.1|	-	0.086	12.7	0.1	6.6	6.6	0.0	2.1	2	0	0	2	2	2	0	Adenylate	kinase
Trns_repr_metal	PF02583.12	gi|257051453|ref|YP_003129286.1|	-	0.11	12.7	0.1	2.3	8.4	0.0	2.3	1	1	0	2	2	2	0	Metal-sensitive	transcriptional	repressor
KaiC	PF06745.8	gi|257051453|ref|YP_003129286.1|	-	0.19	10.8	0.4	0.32	10.0	0.1	1.5	2	0	0	2	2	2	0	KaiC
MobB	PF03205.9	gi|257051453|ref|YP_003129286.1|	-	0.24	11.0	1.0	0.54	9.9	0.5	2.0	1	1	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Aminotran_1_2	PF00155.16	gi|257051454|ref|YP_003129287.1|	-	3.4e-61	207.2	0.0	3.8e-61	207.0	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Cys_Met_Meta_PP	PF01053.15	gi|257051454|ref|YP_003129287.1|	-	0.0016	16.8	0.0	0.0033	15.7	0.0	1.5	2	0	0	2	2	2	1	Cys/Met	metabolism	PLP-dependent	enzyme
Beta_elim_lyase	PF01212.16	gi|257051454|ref|YP_003129287.1|	-	0.029	13.4	0.0	0.19	10.8	0.0	2.2	2	1	0	2	2	2	0	Beta-eliminating	lyase
Alliinase_C	PF04864.8	gi|257051454|ref|YP_003129287.1|	-	0.099	11.2	0.0	0.15	10.6	0.0	1.2	1	0	0	1	1	1	0	Allinase
AAA	PF00004.24	gi|257051455|ref|YP_003129288.1|	-	1.6e-44	151.2	0.1	1.6e-44	151.2	0.0	2.2	3	0	0	3	3	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_2	PF07724.9	gi|257051455|ref|YP_003129288.1|	-	2e-08	34.3	0.3	7.4e-08	32.4	0.0	2.2	2	0	0	2	2	1	1	AAA	domain	(Cdc48	subfamily)
RuvB_N	PF05496.7	gi|257051455|ref|YP_003129288.1|	-	3e-07	29.7	0.1	7.8e-07	28.3	0.0	1.7	1	1	1	2	2	2	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_22	PF13401.1	gi|257051455|ref|YP_003129288.1|	-	6.8e-07	29.4	1.8	3.8e-05	23.8	0.2	2.8	2	1	0	2	2	1	1	AAA	domain
AAA_16	PF13191.1	gi|257051455|ref|YP_003129288.1|	-	4.2e-06	26.8	4.7	0.00045	20.2	0.0	3.4	2	2	2	4	4	4	1	AAA	ATPase	domain
AAA_17	PF13207.1	gi|257051455|ref|YP_003129288.1|	-	1.8e-05	25.5	2.4	5e-05	24.1	0.0	2.6	3	1	0	3	3	2	1	AAA	domain
AAA_5	PF07728.9	gi|257051455|ref|YP_003129288.1|	-	2.3e-05	24.1	2.7	6.8e-05	22.6	0.2	2.7	2	1	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA_33	PF13671.1	gi|257051455|ref|YP_003129288.1|	-	0.0002	21.2	0.1	0.0012	18.6	0.0	2.2	1	1	0	2	2	2	1	AAA	domain
NACHT	PF05729.7	gi|257051455|ref|YP_003129288.1|	-	0.00023	20.8	0.4	0.022	14.3	0.0	2.6	1	1	0	2	2	2	1	NACHT	domain
AAA_19	PF13245.1	gi|257051455|ref|YP_003129288.1|	-	0.00033	20.3	0.3	0.0011	18.6	0.2	1.9	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_14	PF13173.1	gi|257051455|ref|YP_003129288.1|	-	0.00036	20.4	0.1	0.0014	18.4	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
TIP49	PF06068.8	gi|257051455|ref|YP_003129288.1|	-	0.00084	18.1	0.6	0.0024	16.6	0.0	1.9	2	1	0	2	2	2	1	TIP49	C-terminus
IstB_IS21	PF01695.12	gi|257051455|ref|YP_003129288.1|	-	0.0011	18.4	0.0	0.0027	17.1	0.0	1.7	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
Mg_chelatase	PF01078.16	gi|257051455|ref|YP_003129288.1|	-	0.0014	17.8	0.3	0.0062	15.7	0.1	2.0	1	1	1	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
Sigma54_activat	PF00158.21	gi|257051455|ref|YP_003129288.1|	-	0.0021	17.5	0.9	0.041	13.3	0.2	2.8	2	1	0	2	2	1	1	Sigma-54	interaction	domain
ATG16	PF08614.6	gi|257051455|ref|YP_003129288.1|	-	0.0026	17.6	12.5	0.0026	17.6	8.7	2.5	1	1	1	2	2	2	1	Autophagy	protein	16	(ATG16)
AAA_18	PF13238.1	gi|257051455|ref|YP_003129288.1|	-	0.0031	17.7	4.0	0.02	15.1	0.0	2.9	2	1	0	2	2	2	1	AAA	domain
Sigma54_activ_2	PF14532.1	gi|257051455|ref|YP_003129288.1|	-	0.0032	17.5	0.2	0.011	15.8	0.0	2.1	2	1	0	2	2	1	1	Sigma-54	interaction	domain
AAA_11	PF13086.1	gi|257051455|ref|YP_003129288.1|	-	0.0039	16.7	1.0	0.098	12.2	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
AAA_3	PF07726.6	gi|257051455|ref|YP_003129288.1|	-	0.0041	16.7	0.2	0.025	14.1	0.0	2.3	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
GrpE	PF01025.14	gi|257051455|ref|YP_003129288.1|	-	0.0048	16.4	7.5	0.0048	16.4	5.2	2.0	2	0	0	2	2	1	1	GrpE
DUF815	PF05673.8	gi|257051455|ref|YP_003129288.1|	-	0.0051	15.7	0.0	0.011	14.6	0.0	1.7	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
AAA_28	PF13521.1	gi|257051455|ref|YP_003129288.1|	-	0.0052	16.7	1.2	0.012	15.5	0.0	2.4	2	2	0	2	2	2	1	AAA	domain
CPT	PF07931.7	gi|257051455|ref|YP_003129288.1|	-	0.0078	15.8	0.1	0.019	14.5	0.0	1.8	2	0	0	2	2	1	1	Chloramphenicol	phosphotransferase-like	protein
Zeta_toxin	PF06414.7	gi|257051455|ref|YP_003129288.1|	-	0.0079	15.3	0.0	0.022	13.8	0.0	1.8	1	0	0	1	1	1	1	Zeta	toxin
Torsin	PF06309.6	gi|257051455|ref|YP_003129288.1|	-	0.011	15.6	0.1	0.049	13.5	0.0	1.9	2	0	0	2	2	2	0	Torsin
AAA_25	PF13481.1	gi|257051455|ref|YP_003129288.1|	-	0.011	15.0	5.0	0.17	11.2	0.1	3.0	2	1	1	3	3	3	0	AAA	domain
KaiC	PF06745.8	gi|257051455|ref|YP_003129288.1|	-	0.014	14.5	4.5	0.3	10.1	0.0	3.3	2	1	1	3	3	3	0	KaiC
RNA_helicase	PF00910.17	gi|257051455|ref|YP_003129288.1|	-	0.017	15.3	0.0	0.044	13.9	0.0	1.8	1	0	0	1	1	1	0	RNA	helicase
bZIP_1	PF00170.16	gi|257051455|ref|YP_003129288.1|	-	0.021	14.7	14.6	0.088	12.7	6.0	2.6	1	1	1	2	2	2	0	bZIP	transcription	factor
DUF3450	PF11932.3	gi|257051455|ref|YP_003129288.1|	-	0.023	13.9	4.2	0.047	12.9	2.9	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3450)
IncA	PF04156.9	gi|257051455|ref|YP_003129288.1|	-	0.026	14.1	14.1	2.6	7.6	9.9	2.3	1	1	1	2	2	2	0	IncA	protein
NB-ARC	PF00931.17	gi|257051455|ref|YP_003129288.1|	-	0.032	13.0	1.0	0.059	12.2	0.0	1.9	2	0	0	2	2	2	0	NB-ARC	domain
AAA_23	PF13476.1	gi|257051455|ref|YP_003129288.1|	-	0.045	14.0	8.3	8.5	6.6	0.0	2.5	2	0	0	2	2	2	0	AAA	domain
DUF4438	PF14505.1	gi|257051455|ref|YP_003129288.1|	-	0.059	12.1	0.1	0.093	11.4	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4438)
UPF0079	PF02367.12	gi|257051455|ref|YP_003129288.1|	-	0.067	12.8	0.0	0.15	11.6	0.0	1.5	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
DUF3373	PF11853.3	gi|257051455|ref|YP_003129288.1|	-	0.097	11.1	3.7	0.15	10.5	2.6	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3373)
NTPase_1	PF03266.10	gi|257051455|ref|YP_003129288.1|	-	0.11	12.1	2.0	0.64	9.7	0.0	2.8	2	1	1	3	3	3	0	NTPase
ResIII	PF04851.10	gi|257051455|ref|YP_003129288.1|	-	0.15	11.8	2.0	2.4	7.9	0.0	2.4	1	1	1	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
Cep57_CLD_2	PF14197.1	gi|257051455|ref|YP_003129288.1|	-	0.26	11.2	11.3	1.4	8.9	6.7	2.4	2	0	0	2	2	2	0	Centrosome	localisation	domain	of	PPC89
ABC_tran	PF00005.22	gi|257051455|ref|YP_003129288.1|	-	0.3	11.3	0.0	0.3	11.3	0.0	2.8	2	2	0	2	2	2	0	ABC	transporter
vATP-synt_E	PF01991.13	gi|257051455|ref|YP_003129288.1|	-	0.45	9.7	9.0	2.8	7.1	6.3	2.1	1	1	0	1	1	1	0	ATP	synthase	(E/31	kDa)	subunit
Atg14	PF10186.4	gi|257051455|ref|YP_003129288.1|	-	0.86	8.4	9.3	1.4	7.8	6.0	1.6	1	1	1	2	2	2	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
APG6	PF04111.7	gi|257051455|ref|YP_003129288.1|	-	3.3	6.6	15.1	4.7	6.1	9.9	1.6	1	1	0	1	1	1	0	Autophagy	protein	Apg6
CCDC-167	PF15188.1	gi|257051455|ref|YP_003129288.1|	-	4.5	7.2	10.4	3.3	7.7	2.8	3.2	3	0	0	3	3	3	0	Coiled-coil	domain-containing	protein	167
DUF972	PF06156.8	gi|257051455|ref|YP_003129288.1|	-	5.7	7.3	12.1	31	4.9	7.1	2.6	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF972)
Dzip-like_N	PF13815.1	gi|257051455|ref|YP_003129288.1|	-	6.2	6.6	10.3	3.6	7.4	4.9	2.2	2	0	0	2	2	2	0	Iguana/Dzip1-like	DAZ-interacting	protein	N-terminal
HTH_24	PF13412.1	gi|257051456|ref|YP_003129289.1|	-	1.8e-05	24.0	0.0	2.6e-05	23.5	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.2	gi|257051456|ref|YP_003129289.1|	-	0.0009	18.8	0.1	0.0013	18.4	0.1	1.2	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.2	gi|257051456|ref|YP_003129289.1|	-	0.0014	18.3	0.0	0.002	17.8	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
GntR	PF00392.16	gi|257051456|ref|YP_003129289.1|	-	0.0018	17.6	0.1	0.0025	17.2	0.1	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
TFIIE_alpha	PF02002.12	gi|257051456|ref|YP_003129289.1|	-	0.0024	17.3	0.0	0.0031	17.0	0.0	1.1	1	0	0	1	1	1	1	TFIIE	alpha	subunit
TrmB	PF01978.14	gi|257051456|ref|YP_003129289.1|	-	0.0039	16.8	0.1	0.0051	16.4	0.1	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.17	gi|257051456|ref|YP_003129289.1|	-	0.0077	15.9	0.0	0.01	15.5	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.1	gi|257051456|ref|YP_003129289.1|	-	0.0079	16.5	0.1	0.01	16.1	0.1	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_5	PF01022.15	gi|257051456|ref|YP_003129289.1|	-	0.023	14.3	0.1	0.032	13.9	0.0	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_43	PF09904.4	gi|257051456|ref|YP_003129289.1|	-	0.071	12.9	0.0	0.099	12.4	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn	helix
Rrf2	PF02082.15	gi|257051456|ref|YP_003129289.1|	-	0.14	12.2	0.1	0.19	11.8	0.1	1.2	1	0	0	1	1	1	0	Transcriptional	regulator
Metallophos_2	PF12850.2	gi|257051457|ref|YP_003129290.1|	-	2.1e-14	53.6	0.2	3.7e-14	52.8	0.1	1.3	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.23	gi|257051457|ref|YP_003129290.1|	-	5.3e-11	42.2	0.7	7.8e-11	41.7	0.5	1.3	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
AAA_23	PF13476.1	gi|257051458|ref|YP_003129291.1|	-	1.5e-21	77.6	4.5	1.5e-21	77.6	3.1	6.6	1	1	1	2	2	1	1	AAA	domain
AAA_13	PF13166.1	gi|257051458|ref|YP_003129291.1|	-	2e-12	46.4	59.2	0.0004	19.0	5.7	5.1	2	1	2	4	4	4	4	AAA	domain
AAA_21	PF13304.1	gi|257051458|ref|YP_003129291.1|	-	2e-11	44.4	3.6	8.3e-07	29.2	0.1	3.2	3	0	0	3	3	3	2	AAA	domain
AAA_15	PF13175.1	gi|257051458|ref|YP_003129291.1|	-	1.3e-07	31.0	0.8	0.029	13.4	0.0	3.7	4	0	0	4	4	4	2	AAA	ATPase	domain
SMC_N	PF02463.14	gi|257051458|ref|YP_003129291.1|	-	9.7e-07	28.2	54.6	1.1e-05	24.7	37.8	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
SbcCD_C	PF13558.1	gi|257051458|ref|YP_003129291.1|	-	2.3e-05	24.2	0.0	6.8e-05	22.7	0.0	1.8	1	0	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_29	PF13555.1	gi|257051458|ref|YP_003129291.1|	-	3.4e-05	23.2	0.0	6.1e-05	22.4	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
Reo_sigmaC	PF04582.7	gi|257051458|ref|YP_003129291.1|	-	6.3e-05	22.3	17.2	0.00093	18.4	0.3	4.2	4	0	0	4	4	4	2	Reovirus	sigma	C	capsid	protein
Baculo_PEP_C	PF04513.7	gi|257051458|ref|YP_003129291.1|	-	0.00011	22.0	22.3	0.016	15.0	1.2	5.3	3	2	3	7	7	7	2	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DUF3584	PF12128.3	gi|257051458|ref|YP_003129291.1|	-	0.0002	18.8	104.9	0.00089	16.7	30.7	3.8	2	1	2	4	4	4	3	Protein	of	unknown	function	(DUF3584)
EzrA	PF06160.7	gi|257051458|ref|YP_003129291.1|	-	0.0018	16.5	13.3	0.0018	16.5	9.2	4.8	1	1	2	4	4	4	1	Septation	ring	formation	regulator,	EzrA
ATG16	PF08614.6	gi|257051458|ref|YP_003129291.1|	-	0.0044	16.8	12.9	0.0044	16.8	8.9	6.0	2	2	3	5	5	4	1	Autophagy	protein	16	(ATG16)
MscS_porin	PF12795.2	gi|257051458|ref|YP_003129291.1|	-	0.0048	16.2	7.5	0.0048	16.2	5.2	5.2	3	2	1	4	4	2	1	Mechanosensitive	ion	channel	porin	domain
NPV_P10	PF05531.7	gi|257051458|ref|YP_003129291.1|	-	0.0071	16.5	23.4	8.3	6.7	0.1	7.6	4	2	3	8	8	8	0	Nucleopolyhedrovirus	P10	protein
Atg14	PF10186.4	gi|257051458|ref|YP_003129291.1|	-	0.013	14.4	86.7	0.021	13.8	11.4	6.1	1	1	3	5	5	5	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
DUF342	PF03961.8	gi|257051458|ref|YP_003129291.1|	-	0.038	12.4	61.4	0.11	10.8	3.3	5.8	1	1	4	6	6	6	0	Protein	of	unknown	function	(DUF342)
IncA	PF04156.9	gi|257051458|ref|YP_003129291.1|	-	0.051	13.1	128.2	0.4	10.2	18.3	6.4	1	1	6	7	7	7	0	IncA	protein
DUF948	PF06103.6	gi|257051458|ref|YP_003129291.1|	-	0.063	13.1	11.2	0.25	11.2	0.5	5.1	4	1	1	5	5	5	0	Bacterial	protein	of	unknown	function	(DUF948)
FliJ	PF02050.11	gi|257051458|ref|YP_003129291.1|	-	0.085	12.9	0.0	0.085	12.9	0.0	7.7	3	3	5	8	8	8	0	Flagellar	FliJ	protein
AAA_33	PF13671.1	gi|257051458|ref|YP_003129291.1|	-	0.42	10.4	0.0	0.42	10.4	0.0	4.0	3	1	0	3	3	3	0	AAA	domain
AAA_27	PF13514.1	gi|257051458|ref|YP_003129291.1|	-	0.51	7.9	116.4	0.37	8.4	0.1	5.1	2	1	3	5	5	5	0	AAA	domain
ABC_tran	PF00005.22	gi|257051458|ref|YP_003129291.1|	-	0.62	10.3	0.0	0.62	10.3	0.0	4.8	3	2	0	3	3	2	0	ABC	transporter
BLOC1_2	PF10046.4	gi|257051458|ref|YP_003129291.1|	-	0.7	10.0	48.2	5.9	7.0	5.6	8.3	3	3	5	9	9	9	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Spc7	PF08317.6	gi|257051458|ref|YP_003129291.1|	-	1.1	7.7	86.4	0.16	10.5	6.2	5.4	2	2	3	5	5	5	0	Spc7	kinetochore	protein
GAS	PF13851.1	gi|257051458|ref|YP_003129291.1|	-	1.9	7.6	79.8	0.46	9.6	13.5	5.7	2	2	4	6	6	6	0	Growth-arrest	specific	micro-tubule	binding
AAA_22	PF13401.1	gi|257051458|ref|YP_003129291.1|	-	2.7	8.1	0.0	2.7	8.1	0.0	4.9	5	2	0	5	5	5	0	AAA	domain
MCPsignal	PF00015.16	gi|257051458|ref|YP_003129291.1|	-	2.8	7.4	40.7	1.1	8.7	5.7	4.4	2	1	2	4	4	4	0	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
TPR_MLP1_2	PF07926.7	gi|257051458|ref|YP_003129291.1|	-	9.5	5.9	98.8	0.64	9.7	7.3	8.4	1	1	5	6	6	5	0	TPR/MLP1/MLP2-like	protein
DNA_pol_B	PF00136.16	gi|257051462|ref|YP_003129295.1|	-	9.6e-64	215.8	0.0	2.3e-63	214.5	0.0	1.6	1	0	0	1	1	1	1	DNA	polymerase	family	B
DNA_pol_B_exo1	PF03104.14	gi|257051462|ref|YP_003129295.1|	-	6.2e-29	100.8	0.0	2.8e-21	75.7	0.0	2.3	2	0	0	2	2	2	2	DNA	polymerase	family	B,	exonuclease	domain
Hom_end	PF05204.9	gi|257051462|ref|YP_003129295.1|	-	1e-07	31.9	0.0	6.9e-05	22.7	0.0	2.6	2	0	0	2	2	2	2	Homing	endonuclease
Hom_end_hint	PF05203.11	gi|257051462|ref|YP_003129295.1|	-	7.5e-07	29.1	0.1	1.7e-06	27.9	0.1	1.6	1	0	0	1	1	1	1	Hom_end-associated	Hint
Hint	PF01079.15	gi|257051462|ref|YP_003129295.1|	-	1.3e-06	27.8	0.0	2.5e-06	26.8	0.0	1.4	1	0	0	1	1	1	1	Hint	module
LAGLIDADG_3	PF14528.1	gi|257051462|ref|YP_003129295.1|	-	1e-05	25.6	0.1	0.088	13.0	0.0	2.9	2	0	0	2	2	2	2	LAGLIDADG-like	domain
ABC_tran	PF00005.22	gi|257051463|ref|YP_003129296.1|	-	1.4e-16	61.0	0.0	4.4e-16	59.4	0.0	1.8	1	1	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|257051463|ref|YP_003129296.1|	-	7.9e-07	29.3	0.0	8.5e-05	22.6	0.0	2.1	1	1	0	2	2	2	1	AAA	domain
SMC_N	PF02463.14	gi|257051463|ref|YP_003129296.1|	-	2.6e-06	26.8	0.6	0.011	14.9	0.0	2.3	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_17	PF13207.1	gi|257051463|ref|YP_003129296.1|	-	0.00011	23.0	1.4	0.0011	19.7	0.0	2.5	2	2	0	2	2	2	1	AAA	domain
AAA	PF00004.24	gi|257051463|ref|YP_003129296.1|	-	0.00012	22.3	0.0	0.059	13.5	0.0	2.4	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_29	PF13555.1	gi|257051463|ref|YP_003129296.1|	-	0.0015	18.0	0.1	0.0027	17.2	0.1	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_5	PF07728.9	gi|257051463|ref|YP_003129296.1|	-	0.0016	18.1	0.6	0.67	9.6	0.0	2.6	3	0	0	3	3	3	2	AAA	domain	(dynein-related	subfamily)
AAA_22	PF13401.1	gi|257051463|ref|YP_003129296.1|	-	0.0023	18.0	0.1	0.62	10.2	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
Zeta_toxin	PF06414.7	gi|257051463|ref|YP_003129296.1|	-	0.015	14.3	0.0	0.029	13.4	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
AAA_33	PF13671.1	gi|257051463|ref|YP_003129296.1|	-	0.018	14.9	0.0	0.026	14.3	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_25	PF13481.1	gi|257051463|ref|YP_003129296.1|	-	0.021	14.2	0.0	0.055	12.8	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
AAA_23	PF13476.1	gi|257051463|ref|YP_003129296.1|	-	0.027	14.7	6.0	0.13	12.5	0.2	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_13	PF13166.1	gi|257051463|ref|YP_003129296.1|	-	0.048	12.1	0.1	0.068	11.6	0.1	1.3	1	1	0	1	1	1	0	AAA	domain
AAA_18	PF13238.1	gi|257051463|ref|YP_003129296.1|	-	0.055	13.7	1.2	0.11	12.7	0.1	2.2	3	2	0	3	3	2	0	AAA	domain
AAA_14	PF13173.1	gi|257051463|ref|YP_003129296.1|	-	0.14	12.0	0.0	1.6	8.6	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_10	PF12846.2	gi|257051463|ref|YP_003129296.1|	-	0.46	9.8	7.3	5.5	6.3	5.0	2.0	1	1	0	1	1	1	0	AAA-like	domain
UPF0051	PF01458.12	gi|257051464|ref|YP_003129297.1|	-	6.8e-70	235.0	0.9	9.2e-70	234.6	0.6	1.2	1	0	0	1	1	1	1	Uncharacterized	protein	family	(UPF0051)
UPF0051	PF01458.12	gi|257051465|ref|YP_003129298.1|	-	2.4e-66	223.5	1.8	2.9e-66	223.2	1.2	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	family	(UPF0051)
TAT_signal	PF10518.4	gi|257051466|ref|YP_003129299.1|	-	0.018	15.0	1.3	0.018	15.0	0.9	1.5	1	1	1	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DsbC	PF11412.3	gi|257051466|ref|YP_003129299.1|	-	0.072	12.9	0.0	0.14	11.9	0.0	1.4	1	0	0	1	1	1	0	Disulphide	bond	corrector	protein	DsbC
UCR_Fe-S_N	PF10399.4	gi|257051466|ref|YP_003129299.1|	-	1.9	7.7	5.6	11	5.2	3.9	2.0	1	1	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
Not3	PF04065.10	gi|257051467|ref|YP_003129300.1|	-	0.0066	15.7	1.7	0.0091	15.2	0.9	1.4	1	1	0	1	1	1	1	Not1	N-terminal	domain,	CCR4-Not	complex	component
Phage_tail_U	PF06141.6	gi|257051467|ref|YP_003129300.1|	-	0.18	11.8	2.2	0.48	10.4	0.2	2.1	1	1	1	2	2	2	0	Phage	minor	tail	protein	U
Fe_dep_repress	PF01325.14	gi|257051468|ref|YP_003129301.1|	-	3.3e-18	65.3	0.1	6.5e-18	64.4	0.0	1.6	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Fe_dep_repr_C	PF02742.10	gi|257051468|ref|YP_003129301.1|	-	1.1e-11	44.2	0.0	2.9e-11	42.9	0.0	1.7	2	0	0	2	2	2	1	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
HTH_27	PF13463.1	gi|257051468|ref|YP_003129301.1|	-	1.4e-05	25.2	0.1	5.6e-05	23.3	0.0	1.9	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
MarR_2	PF12802.2	gi|257051468|ref|YP_003129301.1|	-	2.3e-05	23.9	0.0	4.8e-05	22.9	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.1	gi|257051468|ref|YP_003129301.1|	-	0.00016	21.0	0.0	0.00027	20.2	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.17	gi|257051468|ref|YP_003129301.1|	-	0.00042	19.9	0.0	0.00063	19.3	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_AsnC-type	PF13404.1	gi|257051468|ref|YP_003129301.1|	-	0.0005	19.5	0.0	0.0014	18.1	0.0	1.8	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
TrmB	PF01978.14	gi|257051468|ref|YP_003129301.1|	-	0.001	18.7	0.0	0.0016	18.1	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.2	gi|257051468|ref|YP_003129301.1|	-	0.0014	18.4	0.0	0.0025	17.5	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_Crp_2	PF13545.1	gi|257051468|ref|YP_003129301.1|	-	0.0014	18.3	0.0	0.0037	17.0	0.0	1.9	2	1	0	2	2	2	1	Crp-like	helix-turn-helix	domain
Rrf2	PF02082.15	gi|257051468|ref|YP_003129301.1|	-	0.0049	16.9	0.0	0.0083	16.2	0.0	1.4	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_IclR	PF09339.5	gi|257051468|ref|YP_003129301.1|	-	0.0076	15.8	0.0	0.014	14.9	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_23	PF13384.1	gi|257051468|ref|YP_003129301.1|	-	0.024	14.3	0.0	0.053	13.1	0.0	1.6	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_13	PF11972.3	gi|257051468|ref|YP_003129301.1|	-	0.063	13.1	0.0	0.13	12.1	0.0	1.4	1	0	0	1	1	1	0	HTH	DNA	binding	domain
HTH_1	PF00126.22	gi|257051468|ref|YP_003129301.1|	-	0.087	12.5	0.0	0.23	11.2	0.0	1.7	2	0	0	2	2	2	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
DUF1054	PF06335.7	gi|257051469|ref|YP_003129302.1|	-	0.077	12.6	0.0	0.12	11.9	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1054)
DUF1249	PF06853.7	gi|257051470|ref|YP_003129303.1|	-	0.029	13.9	0.0	0.051	13.1	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1249)
CSD	PF00313.17	gi|257051473|ref|YP_003129306.1|	-	3.4e-17	61.9	0.6	5.1e-17	61.4	0.4	1.3	1	1	0	1	1	1	1	'Cold-shock'	DNA-binding	domain
S1-like	PF14444.1	gi|257051473|ref|YP_003129306.1|	-	0.065	12.9	0.3	0.11	12.1	0.2	1.5	1	1	0	1	1	1	0	S1-like
OB_RNB	PF08206.6	gi|257051473|ref|YP_003129306.1|	-	0.17	11.4	3.0	0.24	10.9	2.1	1.3	1	0	0	1	1	1	0	Ribonuclease	B	OB	domain
MarR	PF01047.17	gi|257051474|ref|YP_003129307.1|	-	2.8e-05	23.7	0.0	4e-05	23.2	0.0	1.2	1	0	0	1	1	1	1	MarR	family
B-block_TFIIIC	PF04182.7	gi|257051474|ref|YP_003129307.1|	-	0.00028	20.6	0.0	0.00031	20.5	0.0	1.3	1	0	0	1	1	1	1	B-block	binding	subunit	of	TFIIIC
HTH_27	PF13463.1	gi|257051474|ref|YP_003129307.1|	-	0.0018	18.5	0.0	0.0025	18.1	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
MarR_2	PF12802.2	gi|257051474|ref|YP_003129307.1|	-	0.0028	17.2	0.0	0.0043	16.6	0.0	1.3	1	0	0	1	1	1	1	MarR	family
SBP_bac_6	PF13343.1	gi|257051475|ref|YP_003129308.1|	-	8.5e-19	67.8	0.2	1.3e-18	67.2	0.1	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.20	gi|257051475|ref|YP_003129308.1|	-	1.4e-08	34.8	7.3	4.2e-08	33.2	5.0	1.7	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.1	gi|257051475|ref|YP_003129308.1|	-	5.1e-06	26.2	0.3	9.8e-06	25.3	0.1	1.5	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.4	gi|257051475|ref|YP_003129308.1|	-	0.33	11.0	2.0	0.61	10.2	1.4	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
BPD_transp_1	PF00528.17	gi|257051476|ref|YP_003129309.1|	-	4.5e-30	104.5	33.9	1.4e-17	63.8	7.8	2.9	2	1	0	2	2	2	2	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.22	gi|257051477|ref|YP_003129310.1|	-	4.1e-33	114.5	0.0	6.2e-33	113.9	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
TOBE_2	PF08402.5	gi|257051477|ref|YP_003129310.1|	-	1.1e-12	47.8	0.5	4.7e-12	45.7	0.3	2.2	1	0	0	1	1	1	1	TOBE	domain
AAA_21	PF13304.1	gi|257051477|ref|YP_003129310.1|	-	3.3e-09	37.1	0.0	1.9e-05	24.8	0.0	2.1	1	1	0	2	2	2	2	AAA	domain
TOBE	PF03459.12	gi|257051477|ref|YP_003129310.1|	-	0.00038	20.4	1.8	0.0013	18.7	0.1	2.8	3	0	0	3	3	2	1	TOBE	domain
AAA	PF00004.24	gi|257051477|ref|YP_003129310.1|	-	0.00082	19.5	0.0	0.0036	17.5	0.0	1.9	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.1	gi|257051477|ref|YP_003129310.1|	-	0.0025	17.9	0.1	0.007	16.5	0.1	1.8	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|257051477|ref|YP_003129310.1|	-	0.003	16.8	0.0	0.11	11.6	0.0	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.1	gi|257051477|ref|YP_003129310.1|	-	0.0037	17.2	0.3	0.013	15.5	0.0	1.8	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_33	PF13671.1	gi|257051477|ref|YP_003129310.1|	-	0.0082	16.0	0.1	0.077	12.8	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
DUF258	PF03193.11	gi|257051477|ref|YP_003129310.1|	-	0.012	14.8	0.0	0.019	14.1	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
Rad17	PF03215.10	gi|257051477|ref|YP_003129310.1|	-	0.016	13.9	0.0	0.022	13.4	0.0	1.1	1	0	0	1	1	1	0	Rad17	cell	cycle	checkpoint	protein
AAA_17	PF13207.1	gi|257051477|ref|YP_003129310.1|	-	0.016	16.0	0.0	0.07	13.9	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
Zeta_toxin	PF06414.7	gi|257051477|ref|YP_003129310.1|	-	0.017	14.2	0.0	0.034	13.2	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
AAA_28	PF13521.1	gi|257051477|ref|YP_003129310.1|	-	0.029	14.3	0.1	0.073	13.0	0.1	1.7	1	0	0	1	1	1	0	AAA	domain
AAA_25	PF13481.1	gi|257051477|ref|YP_003129310.1|	-	0.039	13.3	0.5	0.11	11.8	0.3	2.0	1	1	0	1	1	1	0	AAA	domain
AAA_14	PF13173.1	gi|257051477|ref|YP_003129310.1|	-	0.043	13.7	0.0	0.087	12.7	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_29	PF13555.1	gi|257051477|ref|YP_003129310.1|	-	0.068	12.7	0.2	0.16	11.5	0.1	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
Miro	PF08477.8	gi|257051477|ref|YP_003129310.1|	-	0.085	13.3	0.0	0.18	12.2	0.0	1.5	1	0	0	1	1	1	0	Miro-like	protein
AAA_24	PF13479.1	gi|257051477|ref|YP_003129310.1|	-	0.092	12.3	0.2	0.29	10.7	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
AAA_18	PF13238.1	gi|257051477|ref|YP_003129310.1|	-	0.11	12.8	0.0	0.43	10.8	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
SRP54	PF00448.17	gi|257051477|ref|YP_003129310.1|	-	0.11	11.9	0.1	0.22	10.9	0.0	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
PduV-EutP	PF10662.4	gi|257051477|ref|YP_003129310.1|	-	0.14	11.6	0.0	0.22	11.0	0.0	1.2	1	0	0	1	1	1	0	Ethanolamine	utilisation	-	propanediol	utilisation
Mg_chelatase	PF01078.16	gi|257051477|ref|YP_003129310.1|	-	0.14	11.2	0.0	0.37	9.9	0.0	1.7	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
AAA_15	PF13175.1	gi|257051477|ref|YP_003129310.1|	-	0.16	10.9	0.0	1.5	7.7	0.0	1.9	2	0	0	2	2	2	0	AAA	ATPase	domain
AIRS_C	PF02769.17	gi|257051478|ref|YP_003129311.1|	-	5.8e-17	62.1	1.4	1e-16	61.3	0.9	1.5	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.19	gi|257051478|ref|YP_003129311.1|	-	1.3e-07	31.7	1.4	2.8e-07	30.6	0.0	2.2	2	1	0	2	2	2	1	AIR	synthase	related	protein,	N-terminal	domain
AMP-binding	PF00501.23	gi|257051479|ref|YP_003129312.1|	-	1.9e-80	270.3	0.4	2.2e-80	270.0	0.3	1.0	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.1	gi|257051479|ref|YP_003129312.1|	-	5.2e-16	59.3	0.1	1.4e-15	57.9	0.0	1.8	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
MR_MLE	PF01188.16	gi|257051480|ref|YP_003129313.1|	-	1.6e-17	63.7	3.1	6.8e-17	61.7	2.1	2.1	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	C-terminal	domain
MR_MLE_C	PF13378.1	gi|257051480|ref|YP_003129313.1|	-	3.6e-14	52.6	1.7	1.3e-13	50.8	0.3	2.5	3	0	0	3	3	3	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.11	gi|257051480|ref|YP_003129313.1|	-	0.0069	16.3	0.4	0.85	9.6	0.1	3.3	2	1	0	2	2	2	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
UbiA	PF01040.13	gi|257051481|ref|YP_003129314.1|	-	3.7e-40	137.7	20.7	4.7e-40	137.4	14.3	1.2	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
ECH	PF00378.15	gi|257051482|ref|YP_003129315.1|	-	7.4e-48	162.8	0.0	1.1e-47	162.1	0.0	1.3	1	1	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase	family
PRC	PF05239.11	gi|257051483|ref|YP_003129316.1|	-	1.2e-11	44.2	0.2	1.6e-11	43.8	0.1	1.1	1	0	0	1	1	1	1	PRC-barrel	domain
TrkA_N	PF02254.13	gi|257051484|ref|YP_003129317.1|	-	2.4e-21	75.8	1.7	8.1e-21	74.1	1.2	2.0	1	0	0	1	1	1	1	TrkA-N	domain
DHH	PF01368.15	gi|257051484|ref|YP_003129317.1|	-	1.4e-12	47.5	0.6	4e-12	45.9	0.4	1.8	1	0	0	1	1	1	1	DHH	family
ApbA	PF02558.11	gi|257051484|ref|YP_003129317.1|	-	1.7e-07	30.7	0.0	8.9e-07	28.4	0.0	2.2	1	1	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
Saccharop_dh	PF03435.13	gi|257051484|ref|YP_003129317.1|	-	6.1e-07	28.7	0.1	1.1e-06	27.8	0.1	1.5	1	1	0	1	1	1	1	Saccharopine	dehydrogenase
F420_oxidored	PF03807.12	gi|257051484|ref|YP_003129317.1|	-	3.5e-06	27.3	0.1	1.7e-05	25.1	0.1	2.2	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_Gly3P_dh_N	PF01210.18	gi|257051484|ref|YP_003129317.1|	-	5.8e-05	22.8	0.0	0.00013	21.7	0.0	1.6	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
NAD_binding_2	PF03446.10	gi|257051484|ref|YP_003129317.1|	-	6.7e-05	22.7	0.0	0.00014	21.7	0.0	1.6	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
DHHA1	PF02272.14	gi|257051484|ref|YP_003129317.1|	-	0.00045	19.8	0.0	0.0011	18.5	0.0	1.7	1	0	0	1	1	1	1	DHHA1	domain
NAD_binding_7	PF13241.1	gi|257051484|ref|YP_003129317.1|	-	0.00062	19.9	2.6	0.0015	18.7	0.6	2.3	1	1	1	2	2	2	1	Putative	NAD(P)-binding
UDPG_MGDP_dh_N	PF03721.9	gi|257051484|ref|YP_003129317.1|	-	0.00076	18.9	0.0	0.0033	16.8	0.0	2.0	1	1	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
IlvN	PF07991.7	gi|257051484|ref|YP_003129317.1|	-	0.0018	17.6	0.1	0.0039	16.5	0.1	1.5	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
3HCDH_N	PF02737.13	gi|257051484|ref|YP_003129317.1|	-	0.0032	17.1	0.1	0.011	15.3	0.0	2.0	1	1	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
FAD_binding_3	PF01494.14	gi|257051484|ref|YP_003129317.1|	-	0.0055	15.8	0.0	0.0095	15.0	0.0	1.4	1	0	0	1	1	1	1	FAD	binding	domain
XdhC_C	PF13478.1	gi|257051484|ref|YP_003129317.1|	-	0.0068	16.7	1.5	0.045	14.0	0.1	2.6	1	1	1	2	2	2	1	XdhC	Rossmann	domain
ThiF	PF00899.16	gi|257051484|ref|YP_003129317.1|	-	0.0099	15.6	0.8	0.028	14.2	0.5	2.0	1	1	0	1	1	1	1	ThiF	family
2-Hacid_dh_C	PF02826.14	gi|257051484|ref|YP_003129317.1|	-	0.02	14.0	0.0	0.052	12.6	0.0	1.7	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_8	PF13450.1	gi|257051484|ref|YP_003129317.1|	-	0.027	14.4	0.0	0.08	12.9	0.0	1.8	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
APS_kinase	PF01583.15	gi|257051484|ref|YP_003129317.1|	-	0.039	13.5	0.1	0.088	12.4	0.1	1.5	1	0	0	1	1	1	0	Adenylylsulphate	kinase
DAO	PF01266.19	gi|257051484|ref|YP_003129317.1|	-	0.044	12.6	0.4	0.13	11.1	0.0	2.0	3	0	0	3	3	3	0	FAD	dependent	oxidoreductase
ADH_zinc_N	PF00107.21	gi|257051484|ref|YP_003129317.1|	-	0.076	12.5	0.1	0.56	9.7	0.0	2.5	2	1	1	3	3	3	0	Zinc-binding	dehydrogenase
adh_short	PF00106.20	gi|257051484|ref|YP_003129317.1|	-	0.5	10.2	9.3	0.34	10.8	0.9	3.3	2	1	1	3	3	3	0	short	chain	dehydrogenase
DUF2092	PF09865.4	gi|257051485|ref|YP_003129318.1|	-	0.021	13.9	0.0	0.037	13.1	0.0	1.4	1	0	0	1	1	1	0	Predicted	periplasmic	protein	(DUF2092)
DUF1281	PF06924.6	gi|257051485|ref|YP_003129318.1|	-	0.13	11.6	0.0	0.25	10.7	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1281)
Dsh_C	PF12316.3	gi|257051486|ref|YP_003129319.1|	-	0.072	13.1	1.4	0.093	12.8	1.0	1.2	1	0	0	1	1	1	0	Segment	polarity	protein	dishevelled	(Dsh)	C	terminal
CDC45	PF02724.9	gi|257051486|ref|YP_003129319.1|	-	0.22	9.4	0.7	0.25	9.3	0.5	1.0	1	0	0	1	1	1	0	CDC45-like	protein
COG2	PF06148.6	gi|257051486|ref|YP_003129319.1|	-	0.23	11.3	1.2	0.28	11.0	0.1	1.7	2	0	0	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
DUF2797	PF10977.3	gi|257051487|ref|YP_003129320.1|	-	5.9e-41	140.6	1.5	8.8e-40	136.7	1.1	1.9	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF2797)
PQQ_3	PF13570.1	gi|257051488|ref|YP_003129321.1|	-	1.6e-44	148.9	25.4	8e-10	38.6	0.0	8.2	8	1	0	8	8	8	6	PQQ-like	domain
PQQ	PF01011.16	gi|257051488|ref|YP_003129321.1|	-	4.7e-38	126.8	10.9	2.6e-09	36.1	0.0	6.9	7	0	0	7	7	7	5	PQQ	enzyme	repeat
PQQ_2	PF13360.1	gi|257051488|ref|YP_003129321.1|	-	6.9e-36	123.8	6.0	4.8e-17	62.2	0.5	3.6	1	1	2	3	3	3	3	PQQ-like	domain
TAT_signal	PF10518.4	gi|257051488|ref|YP_003129321.1|	-	0.0042	16.9	5.4	0.011	15.6	3.8	1.7	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
SUKH-4	PF14435.1	gi|257051488|ref|YP_003129321.1|	-	0.012	15.2	2.2	18	4.9	0.1	4.5	3	1	1	4	4	4	0	SUKH-4	immunity	protein
PepSY	PF03413.14	gi|257051488|ref|YP_003129321.1|	-	0.013	16.1	3.3	0.58	10.8	0.1	3.3	4	1	0	4	4	4	0	Peptidase	propeptide	and	YPEB	domain
WD40	PF00400.27	gi|257051488|ref|YP_003129321.1|	-	0.032	14.1	0.7	1.5	8.7	0.0	3.7	4	0	0	4	4	4	0	WD	domain,	G-beta	repeat
Exotox-A_bind	PF09101.5	gi|257051488|ref|YP_003129321.1|	-	0.065	12.3	0.0	0.27	10.3	0.0	1.9	2	0	0	2	2	2	0	Exotoxin	A	binding
TFIIB	PF00382.14	gi|257051489|ref|YP_003129322.1|	-	8.7e-07	28.6	0.2	1.6e-06	27.8	0.1	1.4	1	1	0	1	1	1	1	Transcription	factor	TFIIB	repeat
HTH_28	PF13518.1	gi|257051489|ref|YP_003129322.1|	-	0.00025	20.9	0.0	0.00069	19.5	0.0	1.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_AsnC-type	PF13404.1	gi|257051489|ref|YP_003129322.1|	-	0.00043	19.7	1.1	0.037	13.5	0.1	2.3	2	0	0	2	2	2	2	AsnC-type	helix-turn-helix	domain
HTH_23	PF13384.1	gi|257051489|ref|YP_003129322.1|	-	0.00047	19.7	0.1	0.0012	18.4	0.0	1.6	2	0	0	2	2	2	1	Homeodomain-like	domain
Sigma70_r4	PF04545.11	gi|257051489|ref|YP_003129322.1|	-	0.0063	15.8	0.2	0.23	10.7	0.0	2.2	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_11	PF08279.7	gi|257051489|ref|YP_003129322.1|	-	0.021	14.4	0.2	0.27	10.8	0.0	2.2	2	0	0	2	2	2	0	HTH	domain
HTH_30	PF13556.1	gi|257051489|ref|YP_003129322.1|	-	0.052	13.1	0.0	0.12	12.0	0.0	1.6	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
HTH_24	PF13412.1	gi|257051489|ref|YP_003129322.1|	-	0.11	11.9	0.1	0.27	10.6	0.0	1.7	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
CTP_transf_2	PF01467.21	gi|257051490|ref|YP_003129323.1|	-	4.1e-14	52.9	0.0	5.1e-13	49.3	0.0	2.0	1	1	0	1	1	1	1	Cytidylyltransferase
FAD_syn	PF06574.7	gi|257051490|ref|YP_003129323.1|	-	0.0016	18.1	0.1	0.019	14.6	0.0	2.1	2	0	0	2	2	2	1	FAD	synthetase
TrmB	PF01978.14	gi|257051491|ref|YP_003129324.1|	-	4.1e-07	29.6	0.1	6.1e-07	29.0	0.1	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.2	gi|257051491|ref|YP_003129324.1|	-	2.7e-06	27.1	0.1	8.2e-06	25.5	0.0	1.8	1	1	1	2	2	2	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|257051491|ref|YP_003129324.1|	-	0.00073	18.8	0.0	0.0012	18.1	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TFIIE_alpha	PF02002.12	gi|257051491|ref|YP_003129324.1|	-	0.00086	18.7	0.0	0.0014	18.0	0.0	1.5	1	1	0	1	1	1	1	TFIIE	alpha	subunit
HTH_IclR	PF09339.5	gi|257051491|ref|YP_003129324.1|	-	0.0027	17.2	0.0	0.004	16.7	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_5	PF01022.15	gi|257051491|ref|YP_003129324.1|	-	0.0034	17.0	0.0	0.0052	16.4	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
Fe_dep_repress	PF01325.14	gi|257051491|ref|YP_003129324.1|	-	0.0048	16.8	0.0	0.0089	15.9	0.0	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
GntR	PF00392.16	gi|257051491|ref|YP_003129324.1|	-	0.0084	15.5	0.1	0.016	14.6	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_27	PF13463.1	gi|257051491|ref|YP_003129324.1|	-	0.01	16.1	0.0	0.021	15.1	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Rrf2	PF02082.15	gi|257051491|ref|YP_003129324.1|	-	0.026	14.6	0.0	0.045	13.8	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
MarR_2	PF12802.2	gi|257051491|ref|YP_003129324.1|	-	0.026	14.1	0.1	0.064	12.9	0.0	1.6	1	0	0	1	1	1	0	MarR	family
GCS2	PF04107.8	gi|257051492|ref|YP_003129325.1|	-	1e-70	238.1	0.2	1.2e-70	237.8	0.1	1.1	1	0	0	1	1	1	1	Glutamate-cysteine	ligase	family	2(GCS2)
Fibrillarin	PF01269.12	gi|257051493|ref|YP_003129326.1|	-	1.3e-56	191.0	0.0	1.5e-56	190.8	0.0	1.0	1	0	0	1	1	1	1	Fibrillarin
Nop	PF01798.13	gi|257051494|ref|YP_003129327.1|	-	5e-41	139.4	0.0	7.7e-41	138.8	0.0	1.3	1	0	0	1	1	1	1	Putative	snoRNA	binding	domain
UPF0047	PF01894.12	gi|257051495|ref|YP_003129328.1|	-	1.9e-35	121.1	0.0	2.3e-35	120.9	0.0	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0047
SpoVR	PF04293.8	gi|257051496|ref|YP_003129329.1|	-	1.6e-79	267.3	0.2	1.7e-68	230.9	0.0	2.1	2	0	0	2	2	2	2	SpoVR	like	protein
DUF444	PF04285.7	gi|257051497|ref|YP_003129330.1|	-	8.7e-99	331.0	0.1	9.7e-99	330.8	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF444)
AAA_PrkA	PF08298.6	gi|257051498|ref|YP_003129331.1|	-	1.5e-13	50.1	0.0	9.5e-11	40.9	0.0	3.1	2	1	0	2	2	2	2	PrkA	AAA	domain
PrkA	PF06798.7	gi|257051498|ref|YP_003129331.1|	-	7.7e-08	31.9	0.1	2.6e-07	30.2	0.0	1.9	1	1	0	1	1	1	1	PrkA	serine	protein	kinase	C-terminal	domain
PrkA	PF06798.7	gi|257051499|ref|YP_003129332.1|	-	9.7e-75	251.1	5.6	9.7e-75	251.1	3.9	2.3	3	0	0	3	3	3	1	PrkA	serine	protein	kinase	C-terminal	domain
AAA_PrkA	PF08298.6	gi|257051499|ref|YP_003129332.1|	-	6e-65	219.2	0.0	8.7e-65	218.7	0.0	1.2	1	0	0	1	1	1	1	PrkA	AAA	domain
UPF0179	PF03684.8	gi|257051501|ref|YP_003129334.1|	-	9.2e-48	161.4	0.0	1e-47	161.2	0.0	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0179)
DDE_Tnp_1_6	PF13751.1	gi|257051501|ref|YP_003129334.1|	-	0.0099	15.8	0.8	0.015	15.2	0.1	1.6	2	0	0	2	2	2	1	Transposase	DDE	domain
Asparaginase_2	PF01112.13	gi|257051502|ref|YP_003129335.1|	-	1.2e-52	178.6	13.0	1.6e-52	178.2	9.0	1.0	1	0	0	1	1	1	1	Asparaginase
DUF4278	PF14105.1	gi|257051503|ref|YP_003129336.1|	-	0.015	15.2	0.1	0.11	12.5	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4278)
bPH_3	PF14470.1	gi|257051503|ref|YP_003129336.1|	-	0.059	13.6	0.0	0.11	12.8	0.0	1.5	1	1	0	1	1	1	0	Bacterial	PH	domain
HTH_15	PF12324.3	gi|257051503|ref|YP_003129336.1|	-	0.075	12.6	0.0	0.88	9.2	0.0	2.2	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	alkylmercury	lyase
CPSase_sm_chain	PF00988.17	gi|257051504|ref|YP_003129337.1|	-	4.7e-36	123.1	0.0	1.8e-35	121.2	0.0	2.0	2	0	0	2	2	2	1	Carbamoyl-phosphate	synthase	small	chain,	CPSase	domain
GATase	PF00117.23	gi|257051504|ref|YP_003129337.1|	-	1.9e-34	118.7	0.0	2.5e-34	118.3	0.0	1.2	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.8	gi|257051504|ref|YP_003129337.1|	-	3.5e-06	26.6	0.1	0.0009	18.7	0.1	2.3	1	1	0	1	1	1	1	Peptidase	C26
DJ-1_PfpI	PF01965.19	gi|257051504|ref|YP_003129337.1|	-	0.015	14.7	0.0	0.03	13.7	0.0	1.6	1	0	0	1	1	1	0	DJ-1/PfpI	family
HTH_AsnC-type	PF13404.1	gi|257051505|ref|YP_003129338.1|	-	2.9e-16	58.7	0.6	5.5e-16	57.8	0.4	1.5	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.1	gi|257051505|ref|YP_003129338.1|	-	2.7e-14	52.2	0.0	4.9e-14	51.4	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
AsnC_trans_reg	PF01037.16	gi|257051505|ref|YP_003129338.1|	-	2.5e-08	33.4	1.0	4e-08	32.8	0.7	1.3	1	0	0	1	1	1	1	AsnC	family
HTH_20	PF12840.2	gi|257051505|ref|YP_003129338.1|	-	5.4e-05	22.9	0.0	9.4e-05	22.1	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
Sigma70_r4_2	PF08281.7	gi|257051505|ref|YP_003129338.1|	-	0.00067	19.0	0.0	0.0022	17.3	0.0	1.8	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_Tnp_ISL3	PF13542.1	gi|257051505|ref|YP_003129338.1|	-	0.0015	17.6	0.1	0.0098	15.0	0.0	2.1	2	0	0	2	2	2	1	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_IclR	PF09339.5	gi|257051505|ref|YP_003129338.1|	-	0.0017	17.8	0.0	0.0033	16.9	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.2	gi|257051505|ref|YP_003129338.1|	-	0.0023	17.5	0.0	0.0042	16.7	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_DeoR	PF08220.7	gi|257051505|ref|YP_003129338.1|	-	0.0034	16.8	0.2	0.0059	16.1	0.1	1.4	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_11	PF08279.7	gi|257051505|ref|YP_003129338.1|	-	0.0039	16.7	0.0	0.006	16.1	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
MarR	PF01047.17	gi|257051505|ref|YP_003129338.1|	-	0.0046	16.6	0.1	0.011	15.3	0.0	1.6	2	0	0	2	2	1	1	MarR	family
Sigma70_r4	PF04545.11	gi|257051505|ref|YP_003129338.1|	-	0.0067	15.7	0.1	0.014	14.6	0.0	1.6	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_27	PF13463.1	gi|257051505|ref|YP_003129338.1|	-	0.01	16.1	0.2	0.027	14.8	0.0	1.7	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
HTH_23	PF13384.1	gi|257051505|ref|YP_003129338.1|	-	0.022	14.4	0.0	0.035	13.7	0.0	1.4	1	0	0	1	1	1	0	Homeodomain-like	domain
HrcA_DNA-bdg	PF03444.10	gi|257051505|ref|YP_003129338.1|	-	0.023	14.1	0.0	0.046	13.1	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
FaeA	PF04703.7	gi|257051505|ref|YP_003129338.1|	-	0.028	14.5	0.0	0.046	13.8	0.0	1.4	1	0	0	1	1	1	0	FaeA-like	protein
TrmB	PF01978.14	gi|257051505|ref|YP_003129338.1|	-	0.028	14.1	0.0	0.055	13.1	0.0	1.5	1	1	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
DUF2726	PF10881.3	gi|257051505|ref|YP_003129338.1|	-	0.059	12.9	0.1	0.082	12.5	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2726)
GYD	PF08734.6	gi|257051505|ref|YP_003129338.1|	-	0.062	13.0	0.4	0.27	10.9	0.0	2.1	2	1	1	3	3	3	0	GYD	domain
HTH_Mga	PF08280.6	gi|257051505|ref|YP_003129338.1|	-	0.081	12.6	0.0	0.23	11.2	0.0	1.6	1	1	1	2	2	2	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
GerE	PF00196.14	gi|257051505|ref|YP_003129338.1|	-	0.089	12.1	0.0	0.39	10.0	0.0	1.9	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	luxR	family
FeoC	PF09012.5	gi|257051505|ref|YP_003129338.1|	-	0.089	12.5	0.0	0.15	11.7	0.0	1.4	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
DUF746	PF05344.6	gi|257051505|ref|YP_003129338.1|	-	0.13	11.8	0.1	0.45	10.0	0.0	1.9	2	0	0	2	2	2	0	Domain	of	Unknown	Function	(DUF746)
NUDIX	PF00293.23	gi|257051506|ref|YP_003129339.1|	-	1.4e-12	47.4	0.2	1.8e-12	47.0	0.1	1.2	1	0	0	1	1	1	1	NUDIX	domain
NUDIX_4	PF14815.1	gi|257051506|ref|YP_003129339.1|	-	0.0041	16.5	0.1	0.0083	15.5	0.0	1.5	2	0	0	2	2	2	1	NUDIX	domain
HMA	PF00403.21	gi|257051507|ref|YP_003129340.1|	-	3.1e-18	65.6	0.4	3.4e-18	65.5	0.3	1.0	1	0	0	1	1	1	1	Heavy-metal-associated	domain
DUF2271	PF10029.4	gi|257051507|ref|YP_003129340.1|	-	0.0085	15.5	0.0	0.01	15.3	0.0	1.1	1	0	0	1	1	1	1	Predicted	periplasmic	protein	(DUF2271)
DUF59	PF01883.14	gi|257051507|ref|YP_003129340.1|	-	0.046	13.7	0.1	0.074	13.0	0.1	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF59
DUF2997	PF11211.3	gi|257051507|ref|YP_003129340.1|	-	0.05	12.9	1.2	0.063	12.6	0.5	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2997)
Thioredoxin_3	PF13192.1	gi|257051507|ref|YP_003129340.1|	-	0.07	12.9	0.8	0.099	12.4	0.5	1.5	1	1	0	1	1	1	0	Thioredoxin	domain
HATPase_c	PF02518.21	gi|257051508|ref|YP_003129341.1|	-	4.1e-14	52.2	0.2	7.7e-14	51.3	0.1	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.1	gi|257051508|ref|YP_003129341.1|	-	9.5e-11	41.5	0.1	2e-10	40.5	0.1	1.5	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
PAS	PF00989.19	gi|257051508|ref|YP_003129341.1|	-	2.7e-05	23.9	0.0	6.8e-05	22.6	0.0	1.7	1	0	0	1	1	1	1	PAS	fold
PAS_9	PF13426.1	gi|257051508|ref|YP_003129341.1|	-	0.00014	22.1	0.0	0.00057	20.2	0.0	2.1	1	1	0	1	1	1	1	PAS	domain
PAS_4	PF08448.5	gi|257051508|ref|YP_003129341.1|	-	0.00018	21.5	1.6	0.0022	18.0	0.4	3.0	2	1	0	2	2	2	1	PAS	fold
HisKA	PF00512.20	gi|257051508|ref|YP_003129341.1|	-	0.0094	15.9	1.2	0.018	14.9	0.1	2.1	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
Myosin_N	PF02736.14	gi|257051508|ref|YP_003129341.1|	-	0.011	15.3	1.4	0.016	14.9	0.4	1.7	2	0	0	2	2	2	0	Myosin	N-terminal	SH3-like	domain
HATPase_c_5	PF14501.1	gi|257051508|ref|YP_003129341.1|	-	0.012	15.3	0.0	0.019	14.6	0.0	1.3	1	0	0	1	1	1	0	GHKL	domain
PAS_8	PF13188.1	gi|257051508|ref|YP_003129341.1|	-	0.082	12.8	0.0	0.28	11.0	0.0	1.9	1	0	0	1	1	1	0	PAS	domain
HATPase_c_3	PF13589.1	gi|257051508|ref|YP_003129341.1|	-	0.13	11.8	0.0	0.23	11.1	0.0	1.3	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Lactamase_B	PF00753.22	gi|257051511|ref|YP_003129344.1|	-	2.5e-23	82.7	1.4	3.7e-23	82.2	1.0	1.3	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_5	PF14597.1	gi|257051511|ref|YP_003129344.1|	-	1.2e-07	31.3	0.0	1.5e-07	30.9	0.0	1.3	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.2	gi|257051511|ref|YP_003129344.1|	-	3.7e-05	23.3	0.0	4.9e-05	22.9	0.0	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
TrkA_N	PF02254.13	gi|257051512|ref|YP_003129345.1|	-	0.00053	19.9	0.8	0.00061	19.7	0.6	1.2	1	0	0	1	1	1	1	TrkA-N	domain
GMP_synt_C	PF00958.17	gi|257051513|ref|YP_003129346.1|	-	1e-29	102.0	0.3	2.2e-29	100.9	0.1	1.6	2	0	0	2	2	2	1	GMP	synthase	C	terminal	domain
NAD_synthase	PF02540.12	gi|257051513|ref|YP_003129346.1|	-	1.5e-08	33.8	0.0	3.4e-05	22.8	0.0	2.2	2	0	0	2	2	2	2	NAD	synthase
tRNA_Me_trans	PF03054.11	gi|257051513|ref|YP_003129346.1|	-	9.4e-05	21.1	0.0	0.0028	16.2	0.0	2.2	2	0	0	2	2	2	1	tRNA	methyl	transferase
Asn_synthase	PF00733.16	gi|257051513|ref|YP_003129346.1|	-	0.00046	19.7	0.1	0.0011	18.5	0.0	1.7	2	0	0	2	2	2	1	Asparagine	synthase
QueC	PF06508.8	gi|257051513|ref|YP_003129346.1|	-	0.0032	16.7	0.0	0.013	14.7	0.0	1.9	2	0	0	2	2	2	1	Queuosine	biosynthesis	protein	QueC
ThiI	PF02568.9	gi|257051513|ref|YP_003129346.1|	-	0.0052	16.2	0.0	0.014	14.8	0.0	1.8	1	1	0	1	1	1	1	Thiamine	biosynthesis	protein	(ThiI)
CTP_synth_N	PF06418.9	gi|257051514|ref|YP_003129347.1|	-	1.2e-127	424.7	0.1	1.6e-127	424.2	0.1	1.1	1	0	0	1	1	1	1	CTP	synthase	N-terminus
GATase	PF00117.23	gi|257051514|ref|YP_003129347.1|	-	1e-47	162.0	0.0	2e-47	161.1	0.0	1.5	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
CbiA	PF01656.18	gi|257051514|ref|YP_003129347.1|	-	3.8e-08	32.9	0.0	6.4e-08	32.2	0.0	1.3	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
Peptidase_C26	PF07722.8	gi|257051514|ref|YP_003129347.1|	-	7.7e-06	25.4	0.0	1.8e-05	24.2	0.0	1.7	1	1	0	1	1	1	1	Peptidase	C26
PspA_IM30	PF04012.7	gi|257051516|ref|YP_003129349.1|	-	2.8e-31	108.6	30.4	3.8e-31	108.1	21.1	1.2	1	0	0	1	1	1	1	PspA/IM30	family
Snf7	PF03357.16	gi|257051516|ref|YP_003129349.1|	-	8.5e-05	21.9	15.0	8.5e-05	21.9	10.4	4.1	1	1	2	3	3	3	1	Snf7
DUF2576	PF10845.3	gi|257051516|ref|YP_003129349.1|	-	0.021	13.9	0.3	4.8	6.4	0.0	2.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2576)
ERM	PF00769.14	gi|257051516|ref|YP_003129349.1|	-	0.023	14.2	39.4	0.011	15.2	25.7	1.6	1	1	1	2	2	2	0	Ezrin/radixin/moesin	family
DUF972	PF06156.8	gi|257051516|ref|YP_003129349.1|	-	0.029	14.7	24.6	0.7	10.2	4.0	3.5	1	1	3	4	4	4	0	Protein	of	unknown	function	(DUF972)
Peptidase_M2	PF01401.13	gi|257051516|ref|YP_003129349.1|	-	0.1	10.7	1.4	0.13	10.4	1.0	1.1	1	0	0	1	1	1	0	Angiotensin-converting	enzyme
DUF948	PF06103.6	gi|257051516|ref|YP_003129349.1|	-	0.15	11.9	8.6	0.66	9.8	2.3	3.0	2	1	1	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF948)
HMG_box_5	PF14887.1	gi|257051516|ref|YP_003129349.1|	-	0.18	11.5	0.2	0.18	11.5	0.1	2.7	1	1	1	3	3	3	0	HMG	(high	mobility	group)	box	5
IncA	PF04156.9	gi|257051516|ref|YP_003129349.1|	-	0.2	11.2	34.1	3.1	7.3	13.1	2.9	1	1	2	3	3	3	0	IncA	protein
Spc7	PF08317.6	gi|257051516|ref|YP_003129349.1|	-	0.35	9.4	25.8	0.04	12.5	14.2	1.9	1	1	1	2	2	2	0	Spc7	kinetochore	protein
DUF2217	PF10265.4	gi|257051516|ref|YP_003129349.1|	-	0.56	8.9	12.3	0.74	8.5	8.5	1.1	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2217)
DUF3810	PF12725.2	gi|257051516|ref|YP_003129349.1|	-	0.79	8.5	10.3	0.078	11.8	1.9	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3810)
AAA_13	PF13166.1	gi|257051516|ref|YP_003129349.1|	-	0.88	7.9	21.9	0.49	8.8	13.7	1.5	1	1	1	2	2	2	0	AAA	domain
DUF2935	PF11155.3	gi|257051516|ref|YP_003129349.1|	-	0.89	9.6	8.5	4.6	7.3	1.0	2.4	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF2935)
APG6	PF04111.7	gi|257051516|ref|YP_003129349.1|	-	1	8.3	37.5	0.077	12.0	16.0	3.0	1	1	1	2	2	2	0	Autophagy	protein	Apg6
DUF3584	PF12128.3	gi|257051516|ref|YP_003129349.1|	-	1.1	6.5	37.8	1.9	5.7	26.2	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
YlqD	PF11068.3	gi|257051516|ref|YP_003129349.1|	-	1.2	9.1	29.8	1.7	8.7	9.5	2.9	1	1	2	3	3	3	0	YlqD	protein
Flagellin_C	PF00700.16	gi|257051516|ref|YP_003129349.1|	-	2	8.6	14.4	1.6	8.9	2.0	3.8	1	1	2	3	3	3	0	Bacterial	flagellin	C-terminal	helical	region
NPV_P10	PF05531.7	gi|257051516|ref|YP_003129349.1|	-	2.1	8.6	13.3	21	5.4	2.2	4.0	2	1	1	3	3	3	0	Nucleopolyhedrovirus	P10	protein
DUF342	PF03961.8	gi|257051516|ref|YP_003129349.1|	-	2.1	6.6	21.2	6.5	5.0	2.5	2.4	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF342)
ATG_C	PF09333.6	gi|257051516|ref|YP_003129349.1|	-	2.5	8.3	5.4	3.2	7.9	0.0	2.9	1	1	1	2	2	2	0	ATG	C	terminal	domain
COG5	PF10392.4	gi|257051516|ref|YP_003129349.1|	-	2.6	8.0	13.4	3.9	7.4	5.4	2.8	1	1	2	3	3	3	0	Golgi	transport	complex	subunit	5
DUF4200	PF13863.1	gi|257051516|ref|YP_003129349.1|	-	3.4	7.6	35.9	0.45	10.4	12.9	3.5	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4200)
V_ATPase_I	PF01496.14	gi|257051516|ref|YP_003129349.1|	-	4.5	5.0	21.0	6.7	4.4	1.6	1.8	1	1	1	2	2	2	0	V-type	ATPase	116kDa	subunit	family
Osmo_CC	PF08946.5	gi|257051516|ref|YP_003129349.1|	-	5.9	7.0	26.1	0.085	12.8	1.3	5.1	3	1	3	6	6	5	0	Osmosensory	transporter	coiled	coil
Filament	PF00038.16	gi|257051516|ref|YP_003129349.1|	-	6.9	6.0	38.2	1.3	8.4	3.7	2.9	1	1	1	2	2	1	0	Intermediate	filament	protein
Syntaxin-6_N	PF09177.6	gi|257051516|ref|YP_003129349.1|	-	7.3	7.0	22.1	3.4	8.1	2.0	3.9	1	1	3	4	4	4	0	Syntaxin	6,	N-terminal
ADIP	PF11559.3	gi|257051516|ref|YP_003129349.1|	-	9.3	6.1	31.2	1.6	8.6	7.0	3.1	1	1	2	3	3	3	0	Afadin-	and	alpha	-actinin-Binding
Baculo_PEP_C	PF04513.7	gi|257051516|ref|YP_003129349.1|	-	9.6	6.0	14.1	12	5.6	0.5	3.5	1	1	2	3	3	3	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DUF2892	PF11127.3	gi|257051517|ref|YP_003129350.1|	-	3.2e-16	58.9	1.9	3.9e-16	58.6	1.3	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2892)
DUF2975	PF11188.3	gi|257051517|ref|YP_003129350.1|	-	0.059	13.0	1.4	0.071	12.8	1.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2975)
DUF3995	PF13160.1	gi|257051517|ref|YP_003129350.1|	-	0.087	12.8	2.1	0.099	12.6	1.5	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3995)
VMA21	PF09446.5	gi|257051517|ref|YP_003129350.1|	-	0.19	11.6	2.9	0.42	10.5	2.0	1.7	1	1	0	1	1	1	0	VMA21-like	domain
TctB	PF07331.6	gi|257051517|ref|YP_003129350.1|	-	0.37	10.4	5.9	0.5	10.0	4.1	1.1	1	0	0	1	1	1	0	Tripartite	tricarboxylate	transporter	TctB	family
DUF4383	PF14325.1	gi|257051517|ref|YP_003129350.1|	-	0.74	9.8	5.8	0.31	11.0	0.7	1.8	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4383)
IncA	PF04156.9	gi|257051517|ref|YP_003129350.1|	-	2.5	7.6	6.5	3	7.4	4.5	1.1	1	0	0	1	1	1	0	IncA	protein
tRNA-Thr_ED	PF08915.6	gi|257051518|ref|YP_003129351.1|	-	4.2e-49	166.0	0.0	8.2e-49	165.1	0.0	1.5	1	0	0	1	1	1	1	Archaea-specific	editing	domain	of	threonyl-tRNA	synthetase
tRNA-synt_2b	PF00587.20	gi|257051518|ref|YP_003129351.1|	-	5.2e-24	84.7	0.7	8.3e-24	84.0	0.5	1.2	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
HGTP_anticodon	PF03129.15	gi|257051518|ref|YP_003129351.1|	-	2.2e-19	69.1	0.3	7.2e-19	67.5	0.1	2.0	2	0	0	2	2	2	1	Anticodon	binding	domain
Glycoamylase	PF10091.4	gi|257051518|ref|YP_003129351.1|	-	0.043	12.8	0.0	0.073	12.1	0.0	1.3	1	0	0	1	1	1	0	Putative	glucoamylase
Usp	PF00582.21	gi|257051519|ref|YP_003129352.1|	-	2e-34	118.7	0.3	2.2e-34	118.6	0.2	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
Toprim_3	PF13362.1	gi|257051519|ref|YP_003129352.1|	-	0.0079	16.4	1.0	0.018	15.2	0.3	1.8	1	1	0	1	1	1	1	Toprim	domain
Ribosomal_S21	PF01165.15	gi|257051519|ref|YP_003129352.1|	-	0.12	11.8	0.0	0.19	11.2	0.0	1.3	1	0	0	1	1	1	0	Ribosomal	protein	S21
AIRS_C	PF02769.17	gi|257051520|ref|YP_003129353.1|	-	4.4e-19	68.9	0.0	7.2e-19	68.3	0.0	1.4	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.19	gi|257051520|ref|YP_003129353.1|	-	4.6e-13	49.2	1.3	1e-12	48.0	0.9	1.6	1	0	0	1	1	1	1	AIR	synthase	related	protein,	N-terminal	domain
SCP2_2	PF13530.1	gi|257051521|ref|YP_003129354.1|	-	4.5e-59	199.4	0.1	5.7e-59	199.1	0.1	1.1	1	0	0	1	1	1	1	Sterol	carrier	protein	domain
Acetyltransf_9	PF13527.1	gi|257051521|ref|YP_003129354.1|	-	2.5e-26	92.0	0.6	1.5e-25	89.5	0.0	2.2	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.1	gi|257051521|ref|YP_003129354.1|	-	0.0096	16.0	0.0	0.041	14.0	0.0	1.9	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Peptidase_M50	PF02163.17	gi|257051522|ref|YP_003129355.1|	-	1.6e-11	43.5	13.6	2.7e-10	39.5	9.4	2.2	1	1	0	1	1	1	1	Peptidase	family	M50
ABC2_membrane_5	PF13346.1	gi|257051522|ref|YP_003129355.1|	-	0.36	10.0	3.8	0.24	10.6	1.0	1.8	2	0	0	2	2	2	0	ABC-2	family	transporter	protein
TraB	PF01963.12	gi|257051523|ref|YP_003129356.1|	-	1.6e-39	135.9	0.0	1e-20	74.3	0.0	2.3	2	0	0	2	2	2	2	TraB	family
Hydrolase	PF00702.21	gi|257051523|ref|YP_003129356.1|	-	0.02	15.2	0.0	0.053	13.9	0.0	1.6	2	0	0	2	2	2	0	haloacid	dehalogenase-like	hydrolase
Methyltransf_11	PF08241.7	gi|257051524|ref|YP_003129357.1|	-	1.7e-11	44.4	0.0	3e-11	43.6	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|257051524|ref|YP_003129357.1|	-	9.8e-06	25.8	0.0	1.6e-05	25.2	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|257051524|ref|YP_003129357.1|	-	2.7e-05	23.9	0.0	6.4e-05	22.7	0.0	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|257051524|ref|YP_003129357.1|	-	0.00031	20.7	0.9	0.007	16.3	0.2	2.5	2	1	0	2	2	2	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|257051524|ref|YP_003129357.1|	-	0.0014	19.1	0.0	0.0055	17.2	0.0	2.1	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|257051524|ref|YP_003129357.1|	-	0.0022	17.6	0.0	0.013	15.1	0.0	2.0	1	1	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|257051524|ref|YP_003129357.1|	-	0.0055	15.8	0.0	0.0073	15.4	0.0	1.2	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
RrnaAD	PF00398.15	gi|257051524|ref|YP_003129357.1|	-	0.012	14.5	0.0	0.017	14.1	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
Methyltransf_12	PF08242.7	gi|257051524|ref|YP_003129357.1|	-	0.017	15.5	0.0	0.045	14.2	0.0	1.8	1	1	0	1	1	1	0	Methyltransferase	domain
FtsJ	PF01728.14	gi|257051524|ref|YP_003129357.1|	-	0.02	14.8	0.0	0.024	14.6	0.0	1.2	1	0	0	1	1	1	0	FtsJ-like	methyltransferase
DUF3349	PF11829.3	gi|257051524|ref|YP_003129357.1|	-	0.076	13.4	0.1	5	7.6	0.0	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3349)
ATP-grasp_2	PF08442.5	gi|257051525|ref|YP_003129358.1|	-	4.1e-63	212.4	0.2	6.3e-63	211.8	0.1	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_5	PF13549.1	gi|257051525|ref|YP_003129358.1|	-	9.2e-21	74.0	1.9	1.6e-20	73.2	0.6	1.8	2	0	0	2	2	2	1	ATP-grasp	domain
CPSase_L_D2	PF02786.12	gi|257051525|ref|YP_003129358.1|	-	2.7e-13	49.6	2.7	1.4e-10	40.8	0.3	2.8	3	0	0	3	3	3	2	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
Ligase_CoA	PF00549.14	gi|257051525|ref|YP_003129358.1|	-	2.4e-11	43.4	0.5	5.6e-11	42.2	0.4	1.5	1	0	0	1	1	1	1	CoA-ligase
ATP-grasp_4	PF13535.1	gi|257051525|ref|YP_003129358.1|	-	1.5e-09	37.8	0.1	4.4e-09	36.3	0.1	1.7	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp	PF02222.17	gi|257051525|ref|YP_003129358.1|	-	3.7e-06	26.4	0.0	7.1e-06	25.4	0.0	1.4	1	0	0	1	1	1	1	ATP-grasp	domain
GARS_A	PF01071.14	gi|257051525|ref|YP_003129358.1|	-	1.3e-05	24.9	0.3	2.4e-05	23.9	0.2	1.4	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
RimK	PF08443.6	gi|257051525|ref|YP_003129358.1|	-	0.026	14.0	0.0	0.044	13.2	0.0	1.4	1	0	0	1	1	1	0	RimK-like	ATP-grasp	domain
ATPgrasp_Ter	PF15632.1	gi|257051525|ref|YP_003129358.1|	-	0.033	12.9	0.0	0.056	12.1	0.0	1.3	1	0	0	1	1	1	0	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
VirK	PF06903.7	gi|257051525|ref|YP_003129358.1|	-	0.047	13.4	0.1	0.31	10.8	0.0	2.1	2	0	0	2	2	2	0	VirK	protein
CoA_binding	PF02629.14	gi|257051526|ref|YP_003129359.1|	-	4.5e-24	84.7	0.5	4.5e-24	84.7	0.3	2.0	3	0	0	3	3	3	1	CoA	binding	domain
Ligase_CoA	PF00549.14	gi|257051526|ref|YP_003129359.1|	-	4.3e-15	55.6	1.5	4.3e-15	55.6	1.0	1.9	2	0	0	2	2	2	1	CoA-ligase
Succ_CoA_lig	PF13607.1	gi|257051526|ref|YP_003129359.1|	-	1.1e-09	38.0	0.1	1.9e-09	37.2	0.0	1.4	1	0	0	1	1	1	1	Succinyl-CoA	ligase	like	flavodoxin	domain
CoA_binding_2	PF13380.1	gi|257051526|ref|YP_003129359.1|	-	1.1e-07	32.0	3.1	4.8e-07	29.9	0.0	2.3	2	1	0	2	2	2	1	CoA	binding	domain
GFO_IDH_MocA	PF01408.17	gi|257051526|ref|YP_003129359.1|	-	0.0057	17.1	0.3	0.045	14.2	0.1	2.3	2	0	0	2	2	2	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
DZR	PF12773.2	gi|257051528|ref|YP_003129361.1|	-	0.0018	18.0	0.4	0.0034	17.1	0.3	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-TFIIB	PF13453.1	gi|257051528|ref|YP_003129361.1|	-	0.0064	15.6	0.6	0.014	14.5	0.4	1.6	1	0	0	1	1	1	1	Transcription	factor	zinc-finger
TF_Zn_Ribbon	PF08271.7	gi|257051528|ref|YP_003129361.1|	-	0.017	14.3	2.1	0.038	13.3	1.4	1.6	1	0	0	1	1	1	0	TFIIB	zinc-binding
Nudix_N_2	PF14803.1	gi|257051528|ref|YP_003129361.1|	-	0.018	14.7	0.7	0.041	13.5	0.5	1.6	1	0	0	1	1	1	0	Nudix	N-terminal
Lar_restr_allev	PF14354.1	gi|257051528|ref|YP_003129361.1|	-	0.018	15.3	0.4	0.029	14.6	0.3	1.5	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
Ribosomal_S27e	PF01667.12	gi|257051528|ref|YP_003129361.1|	-	0.038	13.5	0.5	0.058	12.9	0.3	1.3	1	0	0	1	1	1	0	Ribosomal	protein	S27
Zn-ribbon_8	PF09723.5	gi|257051528|ref|YP_003129361.1|	-	0.098	12.6	1.2	0.31	11.0	0.8	1.9	1	1	0	1	1	1	0	Zinc	ribbon	domain
OrfB_Zn_ribbon	PF07282.6	gi|257051528|ref|YP_003129361.1|	-	0.12	12.0	0.5	0.19	11.4	0.3	1.3	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zf-ribbon_3	PF13248.1	gi|257051528|ref|YP_003129361.1|	-	0.14	11.3	5.1	1.8	7.8	3.6	2.4	1	1	1	2	2	2	0	zinc-ribbon	domain
TFIIS_C	PF01096.13	gi|257051528|ref|YP_003129361.1|	-	0.19	11.3	0.5	4.4	7.0	0.0	2.3	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zf-C4_Topoisom	PF01396.14	gi|257051528|ref|YP_003129361.1|	-	0.28	10.7	1.2	1.8	8.1	0.1	2.1	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
zinc_ribbon_2	PF13240.1	gi|257051528|ref|YP_003129361.1|	-	0.76	9.3	3.9	14	5.3	0.3	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
UPF0547	PF10571.4	gi|257051528|ref|YP_003129361.1|	-	1.6	8.4	3.9	9.4	6.0	2.7	2.1	1	1	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
zf-NADH-PPase	PF09297.6	gi|257051528|ref|YP_003129361.1|	-	1.8	8.1	4.8	18	4.9	0.7	2.6	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
GDPD	PF03009.12	gi|257051531|ref|YP_003129364.1|	-	3e-30	105.5	0.1	7.1e-21	74.8	0.0	2.0	1	1	1	2	2	2	2	Glycerophosphoryl	diester	phosphodiesterase	family
GDPD_2	PF13653.1	gi|257051531|ref|YP_003129364.1|	-	0.21	11.8	2.0	0.34	11.1	0.1	2.5	2	0	0	2	2	2	0	Glycerophosphoryl	diester	phosphodiesterase	family
DUF4131	PF13567.1	gi|257051532|ref|YP_003129365.1|	-	2.9	7.2	15.1	0.39	10.0	0.9	3.1	1	1	3	4	4	4	0	Domain	of	unknown	function	(DUF4131)
Pkinase	PF00069.20	gi|257051533|ref|YP_003129366.1|	-	3e-11	42.9	0.0	6.1e-11	41.9	0.0	1.4	1	1	0	1	1	1	1	Protein	kinase	domain
HEAT	PF02985.17	gi|257051533|ref|YP_003129366.1|	-	0.0096	15.9	0.3	0.021	14.9	0.2	1.6	1	0	0	1	1	1	1	HEAT	repeat
HEAT_2	PF13646.1	gi|257051533|ref|YP_003129366.1|	-	0.026	14.8	0.1	0.053	13.8	0.1	1.4	1	0	0	1	1	1	0	HEAT	repeats
Pkinase_Tyr	PF07714.12	gi|257051533|ref|YP_003129366.1|	-	0.031	13.3	0.0	0.052	12.6	0.0	1.3	1	1	0	1	1	1	0	Protein	tyrosine	kinase
DUF2019	PF09450.5	gi|257051533|ref|YP_003129366.1|	-	0.049	13.4	0.1	28	4.6	0.0	3.3	3	1	0	3	3	3	0	Domain	of	unknown	function	(DUF2019)
Kinase-like	PF14531.1	gi|257051533|ref|YP_003129366.1|	-	0.21	10.5	0.0	0.3	9.9	0.0	1.3	1	0	0	1	1	1	0	Kinase-like
MCPsignal	PF00015.16	gi|257051534|ref|YP_003129367.1|	-	3e-48	164.1	56.7	6.7e-45	153.2	22.7	3.3	2	1	1	3	3	3	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
HAMP	PF00672.20	gi|257051534|ref|YP_003129367.1|	-	5.5e-12	45.6	8.1	1e-11	44.8	1.4	6.9	7	1	0	7	7	7	2	HAMP	domain
PhageMin_Tail	PF10145.4	gi|257051534|ref|YP_003129367.1|	-	0.0026	17.4	5.6	0.0026	17.4	3.9	3.3	3	0	0	3	3	3	1	Phage-related	minor	tail	protein
V_ATPase_I	PF01496.14	gi|257051534|ref|YP_003129367.1|	-	0.19	9.5	24.4	0.1	10.4	13.3	2.4	2	1	0	2	2	2	0	V-type	ATPase	116kDa	subunit	family
DUF4200	PF13863.1	gi|257051534|ref|YP_003129367.1|	-	0.32	10.9	29.2	1.2	9.1	4.5	4.8	3	2	2	5	5	5	0	Domain	of	unknown	function	(DUF4200)
DUF1664	PF07889.7	gi|257051534|ref|YP_003129367.1|	-	1.3	8.8	29.4	0.9	9.3	3.3	5.3	1	1	1	5	5	5	0	Protein	of	unknown	function	(DUF1664)
Prominin	PF05478.6	gi|257051534|ref|YP_003129367.1|	-	1.4	6.3	17.6	0.14	9.6	6.2	3.0	2	1	1	3	3	3	0	Prominin
IncA	PF04156.9	gi|257051534|ref|YP_003129367.1|	-	2.1	7.9	30.7	1.8	8.0	0.1	5.1	3	1	1	4	4	3	0	IncA	protein
DUF948	PF06103.6	gi|257051534|ref|YP_003129367.1|	-	2.1	8.2	33.1	0.96	9.3	0.1	7.0	4	2	2	6	6	6	0	Bacterial	protein	of	unknown	function	(DUF948)
Mnd1	PF03962.10	gi|257051534|ref|YP_003129367.1|	-	4.5	6.9	35.5	0.75	9.4	4.7	3.6	2	1	1	3	3	3	0	Mnd1	family
Seryl_tRNA_N	PF02403.17	gi|257051534|ref|YP_003129367.1|	-	5.8	6.9	31.5	2.5	8.1	0.4	5.9	2	1	3	5	5	5	0	Seryl-tRNA	synthetase	N-terminal	domain
AATF-Che1	PF13339.1	gi|257051534|ref|YP_003129367.1|	-	7.6	6.6	26.1	4.1	7.5	2.6	4.7	3	2	2	5	5	5	0	Apoptosis	antagonizing	transcription	factor
Laminin_II	PF06009.7	gi|257051534|ref|YP_003129367.1|	-	8.5	6.1	38.1	2.9	7.6	0.4	5.6	2	2	3	6	6	6	0	Laminin	Domain	II
Bac_rhodopsin	PF01036.13	gi|257051535|ref|YP_003129368.1|	-	5.8e-45	153.3	20.4	6.6e-45	153.1	14.2	1.0	1	0	0	1	1	1	1	Bacteriorhodopsin-like	protein
3HCDH	PF00725.17	gi|257051536|ref|YP_003129369.1|	-	4.9e-21	74.9	0.1	1.5e-20	73.3	0.0	1.8	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	C-terminal	domain
3HCDH_N	PF02737.13	gi|257051536|ref|YP_003129369.1|	-	1.6e-15	57.2	0.1	7.1e-08	32.2	0.0	3.1	3	0	0	3	3	3	3	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Histidinol_dh	PF00815.15	gi|257051537|ref|YP_003129370.1|	-	5.7e-149	496.2	5.0	6.6e-149	496.0	3.5	1.0	1	0	0	1	1	1	1	Histidinol	dehydrogenase
HSCB_C	PF07743.8	gi|257051537|ref|YP_003129370.1|	-	1.8	9.0	5.8	8.2	6.9	0.9	3.2	2	1	1	3	3	3	0	HSCB	C-terminal	oligomerisation	domain
HTH_20	PF12840.2	gi|257051538|ref|YP_003129371.1|	-	8.9e-14	51.0	0.0	1.6e-13	50.2	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|257051538|ref|YP_003129371.1|	-	5.1e-07	28.9	0.0	7.9e-07	28.3	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.2	gi|257051538|ref|YP_003129371.1|	-	1.9e-05	24.2	0.0	3.5e-05	23.3	0.0	1.4	1	0	0	1	1	1	1	MarR	family
DUF2513	PF10711.4	gi|257051538|ref|YP_003129371.1|	-	0.074	13.1	0.0	0.12	12.4	0.0	1.3	1	0	0	1	1	1	0	Hypothetical	protein	(DUF2513)
B-block_TFIIIC	PF04182.7	gi|257051538|ref|YP_003129371.1|	-	0.091	12.6	0.0	0.15	11.8	0.0	1.3	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
DnaJ	PF00226.26	gi|257051539|ref|YP_003129372.1|	-	2e-12	46.6	0.1	3.2e-12	45.9	0.0	1.3	1	0	0	1	1	1	1	DnaJ	domain
Fer2	PF00111.22	gi|257051539|ref|YP_003129372.1|	-	2e-10	40.2	0.2	3.8e-10	39.3	0.2	1.4	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
RPT	PF13446.1	gi|257051539|ref|YP_003129372.1|	-	0.0063	15.8	0.0	0.028	13.8	0.0	1.9	1	1	1	2	2	2	1	A	repeated	domain	in	UCH-protein
DUF2088	PF09861.4	gi|257051540|ref|YP_003129373.1|	-	9.1e-41	139.1	0.0	1.5e-40	138.4	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF2088)
DUF362	PF04015.7	gi|257051540|ref|YP_003129373.1|	-	0.0038	16.7	0.0	0.0073	15.7	0.0	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF362)
AP_endonuc_2	PF01261.19	gi|257051541|ref|YP_003129374.1|	-	9e-11	41.4	2.4	5.3e-07	29.1	0.1	2.1	1	1	1	2	2	2	2	Xylose	isomerase-like	TIM	barrel
AAA_11	PF13086.1	gi|257051542|ref|YP_003129375.1|	-	6.3e-39	133.9	0.2	4e-20	72.4	0.1	2.9	2	1	1	3	3	3	2	AAA	domain
AAA_12	PF13087.1	gi|257051542|ref|YP_003129375.1|	-	2.1e-38	131.7	0.0	3.2e-38	131.1	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
Dna2	PF08696.6	gi|257051542|ref|YP_003129375.1|	-	2.7e-34	118.3	0.0	1.2e-33	116.2	0.0	2.0	1	1	0	1	1	1	1	DNA	replication	factor	Dna2
AAA_30	PF13604.1	gi|257051542|ref|YP_003129375.1|	-	1.7e-18	66.9	1.2	1.4e-17	63.9	0.7	2.7	2	0	0	2	2	2	1	AAA	domain
PDDEXK_1	PF12705.2	gi|257051542|ref|YP_003129375.1|	-	1.5e-14	54.0	0.1	9.7e-14	51.3	0.0	2.1	2	0	0	2	2	2	1	PD-(D/E)XK	nuclease	superfamily
AAA_19	PF13245.1	gi|257051542|ref|YP_003129375.1|	-	1.7e-14	53.3	2.1	2.1e-12	46.6	0.6	2.9	2	0	0	2	2	2	1	Part	of	AAA	domain
Viral_helicase1	PF01443.13	gi|257051542|ref|YP_003129375.1|	-	1.6e-07	31.0	0.0	0.0073	15.8	0.0	3.2	3	0	0	3	3	3	1	Viral	(Superfamily	1)	RNA	helicase
AAA_16	PF13191.1	gi|257051542|ref|YP_003129375.1|	-	2e-06	27.8	1.0	7.1e-06	26.1	0.7	2.0	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|257051542|ref|YP_003129375.1|	-	3.3e-05	24.0	0.1	0.0017	18.5	0.0	3.3	3	1	0	3	3	2	1	AAA	domain
ResIII	PF04851.10	gi|257051542|ref|YP_003129375.1|	-	9e-05	22.3	0.0	0.00017	21.4	0.0	1.4	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
UvrD-helicase	PF00580.16	gi|257051542|ref|YP_003129375.1|	-	0.00022	20.6	0.0	0.00058	19.2	0.0	1.5	1	1	0	1	1	1	1	UvrD/REP	helicase	N-terminal	domain
UvrD_C_2	PF13538.1	gi|257051542|ref|YP_003129375.1|	-	0.00041	20.4	0.0	0.0014	18.7	0.0	1.9	1	0	0	1	1	1	1	UvrD-like	helicase	C-terminal	domain
CbiA	PF01656.18	gi|257051542|ref|YP_003129375.1|	-	0.00064	19.1	0.2	0.0016	17.8	0.1	1.7	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
DUF2075	PF09848.4	gi|257051542|ref|YP_003129375.1|	-	0.00096	18.2	0.0	0.002	17.2	0.0	1.5	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2075)
T2SE	PF00437.15	gi|257051542|ref|YP_003129375.1|	-	0.0012	17.7	0.0	0.0022	16.9	0.0	1.4	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
Helicase_RecD	PF05127.9	gi|257051542|ref|YP_003129375.1|	-	0.0014	18.3	0.0	0.0049	16.5	0.0	2.0	1	1	0	1	1	1	1	Helicase
AAA_25	PF13481.1	gi|257051542|ref|YP_003129375.1|	-	0.0024	17.3	0.2	0.0024	17.3	0.1	2.5	3	1	0	3	3	3	1	AAA	domain
PIF1	PF05970.9	gi|257051542|ref|YP_003129375.1|	-	0.0047	15.9	0.0	0.089	11.7	0.0	2.1	2	0	0	2	2	2	1	PIF1-like	helicase
IstB_IS21	PF01695.12	gi|257051542|ref|YP_003129375.1|	-	0.0051	16.2	0.0	0.02	14.3	0.0	1.9	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
AAA_10	PF12846.2	gi|257051542|ref|YP_003129375.1|	-	0.0091	15.4	0.0	0.7	9.2	0.0	2.5	1	1	0	2	2	2	1	AAA-like	domain
SRP54	PF00448.17	gi|257051542|ref|YP_003129375.1|	-	0.012	15.0	0.1	0.11	11.9	0.0	2.3	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
TrwB_AAD_bind	PF10412.4	gi|257051542|ref|YP_003129375.1|	-	0.014	14.0	0.0	0.025	13.2	0.0	1.3	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA	PF00004.24	gi|257051542|ref|YP_003129375.1|	-	0.014	15.5	0.0	0.042	14.0	0.0	1.8	2	0	0	2	2	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
FtsK_SpoIIIE	PF01580.13	gi|257051542|ref|YP_003129375.1|	-	0.029	13.8	0.0	0.073	12.5	0.0	1.6	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
PhoH	PF02562.11	gi|257051542|ref|YP_003129375.1|	-	0.032	13.4	0.0	0.092	11.9	0.0	1.8	2	0	0	2	2	2	0	PhoH-like	protein
AAA_24	PF13479.1	gi|257051542|ref|YP_003129375.1|	-	0.033	13.7	0.0	0.097	12.2	0.0	1.8	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.7	gi|257051542|ref|YP_003129375.1|	-	0.12	12.0	0.0	0.49	10.0	0.0	1.9	2	0	0	2	2	2	0	NACHT	domain
AAA_17	PF13207.1	gi|257051542|ref|YP_003129375.1|	-	0.12	13.1	1.7	0.39	11.5	0.2	2.6	2	1	0	2	2	2	0	AAA	domain
Trypan_PARP	PF05887.6	gi|257051544|ref|YP_003129377.1|	-	0.033	14.0	7.3	0.055	13.2	0.9	2.2	2	0	0	2	2	2	0	Procyclic	acidic	repetitive	protein	(PARP)
Cadherin	PF00028.12	gi|257051544|ref|YP_003129377.1|	-	0.062	13.5	0.1	0.26	11.5	0.0	2.0	2	0	0	2	2	2	0	Cadherin	domain
Big_3_4	PF13754.1	gi|257051544|ref|YP_003129377.1|	-	0.068	13.5	7.9	1.6	9.0	0.0	3.0	3	0	0	3	3	3	0	Bacterial	Ig-like	domain	(group	3)
Lamp	PF01299.12	gi|257051544|ref|YP_003129377.1|	-	4.6	6.2	7.0	9.5	5.2	4.9	1.4	1	0	0	1	1	1	0	Lysosome-associated	membrane	glycoprotein	(Lamp)
MutS_V	PF00488.16	gi|257051545|ref|YP_003129378.1|	-	1.8e-90	302.4	0.0	2.8e-90	301.8	0.0	1.3	1	0	0	1	1	1	1	MutS	domain	V
MutS_III	PF05192.13	gi|257051545|ref|YP_003129378.1|	-	7.9e-44	149.8	2.8	1.7e-43	148.8	2.0	1.6	1	0	0	1	1	1	1	MutS	domain	III
MutS_I	PF01624.15	gi|257051545|ref|YP_003129378.1|	-	9.7e-36	122.2	0.0	4.5e-35	120.0	0.0	2.0	2	0	0	2	2	2	1	MutS	domain	I
MutS_IV	PF05190.13	gi|257051545|ref|YP_003129378.1|	-	2.6e-31	107.6	0.4	5.4e-31	106.6	0.3	1.6	1	0	0	1	1	1	1	MutS	family	domain	IV
MutS_II	PF05188.12	gi|257051545|ref|YP_003129378.1|	-	1.7e-16	60.5	0.0	1e-15	58.0	0.0	2.3	2	0	0	2	2	2	1	MutS	domain	II
AAA_29	PF13555.1	gi|257051545|ref|YP_003129378.1|	-	0.17	11.4	0.0	0.38	10.2	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
NPV_P10	PF05531.7	gi|257051545|ref|YP_003129378.1|	-	1.2	9.4	4.1	29	4.9	0.4	3.2	2	1	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
Thioredoxin	PF00085.15	gi|257051546|ref|YP_003129379.1|	-	3e-12	46.1	0.0	3.4e-12	45.9	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.1	gi|257051546|ref|YP_003129379.1|	-	0.00014	22.0	0.0	0.034	14.3	0.0	2.1	1	1	1	2	2	2	2	Thioredoxin-like	domain
TrbC_Ftype	PF09673.5	gi|257051546|ref|YP_003129379.1|	-	0.0075	15.8	0.0	0.0079	15.7	0.0	1.2	1	0	0	1	1	1	1	Type-F	conjugative	transfer	system	pilin	assembly	protein
DUF836	PF05768.9	gi|257051546|ref|YP_003129379.1|	-	0.012	15.8	0.0	0.016	15.4	0.0	1.2	1	0	0	1	1	1	0	Glutaredoxin-like	domain	(DUF836)
HyaE	PF07449.6	gi|257051546|ref|YP_003129379.1|	-	0.014	15.2	0.1	0.08	12.8	0.1	2.0	1	1	0	1	1	1	0	Hydrogenase-1	expression	protein	HyaE
TraF	PF13728.1	gi|257051546|ref|YP_003129379.1|	-	0.025	14.0	0.0	0.14	11.5	0.0	1.9	1	1	0	1	1	1	0	F	plasmid	transfer	operon	protein
Thioredoxin_3	PF13192.1	gi|257051546|ref|YP_003129379.1|	-	0.043	13.6	0.0	0.058	13.2	0.0	1.3	1	0	0	1	1	1	0	Thioredoxin	domain
UPF0058	PF01893.11	gi|257051547|ref|YP_003129380.1|	-	2.4e-16	59.5	0.0	2.6e-16	59.4	0.0	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0058
NAD_binding_10	PF13460.1	gi|257051549|ref|YP_003129382.1|	-	3.1e-24	86.0	0.6	4e-24	85.6	0.4	1.2	1	0	0	1	1	1	1	NADH(P)-binding
NmrA	PF05368.8	gi|257051549|ref|YP_003129382.1|	-	1.2e-11	44.3	0.0	1.5e-11	43.9	0.0	1.2	1	0	0	1	1	1	1	NmrA-like	family
Epimerase	PF01370.16	gi|257051549|ref|YP_003129382.1|	-	4.9e-11	42.5	0.0	3.8e-09	36.3	0.0	2.6	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
RmlD_sub_bind	PF04321.12	gi|257051549|ref|YP_003129382.1|	-	5.2e-07	28.8	0.0	4.9e-05	22.3	0.0	2.3	2	0	0	2	2	2	2	RmlD	substrate	binding	domain
adh_short	PF00106.20	gi|257051549|ref|YP_003129382.1|	-	0.0015	18.4	0.7	0.17	11.8	0.0	2.5	2	0	0	2	2	2	1	short	chain	dehydrogenase
3Beta_HSD	PF01073.14	gi|257051549|ref|YP_003129382.1|	-	0.0026	16.5	0.0	0.0063	15.2	0.0	1.7	1	1	1	2	2	2	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
TrkA_N	PF02254.13	gi|257051549|ref|YP_003129382.1|	-	0.0035	17.3	0.0	0.19	11.7	0.0	2.5	2	0	0	2	2	2	1	TrkA-N	domain
Semialdhyde_dh	PF01118.19	gi|257051549|ref|YP_003129382.1|	-	0.0053	17.0	0.2	0.18	12.0	0.0	3.0	2	1	1	3	3	3	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
NAD_binding_4	PF07993.7	gi|257051549|ref|YP_003129382.1|	-	0.013	14.4	0.0	0.037	12.9	0.0	1.8	2	0	0	2	2	2	0	Male	sterility	protein
DapB_N	PF01113.15	gi|257051549|ref|YP_003129382.1|	-	0.017	15.0	0.1	0.065	13.1	0.0	2.0	2	0	0	2	2	2	0	Dihydrodipicolinate	reductase,	N-terminus
KR	PF08659.5	gi|257051549|ref|YP_003129382.1|	-	0.085	12.5	0.1	1.7	8.2	0.0	2.2	2	0	0	2	2	2	0	KR	domain
Ldh_1_N	PF00056.18	gi|257051550|ref|YP_003129383.1|	-	2.9e-45	153.5	0.1	4.5e-45	152.9	0.1	1.3	1	0	0	1	1	1	1	lactate/malate	dehydrogenase,	NAD	binding	domain
Ldh_1_C	PF02866.13	gi|257051550|ref|YP_003129383.1|	-	3.7e-40	137.4	0.0	5.2e-40	137.0	0.0	1.2	1	0	0	1	1	1	1	lactate/malate	dehydrogenase,	alpha/beta	C-terminal	domain
Shikimate_DH	PF01488.15	gi|257051550|ref|YP_003129383.1|	-	4.8e-06	26.7	0.2	1e-05	25.6	0.1	1.6	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
F420_oxidored	PF03807.12	gi|257051550|ref|YP_003129383.1|	-	4.5e-05	23.7	0.6	9.1e-05	22.8	0.2	1.7	1	1	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
UDPG_MGDP_dh_N	PF03721.9	gi|257051550|ref|YP_003129383.1|	-	0.00015	21.1	0.3	0.0035	16.7	0.1	2.3	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
ThiF	PF00899.16	gi|257051550|ref|YP_003129383.1|	-	0.00022	21.0	0.4	0.00051	19.8	0.2	1.6	1	0	0	1	1	1	1	ThiF	family
Semialdhyde_dh	PF01118.19	gi|257051550|ref|YP_003129383.1|	-	0.00027	21.2	0.0	0.0048	17.1	0.1	2.2	2	0	0	2	2	2	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
OCD_Mu_crystall	PF02423.10	gi|257051550|ref|YP_003129383.1|	-	0.00052	18.8	0.2	0.00081	18.2	0.2	1.2	1	0	0	1	1	1	1	Ornithine	cyclodeaminase/mu-crystallin	family
GFO_IDH_MocA	PF01408.17	gi|257051550|ref|YP_003129383.1|	-	0.0041	17.6	0.2	0.0074	16.7	0.1	1.4	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Ecl1	PF12855.2	gi|257051550|ref|YP_003129383.1|	-	0.0063	15.7	0.6	0.011	14.9	0.4	1.4	1	0	0	1	1	1	1	Life-span	regulatory	factor
Saccharop_dh	PF03435.13	gi|257051550|ref|YP_003129383.1|	-	0.0078	15.2	0.2	0.011	14.7	0.1	1.2	1	0	0	1	1	1	1	Saccharopine	dehydrogenase
TrkA_N	PF02254.13	gi|257051550|ref|YP_003129383.1|	-	0.0078	16.2	0.5	0.021	14.8	0.4	1.7	1	1	0	1	1	1	1	TrkA-N	domain
3HCDH_N	PF02737.13	gi|257051550|ref|YP_003129383.1|	-	0.014	15.0	1.2	0.036	13.7	0.8	1.7	1	1	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Glyco_hydro_4	PF02056.11	gi|257051550|ref|YP_003129383.1|	-	0.015	14.5	0.8	2.7	7.2	0.2	2.5	1	1	0	2	2	2	0	Family	4	glycosyl	hydrolase
DAO	PF01266.19	gi|257051550|ref|YP_003129383.1|	-	0.024	13.5	1.2	0.024	13.5	0.9	1.7	1	1	1	2	2	2	0	FAD	dependent	oxidoreductase
NAD_binding_7	PF13241.1	gi|257051550|ref|YP_003129383.1|	-	0.025	14.8	0.7	0.085	13.1	0.1	2.1	2	1	1	3	3	2	0	Putative	NAD(P)-binding
Thi4	PF01946.12	gi|257051550|ref|YP_003129383.1|	-	0.043	12.9	0.3	0.81	8.7	0.1	2.3	2	0	0	2	2	2	0	Thi4	family
ApbA	PF02558.11	gi|257051550|ref|YP_003129383.1|	-	0.048	13.0	0.0	0.16	11.4	0.0	1.8	2	0	0	2	2	2	0	Ketopantoate	reductase	PanE/ApbA
Pyr_redox_2	PF07992.9	gi|257051550|ref|YP_003129383.1|	-	0.062	13.1	0.0	9	6.1	0.0	2.3	1	1	1	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Radical_SAM	PF04055.16	gi|257051551|ref|YP_003129384.1|	-	3.6e-16	59.7	0.0	1.3e-15	57.9	0.0	1.9	2	0	0	2	2	2	1	Radical	SAM	superfamily
Fer4_12	PF13353.1	gi|257051551|ref|YP_003129384.1|	-	8.1e-05	22.7	0.1	0.00062	19.8	0.0	2.1	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.1	gi|257051551|ref|YP_003129384.1|	-	0.0052	16.7	0.9	0.057	13.4	0.0	2.2	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
zinc_ribbon_5	PF13719.1	gi|257051551|ref|YP_003129384.1|	-	0.05	13.1	2.8	7.2	6.2	0.0	2.6	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|257051551|ref|YP_003129384.1|	-	0.062	13.0	2.9	7.2	6.4	0.0	2.6	2	0	0	2	2	2	0	zinc-ribbon	domain
AIRS_C	PF02769.17	gi|257051552|ref|YP_003129385.1|	-	7.7e-25	87.6	0.1	1.1e-24	87.1	0.1	1.3	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.19	gi|257051552|ref|YP_003129385.1|	-	2.4e-05	24.5	1.1	4.2e-05	23.6	0.1	2.0	2	0	0	2	2	2	1	AIR	synthase	related	protein,	N-terminal	domain
HTH_20	PF12840.2	gi|257051555|ref|YP_003129388.1|	-	6.7e-07	29.0	0.0	8.6e-07	28.6	0.0	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|257051555|ref|YP_003129388.1|	-	2.7e-05	23.7	0.0	4.5e-05	23.0	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_45	PF14947.1	gi|257051555|ref|YP_003129388.1|	-	0.00021	21.0	0.0	0.00028	20.6	0.0	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_Crp_2	PF13545.1	gi|257051555|ref|YP_003129388.1|	-	0.0012	18.5	0.0	0.0015	18.3	0.0	1.2	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
MarR_2	PF12802.2	gi|257051555|ref|YP_003129388.1|	-	0.0014	18.2	0.1	0.0019	17.7	0.1	1.2	1	0	0	1	1	1	1	MarR	family
DUF1495	PF07381.6	gi|257051555|ref|YP_003129388.1|	-	0.0018	17.9	0.0	0.0044	16.6	0.0	1.6	1	1	0	1	1	1	1	Winged	helix	DNA-binding	domain	(DUF1495)
HTH_IclR	PF09339.5	gi|257051555|ref|YP_003129388.1|	-	0.0056	16.2	0.0	0.0093	15.5	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_34	PF13601.1	gi|257051555|ref|YP_003129388.1|	-	0.0059	16.6	0.0	0.0082	16.1	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_24	PF13412.1	gi|257051555|ref|YP_003129388.1|	-	0.0063	15.8	0.0	0.0098	15.2	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.14	gi|257051555|ref|YP_003129388.1|	-	0.0089	15.7	0.0	0.012	15.3	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_1	PF00126.22	gi|257051555|ref|YP_003129388.1|	-	0.024	14.3	0.0	0.034	13.8	0.0	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HxlR	PF01638.12	gi|257051555|ref|YP_003129388.1|	-	0.036	13.7	0.0	0.043	13.4	0.0	1.1	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
PadR	PF03551.9	gi|257051555|ref|YP_003129388.1|	-	0.042	13.6	0.0	0.076	12.7	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
Rrf2	PF02082.15	gi|257051555|ref|YP_003129388.1|	-	0.059	13.4	0.0	0.12	12.5	0.0	1.5	1	1	0	1	1	1	0	Transcriptional	regulator
Replic_Relax	PF13814.1	gi|257051555|ref|YP_003129388.1|	-	0.077	12.8	0.0	0.098	12.4	0.0	1.1	1	0	0	1	1	1	0	Replication-relaxation
HTH_36	PF13730.1	gi|257051555|ref|YP_003129388.1|	-	0.086	12.9	0.0	0.12	12.5	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
Trp_repressor	PF01371.14	gi|257051555|ref|YP_003129388.1|	-	0.11	12.3	0.0	0.15	12.0	0.0	1.2	1	0	0	1	1	1	0	Trp	repressor	protein
HTH_27	PF13463.1	gi|257051555|ref|YP_003129388.1|	-	0.13	12.6	0.0	0.17	12.1	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
MarR	PF01047.17	gi|257051555|ref|YP_003129388.1|	-	0.13	11.9	0.0	0.2	11.4	0.0	1.3	1	0	0	1	1	1	0	MarR	family
PolyA_pol_RNAbd	PF12627.2	gi|257051555|ref|YP_003129388.1|	-	0.13	11.8	0.0	5.4	6.6	0.0	2.2	2	0	0	2	2	2	0	Probable	RNA	and	SrmB-	binding	site	of	polymerase	A
TMEM220	PF15071.1	gi|257051556|ref|YP_003129389.1|	-	0.016	15.6	0.4	0.027	14.9	0.3	1.3	1	0	0	1	1	1	0	Transmembrane	family	220,	helix
HTH_20	PF12840.2	gi|257051556|ref|YP_003129389.1|	-	0.023	14.5	0.0	0.041	13.6	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
FixQ	PF05545.6	gi|257051556|ref|YP_003129389.1|	-	0.092	12.4	0.3	0.19	11.3	0.2	1.5	1	0	0	1	1	1	0	Cbb3-type	cytochrome	oxidase	component	FixQ
DUF4605	PF15378.1	gi|257051557|ref|YP_003129390.1|	-	0.11	12.2	0.6	0.17	11.5	0.5	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4605)
SIS	PF01380.17	gi|257051558|ref|YP_003129391.1|	-	1.2e-54	183.4	0.3	3.1e-28	98.0	0.1	2.3	2	0	0	2	2	2	2	SIS	domain
GATase_6	PF13522.1	gi|257051558|ref|YP_003129391.1|	-	9.7e-26	90.3	0.1	2.5e-25	88.9	0.0	1.7	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_2	PF00310.16	gi|257051558|ref|YP_003129391.1|	-	3.3e-22	78.7	0.0	3.3e-17	62.2	0.0	2.6	1	1	1	2	2	2	2	Glutamine	amidotransferases	class-II
GATase_7	PF13537.1	gi|257051558|ref|YP_003129391.1|	-	2.2e-20	72.6	0.0	4.8e-20	71.5	0.0	1.6	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
SIS_2	PF13580.1	gi|257051558|ref|YP_003129391.1|	-	0.0022	17.7	0.0	0.055	13.1	0.0	2.4	2	0	0	2	2	2	1	SIS	domain
GATase_4	PF13230.1	gi|257051558|ref|YP_003129391.1|	-	0.0063	15.2	0.2	0.012	14.3	0.1	1.4	1	1	0	1	1	1	1	Glutamine	amidotransferases	class-II
CoA_binding_2	PF13380.1	gi|257051558|ref|YP_003129391.1|	-	0.14	12.3	2.0	2.4	8.3	0.1	3.0	3	0	0	3	3	3	0	CoA	binding	domain
DUF1616	PF07760.6	gi|257051559|ref|YP_003129392.1|	-	6.8e-34	117.2	0.0	8.2e-34	117.0	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1616)
DUF2207	PF09972.4	gi|257051559|ref|YP_003129392.1|	-	2.1	6.8	3.4	0.96	7.9	0.1	1.9	1	1	1	2	2	2	0	Predicted	membrane	protein	(DUF2207)
DUF4131	PF13567.1	gi|257051559|ref|YP_003129392.1|	-	8.5	5.7	11.9	1	8.7	1.2	2.5	1	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4131)
PMT_2	PF13231.1	gi|257051560|ref|YP_003129393.1|	-	0.00014	21.8	20.1	0.00014	21.8	13.9	3.5	3	0	0	3	3	3	2	Dolichyl-phosphate-mannose-protein	mannosyltransferase
Glyco_trans_4_4	PF13579.1	gi|257051561|ref|YP_003129394.1|	-	3e-10	40.4	0.8	3e-10	40.4	0.6	2.1	1	1	1	2	2	2	1	Glycosyl	transferase	4-like	domain
Glycos_transf_1	PF00534.15	gi|257051561|ref|YP_003129394.1|	-	3.1e-10	39.7	0.0	4.6e-10	39.1	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|257051561|ref|YP_003129394.1|	-	2.6e-08	34.0	0.0	5.3e-08	33.0	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_2	PF13477.1	gi|257051561|ref|YP_003129394.1|	-	0.0019	18.0	0.0	0.0033	17.2	0.0	1.5	1	1	0	1	1	1	1	Glycosyl	transferase	4-like
Glyco_transf_4	PF13439.1	gi|257051561|ref|YP_003129394.1|	-	0.003	17.3	0.0	0.013	15.2	0.0	1.9	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_1_2	PF13524.1	gi|257051561|ref|YP_003129394.1|	-	0.045	14.0	0.0	0.085	13.1	0.0	1.4	1	0	0	1	1	1	0	Glycosyl	transferases	group	1
DRTGG	PF07085.7	gi|257051561|ref|YP_003129394.1|	-	0.098	12.2	0.0	0.2	11.2	0.0	1.5	1	0	0	1	1	1	0	DRTGG	domain
Sulfatase	PF00884.18	gi|257051562|ref|YP_003129395.1|	-	1.6e-34	119.5	0.3	2.2e-34	119.0	0.2	1.1	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.17	gi|257051562|ref|YP_003129395.1|	-	1.9e-07	30.7	0.3	0.0064	15.8	0.0	2.4	2	0	0	2	2	2	2	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DegQ	PF08181.6	gi|257051562|ref|YP_003129395.1|	-	0.013	15.1	0.4	0.052	13.2	0.0	2.0	2	0	0	2	2	2	0	DegQ	(SacQ)	family
Hexapep	PF00132.19	gi|257051563|ref|YP_003129396.1|	-	8.9e-30	100.8	10.4	9.9e-11	40.6	0.5	4.6	3	1	1	5	5	5	4	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.1	gi|257051563|ref|YP_003129396.1|	-	3e-21	74.6	7.6	2.3e-09	36.6	0.5	4.4	4	0	0	4	4	4	4	Hexapeptide	repeat	of	succinyl-transferase
DegT_DnrJ_EryC1	PF01041.12	gi|257051564|ref|YP_003129397.1|	-	9.6e-123	409.8	0.8	1.1e-122	409.6	0.5	1.0	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Beta_elim_lyase	PF01212.16	gi|257051564|ref|YP_003129397.1|	-	9.3e-09	34.8	0.9	1.9e-08	33.8	0.6	1.5	1	1	0	1	1	1	1	Beta-eliminating	lyase
Aminotran_1_2	PF00155.16	gi|257051564|ref|YP_003129397.1|	-	0.00027	20.0	0.0	0.00047	19.2	0.0	1.5	1	1	0	1	1	1	1	Aminotransferase	class	I	and	II
Cys_Met_Meta_PP	PF01053.15	gi|257051564|ref|YP_003129397.1|	-	0.08	11.2	0.0	0.15	10.3	0.0	1.5	1	0	0	1	1	1	0	Cys/Met	metabolism	PLP-dependent	enzyme
DUF457	PF04307.9	gi|257051565|ref|YP_003129398.1|	-	1.3e-08	34.3	3.2	1.8e-08	33.8	2.2	1.2	1	0	0	1	1	1	1	Predicted	membrane-bound	metal-dependent	hydrolase	(DUF457)
Polysacc_deac_1	PF01522.16	gi|257051566|ref|YP_003129399.1|	-	0.0024	17.4	0.0	0.0058	16.2	0.0	1.7	2	1	0	2	2	2	1	Polysaccharide	deacetylase
Glycos_transf_2	PF00535.21	gi|257051567|ref|YP_003129400.1|	-	1.2e-17	64.0	0.1	2e-17	63.4	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|257051567|ref|YP_003129400.1|	-	4.8e-05	23.2	0.1	8.1e-05	22.5	0.1	1.3	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.1	gi|257051567|ref|YP_003129400.1|	-	0.091	13.0	0.0	0.18	12.1	0.0	1.5	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
Lig_chan-Glu_bd	PF10613.4	gi|257051567|ref|YP_003129400.1|	-	0.13	12.2	0.1	0.39	10.7	0.0	1.8	2	0	0	2	2	2	0	Ligated	ion	channel	L-glutamate-	and	glycine-binding	site
ATPgrasp_Ter	PF15632.1	gi|257051568|ref|YP_003129401.1|	-	6e-89	298.0	0.0	7.4e-89	297.7	0.0	1.0	1	0	0	1	1	1	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
ATP-grasp_4	PF13535.1	gi|257051568|ref|YP_003129401.1|	-	9e-27	93.9	0.0	1.3e-26	93.4	0.0	1.2	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_3	PF02655.9	gi|257051568|ref|YP_003129401.1|	-	2.8e-11	43.5	0.0	4.6e-11	42.8	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
CPSase_L_D2	PF02786.12	gi|257051568|ref|YP_003129401.1|	-	3e-06	26.6	0.0	0.011	14.9	0.0	2.1	2	0	0	2	2	2	2	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
HAD_2	PF13419.1	gi|257051569|ref|YP_003129402.1|	-	1e-25	90.9	0.0	1.2e-25	90.7	0.0	1.0	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.21	gi|257051569|ref|YP_003129402.1|	-	8.8e-07	29.5	0.0	6.1e-06	26.7	0.0	1.9	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|257051569|ref|YP_003129402.1|	-	0.00013	21.5	0.0	0.00039	20.0	0.0	1.8	1	0	0	1	1	1	1	HAD-hyrolase-like
HAD	PF12710.2	gi|257051569|ref|YP_003129402.1|	-	0.015	15.5	0.1	0.02	15.0	0.0	1.2	1	0	0	1	1	1	0	haloacid	dehalogenase-like	hydrolase
Polysacc_synt_C	PF14667.1	gi|257051570|ref|YP_003129403.1|	-	8.2e-17	61.3	14.1	8.2e-17	61.3	9.8	4.0	3	1	1	4	4	4	1	Polysaccharide	biosynthesis	C-terminal	domain
Polysacc_synt	PF01943.12	gi|257051570|ref|YP_003129403.1|	-	3.8e-11	42.7	22.1	3.8e-11	42.7	15.3	2.4	2	1	0	2	2	2	1	Polysaccharide	biosynthesis	protein
Polysacc_synt_3	PF13440.1	gi|257051570|ref|YP_003129403.1|	-	3.7e-06	26.5	26.0	3.7e-06	26.5	18.0	3.1	1	1	1	2	2	2	1	Polysaccharide	biosynthesis	protein
MVIN	PF03023.9	gi|257051570|ref|YP_003129403.1|	-	2.2	6.6	32.5	0.024	13.0	16.4	2.2	3	0	0	3	3	3	0	MviN-like	protein
Glycos_transf_2	PF00535.21	gi|257051571|ref|YP_003129404.1|	-	8.7e-23	80.8	0.1	1.5e-22	80.1	0.1	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|257051571|ref|YP_003129404.1|	-	2e-17	63.7	1.1	7.5e-11	42.2	0.3	2.2	1	1	1	2	2	2	2	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.1	gi|257051571|ref|YP_003129404.1|	-	4.1e-11	42.9	4.0	1.3e-09	38.0	0.6	2.1	1	1	1	2	2	2	2	Glycosyl	transferase	family	group	2
Glyco_tranf_2_2	PF10111.4	gi|257051571|ref|YP_003129404.1|	-	1.9e-05	23.9	0.0	0.0019	17.3	0.0	2.0	1	1	1	2	2	2	2	Glycosyltransferase	like	family	2
Glyco_transf_21	PF13506.1	gi|257051571|ref|YP_003129404.1|	-	0.0005	19.3	0.0	0.0018	17.6	0.0	1.8	1	1	1	2	2	2	1	Glycosyl	transferase	family	21
Glyco_tranf_2_4	PF13704.1	gi|257051571|ref|YP_003129404.1|	-	0.11	12.8	0.0	0.3	11.4	0.0	1.9	2	1	0	2	2	2	0	Glycosyl	transferase	family	2
Beta_helix	PF13229.1	gi|257051572|ref|YP_003129405.1|	-	4.7e-05	23.1	5.9	0.00019	21.2	3.8	2.3	2	1	0	2	2	2	1	Right	handed	beta	helix	region
DegT_DnrJ_EryC1	PF01041.12	gi|257051573|ref|YP_003129406.1|	-	4e-39	134.6	0.0	3.7e-26	92.0	0.0	2.1	2	0	0	2	2	2	2	DegT/DnrJ/EryC1/StrS	aminotransferase	family
GFO_IDH_MocA	PF01408.17	gi|257051574|ref|YP_003129407.1|	-	4.5e-22	78.8	0.1	1.2e-21	77.4	0.0	1.7	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
F420_oxidored	PF03807.12	gi|257051574|ref|YP_003129407.1|	-	7.9e-07	29.4	0.0	2.7e-06	27.7	0.0	2.0	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
2-Hacid_dh_C	PF02826.14	gi|257051574|ref|YP_003129407.1|	-	5.8e-05	22.3	0.0	0.00012	21.2	0.0	1.5	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.7	gi|257051574|ref|YP_003129407.1|	-	6.1e-05	22.4	0.1	0.00015	21.1	0.0	1.6	2	0	0	2	2	2	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
Saccharop_dh	PF03435.13	gi|257051574|ref|YP_003129407.1|	-	0.00022	20.3	0.7	0.00045	19.3	0.1	1.7	2	0	0	2	2	2	1	Saccharopine	dehydrogenase
Semialdhyde_dh	PF01118.19	gi|257051574|ref|YP_003129407.1|	-	0.0011	19.3	0.3	0.012	15.9	0.0	2.3	2	0	0	2	2	2	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
GFO_IDH_MocA_C	PF02894.12	gi|257051574|ref|YP_003129407.1|	-	0.0037	17.0	0.0	0.0083	15.9	0.0	1.6	1	0	0	1	1	1	1	Oxidoreductase	family,	C-terminal	alpha/beta	domain
NAD_binding_2	PF03446.10	gi|257051574|ref|YP_003129407.1|	-	0.0057	16.5	0.0	0.018	14.8	0.0	1.8	2	0	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
DapB_N	PF01113.15	gi|257051574|ref|YP_003129407.1|	-	0.058	13.3	0.2	0.16	11.9	0.0	1.9	2	0	0	2	2	2	0	Dihydrodipicolinate	reductase,	N-terminus
Sda	PF08970.5	gi|257051574|ref|YP_003129407.1|	-	0.092	12.2	0.0	0.21	11.1	0.0	1.5	1	0	0	1	1	1	0	Sporulation	inhibitor	A
ComGG	PF14173.1	gi|257051574|ref|YP_003129407.1|	-	0.14	12.3	0.0	0.27	11.4	0.0	1.4	1	0	0	1	1	1	0	ComG	operon	protein	7
UDPG_MGDP_dh_N	PF03721.9	gi|257051575|ref|YP_003129408.1|	-	8.2e-36	123.1	0.1	1.4e-35	122.3	0.0	1.3	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
UDPG_MGDP_dh	PF00984.14	gi|257051575|ref|YP_003129408.1|	-	8.6e-18	64.3	0.0	1.6e-17	63.4	0.0	1.4	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	central	domain
UDPG_MGDP_dh_C	PF03720.10	gi|257051575|ref|YP_003129408.1|	-	2.1e-16	59.9	0.0	4.7e-16	58.8	0.0	1.6	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
NAD_binding_2	PF03446.10	gi|257051575|ref|YP_003129408.1|	-	8.1e-05	22.5	0.2	0.00064	19.6	0.1	2.5	2	1	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
TrkA_N	PF02254.13	gi|257051575|ref|YP_003129408.1|	-	0.00038	20.4	0.8	0.79	9.7	0.0	3.3	3	0	0	3	3	3	2	TrkA-N	domain
NAD_Gly3P_dh_N	PF01210.18	gi|257051575|ref|YP_003129408.1|	-	0.00087	19.0	0.0	0.0027	17.4	0.0	1.8	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
DUF354	PF04007.7	gi|257051576|ref|YP_003129409.1|	-	6.3e-18	64.7	0.0	8.4e-18	64.3	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF354)
Epimerase_2	PF02350.14	gi|257051576|ref|YP_003129409.1|	-	0.015	14.1	0.0	0.026	13.2	0.0	1.5	1	1	0	1	1	1	0	UDP-N-acetylglucosamine	2-epimerase
HTH_IclR	PF09339.5	gi|257051576|ref|YP_003129409.1|	-	0.046	13.3	0.0	0.11	12.1	0.0	1.6	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
Glyco_trans_1_3	PF13528.1	gi|257051576|ref|YP_003129409.1|	-	0.046	12.8	0.0	1.1	8.3	0.0	2.2	2	0	0	2	2	2	0	Glycosyl	transferase	family	1
BNIP3	PF06553.7	gi|257051577|ref|YP_003129410.1|	-	0.033	13.5	0.2	0.033	13.5	0.1	1.2	1	0	0	1	1	1	0	BNIP3
DUF179	PF02622.10	gi|257051577|ref|YP_003129410.1|	-	0.063	12.9	0.0	0.063	12.9	0.0	1.1	1	0	0	1	1	1	0	Uncharacterized	ACR,	COG1678
Phos_pyr_kin	PF08543.7	gi|257051578|ref|YP_003129411.1|	-	4.3e-81	271.7	3.7	5.6e-81	271.3	2.6	1.1	1	0	0	1	1	1	1	Phosphomethylpyrimidine	kinase
Aldolase_2	PF10120.4	gi|257051578|ref|YP_003129411.1|	-	6.3e-30	103.7	0.0	1.4e-29	102.6	0.0	1.6	2	0	0	2	2	2	1	Putative	aldolase
PfkB	PF00294.19	gi|257051578|ref|YP_003129411.1|	-	2.4e-10	40.0	3.4	3.5e-10	39.4	2.3	1.2	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
CARDB	PF07705.6	gi|257051579|ref|YP_003129412.1|	-	3.4e-16	59.1	11.2	8e-05	22.6	0.0	4.9	3	1	2	5	5	5	4	CARDB
Peptidase_MA_2	PF13485.1	gi|257051579|ref|YP_003129412.1|	-	0.0045	17.0	0.8	0.0094	15.9	0.6	1.4	1	0	0	1	1	1	1	Peptidase	MA	superfamily
Fn3-like	PF14310.1	gi|257051579|ref|YP_003129412.1|	-	0.02	14.8	2.5	7.6	6.5	0.1	4.8	4	1	1	5	5	5	0	Fibronectin	type	III-like	domain
PKD	PF00801.15	gi|257051579|ref|YP_003129412.1|	-	0.077	12.7	21.1	0.29	10.9	0.0	7.0	7	1	0	8	8	8	0	PKD	domain
Cadherin-like	PF12733.2	gi|257051579|ref|YP_003129412.1|	-	0.24	11.7	21.1	0.29	11.4	1.5	5.3	2	2	4	6	6	6	0	Cadherin-like	beta	sandwich	domain
MutS_V	PF00488.16	gi|257051580|ref|YP_003129413.1|	-	2.2e-94	315.2	0.0	3.4e-94	314.6	0.0	1.3	1	0	0	1	1	1	1	MutS	domain	V
MutS_III	PF05192.13	gi|257051580|ref|YP_003129413.1|	-	5.9e-39	133.9	2.4	1.1e-38	133.1	1.4	1.6	2	0	0	2	2	2	1	MutS	domain	III
MutS_I	PF01624.15	gi|257051580|ref|YP_003129413.1|	-	2.9e-25	88.4	0.0	5.9e-25	87.5	0.0	1.6	1	0	0	1	1	1	1	MutS	domain	I
MutS_IV	PF05190.13	gi|257051580|ref|YP_003129413.1|	-	7.1e-24	83.8	1.2	1.4e-23	82.8	0.8	1.5	1	0	0	1	1	1	1	MutS	family	domain	IV
MutS_II	PF05188.12	gi|257051580|ref|YP_003129413.1|	-	1.1e-23	83.8	0.0	3e-23	82.4	0.0	1.7	1	0	0	1	1	1	1	MutS	domain	II
AAA_29	PF13555.1	gi|257051580|ref|YP_003129413.1|	-	0.013	14.9	0.0	0.034	13.6	0.0	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
TelA	PF05816.6	gi|257051580|ref|YP_003129413.1|	-	0.014	14.1	0.3	1.3	7.6	0.0	2.2	2	0	0	2	2	2	0	Toxic	anion	resistance	protein	(TelA)
AAA_14	PF13173.1	gi|257051580|ref|YP_003129413.1|	-	0.12	12.2	0.0	0.35	10.7	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
DUF1798	PF08807.5	gi|257051580|ref|YP_003129413.1|	-	0.16	11.6	0.2	0.34	10.6	0.1	1.5	1	0	0	1	1	1	0	Bacterial	domain	of	unknown	function	(DUF1798)
DUF2391	PF09622.5	gi|257051581|ref|YP_003129414.1|	-	0.00024	20.3	2.8	0.00033	19.9	1.9	1.2	1	0	0	1	1	1	1	Putative	integral	membrane	protein	(DUF2391)
MDMPI_C	PF07398.6	gi|257051581|ref|YP_003129414.1|	-	0.058	13.9	0.2	0.14	12.7	0.1	1.7	1	0	0	1	1	1	0	MDMPI	C-terminal	domain
Rhomboid	PF01694.17	gi|257051581|ref|YP_003129414.1|	-	0.18	11.7	4.0	0.24	11.4	2.8	1.1	1	0	0	1	1	1	0	Rhomboid	family
DUF4117	PF13491.1	gi|257051581|ref|YP_003129414.1|	-	1.2	8.6	9.6	0.89	8.9	4.9	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4117)
EPSP_synthase	PF00275.15	gi|257051582|ref|YP_003129415.1|	-	1.4e-103	346.5	0.3	1.7e-103	346.2	0.2	1.0	1	0	0	1	1	1	1	EPSP	synthase	(3-phosphoshikimate	1-carboxyvinyltransferase)
Cu_amine_oxidN1	PF07833.6	gi|257051582|ref|YP_003129415.1|	-	0.074	13.3	0.0	0.25	11.6	0.0	2.0	1	1	0	1	1	1	0	Copper	amine	oxidase	N-terminal	domain
TSNR_N	PF04705.7	gi|257051582|ref|YP_003129415.1|	-	0.11	12.3	0.0	0.25	11.1	0.0	1.5	1	0	0	1	1	1	0	Thiostrepton-resistance	methylase,	N	terminus
PAS_4	PF08448.5	gi|257051583|ref|YP_003129416.1|	-	1.1e-26	93.0	5.9	1.4e-08	34.7	0.0	4.2	4	0	0	4	4	4	3	PAS	fold
HATPase_c	PF02518.21	gi|257051583|ref|YP_003129416.1|	-	4.6e-22	77.8	0.1	1e-21	76.7	0.1	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Response_reg	PF00072.19	gi|257051583|ref|YP_003129416.1|	-	9.8e-20	70.6	0.0	2.6e-19	69.2	0.0	1.7	1	0	0	1	1	1	1	Response	regulator	receiver	domain
PAS_9	PF13426.1	gi|257051583|ref|YP_003129416.1|	-	1.1e-17	64.3	0.4	1.3e-06	28.7	0.0	4.9	6	0	0	6	6	6	3	PAS	domain
GAF_2	PF13185.1	gi|257051583|ref|YP_003129416.1|	-	1.2e-15	58.2	0.4	7.3e-15	55.7	0.1	2.5	2	0	0	2	2	2	1	GAF	domain
PAS_8	PF13188.1	gi|257051583|ref|YP_003129416.1|	-	3.9e-11	42.3	0.2	0.00014	21.6	0.0	3.2	2	0	0	2	2	2	2	PAS	domain
PAS_3	PF08447.6	gi|257051583|ref|YP_003129416.1|	-	9.6e-11	41.6	0.2	1.6e-07	31.2	0.0	3.6	3	0	0	3	3	3	1	PAS	fold
PAS	PF00989.19	gi|257051583|ref|YP_003129416.1|	-	2.6e-10	40.0	0.1	0.022	14.5	0.0	3.8	3	0	0	3	3	3	3	PAS	fold
HisKA	PF00512.20	gi|257051583|ref|YP_003129416.1|	-	5.9e-09	35.7	0.2	5.9e-09	35.7	0.1	2.9	3	0	0	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_7	PF12860.2	gi|257051583|ref|YP_003129416.1|	-	2.5e-08	33.9	0.1	0.013	15.5	0.0	3.5	3	0	0	3	3	3	2	PAS	fold
GAF_3	PF13492.1	gi|257051583|ref|YP_003129416.1|	-	1.5e-06	28.2	0.0	6.3e-06	26.3	0.0	2.1	2	0	0	2	2	2	1	GAF	domain
GAF	PF01590.21	gi|257051583|ref|YP_003129416.1|	-	1.8e-06	28.1	0.0	8.7e-06	25.9	0.0	2.3	1	0	0	1	1	1	1	GAF	domain
HATPase_c_3	PF13589.1	gi|257051583|ref|YP_003129416.1|	-	0.0045	16.6	0.0	0.012	15.3	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
OKR_DC_1_N	PF03709.10	gi|257051583|ref|YP_003129416.1|	-	0.0076	16.3	0.0	0.028	14.4	0.0	2.0	2	0	0	2	2	1	1	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
HATPase_c_5	PF14501.1	gi|257051583|ref|YP_003129416.1|	-	0.011	15.4	0.0	0.78	9.4	0.0	2.5	2	1	0	2	2	2	0	GHKL	domain
ABC2_membrane	PF01061.19	gi|257051584|ref|YP_003129417.1|	-	1.4e-32	112.6	18.4	1.4e-32	112.6	12.8	1.4	2	0	0	2	2	2	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.2	gi|257051584|ref|YP_003129417.1|	-	4.6e-18	65.3	17.0	4.6e-18	65.3	11.8	1.7	1	1	1	2	2	2	1	ABC-2	family	transporter	protein
ABC_tran	PF00005.22	gi|257051585|ref|YP_003129418.1|	-	6e-31	107.5	0.0	8.9e-31	107.0	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|257051585|ref|YP_003129418.1|	-	3.2e-16	60.1	0.0	1.2e-10	41.8	0.0	2.1	1	1	0	2	2	2	2	AAA	domain
DUF4162	PF13732.1	gi|257051585|ref|YP_003129418.1|	-	9.2e-05	22.8	0.0	0.00019	21.8	0.0	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4162)
AAA_16	PF13191.1	gi|257051585|ref|YP_003129418.1|	-	0.00027	20.9	0.0	0.00064	19.7	0.0	1.6	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_29	PF13555.1	gi|257051585|ref|YP_003129418.1|	-	0.00035	20.0	0.1	0.00073	19.0	0.1	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_25	PF13481.1	gi|257051585|ref|YP_003129418.1|	-	0.00037	19.9	0.3	0.026	13.9	0.0	2.6	1	1	0	2	2	2	1	AAA	domain
SMC_N	PF02463.14	gi|257051585|ref|YP_003129418.1|	-	0.0016	17.7	0.0	0.056	12.6	0.0	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_17	PF13207.1	gi|257051585|ref|YP_003129418.1|	-	0.0025	18.6	0.5	0.14	12.9	0.0	2.3	1	1	1	2	2	2	1	AAA	domain
AAA	PF00004.24	gi|257051585|ref|YP_003129418.1|	-	0.0025	17.9	0.0	0.0067	16.6	0.0	1.9	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_23	PF13476.1	gi|257051585|ref|YP_003129418.1|	-	0.0081	16.5	0.0	0.015	15.6	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
SRP54	PF00448.17	gi|257051585|ref|YP_003129418.1|	-	0.012	15.0	0.0	0.019	14.4	0.0	1.3	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_30	PF13604.1	gi|257051585|ref|YP_003129418.1|	-	0.021	14.4	0.0	0.033	13.7	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
SbcCD_C	PF13558.1	gi|257051585|ref|YP_003129418.1|	-	0.021	14.7	0.0	0.063	13.2	0.0	1.9	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_19	PF13245.1	gi|257051585|ref|YP_003129418.1|	-	0.031	14.0	0.0	0.066	12.9	0.0	1.5	1	0	0	1	1	1	0	Part	of	AAA	domain
AAA_33	PF13671.1	gi|257051585|ref|YP_003129418.1|	-	0.034	14.0	0.1	0.14	12.0	0.1	2.0	1	1	0	1	1	1	0	AAA	domain
AAA_15	PF13175.1	gi|257051585|ref|YP_003129418.1|	-	0.045	12.8	0.0	0.56	9.1	0.0	1.9	2	0	0	2	2	2	0	AAA	ATPase	domain
Rad17	PF03215.10	gi|257051585|ref|YP_003129418.1|	-	0.1	11.2	0.0	0.13	10.8	0.0	1.1	1	0	0	1	1	1	0	Rad17	cell	cycle	checkpoint	protein
AAA_22	PF13401.1	gi|257051585|ref|YP_003129418.1|	-	0.12	12.5	0.1	0.39	10.8	0.1	2.0	1	1	0	1	1	1	0	AAA	domain
TetR_C_6	PF13977.1	gi|257051586|ref|YP_003129419.1|	-	1.8e-12	47.3	2.8	3.1e-12	46.5	1.9	1.3	1	0	0	1	1	1	1	Bacterial	transcriptional	repressor
TetR_N	PF00440.18	gi|257051586|ref|YP_003129419.1|	-	1.2e-06	28.0	0.0	2.2e-06	27.1	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
TetR_C_4	PF08359.6	gi|257051586|ref|YP_003129419.1|	-	0.0054	16.6	0.1	0.0077	16.1	0.1	1.2	1	0	0	1	1	1	1	YsiA-like	protein,	C-terminal	region
DUF2828	PF11443.3	gi|257051586|ref|YP_003129419.1|	-	0.058	11.5	0.1	0.068	11.3	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF2828)
TnpV	PF14198.1	gi|257051586|ref|YP_003129419.1|	-	0.073	12.9	0.6	0.14	12.0	0.4	1.6	1	1	0	1	1	1	0	Transposon-encoded	protein	TnpV
DUF3139	PF11337.3	gi|257051586|ref|YP_003129419.1|	-	0.091	13.0	0.0	0.23	11.7	0.0	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3139)
Peptidase_M24	PF00557.19	gi|257051587|ref|YP_003129420.1|	-	3.7e-41	140.9	2.5	1.2e-40	139.2	0.4	2.0	2	0	0	2	2	2	1	Metallopeptidase	family	M24
Creatinase_N	PF01321.13	gi|257051587|ref|YP_003129420.1|	-	3.1e-06	27.6	0.1	8.3e-06	26.3	0.1	1.7	1	0	0	1	1	1	1	Creatinase/Prolidase	N-terminal	domain
PfkB	PF00294.19	gi|257051588|ref|YP_003129421.1|	-	4.6e-59	200.0	0.2	5.3e-59	199.8	0.1	1.0	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Phos_pyr_kin	PF08543.7	gi|257051588|ref|YP_003129421.1|	-	0.00043	19.5	0.0	0.0006	19.0	0.0	1.2	1	0	0	1	1	1	1	Phosphomethylpyrimidine	kinase
GlcNAc_2-epim	PF07221.6	gi|257051589|ref|YP_003129422.1|	-	1.9e-92	309.9	8.5	2.4e-92	309.6	5.9	1.2	1	0	0	1	1	1	1	N-acylglucosamine	2-epimerase	(GlcNAc	2-epimerase)
Glyco_hydro_76	PF03663.9	gi|257051589|ref|YP_003129422.1|	-	8.6e-07	28.6	2.3	0.0018	17.6	0.2	3.1	3	0	0	3	3	3	2	Glycosyl	hydrolase	family	76
DUF1680	PF07944.7	gi|257051589|ref|YP_003129422.1|	-	0.00082	17.7	0.0	0.0044	15.3	0.0	1.9	1	1	0	1	1	1	1	Putative	glycosyl	hydrolase	of	unknown	function	(DUF1680)
ImpA-rel_N	PF06812.7	gi|257051589|ref|YP_003129422.1|	-	0.0037	17.0	0.5	0.036	13.8	0.2	2.5	2	0	0	2	2	2	1	ImpA-related	N-terminal
T2SE	PF00437.15	gi|257051590|ref|YP_003129423.1|	-	5.1e-14	51.8	0.0	9.2e-14	50.9	0.0	1.4	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_17	PF13207.1	gi|257051590|ref|YP_003129423.1|	-	3.7e-05	24.5	2.5	7.9e-05	23.4	0.1	2.9	2	2	0	2	2	2	1	AAA	domain
KH_1	PF00013.24	gi|257051590|ref|YP_003129423.1|	-	4e-05	23.1	0.4	0.00015	21.3	0.3	2.0	1	0	0	1	1	1	1	KH	domain
AAA_33	PF13671.1	gi|257051590|ref|YP_003129423.1|	-	0.00096	19.0	0.0	0.0092	15.8	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.1	gi|257051590|ref|YP_003129423.1|	-	0.0013	18.8	0.1	0.0044	17.0	0.0	2.0	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_30	PF13604.1	gi|257051590|ref|YP_003129423.1|	-	0.0016	18.0	0.0	0.0039	16.7	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
Thymidylate_kin	PF02223.12	gi|257051590|ref|YP_003129423.1|	-	0.0016	17.8	0.0	0.0043	16.4	0.0	1.8	1	1	0	1	1	1	1	Thymidylate	kinase
NTPase_1	PF03266.10	gi|257051590|ref|YP_003129423.1|	-	0.0017	18.1	0.0	0.0057	16.3	0.0	2.0	1	0	0	1	1	1	1	NTPase
AAA_19	PF13245.1	gi|257051590|ref|YP_003129423.1|	-	0.0018	18.0	0.0	0.0063	16.2	0.0	1.9	2	0	0	2	2	1	1	Part	of	AAA	domain
KH_2	PF07650.12	gi|257051590|ref|YP_003129423.1|	-	0.0018	17.7	2.1	0.0053	16.2	1.4	1.8	1	0	0	1	1	1	1	KH	domain
AAA_29	PF13555.1	gi|257051590|ref|YP_003129423.1|	-	0.0023	17.4	0.0	0.0061	16.0	0.0	1.7	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_18	PF13238.1	gi|257051590|ref|YP_003129423.1|	-	0.0026	18.0	0.4	0.015	15.6	0.0	2.5	3	0	0	3	3	1	1	AAA	domain
AAA_25	PF13481.1	gi|257051590|ref|YP_003129423.1|	-	0.0032	16.9	1.3	0.02	14.3	0.0	2.4	2	1	0	2	2	2	1	AAA	domain
AAA_5	PF07728.9	gi|257051590|ref|YP_003129423.1|	-	0.0036	17.0	0.0	0.0084	15.8	0.0	1.6	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
IstB_IS21	PF01695.12	gi|257051590|ref|YP_003129423.1|	-	0.0049	16.3	0.0	0.0091	15.4	0.0	1.4	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
Zeta_toxin	PF06414.7	gi|257051590|ref|YP_003129423.1|	-	0.005	15.9	0.0	0.011	14.8	0.0	1.5	1	0	0	1	1	1	1	Zeta	toxin
AAA_14	PF13173.1	gi|257051590|ref|YP_003129423.1|	-	0.0093	15.8	0.0	0.019	14.8	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|257051590|ref|YP_003129423.1|	-	0.0093	16.1	0.0	0.029	14.5	0.0	1.8	1	0	0	1	1	1	1	AAA	domain
KTI12	PF08433.5	gi|257051590|ref|YP_003129423.1|	-	0.0096	15.1	0.0	0.017	14.3	0.0	1.3	1	0	0	1	1	1	1	Chromatin	associated	protein	KTI12
PIN_4	PF13638.1	gi|257051590|ref|YP_003129423.1|	-	0.01	15.9	0.0	0.051	13.6	0.0	2.2	1	1	0	1	1	1	0	PIN	domain
AAA	PF00004.24	gi|257051590|ref|YP_003129423.1|	-	0.021	15.0	0.1	0.051	13.7	0.0	1.7	2	0	0	2	2	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
ATP_bind_1	PF03029.12	gi|257051590|ref|YP_003129423.1|	-	0.025	14.1	0.0	0.04	13.4	0.0	1.3	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
AAA_28	PF13521.1	gi|257051590|ref|YP_003129423.1|	-	0.039	13.9	0.0	0.15	12.0	0.0	2.1	1	1	0	1	1	1	0	AAA	domain
RNA_helicase	PF00910.17	gi|257051590|ref|YP_003129423.1|	-	0.059	13.5	0.0	0.3	11.2	0.0	2.2	3	0	0	3	3	2	0	RNA	helicase
NACHT	PF05729.7	gi|257051590|ref|YP_003129423.1|	-	0.068	12.8	0.0	0.13	11.8	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
FtsK_SpoIIIE	PF01580.13	gi|257051590|ref|YP_003129423.1|	-	0.078	12.4	0.0	0.22	10.9	0.0	1.7	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
APS_kinase	PF01583.15	gi|257051590|ref|YP_003129423.1|	-	0.085	12.5	0.0	0.22	11.1	0.0	1.7	2	0	0	2	2	1	0	Adenylylsulphate	kinase
Viral_helicase1	PF01443.13	gi|257051590|ref|YP_003129423.1|	-	0.09	12.2	0.0	0.14	11.6	0.0	1.3	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
ABC_tran	PF00005.22	gi|257051590|ref|YP_003129423.1|	-	0.13	12.5	0.0	0.29	11.4	0.0	1.6	1	0	0	1	1	1	0	ABC	transporter
Sigma54_activat	PF00158.21	gi|257051590|ref|YP_003129423.1|	-	0.13	11.6	0.0	0.25	10.7	0.0	1.3	1	0	0	1	1	1	0	Sigma-54	interaction	domain
Sigma54_activ_2	PF14532.1	gi|257051590|ref|YP_003129423.1|	-	0.16	11.9	0.0	0.3	11.1	0.0	1.4	1	0	0	1	1	1	0	Sigma-54	interaction	domain
DUF445	PF04286.7	gi|257051591|ref|YP_003129424.1|	-	0.00025	20.6	17.3	0.024	14.2	8.5	2.1	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF445)
YpjP	PF14005.1	gi|257051591|ref|YP_003129424.1|	-	0.0013	18.4	15.5	0.18	11.5	2.7	3.1	1	1	2	3	3	3	3	YpjP-like	protein
COMPASS-Shg1	PF05205.7	gi|257051591|ref|YP_003129424.1|	-	0.0022	18.2	12.3	83	3.5	8.5	3.7	1	1	0	1	1	1	0	COMPASS	(Complex	proteins	associated	with	Set1p)	component	shg1
Nexin_C	PF08628.7	gi|257051591|ref|YP_003129424.1|	-	0.024	14.6	2.7	33	4.6	1.9	3.9	1	1	0	1	1	1	0	Sorting	nexin	C	terminal
Tcp11	PF05794.8	gi|257051591|ref|YP_003129424.1|	-	0.13	10.9	7.1	0.21	10.2	4.9	1.3	1	0	0	1	1	1	0	T-complex	protein	11
SecA_SW	PF07516.8	gi|257051591|ref|YP_003129424.1|	-	0.4	10.3	14.3	0.7	9.6	5.7	2.2	1	1	1	2	2	2	0	SecA	Wing	and	Scaffold	domain
SAC3	PF12209.3	gi|257051591|ref|YP_003129424.1|	-	0.41	10.8	16.6	1.8	8.7	0.4	4.5	1	1	1	2	2	2	0	Leucine	permease	transcriptional	regulator	helical	domain
NTS_2	PF15448.1	gi|257051591|ref|YP_003129424.1|	-	0.94	9.8	4.3	1.3	9.3	0.4	3.0	1	1	1	3	3	3	0	N-terminal	segments	of	P.	falciparum	erythrocyte	membrane	protein
Sec3_C_2	PF15278.1	gi|257051591|ref|YP_003129424.1|	-	1.1	9.4	21.8	2	8.6	1.8	4.6	1	1	3	4	4	4	0	Sec3	exocyst	complex	subunit
Phage_connect_1	PF05135.8	gi|257051591|ref|YP_003129424.1|	-	2	8.6	6.3	2e+02	2.2	4.3	2.8	1	1	0	1	1	1	0	Phage	gp6-like	head-tail	connector	protein
DUF302	PF03625.9	gi|257051592|ref|YP_003129425.1|	-	5.8e-21	73.8	0.0	8.9e-21	73.2	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF302
GARS_A	PF01071.14	gi|257051593|ref|YP_003129426.1|	-	1.2e-51	175.1	0.0	1.8e-51	174.4	0.0	1.3	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
GARS_N	PF02844.10	gi|257051593|ref|YP_003129426.1|	-	7.1e-25	87.3	0.0	1.6e-24	86.2	0.0	1.6	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	N	domain
ATP-grasp_4	PF13535.1	gi|257051593|ref|YP_003129426.1|	-	9.9e-21	74.2	0.1	2.3e-20	73.0	0.0	1.5	2	0	0	2	2	2	1	ATP-grasp	domain
GARS_C	PF02843.11	gi|257051593|ref|YP_003129426.1|	-	1e-19	70.4	0.4	6.8e-19	67.8	0.1	2.3	2	0	0	2	2	2	1	Phosphoribosylglycinamide	synthetase,	C	domain
ATPgrasp_Ter	PF15632.1	gi|257051593|ref|YP_003129426.1|	-	2.7e-07	29.6	0.0	9e-07	27.9	0.0	1.8	2	1	0	2	2	2	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
ATP-grasp_3	PF02655.9	gi|257051593|ref|YP_003129426.1|	-	7.1e-07	29.2	0.0	1.5e-06	28.1	0.0	1.5	1	1	0	1	1	1	1	ATP-grasp	domain
CPSase_L_D2	PF02786.12	gi|257051593|ref|YP_003129426.1|	-	0.025	13.8	0.0	0.05	12.8	0.0	1.5	1	0	0	1	1	1	0	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
CP_ATPgrasp_2	PF14403.1	gi|257051593|ref|YP_003129426.1|	-	0.063	11.9	0.0	0.1	11.2	0.0	1.3	1	0	0	1	1	1	0	Circularly	permuted	ATP-grasp	type	2
ATPgrasp_ST	PF14397.1	gi|257051593|ref|YP_003129426.1|	-	0.092	11.8	0.0	0.18	10.8	0.0	1.4	1	0	0	1	1	1	0	Sugar-transfer	associated	ATP-grasp
Thioredox_DsbH	PF03190.10	gi|257051594|ref|YP_003129427.1|	-	5.6e-73	244.0	0.0	8.1e-73	243.5	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF255
Thioredoxin_7	PF13899.1	gi|257051594|ref|YP_003129427.1|	-	2.7e-11	43.3	0.0	7.1e-11	41.9	0.0	1.8	2	0	0	2	2	2	1	Thioredoxin-like
GlcNAc_2-epim	PF07221.6	gi|257051594|ref|YP_003129427.1|	-	5.4e-05	22.3	0.0	0.073	12.0	0.0	2.3	2	0	0	2	2	2	2	N-acylglucosamine	2-epimerase	(GlcNAc	2-epimerase)
Thioredoxin_2	PF13098.1	gi|257051594|ref|YP_003129427.1|	-	0.0077	16.4	0.0	0.016	15.3	0.0	1.5	1	0	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin	PF00085.15	gi|257051595|ref|YP_003129428.1|	-	4.4e-10	39.1	0.0	5.6e-10	38.8	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_9	PF14595.1	gi|257051595|ref|YP_003129428.1|	-	0.00055	19.5	0.0	0.00077	19.0	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_8	PF13905.1	gi|257051595|ref|YP_003129428.1|	-	0.006	16.6	0.0	1.4	9.1	0.0	2.3	1	1	1	2	2	2	2	Thioredoxin-like
Thioredoxin_7	PF13899.1	gi|257051595|ref|YP_003129428.1|	-	0.009	16.0	0.0	0.014	15.3	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin-like
AhpC-TSA	PF00578.16	gi|257051595|ref|YP_003129428.1|	-	0.012	15.2	0.1	0.06	13.0	0.0	1.9	1	1	1	2	2	2	0	AhpC/TSA	family
Thioredoxin_2	PF13098.1	gi|257051595|ref|YP_003129428.1|	-	0.04	14.1	0.0	0.43	10.7	0.0	2.0	1	1	0	1	1	1	0	Thioredoxin-like	domain
PALP	PF00291.20	gi|257051596|ref|YP_003129429.1|	-	3e-57	194.1	0.2	3.8e-57	193.8	0.1	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
DFP	PF04127.10	gi|257051596|ref|YP_003129429.1|	-	0.087	12.4	0.2	1.4	8.4	0.0	2.5	2	0	0	2	2	2	0	DNA	/	pantothenate	metabolism	flavoprotein
Response_reg	PF00072.19	gi|257051597|ref|YP_003129430.1|	-	1.1e-21	76.8	0.0	2.6e-21	75.7	0.0	1.6	1	0	0	1	1	1	1	Response	regulator	receiver	domain
PAS_9	PF13426.1	gi|257051597|ref|YP_003129430.1|	-	4e-12	46.4	0.1	1.5e-09	38.1	0.0	3.7	4	0	0	4	4	4	1	PAS	domain
GAF_2	PF13185.1	gi|257051597|ref|YP_003129430.1|	-	9.3e-08	32.6	0.1	2.7e-07	31.1	0.0	1.9	2	1	0	2	2	2	1	GAF	domain
PAS_8	PF13188.1	gi|257051597|ref|YP_003129430.1|	-	9.6e-07	28.4	0.2	3.2e-05	23.6	0.0	3.0	3	0	0	3	3	3	1	PAS	domain
GAF	PF01590.21	gi|257051597|ref|YP_003129430.1|	-	1.9e-06	28.0	0.4	1.1e-05	25.6	0.0	2.3	3	0	0	3	3	3	1	GAF	domain
GAF_3	PF13492.1	gi|257051597|ref|YP_003129430.1|	-	7.7e-06	26.0	0.0	4.4e-05	23.5	0.0	2.2	2	0	0	2	2	2	1	GAF	domain
PAS_4	PF08448.5	gi|257051597|ref|YP_003129430.1|	-	0.00041	20.3	0.1	0.0059	16.6	0.0	2.5	2	0	0	2	2	2	1	PAS	fold
GPW_gp25	PF04965.9	gi|257051597|ref|YP_003129430.1|	-	0.035	13.6	0.1	2.7	7.5	0.1	2.6	1	1	0	1	1	1	0	Gene	25-like	lysozyme
ThiI	PF02568.9	gi|257051599|ref|YP_003129432.1|	-	1e-42	145.8	0.0	1.4e-42	145.3	0.0	1.1	1	0	0	1	1	1	1	Thiamine	biosynthesis	protein	(ThiI)
THUMP	PF02926.12	gi|257051599|ref|YP_003129432.1|	-	4.1e-13	49.4	0.0	5.6e-13	48.9	0.0	1.2	1	0	0	1	1	1	1	THUMP	domain
QueC	PF06508.8	gi|257051599|ref|YP_003129432.1|	-	7.4e-05	22.1	0.0	0.3	10.3	0.0	2.2	2	0	0	2	2	2	2	Queuosine	biosynthesis	protein	QueC
ATP_bind_3	PF01171.15	gi|257051599|ref|YP_003129432.1|	-	0.018	14.5	0.0	0.033	13.7	0.0	1.4	1	1	0	1	1	1	0	PP-loop	family
tRNA_Me_trans	PF03054.11	gi|257051599|ref|YP_003129432.1|	-	0.021	13.3	0.0	0.031	12.8	0.0	1.2	1	0	0	1	1	1	0	tRNA	methyl	transferase
Asn_synthase	PF00733.16	gi|257051599|ref|YP_003129432.1|	-	0.041	13.3	0.0	0.068	12.6	0.0	1.3	1	0	0	1	1	1	0	Asparagine	synthase
AdoMet_Synthase	PF01941.14	gi|257051600|ref|YP_003129433.1|	-	3.2e-177	588.9	6.5	3.6e-177	588.7	4.5	1.0	1	0	0	1	1	1	1	S-adenosylmethionine	synthetase	(AdoMet	synthetase)
Asp23	PF03780.8	gi|257051600|ref|YP_003129433.1|	-	2.4	8.4	6.5	3.1	8.1	0.9	3.2	2	2	0	2	2	2	0	Asp23	family
CYTH	PF01928.16	gi|257051601|ref|YP_003129434.1|	-	6.3e-45	153.1	3.1	7e-45	152.9	2.1	1.0	1	0	0	1	1	1	1	CYTH	domain
FKBP_C	PF00254.23	gi|257051602|ref|YP_003129435.1|	-	3.6e-07	30.1	1.3	7.6e-07	29.0	0.1	2.1	2	1	0	2	2	2	1	FKBP-type	peptidyl-prolyl	cis-trans	isomerase
Imm1	PF14430.1	gi|257051602|ref|YP_003129435.1|	-	0.074	13.2	5.5	3.4	7.8	1.3	2.5	2	0	0	2	2	2	0	Immunity	protein	Imm1
ScdA_N	PF04405.9	gi|257051602|ref|YP_003129435.1|	-	0.1	11.9	0.3	0.25	10.7	0.2	1.6	1	0	0	1	1	1	0	Domain	of	Unknown	function	(DUF542)
NUDIX	PF00293.23	gi|257051603|ref|YP_003129436.1|	-	3.9e-12	45.9	1.4	5.9e-12	45.3	1.0	1.2	1	0	0	1	1	1	1	NUDIX	domain
CobT	PF06213.7	gi|257051604|ref|YP_003129437.1|	-	9.1	5.3	11.1	15	4.6	7.7	1.2	1	0	0	1	1	1	0	Cobalamin	biosynthesis	protein	CobT
KaiC	PF06745.8	gi|257051606|ref|YP_003129439.1|	-	4.9e-08	32.3	0.0	0.00081	18.5	0.0	2.1	1	1	1	2	2	2	2	KaiC
Trigger_N	PF05697.8	gi|257051606|ref|YP_003129439.1|	-	0.12	12.1	0.0	0.19	11.5	0.0	1.3	1	0	0	1	1	1	0	Bacterial	trigger	factor	protein	(TF)
OTCace_N	PF02729.16	gi|257051607|ref|YP_003129440.1|	-	5.8e-41	139.4	0.0	1.1e-40	138.5	0.0	1.4	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	carbamoyl-P	binding	domain
OTCace	PF00185.19	gi|257051607|ref|YP_003129440.1|	-	1.1e-35	122.8	0.0	1.8e-35	122.1	0.0	1.4	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	Asp/Orn	binding	domain
PyrI	PF01948.13	gi|257051608|ref|YP_003129441.1|	-	1.7e-36	124.0	0.7	2.2e-36	123.7	0.5	1.1	1	0	0	1	1	1	1	Aspartate	carbamoyltransferase	regulatory	chain,	allosteric	domain
PyrI_C	PF02748.10	gi|257051608|ref|YP_003129441.1|	-	3.7e-16	58.2	1.5	6.3e-16	57.5	1.0	1.4	1	0	0	1	1	1	1	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
DUF4181	PF13789.1	gi|257051609|ref|YP_003129442.1|	-	0.058	13.3	0.1	0.058	13.3	0.0	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4181)
ODV-E18	PF10717.4	gi|257051609|ref|YP_003129442.1|	-	0.15	11.5	0.0	0.17	11.3	0.0	1.1	1	0	0	1	1	1	0	Occlusion-derived	virus	envelope	protein	ODV-E18
NUDIX	PF00293.23	gi|257051610|ref|YP_003129443.1|	-	1.7e-13	50.3	0.1	2.6e-13	49.7	0.1	1.3	1	0	0	1	1	1	1	NUDIX	domain
RNA_binding	PF01877.12	gi|257051612|ref|YP_003129445.1|	-	1.5e-28	99.2	0.0	2.3e-28	98.6	0.0	1.2	1	0	0	1	1	1	1	RNA	binding
RNase_P_p30	PF01876.11	gi|257051613|ref|YP_003129446.1|	-	9.2e-30	102.8	0.0	1.2e-29	102.4	0.0	1.1	1	0	0	1	1	1	1	RNase	P	subunit	p30
PHP	PF02811.14	gi|257051613|ref|YP_003129446.1|	-	0.0032	17.2	0.0	0.0041	16.9	0.0	1.2	1	1	0	1	1	1	1	PHP	domain
GAF_3	PF13492.1	gi|257051614|ref|YP_003129447.1|	-	6.1e-05	23.1	0.3	0.00011	22.2	0.2	1.5	1	0	0	1	1	1	1	GAF	domain
GAF_2	PF13185.1	gi|257051614|ref|YP_003129447.1|	-	0.0013	19.2	2.9	0.0024	18.3	0.3	2.4	2	1	0	2	2	2	1	GAF	domain
GAF	PF01590.21	gi|257051614|ref|YP_003129447.1|	-	0.0076	16.3	0.5	0.024	14.7	0.1	2.1	2	1	0	2	2	2	1	GAF	domain
Acyl_transf_3	PF01757.17	gi|257051614|ref|YP_003129447.1|	-	0.035	12.9	0.1	0.047	12.5	0.1	1.1	1	0	0	1	1	1	0	Acyltransferase	family
DUF2269	PF10027.4	gi|257051614|ref|YP_003129447.1|	-	0.93	9.2	4.8	0.97	9.1	2.3	1.8	2	0	0	2	2	2	0	Predicted	integral	membrane	protein	(DUF2269)
DUF1364	PF07102.7	gi|257051615|ref|YP_003129448.1|	-	0.081	12.8	0.1	0.081	12.8	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1364)
Methyltransf_26	PF13659.1	gi|257051616|ref|YP_003129449.1|	-	2.4e-16	59.8	1.3	2.8e-16	59.5	0.3	1.6	2	1	0	2	2	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|257051616|ref|YP_003129449.1|	-	1.2e-13	50.8	0.0	1.8e-13	50.2	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
UPF0020	PF01170.13	gi|257051616|ref|YP_003129449.1|	-	3.7e-13	49.4	0.0	5e-13	49.0	0.0	1.1	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
PrmA	PF06325.8	gi|257051616|ref|YP_003129449.1|	-	1.1e-10	41.1	0.0	1.4e-10	40.7	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_18	PF12847.2	gi|257051616|ref|YP_003129449.1|	-	5.8e-10	39.7	0.0	1.8e-09	38.1	0.0	1.9	2	1	0	2	2	2	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|257051616|ref|YP_003129449.1|	-	1e-08	34.9	0.0	1.4e-08	34.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|257051616|ref|YP_003129449.1|	-	5.5e-08	33.1	0.0	1e-07	32.2	0.0	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|257051616|ref|YP_003129449.1|	-	1.8e-07	31.5	0.0	5.5e-07	29.9	0.0	1.8	2	0	0	2	2	1	1	Methyltransferase	domain
Cons_hypoth95	PF03602.10	gi|257051616|ref|YP_003129449.1|	-	5.6e-06	25.8	0.0	8e-06	25.3	0.0	1.1	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
Methyltransf_32	PF13679.1	gi|257051616|ref|YP_003129449.1|	-	1e-05	25.2	0.0	1.3e-05	24.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|257051616|ref|YP_003129449.1|	-	3.4e-05	23.6	0.0	4.4e-05	23.2	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|257051616|ref|YP_003129449.1|	-	6.8e-05	23.2	0.0	0.00012	22.4	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|257051616|ref|YP_003129449.1|	-	0.0001	21.5	0.0	0.00025	20.2	0.0	1.6	2	0	0	2	2	2	1	ubiE/COQ5	methyltransferase	family
N6_Mtase	PF02384.11	gi|257051616|ref|YP_003129449.1|	-	0.0013	17.9	0.0	0.002	17.2	0.0	1.3	1	0	0	1	1	1	1	N-6	DNA	Methylase
Methyltransf_9	PF08003.6	gi|257051616|ref|YP_003129449.1|	-	0.0022	16.7	0.0	0.0031	16.2	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
FtsJ	PF01728.14	gi|257051616|ref|YP_003129449.1|	-	0.004	17.1	0.0	0.0046	16.9	0.0	1.2	1	0	0	1	1	1	1	FtsJ-like	methyltransferase
Methyltransf_15	PF09445.5	gi|257051616|ref|YP_003129449.1|	-	0.0086	15.6	0.0	0.012	15.2	0.0	1.3	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
PCMT	PF01135.14	gi|257051616|ref|YP_003129449.1|	-	0.025	14.1	0.0	0.034	13.6	0.0	1.1	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Met_10	PF02475.11	gi|257051616|ref|YP_003129449.1|	-	0.039	13.5	0.0	0.051	13.1	0.0	1.2	1	0	0	1	1	1	0	Met-10+	like-protein
FmrO	PF07091.6	gi|257051616|ref|YP_003129449.1|	-	0.057	12.4	0.0	0.069	12.1	0.0	1.3	1	0	0	1	1	1	0	Ribosomal	RNA	methyltransferase	(FmrO)
Methyltrans_SAM	PF10672.4	gi|257051616|ref|YP_003129449.1|	-	0.073	11.9	0.0	0.11	11.3	0.0	1.2	1	0	0	1	1	1	0	S-adenosylmethionine-dependent	methyltransferase
Methyltransf_3	PF01596.12	gi|257051616|ref|YP_003129449.1|	-	0.081	11.9	0.0	0.14	11.2	0.0	1.4	1	0	0	1	1	1	0	O-methyltransferase
CMAS	PF02353.15	gi|257051616|ref|YP_003129449.1|	-	0.083	11.9	0.0	0.12	11.4	0.0	1.1	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
Methyltransf_4	PF02390.12	gi|257051616|ref|YP_003129449.1|	-	0.1	11.6	0.0	0.16	10.9	0.0	1.3	1	0	0	1	1	1	0	Putative	methyltransferase
Rhomboid	PF01694.17	gi|257051617|ref|YP_003129450.1|	-	1.9e-06	27.9	20.9	1.9e-06	27.9	14.5	2.8	2	1	0	2	2	2	1	Rhomboid	family
Glycos_transf_2	PF00535.21	gi|257051619|ref|YP_003129452.1|	-	1.1e-21	77.3	0.0	1.7e-21	76.6	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|257051619|ref|YP_003129452.1|	-	9.1e-12	45.2	0.0	1.3e-11	44.7	0.0	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.1	gi|257051619|ref|YP_003129452.1|	-	0.004	17.4	0.0	0.0088	16.3	0.0	1.6	1	1	0	1	1	1	1	Glycosyl	transferase	family	2
DUF2910	PF11139.3	gi|257051619|ref|YP_003129452.1|	-	0.0074	15.4	1.2	0.011	14.9	0.8	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2910)
YSIRK_signal	PF04650.12	gi|257051619|ref|YP_003129452.1|	-	0.62	9.6	3.9	1.1	8.9	2.7	1.4	1	0	0	1	1	1	0	YSIRK	type	signal	peptide
Transgly_assoc	PF04226.8	gi|257051619|ref|YP_003129452.1|	-	2	8.5	7.7	7.1	6.7	0.0	2.4	2	0	0	2	2	2	0	Transglycosylase	associated	protein
Sulfatase	PF00884.18	gi|257051620|ref|YP_003129453.1|	-	7.4e-31	107.4	0.0	1.5e-30	106.5	0.0	1.4	1	1	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.17	gi|257051620|ref|YP_003129453.1|	-	3.1e-12	46.5	0.4	3.8e-11	42.9	0.3	2.1	1	1	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF229	PF02995.12	gi|257051620|ref|YP_003129453.1|	-	2.4e-05	22.9	0.0	0.00025	19.6	0.0	2.0	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF229)
DUF1501	PF07394.7	gi|257051620|ref|YP_003129453.1|	-	0.0059	15.4	0.1	0.0097	14.7	0.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1501)
DUF3573	PF12097.3	gi|257051620|ref|YP_003129453.1|	-	0.0085	14.7	0.0	0.012	14.2	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3573)
OrfB_Zn_ribbon	PF07282.6	gi|257051621|ref|YP_003129454.1|	-	1.2e-22	79.2	0.3	2.8e-22	78.1	0.2	1.7	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.14	gi|257051621|ref|YP_003129454.1|	-	9.3e-14	51.3	0.0	1.4e-13	50.7	0.0	1.2	1	0	0	1	1	1	1	Probable	transposase
DCAF15_WD40	PF14939.1	gi|257051621|ref|YP_003129454.1|	-	0.1	11.9	0.2	0.17	11.1	0.2	1.3	1	0	0	1	1	1	0	DDB1-and	CUL4-substrate	receptor	15,	WD	repeat
DZR	PF12773.2	gi|257051621|ref|YP_003129454.1|	-	0.27	11.0	3.6	0.27	11.0	1.1	2.0	2	0	0	2	2	2	0	Double	zinc	ribbon
Phosphodiest	PF01663.17	gi|257051622|ref|YP_003129455.1|	-	6.9e-14	51.9	3.2	1.8e-13	50.5	2.2	1.6	1	1	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Metalloenzyme	PF01676.13	gi|257051622|ref|YP_003129455.1|	-	0.00039	19.8	0.6	0.00056	19.3	0.4	1.2	1	0	0	1	1	1	1	Metalloenzyme	superfamily
Sulfatase	PF00884.18	gi|257051622|ref|YP_003129455.1|	-	0.0052	16.0	0.1	0.38	9.9	0.1	2.1	1	1	0	1	1	1	1	Sulfatase
Sulfatase	PF00884.18	gi|257051623|ref|YP_003129456.1|	-	2.3e-43	148.5	0.1	3e-43	148.1	0.1	1.1	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.17	gi|257051623|ref|YP_003129456.1|	-	1.8e-09	37.4	5.0	1.3e-08	34.6	3.4	2.2	1	1	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF229	PF02995.12	gi|257051623|ref|YP_003129456.1|	-	0.0036	15.7	0.0	0.4	9.0	0.0	2.1	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF229)
Metalloenzyme	PF01676.13	gi|257051623|ref|YP_003129456.1|	-	0.041	13.2	0.1	0.058	12.7	0.1	1.3	1	0	0	1	1	1	0	Metalloenzyme	superfamily
Biotin_lipoyl_2	PF13533.1	gi|257051623|ref|YP_003129456.1|	-	0.11	12.1	0.0	0.23	11.1	0.0	1.5	1	0	0	1	1	1	0	Biotin-lipoyl	like
PglZ	PF08665.7	gi|257051623|ref|YP_003129456.1|	-	0.15	11.6	0.0	0.26	10.9	0.0	1.4	1	0	0	1	1	1	0	PglZ	domain
Alk_phosphatase	PF00245.15	gi|257051623|ref|YP_003129456.1|	-	0.15	10.6	0.0	0.32	9.6	0.0	1.4	1	0	0	1	1	1	0	Alkaline	phosphatase
Polysacc_synt_C	PF14667.1	gi|257051624|ref|YP_003129457.1|	-	5.6e-14	52.1	13.5	5.6e-14	52.1	9.3	4.5	2	1	3	5	5	5	1	Polysaccharide	biosynthesis	C-terminal	domain
Polysacc_synt	PF01943.12	gi|257051624|ref|YP_003129457.1|	-	1.5e-09	37.5	11.9	1.5e-09	37.5	8.2	2.2	2	0	0	2	2	2	1	Polysaccharide	biosynthesis	protein
Polysacc_synt_3	PF13440.1	gi|257051624|ref|YP_003129457.1|	-	5.4e-07	29.3	24.6	5.4e-07	29.3	17.0	3.2	1	1	1	2	2	2	1	Polysaccharide	biosynthesis	protein
MVIN	PF03023.9	gi|257051624|ref|YP_003129457.1|	-	3.3e-06	25.8	8.8	4.6e-05	22.0	6.1	2.5	1	1	0	1	1	1	1	MviN-like	protein
Sulfatase	PF00884.18	gi|257051625|ref|YP_003129458.1|	-	3.3e-38	131.6	0.8	4.1e-38	131.2	0.6	1.1	1	0	0	1	1	1	1	Sulfatase
Metalloenzyme	PF01676.13	gi|257051625|ref|YP_003129458.1|	-	0.15	11.4	0.1	0.25	10.6	0.1	1.4	1	0	0	1	1	1	0	Metalloenzyme	superfamily
Glycos_transf_1	PF00534.15	gi|257051626|ref|YP_003129459.1|	-	9.5e-30	103.2	0.0	1.4e-29	102.6	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|257051626|ref|YP_003129459.1|	-	3.4e-18	66.0	0.1	1e-17	64.5	0.0	1.8	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.1	gi|257051626|ref|YP_003129459.1|	-	6e-08	32.8	0.0	2.5e-07	30.8	0.0	2.0	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.1	gi|257051626|ref|YP_003129459.1|	-	0.0013	18.9	2.3	0.0023	18.1	1.6	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glycos_transf_2	PF00535.21	gi|257051627|ref|YP_003129460.1|	-	3.4e-27	95.1	0.0	5.4e-27	94.5	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|257051627|ref|YP_003129460.1|	-	1.9e-17	63.8	0.2	2.5e-17	63.4	0.1	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.4	gi|257051627|ref|YP_003129460.1|	-	2e-10	40.2	0.1	6.9e-08	31.8	0.0	2.1	2	0	0	2	2	2	2	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.1	gi|257051627|ref|YP_003129460.1|	-	0.002	17.8	0.1	0.0029	17.3	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glyco_transf_21	PF13506.1	gi|257051627|ref|YP_003129460.1|	-	0.011	15.0	0.0	0.027	13.7	0.0	1.6	1	1	0	1	1	1	0	Glycosyl	transferase	family	21
NTP_transf_3	PF12804.2	gi|257051627|ref|YP_003129460.1|	-	0.063	13.3	0.0	0.098	12.7	0.0	1.4	1	0	0	1	1	1	0	MobA-like	NTP	transferase	domain
Glyco_tranf_2_5	PF13712.1	gi|257051627|ref|YP_003129460.1|	-	0.073	12.3	0.0	0.27	10.4	0.0	1.8	2	0	0	2	2	2	0	Glycosyltransferase	like	family
Glyco_transf_7C	PF02709.9	gi|257051627|ref|YP_003129460.1|	-	0.18	11.2	0.7	0.85	9.1	0.1	2.4	2	1	0	2	2	2	0	N-terminal	domain	of	galactosyltransferase
Fer4_7	PF12838.2	gi|257051628|ref|YP_003129461.1|	-	3.4e-12	46.5	21.3	8.9e-07	29.1	5.3	2.2	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|257051628|ref|YP_003129461.1|	-	5.1e-11	41.6	13.8	2.7e-07	29.9	3.5	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.1	gi|257051628|ref|YP_003129461.1|	-	2.2e-10	40.6	5.7	3.1e-10	40.1	4.0	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|257051628|ref|YP_003129461.1|	-	6.9e-08	32.0	14.1	7.7e-06	25.5	3.6	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.1	gi|257051628|ref|YP_003129461.1|	-	2.5e-07	30.3	18.6	7e-05	22.5	5.5	2.2	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.1	gi|257051628|ref|YP_003129461.1|	-	7.9e-07	28.8	7.3	1.6e-06	27.8	5.1	1.5	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|257051628|ref|YP_003129461.1|	-	1.3e-06	28.2	5.4	3.1e-05	23.9	4.5	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|257051628|ref|YP_003129461.1|	-	4.2e-06	27.0	2.3	0.00013	22.3	0.5	2.2	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|257051628|ref|YP_003129461.1|	-	5.3e-06	26.0	10.6	0.0013	18.5	2.5	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_17	PF13534.1	gi|257051628|ref|YP_003129461.1|	-	5.8e-06	26.5	0.8	0.035	14.4	0.3	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|257051628|ref|YP_003129461.1|	-	7.7e-06	26.5	5.9	0.00012	22.7	1.0	2.3	2	0	0	2	2	2	1	4Fe-4S	double	cluster	binding	domain
Fer4_4	PF12800.2	gi|257051628|ref|YP_003129461.1|	-	1.4e-05	25.0	7.2	0.00015	21.8	1.4	2.2	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_3	PF12798.2	gi|257051628|ref|YP_003129461.1|	-	0.0019	18.6	12.7	0.0025	18.2	3.6	2.3	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_13	PF13370.1	gi|257051628|ref|YP_003129461.1|	-	0.012	16.0	13.4	0.12	12.7	9.3	2.4	1	1	0	1	1	1	0	4Fe-4S	single	cluster	domain
Fer4_15	PF13459.1	gi|257051628|ref|YP_003129461.1|	-	0.3	11.6	16.0	9.8	6.8	11.1	2.8	1	1	0	1	1	1	0	4Fe-4S	single	cluster	domain
DUF269	PF03270.8	gi|257051629|ref|YP_003129462.1|	-	0.11	12.5	1.8	2.1	8.3	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function,	DUF269
RibD_C	PF01872.12	gi|257051630|ref|YP_003129463.1|	-	2.7e-53	180.5	0.1	3e-53	180.4	0.1	1.0	1	0	0	1	1	1	1	RibD	C-terminal	domain
tRNA_anti-codon	PF01336.20	gi|257051631|ref|YP_003129464.1|	-	8.4e-08	31.9	2.1	0.08	12.8	0.1	4.2	4	1	0	4	4	4	3	OB-fold	nucleic	acid	binding	domain
Macoilin	PF09726.4	gi|257051632|ref|YP_003129465.1|	-	10	4.2	6.1	12	4.0	4.2	1.2	1	0	0	1	1	1	0	Transmembrane	protein
Metallophos_2	PF12850.2	gi|257051633|ref|YP_003129466.1|	-	1.7e-06	27.9	0.3	3.9e-06	26.7	0.2	1.5	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.23	gi|257051633|ref|YP_003129466.1|	-	5.8e-05	22.5	0.2	0.00011	21.6	0.0	1.5	2	0	0	2	2	2	1	Calcineurin-like	phosphoesterase
Creatininase	PF02633.9	gi|257051635|ref|YP_003129468.1|	-	2.8e-67	226.2	0.5	3.1e-67	226.1	0.4	1.0	1	0	0	1	1	1	1	Creatinine	amidohydrolase
DEAD_assoc	PF08494.6	gi|257051636|ref|YP_003129469.1|	-	1.7e-40	138.7	0.0	3.3e-40	137.8	0.0	1.5	1	0	0	1	1	1	1	DEAD/H	associated
DEAD	PF00270.24	gi|257051636|ref|YP_003129469.1|	-	5.4e-31	107.3	0.0	5.7e-30	104.0	0.0	2.3	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.26	gi|257051636|ref|YP_003129469.1|	-	7.6e-18	64.1	0.1	2.4e-17	62.5	0.0	2.0	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.10	gi|257051636|ref|YP_003129469.1|	-	7.4e-07	29.1	0.0	1.4e-06	28.3	0.0	1.4	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
AAA_19	PF13245.1	gi|257051636|ref|YP_003129469.1|	-	0.01	15.5	0.3	0.19	11.5	0.0	3.4	4	0	0	4	4	4	0	Part	of	AAA	domain
SNF2_N	PF00176.18	gi|257051636|ref|YP_003129469.1|	-	0.056	12.2	0.0	0.086	11.6	0.0	1.2	1	0	0	1	1	1	0	SNF2	family	N-terminal	domain
Zn-ribbon_8	PF09723.5	gi|257051636|ref|YP_003129469.1|	-	0.14	12.1	1.7	0.28	11.1	1.2	1.5	1	0	0	1	1	1	0	Zinc	ribbon	domain
DZR	PF12773.2	gi|257051637|ref|YP_003129470.1|	-	0.015	15.0	1.4	0.024	14.4	0.9	1.2	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-ribbon_3	PF13248.1	gi|257051637|ref|YP_003129470.1|	-	0.025	13.7	2.0	0.038	13.2	1.4	1.3	1	0	0	1	1	1	0	zinc-ribbon	domain
UPF0547	PF10571.4	gi|257051637|ref|YP_003129470.1|	-	3.2	7.5	6.3	9.2	6.0	0.5	2.0	1	1	1	2	2	2	0	Uncharacterised	protein	family	UPF0547
MutS_V	PF00488.16	gi|257051638|ref|YP_003129471.1|	-	5.3e-10	39.0	0.0	9.3e-10	38.3	0.0	1.3	1	0	0	1	1	1	1	MutS	domain	V
AAA_28	PF13521.1	gi|257051638|ref|YP_003129471.1|	-	0.00046	20.1	0.3	0.0022	17.9	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_10	PF12846.2	gi|257051638|ref|YP_003129471.1|	-	0.00081	18.9	0.1	0.038	13.4	0.0	2.9	2	2	1	3	3	3	1	AAA-like	domain
AAA_21	PF13304.1	gi|257051638|ref|YP_003129471.1|	-	0.014	15.3	0.0	0.026	14.4	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_14	PF13173.1	gi|257051638|ref|YP_003129471.1|	-	0.014	15.2	0.0	0.026	14.4	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
IMS_HHH	PF11798.3	gi|257051638|ref|YP_003129471.1|	-	0.025	14.6	0.0	0.063	13.3	0.0	1.8	1	0	0	1	1	1	0	IMS	family	HHH	motif
FeoA	PF04023.9	gi|257051638|ref|YP_003129471.1|	-	0.027	14.4	0.4	0.24	11.3	0.0	2.6	2	0	0	2	2	2	0	FeoA	domain
AAA_22	PF13401.1	gi|257051638|ref|YP_003129471.1|	-	0.037	14.1	0.2	2.8	8.0	0.0	3.1	2	1	0	2	2	2	0	AAA	domain
DUF883	PF05957.8	gi|257051638|ref|YP_003129471.1|	-	4.6	7.6	16.5	0.82	10.1	2.5	3.8	2	1	2	4	4	4	0	Bacterial	protein	of	unknown	function	(DUF883)
AMMECR1	PF01871.12	gi|257051639|ref|YP_003129472.1|	-	2.3e-55	186.3	0.0	2.8e-55	186.0	0.0	1.0	1	0	0	1	1	1	1	AMMECR1
DUF357	PF04010.8	gi|257051640|ref|YP_003129473.1|	-	2.2e-29	100.9	0.1	2.5e-29	100.7	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF357)
TFIIB	PF00382.14	gi|257051641|ref|YP_003129474.1|	-	5.7e-42	141.3	0.2	1.2e-19	69.9	0.1	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.7	gi|257051641|ref|YP_003129474.1|	-	1.4e-17	62.7	5.1	4e-17	61.2	3.7	1.7	2	0	0	2	2	2	1	TFIIB	zinc-binding
HTH_24	PF13412.1	gi|257051641|ref|YP_003129474.1|	-	0.0006	19.1	0.1	0.0014	17.9	0.1	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
RRN7	PF11781.3	gi|257051641|ref|YP_003129474.1|	-	0.0086	15.5	2.6	0.014	14.8	1.8	1.4	1	0	0	1	1	1	1	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
zf-TFIIB	PF13453.1	gi|257051641|ref|YP_003129474.1|	-	0.012	14.7	0.1	0.033	13.3	0.1	1.7	1	0	0	1	1	1	0	Transcription	factor	zinc-finger
HTH_11	PF08279.7	gi|257051641|ref|YP_003129474.1|	-	0.015	14.9	0.1	0.036	13.7	0.1	1.6	1	0	0	1	1	1	0	HTH	domain
Sigma70_r4	PF04545.11	gi|257051641|ref|YP_003129474.1|	-	0.015	14.5	2.7	0.076	12.3	0.1	3.1	3	0	0	3	3	3	0	Sigma-70,	region	4
A2L_zn_ribbon	PF08792.5	gi|257051641|ref|YP_003129474.1|	-	0.018	14.5	1.0	0.035	13.5	0.7	1.5	1	0	0	1	1	1	0	A2L	zinc	ribbon	domain
DZR	PF12773.2	gi|257051641|ref|YP_003129474.1|	-	0.02	14.7	0.7	0.035	13.9	0.5	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
HTH_AsnC-type	PF13404.1	gi|257051641|ref|YP_003129474.1|	-	0.031	13.8	0.1	0.11	12.0	0.0	2.0	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
zf-ribbon_3	PF13248.1	gi|257051641|ref|YP_003129474.1|	-	0.048	12.8	1.4	0.093	11.9	1.0	1.5	1	0	0	1	1	1	0	zinc-ribbon	domain
TrmB	PF01978.14	gi|257051641|ref|YP_003129474.1|	-	0.06	13.0	0.2	0.19	11.4	0.1	1.8	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
zf-RING_3	PF14369.1	gi|257051641|ref|YP_003129474.1|	-	0.25	11.3	2.1	0.24	11.4	0.2	1.8	1	1	1	2	2	2	0	zinc-finger
Zn-ribbon_8	PF09723.5	gi|257051641|ref|YP_003129474.1|	-	3.1	7.8	4.5	6.8	6.7	0.5	2.4	1	1	1	2	2	2	0	Zinc	ribbon	domain
FUN14	PF04930.10	gi|257051642|ref|YP_003129475.1|	-	4.5e-18	65.3	4.8	5.9e-18	64.9	3.3	1.2	1	0	0	1	1	1	1	FUN14	family
Acetyltransf_1	PF00583.19	gi|257051643|ref|YP_003129476.1|	-	5e-15	55.2	0.0	6.6e-15	54.9	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.1	gi|257051643|ref|YP_003129476.1|	-	3.5e-08	33.4	0.0	4.9e-08	33.0	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.1	gi|257051643|ref|YP_003129476.1|	-	1.1e-06	28.7	0.0	1.3e-06	28.5	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
DUF3749	PF12568.3	gi|257051643|ref|YP_003129476.1|	-	2.8e-05	23.7	0.0	3e-05	23.6	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.1	gi|257051643|ref|YP_003129476.1|	-	3.3e-05	23.8	0.0	3.9e-05	23.6	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.1	gi|257051643|ref|YP_003129476.1|	-	0.00082	19.5	0.1	0.0015	18.7	0.1	1.4	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.1	gi|257051643|ref|YP_003129476.1|	-	0.016	15.1	0.0	0.024	14.5	0.0	1.3	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
Acetyltransf_8	PF13523.1	gi|257051643|ref|YP_003129476.1|	-	0.022	14.6	0.1	0.03	14.1	0.0	1.2	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Pribosyltran	PF00156.22	gi|257051644|ref|YP_003129477.1|	-	1.1e-16	60.7	1.3	1.1e-16	60.7	0.9	1.8	2	0	0	2	2	2	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.1	gi|257051644|ref|YP_003129477.1|	-	0.0038	16.4	0.3	0.0042	16.3	0.2	1.3	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
Oxidored_q1	PF00361.15	gi|257051647|ref|YP_003129480.1|	-	1.2e-64	218.2	3.9	1.2e-64	218.2	2.7	2.9	3	0	0	3	3	3	1	NADH-Ubiquinone/plastoquinone	(complex	I),	various	chains
DUF4040	PF13244.1	gi|257051647|ref|YP_003129480.1|	-	3.8e-16	58.8	11.7	3.8e-16	58.8	8.1	5.3	4	0	0	4	4	4	1	Domain	of	unknown	function	(DUF4040)
Oxidored_q1_N	PF00662.15	gi|257051647|ref|YP_003129480.1|	-	1.9e-09	36.9	2.4	5.7e-09	35.4	0.0	2.8	2	0	0	2	2	2	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
YrhC	PF14143.1	gi|257051647|ref|YP_003129480.1|	-	8.2	6.4	10.8	5.4	7.0	0.2	3.5	2	0	0	2	2	2	0	YrhC-like	protein
MnhB	PF04039.8	gi|257051648|ref|YP_003129481.1|	-	2.3e-22	79.3	16.4	3.1e-15	56.3	3.2	2.1	2	0	0	2	2	2	2	Domain	related	to	MnhB	subunit	of	Na+/H+	antiporter
Oxidored_q2	PF00420.19	gi|257051649|ref|YP_003129482.1|	-	4.3e-25	87.1	1.3	5.2e-25	86.8	0.9	1.1	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
DUF2929	PF11151.3	gi|257051649|ref|YP_003129482.1|	-	0.11	12.5	0.8	3.5	7.7	0.1	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2929)
TrbC	PF04956.8	gi|257051649|ref|YP_003129482.1|	-	2.1	8.3	6.2	0.35	10.8	0.7	1.9	2	0	0	2	2	2	0	TrbC/VIRB2	family
Oxidored_q1	PF00361.15	gi|257051650|ref|YP_003129483.1|	-	7.4e-48	163.1	14.9	7.4e-48	163.1	10.3	3.2	1	1	1	2	2	2	1	NADH-Ubiquinone/plastoquinone	(complex	I),	various	chains
Oxidored_q1_N	PF00662.15	gi|257051650|ref|YP_003129483.1|	-	0.002	17.6	0.1	0.0082	15.6	0.1	2.0	1	0	0	1	1	1	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
NADHdeh_related	PF10125.4	gi|257051650|ref|YP_003129483.1|	-	0.0053	15.9	7.7	0.0053	15.9	5.3	2.8	2	1	1	3	3	3	1	NADH	dehydrogenase	I,	subunit	N	related	protein
DUF3087	PF11286.3	gi|257051650|ref|YP_003129483.1|	-	0.68	9.1	2.8	1.7	7.8	1.3	2.1	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3087)
MNHE	PF01899.11	gi|257051651|ref|YP_003129484.1|	-	2.5e-40	137.6	0.7	2.9e-40	137.4	0.5	1.0	1	0	0	1	1	1	1	Na+/H+	ion	antiporter	subunit
DUF4229	PF14012.1	gi|257051651|ref|YP_003129484.1|	-	3.7	7.5	7.5	0.28	11.1	1.8	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4229)
MrpF_PhaF	PF04066.8	gi|257051652|ref|YP_003129485.1|	-	9.2e-17	61.0	7.6	9.2e-17	61.0	5.3	2.1	2	0	0	2	2	2	1	Multiple	resistance	and	pH	regulation	protein	F	(MrpF	/	PhaF)
PhaG_MnhG_YufB	PF03334.9	gi|257051652|ref|YP_003129485.1|	-	0.041	13.9	9.2	0.062	13.3	6.4	1.3	1	0	0	1	1	1	0	Na+/H+	antiporter	subunit
TctB	PF07331.6	gi|257051652|ref|YP_003129485.1|	-	0.16	11.5	7.6	0.22	11.1	5.3	1.1	1	0	0	1	1	1	0	Tripartite	tricarboxylate	transporter	TctB	family
DUF3995	PF13160.1	gi|257051652|ref|YP_003129485.1|	-	0.95	9.5	6.8	1.5	8.8	4.3	1.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3995)
PhaG_MnhG_YufB	PF03334.9	gi|257051653|ref|YP_003129486.1|	-	9.5e-25	86.4	7.9	1.2e-24	86.1	5.5	1.1	1	0	0	1	1	1	1	Na+/H+	antiporter	subunit
DUF456	PF04306.8	gi|257051653|ref|YP_003129486.1|	-	0.19	11.7	8.9	0.23	11.5	6.2	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF456)
DUF3816	PF12822.2	gi|257051653|ref|YP_003129486.1|	-	0.34	10.7	6.2	0.45	10.3	4.3	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3816)
DFP	PF04127.10	gi|257051654|ref|YP_003129487.1|	-	1.1e-47	162.0	3.1	1.7e-46	158.1	0.4	2.2	2	0	0	2	2	2	2	DNA	/	pantothenate	metabolism	flavoprotein
Flavoprotein	PF02441.14	gi|257051654|ref|YP_003129487.1|	-	8.2e-26	90.1	0.1	2.1e-25	88.8	0.1	1.7	1	0	0	1	1	1	1	Flavoprotein
Glyco_trans_4_4	PF13579.1	gi|257051654|ref|YP_003129487.1|	-	0.26	11.4	7.0	0.58	10.2	0.8	3.3	2	2	0	2	2	2	0	Glycosyl	transferase	4-like	domain
PALP	PF00291.20	gi|257051655|ref|YP_003129488.1|	-	2.5e-41	141.8	0.3	3.1e-41	141.5	0.2	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
DUF802	PF05650.6	gi|257051655|ref|YP_003129488.1|	-	0.12	12.4	0.4	2.3	8.4	0.1	2.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF802)
DUF1628	PF07790.6	gi|257051656|ref|YP_003129489.1|	-	6.8e-24	84.4	2.6	1.3e-23	83.5	1.8	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1628)
PKD	PF00801.15	gi|257051656|ref|YP_003129489.1|	-	0.012	15.3	3.3	0.14	11.9	0.1	2.2	1	1	1	2	2	2	0	PKD	domain
MacB_PCD	PF12704.2	gi|257051656|ref|YP_003129489.1|	-	0.024	14.2	1.7	0.03	13.9	1.2	1.2	1	0	0	1	1	1	0	MacB-like	periplasmic	core	domain
DUF3443	PF11925.3	gi|257051656|ref|YP_003129489.1|	-	0.035	12.7	0.5	0.037	12.7	0.3	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3443)
Copper-bind	PF00127.15	gi|257051657|ref|YP_003129490.1|	-	5.2e-13	49.0	0.1	1.9e-12	47.2	0.1	1.8	1	1	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
TAT_signal	PF10518.4	gi|257051657|ref|YP_003129490.1|	-	0.05	13.6	9.0	0.05	13.6	6.2	2.9	3	0	0	3	3	3	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
NAD_kinase	PF01513.16	gi|257051659|ref|YP_003129492.1|	-	2.6e-12	46.0	0.0	3.2e-12	45.8	0.0	1.1	1	0	0	1	1	1	1	ATP-NAD	kinase
Cache_3	PF14827.1	gi|257051659|ref|YP_003129492.1|	-	0.056	13.3	0.1	0.14	12.0	0.1	1.7	1	0	0	1	1	1	0	Sensory	domain	of	two-component	sensor	kinase
DUF3302	PF11742.3	gi|257051660|ref|YP_003129493.1|	-	0.037	13.8	0.4	0.083	12.7	0.1	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3302)
DUF3325	PF11804.3	gi|257051660|ref|YP_003129493.1|	-	0.5	10.3	4.8	0.45	10.4	2.2	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3325)
TctB	PF07331.6	gi|257051661|ref|YP_003129494.1|	-	0.026	14.1	13.0	0.1	12.2	0.2	2.2	2	0	0	2	2	2	0	Tripartite	tricarboxylate	transporter	TctB	family
DUF4131	PF13567.1	gi|257051661|ref|YP_003129494.1|	-	0.071	12.5	0.2	0.071	12.5	0.1	2.7	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4131)
SIT	PF15330.1	gi|257051661|ref|YP_003129494.1|	-	0.24	11.5	0.0	0.24	11.5	0.0	1.5	2	0	0	2	2	2	0	SHP2-interacting	transmembrane	adaptor	protein,	SIT
DUF4231	PF14015.1	gi|257051661|ref|YP_003129494.1|	-	4.5	7.2	8.2	0.15	12.0	0.3	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4231)
NfeD	PF01957.13	gi|257051661|ref|YP_003129494.1|	-	5	7.2	13.2	0.22	11.6	0.9	2.5	2	0	0	2	2	2	0	NfeD-like	C-terminal,	partner-binding
FixP_N	PF14715.1	gi|257051662|ref|YP_003129495.1|	-	0.2	11.0	0.2	0.2	11.0	0.1	1.9	2	0	0	2	2	2	0	N-terminal	domain	of	cytochrome	oxidase-cbb3,	FixP
MgtC	PF02308.11	gi|257051662|ref|YP_003129495.1|	-	0.24	11.2	2.8	2	8.2	0.3	2.0	2	0	0	2	2	2	0	MgtC	family
DUF2723	PF11028.3	gi|257051663|ref|YP_003129496.1|	-	0.019	14.4	0.9	0.023	14.1	0.6	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2723)
IncA	PF04156.9	gi|257051663|ref|YP_003129496.1|	-	0.042	13.4	4.5	0.05	13.1	3.1	1.1	1	0	0	1	1	1	0	IncA	protein
DUF308	PF03729.8	gi|257051663|ref|YP_003129496.1|	-	0.066	13.2	5.7	0.1	12.5	3.9	1.3	1	0	0	1	1	1	0	Short	repeat	of	unknown	function	(DUF308)
ABC2_membrane_2	PF12679.2	gi|257051663|ref|YP_003129496.1|	-	0.23	10.3	2.7	0.28	10.0	1.9	1.1	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.2	gi|257051663|ref|YP_003129496.1|	-	0.36	9.8	3.3	0.48	9.3	2.3	1.1	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
Cytochrom_B_C	PF00032.12	gi|257051664|ref|YP_003129497.1|	-	6.3e-08	32.7	0.0	1.3e-07	31.7	0.0	1.6	1	1	0	1	1	1	1	Cytochrome	b(C-terminal)/b6/petD
Jiraiya	PF15038.1	gi|257051664|ref|YP_003129497.1|	-	0.14	11.6	1.4	0.62	9.4	0.0	2.1	2	0	0	2	2	2	0	Jiraiya
Cytochrom_B_N_2	PF13631.1	gi|257051665|ref|YP_003129498.1|	-	8.5e-41	139.5	13.1	9.8e-41	139.3	7.6	1.9	2	0	0	2	2	2	1	Cytochrome	b(N-terminal)/b6/petB
Cytochrom_B_N	PF00033.14	gi|257051665|ref|YP_003129498.1|	-	1.8e-12	47.0	15.8	2.5e-12	46.5	11.0	1.2	1	0	0	1	1	1	1	Cytochrome	b(N-terminal)/b6/petB
COX15-CtaA	PF02628.10	gi|257051665|ref|YP_003129498.1|	-	0.00061	18.7	2.4	0.00061	18.7	1.6	1.8	1	1	1	2	2	2	1	Cytochrome	oxidase	assembly	protein
Ni_hydr_CYTB	PF01292.15	gi|257051665|ref|YP_003129498.1|	-	0.041	13.2	19.0	0.13	11.6	2.6	2.2	1	1	1	2	2	2	0	Prokaryotic	cytochrome	b561
PepSY_TM	PF03929.11	gi|257051665|ref|YP_003129498.1|	-	0.41	11.1	0.1	0.41	11.1	0.1	4.1	4	1	0	4	4	4	0	PepSY-associated	TM	helix
Rieske	PF00355.21	gi|257051666|ref|YP_003129499.1|	-	8.4e-07	28.4	0.1	1.9e-06	27.3	0.1	1.6	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
ABC2_membrane	PF01061.19	gi|257051667|ref|YP_003129500.1|	-	0.068	12.3	1.9	0.082	12.0	1.3	1.1	1	0	0	1	1	1	0	ABC-2	type	transporter
Copper-bind	PF00127.15	gi|257051668|ref|YP_003129501.1|	-	2.3e-13	50.2	0.2	8.8e-13	48.3	0.1	1.9	1	1	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
TAT_signal	PF10518.4	gi|257051668|ref|YP_003129501.1|	-	0.0069	16.2	4.7	0.0069	16.2	3.3	2.8	3	0	0	3	3	3	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
UCR_Fe-S_N	PF10399.4	gi|257051668|ref|YP_003129501.1|	-	8.3	5.6	9.1	33	3.7	6.3	2.1	1	1	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
Sensor	PF13796.1	gi|257051669|ref|YP_003129502.1|	-	0.014	15.0	1.3	0.023	14.3	0.9	1.3	1	0	0	1	1	1	0	Putative	sensor
IncA	PF04156.9	gi|257051669|ref|YP_003129502.1|	-	0.11	12.0	1.3	0.21	11.1	0.9	1.4	1	0	0	1	1	1	0	IncA	protein
Cytochrom_B561	PF03188.11	gi|257051670|ref|YP_003129503.1|	-	0.043	13.6	2.9	0.092	12.5	2.0	1.6	1	0	0	1	1	1	0	Eukaryotic	cytochrome	b561
DUF3923	PF13061.1	gi|257051670|ref|YP_003129503.1|	-	0.41	10.5	0.1	0.41	10.5	0.0	2.8	3	1	1	4	4	4	0	Protein	of	unknown	function	(DUF3923)
HhH-GPD	PF00730.20	gi|257051671|ref|YP_003129504.1|	-	5.6e-22	78.0	0.0	9.8e-22	77.2	0.0	1.4	2	0	0	2	2	2	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH	PF00633.18	gi|257051671|ref|YP_003129504.1|	-	1.5e-09	37.0	2.5	3.7e-09	35.7	0.0	2.8	2	1	1	3	3	3	1	Helix-hairpin-helix	motif
EndIII_4Fe-2S	PF10576.4	gi|257051671|ref|YP_003129504.1|	-	0.00019	21.4	3.4	0.00032	20.7	2.4	1.4	1	0	0	1	1	1	1	Iron-sulfur	binding	domain	of	endonuclease	III
HHH_5	PF14520.1	gi|257051671|ref|YP_003129504.1|	-	0.00024	21.2	0.1	0.11	12.6	0.0	2.5	2	1	0	2	2	2	2	Helix-hairpin-helix	domain
Noelin-1	PF12308.3	gi|257051671|ref|YP_003129504.1|	-	0.018	14.7	0.2	0.039	13.7	0.1	1.5	1	0	0	1	1	1	0	Neurogenesis	glycoprotein
HHH_8	PF14716.1	gi|257051671|ref|YP_003129504.1|	-	0.12	12.5	0.0	0.38	10.9	0.0	2.0	1	1	0	1	1	1	0	Helix-hairpin-helix	domain
Acetyltransf_3	PF13302.1	gi|257051672|ref|YP_003129505.1|	-	2.3e-28	99.1	0.0	2.6e-28	98.9	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.1	gi|257051672|ref|YP_003129505.1|	-	2.2e-17	63.4	0.0	2.6e-17	63.2	0.0	1.0	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.19	gi|257051672|ref|YP_003129505.1|	-	3.6e-14	52.5	0.0	5.9e-14	51.8	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_8	PF13523.1	gi|257051672|ref|YP_003129505.1|	-	4.9e-13	49.2	0.1	2.7e-12	46.8	0.0	1.8	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.1	gi|257051672|ref|YP_003129505.1|	-	9.1e-06	25.7	0.0	1.1e-05	25.4	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.1	gi|257051672|ref|YP_003129505.1|	-	8e-05	22.7	0.0	0.00012	22.1	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|257051672|ref|YP_003129505.1|	-	0.00017	21.2	0.0	0.00031	20.4	0.0	1.4	1	0	0	1	1	1	1	FR47-like	protein
RIO1	PF01163.17	gi|257051673|ref|YP_003129506.1|	-	7.4e-11	41.7	0.0	1.3e-10	40.9	0.0	1.3	1	0	0	1	1	1	1	RIO1	family
APH	PF01636.18	gi|257051673|ref|YP_003129506.1|	-	3.8e-07	30.0	2.9	0.0061	16.3	0.9	2.3	1	1	1	2	2	2	2	Phosphotransferase	enzyme	family
Pkinase	PF00069.20	gi|257051673|ref|YP_003129506.1|	-	2.9e-06	26.6	0.0	3.6e-06	26.3	0.0	1.1	1	0	0	1	1	1	1	Protein	kinase	domain
Kdo	PF06293.9	gi|257051673|ref|YP_003129506.1|	-	5.5e-05	22.3	0.1	0.0002	20.5	0.0	1.7	1	1	0	1	1	1	1	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
Fructosamin_kin	PF03881.9	gi|257051673|ref|YP_003129506.1|	-	0.017	14.1	0.1	3.5	6.5	0.0	2.3	1	1	1	2	2	2	0	Fructosamine	kinase
DXPR_C	PF13288.1	gi|257051673|ref|YP_003129506.1|	-	0.11	12.4	0.0	1.6	8.7	0.0	2.2	2	0	0	2	2	2	0	DXP	reductoisomerase	C-terminal	domain
WaaY	PF06176.6	gi|257051673|ref|YP_003129506.1|	-	0.13	11.5	0.0	0.18	10.9	0.0	1.1	1	0	0	1	1	1	0	Lipopolysaccharide	core	biosynthesis	protein	(WaaY)
EamA	PF00892.15	gi|257051674|ref|YP_003129507.1|	-	6.1e-26	90.9	28.2	6.5e-13	48.8	7.1	2.2	2	0	0	2	2	2	2	EamA-like	transporter	family
EmrE	PF13536.1	gi|257051674|ref|YP_003129507.1|	-	0.00014	22.0	8.4	0.00014	22.0	5.8	3.4	2	2	1	3	3	3	1	Multidrug	resistance	efflux	transporter
Polyketide_cyc2	PF10604.4	gi|257051675|ref|YP_003129508.1|	-	8.3e-11	42.2	1.4	9.1e-11	42.0	1.0	1.0	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
Polyketide_cyc	PF03364.15	gi|257051675|ref|YP_003129508.1|	-	2.4e-09	37.2	0.0	3.1e-09	36.9	0.0	1.1	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
ELFV_dehydrog	PF00208.16	gi|257051676|ref|YP_003129509.1|	-	2.6e-68	230.2	0.4	3.4e-68	229.8	0.3	1.2	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
ELFV_dehydrog_N	PF02812.13	gi|257051676|ref|YP_003129509.1|	-	9.6e-50	167.5	0.0	1.5e-49	166.9	0.0	1.3	1	0	0	1	1	1	1	Glu/Leu/Phe/Val	dehydrogenase,	dimerisation	domain
AlaDh_PNT_C	PF01262.16	gi|257051676|ref|YP_003129509.1|	-	0.014	14.9	0.6	0.024	14.2	0.0	1.6	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
2-Hacid_dh_C	PF02826.14	gi|257051676|ref|YP_003129509.1|	-	0.014	14.5	0.9	0.039	13.1	0.0	2.0	2	0	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Oxidored_nitro	PF00148.14	gi|257051676|ref|YP_003129509.1|	-	0.053	12.1	0.1	0.079	11.5	0.0	1.2	1	0	0	1	1	1	0	Nitrogenase	component	1	type	Oxidoreductase
DUF1028	PF06267.7	gi|257051677|ref|YP_003129510.1|	-	1e-46	158.8	0.0	1.2e-46	158.4	0.0	1.1	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF1028)
CAAD	PF14159.1	gi|257051678|ref|YP_003129511.1|	-	0.088	12.4	0.8	0.31	10.7	0.0	1.9	2	0	0	2	2	2	0	CAAD	domains	of	cyanobacterial	aminoacyl-tRNA	synthetase
PLDc_N	PF13396.1	gi|257051678|ref|YP_003129511.1|	-	0.14	11.8	2.4	0.47	10.1	1.6	2.0	1	1	0	1	1	1	0	Phospholipase_D-nuclease	N-terminal
YjgP_YjgQ	PF03739.9	gi|257051678|ref|YP_003129511.1|	-	0.18	10.4	1.3	0.22	10.2	0.9	1.0	1	0	0	1	1	1	0	Predicted	permease	YjgP/YjgQ	family
TMEMspv1-c74-12	PF11044.3	gi|257051678|ref|YP_003129511.1|	-	3.5	7.2	6.1	0.97	9.0	0.5	2.1	2	0	0	2	2	2	0	Plectrovirus	spv1-c74	ORF	12	transmembrane	protein
PAP2	PF01569.16	gi|257051679|ref|YP_003129512.1|	-	0.43	10.2	15.9	3.5	7.3	10.7	2.5	1	1	1	2	2	2	0	PAP2	superfamily
MarR_2	PF12802.2	gi|257051680|ref|YP_003129513.1|	-	3.7e-07	29.6	0.0	5.3e-07	29.2	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.5	gi|257051680|ref|YP_003129513.1|	-	3.7e-06	26.4	0.1	5.9e-06	25.7	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
TrmB	PF01978.14	gi|257051680|ref|YP_003129513.1|	-	6.6e-06	25.7	0.0	1.1e-05	25.0	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Rrf2	PF02082.15	gi|257051680|ref|YP_003129513.1|	-	0.00023	21.1	0.0	0.00035	20.6	0.0	1.2	1	0	0	1	1	1	1	Transcriptional	regulator
Sulfolobus_pRN	PF05584.6	gi|257051680|ref|YP_003129513.1|	-	0.0014	18.5	0.0	0.0019	18.1	0.0	1.2	1	0	0	1	1	1	1	Sulfolobus	plasmid	regulatory	protein
HTH_Crp_2	PF13545.1	gi|257051680|ref|YP_003129513.1|	-	0.0017	18.1	0.0	0.0024	17.5	0.0	1.2	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_24	PF13412.1	gi|257051680|ref|YP_003129513.1|	-	0.002	17.4	0.0	0.0028	17.0	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_27	PF13463.1	gi|257051680|ref|YP_003129513.1|	-	0.003	17.8	0.0	0.0043	17.3	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
MarR	PF01047.17	gi|257051680|ref|YP_003129513.1|	-	0.0031	17.1	0.0	0.0048	16.5	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.2	gi|257051680|ref|YP_003129513.1|	-	0.0051	16.5	0.0	0.0071	16.1	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
TFIIE_alpha	PF02002.12	gi|257051680|ref|YP_003129513.1|	-	0.078	12.4	0.0	0.13	11.7	0.0	1.4	1	1	0	1	1	1	0	TFIIE	alpha	subunit
DUF3906	PF13046.1	gi|257051680|ref|YP_003129513.1|	-	0.16	11.6	0.0	0.23	11.0	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3906)
FG-GAP_2	PF14312.1	gi|257051681|ref|YP_003129514.1|	-	3.9e-116	378.9	48.5	6.1e-18	64.5	0.5	7.1	7	0	0	7	7	7	7	FG-GAP	repeat
ydhR	PF08803.6	gi|257051681|ref|YP_003129514.1|	-	9.8e-05	22.3	3.3	42	4.2	0.0	6.2	7	0	0	7	7	7	1	Putative	mono-oxygenase	ydhR
TYA	PF01021.14	gi|257051681|ref|YP_003129514.1|	-	0.42	10.8	3.5	3.2	8.0	0.0	3.5	4	1	1	5	5	5	0	TYA	transposon	protein
Fer2	PF00111.22	gi|257051683|ref|YP_003129516.1|	-	1.2e-11	44.1	0.8	2e-11	43.4	0.5	1.4	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_4	PF13510.1	gi|257051683|ref|YP_003129516.1|	-	0.088	12.6	0.0	0.16	11.8	0.0	1.4	1	0	0	1	1	1	0	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_3	PF13085.1	gi|257051683|ref|YP_003129516.1|	-	0.11	12.2	0.1	0.16	11.8	0.0	1.2	1	0	0	1	1	1	0	2Fe-2S	iron-sulfur	cluster	binding	domain
BmKX	PF09132.5	gi|257051683|ref|YP_003129516.1|	-	1.8	8.4	6.3	13	5.7	0.5	2.3	2	0	0	2	2	2	0	BmKX
Thiolase_N	PF00108.18	gi|257051684|ref|YP_003129517.1|	-	1.3e-16	60.4	2.4	4.4e-14	52.0	0.2	2.3	1	1	1	2	2	2	2	Thiolase,	N-terminal	domain
ketoacyl-synt	PF00109.21	gi|257051684|ref|YP_003129517.1|	-	4.2e-09	36.2	11.2	1.5e-08	34.4	2.3	3.4	2	2	2	4	4	4	2	Beta-ketoacyl	synthase,	N-terminal	domain
Thiolase_C	PF02803.13	gi|257051684|ref|YP_003129517.1|	-	3.2e-08	33.0	0.1	3.2e-08	33.0	0.1	2.5	3	1	0	3	3	3	1	Thiolase,	C-terminal	domain
Ketoacyl-synt_C	PF02801.17	gi|257051684|ref|YP_003129517.1|	-	0.00025	20.8	1.1	0.0084	15.9	0.6	3.2	2	1	0	2	2	2	1	Beta-ketoacyl	synthase,	C-terminal	domain
ACP_syn_III	PF08545.5	gi|257051684|ref|YP_003129517.1|	-	0.21	11.2	2.9	1.1	8.9	0.3	2.6	2	0	0	2	2	2	0	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
DUF35	PF01796.12	gi|257051685|ref|YP_003129518.1|	-	8e-11	42.0	0.4	1.2e-10	41.4	0.3	1.2	1	0	0	1	1	1	1	DUF35	OB-fold	domain
DUF35_N	PF12172.3	gi|257051685|ref|YP_003129518.1|	-	0.0042	16.9	0.9	0.011	15.5	0.4	1.9	2	0	0	2	2	2	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
AICARFT_IMPCHas	PF01808.13	gi|257051686|ref|YP_003129519.1|	-	3.3e-88	295.8	0.1	4.4e-88	295.3	0.1	1.1	1	0	0	1	1	1	1	AICARFT/IMPCHase	bienzyme
Formyl_trans_N	PF00551.14	gi|257051686|ref|YP_003129519.1|	-	2.5e-42	144.4	0.0	5.6e-42	143.3	0.0	1.6	2	0	0	2	2	2	1	Formyl	transferase
LPAM_1	PF08139.7	gi|257051687|ref|YP_003129520.1|	-	0.34	11.2	1.4	0.55	10.5	1.0	1.4	1	0	0	1	1	1	0	Prokaryotic	membrane	lipoprotein	lipid	attachment	site
Peptidase_MA_2	PF13485.1	gi|257051688|ref|YP_003129521.1|	-	0.0022	18.0	0.1	0.0049	16.9	0.0	1.6	1	0	0	1	1	1	1	Peptidase	MA	superfamily
Peptidase_M43	PF05572.8	gi|257051688|ref|YP_003129521.1|	-	0.011	15.3	0.0	0.024	14.2	0.0	1.6	1	0	0	1	1	1	0	Pregnancy-associated	plasma	protein-A
DUF2268	PF10026.4	gi|257051688|ref|YP_003129521.1|	-	0.12	11.6	0.0	16	4.8	0.0	2.5	2	0	0	2	2	2	0	Predicted	Zn-dependent	protease	(DUF2268)
MLTD_N	PF06474.7	gi|257051688|ref|YP_003129521.1|	-	0.43	10.8	1.7	0.81	9.9	1.2	1.4	1	0	0	1	1	1	0	MltD	lipid	attachment	motif
DUF4348	PF14254.1	gi|257051688|ref|YP_003129521.1|	-	0.77	8.8	6.1	2.3	7.2	0.6	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4348)
Mucin	PF01456.12	gi|257051688|ref|YP_003129521.1|	-	2.1	8.1	24.5	0.27	11.0	13.5	2.0	2	0	0	2	2	2	0	Mucin-like	glycoprotein
SSP160	PF06933.6	gi|257051688|ref|YP_003129521.1|	-	9.9	3.9	11.4	16	3.2	7.9	1.3	1	0	0	1	1	1	0	Special	lobe-specific	silk	protein	SSP160
Pterin_bind	PF00809.17	gi|257051689|ref|YP_003129522.1|	-	1.6e-71	240.0	0.2	2.8e-71	239.2	0.1	1.4	1	0	0	1	1	1	1	Pterin	binding	enzyme
Mur_ligase_M	PF08245.7	gi|257051689|ref|YP_003129522.1|	-	1.5e-14	54.4	0.0	3e-14	53.5	0.0	1.5	1	0	0	1	1	1	1	Mur	ligase	middle	domain
Mur_ligase_C	PF02875.16	gi|257051689|ref|YP_003129522.1|	-	2.2e-08	34.0	0.0	7.2e-08	32.3	0.0	2.0	1	0	0	1	1	1	1	Mur	ligase	family,	glutamate	ligase	domain
Radical_SAM	PF04055.16	gi|257051689|ref|YP_003129522.1|	-	0.095	12.8	0.1	0.98	9.5	0.0	2.7	2	1	1	3	3	3	0	Radical	SAM	superfamily
Glyco_trans_4_4	PF13579.1	gi|257051690|ref|YP_003129523.1|	-	1.1e-22	80.8	9.1	1.1e-22	80.8	6.3	2.3	2	0	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glycos_transf_1	PF00534.15	gi|257051690|ref|YP_003129523.1|	-	1.6e-15	56.9	0.0	2.3e-15	56.4	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.1	gi|257051690|ref|YP_003129523.1|	-	2.3e-15	56.7	0.0	1.2e-14	54.4	0.0	2.0	1	1	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_2	PF13477.1	gi|257051690|ref|YP_003129523.1|	-	0.0016	18.2	0.0	0.0032	17.2	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	4-like
Fe-ADH_2	PF13685.1	gi|257051691|ref|YP_003129524.1|	-	7.4e-65	218.7	0.5	9.4e-65	218.3	0.3	1.1	1	0	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
Fe-ADH	PF00465.14	gi|257051691|ref|YP_003129524.1|	-	1.1e-23	83.4	4.1	1.8e-23	82.8	2.8	1.2	1	0	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
DHQ_synthase	PF01761.15	gi|257051691|ref|YP_003129524.1|	-	1.3e-12	47.2	0.2	2.7e-12	46.1	0.1	1.4	1	1	0	1	1	1	1	3-dehydroquinate	synthase
AP_endonuc_2	PF01261.19	gi|257051691|ref|YP_003129524.1|	-	0.017	14.4	0.2	0.14	11.4	0.1	2.2	1	1	0	1	1	1	0	Xylose	isomerase-like	TIM	barrel
Ferritin	PF00210.19	gi|257051692|ref|YP_003129525.1|	-	3.7e-20	72.1	1.1	4e-20	72.0	0.8	1.0	1	0	0	1	1	1	1	Ferritin-like	domain
Rubrerythrin	PF02915.12	gi|257051692|ref|YP_003129525.1|	-	1.1e-07	32.1	1.0	1.5e-07	31.8	0.7	1.1	1	0	0	1	1	1	1	Rubrerythrin
DUF2383	PF09537.5	gi|257051692|ref|YP_003129525.1|	-	0.009	16.2	1.3	1.5	9.0	0.3	2.5	2	2	0	2	2	2	2	Domain	of	unknown	function	(DUF2383)
DUF296	PF03479.10	gi|257051693|ref|YP_003129526.1|	-	6.4e-13	48.3	0.0	8.5e-13	47.9	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF296)
Methyltransf_6	PF03737.10	gi|257051695|ref|YP_003129528.1|	-	3.9e-14	52.7	0.7	7.1e-14	51.9	0.5	1.5	1	1	0	1	1	1	1	Demethylmenaquinone	methyltransferase
Pyr_redox_2	PF07992.9	gi|257051696|ref|YP_003129529.1|	-	2.7e-23	82.9	0.3	9.1e-11	42.0	0.0	3.4	2	1	1	3	3	3	3	Pyridine	nucleotide-disulphide	oxidoreductase
Fer4_20	PF14691.1	gi|257051696|ref|YP_003129529.1|	-	9.9e-23	79.8	0.0	1.6e-22	79.2	0.0	1.3	1	0	0	1	1	1	1	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Pyr_redox	PF00070.22	gi|257051696|ref|YP_003129529.1|	-	2.8e-12	46.8	0.1	1.4e-07	31.7	0.1	2.8	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.1	gi|257051696|ref|YP_003129529.1|	-	1.2e-11	44.4	0.4	1.5e-10	40.9	0.0	2.7	3	0	0	3	3	3	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_3	PF13738.1	gi|257051696|ref|YP_003129529.1|	-	1.2e-10	41.7	0.3	0.00046	20.2	0.0	2.4	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Amino_oxidase	PF01593.19	gi|257051696|ref|YP_003129529.1|	-	7.7e-08	31.8	0.5	7.2e-07	28.6	0.1	2.4	3	0	0	3	3	3	1	Flavin	containing	amine	oxidoreductase
HI0933_like	PF03486.9	gi|257051696|ref|YP_003129529.1|	-	1.9e-07	29.9	0.4	8.2e-06	24.5	0.0	2.2	2	0	0	2	2	2	1	HI0933-like	protein
Thi4	PF01946.12	gi|257051696|ref|YP_003129529.1|	-	3.9e-07	29.3	0.7	1.9e-06	27.1	0.0	2.0	2	0	0	2	2	2	1	Thi4	family
FAD_binding_3	PF01494.14	gi|257051696|ref|YP_003129529.1|	-	1.4e-06	27.6	0.6	2.4e-06	26.8	0.0	1.7	2	0	0	2	2	2	1	FAD	binding	domain
DAO	PF01266.19	gi|257051696|ref|YP_003129529.1|	-	1.4e-06	27.4	4.2	5.2e-06	25.6	0.1	2.8	3	0	0	3	3	3	1	FAD	dependent	oxidoreductase
FAD_oxidored	PF12831.2	gi|257051696|ref|YP_003129529.1|	-	2.3e-06	26.9	3.6	4.3e-05	22.7	0.0	2.3	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.19	gi|257051696|ref|YP_003129529.1|	-	3.4e-06	26.1	6.1	1.9e-05	23.6	0.2	3.0	3	0	0	3	3	3	1	FAD	binding	domain
NAD_binding_7	PF13241.1	gi|257051696|ref|YP_003129529.1|	-	1e-05	25.6	0.0	0.036	14.3	0.0	2.5	2	0	0	2	2	2	2	Putative	NAD(P)-binding
AlaDh_PNT_C	PF01262.16	gi|257051696|ref|YP_003129529.1|	-	4e-05	23.2	0.0	0.0082	15.7	0.0	2.4	2	0	0	2	2	2	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
GIDA	PF01134.17	gi|257051696|ref|YP_003129529.1|	-	5.3e-05	22.2	0.2	0.0037	16.1	0.0	2.2	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
FMO-like	PF00743.14	gi|257051696|ref|YP_003129529.1|	-	0.00014	20.1	0.0	0.0042	15.3	0.0	2.1	2	0	0	2	2	2	1	Flavin-binding	monooxygenase-like
Lycopene_cycl	PF05834.7	gi|257051696|ref|YP_003129529.1|	-	0.00052	19.0	0.1	0.078	11.8	0.1	2.4	2	0	0	2	2	2	1	Lycopene	cyclase	protein
NAD_binding_9	PF13454.1	gi|257051696|ref|YP_003129529.1|	-	0.00087	19.0	0.1	0.0063	16.2	0.0	2.3	2	0	0	2	2	2	1	FAD-NAD(P)-binding
K_oxygenase	PF13434.1	gi|257051696|ref|YP_003129529.1|	-	0.001	18.0	0.0	0.17	10.7	0.0	2.5	3	0	0	3	3	3	1	L-lysine	6-monooxygenase	(NADPH-requiring)
3HCDH_N	PF02737.13	gi|257051696|ref|YP_003129529.1|	-	0.0027	17.3	0.3	0.012	15.2	0.0	2.0	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_10	PF13460.1	gi|257051696|ref|YP_003129529.1|	-	0.0039	17.2	0.1	0.31	11.0	0.2	2.8	2	0	0	2	2	2	1	NADH(P)-binding
Trp_halogenase	PF04820.9	gi|257051696|ref|YP_003129529.1|	-	0.014	14.0	0.1	0.19	10.2	0.1	2.1	2	0	0	2	2	2	0	Tryptophan	halogenase
Rossmann-like	PF10727.4	gi|257051696|ref|YP_003129529.1|	-	0.015	15.0	0.0	0.035	13.8	0.0	1.6	1	0	0	1	1	1	0	Rossmann-like	domain
TrkA_N	PF02254.13	gi|257051696|ref|YP_003129529.1|	-	0.018	15.0	0.5	0.34	10.9	0.0	2.5	3	0	0	3	3	2	0	TrkA-N	domain
YjeF_N	PF03853.10	gi|257051696|ref|YP_003129529.1|	-	0.025	14.2	0.0	4.2	6.9	0.0	2.3	2	0	0	2	2	2	0	YjeF-related	protein	N-terminus
AdoHcyase_NAD	PF00670.16	gi|257051696|ref|YP_003129529.1|	-	0.034	13.9	0.5	0.46	10.3	0.1	2.2	2	0	0	2	2	2	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
NAD_Gly3P_dh_N	PF01210.18	gi|257051696|ref|YP_003129529.1|	-	0.04	13.6	0.1	0.083	12.6	0.0	1.6	2	0	0	2	2	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
ApbA	PF02558.11	gi|257051696|ref|YP_003129529.1|	-	0.042	13.2	0.2	0.15	11.5	0.1	2.0	1	1	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
Shikimate_DH	PF01488.15	gi|257051696|ref|YP_003129529.1|	-	0.046	13.8	0.0	9.1	6.3	0.0	2.7	3	1	0	3	3	2	0	Shikimate	/	quinate	5-dehydrogenase
2-Hacid_dh_C	PF02826.14	gi|257051696|ref|YP_003129529.1|	-	0.057	12.5	0.0	1.9	7.5	0.0	2.2	2	0	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Fer4_11	PF13247.1	gi|257051696|ref|YP_003129529.1|	-	0.083	12.7	0.9	0.18	11.6	0.6	1.6	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
NAD_binding_2	PF03446.10	gi|257051696|ref|YP_003129529.1|	-	0.11	12.2	0.0	0.22	11.3	0.0	1.5	1	0	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
F420_oxidored	PF03807.12	gi|257051696|ref|YP_003129529.1|	-	0.13	12.7	1.4	1.2	9.5	0.1	2.9	3	0	0	3	3	3	0	NADP	oxidoreductase	coenzyme	F420-dependent
UDPG_MGDP_dh_N	PF03721.9	gi|257051696|ref|YP_003129529.1|	-	0.17	11.2	0.0	0.38	10.1	0.0	1.6	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Glu_synthase	PF01645.12	gi|257051697|ref|YP_003129530.1|	-	8.7e-151	501.9	0.1	6e-150	499.2	0.0	2.0	2	0	0	2	2	2	1	Conserved	region	in	glutamate	synthase
GATase_2	PF00310.16	gi|257051697|ref|YP_003129530.1|	-	2.5e-126	421.2	0.0	3.4e-126	420.7	0.0	1.2	1	0	0	1	1	1	1	Glutamine	amidotransferases	class-II
Glu_syn_central	PF04898.9	gi|257051697|ref|YP_003129530.1|	-	2.5e-112	374.8	0.0	4.3e-112	374.0	0.0	1.4	1	0	0	1	1	1	1	Glutamate	synthase	central	domain
GXGXG	PF01493.14	gi|257051697|ref|YP_003129530.1|	-	7.2e-60	201.4	10.6	1.3e-59	200.5	7.3	1.4	1	0	0	1	1	1	1	GXGXG	motif
FMN_dh	PF01070.13	gi|257051697|ref|YP_003129530.1|	-	0.0035	16.2	1.3	0.0035	16.2	0.9	2.3	3	0	0	3	3	3	1	FMN-dependent	dehydrogenase
Acetyltransf_10	PF13673.1	gi|257051698|ref|YP_003129531.1|	-	5e-10	39.5	0.0	5.8e-10	39.3	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.19	gi|257051698|ref|YP_003129531.1|	-	4.8e-08	32.9	0.0	6.7e-08	32.4	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.1	gi|257051698|ref|YP_003129531.1|	-	8.9e-06	25.7	0.0	1.2e-05	25.3	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.1	gi|257051698|ref|YP_003129531.1|	-	0.00037	20.3	0.0	0.00053	19.8	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|257051698|ref|YP_003129531.1|	-	0.0023	17.6	0.0	0.0038	16.9	0.0	1.5	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_CG	PF14542.1	gi|257051698|ref|YP_003129531.1|	-	0.006	16.4	0.0	0.0091	15.8	0.0	1.3	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Acetyltransf_13	PF13880.1	gi|257051698|ref|YP_003129531.1|	-	0.021	14.5	0.0	0.043	13.5	0.0	1.4	1	0	0	1	1	1	0	ESCO1/2	acetyl-transferase
Acetyltransf_3	PF13302.1	gi|257051698|ref|YP_003129531.1|	-	0.038	14.1	0.0	0.048	13.8	0.0	1.3	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Nudix_N	PF12535.3	gi|257051698|ref|YP_003129531.1|	-	0.13	11.7	0.0	0.26	10.7	0.0	1.5	1	0	0	1	1	1	0	Hydrolase	of	X-linked	nucleoside	diphosphate	N	terminal
Mem_trans	PF03547.13	gi|257051700|ref|YP_003129533.1|	-	6.9e-25	87.1	14.7	3.6e-15	55.1	7.2	2.0	1	1	1	2	2	2	2	Membrane	transport	protein
SBF	PF01758.11	gi|257051700|ref|YP_003129533.1|	-	0.00069	19.0	6.8	0.00069	19.0	4.7	3.1	3	0	0	3	3	3	1	Sodium	Bile	acid	symporter	family
Flavoprotein	PF02441.14	gi|257051701|ref|YP_003129534.1|	-	5.1e-29	100.5	0.1	6.4e-29	100.2	0.1	1.1	1	0	0	1	1	1	1	Flavoprotein
DUF126	PF01989.11	gi|257051702|ref|YP_003129535.1|	-	4.5e-34	115.9	0.0	7.6e-34	115.2	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF126
DUF521	PF04412.8	gi|257051703|ref|YP_003129536.1|	-	2.9e-140	467.3	0.0	3.3e-140	467.1	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF521)
UbiD	PF01977.11	gi|257051704|ref|YP_003129537.1|	-	2.9e-95	319.1	2.0	3.3e-95	318.9	1.4	1.0	1	0	0	1	1	1	1	3-octaprenyl-4-hydroxybenzoate	carboxy-lyase
tRNA-synt_2c	PF01411.14	gi|257051705|ref|YP_003129538.1|	-	4.5e-14	51.6	0.0	6e-14	51.2	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(A)
tRNA_SAD	PF07973.9	gi|257051705|ref|YP_003129538.1|	-	1.5e-13	50.3	0.2	2.7e-13	49.5	0.1	1.5	1	0	0	1	1	1	1	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
DUF3042	PF11240.3	gi|257051705|ref|YP_003129538.1|	-	0.14	11.9	0.1	0.41	10.4	0.1	1.8	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3042)
DUF2371	PF10177.4	gi|257051706|ref|YP_003129539.1|	-	0.016	15.0	3.5	0.18	11.6	0.0	2.1	2	0	0	2	2	2	0	Uncharacterised	conserved	protein	(DUF2371)
DUF3068	PF11271.3	gi|257051706|ref|YP_003129539.1|	-	0.032	13.3	0.1	0.032	13.3	0.0	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3068)
DUF3185	PF11381.3	gi|257051706|ref|YP_003129539.1|	-	0.52	10.1	8.7	1.4	8.7	0.2	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3185)
Methyltransf_26	PF13659.1	gi|257051707|ref|YP_003129540.1|	-	1.5e-15	57.2	0.3	2.9e-15	56.3	0.2	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|257051707|ref|YP_003129540.1|	-	5.5e-09	35.6	0.0	7.9e-09	35.1	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_11	PF08241.7	gi|257051707|ref|YP_003129540.1|	-	9.7e-09	35.6	0.0	2.5e-07	31.0	0.0	2.2	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|257051707|ref|YP_003129540.1|	-	1.7e-08	34.1	0.0	2.9e-08	33.4	0.0	1.4	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|257051707|ref|YP_003129540.1|	-	3.5e-07	30.0	0.0	6.9e-07	29.1	0.0	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|257051707|ref|YP_003129540.1|	-	4.4e-07	30.4	0.0	7.4e-07	29.7	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|257051707|ref|YP_003129540.1|	-	3.6e-05	24.1	0.1	0.00013	22.3	0.0	2.0	2	1	0	2	2	2	1	Methyltransferase	domain
TrkA_N	PF02254.13	gi|257051707|ref|YP_003129540.1|	-	0.00048	20.0	0.1	0.14	12.1	0.0	2.2	2	0	0	2	2	2	1	TrkA-N	domain
PrmA	PF06325.8	gi|257051707|ref|YP_003129540.1|	-	0.00062	18.9	0.8	0.0009	18.4	0.6	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_32	PF13679.1	gi|257051707|ref|YP_003129540.1|	-	0.001	18.7	0.0	0.0016	18.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
UPF0146	PF03686.8	gi|257051707|ref|YP_003129540.1|	-	0.0016	18.2	0.0	0.0026	17.5	0.0	1.3	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0146)
Methyltransf_25	PF13649.1	gi|257051707|ref|YP_003129540.1|	-	0.0038	17.5	0.0	0.011	16.1	0.0	2.0	1	1	0	1	1	1	1	Methyltransferase	domain
MetW	PF07021.7	gi|257051707|ref|YP_003129540.1|	-	0.01	15.2	0.0	0.016	14.6	0.0	1.2	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
PCMT	PF01135.14	gi|257051707|ref|YP_003129540.1|	-	0.012	15.1	0.1	0.022	14.2	0.0	1.4	2	0	0	2	2	2	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
CMAS	PF02353.15	gi|257051707|ref|YP_003129540.1|	-	0.019	14.0	0.0	0.24	10.4	0.0	1.9	2	0	0	2	2	2	0	Mycolic	acid	cyclopropane	synthetase
TPMT	PF05724.6	gi|257051707|ref|YP_003129540.1|	-	0.029	13.7	0.1	0.055	12.9	0.0	1.4	1	0	0	1	1	1	0	Thiopurine	S-methyltransferase	(TPMT)
UDPG_MGDP_dh_N	PF03721.9	gi|257051707|ref|YP_003129540.1|	-	0.059	12.7	0.0	0.093	12.1	0.0	1.2	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Methyltransf_10	PF05971.7	gi|257051707|ref|YP_003129540.1|	-	0.098	11.7	0.1	0.33	10.0	0.1	1.8	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF890)
RrnaAD	PF00398.15	gi|257051708|ref|YP_003129541.1|	-	2.5e-46	157.8	0.0	3e-46	157.5	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_26	PF13659.1	gi|257051708|ref|YP_003129541.1|	-	3.8e-08	33.3	0.2	6.9e-08	32.5	0.1	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|257051708|ref|YP_003129541.1|	-	1.8e-05	25.2	0.1	6.5e-05	23.4	0.0	2.0	2	0	0	2	2	2	1	Methyltransferase	domain
DUF655	PF04919.7	gi|257051709|ref|YP_003129542.1|	-	4.6e-62	208.9	0.0	5.4e-62	208.7	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF655)
HHH_6	PF14579.1	gi|257051709|ref|YP_003129542.1|	-	0.00036	20.5	0.0	0.0012	18.8	0.0	1.8	1	1	1	2	2	2	1	Helix-hairpin-helix	motif
HHH_3	PF12836.2	gi|257051709|ref|YP_003129542.1|	-	0.00045	20.0	0.0	0.00098	19.0	0.0	1.6	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
RNA_pol_Rpb4	PF03874.11	gi|257051710|ref|YP_003129543.1|	-	2.5e-14	53.2	0.2	3e-14	53.0	0.1	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb4
DUF1932	PF09130.6	gi|257051710|ref|YP_003129543.1|	-	0.053	13.2	0.2	0.079	12.6	0.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1932)
RNA_pol_Rpb1_6	PF04992.9	gi|257051710|ref|YP_003129543.1|	-	0.1	12.3	0.1	0.15	11.8	0.1	1.3	1	0	0	1	1	1	0	RNA	polymerase	Rpb1,	domain	6
Ribosomal_L21e	PF01157.13	gi|257051711|ref|YP_003129544.1|	-	2.5e-31	107.4	0.0	2.8e-31	107.2	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L21e
EF1_GNE	PF00736.14	gi|257051712|ref|YP_003129545.1|	-	1.5e-22	79.0	0.5	1.6e-22	78.9	0.4	1.0	1	0	0	1	1	1	1	EF-1	guanine	nucleotide	exchange	domain
DUF1610	PF07754.6	gi|257051713|ref|YP_003129546.1|	-	3.9e-09	36.4	16.7	8.2e-05	22.6	2.0	2.6	2	1	1	3	3	3	2	Domain	of	unknown	function	(DUF1610)
zf-Mss51	PF13824.1	gi|257051713|ref|YP_003129546.1|	-	0.00032	20.4	13.6	0.014	15.2	1.8	2.9	1	1	1	2	2	2	2	Zinc-finger	of	mitochondrial	splicing	suppressor	51
OrfB_Zn_ribbon	PF07282.6	gi|257051713|ref|YP_003129546.1|	-	0.00079	19.0	11.1	0.01	15.4	4.2	2.2	1	1	1	2	2	2	1	Putative	transposase	DNA-binding	domain
Zn_Tnp_IS91	PF14319.1	gi|257051713|ref|YP_003129546.1|	-	0.0022	17.4	9.2	0.0026	17.2	6.4	1.1	1	0	0	1	1	1	1	Transposase	zinc-binding	domain
DZR	PF12773.2	gi|257051713|ref|YP_003129546.1|	-	0.0048	16.6	13.4	0.0089	15.8	1.4	2.4	1	1	1	2	2	2	2	Double	zinc	ribbon
PolC_DP2	PF03833.8	gi|257051713|ref|YP_003129546.1|	-	0.0067	14.1	7.2	0.0071	14.0	5.0	1.0	1	0	0	1	1	1	1	DNA	polymerase	II	large	subunit	DP2
zf-C2H2	PF00096.21	gi|257051713|ref|YP_003129546.1|	-	0.014	15.6	12.8	2.4	8.6	0.4	3.5	3	0	0	3	3	3	0	Zinc	finger,	C2H2	type
UPF0547	PF10571.4	gi|257051713|ref|YP_003129546.1|	-	0.015	15.0	16.4	0.26	11.0	0.1	3.9	4	0	0	4	4	4	0	Uncharacterised	protein	family	UPF0547
PhnA_Zn_Ribbon	PF08274.7	gi|257051713|ref|YP_003129546.1|	-	0.028	14.1	13.1	0.073	12.8	1.2	3.5	1	1	2	3	3	3	0	PhnA	Zinc-Ribbon
C1_3	PF07649.7	gi|257051713|ref|YP_003129546.1|	-	0.04	13.9	13.4	2.4	8.2	5.6	2.8	1	1	1	2	2	2	0	C1-like	domain
C1_1	PF00130.17	gi|257051713|ref|YP_003129546.1|	-	0.042	13.5	1.7	0.042	13.5	1.2	2.5	1	1	1	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
zf-H2C2_2	PF13465.1	gi|257051713|ref|YP_003129546.1|	-	0.054	13.8	16.5	1.3	9.4	0.5	3.9	2	1	2	4	4	4	0	Zinc-finger	double	domain
DNA_RNApol_7kD	PF03604.8	gi|257051713|ref|YP_003129546.1|	-	0.055	12.9	2.3	0.055	12.9	1.6	3.2	2	2	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
NMDAR2_C	PF10565.4	gi|257051713|ref|YP_003129546.1|	-	0.072	11.7	6.1	0.079	11.6	4.2	1.0	1	0	0	1	1	1	0	N-methyl	D-aspartate	receptor	2B3	C-terminus
DUF2296	PF10058.4	gi|257051713|ref|YP_003129546.1|	-	0.17	11.6	11.4	2.8	7.7	0.1	3.8	2	1	2	4	4	4	0	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
Zn-ribbon_8	PF09723.5	gi|257051713|ref|YP_003129546.1|	-	0.17	11.8	17.6	16	5.5	9.4	3.9	2	1	0	2	2	2	0	Zinc	ribbon	domain
Zn_Tnp_IS1595	PF12760.2	gi|257051713|ref|YP_003129546.1|	-	0.18	11.6	16.7	0.46	10.3	8.4	3.1	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
DUF2039	PF10217.4	gi|257051713|ref|YP_003129546.1|	-	0.22	11.5	7.1	0.33	10.9	4.9	1.3	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2039)
C1_2	PF03107.11	gi|257051713|ref|YP_003129546.1|	-	0.25	11.4	8.0	17	5.6	1.8	2.8	1	1	1	2	2	2	0	C1	domain
FYVE_2	PF02318.11	gi|257051713|ref|YP_003129546.1|	-	0.29	11.0	7.2	0.32	10.8	5.0	1.1	1	0	0	1	1	1	0	FYVE-type	zinc	finger
zf-UBP	PF02148.14	gi|257051713|ref|YP_003129546.1|	-	0.41	10.7	7.1	0.39	10.8	0.5	2.5	2	1	0	2	2	2	0	Zn-finger	in	ubiquitin-hydrolases	and	other	protein
zinc_ribbon_5	PF13719.1	gi|257051713|ref|YP_003129546.1|	-	0.43	10.2	0.1	0.43	10.2	0.1	3.9	1	1	3	4	4	4	0	zinc-ribbon	domain
Sgf11	PF08209.6	gi|257051713|ref|YP_003129546.1|	-	0.44	9.8	0.1	0.44	9.8	0.1	3.8	2	1	2	4	4	4	0	Sgf11	(transcriptional	regulation	protein)
zf-ribbon_3	PF13248.1	gi|257051713|ref|YP_003129546.1|	-	0.47	9.7	17.0	0.82	8.9	2.7	3.6	1	1	1	2	2	2	0	zinc-ribbon	domain
zf-C3HC4_3	PF13920.1	gi|257051713|ref|YP_003129546.1|	-	0.59	9.8	14.5	0.086	12.5	2.1	2.8	2	1	1	3	3	3	0	Zinc	finger,	C3HC4	type	(RING	finger)
zf-UBR	PF02207.15	gi|257051713|ref|YP_003129546.1|	-	0.62	9.8	12.2	29	4.4	8.4	2.6	1	1	0	1	1	1	0	Putative	zinc	finger	in	N-recognin	(UBR	box)
ParA	PF10609.4	gi|257051713|ref|YP_003129546.1|	-	0.65	9.9	3.0	1.9	8.4	0.7	2.1	1	1	1	2	2	2	0	ParA/MinD	ATPase	like
Ribosomal_L34e	PF01199.13	gi|257051713|ref|YP_003129546.1|	-	0.73	10.0	4.1	7.5	6.8	0.2	2.3	1	1	1	2	2	2	0	Ribosomal	protein	L34e
zinc_ribbon_2	PF13240.1	gi|257051713|ref|YP_003129546.1|	-	0.82	9.2	18.5	0.37	10.3	0.6	4.0	3	1	0	3	3	3	0	zinc-ribbon	domain
zinc-ribbons_6	PF07191.7	gi|257051713|ref|YP_003129546.1|	-	0.94	9.3	12.2	10	6.0	4.6	2.3	1	1	1	2	2	2	0	zinc-ribbons
HypA	PF01155.14	gi|257051713|ref|YP_003129546.1|	-	0.99	9.1	11.4	0.11	12.1	0.8	2.3	1	1	1	2	2	2	0	Hydrogenase	expression/synthesis	hypA	family
Ribosomal_L37ae	PF01780.14	gi|257051713|ref|YP_003129546.1|	-	1	9.2	9.3	1.2	9.0	2.3	2.7	1	1	1	2	2	2	0	Ribosomal	L37ae	protein	family
zf-HIT	PF04438.11	gi|257051713|ref|YP_003129546.1|	-	1	9.0	18.7	6.5	6.4	2.1	3.6	1	1	1	2	2	2	0	HIT	zinc	finger
zinc_ribbon_4	PF13717.1	gi|257051713|ref|YP_003129546.1|	-	1.1	9.0	17.1	2	8.1	2.0	3.9	1	1	3	4	4	4	0	zinc-ribbon	domain
TFIIS_C	PF01096.13	gi|257051713|ref|YP_003129546.1|	-	1.2	8.8	16.4	2.8	7.6	0.4	4.0	2	1	2	4	4	4	0	Transcription	factor	S-II	(TFIIS)
IBR	PF01485.16	gi|257051713|ref|YP_003129546.1|	-	1.3	8.9	12.6	12	5.9	8.7	2.2	1	1	0	1	1	1	0	IBR	domain
C1_4	PF07975.7	gi|257051713|ref|YP_003129546.1|	-	2.1	8.4	11.6	1.1e+02	2.9	8.1	3.0	1	1	0	1	1	1	0	TFIIH	C1-like	domain
zf-C2HC5	PF06221.8	gi|257051713|ref|YP_003129546.1|	-	2.2	8.0	11.7	1.8	8.3	4.3	2.4	1	1	1	2	2	2	0	Putative	zinc	finger	motif,	C2HC5-type
zf-RING_5	PF14634.1	gi|257051713|ref|YP_003129546.1|	-	2.3	8.0	13.3	1.9	8.2	1.1	2.5	1	1	1	2	2	2	0	zinc-RING	finger	domain
NMD3	PF04981.8	gi|257051713|ref|YP_003129546.1|	-	2.5	7.1	8.9	3	6.8	6.2	1.0	1	0	0	1	1	1	0	NMD3	family
zf-AN1	PF01428.11	gi|257051713|ref|YP_003129546.1|	-	2.6	8.0	13.3	4	7.3	1.8	2.9	2	1	1	3	3	3	0	AN1-like	Zinc	finger
A2L_zn_ribbon	PF08792.5	gi|257051713|ref|YP_003129546.1|	-	4	7.0	14.7	1e+02	2.5	2.4	3.6	1	1	1	2	2	2	0	A2L	zinc	ribbon	domain
Ribosomal_L32p	PF01783.18	gi|257051713|ref|YP_003129546.1|	-	4.2	7.6	6.7	4.7e+02	1.0	4.6	3.1	1	1	0	1	1	1	0	Ribosomal	L32p	protein	family
zf-MYND	PF01753.13	gi|257051713|ref|YP_003129546.1|	-	4.3	7.2	9.7	1.2e+02	2.6	7.0	2.5	1	1	0	1	1	1	0	MYND	finger
zf-C2H2_6	PF13912.1	gi|257051713|ref|YP_003129546.1|	-	4.5	7.3	14.7	4.3	7.3	0.4	3.6	4	0	0	4	4	4	0	C2H2-type	zinc	finger
RNHCP	PF12647.2	gi|257051713|ref|YP_003129546.1|	-	4.7	7.1	11.1	1.5e+02	2.2	7.7	2.3	1	1	0	1	1	1	0	RNHCP	domain
zf-B_box	PF00643.19	gi|257051713|ref|YP_003129546.1|	-	6.3	6.7	11.3	8.4	6.3	4.3	2.4	1	1	1	2	2	2	0	B-box	zinc	finger
Rubredoxin	PF00301.15	gi|257051713|ref|YP_003129546.1|	-	6.8	6.6	17.4	8.6	6.3	0.3	3.8	1	1	2	3	3	3	0	Rubredoxin
DNA_ligase_ZBD	PF03119.11	gi|257051713|ref|YP_003129546.1|	-	7.9	6.2	13.5	1.6	8.4	1.2	3.3	2	1	1	3	3	3	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
RNA_pol_L_2	PF13656.1	gi|257051714|ref|YP_003129547.1|	-	2e-18	65.5	0.0	2.5e-18	65.2	0.0	1.2	1	0	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
RNA_pol_L	PF01193.19	gi|257051714|ref|YP_003129547.1|	-	1.6e-07	30.3	0.0	2.1e-07	29.9	0.0	1.2	1	0	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
DUF2082	PF09855.4	gi|257051715|ref|YP_003129548.1|	-	2.5e-28	97.7	0.4	2.7e-28	97.5	0.3	1.0	1	0	0	1	1	1	1	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
zf-ribbon_3	PF13248.1	gi|257051715|ref|YP_003129548.1|	-	0.00011	21.2	1.0	0.31	10.3	0.1	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
Lar_restr_allev	PF14354.1	gi|257051715|ref|YP_003129548.1|	-	0.0011	19.1	1.1	0.0018	18.5	0.7	1.4	1	1	0	1	1	1	1	Restriction	alleviation	protein	Lar
Zn_Tnp_IS1595	PF12760.2	gi|257051715|ref|YP_003129548.1|	-	0.0023	17.7	1.8	0.65	9.8	0.2	2.1	1	1	1	2	2	2	2	Transposase	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|257051715|ref|YP_003129548.1|	-	0.0044	16.4	3.8	0.68	9.4	0.6	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
DUF2387	PF09526.5	gi|257051715|ref|YP_003129548.1|	-	0.0079	16.0	1.7	0.11	12.3	1.1	2.0	1	1	1	2	2	2	1	Probable	metal-binding	protein	(DUF2387)
TFIIS_C	PF01096.13	gi|257051715|ref|YP_003129548.1|	-	0.014	14.9	3.4	1.2	8.7	0.3	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
TF_Zn_Ribbon	PF08271.7	gi|257051715|ref|YP_003129548.1|	-	0.016	14.4	4.1	0.21	10.9	2.9	2.1	1	1	0	1	1	1	0	TFIIB	zinc-binding
DZR	PF12773.2	gi|257051715|ref|YP_003129548.1|	-	0.016	14.9	0.6	0.041	13.6	0.4	1.6	1	1	0	1	1	1	0	Double	zinc	ribbon
Elf1	PF05129.8	gi|257051715|ref|YP_003129548.1|	-	0.021	14.5	0.1	0.039	13.6	0.1	1.4	1	1	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
Zn-ribbon_8	PF09723.5	gi|257051715|ref|YP_003129548.1|	-	0.03	14.2	0.4	2.8	7.9	0.1	2.2	2	0	0	2	2	2	0	Zinc	ribbon	domain
Zn_Tnp_IS91	PF14319.1	gi|257051715|ref|YP_003129548.1|	-	0.052	13.0	0.2	2.2	7.8	0.0	2.0	2	0	0	2	2	2	0	Transposase	zinc-binding	domain
Spt4	PF06093.8	gi|257051715|ref|YP_003129548.1|	-	0.052	13.4	1.1	1.6	8.6	0.0	2.0	1	1	1	2	2	2	0	Spt4/RpoE2	zinc	finger
OrfB_Zn_ribbon	PF07282.6	gi|257051715|ref|YP_003129548.1|	-	0.07	12.7	2.5	1	9.0	1.7	2.0	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zf-C4_Topoisom	PF01396.14	gi|257051715|ref|YP_003129548.1|	-	0.071	12.6	1.3	7.1	6.2	0.7	2.2	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
zinc_ribbon_5	PF13719.1	gi|257051715|ref|YP_003129548.1|	-	0.095	12.3	1.0	6.6	6.4	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
DNA_RNApol_7kD	PF03604.8	gi|257051715|ref|YP_003129548.1|	-	0.095	12.1	2.9	0.55	9.7	0.0	2.1	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
Ribosomal_S27e	PF01667.12	gi|257051715|ref|YP_003129548.1|	-	0.11	12.0	1.0	6.4	6.3	0.1	2.3	2	0	0	2	2	2	0	Ribosomal	protein	S27
zinc_ribbon_4	PF13717.1	gi|257051715|ref|YP_003129548.1|	-	0.13	11.9	1.6	6.2	6.6	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
A2L_zn_ribbon	PF08792.5	gi|257051715|ref|YP_003129548.1|	-	0.14	11.6	2.3	7.1	6.2	0.1	2.2	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
DUF2225	PF09986.4	gi|257051715|ref|YP_003129548.1|	-	0.16	11.4	1.0	0.27	10.6	0.7	1.5	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2225)
CpXC	PF14353.1	gi|257051715|ref|YP_003129548.1|	-	0.43	10.5	2.0	1.8	8.5	1.4	1.8	1	1	0	1	1	1	0	CpXC	protein
zf-IS66	PF13005.2	gi|257051715|ref|YP_003129548.1|	-	0.44	10.5	4.7	3.5	7.6	3.4	2.0	1	1	1	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
UPF0547	PF10571.4	gi|257051715|ref|YP_003129548.1|	-	0.46	10.2	5.4	3.6	7.3	1.1	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
zf-ZPR1	PF03367.8	gi|257051715|ref|YP_003129548.1|	-	0.49	9.5	2.3	3.1	6.9	0.1	2.0	1	1	1	2	2	2	0	ZPR1	zinc-finger	domain
RNA_POL_M_15KD	PF02150.11	gi|257051715|ref|YP_003129548.1|	-	0.72	9.5	2.8	5.9	6.6	0.1	2.2	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
PhnA_Zn_Ribbon	PF08274.7	gi|257051715|ref|YP_003129548.1|	-	2.2	8.1	5.0	2.6	7.8	0.7	2.1	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
zf-ISL3	PF14690.1	gi|257051715|ref|YP_003129548.1|	-	2.6	8.1	5.6	8.9	6.4	1.1	2.2	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zf-HYPF	PF07503.7	gi|257051715|ref|YP_003129548.1|	-	3.4	7.1	7.2	2.4	7.6	0.9	2.3	2	1	0	2	2	2	0	HypF	finger
DUF4574	PF15141.1	gi|257051716|ref|YP_003129549.1|	-	0.077	12.7	0.3	0.14	11.8	0.2	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4574)
His_biosynth	PF00977.16	gi|257051717|ref|YP_003129550.1|	-	3.7e-80	268.4	0.6	4.2e-80	268.2	0.4	1.0	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
Dus	PF01207.12	gi|257051717|ref|YP_003129550.1|	-	1.1e-07	31.0	0.1	4.9e-05	22.3	0.0	2.1	2	0	0	2	2	2	2	Dihydrouridine	synthase	(Dus)
ThiG	PF05690.9	gi|257051717|ref|YP_003129550.1|	-	2.8e-07	29.8	0.3	0.00015	20.9	0.0	2.1	2	0	0	2	2	2	2	Thiazole	biosynthesis	protein	ThiG
NMO	PF03060.10	gi|257051717|ref|YP_003129550.1|	-	3.2e-05	23.2	0.8	0.0045	16.1	0.1	2.1	2	0	0	2	2	2	2	Nitronate	monooxygenase
PcrB	PF01884.12	gi|257051717|ref|YP_003129550.1|	-	0.00052	19.3	0.8	0.0017	17.6	0.2	1.9	1	1	1	2	2	2	1	PcrB	family
DHO_dh	PF01180.16	gi|257051717|ref|YP_003129550.1|	-	0.0012	17.8	0.1	0.017	14.1	0.0	2.1	2	0	0	2	2	2	1	Dihydroorotate	dehydrogenase
IMPDH	PF00478.20	gi|257051717|ref|YP_003129550.1|	-	0.012	14.5	0.1	0.028	13.3	0.0	1.6	2	0	0	2	2	2	0	IMP	dehydrogenase	/	GMP	reductase	domain
TMP-TENI	PF02581.12	gi|257051717|ref|YP_003129550.1|	-	0.037	13.1	0.1	0.2	10.7	0.0	2.1	2	1	0	2	2	2	0	Thiamine	monophosphate	synthase/TENI
FMN_dh	PF01070.13	gi|257051717|ref|YP_003129550.1|	-	0.039	12.7	0.3	0.093	11.5	0.2	1.5	1	0	0	1	1	1	0	FMN-dependent	dehydrogenase
Glu_synthase	PF01645.12	gi|257051717|ref|YP_003129550.1|	-	0.077	11.9	0.1	0.11	11.3	0.0	1.2	1	0	0	1	1	1	0	Conserved	region	in	glutamate	synthase
IGPS	PF00218.16	gi|257051717|ref|YP_003129550.1|	-	0.087	11.8	0.0	0.47	9.4	0.0	1.9	2	0	0	2	2	2	0	Indole-3-glycerol	phosphate	synthase
G3P_antiterm	PF04309.7	gi|257051717|ref|YP_003129550.1|	-	0.12	11.3	0.0	0.22	10.5	0.0	1.4	1	0	0	1	1	1	0	Glycerol-3-phosphate	responsive	antiterminator
YcfA	PF07927.7	gi|257051718|ref|YP_003129551.1|	-	2.9e-10	39.9	0.0	3.5e-10	39.6	0.0	1.1	1	0	0	1	1	1	1	YcfA-like	protein
UPF0150	PF03681.10	gi|257051719|ref|YP_003129552.1|	-	4e-07	29.5	0.2	8.3e-07	28.5	0.1	1.6	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0150)
Trypan_PARP	PF05887.6	gi|257051720|ref|YP_003129553.1|	-	0.049	13.4	0.4	0.058	13.2	0.3	1.1	1	0	0	1	1	1	0	Procyclic	acidic	repetitive	protein	(PARP)
AIRS	PF00586.19	gi|257051721|ref|YP_003129554.1|	-	6.9e-44	148.0	7.5	8.5e-26	90.0	0.1	3.6	3	0	0	3	3	3	2	AIR	synthase	related	protein,	N-terminal	domain
AIRS_C	PF02769.17	gi|257051721|ref|YP_003129554.1|	-	3.3e-36	124.5	8.3	2.6e-28	98.9	0.8	3.0	3	0	0	3	3	3	2	AIR	synthase	related	protein,	C-terminal	domain
Fn3-like	PF14310.1	gi|257051722|ref|YP_003129555.1|	-	0.0073	16.2	0.0	0.019	14.8	0.0	1.8	1	1	0	1	1	1	1	Fibronectin	type	III-like	domain
Aida_C2	PF14186.1	gi|257051722|ref|YP_003129555.1|	-	0.17	11.1	0.0	0.22	10.7	0.0	1.2	1	0	0	1	1	1	0	Cytoskeletal	adhesion
CitMHS	PF03600.11	gi|257051723|ref|YP_003129556.1|	-	4.3e-47	160.3	0.0	4.6e-40	137.2	0.0	2.1	1	1	1	2	2	2	2	Citrate	transporter
TrkA_C	PF02080.16	gi|257051723|ref|YP_003129556.1|	-	1e-24	85.8	2.9	1.5e-12	46.8	0.1	3.0	3	0	0	3	3	3	2	TrkA-C	domain
Na_sulph_symp	PF00939.14	gi|257051723|ref|YP_003129556.1|	-	6.3e-20	71.4	35.7	2.6e-12	46.3	12.8	3.1	3	0	0	3	3	3	3	Sodium:sulfate	symporter	transmembrane	region
Metallophos_2	PF12850.2	gi|257051724|ref|YP_003129557.1|	-	1e-13	51.4	0.0	1e-12	48.1	0.0	2.0	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
PBC	PF03792.8	gi|257051724|ref|YP_003129557.1|	-	0.0025	17.5	0.0	0.0044	16.7	0.0	1.3	1	0	0	1	1	1	1	PBC	domain
Metallophos	PF00149.23	gi|257051724|ref|YP_003129557.1|	-	0.0041	16.5	2.3	0.071	12.4	1.1	2.5	2	1	0	2	2	2	1	Calcineurin-like	phosphoesterase
HMGL-like	PF00682.14	gi|257051725|ref|YP_003129558.1|	-	7.4e-57	192.7	6.3	1.2e-56	192.0	4.4	1.4	1	0	0	1	1	1	1	HMGL-like
Radical_SAM	PF04055.16	gi|257051725|ref|YP_003129558.1|	-	0.0009	19.4	0.1	0.0034	17.5	0.0	2.0	2	0	0	2	2	2	1	Radical	SAM	superfamily
TPP_enzyme_C	PF02775.16	gi|257051726|ref|YP_003129559.1|	-	1.7e-52	177.0	0.0	5e-52	175.5	0.0	1.9	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
TPP_enzyme_N	PF02776.13	gi|257051726|ref|YP_003129559.1|	-	2.1e-52	177.0	1.2	6.1e-51	172.3	0.9	2.5	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_M	PF00205.17	gi|257051726|ref|YP_003129559.1|	-	2.4e-41	140.7	0.1	4.7e-41	139.7	0.0	1.5	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	central	domain
CO_dh	PF02552.11	gi|257051726|ref|YP_003129559.1|	-	0.047	13.2	0.0	0.088	12.3	0.0	1.4	1	0	0	1	1	1	0	CO	dehydrogenase	beta	subunit/acetyl-CoA	synthase	epsilon	subunit
ALS_ss_C	PF10369.4	gi|257051727|ref|YP_003129560.1|	-	7.7e-23	80.0	0.4	1.2e-22	79.3	0.3	1.3	1	0	0	1	1	1	1	Small	subunit	of	acetolactate	synthase
ACT_5	PF13710.1	gi|257051727|ref|YP_003129560.1|	-	1e-14	54.0	0.0	7.1e-14	51.3	0.0	2.1	2	0	0	2	2	2	1	ACT	domain
ACT	PF01842.20	gi|257051727|ref|YP_003129560.1|	-	7.3e-13	47.7	0.4	1.7e-12	46.5	0.0	1.8	2	0	0	2	2	2	1	ACT	domain
ACT_4	PF13291.1	gi|257051727|ref|YP_003129560.1|	-	0.0049	17.1	0.0	0.012	15.9	0.0	1.6	1	0	0	1	1	1	1	ACT	domain
NIL	PF09383.5	gi|257051727|ref|YP_003129560.1|	-	0.011	15.2	0.2	2.1	7.9	0.0	2.5	2	1	0	2	2	2	0	NIL	domain
BMC	PF00936.14	gi|257051727|ref|YP_003129560.1|	-	0.049	13.3	0.7	0.12	12.0	0.4	1.9	1	1	0	1	1	1	0	BMC	domain
Acylphosphatase	PF00708.13	gi|257051727|ref|YP_003129560.1|	-	0.085	12.9	0.6	16	5.6	0.1	2.4	2	0	0	2	2	2	0	Acylphosphatase
KH_1	PF00013.24	gi|257051727|ref|YP_003129560.1|	-	0.35	10.5	1.8	2.7	7.6	0.2	2.6	2	1	0	2	2	2	0	KH	domain
IlvN	PF07991.7	gi|257051728|ref|YP_003129561.1|	-	6e-67	224.1	0.1	7.8e-67	223.7	0.1	1.1	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
IlvC	PF01450.14	gi|257051728|ref|YP_003129561.1|	-	7.7e-54	181.5	0.4	1e-53	181.1	0.3	1.2	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
F420_oxidored	PF03807.12	gi|257051728|ref|YP_003129561.1|	-	2.2e-07	31.1	0.0	5e-07	30.0	0.0	1.6	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
2-Hacid_dh_C	PF02826.14	gi|257051728|ref|YP_003129561.1|	-	3.9e-06	26.1	0.0	7.2e-06	25.2	0.0	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_2	PF03446.10	gi|257051728|ref|YP_003129561.1|	-	0.0011	18.8	0.0	0.0023	17.7	0.0	1.5	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NAD_Gly3P_dh_N	PF01210.18	gi|257051728|ref|YP_003129561.1|	-	0.079	12.6	0.1	1.8	8.2	0.0	2.2	1	1	0	2	2	2	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Mur_ligase	PF01225.20	gi|257051728|ref|YP_003129561.1|	-	0.096	12.7	0.2	0.25	11.4	0.1	1.6	1	0	0	1	1	1	0	Mur	ligase	family,	catalytic	domain
Aconitase	PF00330.15	gi|257051729|ref|YP_003129562.1|	-	1.6e-148	495.0	0.0	1.8e-148	494.9	0.0	1.0	1	0	0	1	1	1	1	Aconitase	family	(aconitate	hydratase)
DUF521	PF04412.8	gi|257051729|ref|YP_003129562.1|	-	0.016	13.7	0.0	0.026	13.0	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF521)
Aconitase_C	PF00694.14	gi|257051730|ref|YP_003129563.1|	-	2.6e-21	76.1	0.0	3.4e-21	75.7	0.0	1.2	1	0	0	1	1	1	1	Aconitase	C-terminal	domain
DUF2347	PF09804.4	gi|257051731|ref|YP_003129564.1|	-	0.06	12.6	0.0	0.075	12.2	0.0	1.1	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2347)
UPF0184	PF03670.8	gi|257051731|ref|YP_003129564.1|	-	0.15	12.2	2.3	0.34	11.1	1.0	1.9	1	1	1	2	2	2	0	Uncharacterised	protein	family	(UPF0184)
Elong_Iki1	PF10483.4	gi|257051732|ref|YP_003129565.1|	-	0.048	13.0	0.0	0.058	12.7	0.0	1.2	1	0	0	1	1	1	0	Elongator	subunit	Iki1
DUF4404	PF14357.1	gi|257051733|ref|YP_003129566.1|	-	0.13	12.7	0.2	0.13	12.7	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4404)
F_bP_aldolase	PF01116.15	gi|257051736|ref|YP_003129569.1|	-	1.1e-78	264.2	0.0	1.3e-78	264.0	0.0	1.0	1	0	0	1	1	1	1	Fructose-bisphosphate	aldolase	class-II
TIM-br_sig_trns	PF09370.5	gi|257051736|ref|YP_003129569.1|	-	0.019	14.0	0.4	1.9	7.4	0.0	2.8	2	1	1	3	3	3	0	TIM-barrel	signal	transduction	protein
PfkB	PF00294.19	gi|257051737|ref|YP_003129570.1|	-	4.7e-44	150.7	0.2	1.1e-43	149.4	0.2	1.5	1	1	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Phos_pyr_kin	PF08543.7	gi|257051737|ref|YP_003129570.1|	-	0.0013	17.9	0.0	0.002	17.3	0.0	1.3	1	0	0	1	1	1	1	Phosphomethylpyrimidine	kinase
NAD_kinase	PF01513.16	gi|257051737|ref|YP_003129570.1|	-	0.094	11.4	0.2	0.21	10.3	0.0	1.7	1	1	1	2	2	2	0	ATP-NAD	kinase
Iso_dh	PF00180.15	gi|257051738|ref|YP_003129571.1|	-	6.5e-98	327.8	0.0	7.4e-98	327.7	0.0	1.0	1	0	0	1	1	1	1	Isocitrate/isopropylmalate	dehydrogenase
Lyase_1	PF00206.15	gi|257051739|ref|YP_003129572.1|	-	2.7e-52	177.9	0.0	3.5e-52	177.5	0.0	1.1	1	0	0	1	1	1	1	Lyase
ASL_C	PF08328.6	gi|257051739|ref|YP_003129572.1|	-	7.6e-40	135.3	0.0	1.4e-39	134.4	0.0	1.5	1	0	0	1	1	1	1	Adenylosuccinate	lyase	C-terminal
DUF2391	PF09622.5	gi|257051740|ref|YP_003129573.1|	-	0.021	13.9	0.8	0.022	13.9	0.5	1.0	1	0	0	1	1	1	0	Putative	integral	membrane	protein	(DUF2391)
DUF3784	PF12650.2	gi|257051740|ref|YP_003129573.1|	-	0.12	12.3	1.0	0.13	12.1	0.7	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3784)
NfeD	PF01957.13	gi|257051740|ref|YP_003129573.1|	-	0.17	11.9	4.4	0.18	11.9	3.1	1.0	1	0	0	1	1	1	0	NfeD-like	C-terminal,	partner-binding
DUF4233	PF14017.1	gi|257051740|ref|YP_003129573.1|	-	0.59	10.0	7.6	0.69	9.8	5.2	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4233)
HemY_N	PF07219.8	gi|257051740|ref|YP_003129573.1|	-	1.2	8.7	4.8	1	8.9	1.1	1.9	2	0	0	2	2	2	0	HemY	protein	N-terminus
Fer2	PF00111.22	gi|257051741|ref|YP_003129574.1|	-	8.5e-07	28.6	0.1	2.1e-06	27.4	0.1	1.7	1	1	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_4	PF13510.1	gi|257051741|ref|YP_003129574.1|	-	0.1	12.4	0.1	0.22	11.3	0.1	1.5	1	1	0	1	1	1	0	2Fe-2S	iron-sulfur	cluster	binding	domain
NAD_binding_1	PF00175.16	gi|257051742|ref|YP_003129575.1|	-	2.5e-16	60.2	0.0	2.1e-14	54.0	0.0	2.3	1	1	0	1	1	1	1	Oxidoreductase	NAD-binding	domain
FAD_binding_6	PF00970.19	gi|257051742|ref|YP_003129575.1|	-	5.9e-14	51.9	0.0	1e-13	51.1	0.0	1.4	1	0	0	1	1	1	1	Oxidoreductase	FAD-binding	domain
NAD_binding_6	PF08030.7	gi|257051742|ref|YP_003129575.1|	-	0.17	11.8	0.0	6.8	6.5	0.0	2.3	2	0	0	2	2	2	0	Ferric	reductase	NAD	binding	domain
Colicin_V	PF02674.11	gi|257051743|ref|YP_003129576.1|	-	0.038	13.8	3.7	0.04	13.7	2.6	1.1	1	0	0	1	1	1	0	Colicin	V	production	protein
PepSY_TM_1	PF13172.1	gi|257051743|ref|YP_003129576.1|	-	5.4	6.8	7.1	1.9	8.3	2.0	2.3	1	1	1	2	2	2	0	PepSY-associated	TM	helix
RHH_1	PF01402.16	gi|257051744|ref|YP_003129577.1|	-	0.0005	19.8	0.1	0.00092	19.0	0.0	1.5	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
GvpK	PF05121.7	gi|257051744|ref|YP_003129577.1|	-	0.0061	16.3	0.1	0.0088	15.8	0.1	1.2	1	0	0	1	1	1	1	Gas	vesicle	protein	K
SHOCT	PF09851.4	gi|257051744|ref|YP_003129577.1|	-	0.027	13.9	0.5	0.048	13.1	0.3	1.5	1	0	0	1	1	1	0	Short	C-terminal	domain
RHH_2	PF03693.9	gi|257051744|ref|YP_003129577.1|	-	0.077	13.1	0.2	5.3	7.2	0.0	2.0	1	1	1	2	2	2	0	Uncharacterised	protein	family	(UPF0156)
CSD	PF00313.17	gi|257051748|ref|YP_003129581.1|	-	3.1e-19	68.5	0.3	3.3e-19	68.4	0.2	1.0	1	0	0	1	1	1	1	'Cold-shock'	DNA-binding	domain
S1-like	PF14444.1	gi|257051748|ref|YP_003129581.1|	-	0.0068	16.1	0.5	0.0093	15.6	0.3	1.3	1	1	0	1	1	1	1	S1-like
CusF_Ec	PF11604.3	gi|257051748|ref|YP_003129581.1|	-	0.077	12.8	0.1	0.12	12.2	0.0	1.4	1	1	0	1	1	1	0	Copper	binding	periplasmic	protein	CusF
OB_RNB	PF08206.6	gi|257051748|ref|YP_003129581.1|	-	0.38	10.2	2.3	0.55	9.7	1.6	1.3	1	0	0	1	1	1	0	Ribonuclease	B	OB	domain
RNA_POL_M_15KD	PF02150.11	gi|257051749|ref|YP_003129582.1|	-	0.01	15.4	0.4	0.43	10.3	0.0	2.1	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
DUF4428	PF14471.1	gi|257051749|ref|YP_003129582.1|	-	0.02	14.6	0.7	0.1	12.3	0.5	2.0	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4428)
zf-C2H2	PF00096.21	gi|257051749|ref|YP_003129582.1|	-	0.16	12.3	2.9	0.8	10.1	0.0	2.1	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
Thioredoxin_3	PF13192.1	gi|257051750|ref|YP_003129583.1|	-	3.3e-24	84.4	0.8	3.6e-24	84.3	0.5	1.0	1	0	0	1	1	1	1	Thioredoxin	domain
Glutaredoxin	PF00462.19	gi|257051750|ref|YP_003129583.1|	-	0.00075	19.4	0.1	0.00095	19.1	0.1	1.2	1	0	0	1	1	1	1	Glutaredoxin
BLOC1_2	PF10046.4	gi|257051750|ref|YP_003129583.1|	-	0.0072	16.4	0.0	0.0095	16.0	0.0	1.2	1	0	0	1	1	1	1	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
DUF2703	PF10865.3	gi|257051750|ref|YP_003129583.1|	-	0.018	14.9	0.1	0.021	14.7	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF2703)
NPV_P10	PF05531.7	gi|257051750|ref|YP_003129583.1|	-	0.046	13.9	1.6	0.16	12.2	0.4	1.9	1	1	1	2	2	2	0	Nucleopolyhedrovirus	P10	protein
Thioredoxin_4	PF13462.1	gi|257051750|ref|YP_003129583.1|	-	0.055	13.4	0.5	2.1	8.3	0.0	2.0	1	1	1	2	2	2	0	Thioredoxin
DUF318	PF03773.8	gi|257051751|ref|YP_003129584.1|	-	8.4e-58	195.7	22.8	3e-56	190.6	15.8	2.5	1	1	0	1	1	1	1	Predicted	permease
SBF	PF01758.11	gi|257051752|ref|YP_003129585.1|	-	9.9e-43	145.7	6.9	9.9e-43	145.7	4.8	2.2	2	1	0	2	2	2	1	Sodium	Bile	acid	symporter	family
DUF4137	PF13593.1	gi|257051752|ref|YP_003129585.1|	-	1.7e-05	24.1	18.2	2.1e-05	23.7	12.6	1.1	1	0	0	1	1	1	1	SBF-like	CPA	transporter	family	(DUF4137)
DUF3464	PF11947.3	gi|257051752|ref|YP_003129585.1|	-	2.9	7.3	4.0	1.4	8.3	0.2	2.3	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3464)
HTH_20	PF12840.2	gi|257051753|ref|YP_003129586.1|	-	1.1e-08	34.6	1.9	1.9e-08	33.9	1.3	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|257051753|ref|YP_003129586.1|	-	3.6e-05	23.3	0.3	6.3e-05	22.5	0.2	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.14	gi|257051753|ref|YP_003129586.1|	-	0.0034	17.0	0.0	0.0067	16.1	0.0	1.5	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.1	gi|257051753|ref|YP_003129586.1|	-	0.004	17.4	0.1	0.0096	16.2	0.0	1.7	1	1	1	2	2	2	1	Winged	helix	DNA-binding	domain
GntR	PF00392.16	gi|257051753|ref|YP_003129586.1|	-	0.0042	16.4	2.2	0.0087	15.4	0.2	2.1	1	1	1	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
HTH_34	PF13601.1	gi|257051753|ref|YP_003129586.1|	-	0.052	13.5	0.0	0.25	11.3	0.0	1.9	1	1	1	2	2	2	0	Winged	helix	DNA-binding	domain
DUF480	PF04337.7	gi|257051753|ref|YP_003129586.1|	-	0.058	13.2	0.0	0.12	12.2	0.0	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function,	DUF480
MarR_2	PF12802.2	gi|257051753|ref|YP_003129586.1|	-	0.14	11.8	1.1	1.3	8.7	0.7	2.2	1	1	0	1	1	1	0	MarR	family
Rrf2	PF02082.15	gi|257051753|ref|YP_003129586.1|	-	0.15	12.2	0.2	0.49	10.5	0.1	2.1	1	1	1	2	2	2	0	Transcriptional	regulator
CBS	PF00571.23	gi|257051754|ref|YP_003129587.1|	-	1.2e-18	66.6	7.1	2.5e-09	36.7	1.4	2.2	2	0	0	2	2	2	2	CBS	domain
CMAS	PF02353.15	gi|257051755|ref|YP_003129588.1|	-	0.021	13.9	0.0	0.025	13.6	0.0	1.0	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
DUF420	PF04238.7	gi|257051757|ref|YP_003129590.1|	-	6.3e-36	123.2	5.3	8.8e-36	122.7	3.7	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF420)
DUF2306	PF10067.4	gi|257051757|ref|YP_003129590.1|	-	1.3e-05	25.1	7.7	1.5e-05	25.0	3.3	2.4	2	1	0	2	2	2	1	Predicted	membrane	protein	(DUF2306)
DUF1240	PF06836.7	gi|257051757|ref|YP_003129590.1|	-	0.43	10.8	2.3	0.39	10.9	0.3	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1240)
Cytochrom_B561	PF03188.11	gi|257051757|ref|YP_003129590.1|	-	0.51	10.1	5.2	0.65	9.8	0.1	2.6	1	1	1	2	2	2	0	Eukaryotic	cytochrome	b561
DUF898	PF05987.8	gi|257051757|ref|YP_003129590.1|	-	1.3	7.7	11.9	3.3	6.4	8.2	1.7	1	1	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF898)
DUF3413	PF11893.3	gi|257051757|ref|YP_003129590.1|	-	1.9	7.3	5.8	2.6	6.8	0.1	2.4	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF3413)
DUF4149	PF13664.1	gi|257051757|ref|YP_003129590.1|	-	4.4	7.4	11.9	5	7.2	1.2	2.5	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4149)
GATase_6	PF13522.1	gi|257051758|ref|YP_003129591.1|	-	1e-22	80.5	0.0	2.9e-22	79.0	0.0	1.8	2	0	0	2	2	2	1	Glutamine	amidotransferase	domain
GATase_7	PF13537.1	gi|257051758|ref|YP_003129591.1|	-	3.6e-21	75.1	0.0	1.3e-20	73.3	0.0	1.9	2	0	0	2	2	2	1	Glutamine	amidotransferase	domain
GATase_2	PF00310.16	gi|257051758|ref|YP_003129591.1|	-	1.6e-20	73.1	0.0	1.8e-14	53.2	0.0	3.1	1	1	1	2	2	2	2	Glutamine	amidotransferases	class-II
Pribosyltran	PF00156.22	gi|257051758|ref|YP_003129591.1|	-	8.5e-13	48.1	0.1	2.1e-12	46.8	0.1	1.7	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
GATase_4	PF13230.1	gi|257051758|ref|YP_003129591.1|	-	0.00017	20.3	0.0	0.00028	19.6	0.0	1.3	1	0	0	1	1	1	1	Glutamine	amidotransferases	class-II
Ribosomal_L37e	PF01907.14	gi|257051759|ref|YP_003129592.1|	-	7.9e-26	89.6	12.3	8.5e-26	89.5	8.5	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L37e
DZR	PF12773.2	gi|257051759|ref|YP_003129592.1|	-	0.0046	16.7	2.5	0.006	16.3	1.7	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_6	PF14599.1	gi|257051759|ref|YP_003129592.1|	-	0.082	12.7	1.2	0.1	12.3	0.8	1.2	1	0	0	1	1	1	0	Zinc-ribbon
zf-RanBP	PF00641.13	gi|257051759|ref|YP_003129592.1|	-	0.11	11.5	1.7	0.93	8.6	0.1	2.2	2	0	0	2	2	2	0	Zn-finger	in	Ran	binding	protein	and	others
DUF35_N	PF12172.3	gi|257051759|ref|YP_003129592.1|	-	0.13	12.2	1.5	0.19	11.6	1.0	1.2	1	0	0	1	1	1	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
HypA	PF01155.14	gi|257051759|ref|YP_003129592.1|	-	0.13	11.9	1.6	0.15	11.7	1.1	1.1	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
OrfB_Zn_ribbon	PF07282.6	gi|257051759|ref|YP_003129592.1|	-	0.13	11.9	3.7	0.17	11.5	2.6	1.3	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
DUF3716	PF12511.3	gi|257051759|ref|YP_003129592.1|	-	0.17	11.5	4.9	0.34	10.5	3.4	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3716)
zf-ribbon_3	PF13248.1	gi|257051759|ref|YP_003129592.1|	-	0.3	10.3	5.6	1.5	8.0	0.2	2.1	1	1	1	2	2	2	0	zinc-ribbon	domain
DNA_RNApol_7kD	PF03604.8	gi|257051759|ref|YP_003129592.1|	-	0.33	10.4	4.1	1.2	8.7	0.3	2.1	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-dskA_traR	PF01258.12	gi|257051759|ref|YP_003129592.1|	-	0.33	10.7	2.7	5.7	6.7	0.1	2.2	2	0	0	2	2	2	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
zinc_ribbon_2	PF13240.1	gi|257051759|ref|YP_003129592.1|	-	2.7	7.6	5.7	2.5	7.6	0.3	2.2	1	1	1	2	2	2	0	zinc-ribbon	domain
RNA_POL_M_15KD	PF02150.11	gi|257051759|ref|YP_003129592.1|	-	3.3	7.4	4.8	4.2	7.1	0.5	2.1	1	1	1	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
LSM	PF01423.17	gi|257051760|ref|YP_003129593.1|	-	1.4e-15	56.6	0.5	1.6e-15	56.3	0.3	1.1	1	0	0	1	1	1	1	LSM	domain
SM-ATX	PF14438.1	gi|257051760|ref|YP_003129593.1|	-	0.00094	19.0	0.8	0.0057	16.5	0.2	1.9	1	1	1	2	2	2	1	Ataxin	2	SM	domain
DUF2642	PF10842.3	gi|257051760|ref|YP_003129593.1|	-	0.026	14.0	0.1	0.04	13.3	0.1	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2642)
DUF4444	PF14563.1	gi|257051760|ref|YP_003129593.1|	-	0.043	13.2	0.5	0.062	12.6	0.3	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4444)
Peptidase_M42	PF05343.9	gi|257051761|ref|YP_003129594.1|	-	1.2e-80	270.4	2.8	1.4e-80	270.2	2.0	1.0	1	0	0	1	1	1	1	M42	glutamyl	aminopeptidase
Peptidase_M20	PF01546.23	gi|257051761|ref|YP_003129594.1|	-	1.7e-11	43.9	0.6	3.1e-11	43.1	0.3	1.4	1	1	0	1	1	1	1	Peptidase	family	M20/M25/M40
Peptidase_M18	PF02127.10	gi|257051761|ref|YP_003129594.1|	-	1.1e-07	30.7	0.1	5.3e-05	21.8	0.0	2.2	2	0	0	2	2	2	2	Aminopeptidase	I	zinc	metalloprotease	(M18)
Sulf_transp	PF04143.9	gi|257051763|ref|YP_003129596.1|	-	1.2e-11	44.4	28.8	3.4e-08	33.3	5.4	5.4	6	0	0	6	6	6	2	Sulphur	transport
Cupredoxin_1	PF13473.1	gi|257051764|ref|YP_003129597.1|	-	2.8e-10	40.0	0.0	3.4e-10	39.7	0.0	1.1	1	0	0	1	1	1	1	Cupredoxin-like	domain
MLIP	PF15274.1	gi|257051764|ref|YP_003129597.1|	-	0.15	11.5	0.0	0.17	11.3	0.0	1.1	1	0	0	1	1	1	0	Muscular	LMNA-interacting	protein
DUF2342	PF10103.4	gi|257051765|ref|YP_003129598.1|	-	5.9e-83	278.6	6.0	7.1e-47	160.0	0.6	2.0	1	1	1	2	2	2	2	Uncharacterised	conserved	protein	(DUF2342)
Big_4	PF07532.6	gi|257051765|ref|YP_003129598.1|	-	0.061	12.8	0.4	12	5.5	0.1	2.4	2	0	0	2	2	2	0	Bacterial	Ig-like	domain	(group	4)
Peptidase_MA_2	PF13485.1	gi|257051765|ref|YP_003129598.1|	-	0.064	13.2	0.5	0.19	11.7	0.4	1.9	1	1	0	1	1	1	0	Peptidase	MA	superfamily
HisKA	PF00512.20	gi|257051765|ref|YP_003129598.1|	-	0.079	12.9	0.1	0.32	11.0	0.1	2.0	2	0	0	2	2	2	0	His	Kinase	A	(phospho-acceptor)	domain
DOR	PF14839.1	gi|257051766|ref|YP_003129599.1|	-	0.079	12.6	0.0	0.12	12.1	0.0	1.2	1	0	0	1	1	1	0	DOR	family
DUF1317	PF07026.6	gi|257051766|ref|YP_003129599.1|	-	0.12	12.3	0.1	0.64	9.9	0.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1317)
DUF1667	PF07892.6	gi|257051767|ref|YP_003129600.1|	-	1.2e-31	108.2	0.3	1.8e-31	107.6	0.2	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1667)
Molybdop_Fe4S4	PF04879.11	gi|257051767|ref|YP_003129600.1|	-	0.00077	19.2	2.2	0.003	17.3	1.5	1.9	1	1	0	1	1	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
HCV_NS5a_1a	PF08300.8	gi|257051767|ref|YP_003129600.1|	-	0.3	11.0	1.7	0.34	10.8	0.5	1.5	2	0	0	2	2	2	0	Hepatitis	C	virus	non-structural	5a	zinc	finger	domain
Pyr_redox_2	PF07992.9	gi|257051768|ref|YP_003129601.1|	-	2e-22	80.0	0.4	3.1e-22	79.4	0.3	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|257051768|ref|YP_003129601.1|	-	5.6e-17	62.4	1.3	8.5e-13	48.8	0.5	3.2	1	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|257051768|ref|YP_003129601.1|	-	7.4e-10	39.1	2.2	0.083	13.2	0.0	3.5	3	0	0	3	3	3	3	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.19	gi|257051768|ref|YP_003129601.1|	-	7.6e-10	38.2	5.9	1.6e-05	23.9	0.3	3.7	2	2	2	4	4	4	2	FAD	binding	domain
NAD_binding_8	PF13450.1	gi|257051768|ref|YP_003129601.1|	-	1e-08	35.0	0.1	4.5e-06	26.6	0.1	2.5	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.19	gi|257051768|ref|YP_003129601.1|	-	8e-08	31.5	6.9	0.00083	18.3	0.2	2.9	2	1	1	3	3	3	2	FAD	dependent	oxidoreductase
FAD_oxidored	PF12831.2	gi|257051768|ref|YP_003129601.1|	-	9.1e-08	31.5	1.8	3.6e-07	29.6	0.8	1.9	1	1	1	2	2	2	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.9	gi|257051768|ref|YP_003129601.1|	-	9.6e-07	27.6	3.7	0.0039	15.7	0.1	3.0	3	0	0	3	3	3	2	HI0933-like	protein
FAD_binding_3	PF01494.14	gi|257051768|ref|YP_003129601.1|	-	9.8e-06	24.8	2.5	0.0014	17.7	0.0	2.5	2	1	0	2	2	2	2	FAD	binding	domain
Thi4	PF01946.12	gi|257051768|ref|YP_003129601.1|	-	0.00014	21.0	0.5	0.0014	17.8	0.0	2.4	2	0	0	2	2	2	1	Thi4	family
Lycopene_cycl	PF05834.7	gi|257051768|ref|YP_003129601.1|	-	0.00069	18.6	0.7	0.18	10.6	0.1	2.4	2	0	0	2	2	2	2	Lycopene	cyclase	protein
NAD_binding_9	PF13454.1	gi|257051768|ref|YP_003129601.1|	-	0.001	18.8	1.9	0.53	10.0	0.1	2.8	3	0	0	3	3	3	2	FAD-NAD(P)-binding
Amino_oxidase	PF01593.19	gi|257051768|ref|YP_003129601.1|	-	0.0066	15.5	0.4	2.3	7.1	0.0	2.3	2	0	0	2	2	2	2	Flavin	containing	amine	oxidoreductase
KR	PF08659.5	gi|257051768|ref|YP_003129601.1|	-	0.0071	16.0	0.1	0.061	12.9	0.1	2.2	2	0	0	2	2	2	1	KR	domain
Shikimate_DH	PF01488.15	gi|257051768|ref|YP_003129601.1|	-	0.0082	16.2	0.5	0.096	12.7	0.0	2.9	4	0	0	4	4	3	1	Shikimate	/	quinate	5-dehydrogenase
PQQ_3	PF13570.1	gi|257051768|ref|YP_003129601.1|	-	0.054	13.7	0.4	12	6.3	0.0	3.1	3	0	0	3	3	3	0	PQQ-like	domain
NAD_binding_7	PF13241.1	gi|257051768|ref|YP_003129601.1|	-	0.056	13.6	0.0	9.8	6.4	0.0	2.6	2	0	0	2	2	2	0	Putative	NAD(P)-binding
adh_short	PF00106.20	gi|257051768|ref|YP_003129601.1|	-	0.073	12.9	0.3	11	5.8	0.1	2.6	2	1	0	2	2	2	0	short	chain	dehydrogenase
F420_oxidored	PF03807.12	gi|257051768|ref|YP_003129601.1|	-	0.074	13.4	0.1	4.1	7.8	0.0	3.2	3	0	0	3	3	3	0	NADP	oxidoreductase	coenzyme	F420-dependent
K_oxygenase	PF13434.1	gi|257051768|ref|YP_003129601.1|	-	0.083	11.7	0.0	11	4.8	0.0	2.2	2	0	0	2	2	2	0	L-lysine	6-monooxygenase	(NADPH-requiring)
GIDA	PF01134.17	gi|257051768|ref|YP_003129601.1|	-	0.088	11.6	3.4	0.15	10.8	0.5	2.0	1	1	1	2	2	2	0	Glucose	inhibited	division	protein	A
DAO	PF01266.19	gi|257051769|ref|YP_003129602.1|	-	1.9e-75	254.0	0.7	2.4e-75	253.6	0.5	1.1	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Fer2_BFD	PF04324.10	gi|257051769|ref|YP_003129602.1|	-	4.9e-10	39.3	2.3	1.2e-09	38.0	1.6	1.7	1	0	0	1	1	1	1	BFD-like	[2Fe-2S]	binding	domain
Pyr_redox_2	PF07992.9	gi|257051769|ref|YP_003129602.1|	-	3.8e-06	26.9	0.4	6.8e-05	22.8	0.2	2.3	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Lycopene_cycl	PF05834.7	gi|257051769|ref|YP_003129602.1|	-	4.9e-06	25.6	0.4	0.00018	20.5	0.1	2.2	2	0	0	2	2	2	1	Lycopene	cyclase	protein
NAD_binding_8	PF13450.1	gi|257051769|ref|YP_003129602.1|	-	6.5e-06	26.0	0.1	1.8e-05	24.6	0.1	1.8	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox	PF00070.22	gi|257051769|ref|YP_003129602.1|	-	2.9e-05	24.3	0.3	0.00022	21.5	0.1	2.3	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.14	gi|257051769|ref|YP_003129602.1|	-	0.00016	20.8	0.9	0.0059	15.7	0.1	2.2	2	0	0	2	2	2	1	FAD	binding	domain
HI0933_like	PF03486.9	gi|257051769|ref|YP_003129602.1|	-	0.00031	19.3	0.5	0.04	12.4	0.0	2.1	2	0	0	2	2	2	2	HI0933-like	protein
Thi4	PF01946.12	gi|257051769|ref|YP_003129602.1|	-	0.00034	19.7	0.5	0.035	13.2	0.0	2.7	3	0	0	3	3	3	1	Thi4	family
NAD_binding_9	PF13454.1	gi|257051769|ref|YP_003129602.1|	-	0.00063	19.5	0.9	0.31	10.7	0.0	2.4	2	0	0	2	2	2	2	FAD-NAD(P)-binding
Pyr_redox_3	PF13738.1	gi|257051769|ref|YP_003129602.1|	-	0.0022	18.0	0.1	1.4	8.9	0.0	2.4	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.13	gi|257051769|ref|YP_003129602.1|	-	0.0046	16.6	0.0	0.011	15.3	0.0	1.7	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
TrkA_N	PF02254.13	gi|257051769|ref|YP_003129602.1|	-	0.0061	16.5	0.6	0.055	13.4	0.0	2.5	3	0	0	3	3	3	1	TrkA-N	domain
FAD_binding_2	PF00890.19	gi|257051769|ref|YP_003129602.1|	-	0.024	13.5	0.4	0.051	12.4	0.2	1.5	1	1	0	1	1	1	0	FAD	binding	domain
GIDA	PF01134.17	gi|257051769|ref|YP_003129602.1|	-	0.042	12.7	0.2	0.078	11.8	0.1	1.4	1	0	0	1	1	1	0	Glucose	inhibited	division	protein	A
TENA_THI-4	PF03070.11	gi|257051770|ref|YP_003129603.1|	-	8e-52	176.0	0.0	9e-52	175.8	0.0	1.0	1	0	0	1	1	1	1	TENA/THI-4/PQQC	family
TENA_THI-4	PF03070.11	gi|257051771|ref|YP_003129604.1|	-	2.2e-22	79.8	0.0	2.6e-22	79.6	0.0	1.1	1	0	0	1	1	1	1	TENA/THI-4/PQQC	family
Neil1-DNA_bind	PF09292.5	gi|257051771|ref|YP_003129604.1|	-	0.075	12.8	0.0	0.46	10.3	0.0	2.1	2	0	0	2	2	2	0	Endonuclease	VIII-like	1,	DNA	bind
SSF	PF00474.12	gi|257051772|ref|YP_003129605.1|	-	4.6e-29	101.2	24.5	9.1e-29	100.3	17.0	1.5	1	1	0	1	1	1	1	Sodium:solute	symporter	family
Arch_fla_DE	PF04659.8	gi|257051773|ref|YP_003129606.1|	-	1e-24	86.2	0.0	1.4e-24	85.7	0.0	1.1	1	0	0	1	1	1	1	Archaeal	flagella	protein
CbiA	PF01656.18	gi|257051774|ref|YP_003129607.1|	-	1.1e-30	106.5	0.2	1.4e-30	106.1	0.2	1.1	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.1	gi|257051774|ref|YP_003129607.1|	-	6.4e-11	42.4	0.0	8.1e-08	32.3	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
MipZ	PF09140.6	gi|257051774|ref|YP_003129607.1|	-	1.4e-10	40.7	2.0	8.8e-07	28.2	0.2	2.4	2	1	0	2	2	2	2	ATPase	MipZ
ArsA_ATPase	PF02374.10	gi|257051774|ref|YP_003129607.1|	-	2e-05	23.8	0.1	0.00019	20.5	0.0	2.1	2	1	0	2	2	2	1	Anion-transporting	ATPase
Fer4_NifH	PF00142.13	gi|257051774|ref|YP_003129607.1|	-	2.1e-05	23.8	0.1	0.00044	19.5	0.0	2.2	2	0	0	2	2	2	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
AAA_19	PF13245.1	gi|257051774|ref|YP_003129607.1|	-	4.6e-05	23.0	0.7	0.0013	18.4	0.1	2.4	2	0	0	2	2	2	1	Part	of	AAA	domain
YhjQ	PF06564.7	gi|257051774|ref|YP_003129607.1|	-	0.00019	20.9	0.5	0.079	12.3	0.0	2.2	2	0	0	2	2	2	2	YhjQ	protein
AAA_17	PF13207.1	gi|257051774|ref|YP_003129607.1|	-	0.011	16.5	0.0	0.2	12.4	0.0	2.2	1	1	1	2	2	2	0	AAA	domain
AAA_25	PF13481.1	gi|257051774|ref|YP_003129607.1|	-	0.019	14.3	1.7	0.036	13.4	0.1	2.2	2	1	1	3	3	3	0	AAA	domain
LpxK	PF02606.9	gi|257051774|ref|YP_003129607.1|	-	0.024	13.6	0.0	0.04	12.8	0.0	1.3	1	0	0	1	1	1	0	Tetraacyldisaccharide-1-P	4'-kinase
AAA_30	PF13604.1	gi|257051774|ref|YP_003129607.1|	-	0.027	14.0	0.1	0.075	12.5	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
Glyco_transf_4	PF13439.1	gi|257051774|ref|YP_003129607.1|	-	0.043	13.5	0.0	0.07	12.8	0.0	1.5	1	1	0	1	1	1	0	Glycosyltransferase	Family	4
PhoH	PF02562.11	gi|257051774|ref|YP_003129607.1|	-	0.11	11.7	0.0	0.17	11.0	0.0	1.3	1	0	0	1	1	1	0	PhoH-like	protein
SRP54	PF00448.17	gi|257051774|ref|YP_003129607.1|	-	0.12	11.7	0.4	2.3	7.6	0.1	2.5	3	0	0	3	3	3	0	SRP54-type	protein,	GTPase	domain
VirC1	PF07015.6	gi|257051774|ref|YP_003129607.1|	-	0.48	9.4	5.2	0.37	9.8	0.1	2.6	1	1	2	3	3	3	0	VirC1	protein
CheW	PF01584.14	gi|257051775|ref|YP_003129608.1|	-	1.1e-20	73.4	0.5	1.6e-20	72.9	0.3	1.2	1	0	0	1	1	1	1	CheW-like	domain
Daxx	PF03344.10	gi|257051775|ref|YP_003129608.1|	-	3.5	5.9	30.5	4.2	5.7	21.1	1.1	1	0	0	1	1	1	0	Daxx	Family
Pyr_redox	PF00070.22	gi|257051776|ref|YP_003129609.1|	-	4.9e-11	42.8	0.7	4e-09	36.7	0.1	2.6	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|257051776|ref|YP_003129609.1|	-	2.5e-06	27.7	0.3	0.06	13.4	0.1	3.0	2	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_2	PF07992.9	gi|257051776|ref|YP_003129609.1|	-	0.00018	21.4	2.4	0.00083	19.2	1.7	2.1	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.1	gi|257051776|ref|YP_003129609.1|	-	0.0011	18.7	4.3	0.68	9.6	0.0	3.5	2	2	1	3	3	3	2	FAD-NAD(P)-binding
NAD_binding_8	PF13450.1	gi|257051776|ref|YP_003129609.1|	-	0.0019	18.2	2.1	1.5	8.9	0.0	3.4	3	0	0	3	3	3	2	NAD(P)-binding	Rossmann-like	domain
UDPG_MGDP_dh_N	PF03721.9	gi|257051776|ref|YP_003129609.1|	-	0.03	13.7	0.4	0.13	11.6	0.0	2.2	3	0	0	3	3	3	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
TrkA_N	PF02254.13	gi|257051776|ref|YP_003129609.1|	-	0.067	13.1	0.2	0.54	10.2	0.0	2.3	2	0	0	2	2	2	0	TrkA-N	domain
GHMP_kinases_N	PF00288.21	gi|257051777|ref|YP_003129610.1|	-	2.8e-08	33.6	1.6	5e-08	32.8	1.1	1.4	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.8	gi|257051777|ref|YP_003129610.1|	-	0.0055	16.8	0.0	0.0099	16.0	0.0	1.5	1	0	0	1	1	1	1	GHMP	kinases	C	terminal
Amidohydro_4	PF13147.1	gi|257051777|ref|YP_003129610.1|	-	0.068	13.1	3.9	0.16	11.9	2.7	1.6	1	1	0	1	1	1	0	Amidohydrolase
Oxidored_q1	PF00361.15	gi|257051778|ref|YP_003129611.1|	-	9.3e-57	192.3	10.7	9.3e-57	192.3	7.4	2.2	2	1	0	2	2	2	1	NADH-Ubiquinone/plastoquinone	(complex	I),	various	chains
Oxidored_q1_N	PF00662.15	gi|257051778|ref|YP_003129611.1|	-	0.43	10.1	3.4	0.29	10.7	0.4	2.3	2	0	0	2	2	2	0	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
DUF2108	PF09881.4	gi|257051778|ref|YP_003129611.1|	-	0.44	10.3	7.0	16	5.4	0.2	4.4	3	0	0	3	3	3	0	Predicted	membrane	protein	(DUF2108)
Oxidored_q1	PF00361.15	gi|257051779|ref|YP_003129612.1|	-	1e-66	225.0	16.2	2.3e-66	223.8	11.2	1.6	1	0	0	1	1	1	1	NADH-Ubiquinone/plastoquinone	(complex	I),	various	chains
Oxidored_q1_N	PF00662.15	gi|257051779|ref|YP_003129612.1|	-	0.075	12.5	2.1	0.14	11.7	0.2	2.4	2	0	0	2	2	2	0	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
Oxidored_q5_N	PF01059.12	gi|257051779|ref|YP_003129612.1|	-	0.35	10.7	0.0	0.35	10.7	0.0	2.9	3	1	0	3	3	3	0	NADH-ubiquinone	oxidoreductase	chain	4,	amino	terminus
Oxidored_q1	PF00361.15	gi|257051780|ref|YP_003129613.1|	-	8.2e-73	244.9	11.9	8.2e-73	244.9	8.3	1.8	2	0	0	2	2	2	1	NADH-Ubiquinone/plastoquinone	(complex	I),	various	chains
Oxidored_q1_N	PF00662.15	gi|257051780|ref|YP_003129613.1|	-	5.3e-09	35.5	0.0	1.5e-08	34.0	0.0	1.8	1	0	0	1	1	1	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
Oxidored_q1_C	PF01010.14	gi|257051780|ref|YP_003129613.1|	-	0.0013	18.3	0.0	0.0043	16.5	0.0	1.8	2	0	0	2	2	2	1	NADH-Ubiquinone	oxidoreductase	(complex	I)	subunit	C-terminus
Oxidored_q2	PF00420.19	gi|257051781|ref|YP_003129614.1|	-	6e-22	77.0	6.9	6.4e-22	76.9	4.8	1.0	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
Arif-1	PF06770.6	gi|257051781|ref|YP_003129614.1|	-	0.73	9.1	3.5	0.8	9.0	2.5	1.1	1	0	0	1	1	1	0	Actin-rearrangement-inducing	factor	(Arif-1)
Oxidored_q3	PF00499.15	gi|257051783|ref|YP_003129616.1|	-	1.9e-13	50.4	1.6	2.6e-13	49.9	1.1	1.2	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	6
DUF4040	PF13244.1	gi|257051783|ref|YP_003129616.1|	-	7.3e-06	25.8	8.9	1e-05	25.4	6.1	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4040)
Bax1-I	PF01027.15	gi|257051783|ref|YP_003129616.1|	-	0.12	11.9	7.7	0.15	11.6	5.3	1.1	1	0	0	1	1	1	0	Inhibitor	of	apoptosis-promoting	Bax1
MerC	PF03203.9	gi|257051783|ref|YP_003129616.1|	-	0.15	12.4	5.8	0.23	11.8	4.0	1.4	1	1	0	1	1	1	0	MerC	mercury	resistance	protein
NAD4L	PF06235.6	gi|257051783|ref|YP_003129616.1|	-	0.56	10.0	4.7	9.3	6.1	0.1	2.3	2	1	0	2	2	2	0	NADH	dehydrogenase	subunit	4L	(NAD4L)
DUF4131	PF13567.1	gi|257051783|ref|YP_003129616.1|	-	0.79	9.1	3.0	1.1	8.5	2.1	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
IncA	PF04156.9	gi|257051783|ref|YP_003129616.1|	-	2.9	7.4	12.7	12	5.4	8.8	1.8	1	1	0	1	1	1	0	IncA	protein
UPF0233	PF06781.7	gi|257051783|ref|YP_003129616.1|	-	4.7	6.9	7.2	3	7.5	3.9	1.5	1	1	0	1	1	1	0	Uncharacterised	protein	family	(UPF0233)
ABC2_membrane_3	PF12698.2	gi|257051784|ref|YP_003129617.1|	-	0.0004	19.5	11.2	0.0004	19.5	7.7	1.7	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.2	gi|257051784|ref|YP_003129617.1|	-	0.0055	15.8	17.9	0.02	14.0	6.7	2.3	1	1	1	2	2	2	2	ABC-2	family	transporter	protein
ABC_tran	PF00005.22	gi|257051785|ref|YP_003129618.1|	-	7.2e-29	100.8	0.0	1.1e-28	100.1	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|257051785|ref|YP_003129618.1|	-	5.2e-12	46.3	0.3	1.1e-06	28.8	0.0	2.1	1	1	0	2	2	2	2	AAA	domain
AAA_29	PF13555.1	gi|257051785|ref|YP_003129618.1|	-	0.00082	18.8	0.1	0.0017	17.8	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.1	gi|257051785|ref|YP_003129618.1|	-	0.0033	17.7	0.0	0.0043	17.3	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_25	PF13481.1	gi|257051785|ref|YP_003129618.1|	-	0.0098	15.3	1.3	0.2	11.0	0.7	2.9	1	1	1	2	2	2	1	AAA	domain
SMC_N	PF02463.14	gi|257051785|ref|YP_003129618.1|	-	0.013	14.7	0.9	0.14	11.3	0.6	2.0	1	1	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
UPF0079	PF02367.12	gi|257051785|ref|YP_003129618.1|	-	0.023	14.3	0.0	0.05	13.2	0.0	1.5	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_17	PF13207.1	gi|257051785|ref|YP_003129618.1|	-	0.033	15.0	0.2	0.061	14.1	0.2	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_19	PF13245.1	gi|257051785|ref|YP_003129618.1|	-	0.04	13.6	0.0	0.1	12.3	0.0	1.7	1	0	0	1	1	1	0	Part	of	AAA	domain
AAA_10	PF12846.2	gi|257051785|ref|YP_003129618.1|	-	0.08	12.3	0.2	0.35	10.2	0.0	1.7	1	1	1	2	2	2	0	AAA-like	domain
Zeta_toxin	PF06414.7	gi|257051785|ref|YP_003129618.1|	-	0.095	11.7	0.0	0.22	10.6	0.0	1.6	1	0	0	1	1	1	0	Zeta	toxin
DUF456	PF04306.8	gi|257051786|ref|YP_003129619.1|	-	1e-26	93.6	27.8	1e-26	93.6	19.3	1.6	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF456)
DUF4177	PF13783.1	gi|257051787|ref|YP_003129620.1|	-	2.1e-07	30.4	0.0	2.5e-07	30.2	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4177)
SSV1_ORF_D-335	PF07935.6	gi|257051787|ref|YP_003129620.1|	-	0.031	14.0	0.0	0.035	13.8	0.0	1.1	1	0	0	1	1	1	0	ORF	D-335-like	protein
Fer4	PF00037.22	gi|257051788|ref|YP_003129621.1|	-	9.2e-13	47.2	9.3	3.9e-07	29.3	1.6	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.2	gi|257051788|ref|YP_003129621.1|	-	4.5e-11	42.9	10.8	7.2e-11	42.2	7.5	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|257051788|ref|YP_003129621.1|	-	2.7e-10	39.8	7.2	4.6e-10	39.1	5.0	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.1	gi|257051788|ref|YP_003129621.1|	-	1.4e-09	37.6	9.5	2.1e-09	37.0	6.6	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|257051788|ref|YP_003129621.1|	-	3.9e-09	37.1	4.7	2.5e-05	24.9	0.1	2.3	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_8	PF13183.1	gi|257051788|ref|YP_003129621.1|	-	4.6e-09	36.1	19.7	3.2e-07	30.2	7.7	1.7	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|257051788|ref|YP_003129621.1|	-	6.8e-09	35.8	11.8	1.8e-08	34.5	8.3	1.6	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|257051788|ref|YP_003129621.1|	-	4.5e-08	32.6	12.9	0.0006	19.5	1.3	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_2	PF12797.2	gi|257051788|ref|YP_003129621.1|	-	1.2e-07	31.2	10.1	0.00033	20.3	1.0	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_4	PF12800.2	gi|257051788|ref|YP_003129621.1|	-	4.8e-07	29.5	9.3	0.0014	18.7	1.3	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_17	PF13534.1	gi|257051788|ref|YP_003129621.1|	-	1.7e-05	25.0	12.3	0.0034	17.6	1.2	2.2	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|257051788|ref|YP_003129621.1|	-	7.2e-05	23.1	12.7	0.02	15.2	1.6	2.3	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_3	PF12798.2	gi|257051788|ref|YP_003129621.1|	-	0.00015	22.0	14.2	0.0036	17.7	2.3	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_15	PF13459.1	gi|257051788|ref|YP_003129621.1|	-	0.0003	21.3	4.9	0.28	11.7	0.5	2.5	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.1	gi|257051788|ref|YP_003129621.1|	-	0.0059	16.9	9.6	0.32	11.4	0.6	2.6	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain
c-SKI_SMAD_bind	PF08782.5	gi|257051788|ref|YP_003129621.1|	-	2.1	8.5	7.0	1.9	8.6	0.6	2.2	1	1	1	2	2	2	0	c-SKI	Smad4	binding	domain
NADHdh	PF00146.16	gi|257051789|ref|YP_003129622.1|	-	7.8e-85	284.6	10.9	9.8e-85	284.3	7.6	1.0	1	0	0	1	1	1	1	NADH	dehydrogenase
Complex1_49kDa	PF00346.14	gi|257051790|ref|YP_003129623.1|	-	2e-65	220.5	0.1	5.7e-42	143.5	0.0	2.1	1	1	1	2	2	2	2	Respiratory-chain	NADH	dehydrogenase,	49	Kd	subunit
Complex1_30kDa	PF00329.14	gi|257051790|ref|YP_003129623.1|	-	2.5e-28	98.3	0.1	4.5e-28	97.5	0.0	1.5	1	0	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	30	Kd	subunit
TPR_12	PF13424.1	gi|257051790|ref|YP_003129623.1|	-	0.12	12.3	0.0	0.45	10.4	0.0	2.0	1	0	0	1	1	1	0	Tetratricopeptide	repeat
Oxidored_q6	PF01058.17	gi|257051791|ref|YP_003129624.1|	-	6.4e-21	74.3	0.1	9.3e-21	73.8	0.1	1.2	1	0	0	1	1	1	1	NADH	ubiquinone	oxidoreductase,	20	Kd	subunit
Oxidored_q4	PF00507.14	gi|257051792|ref|YP_003129625.1|	-	1.2e-26	92.5	0.0	1.5e-26	92.1	0.0	1.1	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase,	chain	3
TrbC	PF04956.8	gi|257051792|ref|YP_003129625.1|	-	1.7	8.7	7.8	0.48	10.4	1.0	2.3	2	0	0	2	2	2	0	TrbC/VIRB2	family
AIRC	PF00731.15	gi|257051793|ref|YP_003129626.1|	-	7.3e-50	168.1	0.0	1e-49	167.6	0.0	1.2	1	0	0	1	1	1	1	AIR	carboxylase
ATP-grasp	PF02222.17	gi|257051794|ref|YP_003129627.1|	-	2.3e-48	163.8	0.0	3.6e-48	163.1	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_4	PF13535.1	gi|257051794|ref|YP_003129627.1|	-	8.2e-22	77.8	0.0	1.4e-21	77.0	0.0	1.4	1	0	0	1	1	1	1	ATP-grasp	domain
2-Hacid_dh_C	PF02826.14	gi|257051794|ref|YP_003129627.1|	-	1.7e-06	27.3	0.0	2.8e-06	26.6	0.0	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
ATPgrasp_Ter	PF15632.1	gi|257051794|ref|YP_003129627.1|	-	4.2e-06	25.7	0.0	7.4e-06	24.9	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
Dala_Dala_lig_C	PF07478.8	gi|257051794|ref|YP_003129627.1|	-	0.0039	16.6	0.0	0.037	13.3	0.0	2.1	1	1	0	1	1	1	1	D-ala	D-ala	ligase	C-terminus
CPSase_L_D2	PF02786.12	gi|257051794|ref|YP_003129627.1|	-	0.0051	16.1	0.0	0.0083	15.4	0.0	1.3	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATP-grasp_5	PF13549.1	gi|257051794|ref|YP_003129627.1|	-	0.0064	15.7	0.0	0.014	14.6	0.0	1.5	1	1	0	1	1	1	1	ATP-grasp	domain
3HCDH_N	PF02737.13	gi|257051794|ref|YP_003129627.1|	-	0.0066	16.1	0.0	0.01	15.4	0.0	1.3	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
XdhC_C	PF13478.1	gi|257051794|ref|YP_003129627.1|	-	0.026	14.8	0.0	0.049	13.9	0.0	1.5	1	0	0	1	1	1	0	XdhC	Rossmann	domain
ATP-grasp_3	PF02655.9	gi|257051794|ref|YP_003129627.1|	-	0.044	13.6	0.0	0.3	10.9	0.0	2.1	1	1	0	1	1	1	0	ATP-grasp	domain
NAD_binding_10	PF13460.1	gi|257051794|ref|YP_003129627.1|	-	0.091	12.7	0.2	0.2	11.6	0.2	1.6	1	0	0	1	1	1	0	NADH(P)-binding
TrkA_N	PF02254.13	gi|257051794|ref|YP_003129627.1|	-	0.12	12.3	0.0	0.25	11.3	0.0	1.5	1	0	0	1	1	1	0	TrkA-N	domain
NAD_binding_2	PF03446.10	gi|257051794|ref|YP_003129627.1|	-	0.13	12.0	0.0	0.29	10.9	0.0	1.5	1	0	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
PMT_2	PF13231.1	gi|257051795|ref|YP_003129628.1|	-	6.2e-11	42.4	3.9	6.2e-11	42.4	2.7	3.2	4	0	0	4	4	4	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
Aminotran_1_2	PF00155.16	gi|257051796|ref|YP_003129629.1|	-	2.2e-67	227.5	0.0	2.5e-67	227.3	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Beta_elim_lyase	PF01212.16	gi|257051796|ref|YP_003129629.1|	-	2.1e-08	33.6	0.0	4.3e-07	29.3	0.0	2.0	2	0	0	2	2	2	1	Beta-eliminating	lyase
Cys_Met_Meta_PP	PF01053.15	gi|257051796|ref|YP_003129629.1|	-	8.3e-05	21.0	0.0	0.00013	20.3	0.0	1.2	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
DUF3856	PF12968.2	gi|257051796|ref|YP_003129629.1|	-	0.051	13.4	0.1	0.1	12.4	0.0	1.4	1	0	0	1	1	1	0	Domain	of	Unknown	Function	(DUF3856)
DinB_2	PF12867.2	gi|257051796|ref|YP_003129629.1|	-	0.082	13.2	1.4	13	6.1	0.0	2.7	2	1	0	3	3	3	0	DinB	superfamily
Flp_Fap	PF04964.9	gi|257051799|ref|YP_003129632.1|	-	0.17	11.4	0.3	0.17	11.4	0.2	3.1	3	0	0	3	3	3	0	Flp/Fap	pilin	component
DUF2834	PF11196.3	gi|257051799|ref|YP_003129632.1|	-	5.2	7.2	8.0	14	5.9	4.5	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2834)
CTP_transf_2	PF01467.21	gi|257051800|ref|YP_003129633.1|	-	6.4e-13	49.0	0.1	7.2e-13	48.8	0.1	1.3	1	1	0	1	1	1	1	Cytidylyltransferase
Prok-JAB	PF14464.1	gi|257051801|ref|YP_003129634.1|	-	1.6e-14	53.3	0.1	2.1e-14	52.9	0.1	1.2	1	0	0	1	1	1	1	Prokaryotic	homologs	of	the	JAB	domain
RadC	PF04002.10	gi|257051801|ref|YP_003129634.1|	-	0.0017	18.0	0.0	0.0026	17.4	0.0	1.2	1	0	0	1	1	1	1	RadC-like	JAB	domain
JAB	PF01398.16	gi|257051801|ref|YP_003129634.1|	-	0.021	14.5	0.0	0.063	13.0	0.0	1.7	1	1	0	1	1	1	0	JAB1/Mov34/MPN/PAD-1	ubiquitin	protease
Toxin-JAB1	PF15659.1	gi|257051801|ref|YP_003129634.1|	-	0.055	13.3	0.0	0.076	12.8	0.0	1.2	1	0	0	1	1	1	0	JAB-like	toxin	1
tRNA_anti-codon	PF01336.20	gi|257051802|ref|YP_003129635.1|	-	1e-11	44.5	0.2	1.9e-11	43.6	0.2	1.5	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
DHH	PF01368.15	gi|257051802|ref|YP_003129635.1|	-	2.5e-10	40.1	0.1	4.9e-10	39.2	0.1	1.4	1	0	0	1	1	1	1	DHH	family
S1	PF00575.18	gi|257051802|ref|YP_003129635.1|	-	1.2e-05	25.3	0.2	3.4e-05	23.8	0.1	1.8	1	0	0	1	1	1	1	S1	RNA	binding	domain
Rep_fac-A_3	PF08661.6	gi|257051802|ref|YP_003129635.1|	-	0.0078	16.0	0.0	0.016	15.1	0.0	1.5	1	0	0	1	1	1	1	Replication	factor	A	protein	3
DUF1688	PF07958.6	gi|257051802|ref|YP_003129635.1|	-	0.15	10.5	0.1	0.26	9.7	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1688)
PLDc_2	PF13091.1	gi|257051803|ref|YP_003129636.1|	-	2.6e-34	117.6	0.0	1.1e-17	63.9	0.0	2.1	2	0	0	2	2	2	2	PLD-like	domain
PLDc	PF00614.17	gi|257051803|ref|YP_003129636.1|	-	1.3e-08	34.3	2.1	5.4e-06	26.0	0.5	2.7	2	0	0	2	2	2	2	Phospholipase	D	Active	site	motif
LTD	PF00932.14	gi|257051803|ref|YP_003129636.1|	-	0.00018	21.5	2.0	0.00022	21.2	0.4	2.0	2	0	0	2	2	2	1	Lamin	Tail	Domain
DUF1669	PF07894.7	gi|257051803|ref|YP_003129636.1|	-	0.0028	16.9	0.0	0.0055	15.9	0.0	1.5	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1669)
Regulator_TrmB	PF11495.3	gi|257051803|ref|YP_003129636.1|	-	0.0032	16.4	0.0	1.7	7.5	0.0	2.6	2	1	0	2	2	2	2	Archaeal	transcriptional	regulator	TrmB
Glyco_trans_4_4	PF13579.1	gi|257051803|ref|YP_003129636.1|	-	0.3	11.1	17.7	4.8	7.3	1.7	3.9	3	1	0	3	3	3	0	Glycosyl	transferase	4-like	domain
HEAT_2	PF13646.1	gi|257051804|ref|YP_003129637.1|	-	2.5e-21	75.7	16.5	1e-10	41.7	0.1	4.5	2	2	2	4	4	4	2	HEAT	repeats
HEAT_PBS	PF03130.11	gi|257051804|ref|YP_003129637.1|	-	1.6e-15	55.9	13.9	3.2e-05	23.9	0.3	5.9	6	1	0	6	6	6	4	PBS	lyase	HEAT-like	repeat
HEAT	PF02985.17	gi|257051804|ref|YP_003129637.1|	-	5.5e-06	26.0	5.7	0.011	15.6	0.1	4.2	4	0	0	4	4	4	2	HEAT	repeat
HEAT_EZ	PF13513.1	gi|257051804|ref|YP_003129637.1|	-	3.3e-05	24.2	22.7	0.0011	19.4	1.1	5.2	3	2	2	5	5	5	2	HEAT-like	repeat
Arm	PF00514.18	gi|257051804|ref|YP_003129637.1|	-	0.0008	19.1	0.3	3.6	7.5	0.0	3.5	1	1	2	3	3	3	2	Armadillo/beta-catenin-like	repeat
Adaptin_N	PF01602.15	gi|257051804|ref|YP_003129637.1|	-	0.16	10.2	0.0	0.27	9.4	0.0	1.5	1	0	0	1	1	1	0	Adaptin	N	terminal	region
CDP-OH_P_transf	PF01066.16	gi|257051805|ref|YP_003129638.1|	-	7e-09	35.9	14.5	7e-09	35.9	10.0	2.5	2	1	0	2	2	2	1	CDP-alcohol	phosphatidyltransferase
Copper-bind	PF00127.15	gi|257051806|ref|YP_003129639.1|	-	3.1e-13	49.7	0.0	5.8e-13	48.9	0.0	1.4	1	1	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.1	gi|257051806|ref|YP_003129639.1|	-	4.4e-05	23.3	0.0	0.08	12.8	0.0	2.1	2	0	0	2	2	2	2	Cupredoxin-like	domain
PKD	PF00801.15	gi|257051806|ref|YP_003129639.1|	-	0.0023	17.6	0.4	0.0051	16.5	0.3	1.6	1	1	0	1	1	1	1	PKD	domain
Ribosomal_S3Ae	PF01015.13	gi|257051807|ref|YP_003129640.1|	-	7e-70	234.3	0.2	8.4e-70	234.0	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	S3Ae	family
ERCC4	PF02732.10	gi|257051807|ref|YP_003129640.1|	-	0.059	13.1	0.1	0.089	12.5	0.1	1.3	1	0	0	1	1	1	0	ERCC4	domain
DUF1014	PF06244.7	gi|257051808|ref|YP_003129641.1|	-	0.0092	16.1	1.3	0.011	15.9	0.9	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1014)
LytR_C	PF13399.1	gi|257051808|ref|YP_003129641.1|	-	0.025	14.9	1.9	0.3	11.4	0.9	2.0	1	1	1	2	2	2	0	LytR	cell	envelope-related	transcriptional	attenuator
OSCP	PF00213.13	gi|257051808|ref|YP_003129641.1|	-	0.05	13.4	0.0	0.058	13.2	0.0	1.1	1	0	0	1	1	1	0	ATP	synthase	delta	(OSCP)	subunit
Pcc1	PF09341.5	gi|257051808|ref|YP_003129641.1|	-	0.2	11.7	0.9	0.31	11.1	0.6	1.3	1	1	0	1	1	1	0	Transcription	factor	Pcc1
Ribosomal_S15	PF00312.17	gi|257051810|ref|YP_003129643.1|	-	2.3e-23	81.7	0.1	3.3e-23	81.2	0.1	1.3	1	0	0	1	1	1	1	Ribosomal	protein	S15
Ribosomal_S13_N	PF08069.7	gi|257051810|ref|YP_003129643.1|	-	1.4e-20	72.9	0.0	2.1e-20	72.2	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	S13/S15	N-terminal	domain
Pex19	PF04614.7	gi|257051810|ref|YP_003129643.1|	-	0.19	11.2	1.5	6.5	6.2	0.1	2.0	1	1	1	2	2	2	0	Pex19	protein	family
cwf21	PF08312.7	gi|257051810|ref|YP_003129643.1|	-	2.1	8.2	6.2	21	5.0	0.7	2.8	1	1	1	2	2	2	0	cwf21	domain
DUF963	PF06131.6	gi|257051813|ref|YP_003129646.1|	-	0.08	12.2	1.9	0.17	11.1	1.3	1.6	1	0	0	1	1	1	0	Schizosaccharomyces	pombe	repeat	of	unknown	function	(DUF963)
DUF3357	PF11837.3	gi|257051815|ref|YP_003129648.1|	-	0.063	13.1	0.1	0.11	12.3	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3357)
Asn_synthase	PF00733.16	gi|257051817|ref|YP_003129650.1|	-	1.5e-36	126.1	0.8	2.6e-36	125.4	0.5	1.3	1	0	0	1	1	1	1	Asparagine	synthase
DUF1441	PF07278.6	gi|257051817|ref|YP_003129650.1|	-	0.058	13.0	0.1	0.15	11.7	0.0	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1441)
PHP_C	PF13263.1	gi|257051818|ref|YP_003129651.1|	-	9.6e-24	82.6	0.3	5.4e-23	80.2	0.2	2.0	2	0	0	2	2	2	1	PHP-associated
PHP	PF02811.14	gi|257051818|ref|YP_003129651.1|	-	4.2e-19	69.0	0.0	7.4e-19	68.1	0.0	1.5	1	1	0	1	1	1	1	PHP	domain
Radical_SAM	PF04055.16	gi|257051819|ref|YP_003129652.1|	-	3.7e-17	62.9	0.2	1.2e-16	61.3	0.1	1.9	1	1	1	2	2	2	1	Radical	SAM	superfamily
Fer4_12	PF13353.1	gi|257051819|ref|YP_003129652.1|	-	4.3e-06	26.8	0.0	1e-05	25.6	0.0	1.6	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.1	gi|257051819|ref|YP_003129652.1|	-	0.00019	21.4	0.0	0.0011	19.0	0.0	2.1	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
OmpA	PF00691.15	gi|257051819|ref|YP_003129652.1|	-	0.076	13.4	0.0	0.25	11.7	0.0	1.9	2	0	0	2	2	2	0	OmpA	family
PaaB	PF06243.6	gi|257051820|ref|YP_003129653.1|	-	5.6e-12	45.6	0.0	6.8e-12	45.3	0.0	1.1	1	0	0	1	1	1	1	Phenylacetic	acid	degradation	B
HTH_20	PF12840.2	gi|257051821|ref|YP_003129654.1|	-	2e-11	43.4	0.2	4.6e-11	42.3	0.1	1.6	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|257051821|ref|YP_003129654.1|	-	7.9e-06	25.3	0.0	1.8e-05	24.2	0.0	1.6	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
TrmB	PF01978.14	gi|257051821|ref|YP_003129654.1|	-	0.006	16.2	0.0	0.01	15.4	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.1	gi|257051821|ref|YP_003129654.1|	-	0.028	14.7	0.1	0.056	13.7	0.1	1.6	1	1	1	2	2	2	0	Winged	helix	DNA-binding	domain
DUF742	PF05331.6	gi|257051821|ref|YP_003129654.1|	-	0.029	13.9	0.1	0.04	13.5	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF742)
HTH_7	PF02796.10	gi|257051821|ref|YP_003129654.1|	-	0.047	13.5	0.0	0.13	12.1	0.0	1.7	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	resolvase
FUR	PF01475.14	gi|257051821|ref|YP_003129654.1|	-	0.058	13.3	0.0	0.064	13.1	0.0	1.3	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
Rib	PF08428.5	gi|257051821|ref|YP_003129654.1|	-	0.074	12.8	0.0	0.1	12.3	0.0	1.3	1	0	0	1	1	1	0	Rib/alpha-like	repeat
HTH_5	PF01022.15	gi|257051821|ref|YP_003129654.1|	-	0.13	11.9	0.0	0.21	11.2	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
DUF981	PF06168.6	gi|257051822|ref|YP_003129655.1|	-	0.16	11.7	6.0	0.21	11.3	4.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF981)
DUF3318	PF11780.3	gi|257051822|ref|YP_003129655.1|	-	0.66	9.5	2.7	1.4	8.5	0.1	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3318)
COX14	PF14880.1	gi|257051822|ref|YP_003129655.1|	-	1.1	8.9	5.5	0.48	10.0	0.1	2.2	2	0	0	2	2	2	0	Cytochrome	oxidase	c	assembly
Copper-bind	PF00127.15	gi|257051824|ref|YP_003129657.1|	-	1.6e-13	50.7	0.0	5.5e-13	48.9	0.0	1.8	1	1	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.1	gi|257051824|ref|YP_003129657.1|	-	0.0058	16.5	0.0	0.0086	15.9	0.0	1.3	1	0	0	1	1	1	1	Cupredoxin-like	domain
ARGLU	PF15346.1	gi|257051825|ref|YP_003129658.1|	-	0.016	14.9	22.9	0.025	14.3	6.4	2.1	1	1	1	2	2	2	0	Arginine	and	glutamate-rich	1
SH3_4	PF06347.8	gi|257051825|ref|YP_003129658.1|	-	1.1	8.8	3.1	10	5.7	0.1	2.9	1	1	2	3	3	3	0	Bacterial	SH3	domain
DUF445	PF04286.7	gi|257051825|ref|YP_003129658.1|	-	2.3	7.6	6.4	6.2	6.2	4.4	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF445)
BTV_NS2	PF04514.7	gi|257051825|ref|YP_003129658.1|	-	3.4	6.4	9.6	4.3	6.1	6.6	1.1	1	0	0	1	1	1	0	Bluetongue	virus	non-structural	protein	NS2
DUF3007	PF11460.3	gi|257051825|ref|YP_003129658.1|	-	4.4	7.4	6.1	1.1	9.3	0.4	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3007)
EnY2	PF10163.4	gi|257051825|ref|YP_003129658.1|	-	7.7	6.5	7.4	2.6e+02	1.6	5.1	2.4	1	1	0	1	1	1	0	Transcription	factor	e(y)2
Peptidase_M29	PF02073.10	gi|257051826|ref|YP_003129659.1|	-	5.1e-110	367.9	0.2	5.8e-110	367.7	0.2	1.0	1	0	0	1	1	1	1	Thermophilic	metalloprotease	(M29)
Plasmid_stabil	PF05016.9	gi|257051827|ref|YP_003129660.1|	-	0.00029	21.1	0.1	0.00053	20.3	0.0	1.4	1	1	0	1	1	1	1	Plasmid	stabilisation	system	protein
RHH_1	PF01402.16	gi|257051828|ref|YP_003129661.1|	-	0.0042	16.9	0.0	0.0074	16.1	0.0	1.4	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
p450	PF00067.17	gi|257051829|ref|YP_003129662.1|	-	5.9e-83	278.9	0.0	7.2e-83	278.6	0.0	1.0	1	0	0	1	1	1	1	Cytochrome	P450
HTH_10	PF04967.7	gi|257051830|ref|YP_003129663.1|	-	1.9e-15	56.1	0.1	3e-15	55.5	0.0	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
LacI	PF00356.16	gi|257051830|ref|YP_003129663.1|	-	0.012	15.2	1.4	0.012	15.2	1.0	2.0	3	0	0	3	3	3	0	Bacterial	regulatory	proteins,	lacI	family
HTH_23	PF13384.1	gi|257051830|ref|YP_003129663.1|	-	0.024	14.3	0.0	0.047	13.3	0.0	1.5	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_31	PF13560.1	gi|257051830|ref|YP_003129663.1|	-	0.048	13.8	0.8	0.12	12.5	0.5	1.8	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|257051830|ref|YP_003129663.1|	-	0.092	12.3	0.1	0.21	11.2	0.1	1.6	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
NHR2	PF08788.6	gi|257051830|ref|YP_003129663.1|	-	5.9	6.4	5.6	22	4.5	0.1	2.7	3	0	0	3	3	3	0	NHR2	domain	like
ILVD_EDD	PF00920.16	gi|257051831|ref|YP_003129664.1|	-	2.1e-206	686.3	0.1	2.4e-206	686.1	0.1	1.0	1	0	0	1	1	1	1	Dehydratase	family
MatE	PF01554.13	gi|257051832|ref|YP_003129665.1|	-	1.2e-56	190.8	34.2	6.4e-32	110.4	8.2	2.4	2	0	0	2	2	2	2	MatE
Polysacc_synt_C	PF14667.1	gi|257051832|ref|YP_003129665.1|	-	6.5e-06	26.0	15.1	6.5e-06	26.0	10.5	4.5	3	2	0	3	3	3	2	Polysaccharide	biosynthesis	C-terminal	domain
TetR_C_6	PF13977.1	gi|257051833|ref|YP_003129666.1|	-	7.6e-18	64.6	1.5	7.6e-18	64.6	1.1	1.7	2	1	1	3	3	3	1	Bacterial	transcriptional	repressor
TetR_N	PF00440.18	gi|257051833|ref|YP_003129666.1|	-	2.1e-09	36.8	0.6	3.9e-09	36.0	0.4	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
WHG	PF13305.1	gi|257051833|ref|YP_003129666.1|	-	0.17	12.4	0.7	2.7	8.6	0.1	2.7	2	1	1	3	3	3	0	WHG	domain
GNAT_acetyltr_2	PF13718.1	gi|257051834|ref|YP_003129667.1|	-	5.6e-51	172.6	0.1	3.5e-50	170.0	0.1	2.0	1	1	0	1	1	1	1	GNAT	acetyltransferase	2
Helicase_RecD	PF05127.9	gi|257051834|ref|YP_003129667.1|	-	4.6e-48	163.1	0.0	1.1e-47	161.9	0.0	1.7	2	0	0	2	2	2	1	Helicase
DUF1726	PF08351.6	gi|257051834|ref|YP_003129667.1|	-	1.7e-23	82.1	0.0	7e-23	80.1	0.0	2.0	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1726)
tRNA_bind_2	PF13725.1	gi|257051834|ref|YP_003129667.1|	-	3.8e-10	39.7	0.0	1e-09	38.3	0.0	1.7	1	0	0	1	1	1	1	Possible	tRNA	binding	domain
Acetyltransf_7	PF13508.1	gi|257051834|ref|YP_003129667.1|	-	4.8e-06	26.6	0.0	1.3e-05	25.3	0.0	1.8	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
AAA_30	PF13604.1	gi|257051834|ref|YP_003129667.1|	-	5.7e-06	26.0	1.7	5.7e-06	26.0	1.2	2.1	2	0	0	2	2	2	1	AAA	domain
Acetyltransf_10	PF13673.1	gi|257051834|ref|YP_003129667.1|	-	0.0011	19.0	0.0	0.051	13.6	0.0	2.8	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Ribosomal_L7Ae	PF01248.21	gi|257051835|ref|YP_003129668.1|	-	1.9e-26	91.3	0.0	2.4e-26	91.0	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L7Ae/L30e/S12e/Gadd45	family
PELOTA_1	PF15608.1	gi|257051835|ref|YP_003129668.1|	-	0.00097	18.8	0.0	0.0013	18.4	0.0	1.2	1	0	0	1	1	1	1	PELOTA	RNA	binding	domain
eRF1_3	PF03465.10	gi|257051835|ref|YP_003129668.1|	-	0.02	15.1	0.1	0.02	15.1	0.1	1.2	1	0	0	1	1	1	0	eRF1	domain	3
DUF1269	PF06897.7	gi|257051835|ref|YP_003129668.1|	-	0.36	10.8	3.9	1.5	8.8	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1269)
Ribosomal_S28e	PF01200.13	gi|257051836|ref|YP_003129669.1|	-	1.4e-27	95.2	2.0	1.5e-27	95.0	1.4	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S28e
Ribosomal_L24e	PF01246.15	gi|257051837|ref|YP_003129670.1|	-	7.6e-25	86.5	0.1	1.2e-24	85.9	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L24e
zf-FCS	PF06467.9	gi|257051837|ref|YP_003129670.1|	-	0.0012	18.4	1.3	0.0018	17.8	0.9	1.2	1	0	0	1	1	1	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
YHS	PF04945.8	gi|257051837|ref|YP_003129670.1|	-	0.0061	16.3	0.2	0.01	15.6	0.1	1.3	1	0	0	1	1	1	1	YHS	domain
Arc_trans_TRASH	PF08394.5	gi|257051837|ref|YP_003129670.1|	-	0.048	13.8	1.0	0.085	13.0	0.7	1.4	1	1	0	1	1	1	0	Archaeal	TRASH	domain
Meleagrin	PF08189.6	gi|257051837|ref|YP_003129670.1|	-	0.066	12.7	0.0	0.11	11.9	0.0	1.3	1	0	0	1	1	1	0	Meleagrin/Cygnin	family
DUF1510	PF07423.6	gi|257051837|ref|YP_003129670.1|	-	0.22	10.8	20.8	0.24	10.7	14.4	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1510)
NOA36	PF06524.7	gi|257051837|ref|YP_003129670.1|	-	0.29	10.3	16.9	0.39	9.9	11.7	1.3	1	0	0	1	1	1	0	NOA36	protein
Daxx	PF03344.10	gi|257051837|ref|YP_003129670.1|	-	1.4	7.2	26.9	1.6	7.1	18.6	1.0	1	0	0	1	1	1	0	Daxx	Family
CENP-T	PF15511.1	gi|257051837|ref|YP_003129670.1|	-	1.6	7.8	18.4	1.6	7.8	12.7	1.0	1	0	0	1	1	1	0	Centromere	kinetochore	component	CENP-T
Cwf_Cwc_15	PF04889.7	gi|257051837|ref|YP_003129670.1|	-	1.7	8.2	15.5	2	8.0	10.8	1.2	1	0	0	1	1	1	0	Cwf15/Cwc15	cell	cycle	control	protein
DUF329	PF03884.9	gi|257051837|ref|YP_003129670.1|	-	3.9	7.1	7.2	21	4.7	5.0	2.7	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF329)
NDK	PF00334.14	gi|257051838|ref|YP_003129671.1|	-	5.8e-56	188.0	0.0	6.8e-56	187.7	0.0	1.0	1	0	0	1	1	1	1	Nucleoside	diphosphate	kinase
Usp	PF00582.21	gi|257051839|ref|YP_003129672.1|	-	5.8e-37	126.9	0.6	6.7e-37	126.7	0.4	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
Amidohydro_1	PF01979.15	gi|257051840|ref|YP_003129673.1|	-	4.9e-28	98.7	0.2	2.2e-18	67.0	0.0	2.1	1	1	1	2	2	2	2	Amidohydrolase	family
Amidohydro_4	PF13147.1	gi|257051840|ref|YP_003129673.1|	-	1.4e-09	38.4	10.9	1.5e-08	35.0	7.6	2.7	1	1	0	1	1	1	1	Amidohydrolase
Amidohydro_5	PF13594.1	gi|257051840|ref|YP_003129673.1|	-	7.7e-08	32.0	0.0	1.6e-07	31.0	0.0	1.6	1	0	0	1	1	1	1	Amidohydrolase
A_deaminase	PF00962.17	gi|257051840|ref|YP_003129673.1|	-	0.00055	18.9	0.0	0.0008	18.4	0.0	1.2	1	0	0	1	1	1	1	Adenosine/AMP	deaminase
Amidohydro_3	PF07969.6	gi|257051840|ref|YP_003129673.1|	-	0.021	14.0	6.8	0.46	9.6	0.6	2.9	1	1	1	2	2	2	0	Amidohydrolase	family
Cyt_c_ox_IV	PF12270.3	gi|257051842|ref|YP_003129675.1|	-	0.0081	15.9	0.9	0.02	14.6	0.6	1.6	1	1	0	1	1	1	1	Cytochrome	c	oxidase	subunit	IV
CopD	PF05425.8	gi|257051842|ref|YP_003129675.1|	-	0.0084	16.3	4.8	0.018	15.2	3.3	1.6	1	1	0	1	1	1	1	Copper	resistance	protein	D
DUF2628	PF10947.3	gi|257051842|ref|YP_003129675.1|	-	0.028	14.2	2.5	0.028	14.2	1.8	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2628)
DUF2178	PF09946.4	gi|257051842|ref|YP_003129675.1|	-	0.11	12.2	0.1	0.2	11.4	0.0	1.5	1	1	0	1	1	1	0	Predicted	membrane	protein	(DUF2178)
DUF2157	PF09925.4	gi|257051842|ref|YP_003129675.1|	-	0.21	11.1	2.3	0.64	9.6	1.6	1.7	1	1	0	1	1	1	0	Predicted	membrane	protein	(DUF2157)
DUF4235	PF14019.1	gi|257051842|ref|YP_003129675.1|	-	0.54	10.1	0.0	0.54	10.1	0.0	2.4	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF4235)
DUF2892	PF11127.3	gi|257051842|ref|YP_003129675.1|	-	8.6	6.2	12.8	1	9.2	1.0	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2892)
DUF2178	PF09946.4	gi|257051843|ref|YP_003129676.1|	-	0.0041	16.8	0.9	0.013	15.2	0.6	1.8	1	1	0	1	1	1	1	Predicted	membrane	protein	(DUF2178)
TctB	PF07331.6	gi|257051843|ref|YP_003129676.1|	-	0.0084	15.7	5.2	0.011	15.3	3.6	1.1	1	0	0	1	1	1	1	Tripartite	tricarboxylate	transporter	TctB	family
DUF1097	PF06496.6	gi|257051843|ref|YP_003129676.1|	-	0.12	12.1	0.2	0.12	12.1	0.2	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1097)
DUF3796	PF12676.2	gi|257051843|ref|YP_003129676.1|	-	0.17	12.0	0.0	0.17	12.0	0.0	1.8	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF3796)
DUF2628	PF10947.3	gi|257051843|ref|YP_003129676.1|	-	0.18	11.6	6.0	1.3	8.8	0.5	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2628)
DUF1129	PF06570.6	gi|257051843|ref|YP_003129676.1|	-	0.27	10.5	3.5	0.17	11.2	0.1	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1129)
UPF0104	PF03706.8	gi|257051843|ref|YP_003129676.1|	-	0.28	10.4	7.7	0.8	8.9	5.3	1.6	1	1	0	1	1	1	0	Uncharacterised	protein	family	(UPF0104)
DUF95	PF01944.12	gi|257051843|ref|YP_003129676.1|	-	3.8	7.1	8.0	48	3.5	4.0	2.8	2	1	0	2	2	2	0	Integral	membrane	protein	DUF95
CD20	PF04103.10	gi|257051843|ref|YP_003129676.1|	-	4.3	7.2	10.6	2.2	8.2	1.4	2.2	1	1	1	2	2	2	0	CD20-like	family
HTH_3	PF01381.17	gi|257051844|ref|YP_003129677.1|	-	3.2e-15	55.6	0.0	3.6e-15	55.5	0.0	1.1	1	0	0	1	1	1	1	Helix-turn-helix
HTH_26	PF13443.1	gi|257051844|ref|YP_003129677.1|	-	8.5e-10	38.6	0.0	9.7e-10	38.5	0.0	1.0	1	0	0	1	1	1	1	Cro/C1-type	HTH	DNA-binding	domain
HTH_31	PF13560.1	gi|257051844|ref|YP_003129677.1|	-	1.6e-08	34.5	0.0	1.9e-08	34.3	0.0	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_19	PF12844.2	gi|257051844|ref|YP_003129677.1|	-	6.5e-08	32.5	0.0	7.3e-08	32.3	0.0	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|257051844|ref|YP_003129677.1|	-	0.00024	20.4	0.0	0.00036	19.8	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.7	gi|257051844|ref|YP_003129677.1|	-	0.0003	20.3	0.0	0.00054	19.5	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
HTH_Crp_2	PF13545.1	gi|257051844|ref|YP_003129677.1|	-	0.0012	18.6	0.0	0.0016	18.1	0.0	1.3	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
Sigma70_r4	PF04545.11	gi|257051844|ref|YP_003129677.1|	-	0.0022	17.2	0.0	0.0034	16.6	0.0	1.3	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_25	PF13413.1	gi|257051844|ref|YP_003129677.1|	-	0.0059	16.2	0.1	0.007	15.9	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|257051844|ref|YP_003129677.1|	-	0.0076	15.9	0.0	0.013	15.1	0.0	1.3	1	0	0	1	1	1	1	MarR	family
DUF1323	PF07037.6	gi|257051844|ref|YP_003129677.1|	-	0.012	15.8	0.0	0.016	15.4	0.0	1.1	1	0	0	1	1	1	0	Putative	transcription	regulator	(DUF1323)
HTH_23	PF13384.1	gi|257051844|ref|YP_003129677.1|	-	0.017	14.7	0.0	0.026	14.1	0.0	1.3	1	0	0	1	1	1	0	Homeodomain-like	domain
GntR	PF00392.16	gi|257051844|ref|YP_003129677.1|	-	0.018	14.4	0.0	0.025	14.0	0.0	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
MerR	PF00376.18	gi|257051844|ref|YP_003129677.1|	-	0.023	14.2	0.0	0.033	13.7	0.0	1.2	1	0	0	1	1	1	0	MerR	family	regulatory	protein
HTH_AsnC-type	PF13404.1	gi|257051844|ref|YP_003129677.1|	-	0.03	13.8	0.0	0.046	13.2	0.0	1.4	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
HTH_38	PF13936.1	gi|257051844|ref|YP_003129677.1|	-	0.049	13.2	0.0	0.076	12.5	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_37	PF13744.1	gi|257051844|ref|YP_003129677.1|	-	0.097	12.4	0.0	0.11	12.3	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_7	PF02796.10	gi|257051844|ref|YP_003129677.1|	-	0.11	12.3	0.0	0.33	10.8	0.0	1.7	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	resolvase
Crp	PF00325.15	gi|257051844|ref|YP_003129677.1|	-	0.14	11.6	0.0	0.23	10.9	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	crp	family
HD	PF01966.17	gi|257051845|ref|YP_003129678.1|	-	5.2e-11	42.6	2.1	1.5e-10	41.0	1.4	1.9	1	0	0	1	1	1	1	HD	domain
Clp_N	PF02861.15	gi|257051845|ref|YP_003129678.1|	-	0.0031	17.4	0.7	2.1	8.3	0.0	3.9	4	0	0	4	4	4	1	Clp	amino	terminal	domain
RHH_2	PF03693.9	gi|257051845|ref|YP_003129678.1|	-	0.088	12.9	3.3	0.98	9.6	0.1	2.4	2	0	0	2	2	2	0	Uncharacterised	protein	family	(UPF0156)
MCH	PF02289.11	gi|257051845|ref|YP_003129678.1|	-	0.14	11.1	0.0	0.22	10.5	0.0	1.2	1	0	0	1	1	1	0	Cyclohydrolase	(MCH)
DSPc	PF00782.15	gi|257051846|ref|YP_003129679.1|	-	0.0011	18.6	0.0	0.0014	18.2	0.0	1.2	1	0	0	1	1	1	1	Dual	specificity	phosphatase,	catalytic	domain
Y_phosphatase	PF00102.22	gi|257051846|ref|YP_003129679.1|	-	0.046	13.0	0.0	0.059	12.7	0.0	1.1	1	0	0	1	1	1	0	Protein-tyrosine	phosphatase
UPF0052	PF01933.13	gi|257051847|ref|YP_003129680.1|	-	2.1e-47	161.9	0.0	2.8e-47	161.4	0.0	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0052
Oxidored_nitro	PF00148.14	gi|257051847|ref|YP_003129680.1|	-	0.13	10.8	0.0	0.25	9.9	0.0	1.4	1	0	0	1	1	1	0	Nitrogenase	component	1	type	Oxidoreductase
Dus	PF01207.12	gi|257051848|ref|YP_003129681.1|	-	4.4e-12	45.4	2.5	3e-11	42.7	1.7	2.0	1	1	0	1	1	1	1	Dihydrouridine	synthase	(Dus)
His_biosynth	PF00977.16	gi|257051848|ref|YP_003129681.1|	-	2e-05	23.9	0.6	0.00011	21.5	0.2	2.0	1	1	1	2	2	2	2	Histidine	biosynthesis	protein
PEP_mutase	PF13714.1	gi|257051848|ref|YP_003129681.1|	-	0.00049	19.3	3.8	0.00064	19.0	2.6	1.2	1	0	0	1	1	1	1	Phosphoenolpyruvate	phosphomutase
NMO	PF03060.10	gi|257051848|ref|YP_003129681.1|	-	0.00086	18.5	3.1	0.0018	17.5	2.1	1.6	1	1	0	1	1	1	1	Nitronate	monooxygenase
FMN_dh	PF01070.13	gi|257051848|ref|YP_003129681.1|	-	0.0019	17.1	1.3	0.0035	16.2	0.2	1.8	1	1	1	2	2	2	1	FMN-dependent	dehydrogenase
QRPTase_C	PF01729.14	gi|257051848|ref|YP_003129681.1|	-	0.0062	16.0	0.4	0.0094	15.4	0.3	1.3	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
IGPS	PF00218.16	gi|257051848|ref|YP_003129681.1|	-	0.018	14.1	0.1	0.049	12.6	0.0	1.6	1	1	0	1	1	1	0	Indole-3-glycerol	phosphate	synthase
Radical_SAM	PF04055.16	gi|257051848|ref|YP_003129681.1|	-	0.032	14.4	0.1	0.44	10.6	0.1	2.6	1	1	0	1	1	1	0	Radical	SAM	superfamily
CitG	PF01874.11	gi|257051849|ref|YP_003129682.1|	-	7.1e-61	205.8	0.3	8.2e-61	205.6	0.2	1.0	1	0	0	1	1	1	1	ATP:dephospho-CoA	triphosphoribosyl	transferase
DUF447	PF04289.7	gi|257051850|ref|YP_003129683.1|	-	2.7e-38	131.2	0.1	3.1e-38	131.0	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF447)
Ribosomal_S17e	PF00833.13	gi|257051851|ref|YP_003129684.1|	-	4.9e-16	58.5	0.0	5.8e-16	58.3	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	S17
Semialdhyde_dh	PF01118.19	gi|257051853|ref|YP_003129686.1|	-	3.7e-33	114.4	0.0	8.1e-33	113.2	0.0	1.6	2	0	0	2	2	2	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
Semialdhyde_dhC	PF02774.13	gi|257051853|ref|YP_003129686.1|	-	2e-32	112.5	0.0	2.8e-32	112.0	0.0	1.2	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	dimerisation	domain
DapB_N	PF01113.15	gi|257051853|ref|YP_003129686.1|	-	0.00021	21.1	0.0	0.00049	19.9	0.0	1.7	1	1	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
DXP_reductoisom	PF02670.11	gi|257051853|ref|YP_003129686.1|	-	0.0012	19.3	0.0	0.0023	18.4	0.0	1.4	1	0	0	1	1	1	1	1-deoxy-D-xylulose	5-phosphate	reductoisomerase
Gp_dh_C	PF02800.15	gi|257051853|ref|YP_003129686.1|	-	0.007	15.8	0.0	0.19	11.2	0.0	2.2	2	0	0	2	2	2	1	Glyceraldehyde	3-phosphate	dehydrogenase,	C-terminal	domain
Subtilosin_A	PF11420.3	gi|257051853|ref|YP_003129686.1|	-	0.72	9.9	2.4	14	5.8	0.6	3.1	2	1	1	3	3	3	0	Bacteriocin	subtilosin	A
DUF3816	PF12822.2	gi|257051854|ref|YP_003129687.1|	-	0.52	10.1	3.1	0.72	9.7	2.2	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3816)
Bax1-I	PF01027.15	gi|257051855|ref|YP_003129688.1|	-	0.00015	21.4	0.9	0.00019	21.1	0.6	1.1	1	0	0	1	1	1	1	Inhibitor	of	apoptosis-promoting	Bax1
Frag1	PF10277.4	gi|257051855|ref|YP_003129688.1|	-	0.084	12.3	0.1	0.13	11.7	0.0	1.3	1	0	0	1	1	1	0	Frag1/DRAM/Sfk1	family
DUF2244	PF10003.4	gi|257051855|ref|YP_003129688.1|	-	6.1	6.2	9.3	1.1	8.6	1.4	2.2	1	1	1	2	2	2	0	Integral	membrane	protein	(DUF2244)
2-Hacid_dh_C	PF02826.14	gi|257051856|ref|YP_003129689.1|	-	6.2e-53	178.5	0.0	8.5e-53	178.1	0.0	1.2	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.25	gi|257051856|ref|YP_003129689.1|	-	4.3e-15	55.3	0.0	5.4e-15	55.0	0.0	1.0	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
TrkA_N	PF02254.13	gi|257051856|ref|YP_003129689.1|	-	0.0081	16.1	0.1	0.2	11.6	0.0	2.5	2	0	0	2	2	2	1	TrkA-N	domain
ThiF	PF00899.16	gi|257051856|ref|YP_003129689.1|	-	0.068	12.9	0.7	0.14	12.0	0.5	1.5	1	0	0	1	1	1	0	ThiF	family
ApbA	PF02558.11	gi|257051856|ref|YP_003129689.1|	-	0.073	12.5	0.1	0.3	10.5	0.1	1.9	2	0	0	2	2	2	0	Ketopantoate	reductase	PanE/ApbA
Metal_CEHH	PF14455.1	gi|257051856|ref|YP_003129689.1|	-	0.081	12.3	0.0	0.14	11.5	0.0	1.3	1	0	0	1	1	1	0	Predicted	metal	binding	domain
NAD_binding_2	PF03446.10	gi|257051856|ref|YP_003129689.1|	-	0.1	12.4	0.0	0.2	11.4	0.0	1.5	1	0	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
F420_oxidored	PF03807.12	gi|257051856|ref|YP_003129689.1|	-	0.12	12.8	0.2	0.36	11.2	0.0	1.9	2	0	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
Response_reg	PF00072.19	gi|257051857|ref|YP_003129690.1|	-	3e-14	52.9	0.1	4.7e-14	52.3	0.1	1.3	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HalX	PF08663.5	gi|257051857|ref|YP_003129690.1|	-	2.1e-07	30.8	0.2	5.5e-07	29.4	0.1	1.8	1	1	0	1	1	1	1	HalX	domain
Peptidase_C32	PF05411.7	gi|257051857|ref|YP_003129690.1|	-	0.16	11.6	0.0	0.21	11.2	0.0	1.3	1	0	0	1	1	1	0	Equine	arteritis	virus	putative	proteinase
DAO	PF01266.19	gi|257051858|ref|YP_003129691.1|	-	2.9e-14	52.7	3.1	6.6e-07	28.5	0.0	2.3	1	1	0	2	2	2	2	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.9	gi|257051858|ref|YP_003129691.1|	-	3.1e-08	33.7	2.6	6.7e-08	32.6	0.1	2.5	2	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.14	gi|257051858|ref|YP_003129691.1|	-	2e-07	30.4	3.6	3.5e-06	26.3	2.5	2.1	1	1	0	1	1	1	1	FAD	binding	domain
HI0933_like	PF03486.9	gi|257051858|ref|YP_003129691.1|	-	1.7e-06	26.8	2.1	0.0015	17.1	1.5	2.3	2	0	0	2	2	2	2	HI0933-like	protein
FAD_oxidored	PF12831.2	gi|257051858|ref|YP_003129691.1|	-	3.6e-06	26.3	5.6	2.8e-05	23.3	4.0	2.1	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.1	gi|257051858|ref|YP_003129691.1|	-	4e-05	23.5	0.7	0.00017	21.5	0.5	2.1	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Trp_halogenase	PF04820.9	gi|257051858|ref|YP_003129691.1|	-	7e-05	21.6	1.1	0.036	12.6	0.0	2.1	2	0	0	2	2	2	2	Tryptophan	halogenase
GIDA	PF01134.17	gi|257051858|ref|YP_003129691.1|	-	0.00016	20.6	0.5	0.00029	19.8	0.3	1.3	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
FAD_binding_2	PF00890.19	gi|257051858|ref|YP_003129691.1|	-	0.00019	20.4	1.9	0.00037	19.4	1.3	1.4	1	0	0	1	1	1	1	FAD	binding	domain
NAD_binding_9	PF13454.1	gi|257051858|ref|YP_003129691.1|	-	0.0037	17.0	1.1	0.56	9.9	0.0	2.8	2	1	1	3	3	3	1	FAD-NAD(P)-binding
Pyr_redox	PF00070.22	gi|257051858|ref|YP_003129691.1|	-	0.0051	17.1	0.3	0.26	11.7	0.4	2.6	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.12	gi|257051858|ref|YP_003129691.1|	-	0.0076	15.3	0.1	0.012	14.7	0.1	1.3	1	0	0	1	1	1	1	Thi4	family
Lycopene_cycl	PF05834.7	gi|257051858|ref|YP_003129691.1|	-	0.048	12.5	0.1	2.8	6.7	0.2	2.1	2	0	0	2	2	2	0	Lycopene	cyclase	protein
XdhC_C	PF13478.1	gi|257051858|ref|YP_003129691.1|	-	0.061	13.6	0.2	6.2	7.1	0.0	3.2	3	1	0	3	3	3	0	XdhC	Rossmann	domain
NAD_binding_7	PF13241.1	gi|257051858|ref|YP_003129691.1|	-	0.11	12.7	0.1	0.28	11.4	0.0	1.7	2	0	0	2	2	2	0	Putative	NAD(P)-binding
K_oxygenase	PF13434.1	gi|257051858|ref|YP_003129691.1|	-	0.19	10.6	0.2	1.1	8.1	0.0	2.2	3	0	0	3	3	3	0	L-lysine	6-monooxygenase	(NADPH-requiring)
3HCDH_N	PF02737.13	gi|257051858|ref|YP_003129691.1|	-	1.2	8.7	3.7	0.28	10.8	0.1	1.7	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Acetyltransf_1	PF00583.19	gi|257051859|ref|YP_003129692.1|	-	4.3e-16	58.7	0.2	8e-16	57.8	0.1	1.5	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.1	gi|257051859|ref|YP_003129692.1|	-	1.3e-10	41.4	0.2	1.6e-10	41.1	0.1	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.1	gi|257051859|ref|YP_003129692.1|	-	2.3e-10	40.4	0.0	4.7e-10	39.4	0.0	1.5	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|257051859|ref|YP_003129692.1|	-	6e-06	25.9	0.0	1.1e-05	25.0	0.0	1.4	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_9	PF13527.1	gi|257051859|ref|YP_003129692.1|	-	1.7e-05	24.6	0.0	2.1e-05	24.3	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.1	gi|257051859|ref|YP_003129692.1|	-	0.00048	20.1	0.0	0.00056	19.8	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.1	gi|257051859|ref|YP_003129692.1|	-	0.0039	17.0	0.1	0.021	14.6	0.0	1.9	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.1	gi|257051859|ref|YP_003129692.1|	-	0.012	15.4	0.0	0.022	14.6	0.0	1.4	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
DUF3749	PF12568.3	gi|257051859|ref|YP_003129692.1|	-	0.025	14.1	0.2	0.032	13.8	0.2	1.2	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
NAD_binding_10	PF13460.1	gi|257051860|ref|YP_003129693.1|	-	1.9e-39	135.5	1.4	2.2e-39	135.3	1.0	1.0	1	0	0	1	1	1	1	NADH(P)-binding
Epimerase	PF01370.16	gi|257051860|ref|YP_003129693.1|	-	3.1e-07	30.0	0.0	4.1e-07	29.6	0.0	1.3	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
NmrA	PF05368.8	gi|257051860|ref|YP_003129693.1|	-	2.8e-05	23.5	0.0	3.8e-05	23.0	0.0	1.2	1	0	0	1	1	1	1	NmrA-like	family
Saccharop_dh	PF03435.13	gi|257051860|ref|YP_003129693.1|	-	2.9e-05	23.2	0.1	3.8e-05	22.8	0.1	1.1	1	0	0	1	1	1	1	Saccharopine	dehydrogenase
TrkA_N	PF02254.13	gi|257051860|ref|YP_003129693.1|	-	4.1e-05	23.5	0.1	6.4e-05	22.9	0.1	1.3	1	0	0	1	1	1	1	TrkA-N	domain
adh_short	PF00106.20	gi|257051860|ref|YP_003129693.1|	-	0.00079	19.3	3.6	0.0044	16.9	2.5	2.2	1	1	0	1	1	1	1	short	chain	dehydrogenase
RmlD_sub_bind	PF04321.12	gi|257051860|ref|YP_003129693.1|	-	0.0042	16.0	0.1	0.0067	15.3	0.0	1.3	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
DFP	PF04127.10	gi|257051860|ref|YP_003129693.1|	-	0.053	13.1	0.0	0.08	12.5	0.0	1.2	1	0	0	1	1	1	0	DNA	/	pantothenate	metabolism	flavoprotein
DapB_N	PF01113.15	gi|257051860|ref|YP_003129693.1|	-	0.061	13.2	0.3	0.099	12.5	0.2	1.5	1	1	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
CoA_binding_2	PF13380.1	gi|257051860|ref|YP_003129693.1|	-	0.067	13.3	0.0	0.18	11.9	0.0	1.7	2	0	0	2	2	2	0	CoA	binding	domain
ApbA	PF02558.11	gi|257051860|ref|YP_003129693.1|	-	0.1	12.0	0.0	0.13	11.7	0.0	1.2	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
EF-hand_1	PF00036.27	gi|257051860|ref|YP_003129693.1|	-	0.12	11.7	0.2	0.39	10.1	0.1	1.9	1	0	0	1	1	1	0	EF	hand
3Beta_HSD	PF01073.14	gi|257051860|ref|YP_003129693.1|	-	0.14	10.8	0.0	0.21	10.2	0.0	1.4	1	1	0	1	1	1	0	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
eIF-1a	PF01176.14	gi|257051862|ref|YP_003129695.1|	-	6.7e-23	79.8	0.1	8.4e-23	79.5	0.1	1.1	1	0	0	1	1	1	1	Translation	initiation	factor	1A	/	IF-1
Glycos_transf_1	PF00534.15	gi|257051863|ref|YP_003129696.1|	-	1.1e-13	50.9	0.0	4.2e-13	49.0	0.0	2.0	2	1	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|257051863|ref|YP_003129696.1|	-	1.5e-11	44.6	0.0	7.6e-11	42.3	0.0	2.1	2	1	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.1	gi|257051863|ref|YP_003129696.1|	-	7.5e-07	29.4	0.1	1.5e-06	28.4	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_transf_4	PF13439.1	gi|257051863|ref|YP_003129696.1|	-	2.8e-06	27.1	0.0	4.1e-06	26.6	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_1_2	PF13524.1	gi|257051863|ref|YP_003129696.1|	-	3.6e-06	27.1	0.0	7.7e-06	26.1	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
eIF-5_eIF-2B	PF01873.12	gi|257051864|ref|YP_003129697.1|	-	1.1e-28	99.3	0.0	1.6e-28	98.8	0.0	1.2	1	0	0	1	1	1	1	Domain	found	in	IF2B/IF5
TRAM	PF01938.15	gi|257051864|ref|YP_003129697.1|	-	9e-08	31.7	0.7	1.4e-07	31.1	0.5	1.3	1	0	0	1	1	1	1	TRAM	domain
DUF2387	PF09526.5	gi|257051864|ref|YP_003129697.1|	-	0.019	14.8	0.2	0.034	14.0	0.1	1.4	1	0	0	1	1	1	0	Probable	metal-binding	protein	(DUF2387)
zf-ribbon_3	PF13248.1	gi|257051864|ref|YP_003129697.1|	-	0.038	13.2	0.7	5.7	6.2	0.0	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|257051864|ref|YP_003129697.1|	-	0.14	12.1	0.6	0.28	11.1	0.4	1.5	1	0	0	1	1	1	0	Zinc	ribbon	domain
Lar_restr_allev	PF14354.1	gi|257051864|ref|YP_003129697.1|	-	0.42	10.9	2.1	6.5	7.1	1.5	2.2	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
DNA_RNApol_7kD	PF03604.8	gi|257051864|ref|YP_003129697.1|	-	0.67	9.4	3.4	13	5.3	2.9	2.1	1	1	1	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
KH_2	PF07650.12	gi|257051865|ref|YP_003129698.1|	-	9.5e-17	60.3	0.4	3.3e-11	42.5	0.1	2.1	2	0	0	2	2	2	2	KH	domain
KH_5	PF13184.1	gi|257051865|ref|YP_003129698.1|	-	4.7e-10	39.1	0.0	1.2e-09	37.7	0.0	1.7	2	0	0	2	2	2	1	NusA-like	KH	domain
KH_4	PF13083.1	gi|257051865|ref|YP_003129698.1|	-	5.8e-09	35.4	0.6	0.0029	17.2	0.0	2.2	2	0	0	2	2	2	2	KH	domain
KH_1	PF00013.24	gi|257051865|ref|YP_003129698.1|	-	0.0001	21.8	0.0	0.0057	16.2	0.0	2.4	2	0	0	2	2	2	1	KH	domain
RNA_pol_Rpb1_5	PF04998.12	gi|257051866|ref|YP_003129699.1|	-	1.7e-39	135.7	0.5	1.1e-30	106.8	0.1	2.2	2	0	0	2	2	2	2	RNA	polymerase	Rpb1,	domain	5
LAGLIDADG_3	PF14528.1	gi|257051866|ref|YP_003129699.1|	-	1.2e-15	57.4	0.1	4.6e-10	39.5	0.0	2.8	2	0	0	2	2	2	2	LAGLIDADG-like	domain
Intein_splicing	PF14890.1	gi|257051866|ref|YP_003129699.1|	-	0.00011	21.2	0.0	0.00067	18.6	0.0	2.0	1	1	0	1	1	1	1	Intein	splicing	domain
RNA_pol_Rpb1_1	PF04997.7	gi|257051867|ref|YP_003129700.1|	-	9.6e-83	278.2	0.0	6.9e-53	180.0	0.0	2.2	2	0	0	2	2	2	2	RNA	polymerase	Rpb1,	domain	1
RNA_pol_Rpb1_2	PF00623.15	gi|257051867|ref|YP_003129700.1|	-	9.3e-65	217.6	0.1	1.5e-64	216.9	0.1	1.3	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	2
RNA_pol_Rpb1_4	PF05000.12	gi|257051867|ref|YP_003129700.1|	-	5.2e-33	113.0	0.0	1.1e-32	111.9	0.0	1.6	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	4
RNA_pol_Rpb1_3	PF04983.13	gi|257051867|ref|YP_003129700.1|	-	8.3e-30	103.5	0.0	1.4e-29	102.9	0.0	1.4	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	3
RNA_pol_Rpb1_5	PF04998.12	gi|257051867|ref|YP_003129700.1|	-	3e-28	98.8	0.0	5.2e-28	98.0	0.0	1.3	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	5
zf-ISL3	PF14690.1	gi|257051867|ref|YP_003129700.1|	-	5.3	7.1	10.1	0.15	12.0	0.1	2.9	3	0	0	3	3	3	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
RNA_pol_Rpb2_6	PF00562.23	gi|257051868|ref|YP_003129701.1|	-	1.4e-123	412.4	0.0	2.1e-123	411.8	0.0	1.3	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	6
RNA_pol_Rpb2_7	PF04560.15	gi|257051868|ref|YP_003129701.1|	-	7.5e-29	99.8	0.1	1.4e-28	98.9	0.1	1.4	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	7
RNA_pol_Rpb2_4	PF04566.8	gi|257051868|ref|YP_003129701.1|	-	1.9e-24	85.1	0.7	4.1e-24	84.1	0.5	1.6	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	4
RNA_pol_Rpb2_5	PF04567.12	gi|257051868|ref|YP_003129701.1|	-	2.5e-10	40.1	3.3	6.8e-10	38.7	2.3	1.8	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	5
DZR	PF12773.2	gi|257051868|ref|YP_003129701.1|	-	0.013	15.2	0.6	0.024	14.4	0.4	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
OrfB_Zn_ribbon	PF07282.6	gi|257051868|ref|YP_003129701.1|	-	0.075	12.7	1.7	0.15	11.7	1.2	1.4	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zf-NADH-PPase	PF09297.6	gi|257051868|ref|YP_003129701.1|	-	0.11	11.9	2.6	0.21	11.1	0.9	2.0	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
zf-ribbon_3	PF13248.1	gi|257051868|ref|YP_003129701.1|	-	0.18	11.0	0.6	2	7.7	0.0	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
Auto_anti-p27	PF06677.7	gi|257051868|ref|YP_003129701.1|	-	0.19	11.4	1.1	0.34	10.6	0.8	1.4	1	0	0	1	1	1	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
NOB1_Zn_bind	PF08772.6	gi|257051868|ref|YP_003129701.1|	-	0.22	11.3	0.1	0.46	10.3	0.1	1.5	1	0	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
RNA_pol_Rpb2_1	PF04563.10	gi|257051869|ref|YP_003129702.1|	-	8.2e-54	181.6	0.0	1e-53	181.3	0.0	1.1	1	0	0	1	1	1	1	RNA	polymerase	beta	subunit
RNA_pol_Rpb2_2	PF04561.9	gi|257051869|ref|YP_003129702.1|	-	1.7e-28	99.3	0.1	2.8e-28	98.6	0.1	1.3	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	2
RNA_pol_Rpb2_3	PF04565.11	gi|257051869|ref|YP_003129702.1|	-	6.9e-23	80.1	0.0	1.3e-22	79.3	0.0	1.5	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	3
RNA_pol_Rpb5_C	PF01191.14	gi|257051870|ref|YP_003129703.1|	-	5.9e-26	89.8	0.2	6.5e-26	89.7	0.1	1.0	1	0	0	1	1	1	1	RNA	polymerase	Rpb5,	C-terminal	domain
DUF3006	PF11213.3	gi|257051870|ref|YP_003129703.1|	-	0.0077	15.9	0.2	0.29	10.9	0.0	2.2	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF3006)
zf-ribbon_3	PF13248.1	gi|257051871|ref|YP_003129704.1|	-	2.5e-08	32.8	0.3	3.9e-08	32.2	0.2	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.2	gi|257051871|ref|YP_003129704.1|	-	1.2e-06	28.1	0.2	1.6e-06	27.7	0.1	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.1	gi|257051871|ref|YP_003129704.1|	-	2.3e-06	26.8	1.0	3.6e-06	26.2	0.7	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|257051871|ref|YP_003129704.1|	-	2.2	7.6	5.1	5.8	6.3	3.3	1.9	1	1	1	2	2	2	0	TFIIB	zinc-binding
Spectrin	PF00435.16	gi|257051872|ref|YP_003129705.1|	-	0.07	13.4	0.8	7.6	6.8	0.2	2.4	2	0	0	2	2	2	0	Spectrin	repeat
TPR_MLP1_2	PF07926.7	gi|257051872|ref|YP_003129705.1|	-	0.1	12.3	1.4	0.13	11.9	0.2	1.7	2	0	0	2	2	2	0	TPR/MLP1/MLP2-like	protein
IncA	PF04156.9	gi|257051872|ref|YP_003129705.1|	-	0.18	11.3	4.8	0.34	10.4	0.5	2.4	3	0	0	3	3	3	0	IncA	protein
CCDC-167	PF15188.1	gi|257051872|ref|YP_003129705.1|	-	0.23	11.4	2.9	3.9	7.4	0.6	2.3	2	0	0	2	2	2	0	Coiled-coil	domain-containing	protein	167
DivIC	PF04977.10	gi|257051872|ref|YP_003129705.1|	-	0.4	10.2	4.9	0.22	11.0	1.4	1.9	2	0	0	2	2	2	0	Septum	formation	initiator
Hemerythrin	PF01814.18	gi|257051872|ref|YP_003129705.1|	-	1.3	9.2	6.9	2.3	8.3	0.6	2.7	1	1	0	2	2	2	0	Hemerythrin	HHE	cation	binding	domain
PilJ	PF13675.1	gi|257051872|ref|YP_003129705.1|	-	1.7	8.9	4.8	2.1	8.6	0.2	2.6	3	0	0	3	3	3	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
DUF2312	PF10073.4	gi|257051872|ref|YP_003129705.1|	-	1.8	7.9	4.8	1.2	8.5	1.5	2.0	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2312)
Pup	PF05639.6	gi|257051872|ref|YP_003129705.1|	-	2.4	8.6	5.2	3.8	8.0	1.2	2.5	2	0	0	2	2	2	0	Pup-like	protein
DUF4140	PF13600.1	gi|257051872|ref|YP_003129705.1|	-	2.8	8.4	8.1	0.46	10.9	0.6	2.5	3	0	0	3	3	3	0	N-terminal	domain	of	unknown	function	(DUF4140)
Aminotran_5	PF00266.14	gi|257051873|ref|YP_003129706.1|	-	5.4e-62	209.6	0.0	6.5e-62	209.4	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-V
Aminotran_1_2	PF00155.16	gi|257051873|ref|YP_003129706.1|	-	4.2e-12	45.7	0.0	4.5e-11	42.3	0.0	2.0	1	1	0	1	1	1	1	Aminotransferase	class	I	and	II
EF-hand_5	PF13202.1	gi|257051873|ref|YP_003129706.1|	-	0.078	12.3	0.0	0.18	11.2	0.0	1.6	1	0	0	1	1	1	0	EF	hand
Phage_integrase	PF00589.17	gi|257051874|ref|YP_003129707.1|	-	2.6e-09	37.0	0.0	8.3e-08	32.0	0.0	2.4	3	0	0	3	3	3	1	Phage	integrase	family
Phage_int_SAM_1	PF02899.12	gi|257051874|ref|YP_003129707.1|	-	2.3e-07	30.8	4.6	3.4e-07	30.3	0.7	2.7	2	1	1	3	3	3	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_4	PF13495.1	gi|257051874|ref|YP_003129707.1|	-	0.045	14.0	0.0	0.37	11.1	0.0	2.1	1	1	0	1	1	1	0	Phage	integrase,	N-terminal	SAM-like	domain
HTH_45	PF14947.1	gi|257051875|ref|YP_003129708.1|	-	0.00041	20.1	0.3	0.00071	19.3	0.2	1.5	1	1	0	1	1	1	1	Winged	helix-turn-helix
HTH_27	PF13463.1	gi|257051875|ref|YP_003129708.1|	-	0.00085	19.6	0.1	0.0011	19.2	0.1	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
MotA_activ	PF09114.5	gi|257051875|ref|YP_003129708.1|	-	0.0025	17.5	0.0	0.0025	17.5	0.0	1.1	1	0	0	1	1	1	1	Transcription	factor	MotA,	activation	domain
MarR_2	PF12802.2	gi|257051875|ref|YP_003129708.1|	-	0.0028	17.2	0.1	0.0056	16.3	0.1	1.5	1	1	0	1	1	1	1	MarR	family
Mrr_N	PF14338.1	gi|257051875|ref|YP_003129708.1|	-	0.011	15.8	0.1	0.016	15.2	0.0	1.4	1	1	0	1	1	1	0	Mrr	N-terminal	domain
Rio2_N	PF09202.6	gi|257051875|ref|YP_003129708.1|	-	0.032	14.3	0.1	0.041	13.9	0.0	1.2	1	0	0	1	1	1	0	Rio2,	N-terminal
RepL	PF05732.6	gi|257051875|ref|YP_003129708.1|	-	0.04	13.1	0.0	0.045	12.9	0.0	1.1	1	0	0	1	1	1	0	Firmicute	plasmid	replication	protein	(RepL)
HTH_24	PF13412.1	gi|257051875|ref|YP_003129708.1|	-	0.13	11.6	0.1	0.17	11.2	0.1	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
DUF1628	PF07790.6	gi|257051876|ref|YP_003129709.1|	-	2.1e-24	86.0	1.5	4.2e-24	85.1	1.0	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1628)
phage_tail_N	PF08400.5	gi|257051876|ref|YP_003129709.1|	-	0.025	14.2	0.1	0.04	13.6	0.1	1.2	1	0	0	1	1	1	0	Prophage	tail	fibre	N-terminal
gpUL132	PF11359.3	gi|257051876|ref|YP_003129709.1|	-	0.049	12.9	0.0	0.15	11.3	0.0	1.7	1	1	1	2	2	2	0	Glycoprotein	UL132
DUF1628	PF07790.6	gi|257051877|ref|YP_003129710.1|	-	4.1e-23	81.9	1.1	6.8e-23	81.2	0.8	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1628)
HTH_38	PF13936.1	gi|257051878|ref|YP_003129711.1|	-	8e-09	34.9	0.4	7.3e-06	25.4	0.0	2.3	2	0	0	2	2	2	2	Helix-turn-helix	domain
Sigma70_r4_2	PF08281.7	gi|257051878|ref|YP_003129711.1|	-	1.3e-08	34.2	0.0	0.0003	20.1	0.0	2.3	2	0	0	2	2	2	2	Sigma-70,	region	4
Sigma70_r4	PF04545.11	gi|257051878|ref|YP_003129711.1|	-	3.9e-06	26.0	1.5	0.051	12.8	0.0	2.2	2	0	0	2	2	2	2	Sigma-70,	region	4
Sigma70_ECF	PF07638.6	gi|257051878|ref|YP_003129711.1|	-	1.4e-05	24.8	0.4	0.0029	17.3	0.0	2.0	1	1	1	2	2	2	2	ECF	sigma	factor
HTH_AsnC-type	PF13404.1	gi|257051878|ref|YP_003129711.1|	-	0.00044	19.7	2.9	0.00093	18.6	0.0	2.3	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.1	gi|257051878|ref|YP_003129711.1|	-	0.0009	18.5	0.3	0.0027	17.0	0.0	1.9	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_23	PF13384.1	gi|257051878|ref|YP_003129711.1|	-	0.0013	18.3	4.1	0.0046	16.5	0.3	2.2	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_IclR	PF09339.5	gi|257051878|ref|YP_003129711.1|	-	0.0057	16.2	0.0	0.19	11.3	0.0	2.4	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
Phage_antitermQ	PF06530.7	gi|257051878|ref|YP_003129711.1|	-	0.023	14.2	0.0	0.73	9.4	0.0	2.1	1	1	1	2	2	2	0	Phage	antitermination	protein	Q
HTH_11	PF08279.7	gi|257051878|ref|YP_003129711.1|	-	0.034	13.7	1.3	0.32	10.6	0.1	2.3	2	0	0	2	2	2	0	HTH	domain
MarR_2	PF12802.2	gi|257051878|ref|YP_003129711.1|	-	0.043	13.4	0.3	8.8	6.0	0.1	2.4	2	0	0	2	2	2	0	MarR	family
FaeA	PF04703.7	gi|257051878|ref|YP_003129711.1|	-	0.087	12.9	1.2	0.18	11.9	0.0	2.0	2	1	0	2	2	2	0	FaeA-like	protein
GerE	PF00196.14	gi|257051878|ref|YP_003129711.1|	-	0.093	12.0	0.1	2.6	7.4	0.0	2.2	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	luxR	family
HD	PF01966.17	gi|257051880|ref|YP_003129713.1|	-	3.9e-13	49.4	0.0	2.5e-12	46.8	0.0	2.4	1	1	0	1	1	1	1	HD	domain
HD_assoc	PF13286.1	gi|257051880|ref|YP_003129713.1|	-	5.1e-11	42.6	0.4	1.9e-10	40.8	0.3	2.0	1	1	0	1	1	1	1	Phosphohydrolase-associated	domain
DUF494	PF04361.8	gi|257051881|ref|YP_003129714.1|	-	0.029	14.0	0.1	0.033	13.8	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF494)
Sin3_corepress	PF08295.7	gi|257051881|ref|YP_003129714.1|	-	0.049	13.3	0.1	0.061	13.0	0.1	1.1	1	0	0	1	1	1	0	Sin3	family	co-repressor
TrmB	PF01978.14	gi|257051881|ref|YP_003129714.1|	-	0.058	13.1	0.2	1.2	8.8	0.0	2.1	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
DUF4380	PF14315.1	gi|257051881|ref|YP_003129714.1|	-	0.094	11.8	0.0	0.097	11.8	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4380)
SelB-wing_2	PF09106.6	gi|257051881|ref|YP_003129714.1|	-	0.096	12.6	0.1	0.12	12.2	0.1	1.2	1	0	0	1	1	1	0	Elongation	factor	SelB,	winged	helix
UBA_3	PF09288.5	gi|257051881|ref|YP_003129714.1|	-	0.11	12.0	0.0	0.17	11.4	0.0	1.4	1	0	0	1	1	1	0	Fungal	ubiquitin-associated	domain
DUF2786	PF10979.3	gi|257051881|ref|YP_003129714.1|	-	0.39	10.4	2.1	9.7	6.0	0.0	2.4	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2786)
FlgD_ig	PF13860.1	gi|257051883|ref|YP_003129716.1|	-	2.9e-07	30.1	11.7	0.00029	20.5	1.1	2.5	2	0	0	2	2	2	2	FlgD	Ig-like	domain
DUF3244	PF11589.3	gi|257051883|ref|YP_003129716.1|	-	6.3e-06	25.8	0.6	0.0061	16.2	0.0	2.8	2	1	1	3	3	3	2	Domain	of	unknown	function	(DUF3244)
CopC	PF04234.7	gi|257051883|ref|YP_003129716.1|	-	0.0029	18.2	3.3	0.51	11.0	0.0	3.1	1	1	2	3	3	3	1	CopC	domain
A2M_N_2	PF07703.9	gi|257051883|ref|YP_003129716.1|	-	0.012	15.4	0.2	0.14	11.9	0.1	2.4	1	1	1	2	2	2	0	Alpha-2-macroglobulin	family	N-terminal	region
DUF1628	PF07790.6	gi|257051883|ref|YP_003129716.1|	-	0.91	10.3	5.9	16	6.3	0.3	2.9	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1628)
Zot	PF05707.7	gi|257051887|ref|YP_003129720.1|	-	0.018	14.4	0.0	0.03	13.8	0.0	1.3	1	0	0	1	1	1	0	Zonular	occludens	toxin	(Zot)
AAA_25	PF13481.1	gi|257051887|ref|YP_003129720.1|	-	0.023	14.1	0.0	1.9	7.8	0.0	2.4	1	1	1	2	2	2	0	AAA	domain
AAA_10	PF12846.2	gi|257051887|ref|YP_003129720.1|	-	0.024	14.0	0.0	0.056	12.8	0.0	1.5	1	1	0	1	1	1	0	AAA-like	domain
TIR_2	PF13676.1	gi|257051889|ref|YP_003129722.1|	-	1e-14	54.5	0.0	1.9e-14	53.6	0.0	1.5	1	0	0	1	1	1	1	TIR	domain
TIR	PF01582.15	gi|257051889|ref|YP_003129722.1|	-	5.5e-10	38.8	0.1	1.1e-09	37.9	0.0	1.5	1	1	0	1	1	1	1	TIR	domain
DUF436	PF04260.7	gi|257051889|ref|YP_003129722.1|	-	0.04	13.4	0.0	0.086	12.3	0.0	1.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF436)
Sigma70_r4_2	PF08281.7	gi|257051891|ref|YP_003129724.1|	-	1.2e-07	31.0	0.0	1.4e-07	30.8	0.0	1.1	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_38	PF13936.1	gi|257051891|ref|YP_003129724.1|	-	0.0018	17.7	0.0	0.0028	17.1	0.0	1.3	1	1	0	1	1	1	1	Helix-turn-helix	domain
Ribosomal_S10	PF00338.17	gi|257051895|ref|YP_003129728.1|	-	9.2e-29	99.1	0.0	1e-28	99.0	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S10p/S20e
GTP_EFTU	PF00009.22	gi|257051896|ref|YP_003129729.1|	-	6.8e-60	201.7	0.1	9.6e-60	201.2	0.1	1.1	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
GTP_EFTU_D3	PF03143.12	gi|257051896|ref|YP_003129729.1|	-	7.9e-30	102.9	0.0	2.5e-29	101.3	0.0	1.9	2	0	0	2	2	2	1	Elongation	factor	Tu	C-terminal	domain
GTP_EFTU_D2	PF03144.20	gi|257051896|ref|YP_003129729.1|	-	7.8e-16	57.9	3.0	2.5e-15	56.3	1.0	2.4	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.18	gi|257051896|ref|YP_003129729.1|	-	6.7e-08	32.4	0.0	1.3e-07	31.5	0.0	1.5	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
Miro	PF08477.8	gi|257051896|ref|YP_003129729.1|	-	2.5e-05	24.7	0.2	0.0014	19.1	0.0	3.3	2	1	1	3	3	3	1	Miro-like	protein
Gtr1_RagA	PF04670.7	gi|257051896|ref|YP_003129729.1|	-	8.6e-05	21.7	0.1	0.054	12.6	0.0	2.2	2	0	0	2	2	2	2	Gtr1/RagA	G	protein	conserved	region
GTP_EFTU_D4	PF14578.1	gi|257051896|ref|YP_003129729.1|	-	0.00046	19.7	0.1	0.0015	18.1	0.1	1.8	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	4
FeoB_N	PF02421.13	gi|257051896|ref|YP_003129729.1|	-	0.0035	16.6	0.3	0.096	11.9	0.2	2.8	2	1	0	2	2	2	1	Ferrous	iron	transport	protein	B
SRPRB	PF09439.5	gi|257051896|ref|YP_003129729.1|	-	0.0058	15.8	0.0	0.33	10.1	0.0	2.5	1	1	0	2	2	2	1	Signal	recognition	particle	receptor	beta	subunit
Dynamin_N	PF00350.18	gi|257051896|ref|YP_003129729.1|	-	0.0062	16.3	0.1	2.7	7.7	0.0	2.4	1	1	1	2	2	2	2	Dynamin	family
Septin	PF00735.13	gi|257051896|ref|YP_003129729.1|	-	0.0088	15.0	0.0	0.02	13.9	0.0	1.5	1	0	0	1	1	1	1	Septin
ATP_bind_1	PF03029.12	gi|257051896|ref|YP_003129729.1|	-	0.044	13.3	1.1	0.28	10.7	0.4	2.2	2	1	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
Homoserine_dh	PF00742.14	gi|257051897|ref|YP_003129730.1|	-	3.2e-48	163.7	0.1	5.8e-48	162.9	0.0	1.4	1	0	0	1	1	1	1	Homoserine	dehydrogenase
NAD_binding_3	PF03447.11	gi|257051897|ref|YP_003129730.1|	-	2.3e-06	27.9	0.2	5.2e-06	26.8	0.2	1.6	1	0	0	1	1	1	1	Homoserine	dehydrogenase,	NAD	binding	domain
ELFV_dehydrog	PF00208.16	gi|257051897|ref|YP_003129730.1|	-	3e-05	23.7	0.0	4.8e-05	23.0	0.0	1.3	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
3HCDH_N	PF02737.13	gi|257051897|ref|YP_003129730.1|	-	0.013	15.2	0.1	0.019	14.5	0.1	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.14	gi|257051897|ref|YP_003129730.1|	-	0.02	14.0	0.0	0.03	13.4	0.0	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
TrkA_N	PF02254.13	gi|257051897|ref|YP_003129730.1|	-	0.055	13.4	0.0	0.23	11.4	0.0	2.0	2	0	0	2	2	2	0	TrkA-N	domain
AlaDh_PNT_C	PF01262.16	gi|257051897|ref|YP_003129730.1|	-	0.078	12.5	0.1	0.12	11.8	0.1	1.3	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
ACT	PF01842.20	gi|257051898|ref|YP_003129731.1|	-	3.3e-05	23.2	1.8	0.0012	18.2	0.0	2.9	3	1	0	3	3	3	1	ACT	domain
DUF4349	PF14257.1	gi|257051898|ref|YP_003129731.1|	-	0.0065	15.7	0.5	1.4	8.1	0.3	2.0	1	1	1	2	2	2	2	Domain	of	unknown	function	(DUF4349)
Sigma70_r1_1	PF03979.9	gi|257051898|ref|YP_003129731.1|	-	0.065	13.1	0.1	0.18	11.7	0.0	1.8	2	1	0	2	2	2	0	Sigma-70	factor,	region	1.1
Chorismate_bind	PF00425.13	gi|257051899|ref|YP_003129732.1|	-	1.8e-76	256.8	0.0	2.2e-76	256.5	0.0	1.1	1	0	0	1	1	1	1	chorismate	binding	enzyme
TPP_enzyme_N	PF02776.13	gi|257051900|ref|YP_003129733.1|	-	5.5e-33	113.8	1.3	1e-32	112.9	0.9	1.5	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_C	PF02775.16	gi|257051900|ref|YP_003129733.1|	-	1e-06	28.4	0.0	1.8e-06	27.5	0.0	1.4	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
TPP_enzyme_M	PF00205.17	gi|257051900|ref|YP_003129733.1|	-	6.2e-05	22.7	0.0	0.00021	21.0	0.0	1.9	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	central	domain
DnaJ	PF00226.26	gi|257051901|ref|YP_003129734.1|	-	5.1e-17	61.3	0.2	6.9e-17	60.9	0.1	1.2	1	0	0	1	1	1	1	DnaJ	domain
RPT	PF13446.1	gi|257051901|ref|YP_003129734.1|	-	0.012	15.0	0.1	0.021	14.2	0.1	1.3	1	0	0	1	1	1	0	A	repeated	domain	in	UCH-protein
Pex14_N	PF04695.8	gi|257051901|ref|YP_003129734.1|	-	0.25	11.3	1.7	0.45	10.5	1.2	1.4	1	0	0	1	1	1	0	Peroxisomal	membrane	anchor	protein	(Pex14p)	conserved	region
TrmB	PF01978.14	gi|257051902|ref|YP_003129735.1|	-	4e-16	58.4	0.0	5.5e-16	58.0	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.17	gi|257051902|ref|YP_003129735.1|	-	1.3e-06	27.9	0.1	3e-06	26.8	0.0	1.7	2	0	0	2	2	1	1	MarR	family
HTH_IclR	PF09339.5	gi|257051902|ref|YP_003129735.1|	-	1.4e-06	27.7	0.0	2.8e-06	26.8	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.2	gi|257051902|ref|YP_003129735.1|	-	1.7e-06	27.5	0.0	2.7e-06	26.9	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.1	gi|257051902|ref|YP_003129735.1|	-	7.5e-05	22.9	0.0	0.00017	21.8	0.0	1.7	1	1	0	1	1	1	1	Winged	helix	DNA-binding	domain
Penicillinase_R	PF03965.11	gi|257051902|ref|YP_003129735.1|	-	7.8e-05	22.7	0.0	9.9e-05	22.4	0.0	1.1	1	0	0	1	1	1	1	Penicillinase	repressor
HTH_11	PF08279.7	gi|257051902|ref|YP_003129735.1|	-	0.00029	20.4	0.0	0.00048	19.7	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
HTH_20	PF12840.2	gi|257051902|ref|YP_003129735.1|	-	0.00042	20.0	0.0	0.00079	19.1	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_38	PF13936.1	gi|257051902|ref|YP_003129735.1|	-	0.0011	18.4	0.0	0.0028	17.1	0.0	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
RuvB_C	PF05491.8	gi|257051902|ref|YP_003129735.1|	-	0.0011	18.5	0.0	0.002	17.7	0.0	1.3	1	0	0	1	1	1	1	Holliday	junction	DNA	helicase	ruvB	C-terminus
HTH_24	PF13412.1	gi|257051902|ref|YP_003129735.1|	-	0.0012	18.1	0.0	0.0018	17.6	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_23	PF13384.1	gi|257051902|ref|YP_003129735.1|	-	0.0034	16.9	0.0	0.0074	15.9	0.0	1.6	1	0	0	1	1	1	1	Homeodomain-like	domain
PadR	PF03551.9	gi|257051902|ref|YP_003129735.1|	-	0.012	15.3	0.1	0.026	14.2	0.1	1.6	1	1	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
Rrf2	PF02082.15	gi|257051902|ref|YP_003129735.1|	-	0.022	14.8	0.0	0.036	14.1	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	regulator
Sigma70_r4_2	PF08281.7	gi|257051902|ref|YP_003129735.1|	-	0.023	14.1	0.0	0.11	12.0	0.0	2.1	2	1	0	2	2	2	0	Sigma-70,	region	4
Dimerisation	PF08100.6	gi|257051902|ref|YP_003129735.1|	-	0.03	14.1	0.0	0.062	13.1	0.0	1.5	1	0	0	1	1	1	0	Dimerisation	domain
Sigma54_DBD	PF04552.8	gi|257051902|ref|YP_003129735.1|	-	0.033	13.7	0.0	0.044	13.2	0.0	1.2	1	0	0	1	1	1	0	Sigma-54,	DNA	binding	domain
HTH_29	PF13551.1	gi|257051902|ref|YP_003129735.1|	-	0.035	14.2	0.0	0.047	13.8	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn	helix
2OG-Fe_Oxy_2	PF10014.4	gi|257051902|ref|YP_003129735.1|	-	0.044	13.1	0.1	0.052	12.9	0.0	1.2	1	0	0	1	1	1	0	2OG-Fe	dioxygenase
HTH_Crp_2	PF13545.1	gi|257051902|ref|YP_003129735.1|	-	0.048	13.4	0.1	0.096	12.4	0.0	1.6	1	1	0	1	1	1	0	Crp-like	helix-turn-helix	domain
UMPH-1	PF05822.7	gi|257051902|ref|YP_003129735.1|	-	0.12	11.6	0.0	0.17	11.1	0.0	1.3	1	1	0	1	1	1	0	Pyrimidine	5'-nucleotidase	(UMPH-1)
Thioredoxin	PF00085.15	gi|257051903|ref|YP_003129736.1|	-	6.3e-28	96.5	0.0	8.6e-28	96.0	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.1	gi|257051903|ref|YP_003129736.1|	-	8.9e-09	35.5	0.4	1.8e-07	31.3	0.0	2.5	1	1	1	2	2	2	1	Thioredoxin-like	domain
DSBA	PF01323.15	gi|257051903|ref|YP_003129736.1|	-	8.6e-07	28.7	0.0	1.4e-06	27.9	0.0	1.5	1	0	0	1	1	1	1	DSBA-like	thioredoxin	domain
Thioredoxin_8	PF13905.1	gi|257051903|ref|YP_003129736.1|	-	3.1e-06	27.2	0.0	0.0038	17.3	0.0	2.4	1	1	1	2	2	2	2	Thioredoxin-like
Thioredoxin_7	PF13899.1	gi|257051903|ref|YP_003129736.1|	-	4e-05	23.5	0.1	7.1e-05	22.7	0.0	1.5	1	0	0	1	1	1	1	Thioredoxin-like
Thioredoxin_9	PF14595.1	gi|257051903|ref|YP_003129736.1|	-	9.8e-05	21.9	0.2	0.0002	20.8	0.1	1.5	1	1	0	1	1	1	1	Thioredoxin
Phosducin	PF02114.11	gi|257051903|ref|YP_003129736.1|	-	0.00066	18.4	0.0	0.00084	18.1	0.0	1.0	1	0	0	1	1	1	1	Phosducin
HyaE	PF07449.6	gi|257051903|ref|YP_003129736.1|	-	0.001	18.9	0.0	0.0017	18.2	0.0	1.4	1	0	0	1	1	1	1	Hydrogenase-1	expression	protein	HyaE
Thioredoxin_3	PF13192.1	gi|257051903|ref|YP_003129736.1|	-	0.0011	18.7	0.0	0.002	17.9	0.0	1.4	1	0	0	1	1	1	1	Thioredoxin	domain
Thioredoxin_5	PF13743.1	gi|257051903|ref|YP_003129736.1|	-	0.0012	18.4	0.0	0.0019	17.7	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin
DUF836	PF05768.9	gi|257051903|ref|YP_003129736.1|	-	0.0023	18.1	0.0	0.0037	17.5	0.0	1.4	1	0	0	1	1	1	1	Glutaredoxin-like	domain	(DUF836)
Glutaredoxin	PF00462.19	gi|257051903|ref|YP_003129736.1|	-	0.0056	16.6	0.0	0.01	15.7	0.0	1.5	1	0	0	1	1	1	1	Glutaredoxin
TraF	PF13728.1	gi|257051903|ref|YP_003129736.1|	-	0.0095	15.4	0.3	0.018	14.5	0.1	1.6	1	1	1	2	2	2	1	F	plasmid	transfer	operon	protein
TrbC_Ftype	PF09673.5	gi|257051903|ref|YP_003129736.1|	-	0.026	14.1	0.1	0.05	13.1	0.0	1.5	2	0	0	2	2	2	0	Type-F	conjugative	transfer	system	pilin	assembly	protein
Thioredoxin_4	PF13462.1	gi|257051903|ref|YP_003129736.1|	-	0.054	13.4	0.1	0.074	13.0	0.1	1.5	1	1	0	1	1	1	0	Thioredoxin
AhpC-TSA	PF00578.16	gi|257051903|ref|YP_003129736.1|	-	0.062	12.9	0.2	0.45	10.2	0.1	2.0	1	1	0	1	1	1	0	AhpC/TSA	family
PhnA_Zn_Ribbon	PF08274.7	gi|257051904|ref|YP_003129737.1|	-	0.00018	21.2	3.2	0.0099	15.6	0.2	2.3	2	0	0	2	2	2	1	PhnA	Zinc-Ribbon
HypA	PF01155.14	gi|257051904|ref|YP_003129737.1|	-	0.004	16.8	0.3	0.0042	16.7	0.2	1.1	1	0	0	1	1	1	1	Hydrogenase	expression/synthesis	hypA	family
Stc1	PF12898.2	gi|257051904|ref|YP_003129737.1|	-	0.0057	16.6	0.3	0.0066	16.4	0.2	1.1	1	0	0	1	1	1	1	Stc1	domain
UPF0547	PF10571.4	gi|257051904|ref|YP_003129737.1|	-	0.015	15.0	7.2	0.025	14.2	0.4	2.1	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
zinc_ribbon_5	PF13719.1	gi|257051904|ref|YP_003129737.1|	-	0.015	14.8	1.2	0.038	13.5	1.0	1.6	1	1	0	1	1	1	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|257051904|ref|YP_003129737.1|	-	0.019	14.6	1.5	0.041	13.5	1.1	1.5	1	1	0	1	1	1	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|257051904|ref|YP_003129737.1|	-	0.021	14.7	0.5	6.1	6.8	0.0	2.2	2	0	0	2	2	2	0	Zinc	ribbon	domain
Zn_Tnp_IS1595	PF12760.2	gi|257051904|ref|YP_003129737.1|	-	0.023	14.5	1.7	0.081	12.7	1.2	1.8	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
zf-H2C2_2	PF13465.1	gi|257051904|ref|YP_003129737.1|	-	0.029	14.6	2.5	1.5	9.2	0.1	2.2	2	0	0	2	2	2	0	Zinc-finger	double	domain
DUF329	PF03884.9	gi|257051904|ref|YP_003129737.1|	-	0.03	13.8	0.9	1.8	8.1	0.1	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF329)
NMD3	PF04981.8	gi|257051904|ref|YP_003129737.1|	-	0.031	13.3	0.3	0.031	13.3	0.2	1.0	1	0	0	1	1	1	0	NMD3	family
CpXC	PF14353.1	gi|257051904|ref|YP_003129737.1|	-	0.05	13.5	0.2	8.4	6.3	0.0	2.1	2	0	0	2	2	2	0	CpXC	protein
DUF2296	PF10058.4	gi|257051904|ref|YP_003129737.1|	-	0.061	13.0	0.1	0.086	12.5	0.1	1.3	1	1	0	1	1	1	0	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
TF_Zn_Ribbon	PF08271.7	gi|257051904|ref|YP_003129737.1|	-	0.065	12.5	1.7	2.3	7.6	0.1	2.2	2	0	0	2	2	2	0	TFIIB	zinc-binding
zf-CSL	PF05207.8	gi|257051904|ref|YP_003129737.1|	-	0.073	12.5	0.5	0.12	11.9	0.4	1.4	1	0	0	1	1	1	0	CSL	zinc	finger
Opy2	PF09463.5	gi|257051904|ref|YP_003129737.1|	-	0.082	13.0	1.1	4.6	7.4	0.1	2.1	2	0	0	2	2	2	0	Opy2	protein
TFIIS_C	PF01096.13	gi|257051904|ref|YP_003129737.1|	-	0.093	12.3	1.7	2	8.1	0.2	2.1	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
DZR	PF12773.2	gi|257051904|ref|YP_003129737.1|	-	0.099	12.4	2.0	0.17	11.7	1.4	1.4	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-3CxxC	PF13695.1	gi|257051904|ref|YP_003129737.1|	-	0.1	12.8	0.1	0.7	10.1	0.0	1.9	2	0	0	2	2	2	0	Zinc-binding	domain
zf-RING_3	PF14369.1	gi|257051904|ref|YP_003129737.1|	-	0.11	12.5	4.4	0.66	10.0	3.1	2.0	1	1	1	2	2	2	0	zinc-finger
zf-HYPF	PF07503.7	gi|257051904|ref|YP_003129737.1|	-	0.13	11.7	2.4	1.1	8.7	0.2	2.1	2	0	0	2	2	2	0	HypF	finger
Elf1	PF05129.8	gi|257051904|ref|YP_003129737.1|	-	0.17	11.5	0.9	0.35	10.5	0.2	1.7	1	1	1	2	2	2	0	Transcription	elongation	factor	Elf1	like
zf-RING_4	PF14570.1	gi|257051904|ref|YP_003129737.1|	-	0.21	11.1	3.6	0.87	9.2	0.1	2.2	2	0	0	2	2	2	0	RING/Ubox	like	zinc-binding	domain
zf-TFIIB	PF13453.1	gi|257051904|ref|YP_003129737.1|	-	0.36	10.0	2.2	0.57	9.4	1.2	1.6	1	1	0	1	1	1	0	Transcription	factor	zinc-finger
zinc-ribbons_6	PF07191.7	gi|257051904|ref|YP_003129737.1|	-	0.47	10.2	3.6	3.4	7.5	2.6	2.0	1	1	1	2	2	2	0	zinc-ribbons
zf-C2H2	PF00096.21	gi|257051904|ref|YP_003129737.1|	-	0.78	10.2	3.1	8.7	6.9	0.2	2.3	2	1	0	2	2	2	0	Zinc	finger,	C2H2	type
DUF3039	PF11238.3	gi|257051904|ref|YP_003129737.1|	-	1.6	8.2	5.3	7.8	6.0	0.3	2.2	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3039)
eIF-5_eIF-2B	PF01873.12	gi|257051905|ref|YP_003129738.1|	-	4e-33	113.7	0.0	4.6e-33	113.5	0.0	1.0	1	0	0	1	1	1	1	Domain	found	in	IF2B/IF5
TF_Zn_Ribbon	PF08271.7	gi|257051905|ref|YP_003129738.1|	-	0.099	11.9	0.4	1.9	7.8	0.1	2.3	2	0	0	2	2	2	0	TFIIB	zinc-binding
DNA_RNApol_7kD	PF03604.8	gi|257051905|ref|YP_003129738.1|	-	0.11	11.9	4.0	2.7	7.5	3.3	2.2	1	1	1	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-ribbon_3	PF13248.1	gi|257051905|ref|YP_003129738.1|	-	0.12	11.5	0.7	14	5.0	0.0	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
UPF0058	PF01893.11	gi|257051906|ref|YP_003129739.1|	-	3e-20	72.0	0.2	3.4e-20	71.8	0.2	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0058
DUF555	PF04475.7	gi|257051907|ref|YP_003129740.1|	-	8.2e-41	138.1	0.2	1.2e-40	137.6	0.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF555)
zinc_ribbon_2	PF13240.1	gi|257051907|ref|YP_003129740.1|	-	0.054	12.9	1.0	0.11	12.0	0.7	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
Tom37_C	PF11801.3	gi|257051907|ref|YP_003129740.1|	-	0.1	12.4	1.0	0.15	11.9	0.7	1.3	1	0	0	1	1	1	0	Tom37	C-terminal	domain
zf-ribbon_3	PF13248.1	gi|257051907|ref|YP_003129740.1|	-	0.11	11.7	0.2	0.22	10.7	0.1	1.5	1	0	0	1	1	1	0	zinc-ribbon	domain
Zn_Tnp_IS1595	PF12760.2	gi|257051907|ref|YP_003129740.1|	-	0.12	12.1	0.0	0.25	11.1	0.0	1.4	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
UPF0547	PF10571.4	gi|257051907|ref|YP_003129740.1|	-	0.27	10.9	1.6	0.46	10.2	0.1	1.9	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
FYDLN_acid	PF09538.5	gi|257051907|ref|YP_003129740.1|	-	7.8	7.1	18.7	45	4.6	13.0	2.1	1	1	0	1	1	1	0	Protein	of	unknown	function	(FYDLN_acid)
OGG_N	PF07934.7	gi|257051908|ref|YP_003129741.1|	-	1.8e-16	60.1	0.0	3.2e-16	59.3	0.0	1.4	1	0	0	1	1	1	1	8-oxoguanine	DNA	glycosylase,	N-terminal	domain
HhH-GPD	PF00730.20	gi|257051908|ref|YP_003129741.1|	-	1.1e-13	51.3	0.0	1.7e-13	50.7	0.0	1.2	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
PP-binding	PF00550.20	gi|257051908|ref|YP_003129741.1|	-	0.11	12.7	0.0	0.45	10.8	0.0	2.1	1	0	0	1	1	1	0	Phosphopantetheine	attachment	site
Acylphosphatase	PF00708.13	gi|257051909|ref|YP_003129742.1|	-	4.3e-29	100.4	0.1	5.1e-29	100.2	0.1	1.0	1	0	0	1	1	1	1	Acylphosphatase
HEM4	PF02602.10	gi|257051909|ref|YP_003129742.1|	-	0.017	14.3	0.1	0.38	9.9	0.0	2.0	1	1	1	2	2	2	0	Uroporphyrinogen-III	synthase	HemD
Carb_kinase	PF01256.12	gi|257051911|ref|YP_003129744.1|	-	4.4e-49	166.9	0.8	6e-49	166.5	0.5	1.2	1	0	0	1	1	1	1	Carbohydrate	kinase
YjeF_N	PF03853.10	gi|257051911|ref|YP_003129744.1|	-	1.2e-42	145.3	0.4	1.2e-42	145.3	0.3	1.9	2	0	0	2	2	2	1	YjeF-related	protein	N-terminus
HK	PF02110.10	gi|257051911|ref|YP_003129744.1|	-	4.4e-07	29.3	0.0	8e-07	28.4	0.0	1.3	1	0	0	1	1	1	1	Hydroxyethylthiazole	kinase	family
4HBT	PF03061.17	gi|257051912|ref|YP_003129745.1|	-	7.6e-18	64.4	0.0	1e-17	64.0	0.0	1.2	1	0	0	1	1	1	1	Thioesterase	superfamily
4HBT_2	PF13279.1	gi|257051912|ref|YP_003129745.1|	-	0.0053	17.2	0.0	0.0063	16.9	0.0	1.1	1	0	0	1	1	1	1	Thioesterase-like	superfamily
MMR_HSR1	PF01926.18	gi|257051913|ref|YP_003129746.1|	-	2.6e-18	66.0	0.0	1.9e-17	63.2	0.0	2.2	2	0	0	2	2	2	1	50S	ribosome-binding	GTPase
GTP_EFTU	PF00009.22	gi|257051913|ref|YP_003129746.1|	-	1e-12	47.9	0.0	2.8e-11	43.2	0.0	2.5	2	1	0	2	2	2	1	Elongation	factor	Tu	GTP	binding	domain
GTP-bdg_N	PF13167.1	gi|257051913|ref|YP_003129746.1|	-	2e-10	40.6	0.0	5e-10	39.3	0.0	1.7	1	0	0	1	1	1	1	GTP-binding	GTPase	N-terminal
cobW	PF02492.14	gi|257051913|ref|YP_003129746.1|	-	2.2e-06	27.2	0.1	0.00046	19.6	0.0	2.4	1	1	1	2	2	2	1	CobW/HypB/UreG,	nucleotide-binding	domain
FeoB_N	PF02421.13	gi|257051913|ref|YP_003129746.1|	-	5.1e-05	22.5	0.1	0.04	13.1	0.0	2.7	3	0	0	3	3	3	2	Ferrous	iron	transport	protein	B
Miro	PF08477.8	gi|257051913|ref|YP_003129746.1|	-	0.00039	20.8	0.0	0.0039	17.6	0.0	2.5	2	1	0	2	2	2	1	Miro-like	protein
Arf	PF00025.16	gi|257051913|ref|YP_003129746.1|	-	0.00064	19.0	0.5	0.65	9.2	0.0	2.8	2	1	1	3	3	3	2	ADP-ribosylation	factor	family
AAA_18	PF13238.1	gi|257051913|ref|YP_003129746.1|	-	0.00067	19.9	0.0	0.00067	19.9	0.0	2.6	3	1	0	4	4	2	1	AAA	domain
AAA_17	PF13207.1	gi|257051913|ref|YP_003129746.1|	-	0.0011	19.7	2.7	0.0047	17.7	0.0	2.9	2	2	0	2	2	2	1	AAA	domain
PduV-EutP	PF10662.4	gi|257051913|ref|YP_003129746.1|	-	0.0049	16.3	0.0	0.28	10.6	0.0	2.3	2	0	0	2	2	2	1	Ethanolamine	utilisation	-	propanediol	utilisation
DUF1949	PF09186.6	gi|257051913|ref|YP_003129746.1|	-	0.021	14.4	0.4	0.5	10.0	0.1	3.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1949)
ABC_tran	PF00005.22	gi|257051913|ref|YP_003129746.1|	-	0.021	15.1	0.0	0.082	13.2	0.0	2.1	1	1	1	2	2	2	0	ABC	transporter
MobB	PF03205.9	gi|257051913|ref|YP_003129746.1|	-	0.024	14.3	0.0	0.06	13.0	0.0	1.9	1	1	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
ArgK	PF03308.11	gi|257051913|ref|YP_003129746.1|	-	0.031	13.0	0.6	21	3.7	0.0	3.6	3	1	1	4	4	4	0	ArgK	protein
AAA_16	PF13191.1	gi|257051913|ref|YP_003129746.1|	-	0.039	13.9	1.1	0.13	12.2	0.1	2.5	1	1	1	2	2	2	0	AAA	ATPase	domain
AAA_14	PF13173.1	gi|257051913|ref|YP_003129746.1|	-	0.042	13.7	0.0	0.15	11.9	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
DUF258	PF03193.11	gi|257051913|ref|YP_003129746.1|	-	0.046	12.9	0.0	0.29	10.3	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function,	DUF258
Dynamin_N	PF00350.18	gi|257051913|ref|YP_003129746.1|	-	0.067	13.0	0.2	8.8	6.1	0.0	2.8	2	1	1	3	3	3	0	Dynamin	family
Syntaxin	PF00804.20	gi|257051913|ref|YP_003129746.1|	-	0.1	12.7	0.6	0.39	10.8	0.4	2.0	1	0	0	1	1	1	0	Syntaxin
AAA_22	PF13401.1	gi|257051913|ref|YP_003129746.1|	-	0.12	12.5	0.0	0.43	10.7	0.0	2.1	2	1	0	2	2	1	0	AAA	domain
AAA_33	PF13671.1	gi|257051913|ref|YP_003129746.1|	-	0.14	12.0	1.7	0.29	11.0	0.0	2.5	2	2	0	2	2	2	0	AAA	domain
AAA_23	PF13476.1	gi|257051913|ref|YP_003129746.1|	-	3.3	8.0	6.2	16	5.7	0.0	2.5	2	1	1	3	3	3	0	AAA	domain
PIN	PF01850.16	gi|257051914|ref|YP_003129747.1|	-	2.1e-09	37.7	0.3	2.5e-09	37.5	0.2	1.0	1	0	0	1	1	1	1	PIN	domain
ThiW	PF09512.5	gi|257051914|ref|YP_003129747.1|	-	0.12	12.1	0.0	0.16	11.7	0.0	1.1	1	0	0	1	1	1	0	Thiamine-precursor	transporter	protein	(ThiW)
HTH_11	PF08279.7	gi|257051915|ref|YP_003129748.1|	-	5.1e-06	26.0	0.0	7.4e-06	25.5	0.0	1.2	1	0	0	1	1	1	1	HTH	domain
HTH_20	PF12840.2	gi|257051915|ref|YP_003129748.1|	-	4.9e-05	23.0	0.0	0.0001	22.0	0.0	1.5	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|257051915|ref|YP_003129748.1|	-	0.0021	17.4	0.0	0.003	16.9	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.14	gi|257051915|ref|YP_003129748.1|	-	0.0026	17.4	0.0	0.0042	16.7	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_23	PF13384.1	gi|257051915|ref|YP_003129748.1|	-	0.011	15.3	0.0	0.017	14.7	0.0	1.2	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_Mga	PF08280.6	gi|257051915|ref|YP_003129748.1|	-	0.012	15.3	0.0	0.016	14.9	0.0	1.2	1	0	0	1	1	1	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
HTH_Crp_2	PF13545.1	gi|257051915|ref|YP_003129748.1|	-	0.016	14.9	0.0	0.021	14.6	0.0	1.2	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
MarR_2	PF12802.2	gi|257051915|ref|YP_003129748.1|	-	0.02	14.5	0.1	0.029	14.0	0.1	1.2	1	0	0	1	1	1	0	MarR	family
HTH_36	PF13730.1	gi|257051915|ref|YP_003129748.1|	-	0.026	14.6	0.0	0.036	14.2	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_27	PF13463.1	gi|257051915|ref|YP_003129748.1|	-	0.027	14.8	0.1	0.042	14.1	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Rrf2	PF02082.15	gi|257051915|ref|YP_003129748.1|	-	0.035	14.2	0.0	0.049	13.7	0.0	1.2	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_17	PF12728.2	gi|257051915|ref|YP_003129748.1|	-	0.071	13.3	0.0	0.16	12.2	0.0	1.6	1	1	0	1	1	1	0	Helix-turn-helix	domain
GerE	PF00196.14	gi|257051915|ref|YP_003129748.1|	-	0.098	11.9	0.0	0.17	11.2	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
Fe_dep_repress	PF01325.14	gi|257051915|ref|YP_003129748.1|	-	0.11	12.4	0.0	0.16	11.9	0.0	1.2	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
ThuA	PF06283.6	gi|257051916|ref|YP_003129749.1|	-	6.6e-36	124.0	0.0	7.5e-36	123.8	0.0	1.0	1	0	0	1	1	1	1	Trehalose	utilisation
Rib_5-P_isom_A	PF06026.9	gi|257051917|ref|YP_003129750.1|	-	4.3e-50	169.4	0.3	5.2e-50	169.1	0.2	1.1	1	0	0	1	1	1	1	Ribose	5-phosphate	isomerase	A	(phosphoriboisomerase	A)
DeoRC	PF00455.17	gi|257051917|ref|YP_003129750.1|	-	2e-05	24.2	0.1	3.9e-05	23.3	0.1	1.5	1	0	0	1	1	1	1	DeoR	C	terminal	sensor	domain
Sugar-bind	PF04198.8	gi|257051917|ref|YP_003129750.1|	-	0.093	11.6	0.0	0.12	11.1	0.0	1.2	1	0	0	1	1	1	0	Putative	sugar-binding	domain
Ribul_P_3_epim	PF00834.14	gi|257051918|ref|YP_003129751.1|	-	1.5e-66	223.3	0.0	1.8e-66	223.1	0.0	1.0	1	0	0	1	1	1	1	Ribulose-phosphate	3	epimerase	family
His_biosynth	PF00977.16	gi|257051918|ref|YP_003129751.1|	-	6.1e-05	22.4	0.1	0.0062	15.8	0.0	2.4	2	1	0	2	2	2	2	Histidine	biosynthesis	protein
TMP-TENI	PF02581.12	gi|257051918|ref|YP_003129751.1|	-	0.052	12.6	0.0	0.067	12.2	0.0	1.2	1	0	0	1	1	1	0	Thiamine	monophosphate	synthase/TENI
Trp_syntA	PF00290.15	gi|257051918|ref|YP_003129751.1|	-	0.12	10.9	0.0	0.16	10.4	0.0	1.2	1	0	0	1	1	1	0	Tryptophan	synthase	alpha	chain
Pribosyltran	PF00156.22	gi|257051919|ref|YP_003129752.1|	-	4.4e-11	42.6	0.0	4.1e-10	39.4	0.0	2.3	2	0	0	2	2	2	1	Phosphoribosyl	transferase	domain
Pribosyltran_N	PF13793.1	gi|257051919|ref|YP_003129752.1|	-	8.6e-09	35.1	0.0	8.2e-08	31.9	0.0	2.2	2	0	0	2	2	2	1	N-terminal	domain	of	ribose	phosphate	pyrophosphokinase
UPRTase	PF14681.1	gi|257051919|ref|YP_003129752.1|	-	8.2e-07	28.4	0.1	1.2e-06	27.8	0.0	1.3	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
PRTase_2	PF15609.1	gi|257051919|ref|YP_003129752.1|	-	3.9e-06	26.2	0.1	0.00025	20.4	0.0	2.3	1	1	0	1	1	1	1	Phosphoribosyl	transferase
Pribosyl_synth	PF14572.1	gi|257051919|ref|YP_003129752.1|	-	0.00071	19.3	0.3	0.0012	18.6	0.2	1.2	1	0	0	1	1	1	1	Phosphoribosyl	synthetase-associated	domain
Pyr_redox_2	PF07992.9	gi|257051920|ref|YP_003129753.1|	-	5.2e-22	78.7	0.0	1.3e-21	77.4	0.0	1.6	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|257051920|ref|YP_003129753.1|	-	1.6e-08	33.8	3.6	0.00039	19.4	2.0	2.2	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.1	gi|257051920|ref|YP_003129753.1|	-	2.1e-07	31.2	0.2	0.0004	20.5	0.0	2.4	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.2	gi|257051920|ref|YP_003129753.1|	-	1.5e-05	24.2	3.7	2.4e-05	23.5	2.6	1.3	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.9	gi|257051920|ref|YP_003129753.1|	-	2.2e-05	23.1	0.2	0.0049	15.4	0.9	2.1	2	0	0	2	2	2	2	HI0933-like	protein
GIDA	PF01134.17	gi|257051920|ref|YP_003129753.1|	-	2.7e-05	23.2	0.7	5.9e-05	22.0	0.4	1.6	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
Pyr_redox	PF00070.22	gi|257051920|ref|YP_003129753.1|	-	3.5e-05	24.1	2.1	0.1	13.0	0.6	2.5	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.19	gi|257051920|ref|YP_003129753.1|	-	3.6e-05	22.7	8.6	0.0001	21.2	1.9	2.8	2	1	1	3	3	3	1	FAD	binding	domain
Thi4	PF01946.12	gi|257051920|ref|YP_003129753.1|	-	0.0014	17.7	0.1	0.0025	16.9	0.1	1.4	1	0	0	1	1	1	1	Thi4	family
NAD_binding_8	PF13450.1	gi|257051920|ref|YP_003129753.1|	-	0.0028	17.6	0.3	0.0066	16.4	0.2	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
AlaDh_PNT_C	PF01262.16	gi|257051920|ref|YP_003129753.1|	-	0.0036	16.8	0.1	0.0068	15.9	0.1	1.4	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
FAD_binding_3	PF01494.14	gi|257051920|ref|YP_003129753.1|	-	0.0037	16.3	0.7	0.0054	15.8	0.5	1.2	1	0	0	1	1	1	1	FAD	binding	domain
NAD_binding_9	PF13454.1	gi|257051920|ref|YP_003129753.1|	-	0.015	15.0	0.4	0.63	9.7	0.0	2.7	3	0	0	3	3	3	0	FAD-NAD(P)-binding
Trp_halogenase	PF04820.9	gi|257051920|ref|YP_003129753.1|	-	0.078	11.5	1.0	0.19	10.3	0.3	1.9	2	0	0	2	2	2	0	Tryptophan	halogenase
Lycopene_cycl	PF05834.7	gi|257051920|ref|YP_003129753.1|	-	0.086	11.7	0.6	0.13	11.1	0.4	1.2	1	0	0	1	1	1	0	Lycopene	cyclase	protein
AhpC-TSA	PF00578.16	gi|257051921|ref|YP_003129754.1|	-	2.7e-14	52.8	0.0	3.8e-14	52.4	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.5	gi|257051921|ref|YP_003129754.1|	-	2e-07	30.6	0.0	2.5e-07	30.3	0.0	1.1	1	0	0	1	1	1	1	Redoxin
Thioredoxin_8	PF13905.1	gi|257051921|ref|YP_003129754.1|	-	0.017	15.2	0.0	0.026	14.6	0.0	1.3	1	0	0	1	1	1	0	Thioredoxin-like
Thioredoxin_2	PF13098.1	gi|257051921|ref|YP_003129754.1|	-	0.035	14.3	0.0	0.045	13.9	0.0	1.2	1	0	0	1	1	1	0	Thioredoxin-like	domain
DUF2004	PF09406.5	gi|257051924|ref|YP_003129757.1|	-	0.092	12.8	0.1	0.14	12.1	0.0	1.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2004)
Pyr_redox_2	PF07992.9	gi|257051925|ref|YP_003129758.1|	-	3.5e-33	115.1	0.9	4.8e-33	114.7	0.7	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.17	gi|257051925|ref|YP_003129758.1|	-	1e-23	83.4	0.2	2e-23	82.4	0.1	1.5	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox	PF00070.22	gi|257051925|ref|YP_003129758.1|	-	3.1e-16	59.5	5.7	9.5e-15	54.7	0.2	2.5	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|257051925|ref|YP_003129758.1|	-	6.8e-06	26.2	0.0	9.1e-05	22.5	0.0	2.2	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.17	gi|257051925|ref|YP_003129758.1|	-	1.2e-05	24.3	2.3	1.2e-05	24.3	1.6	2.1	2	1	0	2	2	2	1	Glucose	inhibited	division	protein	A
FAD_oxidored	PF12831.2	gi|257051925|ref|YP_003129758.1|	-	0.00037	19.6	1.3	0.0006	19.0	0.9	1.3	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.19	gi|257051925|ref|YP_003129758.1|	-	0.001	17.9	0.9	0.001	17.9	0.6	2.0	4	0	0	4	4	4	1	FAD	binding	domain
3HCDH_N	PF02737.13	gi|257051925|ref|YP_003129758.1|	-	0.0027	17.3	0.9	1.5	8.4	0.1	2.3	2	0	0	2	2	2	2	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Multi_ubiq	PF14452.1	gi|257051925|ref|YP_003129758.1|	-	0.0089	15.9	0.0	0.13	12.2	0.0	2.5	2	0	0	2	2	2	1	Multiubiquitin
K_oxygenase	PF13434.1	gi|257051925|ref|YP_003129758.1|	-	0.025	13.5	0.1	0.056	12.3	0.0	1.6	2	0	0	2	2	2	0	L-lysine	6-monooxygenase	(NADPH-requiring)
XdhC_C	PF13478.1	gi|257051925|ref|YP_003129758.1|	-	0.071	13.4	0.0	0.39	11.0	0.0	2.1	2	0	0	2	2	2	0	XdhC	Rossmann	domain
Thi4	PF01946.12	gi|257051925|ref|YP_003129758.1|	-	0.078	12.0	0.4	0.36	9.8	0.0	2.2	2	0	0	2	2	2	0	Thi4	family
DAO	PF01266.19	gi|257051925|ref|YP_003129758.1|	-	0.12	11.2	17.8	0.016	14.1	1.2	3.6	3	1	1	4	4	4	0	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.1	gi|257051925|ref|YP_003129758.1|	-	0.19	11.7	1.9	9	6.4	0.3	2.6	2	0	0	2	2	2	0	NAD(P)-binding	Rossmann-like	domain
HI0933_like	PF03486.9	gi|257051925|ref|YP_003129758.1|	-	0.52	8.7	2.0	0.43	8.9	0.1	1.8	3	0	0	3	3	3	0	HI0933-like	protein
HxlR	PF01638.12	gi|257051926|ref|YP_003129759.1|	-	3.1e-25	87.6	0.0	3.9e-25	87.3	0.0	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
PadR	PF03551.9	gi|257051926|ref|YP_003129759.1|	-	0.0076	16.0	0.0	0.015	15.0	0.0	1.5	2	0	0	2	2	2	1	Transcriptional	regulator	PadR-like	family
HTH_5	PF01022.15	gi|257051926|ref|YP_003129759.1|	-	0.034	13.7	0.2	0.057	13.0	0.1	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_34	PF13601.1	gi|257051926|ref|YP_003129759.1|	-	0.08	12.9	0.0	0.11	12.5	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF3429	PF11911.3	gi|257051928|ref|YP_003129761.1|	-	0.45	10.4	7.9	0.083	12.8	2.4	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3429)
DUF3040	PF11239.3	gi|257051928|ref|YP_003129761.1|	-	1.6	8.7	7.9	1.5	8.9	1.2	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3040)
DUF308	PF03729.8	gi|257051928|ref|YP_003129761.1|	-	3.7	7.6	13.2	0.12	12.3	1.7	2.5	3	0	0	3	3	3	0	Short	repeat	of	unknown	function	(DUF308)
PIRT	PF15099.1	gi|257051928|ref|YP_003129761.1|	-	3.7	6.7	5.3	0.57	9.4	0.6	1.8	2	0	0	2	2	2	0	Phosphoinositide-interacting	protein	family
CopD	PF05425.8	gi|257051928|ref|YP_003129761.1|	-	5.8	7.1	15.0	3.3	7.9	0.4	2.5	2	1	1	3	3	3	0	Copper	resistance	protein	D
TauE	PF01925.14	gi|257051929|ref|YP_003129762.1|	-	5.1e-21	75.2	38.5	6e-21	74.9	26.7	1.0	1	0	0	1	1	1	1	Sulfite	exporter	TauE/SafE
HTH_IclR	PF09339.5	gi|257051930|ref|YP_003129763.1|	-	3.8e-06	26.3	0.0	1.1e-05	24.9	0.0	1.7	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
TrmB	PF01978.14	gi|257051930|ref|YP_003129763.1|	-	0.00027	20.5	0.0	0.00057	19.5	0.0	1.6	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.2	gi|257051930|ref|YP_003129763.1|	-	0.00033	20.3	0.0	0.00068	19.3	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|257051930|ref|YP_003129763.1|	-	0.00034	20.2	0.0	0.00067	19.2	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.15	gi|257051930|ref|YP_003129763.1|	-	0.00074	19.1	0.0	0.0013	18.3	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_27	PF13463.1	gi|257051930|ref|YP_003129763.1|	-	0.0013	19.0	0.0	0.003	17.8	0.0	1.6	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_24	PF13412.1	gi|257051930|ref|YP_003129763.1|	-	0.0026	17.1	0.0	0.0056	16.0	0.0	1.6	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
Desulfoferrod_N	PF06397.7	gi|257051930|ref|YP_003129763.1|	-	0.0039	16.5	0.5	0.0066	15.7	0.4	1.4	1	0	0	1	1	1	1	Desulfoferrodoxin,	N-terminal	domain
HTH_36	PF13730.1	gi|257051930|ref|YP_003129763.1|	-	0.03	14.4	0.0	0.052	13.6	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_DeoR	PF08220.7	gi|257051930|ref|YP_003129763.1|	-	0.045	13.2	0.0	0.076	12.5	0.0	1.3	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
DUF742	PF05331.6	gi|257051930|ref|YP_003129763.1|	-	0.081	12.5	0.0	0.17	11.4	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF742)
TFIIE_alpha	PF02002.12	gi|257051930|ref|YP_003129763.1|	-	0.14	11.7	0.0	0.21	11.1	0.0	1.3	1	0	0	1	1	1	0	TFIIE	alpha	subunit
HTH_40	PF14493.1	gi|257051930|ref|YP_003129763.1|	-	0.15	12.2	0.0	0.48	10.6	0.0	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain
HrcA_DNA-bdg	PF03444.10	gi|257051931|ref|YP_003129764.1|	-	0.0029	17.0	0.0	0.004	16.5	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
HTH_20	PF12840.2	gi|257051931|ref|YP_003129764.1|	-	0.028	14.2	0.0	0.034	13.9	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
CMD	PF02627.15	gi|257051934|ref|YP_003129767.1|	-	1.7e-09	37.3	0.2	1e-08	34.9	0.0	2.0	1	1	1	2	2	2	1	Carboxymuconolactone	decarboxylase	family
DUF3500	PF12006.3	gi|257051934|ref|YP_003129767.1|	-	0.064	12.1	0.0	0.086	11.7	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3500)
TauE	PF01925.14	gi|257051935|ref|YP_003129768.1|	-	3e-34	118.5	23.4	3e-34	118.5	16.2	1.3	1	1	0	1	1	1	1	Sulfite	exporter	TauE/SafE
Cas_Cas02710	PF09670.5	gi|257051936|ref|YP_003129769.1|	-	0.0034	16.0	0.1	0.0046	15.6	0.1	1.1	1	0	0	1	1	1	1	CRISPR-associated	protein	(Cas_Cas02710)
adh_short	PF00106.20	gi|257051936|ref|YP_003129769.1|	-	0.28	11.0	5.0	0.11	12.3	1.7	1.7	2	0	0	2	2	2	0	short	chain	dehydrogenase
IncA	PF04156.9	gi|257051937|ref|YP_003129770.1|	-	0.14	11.7	0.2	0.14	11.7	0.1	1.1	1	0	0	1	1	1	0	IncA	protein
adh_short	PF00106.20	gi|257051938|ref|YP_003129771.1|	-	6.5e-22	78.2	1.0	9.2e-22	77.7	0.7	1.2	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.1	gi|257051938|ref|YP_003129771.1|	-	5.4e-08	32.8	0.0	8.3e-08	32.2	0.0	1.2	1	1	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.5	gi|257051938|ref|YP_003129771.1|	-	3.5e-06	26.8	1.1	8.4e-06	25.5	0.8	1.7	1	1	0	1	1	1	1	KR	domain
Epimerase	PF01370.16	gi|257051938|ref|YP_003129771.1|	-	3.5e-05	23.3	0.0	5.9e-05	22.6	0.0	1.3	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
Eno-Rase_NADH_b	PF12242.3	gi|257051938|ref|YP_003129771.1|	-	0.0002	21.0	0.3	0.00046	19.9	0.2	1.5	1	0	0	1	1	1	1	NAD(P)H	binding	domain	of	trans-2-enoyl-CoA	reductase
HHH_5	PF14520.1	gi|257051938|ref|YP_003129771.1|	-	0.052	13.7	0.1	0.13	12.4	0.1	1.8	1	1	0	1	1	1	0	Helix-hairpin-helix	domain
3HCDH_N	PF02737.13	gi|257051938|ref|YP_003129771.1|	-	1.2	8.7	3.6	13	5.3	2.5	2.1	1	1	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_10	PF13460.1	gi|257051938|ref|YP_003129771.1|	-	1.2	9.0	4.5	4.2	7.3	3.1	1.9	1	1	0	1	1	1	0	NADH(P)-binding
Patatin	PF01734.17	gi|257051939|ref|YP_003129772.1|	-	3.8e-15	56.3	1.5	1.1e-13	51.5	1.0	2.1	1	1	0	1	1	1	1	Patatin-like	phospholipase
TIM	PF00121.13	gi|257051940|ref|YP_003129773.1|	-	5e-11	42.1	0.0	6.9e-10	38.3	0.0	1.9	1	1	1	2	2	2	1	Triosephosphate	isomerase
His_biosynth	PF00977.16	gi|257051940|ref|YP_003129773.1|	-	0.00031	20.0	0.1	0.0024	17.1	0.0	2.0	2	0	0	2	2	2	1	Histidine	biosynthesis	protein
ThiG	PF05690.9	gi|257051940|ref|YP_003129773.1|	-	0.0011	18.1	0.5	0.002	17.2	0.3	1.4	1	0	0	1	1	1	1	Thiazole	biosynthesis	protein	ThiG
Ribul_P_3_epim	PF00834.14	gi|257051940|ref|YP_003129773.1|	-	0.013	14.6	0.2	0.087	11.9	0.1	2.0	1	1	0	1	1	1	0	Ribulose-phosphate	3	epimerase	family
Aldo_ket_red	PF00248.16	gi|257051941|ref|YP_003129774.1|	-	3.2e-59	200.0	0.0	3.8e-59	199.8	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
Transaldolase	PF00923.14	gi|257051942|ref|YP_003129775.1|	-	1.5e-54	185.1	0.0	3.6e-54	183.8	0.0	1.5	1	1	0	1	1	1	1	Transaldolase
Transketolase_C	PF02780.15	gi|257051943|ref|YP_003129776.1|	-	9.3e-34	116.0	1.6	1.2e-33	115.6	0.2	1.9	2	1	0	2	2	2	1	Transketolase,	C-terminal	domain
Transket_pyr	PF02779.19	gi|257051943|ref|YP_003129776.1|	-	2.5e-33	115.0	0.0	4.5e-33	114.2	0.0	1.4	1	0	0	1	1	1	1	Transketolase,	pyrimidine	binding	domain
Transketolase_N	PF00456.16	gi|257051944|ref|YP_003129777.1|	-	2.2e-54	184.4	0.0	3e-54	184.0	0.0	1.1	1	0	0	1	1	1	1	Transketolase,	thiamine	diphosphate	binding	domain
DXP_synthase_N	PF13292.1	gi|257051944|ref|YP_003129777.1|	-	1.6e-13	50.2	0.0	7.8e-10	38.1	0.0	2.6	1	1	1	2	2	2	2	1-deoxy-D-xylulose-5-phosphate	synthase
XFP_N	PF09364.5	gi|257051944|ref|YP_003129777.1|	-	2e-07	29.9	0.1	6.1e-07	28.3	0.0	1.8	3	0	0	3	3	3	1	XFP	N-terminal	domain
E1_dh	PF00676.15	gi|257051944|ref|YP_003129777.1|	-	4.6e-07	28.8	0.0	6.8e-07	28.3	0.0	1.1	1	0	0	1	1	1	1	Dehydrogenase	E1	component
TPP_enzyme_C	PF02775.16	gi|257051944|ref|YP_003129777.1|	-	9.9e-06	25.2	0.0	0.0002	20.9	0.0	2.2	1	1	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
SBP_bac_8	PF13416.1	gi|257051945|ref|YP_003129778.1|	-	1.5e-19	70.8	1.0	1.9e-19	70.5	0.7	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.20	gi|257051945|ref|YP_003129778.1|	-	3e-10	40.3	1.7	4.5e-10	39.7	1.2	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.1	gi|257051945|ref|YP_003129778.1|	-	0.018	14.6	1.0	0.13	11.8	0.7	2.2	1	1	0	1	1	1	0	Bacterial	extracellular	solute-binding	protein
Glyco_hydro_4	PF02056.11	gi|257051946|ref|YP_003129779.1|	-	1.5e-43	148.2	0.0	2.1e-43	147.7	0.0	1.2	1	0	0	1	1	1	1	Family	4	glycosyl	hydrolase
Glyco_hydro_4C	PF11975.3	gi|257051946|ref|YP_003129779.1|	-	1.8e-26	93.3	0.0	4e-26	92.2	0.0	1.7	1	1	0	1	1	1	1	Family	4	glycosyl	hydrolase	C-terminal	domain
UDPG_MGDP_dh_C	PF03720.10	gi|257051946|ref|YP_003129779.1|	-	0.044	13.9	0.3	0.65	10.1	0.1	2.5	2	0	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
Ldh_1_N	PF00056.18	gi|257051946|ref|YP_003129779.1|	-	0.071	12.9	0.3	0.93	9.3	0.0	2.7	3	0	0	3	3	3	0	lactate/malate	dehydrogenase,	NAD	binding	domain
Rrf2	PF02082.15	gi|257051948|ref|YP_003129781.1|	-	2.8e-07	30.5	0.0	7.6e-07	29.1	0.0	1.7	2	0	0	2	2	2	1	Transcriptional	regulator
HTH_20	PF12840.2	gi|257051948|ref|YP_003129781.1|	-	0.0013	18.4	0.1	0.0038	16.9	0.0	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
LexA_DNA_bind	PF01726.11	gi|257051948|ref|YP_003129781.1|	-	0.0018	17.7	0.0	0.0036	16.8	0.0	1.4	1	0	0	1	1	1	1	LexA	DNA	binding	domain
HTH_IclR	PF09339.5	gi|257051948|ref|YP_003129781.1|	-	0.011	15.3	0.1	0.13	11.8	0.0	2.3	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
Fe_dep_repr_C	PF02742.10	gi|257051948|ref|YP_003129781.1|	-	0.021	14.5	0.2	0.059	13.0	0.1	1.7	1	0	0	1	1	1	0	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
TrmB	PF01978.14	gi|257051948|ref|YP_003129781.1|	-	0.022	14.4	0.0	0.045	13.4	0.0	1.5	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
SgrR_N	PF12793.2	gi|257051948|ref|YP_003129781.1|	-	0.1	12.6	0.0	0.19	11.7	0.0	1.5	1	1	0	1	1	1	0	Sugar	transport-related	sRNA	regulator	N-term
Ets	PF00178.17	gi|257051949|ref|YP_003129782.1|	-	0.075	13.1	0.0	0.11	12.5	0.0	1.2	1	0	0	1	1	1	0	Ets-domain
Glyco_hydro_3	PF00933.16	gi|257051950|ref|YP_003129783.1|	-	2.4e-80	269.7	0.0	3.1e-80	269.3	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	N	terminal	domain
Glyco_hydro_3_C	PF01915.17	gi|257051950|ref|YP_003129783.1|	-	9.5e-60	201.9	0.0	2e-59	200.8	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	C-terminal	domain
Fn3-like	PF14310.1	gi|257051950|ref|YP_003129783.1|	-	2.8e-21	75.2	0.1	6e-21	74.1	0.0	1.6	1	0	0	1	1	1	1	Fibronectin	type	III-like	domain
CARDB	PF07705.6	gi|257051950|ref|YP_003129783.1|	-	0.077	13.0	0.0	0.17	11.9	0.0	1.5	1	0	0	1	1	1	0	CARDB
adh_short	PF00106.20	gi|257051951|ref|YP_003129784.1|	-	5.9e-32	110.8	0.4	7.4e-32	110.5	0.3	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.1	gi|257051951|ref|YP_003129784.1|	-	4.9e-26	91.9	0.0	6e-26	91.6	0.0	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.5	gi|257051951|ref|YP_003129784.1|	-	1.5e-11	44.3	0.3	2.4e-11	43.6	0.2	1.3	1	0	0	1	1	1	1	KR	domain
Eno-Rase_NADH_b	PF12242.3	gi|257051951|ref|YP_003129784.1|	-	0.0036	17.0	0.0	0.0066	16.2	0.0	1.4	1	0	0	1	1	1	1	NAD(P)H	binding	domain	of	trans-2-enoyl-CoA	reductase
Epimerase	PF01370.16	gi|257051951|ref|YP_003129784.1|	-	0.041	13.2	0.0	0.078	12.4	0.0	1.5	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.14	gi|257051951|ref|YP_003129784.1|	-	0.077	11.6	0.0	0.13	10.9	0.0	1.4	1	0	0	1	1	1	0	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
DFP	PF04127.10	gi|257051951|ref|YP_003129784.1|	-	0.36	10.4	2.0	0.79	9.3	1.4	1.5	1	1	0	1	1	1	0	DNA	/	pantothenate	metabolism	flavoprotein
UxuA	PF03786.8	gi|257051952|ref|YP_003129785.1|	-	2.2e-84	283.0	0.1	6.6e-63	212.3	0.0	2.0	1	1	1	2	2	2	2	D-mannonate	dehydratase	(UxuA)
AP_endonuc_2	PF01261.19	gi|257051952|ref|YP_003129785.1|	-	5.8e-19	68.2	0.1	7.1e-19	67.9	0.0	1.1	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
UxaC	PF02614.9	gi|257051953|ref|YP_003129786.1|	-	2.1e-128	428.8	0.0	2.4e-128	428.6	0.0	1.0	1	0	0	1	1	1	1	Glucuronate	isomerase
DUF2236	PF09995.4	gi|257051953|ref|YP_003129786.1|	-	0.064	12.5	0.2	0.17	11.1	0.0	1.7	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2236)
Glyco_hydro_67M	PF07488.7	gi|257051954|ref|YP_003129787.1|	-	4.3e-126	420.2	0.0	5.6e-126	419.8	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	67	middle	domain
Glyco_hydro_67C	PF07477.7	gi|257051954|ref|YP_003129787.1|	-	4.1e-82	274.9	0.5	6.5e-82	274.2	0.3	1.3	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	67	C-terminus
Glyco_hydro_67N	PF03648.9	gi|257051954|ref|YP_003129787.1|	-	8.9e-24	83.8	0.0	1.3e-23	83.2	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	67	N-terminus
Mut7-C	PF01927.11	gi|257051955|ref|YP_003129788.1|	-	2.3e-44	150.9	0.0	2.5e-44	150.7	0.0	1.0	1	0	0	1	1	1	1	Mut7-C	RNAse	domain
zf-trcl	PF13451.1	gi|257051955|ref|YP_003129788.1|	-	0.088	12.4	0.3	7.3	6.3	0.1	2.3	2	0	0	2	2	2	0	Probable	zinc-binding	domain
Penicillinase_R	PF03965.11	gi|257051956|ref|YP_003129789.1|	-	0.042	13.9	0.0	0.07	13.2	0.0	1.4	1	0	0	1	1	1	0	Penicillinase	repressor
KfrA_N	PF11740.3	gi|257051956|ref|YP_003129789.1|	-	0.11	12.9	0.7	0.17	12.3	0.0	1.8	2	0	0	2	2	2	0	Plasmid	replication	region	DNA-binding	N-term
DctQ	PF04290.7	gi|257051958|ref|YP_003129791.1|	-	4.3	7.1	14.2	5.1	6.8	0.3	2.8	2	1	1	3	3	3	0	Tripartite	ATP-independent	periplasmic	transporters,	DctQ	component
Tetraspannin	PF00335.15	gi|257051958|ref|YP_003129791.1|	-	6.5	5.9	7.2	0.51	9.5	0.2	2.2	2	1	0	2	2	2	0	Tetraspanin	family
Claudin_2	PF13903.1	gi|257051959|ref|YP_003129792.1|	-	1.7	8.3	11.7	2.3	7.8	0.7	2.0	1	1	1	2	2	2	0	PMP-22/EMP/MP20/Claudin	tight	junction
DUF2976	PF11190.3	gi|257051959|ref|YP_003129792.1|	-	4.8	6.7	6.6	16	5.0	4.2	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2976)
DUF4131	PF13567.1	gi|257051960|ref|YP_003129793.1|	-	0.027	13.8	0.0	0.03	13.7	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
HAMP	PF00672.20	gi|257051960|ref|YP_003129793.1|	-	0.039	14.1	1.5	0.082	13.1	0.0	2.0	2	0	0	2	2	2	0	HAMP	domain
DUF4010	PF13194.1	gi|257051960|ref|YP_003129793.1|	-	0.044	13.0	0.0	0.05	12.8	0.0	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4010)
NUDIX	PF00293.23	gi|257051961|ref|YP_003129794.1|	-	9.2e-17	60.9	0.3	1.4e-16	60.3	0.2	1.2	1	0	0	1	1	1	1	NUDIX	domain
Ribosomal_S10	PF00338.17	gi|257051962|ref|YP_003129795.1|	-	1.9e-13	50.0	0.0	2.2e-13	49.8	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S10p/S20e
Peptidase_M20	PF01546.23	gi|257051963|ref|YP_003129796.1|	-	6.8e-19	68.1	18.8	1.3e-18	67.1	13.1	1.5	1	1	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.9	gi|257051963|ref|YP_003129796.1|	-	1.6e-10	40.6	0.4	3.3e-10	39.7	0.3	1.5	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
DAO	PF01266.19	gi|257051964|ref|YP_003129797.1|	-	7.2e-14	51.4	4.1	3.7e-06	26.0	0.1	2.5	2	1	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.19	gi|257051964|ref|YP_003129797.1|	-	2.1e-11	43.3	10.1	4.9e-07	28.9	1.2	2.5	3	0	0	3	3	3	2	FAD	binding	domain
FAD_oxidored	PF12831.2	gi|257051964|ref|YP_003129797.1|	-	3.4e-10	39.6	4.8	2.1e-09	36.9	3.3	2.1	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.14	gi|257051964|ref|YP_003129797.1|	-	4.1e-10	39.2	3.7	0.00025	20.1	0.2	2.4	2	1	0	2	2	2	2	FAD	binding	domain
Trp_halogenase	PF04820.9	gi|257051964|ref|YP_003129797.1|	-	2.1e-09	36.5	1.7	4.2e-07	28.9	0.0	2.3	2	0	0	2	2	2	2	Tryptophan	halogenase
Thi4	PF01946.12	gi|257051964|ref|YP_003129797.1|	-	4.4e-06	25.9	2.7	1.8e-05	23.9	0.5	2.2	2	0	0	2	2	2	1	Thi4	family
NAD_binding_8	PF13450.1	gi|257051964|ref|YP_003129797.1|	-	5.2e-06	26.3	5.3	1e-05	25.4	0.2	2.6	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
GIDA	PF01134.17	gi|257051964|ref|YP_003129797.1|	-	5.9e-06	25.3	0.3	8.6e-06	24.8	0.2	1.4	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
HI0933_like	PF03486.9	gi|257051964|ref|YP_003129797.1|	-	5e-05	21.9	0.7	0.00079	17.9	0.4	2.2	2	0	0	2	2	2	1	HI0933-like	protein
Pyr_redox_2	PF07992.9	gi|257051964|ref|YP_003129797.1|	-	0.00016	21.5	0.1	0.00016	21.5	0.1	1.9	2	0	0	2	2	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|257051964|ref|YP_003129797.1|	-	0.00018	21.8	10.0	0.0002	21.6	0.7	2.7	3	0	0	3	3	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|257051964|ref|YP_003129797.1|	-	0.00045	20.3	0.1	0.0012	18.9	0.0	1.8	2	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Lycopene_cycl	PF05834.7	gi|257051964|ref|YP_003129797.1|	-	0.0026	16.7	2.8	0.094	11.6	0.3	2.8	3	0	0	3	3	3	1	Lycopene	cyclase	protein
3HCDH_N	PF02737.13	gi|257051964|ref|YP_003129797.1|	-	0.0051	16.4	0.1	0.0093	15.6	0.1	1.4	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ApbA	PF02558.11	gi|257051964|ref|YP_003129797.1|	-	0.016	14.6	0.0	0.029	13.8	0.0	1.4	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
Shikimate_DH	PF01488.15	gi|257051964|ref|YP_003129797.1|	-	0.049	13.7	0.1	0.29	11.2	0.1	2.2	2	1	0	2	2	2	0	Shikimate	/	quinate	5-dehydrogenase
AlaDh_PNT_C	PF01262.16	gi|257051964|ref|YP_003129797.1|	-	0.12	11.9	1.0	0.2	11.1	0.3	1.7	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
GMC_oxred_N	PF00732.14	gi|257051964|ref|YP_003129797.1|	-	0.16	11.0	0.1	7.1	5.6	0.0	2.2	2	0	0	2	2	2	0	GMC	oxidoreductase
Fer2	PF00111.22	gi|257051965|ref|YP_003129798.1|	-	1.4e-11	43.9	1.9	2e-11	43.4	1.3	1.3	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_3	PF13085.1	gi|257051965|ref|YP_003129798.1|	-	0.0014	18.4	0.1	0.0017	18.1	0.1	1.2	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
DHODB_Fe-S_bind	PF10418.4	gi|257051965|ref|YP_003129798.1|	-	0.12	11.8	0.8	0.23	10.9	0.2	1.7	2	0	0	2	2	2	0	Iron-sulfur	cluster	binding	domain	of	dihydroorotate	dehydrogenase	B
PQQ_2	PF13360.1	gi|257051966|ref|YP_003129799.1|	-	1.7e-31	109.4	6.5	2.7e-16	59.7	1.5	3.4	1	1	2	3	3	3	3	PQQ-like	domain
PQQ_3	PF13570.1	gi|257051966|ref|YP_003129799.1|	-	2.1e-16	59.5	23.9	8.7e-05	22.6	0.0	8.1	8	0	0	8	8	8	5	PQQ-like	domain
PQQ	PF01011.16	gi|257051966|ref|YP_003129799.1|	-	6.8e-12	44.2	4.4	0.0064	15.9	0.0	7.6	8	0	0	8	8	8	4	PQQ	enzyme	repeat
PQQ_2	PF13360.1	gi|257051967|ref|YP_003129800.1|	-	2.5e-30	105.6	6.1	1.3e-16	60.7	1.4	3.7	1	1	3	4	4	4	3	PQQ-like	domain
PQQ	PF01011.16	gi|257051967|ref|YP_003129800.1|	-	1.7e-17	62.0	7.4	0.00032	20.0	0.1	6.2	6	0	0	6	6	6	4	PQQ	enzyme	repeat
PQQ_3	PF13570.1	gi|257051967|ref|YP_003129800.1|	-	9.2e-15	54.3	24.8	1.1e-06	28.6	0.4	6.8	7	1	0	7	7	7	4	PQQ-like	domain
PLDc	PF00614.17	gi|257051967|ref|YP_003129800.1|	-	0.04	13.7	0.4	0.14	12.0	0.0	2.2	2	0	0	2	2	2	0	Phospholipase	D	Active	site	motif
Pyr_redox_2	PF07992.9	gi|257051968|ref|YP_003129801.1|	-	5.8e-21	75.2	0.2	1.1e-20	74.3	0.1	1.6	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|257051968|ref|YP_003129801.1|	-	6.5e-11	42.4	0.2	4.8e-09	36.4	0.0	2.6	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.17	gi|257051968|ref|YP_003129801.1|	-	1.3e-08	34.8	0.0	2.5e-08	33.9	0.0	1.4	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox_3	PF13738.1	gi|257051968|ref|YP_003129801.1|	-	8.3e-06	25.9	0.1	0.005	16.9	0.1	2.9	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Semialdhyde_dh	PF01118.19	gi|257051968|ref|YP_003129801.1|	-	0.002	18.4	0.4	0.9	9.8	0.0	3.6	3	1	1	4	4	4	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
GIDA	PF01134.17	gi|257051968|ref|YP_003129801.1|	-	0.0099	14.7	0.0	0.51	9.1	0.0	2.3	2	1	0	2	2	2	1	Glucose	inhibited	division	protein	A
DUF3751	PF12571.3	gi|257051968|ref|YP_003129801.1|	-	0.12	12.2	0.1	15	5.3	0.0	2.2	2	0	0	2	2	2	0	Phage	tail-collar	fibre	protein
NAD_binding_9	PF13454.1	gi|257051968|ref|YP_003129801.1|	-	0.14	11.9	3.1	2.1	8.0	0.9	3.0	2	1	0	2	2	2	0	FAD-NAD(P)-binding
PAPS_reduct	PF01507.14	gi|257051970|ref|YP_003129803.1|	-	3.2e-19	69.4	0.0	3.3e-15	56.3	0.0	3.1	2	1	0	2	2	2	2	Phosphoadenosine	phosphosulfate	reductase	family
ATP_bind_4	PF01902.12	gi|257051970|ref|YP_003129803.1|	-	0.00065	19.1	0.0	0.0024	17.2	0.0	1.8	2	0	0	2	2	2	1	ATP-binding	region
PAS_4	PF08448.5	gi|257051971|ref|YP_003129804.1|	-	3.2e-43	146.2	7.4	2.5e-17	62.8	0.1	3.7	3	0	0	3	3	3	3	PAS	fold
PAS_9	PF13426.1	gi|257051971|ref|YP_003129804.1|	-	4.4e-40	136.2	0.5	1.8e-14	53.9	0.0	4.2	4	0	0	4	4	4	3	PAS	domain
PAS	PF00989.19	gi|257051971|ref|YP_003129804.1|	-	3.2e-24	84.8	0.1	1e-06	28.5	0.0	3.9	3	0	0	3	3	3	3	PAS	fold
Response_reg	PF00072.19	gi|257051971|ref|YP_003129804.1|	-	1.7e-21	76.3	0.0	7.4e-21	74.2	0.0	2.1	2	0	0	2	2	2	1	Response	regulator	receiver	domain
HATPase_c	PF02518.21	gi|257051971|ref|YP_003129804.1|	-	2.5e-20	72.2	0.0	6.6e-20	70.8	0.0	1.8	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
GAF_2	PF13185.1	gi|257051971|ref|YP_003129804.1|	-	1.4e-16	61.2	1.1	2.9e-10	40.8	0.1	4.0	3	0	0	3	3	3	2	GAF	domain
GAF_3	PF13492.1	gi|257051971|ref|YP_003129804.1|	-	6.9e-16	58.5	1.0	4.3e-06	26.8	0.0	4.5	5	0	0	5	5	5	2	GAF	domain
PAS_8	PF13188.1	gi|257051971|ref|YP_003129804.1|	-	1.7e-13	49.8	0.1	7.6e-06	25.5	0.0	4.6	4	0	0	4	4	4	3	PAS	domain
HisKA	PF00512.20	gi|257051971|ref|YP_003129804.1|	-	4.8e-11	42.4	1.4	4.8e-11	42.4	1.0	3.6	3	1	0	3	3	2	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_3	PF08447.6	gi|257051971|ref|YP_003129804.1|	-	7.6e-09	35.5	0.1	4.7e-06	26.6	0.0	3.3	3	0	0	3	3	2	1	PAS	fold
HATPase_c_3	PF13589.1	gi|257051971|ref|YP_003129804.1|	-	0.0019	17.8	0.0	0.0086	15.7	0.0	2.1	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_7	PF12860.2	gi|257051971|ref|YP_003129804.1|	-	0.026	14.5	0.8	20	5.2	0.0	4.5	4	1	0	4	4	4	0	PAS	fold
HTH_34	PF13601.1	gi|257051972|ref|YP_003129805.1|	-	1.4e-24	85.9	0.0	1.5e-24	85.7	0.0	1.0	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_20	PF12840.2	gi|257051972|ref|YP_003129805.1|	-	3.8e-12	45.8	0.0	5.8e-12	45.2	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|257051972|ref|YP_003129805.1|	-	1.4e-07	31.0	0.0	2.2e-07	30.4	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
PadR	PF03551.9	gi|257051972|ref|YP_003129805.1|	-	7.1e-06	25.7	0.0	9.7e-06	25.2	0.0	1.2	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_24	PF13412.1	gi|257051972|ref|YP_003129805.1|	-	1.1e-05	24.7	0.0	1.8e-05	24.0	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.2	gi|257051972|ref|YP_003129805.1|	-	8.5e-05	22.1	0.0	0.0001	21.8	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HxlR	PF01638.12	gi|257051972|ref|YP_003129805.1|	-	0.00082	18.9	0.0	0.00095	18.7	0.0	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
TrmB	PF01978.14	gi|257051972|ref|YP_003129805.1|	-	0.0024	17.5	0.0	0.0033	17.1	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.17	gi|257051972|ref|YP_003129805.1|	-	0.0039	16.8	0.0	0.0056	16.3	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_45	PF14947.1	gi|257051972|ref|YP_003129805.1|	-	0.012	15.3	0.0	0.019	14.7	0.0	1.3	1	1	0	1	1	1	0	Winged	helix-turn-helix
DSHCT	PF08148.7	gi|257051972|ref|YP_003129805.1|	-	0.013	14.7	0.0	0.034	13.3	0.0	1.5	1	1	1	2	2	2	0	DSHCT	(NUC185)	domain
Mga	PF05043.8	gi|257051972|ref|YP_003129805.1|	-	0.075	13.3	0.0	0.13	12.5	0.0	1.4	1	0	0	1	1	1	0	Mga	helix-turn-helix	domain
HTH_27	PF13463.1	gi|257051972|ref|YP_003129805.1|	-	0.12	12.6	0.0	0.17	12.2	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
FeoC	PF09012.5	gi|257051972|ref|YP_003129805.1|	-	0.14	11.9	0.1	0.33	10.6	0.0	1.6	2	0	0	2	2	2	0	FeoC	like	transcriptional	regulator
DUF4191	PF13829.1	gi|257051973|ref|YP_003129806.1|	-	0.0091	15.1	0.4	0.0091	15.1	0.3	2.1	2	1	1	3	3	3	1	Domain	of	unknown	function	(DUF4191)
MFS_1	PF07690.11	gi|257051973|ref|YP_003129806.1|	-	0.13	10.9	23.1	0.041	12.6	4.1	2.1	2	0	0	2	2	2	0	Major	Facilitator	Superfamily
DUF2207	PF09972.4	gi|257051973|ref|YP_003129806.1|	-	0.15	10.6	0.0	0.15	10.6	0.0	2.3	2	1	0	2	2	2	0	Predicted	membrane	protein	(DUF2207)
DUF998	PF06197.8	gi|257051973|ref|YP_003129806.1|	-	1.1	8.4	37.8	4.1	6.6	11.2	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF998)
DUF3329	PF11808.3	gi|257051973|ref|YP_003129806.1|	-	4.7	7.3	9.8	0.69	10.0	0.7	2.7	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF3329)
ABC2_membrane_2	PF12679.2	gi|257051974|ref|YP_003129807.1|	-	1.3e-33	116.0	16.8	2.8e-33	114.9	11.7	1.5	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.2	gi|257051974|ref|YP_003129807.1|	-	3e-17	62.5	14.6	4.1e-17	62.1	10.1	1.2	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.2	gi|257051974|ref|YP_003129807.1|	-	2.9e-06	26.5	22.4	3.6e-06	26.2	15.6	1.1	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_5	PF13346.1	gi|257051974|ref|YP_003129807.1|	-	2.3e-05	23.7	11.9	2.3e-05	23.7	8.2	1.7	1	1	1	2	2	2	1	ABC-2	family	transporter	protein
ABC_tran	PF00005.22	gi|257051975|ref|YP_003129808.1|	-	8.5e-30	103.8	0.0	1.3e-29	103.2	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|257051975|ref|YP_003129808.1|	-	9.6e-14	52.0	0.1	1.6e-08	34.8	0.0	2.1	1	1	1	2	2	2	2	AAA	domain
AAA_29	PF13555.1	gi|257051975|ref|YP_003129808.1|	-	0.012	15.0	0.2	0.023	14.2	0.2	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_10	PF12846.2	gi|257051975|ref|YP_003129808.1|	-	0.049	13.0	0.0	0.45	9.9	0.0	2.0	2	0	0	2	2	2	0	AAA-like	domain
DUF258	PF03193.11	gi|257051975|ref|YP_003129808.1|	-	0.057	12.6	0.0	0.1	11.8	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
MobB	PF03205.9	gi|257051975|ref|YP_003129808.1|	-	0.11	12.1	0.1	4.9	6.8	0.0	2.3	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_23	PF13476.1	gi|257051975|ref|YP_003129808.1|	-	0.12	12.7	0.2	0.18	12.1	0.1	1.2	1	0	0	1	1	1	0	AAA	domain
MMR_HSR1	PF01926.18	gi|257051975|ref|YP_003129808.1|	-	0.14	12.0	0.1	0.31	10.9	0.0	1.8	2	1	0	2	2	2	0	50S	ribosome-binding	GTPase
Spt5-NGN	PF03439.8	gi|257051976|ref|YP_003129809.1|	-	3.8e-25	87.4	0.1	6.1e-25	86.7	0.1	1.3	1	0	0	1	1	1	1	Early	transcription	elongation	factor	of	RNA	pol	II,	NGN	section
KOW	PF00467.24	gi|257051976|ref|YP_003129809.1|	-	1.6e-07	30.7	0.6	4.6e-07	29.3	0.1	2.0	2	0	0	2	2	2	1	KOW	motif
NusG	PF02357.14	gi|257051976|ref|YP_003129809.1|	-	0.0083	16.3	0.0	0.11	12.7	0.0	2.3	1	1	0	1	1	1	1	Transcription	termination	factor	nusG
SecE	PF00584.15	gi|257051977|ref|YP_003129810.1|	-	0.018	14.5	0.4	0.019	14.4	0.2	1.1	1	0	0	1	1	1	0	SecE/Sec61-gamma	subunits	of	protein	translocation	complex
Tubulin	PF00091.20	gi|257051978|ref|YP_003129811.1|	-	5.5e-35	121.1	0.5	1.3e-34	119.8	0.3	1.6	1	1	0	1	1	1	1	Tubulin/FtsZ	family,	GTPase	domain
FtsZ_C	PF12327.3	gi|257051978|ref|YP_003129811.1|	-	9.7e-34	115.3	1.5	4.3e-33	113.2	0.2	2.5	2	0	0	2	2	2	1	FtsZ	family,	C-terminal	domain
PRK	PF00485.13	gi|257051978|ref|YP_003129811.1|	-	0.081	12.4	0.2	0.14	11.7	0.1	1.3	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
Cpn10	PF00166.16	gi|257051978|ref|YP_003129811.1|	-	0.088	12.7	2.5	4.8	7.1	0.5	2.7	2	0	0	2	2	2	0	Chaperonin	10	Kd	subunit
Eno-Rase_NADH_b	PF12242.3	gi|257051978|ref|YP_003129811.1|	-	0.089	12.5	1.3	0.29	10.9	0.9	1.8	1	0	0	1	1	1	0	NAD(P)H	binding	domain	of	trans-2-enoyl-CoA	reductase
CD99L2	PF12301.3	gi|257051978|ref|YP_003129811.1|	-	0.15	11.6	2.1	0.28	10.8	1.5	1.5	1	0	0	1	1	1	0	CD99	antigen	like	protein	2
NmrA	PF05368.8	gi|257051978|ref|YP_003129811.1|	-	0.28	10.3	2.3	0.51	9.5	1.5	1.4	1	1	0	1	1	1	0	NmrA-like	family
ThiF	PF00899.16	gi|257051978|ref|YP_003129811.1|	-	0.37	10.6	2.7	0.59	9.9	1.3	1.8	1	1	0	1	1	1	0	ThiF	family
Tubulin_2	PF13809.1	gi|257051978|ref|YP_003129811.1|	-	1.5	7.6	4.6	5.6	5.7	3.2	1.9	1	1	0	1	1	1	0	Tubulin	like
FAD_binding_6	PF00970.19	gi|257051979|ref|YP_003129812.1|	-	1.4e-10	41.1	0.0	2e-10	40.6	0.0	1.2	1	0	0	1	1	1	1	Oxidoreductase	FAD-binding	domain
DUF3465	PF11948.3	gi|257051979|ref|YP_003129812.1|	-	0.1	12.4	0.0	0.15	11.9	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3465)
POR_N	PF01855.14	gi|257051980|ref|YP_003129813.1|	-	1.8e-59	201.0	0.8	3.1e-59	200.2	0.6	1.3	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
POR	PF01558.13	gi|257051980|ref|YP_003129813.1|	-	3.2e-40	137.8	0.6	7.9e-40	136.5	0.4	1.7	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
TPP_enzyme_N	PF02776.13	gi|257051980|ref|YP_003129813.1|	-	1.9e-06	27.4	1.3	3.8e-06	26.4	0.6	1.7	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_C	PF02775.16	gi|257051981|ref|YP_003129814.1|	-	2.1e-33	115.0	0.4	3.2e-33	114.4	0.2	1.3	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
PFO_beta_C	PF12367.3	gi|257051981|ref|YP_003129814.1|	-	2.1e-15	56.3	0.1	4.5e-15	55.3	0.1	1.5	1	0	0	1	1	1	1	Pyruvate	ferredoxin	oxidoreductase	beta	subunit	C	terminal
DUF1469	PF07332.6	gi|257051982|ref|YP_003129815.1|	-	0.13	12.0	7.0	0.15	11.7	4.8	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1469)
NifU	PF01106.12	gi|257051984|ref|YP_003129817.1|	-	4.8e-11	42.2	0.0	6e-11	41.9	0.0	1.2	1	0	0	1	1	1	1	NifU-like	domain
FIST	PF08495.5	gi|257051984|ref|YP_003129817.1|	-	0.041	13.0	0.0	0.056	12.5	0.0	1.2	1	1	0	1	1	1	0	FIST	N	domain
ApbA	PF02558.11	gi|257051985|ref|YP_003129818.1|	-	3.2e-31	107.8	0.2	4.5e-31	107.3	0.1	1.2	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
ApbA_C	PF08546.6	gi|257051985|ref|YP_003129818.1|	-	5.6e-31	107.1	0.1	1.4e-30	105.8	0.0	1.7	2	0	0	2	2	2	1	Ketopantoate	reductase	PanE/ApbA	C	terminal
NAD_Gly3P_dh_N	PF01210.18	gi|257051985|ref|YP_003129818.1|	-	0.05	13.3	0.2	0.094	12.4	0.1	1.5	1	1	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
DUF111	PF01969.12	gi|257051986|ref|YP_003129819.1|	-	1.4e-133	445.4	3.8	1.6e-133	445.2	2.6	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF111
Transcrip_reg	PF01709.15	gi|257051986|ref|YP_003129819.1|	-	0.14	11.2	0.0	0.24	10.4	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
TRP	PF06011.7	gi|257051987|ref|YP_003129820.1|	-	0.00069	18.3	0.2	0.013	14.1	0.5	2.2	2	1	0	2	2	2	1	Transient	receptor	potential	(TRP)	ion	channel
PsaM	PF07465.8	gi|257051987|ref|YP_003129820.1|	-	0.34	10.5	3.6	2.1	7.9	1.5	3.0	2	0	0	2	2	2	0	Photosystem	I	protein	M	(PsaM)
ABC_tran	PF00005.22	gi|257051988|ref|YP_003129821.1|	-	2e-31	109.0	0.0	2.7e-31	108.6	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|257051988|ref|YP_003129821.1|	-	2.1e-13	50.8	0.0	1e-08	35.4	0.0	2.1	1	1	1	2	2	2	2	AAA	domain
AAA_23	PF13476.1	gi|257051988|ref|YP_003129821.1|	-	0.014	15.7	0.0	0.021	15.1	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_16	PF13191.1	gi|257051988|ref|YP_003129821.1|	-	0.04	13.9	0.1	0.15	12.0	0.0	1.9	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_15	PF13175.1	gi|257051988|ref|YP_003129821.1|	-	0.065	12.2	0.0	0.27	10.2	0.0	1.7	2	0	0	2	2	2	0	AAA	ATPase	domain
SbcCD_C	PF13558.1	gi|257051988|ref|YP_003129821.1|	-	0.095	12.6	0.0	0.16	11.9	0.0	1.4	1	0	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA	PF00004.24	gi|257051988|ref|YP_003129821.1|	-	0.13	12.4	0.1	0.57	10.3	0.1	1.9	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF460	PF04312.8	gi|257051989|ref|YP_003129822.1|	-	0.018	14.5	0.8	0.043	13.3	0.5	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF460)
Rad51	PF08423.6	gi|257051990|ref|YP_003129823.1|	-	2.3e-29	102.0	0.1	2.9e-29	101.7	0.0	1.0	1	0	0	1	1	1	1	Rad51
AAA_25	PF13481.1	gi|257051990|ref|YP_003129823.1|	-	1.6e-15	56.9	0.6	2.3e-15	56.5	0.4	1.2	1	0	0	1	1	1	1	AAA	domain
RecA	PF00154.16	gi|257051990|ref|YP_003129823.1|	-	1.2e-10	40.9	0.1	1.5e-10	40.6	0.0	1.2	1	0	0	1	1	1	1	recA	bacterial	DNA	recombination	protein
KaiC	PF06745.8	gi|257051990|ref|YP_003129823.1|	-	1.1e-09	37.7	0.0	1.6e-09	37.2	0.0	1.4	1	1	0	1	1	1	1	KaiC
Zot	PF05707.7	gi|257051990|ref|YP_003129823.1|	-	1.3e-06	28.0	0.0	1.4e-06	27.9	0.0	1.2	1	0	0	1	1	1	1	Zonular	occludens	toxin	(Zot)
AAA_24	PF13479.1	gi|257051990|ref|YP_003129823.1|	-	0.00021	20.9	0.0	0.00031	20.3	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
DnaB_C	PF03796.10	gi|257051990|ref|YP_003129823.1|	-	0.00095	18.1	0.8	0.057	12.2	0.0	2.1	1	1	1	2	2	2	1	DnaB-like	helicase	C	terminal	domain
IstB_IS21	PF01695.12	gi|257051990|ref|YP_003129823.1|	-	0.0034	16.8	0.5	0.027	13.9	0.1	2.1	1	1	1	2	2	2	1	IstB-like	ATP	binding	protein
AAA_19	PF13245.1	gi|257051990|ref|YP_003129823.1|	-	0.0053	16.4	0.2	0.0053	16.4	0.1	1.9	2	0	0	2	2	2	1	Part	of	AAA	domain
AAA_14	PF13173.1	gi|257051990|ref|YP_003129823.1|	-	0.037	13.9	0.0	0.052	13.4	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
Arch_ATPase	PF01637.13	gi|257051990|ref|YP_003129823.1|	-	0.061	13.0	0.0	0.079	12.6	0.0	1.2	1	0	0	1	1	1	0	Archaeal	ATPase
Isochorismatase	PF00857.15	gi|257051990|ref|YP_003129823.1|	-	0.074	12.9	0.0	0.12	12.3	0.0	1.3	1	0	0	1	1	1	0	Isochorismatase	family
Zeta_toxin	PF06414.7	gi|257051990|ref|YP_003129823.1|	-	0.13	11.2	0.6	0.24	10.4	0.2	1.7	1	1	0	1	1	1	0	Zeta	toxin
PhoU	PF01895.14	gi|257051992|ref|YP_003129825.1|	-	1.8e-35	121.2	14.0	9.5e-20	70.8	0.7	2.2	2	0	0	2	2	2	2	PhoU	domain
ABC_tran	PF00005.22	gi|257051993|ref|YP_003129826.1|	-	1.5e-33	116.0	0.0	3.3e-33	114.8	0.0	1.6	2	0	0	2	2	1	1	ABC	transporter
AAA_21	PF13304.1	gi|257051993|ref|YP_003129826.1|	-	4.7e-15	56.3	0.0	3.6e-08	33.7	0.0	2.1	1	1	1	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|257051993|ref|YP_003129826.1|	-	1e-08	34.6	0.2	6.3e-07	28.8	0.1	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.1	gi|257051993|ref|YP_003129826.1|	-	1.1e-05	25.5	0.0	0.00013	22.1	0.0	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_15	PF13175.1	gi|257051993|ref|YP_003129826.1|	-	3.2e-05	23.1	0.0	0.062	12.3	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_16	PF13191.1	gi|257051993|ref|YP_003129826.1|	-	0.00023	21.1	0.1	0.005	16.8	0.0	2.1	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_29	PF13555.1	gi|257051993|ref|YP_003129826.1|	-	0.00026	20.4	0.0	0.00071	19.0	0.0	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
DUF258	PF03193.11	gi|257051993|ref|YP_003129826.1|	-	0.00049	19.3	0.0	0.00099	18.3	0.0	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_23	PF13476.1	gi|257051993|ref|YP_003129826.1|	-	0.0012	19.2	0.0	0.0036	17.6	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
AAA_25	PF13481.1	gi|257051993|ref|YP_003129826.1|	-	0.0027	17.1	0.0	0.024	14.0	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
DeoRC	PF00455.17	gi|257051993|ref|YP_003129826.1|	-	0.0027	17.3	0.0	0.0046	16.6	0.0	1.3	1	0	0	1	1	1	1	DeoR	C	terminal	sensor	domain
AAA_33	PF13671.1	gi|257051993|ref|YP_003129826.1|	-	0.014	15.2	0.0	0.036	13.9	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
AAA_19	PF13245.1	gi|257051993|ref|YP_003129826.1|	-	0.017	14.8	0.0	4.2	7.1	0.0	2.7	2	0	0	2	2	2	0	Part	of	AAA	domain
Adeno_IVa2	PF02456.10	gi|257051993|ref|YP_003129826.1|	-	0.022	13.4	0.0	0.48	9.0	0.0	2.0	2	0	0	2	2	2	0	Adenovirus	IVa2	protein
AAA_17	PF13207.1	gi|257051993|ref|YP_003129826.1|	-	0.026	15.3	0.5	0.13	13.1	0.3	2.4	1	1	1	2	2	2	0	AAA	domain
Rad17	PF03215.10	gi|257051993|ref|YP_003129826.1|	-	0.03	13.0	0.0	0.042	12.5	0.0	1.1	1	0	0	1	1	1	0	Rad17	cell	cycle	checkpoint	protein
AAA_10	PF12846.2	gi|257051993|ref|YP_003129826.1|	-	0.031	13.7	0.2	0.097	12.0	0.1	1.9	1	1	1	2	2	2	0	AAA-like	domain
NYN_YacP	PF05991.6	gi|257051993|ref|YP_003129826.1|	-	0.057	13.1	0.1	0.14	11.9	0.1	1.6	1	0	0	1	1	1	0	YacP-like	NYN	domain
ABC_ATPase	PF09818.4	gi|257051993|ref|YP_003129826.1|	-	0.068	11.7	0.0	3.7	6.0	0.0	2.1	2	0	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
AAA_18	PF13238.1	gi|257051993|ref|YP_003129826.1|	-	0.072	13.3	0.0	0.18	12.1	0.0	1.8	2	1	0	2	2	1	0	AAA	domain
AAA_30	PF13604.1	gi|257051993|ref|YP_003129826.1|	-	0.088	12.3	0.0	2.3	7.7	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
MMR_HSR1	PF01926.18	gi|257051993|ref|YP_003129826.1|	-	0.12	12.3	0.0	0.53	10.2	0.0	2.0	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
BPD_transp_1	PF00528.17	gi|257051994|ref|YP_003129827.1|	-	5.8e-22	78.0	10.3	5.8e-22	78.0	7.1	5.9	2	2	3	5	5	5	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.17	gi|257051995|ref|YP_003129828.1|	-	8.3e-19	67.8	8.8	8.3e-19	67.8	6.1	3.0	1	1	2	3	3	3	1	Binding-protein-dependent	transport	system	inner	membrane	component
PBP_like_2	PF12849.2	gi|257051996|ref|YP_003129829.1|	-	8.8e-42	143.4	1.9	1.5e-41	142.7	1.3	1.3	1	0	0	1	1	1	1	PBP	superfamily	domain
PBP_like	PF12727.2	gi|257051996|ref|YP_003129829.1|	-	1.2e-11	43.9	0.0	1.9e-11	43.3	0.0	1.3	1	0	0	1	1	1	1	PBP	superfamily	domain
TAT_signal	PF10518.4	gi|257051996|ref|YP_003129829.1|	-	0.0016	18.2	0.3	0.0044	16.9	0.2	1.7	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
UCR_Fe-S_N	PF10399.4	gi|257051996|ref|YP_003129829.1|	-	0.071	12.2	0.9	0.13	11.4	0.7	1.4	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
PhoU	PF01895.14	gi|257051997|ref|YP_003129830.1|	-	1.6e-22	79.7	4.2	2.9e-15	56.4	0.5	2.3	2	0	0	2	2	2	2	PhoU	domain
Antitoxin-MazE	PF04014.13	gi|257051997|ref|YP_003129830.1|	-	1.8e-09	37.1	0.0	6.8e-09	35.2	0.0	2.0	2	0	0	2	2	2	1	Antidote-toxin	recognition	MazE
MCPsignal	PF00015.16	gi|257051997|ref|YP_003129830.1|	-	0.0013	18.3	0.3	0.0027	17.2	0.1	1.7	1	1	0	1	1	1	1	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
TGFb_propeptide	PF00688.13	gi|257051997|ref|YP_003129830.1|	-	0.055	12.7	0.0	0.087	12.0	0.0	1.2	1	0	0	1	1	1	0	TGF-beta	propeptide
RNA_bind_2	PF10133.4	gi|257051997|ref|YP_003129830.1|	-	0.074	13.0	0.1	0.24	11.4	0.0	1.9	1	1	0	1	1	1	0	Predicted	RNA-binding	protein
HAMP	PF00672.20	gi|257051997|ref|YP_003129830.1|	-	0.22	11.7	3.4	0.67	10.1	0.5	2.7	1	1	1	2	2	2	0	HAMP	domain
HisKA_3	PF07730.8	gi|257051997|ref|YP_003129830.1|	-	5	7.5	8.0	24	5.3	0.1	3.5	2	2	1	3	3	3	0	Histidine	kinase
HTH_10	PF04967.7	gi|257051998|ref|YP_003129831.1|	-	4.1e-18	64.6	0.1	8.5e-18	63.6	0.0	1.6	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Sigma70_r4	PF04545.11	gi|257051998|ref|YP_003129831.1|	-	0.07	12.4	0.0	0.16	11.3	0.0	1.6	1	0	0	1	1	1	0	Sigma-70,	region	4
Abhydrolase_6	PF12697.2	gi|257051999|ref|YP_003129832.1|	-	3.1e-31	109.0	6.3	3.6e-31	108.7	4.4	1.0	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_5	PF12695.2	gi|257051999|ref|YP_003129832.1|	-	2e-13	50.3	0.0	2.8e-13	49.8	0.0	1.2	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_8	PF06259.7	gi|257051999|ref|YP_003129832.1|	-	0.00014	21.3	0.1	0.00034	20.1	0.0	1.5	1	1	1	2	2	2	1	Alpha/beta	hydrolase
Abhydrolase_1	PF00561.15	gi|257051999|ref|YP_003129832.1|	-	0.00029	20.4	0.0	0.027	14.0	0.1	2.1	1	1	1	2	2	2	2	alpha/beta	hydrolase	fold
Thioesterase	PF00975.15	gi|257051999|ref|YP_003129832.1|	-	0.0088	16.2	0.0	0.013	15.6	0.0	1.4	1	1	0	1	1	1	1	Thioesterase	domain
Ribosomal_S8e	PF01201.17	gi|257052000|ref|YP_003129833.1|	-	3.8e-34	117.6	2.9	4.1e-34	117.5	2.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S8e
Fer4_15	PF13459.1	gi|257052001|ref|YP_003129834.1|	-	3.5e-18	65.9	6.1	3.9e-18	65.7	4.2	1.0	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.1	gi|257052001|ref|YP_003129834.1|	-	5.2e-15	55.5	2.7	5.9e-15	55.3	1.9	1.0	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_19	PF06902.6	gi|257052001|ref|YP_003129834.1|	-	4e-08	32.9	0.1	4.3e-08	32.8	0.0	1.1	1	0	0	1	1	1	1	Divergent	4Fe-4S	mono-cluster
Fer4	PF00037.22	gi|257052001|ref|YP_003129834.1|	-	0.00036	20.0	5.5	0.083	12.5	0.3	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_6	PF12837.2	gi|257052001|ref|YP_003129834.1|	-	0.013	15.2	2.9	0.34	10.8	0.2	2.2	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|257052001|ref|YP_003129834.1|	-	0.085	12.7	0.1	2.4	8.0	0.0	2.1	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
DUF2240	PF09999.4	gi|257052002|ref|YP_003129835.1|	-	5e-49	165.4	0.0	5.6e-49	165.2	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2240)
DUF21	PF01595.15	gi|257052004|ref|YP_003129837.1|	-	1.5e-48	164.5	4.9	2e-48	164.0	3.4	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF21
CorC_HlyC	PF03471.12	gi|257052004|ref|YP_003129837.1|	-	2.7e-21	75.1	1.1	1e-20	73.2	0.2	2.5	2	0	0	2	2	2	1	Transporter	associated	domain
CBS	PF00571.23	gi|257052004|ref|YP_003129837.1|	-	2.6e-13	49.5	2.5	1.2e-05	24.9	0.5	2.6	2	0	0	2	2	2	2	CBS	domain
HAD_2	PF13419.1	gi|257052005|ref|YP_003129838.1|	-	5.1e-27	95.2	0.1	6.3e-27	94.9	0.0	1.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|257052005|ref|YP_003129838.1|	-	6.1e-10	38.6	0.1	1.6e-09	37.3	0.1	1.8	1	0	0	1	1	1	1	HAD-hyrolase-like
Hydrolase	PF00702.21	gi|257052005|ref|YP_003129838.1|	-	1.2e-09	38.9	3.6	3.9e-09	37.2	2.5	1.7	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.2	gi|257052005|ref|YP_003129838.1|	-	0.00029	21.0	0.1	0.00037	20.7	0.1	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
OMPdecase	PF00215.19	gi|257052006|ref|YP_003129839.1|	-	1.1e-32	113.2	0.0	1.4e-32	112.9	0.0	1.1	1	0	0	1	1	1	1	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
DUF3697	PF12478.3	gi|257052006|ref|YP_003129839.1|	-	0.52	9.9	0.1	0.52	9.9	0.1	2.1	3	0	0	3	3	3	0	Ubiquitin-associated	protein	2
Sensor	PF13796.1	gi|257052007|ref|YP_003129840.1|	-	9.1e-26	90.5	28.4	1.3e-25	90.0	18.8	1.8	1	1	0	1	1	1	1	Putative	sensor
zf-HIT	PF04438.11	gi|257052008|ref|YP_003129841.1|	-	8.7e-06	25.2	3.4	8.7e-06	25.2	2.4	2.0	2	0	0	2	2	2	1	HIT	zinc	finger
zf-B_box	PF00643.19	gi|257052008|ref|YP_003129841.1|	-	0.0021	17.9	3.1	0.01	15.7	0.1	2.1	1	1	1	2	2	2	2	B-box	zinc	finger
zf-AN1	PF01428.11	gi|257052008|ref|YP_003129841.1|	-	0.037	13.9	2.5	0.037	13.9	1.7	1.7	1	1	0	1	1	1	0	AN1-like	Zinc	finger
DUF2054	PF10218.4	gi|257052008|ref|YP_003129841.1|	-	0.071	12.9	4.9	0.081	12.7	3.4	1.1	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2054)
zf-C3HC4_2	PF13923.1	gi|257052008|ref|YP_003129841.1|	-	0.3	11.1	4.8	0.35	10.9	0.3	2.0	1	1	1	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
DZR	PF12773.2	gi|257052008|ref|YP_003129841.1|	-	0.47	10.3	7.4	3.4	7.5	0.1	2.3	1	1	1	2	2	2	0	Double	zinc	ribbon
C1_1	PF00130.17	gi|257052008|ref|YP_003129841.1|	-	0.67	9.7	4.7	7.7	6.3	1.0	2.2	1	1	1	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
C1_2	PF03107.11	gi|257052008|ref|YP_003129841.1|	-	0.91	9.6	11.1	4.7	7.4	7.7	2.4	1	1	0	1	1	1	0	C1	domain
zf-C2H2_6	PF13912.1	gi|257052008|ref|YP_003129841.1|	-	1.2	9.1	5.1	5.6	7.0	0.3	2.4	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zf-C2HC5	PF06221.8	gi|257052008|ref|YP_003129841.1|	-	1.3	8.7	7.9	0.11	12.2	1.4	1.9	1	1	1	2	2	2	0	Putative	zinc	finger	motif,	C2HC5-type
C1_3	PF07649.7	gi|257052008|ref|YP_003129841.1|	-	2.2	8.4	9.5	0.21	11.6	1.9	2.2	1	1	1	2	2	2	0	C1-like	domain
Laminin_EGF	PF00053.19	gi|257052008|ref|YP_003129841.1|	-	2.4	8.1	10.6	27	4.7	7.3	2.1	1	1	1	2	2	2	0	Laminin	EGF-like	(Domains	III	and	V)
zf-C3HC4_3	PF13920.1	gi|257052008|ref|YP_003129841.1|	-	3.7	7.2	6.4	24	4.6	4.4	1.9	1	1	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
DUF46	PF01864.12	gi|257052009|ref|YP_003129842.1|	-	3.6e-47	160.4	1.0	4.2e-47	160.2	0.7	1.0	1	0	0	1	1	1	1	Putative	integral	membrane	protein	DUF46
CTP_transf_1	PF01148.15	gi|257052009|ref|YP_003129842.1|	-	7.9e-05	22.4	0.1	7.9e-05	22.4	0.0	2.2	3	0	0	3	3	3	1	Cytidylyltransferase	family
Pribosyltran	PF00156.22	gi|257052009|ref|YP_003129842.1|	-	0.13	12.0	0.3	0.2	11.3	0.2	1.3	1	0	0	1	1	1	0	Phosphoribosyl	transferase	domain
CcmD	PF04995.9	gi|257052009|ref|YP_003129842.1|	-	0.23	11.2	0.1	0.23	11.2	0.0	3.0	4	0	0	4	4	4	0	Heme	exporter	protein	D	(CcmD)
Gly-zipper_OmpA	PF13436.1	gi|257052009|ref|YP_003129842.1|	-	0.42	10.2	11.3	2.8	7.6	7.8	2.0	1	1	0	1	1	1	0	Glycine-zipper	containing	OmpA-like	membrane	domain
BPD_transp_1	PF00528.17	gi|257052009|ref|YP_003129842.1|	-	7.6	5.9	12.0	1.5	8.3	2.0	2.7	2	1	1	3	3	3	0	Binding-protein-dependent	transport	system	inner	membrane	component
TM_helix	PF05552.7	gi|257052009|ref|YP_003129842.1|	-	9.6	5.9	9.5	0.6	9.8	0.2	2.6	3	0	0	3	3	3	0	Conserved	TM	helix
Porphobil_deam	PF01379.15	gi|257052010|ref|YP_003129843.1|	-	2.5e-59	199.7	0.2	1.8e-48	164.2	0.0	2.2	2	0	0	2	2	2	2	Porphobilinogen	deaminase,	dipyromethane	cofactor	binding	domain
Porphobil_deamC	PF03900.10	gi|257052010|ref|YP_003129843.1|	-	6.9e-11	42.0	0.2	2.5e-10	40.2	0.1	2.0	1	0	0	1	1	1	1	Porphobilinogen	deaminase,	C-terminal	domain
HEM4	PF02602.10	gi|257052011|ref|YP_003129844.1|	-	4.8e-41	140.4	4.2	5.7e-41	140.2	2.9	1.0	1	0	0	1	1	1	1	Uroporphyrinogen-III	synthase	HemD
DUF1442	PF07279.6	gi|257052011|ref|YP_003129844.1|	-	0.065	12.3	0.0	0.11	11.5	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1442)
Unstab_antitox	PF09720.5	gi|257052011|ref|YP_003129844.1|	-	0.096	12.3	0.1	0.21	11.3	0.1	1.6	1	0	0	1	1	1	0	Putative	addiction	module	component
HATPase_c	PF02518.21	gi|257052012|ref|YP_003129845.1|	-	6.3e-08	32.3	0.1	1.6e-07	31.0	0.1	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.1	gi|257052012|ref|YP_003129845.1|	-	0.00047	19.9	0.1	0.00081	19.1	0.1	1.4	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
DUF1440	PF07274.7	gi|257052012|ref|YP_003129845.1|	-	0.0013	18.6	2.2	0.0024	17.8	1.1	1.6	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1440)
HisKA	PF00512.20	gi|257052012|ref|YP_003129845.1|	-	0.017	15.1	0.2	0.017	15.1	0.1	2.3	2	1	0	2	2	2	0	His	Kinase	A	(phospho-acceptor)	domain
Cellulase	PF00150.13	gi|257052013|ref|YP_003129846.1|	-	0.0052	16.0	0.0	0.0071	15.5	0.0	1.2	1	0	0	1	1	1	1	Cellulase	(glycosyl	hydrolase	family	5)
DUF4434	PF14488.1	gi|257052013|ref|YP_003129846.1|	-	0.015	14.9	0.0	0.025	14.3	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4434)
DHH	PF01368.15	gi|257052014|ref|YP_003129847.1|	-	2.8e-14	52.9	0.0	4.5e-14	52.3	0.0	1.2	1	0	0	1	1	1	1	DHH	family
DHHA1	PF02272.14	gi|257052014|ref|YP_003129847.1|	-	5.1e-14	51.7	0.7	1.1e-13	50.6	0.5	1.6	1	0	0	1	1	1	1	DHHA1	domain
PALP	PF00291.20	gi|257052015|ref|YP_003129848.1|	-	8.3e-60	202.5	0.6	9.3e-60	202.4	0.4	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Cys_Met_Meta_PP	PF01053.15	gi|257052016|ref|YP_003129849.1|	-	4.5e-154	512.4	0.0	5.1e-154	512.2	0.0	1.0	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
DegT_DnrJ_EryC1	PF01041.12	gi|257052016|ref|YP_003129849.1|	-	2.3e-06	26.8	0.1	4.6e-06	25.9	0.1	1.5	1	1	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Aminotran_5	PF00266.14	gi|257052016|ref|YP_003129849.1|	-	0.00011	21.0	0.0	0.00017	20.4	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class-V
Met_gamma_lyase	PF06838.6	gi|257052016|ref|YP_003129849.1|	-	0.015	13.5	0.0	0.021	13.1	0.0	1.2	1	0	0	1	1	1	0	Methionine	gamma-lyase
SQS_PSY	PF00494.14	gi|257052017|ref|YP_003129850.1|	-	7.8e-42	143.3	4.4	9.3e-42	143.1	3.1	1.1	1	0	0	1	1	1	1	Squalene/phytoene	synthase
CheC	PF04509.7	gi|257052018|ref|YP_003129851.1|	-	8e-11	41.4	0.1	2.6e-10	39.8	0.0	1.9	1	0	0	1	1	1	1	CheC-like	family
CheX	PF13690.1	gi|257052018|ref|YP_003129851.1|	-	2.5e-07	30.4	0.0	4.8e-07	29.5	0.0	1.4	1	0	0	1	1	1	1	Chemotaxis	phosphatase	CheX
CopD	PF05425.8	gi|257052019|ref|YP_003129852.1|	-	5.8e-08	32.8	7.3	5.8e-08	32.8	5.0	1.9	2	0	0	2	2	2	1	Copper	resistance	protein	D
DUF4149	PF13664.1	gi|257052019|ref|YP_003129852.1|	-	1.1	9.3	6.4	2.9	7.9	4.4	1.9	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4149)
Ribosomal_S6e	PF01092.14	gi|257052020|ref|YP_003129853.1|	-	4.5e-40	136.2	0.3	5.2e-40	136.0	0.2	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S6e
CheF-arch	PF04283.7	gi|257052021|ref|YP_003129854.1|	-	2.9e-55	186.9	0.0	3.8e-55	186.4	0.0	1.1	1	0	0	1	1	1	1	Chemotaxis	signal	transduction	system	protein	F	from	archaea
GRAM	PF02893.15	gi|257052021|ref|YP_003129854.1|	-	0.02	14.3	0.0	0.11	12.0	0.0	2.1	2	0	0	2	2	2	0	GRAM	domain
CheF-arch	PF04283.7	gi|257052022|ref|YP_003129855.1|	-	1.5e-58	197.5	0.8	2.2e-58	197.1	0.5	1.1	1	0	0	1	1	1	1	Chemotaxis	signal	transduction	system	protein	F	from	archaea
bPH_4	PF06713.6	gi|257052022|ref|YP_003129855.1|	-	0.00022	20.9	0.0	0.00067	19.4	0.0	1.7	2	0	0	2	2	2	1	Bacterial	PH	domain
bPH_5	PF10882.3	gi|257052022|ref|YP_003129855.1|	-	0.015	15.0	0.2	5	6.9	0.0	2.8	2	1	1	3	3	3	0	Bacterial	PH	domain
HEAT_2	PF13646.1	gi|257052023|ref|YP_003129856.1|	-	2.5e-57	191.1	20.9	9.2e-18	64.3	0.0	5.3	2	1	3	5	5	5	5	HEAT	repeats
HEAT	PF02985.17	gi|257052023|ref|YP_003129856.1|	-	1.6e-25	86.8	13.4	0.0094	15.9	0.0	10.3	11	0	0	11	11	11	6	HEAT	repeat
HEAT_PBS	PF03130.11	gi|257052023|ref|YP_003129856.1|	-	5.7e-25	85.2	21.8	1.2e-05	25.3	0.7	9.0	10	0	0	10	10	10	6	PBS	lyase	HEAT-like	repeat
HEAT_EZ	PF13513.1	gi|257052023|ref|YP_003129856.1|	-	1.8e-22	79.1	26.8	0.0018	18.7	0.1	10.5	9	2	2	11	11	11	6	HEAT-like	repeat
Arm	PF00514.18	gi|257052023|ref|YP_003129856.1|	-	8.2e-12	44.4	0.1	2	8.3	0.0	8.9	8	1	1	9	9	9	2	Armadillo/beta-catenin-like	repeat
Adaptin_N	PF01602.15	gi|257052023|ref|YP_003129856.1|	-	2.7e-07	29.3	0.0	0.013	13.8	0.0	4.1	2	1	1	3	3	3	2	Adaptin	N	terminal	region
Cnd1	PF12717.2	gi|257052023|ref|YP_003129856.1|	-	0.0015	18.3	2.2	0.78	9.5	0.0	4.7	2	1	1	4	4	4	1	non-SMC	mitotic	condensation	complex	subunit	1
DnaG_DnaB_bind	PF08278.6	gi|257052023|ref|YP_003129856.1|	-	0.0027	17.9	3.7	1.7	8.8	0.2	2.9	2	1	0	2	2	2	2	DNA	primase	DnaG	DnaB-binding
Vac14_Fab1_bd	PF12755.2	gi|257052023|ref|YP_003129856.1|	-	0.015	15.6	0.0	71	3.8	0.0	4.1	3	1	1	4	4	4	0	Vacuolar	14	Fab1-binding	region
Imm16	PF15565.1	gi|257052023|ref|YP_003129856.1|	-	0.02	14.7	4.5	0.31	10.9	0.1	3.5	3	1	0	3	3	3	0	Immunity	protein	16
DUF3554	PF12074.3	gi|257052023|ref|YP_003129856.1|	-	0.12	11.7	0.0	0.39	10.0	0.0	1.8	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF3554)
FdhE	PF04216.7	gi|257052023|ref|YP_003129856.1|	-	1.7	8.3	7.6	13	5.3	0.2	3.1	2	1	1	3	3	3	0	Protein	involved	in	formate	dehydrogenase	formation
Cohesin_HEAT	PF12765.2	gi|257052023|ref|YP_003129856.1|	-	8.3	6.4	8.3	18	5.4	0.1	4.0	3	0	0	3	3	3	0	HEAT	repeat	associated	with	sister	chromatid	cohesion
UPF0147	PF03685.8	gi|257052023|ref|YP_003129856.1|	-	9.1	6.2	8.5	29	4.6	0.3	5.0	5	2	1	6	6	6	0	Uncharacterised	protein	family	(UPF0147)
CheR	PF01739.13	gi|257052024|ref|YP_003129857.1|	-	9.4e-50	168.6	0.0	1.2e-49	168.3	0.0	1.1	1	0	0	1	1	1	1	CheR	methyltransferase,	SAM	binding	domain
CheR_N	PF03705.10	gi|257052024|ref|YP_003129857.1|	-	2e-05	23.8	1.6	5.7e-05	22.4	0.8	2.0	2	0	0	2	2	2	1	CheR	methyltransferase,	all-alpha	domain
Methyltransf_18	PF12847.2	gi|257052024|ref|YP_003129857.1|	-	0.00023	21.6	0.0	0.00047	20.7	0.0	1.7	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|257052024|ref|YP_003129857.1|	-	0.00034	20.2	0.0	0.024	14.2	0.0	2.2	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|257052024|ref|YP_003129857.1|	-	0.00077	19.8	0.0	0.02	15.3	0.0	2.3	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|257052024|ref|YP_003129857.1|	-	0.0045	16.7	0.0	0.0074	16.0	0.0	1.4	1	1	0	1	1	1	1	Methyltransferase	domain
HATPase_c	PF02518.21	gi|257052025|ref|YP_003129858.1|	-	8.7e-24	83.3	0.9	6.7e-23	80.5	0.1	2.7	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Hpt	PF01627.18	gi|257052025|ref|YP_003129858.1|	-	8.8e-21	73.7	0.8	2.5e-20	72.2	0.1	2.2	2	0	0	2	2	2	1	Hpt	domain
CheW	PF01584.14	gi|257052025|ref|YP_003129858.1|	-	2.1e-20	72.5	0.4	2.1e-20	72.5	0.3	2.8	5	0	0	5	5	5	1	CheW-like	domain
H-kinase_dim	PF02895.9	gi|257052025|ref|YP_003129858.1|	-	3.5e-10	40.0	3.7	3.5e-10	40.0	2.6	2.2	2	0	0	2	2	2	1	Signal	transducing	histidine	kinase,	homodimeric	domain
P2	PF07194.6	gi|257052025|ref|YP_003129858.1|	-	2.1e-09	37.0	0.0	5.9e-09	35.6	0.0	1.8	1	0	0	1	1	1	1	P2	response	regulator	binding	domain
HATPase_c_2	PF13581.1	gi|257052025|ref|YP_003129858.1|	-	0.0014	18.3	0.1	0.0045	16.7	0.1	1.9	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HATPase_c_5	PF14501.1	gi|257052025|ref|YP_003129858.1|	-	0.021	14.5	0.0	0.15	11.8	0.0	2.3	1	1	0	1	1	1	0	GHKL	domain
CheB_methylest	PF01339.12	gi|257052026|ref|YP_003129859.1|	-	1.1e-62	210.6	1.9	2.7e-62	209.4	0.4	2.1	2	0	0	2	2	2	1	CheB	methylesterase
Response_reg	PF00072.19	gi|257052026|ref|YP_003129859.1|	-	1.8e-26	92.3	0.4	4.3e-26	91.1	0.3	1.6	1	0	0	1	1	1	1	Response	regulator	receiver	domain
OpuAC	PF04069.7	gi|257052026|ref|YP_003129859.1|	-	0.0071	15.7	0.1	0.42	9.9	0.0	2.4	2	0	0	2	2	2	2	Substrate	binding	domain	of	ABC-type	glycine	betaine	transport	system
CheW	PF01584.14	gi|257052027|ref|YP_003129860.1|	-	4.9e-28	97.3	0.5	5.3e-28	97.2	0.4	1.0	1	0	0	1	1	1	1	CheW-like	domain
KaiC	PF06745.8	gi|257052028|ref|YP_003129861.1|	-	8e-48	162.5	0.0	9.1e-48	162.3	0.0	1.0	1	0	0	1	1	1	1	KaiC
AAA_25	PF13481.1	gi|257052028|ref|YP_003129861.1|	-	1.4e-10	40.9	0.0	3.2e-10	39.7	0.0	1.5	1	1	1	2	2	2	1	AAA	domain
AAA_24	PF13479.1	gi|257052028|ref|YP_003129861.1|	-	0.00077	19.1	0.1	0.0021	17.7	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
AAA_14	PF13173.1	gi|257052028|ref|YP_003129861.1|	-	0.00084	19.2	0.2	0.0015	18.3	0.1	1.7	1	1	0	1	1	1	1	AAA	domain
DUF2075	PF09848.4	gi|257052028|ref|YP_003129861.1|	-	0.0021	17.0	0.0	0.0024	16.9	0.0	1.2	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2075)
DnaB_C	PF03796.10	gi|257052028|ref|YP_003129861.1|	-	0.012	14.5	0.0	0.04	12.7	0.0	1.6	1	1	0	2	2	2	0	DnaB-like	helicase	C	terminal	domain
Rad51	PF08423.6	gi|257052028|ref|YP_003129861.1|	-	0.019	13.8	0.4	0.024	13.5	0.3	1.4	1	1	0	1	1	1	0	Rad51
AAA_10	PF12846.2	gi|257052028|ref|YP_003129861.1|	-	0.057	12.8	0.9	0.12	11.7	0.6	1.6	1	1	0	1	1	1	0	AAA-like	domain
FtsK_SpoIIIE	PF01580.13	gi|257052028|ref|YP_003129861.1|	-	0.1	12.0	0.1	0.17	11.3	0.0	1.3	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
HTH_20	PF12840.2	gi|257052029|ref|YP_003129862.1|	-	2.6e-09	36.7	0.1	4.4e-09	36.0	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|257052029|ref|YP_003129862.1|	-	0.00093	18.5	0.0	0.0015	17.8	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.5	gi|257052029|ref|YP_003129862.1|	-	0.002	17.6	0.0	0.0041	16.6	0.0	1.6	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_27	PF13463.1	gi|257052029|ref|YP_003129862.1|	-	0.0047	17.2	0.1	0.007	16.6	0.1	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
MarR_2	PF12802.2	gi|257052029|ref|YP_003129862.1|	-	0.0067	16.0	0.1	0.011	15.4	0.1	1.3	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.7	gi|257052029|ref|YP_003129862.1|	-	0.0097	15.5	0.0	0.018	14.6	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
TrmB	PF01978.14	gi|257052029|ref|YP_003129862.1|	-	0.01	15.5	0.0	0.018	14.7	0.0	1.5	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
RDV-p3	PF09231.5	gi|257052029|ref|YP_003129862.1|	-	0.02	12.3	0.2	0.021	12.2	0.1	1.0	1	0	0	1	1	1	0	Rice	dwarf	virus	p3
HTH_AsnC-type	PF13404.1	gi|257052029|ref|YP_003129862.1|	-	0.061	12.8	0.0	0.14	11.6	0.0	1.7	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
Amastin	PF07344.6	gi|257052030|ref|YP_003129863.1|	-	0.13	11.8	1.9	0.19	11.3	1.3	1.2	1	0	0	1	1	1	0	Amastin	surface	glycoprotein
PsbQ	PF05757.6	gi|257052030|ref|YP_003129863.1|	-	0.15	11.4	0.9	0.18	11.2	0.6	1.1	1	0	0	1	1	1	0	Oxygen	evolving	enhancer	protein	3	(PsbQ)
DUF2499	PF10693.4	gi|257052030|ref|YP_003129863.1|	-	0.21	11.6	1.1	0.57	10.2	0.3	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2499)
Tetraspannin	PF00335.15	gi|257052030|ref|YP_003129863.1|	-	0.59	9.3	4.8	0.65	9.2	3.3	1.2	1	0	0	1	1	1	0	Tetraspanin	family
DUF3593	PF12159.3	gi|257052030|ref|YP_003129863.1|	-	1.1	9.1	4.3	0.22	11.3	0.7	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3593)
DUF202	PF02656.10	gi|257052030|ref|YP_003129863.1|	-	1.3	9.2	7.2	2.5	8.3	0.1	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF202)
DUF4605	PF15378.1	gi|257052030|ref|YP_003129863.1|	-	5.2	6.8	6.2	1.8	8.3	0.7	2.3	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4605)
Arch_flagellin	PF01917.11	gi|257052031|ref|YP_003129864.1|	-	1.8e-29	102.7	11.2	2.3e-29	102.3	7.8	1.1	1	0	0	1	1	1	1	Archaebacterial	flagellin
Arch_flagellin	PF01917.11	gi|257052032|ref|YP_003129865.1|	-	7.9e-31	107.1	11.2	9.1e-31	106.9	7.7	1.0	1	0	0	1	1	1	1	Archaebacterial	flagellin
PMT_2	PF13231.1	gi|257052035|ref|YP_003129868.1|	-	0.0011	18.8	10.4	0.0011	18.8	7.2	3.1	4	0	0	4	4	4	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
PrgI	PF12666.2	gi|257052035|ref|YP_003129868.1|	-	0.015	15.4	2.3	0.015	15.4	1.6	4.8	5	1	1	6	6	6	0	PrgI	family	protein
Response_reg	PF00072.19	gi|257052036|ref|YP_003129869.1|	-	5e-32	110.2	1.2	5.6e-32	110.0	0.8	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
QRPTase_C	PF01729.14	gi|257052036|ref|YP_003129869.1|	-	0.23	10.9	3.1	3.8	7.0	2.2	2.0	1	1	1	2	2	2	0	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
CheC	PF04509.7	gi|257052037|ref|YP_003129870.1|	-	4.9e-25	86.9	0.0	1.5e-11	43.8	0.0	2.4	2	0	0	2	2	2	2	CheC-like	family
CheX	PF13690.1	gi|257052037|ref|YP_003129870.1|	-	1.1e-15	57.1	0.7	1.7e-06	27.8	0.0	2.8	3	0	0	3	3	3	2	Chemotaxis	phosphatase	CheX
UCN2	PF11613.3	gi|257052037|ref|YP_003129870.1|	-	0.06	13.2	0.0	0.35	10.8	0.0	2.0	2	0	0	2	2	2	0	Agonist	of	corticotropin	releasing	factor	R2,	Urocortin-2
CheD	PF03975.8	gi|257052038|ref|YP_003129871.1|	-	7.7e-29	99.7	0.0	9.9e-29	99.4	0.0	1.2	1	0	0	1	1	1	1	CheD	chemotactic	sensory	transduction
Arch_fla_DE	PF04659.8	gi|257052039|ref|YP_003129872.1|	-	4.6e-29	100.1	0.0	1.1e-28	98.9	0.0	1.7	1	0	0	1	1	1	1	Archaeal	flagella	protein
FlaC_arch	PF05377.6	gi|257052039|ref|YP_003129872.1|	-	1.3e-21	76.2	1.4	1.3e-21	76.2	0.9	1.7	2	0	0	2	2	2	1	Flagella	accessory	protein	C	(FlaC)
DUF904	PF06005.7	gi|257052039|ref|YP_003129872.1|	-	0.041	14.1	0.5	0.086	13.1	0.4	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF904)
IncA	PF04156.9	gi|257052039|ref|YP_003129872.1|	-	0.19	11.3	0.0	0.19	11.3	0.0	1.7	2	0	0	2	2	2	0	IncA	protein
bZIP_1	PF00170.16	gi|257052039|ref|YP_003129872.1|	-	0.26	11.2	0.4	0.49	10.3	0.3	1.4	1	0	0	1	1	1	0	bZIP	transcription	factor
Laminin_II	PF06009.7	gi|257052039|ref|YP_003129872.1|	-	6.4	6.5	9.3	0.11	12.2	0.3	2.1	2	0	0	2	2	2	0	Laminin	Domain	II
Arch_flagellin	PF01917.11	gi|257052040|ref|YP_003129873.1|	-	8.4e-06	25.5	2.3	9e-06	25.4	1.6	1.1	1	0	0	1	1	1	1	Archaebacterial	flagellin
DUF4352	PF11611.3	gi|257052040|ref|YP_003129873.1|	-	0.003	17.6	0.4	0.004	17.2	0.3	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4352)
CARDB	PF07705.6	gi|257052040|ref|YP_003129873.1|	-	0.024	14.7	0.2	0.035	14.1	0.1	1.4	1	0	0	1	1	1	0	CARDB
Endonuc-MspI	PF09208.5	gi|257052040|ref|YP_003129873.1|	-	0.13	11.2	0.0	0.17	10.9	0.0	1.1	1	0	0	1	1	1	0	Restriction	endonuclease	MspI
Arch_flagellin	PF01917.11	gi|257052041|ref|YP_003129874.1|	-	3.6e-16	59.3	4.4	7e-16	58.4	3.1	1.5	1	1	0	1	1	1	1	Archaebacterial	flagellin
CARDB	PF07705.6	gi|257052041|ref|YP_003129874.1|	-	0.02	14.9	0.0	0.031	14.3	0.0	1.4	1	1	0	1	1	1	0	CARDB
KaiC	PF06745.8	gi|257052042|ref|YP_003129875.1|	-	8.1e-14	51.2	0.2	1.7e-13	50.2	0.1	1.5	1	1	0	1	1	1	1	KaiC
AAA_25	PF13481.1	gi|257052042|ref|YP_003129875.1|	-	3.5e-10	39.5	0.0	4.5e-10	39.2	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
UPF0079	PF02367.12	gi|257052042|ref|YP_003129875.1|	-	4.9e-05	22.9	0.1	0.00014	21.5	0.0	1.8	1	1	0	1	1	1	1	Uncharacterised	P-loop	hydrolase	UPF0079
NACHT	PF05729.7	gi|257052042|ref|YP_003129875.1|	-	0.00036	20.2	0.1	0.0043	16.7	0.0	2.0	1	1	0	1	1	1	1	NACHT	domain
AAA_22	PF13401.1	gi|257052042|ref|YP_003129875.1|	-	0.00095	19.3	0.1	0.002	18.3	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_18	PF13238.1	gi|257052042|ref|YP_003129875.1|	-	0.015	15.5	0.2	0.032	14.5	0.1	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_16	PF13191.1	gi|257052042|ref|YP_003129875.1|	-	0.024	14.6	0.1	0.074	13.0	0.1	2.0	1	1	0	1	1	1	0	AAA	ATPase	domain
MipZ	PF09140.6	gi|257052042|ref|YP_003129875.1|	-	0.043	12.8	0.0	0.073	12.1	0.0	1.3	1	0	0	1	1	1	0	ATPase	MipZ
AAA	PF00004.24	gi|257052042|ref|YP_003129875.1|	-	0.065	13.4	0.4	0.19	11.9	0.3	1.8	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
ArsA_ATPase	PF02374.10	gi|257052042|ref|YP_003129875.1|	-	0.069	12.1	0.2	0.14	11.2	0.0	1.6	1	1	0	1	1	1	0	Anion-transporting	ATPase
FF	PF01846.14	gi|257052042|ref|YP_003129875.1|	-	0.14	12.1	0.0	0.37	10.7	0.0	1.7	1	0	0	1	1	1	0	FF	domain
T2SE	PF00437.15	gi|257052043|ref|YP_003129876.1|	-	6.6e-44	149.8	0.0	9e-44	149.3	0.0	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_16	PF13191.1	gi|257052043|ref|YP_003129876.1|	-	0.0046	16.9	0.0	0.02	14.8	0.0	2.0	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_29	PF13555.1	gi|257052043|ref|YP_003129876.1|	-	0.0056	16.1	0.1	0.011	15.2	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
ABC_tran	PF00005.22	gi|257052043|ref|YP_003129876.1|	-	0.0062	16.8	0.0	0.043	14.1	0.0	2.2	2	0	0	2	2	2	1	ABC	transporter
AAA_22	PF13401.1	gi|257052043|ref|YP_003129876.1|	-	0.015	15.4	0.0	0.043	13.9	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
MobB	PF03205.9	gi|257052043|ref|YP_003129876.1|	-	0.055	13.1	0.0	0.12	12.0	0.0	1.6	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AIG1	PF04548.11	gi|257052043|ref|YP_003129876.1|	-	0.061	12.4	0.0	0.2	10.7	0.0	1.9	2	0	0	2	2	2	0	AIG1	family
FtsK_SpoIIIE	PF01580.13	gi|257052043|ref|YP_003129876.1|	-	0.077	12.4	0.0	0.15	11.4	0.0	1.4	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
Dynamin_N	PF00350.18	gi|257052043|ref|YP_003129876.1|	-	0.083	12.7	0.0	0.16	11.7	0.0	1.5	1	0	0	1	1	1	0	Dynamin	family
T2SF	PF00482.18	gi|257052044|ref|YP_003129877.1|	-	3.9e-16	59.0	8.0	1.6e-08	34.5	2.7	3.2	2	1	0	2	2	2	2	Type	II	secretion	system	(T2SS),	protein	F
AAA_32	PF13654.1	gi|257052044|ref|YP_003129877.1|	-	0.0027	16.4	0.1	0.0057	15.3	0.0	1.5	2	0	0	2	2	2	1	AAA	domain
Vma12	PF11712.3	gi|257052044|ref|YP_003129877.1|	-	1.4	8.5	4.7	3.5	7.3	0.5	3.2	3	1	0	3	3	3	0	Endoplasmic	reticulum-based	factor	for	assembly	of	V-ATPase
GtrA	PF04138.9	gi|257052046|ref|YP_003129879.1|	-	0.083	12.8	1.6	0.1	12.5	1.1	1.0	1	0	0	1	1	1	0	GtrA-like	protein
DHHA1	PF02272.14	gi|257052047|ref|YP_003129880.1|	-	0.00048	19.7	0.1	0.0017	17.9	0.1	1.9	1	0	0	1	1	1	1	DHHA1	domain
Usp	PF00582.21	gi|257052048|ref|YP_003129881.1|	-	6.6e-34	117.0	5.9	7.5e-34	116.9	4.1	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
VWA_2	PF13519.1	gi|257052048|ref|YP_003129881.1|	-	0.028	14.5	0.5	0.038	14.1	0.4	1.2	1	0	0	1	1	1	0	von	Willebrand	factor	type	A	domain
Acetyltransf_10	PF13673.1	gi|257052048|ref|YP_003129881.1|	-	0.037	14.1	0.2	0.048	13.7	0.2	1.3	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
DNA_photolyase	PF00875.13	gi|257052048|ref|YP_003129881.1|	-	0.049	13.3	0.2	0.074	12.8	0.1	1.2	1	0	0	1	1	1	0	DNA	photolyase
Usp	PF00582.21	gi|257052049|ref|YP_003129882.1|	-	1.4e-20	73.9	1.1	1.8e-20	73.5	0.8	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
Acetyltransf_1	PF00583.19	gi|257052050|ref|YP_003129883.1|	-	3.1e-16	59.1	0.0	6e-16	58.2	0.0	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_3	PF13302.1	gi|257052050|ref|YP_003129883.1|	-	2.6e-09	37.3	0.0	4e-09	36.7	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.1	gi|257052050|ref|YP_003129883.1|	-	5.2e-07	29.7	0.0	1.2e-06	28.5	0.0	1.5	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.1	gi|257052050|ref|YP_003129883.1|	-	1.1e-06	28.6	0.0	1.5e-06	28.2	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.1	gi|257052050|ref|YP_003129883.1|	-	1.6e-06	28.2	0.0	2.5e-06	27.5	0.0	1.3	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|257052050|ref|YP_003129883.1|	-	0.00021	20.9	0.0	0.00043	19.9	0.0	1.4	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_9	PF13527.1	gi|257052050|ref|YP_003129883.1|	-	0.0038	17.0	0.0	0.066	13.0	0.0	2.1	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.1	gi|257052050|ref|YP_003129883.1|	-	0.12	12.2	0.0	0.21	11.4	0.0	1.6	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Usp	PF00582.21	gi|257052051|ref|YP_003129884.1|	-	2.6e-16	60.0	0.6	3.8e-16	59.5	0.4	1.2	1	0	0	1	1	1	1	Universal	stress	protein	family
DAGK_cat	PF00781.19	gi|257052051|ref|YP_003129884.1|	-	0.12	11.8	0.1	0.35	10.3	0.1	1.8	1	1	0	1	1	1	0	Diacylglycerol	kinase	catalytic	domain
mIF3	PF14877.1	gi|257052051|ref|YP_003129884.1|	-	0.16	11.3	0.0	0.2	11.0	0.0	1.1	1	0	0	1	1	1	0	Mitochondrial	translation	initiation	factor
UPF0547	PF10571.4	gi|257052052|ref|YP_003129885.1|	-	0.009	15.6	0.1	0.016	14.9	0.1	1.4	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0547
Zn-ribbon_8	PF09723.5	gi|257052052|ref|YP_003129885.1|	-	0.13	12.2	0.1	0.31	11.0	0.1	1.7	1	0	0	1	1	1	0	Zinc	ribbon	domain
Amidohydro_4	PF13147.1	gi|257052053|ref|YP_003129886.1|	-	1.4e-32	113.8	17.8	1.9e-32	113.3	12.3	1.2	1	0	0	1	1	1	1	Amidohydrolase
Amidohydro_1	PF01979.15	gi|257052053|ref|YP_003129886.1|	-	6.7e-19	68.7	0.0	5.3e-18	65.7	0.0	2.0	1	1	0	1	1	1	1	Amidohydrolase	family
Amidohydro_5	PF13594.1	gi|257052053|ref|YP_003129886.1|	-	9.9e-13	47.7	1.8	2e-12	46.7	0.2	2.4	2	0	0	2	2	2	1	Amidohydrolase
Amidohydro_3	PF07969.6	gi|257052053|ref|YP_003129886.1|	-	3.7e-05	23.1	17.0	0.0052	16.0	9.0	3.0	2	1	0	2	2	2	2	Amidohydrolase	family
TatD_DNase	PF01026.16	gi|257052053|ref|YP_003129886.1|	-	0.0051	16.0	0.0	0.075	12.2	0.0	2.4	1	1	0	1	1	1	1	TatD	related	DNase
DHOase	PF12890.2	gi|257052053|ref|YP_003129886.1|	-	0.15	11.7	0.0	0.37	10.4	0.0	1.6	2	0	0	2	2	2	0	Dihydro-orotase-like
Acetyltransf_1	PF00583.19	gi|257052054|ref|YP_003129887.1|	-	6.5e-16	58.1	0.1	9.1e-16	57.6	0.1	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.1	gi|257052054|ref|YP_003129887.1|	-	5.5e-14	52.1	0.0	7.2e-14	51.7	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.1	gi|257052054|ref|YP_003129887.1|	-	6.2e-09	35.9	0.0	7.6e-09	35.7	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.1	gi|257052054|ref|YP_003129887.1|	-	3.3e-07	30.1	0.0	1.2e-06	28.3	0.0	1.7	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.1	gi|257052054|ref|YP_003129887.1|	-	1.3e-05	25.1	0.0	1.5e-05	24.9	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_6	PF13480.1	gi|257052054|ref|YP_003129887.1|	-	9.3e-05	22.4	0.1	0.00016	21.6	0.0	1.5	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
GNAT_acetyltr_2	PF13718.1	gi|257052054|ref|YP_003129887.1|	-	0.0024	17.2	0.0	0.0031	16.8	0.0	1.2	1	0	0	1	1	1	1	GNAT	acetyltransferase	2
Acetyltransf_3	PF13302.1	gi|257052054|ref|YP_003129887.1|	-	0.0033	17.5	0.0	0.0043	17.2	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|257052054|ref|YP_003129887.1|	-	0.0065	16.2	0.0	0.0093	15.7	0.0	1.2	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_8	PF13523.1	gi|257052054|ref|YP_003129887.1|	-	0.015	15.1	0.0	0.023	14.5	0.0	1.4	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Isochorismatase	PF00857.15	gi|257052055|ref|YP_003129888.1|	-	2.8e-47	160.8	0.1	3.1e-47	160.7	0.0	1.0	1	0	0	1	1	1	1	Isochorismatase	family
Peptidase_MA_2	PF13485.1	gi|257052056|ref|YP_003129889.1|	-	0.00019	21.4	0.0	0.00056	19.9	0.0	1.8	1	0	0	1	1	1	1	Peptidase	MA	superfamily
DUF1510	PF07423.6	gi|257052056|ref|YP_003129889.1|	-	0.36	10.1	17.8	23	4.2	12.8	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1510)
Hid1	PF12722.2	gi|257052056|ref|YP_003129889.1|	-	2.4	5.7	4.8	3.7	5.1	3.3	1.3	1	0	0	1	1	1	0	High-temperature-induced	dauer-formation	protein
MSA-2c	PF12238.3	gi|257052056|ref|YP_003129889.1|	-	2.5	7.7	13.8	5.2	6.6	9.6	1.6	1	0	0	1	1	1	0	Merozoite	surface	antigen	2c
Nop14	PF04147.7	gi|257052056|ref|YP_003129889.1|	-	6.2	4.6	19.3	8.6	4.1	13.4	1.1	1	0	0	1	1	1	0	Nop14-like	family
Peptidase_M76	PF09768.4	gi|257052057|ref|YP_003129890.1|	-	0.0024	17.3	0.1	0.0038	16.7	0.0	1.2	1	0	0	1	1	1	1	Peptidase	M76	family
Peptidase_MA_2	PF13485.1	gi|257052057|ref|YP_003129890.1|	-	0.0043	17.0	0.0	0.014	15.4	0.0	1.9	1	0	0	1	1	1	1	Peptidase	MA	superfamily
PIN	PF01850.16	gi|257052058|ref|YP_003129891.1|	-	0.016	15.4	0.1	0.019	15.3	0.1	1.1	1	0	0	1	1	1	0	PIN	domain
Antitoxin-MazE	PF04014.13	gi|257052059|ref|YP_003129892.1|	-	7.1e-12	44.7	0.2	1.2e-11	44.0	0.1	1.3	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
ANT	PF03374.9	gi|257052059|ref|YP_003129892.1|	-	0.077	13.0	0.0	0.15	12.1	0.0	1.5	1	0	0	1	1	1	0	Phage	antirepressor	protein	KilAC	domain
QRPTase_C	PF01729.14	gi|257052060|ref|YP_003129893.1|	-	3.2e-16	59.2	0.0	4.8e-16	58.7	0.0	1.3	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
QRPTase_N	PF02749.11	gi|257052060|ref|YP_003129893.1|	-	6.3e-05	22.7	0.0	0.00016	21.4	0.0	1.7	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
HATPase_c	PF02518.21	gi|257052061|ref|YP_003129894.1|	-	7.9e-15	54.5	0.0	1.8e-14	53.3	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.1	gi|257052061|ref|YP_003129894.1|	-	1.4e-13	50.7	0.0	3.4e-13	49.4	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
PAS_4	PF08448.5	gi|257052061|ref|YP_003129894.1|	-	6.7e-08	32.5	0.2	2.3e-07	30.8	0.2	2.0	1	1	0	1	1	1	1	PAS	fold
PAS	PF00989.19	gi|257052061|ref|YP_003129894.1|	-	9.4e-05	22.1	0.0	0.00023	20.8	0.0	1.7	1	0	0	1	1	1	1	PAS	fold
PAS_9	PF13426.1	gi|257052061|ref|YP_003129894.1|	-	0.007	16.7	0.0	0.017	15.5	0.0	1.8	1	1	0	1	1	1	1	PAS	domain
HATPase_c_3	PF13589.1	gi|257052061|ref|YP_003129894.1|	-	0.0094	15.6	0.0	0.022	14.3	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_8	PF13188.1	gi|257052061|ref|YP_003129894.1|	-	0.022	14.6	0.0	0.057	13.3	0.0	1.7	1	0	0	1	1	1	0	PAS	domain
DUF2009	PF09418.5	gi|257052061|ref|YP_003129894.1|	-	0.1	11.3	0.8	0.15	10.8	0.6	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2009)
DHDPS	PF00701.17	gi|257052062|ref|YP_003129895.1|	-	7.6e-94	313.5	0.0	8.5e-94	313.3	0.0	1.0	1	0	0	1	1	1	1	Dihydrodipicolinate	synthetase	family
PEP_mutase	PF13714.1	gi|257052062|ref|YP_003129895.1|	-	0.00057	19.1	0.2	0.00082	18.6	0.1	1.3	1	0	0	1	1	1	1	Phosphoenolpyruvate	phosphomutase
ThiG	PF05690.9	gi|257052062|ref|YP_003129895.1|	-	0.018	14.1	0.0	0.031	13.3	0.0	1.3	1	0	0	1	1	1	0	Thiazole	biosynthesis	protein	ThiG
DapB_C	PF05173.9	gi|257052063|ref|YP_003129896.1|	-	5.8e-38	129.6	0.0	8.4e-38	129.1	0.0	1.3	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	C-terminus
DapB_N	PF01113.15	gi|257052063|ref|YP_003129896.1|	-	2e-26	92.3	0.8	3.7e-26	91.4	0.5	1.5	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
Saccharop_dh	PF03435.13	gi|257052063|ref|YP_003129896.1|	-	0.0005	19.1	0.9	0.00097	18.2	0.6	1.5	1	1	0	1	1	1	1	Saccharopine	dehydrogenase
Peripla_BP_6	PF13458.1	gi|257052063|ref|YP_003129896.1|	-	0.0057	16.0	2.4	0.009	15.4	1.5	1.5	1	1	0	1	1	1	1	Periplasmic	binding	protein
GFO_IDH_MocA	PF01408.17	gi|257052063|ref|YP_003129896.1|	-	0.0068	16.9	0.2	0.013	16.0	0.1	1.4	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Epimerase	PF01370.16	gi|257052063|ref|YP_003129896.1|	-	0.073	12.4	0.1	0.18	11.2	0.1	1.7	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
NAD_binding_3	PF03447.11	gi|257052063|ref|YP_003129896.1|	-	0.08	13.3	0.3	0.16	12.3	0.2	1.5	1	0	0	1	1	1	0	Homoserine	dehydrogenase,	NAD	binding	domain
RmlD_sub_bind	PF04321.12	gi|257052063|ref|YP_003129896.1|	-	0.12	11.2	1.0	0.64	8.8	0.7	2.0	1	1	0	1	1	1	0	RmlD	substrate	binding	domain
THDPS_N_2	PF14805.1	gi|257052064|ref|YP_003129897.1|	-	1.3e-20	73.0	0.5	1.9e-20	72.4	0.3	1.3	1	0	0	1	1	1	1	Tetrahydrodipicolinate	N-succinyltransferase	N-terminal
Hexapep	PF00132.19	gi|257052064|ref|YP_003129897.1|	-	8.1e-13	47.2	8.5	5.4e-06	25.6	2.2	3.3	3	0	0	3	3	3	3	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.1	gi|257052064|ref|YP_003129897.1|	-	0.00024	20.6	17.0	0.016	14.7	0.7	2.9	3	0	0	3	3	3	2	Hexapeptide	repeat	of	succinyl-transferase
PIN	PF01850.16	gi|257052065|ref|YP_003129898.1|	-	3.1e-10	40.4	3.8	3.6e-10	40.2	2.6	1.1	1	0	0	1	1	1	1	PIN	domain
Antitoxin-MazE	PF04014.13	gi|257052066|ref|YP_003129899.1|	-	0.0031	17.1	0.8	0.0055	16.3	0.6	1.4	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
Malate_DH	PF12434.3	gi|257052066|ref|YP_003129899.1|	-	0.012	15.3	0.5	0.025	14.2	0.3	1.5	1	0	0	1	1	1	0	Malate	dehydrogenase	enzyme
DUF936	PF06075.7	gi|257052067|ref|YP_003129900.1|	-	0.22	10.4	4.6	0.28	10.0	3.2	1.1	1	0	0	1	1	1	0	Plant	protein	of	unknown	function	(DUF936)
RNase_HII	PF01351.13	gi|257052068|ref|YP_003129901.1|	-	1.2e-38	132.7	0.1	1.4e-38	132.5	0.0	1.0	1	0	0	1	1	1	1	Ribonuclease	HII
THUMP	PF02926.12	gi|257052069|ref|YP_003129902.1|	-	2.4e-09	37.2	0.0	4.6e-09	36.3	0.0	1.4	1	0	0	1	1	1	1	THUMP	domain
DnaJ_CXXCXGXG	PF00684.14	gi|257052069|ref|YP_003129902.1|	-	0.012	15.6	1.5	0.012	15.6	1.1	2.7	3	0	0	3	3	3	0	DnaJ	central	domain
CheF-arch	PF04283.7	gi|257052070|ref|YP_003129903.1|	-	5.1e-36	123.9	0.0	9.6e-36	123.0	0.0	1.4	1	1	0	1	1	1	1	Chemotaxis	signal	transduction	system	protein	F	from	archaea
TrmB	PF01978.14	gi|257052070|ref|YP_003129903.1|	-	0.033	13.8	0.2	0.073	12.7	0.1	1.5	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
PASTA	PF03793.14	gi|257052070|ref|YP_003129903.1|	-	0.091	12.4	0.1	0.6	9.8	0.0	2.3	2	0	0	2	2	2	0	PASTA	domain
Glyco_hydro_10	PF00331.15	gi|257052071|ref|YP_003129904.1|	-	1.7e-36	125.8	1.6	2.8e-36	125.1	1.1	1.2	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	10
CarboxypepD_reg	PF13620.1	gi|257052071|ref|YP_003129904.1|	-	0.0028	17.6	1.0	0.82	9.7	0.0	2.5	2	0	0	2	2	2	2	Carboxypeptidase	regulatory-like	domain
TAT_signal	PF10518.4	gi|257052071|ref|YP_003129904.1|	-	0.0052	16.6	1.7	0.015	15.2	1.2	1.8	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Unstab_antitox	PF09720.5	gi|257052071|ref|YP_003129904.1|	-	0.069	12.8	2.2	0.27	10.9	1.5	2.0	1	0	0	1	1	1	0	Putative	addiction	module	component
Myosin_tail_1	PF01576.14	gi|257052072|ref|YP_003129905.1|	-	3.1e-07	28.5	24.2	4.2e-07	28.1	16.8	1.0	1	0	0	1	1	1	1	Myosin	tail
IFT57	PF10498.4	gi|257052072|ref|YP_003129905.1|	-	8.8e-06	24.6	16.3	1.8e-05	23.7	11.3	1.4	1	0	0	1	1	1	1	Intra-flagellar	transport	protein	57
Reo_sigmaC	PF04582.7	gi|257052072|ref|YP_003129905.1|	-	0.0017	17.6	14.9	0.0017	17.6	10.3	2.5	1	1	1	2	2	2	2	Reovirus	sigma	C	capsid	protein
AAA_13	PF13166.1	gi|257052072|ref|YP_003129905.1|	-	0.0033	15.9	25.2	0.0047	15.4	10.1	2.1	1	1	1	2	2	2	1	AAA	domain
CENP-F_leu_zip	PF10473.4	gi|257052072|ref|YP_003129905.1|	-	0.004	17.0	19.4	0.004	17.0	13.5	2.3	1	1	1	2	2	2	1	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Tropomyosin	PF00261.15	gi|257052072|ref|YP_003129905.1|	-	0.0056	15.7	29.7	0.014	14.5	11.1	2.2	1	1	1	2	2	2	2	Tropomyosin
DUF3584	PF12128.3	gi|257052072|ref|YP_003129905.1|	-	0.0062	13.9	26.2	0.0092	13.3	18.2	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3584)
Spc7	PF08317.6	gi|257052072|ref|YP_003129905.1|	-	0.0062	15.2	27.3	0.035	12.7	2.9	2.3	1	1	1	2	2	2	2	Spc7	kinetochore	protein
WEMBL	PF05701.6	gi|257052072|ref|YP_003129905.1|	-	0.0078	14.7	24.9	0.011	14.1	17.3	1.1	1	0	0	1	1	1	1	Weak	chloroplast	movement	under	blue	light
Cast	PF10174.4	gi|257052072|ref|YP_003129905.1|	-	0.016	13.2	26.6	0.022	12.8	18.4	1.1	1	0	0	1	1	1	0	RIM-binding	protein	of	the	cytomatrix	active	zone
Pox_A_type_inc	PF04508.7	gi|257052072|ref|YP_003129905.1|	-	0.018	14.7	4.6	34	4.5	0.1	4.6	4	0	0	4	4	4	0	Viral	A-type	inclusion	protein	repeat
Phage_GP20	PF06810.6	gi|257052072|ref|YP_003129905.1|	-	0.036	13.5	24.8	0.13	11.7	2.5	2.7	1	1	2	3	3	3	0	Phage	minor	structural	protein	GP20
DUF948	PF06103.6	gi|257052072|ref|YP_003129905.1|	-	0.072	12.9	17.7	0.037	13.8	3.5	3.7	1	1	3	4	4	4	0	Bacterial	protein	of	unknown	function	(DUF948)
DUF812	PF05667.6	gi|257052072|ref|YP_003129905.1|	-	0.12	10.8	20.7	0.23	9.9	14.3	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF812)
CCDC155	PF14662.1	gi|257052072|ref|YP_003129905.1|	-	0.17	11.4	29.0	0.12	11.9	12.7	2.3	1	1	1	2	2	2	0	Coiled-coil	region	of	CCDC155
CCDC144C	PF14915.1	gi|257052072|ref|YP_003129905.1|	-	0.21	10.5	27.2	0.32	9.8	18.9	1.2	1	0	0	1	1	1	0	CCDC144C	protein	coiled-coil	region
TMF_DNA_bd	PF12329.3	gi|257052072|ref|YP_003129905.1|	-	0.29	10.9	41.6	0.39	10.5	10.2	3.5	2	1	1	3	3	3	0	TATA	element	modulatory	factor	1	DNA	binding
ATG16	PF08614.6	gi|257052072|ref|YP_003129905.1|	-	0.38	10.5	32.4	0.63	9.8	3.9	2.3	1	1	1	2	2	2	0	Autophagy	protein	16	(ATG16)
DUF4201	PF13870.1	gi|257052072|ref|YP_003129905.1|	-	0.39	10.1	18.7	1.3	8.4	12.9	1.9	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4201)
Fib_alpha	PF08702.5	gi|257052072|ref|YP_003129905.1|	-	0.41	10.7	21.6	0.16	12.0	7.9	2.3	1	1	1	2	2	2	0	Fibrinogen	alpha/beta	chain	family
NYD-SP28	PF14772.1	gi|257052072|ref|YP_003129905.1|	-	0.48	10.5	18.3	2.6	8.1	6.6	2.9	1	1	1	2	2	2	0	Sperm	tail
Filament	PF00038.16	gi|257052072|ref|YP_003129905.1|	-	0.5	9.7	29.6	1.6	8.1	11.0	2.3	1	1	1	2	2	2	0	Intermediate	filament	protein
DUF3552	PF12072.3	gi|257052072|ref|YP_003129905.1|	-	0.54	9.4	28.0	0.17	11.0	3.2	2.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3552)
Laminin_I	PF06008.9	gi|257052072|ref|YP_003129905.1|	-	0.66	9.2	28.8	0.12	11.6	3.4	2.5	1	1	1	2	2	2	0	Laminin	Domain	I
ERM	PF00769.14	gi|257052072|ref|YP_003129905.1|	-	0.75	9.2	25.7	1.3	8.4	17.8	1.3	1	0	0	1	1	1	0	Ezrin/radixin/moesin	family
Tup_N	PF08581.5	gi|257052072|ref|YP_003129905.1|	-	1.1	9.5	14.8	0.87	9.8	0.3	3.1	2	1	1	3	3	3	0	Tup	N-terminal
COG2	PF06148.6	gi|257052072|ref|YP_003129905.1|	-	1.2	9.0	15.1	1.4	8.7	1.2	3.3	1	1	2	3	3	3	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
DUF869	PF05911.6	gi|257052072|ref|YP_003129905.1|	-	1.7	6.7	28.4	0.2	9.8	2.7	2.6	1	1	2	3	3	3	0	Plant	protein	of	unknown	function	(DUF869)
DUF4200	PF13863.1	gi|257052072|ref|YP_003129905.1|	-	1.9	8.4	25.7	3	7.8	9.7	2.4	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4200)
FlxA	PF14282.1	gi|257052072|ref|YP_003129905.1|	-	2.3	8.1	38.9	4.2	7.3	9.0	3.4	1	1	2	3	3	3	0	FlxA-like	protein
TPR_MLP1_2	PF07926.7	gi|257052072|ref|YP_003129905.1|	-	2.4	7.9	34.8	5.1	6.8	17.1	2.7	1	1	1	2	2	2	0	TPR/MLP1/MLP2-like	protein
Syntaxin-6_N	PF09177.6	gi|257052072|ref|YP_003129905.1|	-	2.9	8.3	25.4	9.1	6.7	2.2	3.6	1	1	2	3	3	3	0	Syntaxin	6,	N-terminal
HrpB7	PF09486.5	gi|257052072|ref|YP_003129905.1|	-	3.6	7.4	15.0	19	5.1	9.4	2.3	1	1	1	2	2	2	0	Bacterial	type	III	secretion	protein	(HrpB7)
V-SNARE	PF05008.10	gi|257052072|ref|YP_003129905.1|	-	3.9	7.7	27.1	9.7	6.4	0.7	3.8	2	2	1	3	3	3	0	Vesicle	transport	v-SNARE	protein	N-terminus
RBD-FIP	PF09457.5	gi|257052072|ref|YP_003129905.1|	-	5.3	6.9	9.9	36	4.2	0.0	3.9	3	1	1	4	4	3	0	FIP	domain
Atg14	PF10186.4	gi|257052072|ref|YP_003129905.1|	-	5.4	5.8	20.8	5	5.9	3.1	2.2	1	1	1	2	2	2	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
YlqD	PF11068.3	gi|257052072|ref|YP_003129905.1|	-	6.2	6.8	24.4	51	3.9	8.4	3.1	1	1	1	2	2	2	0	YlqD	protein
DUF641	PF04859.7	gi|257052072|ref|YP_003129905.1|	-	6.7	6.4	20.9	6	6.6	2.5	3.4	2	1	0	3	3	2	0	Plant	protein	of	unknown	function	(DUF641)
ADIP	PF11559.3	gi|257052072|ref|YP_003129905.1|	-	7.4	6.4	31.9	4.1	7.2	3.6	3.2	1	1	1	2	2	2	0	Afadin-	and	alpha	-actinin-Binding
DUF1423	PF07227.6	gi|257052072|ref|YP_003129905.1|	-	7.4	5.1	13.6	11	4.4	9.4	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1423)
DUF572	PF04502.8	gi|257052072|ref|YP_003129905.1|	-	7.5	5.6	18.5	11	5.1	12.8	1.1	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF572)
TMPIT	PF07851.8	gi|257052072|ref|YP_003129905.1|	-	8.7	5.3	19.4	5.6	5.9	5.1	2.3	1	1	1	2	2	2	0	TMPIT-like	protein
CheF-arch	PF04283.7	gi|257052073|ref|YP_003129906.1|	-	5.3e-54	182.7	0.4	8.2e-54	182.1	0.3	1.2	1	0	0	1	1	1	1	Chemotaxis	signal	transduction	system	protein	F	from	archaea
DUF1080	PF06439.6	gi|257052073|ref|YP_003129906.1|	-	0.021	14.6	0.2	1.4	8.7	0.0	2.1	1	1	0	2	2	2	0	Domain	of	Unknown	Function	(DUF1080)
NTP_transferase	PF00483.18	gi|257052074|ref|YP_003129907.1|	-	2.7e-37	128.4	0.0	3.3e-37	128.1	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.2	gi|257052074|ref|YP_003129907.1|	-	6.7e-19	68.5	0.3	3.1e-18	66.3	0.0	2.1	2	0	0	2	2	2	1	MobA-like	NTP	transferase	domain
Hexapep	PF00132.19	gi|257052074|ref|YP_003129907.1|	-	2.1e-13	49.1	15.3	2.9e-07	29.6	4.0	5.0	2	1	2	5	5	5	4	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.1	gi|257052074|ref|YP_003129907.1|	-	2.3e-05	23.8	15.0	0.0049	16.4	0.5	4.5	2	1	4	6	6	6	5	Hexapeptide	repeat	of	succinyl-transferase
IspD	PF01128.14	gi|257052074|ref|YP_003129907.1|	-	0.0015	18.1	0.0	0.0027	17.2	0.0	1.5	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
DUF1028	PF06267.7	gi|257052074|ref|YP_003129907.1|	-	0.039	13.3	0.0	0.096	12.1	0.0	1.6	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF1028)
Glycos_transf_2	PF00535.21	gi|257052074|ref|YP_003129907.1|	-	0.12	12.0	0.0	0.23	11.1	0.0	1.5	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
SIS	PF01380.17	gi|257052075|ref|YP_003129908.1|	-	5.8e-52	174.7	0.3	7.2e-25	87.1	0.0	2.3	2	0	0	2	2	2	2	SIS	domain
GATase_6	PF13522.1	gi|257052075|ref|YP_003129908.1|	-	1.9e-23	82.8	0.0	4.1e-23	81.7	0.0	1.5	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_7	PF13537.1	gi|257052075|ref|YP_003129908.1|	-	5.8e-19	68.0	0.0	1.1e-18	67.1	0.0	1.5	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_2	PF00310.16	gi|257052075|ref|YP_003129908.1|	-	8.1e-19	67.5	0.0	1.7e-13	50.0	0.0	2.6	2	1	1	3	3	3	2	Glutamine	amidotransferases	class-II
DUF4154	PF13689.1	gi|257052075|ref|YP_003129908.1|	-	0.0035	16.9	0.0	0.01	15.4	0.0	1.7	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4154)
GATase_4	PF13230.1	gi|257052075|ref|YP_003129908.1|	-	0.0043	15.7	0.0	0.0071	15.0	0.0	1.3	1	0	0	1	1	1	1	Glutamine	amidotransferases	class-II
DUF3812	PF12757.2	gi|257052075|ref|YP_003129908.1|	-	0.047	13.6	0.0	0.093	12.7	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3812)
SIS_2	PF13580.1	gi|257052075|ref|YP_003129908.1|	-	0.071	12.8	0.1	0.21	11.2	0.0	1.9	2	0	0	2	2	2	0	SIS	domain
CPSase_L_chain	PF00289.17	gi|257052075|ref|YP_003129908.1|	-	0.077	13.1	0.9	22	5.2	0.0	3.1	3	0	0	3	3	3	0	Carbamoyl-phosphate	synthase	L	chain,	N-terminal	domain
Abdominal-A	PF12407.3	gi|257052075|ref|YP_003129908.1|	-	0.53	9.8	1.5	1.7	8.1	0.1	2.2	2	0	0	2	2	2	0	Homeobox	protein
DUF4330	PF14221.1	gi|257052077|ref|YP_003129910.1|	-	1.1e-36	126.2	1.8	1.3e-36	125.9	1.3	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4330)
Bac_transf	PF02397.11	gi|257052078|ref|YP_003129911.1|	-	5.2e-62	208.2	0.0	7.6e-62	207.7	0.0	1.2	1	0	0	1	1	1	1	Bacterial	sugar	transferase
OrfB_Zn_ribbon	PF07282.6	gi|257052079|ref|YP_003129912.1|	-	1.5e-24	85.4	0.6	3.3e-24	84.3	0.4	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.14	gi|257052079|ref|YP_003129912.1|	-	6.1e-16	58.5	0.0	8.5e-16	58.0	0.0	1.1	1	0	0	1	1	1	1	Probable	transposase
DCAF15_WD40	PF14939.1	gi|257052079|ref|YP_003129912.1|	-	0.07	12.4	0.3	0.11	11.7	0.2	1.2	1	0	0	1	1	1	0	DDB1-and	CUL4-substrate	receptor	15,	WD	repeat
DZR	PF12773.2	gi|257052079|ref|YP_003129912.1|	-	0.1	12.4	4.5	0.067	13.0	1.6	1.8	2	0	0	2	2	2	0	Double	zinc	ribbon
DUF2387	PF09526.5	gi|257052079|ref|YP_003129912.1|	-	0.14	12.1	1.5	1.8	8.5	0.1	2.6	1	1	1	2	2	2	0	Probable	metal-binding	protein	(DUF2387)
zinc_ribbon_2	PF13240.1	gi|257052079|ref|YP_003129912.1|	-	6	6.4	7.6	30	4.2	0.4	2.6	2	1	1	3	3	3	0	zinc-ribbon	domain
Epimerase	PF01370.16	gi|257052080|ref|YP_003129913.1|	-	9.6e-65	218.3	0.1	1.1e-64	218.0	0.1	1.0	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.14	gi|257052080|ref|YP_003129913.1|	-	1.7e-22	79.4	0.0	2.3e-22	79.0	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.12	gi|257052080|ref|YP_003129913.1|	-	2.4e-19	69.3	0.2	3e-19	69.0	0.1	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Polysacc_synt_2	PF02719.10	gi|257052080|ref|YP_003129913.1|	-	2.4e-15	56.2	0.1	1.8e-14	53.3	0.0	2.1	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.7	gi|257052080|ref|YP_003129913.1|	-	4.5e-13	48.7	0.1	5.2e-10	38.6	0.0	2.5	2	1	0	2	2	2	1	Male	sterility	protein
adh_short	PF00106.20	gi|257052080|ref|YP_003129913.1|	-	4.2e-10	39.7	1.0	8.3e-10	38.8	0.7	1.4	1	0	0	1	1	1	1	short	chain	dehydrogenase
NAD_binding_10	PF13460.1	gi|257052080|ref|YP_003129913.1|	-	1.8e-09	37.8	1.5	3.3e-09	36.9	1.1	1.5	1	1	0	1	1	1	1	NADH(P)-binding
KR	PF08659.5	gi|257052080|ref|YP_003129913.1|	-	7.6e-05	22.4	1.0	0.0014	18.2	0.7	2.4	1	1	0	1	1	1	1	KR	domain
NmrA	PF05368.8	gi|257052080|ref|YP_003129913.1|	-	0.00043	19.6	0.3	0.00075	18.8	0.2	1.4	1	0	0	1	1	1	1	NmrA-like	family
Epimerase_Csub	PF13950.1	gi|257052080|ref|YP_003129913.1|	-	0.00091	19.1	0.0	0.0024	17.7	0.0	1.7	2	0	0	2	2	2	1	UDP-glucose	4-epimerase	C-term	subunit
TrkA_N	PF02254.13	gi|257052080|ref|YP_003129913.1|	-	0.0025	17.8	0.9	0.0073	16.3	0.1	2.0	2	0	0	2	2	2	1	TrkA-N	domain
Toxin_47	PF15527.1	gi|257052080|ref|YP_003129913.1|	-	0.13	12.0	1.1	0.23	11.2	0.3	1.8	2	0	0	2	2	2	0	Putative	toxin	47
eIF-6	PF01912.13	gi|257052081|ref|YP_003129914.1|	-	2.7e-70	235.5	0.0	3.1e-70	235.3	0.0	1.0	1	0	0	1	1	1	1	eIF-6	family
Ribosomal_L31e	PF01198.14	gi|257052082|ref|YP_003129915.1|	-	6e-24	83.5	0.0	6.4e-24	83.4	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L31e
Ribosomal_L39	PF00832.15	gi|257052083|ref|YP_003129916.1|	-	1.2e-21	75.8	6.7	1.5e-21	75.5	4.6	1.1	1	0	0	1	1	1	1	Ribosomal	L39	protein
Zip	PF02535.17	gi|257052084|ref|YP_003129917.1|	-	2.6e-20	72.6	17.0	7.1e-20	71.2	1.3	2.9	1	1	1	2	2	2	2	ZIP	Zinc	transporter
LigT_PEase	PF02834.11	gi|257052085|ref|YP_003129918.1|	-	3e-22	78.4	0.0	1.5e-13	50.5	0.0	2.1	2	0	0	2	2	2	2	LigT	like	Phosphoesterase
2_5_RNA_ligase2	PF13563.1	gi|257052085|ref|YP_003129918.1|	-	1.1e-17	64.1	0.0	1.4e-17	63.8	0.0	1.1	1	0	0	1	1	1	1	2'-5'	RNA	ligase	superfamily
AKAP7_NLS	PF10469.4	gi|257052085|ref|YP_003129918.1|	-	2e-07	30.9	0.0	2.1e-07	30.8	0.0	1.1	1	0	0	1	1	1	1	AKAP7	2'5'	RNA	ligase-like	domain
HVSL	PF09749.4	gi|257052085|ref|YP_003129918.1|	-	0.0064	15.5	0.0	0.0079	15.2	0.0	1.1	1	0	0	1	1	1	1	Uncharacterised	conserved	protein
CPDase	PF07823.6	gi|257052085|ref|YP_003129918.1|	-	0.082	12.3	0.0	0.12	11.8	0.0	1.2	1	0	0	1	1	1	0	Cyclic	phosphodiesterase-like	protein
TPR_11	PF13414.1	gi|257052086|ref|YP_003129919.1|	-	4.6e-39	131.9	30.5	6.5e-14	51.3	2.7	3.1	1	1	3	4	4	4	4	TPR	repeat
TPR_1	PF00515.23	gi|257052086|ref|YP_003129919.1|	-	2e-24	84.1	7.8	1.9e-08	33.5	0.2	4.9	5	0	0	5	5	5	4	Tetratricopeptide	repeat
TPR_2	PF07719.12	gi|257052086|ref|YP_003129919.1|	-	1.9e-22	77.3	17.9	2.8e-06	26.8	0.6	5.1	5	0	0	5	5	5	5	Tetratricopeptide	repeat
TPR_16	PF13432.1	gi|257052086|ref|YP_003129919.1|	-	2.4e-19	69.4	19.8	1.7e-10	41.2	1.3	3.2	2	1	1	3	3	3	3	Tetratricopeptide	repeat
TPR_14	PF13428.1	gi|257052086|ref|YP_003129919.1|	-	9.1e-16	56.9	22.8	2.3e-05	24.6	0.3	5.2	1	1	4	5	5	5	5	Tetratricopeptide	repeat
TPR_17	PF13431.1	gi|257052086|ref|YP_003129919.1|	-	3.4e-15	54.8	3.7	0.00012	22.0	0.0	4.6	4	0	0	4	4	4	3	Tetratricopeptide	repeat
TPR_8	PF13181.1	gi|257052086|ref|YP_003129919.1|	-	5.1e-15	54.0	2.3	0.00019	20.9	0.1	5.0	5	0	0	5	5	5	3	Tetratricopeptide	repeat
TPR_12	PF13424.1	gi|257052086|ref|YP_003129919.1|	-	5.9e-15	54.9	18.8	1.1e-07	31.6	3.7	3.6	1	1	2	3	3	3	3	Tetratricopeptide	repeat
TPR_9	PF13371.1	gi|257052086|ref|YP_003129919.1|	-	1.8e-11	43.7	12.7	2.8e-05	23.9	0.6	3.3	1	1	2	3	3	3	3	Tetratricopeptide	repeat
TPR_19	PF14559.1	gi|257052086|ref|YP_003129919.1|	-	3.2e-10	40.2	6.3	1.3e-05	25.4	0.5	3.5	2	1	2	4	4	4	3	Tetratricopeptide	repeat
TPR_7	PF13176.1	gi|257052086|ref|YP_003129919.1|	-	1.3e-09	37.0	15.5	0.0056	16.3	0.2	5.1	5	0	0	5	5	5	4	Tetratricopeptide	repeat
TPR_6	PF13174.1	gi|257052086|ref|YP_003129919.1|	-	1.4e-07	31.5	9.4	0.44	11.1	0.1	4.9	5	0	0	5	5	5	3	Tetratricopeptide	repeat
TPR_10	PF13374.1	gi|257052086|ref|YP_003129919.1|	-	3.8e-05	23.4	24.2	0.0023	17.7	0.6	4.5	4	0	0	4	4	4	3	Tetratricopeptide	repeat
Apc3	PF12895.2	gi|257052086|ref|YP_003129919.1|	-	0.00031	20.8	0.7	0.084	13.0	0.0	2.7	1	1	3	4	4	4	2	Anaphase-promoting	complex,	cyclosome,	subunit	3
YfiO	PF13525.1	gi|257052086|ref|YP_003129919.1|	-	0.001	18.5	0.6	0.0016	17.9	0.3	1.5	1	1	0	1	1	1	1	Outer	membrane	lipoprotein
TPR_4	PF07721.9	gi|257052086|ref|YP_003129919.1|	-	0.0012	19.0	1.1	0.0012	19.0	0.8	5.5	6	0	0	6	6	5	1	Tetratricopeptide	repeat
Fis1_TPR_C	PF14853.1	gi|257052086|ref|YP_003129919.1|	-	0.0013	18.5	3.3	1.4	8.8	0.0	3.9	4	0	0	4	4	4	1	Fis1	C-terminal	tetratricopeptide	repeat
NARP1	PF12569.3	gi|257052086|ref|YP_003129919.1|	-	0.011	14.5	2.6	3.5	6.2	0.0	2.7	1	1	2	3	3	3	0	NMDA	receptor-regulated	protein	1
FAT	PF02259.18	gi|257052086|ref|YP_003129919.1|	-	0.017	14.1	0.2	0.7	8.8	0.1	2.2	1	1	0	1	1	1	0	FAT	domain
Apc5	PF12862.2	gi|257052086|ref|YP_003129919.1|	-	0.026	14.3	8.8	2	8.2	1.0	4.0	1	1	2	3	3	3	0	Anaphase-promoting	complex	subunit	5
TPR_18	PF13512.1	gi|257052086|ref|YP_003129919.1|	-	0.049	13.6	0.1	0.092	12.7	0.0	1.5	1	1	0	1	1	1	0	Tetratricopeptide	repeat
TPR_21	PF09976.4	gi|257052086|ref|YP_003129919.1|	-	0.13	12.1	9.0	0.093	12.6	3.5	2.4	2	1	0	2	2	2	0	Tetratricopeptide	repeat
Acetyltransf_11	PF13720.1	gi|257052086|ref|YP_003129919.1|	-	0.15	12.3	1.7	0.28	11.4	0.3	2.1	2	0	0	2	2	2	0	Udp	N-acetylglucosamine	O-acyltransferase;	Domain	2
DUF349	PF03993.7	gi|257052086|ref|YP_003129919.1|	-	2.6	8.2	15.7	3.7	7.7	2.4	2.5	2	0	0	2	2	2	0	Domain	of	Unknown	Function	(DUF349)
TPR_5	PF12688.2	gi|257052086|ref|YP_003129919.1|	-	3.7	7.6	7.4	12	5.9	0.7	2.9	1	1	2	3	3	3	0	Tetratrico	peptide	repeat
DUF424	PF04242.8	gi|257052087|ref|YP_003129920.1|	-	3.4e-29	100.7	0.0	3.9e-29	100.5	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF424)
Lipase_GDSL_3	PF14606.1	gi|257052088|ref|YP_003129921.1|	-	1.1e-25	90.4	0.0	1.3e-25	90.1	0.0	1.1	1	0	0	1	1	1	1	GDSL-like	Lipase/Acylhydrolase	family
Lipase_GDSL_2	PF13472.1	gi|257052088|ref|YP_003129921.1|	-	2e-11	44.3	0.6	3.6e-11	43.5	0.4	1.4	1	0	0	1	1	1	1	GDSL-like	Lipase/Acylhydrolase	family
Peptidase_M48	PF01435.13	gi|257052089|ref|YP_003129922.1|	-	4.4e-42	144.1	0.0	7e-42	143.5	0.0	1.3	1	1	0	1	1	1	1	Peptidase	family	M48
Peptidase_M56	PF05569.6	gi|257052089|ref|YP_003129922.1|	-	2.4e-08	33.3	0.4	1.2e-06	27.7	0.0	2.2	2	0	0	2	2	2	1	BlaR1	peptidase	M56
IncA	PF04156.9	gi|257052089|ref|YP_003129922.1|	-	5.4e-06	26.1	2.5	2e-05	24.2	0.2	2.4	3	0	0	3	3	3	1	IncA	protein
Tic20	PF09685.5	gi|257052089|ref|YP_003129922.1|	-	0.075	13.0	5.4	1.5	8.8	0.3	2.2	2	0	0	2	2	2	0	Tic20-like	protein
Peptidase_MA_2	PF13485.1	gi|257052089|ref|YP_003129922.1|	-	0.11	12.4	0.0	0.22	11.5	0.0	1.4	1	0	0	1	1	1	0	Peptidase	MA	superfamily
YjgP_YjgQ	PF03739.9	gi|257052089|ref|YP_003129922.1|	-	4.1	6.0	7.0	1.1	7.9	0.1	2.2	2	0	0	2	2	2	0	Predicted	permease	YjgP/YjgQ	family
DAO	PF01266.19	gi|257052090|ref|YP_003129923.1|	-	7.9e-13	48.0	2.0	1.6e-06	27.2	0.0	2.7	3	0	0	3	3	3	2	FAD	dependent	oxidoreductase
FAD_oxidored	PF12831.2	gi|257052090|ref|YP_003129923.1|	-	3.7e-10	39.4	1.6	5.7e-10	38.8	0.9	1.5	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
Trp_halogenase	PF04820.9	gi|257052090|ref|YP_003129923.1|	-	2.9e-08	32.7	0.1	0.016	13.8	0.0	3.0	3	0	0	3	3	3	2	Tryptophan	halogenase
Lycopene_cycl	PF05834.7	gi|257052090|ref|YP_003129923.1|	-	9e-08	31.4	0.1	3e-07	29.7	0.0	1.9	2	1	0	2	2	2	1	Lycopene	cyclase	protein
FAD_binding_2	PF00890.19	gi|257052090|ref|YP_003129923.1|	-	2.5e-07	29.8	0.1	9.2e-07	28.0	0.0	1.8	1	1	1	2	2	2	1	FAD	binding	domain
Pyr_redox_2	PF07992.9	gi|257052090|ref|YP_003129923.1|	-	4.3e-07	30.0	0.2	1.2e-06	28.5	0.2	1.7	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.12	gi|257052090|ref|YP_003129923.1|	-	4e-06	26.1	0.1	5e-05	22.5	0.0	2.3	3	0	0	3	3	3	1	Thi4	family
HI0933_like	PF03486.9	gi|257052090|ref|YP_003129923.1|	-	5.3e-06	25.1	0.0	0.00032	19.3	0.1	2.1	2	0	0	2	2	2	1	HI0933-like	protein
FAD_binding_3	PF01494.14	gi|257052090|ref|YP_003129923.1|	-	6e-06	25.5	0.5	0.0055	15.8	0.0	2.1	2	0	0	2	2	2	2	FAD	binding	domain
GIDA	PF01134.17	gi|257052090|ref|YP_003129923.1|	-	1e-05	24.6	0.0	0.0013	17.7	0.1	2.1	2	0	0	2	2	2	2	Glucose	inhibited	division	protein	A
NAD_binding_8	PF13450.1	gi|257052090|ref|YP_003129923.1|	-	0.00053	19.9	1.6	0.0011	18.9	0.2	2.1	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_3	PF13738.1	gi|257052090|ref|YP_003129923.1|	-	0.0023	17.9	0.0	0.0061	16.6	0.0	1.7	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
CPSase_L_chain	PF00289.17	gi|257052090|ref|YP_003129923.1|	-	0.023	14.8	0.0	0.051	13.6	0.0	1.5	1	0	0	1	1	1	0	Carbamoyl-phosphate	synthase	L	chain,	N-terminal	domain
Pyr_redox	PF00070.22	gi|257052090|ref|YP_003129923.1|	-	0.047	14.1	0.0	0.1	12.9	0.0	1.6	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.13	gi|257052090|ref|YP_003129923.1|	-	0.082	12.5	0.0	0.16	11.6	0.0	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
HTH_Tnp_4	PF13613.1	gi|257052091|ref|YP_003129924.1|	-	0.00096	18.6	0.0	0.0068	15.9	0.0	2.1	2	0	0	2	2	2	1	Helix-turn-helix	of	DDE	superfamily	endonuclease
HTH_23	PF13384.1	gi|257052091|ref|YP_003129924.1|	-	0.0038	16.8	0.0	0.0074	15.9	0.0	1.5	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_psq	PF05225.11	gi|257052091|ref|YP_003129924.1|	-	0.0078	15.7	0.0	0.018	14.5	0.0	1.7	1	0	0	1	1	1	1	helix-turn-helix,	Psq	domain
Sigma70_r4	PF04545.11	gi|257052091|ref|YP_003129924.1|	-	0.026	13.8	0.0	0.051	12.8	0.0	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
LacI	PF00356.16	gi|257052091|ref|YP_003129924.1|	-	0.055	13.0	0.6	0.14	11.7	0.4	1.7	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	lacI	family
HTH_38	PF13936.1	gi|257052091|ref|YP_003129924.1|	-	0.056	12.9	0.0	0.11	12.0	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_Tnp_ISL3	PF13542.1	gi|257052091|ref|YP_003129924.1|	-	0.063	12.4	0.1	0.14	11.3	0.0	1.6	1	1	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
Fe_dep_repress	PF01325.14	gi|257052091|ref|YP_003129924.1|	-	0.082	12.8	0.1	0.14	12.0	0.1	1.3	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Cro	PF09048.5	gi|257052091|ref|YP_003129924.1|	-	0.089	12.4	0.0	0.25	11.0	0.0	1.7	1	0	0	1	1	1	0	Cro
SpoIIID	PF12116.3	gi|257052091|ref|YP_003129924.1|	-	0.094	12.6	0.0	0.18	11.7	0.0	1.4	1	0	0	1	1	1	0	Stage	III	sporulation	protein	D
DUF3307	PF11750.3	gi|257052092|ref|YP_003129925.1|	-	2.3e-23	82.3	1.7	4.4e-23	81.3	1.2	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3307)
ResB	PF05140.9	gi|257052092|ref|YP_003129925.1|	-	0.054	12.0	0.2	0.062	11.8	0.1	1.2	1	0	0	1	1	1	0	ResB-like	family
DUF2231	PF09990.4	gi|257052092|ref|YP_003129925.1|	-	3.8	7.9	9.2	0.3	11.4	0.4	2.5	2	1	0	2	2	2	0	Predicted	membrane	protein	(DUF2231)
NMD3	PF04981.8	gi|257052093|ref|YP_003129926.1|	-	2.5e-67	226.4	0.0	3e-67	226.2	0.0	1.1	1	0	0	1	1	1	1	NMD3	family
eIF-5a	PF01287.15	gi|257052093|ref|YP_003129926.1|	-	0.0028	17.5	0.0	0.0091	15.9	0.0	1.8	1	0	0	1	1	1	1	Eukaryotic	elongation	factor	5A	hypusine,	DNA-binding	OB	fold
zinc_ribbon_2	PF13240.1	gi|257052093|ref|YP_003129926.1|	-	0.0047	16.3	1.7	3.6	7.1	0.1	3.4	3	0	0	3	3	3	1	zinc-ribbon	domain
FYVE	PF01363.16	gi|257052093|ref|YP_003129926.1|	-	0.0051	16.6	1.5	0.085	12.7	0.5	2.2	2	0	0	2	2	2	1	FYVE	zinc	finger
Rpr2	PF04032.11	gi|257052093|ref|YP_003129926.1|	-	0.0051	16.6	0.1	0.26	11.1	0.0	2.6	3	0	0	3	3	3	1	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
DZR	PF12773.2	gi|257052093|ref|YP_003129926.1|	-	0.014	15.1	5.3	0.72	9.7	2.5	3.1	2	1	1	3	3	3	0	Double	zinc	ribbon
GFA	PF04828.9	gi|257052093|ref|YP_003129926.1|	-	0.015	15.2	1.8	4.2	7.3	0.0	3.2	3	0	0	3	3	3	0	Glutathione-dependent	formaldehyde-activating	enzyme
zf-ribbon_3	PF13248.1	gi|257052093|ref|YP_003129926.1|	-	0.015	14.4	5.7	1.9	7.7	0.1	3.4	3	0	0	3	3	3	0	zinc-ribbon	domain
Lar_restr_allev	PF14354.1	gi|257052093|ref|YP_003129926.1|	-	0.39	11.0	5.8	8.9	6.7	2.5	3.0	2	1	0	2	2	2	0	Restriction	alleviation	protein	Lar
zf-NADH-PPase	PF09297.6	gi|257052093|ref|YP_003129926.1|	-	0.56	9.7	12.1	0.48	9.9	0.2	3.3	3	0	0	3	3	3	0	NADH	pyrophosphatase	zinc	ribbon	domain
zf-TFIIB	PF13453.1	gi|257052093|ref|YP_003129926.1|	-	0.61	9.3	7.3	0.27	10.4	1.3	3.0	2	1	0	2	2	2	0	Transcription	factor	zinc-finger
DUF2703	PF10865.3	gi|257052093|ref|YP_003129926.1|	-	0.74	9.7	2.9	0.63	9.9	0.0	2.3	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF2703)
Nudix_N_2	PF14803.1	gi|257052093|ref|YP_003129926.1|	-	2	8.1	19.9	0.84	9.3	0.3	4.2	5	0	0	5	5	4	0	Nudix	N-terminal
Zn_Tnp_IS1595	PF12760.2	gi|257052093|ref|YP_003129926.1|	-	8.4	6.2	7.4	39	4.1	0.4	3.3	3	0	0	3	3	3	0	Transposase	zinc-ribbon	domain
Met_10	PF02475.11	gi|257052094|ref|YP_003129927.1|	-	3.4e-53	180.2	0.0	4.6e-53	179.7	0.0	1.2	1	0	0	1	1	1	1	Met-10+	like-protein
Methyltransf_18	PF12847.2	gi|257052094|ref|YP_003129927.1|	-	2.9e-12	47.1	0.0	6.5e-12	46.0	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|257052094|ref|YP_003129927.1|	-	4.8e-08	33.0	0.6	2e-07	31.0	0.2	2.1	2	1	0	2	2	2	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|257052094|ref|YP_003129927.1|	-	4.3e-07	29.6	0.0	6.5e-07	29.0	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_15	PF09445.5	gi|257052094|ref|YP_003129927.1|	-	8e-07	28.7	0.0	1.2e-06	28.2	0.0	1.2	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
Methyltransf_23	PF13489.1	gi|257052094|ref|YP_003129927.1|	-	1.2e-05	25.1	0.0	7.2e-05	22.5	0.0	2.0	2	0	0	2	2	2	1	Methyltransferase	domain
MTS	PF05175.9	gi|257052094|ref|YP_003129927.1|	-	0.0001	21.7	0.0	0.00026	20.4	0.0	1.8	1	1	0	1	1	1	1	Methyltransferase	small	domain
Cons_hypoth95	PF03602.10	gi|257052094|ref|YP_003129927.1|	-	0.00036	19.9	0.0	0.00067	19.1	0.0	1.3	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
Methyltransf_24	PF13578.1	gi|257052094|ref|YP_003129927.1|	-	0.002	18.9	0.2	0.008	17.0	0.1	2.1	2	0	0	2	2	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|257052094|ref|YP_003129927.1|	-	0.0095	16.4	0.0	0.024	15.1	0.0	1.7	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_21	PF05050.7	gi|257052094|ref|YP_003129927.1|	-	0.015	15.2	0.0	0.067	13.1	0.0	1.9	1	1	1	2	2	2	0	Methyltransferase	FkbM	domain
TRM	PF02005.11	gi|257052094|ref|YP_003129927.1|	-	0.077	11.9	0.0	0.11	11.4	0.0	1.1	1	0	0	1	1	1	0	N2,N2-dimethylguanosine	tRNA	methyltransferase
tRNA_U5-meth_tr	PF05958.6	gi|257052094|ref|YP_003129927.1|	-	0.12	11.0	0.0	0.17	10.5	0.0	1.1	1	0	0	1	1	1	0	tRNA	(Uracil-5-)-methyltransferase
PrmA	PF06325.8	gi|257052094|ref|YP_003129927.1|	-	0.15	11.1	0.1	0.3	10.1	0.0	1.4	2	0	0	2	2	2	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
DNA_methylase	PF00145.12	gi|257052094|ref|YP_003129927.1|	-	0.16	11.0	0.0	0.24	10.4	0.0	1.1	1	0	0	1	1	1	0	C-5	cytosine-specific	DNA	methylase
PRMT5	PF05185.11	gi|257052094|ref|YP_003129927.1|	-	0.17	10.7	0.0	0.24	10.2	0.0	1.1	1	0	0	1	1	1	0	PRMT5	arginine-N-methyltransferase
PNP_UDP_1	PF01048.15	gi|257052095|ref|YP_003129928.1|	-	3.8e-48	163.4	1.9	4.5e-48	163.2	1.3	1.0	1	0	0	1	1	1	1	Phosphorylase	superfamily
DUF3060	PF11259.3	gi|257052095|ref|YP_003129928.1|	-	0.11	12.0	0.5	0.26	10.9	0.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3060)
Helicase_C_2	PF13307.1	gi|257052096|ref|YP_003129929.1|	-	2.9e-20	72.8	0.0	4.2e-20	72.3	0.0	1.3	1	0	0	1	1	1	1	Helicase	C-terminal	domain
DEAD_2	PF06733.10	gi|257052096|ref|YP_003129929.1|	-	8.3e-06	25.3	0.0	1.2e-05	24.7	0.0	1.2	1	0	0	1	1	1	1	DEAD_2
ResIII	PF04851.10	gi|257052096|ref|YP_003129929.1|	-	1.1e-05	25.3	0.0	0.0036	17.1	0.0	2.2	2	0	0	2	2	2	2	Type	III	restriction	enzyme,	res	subunit
AAA_19	PF13245.1	gi|257052096|ref|YP_003129929.1|	-	2.3e-05	24.0	0.3	5.5e-05	22.8	0.2	1.7	1	0	0	1	1	1	1	Part	of	AAA	domain
DEAD	PF00270.24	gi|257052096|ref|YP_003129929.1|	-	0.00025	20.5	0.0	0.15	11.5	0.0	2.3	2	0	0	2	2	2	2	DEAD/DEAH	box	helicase
AAA_30	PF13604.1	gi|257052096|ref|YP_003129929.1|	-	0.00049	19.7	0.0	0.39	10.2	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
AAA_22	PF13401.1	gi|257052096|ref|YP_003129929.1|	-	0.005	16.9	0.0	0.023	14.8	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|257052096|ref|YP_003129929.1|	-	0.009	16.0	0.0	0.036	14.0	0.0	2.0	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_25	PF13481.1	gi|257052096|ref|YP_003129929.1|	-	0.02	14.3	0.1	0.98	8.7	0.0	3.0	3	0	0	3	3	3	0	AAA	domain
AAA_10	PF12846.2	gi|257052096|ref|YP_003129929.1|	-	0.031	13.7	0.0	7.9	5.8	0.0	2.4	2	0	0	2	2	2	0	AAA-like	domain
DXP_redisom_C	PF08436.7	gi|257052096|ref|YP_003129929.1|	-	0.037	13.9	0.0	0.08	12.8	0.0	1.5	1	0	0	1	1	1	0	1-deoxy-D-xylulose	5-phosphate	reductoisomerase	C-terminal
PhoH	PF02562.11	gi|257052096|ref|YP_003129929.1|	-	0.049	12.8	0.0	0.097	11.8	0.0	1.4	1	0	0	1	1	1	0	PhoH-like	protein
Mg_chelatase	PF01078.16	gi|257052096|ref|YP_003129929.1|	-	0.084	12.0	0.0	0.14	11.3	0.0	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA	PF00004.24	gi|257052096|ref|YP_003129929.1|	-	0.15	12.2	0.0	2.2	8.4	0.0	2.4	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
CxxCxxCC	PF03692.10	gi|257052097|ref|YP_003129930.1|	-	3e-05	24.3	3.7	0.00063	20.1	2.6	2.3	1	1	0	1	1	1	1	Putative	zinc-	or	iron-chelating	domain
YL1	PF05764.8	gi|257052099|ref|YP_003129932.1|	-	9.8	5.7	8.8	11	5.4	6.1	1.0	1	0	0	1	1	1	0	YL1	nuclear	protein
adh_short	PF00106.20	gi|257052100|ref|YP_003129933.1|	-	2.6e-41	141.3	2.6	3.7e-41	140.8	1.8	1.2	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.1	gi|257052100|ref|YP_003129933.1|	-	2.9e-31	109.0	0.1	3.6e-31	108.7	0.1	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.5	gi|257052100|ref|YP_003129933.1|	-	1.4e-22	80.2	0.8	1.9e-22	79.7	0.5	1.1	1	0	0	1	1	1	1	KR	domain
NAD_binding_10	PF13460.1	gi|257052100|ref|YP_003129933.1|	-	0.005	16.8	1.4	0.0076	16.2	0.9	1.3	1	0	0	1	1	1	1	NADH(P)-binding
HHH_5	PF14520.1	gi|257052100|ref|YP_003129933.1|	-	0.0081	16.3	0.0	0.066	13.4	0.0	2.5	2	1	0	2	2	2	1	Helix-hairpin-helix	domain
Epimerase	PF01370.16	gi|257052100|ref|YP_003129933.1|	-	0.012	15.0	0.4	0.022	14.1	0.1	1.6	2	0	0	2	2	2	0	NAD	dependent	epimerase/dehydratase	family
3HCDH_N	PF02737.13	gi|257052100|ref|YP_003129933.1|	-	0.07	12.7	1.0	0.22	11.1	0.2	1.9	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
UPF0066	PF01980.11	gi|257052101|ref|YP_003129934.1|	-	1.1e-34	118.9	0.0	1.4e-34	118.6	0.0	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0066
Usp	PF00582.21	gi|257052102|ref|YP_003129935.1|	-	8.9e-19	68.0	0.6	1e-18	67.8	0.4	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
ABC_tran	PF00005.22	gi|257052103|ref|YP_003129936.1|	-	1.7e-30	106.1	0.0	2.9e-30	105.3	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|257052103|ref|YP_003129936.1|	-	1.2e-09	38.5	0.0	0.00041	20.4	0.0	2.1	1	1	1	2	2	2	2	AAA	domain
DUF258	PF03193.11	gi|257052103|ref|YP_003129936.1|	-	0.00031	19.9	0.0	0.00062	18.9	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_23	PF13476.1	gi|257052103|ref|YP_003129936.1|	-	0.00038	20.8	0.0	0.00061	20.1	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|257052103|ref|YP_003129936.1|	-	0.00042	19.7	0.2	0.00091	18.7	0.1	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_33	PF13671.1	gi|257052103|ref|YP_003129936.1|	-	0.0034	17.2	0.2	0.026	14.4	0.1	2.1	1	1	0	1	1	1	1	AAA	domain
TOBE	PF03459.12	gi|257052103|ref|YP_003129936.1|	-	0.0035	17.4	9.0	0.0086	16.1	0.5	2.8	2	0	0	2	2	2	1	TOBE	domain
SMC_N	PF02463.14	gi|257052103|ref|YP_003129936.1|	-	0.0049	16.1	0.0	0.13	11.4	0.0	2.1	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
TOBE_2	PF08402.5	gi|257052103|ref|YP_003129936.1|	-	0.01	15.8	0.6	0.052	13.5	0.2	2.5	2	0	0	2	2	1	0	TOBE	domain
AAA_19	PF13245.1	gi|257052103|ref|YP_003129936.1|	-	0.013	15.2	0.8	0.046	13.4	0.2	2.2	2	0	0	2	2	2	0	Part	of	AAA	domain
AAA_25	PF13481.1	gi|257052103|ref|YP_003129936.1|	-	0.022	14.1	1.0	0.039	13.3	0.2	2.0	2	1	0	2	2	2	0	AAA	domain
AAA_22	PF13401.1	gi|257052103|ref|YP_003129936.1|	-	0.027	14.6	0.4	0.14	12.2	0.1	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_10	PF12846.2	gi|257052103|ref|YP_003129936.1|	-	0.04	13.3	0.1	0.075	12.4	0.1	1.3	1	0	0	1	1	1	0	AAA-like	domain
AAA_16	PF13191.1	gi|257052103|ref|YP_003129936.1|	-	0.047	13.6	1.7	0.17	11.8	1.2	1.9	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_17	PF13207.1	gi|257052103|ref|YP_003129936.1|	-	0.068	13.9	0.1	0.39	11.5	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_15	PF13175.1	gi|257052103|ref|YP_003129936.1|	-	0.084	11.9	0.0	3.4	6.6	0.0	2.0	2	0	0	2	2	2	0	AAA	ATPase	domain
Adeno_IVa2	PF02456.10	gi|257052103|ref|YP_003129936.1|	-	0.1	11.2	0.0	0.14	10.7	0.0	1.1	1	0	0	1	1	1	0	Adenovirus	IVa2	protein
Dynamin_N	PF00350.18	gi|257052103|ref|YP_003129936.1|	-	0.1	12.4	0.1	0.16	11.7	0.1	1.2	1	0	0	1	1	1	0	Dynamin	family
ABC_ATPase	PF09818.4	gi|257052103|ref|YP_003129936.1|	-	0.16	10.5	0.1	0.26	9.8	0.1	1.2	1	0	0	1	1	1	0	Predicted	ATPase	of	the	ABC	class
BPD_transp_1	PF00528.17	gi|257052104|ref|YP_003129937.1|	-	2.5e-19	69.4	12.3	2.5e-19	69.4	8.5	1.9	1	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
Peptidase_U4	PF03419.8	gi|257052104|ref|YP_003129937.1|	-	0.26	10.2	1.8	0.62	9.0	1.2	1.6	1	1	1	2	2	2	0	Sporulation	factor	SpoIIGA
SBP_bac_11	PF13531.1	gi|257052105|ref|YP_003129938.1|	-	1.3e-34	119.8	1.3	1.7e-34	119.4	0.9	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.20	gi|257052105|ref|YP_003129938.1|	-	1.4e-09	38.1	0.0	1.1e-08	35.1	0.0	1.9	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.4	gi|257052105|ref|YP_003129938.1|	-	3.5	7.8	12.3	0.15	12.1	4.0	2.3	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
TOBE	PF03459.12	gi|257052106|ref|YP_003129939.1|	-	1.8e-14	53.5	3.9	6.8e-14	51.7	2.7	2.0	1	0	0	1	1	1	1	TOBE	domain
HTH_1	PF00126.22	gi|257052106|ref|YP_003129939.1|	-	1.5e-08	34.2	1.7	1.8e-08	34.0	0.1	1.9	2	0	0	2	2	2	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
TOBE_2	PF08402.5	gi|257052106|ref|YP_003129939.1|	-	0.0077	16.2	1.3	0.0077	16.2	0.9	2.1	2	0	0	2	2	2	1	TOBE	domain
MarR_2	PF12802.2	gi|257052106|ref|YP_003129939.1|	-	0.018	14.7	0.2	0.046	13.3	0.2	1.7	1	0	0	1	1	1	0	MarR	family
HTH_28	PF13518.1	gi|257052106|ref|YP_003129939.1|	-	0.086	12.8	0.2	0.17	11.9	0.1	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
MutS_V	PF00488.16	gi|257052107|ref|YP_003129940.1|	-	3.8e-11	42.8	0.0	5.8e-11	42.2	0.0	1.2	1	0	0	1	1	1	1	MutS	domain	V
HHH_5	PF14520.1	gi|257052107|ref|YP_003129940.1|	-	5.6e-05	23.2	1.9	5.6e-05	23.2	1.3	3.1	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
HHH	PF00633.18	gi|257052107|ref|YP_003129940.1|	-	0.00021	20.7	1.1	0.002	17.7	0.1	2.9	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
SRP54	PF00448.17	gi|257052107|ref|YP_003129940.1|	-	0.084	12.3	0.0	0.15	11.5	0.0	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
IMS_HHH	PF11798.3	gi|257052107|ref|YP_003129940.1|	-	0.11	12.5	0.0	0.35	11.0	0.0	2.0	1	0	0	1	1	1	0	IMS	family	HHH	motif
DUF2892	PF11127.3	gi|257052108|ref|YP_003129941.1|	-	2.4e-17	62.5	4.9	5.2e-17	61.4	3.4	1.5	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF2892)
YtpI	PF14007.1	gi|257052108|ref|YP_003129941.1|	-	0.0024	17.7	0.9	0.0029	17.4	0.6	1.1	1	0	0	1	1	1	1	YtpI-like	protein
DUF2955	PF11168.3	gi|257052108|ref|YP_003129941.1|	-	0.026	14.1	2.2	0.031	13.9	1.5	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2955)
SKG6	PF08693.5	gi|257052108|ref|YP_003129941.1|	-	0.029	13.6	1.9	0.029	13.6	1.3	2.2	2	0	0	2	2	2	0	Transmembrane	alpha-helix	domain
DUF2157	PF09925.4	gi|257052108|ref|YP_003129941.1|	-	0.15	11.6	1.5	0.18	11.4	1.0	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2157)
Phage_holin_5	PF06946.6	gi|257052108|ref|YP_003129941.1|	-	0.54	10.4	2.7	0.68	10.1	1.8	1.1	1	0	0	1	1	1	0	Phage	holin
IncA	PF04156.9	gi|257052108|ref|YP_003129941.1|	-	0.59	9.7	9.2	0.65	9.5	6.4	1.0	1	0	0	1	1	1	0	IncA	protein
Bacteriocin_IIc	PF10439.4	gi|257052108|ref|YP_003129941.1|	-	3.2	7.9	6.7	4.5	7.4	4.6	1.3	1	0	0	1	1	1	0	Bacteriocin	class	II	with	double-glycine	leader	peptide
DUF202	PF02656.10	gi|257052108|ref|YP_003129941.1|	-	6.6	7.0	6.5	11	6.3	4.5	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF202)
PAS_4	PF08448.5	gi|257052109|ref|YP_003129942.1|	-	2.7e-40	136.8	12.9	9.3e-15	54.6	0.4	4.0	4	0	0	4	4	4	3	PAS	fold
PAS_9	PF13426.1	gi|257052109|ref|YP_003129942.1|	-	7.5e-38	129.0	1.0	8.6e-15	54.9	0.0	3.7	4	0	0	4	4	4	3	PAS	domain
PAS	PF00989.19	gi|257052109|ref|YP_003129942.1|	-	5e-23	81.0	0.4	9.5e-11	41.4	0.0	3.4	3	0	0	3	3	3	3	PAS	fold
HATPase_c	PF02518.21	gi|257052109|ref|YP_003129942.1|	-	3.7e-20	71.6	0.0	8.6e-20	70.5	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_8	PF13188.1	gi|257052109|ref|YP_003129942.1|	-	7.3e-15	54.2	0.2	6.6e-06	25.7	0.0	3.7	3	0	0	3	3	3	3	PAS	domain
PAS_3	PF08447.6	gi|257052109|ref|YP_003129942.1|	-	2.5e-10	40.3	0.0	2.5e-06	27.5	0.0	3.4	3	1	1	4	4	4	2	PAS	fold
HisKA	PF00512.20	gi|257052109|ref|YP_003129942.1|	-	2.8e-09	36.8	6.9	4.8e-09	36.0	0.2	3.7	4	0	0	4	4	4	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_3	PF13589.1	gi|257052109|ref|YP_003129942.1|	-	0.00091	18.8	0.0	0.0026	17.4	0.0	1.8	1	1	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_5	PF14501.1	gi|257052109|ref|YP_003129942.1|	-	0.098	12.3	0.0	0.72	9.5	0.0	2.2	1	1	0	1	1	1	0	GHKL	domain
Bac_luciferase	PF00296.15	gi|257052110|ref|YP_003129943.1|	-	1.4e-33	116.3	8.3	1.6e-33	116.1	5.7	1.1	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
DUF746	PF05344.6	gi|257052110|ref|YP_003129943.1|	-	0.09	12.3	0.1	0.28	10.7	0.1	1.8	1	0	0	1	1	1	0	Domain	of	Unknown	Function	(DUF746)
Asn_synthase	PF00733.16	gi|257052111|ref|YP_003129944.1|	-	2.3e-10	40.4	0.4	4.6e-10	39.4	0.3	1.5	1	0	0	1	1	1	1	Asparagine	synthase
tRNA_Me_trans	PF03054.11	gi|257052111|ref|YP_003129944.1|	-	3.3e-10	39.0	0.0	1.9e-06	26.6	0.0	2.3	2	0	0	2	2	2	2	tRNA	methyl	transferase
NAD_synthase	PF02540.12	gi|257052111|ref|YP_003129944.1|	-	1.1e-09	37.5	0.0	2.4e-09	36.4	0.0	1.5	2	0	0	2	2	2	1	NAD	synthase
QueC	PF06508.8	gi|257052111|ref|YP_003129944.1|	-	6.9e-06	25.4	0.1	3.5e-05	23.1	0.0	2.0	2	1	0	2	2	2	1	Queuosine	biosynthesis	protein	QueC
ATP_bind_3	PF01171.15	gi|257052111|ref|YP_003129944.1|	-	0.0003	20.3	0.2	0.0016	17.9	0.1	2.1	1	1	1	2	2	2	1	PP-loop	family
Arginosuc_synth	PF00764.14	gi|257052111|ref|YP_003129944.1|	-	0.0015	17.6	0.0	0.0023	17.0	0.0	1.2	1	0	0	1	1	1	1	Arginosuccinate	synthase
DUF208	PF02677.9	gi|257052111|ref|YP_003129944.1|	-	0.013	15.3	0.3	0.03	14.0	0.1	1.7	2	0	0	2	2	2	0	Uncharacterized	BCR,	COG1636
DUF1205	PF06722.7	gi|257052111|ref|YP_003129944.1|	-	0.038	14.2	0.1	1.8	8.8	0.0	2.8	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1205)
DUF913	PF06025.7	gi|257052112|ref|YP_003129945.1|	-	1.1	7.9	4.4	1.8	7.2	3.0	1.2	1	0	0	1	1	1	0	Domain	of	Unknown	Function	(DUF913)
SOG2	PF10428.4	gi|257052112|ref|YP_003129945.1|	-	1.8	7.0	9.3	2.6	6.6	6.5	1.1	1	0	0	1	1	1	0	RAM	signalling	pathway	protein
MarR_2	PF12802.2	gi|257052114|ref|YP_003129947.1|	-	2.3e-05	23.9	0.0	3.4e-05	23.4	0.0	1.4	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.17	gi|257052114|ref|YP_003129947.1|	-	0.00092	18.8	0.0	0.0016	18.0	0.0	1.4	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.14	gi|257052114|ref|YP_003129947.1|	-	0.003	17.2	0.0	0.0065	16.1	0.0	1.6	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
Fe_dep_repress	PF01325.14	gi|257052114|ref|YP_003129947.1|	-	0.0049	16.7	0.0	0.0075	16.1	0.0	1.3	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_23	PF13384.1	gi|257052114|ref|YP_003129947.1|	-	0.0066	16.0	0.0	0.017	14.7	0.0	1.7	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_24	PF13412.1	gi|257052114|ref|YP_003129947.1|	-	0.021	14.1	0.0	0.07	12.5	0.0	1.9	2	1	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.2	gi|257052114|ref|YP_003129947.1|	-	0.043	13.6	0.0	0.079	12.7	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_27	PF13463.1	gi|257052114|ref|YP_003129947.1|	-	0.048	13.9	0.2	0.15	12.4	0.0	1.9	3	0	0	3	3	3	0	Winged	helix	DNA-binding	domain
HTH_5	PF01022.15	gi|257052114|ref|YP_003129947.1|	-	0.093	12.4	0.0	0.16	11.6	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
TatC	PF00902.13	gi|257052115|ref|YP_003129948.1|	-	1.4e-33	116.1	18.6	1.4e-33	116.1	12.9	2.0	2	0	0	2	2	2	1	Sec-independent	protein	translocase	protein	(TatC)
SUR7	PF06687.7	gi|257052115|ref|YP_003129948.1|	-	0.084	12.4	4.2	5.8	6.4	3.9	2.4	1	1	1	2	2	2	0	SUR7/PalI	family
zf-DHHC	PF01529.15	gi|257052115|ref|YP_003129948.1|	-	1.1	8.5	4.2	2.1	7.7	2.9	1.5	1	0	0	1	1	1	0	DHHC	palmitoyltransferase
TatC	PF00902.13	gi|257052116|ref|YP_003129949.1|	-	1.4e-67	227.2	25.3	4.3e-36	124.3	8.0	2.3	2	0	0	2	2	2	2	Sec-independent	protein	translocase	protein	(TatC)
Phospholamban	PF04272.9	gi|257052116|ref|YP_003129949.1|	-	0.067	12.6	0.1	1.8	8.0	0.0	2.4	2	0	0	2	2	2	0	Phospholamban
PHO4	PF01384.15	gi|257052117|ref|YP_003129950.1|	-	6.1e-56	189.4	26.0	9.5e-56	188.7	18.0	1.2	1	0	0	1	1	1	1	Phosphate	transporter	family
SpoVS	PF04232.7	gi|257052117|ref|YP_003129950.1|	-	0.021	14.3	6.8	0.024	14.1	0.9	2.9	3	0	0	3	3	3	0	Stage	V	sporulation	protein	S	(SpoVS)
DUF677	PF05055.7	gi|257052117|ref|YP_003129950.1|	-	1.2	7.7	3.1	3.1	6.3	2.1	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF677)
Flavodoxin_5	PF12724.2	gi|257052118|ref|YP_003129951.1|	-	1.5e-39	135.2	0.0	1.9e-39	134.9	0.0	1.1	1	0	0	1	1	1	1	Flavodoxin	domain
Flavodoxin_1	PF00258.20	gi|257052118|ref|YP_003129951.1|	-	5.7e-06	26.3	0.0	1.6e-05	24.9	0.0	1.9	1	1	1	2	2	2	1	Flavodoxin
Flavodoxin_3	PF12641.2	gi|257052118|ref|YP_003129951.1|	-	0.00038	19.9	0.0	0.00079	18.8	0.0	1.6	1	1	0	1	1	1	1	Flavodoxin	domain
RHH_1	PF01402.16	gi|257052119|ref|YP_003129952.1|	-	2.9e-06	26.9	0.8	4.1e-05	23.2	0.1	2.1	1	1	1	2	2	2	2	Ribbon-helix-helix	protein,	copG	family
DUF165	PF02592.10	gi|257052120|ref|YP_003129953.1|	-	3.8e-41	140.6	4.8	3.8e-41	140.6	3.3	1.5	2	0	0	2	2	2	1	Uncharacterized	ACR,	YhhQ	family	COG1738
IMP_cyclohyd	PF07826.6	gi|257052121|ref|YP_003129954.1|	-	3.1e-52	176.8	0.1	3.7e-52	176.5	0.1	1.1	1	0	0	1	1	1	1	IMP	cyclohydrolase-like	protein
Pollen_allerg_2	PF01620.11	gi|257052122|ref|YP_003129955.1|	-	0.03	14.6	0.1	0.075	13.3	0.0	1.7	2	0	0	2	2	2	0	Ribonuclease	(pollen	allergen)
HTH_10	PF04967.7	gi|257052124|ref|YP_003129957.1|	-	2.6e-14	52.5	0.0	4.5e-14	51.7	0.0	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Sigma70_r4_2	PF08281.7	gi|257052124|ref|YP_003129957.1|	-	0.011	15.2	0.0	0.022	14.2	0.0	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_20	PF12840.2	gi|257052124|ref|YP_003129957.1|	-	0.012	15.4	0.0	0.023	14.4	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
Sigma70_r4	PF04545.11	gi|257052124|ref|YP_003129957.1|	-	0.018	14.3	0.0	0.035	13.4	0.0	1.4	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_AsnC-type	PF13404.1	gi|257052124|ref|YP_003129957.1|	-	0.035	13.6	0.1	0.082	12.4	0.1	1.6	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
Phage_CI_repr	PF07022.8	gi|257052124|ref|YP_003129957.1|	-	0.038	14.0	0.0	0.081	13.0	0.0	1.5	1	0	0	1	1	1	0	Bacteriophage	CI	repressor	helix-turn-helix	domain
HTH_24	PF13412.1	gi|257052124|ref|YP_003129957.1|	-	0.038	13.3	0.0	0.062	12.6	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
TusA	PF01206.12	gi|257052124|ref|YP_003129957.1|	-	0.073	12.6	0.0	0.16	11.6	0.0	1.6	1	0	0	1	1	1	0	Sulfurtransferase	TusA
HTH_psq	PF05225.11	gi|257052124|ref|YP_003129957.1|	-	0.086	12.4	0.0	0.22	11.0	0.0	1.7	1	1	1	2	2	2	0	helix-turn-helix,	Psq	domain
dCMP_cyt_deam_1	PF00383.17	gi|257052125|ref|YP_003129958.1|	-	6.1e-17	61.1	0.3	3e-16	58.9	0.1	1.9	2	0	0	2	2	2	1	Cytidine	and	deoxycytidylate	deaminase	zinc-binding	region
XOO_2897-deam	PF14440.1	gi|257052125|ref|YP_003129958.1|	-	0.064	12.9	2.4	0.93	9.2	0.6	2.6	1	1	2	3	3	3	0	Xanthomonas	XOO_2897-like	deaminase
Bd3614-deam	PF14439.1	gi|257052125|ref|YP_003129958.1|	-	0.076	12.8	3.0	0.22	11.3	2.0	1.8	1	1	1	2	2	2	0	Bd3614-like	deaminase
DUF2452	PF10504.4	gi|257052125|ref|YP_003129958.1|	-	0.16	11.2	0.0	0.21	10.8	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2452)
HNH	PF01844.18	gi|257052126|ref|YP_003129959.1|	-	0.0082	15.9	23.6	0.72	9.7	4.3	3.8	2	2	0	2	2	2	2	HNH	endonuclease
DUF4120	PF13496.1	gi|257052126|ref|YP_003129959.1|	-	0.013	15.5	0.1	0.16	11.9	0.0	2.4	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4120)
Phage_tail_S	PF05069.8	gi|257052126|ref|YP_003129959.1|	-	0.087	12.5	0.1	0.17	11.6	0.0	1.4	1	0	0	1	1	1	0	Phage	virion	morphogenesis	family
NinF	PF05810.7	gi|257052126|ref|YP_003129959.1|	-	0.088	12.6	4.3	3.3	7.5	0.1	2.7	2	0	0	2	2	2	0	NinF	protein
RDD	PF06271.7	gi|257052127|ref|YP_003129960.1|	-	2.4e-17	63.1	3.3	2.8e-17	62.8	2.3	1.1	1	0	0	1	1	1	1	RDD	family
ADH_N	PF08240.7	gi|257052128|ref|YP_003129961.1|	-	0.071	12.8	0.1	0.08	12.7	0.1	1.1	1	0	0	1	1	1	0	Alcohol	dehydrogenase	GroES-like	domain
MFS_1	PF07690.11	gi|257052129|ref|YP_003129962.1|	-	3.6e-29	101.6	68.9	1.8e-20	72.9	21.9	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Glyco_hydro_3	PF00933.16	gi|257052130|ref|YP_003129963.1|	-	4.3e-80	268.9	0.0	5.5e-80	268.5	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	N	terminal	domain
Glyco_hydro_3_C	PF01915.17	gi|257052130|ref|YP_003129963.1|	-	2.7e-47	161.1	0.0	4.6e-47	160.4	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	C-terminal	domain
Fn3-like	PF14310.1	gi|257052130|ref|YP_003129963.1|	-	2.4e-22	78.6	0.1	5.3e-22	77.5	0.0	1.6	1	0	0	1	1	1	1	Fibronectin	type	III-like	domain
NTP_transferase	PF00483.18	gi|257052131|ref|YP_003129964.1|	-	2.5e-34	118.6	0.0	3.1e-34	118.4	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.2	gi|257052131|ref|YP_003129964.1|	-	5.4e-10	39.5	0.0	6.7e-10	39.2	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.14	gi|257052131|ref|YP_003129964.1|	-	0.014	14.8	0.0	0.024	14.1	0.0	1.4	1	0	0	1	1	1	0	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Spore_YhcN_YlaJ	PF09580.5	gi|257052131|ref|YP_003129964.1|	-	0.043	13.9	0.1	0.068	13.2	0.1	1.2	1	0	0	1	1	1	0	Sporulation	lipoprotein	YhcN/YlaJ	(Spore_YhcN_YlaJ)
Glyco_hydro_77	PF02446.12	gi|257052132|ref|YP_003129965.1|	-	1.8e-130	435.8	0.0	2.1e-130	435.6	0.0	1.0	1	0	0	1	1	1	1	4-alpha-glucanotransferase
Glycos_transf_1	PF00534.15	gi|257052133|ref|YP_003129966.1|	-	1.3e-26	93.0	0.0	2.2e-26	92.2	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|257052133|ref|YP_003129966.1|	-	2.3e-14	53.6	0.0	5e-14	52.6	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.1	gi|257052133|ref|YP_003129966.1|	-	2.5e-13	50.4	0.1	4.2e-13	49.7	0.1	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_transf_4	PF13439.1	gi|257052133|ref|YP_003129966.1|	-	1.6e-05	24.7	0.0	2.6e-05	24.0	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_transf_5	PF08323.6	gi|257052133|ref|YP_003129966.1|	-	0.0016	18.0	0.1	0.018	14.5	0.0	2.3	1	1	1	2	2	2	1	Starch	synthase	catalytic	domain
FGE-sulfatase	PF03781.11	gi|257052133|ref|YP_003129966.1|	-	0.11	11.8	0.0	0.15	11.3	0.0	1.2	1	0	0	1	1	1	0	Sulfatase-modifying	factor	enzyme	1
Alpha-amylase	PF00128.19	gi|257052135|ref|YP_003129968.1|	-	5e-48	164.1	0.0	4.3e-46	157.7	0.0	2.5	1	1	0	1	1	1	1	Alpha	amylase,	catalytic	domain
Alpha-amylase_C	PF02806.13	gi|257052135|ref|YP_003129968.1|	-	4.8e-05	23.4	0.0	0.0011	19.0	0.0	2.5	2	0	0	2	2	2	1	Alpha	amylase,	C-terminal	all-beta	domain
DUF3459	PF11941.3	gi|257052135|ref|YP_003129968.1|	-	0.00019	21.4	0.4	0.0016	18.5	0.2	2.6	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF3459)
Glucodextran_N	PF09137.6	gi|257052136|ref|YP_003129969.1|	-	9.2e-34	116.8	0.0	1.6e-32	112.8	0.0	2.2	1	1	0	1	1	1	1	Glucodextranase,	domain	N
Glyco_hydro_15	PF00723.16	gi|257052136|ref|YP_003129969.1|	-	1.1e-32	113.2	3.1	1.4e-21	76.6	0.0	4.6	3	2	0	4	4	4	4	Glycosyl	hydrolases	family	15
Prenyltrans_1	PF13243.1	gi|257052136|ref|YP_003129969.1|	-	0.0013	18.6	2.1	0.01	15.8	0.1	3.1	2	1	1	3	3	3	1	Prenyltransferase-like
Fst_toxin	PF13955.1	gi|257052137|ref|YP_003129970.1|	-	0.11	12.2	1.3	0.2	11.3	0.9	1.5	1	0	0	1	1	1	0	Toxin	Fst,	type	I	toxin-antitoxin	system
AAA_16	PF13191.1	gi|257052138|ref|YP_003129971.1|	-	3.3e-12	46.7	0.2	1.6e-11	44.5	0.0	2.1	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|257052138|ref|YP_003129971.1|	-	6.3e-08	32.8	0.0	1.3e-07	31.7	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
Cdc6_C	PF09079.6	gi|257052138|ref|YP_003129971.1|	-	2e-07	30.6	0.1	5.5e-07	29.2	0.1	1.7	1	0	0	1	1	1	1	CDC6,	C	terminal
AAA	PF00004.24	gi|257052138|ref|YP_003129971.1|	-	0.00013	22.2	0.0	0.00036	20.7	0.0	1.8	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_33	PF13671.1	gi|257052138|ref|YP_003129971.1|	-	0.00032	20.6	0.0	0.00074	19.4	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
Arch_ATPase	PF01637.13	gi|257052138|ref|YP_003129971.1|	-	0.0016	18.2	0.0	0.0029	17.3	0.0	1.5	1	0	0	1	1	1	1	Archaeal	ATPase
AAA_19	PF13245.1	gi|257052138|ref|YP_003129971.1|	-	0.0016	18.1	0.0	0.0045	16.7	0.0	1.8	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_14	PF13173.1	gi|257052138|ref|YP_003129971.1|	-	0.0069	16.2	0.0	0.028	14.3	0.0	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_11	PF13086.1	gi|257052138|ref|YP_003129971.1|	-	0.012	15.1	0.0	0.014	14.9	0.0	1.4	1	1	0	1	1	1	0	AAA	domain
AAA_17	PF13207.1	gi|257052138|ref|YP_003129971.1|	-	0.016	16.0	1.4	0.069	13.9	0.9	2.4	1	1	0	1	1	1	0	AAA	domain
AAA_18	PF13238.1	gi|257052138|ref|YP_003129971.1|	-	0.022	15.0	0.0	0.069	13.4	0.0	2.0	1	1	0	1	1	1	0	AAA	domain
NTPase_1	PF03266.10	gi|257052138|ref|YP_003129971.1|	-	0.022	14.4	0.0	0.053	13.2	0.0	1.6	1	0	0	1	1	1	0	NTPase
T2SE	PF00437.15	gi|257052138|ref|YP_003129971.1|	-	0.025	13.4	0.0	0.043	12.7	0.0	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
IstB_IS21	PF01695.12	gi|257052138|ref|YP_003129971.1|	-	0.029	13.7	0.1	7.6	5.9	0.0	2.4	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
HTH_36	PF13730.1	gi|257052138|ref|YP_003129971.1|	-	0.031	14.4	0.0	0.064	13.4	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|257052138|ref|YP_003129971.1|	-	0.032	13.9	0.0	0.15	11.7	0.0	2.2	1	1	0	1	1	1	0	MarR	family
NACHT	PF05729.7	gi|257052138|ref|YP_003129971.1|	-	0.034	13.7	0.0	0.06	13.0	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
Sigma54_activat	PF00158.21	gi|257052138|ref|YP_003129971.1|	-	0.047	13.1	0.0	0.083	12.3	0.0	1.4	1	0	0	1	1	1	0	Sigma-54	interaction	domain
AAA_30	PF13604.1	gi|257052138|ref|YP_003129971.1|	-	0.06	12.9	0.9	0.23	11.0	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
Rad17	PF03215.10	gi|257052138|ref|YP_003129971.1|	-	0.077	11.6	0.0	0.11	11.1	0.0	1.3	1	0	0	1	1	1	0	Rad17	cell	cycle	checkpoint	protein
AAA_32	PF13654.1	gi|257052138|ref|YP_003129971.1|	-	0.079	11.5	0.2	8.8	4.8	0.1	2.3	2	0	0	2	2	2	0	AAA	domain
Swi5	PF07061.6	gi|257052138|ref|YP_003129971.1|	-	0.083	12.6	0.0	0.18	11.5	0.0	1.5	1	0	0	1	1	1	0	Swi5
AAA_28	PF13521.1	gi|257052138|ref|YP_003129971.1|	-	0.09	12.7	0.0	0.17	11.8	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
Mg_chelatase	PF01078.16	gi|257052138|ref|YP_003129971.1|	-	0.091	11.9	0.0	0.15	11.1	0.0	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
ATP_bind_1	PF03029.12	gi|257052138|ref|YP_003129971.1|	-	0.094	12.2	0.0	2.6	7.5	0.0	2.2	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
DUF2250	PF10007.4	gi|257052138|ref|YP_003129971.1|	-	0.12	12.2	0.3	0.39	10.6	0.0	1.9	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
RNA_helicase	PF00910.17	gi|257052138|ref|YP_003129971.1|	-	0.16	12.1	0.0	0.38	10.9	0.0	1.7	1	0	0	1	1	1	0	RNA	helicase
DUF4359	PF14271.1	gi|257052139|ref|YP_003129972.1|	-	0.00013	22.3	0.0	9.8	6.6	0.0	4.7	5	0	0	5	5	5	1	Domain	of	unknown	function	(DUF4359)
SpoVR	PF04293.8	gi|257052139|ref|YP_003129972.1|	-	0.00057	18.3	6.5	1	7.6	0.2	4.2	1	1	4	5	5	5	3	SpoVR	like	protein
MeMO_Hyd_G	PF02964.11	gi|257052139|ref|YP_003129972.1|	-	0.0011	18.9	0.8	2.2	8.1	0.0	3.6	2	2	1	3	3	3	2	Methane	monooxygenase,	hydrolase	gamma	chain
SDF	PF00375.13	gi|257052139|ref|YP_003129972.1|	-	0.0016	17.2	4.2	0.0016	17.2	2.9	1.6	2	0	0	2	2	2	1	Sodium:dicarboxylate	symporter	family
Helicase_IV_N	PF12462.3	gi|257052139|ref|YP_003129972.1|	-	0.1	12.2	0.1	4	7.0	0.0	2.7	3	0	0	3	3	3	0	DNA	helicase	IV	/	RNA	helicase	N	terminal
DUF1282	PF06930.7	gi|257052139|ref|YP_003129972.1|	-	4.2	6.9	7.5	0.5	10.0	2.2	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1282)
TrmB	PF01978.14	gi|257052140|ref|YP_003129973.1|	-	1.9e-09	37.1	0.0	1.6e-06	27.7	0.0	2.2	2	0	0	2	2	2	2	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.2	gi|257052140|ref|YP_003129973.1|	-	3.5e-07	29.9	0.0	8.5e-05	22.2	0.0	2.4	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|257052140|ref|YP_003129973.1|	-	1.6e-06	27.5	0.0	0.038	13.5	0.0	2.4	2	0	0	2	2	2	2	IclR	helix-turn-helix	domain
MarR	PF01047.17	gi|257052140|ref|YP_003129973.1|	-	7.2e-06	25.6	0.0	0.0035	16.9	0.0	2.2	2	0	0	2	2	2	1	MarR	family
HTH_24	PF13412.1	gi|257052140|ref|YP_003129973.1|	-	1.6e-05	24.1	0.0	0.032	13.5	0.0	2.3	2	0	0	2	2	2	2	Winged	helix-turn-helix	DNA-binding
Rrf2	PF02082.15	gi|257052140|ref|YP_003129973.1|	-	0.00022	21.2	0.0	0.032	14.3	0.0	2.3	2	0	0	2	2	2	1	Transcriptional	regulator
HTH_5	PF01022.15	gi|257052140|ref|YP_003129973.1|	-	0.00023	20.7	0.0	0.039	13.6	0.0	2.3	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_27	PF13463.1	gi|257052140|ref|YP_003129973.1|	-	0.00033	20.9	0.1	0.037	14.3	0.0	2.5	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_7	PF02796.10	gi|257052140|ref|YP_003129973.1|	-	0.00045	20.0	0.0	1.2	9.0	0.0	2.5	2	0	0	2	2	2	2	Helix-turn-helix	domain	of	resolvase
HTH_29	PF13551.1	gi|257052140|ref|YP_003129973.1|	-	0.00076	19.6	0.0	0.7	10.0	0.0	2.3	2	0	0	2	2	2	2	Winged	helix-turn	helix
HTH_36	PF13730.1	gi|257052140|ref|YP_003129973.1|	-	0.00081	19.4	0.0	0.0015	18.5	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|257052140|ref|YP_003129973.1|	-	0.0013	18.3	0.0	0.14	11.8	0.0	2.3	2	0	0	2	2	2	1	MarR	family
HTH_11	PF08279.7	gi|257052140|ref|YP_003129973.1|	-	0.0016	18.0	0.0	0.011	15.3	0.0	2.1	2	0	0	2	2	2	1	HTH	domain
FUR	PF01475.14	gi|257052140|ref|YP_003129973.1|	-	0.0023	17.8	0.0	0.0068	16.3	0.0	1.7	2	0	0	2	2	2	1	Ferric	uptake	regulator	family
PadR	PF03551.9	gi|257052140|ref|YP_003129973.1|	-	0.0088	15.7	0.1	0.029	14.1	0.0	1.8	2	0	0	2	2	2	1	Transcriptional	regulator	PadR-like	family
HTH_28	PF13518.1	gi|257052140|ref|YP_003129973.1|	-	0.012	15.5	0.0	6.6	6.8	0.0	2.5	2	1	0	2	2	2	0	Helix-turn-helix	domain
HTH_DeoR	PF08220.7	gi|257052140|ref|YP_003129973.1|	-	0.013	15.0	0.0	0.09	12.3	0.0	2.2	2	0	0	2	2	2	0	DeoR-like	helix-turn-helix	domain
TetR_N	PF00440.18	gi|257052140|ref|YP_003129973.1|	-	0.014	15.0	0.0	4.8	6.9	0.0	2.9	3	0	0	3	3	3	0	Bacterial	regulatory	proteins,	tetR	family
HTH_17	PF12728.2	gi|257052140|ref|YP_003129973.1|	-	0.02	15.1	0.1	2.9	8.2	0.0	2.5	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_23	PF13384.1	gi|257052140|ref|YP_003129973.1|	-	0.041	13.5	0.0	5.5	6.7	0.0	2.4	2	0	0	2	2	2	0	Homeodomain-like	domain
HTH_10	PF04967.7	gi|257052140|ref|YP_003129973.1|	-	0.059	12.9	0.1	1	9.0	0.0	2.5	2	0	0	2	2	2	0	HTH	DNA	binding	domain
MerR	PF00376.18	gi|257052140|ref|YP_003129973.1|	-	0.059	12.9	1.1	2.9	7.5	0.3	3.0	2	1	0	2	2	2	0	MerR	family	regulatory	protein
FeoC	PF09012.5	gi|257052140|ref|YP_003129973.1|	-	0.16	11.6	0.0	0.27	10.9	0.0	1.3	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
PIN_4	PF13638.1	gi|257052141|ref|YP_003129974.1|	-	0.11	12.6	0.0	0.32	11.0	0.0	1.7	1	1	0	1	1	1	0	PIN	domain
Polysacc_synt_3	PF13440.1	gi|257052142|ref|YP_003129975.1|	-	0.0016	17.9	1.1	0.002	17.6	0.8	1.0	1	0	0	1	1	1	1	Polysaccharide	biosynthesis	protein
HAMP	PF00672.20	gi|257052142|ref|YP_003129975.1|	-	0.014	15.6	1.1	0.019	15.1	0.1	1.7	2	0	0	2	2	2	0	HAMP	domain
IncA	PF04156.9	gi|257052142|ref|YP_003129975.1|	-	0.031	13.8	0.0	0.036	13.6	0.0	1.0	1	0	0	1	1	1	0	IncA	protein
EI24	PF07264.6	gi|257052142|ref|YP_003129975.1|	-	0.11	11.9	2.0	0.23	10.8	1.5	1.6	1	1	0	1	1	1	0	Etoposide-induced	protein	2.4	(EI24)
DUF1469	PF07332.6	gi|257052142|ref|YP_003129975.1|	-	0.14	11.9	0.7	0.18	11.5	0.5	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1469)
Tad	PF13400.1	gi|257052142|ref|YP_003129975.1|	-	7.5	6.6	6.9	12	6.0	0.8	2.2	1	1	1	2	2	2	0	Putative	Flp	pilus-assembly	TadE/G-like
DUF1616	PF07760.6	gi|257052143|ref|YP_003129976.1|	-	2.7e-93	312.2	0.6	6.6e-93	310.9	0.4	1.5	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1616)
7TMR-DISM_7TM	PF07695.6	gi|257052143|ref|YP_003129976.1|	-	0.66	9.6	6.8	0.77	9.3	0.3	2.5	3	0	0	3	3	3	0	7TM	diverse	intracellular	signalling
Glycos_transf_2	PF00535.21	gi|257052144|ref|YP_003129977.1|	-	1.3e-22	80.2	0.0	2.7e-22	79.2	0.0	1.5	2	0	0	2	2	2	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|257052144|ref|YP_003129977.1|	-	0.0011	18.8	0.3	0.0021	17.8	0.2	1.5	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
MreC	PF04085.9	gi|257052144|ref|YP_003129977.1|	-	0.0013	18.2	2.8	0.0023	17.3	1.9	1.3	1	0	0	1	1	1	1	rod	shape-determining	protein	MreC
DUF374	PF04028.8	gi|257052144|ref|YP_003129977.1|	-	0.0014	17.7	0.1	0.0053	15.9	0.1	1.9	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF374)
DRTGG	PF07085.7	gi|257052144|ref|YP_003129977.1|	-	0.061	12.9	0.0	0.22	11.1	0.0	1.9	1	0	0	1	1	1	0	DRTGG	domain
DUF373	PF04123.8	gi|257052144|ref|YP_003129977.1|	-	1.9	7.4	6.0	0.69	8.8	0.6	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF373)
Epimerase_2	PF02350.14	gi|257052145|ref|YP_003129978.1|	-	1.1e-109	366.4	0.0	1.3e-109	366.2	0.0	1.0	1	0	0	1	1	1	1	UDP-N-acetylglucosamine	2-epimerase
DUF354	PF04007.7	gi|257052145|ref|YP_003129978.1|	-	0.016	14.0	0.0	0.028	13.2	0.0	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF354)
Glyco_trans_4_4	PF13579.1	gi|257052145|ref|YP_003129978.1|	-	0.024	14.7	0.0	0.082	13.0	0.0	2.0	1	1	0	1	1	1	0	Glycosyl	transferase	4-like	domain
DUF2148	PF09918.4	gi|257052145|ref|YP_003129978.1|	-	0.054	13.2	0.0	0.12	12.1	0.0	1.6	1	0	0	1	1	1	0	Uncharacterized	protein	containing	a	ferredoxin	domain	(DUF2148)
UDPG_MGDP_dh_N	PF03721.9	gi|257052146|ref|YP_003129979.1|	-	1.2e-49	168.2	0.1	2e-49	167.4	0.1	1.3	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
UDPG_MGDP_dh	PF00984.14	gi|257052146|ref|YP_003129979.1|	-	1.2e-26	92.7	0.0	2.1e-26	91.9	0.0	1.4	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	central	domain
UDPG_MGDP_dh_C	PF03720.10	gi|257052146|ref|YP_003129979.1|	-	5.1e-20	71.5	0.2	1e-18	67.4	0.0	3.0	2	2	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
NAD_binding_2	PF03446.10	gi|257052146|ref|YP_003129979.1|	-	5.6e-08	32.7	0.0	1.4e-07	31.5	0.0	1.7	1	1	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
TrkA_N	PF02254.13	gi|257052146|ref|YP_003129979.1|	-	3.2e-06	27.1	0.3	0.0026	17.7	0.0	2.6	2	0	0	2	2	2	2	TrkA-N	domain
ApbA	PF02558.11	gi|257052146|ref|YP_003129979.1|	-	5.6e-06	25.8	0.0	1.7e-05	24.3	0.0	1.9	1	1	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
3HCDH_N	PF02737.13	gi|257052146|ref|YP_003129979.1|	-	0.0027	17.4	0.0	0.0047	16.6	0.0	1.5	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.14	gi|257052146|ref|YP_003129979.1|	-	0.0061	15.7	0.0	0.11	11.6	0.0	2.6	2	0	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_Gly3P_dh_N	PF01210.18	gi|257052146|ref|YP_003129979.1|	-	0.0065	16.2	0.0	0.11	12.1	0.0	2.7	3	0	0	3	3	3	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
NAD_binding_11	PF14833.1	gi|257052146|ref|YP_003129979.1|	-	0.012	15.6	0.0	0.028	14.4	0.0	1.6	1	0	0	1	1	1	0	NAD-binding	of	NADP-dependent	3-hydroxyisobutyrate	dehydrogenase
Pyr_redox	PF00070.22	gi|257052146|ref|YP_003129979.1|	-	0.02	15.3	0.0	0.066	13.6	0.0	2.0	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
F420_oxidored	PF03807.12	gi|257052146|ref|YP_003129979.1|	-	0.093	13.1	0.4	5.4	7.5	0.1	2.9	2	1	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
DUF354	PF04007.7	gi|257052147|ref|YP_003129980.1|	-	3.1e-64	216.9	0.0	3.5e-64	216.7	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF354)
Epimerase_2	PF02350.14	gi|257052147|ref|YP_003129980.1|	-	0.0089	14.8	0.0	0.015	14.0	0.0	1.4	1	0	0	1	1	1	1	UDP-N-acetylglucosamine	2-epimerase
Glyco_trans_4_2	PF13477.1	gi|257052148|ref|YP_003129981.1|	-	3.5e-13	49.5	0.0	5.8e-13	48.8	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	4-like
Glycos_transf_1	PF00534.15	gi|257052148|ref|YP_003129981.1|	-	2.4e-09	36.8	0.0	4.5e-09	35.9	0.0	1.4	1	1	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|257052148|ref|YP_003129981.1|	-	3.2e-07	30.5	0.0	7.2e-07	29.4	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.1	gi|257052148|ref|YP_003129981.1|	-	0.00088	19.4	0.0	0.0014	18.7	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.1	gi|257052148|ref|YP_003129981.1|	-	0.015	15.5	0.0	0.041	14.1	0.0	1.8	1	1	0	1	1	1	0	Glycosyl	transferases	group	1
DUF2897	PF11446.3	gi|257052149|ref|YP_003129982.1|	-	2.1	8.2	3.8	8.9	6.2	0.0	2.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2897)
DUF563	PF04577.9	gi|257052151|ref|YP_003129984.1|	-	2.5e-40	138.6	0.0	4.3e-40	137.8	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF563)
DUF1565	PF07602.6	gi|257052152|ref|YP_003129985.1|	-	0.0061	15.7	1.3	0.012	14.8	0.3	1.9	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1565)
Sulfatase	PF00884.18	gi|257052153|ref|YP_003129986.1|	-	9.7e-31	107.0	0.0	1.4e-30	106.5	0.0	1.2	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.17	gi|257052153|ref|YP_003129986.1|	-	0.00028	20.3	1.3	0.39	9.9	0.1	2.4	2	0	0	2	2	2	2	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF3584	PF12128.3	gi|257052153|ref|YP_003129986.1|	-	0.03	11.6	0.8	0.043	11.1	0.5	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
Polysacc_synt_C	PF14667.1	gi|257052154|ref|YP_003129987.1|	-	3.5e-22	78.7	13.1	3.5e-22	78.7	9.1	3.5	3	0	0	3	3	3	1	Polysaccharide	biosynthesis	C-terminal	domain
Polysacc_synt	PF01943.12	gi|257052154|ref|YP_003129987.1|	-	9.8e-18	64.3	36.3	1.5e-10	40.7	2.5	3.2	3	0	0	3	3	3	3	Polysaccharide	biosynthesis	protein
Polysacc_synt_3	PF13440.1	gi|257052154|ref|YP_003129987.1|	-	5.3e-13	49.0	33.1	1.6e-12	47.4	8.8	2.3	2	0	0	2	2	2	2	Polysaccharide	biosynthesis	protein
MVIN	PF03023.9	gi|257052154|ref|YP_003129987.1|	-	0.00027	19.4	16.4	0.00038	19.0	10.4	2.1	1	1	0	1	1	1	1	MviN-like	protein
Sulfatase	PF00884.18	gi|257052155|ref|YP_003129988.1|	-	0.0032	16.7	0.0	0.0042	16.3	0.0	1.2	1	0	0	1	1	1	1	Sulfatase
PglZ	PF08665.7	gi|257052155|ref|YP_003129988.1|	-	0.13	11.9	0.1	0.63	9.6	0.0	1.9	2	0	0	2	2	2	0	PglZ	domain
DDE_Tnp_1	PF01609.16	gi|257052156|ref|YP_003129989.1|	-	8.7e-18	64.6	4.0	3.3e-17	62.7	2.8	1.8	1	1	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_3	PF13612.1	gi|257052156|ref|YP_003129989.1|	-	0.00021	21.0	0.0	0.00042	20.0	0.0	1.5	1	1	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_2	PF13586.1	gi|257052156|ref|YP_003129989.1|	-	0.00023	21.2	0.2	0.0006	19.9	0.1	1.7	1	0	0	1	1	1	1	Transposase	DDE	domain
DUF1156	PF06634.7	gi|257052156|ref|YP_003129989.1|	-	0.02	14.6	0.9	0.051	13.3	0.6	1.8	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1156)
DDE_Tnp_1_6	PF13751.1	gi|257052156|ref|YP_003129989.1|	-	0.028	14.4	0.1	0.052	13.5	0.1	1.4	1	0	0	1	1	1	0	Transposase	DDE	domain
Epimerase	PF01370.16	gi|257052157|ref|YP_003129990.1|	-	8.6e-65	218.4	0.0	1.1e-64	218.1	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.14	gi|257052157|ref|YP_003129990.1|	-	2.1e-28	98.8	0.0	2.9e-28	98.3	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.12	gi|257052157|ref|YP_003129990.1|	-	3.2e-22	78.7	0.0	4.6e-22	78.2	0.0	1.2	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Polysacc_synt_2	PF02719.10	gi|257052157|ref|YP_003129990.1|	-	3.7e-18	65.4	0.0	2.5e-17	62.7	0.0	1.9	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.7	gi|257052157|ref|YP_003129990.1|	-	1.9e-13	49.9	0.1	8.5e-13	47.8	0.1	1.9	1	1	0	1	1	1	1	Male	sterility	protein
NAD_binding_10	PF13460.1	gi|257052157|ref|YP_003129990.1|	-	7.7e-13	48.8	0.5	4e-12	46.4	0.3	1.9	1	1	0	1	1	1	1	NADH(P)-binding
adh_short	PF00106.20	gi|257052157|ref|YP_003129990.1|	-	8.1e-13	48.6	0.0	2.3e-12	47.1	0.0	1.8	2	0	0	2	2	2	1	short	chain	dehydrogenase
KR	PF08659.5	gi|257052157|ref|YP_003129990.1|	-	7.2e-08	32.2	0.0	3.4e-07	30.0	0.0	2.0	1	1	0	1	1	1	1	KR	domain
NmrA	PF05368.8	gi|257052157|ref|YP_003129990.1|	-	8.3e-08	31.7	0.0	1.2e-07	31.2	0.0	1.3	1	1	0	1	1	1	1	NmrA-like	family
Epimerase_Csub	PF13950.1	gi|257052157|ref|YP_003129990.1|	-	0.014	15.2	0.0	0.036	14.0	0.0	1.7	1	0	0	1	1	1	0	UDP-glucose	4-epimerase	C-term	subunit
3HCDH_N	PF02737.13	gi|257052157|ref|YP_003129990.1|	-	0.018	14.6	0.1	0.053	13.1	0.1	1.8	1	1	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
TrkA_N	PF02254.13	gi|257052157|ref|YP_003129990.1|	-	0.1	12.5	1.9	0.71	9.8	0.6	2.5	2	1	0	2	2	2	0	TrkA-N	domain
AAA_16	PF13191.1	gi|257052158|ref|YP_003129991.1|	-	6.8e-16	58.7	3.1	1.1e-15	58.0	0.4	2.4	1	1	1	2	2	2	1	AAA	ATPase	domain
Cdc6_C	PF09079.6	gi|257052158|ref|YP_003129991.1|	-	1.8e-13	50.0	0.0	3.7e-13	49.0	0.0	1.6	1	0	0	1	1	1	1	CDC6,	C	terminal
AAA_22	PF13401.1	gi|257052158|ref|YP_003129991.1|	-	5.4e-10	39.5	0.0	1.2e-09	38.3	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
Arch_ATPase	PF01637.13	gi|257052158|ref|YP_003129991.1|	-	0.00031	20.5	0.0	0.00057	19.6	0.0	1.4	1	0	0	1	1	1	1	Archaeal	ATPase
AAA	PF00004.24	gi|257052158|ref|YP_003129991.1|	-	0.0011	19.1	0.0	0.0036	17.4	0.0	1.9	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
NACHT	PF05729.7	gi|257052158|ref|YP_003129991.1|	-	0.016	14.8	0.0	0.025	14.2	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
DUF2791	PF10923.3	gi|257052158|ref|YP_003129991.1|	-	0.017	13.7	0.0	0.03	12.9	0.0	1.4	1	0	0	1	1	1	0	P-loop	Domain	of	unknown	function	(DUF2791)
Sigma54_activat	PF00158.21	gi|257052158|ref|YP_003129991.1|	-	0.025	14.0	0.0	0.058	12.8	0.0	1.6	1	0	0	1	1	1	0	Sigma-54	interaction	domain
HTH_21	PF13276.1	gi|257052158|ref|YP_003129991.1|	-	0.052	13.5	0.0	0.23	11.4	0.0	2.0	2	0	0	2	2	2	0	HTH-like	domain
AAA_5	PF07728.9	gi|257052158|ref|YP_003129991.1|	-	0.063	13.0	0.0	0.65	9.7	0.0	2.5	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_32	PF13654.1	gi|257052158|ref|YP_003129991.1|	-	0.065	11.8	0.6	0.47	9.0	0.2	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_2	PF07724.9	gi|257052158|ref|YP_003129991.1|	-	0.067	13.0	0.0	0.19	11.5	0.0	1.7	2	0	0	2	2	2	0	AAA	domain	(Cdc48	subfamily)
DUF2075	PF09848.4	gi|257052158|ref|YP_003129991.1|	-	0.098	11.6	0.0	0.14	11.1	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_17	PF13207.1	gi|257052158|ref|YP_003129991.1|	-	0.43	11.4	2.3	4	8.2	1.4	2.7	1	1	0	1	1	1	0	AAA	domain
TrmB	PF01978.14	gi|257052159|ref|YP_003129992.1|	-	2.7e-07	30.2	0.0	4.2e-07	29.5	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.2	gi|257052159|ref|YP_003129992.1|	-	3.6e-06	26.6	0.0	8.3e-06	25.5	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
Penicillinase_R	PF03965.11	gi|257052159|ref|YP_003129992.1|	-	9.1e-05	22.5	0.0	0.00014	21.8	0.0	1.3	1	0	0	1	1	1	1	Penicillinase	repressor
HTH_29	PF13551.1	gi|257052159|ref|YP_003129992.1|	-	0.0034	17.4	0.0	0.0056	16.8	0.0	1.5	1	1	0	1	1	1	1	Winged	helix-turn	helix
HTH_11	PF08279.7	gi|257052159|ref|YP_003129992.1|	-	0.006	16.2	0.0	0.01	15.4	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
HTH_17	PF12728.2	gi|257052159|ref|YP_003129992.1|	-	0.0072	16.5	0.4	1.1	9.5	0.0	2.6	3	0	0	3	3	2	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|257052159|ref|YP_003129992.1|	-	0.009	15.6	0.0	0.019	14.6	0.0	1.5	1	0	0	1	1	1	1	MarR	family
DUF4423	PF14394.1	gi|257052159|ref|YP_003129992.1|	-	0.0094	15.5	0.0	0.014	14.9	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4423)
MotA_activ	PF09114.5	gi|257052159|ref|YP_003129992.1|	-	0.018	14.7	0.0	0.028	14.1	0.0	1.4	1	0	0	1	1	1	0	Transcription	factor	MotA,	activation	domain
Cdc6_C	PF09079.6	gi|257052159|ref|YP_003129992.1|	-	0.05	13.3	0.0	0.08	12.6	0.0	1.4	1	0	0	1	1	1	0	CDC6,	C	terminal
HTH_27	PF13463.1	gi|257052159|ref|YP_003129992.1|	-	0.057	13.7	0.0	0.12	12.7	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_IclR	PF09339.5	gi|257052159|ref|YP_003129992.1|	-	0.06	12.9	0.0	0.14	11.7	0.0	1.6	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_43	PF09904.4	gi|257052159|ref|YP_003129992.1|	-	0.06	13.1	0.0	0.11	12.3	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_40	PF14493.1	gi|257052159|ref|YP_003129992.1|	-	0.069	13.3	0.1	0.13	12.5	0.1	1.7	1	1	0	1	1	1	0	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|257052159|ref|YP_003129992.1|	-	0.1	12.2	0.1	0.25	11.0	0.0	1.7	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
Terminase_5	PF06056.7	gi|257052159|ref|YP_003129992.1|	-	0.11	12.0	0.0	0.25	10.9	0.0	1.6	1	0	0	1	1	1	0	Putative	ATPase	subunit	of	terminase	(gpP-like)
DUF2250	PF10007.4	gi|257052159|ref|YP_003129992.1|	-	0.12	12.3	0.0	0.26	11.1	0.0	1.5	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_20	PF12840.2	gi|257052160|ref|YP_003129993.1|	-	0.00016	21.4	0.2	0.00025	20.7	0.0	1.5	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_11	PF08279.7	gi|257052160|ref|YP_003129993.1|	-	0.00035	20.1	0.0	0.00056	19.4	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
HTH_Crp_2	PF13545.1	gi|257052160|ref|YP_003129993.1|	-	0.00059	19.5	0.0	0.00082	19.1	0.0	1.3	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
MarR_2	PF12802.2	gi|257052160|ref|YP_003129993.1|	-	0.008	15.8	0.0	0.013	15.1	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_36	PF13730.1	gi|257052160|ref|YP_003129993.1|	-	0.033	14.2	0.0	0.043	13.9	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|257052160|ref|YP_003129993.1|	-	0.05	13.2	0.0	0.094	12.4	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_IclR	PF09339.5	gi|257052160|ref|YP_003129993.1|	-	0.055	13.0	0.0	0.092	12.3	0.0	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_24	PF13412.1	gi|257052160|ref|YP_003129993.1|	-	0.081	12.3	0.0	0.14	11.5	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Phage_CI_repr	PF07022.8	gi|257052160|ref|YP_003129993.1|	-	0.14	12.2	0.0	0.21	11.7	0.0	1.5	1	0	0	1	1	1	0	Bacteriophage	CI	repressor	helix-turn-helix	domain
TrmB	PF01978.14	gi|257052160|ref|YP_003129993.1|	-	0.15	11.8	0.0	0.23	11.1	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Arch_ATPase	PF01637.13	gi|257052162|ref|YP_003129995.1|	-	1.5e-23	83.7	0.0	8.6e-23	81.2	0.0	2.0	1	1	0	1	1	1	1	Archaeal	ATPase
DUF234	PF03008.9	gi|257052162|ref|YP_003129995.1|	-	1.7e-15	56.9	0.0	5.7e-15	55.2	0.0	1.8	2	0	0	2	2	2	1	Archaea	bacterial	proteins	of	unknown	function
AAA_16	PF13191.1	gi|257052162|ref|YP_003129995.1|	-	1.3e-06	28.5	0.0	2.5e-06	27.6	0.0	1.4	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_14	PF13173.1	gi|257052162|ref|YP_003129995.1|	-	1.4e-05	24.9	0.0	2.4e-05	24.2	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|257052162|ref|YP_003129995.1|	-	0.00033	20.8	0.0	0.00063	19.8	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
Miro	PF08477.8	gi|257052162|ref|YP_003129995.1|	-	0.12	12.8	0.0	0.25	11.8	0.0	1.5	1	0	0	1	1	1	0	Miro-like	protein
DUF58	PF01882.13	gi|257052164|ref|YP_003129997.1|	-	2.8e-21	75.4	0.2	7.2e-21	74.1	0.0	1.8	2	0	0	2	2	2	1	Protein	of	unknown	function	DUF58
DUF457	PF04307.9	gi|257052167|ref|YP_003130000.1|	-	2.1e-09	36.9	10.0	4e-09	35.9	6.9	1.5	1	1	0	1	1	1	1	Predicted	membrane-bound	metal-dependent	hydrolase	(DUF457)
BPD_transp_2	PF02653.11	gi|257052167|ref|YP_003130000.1|	-	0.037	12.9	1.8	0.044	12.7	1.3	1.2	1	0	0	1	1	1	0	Branched-chain	amino	acid	transport	system	/	permease	component
O-antigen_lig	PF13425.1	gi|257052168|ref|YP_003130001.1|	-	0.12	12.4	7.1	0.13	12.2	4.9	1.0	1	0	0	1	1	1	0	O-antigen	ligase	like	membrane	protein
Acyl_transf_3	PF01757.17	gi|257052168|ref|YP_003130001.1|	-	0.13	11.1	8.5	0.18	10.6	5.9	1.3	1	1	0	1	1	1	0	Acyltransferase	family
NrfD	PF03916.9	gi|257052168|ref|YP_003130001.1|	-	0.15	11.4	7.0	0.15	11.4	4.9	1.1	1	0	0	1	1	1	0	Polysulphide	reductase,	NrfD
PEX11	PF05648.9	gi|257052168|ref|YP_003130001.1|	-	0.17	11.1	1.2	0.2	10.9	0.9	1.0	1	0	0	1	1	1	0	Peroxisomal	biogenesis	factor	11	(PEX11)
DUF423	PF04241.10	gi|257052168|ref|YP_003130001.1|	-	0.18	11.7	0.7	0.28	11.1	0.5	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF423)
TraX	PF05857.6	gi|257052168|ref|YP_003130001.1|	-	0.37	10.4	3.8	0.41	10.2	2.6	1.0	1	0	0	1	1	1	0	TraX	protein
DUF3382	PF11862.3	gi|257052168|ref|YP_003130001.1|	-	0.38	10.7	7.8	1.9	8.4	5.4	1.9	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF3382)
DUF4233	PF14017.1	gi|257052168|ref|YP_003130001.1|	-	1.2	9.0	7.9	1.5	8.7	5.4	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4233)
DUF3429	PF11911.3	gi|257052168|ref|YP_003130001.1|	-	2.1	8.3	8.4	2.4	8.1	5.8	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3429)
DUF4350	PF14258.1	gi|257052169|ref|YP_003130002.1|	-	2.8e-06	27.4	0.5	8e-06	25.9	0.3	1.8	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4350)
ABC_transp_aux	PF09822.4	gi|257052169|ref|YP_003130002.1|	-	0.0032	16.9	0.0	0.0048	16.4	0.0	1.2	1	0	0	1	1	1	1	ABC-type	uncharacterized	transport	system
Mitofilin	PF09731.4	gi|257052169|ref|YP_003130002.1|	-	0.14	10.7	0.0	0.19	10.3	0.0	1.1	1	0	0	1	1	1	0	Mitochondrial	inner	membrane	protein
DUF4129	PF13559.1	gi|257052170|ref|YP_003130003.1|	-	6.2e-06	26.0	7.1	6.2e-06	26.0	4.9	3.0	2	2	0	3	3	3	1	Domain	of	unknown	function	(DUF4129)
FlaC_arch	PF05377.6	gi|257052170|ref|YP_003130003.1|	-	0.06	13.2	0.0	4.6	7.2	0.0	2.8	2	0	0	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
Elongin_A	PF06881.6	gi|257052170|ref|YP_003130003.1|	-	0.12	12.8	1.1	0.23	11.8	0.8	1.4	1	0	0	1	1	1	0	RNA	polymerase	II	transcription	factor	SIII	(Elongin)	subunit	A
Snapin_Pallidin	PF14712.1	gi|257052170|ref|YP_003130003.1|	-	0.43	10.9	2.8	1	9.7	2.0	1.6	1	0	0	1	1	1	0	Snapin/Pallidin
MbeD_MobD	PF04899.7	gi|257052170|ref|YP_003130003.1|	-	0.43	10.5	4.7	0.67	9.8	2.1	2.1	2	0	0	2	2	2	0	MbeD/MobD	like
AAA_3	PF07726.6	gi|257052171|ref|YP_003130004.1|	-	5.9e-61	203.8	0.1	9.1e-61	203.2	0.1	1.3	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_5	PF07728.9	gi|257052171|ref|YP_003130004.1|	-	1.9e-17	63.2	0.0	3.3e-17	62.5	0.0	1.4	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
MCM	PF00493.18	gi|257052171|ref|YP_003130004.1|	-	2.8e-06	26.3	0.0	5.3e-06	25.4	0.0	1.6	1	1	0	1	1	1	1	MCM2/3/5	family
Sigma54_activat	PF00158.21	gi|257052171|ref|YP_003130004.1|	-	7.9e-05	22.1	0.0	0.0016	17.9	0.0	2.2	1	1	0	1	1	1	1	Sigma-54	interaction	domain
AAA	PF00004.24	gi|257052171|ref|YP_003130004.1|	-	0.00028	21.0	0.0	0.0011	19.2	0.0	1.9	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
RuvB_N	PF05496.7	gi|257052171|ref|YP_003130004.1|	-	0.00033	19.7	0.7	0.0017	17.4	0.1	2.4	2	1	0	2	2	2	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_17	PF13207.1	gi|257052171|ref|YP_003130004.1|	-	0.0053	17.5	0.1	0.012	16.3	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
Mg_chelatase	PF01078.16	gi|257052171|ref|YP_003130004.1|	-	0.053	12.6	0.1	7.2	5.7	0.0	2.2	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
AAA_22	PF13401.1	gi|257052171|ref|YP_003130004.1|	-	0.069	13.2	0.5	0.61	10.2	0.0	2.7	3	2	0	3	3	3	0	AAA	domain
DUF1543	PF07566.7	gi|257052171|ref|YP_003130004.1|	-	0.093	12.2	0.0	0.29	10.6	0.0	1.8	1	0	0	1	1	1	0	Domain	of	Unknown	Function	(DUF1543)
TM_helix	PF05552.7	gi|257052172|ref|YP_003130005.1|	-	0.0022	17.6	1.8	0.025	14.2	0.1	2.9	2	0	0	2	2	2	1	Conserved	TM	helix
FtsX	PF02687.16	gi|257052173|ref|YP_003130006.1|	-	5.3e-22	77.8	35.6	8.6e-12	44.8	6.1	3.4	3	0	0	3	3	3	2	FtsX-like	permease	family
CARDB	PF07705.6	gi|257052173|ref|YP_003130006.1|	-	0.0021	18.0	3.7	0.56	10.2	0.1	2.6	2	0	0	2	2	2	2	CARDB
DUF4480	PF13715.1	gi|257052173|ref|YP_003130006.1|	-	0.0035	17.3	0.1	0.012	15.6	0.1	1.8	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4480)
DUF756	PF05506.7	gi|257052173|ref|YP_003130006.1|	-	0.12	12.8	2.4	0.81	10.2	0.0	3.0	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF756)
Big_3	PF07523.7	gi|257052173|ref|YP_003130006.1|	-	0.42	10.7	6.9	4.5	7.4	0.3	3.0	2	1	0	2	2	2	0	Bacterial	Ig-like	domain	(group	3)
FixH	PF05751.6	gi|257052173|ref|YP_003130006.1|	-	4.4	7.0	7.0	4.1	7.1	0.0	4.2	3	1	1	4	4	4	0	FixH
ABC_tran	PF00005.22	gi|257052174|ref|YP_003130007.1|	-	1.3e-30	106.5	0.0	1.7e-30	106.0	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|257052174|ref|YP_003130007.1|	-	2.3e-07	31.0	0.0	0.0062	16.5	0.0	2.1	1	1	0	2	2	2	2	AAA	domain
AAA_29	PF13555.1	gi|257052174|ref|YP_003130007.1|	-	0.00018	20.9	0.1	0.00039	19.9	0.1	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
SbcCD_C	PF13558.1	gi|257052174|ref|YP_003130007.1|	-	0.00065	19.5	0.1	0.0083	16.0	0.0	2.4	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_16	PF13191.1	gi|257052174|ref|YP_003130007.1|	-	0.00066	19.7	0.2	0.0011	18.9	0.1	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
SMC_N	PF02463.14	gi|257052174|ref|YP_003130007.1|	-	0.00066	18.9	0.0	0.022	13.9	0.0	2.1	1	1	1	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
DEAD	PF00270.24	gi|257052174|ref|YP_003130007.1|	-	0.0086	15.5	0.0	0.01	15.3	0.0	1.4	1	1	0	1	1	1	1	DEAD/DEAH	box	helicase
NACHT	PF05729.7	gi|257052174|ref|YP_003130007.1|	-	0.014	15.0	2.4	0.023	14.3	0.2	2.2	2	1	1	3	3	3	0	NACHT	domain
AAA_17	PF13207.1	gi|257052174|ref|YP_003130007.1|	-	0.037	14.8	0.3	0.095	13.5	0.2	1.9	1	1	0	1	1	1	0	AAA	domain
G-alpha	PF00503.15	gi|257052174|ref|YP_003130007.1|	-	0.044	12.4	0.0	0.045	12.4	0.0	1.1	1	0	0	1	1	1	0	G-protein	alpha	subunit
T2SE	PF00437.15	gi|257052174|ref|YP_003130007.1|	-	0.047	12.5	0.1	0.076	11.9	0.1	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
KaiC	PF06745.8	gi|257052174|ref|YP_003130007.1|	-	0.049	12.7	0.0	0.084	11.9	0.0	1.4	1	0	0	1	1	1	0	KaiC
AAA_18	PF13238.1	gi|257052174|ref|YP_003130007.1|	-	0.088	13.1	0.0	0.17	12.1	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_19	PF13245.1	gi|257052174|ref|YP_003130007.1|	-	0.089	12.5	0.5	0.19	11.4	0.1	1.8	2	0	0	2	2	2	0	Part	of	AAA	domain
DUF258	PF03193.11	gi|257052174|ref|YP_003130007.1|	-	0.11	11.7	0.0	0.15	11.2	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
Mg_chelatase	PF01078.16	gi|257052174|ref|YP_003130007.1|	-	0.15	11.2	0.0	0.28	10.3	0.0	1.5	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
Xan_ur_permease	PF00860.15	gi|257052175|ref|YP_003130008.1|	-	7.6e-81	271.5	37.2	1.2e-80	270.8	25.8	1.3	1	0	0	1	1	1	1	Permease	family
Polysacc_deac_1	PF01522.16	gi|257052176|ref|YP_003130009.1|	-	3.5e-15	55.7	0.0	8.6e-15	54.4	0.0	1.6	1	0	0	1	1	1	1	Polysaccharide	deacetylase
NESP55	PF06390.7	gi|257052176|ref|YP_003130009.1|	-	0.0015	18.0	16.2	0.0023	17.3	11.3	1.3	1	0	0	1	1	1	1	Neuroendocrine-specific	golgi	protein	P55	(NESP55)
Trypan_PARP	PF05887.6	gi|257052176|ref|YP_003130009.1|	-	0.012	15.3	21.3	0.026	14.3	14.8	1.5	1	0	0	1	1	1	0	Procyclic	acidic	repetitive	protein	(PARP)
TAT_signal	PF10518.4	gi|257052176|ref|YP_003130009.1|	-	0.02	14.8	0.6	0.02	14.8	0.4	1.8	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Daxx	PF03344.10	gi|257052176|ref|YP_003130009.1|	-	0.53	8.7	9.8	0.67	8.3	6.8	1.1	1	0	0	1	1	1	0	Daxx	Family
PKD	PF00801.15	gi|257052176|ref|YP_003130009.1|	-	0.91	9.3	5.9	1.7	8.4	0.4	2.7	2	1	0	2	2	2	0	PKD	domain
Tim54	PF11711.3	gi|257052176|ref|YP_003130009.1|	-	7.7	4.9	7.4	12	4.4	5.1	1.1	1	0	0	1	1	1	0	Inner	membrane	protein	import	complex	subunit	Tim54
Polysacc_deac_1	PF01522.16	gi|257052177|ref|YP_003130010.1|	-	3.8e-08	32.9	0.0	9.4e-08	31.7	0.0	1.6	1	0	0	1	1	1	1	Polysaccharide	deacetylase
PKD	PF00801.15	gi|257052177|ref|YP_003130010.1|	-	0.59	9.9	6.0	0.37	10.5	0.3	2.9	2	1	1	3	3	3	0	PKD	domain
Mucin	PF01456.12	gi|257052177|ref|YP_003130010.1|	-	3.6	7.3	14.1	7	6.4	9.8	1.4	1	0	0	1	1	1	0	Mucin-like	glycoprotein
YqfQ	PF14181.1	gi|257052177|ref|YP_003130010.1|	-	5.1	7.1	7.2	7.4	6.5	5.0	1.3	1	0	0	1	1	1	0	YqfQ-like	protein
NESP55	PF06390.7	gi|257052177|ref|YP_003130010.1|	-	5.7	6.2	23.7	9.2	5.5	16.4	1.2	1	0	0	1	1	1	0	Neuroendocrine-specific	golgi	protein	P55	(NESP55)
Trypan_PARP	PF05887.6	gi|257052177|ref|YP_003130010.1|	-	8.3	6.2	23.3	16	5.2	16.2	1.4	1	0	0	1	1	1	0	Procyclic	acidic	repetitive	protein	(PARP)
Auto_anti-p27	PF06677.7	gi|257052178|ref|YP_003130011.1|	-	2e-19	69.0	0.5	3e-19	68.4	0.4	1.2	1	0	0	1	1	1	1	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
DZR	PF12773.2	gi|257052178|ref|YP_003130011.1|	-	0.013	15.3	1.9	0.025	14.4	1.3	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-dskA_traR	PF01258.12	gi|257052178|ref|YP_003130011.1|	-	0.039	13.6	2.9	0.087	12.5	2.0	1.5	1	0	0	1	1	1	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
DUF3279	PF11682.3	gi|257052178|ref|YP_003130011.1|	-	0.06	12.9	0.2	0.097	12.2	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3279)
GFA	PF04828.9	gi|257052178|ref|YP_003130011.1|	-	0.067	13.1	1.8	0.37	10.7	0.0	2.2	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
A2L_zn_ribbon	PF08792.5	gi|257052178|ref|YP_003130011.1|	-	0.11	11.9	0.8	0.19	11.2	0.5	1.4	1	0	0	1	1	1	0	A2L	zinc	ribbon	domain
Zn_Tnp_IS91	PF14319.1	gi|257052178|ref|YP_003130011.1|	-	0.13	11.8	0.9	0.23	10.9	0.6	1.3	1	0	0	1	1	1	0	Transposase	zinc-binding	domain
zf-FPG_IleRS	PF06827.9	gi|257052178|ref|YP_003130011.1|	-	0.34	10.6	2.3	0.89	9.2	1.6	1.7	1	1	0	1	1	1	0	Zinc	finger	found	in	FPG	and	IleRS
DUF2116	PF09889.4	gi|257052178|ref|YP_003130011.1|	-	2.1	8.2	5.5	7.3	6.4	0.5	2.2	2	0	0	2	2	2	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
DUF3179	PF11376.3	gi|257052179|ref|YP_003130012.1|	-	3.3e-88	295.2	0.0	3.9e-88	295.0	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3179)
BA14K	PF07886.6	gi|257052179|ref|YP_003130012.1|	-	1.1	8.9	4.1	3.2	7.5	2.8	1.7	1	0	0	1	1	1	0	BA14K-like	protein
MerT	PF02411.10	gi|257052180|ref|YP_003130013.1|	-	0.011	15.5	2.5	0.011	15.5	1.7	1.8	2	0	0	2	2	2	0	MerT	mercuric	transport	protein
Ammonium_transp	PF00909.16	gi|257052180|ref|YP_003130013.1|	-	0.089	11.2	8.7	0.019	13.4	3.5	1.6	2	0	0	2	2	2	0	Ammonium	Transporter	Family
MMR_HSR1	PF01926.18	gi|257052181|ref|YP_003130014.1|	-	1.6e-16	60.2	0.0	2.4e-16	59.7	0.0	1.3	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
FeoB_N	PF02421.13	gi|257052181|ref|YP_003130014.1|	-	1.8e-13	50.0	0.0	3e-12	46.1	0.0	2.0	1	1	0	1	1	1	1	Ferrous	iron	transport	protein	B
GTP_EFTU	PF00009.22	gi|257052181|ref|YP_003130014.1|	-	8.8e-08	31.7	0.0	5.9e-05	22.5	0.0	2.2	2	0	0	2	2	2	2	Elongation	factor	Tu	GTP	binding	domain
AAA_18	PF13238.1	gi|257052181|ref|YP_003130014.1|	-	0.00037	20.8	0.0	0.00058	20.1	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
ArgK	PF03308.11	gi|257052181|ref|YP_003130014.1|	-	0.00066	18.5	0.5	0.88	8.2	0.0	2.4	3	0	0	3	3	3	2	ArgK	protein
TIP49	PF06068.8	gi|257052181|ref|YP_003130014.1|	-	0.003	16.3	0.1	0.0049	15.6	0.1	1.2	1	0	0	1	1	1	1	TIP49	C-terminus
MobB	PF03205.9	gi|257052181|ref|YP_003130014.1|	-	0.0069	16.0	0.0	0.03	14.0	0.0	1.9	2	0	0	2	2	2	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Miro	PF08477.8	gi|257052181|ref|YP_003130014.1|	-	0.0072	16.8	0.0	0.018	15.5	0.0	1.8	1	1	1	2	2	2	1	Miro-like	protein
DUF258	PF03193.11	gi|257052181|ref|YP_003130014.1|	-	0.0084	15.3	0.1	0.018	14.2	0.0	1.5	1	1	0	1	1	1	1	Protein	of	unknown	function,	DUF258
Dynamin_N	PF00350.18	gi|257052181|ref|YP_003130014.1|	-	0.01	15.6	0.1	1.5	8.6	0.0	2.2	1	1	1	2	2	2	0	Dynamin	family
ATP_bind_1	PF03029.12	gi|257052181|ref|YP_003130014.1|	-	0.017	14.6	0.4	3.3	7.1	0.0	2.5	2	1	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
AAA_10	PF12846.2	gi|257052181|ref|YP_003130014.1|	-	0.021	14.2	0.0	0.032	13.6	0.0	1.4	1	0	0	1	1	1	0	AAA-like	domain
Ras	PF00071.17	gi|257052181|ref|YP_003130014.1|	-	0.023	14.0	0.0	0.054	12.8	0.0	1.6	2	0	0	2	2	2	0	Ras	family
AAA_17	PF13207.1	gi|257052181|ref|YP_003130014.1|	-	0.028	15.2	0.0	0.067	14.0	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
AIG1	PF04548.11	gi|257052181|ref|YP_003130014.1|	-	0.033	13.2	0.0	0.038	13.0	0.0	1.3	1	0	0	1	1	1	0	AIG1	family
SRPRB	PF09439.5	gi|257052181|ref|YP_003130014.1|	-	0.041	13.0	0.0	0.058	12.6	0.0	1.3	1	0	0	1	1	1	0	Signal	recognition	particle	receptor	beta	subunit
AAA_29	PF13555.1	gi|257052181|ref|YP_003130014.1|	-	0.043	13.3	0.0	0.083	12.4	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_25	PF13481.1	gi|257052181|ref|YP_003130014.1|	-	0.051	12.9	0.1	0.32	10.3	0.0	2.1	1	1	1	2	2	2	0	AAA	domain
AAA_22	PF13401.1	gi|257052181|ref|YP_003130014.1|	-	0.054	13.6	0.0	0.97	9.5	0.0	2.3	2	1	0	2	2	2	0	AAA	domain
ABC_tran	PF00005.22	gi|257052181|ref|YP_003130014.1|	-	0.12	12.6	0.0	0.24	11.6	0.0	1.4	1	0	0	1	1	1	0	ABC	transporter
RNA_helicase	PF00910.17	gi|257052181|ref|YP_003130014.1|	-	0.17	12.0	0.0	0.3	11.2	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
PfkB	PF00294.19	gi|257052182|ref|YP_003130015.1|	-	3.9e-38	131.2	2.3	7.6e-38	130.3	1.6	1.4	1	1	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Phos_pyr_kin	PF08543.7	gi|257052182|ref|YP_003130015.1|	-	0.00067	18.9	0.1	0.0014	17.9	0.0	1.5	2	0	0	2	2	2	1	Phosphomethylpyrimidine	kinase
DUF457	PF04307.9	gi|257052184|ref|YP_003130017.1|	-	0.0029	16.9	6.4	0.0061	15.9	4.5	1.5	1	1	0	1	1	1	1	Predicted	membrane-bound	metal-dependent	hydrolase	(DUF457)
Ten1_2	PF15490.1	gi|257052185|ref|YP_003130018.1|	-	0.0043	16.6	0.0	0.0065	16.0	0.0	1.2	1	0	0	1	1	1	1	Telomere-capping,	CST	complex	subunit
DUF2370	PF10176.4	gi|257052185|ref|YP_003130018.1|	-	0.037	13.3	0.0	0.047	13.0	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2370)
TOBE	PF03459.12	gi|257052185|ref|YP_003130018.1|	-	0.075	13.1	0.4	0.16	12.0	0.3	1.6	1	0	0	1	1	1	0	TOBE	domain
DUF4131	PF13567.1	gi|257052185|ref|YP_003130018.1|	-	0.079	12.3	1.8	11	5.4	0.1	2.8	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4131)
Methyltrn_RNA_2	PF04013.7	gi|257052186|ref|YP_003130019.1|	-	1.1e-59	201.3	0.0	1.3e-59	201.1	0.0	1.0	1	0	0	1	1	1	1	Putative	SAM-dependent	RNA	methyltransferase
TetR_C_6	PF13977.1	gi|257052186|ref|YP_003130019.1|	-	0.15	12.1	2.6	0.15	12.1	0.5	1.9	2	0	0	2	2	2	0	Bacterial	transcriptional	repressor
PIN	PF01850.16	gi|257052189|ref|YP_003130022.1|	-	1.1e-09	38.6	0.0	2.2e-09	37.6	0.0	1.5	1	1	0	1	1	1	1	PIN	domain
XPG_I_2	PF12813.2	gi|257052189|ref|YP_003130022.1|	-	0.05	13.0	0.1	0.076	12.4	0.1	1.2	1	0	0	1	1	1	0	XPG	domain	containing
DUF4129	PF13559.1	gi|257052189|ref|YP_003130022.1|	-	0.058	13.3	0.1	0.11	12.4	0.1	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4129)
DUF217	PF02697.9	gi|257052190|ref|YP_003130023.1|	-	2.5e-07	30.8	3.9	3e-07	30.5	2.7	1.1	1	0	0	1	1	1	1	Uncharacterized	ACR,	COG1753
RHH_1	PF01402.16	gi|257052190|ref|YP_003130023.1|	-	3.5	7.6	6.8	1.9	8.4	0.2	2.4	2	0	0	2	2	2	0	Ribbon-helix-helix	protein,	copG	family
EF-1_beta_acid	PF10587.4	gi|257052190|ref|YP_003130023.1|	-	6	7.1	8.5	23	5.2	5.9	2.1	1	1	0	1	1	1	0	Eukaryotic	elongation	factor	1	beta	central	acidic	region
DUF3886	PF13025.1	gi|257052190|ref|YP_003130023.1|	-	9	6.3	14.0	2.9	7.8	0.3	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3886)
Glyco_hydro_10	PF00331.15	gi|257052191|ref|YP_003130024.1|	-	3.7e-95	318.6	0.0	4.2e-95	318.4	0.0	1.0	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	10
Cellulase	PF00150.13	gi|257052191|ref|YP_003130024.1|	-	0.00085	18.6	0.9	0.077	12.1	0.2	2.5	2	1	1	3	3	3	2	Cellulase	(glycosyl	hydrolase	family	5)
Cellulase-like	PF12876.2	gi|257052191|ref|YP_003130024.1|	-	0.0037	17.6	0.1	0.038	14.4	0.0	2.3	2	0	0	2	2	2	1	Sugar-binding	cellulase-like
Epimerase	PF01370.16	gi|257052193|ref|YP_003130026.1|	-	7.4e-37	127.0	0.0	8.7e-37	126.8	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
RmlD_sub_bind	PF04321.12	gi|257052193|ref|YP_003130026.1|	-	4.2e-24	84.9	0.1	5.3e-24	84.5	0.1	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.14	gi|257052193|ref|YP_003130026.1|	-	3.1e-19	68.7	0.0	1.7e-18	66.3	0.0	1.9	1	1	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.10	gi|257052193|ref|YP_003130026.1|	-	1.9e-14	53.2	0.0	1.5e-13	50.2	0.0	2.2	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.7	gi|257052193|ref|YP_003130026.1|	-	3e-12	46.0	0.0	9.9e-09	34.4	0.0	2.2	1	1	1	2	2	2	2	Male	sterility	protein
NAD_binding_10	PF13460.1	gi|257052193|ref|YP_003130026.1|	-	5.8e-08	32.9	0.1	1.4e-07	31.7	0.0	1.6	1	1	0	1	1	1	1	NADH(P)-binding
DapB_N	PF01113.15	gi|257052193|ref|YP_003130026.1|	-	0.0016	18.3	0.1	0.0033	17.3	0.1	1.5	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
Semialdhyde_dh	PF01118.19	gi|257052193|ref|YP_003130026.1|	-	0.0036	17.6	0.0	0.0067	16.7	0.0	1.4	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
Saccharop_dh	PF03435.13	gi|257052193|ref|YP_003130026.1|	-	0.0074	15.3	0.1	0.011	14.7	0.1	1.2	1	0	0	1	1	1	1	Saccharopine	dehydrogenase
Ldh_1_N	PF00056.18	gi|257052193|ref|YP_003130026.1|	-	0.0084	15.9	0.1	0.018	14.8	0.1	1.5	2	0	0	2	2	2	1	lactate/malate	dehydrogenase,	NAD	binding	domain
Epimerase_Csub	PF13950.1	gi|257052193|ref|YP_003130026.1|	-	0.016	15.1	0.0	0.035	14.0	0.0	1.5	1	0	0	1	1	1	0	UDP-glucose	4-epimerase	C-term	subunit
adh_short	PF00106.20	gi|257052193|ref|YP_003130026.1|	-	0.13	12.2	1.6	0.39	10.6	1.1	1.8	1	1	0	1	1	1	0	short	chain	dehydrogenase
Epimerase	PF01370.16	gi|257052194|ref|YP_003130027.1|	-	2.2e-52	177.8	0.0	2.6e-52	177.6	0.0	1.0	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.14	gi|257052194|ref|YP_003130027.1|	-	1.6e-26	92.6	0.0	2.2e-26	92.2	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.12	gi|257052194|ref|YP_003130027.1|	-	1.7e-16	59.9	0.0	2.2e-16	59.6	0.0	1.2	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
NAD_binding_10	PF13460.1	gi|257052194|ref|YP_003130027.1|	-	8.8e-15	55.1	0.5	1.3e-14	54.6	0.3	1.3	1	0	0	1	1	1	1	NADH(P)-binding
Polysacc_synt_2	PF02719.10	gi|257052194|ref|YP_003130027.1|	-	5.9e-13	48.3	0.0	1.6e-12	46.9	0.0	1.7	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.7	gi|257052194|ref|YP_003130027.1|	-	4.2e-10	38.9	0.9	1.7e-08	33.7	0.6	2.1	1	1	0	1	1	1	1	Male	sterility	protein
adh_short	PF00106.20	gi|257052194|ref|YP_003130027.1|	-	3.9e-09	36.6	0.9	3.9e-09	36.6	0.6	1.7	2	0	0	2	2	2	1	short	chain	dehydrogenase
Saccharop_dh	PF03435.13	gi|257052194|ref|YP_003130027.1|	-	2.8e-05	23.2	0.0	4.6e-05	22.5	0.0	1.3	1	0	0	1	1	1	1	Saccharopine	dehydrogenase
KR	PF08659.5	gi|257052194|ref|YP_003130027.1|	-	6.9e-05	22.5	0.3	6.9e-05	22.5	0.2	1.7	2	0	0	2	2	2	1	KR	domain
NmrA	PF05368.8	gi|257052194|ref|YP_003130027.1|	-	0.032	13.4	0.0	0.14	11.4	0.0	2.0	1	1	0	1	1	1	0	NmrA-like	family
Semialdhyde_dh	PF01118.19	gi|257052194|ref|YP_003130027.1|	-	0.04	14.2	0.0	0.1	12.9	0.0	1.8	1	1	0	1	1	1	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
Epimerase	PF01370.16	gi|257052195|ref|YP_003130028.1|	-	3e-20	72.6	0.0	4.9e-20	71.9	0.0	1.3	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
adh_short	PF00106.20	gi|257052195|ref|YP_003130028.1|	-	1.1e-05	25.4	0.1	2.2e-05	24.4	0.1	1.5	1	1	0	1	1	1	1	short	chain	dehydrogenase
Polysacc_synt_2	PF02719.10	gi|257052195|ref|YP_003130028.1|	-	0.00011	21.2	0.1	0.00082	18.3	0.0	2.2	2	1	0	2	2	2	1	Polysaccharide	biosynthesis	protein
RmlD_sub_bind	PF04321.12	gi|257052195|ref|YP_003130028.1|	-	0.0013	17.7	0.1	0.25	10.1	0.1	3.0	2	1	0	2	2	2	1	RmlD	substrate	binding	domain
KR	PF08659.5	gi|257052195|ref|YP_003130028.1|	-	0.0033	17.1	0.0	0.0051	16.4	0.0	1.3	1	0	0	1	1	1	1	KR	domain
3Beta_HSD	PF01073.14	gi|257052195|ref|YP_003130028.1|	-	0.013	14.2	0.2	0.037	12.7	0.0	1.9	2	1	0	2	2	2	0	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_deac_1	PF01522.16	gi|257052197|ref|YP_003130030.1|	-	3.4e-06	26.7	0.0	6.1e-06	25.8	0.0	1.5	1	0	0	1	1	1	1	Polysaccharide	deacetylase
DUF2334	PF10096.4	gi|257052197|ref|YP_003130030.1|	-	0.0016	17.9	0.0	0.0052	16.2	0.0	1.8	2	0	0	2	2	2	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2334)
DUF2194	PF09960.4	gi|257052197|ref|YP_003130030.1|	-	0.12	10.4	0.0	0.16	9.9	0.0	1.1	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2194)
Polysacc_synt_C	PF14667.1	gi|257052198|ref|YP_003130031.1|	-	3.6e-17	62.5	22.0	3.6e-17	62.5	15.2	3.9	2	2	2	4	4	4	1	Polysaccharide	biosynthesis	C-terminal	domain
Polysacc_synt_3	PF13440.1	gi|257052198|ref|YP_003130031.1|	-	6.3e-17	61.8	16.2	6.3e-17	61.8	11.2	2.8	2	1	1	3	3	3	1	Polysaccharide	biosynthesis	protein
Polysacc_synt	PF01943.12	gi|257052198|ref|YP_003130031.1|	-	5.3e-15	55.4	15.4	5.3e-15	55.4	10.7	2.7	2	1	0	2	2	2	1	Polysaccharide	biosynthesis	protein
MVIN	PF03023.9	gi|257052198|ref|YP_003130031.1|	-	3.3e-09	35.6	25.1	3.3e-09	35.6	17.4	1.5	1	1	0	1	1	1	1	MviN-like	protein
Glycos_transf_1	PF00534.15	gi|257052199|ref|YP_003130032.1|	-	4.3e-34	117.4	0.0	7.5e-34	116.6	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|257052199|ref|YP_003130032.1|	-	4.2e-14	52.8	0.0	1.7e-13	50.9	0.0	1.8	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.1	gi|257052199|ref|YP_003130032.1|	-	1.3e-12	47.8	0.0	2.9e-12	46.7	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.1	gi|257052199|ref|YP_003130032.1|	-	5.8e-05	22.8	0.0	0.00011	22.0	0.0	1.4	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Calcyon	PF06387.6	gi|257052199|ref|YP_003130032.1|	-	0.043	13.1	0.6	0.074	12.4	0.4	1.3	1	0	0	1	1	1	0	D1	dopamine	receptor-interacting	protein	(calcyon)
Suppressor_APC	PF11414.3	gi|257052200|ref|YP_003130033.1|	-	0.13	12.0	0.1	0.24	11.2	0.0	1.4	1	0	0	1	1	1	0	Adenomatous	polyposis	coli	tumour	suppressor	protein
Methyltransf_24	PF13578.1	gi|257052201|ref|YP_003130034.1|	-	1.9e-19	70.4	0.1	3.6e-19	69.5	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
CmcI	PF04989.7	gi|257052201|ref|YP_003130034.1|	-	8.7e-05	21.9	0.1	0.037	13.3	0.0	2.4	2	0	0	2	2	2	2	Cephalosporin	hydroxylase
Methyltransf_3	PF01596.12	gi|257052201|ref|YP_003130034.1|	-	0.016	14.2	0.0	0.1	11.6	0.0	2.0	1	1	0	1	1	1	0	O-methyltransferase
Glycos_transf_1	PF00534.15	gi|257052202|ref|YP_003130035.1|	-	1.2e-35	122.4	0.0	2.2e-35	121.6	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|257052202|ref|YP_003130035.1|	-	7.8e-19	68.1	0.0	1.6e-18	67.1	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.1	gi|257052202|ref|YP_003130035.1|	-	1.1e-16	61.0	0.0	7.9e-16	58.2	0.0	1.9	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.1	gi|257052202|ref|YP_003130035.1|	-	3.5e-13	49.9	0.0	5.9e-13	49.2	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.1	gi|257052202|ref|YP_003130035.1|	-	2.3e-05	24.5	0.0	5.5e-05	23.3	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glycos_transf_1	PF00534.15	gi|257052203|ref|YP_003130036.1|	-	5.6e-38	130.0	0.0	8.3e-38	129.4	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|257052203|ref|YP_003130036.1|	-	1.5e-25	89.9	0.2	1.2e-24	86.9	0.1	2.1	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.1	gi|257052203|ref|YP_003130036.1|	-	7.6e-16	58.6	3.2	7.6e-16	58.6	2.2	2.4	2	1	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.1	gi|257052203|ref|YP_003130036.1|	-	1.4e-07	31.6	0.0	2.7e-07	30.7	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.1	gi|257052203|ref|YP_003130036.1|	-	7.4e-06	25.7	0.0	2e-05	24.3	0.0	1.7	1	1	0	1	1	1	1	Glycosyltransferase	Family	4
TrkA_C	PF02080.16	gi|257052203|ref|YP_003130036.1|	-	0.045	13.3	0.0	0.12	12.0	0.0	1.7	1	0	0	1	1	1	0	TrkA-C	domain
PMT_2	PF13231.1	gi|257052204|ref|YP_003130037.1|	-	4.2e-08	33.2	11.2	4.2e-08	33.2	7.8	3.1	3	0	0	3	3	3	2	Dolichyl-phosphate-mannose-protein	mannosyltransferase
Glycos_transf_1	PF00534.15	gi|257052206|ref|YP_003130039.1|	-	1.3e-25	89.8	0.0	1.9e-25	89.2	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.1	gi|257052206|ref|YP_003130039.1|	-	1.4e-22	80.5	1.2	1.4e-22	80.5	0.8	2.1	3	0	0	3	3	3	1	Glycosyl	transferase	4-like	domain
Glyco_transf_4	PF13439.1	gi|257052206|ref|YP_003130039.1|	-	1.6e-19	70.2	0.2	2.6e-19	69.6	0.1	1.3	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_1_4	PF13692.1	gi|257052206|ref|YP_003130039.1|	-	1.8e-17	63.7	0.1	5e-17	62.3	0.0	1.7	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_4_2	PF13477.1	gi|257052206|ref|YP_003130039.1|	-	9.1e-07	28.7	0.0	1.5e-06	28.0	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	4-like
Glyco_trans_1_2	PF13524.1	gi|257052206|ref|YP_003130039.1|	-	0.0082	16.3	0.0	0.018	15.3	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glycos_transf_N	PF04413.11	gi|257052206|ref|YP_003130039.1|	-	0.017	14.2	0.0	0.033	13.3	0.0	1.4	1	0	0	1	1	1	0	3-Deoxy-D-manno-octulosonic-acid	transferase	(kdotransferase)
SWIM	PF04434.12	gi|257052207|ref|YP_003130040.1|	-	5.9e-06	25.6	0.1	1.3e-05	24.5	0.1	1.6	1	0	0	1	1	1	1	SWIM	zinc	finger
DUF2267	PF10025.4	gi|257052207|ref|YP_003130040.1|	-	0.017	15.1	3.8	0.052	13.6	2.4	2.1	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2267)
SAM_adeno_trans	PF01887.11	gi|257052207|ref|YP_003130040.1|	-	0.11	11.5	0.0	0.17	10.9	0.0	1.3	1	0	0	1	1	1	0	S-adenosyl-l-methionine	hydroxide	adenosyltransferase
Scm3	PF10384.4	gi|257052207|ref|YP_003130040.1|	-	0.11	11.9	0.6	0.55	9.7	0.1	2.3	2	0	0	2	2	2	0	Centromere	protein	Scm3
RtcB	PF01139.12	gi|257052208|ref|YP_003130041.1|	-	2.9e-104	349.4	0.0	3.6e-104	349.1	0.0	1.1	1	0	0	1	1	1	1	tRNA-splicing	ligase	RtcB
Acetyltransf_4	PF13420.1	gi|257052209|ref|YP_003130042.1|	-	2.9e-28	98.7	0.0	3.4e-28	98.5	0.0	1.0	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.19	gi|257052209|ref|YP_003130042.1|	-	2.5e-09	37.0	0.0	3.6e-09	36.5	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_3	PF13302.1	gi|257052209|ref|YP_003130042.1|	-	4.8e-07	30.0	0.0	6.9e-07	29.5	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.1	gi|257052209|ref|YP_003130042.1|	-	5.6e-06	26.4	0.0	7.9e-06	25.9	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.1	gi|257052209|ref|YP_003130042.1|	-	0.00035	20.4	0.0	0.00044	20.1	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|257052209|ref|YP_003130042.1|	-	0.00062	19.4	0.0	0.0012	18.5	0.0	1.5	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_7	PF13508.1	gi|257052209|ref|YP_003130042.1|	-	0.062	13.4	0.0	0.091	12.9	0.0	1.3	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
IFRD	PF05004.8	gi|257052209|ref|YP_003130042.1|	-	0.12	11.3	0.0	0.16	11.0	0.0	1.1	1	0	0	1	1	1	0	Interferon-related	developmental	regulator	(IFRD)
MarR_2	PF12802.2	gi|257052210|ref|YP_003130043.1|	-	4.9e-07	29.3	0.0	9.7e-07	28.3	0.0	1.5	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.17	gi|257052210|ref|YP_003130043.1|	-	1.4e-06	27.9	0.0	2.3e-06	27.2	0.0	1.3	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.14	gi|257052210|ref|YP_003130043.1|	-	0.0013	18.4	0.1	0.002	17.8	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.1	gi|257052210|ref|YP_003130043.1|	-	0.0016	17.7	0.0	0.0029	16.9	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Penicillinase_R	PF03965.11	gi|257052210|ref|YP_003130043.1|	-	0.0095	16.0	0.0	0.016	15.3	0.0	1.3	1	0	0	1	1	1	1	Penicillinase	repressor
Sigma70_r4	PF04545.11	gi|257052210|ref|YP_003130043.1|	-	0.017	14.4	0.0	0.032	13.5	0.0	1.4	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_27	PF13463.1	gi|257052210|ref|YP_003130043.1|	-	0.04	14.2	0.0	0.064	13.5	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
RPA_C	PF08784.6	gi|257052210|ref|YP_003130043.1|	-	0.084	13.3	0.7	0.17	12.3	0.0	1.9	2	1	0	2	2	2	0	Replication	protein	A	C	terminal
SHOCT	PF09851.4	gi|257052212|ref|YP_003130045.1|	-	1.5e-10	40.1	0.6	2.1e-10	39.6	0.4	1.2	1	0	0	1	1	1	1	Short	C-terminal	domain
DUF1707	PF08044.6	gi|257052212|ref|YP_003130045.1|	-	0.00018	21.2	2.7	0.00027	20.6	1.9	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1707)
HTH_11	PF08279.7	gi|257052214|ref|YP_003130047.1|	-	0.00042	19.9	1.0	0.18	11.4	0.0	2.6	3	0	0	3	3	3	2	HTH	domain
HTH_24	PF13412.1	gi|257052214|ref|YP_003130047.1|	-	0.00078	18.7	1.1	0.028	13.7	0.0	2.6	3	0	0	3	3	3	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.2	gi|257052214|ref|YP_003130047.1|	-	0.0021	17.7	0.1	0.0021	17.7	0.1	2.6	3	0	0	3	3	3	1	Helix-turn-helix	domain
TrmB	PF01978.14	gi|257052214|ref|YP_003130047.1|	-	0.0022	17.6	0.0	0.0044	16.6	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.5	gi|257052214|ref|YP_003130047.1|	-	0.015	14.9	0.0	0.04	13.5	0.0	1.8	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_27	PF13463.1	gi|257052214|ref|YP_003130047.1|	-	0.024	14.9	0.1	0.19	12.0	0.0	2.3	2	1	0	2	2	2	0	Winged	helix	DNA-binding	domain
HTH_23	PF13384.1	gi|257052214|ref|YP_003130047.1|	-	0.029	14.0	3.0	0.041	13.5	0.0	2.5	2	0	0	2	2	2	0	Homeodomain-like	domain
HTH_29	PF13551.1	gi|257052214|ref|YP_003130047.1|	-	0.06	13.4	4.0	0.076	13.1	0.3	2.2	2	0	0	2	2	2	0	Winged	helix-turn	helix
HTH_DeoR	PF08220.7	gi|257052214|ref|YP_003130047.1|	-	0.092	12.2	0.1	5.1	6.7	0.0	2.5	2	0	0	2	2	2	0	DeoR-like	helix-turn-helix	domain
DUF1192	PF06698.6	gi|257052214|ref|YP_003130047.1|	-	0.11	12.3	2.3	0.2	11.4	0.1	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1192)
MarR_2	PF12802.2	gi|257052214|ref|YP_003130047.1|	-	0.14	11.8	0.2	0.14	11.8	0.2	2.4	2	1	1	3	3	3	0	MarR	family
HTH_AsnC-type	PF13404.1	gi|257052214|ref|YP_003130047.1|	-	2.6	7.6	12.8	1.4	8.4	0.2	3.3	3	0	0	3	3	3	0	AsnC-type	helix-turn-helix	domain
Epimerase	PF01370.16	gi|257052215|ref|YP_003130048.1|	-	9.7e-65	218.2	0.2	1.2e-64	217.9	0.1	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.14	gi|257052215|ref|YP_003130048.1|	-	9e-26	90.2	0.0	1.2e-25	89.8	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.12	gi|257052215|ref|YP_003130048.1|	-	2.3e-21	75.9	0.3	3e-21	75.5	0.2	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Polysacc_synt_2	PF02719.10	gi|257052215|ref|YP_003130048.1|	-	3.5e-17	62.2	0.0	1.9e-16	59.7	0.0	1.8	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_10	PF13460.1	gi|257052215|ref|YP_003130048.1|	-	1.2e-13	51.4	1.4	1.6e-12	47.7	1.0	2.1	1	1	0	1	1	1	1	NADH(P)-binding
NAD_binding_4	PF07993.7	gi|257052215|ref|YP_003130048.1|	-	9.7e-12	44.3	0.0	2.9e-11	42.7	0.0	1.8	1	1	0	1	1	1	1	Male	sterility	protein
adh_short	PF00106.20	gi|257052215|ref|YP_003130048.1|	-	4.7e-11	42.8	2.1	6.7e-11	42.3	0.1	2.1	2	0	0	2	2	2	1	short	chain	dehydrogenase
NmrA	PF05368.8	gi|257052215|ref|YP_003130048.1|	-	6.5e-07	28.8	0.0	1.3e-06	27.8	0.0	1.5	1	0	0	1	1	1	1	NmrA-like	family
KR	PF08659.5	gi|257052215|ref|YP_003130048.1|	-	3.6e-06	26.7	0.5	2.3e-05	24.1	0.0	2.4	2	1	0	2	2	2	1	KR	domain
Epimerase_Csub	PF13950.1	gi|257052215|ref|YP_003130048.1|	-	0.0011	18.8	0.1	0.0027	17.5	0.1	1.7	1	0	0	1	1	1	1	UDP-glucose	4-epimerase	C-term	subunit
3HCDH_N	PF02737.13	gi|257052215|ref|YP_003130048.1|	-	0.0056	16.3	0.2	0.024	14.2	0.1	2.0	1	1	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
F420_oxidored	PF03807.12	gi|257052215|ref|YP_003130048.1|	-	0.02	15.2	0.1	0.086	13.2	0.0	2.1	2	1	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
TrkA_N	PF02254.13	gi|257052215|ref|YP_003130048.1|	-	0.025	14.5	1.1	0.18	11.8	0.1	2.8	3	1	0	3	3	3	0	TrkA-N	domain
NTP_transferase	PF00483.18	gi|257052216|ref|YP_003130049.1|	-	5.2e-44	150.4	0.0	5.7e-44	150.2	0.0	1.0	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.2	gi|257052216|ref|YP_003130049.1|	-	1.9e-16	60.5	0.0	2.2e-16	60.3	0.0	1.1	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.14	gi|257052216|ref|YP_003130049.1|	-	3.6e-07	29.9	0.0	2.6e-06	27.1	0.0	2.1	2	0	0	2	2	2	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Glycos_transf_2	PF00535.21	gi|257052216|ref|YP_003130049.1|	-	0.087	12.5	0.0	0.11	12.1	0.0	1.3	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
UDPG_MGDP_dh_N	PF03721.9	gi|257052217|ref|YP_003130050.1|	-	5.7e-56	188.8	0.4	6.3e-55	185.4	0.1	2.1	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
UDPG_MGDP_dh	PF00984.14	gi|257052217|ref|YP_003130050.1|	-	4.8e-34	116.4	0.0	1.6e-33	114.7	0.0	1.9	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	central	domain
UDPG_MGDP_dh_C	PF03720.10	gi|257052217|ref|YP_003130050.1|	-	7.6e-28	96.7	0.0	5.3e-27	94.0	0.0	2.3	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
NAD_Gly3P_dh_N	PF01210.18	gi|257052217|ref|YP_003130050.1|	-	2.2e-07	30.7	0.1	6.5e-07	29.2	0.1	1.9	1	1	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
3HCDH_N	PF02737.13	gi|257052217|ref|YP_003130050.1|	-	1.1e-06	28.4	0.2	2.8e-06	27.0	0.1	1.7	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
F420_oxidored	PF03807.12	gi|257052217|ref|YP_003130050.1|	-	1.5e-05	25.2	0.3	0.3	11.5	0.0	3.9	3	1	0	3	3	3	1	NADP	oxidoreductase	coenzyme	F420-dependent
Pyr_redox	PF00070.22	gi|257052217|ref|YP_003130050.1|	-	7.4e-05	23.0	0.4	0.00054	20.3	0.1	2.4	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
AlaDh_PNT_C	PF01262.16	gi|257052217|ref|YP_003130050.1|	-	0.0016	18.0	0.1	0.0034	16.9	0.1	1.6	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
ApbA	PF02558.11	gi|257052217|ref|YP_003130050.1|	-	0.0049	16.3	0.0	0.0089	15.4	0.0	1.4	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
DAO	PF01266.19	gi|257052217|ref|YP_003130050.1|	-	0.014	14.3	0.7	0.029	13.2	0.5	1.5	1	0	0	1	1	1	0	FAD	dependent	oxidoreductase
NAD_binding_2	PF03446.10	gi|257052217|ref|YP_003130050.1|	-	0.023	14.5	0.3	0.15	11.9	0.1	2.5	2	1	1	3	3	3	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
TrkA_N	PF02254.13	gi|257052217|ref|YP_003130050.1|	-	0.038	13.9	2.7	0.37	10.8	0.1	3.2	3	1	0	3	3	3	0	TrkA-N	domain
Semialdhyde_dh	PF01118.19	gi|257052217|ref|YP_003130050.1|	-	0.052	13.8	2.2	0.65	10.3	0.1	3.3	3	1	0	3	3	3	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
NAD_binding_11	PF14833.1	gi|257052217|ref|YP_003130050.1|	-	0.066	13.2	0.3	0.23	11.5	0.1	1.9	2	0	0	2	2	2	0	NAD-binding	of	NADP-dependent	3-hydroxyisobutyrate	dehydrogenase
DUF433	PF04255.9	gi|257052218|ref|YP_003130051.1|	-	1e-11	44.0	0.3	1.5e-11	43.5	0.2	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF433)
DUF77	PF01910.12	gi|257052220|ref|YP_003130053.1|	-	2.4e-20	71.9	0.2	2.9e-20	71.7	0.1	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF77
LacI	PF00356.16	gi|257052220|ref|YP_003130053.1|	-	0.068	12.8	0.1	0.3	10.7	0.0	1.9	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	lacI	family
MCH	PF02289.11	gi|257052221|ref|YP_003130054.1|	-	3.8e-80	269.2	0.2	4.3e-80	269.0	0.1	1.0	1	0	0	1	1	1	1	Cyclohydrolase	(MCH)
Methyltransf_11	PF08241.7	gi|257052222|ref|YP_003130055.1|	-	8e-21	74.3	0.1	1.7e-20	73.3	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|257052222|ref|YP_003130055.1|	-	4.9e-20	71.6	0.0	7.8e-20	71.0	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|257052222|ref|YP_003130055.1|	-	1.3e-18	67.2	0.0	2.1e-18	66.5	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|257052222|ref|YP_003130055.1|	-	1.5e-18	67.4	0.6	6.2e-18	65.4	0.1	2.0	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|257052222|ref|YP_003130055.1|	-	2.8e-18	66.1	0.0	5.9e-18	65.1	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|257052222|ref|YP_003130055.1|	-	1.5e-12	47.7	0.1	3.8e-12	46.4	0.0	1.7	2	0	0	2	2	2	1	Methyltransferase	domain
MTS	PF05175.9	gi|257052222|ref|YP_003130055.1|	-	1.9e-11	43.6	0.0	3.7e-11	42.6	0.0	1.5	2	0	0	2	2	1	1	Methyltransferase	small	domain
Methyltransf_26	PF13659.1	gi|257052222|ref|YP_003130055.1|	-	4e-11	42.9	1.0	6.1e-10	39.1	0.7	2.2	1	1	0	1	1	1	1	Methyltransferase	domain
CMAS	PF02353.15	gi|257052222|ref|YP_003130055.1|	-	4.4e-07	29.2	0.0	6.4e-07	28.7	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
NodS	PF05401.6	gi|257052222|ref|YP_003130055.1|	-	3.3e-06	26.6	0.0	4.8e-06	26.0	0.0	1.2	1	0	0	1	1	1	1	Nodulation	protein	S	(NodS)
PCMT	PF01135.14	gi|257052222|ref|YP_003130055.1|	-	5.2e-06	26.1	0.0	7.1e-06	25.7	0.0	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Ubie_methyltran	PF01209.13	gi|257052222|ref|YP_003130055.1|	-	1.6e-05	24.1	0.0	2.5e-05	23.5	0.0	1.3	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
DREV	PF05219.7	gi|257052222|ref|YP_003130055.1|	-	3.2e-05	22.9	0.0	4.6e-05	22.4	0.0	1.1	1	0	0	1	1	1	1	DREV	methyltransferase
Methyltransf_9	PF08003.6	gi|257052222|ref|YP_003130055.1|	-	6e-05	21.8	0.0	7.5e-05	21.5	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
UPF0020	PF01170.13	gi|257052222|ref|YP_003130055.1|	-	6.7e-05	22.5	0.1	0.0005	19.6	0.0	2.2	2	1	1	3	3	3	1	Putative	RNA	methylase	family	UPF0020
Methyltransf_32	PF13679.1	gi|257052222|ref|YP_003130055.1|	-	0.00013	21.7	0.0	0.0002	21.0	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
RrnaAD	PF00398.15	gi|257052222|ref|YP_003130055.1|	-	0.00042	19.4	0.0	0.00061	18.8	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_4	PF02390.12	gi|257052222|ref|YP_003130055.1|	-	0.00053	19.0	0.0	0.0011	17.9	0.0	1.6	1	1	0	1	1	1	1	Putative	methyltransferase
TPMT	PF05724.6	gi|257052222|ref|YP_003130055.1|	-	0.00096	18.6	0.0	0.0015	18.0	0.0	1.4	1	0	0	1	1	1	1	Thiopurine	S-methyltransferase	(TPMT)
MetW	PF07021.7	gi|257052222|ref|YP_003130055.1|	-	0.00098	18.5	0.0	0.0015	17.9	0.0	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
PrmA	PF06325.8	gi|257052222|ref|YP_003130055.1|	-	0.006	15.7	0.1	0.0085	15.2	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
CheR	PF01739.13	gi|257052222|ref|YP_003130055.1|	-	0.0076	15.5	0.3	12	5.1	0.0	3.3	2	1	1	3	3	3	0	CheR	methyltransferase,	SAM	binding	domain
DUF2510	PF10708.4	gi|257052222|ref|YP_003130055.1|	-	0.041	13.3	0.0	0.096	12.1	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2510)
FmrO	PF07091.6	gi|257052222|ref|YP_003130055.1|	-	0.049	12.6	0.0	0.069	12.1	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	RNA	methyltransferase	(FmrO)
Methyltransf_2	PF00891.13	gi|257052222|ref|YP_003130055.1|	-	0.054	12.6	0.0	0.079	12.1	0.0	1.2	1	0	0	1	1	1	0	O-methyltransferase
DUF3885	PF13021.1	gi|257052222|ref|YP_003130055.1|	-	0.095	12.4	0.3	1.4	8.7	0.0	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3885)
TehB	PF03848.9	gi|257052222|ref|YP_003130055.1|	-	0.13	11.4	0.0	0.18	10.9	0.0	1.2	1	0	0	1	1	1	0	Tellurite	resistance	protein	TehB
HAD_2	PF13419.1	gi|257052223|ref|YP_003130056.1|	-	3.1e-33	115.4	0.1	3.6e-33	115.2	0.1	1.0	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.21	gi|257052223|ref|YP_003130056.1|	-	1.5e-11	45.1	0.0	2.7e-10	41.0	0.0	2.0	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|257052223|ref|YP_003130056.1|	-	7.9e-10	38.3	0.4	3.3e-09	36.3	0.1	2.1	1	1	1	2	2	2	1	HAD-hyrolase-like
HAD	PF12710.2	gi|257052223|ref|YP_003130056.1|	-	0.001	19.2	0.0	0.0012	19.0	0.0	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Aldolase_II	PF00596.16	gi|257052225|ref|YP_003130058.1|	-	7.4e-46	156.0	0.0	8.5e-46	155.8	0.0	1.0	1	0	0	1	1	1	1	Class	II	Aldolase	and	Adducin	N-terminal	domain
FGGY_N	PF00370.16	gi|257052226|ref|YP_003130059.1|	-	2.2e-65	220.4	0.0	3e-65	219.9	0.0	1.2	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	N-terminal	domain
FGGY_C	PF02782.11	gi|257052226|ref|YP_003130059.1|	-	1.9e-33	115.7	0.0	2.7e-33	115.2	0.0	1.2	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	C-terminal	domain
BcrAD_BadFG	PF01869.15	gi|257052226|ref|YP_003130059.1|	-	0.00044	19.6	0.0	0.00093	18.5	0.0	1.5	1	0	0	1	1	1	1	BadF/BadG/BcrA/BcrD	ATPase	family
DUF1680	PF07944.7	gi|257052227|ref|YP_003130060.1|	-	6.1e-163	542.8	0.0	7.5e-163	542.5	0.0	1.1	1	0	0	1	1	1	1	Putative	glycosyl	hydrolase	of	unknown	function	(DUF1680)
Alpha-L-AF_C	PF06964.7	gi|257052228|ref|YP_003130061.1|	-	1.7e-32	112.6	1.1	2.2e-32	112.2	0.8	1.2	1	0	0	1	1	1	1	Alpha-L-arabinofuranosidase	C-terminus
Glyco_hydro_97	PF10566.4	gi|257052229|ref|YP_003130062.1|	-	1.3e-82	276.9	0.4	1.6e-82	276.6	0.3	1.1	1	0	0	1	1	1	1	Glycoside	hydrolase	97
GH97_N	PF14508.1	gi|257052229|ref|YP_003130062.1|	-	5.5e-46	156.6	0.0	7.8e-46	156.1	0.0	1.2	1	0	0	1	1	1	1	Glycosyl-hydrolase	97	N-terminal
GH97_C	PF14509.1	gi|257052229|ref|YP_003130062.1|	-	4.4e-18	65.2	0.0	3.4e-17	62.4	0.0	2.4	2	0	0	2	2	2	1	Glycosyl-hydrolase	97	C-terminal,	oligomerisation
Arabinose_Isome	PF02610.10	gi|257052230|ref|YP_003130063.1|	-	6.1e-172	571.4	0.0	8e-172	571.1	0.0	1.1	1	0	0	1	1	1	1	L-arabinose	isomerase
Arabinose_Iso_C	PF11762.3	gi|257052230|ref|YP_003130063.1|	-	5.6e-50	167.7	0.0	1.4e-49	166.4	0.0	1.7	2	0	0	2	2	2	1	L-arabinose	isomerase	C-terminal	domain
GTP_EFTU	PF00009.22	gi|257052231|ref|YP_003130064.1|	-	1.6e-34	118.9	0.0	2.5e-34	118.3	0.0	1.2	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
GTP_EFTU_D3	PF03143.12	gi|257052231|ref|YP_003130064.1|	-	2.2e-16	59.8	0.0	4.8e-16	58.7	0.0	1.6	1	0	0	1	1	1	1	Elongation	factor	Tu	C-terminal	domain
GTP_EFTU_D2	PF03144.20	gi|257052231|ref|YP_003130064.1|	-	2.2e-08	34.1	0.6	6.9e-08	32.5	0.4	2.0	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	2
ATP_bind_1	PF03029.12	gi|257052231|ref|YP_003130064.1|	-	0.0039	16.7	0.2	0.032	13.7	0.0	2.0	2	0	0	2	2	2	1	Conserved	hypothetical	ATP	binding	protein
MMR_HSR1	PF01926.18	gi|257052231|ref|YP_003130064.1|	-	0.028	14.3	0.0	0.057	13.3	0.0	1.5	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
Hydrolase_3	PF08282.7	gi|257052232|ref|YP_003130065.1|	-	2.3e-25	89.6	0.1	1.1e-16	61.1	0.1	2.0	2	0	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
S6PP	PF05116.8	gi|257052232|ref|YP_003130065.1|	-	1.1e-06	28.1	0.0	3.1e-05	23.4	0.0	2.1	2	0	0	2	2	2	1	Sucrose-6F-phosphate	phosphohydrolase
Hydrolase	PF00702.21	gi|257052232|ref|YP_003130065.1|	-	1.6e-06	28.6	1.3	0.00018	21.9	0.9	2.5	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.2	gi|257052232|ref|YP_003130065.1|	-	0.00012	22.2	2.7	0.019	15.1	0.0	2.7	1	1	1	2	2	2	2	haloacid	dehalogenase-like	hydrolase
HAD_2	PF13419.1	gi|257052232|ref|YP_003130065.1|	-	0.01	16.0	0.3	0.082	13.1	0.2	2.3	1	1	0	1	1	1	0	Haloacid	dehalogenase-like	hydrolase
DUF389	PF04087.9	gi|257052233|ref|YP_003130066.1|	-	1.8e-34	118.6	18.3	1.8e-34	118.6	12.7	2.2	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF389)
RTA1	PF04479.8	gi|257052233|ref|YP_003130066.1|	-	8.4	5.7	8.2	2.6	7.4	0.9	2.2	2	0	0	2	2	2	0	RTA1	like	protein
SIMPL	PF04402.9	gi|257052234|ref|YP_003130067.1|	-	7.1e-41	140.3	11.3	8.5e-41	140.1	7.8	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF541)
DUF2771	PF10969.3	gi|257052234|ref|YP_003130067.1|	-	0.034	13.4	5.0	0.13	11.5	3.1	2.1	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2771)
Jag_N	PF14804.1	gi|257052234|ref|YP_003130067.1|	-	0.089	12.8	0.1	0.54	10.3	0.0	2.3	2	0	0	2	2	2	0	Jag	N-terminus
DUF2077	PF09850.4	gi|257052234|ref|YP_003130067.1|	-	0.094	12.1	0.2	0.094	12.1	0.1	1.9	3	0	0	3	3	3	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2077)
MMR_HSR1	PF01926.18	gi|257052235|ref|YP_003130068.1|	-	4.3e-19	68.5	0.0	9e-19	67.5	0.0	1.5	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
NOG1	PF06858.9	gi|257052235|ref|YP_003130068.1|	-	1.6e-18	66.2	0.0	3.2e-18	65.3	0.0	1.5	1	0	0	1	1	1	1	Nucleolar	GTP-binding	protein	1	(NOG1)
FeoB_N	PF02421.13	gi|257052235|ref|YP_003130068.1|	-	2.2e-11	43.3	0.0	3.6e-11	42.5	0.0	1.3	1	0	0	1	1	1	1	Ferrous	iron	transport	protein	B
Miro	PF08477.8	gi|257052235|ref|YP_003130068.1|	-	6.6e-05	23.3	0.0	0.00011	22.6	0.0	1.4	1	0	0	1	1	1	1	Miro-like	protein
Dynamin_N	PF00350.18	gi|257052235|ref|YP_003130068.1|	-	0.00032	20.5	0.1	0.59	9.9	0.0	2.6	2	1	1	3	3	3	2	Dynamin	family
AIG1	PF04548.11	gi|257052235|ref|YP_003130068.1|	-	0.0016	17.5	0.0	0.0025	16.9	0.0	1.3	1	0	0	1	1	1	1	AIG1	family
GTP_EFTU	PF00009.22	gi|257052235|ref|YP_003130068.1|	-	0.0048	16.3	0.1	0.061	12.7	0.0	2.5	1	1	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
AAA_16	PF13191.1	gi|257052235|ref|YP_003130068.1|	-	0.007	16.3	0.3	0.062	13.2	0.0	2.3	1	1	1	2	2	2	1	AAA	ATPase	domain
DUF258	PF03193.11	gi|257052235|ref|YP_003130068.1|	-	0.016	14.4	0.0	0.069	12.3	0.0	1.9	1	1	0	1	1	1	0	Protein	of	unknown	function,	DUF258
WEMBL	PF05701.6	gi|257052235|ref|YP_003130068.1|	-	0.042	12.3	0.1	0.074	11.5	0.1	1.3	1	0	0	1	1	1	0	Weak	chloroplast	movement	under	blue	light
Phage_lysis	PF03245.8	gi|257052235|ref|YP_003130068.1|	-	0.056	13.4	1.7	0.2	11.6	1.2	1.9	1	1	0	1	1	1	0	Bacteriophage	Rz	lysis	protein
AAA_17	PF13207.1	gi|257052235|ref|YP_003130068.1|	-	0.062	14.1	0.4	1.6	9.5	0.0	2.4	2	1	0	2	2	2	0	AAA	domain
SRPRB	PF09439.5	gi|257052235|ref|YP_003130068.1|	-	0.085	12.0	0.0	1.6	7.9	0.0	2.5	2	1	0	2	2	2	0	Signal	recognition	particle	receptor	beta	subunit
KTI12	PF08433.5	gi|257052235|ref|YP_003130068.1|	-	0.097	11.8	0.0	0.18	10.9	0.0	1.4	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
Ras	PF00071.17	gi|257052235|ref|YP_003130068.1|	-	0.12	11.7	0.0	0.37	10.1	0.0	1.8	1	1	0	1	1	1	0	Ras	family
PPV_E1_C	PF00519.12	gi|257052235|ref|YP_003130068.1|	-	0.14	10.7	0.0	0.2	10.2	0.0	1.2	1	0	0	1	1	1	0	Papillomavirus	helicase
FUSC	PF04632.7	gi|257052235|ref|YP_003130068.1|	-	0.16	10.3	1.1	0.23	9.8	0.8	1.2	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
AAA	PF00004.24	gi|257052236|ref|YP_003130069.1|	-	3.7e-44	150.1	0.9	6.1e-44	149.4	0.1	1.8	2	0	0	2	2	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_2	PF07724.9	gi|257052236|ref|YP_003130069.1|	-	3.5e-08	33.5	0.0	1e-07	32.0	0.0	1.8	1	0	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
RuvB_N	PF05496.7	gi|257052236|ref|YP_003130069.1|	-	4.5e-07	29.1	0.6	8.5e-07	28.2	0.0	1.7	3	0	0	3	3	1	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_5	PF07728.9	gi|257052236|ref|YP_003130069.1|	-	6.1e-07	29.2	1.7	3.9e-06	26.6	0.1	2.8	2	1	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA_22	PF13401.1	gi|257052236|ref|YP_003130069.1|	-	9e-07	29.1	2.2	3.2e-05	24.0	0.2	2.8	2	1	0	2	2	2	1	AAA	domain
AAA_16	PF13191.1	gi|257052236|ref|YP_003130069.1|	-	4.2e-06	26.8	5.2	5e-05	23.3	0.1	3.5	2	2	0	2	2	2	1	AAA	ATPase	domain
AAA_17	PF13207.1	gi|257052236|ref|YP_003130069.1|	-	9.6e-06	26.4	0.1	4.3e-05	24.3	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_33	PF13671.1	gi|257052236|ref|YP_003130069.1|	-	0.00016	21.5	0.1	0.00079	19.3	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
DUF904	PF06005.7	gi|257052236|ref|YP_003130069.1|	-	0.00019	21.6	1.4	0.0019	18.4	1.3	2.2	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF904)
DUF815	PF05673.8	gi|257052236|ref|YP_003130069.1|	-	0.00022	20.2	0.2	0.00048	19.1	0.0	1.7	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF815)
AAA_14	PF13173.1	gi|257052236|ref|YP_003130069.1|	-	0.00031	20.6	0.0	0.00062	19.6	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_19	PF13245.1	gi|257052236|ref|YP_003130069.1|	-	0.00034	20.3	0.1	0.00096	18.8	0.1	1.7	1	0	0	1	1	1	1	Part	of	AAA	domain
NACHT	PF05729.7	gi|257052236|ref|YP_003130069.1|	-	0.00059	19.5	0.3	0.021	14.4	0.0	2.4	1	1	1	2	2	2	1	NACHT	domain
TIP49	PF06068.8	gi|257052236|ref|YP_003130069.1|	-	0.00073	18.3	0.0	0.0017	17.1	0.0	1.6	1	0	0	1	1	1	1	TIP49	C-terminus
AAA_28	PF13521.1	gi|257052236|ref|YP_003130069.1|	-	0.00081	19.3	0.5	0.0033	17.3	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
IstB_IS21	PF01695.12	gi|257052236|ref|YP_003130069.1|	-	0.0015	17.9	0.0	0.004	16.5	0.0	1.7	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_18	PF13238.1	gi|257052236|ref|YP_003130069.1|	-	0.0016	18.7	0.1	0.016	15.5	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
NTPase_1	PF03266.10	gi|257052236|ref|YP_003130069.1|	-	0.0017	18.1	1.1	0.51	10.0	0.2	3.2	2	1	1	3	3	3	1	NTPase
Sigma54_activat	PF00158.21	gi|257052236|ref|YP_003130069.1|	-	0.0018	17.7	0.1	0.027	13.9	0.1	2.5	1	1	0	1	1	1	1	Sigma-54	interaction	domain
Mg_chelatase	PF01078.16	gi|257052236|ref|YP_003130069.1|	-	0.0023	17.1	0.0	0.0044	16.2	0.0	1.4	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
AAA_3	PF07726.6	gi|257052236|ref|YP_003130069.1|	-	0.0058	16.2	0.2	0.023	14.2	0.0	2.1	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Zeta_toxin	PF06414.7	gi|257052236|ref|YP_003130069.1|	-	0.0067	15.5	0.2	0.015	14.4	0.0	1.7	2	0	0	2	2	2	1	Zeta	toxin
Sigma54_activ_2	PF14532.1	gi|257052236|ref|YP_003130069.1|	-	0.0079	16.2	0.2	0.032	14.2	0.0	2.1	2	1	0	2	2	2	1	Sigma-54	interaction	domain
CPT	PF07931.7	gi|257052236|ref|YP_003130069.1|	-	0.01	15.4	0.0	0.022	14.3	0.0	1.6	1	0	0	1	1	1	0	Chloramphenicol	phosphotransferase-like	protein
ApoO	PF09769.4	gi|257052236|ref|YP_003130069.1|	-	0.012	15.3	0.2	5.6	6.6	0.1	2.3	2	0	0	2	2	2	0	Apolipoprotein	O
NB-ARC	PF00931.17	gi|257052236|ref|YP_003130069.1|	-	0.017	14.0	0.1	0.053	12.3	0.0	1.8	2	0	0	2	2	2	0	NB-ARC	domain
RNA_helicase	PF00910.17	gi|257052236|ref|YP_003130069.1|	-	0.026	14.7	0.0	0.062	13.4	0.0	1.7	2	0	0	2	2	1	0	RNA	helicase
AAA_11	PF13086.1	gi|257052236|ref|YP_003130069.1|	-	0.028	13.9	0.1	0.096	12.2	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
Torsin	PF06309.6	gi|257052236|ref|YP_003130069.1|	-	0.039	13.8	0.0	0.083	12.7	0.0	1.4	1	0	0	1	1	1	0	Torsin
PhoH	PF02562.11	gi|257052236|ref|YP_003130069.1|	-	0.052	12.7	0.0	0.11	11.6	0.0	1.6	1	0	0	1	1	1	0	PhoH-like	protein
ABC_tran	PF00005.22	gi|257052236|ref|YP_003130069.1|	-	0.094	13.0	0.2	0.37	11.1	0.0	2.2	3	0	0	3	3	2	0	ABC	transporter
KaiC	PF06745.8	gi|257052236|ref|YP_003130069.1|	-	0.095	11.7	3.1	0.61	9.1	0.0	3.0	2	1	1	3	3	3	0	KaiC
Parvo_NS1	PF01057.12	gi|257052236|ref|YP_003130069.1|	-	0.12	11.2	0.0	0.23	10.3	0.0	1.4	1	0	0	1	1	1	0	Parvovirus	non-structural	protein	NS1
AAA_25	PF13481.1	gi|257052236|ref|YP_003130069.1|	-	0.16	11.3	9.6	0.25	10.7	0.1	3.4	2	1	1	4	4	3	0	AAA	domain
ADIP	PF11559.3	gi|257052236|ref|YP_003130069.1|	-	0.16	11.8	2.9	0.31	10.9	2.0	1.4	1	0	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
AAA_24	PF13479.1	gi|257052236|ref|YP_003130069.1|	-	0.19	11.2	1.9	0.34	10.4	0.1	2.3	2	2	1	3	3	3	0	AAA	domain
AAA_23	PF13476.1	gi|257052236|ref|YP_003130069.1|	-	0.19	12.0	0.4	4.5	7.5	0.0	2.5	3	0	0	3	3	2	0	AAA	domain
Peptidase_M3	PF01432.15	gi|257052237|ref|YP_003130070.1|	-	1.1e-67	229.0	1.4	1.6e-67	228.5	0.8	1.4	2	0	0	2	2	2	1	Peptidase	family	M3
Peptidase_M3_N	PF08439.5	gi|257052237|ref|YP_003130070.1|	-	3.5e-24	84.6	0.4	7.3e-23	80.4	0.1	3.4	3	0	0	3	3	3	1	Oligopeptidase	F
Peptidase_MA_2	PF13485.1	gi|257052237|ref|YP_003130070.1|	-	0.002	18.1	0.8	0.0076	16.2	0.6	2.1	1	0	0	1	1	1	1	Peptidase	MA	superfamily
DUF3038	PF11237.3	gi|257052237|ref|YP_003130070.1|	-	0.025	14.3	0.2	0.75	9.5	0.0	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3038)
Peptidase_M64	PF09471.5	gi|257052237|ref|YP_003130070.1|	-	0.028	14.0	1.1	0.062	12.9	0.8	1.5	1	0	0	1	1	1	0	IgA	Peptidase	M64
Reprolysin_3	PF13582.1	gi|257052237|ref|YP_003130070.1|	-	0.11	12.9	0.0	0.41	11.1	0.0	2.0	1	0	0	1	1	1	0	Metallo-peptidase	family	M12B	Reprolysin-like
Glyco_hydro_3	PF00933.16	gi|257052239|ref|YP_003130072.1|	-	7.4e-75	251.6	0.0	1e-74	251.2	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	N	terminal	domain
Glyco_hydro_3_C	PF01915.17	gi|257052239|ref|YP_003130072.1|	-	4.5e-60	202.9	0.0	1.1e-59	201.7	0.0	1.6	2	0	0	2	2	2	1	Glycosyl	hydrolase	family	3	C-terminal	domain
Fn3-like	PF14310.1	gi|257052239|ref|YP_003130072.1|	-	5.1e-13	48.7	0.0	1.2e-12	47.5	0.0	1.6	1	0	0	1	1	1	1	Fibronectin	type	III-like	domain
GETHR	PF05671.6	gi|257052239|ref|YP_003130072.1|	-	1.2	8.3	5.8	3	7.0	4.0	1.7	1	0	0	1	1	1	0	GETHR	pentapeptide	repeat	(5	copies)
BRI3BP	PF14965.1	gi|257052240|ref|YP_003130073.1|	-	0.81	9.0	5.8	1.3	8.3	4.0	1.4	1	0	0	1	1	1	0	Negative	regulator	of	p53/TP53
ABC2_membrane_3	PF12698.2	gi|257052241|ref|YP_003130074.1|	-	3.5e-07	29.5	10.1	3.5e-07	29.5	7.0	1.4	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.19	gi|257052241|ref|YP_003130074.1|	-	4.1e-05	22.8	8.3	4.1e-05	22.8	5.8	1.9	2	0	0	2	2	2	1	ABC-2	type	transporter
Arteri_Gl	PF00951.13	gi|257052241|ref|YP_003130074.1|	-	1.6	8.3	4.9	12	5.4	0.7	2.3	1	1	1	2	2	2	0	Arterivirus	GL	envelope	glycoprotein
ABC_tran	PF00005.22	gi|257052242|ref|YP_003130075.1|	-	2.5e-26	92.5	0.0	3.7e-26	92.0	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|257052242|ref|YP_003130075.1|	-	7.3e-10	39.2	0.0	0.00048	20.1	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
AAA_23	PF13476.1	gi|257052242|ref|YP_003130075.1|	-	3.5e-06	27.4	0.0	3.7e-06	27.4	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|257052242|ref|YP_003130075.1|	-	9.6e-05	21.8	0.0	0.00018	20.9	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_25	PF13481.1	gi|257052242|ref|YP_003130075.1|	-	0.0011	18.4	0.0	0.0016	17.9	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
DUF258	PF03193.11	gi|257052242|ref|YP_003130075.1|	-	0.0038	16.4	0.1	0.0061	15.7	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
MukB	PF04310.7	gi|257052242|ref|YP_003130075.1|	-	0.0096	15.2	0.1	0.017	14.4	0.0	1.3	1	0	0	1	1	1	1	MukB	N-terminal
MobB	PF03205.9	gi|257052242|ref|YP_003130075.1|	-	0.013	15.1	0.0	0.036	13.7	0.0	1.7	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
NACHT	PF05729.7	gi|257052242|ref|YP_003130075.1|	-	0.023	14.3	0.0	0.035	13.7	0.0	1.3	1	0	0	1	1	1	0	NACHT	domain
AAA_16	PF13191.1	gi|257052242|ref|YP_003130075.1|	-	0.032	14.2	0.0	0.045	13.7	0.0	1.3	1	0	0	1	1	1	0	AAA	ATPase	domain
ArgK	PF03308.11	gi|257052242|ref|YP_003130075.1|	-	0.036	12.8	0.1	0.09	11.5	0.1	1.6	2	0	0	2	2	2	0	ArgK	protein
SMC_N	PF02463.14	gi|257052242|ref|YP_003130075.1|	-	0.037	13.2	0.0	0.14	11.3	0.0	1.7	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.1	gi|257052242|ref|YP_003130075.1|	-	0.059	12.4	0.0	0.088	11.8	0.0	1.3	1	0	0	1	1	1	0	AAA	ATPase	domain
MMR_HSR1	PF01926.18	gi|257052242|ref|YP_003130075.1|	-	0.061	13.2	0.0	0.12	12.3	0.0	1.5	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_17	PF13207.1	gi|257052242|ref|YP_003130075.1|	-	0.082	13.7	0.4	0.18	12.6	0.2	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_10	PF12846.2	gi|257052242|ref|YP_003130075.1|	-	0.088	12.2	0.0	0.19	11.1	0.0	1.4	1	0	0	1	1	1	0	AAA-like	domain
DUF87	PF01935.12	gi|257052242|ref|YP_003130075.1|	-	0.097	12.4	0.2	0.24	11.1	0.1	1.6	2	0	0	2	2	2	0	Domain	of	unknown	function	DUF87
AAA_30	PF13604.1	gi|257052242|ref|YP_003130075.1|	-	0.11	12.0	0.1	0.19	11.2	0.1	1.3	1	0	0	1	1	1	0	AAA	domain
Miro	PF08477.8	gi|257052242|ref|YP_003130075.1|	-	0.14	12.6	0.0	0.36	11.3	0.0	1.6	1	0	0	1	1	1	0	Miro-like	protein
UPF0079	PF02367.12	gi|257052242|ref|YP_003130075.1|	-	0.15	11.7	0.1	0.26	10.9	0.1	1.3	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
FtsK_SpoIIIE	PF01580.13	gi|257052242|ref|YP_003130075.1|	-	0.15	11.4	0.0	0.26	10.7	0.0	1.4	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
RNA_helicase	PF00910.17	gi|257052242|ref|YP_003130075.1|	-	0.15	12.2	0.0	0.25	11.5	0.0	1.3	1	0	0	1	1	1	0	RNA	helicase
HTH_20	PF12840.2	gi|257052243|ref|YP_003130076.1|	-	0.0056	16.4	0.2	2.5	7.9	0.0	2.3	2	0	0	2	2	2	2	Helix-turn-helix	domain
Penicillinase_R	PF03965.11	gi|257052243|ref|YP_003130076.1|	-	0.0072	16.4	0.2	0.011	15.7	0.1	1.3	1	0	0	1	1	1	1	Penicillinase	repressor
DUF387	PF04079.11	gi|257052243|ref|YP_003130076.1|	-	0.0079	15.5	0.4	0.043	13.1	0.0	2.1	1	1	0	2	2	2	1	Putative	transcriptional	regulators	(Ypuh-like)
HTH_IclR	PF09339.5	gi|257052243|ref|YP_003130076.1|	-	0.0088	15.6	0.1	0.018	14.6	0.1	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
DUF4164	PF13747.1	gi|257052243|ref|YP_003130076.1|	-	0.02	14.9	1.9	0.02	14.9	1.3	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4164)
MarR_2	PF12802.2	gi|257052243|ref|YP_003130076.1|	-	0.031	13.9	0.0	0.075	12.7	0.0	1.7	1	0	0	1	1	1	0	MarR	family
GntR	PF00392.16	gi|257052243|ref|YP_003130076.1|	-	0.081	12.3	0.0	0.25	10.8	0.0	1.8	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
TrmB	PF01978.14	gi|257052243|ref|YP_003130076.1|	-	0.11	12.1	0.1	0.27	10.9	0.1	1.6	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
IGPS	PF00218.16	gi|257052245|ref|YP_003130078.1|	-	7.3e-67	225.0	0.0	8.6e-67	224.8	0.0	1.0	1	0	0	1	1	1	1	Indole-3-glycerol	phosphate	synthase
FMN_dh	PF01070.13	gi|257052245|ref|YP_003130078.1|	-	7.2e-07	28.3	2.5	1.5e-06	27.3	1.8	1.5	2	0	0	2	2	2	1	FMN-dependent	dehydrogenase
His_biosynth	PF00977.16	gi|257052245|ref|YP_003130078.1|	-	3.6e-06	26.4	0.1	0.00024	20.4	0.1	2.3	2	0	0	2	2	2	1	Histidine	biosynthesis	protein
NanE	PF04131.9	gi|257052245|ref|YP_003130078.1|	-	5.8e-06	25.4	1.2	2.7e-05	23.2	0.9	2.1	1	1	0	1	1	1	1	Putative	N-acetylmannosamine-6-phosphate	epimerase
Amidohydro_3	PF07969.6	gi|257052245|ref|YP_003130078.1|	-	0.0013	18.0	0.9	0.002	17.3	0.6	1.3	1	0	0	1	1	1	1	Amidohydrolase	family
EAL	PF00563.15	gi|257052245|ref|YP_003130078.1|	-	0.0025	17.3	0.3	0.0034	16.9	0.2	1.2	1	0	0	1	1	1	1	EAL	domain
Trp_syntA	PF00290.15	gi|257052245|ref|YP_003130078.1|	-	0.004	15.7	0.0	0.0063	15.0	0.0	1.3	1	0	0	1	1	1	1	Tryptophan	synthase	alpha	chain
QRPTase_C	PF01729.14	gi|257052245|ref|YP_003130078.1|	-	0.0078	15.7	0.3	0.013	14.9	0.2	1.3	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
DeoC	PF01791.4	gi|257052245|ref|YP_003130078.1|	-	0.016	14.4	0.8	1.5	8.0	0.2	2.5	2	1	0	2	2	2	0	DeoC/LacD	family	aldolase
DHO_dh	PF01180.16	gi|257052245|ref|YP_003130078.1|	-	0.03	13.2	0.2	0.048	12.6	0.1	1.3	1	0	0	1	1	1	0	Dihydroorotate	dehydrogenase
RTX	PF02382.10	gi|257052245|ref|YP_003130078.1|	-	0.091	11.0	0.0	0.12	10.6	0.0	1.1	1	0	0	1	1	1	0	RTX	N-terminal	domain
ThiG	PF05690.9	gi|257052245|ref|YP_003130078.1|	-	0.11	11.6	1.8	0.41	9.6	1.3	2.0	1	1	0	1	1	1	0	Thiazole	biosynthesis	protein	ThiG
PALP	PF00291.20	gi|257052246|ref|YP_003130079.1|	-	4.5e-36	124.6	0.3	6.3e-36	124.1	0.2	1.2	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Trp_syntA	PF00290.15	gi|257052247|ref|YP_003130080.1|	-	1.6e-91	305.4	0.0	1.9e-91	305.1	0.0	1.0	1	0	0	1	1	1	1	Tryptophan	synthase	alpha	chain
PcrB	PF01884.12	gi|257052247|ref|YP_003130080.1|	-	4.7e-06	26.0	0.3	3.6e-05	23.1	0.2	2.0	2	0	0	2	2	2	1	PcrB	family
PA	PF02225.17	gi|257052247|ref|YP_003130080.1|	-	0.0001	21.8	0.1	0.0094	15.6	0.0	2.5	2	0	0	2	2	2	1	PA	domain
His_biosynth	PF00977.16	gi|257052247|ref|YP_003130080.1|	-	0.00012	21.4	0.1	0.00027	20.2	0.1	1.6	2	0	0	2	2	2	1	Histidine	biosynthesis	protein
PucR	PF07905.6	gi|257052247|ref|YP_003130080.1|	-	0.0017	17.9	0.0	0.019	14.5	0.0	2.4	2	0	0	2	2	2	1	Purine	catabolism	regulatory	protein-like	family
FMN_dh	PF01070.13	gi|257052247|ref|YP_003130080.1|	-	0.024	13.4	0.1	0.043	12.6	0.0	1.4	1	1	0	1	1	1	0	FMN-dependent	dehydrogenase
IGPS	PF00218.16	gi|257052247|ref|YP_003130080.1|	-	0.085	11.9	0.0	0.13	11.3	0.0	1.4	1	1	0	1	1	1	0	Indole-3-glycerol	phosphate	synthase
Lysis_S	PF04971.7	gi|257052248|ref|YP_003130081.1|	-	0.023	14.3	0.3	0.023	14.3	0.2	2.1	2	0	0	2	2	2	0	Lysis	protein	S
Tox-WTIP	PF15654.1	gi|257052248|ref|YP_003130081.1|	-	0.11	12.1	0.3	0.32	10.6	0.2	1.8	1	0	0	1	1	1	0	Toxin	with	a	conserved	tryptophan	and	TIP	tripeptide	motif
DUF58	PF01882.13	gi|257052249|ref|YP_003130082.1|	-	4.1e-19	68.4	0.5	1.1e-18	67.1	0.3	1.8	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF58
DUF11	PF01345.13	gi|257052249|ref|YP_003130082.1|	-	4.9e-08	32.9	0.4	4.9e-08	32.9	0.3	2.1	3	0	0	3	3	3	1	Domain	of	unknown	function	DUF11
TRAP_beta	PF05753.9	gi|257052249|ref|YP_003130082.1|	-	0.0004	19.5	0.0	0.00061	19.0	0.0	1.2	1	0	0	1	1	1	1	Translocon-associated	protein	beta	(TRAPB)
CARDB	PF07705.6	gi|257052249|ref|YP_003130082.1|	-	0.025	14.6	0.0	0.16	12.0	0.0	2.2	2	0	0	2	2	2	0	CARDB
NPCBM_assoc	PF10633.4	gi|257052249|ref|YP_003130082.1|	-	0.19	11.8	4.3	0.11	12.5	0.4	2.4	3	0	0	3	3	3	0	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
GP46	PF07409.7	gi|257052250|ref|YP_003130083.1|	-	0.038	13.3	0.3	0.053	12.8	0.2	1.2	1	0	0	1	1	1	0	Phage	protein	GP46
DUF4129	PF13559.1	gi|257052251|ref|YP_003130084.1|	-	1e-11	44.5	6.2	1e-11	44.5	4.3	1.8	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4129)
AAA_3	PF07726.6	gi|257052252|ref|YP_003130085.1|	-	7.6e-66	219.6	0.0	2e-65	218.3	0.0	1.7	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_5	PF07728.9	gi|257052252|ref|YP_003130085.1|	-	2.5e-16	59.6	0.0	4.4e-16	58.8	0.0	1.4	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.24	gi|257052252|ref|YP_003130085.1|	-	1.9e-05	24.9	0.0	4.6e-05	23.6	0.0	1.8	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.21	gi|257052252|ref|YP_003130085.1|	-	4.5e-05	22.9	0.0	0.00068	19.1	0.0	2.1	1	1	0	1	1	1	1	Sigma-54	interaction	domain
MCM	PF00493.18	gi|257052252|ref|YP_003130085.1|	-	0.0041	15.9	0.0	0.096	11.4	0.0	2.1	2	0	0	2	2	2	1	MCM2/3/5	family
RuvB_N	PF05496.7	gi|257052252|ref|YP_003130085.1|	-	0.074	12.0	0.0	0.39	9.7	0.0	2.1	1	1	0	1	1	1	0	Holliday	junction	DNA	helicase	ruvB	N-terminus
Mg_chelatase	PF01078.16	gi|257052252|ref|YP_003130085.1|	-	0.12	11.5	0.1	2.5	7.2	0.0	2.6	3	0	0	3	3	3	0	Magnesium	chelatase,	subunit	ChlI
DUF134	PF02001.11	gi|257052252|ref|YP_003130085.1|	-	0.15	11.9	0.1	0.29	11.0	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF134
LPAM_2	PF13627.1	gi|257052253|ref|YP_003130086.1|	-	1.2	8.9	6.9	1.9	8.2	4.8	1.3	1	0	0	1	1	1	0	Prokaryotic	lipoprotein-attachment	site
DeoC	PF01791.4	gi|257052254|ref|YP_003130087.1|	-	6.3e-43	146.7	0.3	7.7e-43	146.4	0.2	1.1	1	0	0	1	1	1	1	DeoC/LacD	family	aldolase
AP_endonuc_2	PF01261.19	gi|257052254|ref|YP_003130087.1|	-	3.3e-05	23.2	0.2	5.9e-05	22.4	0.1	1.5	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
URO-D	PF01208.12	gi|257052254|ref|YP_003130087.1|	-	0.018	14.0	0.1	0.5	9.2	0.0	2.1	1	1	1	2	2	2	0	Uroporphyrinogen	decarboxylase	(URO-D)
DUF3197	PF11432.3	gi|257052254|ref|YP_003130087.1|	-	0.073	13.0	0.3	9.2	6.3	0.0	2.5	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3197)
PucR	PF07905.6	gi|257052254|ref|YP_003130087.1|	-	0.082	12.4	0.1	10	5.7	0.0	2.5	2	0	0	2	2	2	0	Purine	catabolism	regulatory	protein-like	family
TFIIB	PF00382.14	gi|257052255|ref|YP_003130088.1|	-	0.018	14.8	1.4	4.4	7.1	0.0	4.2	5	0	0	5	5	5	0	Transcription	factor	TFIIB	repeat
TrmB	PF01978.14	gi|257052255|ref|YP_003130088.1|	-	0.041	13.6	0.0	4.3	7.1	0.0	3.5	3	0	0	3	3	3	0	Sugar-specific	transcriptional	regulator	TrmB
DHQS	PF01959.11	gi|257052256|ref|YP_003130089.1|	-	8.4e-148	491.7	3.9	9.4e-148	491.6	2.7	1.0	1	0	0	1	1	1	1	3-dehydroquinate	synthase	(EC	4.6.1.3)
Hint_2	PF13403.1	gi|257052256|ref|YP_003130089.1|	-	0.00023	21.1	1.4	0.011	15.6	0.1	3.1	3	0	0	3	3	3	1	Hint	domain
QRPTase_C	PF01729.14	gi|257052256|ref|YP_003130089.1|	-	0.0014	18.1	0.8	0.029	13.9	0.1	2.4	2	0	0	2	2	2	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
Hint	PF01079.15	gi|257052256|ref|YP_003130089.1|	-	0.0022	17.2	0.0	0.52	9.4	0.0	2.4	2	0	0	2	2	2	2	Hint	module
DUF2154	PF09922.4	gi|257052256|ref|YP_003130089.1|	-	0.049	13.3	0.0	0.52	10.0	0.0	2.2	2	0	0	2	2	2	0	Cell	wall-active	antibiotics	response	protein	(DUF2154)
zinc_ribbon_2	PF13240.1	gi|257052257|ref|YP_003130090.1|	-	3.2e-06	26.4	0.4	5.3e-06	25.7	0.3	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
zf-ribbon_3	PF13248.1	gi|257052257|ref|YP_003130090.1|	-	3.3e-06	26.1	0.4	5e-06	25.5	0.3	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.2	gi|257052257|ref|YP_003130090.1|	-	7e-05	22.5	0.8	0.00011	21.9	0.6	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
Prok-RING_1	PF14446.1	gi|257052257|ref|YP_003130090.1|	-	0.00011	21.7	1.2	0.00017	21.2	0.8	1.2	1	0	0	1	1	1	1	Prokaryotic	RING	finger	family	1
zf-NADH-PPase	PF09297.6	gi|257052257|ref|YP_003130090.1|	-	0.0011	18.4	1.3	0.02	14.4	0.3	2.2	2	0	0	2	2	2	1	NADH	pyrophosphatase	zinc	ribbon	domain
DNA_ligase_ZBD	PF03119.11	gi|257052257|ref|YP_003130090.1|	-	0.0069	16.0	0.6	0.18	11.5	0.1	2.3	2	0	0	2	2	2	1	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
Nudix_N_2	PF14803.1	gi|257052257|ref|YP_003130090.1|	-	0.0084	15.7	0.6	3.3	7.4	0.0	2.4	2	0	0	2	2	2	2	Nudix	N-terminal
UPF0547	PF10571.4	gi|257052257|ref|YP_003130090.1|	-	0.0084	15.7	3.1	0.026	14.2	2.2	1.8	1	1	0	1	1	1	1	Uncharacterised	protein	family	UPF0547
zinc-ribbons_6	PF07191.7	gi|257052257|ref|YP_003130090.1|	-	0.021	14.5	0.5	0.035	13.8	0.4	1.3	1	0	0	1	1	1	0	zinc-ribbons
Rad50_zn_hook	PF04423.9	gi|257052257|ref|YP_003130090.1|	-	0.028	13.9	0.3	0.28	10.6	0.0	2.1	2	0	0	2	2	2	0	Rad50	zinc	hook	motif
OrfB_Zn_ribbon	PF07282.6	gi|257052257|ref|YP_003130090.1|	-	0.036	13.7	0.3	0.063	12.9	0.2	1.4	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
DUF1232	PF06803.7	gi|257052257|ref|YP_003130090.1|	-	0.05	13.0	1.7	0.11	11.9	0.5	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1232)
NinF	PF05810.7	gi|257052257|ref|YP_003130090.1|	-	0.089	12.6	0.1	0.15	11.9	0.1	1.4	1	0	0	1	1	1	0	NinF	protein
CarbpepA_inh	PF02977.10	gi|257052257|ref|YP_003130090.1|	-	0.1	12.1	2.7	0.17	11.4	1.9	1.3	1	0	0	1	1	1	0	Carboxypeptidase	A	inhibitor
Fer2_4	PF13510.1	gi|257052257|ref|YP_003130090.1|	-	0.1	12.4	0.3	0.14	12.0	0.2	1.3	1	1	0	1	1	1	0	2Fe-2S	iron-sulfur	cluster	binding	domain
zf-C4_Topoisom	PF01396.14	gi|257052257|ref|YP_003130090.1|	-	0.11	12.0	1.8	1.4	8.4	0.3	2.2	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
TerY-C	PF15616.1	gi|257052257|ref|YP_003130090.1|	-	0.11	12.3	2.3	1.9	8.4	1.6	2.1	1	1	0	1	1	1	0	TerY-C	metal	binding	domain
TM2	PF05154.11	gi|257052257|ref|YP_003130090.1|	-	0.12	12.6	1.0	0.19	11.9	0.7	1.3	1	0	0	1	1	1	0	TM2	domain
Zn-ribbon_8	PF09723.5	gi|257052257|ref|YP_003130090.1|	-	0.15	12.0	2.9	4.6	7.2	0.6	2.2	1	1	1	2	2	2	0	Zinc	ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|257052257|ref|YP_003130090.1|	-	0.42	9.9	3.5	0.99	8.7	2.4	1.6	1	1	0	1	1	1	0	TFIIB	zinc-binding
A2L_zn_ribbon	PF08792.5	gi|257052257|ref|YP_003130090.1|	-	0.52	9.8	1.9	5.2	6.6	0.2	2.2	1	1	1	2	2	2	0	A2L	zinc	ribbon	domain
PhnA_Zn_Ribbon	PF08274.7	gi|257052257|ref|YP_003130090.1|	-	1.4	8.7	6.6	14	5.5	4.6	2.1	1	1	0	1	1	1	0	PhnA	Zinc-Ribbon
DHquinase_I	PF01487.10	gi|257052258|ref|YP_003130091.1|	-	9.7e-47	159.4	0.0	1.1e-46	159.2	0.0	1.0	1	0	0	1	1	1	1	Type	I	3-dehydroquinase
Glyco_trans_4_4	PF13579.1	gi|257052258|ref|YP_003130091.1|	-	0.065	13.3	3.0	0.083	13.0	0.1	2.1	2	0	0	2	2	2	0	Glycosyl	transferase	4-like	domain
MarR_2	PF12802.2	gi|257052259|ref|YP_003130092.1|	-	9e-06	25.2	0.1	2.2e-05	24.0	0.0	1.6	2	0	0	2	2	2	1	MarR	family
HTH_IclR	PF09339.5	gi|257052259|ref|YP_003130092.1|	-	1.7e-05	24.2	0.1	2.9e-05	23.5	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
TrmB	PF01978.14	gi|257052259|ref|YP_003130092.1|	-	9.2e-05	22.0	0.0	0.00015	21.4	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.2	gi|257052259|ref|YP_003130092.1|	-	0.00033	20.3	0.0	0.00058	19.6	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR	PF01047.17	gi|257052259|ref|YP_003130092.1|	-	0.00057	19.5	0.0	0.00098	18.7	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.1	gi|257052259|ref|YP_003130092.1|	-	0.0031	17.8	0.0	0.0045	17.2	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
Sulfolobus_pRN	PF05584.6	gi|257052259|ref|YP_003130092.1|	-	0.004	17.0	0.0	0.0057	16.5	0.0	1.2	1	0	0	1	1	1	1	Sulfolobus	plasmid	regulatory	protein
Rrf2	PF02082.15	gi|257052259|ref|YP_003130092.1|	-	0.011	15.7	0.0	0.018	15.1	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_24	PF13412.1	gi|257052259|ref|YP_003130092.1|	-	0.018	14.4	0.0	0.033	13.5	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_23	PF13384.1	gi|257052259|ref|YP_003130092.1|	-	0.044	13.4	0.0	0.12	12.1	0.0	1.7	2	1	0	2	2	2	0	Homeodomain-like	domain
GntR	PF00392.16	gi|257052259|ref|YP_003130092.1|	-	0.056	12.8	0.2	0.097	12.1	0.0	1.6	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
Fe_dep_repress	PF01325.14	gi|257052259|ref|YP_003130092.1|	-	0.058	13.3	0.0	0.1	12.5	0.0	1.4	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_34	PF13601.1	gi|257052259|ref|YP_003130092.1|	-	0.068	13.2	0.0	0.11	12.5	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
PemK	PF02452.12	gi|257052260|ref|YP_003130093.1|	-	2.2e-06	27.8	0.0	2.8e-06	27.5	0.0	1.1	1	0	0	1	1	1	1	PemK-like	protein
N6_N4_Mtase	PF01555.13	gi|257052261|ref|YP_003130094.1|	-	2.5e-31	108.9	0.0	4.1e-31	108.2	0.0	1.3	1	0	0	1	1	1	1	DNA	methylase
Methyltransf_26	PF13659.1	gi|257052261|ref|YP_003130094.1|	-	3.5e-12	46.3	0.1	7.5e-06	25.9	0.0	2.3	2	0	0	2	2	2	2	Methyltransferase	domain
UPF0020	PF01170.13	gi|257052261|ref|YP_003130094.1|	-	6e-05	22.6	0.0	0.28	10.7	0.0	2.3	2	0	0	2	2	2	2	Putative	RNA	methylase	family	UPF0020
LCAT	PF02450.10	gi|257052261|ref|YP_003130094.1|	-	0.063	12.2	0.0	0.093	11.6	0.0	1.2	1	0	0	1	1	1	0	Lecithin:cholesterol	acyltransferase
Methyltransf_11	PF08241.7	gi|257052261|ref|YP_003130094.1|	-	0.081	13.4	0.2	1.7	9.2	0.0	2.7	3	0	0	3	3	3	0	Methyltransferase	domain
MCPsignal	PF00015.16	gi|257052262|ref|YP_003130095.1|	-	2.4e-55	187.3	54.0	3.5e-52	177.0	26.3	2.4	1	1	1	2	2	2	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
Laminin_II	PF06009.7	gi|257052262|ref|YP_003130095.1|	-	3.4e-05	23.5	40.4	0.033	13.9	0.9	4.1	2	2	2	4	4	4	3	Laminin	Domain	II
DUF948	PF06103.6	gi|257052262|ref|YP_003130095.1|	-	0.00013	21.7	29.6	0.054	13.3	0.5	5.0	2	2	1	4	4	4	2	Bacterial	protein	of	unknown	function	(DUF948)
CorA	PF01544.13	gi|257052262|ref|YP_003130095.1|	-	0.003	16.6	3.2	0.003	16.6	2.2	2.3	2	1	0	2	2	2	1	CorA-like	Mg2+	transporter	protein
TPR_MLP1_2	PF07926.7	gi|257052262|ref|YP_003130095.1|	-	0.0036	17.0	8.9	0.0036	17.0	6.2	2.7	2	1	0	2	2	2	1	TPR/MLP1/MLP2-like	protein
AAA_27	PF13514.1	gi|257052262|ref|YP_003130095.1|	-	0.0078	13.9	32.6	0.01	13.5	22.6	1.1	1	0	0	1	1	1	1	AAA	domain
IncA	PF04156.9	gi|257052262|ref|YP_003130095.1|	-	0.013	15.0	26.2	4.6	6.7	11.4	3.2	1	1	1	2	2	2	0	IncA	protein
RmuC	PF02646.11	gi|257052262|ref|YP_003130095.1|	-	0.016	14.0	25.5	0.98	8.1	1.4	4.1	2	2	2	4	4	4	0	RmuC	family
TMP_2	PF06791.8	gi|257052262|ref|YP_003130095.1|	-	0.017	14.7	33.5	0.045	13.3	5.6	3.4	1	1	2	3	3	3	0	Prophage	tail	length	tape	measure	protein
DUF1664	PF07889.7	gi|257052262|ref|YP_003130095.1|	-	0.022	14.5	27.5	1	9.1	1.0	4.3	2	2	2	4	4	4	0	Protein	of	unknown	function	(DUF1664)
Syntaxin	PF00804.20	gi|257052262|ref|YP_003130095.1|	-	0.025	14.7	32.1	2.6	8.2	4.9	3.9	1	1	1	3	3	3	0	Syntaxin
DASH_Dad1	PF08649.5	gi|257052262|ref|YP_003130095.1|	-	0.11	12.2	3.2	5.9	6.6	0.8	3.0	2	1	0	2	2	2	0	DASH	complex	subunit	Dad1
BLOC1_2	PF10046.4	gi|257052262|ref|YP_003130095.1|	-	0.12	12.4	30.1	1.9	8.6	1.0	4.9	2	2	2	4	4	4	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Spc7	PF08317.6	gi|257052262|ref|YP_003130095.1|	-	0.23	10.0	26.8	0.16	10.5	1.6	3.1	1	1	3	4	4	4	0	Spc7	kinetochore	protein
Syntaxin-6_N	PF09177.6	gi|257052262|ref|YP_003130095.1|	-	0.25	11.7	28.4	0.23	11.9	2.0	4.1	2	2	2	4	4	4	0	Syntaxin	6,	N-terminal
Aminotran_1_2	PF00155.16	gi|257052262|ref|YP_003130095.1|	-	0.32	9.9	7.3	1.2	7.9	0.3	2.9	1	1	1	3	3	3	0	Aminotransferase	class	I	and	II
Mnd1	PF03962.10	gi|257052262|ref|YP_003130095.1|	-	0.33	10.5	25.9	1.7	8.2	4.8	2.3	1	1	0	2	2	2	0	Mnd1	family
DUF2580	PF10824.3	gi|257052262|ref|YP_003130095.1|	-	0.38	11.1	34.2	0.14	12.5	0.5	4.0	1	1	1	3	3	3	0	Protein	of	unknown	function	(DUF2580)
LXG	PF04740.7	gi|257052262|ref|YP_003130095.1|	-	0.83	9.3	28.8	0.19	11.5	4.6	4.0	2	2	1	4	4	4	0	LXG	domain	of	WXG	superfamily
COG2	PF06148.6	gi|257052262|ref|YP_003130095.1|	-	0.93	9.3	28.3	5.7	6.8	2.4	4.5	2	2	2	4	4	4	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
AAA_13	PF13166.1	gi|257052262|ref|YP_003130095.1|	-	0.99	7.7	28.7	0.084	11.3	11.7	2.0	1	1	1	2	2	2	0	AAA	domain
V_ATPase_I	PF01496.14	gi|257052262|ref|YP_003130095.1|	-	1	7.1	20.8	4.9	4.8	14.2	2.1	1	1	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
Imm43	PF15602.1	gi|257052262|ref|YP_003130095.1|	-	1	9.2	3.7	0.84	9.5	0.9	2.0	1	1	1	2	2	2	0	Immunity	protein	43
GAS	PF13851.1	gi|257052262|ref|YP_003130095.1|	-	1.2	8.2	18.5	1.3	8.2	2.0	2.5	2	0	0	2	2	2	0	Growth-arrest	specific	micro-tubule	binding
HisK_N	PF09385.5	gi|257052262|ref|YP_003130095.1|	-	1.3	8.6	8.3	0.14	11.7	1.1	2.5	2	1	0	2	2	2	0	Histidine	kinase	N	terminal
Spectrin	PF00435.16	gi|257052262|ref|YP_003130095.1|	-	1.3	9.2	24.9	0.89	9.8	3.2	3.9	2	2	2	4	4	4	0	Spectrin	repeat
TMPIT	PF07851.8	gi|257052262|ref|YP_003130095.1|	-	1.7	7.6	17.7	0.25	10.3	1.9	2.9	2	1	1	3	3	3	0	TMPIT-like	protein
DUF2408	PF10303.4	gi|257052262|ref|YP_003130095.1|	-	2	8.5	17.0	0.38	10.8	1.2	3.5	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2408)
DASH_Duo1	PF08651.5	gi|257052262|ref|YP_003130095.1|	-	2	8.0	16.1	7.2	6.2	0.3	5.0	2	2	3	5	5	5	0	DASH	complex	subunit	Duo1
Sec5	PF15469.1	gi|257052262|ref|YP_003130095.1|	-	2.2	7.9	12.1	8.4	6.0	5.5	3.0	1	1	1	2	2	2	0	Exocyst	complex	component	Sec5
YjcZ	PF13990.1	gi|257052262|ref|YP_003130095.1|	-	2.4	7.2	16.4	2.3	7.2	0.7	3.0	1	1	2	3	3	3	0	YjcZ-like	protein
APG17	PF04108.7	gi|257052262|ref|YP_003130095.1|	-	2.6	6.7	25.7	0.16	10.7	3.8	3.0	1	1	1	2	2	2	0	Autophagy	protein	Apg17
RBD-FIP	PF09457.5	gi|257052262|ref|YP_003130095.1|	-	2.6	7.8	8.5	4.7	7.0	0.4	3.6	3	0	0	3	3	3	0	FIP	domain
Cauli_AT	PF03233.8	gi|257052262|ref|YP_003130095.1|	-	2.9	7.5	18.8	2.8	7.6	2.3	3.7	1	1	4	5	5	5	0	Aphid	transmission	protein
Fib_alpha	PF08702.5	gi|257052262|ref|YP_003130095.1|	-	3.1	7.9	23.9	8.9	6.4	1.6	4.0	1	1	2	4	4	4	0	Fibrinogen	alpha/beta	chain	family
Laminin_I	PF06008.9	gi|257052262|ref|YP_003130095.1|	-	3.5	6.8	35.9	4.2	6.5	2.7	3.6	1	1	1	3	3	3	0	Laminin	Domain	I
Seryl_tRNA_N	PF02403.17	gi|257052262|ref|YP_003130095.1|	-	3.6	7.6	34.1	1.4	8.9	2.2	4.2	1	1	3	4	4	4	0	Seryl-tRNA	synthetase	N-terminal	domain
DUF2203	PF09969.4	gi|257052262|ref|YP_003130095.1|	-	4.3	7.5	24.3	6.4	7.0	3.0	3.8	1	1	1	2	2	2	0	Uncharacterized	conserved	protein	(DUF2203)
GLE1	PF07817.8	gi|257052262|ref|YP_003130095.1|	-	4.6	6.1	12.4	3.6	6.4	0.4	3.3	2	2	2	4	4	4	0	GLE1-like	protein
LOH1CR12	PF10158.4	gi|257052262|ref|YP_003130095.1|	-	5.7	6.7	15.3	1.7	8.4	3.0	3.2	1	1	2	3	3	3	0	Tumour	suppressor	protein
Dicistro_VP4	PF11492.3	gi|257052262|ref|YP_003130095.1|	-	6	6.9	8.9	4.7	7.3	0.9	3.9	2	2	1	3	3	2	0	Cricket	paralysis	virus,	VP4
Spidroin_MaSp	PF11260.3	gi|257052262|ref|YP_003130095.1|	-	6.4	6.9	15.4	17	5.5	4.4	3.9	4	1	1	5	5	4	0	Major	ampullate	spidroin	1	and	2
Dor1	PF04124.7	gi|257052262|ref|YP_003130095.1|	-	6.5	5.1	17.8	1.3	7.4	2.4	2.8	1	1	1	2	2	2	0	Dor1-like	family
Fzo_mitofusin	PF04799.8	gi|257052262|ref|YP_003130095.1|	-	6.8	6.0	20.5	1.4	8.2	0.4	3.7	2	2	2	4	4	4	0	fzo-like	conserved	region
T2SF	PF00482.18	gi|257052262|ref|YP_003130095.1|	-	7.3	6.5	13.6	1.4	8.8	0.8	3.3	2	1	0	3	3	3	0	Type	II	secretion	system	(T2SS),	protein	F
DUF4128	PF13554.1	gi|257052262|ref|YP_003130095.1|	-	7.8	6.1	8.1	2.3	7.8	0.8	3.2	2	2	1	3	3	3	0	Bacteriophage	related	domain	of	unknown	function
TFIIB	PF00382.14	gi|257052263|ref|YP_003130096.1|	-	2.3e-40	136.2	0.3	7.1e-20	70.6	0.0	2.2	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.7	gi|257052263|ref|YP_003130096.1|	-	1.6e-17	62.5	3.5	1.2e-16	59.6	2.3	2.3	2	0	0	2	2	2	1	TFIIB	zinc-binding
OrfB_Zn_ribbon	PF07282.6	gi|257052263|ref|YP_003130096.1|	-	0.03	13.9	1.0	0.082	12.5	0.7	1.7	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Sigma70_r4	PF04545.11	gi|257052263|ref|YP_003130096.1|	-	0.035	13.3	0.1	0.71	9.2	0.0	2.7	2	0	0	2	2	2	0	Sigma-70,	region	4
DZR	PF12773.2	gi|257052263|ref|YP_003130096.1|	-	0.057	13.2	0.6	0.11	12.3	0.4	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
A2L_zn_ribbon	PF08792.5	gi|257052263|ref|YP_003130096.1|	-	0.09	12.2	1.1	0.15	11.5	0.8	1.4	1	0	0	1	1	1	0	A2L	zinc	ribbon	domain
UPF0104	PF03706.8	gi|257052264|ref|YP_003130097.1|	-	1.3e-31	110.0	22.5	2e-31	109.3	15.6	1.3	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0104)
Glycos_transf_2	PF00535.21	gi|257052264|ref|YP_003130097.1|	-	2.6e-28	98.8	0.0	3.8e-28	98.2	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|257052264|ref|YP_003130097.1|	-	6e-14	52.4	1.8	1.3e-13	51.3	1.3	1.5	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.4	gi|257052264|ref|YP_003130097.1|	-	4.7e-06	25.9	0.0	6.5e-06	25.4	0.0	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.1	gi|257052264|ref|YP_003130097.1|	-	0.0024	18.1	0.1	0.006	16.8	0.0	1.7	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
MFS_1	PF07690.11	gi|257052265|ref|YP_003130098.1|	-	1.8e-44	151.9	52.4	4.6e-31	107.8	15.9	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.19	gi|257052265|ref|YP_003130098.1|	-	1.9e-07	30.0	20.8	9.6e-05	21.1	4.3	2.6	2	2	0	2	2	2	2	Sugar	(and	other)	transporter
MFS_2	PF13347.1	gi|257052265|ref|YP_003130098.1|	-	9.9e-07	27.4	14.3	9.9e-07	27.4	9.9	2.5	1	1	1	2	2	2	1	MFS/sugar	transport	protein
LacY_symp	PF01306.14	gi|257052265|ref|YP_003130098.1|	-	6.9e-06	24.8	1.0	6.9e-06	24.8	0.7	2.4	2	1	0	2	2	2	1	LacY	proton/sugar	symporter
DUF1228	PF06779.9	gi|257052265|ref|YP_003130098.1|	-	0.00033	20.5	2.6	0.00033	20.5	1.8	3.4	3	1	1	4	4	4	1	Protein	of	unknown	function	(DUF1228)
TRI12	PF06609.8	gi|257052265|ref|YP_003130098.1|	-	0.0045	15.2	11.9	0.037	12.2	1.0	2.9	2	1	1	3	3	3	2	Fungal	trichothecene	efflux	pump	(TRI12)
MFS_1_like	PF12832.2	gi|257052265|ref|YP_003130098.1|	-	0.012	15.4	0.0	0.012	15.4	0.0	3.6	4	1	0	4	4	4	0	MFS_1	like	family
MFS_3	PF05977.8	gi|257052265|ref|YP_003130098.1|	-	0.87	7.6	17.2	0.025	12.7	7.6	1.5	2	0	0	2	2	2	0	Transmembrane	secretion	effector
Radical_SAM	PF04055.16	gi|257052266|ref|YP_003130099.1|	-	4.8e-16	59.3	0.0	5.9e-14	52.5	0.0	3.1	4	0	0	4	4	4	1	Radical	SAM	superfamily
HHH	PF00633.18	gi|257052266|ref|YP_003130099.1|	-	2.8e-06	26.7	0.0	8.4e-06	25.2	0.0	1.9	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
HHH_3	PF12836.2	gi|257052266|ref|YP_003130099.1|	-	5.8e-06	26.1	0.0	1.8e-05	24.5	0.0	1.8	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
HHH_5	PF14520.1	gi|257052266|ref|YP_003130099.1|	-	0.00097	19.2	0.0	0.0028	17.7	0.0	1.9	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
PsbU	PF06514.6	gi|257052266|ref|YP_003130099.1|	-	0.0013	18.4	0.0	0.0043	16.8	0.0	1.8	1	0	0	1	1	1	1	Photosystem	II	12	kDa	extrinsic	protein	(PsbU)
HHH_2	PF12826.2	gi|257052266|ref|YP_003130099.1|	-	0.07	13.0	0.1	0.22	11.4	0.0	1.8	2	0	0	2	2	2	0	Helix-hairpin-helix	motif
HSP20	PF00011.16	gi|257052268|ref|YP_003130101.1|	-	3.5e-05	23.5	0.0	5.8e-05	22.8	0.0	1.3	1	0	0	1	1	1	1	Hsp20/alpha	crystallin	family
NUDIX	PF00293.23	gi|257052269|ref|YP_003130102.1|	-	2.8e-17	62.6	0.1	4e-17	62.1	0.1	1.2	1	0	0	1	1	1	1	NUDIX	domain
Glyco_tranf_2_3	PF13641.1	gi|257052271|ref|YP_003130104.1|	-	0.013	15.3	0.1	0.022	14.5	0.1	1.4	1	0	0	1	1	1	0	Glycosyltransferase	like	family	2
DUF2330	PF10092.4	gi|257052271|ref|YP_003130104.1|	-	1.1	8.0	3.7	0.72	8.6	0.3	2.1	3	0	0	3	3	3	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2330)
PhnA_Zn_Ribbon	PF08274.7	gi|257052272|ref|YP_003130105.1|	-	0.0071	16.1	0.6	0.015	15.0	0.4	1.5	1	1	0	1	1	1	1	PhnA	Zinc-Ribbon
Zn-ribbon_8	PF09723.5	gi|257052272|ref|YP_003130105.1|	-	0.022	14.7	1.4	0.032	14.1	1.0	1.3	1	0	0	1	1	1	0	Zinc	ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|257052272|ref|YP_003130105.1|	-	0.028	13.7	2.4	0.042	13.1	1.7	1.3	1	0	0	1	1	1	0	TFIIB	zinc-binding
DZR	PF12773.2	gi|257052272|ref|YP_003130105.1|	-	0.032	14.0	1.7	0.068	13.0	1.2	1.6	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-CHY	PF05495.7	gi|257052272|ref|YP_003130105.1|	-	0.038	14.1	0.1	0.043	13.9	0.1	1.1	1	0	0	1	1	1	0	CHY	zinc	finger
zf-NADH-PPase	PF09297.6	gi|257052272|ref|YP_003130105.1|	-	0.048	13.1	0.2	0.048	13.1	0.1	1.8	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
Nudix_N_2	PF14803.1	gi|257052272|ref|YP_003130105.1|	-	0.065	12.9	2.0	2.6	7.7	0.1	2.2	2	0	0	2	2	2	0	Nudix	N-terminal
HypA	PF01155.14	gi|257052272|ref|YP_003130105.1|	-	0.11	12.2	0.6	0.11	12.2	0.4	1.1	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
Prok-RING_1	PF14446.1	gi|257052272|ref|YP_003130105.1|	-	0.16	11.7	2.6	0.53	10.0	1.8	1.8	1	1	0	1	1	1	0	Prokaryotic	RING	finger	family	1
UPF0547	PF10571.4	gi|257052272|ref|YP_003130105.1|	-	0.21	11.3	0.3	0.21	11.3	0.2	1.9	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
ADK_lid	PF05191.9	gi|257052272|ref|YP_003130105.1|	-	1	9.0	3.3	2.8	7.6	0.3	2.1	2	0	0	2	2	2	0	Adenylate	kinase,	active	site	lid
zf-dskA_traR	PF01258.12	gi|257052272|ref|YP_003130105.1|	-	3.5	7.4	6.5	11	5.8	0.3	2.2	2	0	0	2	2	2	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
DHH	PF01368.15	gi|257052273|ref|YP_003130106.1|	-	1.8e-15	56.8	0.0	2.5e-15	56.3	0.0	1.3	1	0	0	1	1	1	1	DHH	family
DHHA1	PF02272.14	gi|257052273|ref|YP_003130106.1|	-	8.2e-07	28.6	2.2	1e-06	28.3	0.3	2.0	2	0	0	2	2	2	1	DHHA1	domain
CcmD	PF04995.9	gi|257052273|ref|YP_003130106.1|	-	0.17	11.6	4.4	0.16	11.6	1.4	2.2	2	0	0	2	2	2	0	Heme	exporter	protein	D	(CcmD)
DAP10	PF07213.6	gi|257052273|ref|YP_003130106.1|	-	4.1	7.2	6.4	1.4	8.7	0.3	2.9	3	0	0	3	3	3	0	DAP10	membrane	protein
NAD_binding_10	PF13460.1	gi|257052274|ref|YP_003130107.1|	-	1.2e-19	70.9	0.6	1.6e-19	70.5	0.4	1.2	1	0	0	1	1	1	1	NADH(P)-binding
Epimerase	PF01370.16	gi|257052274|ref|YP_003130107.1|	-	3.9e-11	42.8	0.0	1.9e-10	40.5	0.0	1.9	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
TrkA_N	PF02254.13	gi|257052274|ref|YP_003130107.1|	-	1.5e-05	24.9	0.1	2.6e-05	24.2	0.0	1.4	1	0	0	1	1	1	1	TrkA-N	domain
3Beta_HSD	PF01073.14	gi|257052274|ref|YP_003130107.1|	-	4e-05	22.4	0.0	8.3e-05	21.4	0.0	1.6	2	0	0	2	2	2	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
UDPG_MGDP_dh_N	PF03721.9	gi|257052274|ref|YP_003130107.1|	-	6e-05	22.5	0.2	9.5e-05	21.8	0.1	1.3	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Pyr_redox	PF00070.22	gi|257052274|ref|YP_003130107.1|	-	0.00013	22.3	0.2	0.00041	20.7	0.3	1.7	2	0	0	2	2	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
F420_oxidored	PF03807.12	gi|257052274|ref|YP_003130107.1|	-	0.00019	21.8	0.1	0.00033	21.0	0.1	1.4	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
ApbA	PF02558.11	gi|257052274|ref|YP_003130107.1|	-	0.0003	20.2	0.1	0.00048	19.5	0.1	1.3	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
NAD_binding_2	PF03446.10	gi|257052274|ref|YP_003130107.1|	-	0.00059	19.7	0.0	0.00093	19.0	0.0	1.3	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
3HCDH_N	PF02737.13	gi|257052274|ref|YP_003130107.1|	-	0.0035	17.0	0.0	0.0053	16.4	0.0	1.3	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
RmlD_sub_bind	PF04321.12	gi|257052274|ref|YP_003130107.1|	-	0.005	15.7	0.2	0.06	12.2	0.1	2.4	1	1	0	1	1	1	1	RmlD	substrate	binding	domain
DAO	PF01266.19	gi|257052274|ref|YP_003130107.1|	-	0.017	14.0	5.0	0.056	12.3	3.5	2.2	1	1	0	1	1	1	0	FAD	dependent	oxidoreductase
Rossmann-like	PF10727.4	gi|257052274|ref|YP_003130107.1|	-	0.022	14.4	0.2	0.039	13.6	0.1	1.5	1	0	0	1	1	1	0	Rossmann-like	domain
ThiF	PF00899.16	gi|257052274|ref|YP_003130107.1|	-	0.044	13.6	1.3	0.11	12.2	0.9	1.6	1	0	0	1	1	1	0	ThiF	family
NmrA	PF05368.8	gi|257052274|ref|YP_003130107.1|	-	0.052	12.7	0.1	0.075	12.2	0.1	1.2	1	0	0	1	1	1	0	NmrA-like	family
IlvN	PF07991.7	gi|257052274|ref|YP_003130107.1|	-	0.071	12.4	0.1	0.11	11.8	0.0	1.3	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
NAD_Gly3P_dh_N	PF01210.18	gi|257052274|ref|YP_003130107.1|	-	0.11	12.1	0.1	0.16	11.6	0.0	1.3	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
DUF1731	PF08338.6	gi|257052274|ref|YP_003130107.1|	-	0.13	11.7	0.1	0.27	10.7	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1731)
Phage_lysis	PF03245.8	gi|257052275|ref|YP_003130108.1|	-	0.042	13.8	4.0	2.4	8.1	0.8	2.3	1	1	1	2	2	2	0	Bacteriophage	Rz	lysis	protein
MazG	PF03819.12	gi|257052275|ref|YP_003130108.1|	-	0.38	10.7	2.1	3.9	7.4	1.1	2.2	1	1	0	1	1	1	0	MazG	nucleotide	pyrophosphohydrolase	domain
Tubulin	PF00091.20	gi|257052276|ref|YP_003130109.1|	-	3.3e-25	89.1	0.5	1.7e-24	86.8	0.1	2.2	2	1	0	2	2	2	1	Tubulin/FtsZ	family,	GTPase	domain
Tubulin_2	PF13809.1	gi|257052276|ref|YP_003130109.1|	-	0.00069	18.6	0.2	0.0014	17.6	0.1	1.5	1	0	0	1	1	1	1	Tubulin	like
T2SF	PF00482.18	gi|257052276|ref|YP_003130109.1|	-	0.068	13.0	1.2	0.43	10.5	0.2	2.6	2	1	0	2	2	2	0	Type	II	secretion	system	(T2SS),	protein	F
Phosphodiest	PF01663.17	gi|257052278|ref|YP_003130111.1|	-	1.3e-56	192.5	0.0	1.5e-56	192.3	0.0	1.0	1	0	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF2063	PF09836.4	gi|257052278|ref|YP_003130111.1|	-	0.077	12.9	0.1	0.15	12.0	0.1	1.5	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2063)
Pyrophosphatase	PF00719.14	gi|257052280|ref|YP_003130113.1|	-	1.2e-56	190.4	0.6	1.4e-56	190.2	0.4	1.0	1	0	0	1	1	1	1	Inorganic	pyrophosphatase
PadR	PF03551.9	gi|257052281|ref|YP_003130114.1|	-	2.4e-14	52.8	0.8	3.9e-14	52.1	0.6	1.3	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_45	PF14947.1	gi|257052281|ref|YP_003130114.1|	-	0.0013	18.4	0.1	0.0023	17.6	0.1	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix
Rio2_N	PF09202.6	gi|257052281|ref|YP_003130114.1|	-	0.0022	17.9	0.1	0.0046	16.9	0.1	1.5	1	1	0	1	1	1	1	Rio2,	N-terminal
HTH_27	PF13463.1	gi|257052281|ref|YP_003130114.1|	-	0.0057	16.9	0.0	0.0089	16.3	0.0	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
DUF505	PF04458.7	gi|257052281|ref|YP_003130114.1|	-	0.061	11.4	0.2	0.065	11.3	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF505)
RVT_3	PF13456.1	gi|257052283|ref|YP_003130116.1|	-	3.2e-23	81.2	0.0	4.4e-23	80.8	0.0	1.2	1	0	0	1	1	1	1	Reverse	transcriptase-like
RNase_H	PF00075.19	gi|257052283|ref|YP_003130116.1|	-	3.1e-16	59.8	0.0	8.5e-16	58.5	0.0	1.6	2	0	0	2	2	2	1	RNase	H
Mac	PF12464.3	gi|257052283|ref|YP_003130116.1|	-	0.15	12.1	0.2	0.15	12.1	0.1	1.6	2	0	0	2	2	2	0	Maltose	acetyltransferase
TrkH	PF02386.11	gi|257052284|ref|YP_003130117.1|	-	2.4e-51	174.4	22.6	1.4e-50	171.9	10.4	2.2	2	0	0	2	2	2	2	Cation	transport	protein
TrkA_N	PF02254.13	gi|257052285|ref|YP_003130118.1|	-	2.7e-48	162.7	15.2	8.1e-26	90.3	3.0	3.4	4	0	0	4	4	3	2	TrkA-N	domain
TrkA_C	PF02080.16	gi|257052285|ref|YP_003130118.1|	-	1.4e-25	88.6	8.7	5.9e-12	45.0	0.0	4.0	3	1	0	3	3	3	2	TrkA-C	domain
Shikimate_DH	PF01488.15	gi|257052285|ref|YP_003130118.1|	-	5e-08	33.1	1.9	0.0074	16.3	0.0	2.4	2	0	0	2	2	2	2	Shikimate	/	quinate	5-dehydrogenase
NAD_binding_7	PF13241.1	gi|257052285|ref|YP_003130118.1|	-	5.4e-08	33.0	4.8	0.00033	20.8	0.7	3.1	2	1	1	3	3	3	2	Putative	NAD(P)-binding
FAD_binding_3	PF01494.14	gi|257052285|ref|YP_003130118.1|	-	9.3e-07	28.2	2.8	0.0033	16.5	0.0	2.8	3	0	0	3	3	3	2	FAD	binding	domain
Saccharop_dh	PF03435.13	gi|257052285|ref|YP_003130118.1|	-	2e-06	27.0	2.3	0.001	18.1	0.7	2.2	2	0	0	2	2	2	2	Saccharopine	dehydrogenase
Pyr_redox_2	PF07992.9	gi|257052285|ref|YP_003130118.1|	-	2.7e-06	27.4	1.3	0.016	15.1	0.0	2.8	2	2	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.13	gi|257052285|ref|YP_003130118.1|	-	4.4e-05	23.2	1.9	0.00073	19.2	0.2	2.7	3	0	0	3	3	3	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
UDPG_MGDP_dh_N	PF03721.9	gi|257052285|ref|YP_003130118.1|	-	4.5e-05	22.9	0.5	0.00013	21.4	0.3	1.9	1	1	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NAD_binding_2	PF03446.10	gi|257052285|ref|YP_003130118.1|	-	0.00084	19.2	0.6	0.034	13.9	0.4	2.6	2	0	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
F420_oxidored	PF03807.12	gi|257052285|ref|YP_003130118.1|	-	0.00089	19.6	2.3	0.035	14.5	0.1	3.5	3	1	0	3	3	3	1	NADP	oxidoreductase	coenzyme	F420-dependent
ThiS	PF02597.15	gi|257052285|ref|YP_003130118.1|	-	0.0032	17.8	2.4	2.8	8.4	0.1	4.1	3	1	0	3	3	3	1	ThiS	family
CPSase_L_chain	PF00289.17	gi|257052285|ref|YP_003130118.1|	-	0.0038	17.3	1.2	2.9	8.0	0.1	3.4	3	0	0	3	3	3	1	Carbamoyl-phosphate	synthase	L	chain,	N-terminal	domain
ThiF	PF00899.16	gi|257052285|ref|YP_003130118.1|	-	0.0039	17.0	1.4	0.037	13.8	0.3	2.9	3	0	0	3	3	3	1	ThiF	family
HEM4	PF02602.10	gi|257052285|ref|YP_003130118.1|	-	0.0054	16.0	0.1	0.012	14.9	0.1	1.6	1	0	0	1	1	1	1	Uroporphyrinogen-III	synthase	HemD
ApbA	PF02558.11	gi|257052285|ref|YP_003130118.1|	-	0.0069	15.8	0.6	0.15	11.4	0.0	2.7	3	0	0	3	3	3	1	Ketopantoate	reductase	PanE/ApbA
Pyr_redox	PF00070.22	gi|257052285|ref|YP_003130118.1|	-	0.013	15.8	3.0	4.8	7.6	0.6	3.4	3	0	0	3	3	3	0	Pyridine	nucleotide-disulphide	oxidoreductase
DUF1188	PF06690.6	gi|257052285|ref|YP_003130118.1|	-	0.019	14.0	0.1	0.056	12.5	0.1	1.8	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1188)
NAD_Gly3P_dh_N	PF01210.18	gi|257052285|ref|YP_003130118.1|	-	0.02	14.6	0.0	0.081	12.6	0.0	2.1	3	0	0	3	3	3	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
DAO	PF01266.19	gi|257052285|ref|YP_003130118.1|	-	0.23	10.3	3.6	1.3	7.8	0.5	2.7	2	1	0	2	2	2	0	FAD	dependent	oxidoreductase
TrkA_C	PF02080.16	gi|257052286|ref|YP_003130119.1|	-	4e-12	45.5	0.4	9.3e-12	44.3	0.3	1.7	1	0	0	1	1	1	1	TrkA-C	domain
HTH_24	PF13412.1	gi|257052286|ref|YP_003130119.1|	-	1.3e-09	37.2	0.3	2.6e-09	36.3	0.2	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.1	gi|257052286|ref|YP_003130119.1|	-	2.7e-08	33.2	0.7	6.2e-08	32.0	0.5	1.7	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.7	gi|257052286|ref|YP_003130119.1|	-	2.4e-06	27.0	0.1	6.3e-06	25.7	0.0	1.7	1	0	0	1	1	1	1	HTH	domain
HTH_20	PF12840.2	gi|257052286|ref|YP_003130119.1|	-	0.0002	21.1	0.0	0.00039	20.1	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|257052286|ref|YP_003130119.1|	-	0.00041	19.9	0.3	0.001	18.6	0.1	1.7	2	0	0	2	2	1	1	MarR	family
HTH_5	PF01022.15	gi|257052286|ref|YP_003130119.1|	-	0.0036	16.9	0.0	0.006	16.2	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
GntR	PF00392.16	gi|257052286|ref|YP_003130119.1|	-	0.0047	16.3	0.2	0.014	14.8	0.1	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_28	PF13518.1	gi|257052286|ref|YP_003130119.1|	-	0.0054	16.7	0.1	0.012	15.6	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_27	PF13463.1	gi|257052286|ref|YP_003130119.1|	-	0.0081	16.4	0.3	0.12	12.7	0.0	2.4	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
MarR	PF01047.17	gi|257052286|ref|YP_003130119.1|	-	0.01	15.4	0.0	0.019	14.6	0.0	1.4	1	0	0	1	1	1	0	MarR	family
HTH_DeoR	PF08220.7	gi|257052286|ref|YP_003130119.1|	-	0.011	15.2	0.0	0.023	14.2	0.0	1.6	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
Rrf2	PF02082.15	gi|257052286|ref|YP_003130119.1|	-	0.02	14.9	0.0	0.044	13.8	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator
Put_DNA-bind_N	PF06971.8	gi|257052286|ref|YP_003130119.1|	-	0.027	14.2	0.0	0.093	12.5	0.0	1.8	2	0	0	2	2	2	0	Putative	DNA-binding	protein	N-terminus
TrmB	PF01978.14	gi|257052286|ref|YP_003130119.1|	-	0.031	13.9	0.1	0.098	12.3	0.0	1.8	2	0	0	2	2	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_CodY	PF08222.6	gi|257052286|ref|YP_003130119.1|	-	0.042	13.2	0.1	0.15	11.4	0.0	1.9	2	0	0	2	2	2	0	CodY	helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|257052286|ref|YP_003130119.1|	-	0.045	13.3	0.1	0.11	12.1	0.1	1.6	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
DDRGK	PF09756.4	gi|257052286|ref|YP_003130119.1|	-	0.056	12.8	0.0	0.083	12.2	0.0	1.2	1	0	0	1	1	1	0	DDRGK	domain
Sigma70_r4_2	PF08281.7	gi|257052286|ref|YP_003130119.1|	-	0.066	12.6	0.3	0.18	11.3	0.2	1.8	1	1	0	1	1	1	0	Sigma-70,	region	4
Fe_dep_repress	PF01325.14	gi|257052286|ref|YP_003130119.1|	-	0.085	12.8	0.0	0.17	11.8	0.0	1.5	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_34	PF13601.1	gi|257052286|ref|YP_003130119.1|	-	0.1	12.6	0.0	0.21	11.6	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_23	PF13384.1	gi|257052286|ref|YP_003130119.1|	-	0.11	12.1	0.1	0.26	11.0	0.1	1.6	1	0	0	1	1	1	0	Homeodomain-like	domain
OmdA	PF13376.1	gi|257052287|ref|YP_003130120.1|	-	1.3	8.7	5.4	2.6	7.7	0.1	2.8	3	0	0	3	3	3	0	Bacteriocin-protection,	YdeI	or	OmpD-Associated
Usp	PF00582.21	gi|257052288|ref|YP_003130121.1|	-	5.5e-15	55.7	2.3	6.4e-15	55.5	1.6	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
TrkA_N	PF02254.13	gi|257052289|ref|YP_003130122.1|	-	4.9e-28	97.4	1.4	8.4e-28	96.6	1.0	1.4	1	0	0	1	1	1	1	TrkA-N	domain
TrkA_C	PF02080.16	gi|257052289|ref|YP_003130122.1|	-	1.4e-15	56.6	1.6	3.6e-14	52.1	0.1	2.4	2	0	0	2	2	2	1	TrkA-C	domain
Saccharop_dh	PF03435.13	gi|257052289|ref|YP_003130122.1|	-	7.8e-07	28.4	0.4	1.1e-06	27.9	0.3	1.2	1	0	0	1	1	1	1	Saccharopine	dehydrogenase
F420_oxidored	PF03807.12	gi|257052289|ref|YP_003130122.1|	-	8.4e-07	29.3	0.3	2e-06	28.1	0.2	1.7	1	1	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
XdhC_C	PF13478.1	gi|257052289|ref|YP_003130122.1|	-	1.6e-05	25.2	0.1	2.2e-05	24.7	0.1	1.3	1	0	0	1	1	1	1	XdhC	Rossmann	domain
NAD_binding_10	PF13460.1	gi|257052289|ref|YP_003130122.1|	-	7.8e-05	22.7	0.3	0.00012	22.1	0.2	1.3	1	0	0	1	1	1	1	NADH(P)-binding
Shikimate_DH	PF01488.15	gi|257052289|ref|YP_003130122.1|	-	0.00011	22.3	0.2	0.00016	21.8	0.1	1.4	1	1	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
3HCDH_N	PF02737.13	gi|257052289|ref|YP_003130122.1|	-	0.00023	20.8	0.3	0.00033	20.3	0.2	1.2	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_7	PF13241.1	gi|257052289|ref|YP_003130122.1|	-	0.0003	20.9	0.2	0.00054	20.1	0.1	1.4	1	0	0	1	1	1	1	Putative	NAD(P)-binding
Pyr_redox	PF00070.22	gi|257052289|ref|YP_003130122.1|	-	0.00072	19.9	0.4	0.0021	18.4	0.2	1.9	1	1	1	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_2	PF03446.10	gi|257052289|ref|YP_003130122.1|	-	0.003	17.4	0.1	0.0059	16.4	0.0	1.5	1	1	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NmrA	PF05368.8	gi|257052289|ref|YP_003130122.1|	-	0.0056	15.9	0.2	0.009	15.2	0.2	1.3	1	0	0	1	1	1	1	NmrA-like	family
Peripla_BP_3	PF13377.1	gi|257052289|ref|YP_003130122.1|	-	0.0087	16.0	0.5	0.03	14.3	0.2	1.8	2	0	0	2	2	2	1	Periplasmic	binding	protein-like	domain
CPSase_L_chain	PF00289.17	gi|257052289|ref|YP_003130122.1|	-	0.012	15.6	0.5	0.031	14.3	0.2	1.8	1	1	2	3	3	3	0	Carbamoyl-phosphate	synthase	L	chain,	N-terminal	domain
2-Hacid_dh_C	PF02826.14	gi|257052289|ref|YP_003130122.1|	-	0.013	14.6	0.0	0.027	13.6	0.0	1.6	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
KR	PF08659.5	gi|257052289|ref|YP_003130122.1|	-	0.015	14.9	0.1	0.021	14.5	0.1	1.2	1	0	0	1	1	1	0	KR	domain
ApbA	PF02558.11	gi|257052289|ref|YP_003130122.1|	-	0.015	14.7	0.0	0.02	14.3	0.0	1.2	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
ThiF	PF00899.16	gi|257052289|ref|YP_003130122.1|	-	0.028	14.2	1.4	4.3	7.1	0.1	2.3	1	1	1	2	2	2	0	ThiF	family
GFO_IDH_MocA	PF01408.17	gi|257052289|ref|YP_003130122.1|	-	0.028	14.9	0.2	0.055	13.9	0.1	1.5	1	1	0	1	1	1	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
UDPG_MGDP_dh_N	PF03721.9	gi|257052289|ref|YP_003130122.1|	-	0.029	13.7	0.6	0.4	10.0	0.0	2.1	1	1	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
FAD_binding_3	PF01494.14	gi|257052289|ref|YP_003130122.1|	-	0.03	13.3	0.1	0.053	12.5	0.1	1.5	1	1	0	1	1	1	0	FAD	binding	domain
AlaDh_PNT_C	PF01262.16	gi|257052289|ref|YP_003130122.1|	-	0.11	12.0	0.1	0.15	11.6	0.0	1.3	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Usp	PF00582.21	gi|257052290|ref|YP_003130123.1|	-	2.5e-09	37.4	0.7	2.9e-09	37.2	0.5	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
CbiD	PF01888.12	gi|257052290|ref|YP_003130123.1|	-	0.11	11.4	0.2	0.13	11.1	0.2	1.0	1	0	0	1	1	1	0	CbiD
AA_permease_2	PF13520.1	gi|257052291|ref|YP_003130124.1|	-	4e-56	190.3	40.8	5.1e-56	190.0	28.3	1.1	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.16	gi|257052291|ref|YP_003130124.1|	-	1.3e-47	162.2	39.3	1.8e-47	161.7	27.3	1.1	1	0	0	1	1	1	1	Amino	acid	permease
Usp	PF00582.21	gi|257052291|ref|YP_003130124.1|	-	6.4e-27	94.4	16.1	7.4e-16	58.6	4.4	2.3	2	0	0	2	2	2	2	Universal	stress	protein	family
DNA_topoisoIV	PF00521.15	gi|257052291|ref|YP_003130124.1|	-	0.048	12.4	0.1	0.077	11.8	0.1	1.2	1	0	0	1	1	1	0	DNA	gyrase/topoisomerase	IV,	subunit	A
TrkA_N	PF02254.13	gi|257052292|ref|YP_003130125.1|	-	1.8e-26	92.3	3.3	2.5e-26	91.9	1.2	1.8	2	0	0	2	2	2	1	TrkA-N	domain
TrkA_C	PF02080.16	gi|257052292|ref|YP_003130125.1|	-	3.1e-17	61.9	1.2	2.9e-16	58.8	0.1	2.3	2	0	0	2	2	2	1	TrkA-C	domain
F420_oxidored	PF03807.12	gi|257052292|ref|YP_003130125.1|	-	3.1e-06	27.5	1.1	1.3e-05	25.5	0.2	2.3	2	1	1	3	3	3	1	NADP	oxidoreductase	coenzyme	F420-dependent
XdhC_C	PF13478.1	gi|257052292|ref|YP_003130125.1|	-	1.5e-05	25.3	0.1	2.2e-05	24.7	0.1	1.4	1	0	0	1	1	1	1	XdhC	Rossmann	domain
Saccharop_dh	PF03435.13	gi|257052292|ref|YP_003130125.1|	-	0.00014	21.0	0.5	0.00023	20.2	0.3	1.4	1	0	0	1	1	1	1	Saccharopine	dehydrogenase
3HCDH_N	PF02737.13	gi|257052292|ref|YP_003130125.1|	-	0.00068	19.3	0.3	0.0011	18.6	0.2	1.3	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_10	PF13460.1	gi|257052292|ref|YP_003130125.1|	-	0.00072	19.6	1.7	0.0012	18.8	0.3	1.9	2	0	0	2	2	2	1	NADH(P)-binding
PEP-utilizers	PF00391.18	gi|257052292|ref|YP_003130125.1|	-	0.00094	18.7	0.7	0.0037	16.7	0.0	2.3	3	0	0	3	3	3	1	PEP-utilising	enzyme,	mobile	domain
NAD_binding_7	PF13241.1	gi|257052292|ref|YP_003130125.1|	-	0.0016	18.6	0.5	0.0043	17.2	0.1	1.8	2	0	0	2	2	2	1	Putative	NAD(P)-binding
Pyr_redox	PF00070.22	gi|257052292|ref|YP_003130125.1|	-	0.0019	18.5	0.1	0.01	16.2	0.1	2.1	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Shikimate_DH	PF01488.15	gi|257052292|ref|YP_003130125.1|	-	0.0047	17.0	0.7	0.0094	16.0	0.2	1.7	1	1	1	2	2	2	1	Shikimate	/	quinate	5-dehydrogenase
UDPG_MGDP_dh_N	PF03721.9	gi|257052292|ref|YP_003130125.1|	-	0.0062	15.9	0.4	0.17	11.2	0.1	2.2	1	1	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NAD_binding_2	PF03446.10	gi|257052292|ref|YP_003130125.1|	-	0.0071	16.2	0.1	0.022	14.5	0.0	1.8	1	1	1	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
PK_C	PF02887.11	gi|257052292|ref|YP_003130125.1|	-	0.018	14.6	1.1	0.057	12.9	0.2	2.3	2	1	0	2	2	2	0	Pyruvate	kinase,	alpha/beta	domain
ThiF	PF00899.16	gi|257052292|ref|YP_003130125.1|	-	0.018	14.8	1.9	2	8.2	0.2	2.4	1	1	1	2	2	2	0	ThiF	family
CPSase_L_chain	PF00289.17	gi|257052292|ref|YP_003130125.1|	-	0.024	14.7	0.2	0.055	13.5	0.1	1.7	1	1	0	1	1	1	0	Carbamoyl-phosphate	synthase	L	chain,	N-terminal	domain
GFO_IDH_MocA	PF01408.17	gi|257052292|ref|YP_003130125.1|	-	0.041	14.4	0.6	0.1	13.1	0.4	1.8	1	1	0	1	1	1	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
KR	PF08659.5	gi|257052292|ref|YP_003130125.1|	-	0.044	13.4	0.1	0.062	12.9	0.1	1.2	1	0	0	1	1	1	0	KR	domain
2-Hacid_dh_C	PF02826.14	gi|257052292|ref|YP_003130125.1|	-	0.062	12.4	0.0	0.11	11.6	0.0	1.5	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
FMN_dh	PF01070.13	gi|257052292|ref|YP_003130125.1|	-	0.074	11.8	0.7	4.2	6.0	0.2	2.0	1	1	1	2	2	2	0	FMN-dependent	dehydrogenase
Peripla_BP_3	PF13377.1	gi|257052292|ref|YP_003130125.1|	-	0.11	12.4	2.0	0.11	12.4	0.3	1.7	2	0	0	2	2	2	0	Periplasmic	binding	protein-like	domain
NmrA	PF05368.8	gi|257052292|ref|YP_003130125.1|	-	0.14	11.4	0.3	0.49	9.6	0.1	1.8	1	1	1	2	2	2	0	NmrA-like	family
TrkH	PF02386.11	gi|257052293|ref|YP_003130126.1|	-	4.7e-62	209.6	13.7	9.2e-61	205.3	6.7	2.1	1	1	1	2	2	2	2	Cation	transport	protein
DUF2798	PF11391.3	gi|257052294|ref|YP_003130127.1|	-	0.22	11.3	3.1	0.19	11.5	1.1	1.7	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF2798)
Tox-WTIP	PF15654.1	gi|257052294|ref|YP_003130127.1|	-	0.63	9.6	3.7	0.94	9.1	2.6	1.4	1	1	0	1	1	1	0	Toxin	with	a	conserved	tryptophan	and	TIP	tripeptide	motif
TFIIB	PF00382.14	gi|257052295|ref|YP_003130128.1|	-	4.1e-49	164.2	2.4	8.3e-26	89.5	0.2	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.7	gi|257052295|ref|YP_003130128.1|	-	2.2e-19	68.5	3.6	4.3e-19	67.5	2.5	1.5	1	0	0	1	1	1	1	TFIIB	zinc-binding
TerY-C	PF15616.1	gi|257052295|ref|YP_003130128.1|	-	0.01	15.7	0.2	0.027	14.4	0.1	1.7	1	0	0	1	1	1	0	TerY-C	metal	binding	domain
HTH_23	PF13384.1	gi|257052295|ref|YP_003130128.1|	-	0.01	15.4	0.4	0.6	9.8	0.0	3.3	3	0	0	3	3	3	0	Homeodomain-like	domain
A2L_zn_ribbon	PF08792.5	gi|257052295|ref|YP_003130128.1|	-	0.015	14.7	0.7	0.033	13.6	0.5	1.6	1	0	0	1	1	1	0	A2L	zinc	ribbon	domain
PhnA_Zn_Ribbon	PF08274.7	gi|257052295|ref|YP_003130128.1|	-	0.022	14.5	2.2	0.045	13.5	1.5	1.5	1	0	0	1	1	1	0	PhnA	Zinc-Ribbon
Lar_restr_allev	PF14354.1	gi|257052295|ref|YP_003130128.1|	-	0.036	14.3	0.5	0.13	12.6	0.4	1.9	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
Sigma70_r4	PF04545.11	gi|257052295|ref|YP_003130128.1|	-	0.049	12.9	2.5	0.3	10.4	0.0	3.3	3	1	0	3	3	3	0	Sigma-70,	region	4
HARE-HTH	PF05066.8	gi|257052295|ref|YP_003130128.1|	-	0.055	13.8	0.0	2.4	8.5	0.0	2.4	2	0	0	2	2	2	0	HB1,	ASXL,	restriction	endonuclease	HTH	domain
zf-ribbon_3	PF13248.1	gi|257052295|ref|YP_003130128.1|	-	0.057	12.6	1.9	0.17	11.1	1.3	1.8	1	1	0	1	1	1	0	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.6	gi|257052295|ref|YP_003130128.1|	-	0.1	12.2	1.3	0.43	10.2	0.4	2.2	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
zf-C4_Topoisom	PF01396.14	gi|257052295|ref|YP_003130128.1|	-	0.55	9.7	2.6	0.27	10.7	0.1	1.8	1	1	1	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
Zn-ribbon_8	PF09723.5	gi|257052295|ref|YP_003130128.1|	-	0.93	9.4	4.8	1.3	9.0	0.6	2.5	1	1	0	2	2	2	0	Zinc	ribbon	domain
Trm112p	PF03966.11	gi|257052295|ref|YP_003130128.1|	-	0.98	9.8	3.9	26	5.2	2.7	2.7	1	1	0	1	1	1	0	Trm112p-like	protein
DUF3082	PF11282.3	gi|257052296|ref|YP_003130129.1|	-	0.64	10.1	5.2	0.42	10.7	1.1	2.3	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF3082)
HTH_20	PF12840.2	gi|257052297|ref|YP_003130130.1|	-	2.6e-07	30.3	0.2	3.5e-07	29.9	0.2	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|257052297|ref|YP_003130130.1|	-	0.00024	20.4	0.0	0.00034	19.9	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.7	gi|257052297|ref|YP_003130130.1|	-	0.0012	18.4	0.0	0.0025	17.4	0.0	1.5	1	0	0	1	1	1	1	HTH	domain
MarR_2	PF12802.2	gi|257052297|ref|YP_003130130.1|	-	0.0015	18.1	0.0	0.0021	17.6	0.0	1.4	1	1	0	1	1	1	1	MarR	family
HTH_AsnC-type	PF13404.1	gi|257052297|ref|YP_003130130.1|	-	0.0028	17.1	2.5	0.0079	15.7	1.7	1.8	1	1	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
PadR	PF03551.9	gi|257052297|ref|YP_003130130.1|	-	0.0091	15.7	0.0	0.012	15.3	0.0	1.3	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
TrmB	PF01978.14	gi|257052297|ref|YP_003130130.1|	-	0.013	15.2	0.0	0.019	14.6	0.0	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.1	gi|257052297|ref|YP_003130130.1|	-	0.024	14.9	0.0	0.036	14.3	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF2513	PF10711.4	gi|257052297|ref|YP_003130130.1|	-	0.028	14.5	0.0	0.036	14.1	0.0	1.2	1	0	0	1	1	1	0	Hypothetical	protein	(DUF2513)
HTH_IclR	PF09339.5	gi|257052297|ref|YP_003130130.1|	-	0.041	13.4	0.0	0.063	12.8	0.0	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
FUR	PF01475.14	gi|257052297|ref|YP_003130130.1|	-	0.074	12.9	0.0	0.089	12.7	0.0	1.2	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
Chlor_dismutase	PF06778.7	gi|257052298|ref|YP_003130131.1|	-	3e-52	177.1	0.0	6.7e-52	176.0	0.0	1.6	1	0	0	1	1	1	1	Chlorite	dismutase
ABM	PF03992.11	gi|257052298|ref|YP_003130131.1|	-	2e-10	40.5	0.3	2e-10	40.5	0.2	3.3	3	1	0	3	3	3	1	Antibiotic	biosynthesis	monooxygenase
NTP_transf_2	PF01909.18	gi|257052299|ref|YP_003130132.1|	-	4.5e-08	33.3	0.3	5.6e-08	33.0	0.2	1.5	1	1	0	1	1	1	1	Nucleotidyltransferase	domain
DUF4269	PF14091.1	gi|257052299|ref|YP_003130132.1|	-	0.07	13.0	0.0	0.092	12.6	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4269)
Adenyl_cycl_N	PF12633.2	gi|257052299|ref|YP_003130132.1|	-	0.15	11.5	0.0	0.23	10.9	0.0	1.3	1	0	0	1	1	1	0	Adenylate	cyclase	NT	domain
DUF1488	PF07369.6	gi|257052299|ref|YP_003130132.1|	-	4.5	7.1	7.0	4.9	7.0	3.0	2.3	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1488)
DUF86	PF01934.12	gi|257052300|ref|YP_003130133.1|	-	1.4e-23	82.8	0.1	1.5e-23	82.6	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF86
NTase_sub_bind	PF08780.6	gi|257052300|ref|YP_003130133.1|	-	0.00046	19.9	0.1	0.00055	19.7	0.1	1.2	1	0	0	1	1	1	1	Nucleotidyltransferase	substrate	binding	protein	like
Ribosomal_S5_C	PF03719.10	gi|257052300|ref|YP_003130133.1|	-	0.12	11.6	0.0	0.21	10.8	0.0	1.4	1	0	0	1	1	1	0	Ribosomal	protein	S5,	C-terminal	domain
NifU_N	PF01592.11	gi|257052302|ref|YP_003130135.1|	-	2.2e-28	98.7	0.1	2.6e-28	98.5	0.1	1.1	1	0	0	1	1	1	1	NifU-like	N	terminal	domain
SufE	PF02657.10	gi|257052302|ref|YP_003130135.1|	-	0.0057	16.2	0.0	0.0082	15.7	0.0	1.2	1	0	0	1	1	1	1	Fe-S	metabolism	associated	domain
bPH_3	PF14470.1	gi|257052303|ref|YP_003130136.1|	-	0.0046	17.1	0.0	0.0074	16.5	0.0	1.3	1	0	0	1	1	1	1	Bacterial	PH	domain
HSBP1	PF06825.7	gi|257052303|ref|YP_003130136.1|	-	0.14	11.7	0.5	0.77	9.3	0.0	2.3	3	0	0	3	3	3	0	Heat	shock	factor	binding	protein	1
AATF-Che1	PF13339.1	gi|257052303|ref|YP_003130136.1|	-	0.43	10.7	7.7	1.1	9.4	0.2	3.0	2	1	1	3	3	3	0	Apoptosis	antagonizing	transcription	factor
OEP	PF02321.13	gi|257052303|ref|YP_003130136.1|	-	0.45	10.0	5.9	2.3	7.7	0.2	2.6	2	0	0	2	2	2	0	Outer	membrane	efflux	protein
Phasin	PF05597.6	gi|257052303|ref|YP_003130136.1|	-	0.82	9.4	8.7	1.1	9.0	0.4	3.9	3	1	2	5	5	5	0	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
Phasin_2	PF09361.5	gi|257052303|ref|YP_003130136.1|	-	1.2	9.2	6.9	9.6	6.3	0.2	3.9	4	1	1	5	5	5	0	Phasin	protein
CorA	PF01544.13	gi|257052303|ref|YP_003130136.1|	-	4.5	6.2	5.1	3	6.8	0.2	2.4	2	1	0	2	2	2	0	CorA-like	Mg2+	transporter	protein
DUF883	PF05957.8	gi|257052303|ref|YP_003130136.1|	-	8.3	6.8	22.4	0.17	12.2	2.2	4.0	2	1	2	4	4	4	0	Bacterial	protein	of	unknown	function	(DUF883)
Aminotran_5	PF00266.14	gi|257052304|ref|YP_003130137.1|	-	3.1e-148	493.4	0.1	3.5e-148	493.2	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-V
DegT_DnrJ_EryC1	PF01041.12	gi|257052304|ref|YP_003130137.1|	-	1.5e-11	44.0	0.5	2.1e-11	43.4	0.4	1.2	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Beta_elim_lyase	PF01212.16	gi|257052304|ref|YP_003130137.1|	-	4.4e-09	35.9	0.2	6.5e-08	32.0	0.2	2.0	1	1	1	2	2	2	1	Beta-eliminating	lyase
Cys_Met_Meta_PP	PF01053.15	gi|257052304|ref|YP_003130137.1|	-	0.00029	19.2	0.0	0.0005	18.4	0.0	1.3	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Pyridoxal_deC	PF00282.14	gi|257052304|ref|YP_003130137.1|	-	0.0051	15.3	0.0	0.012	14.1	0.0	1.5	2	0	0	2	2	2	1	Pyridoxal-dependent	decarboxylase	conserved	domain
TAT_signal	PF10518.4	gi|257052305|ref|YP_003130138.1|	-	0.0017	18.2	0.3	0.0017	18.2	0.2	2.2	2	0	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
TAT_signal	PF10518.4	gi|257052306|ref|YP_003130139.1|	-	0.0028	17.5	2.8	0.0059	16.5	2.0	1.6	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
CHU_C	PF13585.1	gi|257052306|ref|YP_003130139.1|	-	0.0031	17.3	0.4	0.06	13.2	0.2	2.6	2	0	0	2	2	2	1	C-terminal	domain	of	CHU	protein	family
DUF3304	PF11745.3	gi|257052306|ref|YP_003130139.1|	-	0.0066	16.6	0.1	0.015	15.4	0.1	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3304)
COXG	PF06240.8	gi|257052307|ref|YP_003130140.1|	-	2.9e-19	69.1	0.0	3.2e-19	68.9	0.0	1.0	1	0	0	1	1	1	1	Carbon	monoxide	dehydrogenase	subunit	G	(CoxG)
Polyketide_cyc2	PF10604.4	gi|257052307|ref|YP_003130140.1|	-	9.4e-09	35.5	0.1	1.1e-08	35.3	0.1	1.0	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
AHSA1	PF08327.6	gi|257052307|ref|YP_003130140.1|	-	8.4e-05	22.6	0.0	0.00012	22.1	0.0	1.3	1	0	0	1	1	1	1	Activator	of	Hsp90	ATPase	homolog	1-like	protein
Polyketide_cyc	PF03364.15	gi|257052307|ref|YP_003130140.1|	-	0.003	17.5	0.0	0.0088	16.0	0.0	1.7	1	1	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
Flavin_Reduct	PF01613.13	gi|257052308|ref|YP_003130141.1|	-	1.3e-19	70.5	0.0	1.7e-19	70.1	0.0	1.1	1	0	0	1	1	1	1	Flavin	reductase	like	domain
SBP_bac_6	PF13343.1	gi|257052309|ref|YP_003130142.1|	-	2.1e-10	40.3	0.0	3e-10	39.8	0.0	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.20	gi|257052309|ref|YP_003130142.1|	-	0.00056	19.7	1.2	0.0039	16.9	0.1	2.5	2	1	0	2	2	2	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.1	gi|257052309|ref|YP_003130142.1|	-	0.001	18.7	0.0	0.0019	17.8	0.0	1.5	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
BPD_transp_1	PF00528.17	gi|257052310|ref|YP_003130143.1|	-	2.8e-18	66.0	48.4	1.3e-10	41.1	14.3	3.8	2	2	2	4	4	4	2	Binding-protein-dependent	transport	system	inner	membrane	component
Phosphonate-bd	PF12974.2	gi|257052311|ref|YP_003130144.1|	-	1.5e-05	24.5	0.1	3.9e-05	23.1	0.1	1.6	1	1	0	1	1	1	1	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
NMT1	PF09084.6	gi|257052311|ref|YP_003130144.1|	-	0.00013	21.6	0.0	0.0011	18.6	0.0	2.4	2	2	2	4	4	4	1	NMT1/THI5	like
SBP_bac_3	PF00497.15	gi|257052311|ref|YP_003130144.1|	-	0.0017	17.6	0.0	0.003	16.8	0.0	1.4	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	3
NMT1	PF09084.6	gi|257052312|ref|YP_003130145.1|	-	0.0069	16.0	0.0	0.011	15.2	0.0	1.4	1	0	0	1	1	1	1	NMT1/THI5	like
Phosphonate-bd	PF12974.2	gi|257052312|ref|YP_003130145.1|	-	0.011	15.0	0.0	0.016	14.5	0.0	1.2	1	0	0	1	1	1	0	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
ABC_tran	PF00005.22	gi|257052313|ref|YP_003130146.1|	-	1.4e-31	109.6	0.0	1.9e-31	109.1	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|257052313|ref|YP_003130146.1|	-	4.4e-07	30.1	0.1	0.0016	18.5	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
TOBE_2	PF08402.5	gi|257052313|ref|YP_003130146.1|	-	3.9e-05	23.5	0.1	9.5e-05	22.3	0.1	1.7	1	0	0	1	1	1	1	TOBE	domain
AAA_16	PF13191.1	gi|257052313|ref|YP_003130146.1|	-	0.0063	16.5	0.2	0.013	15.5	0.1	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|257052313|ref|YP_003130146.1|	-	0.0066	16.5	0.4	0.034	14.2	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
AAA_23	PF13476.1	gi|257052313|ref|YP_003130146.1|	-	0.027	14.7	0.0	0.046	14.0	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
TOBE	PF03459.12	gi|257052313|ref|YP_003130146.1|	-	0.049	13.7	0.4	0.18	11.9	0.1	2.2	2	0	0	2	2	2	0	TOBE	domain
Rad17	PF03215.10	gi|257052313|ref|YP_003130146.1|	-	0.056	12.1	0.1	0.08	11.6	0.1	1.1	1	0	0	1	1	1	0	Rad17	cell	cycle	checkpoint	protein
AAA_19	PF13245.1	gi|257052313|ref|YP_003130146.1|	-	0.06	13.1	0.9	0.17	11.6	0.6	1.7	1	0	0	1	1	1	0	Part	of	AAA	domain
AAA_29	PF13555.1	gi|257052313|ref|YP_003130146.1|	-	0.079	12.5	0.0	0.16	11.4	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA	PF00004.24	gi|257052313|ref|YP_003130146.1|	-	0.097	12.8	0.2	0.19	11.9	0.2	1.5	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF258	PF03193.11	gi|257052313|ref|YP_003130146.1|	-	0.13	11.3	0.0	0.22	10.6	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
Arch_ATPase	PF01637.13	gi|257052313|ref|YP_003130146.1|	-	0.15	11.7	0.0	0.26	10.9	0.0	1.2	1	0	0	1	1	1	0	Archaeal	ATPase
AAA_17	PF13207.1	gi|257052313|ref|YP_003130146.1|	-	0.39	11.5	2.8	3.4	8.5	2.0	2.4	1	1	0	1	1	1	0	AAA	domain
HTH_24	PF13412.1	gi|257052314|ref|YP_003130147.1|	-	1.2e-07	30.9	1.9	1.2e-05	24.6	0.0	2.8	3	0	0	3	3	3	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.17	gi|257052314|ref|YP_003130147.1|	-	1.6e-06	27.7	0.0	4.4e-06	26.2	0.0	1.8	1	0	0	1	1	1	1	MarR	family
MarR_2	PF12802.2	gi|257052314|ref|YP_003130147.1|	-	2e-05	24.1	1.8	4.3e-05	23.0	0.1	2.3	2	0	0	2	2	2	1	MarR	family
HTH_AsnC-type	PF13404.1	gi|257052314|ref|YP_003130147.1|	-	8e-05	22.0	5.0	0.12	11.9	0.1	3.2	3	0	0	3	3	3	2	AsnC-type	helix-turn-helix	domain
HTH_27	PF13463.1	gi|257052314|ref|YP_003130147.1|	-	0.0032	17.7	0.1	0.013	15.8	0.0	2.1	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.14	gi|257052314|ref|YP_003130147.1|	-	0.012	15.2	0.0	0.043	13.5	0.0	1.8	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_Tnp_Tc3_2	PF01498.13	gi|257052314|ref|YP_003130147.1|	-	0.019	15.0	0.1	2.3	8.3	0.0	2.4	2	0	0	2	2	2	0	Transposase
HTH_23	PF13384.1	gi|257052314|ref|YP_003130147.1|	-	0.06	13.0	0.1	0.24	11.1	0.0	2.1	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_Tnp_ISL3	PF13542.1	gi|257052314|ref|YP_003130147.1|	-	0.066	12.4	0.4	1.8	7.7	0.1	2.5	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	transposase	family	ISL3
Fe_dep_repress	PF01325.14	gi|257052314|ref|YP_003130147.1|	-	0.073	13.0	0.0	0.23	11.4	0.0	1.8	1	1	1	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_11	PF08279.7	gi|257052314|ref|YP_003130147.1|	-	0.074	12.7	0.1	0.53	9.9	0.0	2.1	2	0	0	2	2	2	0	HTH	domain
HTH_32	PF13565.1	gi|257052314|ref|YP_003130147.1|	-	0.08	13.7	4.3	24	5.8	0.0	3.6	3	1	1	4	4	4	0	Homeodomain-like	domain
HTH_38	PF13936.1	gi|257052314|ref|YP_003130147.1|	-	0.12	11.9	0.1	0.54	9.8	0.1	2.1	1	1	0	1	1	1	0	Helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|257052314|ref|YP_003130147.1|	-	0.14	11.7	1.7	0.2	11.2	0.1	1.9	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
DUF387	PF04079.11	gi|257052314|ref|YP_003130147.1|	-	0.18	11.1	1.0	0.93	8.8	0.0	2.3	2	1	1	3	3	3	0	Putative	transcriptional	regulators	(Ypuh-like)
NMT1	PF09084.6	gi|257052315|ref|YP_003130148.1|	-	0.001	18.7	0.0	0.0019	17.8	0.0	1.5	1	0	0	1	1	1	1	NMT1/THI5	like
SBP_bac_3	PF00497.15	gi|257052315|ref|YP_003130148.1|	-	0.0061	15.8	0.0	0.011	14.9	0.0	1.4	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	3
Phosphonate-bd	PF12974.2	gi|257052315|ref|YP_003130148.1|	-	0.036	13.4	0.0	0.094	12.0	0.0	1.6	2	0	0	2	2	2	0	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
TIG	PF01833.19	gi|257052316|ref|YP_003130149.1|	-	3.5e-06	26.9	5.4	0.26	11.3	0.0	5.3	3	2	1	4	4	4	3	IPT/TIG	domain
DoxX	PF07681.7	gi|257052317|ref|YP_003130150.1|	-	2.7e-09	37.2	6.1	6.7e-09	36.0	4.2	1.7	1	1	0	1	1	1	1	DoxX
DoxD	PF04173.8	gi|257052317|ref|YP_003130150.1|	-	0.0027	17.4	4.9	0.032	13.8	0.0	2.2	2	0	0	2	2	2	2	TQO	small	subunit	DoxD
VPEP	PF07589.6	gi|257052317|ref|YP_003130150.1|	-	1.2	9.0	7.9	6.3	6.8	0.5	2.9	2	0	0	2	2	2	0	PEP-CTERM	motif
NUDIX	PF00293.23	gi|257052318|ref|YP_003130151.1|	-	2.8e-15	56.1	0.2	3.8e-15	55.7	0.1	1.1	1	0	0	1	1	1	1	NUDIX	domain
AA_kinase	PF00696.23	gi|257052319|ref|YP_003130152.1|	-	2.5e-50	171.3	5.4	3.4e-50	170.8	1.4	2.0	2	0	0	2	2	2	1	Amino	acid	kinase	family
ACT_7	PF13840.1	gi|257052319|ref|YP_003130152.1|	-	1.1e-15	56.8	0.6	1.1e-08	34.4	0.0	2.6	2	0	0	2	2	2	2	ACT	domain
ACT	PF01842.20	gi|257052319|ref|YP_003130152.1|	-	4.7e-10	38.7	1.4	0.00064	19.1	0.2	2.9	2	0	0	2	2	2	2	ACT	domain
ACT_4	PF13291.1	gi|257052319|ref|YP_003130152.1|	-	0.001	19.3	0.4	0.16	12.3	0.1	2.5	2	0	0	2	2	2	1	ACT	domain
ACT_6	PF13740.1	gi|257052319|ref|YP_003130152.1|	-	0.047	13.4	0.4	2.3	7.9	0.1	2.6	2	0	0	2	2	2	0	ACT	domain
Pyridox_oxidase	PF01243.15	gi|257052319|ref|YP_003130152.1|	-	0.11	12.4	0.0	1.5	8.8	0.0	2.3	2	0	0	2	2	2	0	Pyridoxamine	5'-phosphate	oxidase
SBP_bac_5	PF00496.17	gi|257052320|ref|YP_003130153.1|	-	3e-52	177.6	0.2	1.6e-47	162.1	0.1	2.6	3	0	0	3	3	3	2	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
Toprim_3	PF13362.1	gi|257052320|ref|YP_003130153.1|	-	0.066	13.4	0.0	0.45	10.7	0.0	2.2	2	0	0	2	2	2	0	Toprim	domain
PAP2	PF01569.16	gi|257052321|ref|YP_003130154.1|	-	8.4e-13	48.1	3.1	8.4e-13	48.1	2.1	2.5	3	1	1	4	4	4	1	PAP2	superfamily
PAP2_3	PF14378.1	gi|257052321|ref|YP_003130154.1|	-	5.3e-10	39.1	7.9	1.1e-09	38.0	5.5	1.5	1	0	0	1	1	1	1	PAP2	superfamily
Fer4_14	PF13394.1	gi|257052322|ref|YP_003130155.1|	-	1.7e-05	24.8	0.1	3e-05	24.0	0.1	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Radical_SAM	PF04055.16	gi|257052322|ref|YP_003130155.1|	-	1.8e-05	24.9	0.4	0.00062	19.9	0.3	2.3	1	1	0	1	1	1	1	Radical	SAM	superfamily
Fer4_12	PF13353.1	gi|257052322|ref|YP_003130155.1|	-	0.00023	21.2	0.0	0.00045	20.3	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
DUF1272	PF06906.6	gi|257052323|ref|YP_003130156.1|	-	0.00025	20.8	0.8	0.00029	20.5	0.6	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1272)
zf-C2HC5	PF06221.8	gi|257052323|ref|YP_003130156.1|	-	0.00098	18.8	0.6	0.001	18.7	0.4	1.1	1	0	0	1	1	1	1	Putative	zinc	finger	motif,	C2HC5-type
HypA	PF01155.14	gi|257052323|ref|YP_003130156.1|	-	0.0023	17.6	0.7	0.0024	17.5	0.5	1.1	1	0	0	1	1	1	1	Hydrogenase	expression/synthesis	hypA	family
OrfB_Zn_ribbon	PF07282.6	gi|257052323|ref|YP_003130156.1|	-	0.018	14.6	0.8	0.022	14.4	0.5	1.1	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Zn-ribbon_8	PF09723.5	gi|257052323|ref|YP_003130156.1|	-	0.024	14.5	2.6	1.5	8.7	0.2	2.1	1	1	1	2	2	2	0	Zinc	ribbon	domain
IBR	PF01485.16	gi|257052323|ref|YP_003130156.1|	-	0.044	13.6	0.6	0.058	13.2	0.4	1.2	1	0	0	1	1	1	0	IBR	domain
DZR	PF12773.2	gi|257052323|ref|YP_003130156.1|	-	0.046	13.5	1.6	0.073	12.8	1.1	1.4	1	1	0	1	1	1	0	Double	zinc	ribbon
Desulfoferrod_N	PF06397.7	gi|257052323|ref|YP_003130156.1|	-	0.05	12.9	0.5	0.05	12.9	0.3	1.7	1	1	1	2	2	2	0	Desulfoferrodoxin,	N-terminal	domain
zinc_ribbon_2	PF13240.1	gi|257052323|ref|YP_003130156.1|	-	0.064	12.7	1.7	4	7.0	0.0	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Elf1	PF05129.8	gi|257052323|ref|YP_003130156.1|	-	0.092	12.4	0.6	0.29	10.8	0.4	1.7	1	1	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
RNA_POL_M_15KD	PF02150.11	gi|257052323|ref|YP_003130156.1|	-	0.15	11.7	1.1	3.8	7.2	0.0	2.1	1	1	1	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
Nudix_N_2	PF14803.1	gi|257052323|ref|YP_003130156.1|	-	0.16	11.7	2.2	10	5.9	0.1	2.2	2	0	0	2	2	2	0	Nudix	N-terminal
zf-AN1	PF01428.11	gi|257052323|ref|YP_003130156.1|	-	0.18	11.7	1.8	0.95	9.3	1.3	1.8	1	1	1	2	2	2	0	AN1-like	Zinc	finger
VWA_2	PF13519.1	gi|257052324|ref|YP_003130157.1|	-	1.4e-22	80.6	0.7	4.2e-22	79.0	0.5	1.8	2	0	0	2	2	2	1	von	Willebrand	factor	type	A	domain
VWA	PF00092.23	gi|257052324|ref|YP_003130157.1|	-	3.4e-18	65.9	0.2	6.7e-18	65.0	0.1	1.5	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA_3	PF13768.1	gi|257052324|ref|YP_003130157.1|	-	2.1e-10	40.4	0.3	2.5e-08	33.7	0.0	2.5	2	0	0	2	2	2	2	von	Willebrand	factor	type	A	domain
vWA-TerF-like	PF10138.4	gi|257052324|ref|YP_003130157.1|	-	9.9e-08	32.0	0.6	0.00035	20.4	0.0	2.3	2	0	0	2	2	2	2	vWA	found	in	TerF	C	terminus
VWA_CoxE	PF05762.9	gi|257052324|ref|YP_003130157.1|	-	0.0011	18.1	0.4	0.019	14.1	0.0	2.3	1	1	1	2	2	2	1	VWA	domain	containing	CoxE-like	protein
UPF0020	PF01170.13	gi|257052325|ref|YP_003130158.1|	-	7.5e-29	100.5	0.0	1.2e-28	99.9	0.0	1.3	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Methyltransf_26	PF13659.1	gi|257052325|ref|YP_003130158.1|	-	2.5e-14	53.2	1.7	2.5e-14	53.2	1.2	2.4	2	1	0	2	2	2	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|257052325|ref|YP_003130158.1|	-	1.1e-10	41.2	0.0	1.6e-10	40.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|257052325|ref|YP_003130158.1|	-	8.6e-09	35.9	0.1	1.8e-08	34.8	0.1	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|257052325|ref|YP_003130158.1|	-	5.3e-08	33.2	0.0	1.3e-07	32.0	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Cons_hypoth95	PF03602.10	gi|257052325|ref|YP_003130158.1|	-	1.1e-07	31.4	0.0	2e-07	30.5	0.0	1.4	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
Ubie_methyltran	PF01209.13	gi|257052325|ref|YP_003130158.1|	-	1.6e-05	24.1	0.0	2.5e-05	23.5	0.0	1.2	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_25	PF13649.1	gi|257052325|ref|YP_003130158.1|	-	2.3e-05	24.6	0.0	4.2e-05	23.8	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|257052325|ref|YP_003130158.1|	-	7.2e-05	22.2	0.0	0.00012	21.5	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	small	domain
THUMP	PF02926.12	gi|257052325|ref|YP_003130158.1|	-	7.6e-05	22.6	0.0	0.00012	21.9	0.0	1.3	1	0	0	1	1	1	1	THUMP	domain
Methyltransf_23	PF13489.1	gi|257052325|ref|YP_003130158.1|	-	0.00072	19.3	0.0	0.0018	18.0	0.0	1.7	1	0	0	1	1	1	1	Methyltransferase	domain
N6_Mtase	PF02384.11	gi|257052325|ref|YP_003130158.1|	-	0.014	14.4	0.0	0.029	13.4	0.0	1.5	1	1	0	1	1	1	0	N-6	DNA	Methylase
PCMT	PF01135.14	gi|257052325|ref|YP_003130158.1|	-	0.026	14.0	0.0	0.042	13.3	0.0	1.3	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
TPMT	PF05724.6	gi|257052325|ref|YP_003130158.1|	-	0.043	13.2	0.0	0.07	12.5	0.0	1.3	1	0	0	1	1	1	0	Thiopurine	S-methyltransferase	(TPMT)
PrmA	PF06325.8	gi|257052325|ref|YP_003130158.1|	-	0.11	11.5	0.1	0.18	10.9	0.1	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_15	PF09445.5	gi|257052325|ref|YP_003130158.1|	-	0.19	11.2	0.0	0.25	10.8	0.0	1.2	1	0	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
N6_N4_Mtase	PF01555.13	gi|257052325|ref|YP_003130158.1|	-	0.23	10.9	0.0	0.47	9.9	0.0	1.5	2	0	0	2	2	2	0	DNA	methylase
DUF4072	PF13284.1	gi|257052325|ref|YP_003130158.1|	-	0.66	10.1	6.0	0.35	11.0	0.9	2.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4072)
TBP	PF00352.16	gi|257052326|ref|YP_003130159.1|	-	3e-65	215.5	0.0	6.3e-32	108.7	0.0	2.0	2	0	0	2	2	2	2	Transcription	factor	TFIID	(or	TATA-binding	protein,	TBP)
DUF3378	PF11858.3	gi|257052326|ref|YP_003130159.1|	-	0.0098	15.9	0.0	1.6	8.8	0.0	2.2	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF3378)
CENP-F_C_Rb_bdg	PF10490.4	gi|257052326|ref|YP_003130159.1|	-	0.036	13.3	0.6	8.8	5.7	0.0	2.3	2	0	0	2	2	2	0	Rb-binding	domain	of	kinetochore	protein	Cenp-F/LEK1
EB1	PF03271.12	gi|257052326|ref|YP_003130159.1|	-	0.14	12.2	0.1	0.47	10.5	0.1	1.9	1	1	0	1	1	1	0	EB1-like	C-terminal	motif
SNARE_assoc	PF09335.6	gi|257052327|ref|YP_003130160.1|	-	0.78	9.9	12.6	37	4.5	8.7	2.7	1	1	0	1	1	1	0	SNARE	associated	Golgi	protein
Pyr_redox_2	PF07992.9	gi|257052328|ref|YP_003130161.1|	-	2.4e-24	86.3	0.0	3.8e-24	85.6	0.0	1.3	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|257052328|ref|YP_003130161.1|	-	2.2e-12	47.4	0.9	4.3e-07	30.2	0.0	2.8	2	1	1	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|257052328|ref|YP_003130161.1|	-	1.5e-09	37.2	11.0	0.00021	20.3	0.5	3.1	2	1	0	3	3	3	3	FAD	dependent	oxidoreductase
HI0933_like	PF03486.9	gi|257052328|ref|YP_003130161.1|	-	6.3e-08	31.5	1.0	1.6e-05	23.5	0.3	2.7	2	1	1	3	3	3	2	HI0933-like	protein
Pyr_redox	PF00070.22	gi|257052328|ref|YP_003130161.1|	-	8.8e-07	29.2	1.2	0.00048	20.4	0.1	2.6	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.17	gi|257052328|ref|YP_003130161.1|	-	1.6e-06	27.2	6.3	0.00094	18.1	0.3	3.7	3	1	1	4	4	4	2	Glucose	inhibited	division	protein	A
NAD_binding_8	PF13450.1	gi|257052328|ref|YP_003130161.1|	-	9.3e-06	25.5	0.2	3.5e-05	23.7	0.1	2.0	3	0	0	3	3	2	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_2	PF00890.19	gi|257052328|ref|YP_003130161.1|	-	2.2e-05	23.4	0.9	2.2e-05	23.4	0.6	1.8	2	1	0	2	2	2	1	FAD	binding	domain
Thi4	PF01946.12	gi|257052328|ref|YP_003130161.1|	-	3.3e-05	23.0	0.2	0.00011	21.3	0.1	1.8	2	0	0	2	2	2	1	Thi4	family
FAD_oxidored	PF12831.2	gi|257052328|ref|YP_003130161.1|	-	0.00011	21.4	1.9	0.00017	20.8	1.3	1.3	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
NAD_binding_7	PF13241.1	gi|257052328|ref|YP_003130161.1|	-	0.00021	21.5	0.1	0.047	13.9	0.0	2.3	2	0	0	2	2	2	1	Putative	NAD(P)-binding
NAD_binding_9	PF13454.1	gi|257052328|ref|YP_003130161.1|	-	0.00061	19.5	4.5	0.62	9.8	0.1	3.3	3	0	0	3	3	3	2	FAD-NAD(P)-binding
K_oxygenase	PF13434.1	gi|257052328|ref|YP_003130161.1|	-	0.0022	16.9	0.0	0.56	9.0	0.0	2.1	2	0	0	2	2	2	2	L-lysine	6-monooxygenase	(NADPH-requiring)
FAD_binding_3	PF01494.14	gi|257052328|ref|YP_003130161.1|	-	0.0072	15.4	0.2	0.023	13.7	0.2	1.8	2	0	0	2	2	2	1	FAD	binding	domain
NAD_Gly3P_dh_N	PF01210.18	gi|257052328|ref|YP_003130161.1|	-	0.021	14.5	0.1	2.7	7.7	0.0	2.2	2	0	0	2	2	2	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Lycopene_cycl	PF05834.7	gi|257052328|ref|YP_003130161.1|	-	0.035	13.0	0.1	0.21	10.4	0.1	2.0	2	0	0	2	2	2	0	Lycopene	cyclase	protein
Trp_halogenase	PF04820.9	gi|257052328|ref|YP_003130161.1|	-	1.9	7.0	4.7	0.43	9.1	0.1	2.2	3	0	0	3	3	3	0	Tryptophan	halogenase
PadR	PF03551.9	gi|257052330|ref|YP_003130163.1|	-	1.7e-05	24.5	0.0	3e-05	23.6	0.0	1.5	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
FUR	PF01475.14	gi|257052330|ref|YP_003130163.1|	-	3.8e-05	23.5	0.0	7e-05	22.7	0.0	1.4	1	0	0	1	1	1	1	Ferric	uptake	regulator	family
DUF2513	PF10711.4	gi|257052330|ref|YP_003130163.1|	-	0.00047	20.1	0.0	0.00086	19.3	0.0	1.3	1	1	0	1	1	1	1	Hypothetical	protein	(DUF2513)
HTH_20	PF12840.2	gi|257052330|ref|YP_003130163.1|	-	0.00097	18.8	0.0	0.0021	17.8	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.14	gi|257052330|ref|YP_003130163.1|	-	0.0013	18.3	0.0	0.0041	16.7	0.0	1.8	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|257052330|ref|YP_003130163.1|	-	0.0045	16.6	0.0	0.0098	15.5	0.0	1.6	1	1	0	1	1	1	1	MarR	family
HTH_11	PF08279.7	gi|257052330|ref|YP_003130163.1|	-	0.008	15.8	0.0	0.015	14.9	0.0	1.5	1	1	0	1	1	1	1	HTH	domain
MarR	PF01047.17	gi|257052330|ref|YP_003130163.1|	-	0.028	14.1	0.0	0.081	12.6	0.0	1.7	1	1	0	1	1	1	0	MarR	family
HTH_24	PF13412.1	gi|257052330|ref|YP_003130163.1|	-	0.036	13.4	0.1	0.13	11.7	0.0	1.9	3	0	0	3	3	3	0	Winged	helix-turn-helix	DNA-binding
HTH_34	PF13601.1	gi|257052330|ref|YP_003130163.1|	-	0.043	13.8	0.0	0.084	12.9	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
YjcQ	PF09639.5	gi|257052330|ref|YP_003130163.1|	-	0.053	13.6	0.0	0.1	12.6	0.0	1.4	1	1	0	1	1	1	0	YjcQ	protein
HTH_27	PF13463.1	gi|257052330|ref|YP_003130163.1|	-	0.079	13.2	0.0	0.13	12.5	0.0	1.6	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_29	PF13551.1	gi|257052330|ref|YP_003130163.1|	-	0.097	12.8	0.0	0.34	11.0	0.0	1.8	1	1	1	2	2	2	0	Winged	helix-turn	helix
HTH_5	PF01022.15	gi|257052330|ref|YP_003130163.1|	-	0.1	12.3	0.0	0.18	11.5	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
DUF86	PF01934.12	gi|257052330|ref|YP_003130163.1|	-	0.12	12.0	0.0	0.31	10.6	0.0	1.6	1	1	0	2	2	2	0	Protein	of	unknown	function	DUF86
RNA_pol_Rpc34	PF05158.7	gi|257052330|ref|YP_003130163.1|	-	0.12	11.4	0.0	0.18	10.9	0.0	1.2	1	0	0	1	1	1	0	RNA	polymerase	Rpc34	subunit
AstE_AspA	PF04952.9	gi|257052331|ref|YP_003130164.1|	-	5.1e-59	199.5	0.0	5.8e-59	199.3	0.0	1.0	1	0	0	1	1	1	1	Succinylglutamate	desuccinylase	/	Aspartoacylase	family
ABM	PF03992.11	gi|257052332|ref|YP_003130165.1|	-	9.4e-16	57.6	0.3	1.3e-15	57.1	0.2	1.2	1	0	0	1	1	1	1	Antibiotic	biosynthesis	monooxygenase
Multi_ubiq	PF14452.1	gi|257052332|ref|YP_003130165.1|	-	0.051	13.5	0.1	0.074	13.0	0.1	1.3	1	0	0	1	1	1	0	Multiubiquitin
Dabb	PF07876.7	gi|257052332|ref|YP_003130165.1|	-	0.098	13.1	0.1	0.12	12.8	0.1	1.1	1	0	0	1	1	1	0	Stress	responsive	A/B	Barrel	Domain
Orthoreo_P10	PF07204.6	gi|257052333|ref|YP_003130166.1|	-	0.014	15.1	0.0	0.022	14.4	0.0	1.4	1	0	0	1	1	1	0	Orthoreovirus	membrane	fusion	protein	p10
DPM3	PF08285.6	gi|257052333|ref|YP_003130166.1|	-	1.2	9.0	4.7	0.57	10.0	1.0	2.1	2	1	0	2	2	2	0	Dolichol-phosphate	mannosyltransferase	subunit	3	(DPM3)
DUF575	PF04746.7	gi|257052333|ref|YP_003130166.1|	-	2.2	8.3	5.7	4.2	7.4	0.7	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF575)
Tad	PF13400.1	gi|257052333|ref|YP_003130166.1|	-	6.1	6.9	19.2	2	8.4	1.4	4.0	4	0	0	4	4	4	0	Putative	Flp	pilus-assembly	TadE/G-like
Fst_toxin	PF13955.1	gi|257052333|ref|YP_003130166.1|	-	9.1	6.0	7.5	39	4.0	5.2	2.2	1	0	0	1	1	1	0	Toxin	Fst,	type	I	toxin-antitoxin	system
DoxX	PF07681.7	gi|257052334|ref|YP_003130167.1|	-	6.9e-10	39.2	35.6	1.2e-09	38.4	5.2	4.1	3	1	0	3	3	3	2	DoxX
DoxD	PF04173.8	gi|257052334|ref|YP_003130167.1|	-	0.0098	15.5	16.6	0.21	11.2	2.3	3.6	2	2	1	3	3	3	2	TQO	small	subunit	DoxD
PALP	PF00291.20	gi|257052335|ref|YP_003130168.1|	-	9.1e-57	192.5	1.5	1e-56	192.4	1.0	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
MCPsignal	PF00015.16	gi|257052336|ref|YP_003130169.1|	-	1.3e-42	145.8	59.5	2.3e-41	141.6	24.8	3.1	1	1	1	2	2	2	1	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
PAS_4	PF08448.5	gi|257052336|ref|YP_003130169.1|	-	6.1e-12	45.5	1.3	3e-11	43.3	0.1	2.7	2	0	0	2	2	2	1	PAS	fold
PAS_9	PF13426.1	gi|257052336|ref|YP_003130169.1|	-	1.6e-11	44.4	0.0	5.3e-11	42.8	0.0	1.9	1	0	0	1	1	1	1	PAS	domain
PAS	PF00989.19	gi|257052336|ref|YP_003130169.1|	-	1e-05	25.2	0.1	5.2e-05	23.0	0.0	2.3	2	0	0	2	2	1	1	PAS	fold
PAS_10	PF13596.1	gi|257052336|ref|YP_003130169.1|	-	0.00024	21.3	0.0	0.0046	17.1	0.0	2.9	2	1	0	3	3	2	1	PAS	domain
NPV_P10	PF05531.7	gi|257052336|ref|YP_003130169.1|	-	0.0012	19.0	25.4	0.12	12.6	0.6	5.9	4	1	2	6	6	6	2	Nucleopolyhedrovirus	P10	protein
AAA_13	PF13166.1	gi|257052336|ref|YP_003130169.1|	-	0.0032	16.0	20.0	0.052	12.0	2.6	2.2	1	1	1	2	2	2	2	AAA	domain
Atg14	PF10186.4	gi|257052336|ref|YP_003130169.1|	-	0.0036	16.3	3.2	0.021	13.7	0.4	2.3	1	1	1	2	2	2	1	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
DUF948	PF06103.6	gi|257052336|ref|YP_003130169.1|	-	0.0091	15.8	24.9	0.061	13.1	1.4	5.6	2	2	1	5	5	5	1	Bacterial	protein	of	unknown	function	(DUF948)
PPE	PF00823.14	gi|257052336|ref|YP_003130169.1|	-	0.021	14.6	0.5	0.021	14.6	0.3	4.5	2	1	3	5	5	4	0	PPE	family
Sec8_exocyst	PF04048.9	gi|257052336|ref|YP_003130169.1|	-	0.04	13.5	11.1	1.5	8.4	0.6	4.4	3	2	3	6	6	6	0	Sec8	exocyst	complex	component	specific	domain
BLOC1_2	PF10046.4	gi|257052336|ref|YP_003130169.1|	-	0.061	13.4	19.9	0.83	9.8	1.9	6.2	3	2	2	7	7	7	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Hormone_1	PF00103.15	gi|257052336|ref|YP_003130169.1|	-	0.073	12.4	2.9	8.7	5.6	0.1	3.3	2	2	0	3	3	3	0	Somatotropin	hormone	family
Laminin_II	PF06009.7	gi|257052336|ref|YP_003130169.1|	-	0.073	12.8	36.8	0.059	13.1	3.2	5.4	3	2	3	6	6	6	0	Laminin	Domain	II
PAS_8	PF13188.1	gi|257052336|ref|YP_003130169.1|	-	0.079	12.8	0.0	0.32	10.9	0.0	2.1	1	0	0	1	1	1	0	PAS	domain
Mod_r	PF07200.8	gi|257052336|ref|YP_003130169.1|	-	0.082	12.8	6.1	4	7.3	0.1	4.2	2	2	1	4	4	4	0	Modifier	of	rudimentary	(Mod(r))	protein
FH2	PF02181.18	gi|257052336|ref|YP_003130169.1|	-	0.097	11.5	7.6	0.31	9.8	0.6	2.8	2	1	0	2	2	2	0	Formin	Homology	2	Domain
Laminin_I	PF06008.9	gi|257052336|ref|YP_003130169.1|	-	0.14	11.4	29.7	0.21	10.8	11.6	4.2	1	1	2	4	4	4	0	Laminin	Domain	I
THOC7	PF05615.8	gi|257052336|ref|YP_003130169.1|	-	0.14	12.4	7.6	0.22	11.8	2.3	3.2	1	1	1	2	2	2	0	Tho	complex	subunit	7
IncA	PF04156.9	gi|257052336|ref|YP_003130169.1|	-	0.15	11.6	13.3	62	3.1	8.8	3.5	1	1	1	2	2	2	0	IncA	protein
HAMP	PF00672.20	gi|257052336|ref|YP_003130169.1|	-	0.15	12.2	7.3	0.46	10.6	0.4	4.1	3	0	0	3	3	3	0	HAMP	domain
FlaC_arch	PF05377.6	gi|257052336|ref|YP_003130169.1|	-	0.19	11.6	9.5	4.6	7.2	0.0	5.2	4	1	0	5	5	5	0	Flagella	accessory	protein	C	(FlaC)
Fib_alpha	PF08702.5	gi|257052336|ref|YP_003130169.1|	-	0.35	11.0	9.4	5.5	7.1	1.4	4.0	2	2	3	5	5	5	0	Fibrinogen	alpha/beta	chain	family
DUF2450	PF10475.4	gi|257052336|ref|YP_003130169.1|	-	0.53	9.1	2.9	7.7	5.3	0.0	2.8	3	0	0	3	3	3	0	Protein	of	unknown	function	N-terminal	domain	(DUF2450)
CK2S	PF15011.1	gi|257052336|ref|YP_003130169.1|	-	0.98	9.1	6.6	14	5.4	0.0	4.1	3	1	2	5	5	5	0	Casein	Kinase	2	substrate
Spc7	PF08317.6	gi|257052336|ref|YP_003130169.1|	-	1.2	7.7	14.9	1.3	7.6	3.4	3.2	1	1	2	4	4	4	0	Spc7	kinetochore	protein
Synaptobrevin	PF00957.16	gi|257052336|ref|YP_003130169.1|	-	1.2	8.7	8.5	0.25	10.9	0.8	3.1	2	1	0	3	3	3	0	Synaptobrevin
ING	PF12998.2	gi|257052336|ref|YP_003130169.1|	-	1.3	9.3	4.5	5.3	7.3	0.7	3.0	2	1	1	3	3	2	0	Inhibitor	of	growth	proteins	N-terminal	histone-binding
Tropomyosin	PF00261.15	gi|257052336|ref|YP_003130169.1|	-	1.5	7.8	35.5	0.065	12.3	6.3	3.2	2	1	1	3	3	3	0	Tropomyosin
DUF1664	PF07889.7	gi|257052336|ref|YP_003130169.1|	-	1.5	8.6	18.6	5.4	6.8	3.5	4.7	2	2	3	5	5	5	0	Protein	of	unknown	function	(DUF1664)
CorA	PF01544.13	gi|257052336|ref|YP_003130169.1|	-	2.5	7.0	10.4	14	4.6	4.7	2.9	1	1	0	2	2	2	0	CorA-like	Mg2+	transporter	protein
TMPIT	PF07851.8	gi|257052336|ref|YP_003130169.1|	-	2.6	7.0	5.4	1.9	7.5	1.0	2.5	2	1	1	3	3	3	0	TMPIT-like	protein
Barstar	PF01337.13	gi|257052336|ref|YP_003130169.1|	-	3.2	7.6	5.8	5.1	7.0	0.1	4.0	2	2	2	5	5	5	0	Barstar	(barnase	inhibitor)
DUF4200	PF13863.1	gi|257052336|ref|YP_003130169.1|	-	4.9	7.1	9.3	5	7.0	0.5	3.6	3	1	1	4	4	3	0	Domain	of	unknown	function	(DUF4200)
CENP-F_leu_zip	PF10473.4	gi|257052336|ref|YP_003130169.1|	-	5.8	6.7	17.9	0.12	12.2	4.6	3.6	3	2	1	4	4	3	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
SNARE	PF05739.14	gi|257052336|ref|YP_003130169.1|	-	7.1	6.4	13.3	18	5.0	1.0	5.5	2	2	1	4	4	4	0	SNARE	domain
SRP54	PF00448.17	gi|257052337|ref|YP_003130170.1|	-	2.5e-62	209.8	0.1	3.7e-62	209.2	0.0	1.3	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
SRP_SPB	PF02978.14	gi|257052337|ref|YP_003130170.1|	-	2.4e-28	98.4	6.8	2.4e-28	98.4	4.7	2.9	2	1	0	3	3	3	1	Signal	peptide	binding	domain
SRP54_N	PF02881.14	gi|257052337|ref|YP_003130170.1|	-	1.5e-13	50.6	0.1	4.8e-13	49.0	0.0	1.9	1	0	0	1	1	1	1	SRP54-type	protein,	helical	bundle	domain
CbiA	PF01656.18	gi|257052337|ref|YP_003130170.1|	-	0.00032	20.1	0.3	0.0017	17.8	0.2	2.3	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
cobW	PF02492.14	gi|257052337|ref|YP_003130170.1|	-	0.00088	18.7	0.7	0.0095	15.3	0.5	2.3	1	1	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
MobB	PF03205.9	gi|257052337|ref|YP_003130170.1|	-	0.0038	16.9	0.0	0.009	15.7	0.0	1.6	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Zeta_toxin	PF06414.7	gi|257052337|ref|YP_003130170.1|	-	0.0045	16.1	0.0	0.011	14.8	0.0	1.7	1	0	0	1	1	1	1	Zeta	toxin
AAA_17	PF13207.1	gi|257052337|ref|YP_003130170.1|	-	0.0077	17.0	1.0	0.027	15.2	0.2	2.3	2	1	0	2	2	1	1	AAA	domain
SMC_N	PF02463.14	gi|257052337|ref|YP_003130170.1|	-	0.0086	15.3	0.0	0.014	14.6	0.0	1.3	1	0	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_19	PF13245.1	gi|257052337|ref|YP_003130170.1|	-	0.012	15.2	0.0	0.065	12.9	0.0	2.3	2	1	0	2	2	2	0	Part	of	AAA	domain
AAA_10	PF12846.2	gi|257052337|ref|YP_003130170.1|	-	0.023	14.1	2.0	0.041	13.3	1.4	1.7	1	1	0	1	1	1	0	AAA-like	domain
AAA_33	PF13671.1	gi|257052337|ref|YP_003130170.1|	-	0.025	14.4	0.0	0.053	13.4	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_22	PF13401.1	gi|257052337|ref|YP_003130170.1|	-	0.032	14.3	0.0	0.13	12.3	0.0	2.1	2	0	0	2	2	1	0	AAA	domain
KTI12	PF08433.5	gi|257052337|ref|YP_003130170.1|	-	0.034	13.3	0.0	0.07	12.3	0.0	1.5	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
APS_kinase	PF01583.15	gi|257052337|ref|YP_003130170.1|	-	0.044	13.4	0.0	0.085	12.5	0.0	1.5	1	0	0	1	1	1	0	Adenylylsulphate	kinase
AAA_16	PF13191.1	gi|257052337|ref|YP_003130170.1|	-	0.051	13.5	0.5	0.15	12.0	0.1	1.9	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_23	PF13476.1	gi|257052337|ref|YP_003130170.1|	-	0.055	13.7	0.0	0.095	13.0	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
ArsA_ATPase	PF02374.10	gi|257052337|ref|YP_003130170.1|	-	0.056	12.4	0.0	0.056	12.4	0.0	3.0	3	0	0	3	3	3	0	Anion-transporting	ATPase
Thymidylate_kin	PF02223.12	gi|257052337|ref|YP_003130170.1|	-	0.098	12.0	0.0	0.23	10.8	0.0	1.6	1	0	0	1	1	1	0	Thymidylate	kinase
PRK	PF00485.13	gi|257052337|ref|YP_003130170.1|	-	0.11	12.0	0.0	0.34	10.4	0.0	1.9	2	0	0	2	2	2	0	Phosphoribulokinase	/	Uridine	kinase	family
AAA_25	PF13481.1	gi|257052337|ref|YP_003130170.1|	-	0.22	10.8	6.2	0.18	11.1	1.3	2.6	2	1	0	2	2	2	0	AAA	domain
NACHT	PF05729.7	gi|257052337|ref|YP_003130170.1|	-	0.32	10.6	1.2	0.64	9.6	0.1	2.1	2	0	0	2	2	2	0	NACHT	domain
AAA_28	PF13521.1	gi|257052337|ref|YP_003130170.1|	-	0.38	10.6	3.5	17	5.2	0.3	3.3	2	1	1	3	3	3	0	AAA	domain
SpoIIAA-like	PF11964.3	gi|257052337|ref|YP_003130170.1|	-	0.69	10.2	0.1	0.69	10.2	0.0	3.4	4	1	0	4	4	3	0	SpoIIAA-like
ABC_tran	PF00005.22	gi|257052338|ref|YP_003130171.1|	-	2.5e-36	124.9	0.0	4.6e-36	124.1	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
ABC_membrane	PF00664.18	gi|257052338|ref|YP_003130171.1|	-	4.4e-36	124.7	5.9	6.5e-36	124.1	4.1	1.3	1	0	0	1	1	1	1	ABC	transporter	transmembrane	region
Zeta_toxin	PF06414.7	gi|257052338|ref|YP_003130171.1|	-	1.4e-05	24.2	0.0	2.9e-05	23.2	0.0	1.5	1	0	0	1	1	1	1	Zeta	toxin
AAA_21	PF13304.1	gi|257052338|ref|YP_003130171.1|	-	3.3e-05	24.0	0.0	0.00094	19.2	0.0	2.5	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|257052338|ref|YP_003130171.1|	-	0.0001	22.3	0.0	0.0002	21.3	0.0	1.4	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_17	PF13207.1	gi|257052338|ref|YP_003130171.1|	-	0.00022	22.0	0.4	0.0011	19.7	0.3	2.3	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|257052338|ref|YP_003130171.1|	-	0.00024	21.2	0.1	0.0013	18.9	0.1	2.1	1	1	0	1	1	1	1	AAA	domain
DUF258	PF03193.11	gi|257052338|ref|YP_003130171.1|	-	0.00029	20.0	0.0	0.00054	19.1	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
SMC_N	PF02463.14	gi|257052338|ref|YP_003130171.1|	-	0.0004	19.6	0.7	0.023	13.9	0.1	2.1	1	1	1	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.1	gi|257052338|ref|YP_003130171.1|	-	0.0019	17.6	0.0	0.0059	16.1	0.0	1.8	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_18	PF13238.1	gi|257052338|ref|YP_003130171.1|	-	0.0027	18.0	0.0	0.0094	16.2	0.0	2.0	1	0	0	1	1	1	1	AAA	domain
AAA	PF00004.24	gi|257052338|ref|YP_003130171.1|	-	0.0063	16.7	0.0	0.04	14.1	0.0	2.2	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_30	PF13604.1	gi|257052338|ref|YP_003130171.1|	-	0.011	15.2	0.5	0.051	13.1	0.4	2.0	1	1	0	1	1	1	0	AAA	domain
AAA_33	PF13671.1	gi|257052338|ref|YP_003130171.1|	-	0.02	14.7	0.0	0.048	13.5	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
AAA_10	PF12846.2	gi|257052338|ref|YP_003130171.1|	-	0.022	14.1	0.0	0.086	12.2	0.0	1.8	2	0	0	2	2	2	0	AAA-like	domain
ABC_membrane_3	PF13748.1	gi|257052338|ref|YP_003130171.1|	-	0.032	13.2	1.2	4.7	6.1	0.1	2.2	2	0	0	2	2	2	0	ABC	transporter	transmembrane	region
DUF87	PF01935.12	gi|257052338|ref|YP_003130171.1|	-	0.041	13.7	0.0	0.11	12.2	0.0	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF87
AAA_25	PF13481.1	gi|257052338|ref|YP_003130171.1|	-	0.052	12.9	0.1	0.11	11.8	0.1	1.6	1	1	0	1	1	1	0	AAA	domain
UPF0079	PF02367.12	gi|257052338|ref|YP_003130171.1|	-	0.057	13.0	0.0	0.13	11.9	0.0	1.5	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_5	PF07728.9	gi|257052338|ref|YP_003130171.1|	-	0.06	13.0	0.1	0.49	10.1	0.0	2.3	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
Guanylate_kin	PF00625.16	gi|257052338|ref|YP_003130171.1|	-	0.061	12.7	0.2	0.29	10.5	0.1	2.0	1	1	0	1	1	1	0	Guanylate	kinase
AAA_14	PF13173.1	gi|257052338|ref|YP_003130171.1|	-	0.064	13.1	0.0	0.21	11.4	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
MobB	PF03205.9	gi|257052338|ref|YP_003130171.1|	-	0.075	12.7	0.0	0.19	11.4	0.0	1.7	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
T2SE	PF00437.15	gi|257052338|ref|YP_003130171.1|	-	0.076	11.9	0.1	0.59	8.9	0.0	2.0	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
MMR_HSR1	PF01926.18	gi|257052338|ref|YP_003130171.1|	-	0.087	12.7	0.0	0.26	11.2	0.0	1.8	2	0	0	2	2	1	0	50S	ribosome-binding	GTPase
AAA_23	PF13476.1	gi|257052338|ref|YP_003130171.1|	-	0.1	12.9	0.0	0.22	11.8	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
HupE_UreJ_2	PF13795.1	gi|257052339|ref|YP_003130172.1|	-	0.016	14.6	0.4	0.018	14.5	0.3	1.1	1	0	0	1	1	1	0	HupE	/	UreJ	protein
AzlD	PF05437.7	gi|257052339|ref|YP_003130172.1|	-	0.031	14.2	0.3	0.034	14.0	0.2	1.1	1	0	0	1	1	1	0	Branched-chain	amino	acid	transport	protein	(AzlD)
PDT	PF00800.13	gi|257052340|ref|YP_003130173.1|	-	2.1e-47	160.9	1.1	2.6e-47	160.7	0.7	1.1	1	0	0	1	1	1	1	Prephenate	dehydratase
ACT	PF01842.20	gi|257052340|ref|YP_003130173.1|	-	1.1e-06	27.9	0.0	4e-06	26.1	0.0	2.0	1	0	0	1	1	1	1	ACT	domain
Pkinase	PF00069.20	gi|257052341|ref|YP_003130174.1|	-	2.1e-05	23.8	0.0	3e-05	23.3	0.0	1.2	1	0	0	1	1	1	1	Protein	kinase	domain
Pkinase_Tyr	PF07714.12	gi|257052341|ref|YP_003130174.1|	-	7.8e-05	21.8	0.0	0.00011	21.4	0.0	1.3	1	0	0	1	1	1	1	Protein	tyrosine	kinase
Kinase-like	PF14531.1	gi|257052341|ref|YP_003130174.1|	-	0.03	13.2	0.0	0.044	12.7	0.0	1.2	1	0	0	1	1	1	0	Kinase-like
RHH_1	PF01402.16	gi|257052343|ref|YP_003130176.1|	-	3.1e-05	23.6	0.2	0.00011	21.9	0.0	1.9	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
SHOCT	PF09851.4	gi|257052345|ref|YP_003130178.1|	-	7.5e-06	25.2	1.0	1.3e-05	24.4	0.7	1.3	1	0	0	1	1	1	1	Short	C-terminal	domain
DUF1707	PF08044.6	gi|257052345|ref|YP_003130178.1|	-	0.0029	17.2	0.1	0.0051	16.5	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1707)
GvpG	PF05120.7	gi|257052345|ref|YP_003130178.1|	-	0.03	14.1	1.2	0.044	13.5	0.9	1.3	1	0	0	1	1	1	0	Gas	vesicle	protein	G
DUF1212	PF06738.7	gi|257052345|ref|YP_003130178.1|	-	0.093	12.1	4.5	0.59	9.5	0.9	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1212)
Cpn60_TCP1	PF00118.19	gi|257052346|ref|YP_003130179.1|	-	4.2e-163	543.4	8.1	4.8e-163	543.2	5.6	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
P-II	PF00543.17	gi|257052346|ref|YP_003130179.1|	-	0.11	12.9	2.9	2.5	8.6	0.0	3.7	3	0	0	3	3	3	0	Nitrogen	regulatory	protein	P-II
CoA_binding_2	PF13380.1	gi|257052346|ref|YP_003130179.1|	-	0.12	12.5	1.3	3	8.0	0.1	2.9	2	0	0	2	2	2	0	CoA	binding	domain
AAA_22	PF13401.1	gi|257052347|ref|YP_003130180.1|	-	3.1e-13	50.0	0.1	1.5e-12	47.7	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
KH_1	PF00013.24	gi|257052348|ref|YP_003130181.1|	-	2.8e-19	68.5	1.9	5.4e-10	38.7	0.1	2.2	2	0	0	2	2	2	2	KH	domain
KH_3	PF13014.1	gi|257052348|ref|YP_003130181.1|	-	4.9e-09	35.6	0.7	5.7e-05	22.6	0.0	2.5	2	0	0	2	2	2	2	KH	domain
KH_2	PF07650.12	gi|257052348|ref|YP_003130181.1|	-	4.2e-06	26.2	1.0	0.00037	20.0	0.1	2.6	2	1	0	2	2	2	2	KH	domain
KH_4	PF13083.1	gi|257052348|ref|YP_003130181.1|	-	0.028	14.0	2.2	2.7	7.6	0.2	2.9	2	1	1	3	3	3	0	KH	domain
Rad51	PF08423.6	gi|257052349|ref|YP_003130182.1|	-	1.3e-81	273.2	0.1	2.2e-47	161.1	0.0	2.0	2	0	0	2	2	2	2	Rad51
HHH_5	PF14520.1	gi|257052349|ref|YP_003130182.1|	-	4.6e-11	42.7	0.2	2.1e-10	40.5	0.1	2.2	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
AAA_25	PF13481.1	gi|257052349|ref|YP_003130182.1|	-	9.8e-08	31.6	0.2	4.5e-07	29.4	0.1	1.9	1	1	0	1	1	1	1	AAA	domain
HHH	PF00633.18	gi|257052349|ref|YP_003130182.1|	-	2.2e-07	30.1	0.4	3.1e-05	23.4	0.1	2.6	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
RecA	PF00154.16	gi|257052349|ref|YP_003130182.1|	-	2.9e-07	29.8	0.0	0.0055	15.8	0.0	2.1	2	0	0	2	2	2	2	recA	bacterial	DNA	recombination	protein
HHH_2	PF12826.2	gi|257052349|ref|YP_003130182.1|	-	0.00015	21.6	0.0	0.0004	20.2	0.0	1.8	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
KaiC	PF06745.8	gi|257052349|ref|YP_003130182.1|	-	0.00024	20.2	0.3	0.00052	19.2	0.2	1.7	1	1	1	2	2	2	1	KaiC
Cdd1	PF11731.3	gi|257052349|ref|YP_003130182.1|	-	0.0016	18.3	0.0	0.0045	16.8	0.0	1.8	2	0	0	2	2	2	1	Pathogenicity	locus
IMS_HHH	PF11798.3	gi|257052349|ref|YP_003130182.1|	-	0.0056	16.6	0.0	0.021	14.8	0.0	2.0	2	0	0	2	2	2	1	IMS	family	HHH	motif
AAA_22	PF13401.1	gi|257052349|ref|YP_003130182.1|	-	0.012	15.7	0.2	0.05	13.7	0.1	2.0	1	1	0	1	1	1	0	AAA	domain
DNA_pol_lambd_f	PF10391.4	gi|257052349|ref|YP_003130182.1|	-	0.044	13.3	0.0	0.18	11.3	0.0	2.1	1	1	0	1	1	1	0	Fingers	domain	of	DNA	polymerase	lambda
HHH_8	PF14716.1	gi|257052349|ref|YP_003130182.1|	-	0.066	13.4	0.0	0.25	11.5	0.0	2.1	2	0	0	2	2	2	0	Helix-hairpin-helix	domain
HHH_3	PF12836.2	gi|257052349|ref|YP_003130182.1|	-	0.093	12.6	0.0	5	7.1	0.0	2.4	2	0	0	2	2	2	0	Helix-hairpin-helix	motif
LrgB	PF04172.11	gi|257052350|ref|YP_003130183.1|	-	0.0055	15.8	1.1	0.0061	15.7	0.8	1.1	1	0	0	1	1	1	1	LrgB-like	family
Na_sulph_symp	PF00939.14	gi|257052350|ref|YP_003130183.1|	-	0.083	11.7	3.6	0.093	11.5	2.5	1.0	1	0	0	1	1	1	0	Sodium:sulfate	symporter	transmembrane	region
DUF4407	PF14362.1	gi|257052350|ref|YP_003130183.1|	-	3.4	6.5	7.6	3.8	6.3	5.3	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
CbtB	PF09489.5	gi|257052350|ref|YP_003130183.1|	-	5.4	7.0	7.7	0.42	10.5	1.0	2.4	2	1	1	3	3	3	0	Probable	cobalt	transporter	subunit	(CbtB)
AsnC_trans_reg	PF01037.16	gi|257052351|ref|YP_003130184.1|	-	7.8e-09	35.1	0.1	8.6e-09	34.9	0.1	1.0	1	0	0	1	1	1	1	AsnC	family
TrkA_N	PF02254.13	gi|257052352|ref|YP_003130185.1|	-	2.4e-23	82.3	0.0	3.4e-23	81.8	0.0	1.2	1	0	0	1	1	1	1	TrkA-N	domain
TrkA_C	PF02080.16	gi|257052352|ref|YP_003130185.1|	-	1.2e-08	34.3	0.1	2.7e-08	33.3	0.1	1.6	1	0	0	1	1	1	1	TrkA-C	domain
DAO	PF01266.19	gi|257052352|ref|YP_003130185.1|	-	1.4e-05	24.2	0.0	1.5e-05	24.0	0.0	1.2	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
UDPG_MGDP_dh_N	PF03721.9	gi|257052352|ref|YP_003130185.1|	-	5.6e-05	22.5	0.0	9.4e-05	21.8	0.0	1.4	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Pyr_redox_2	PF07992.9	gi|257052352|ref|YP_003130185.1|	-	6e-05	23.0	0.0	0.00015	21.6	0.0	1.8	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.14	gi|257052352|ref|YP_003130185.1|	-	8.1e-05	21.8	0.1	9.9e-05	21.5	0.0	1.2	1	0	0	1	1	1	1	FAD	binding	domain
NAD_binding_7	PF13241.1	gi|257052352|ref|YP_003130185.1|	-	8.2e-05	22.8	0.0	0.00018	21.6	0.0	1.6	2	0	0	2	2	1	1	Putative	NAD(P)-binding
NAD_binding_10	PF13460.1	gi|257052352|ref|YP_003130185.1|	-	0.00035	20.6	0.9	0.00068	19.6	0.3	1.7	1	1	1	2	2	2	1	NADH(P)-binding
Pyr_redox	PF00070.22	gi|257052352|ref|YP_003130185.1|	-	0.00056	20.2	0.1	0.0011	19.3	0.1	1.5	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
ApbA	PF02558.11	gi|257052352|ref|YP_003130185.1|	-	0.0011	18.4	0.0	0.0017	17.8	0.0	1.3	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
3HCDH_N	PF02737.13	gi|257052352|ref|YP_003130185.1|	-	0.0013	18.4	0.1	0.0025	17.5	0.0	1.6	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
AlaDh_PNT_C	PF01262.16	gi|257052352|ref|YP_003130185.1|	-	0.0016	17.9	0.1	0.0027	17.2	0.1	1.3	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
CPSase_L_chain	PF00289.17	gi|257052352|ref|YP_003130185.1|	-	0.0018	18.3	0.0	0.0034	17.4	0.0	1.6	1	1	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	N-terminal	domain
NAD_binding_8	PF13450.1	gi|257052352|ref|YP_003130185.1|	-	0.002	18.1	0.1	0.004	17.1	0.1	1.5	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
AdoHcyase_NAD	PF00670.16	gi|257052352|ref|YP_003130185.1|	-	0.002	17.9	0.0	0.0068	16.2	0.0	1.8	2	0	0	2	2	2	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
FAD_binding_2	PF00890.19	gi|257052352|ref|YP_003130185.1|	-	0.0034	16.2	0.0	0.0038	16.1	0.0	1.3	1	0	0	1	1	1	1	FAD	binding	domain
adh_short	PF00106.20	gi|257052352|ref|YP_003130185.1|	-	0.0059	16.5	0.9	0.0091	15.9	0.5	1.5	1	1	0	1	1	1	1	short	chain	dehydrogenase
2-Hacid_dh_C	PF02826.14	gi|257052352|ref|YP_003130185.1|	-	0.015	14.4	0.0	0.024	13.7	0.0	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Rossmann-like	PF10727.4	gi|257052352|ref|YP_003130185.1|	-	0.019	14.7	0.1	0.088	12.5	0.0	2.1	2	0	0	2	2	2	0	Rossmann-like	domain
IlvN	PF07991.7	gi|257052352|ref|YP_003130185.1|	-	0.043	13.1	0.0	0.068	12.5	0.0	1.4	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
Glyco_trans_4_4	PF13579.1	gi|257052352|ref|YP_003130185.1|	-	0.058	13.5	0.8	0.17	12.0	0.4	1.9	1	1	0	1	1	1	0	Glycosyl	transferase	4-like	domain
XdhC_C	PF13478.1	gi|257052352|ref|YP_003130185.1|	-	0.082	13.2	0.0	0.17	12.1	0.0	1.6	2	0	0	2	2	1	0	XdhC	Rossmann	domain
NAD_binding_2	PF03446.10	gi|257052352|ref|YP_003130185.1|	-	0.087	12.6	0.0	0.74	9.6	0.0	2.0	2	0	0	2	2	2	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NAD_Gly3P_dh_N	PF01210.18	gi|257052352|ref|YP_003130185.1|	-	0.1	12.3	0.0	0.17	11.6	0.0	1.4	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
GFO_IDH_MocA	PF01408.17	gi|257052352|ref|YP_003130185.1|	-	0.11	13.0	0.0	0.17	12.4	0.0	1.4	1	0	0	1	1	1	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Lycopene_cycl	PF05834.7	gi|257052352|ref|YP_003130185.1|	-	0.11	11.4	0.0	0.16	10.8	0.0	1.2	1	0	0	1	1	1	0	Lycopene	cyclase	protein
HI0933_like	PF03486.9	gi|257052352|ref|YP_003130185.1|	-	0.15	10.5	0.0	0.22	9.9	0.0	1.2	1	0	0	1	1	1	0	HI0933-like	protein
AsnC_trans_reg	PF01037.16	gi|257052353|ref|YP_003130186.1|	-	2.4e-15	55.9	0.3	2.7e-15	55.8	0.2	1.0	1	0	0	1	1	1	1	AsnC	family
YscJ_FliF	PF01514.12	gi|257052353|ref|YP_003130186.1|	-	0.016	14.3	0.2	0.12	11.5	0.0	2.0	1	1	1	2	2	2	0	Secretory	protein	of	YscJ/FliF	family
GYD	PF08734.6	gi|257052353|ref|YP_003130186.1|	-	0.023	14.4	0.3	0.025	14.3	0.2	1.1	1	0	0	1	1	1	0	GYD	domain
DUF2766	PF10964.3	gi|257052353|ref|YP_003130186.1|	-	0.096	12.5	0.3	0.12	12.2	0.2	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2766)
DCX	PF03607.12	gi|257052353|ref|YP_003130186.1|	-	0.13	11.8	0.0	0.26	10.9	0.0	1.6	1	0	0	1	1	1	0	Doublecortin
DUF4072	PF13284.1	gi|257052354|ref|YP_003130187.1|	-	0.082	13.0	0.2	0.28	11.3	0.1	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4072)
LPAM_1	PF08139.7	gi|257052355|ref|YP_003130188.1|	-	0.83	9.9	4.4	1.5	9.1	3.0	1.4	1	0	0	1	1	1	0	Prokaryotic	membrane	lipoprotein	lipid	attachment	site
DUF457	PF04307.9	gi|257052356|ref|YP_003130189.1|	-	0.005	16.1	2.0	0.007	15.7	1.4	1.4	1	1	0	1	1	1	1	Predicted	membrane-bound	metal-dependent	hydrolase	(DUF457)
Zn_dep_PLPC	PF00882.13	gi|257052356|ref|YP_003130189.1|	-	0.007	16.0	0.0	0.014	15.0	0.0	1.5	1	1	0	2	2	2	1	Zinc	dependent	phospholipase	C
DUF4184	PF13803.1	gi|257052356|ref|YP_003130189.1|	-	0.015	14.5	2.3	1.2	8.4	0.6	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4184)
Glycos_transf_3	PF00591.16	gi|257052357|ref|YP_003130190.1|	-	3.6e-101	337.8	0.7	5e-101	337.3	0.5	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family,	a/b	domain
Glycos_trans_3N	PF02885.12	gi|257052357|ref|YP_003130190.1|	-	6.1e-18	64.1	4.9	8.3e-17	60.5	2.2	2.3	2	0	0	2	2	2	1	Glycosyl	transferase	family,	helical	bundle	domain
DUF2717	PF10911.3	gi|257052357|ref|YP_003130190.1|	-	0.0042	16.5	0.0	0.014	14.8	0.0	1.9	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2717)
PRAI	PF00697.17	gi|257052358|ref|YP_003130191.1|	-	4.3e-39	134.1	0.2	4.8e-39	133.9	0.1	1.0	1	0	0	1	1	1	1	N-(5'phosphoribosyl)anthranilate	(PRA)	isomerase
TMP-TENI	PF02581.12	gi|257052358|ref|YP_003130191.1|	-	0.0047	16.0	1.4	0.018	14.1	0.0	2.3	2	1	0	2	2	2	1	Thiamine	monophosphate	synthase/TENI
BtpA	PF03437.10	gi|257052358|ref|YP_003130191.1|	-	0.025	13.8	0.2	0.38	9.9	0.0	2.1	1	1	1	2	2	2	0	BtpA	family
FMN_dh	PF01070.13	gi|257052358|ref|YP_003130191.1|	-	0.032	13.0	1.6	0.63	8.8	0.0	2.4	1	1	0	2	2	2	0	FMN-dependent	dehydrogenase
PEP_mutase	PF13714.1	gi|257052358|ref|YP_003130191.1|	-	0.032	13.4	2.4	6.8	5.8	0.0	3.1	2	1	1	3	3	3	0	Phosphoenolpyruvate	phosphomutase
NMO	PF03060.10	gi|257052358|ref|YP_003130191.1|	-	0.045	12.9	1.6	0.049	12.7	0.5	1.4	1	1	0	1	1	1	0	Nitronate	monooxygenase
Hydrolase_like	PF13242.1	gi|257052358|ref|YP_003130191.1|	-	0.082	12.6	0.7	0.45	10.2	0.1	2.4	2	0	0	2	2	2	0	HAD-hyrolase-like
Amidohydro_2	PF04909.9	gi|257052358|ref|YP_003130191.1|	-	0.15	11.6	2.2	0.33	10.4	1.5	1.6	1	1	0	1	1	1	0	Amidohydrolase
Amidohydro_4	PF13147.1	gi|257052358|ref|YP_003130191.1|	-	0.21	11.6	9.1	0.27	11.2	6.3	1.2	1	0	0	1	1	1	0	Amidohydrolase
Chorismate_bind	PF00425.13	gi|257052359|ref|YP_003130192.1|	-	1.5e-88	296.4	0.0	3.1e-88	295.4	0.0	1.5	2	0	0	2	2	2	1	chorismate	binding	enzyme
Anth_synt_I_N	PF04715.8	gi|257052359|ref|YP_003130192.1|	-	7.2e-22	77.9	1.0	2.3e-20	73.0	0.1	2.8	2	1	0	2	2	2	1	Anthranilate	synthase	component	I,	N	terminal	region
GATase	PF00117.23	gi|257052360|ref|YP_003130193.1|	-	1.2e-45	155.3	0.0	1.4e-45	155.1	0.0	1.0	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.8	gi|257052360|ref|YP_003130193.1|	-	6.3e-06	25.7	0.0	2.1e-05	24.0	0.0	1.7	1	1	0	1	1	1	1	Peptidase	C26
Thioredoxin	PF00085.15	gi|257052361|ref|YP_003130194.1|	-	4.7e-07	29.4	0.0	1.6e-06	27.6	0.0	1.7	2	0	0	2	2	2	1	Thioredoxin
Redoxin	PF08534.5	gi|257052361|ref|YP_003130194.1|	-	2.7e-05	23.7	0.0	3.6e-05	23.3	0.0	1.3	1	0	0	1	1	1	1	Redoxin
Thioredoxin_8	PF13905.1	gi|257052361|ref|YP_003130194.1|	-	4.1e-05	23.6	0.0	5.9e-05	23.1	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin-like
AhpC-TSA	PF00578.16	gi|257052361|ref|YP_003130194.1|	-	0.00046	19.8	0.0	0.00071	19.2	0.0	1.2	1	0	0	1	1	1	1	AhpC/TSA	family
Thioredoxin_2	PF13098.1	gi|257052361|ref|YP_003130194.1|	-	0.031	14.4	0.0	0.044	13.9	0.0	1.3	1	0	0	1	1	1	0	Thioredoxin-like	domain
PCYCGC	PF13798.1	gi|257052361|ref|YP_003130194.1|	-	0.15	11.7	0.6	2.9	7.5	0.2	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	with	PCYCGC	motif
DsbD	PF02683.10	gi|257052362|ref|YP_003130195.1|	-	1.1e-14	54.6	13.9	1.5e-14	54.1	9.4	1.4	1	1	0	1	1	1	1	Cytochrome	C	biogenesis	protein	transmembrane	region
DsbD_2	PF13386.1	gi|257052362|ref|YP_003130195.1|	-	6.1e-06	26.1	16.4	1.1e-05	25.3	11.4	1.4	1	1	0	1	1	1	1	Cytochrome	C	biogenesis	protein	transmembrane	region
Phage_holin_2	PF04550.7	gi|257052362|ref|YP_003130195.1|	-	2.2	8.4	6.9	2.2	8.4	1.5	2.5	2	0	0	2	2	2	0	Phage	holin	family	2
Metallophos_2	PF12850.2	gi|257052364|ref|YP_003130197.1|	-	5.8e-09	35.9	0.7	2.2e-08	34.1	0.2	2.3	2	0	0	2	2	2	1	Calcineurin-like	phosphoesterase	superfamily	domain
Phasin_2	PF09361.5	gi|257052364|ref|YP_003130197.1|	-	2.5e-06	27.4	5.5	0.0025	17.8	0.0	4.7	4	1	1	5	5	5	1	Phasin	protein
Baculo_PEP_C	PF04513.7	gi|257052364|ref|YP_003130197.1|	-	0.00031	20.6	1.9	9	6.1	0.1	4.6	3	1	0	4	4	4	1	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Rep_fac_C	PF08542.6	gi|257052364|ref|YP_003130197.1|	-	0.0032	17.4	0.5	2.3	8.2	0.0	4.0	3	1	0	3	3	3	1	Replication	factor	C	C-terminal	domain
DUF643	PF04867.7	gi|257052364|ref|YP_003130197.1|	-	0.13	12.6	0.3	33	4.8	0.0	2.8	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF643)
TrmB	PF01978.14	gi|257052364|ref|YP_003130197.1|	-	0.32	10.7	1.0	11	5.7	0.0	3.1	3	0	0	3	3	3	0	Sugar-specific	transcriptional	regulator	TrmB
DUF2884	PF11101.3	gi|257052364|ref|YP_003130197.1|	-	1.4	8.2	5.3	3.1	7.1	0.1	3.0	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2884)
Peptidase_C25	PF01364.13	gi|257052365|ref|YP_003130198.1|	-	0.022	13.7	0.0	0.023	13.7	0.0	1.2	1	0	0	1	1	1	0	Peptidase	family	C25
Ribonuc_red_lgC	PF02867.10	gi|257052366|ref|YP_003130199.1|	-	8.7e-153	509.7	0.0	1.1e-152	509.3	0.0	1.1	1	0	0	1	1	1	1	Ribonucleotide	reductase,	barrel	domain
TSCPD	PF12637.2	gi|257052366|ref|YP_003130199.1|	-	1.9e-26	91.8	0.0	1.4e-25	89.0	0.0	2.5	2	0	0	2	2	2	1	TSCPD	domain
Ribonuc_red_lgN	PF00317.16	gi|257052366|ref|YP_003130199.1|	-	5.6e-26	90.1	0.0	2.2e-25	88.2	0.0	2.1	1	0	0	1	1	1	1	Ribonucleotide	reductase,	all-alpha	domain
zf-ribbon_3	PF13248.1	gi|257052366|ref|YP_003130199.1|	-	0.92	8.7	6.3	1.9	7.8	4.4	1.5	1	0	0	1	1	1	0	zinc-ribbon	domain
Auto_anti-p27	PF06677.7	gi|257052367|ref|YP_003130200.1|	-	4.6e-05	23.0	3.3	5.6e-05	22.8	2.3	1.1	1	0	0	1	1	1	1	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
DZR	PF12773.2	gi|257052367|ref|YP_003130200.1|	-	0.032	14.0	1.7	0.037	13.8	1.2	1.2	1	0	0	1	1	1	0	Double	zinc	ribbon
zinc_ribbon_2	PF13240.1	gi|257052367|ref|YP_003130200.1|	-	0.042	13.3	0.3	0.042	13.3	0.2	2.0	2	1	0	1	1	1	0	zinc-ribbon	domain
Rieske	PF00355.21	gi|257052367|ref|YP_003130200.1|	-	0.1	12.1	1.8	0.12	11.9	1.3	1.1	1	0	0	1	1	1	0	Rieske	[2Fe-2S]	domain
zf-C4_Topoisom	PF01396.14	gi|257052367|ref|YP_003130200.1|	-	0.2	11.1	3.0	0.45	10.0	2.0	1.7	1	1	1	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
Fer4_9	PF13187.1	gi|257052367|ref|YP_003130200.1|	-	0.49	10.6	3.6	0.59	10.4	2.5	1.2	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
zf-Mss51	PF13824.1	gi|257052367|ref|YP_003130200.1|	-	0.58	10.0	6.8	6.2	6.7	4.7	2.0	1	1	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
zf-FPG_IleRS	PF06827.9	gi|257052367|ref|YP_003130200.1|	-	1.2	8.8	7.4	3.4	7.4	5.2	1.9	1	1	0	1	1	1	0	Zinc	finger	found	in	FPG	and	IleRS
DUF1610	PF07754.6	gi|257052367|ref|YP_003130200.1|	-	1.4	9.0	12.4	16	5.7	1.0	2.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF1610)
zf-ribbon_3	PF13248.1	gi|257052367|ref|YP_003130200.1|	-	1.7	7.9	5.2	0.59	9.4	1.2	2.1	1	1	0	1	1	1	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|257052367|ref|YP_003130200.1|	-	1.9	7.8	4.9	6.4	6.1	3.4	1.9	1	1	0	1	1	1	0	TFIIB	zinc-binding
SNARE_assoc	PF09335.6	gi|257052368|ref|YP_003130201.1|	-	9.3e-17	61.3	4.7	9.3e-17	61.3	3.2	2.1	3	0	0	3	3	3	1	SNARE	associated	Golgi	protein
Kinocilin	PF15033.1	gi|257052368|ref|YP_003130201.1|	-	0.026	14.0	0.8	0.026	14.0	0.6	1.8	2	0	0	2	2	2	0	Kinocilin	protein
DUF3382	PF11862.3	gi|257052368|ref|YP_003130201.1|	-	9.5	6.1	9.4	0.35	10.8	0.7	2.4	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF3382)
TSC22	PF01166.13	gi|257052370|ref|YP_003130203.1|	-	0.011	15.6	0.9	0.025	14.5	0.6	1.6	1	0	0	1	1	1	0	TSC-22/dip/bun	family
bPH_3	PF14470.1	gi|257052370|ref|YP_003130203.1|	-	0.011	15.9	0.0	0.29	11.4	0.0	2.2	2	0	0	2	2	2	0	Bacterial	PH	domain
DUF3294	PF07957.6	gi|257052370|ref|YP_003130203.1|	-	0.046	13.2	0.4	0.11	12.0	0.3	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3294)
IER	PF05760.7	gi|257052370|ref|YP_003130203.1|	-	4	7.2	13.5	5.8	6.7	9.3	1.2	1	0	0	1	1	1	0	Immediate	early	response	protein	(IER)
Tad	PF13400.1	gi|257052373|ref|YP_003130206.1|	-	0.42	10.6	3.8	0.5	10.4	2.6	1.2	1	0	0	1	1	1	0	Putative	Flp	pilus-assembly	TadE/G-like
Thymidylate_kin	PF02223.12	gi|257052374|ref|YP_003130207.1|	-	1.9e-37	128.4	0.0	2.2e-37	128.2	0.0	1.0	1	0	0	1	1	1	1	Thymidylate	kinase
AAA_18	PF13238.1	gi|257052374|ref|YP_003130207.1|	-	0.00078	19.7	0.0	0.0014	18.9	0.0	1.4	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.1	gi|257052374|ref|YP_003130207.1|	-	0.0055	16.5	0.1	0.016	15.0	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_28	PF13521.1	gi|257052374|ref|YP_003130207.1|	-	0.012	15.5	1.2	0.017	15.0	0.8	1.4	1	1	0	1	1	1	0	AAA	domain
DUF3144	PF11342.3	gi|257052374|ref|YP_003130207.1|	-	0.038	14.0	0.0	0.078	13.0	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3144)
NAD_binding_10	PF13460.1	gi|257052375|ref|YP_003130208.1|	-	3.2e-33	115.2	0.0	4e-33	114.9	0.0	1.1	1	0	0	1	1	1	1	NADH(P)-binding
Epimerase	PF01370.16	gi|257052375|ref|YP_003130208.1|	-	8e-22	77.8	0.0	3.3e-21	75.7	0.0	1.9	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.14	gi|257052375|ref|YP_003130208.1|	-	5.1e-16	58.2	0.0	8.3e-15	54.2	0.0	2.0	1	1	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NmrA	PF05368.8	gi|257052375|ref|YP_003130208.1|	-	2.7e-15	56.2	0.0	3.7e-15	55.8	0.0	1.1	1	0	0	1	1	1	1	NmrA-like	family
RmlD_sub_bind	PF04321.12	gi|257052375|ref|YP_003130208.1|	-	1.4e-14	53.6	0.0	7.2e-13	48.0	0.0	2.2	1	1	0	1	1	1	1	RmlD	substrate	binding	domain
NAD_binding_4	PF07993.7	gi|257052375|ref|YP_003130208.1|	-	6.7e-07	28.4	0.0	0.0025	16.8	0.0	2.3	1	1	0	2	2	2	2	Male	sterility	protein
adh_short	PF00106.20	gi|257052375|ref|YP_003130208.1|	-	4.4e-05	23.4	0.2	0.00014	21.7	0.1	2.0	1	1	0	1	1	1	1	short	chain	dehydrogenase
Polysacc_synt_2	PF02719.10	gi|257052375|ref|YP_003130208.1|	-	5.4e-05	22.2	0.0	0.0016	17.4	0.0	2.1	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
Saccharop_dh	PF03435.13	gi|257052375|ref|YP_003130208.1|	-	0.0014	17.6	0.1	0.002	17.1	0.1	1.2	1	0	0	1	1	1	1	Saccharopine	dehydrogenase
TrkA_N	PF02254.13	gi|257052375|ref|YP_003130208.1|	-	0.0015	18.5	0.0	0.0037	17.2	0.0	1.6	2	0	0	2	2	2	1	TrkA-N	domain
Glyco_trans_4_4	PF13579.1	gi|257052375|ref|YP_003130208.1|	-	0.0044	17.1	0.1	0.0097	16.0	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
KR	PF08659.5	gi|257052375|ref|YP_003130208.1|	-	0.015	15.0	0.0	0.47	10.0	0.1	2.6	2	1	0	2	2	2	0	KR	domain
Glyco_transf_4	PF13439.1	gi|257052375|ref|YP_003130208.1|	-	0.06	13.0	0.0	0.11	12.2	0.0	1.4	1	0	0	1	1	1	0	Glycosyltransferase	Family	4
Tubulin	PF00091.20	gi|257052376|ref|YP_003130209.1|	-	2.3e-25	89.6	0.0	5.1e-25	88.5	0.0	1.5	1	1	0	1	1	1	1	Tubulin/FtsZ	family,	GTPase	domain
ketoacyl-synt	PF00109.21	gi|257052377|ref|YP_003130210.1|	-	0.00034	20.1	0.1	0.00058	19.4	0.0	1.4	1	0	0	1	1	1	1	Beta-ketoacyl	synthase,	N-terminal	domain
DUF4366	PF14283.1	gi|257052377|ref|YP_003130210.1|	-	0.019	14.4	0.1	0.1	12.0	0.0	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4366)
DUF4398	PF14346.1	gi|257052377|ref|YP_003130210.1|	-	0.025	14.6	6.0	0.06	13.3	4.2	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4398)
DUF4131	PF13567.1	gi|257052377|ref|YP_003130210.1|	-	0.052	12.9	0.0	1.7	7.9	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4131)
CofC	PF01983.11	gi|257052378|ref|YP_003130211.1|	-	5.9e-39	133.2	0.0	6.5e-39	133.1	0.0	1.0	1	0	0	1	1	1	1	Guanylyl	transferase	CofC	like
NTP_transf_3	PF12804.2	gi|257052378|ref|YP_003130211.1|	-	0.00089	19.3	0.6	0.0011	19.1	0.4	1.3	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Radical_SAM	PF04055.16	gi|257052380|ref|YP_003130213.1|	-	7.9e-17	61.9	0.0	1.6e-16	60.9	0.0	1.5	1	0	0	1	1	1	1	Radical	SAM	superfamily
SBP_bac_5	PF00496.17	gi|257052381|ref|YP_003130214.1|	-	7.4e-36	123.7	5.9	1.2e-35	123.0	4.1	1.3	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
Trypan_PARP	PF05887.6	gi|257052381|ref|YP_003130214.1|	-	8.5	6.1	16.6	25	4.6	11.5	1.7	1	0	0	1	1	1	0	Procyclic	acidic	repetitive	protein	(PARP)
zf-ribbon_3	PF13248.1	gi|257052382|ref|YP_003130215.1|	-	4.9e-05	22.3	1.8	7.4e-05	21.8	1.2	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.2	gi|257052382|ref|YP_003130215.1|	-	0.00046	19.9	2.5	0.00069	19.3	1.7	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.1	gi|257052382|ref|YP_003130215.1|	-	0.0025	17.2	2.9	0.0038	16.6	2.0	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
Rubredoxin	PF00301.15	gi|257052382|ref|YP_003130215.1|	-	0.056	13.3	0.1	0.056	13.3	0.1	1.7	2	1	0	2	2	2	0	Rubredoxin
TF_Zn_Ribbon	PF08271.7	gi|257052382|ref|YP_003130215.1|	-	3.3	7.1	5.8	7.3	5.9	4.0	1.5	1	1	0	1	1	1	0	TFIIB	zinc-binding
HTH_10	PF04967.7	gi|257052383|ref|YP_003130216.1|	-	1.4e-14	53.3	0.0	2.2e-14	52.7	0.0	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_24	PF13412.1	gi|257052383|ref|YP_003130216.1|	-	0.00012	21.4	0.0	0.00017	20.8	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.15	gi|257052383|ref|YP_003130216.1|	-	0.0043	16.6	0.0	0.0096	15.5	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.2	gi|257052383|ref|YP_003130216.1|	-	0.023	14.3	0.0	0.052	13.2	0.0	1.6	1	0	0	1	1	1	0	MarR	family
Radical_SAM	PF04055.16	gi|257052384|ref|YP_003130217.1|	-	4.5e-14	52.9	0.1	1.7e-13	51.0	0.0	2.0	2	0	0	2	2	2	1	Radical	SAM	superfamily
MatE	PF01554.13	gi|257052385|ref|YP_003130218.1|	-	1.2e-60	203.8	33.0	4e-35	120.8	7.1	2.7	3	0	0	3	3	3	2	MatE
Polysacc_synt_C	PF14667.1	gi|257052385|ref|YP_003130218.1|	-	1.3e-06	28.2	21.7	1.8e-05	24.5	6.5	5.6	4	3	1	5	5	5	2	Polysaccharide	biosynthesis	C-terminal	domain
VirB8	PF04335.8	gi|257052385|ref|YP_003130218.1|	-	2.2	7.8	4.0	0.78	9.2	0.4	1.9	2	0	0	2	2	2	0	VirB8	protein
DUF2345	PF10106.4	gi|257052387|ref|YP_003130220.1|	-	0.001	18.7	10.9	0.0081	15.7	0.8	3.4	2	2	0	2	2	2	2	Uncharacterized	protein	conserved	in	bacteria	(DUF2345)
Sarcoglycan_1	PF04790.8	gi|257052387|ref|YP_003130220.1|	-	0.0015	17.7	3.9	0.32	10.1	0.1	3.1	1	1	2	3	3	3	2	Sarcoglycan	complex	subunit	protein
Fil_haemagg_2	PF13332.1	gi|257052387|ref|YP_003130220.1|	-	0.39	10.4	37.2	0.15	11.7	8.2	4.1	2	1	0	3	3	3	0	Haemagluttinin	repeat
Peptidase_S24	PF00717.18	gi|257052388|ref|YP_003130221.1|	-	0.0024	17.5	0.5	0.0041	16.7	0.3	1.6	1	1	0	1	1	1	1	Peptidase	S24-like
DUF504	PF04457.7	gi|257052388|ref|YP_003130221.1|	-	0.12	12.5	0.1	0.27	11.4	0.1	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF504)
Peptidase_M73	PF12389.3	gi|257052389|ref|YP_003130222.1|	-	5.6e-10	39.0	7.8	2.1e-09	37.1	5.4	1.7	1	1	0	1	1	1	1	Camelysin	metallo-endopeptidase
TAT_signal	PF10518.4	gi|257052389|ref|YP_003130222.1|	-	0.29	11.2	8.1	0.63	10.1	5.6	1.6	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Autotrns_rpt	PF12951.2	gi|257052389|ref|YP_003130222.1|	-	0.31	10.7	5.7	0.3	10.8	2.0	2.4	2	0	0	2	2	2	0	Autotransporter-associated	beta	strand	repeat
FlaE	PF07559.9	gi|257052389|ref|YP_003130222.1|	-	0.51	11.0	12.8	0.11	13.1	4.7	2.1	1	1	1	2	2	2	0	Flagellar	basal	body	protein	FlaE
Peptidase_M73	PF12389.3	gi|257052390|ref|YP_003130223.1|	-	6.2e-11	42.1	7.8	1.1e-10	41.3	5.4	1.4	1	1	0	1	1	1	1	Camelysin	metallo-endopeptidase
TAT_signal	PF10518.4	gi|257052390|ref|YP_003130223.1|	-	0.072	13.1	5.9	0.13	12.3	4.1	1.4	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
PsbQ	PF05757.6	gi|257052390|ref|YP_003130223.1|	-	0.094	12.1	0.1	0.12	11.7	0.1	1.2	1	0	0	1	1	1	0	Oxygen	evolving	enhancer	protein	3	(PsbQ)
TrkA_N	PF02254.13	gi|257052391|ref|YP_003130224.1|	-	1.5e-15	57.2	0.7	3.3e-15	56.1	0.5	1.6	1	0	0	1	1	1	1	TrkA-N	domain
TrkA_C	PF02080.16	gi|257052391|ref|YP_003130224.1|	-	5.8e-13	48.2	3.9	2.1e-10	40.0	0.1	3.3	4	0	0	4	4	4	2	TrkA-C	domain
Abhydrolase_4	PF08386.5	gi|257052391|ref|YP_003130224.1|	-	0.0015	18.4	0.1	0.01	15.6	0.0	2.2	2	0	0	2	2	2	1	TAP-like	protein
Na_Ca_ex	PF01699.19	gi|257052393|ref|YP_003130226.1|	-	6.5e-38	129.4	26.2	2e-20	72.8	7.6	2.1	2	0	0	2	2	2	2	Sodium/calcium	exchanger	protein
TrkA_N	PF02254.13	gi|257052394|ref|YP_003130227.1|	-	1.6e-33	115.1	2.7	2.9e-33	114.2	1.8	1.4	1	0	0	1	1	1	1	TrkA-N	domain
Na_H_Exchanger	PF00999.16	gi|257052394|ref|YP_003130227.1|	-	2.8e-28	98.5	49.1	3.7e-28	98.1	34.0	1.1	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
TrkA_C	PF02080.16	gi|257052394|ref|YP_003130227.1|	-	8.8e-13	47.6	0.5	3.4e-12	45.7	0.0	2.2	2	0	0	2	2	2	1	TrkA-C	domain
NAD_binding_7	PF13241.1	gi|257052394|ref|YP_003130227.1|	-	7.7e-07	29.3	0.2	2e-06	27.9	0.2	1.7	1	0	0	1	1	1	1	Putative	NAD(P)-binding
NAD_binding_10	PF13460.1	gi|257052394|ref|YP_003130227.1|	-	0.00012	22.1	1.0	0.00024	21.1	0.7	1.5	1	0	0	1	1	1	1	NADH(P)-binding
NAD_Gly3P_dh_N	PF01210.18	gi|257052394|ref|YP_003130227.1|	-	0.00015	21.4	0.4	0.0012	18.6	0.0	2.6	2	1	1	3	3	3	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
FAD_binding_3	PF01494.14	gi|257052394|ref|YP_003130227.1|	-	0.00033	19.8	0.0	0.00044	19.4	0.0	1.3	1	0	0	1	1	1	1	FAD	binding	domain
UDPG_MGDP_dh_N	PF03721.9	gi|257052394|ref|YP_003130227.1|	-	0.00077	18.8	0.1	0.0013	18.1	0.1	1.3	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
ApbA	PF02558.11	gi|257052394|ref|YP_003130227.1|	-	0.0013	18.2	0.1	0.0032	16.9	0.0	1.7	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
F420_oxidored	PF03807.12	gi|257052394|ref|YP_003130227.1|	-	0.0017	18.7	5.7	0.004	17.5	0.1	3.4	3	1	1	4	4	4	1	NADP	oxidoreductase	coenzyme	F420-dependent
Saccharop_dh	PF03435.13	gi|257052394|ref|YP_003130227.1|	-	0.0048	15.9	0.4	0.0072	15.3	0.2	1.3	1	0	0	1	1	1	1	Saccharopine	dehydrogenase
XdhC_C	PF13478.1	gi|257052394|ref|YP_003130227.1|	-	0.0088	16.3	0.1	0.017	15.4	0.0	1.5	1	0	0	1	1	1	1	XdhC	Rossmann	domain
2-Hacid_dh_C	PF02826.14	gi|257052394|ref|YP_003130227.1|	-	0.026	13.6	0.1	0.049	12.7	0.1	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.7	gi|257052394|ref|YP_003130227.1|	-	0.034	13.5	0.0	0.072	12.4	0.0	1.5	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
Pyr_redox	PF00070.22	gi|257052394|ref|YP_003130227.1|	-	0.035	14.5	0.5	0.16	12.4	0.2	2.2	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Epimerase	PF01370.16	gi|257052394|ref|YP_003130227.1|	-	0.086	12.2	0.3	0.17	11.2	0.2	1.5	2	0	0	2	2	2	0	NAD	dependent	epimerase/dehydratase	family
Pyr_redox_2	PF07992.9	gi|257052394|ref|YP_003130227.1|	-	0.1	12.4	1.4	0.19	11.5	0.1	2.0	2	1	1	3	3	3	0	Pyridine	nucleotide-disulphide	oxidoreductase
Lactamase_B	PF00753.22	gi|257052395|ref|YP_003130228.1|	-	3.4e-25	88.8	8.6	5.3e-25	88.2	5.9	1.2	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.2	gi|257052395|ref|YP_003130228.1|	-	1.6e-05	24.5	0.5	2.3e-05	24.0	0.4	1.4	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Ribosomal_L40e	PF01020.12	gi|257052396|ref|YP_003130229.1|	-	7.7e-06	25.4	5.2	8.5e-06	25.2	3.6	1.1	1	0	0	1	1	1	1	Ribosomal	L40e	family
zf-DHHC	PF01529.15	gi|257052396|ref|YP_003130229.1|	-	0.00033	20.1	0.8	0.00035	20.0	0.5	1.0	1	0	0	1	1	1	1	DHHC	palmitoyltransferase
DZR	PF12773.2	gi|257052396|ref|YP_003130229.1|	-	0.00069	19.3	1.3	0.00075	19.2	0.9	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.1	gi|257052396|ref|YP_003130229.1|	-	0.0074	15.7	1.4	0.01	15.2	0.9	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
zf-ribbon_3	PF13248.1	gi|257052396|ref|YP_003130229.1|	-	0.037	13.2	1.4	0.048	12.8	1.0	1.2	1	0	0	1	1	1	0	zinc-ribbon	domain
DnaJ_CXXCXGXG	PF00684.14	gi|257052396|ref|YP_003130229.1|	-	0.074	13.1	1.8	0.081	12.9	1.2	1.2	1	0	0	1	1	1	0	DnaJ	central	domain
DNA_RNApol_7kD	PF03604.8	gi|257052396|ref|YP_003130229.1|	-	0.21	11.0	6.4	0.49	9.9	4.4	1.6	1	1	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
Ribosomal_L37e	PF01907.14	gi|257052396|ref|YP_003130229.1|	-	0.92	9.3	4.3	1.4	8.7	3.0	1.4	1	1	0	1	1	1	0	Ribosomal	protein	L37e
LysR_substrate	PF03466.15	gi|257052397|ref|YP_003130230.1|	-	0.0018	17.3	0.0	0.0035	16.4	0.0	1.4	1	0	0	1	1	1	1	LysR	substrate	binding	domain
MR_MLE_C	PF13378.1	gi|257052397|ref|YP_003130230.1|	-	0.01	15.8	0.0	0.023	14.6	0.0	1.6	1	0	0	1	1	1	0	Enolase	C-terminal	domain-like
MAAL_C	PF07476.6	gi|257052397|ref|YP_003130230.1|	-	0.067	12.1	0.0	0.11	11.4	0.0	1.2	1	0	0	1	1	1	0	Methylaspartate	ammonia-lyase	C-terminus
DUF367	PF04034.8	gi|257052398|ref|YP_003130231.1|	-	1.2e-43	147.7	0.0	1.5e-43	147.4	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF367)
RLI	PF04068.10	gi|257052398|ref|YP_003130231.1|	-	7.9e-08	31.7	0.0	1.3e-07	31.0	0.0	1.3	1	0	0	1	1	1	1	Possible	Fer4-like	domain	in	RNase	L	inhibitor,	RLI
AhpC-TSA	PF00578.16	gi|257052399|ref|YP_003130232.1|	-	3.1e-26	91.4	0.0	5.5e-26	90.6	0.0	1.4	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.5	gi|257052399|ref|YP_003130232.1|	-	2.3e-17	62.8	0.0	4e-17	62.1	0.0	1.4	1	0	0	1	1	1	1	Redoxin
DUF1771	PF08590.5	gi|257052399|ref|YP_003130232.1|	-	0.00079	19.3	2.1	0.0026	17.7	1.4	1.9	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1771)
SnoaL_2	PF12680.2	gi|257052400|ref|YP_003130233.1|	-	3e-11	43.6	1.0	3.5e-11	43.3	0.7	1.1	1	0	0	1	1	1	1	SnoaL-like	domain
SnoaL_4	PF13577.1	gi|257052400|ref|YP_003130233.1|	-	1.4e-06	28.1	0.2	2.2e-06	27.6	0.1	1.3	1	1	0	1	1	1	1	SnoaL-like	domain
DUF4440	PF14534.1	gi|257052400|ref|YP_003130233.1|	-	1.6e-05	25.0	0.1	2e-05	24.7	0.1	1.3	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4440)
NTF2	PF02136.15	gi|257052400|ref|YP_003130233.1|	-	0.00037	20.8	0.0	0.00046	20.5	0.0	1.2	1	0	0	1	1	1	1	Nuclear	transport	factor	2	(NTF2)	domain
SnoaL	PF07366.7	gi|257052400|ref|YP_003130233.1|	-	0.00054	19.5	0.0	0.00072	19.1	0.0	1.3	1	0	0	1	1	1	1	SnoaL-like	polyketide	cyclase
SnoaL_3	PF13474.1	gi|257052400|ref|YP_003130233.1|	-	0.0022	18.0	0.0	0.003	17.6	0.0	1.3	1	0	0	1	1	1	1	SnoaL-like	domain
LEH	PF07858.7	gi|257052400|ref|YP_003130233.1|	-	0.032	14.2	0.0	0.035	14.1	0.0	1.1	1	0	0	1	1	1	0	Limonene-1,2-epoxide	hydrolase	catalytic	domain
DUF4131	PF13567.1	gi|257052401|ref|YP_003130234.1|	-	6.3	6.1	9.0	2.1	7.7	4.5	1.5	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4131)
FrhB_FdhB_C	PF04432.8	gi|257052402|ref|YP_003130235.1|	-	8.5e-29	100.0	0.0	8.5e-29	100.0	0.0	1.9	2	1	0	2	2	2	1	Coenzyme	F420	hydrogenase/dehydrogenase,	beta	subunit	C	terminus
FrhB_FdhB_N	PF04422.8	gi|257052402|ref|YP_003130235.1|	-	3.5e-21	74.8	0.0	7.2e-21	73.8	0.0	1.5	1	0	0	1	1	1	1	Coenzyme	F420	hydrogenase/dehydrogenase,	beta	subunit	N-term
Fer4_21	PF14697.1	gi|257052402|ref|YP_003130235.1|	-	1.7e-09	37.4	6.1	1.7e-09	37.4	4.3	2.0	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|257052402|ref|YP_003130235.1|	-	7.5e-08	32.5	8.5	7.5e-08	32.5	5.9	2.9	3	0	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|257052402|ref|YP_003130235.1|	-	3e-07	30.1	13.5	4.8e-07	29.4	7.1	2.8	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|257052402|ref|YP_003130235.1|	-	4.2e-07	29.3	21.3	8.4e-06	25.1	2.4	3.6	4	0	0	4	4	3	2	4Fe-4S	binding	domain
Fer4_16	PF13484.1	gi|257052402|ref|YP_003130235.1|	-	1.5e-06	28.8	9.2	0.01	16.5	0.9	3.9	4	0	0	4	4	3	2	4Fe-4S	double	cluster	binding	domain
Fer4_17	PF13534.1	gi|257052402|ref|YP_003130235.1|	-	2.6e-06	27.6	3.3	0.0081	16.4	0.0	3.0	3	0	0	3	3	2	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|257052402|ref|YP_003130235.1|	-	3.6e-06	27.2	9.9	3.6e-06	27.2	6.8	2.7	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|257052402|ref|YP_003130235.1|	-	0.00011	21.9	4.2	0.00011	21.9	2.9	3.7	4	0	0	4	4	3	2	4Fe-4S	binding	domain
Fer4_6	PF12837.2	gi|257052402|ref|YP_003130235.1|	-	0.00035	20.3	3.7	0.00035	20.3	2.6	3.2	3	0	0	3	3	3	1	4Fe-4S	binding	domain
Fer4_8	PF13183.1	gi|257052402|ref|YP_003130235.1|	-	0.0022	18.0	13.2	0.013	15.5	7.9	2.8	2	1	2	4	4	4	3	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|257052402|ref|YP_003130235.1|	-	0.0037	17.4	13.0	0.011	16.0	3.2	3.8	4	0	0	4	4	3	2	4Fe-4S	binding	domain
Fer4_15	PF13459.1	gi|257052402|ref|YP_003130235.1|	-	0.029	14.9	1.4	0.029	14.9	0.9	4.1	3	1	1	4	4	4	0	4Fe-4S	single	cluster	domain
Fer4_18	PF13746.1	gi|257052402|ref|YP_003130235.1|	-	0.049	14.0	18.5	0.22	11.9	2.2	3.1	2	1	1	3	3	2	0	4Fe-4S	dicluster	domain
Fer4_13	PF13370.1	gi|257052402|ref|YP_003130235.1|	-	0.2	12.0	15.9	0.38	11.1	2.0	3.6	3	0	0	3	3	3	0	4Fe-4S	single	cluster	domain
NIR_SIR	PF01077.17	gi|257052403|ref|YP_003130236.1|	-	8.3e-47	158.4	0.0	7.6e-34	116.3	0.0	2.4	2	0	0	2	2	2	2	Nitrite	and	sulphite	reductase	4Fe-4S	domain
NIR_SIR_ferr	PF03460.12	gi|257052403|ref|YP_003130236.1|	-	1e-28	98.7	0.1	2.7e-13	49.3	0.0	3.3	2	1	0	2	2	2	2	Nitrite/Sulfite	reductase	ferredoxin-like	half	domain
SRP54	PF00448.17	gi|257052404|ref|YP_003130237.1|	-	4.9e-67	225.1	0.2	6.7e-67	224.7	0.1	1.2	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
SRP54_N	PF02881.14	gi|257052404|ref|YP_003130237.1|	-	1.6e-10	40.9	0.4	3.6e-10	39.8	0.3	1.5	1	0	0	1	1	1	1	SRP54-type	protein,	helical	bundle	domain
APS_kinase	PF01583.15	gi|257052404|ref|YP_003130237.1|	-	5.7e-07	29.3	0.1	1.6e-06	27.8	0.0	1.7	2	0	0	2	2	2	1	Adenylylsulphate	kinase
AAA_16	PF13191.1	gi|257052404|ref|YP_003130237.1|	-	4.1e-06	26.9	2.9	0.00029	20.8	0.0	2.5	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_19	PF13245.1	gi|257052404|ref|YP_003130237.1|	-	4.1e-05	23.2	0.1	0.00012	21.7	0.1	1.9	1	0	0	1	1	1	1	Part	of	AAA	domain
CbiA	PF01656.18	gi|257052404|ref|YP_003130237.1|	-	0.0001	21.8	0.9	0.00066	19.1	0.6	2.2	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
Zeta_toxin	PF06414.7	gi|257052404|ref|YP_003130237.1|	-	0.00013	21.1	0.4	0.00022	20.4	0.0	1.6	2	0	0	2	2	1	1	Zeta	toxin
MobB	PF03205.9	gi|257052404|ref|YP_003130237.1|	-	0.00025	20.7	0.2	0.00072	19.2	0.1	1.9	1	1	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_30	PF13604.1	gi|257052404|ref|YP_003130237.1|	-	0.00056	19.5	0.6	0.0012	18.4	0.4	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_28	PF13521.1	gi|257052404|ref|YP_003130237.1|	-	0.00072	19.5	1.1	0.0044	16.9	0.0	2.7	3	0	0	3	3	3	1	AAA	domain
AAA_17	PF13207.1	gi|257052404|ref|YP_003130237.1|	-	0.0012	19.6	0.6	0.0036	18.1	0.1	2.2	2	1	0	2	2	1	1	AAA	domain
AAA_22	PF13401.1	gi|257052404|ref|YP_003130237.1|	-	0.0012	18.9	0.0	0.0031	17.6	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
Thymidylate_kin	PF02223.12	gi|257052404|ref|YP_003130237.1|	-	0.0012	18.2	0.1	0.009	15.4	0.0	2.1	2	0	0	2	2	2	1	Thymidylate	kinase
ArgK	PF03308.11	gi|257052404|ref|YP_003130237.1|	-	0.0018	17.1	0.1	0.0035	16.1	0.0	1.5	2	0	0	2	2	2	1	ArgK	protein
AAA_33	PF13671.1	gi|257052404|ref|YP_003130237.1|	-	0.0019	18.0	0.0	0.009	15.8	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
KTI12	PF08433.5	gi|257052404|ref|YP_003130237.1|	-	0.0044	16.2	0.0	0.0074	15.5	0.0	1.2	1	0	0	1	1	1	1	Chromatin	associated	protein	KTI12
NTPase_1	PF03266.10	gi|257052404|ref|YP_003130237.1|	-	0.011	15.4	0.1	0.02	14.5	0.1	1.4	1	0	0	1	1	1	0	NTPase
DUF2075	PF09848.4	gi|257052404|ref|YP_003130237.1|	-	0.011	14.7	0.0	0.017	14.0	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
PPK2	PF03976.9	gi|257052404|ref|YP_003130237.1|	-	0.014	14.6	0.0	0.023	13.9	0.0	1.2	1	0	0	1	1	1	0	Polyphosphate	kinase	2	(PPK2)
cobW	PF02492.14	gi|257052404|ref|YP_003130237.1|	-	0.016	14.7	1.2	0.024	14.0	0.1	1.8	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_14	PF13173.1	gi|257052404|ref|YP_003130237.1|	-	0.021	14.7	0.0	0.05	13.5	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
6PF2K	PF01591.13	gi|257052404|ref|YP_003130237.1|	-	0.021	13.9	0.0	0.035	13.1	0.0	1.3	1	0	0	1	1	1	0	6-phosphofructo-2-kinase
ArsA_ATPase	PF02374.10	gi|257052404|ref|YP_003130237.1|	-	0.024	13.6	0.1	0.052	12.5	0.0	1.5	1	0	0	1	1	1	0	Anion-transporting	ATPase
AAA_18	PF13238.1	gi|257052404|ref|YP_003130237.1|	-	0.031	14.5	0.1	0.085	13.1	0.0	1.7	2	0	0	2	2	1	0	AAA	domain
ATP_bind_1	PF03029.12	gi|257052404|ref|YP_003130237.1|	-	0.039	13.4	0.1	0.073	12.6	0.0	1.4	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
AAA_31	PF13614.1	gi|257052404|ref|YP_003130237.1|	-	0.046	13.6	0.0	0.087	12.7	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
AAA	PF00004.24	gi|257052404|ref|YP_003130237.1|	-	0.059	13.5	0.1	0.13	12.4	0.0	1.8	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_29	PF13555.1	gi|257052404|ref|YP_003130237.1|	-	0.067	12.7	0.0	0.16	11.4	0.0	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
DUF258	PF03193.11	gi|257052404|ref|YP_003130237.1|	-	0.083	12.0	0.0	0.14	11.3	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
NACHT	PF05729.7	gi|257052404|ref|YP_003130237.1|	-	0.13	11.8	0.0	0.25	10.9	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
TrwB_AAD_bind	PF10412.4	gi|257052404|ref|YP_003130237.1|	-	0.14	10.8	0.0	0.22	10.1	0.0	1.2	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_23	PF13476.1	gi|257052404|ref|YP_003130237.1|	-	0.17	12.2	0.0	0.31	11.3	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
Prefoldin	PF02996.12	gi|257052405|ref|YP_003130238.1|	-	6.1e-26	90.4	10.5	6.1e-26	90.4	7.3	2.2	1	1	1	2	2	2	1	Prefoldin	subunit
DUF972	PF06156.8	gi|257052405|ref|YP_003130238.1|	-	0.00033	20.9	15.8	0.037	14.3	0.1	2.1	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF972)
Prefoldin_3	PF13758.1	gi|257052405|ref|YP_003130238.1|	-	0.00074	19.2	4.3	0.00074	19.2	3.0	2.3	1	1	1	2	2	2	1	Prefoldin	subunit
IncA	PF04156.9	gi|257052405|ref|YP_003130238.1|	-	0.001	18.7	28.8	0.075	12.6	11.2	2.1	2	0	0	2	2	2	2	IncA	protein
DUF4515	PF14988.1	gi|257052405|ref|YP_003130238.1|	-	0.0015	18.1	24.8	0.002	17.8	9.2	2.2	2	1	0	2	2	2	1	Domain	of	unknown	function	(DUF4515)
APG6	PF04111.7	gi|257052405|ref|YP_003130238.1|	-	0.0016	17.5	25.7	0.03	13.3	8.8	2.0	2	0	0	2	2	2	2	Autophagy	protein	Apg6
Prefoldin_2	PF01920.15	gi|257052405|ref|YP_003130238.1|	-	0.0019	17.9	12.9	0.0019	17.9	8.9	3.6	1	1	2	3	3	2	2	Prefoldin	subunit
MIS13	PF08202.6	gi|257052405|ref|YP_003130238.1|	-	0.0031	16.6	10.9	0.0045	16.1	7.6	1.1	1	0	0	1	1	1	1	Mis12-Mtw1	protein	family
Lzipper-MIP1	PF14389.1	gi|257052405|ref|YP_003130238.1|	-	0.0038	17.3	6.5	0.0038	17.3	4.5	2.6	2	1	0	2	2	2	1	Leucine-zipper	of	ternary	complex	factor	MIP1
Ax_dynein_light	PF10211.4	gi|257052405|ref|YP_003130238.1|	-	0.0038	17.1	24.2	0.11	12.3	2.2	2.1	2	0	0	2	2	2	2	Axonemal	dynein	light	chain
CENP-F_leu_zip	PF10473.4	gi|257052405|ref|YP_003130238.1|	-	0.0039	17.0	23.8	0.13	12.0	9.5	2.1	2	0	0	2	2	2	2	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Laminin_I	PF06008.9	gi|257052405|ref|YP_003130238.1|	-	0.0081	15.5	8.4	0.0081	15.5	5.9	2.1	2	0	0	2	2	2	1	Laminin	Domain	I
Fib_alpha	PF08702.5	gi|257052405|ref|YP_003130238.1|	-	0.0096	16.0	15.3	0.21	11.6	6.0	2.2	2	0	0	2	2	2	1	Fibrinogen	alpha/beta	chain	family
BLOC1_2	PF10046.4	gi|257052405|ref|YP_003130238.1|	-	0.01	15.9	25.1	0.017	15.2	3.9	2.9	2	1	1	3	3	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
FliD_C	PF07195.7	gi|257052405|ref|YP_003130238.1|	-	0.01	15.1	14.4	0.019	14.2	5.2	2.1	2	0	0	2	2	2	0	Flagellar	hook-associated	protein	2	C-terminus
TSC22	PF01166.13	gi|257052405|ref|YP_003130238.1|	-	0.011	15.7	8.9	0.011	15.7	6.1	2.4	2	0	0	2	2	2	0	TSC-22/dip/bun	family
DivIC	PF04977.10	gi|257052405|ref|YP_003130238.1|	-	0.017	14.5	8.2	0.017	14.5	5.7	3.1	2	1	1	3	3	2	0	Septum	formation	initiator
MCH	PF02289.11	gi|257052405|ref|YP_003130238.1|	-	0.018	14.0	0.2	0.018	14.0	0.1	1.4	2	0	0	2	2	1	0	Cyclohydrolase	(MCH)
Tropomyosin_1	PF12718.2	gi|257052405|ref|YP_003130238.1|	-	0.019	14.8	26.7	0.25	11.1	3.0	2.1	2	0	0	2	2	2	0	Tropomyosin	like
NPV_P10	PF05531.7	gi|257052405|ref|YP_003130238.1|	-	0.019	15.1	21.8	0.095	12.9	1.9	2.5	2	1	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
Sipho_Gp157	PF05565.6	gi|257052405|ref|YP_003130238.1|	-	0.023	14.2	12.9	0.24	10.9	3.5	2.2	2	0	0	2	2	2	0	Siphovirus	Gp157
bZIP_1	PF00170.16	gi|257052405|ref|YP_003130238.1|	-	0.024	14.5	3.1	0.024	14.5	2.1	2.7	2	1	0	2	2	2	0	bZIP	transcription	factor
DUF812	PF05667.6	gi|257052405|ref|YP_003130238.1|	-	0.036	12.5	23.3	0.17	10.3	7.3	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF812)
DUF904	PF06005.7	gi|257052405|ref|YP_003130238.1|	-	0.046	14.0	30.3	0.16	12.2	11.8	2.4	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF904)
Methyltransf_15	PF09445.5	gi|257052405|ref|YP_003130238.1|	-	0.047	13.2	1.0	0.55	9.7	0.7	2.5	1	1	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
DUF4618	PF15397.1	gi|257052405|ref|YP_003130238.1|	-	0.048	12.9	17.7	0.43	9.8	5.5	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4618)
Baculo_PEP_C	PF04513.7	gi|257052405|ref|YP_003130238.1|	-	0.057	13.2	12.3	1.6	8.5	0.1	2.1	2	0	0	2	2	2	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
TBPIP	PF07106.8	gi|257052405|ref|YP_003130238.1|	-	0.057	12.9	23.8	0.38	10.2	9.2	2.1	2	0	0	2	2	2	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
Seryl_tRNA_N	PF02403.17	gi|257052405|ref|YP_003130238.1|	-	0.065	13.2	21.7	0.06	13.3	1.8	2.6	2	1	0	2	2	2	0	Seryl-tRNA	synthetase	N-terminal	domain
AAA_13	PF13166.1	gi|257052405|ref|YP_003130238.1|	-	0.065	11.6	18.5	0.32	9.4	4.8	2.0	2	0	0	2	2	2	0	AAA	domain
TP_methylase	PF00590.15	gi|257052405|ref|YP_003130238.1|	-	0.068	12.8	0.3	0.068	12.8	0.2	1.9	1	1	1	2	2	2	0	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
DivIVA	PF05103.8	gi|257052405|ref|YP_003130238.1|	-	0.079	13.0	23.9	0.9	9.5	7.4	2.2	2	0	0	2	2	2	0	DivIVA	protein
GAS	PF13851.1	gi|257052405|ref|YP_003130238.1|	-	0.11	11.7	18.5	0.54	9.4	6.6	2.1	2	0	0	2	2	2	0	Growth-arrest	specific	micro-tubule	binding
DUF4337	PF14235.1	gi|257052405|ref|YP_003130238.1|	-	0.11	12.2	21.8	0.22	11.3	8.7	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4337)
MCPsignal	PF00015.16	gi|257052405|ref|YP_003130238.1|	-	0.13	11.8	19.0	0.11	12.0	2.1	2.1	1	1	1	2	2	2	0	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
DUF4446	PF14584.1	gi|257052405|ref|YP_003130238.1|	-	0.15	11.8	12.2	0.53	10.0	4.1	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4446)
Spc24	PF08286.6	gi|257052405|ref|YP_003130238.1|	-	0.16	11.7	21.9	0.28	10.8	1.0	2.2	2	0	0	2	2	2	0	Spc24	subunit	of	Ndc80
ATP-synt_D	PF01813.12	gi|257052405|ref|YP_003130238.1|	-	0.17	11.4	9.9	0.36	10.3	3.0	2.1	2	0	0	2	2	2	0	ATP	synthase	subunit	D
Laminin_II	PF06009.7	gi|257052405|ref|YP_003130238.1|	-	0.18	11.5	13.1	1.5	8.5	0.3	2.2	2	0	0	2	2	2	0	Laminin	Domain	II
TMF_TATA_bd	PF12325.3	gi|257052405|ref|YP_003130238.1|	-	0.19	11.4	22.7	0.81	9.4	2.5	2.3	2	0	0	2	2	2	0	TATA	element	modulatory	factor	1	TATA	binding
Fzo_mitofusin	PF04799.8	gi|257052405|ref|YP_003130238.1|	-	0.21	10.9	15.3	1.5	8.1	6.2	2.1	2	0	0	2	2	2	0	fzo-like	conserved	region
YlqD	PF11068.3	gi|257052405|ref|YP_003130238.1|	-	0.21	11.6	35.6	0.084	12.9	2.3	2.4	2	1	0	2	2	2	0	YlqD	protein
M	PF02370.11	gi|257052405|ref|YP_003130238.1|	-	0.22	11.9	18.5	1.4	9.5	2.5	3.5	3	0	0	3	3	2	0	M	protein	repeat
Cytochrom_C_2	PF01322.15	gi|257052405|ref|YP_003130238.1|	-	0.23	11.9	13.5	0.16	12.5	4.8	2.1	1	1	1	2	2	2	0	Cytochrome	C'
Syntaxin-6_N	PF09177.6	gi|257052405|ref|YP_003130238.1|	-	0.25	11.7	17.9	2.3	8.6	4.6	2.4	2	0	0	2	2	2	0	Syntaxin	6,	N-terminal
DUF1515	PF07439.6	gi|257052405|ref|YP_003130238.1|	-	0.26	11.0	10.3	0.95	9.2	0.1	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1515)
COG2	PF06148.6	gi|257052405|ref|YP_003130238.1|	-	0.31	10.9	12.6	2.6	7.9	0.2	2.1	2	0	0	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
DUF3450	PF11932.3	gi|257052405|ref|YP_003130238.1|	-	0.32	10.2	28.4	0.44	9.7	12.3	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3450)
Tektin	PF03148.9	gi|257052405|ref|YP_003130238.1|	-	0.34	9.4	21.9	0.086	11.3	5.9	2.2	2	0	0	2	2	2	0	Tektin	family
Spc7	PF08317.6	gi|257052405|ref|YP_003130238.1|	-	0.4	9.3	21.8	1.1	7.8	7.0	2.1	2	0	0	2	2	2	0	Spc7	kinetochore	protein
TraF_2	PF13729.1	gi|257052405|ref|YP_003130238.1|	-	0.4	9.4	11.0	0.59	8.8	4.7	2.0	1	1	1	2	2	2	0	F	plasmid	transfer	operon,	TraF,	protein
DIRP	PF06584.8	gi|257052405|ref|YP_003130238.1|	-	0.4	10.5	6.7	1	9.2	0.0	2.2	2	0	0	2	2	2	0	DIRP
DUF2730	PF10805.3	gi|257052405|ref|YP_003130238.1|	-	0.46	10.2	11.2	1.2	8.8	2.8	2.4	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2730)
ORF6C	PF10552.4	gi|257052405|ref|YP_003130238.1|	-	0.46	10.2	16.9	0.52	10.0	1.5	2.3	2	0	0	2	2	2	0	ORF6C	domain
Nup54	PF13874.1	gi|257052405|ref|YP_003130238.1|	-	0.47	10.1	18.8	0.36	10.4	0.1	2.1	2	0	0	2	2	2	0	Nucleoporin	complex	subunit	54
Fmp27_WPPW	PF10359.4	gi|257052405|ref|YP_003130238.1|	-	0.49	8.7	13.4	0.48	8.7	4.6	2.0	2	0	0	2	2	2	0	RNA	pol	II	promoter	Fmp27	protein	domain
DUF342	PF03961.8	gi|257052405|ref|YP_003130238.1|	-	0.53	8.6	18.6	1.4	7.2	1.3	2.0	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF342)
Prominin	PF05478.6	gi|257052405|ref|YP_003130238.1|	-	0.64	7.4	9.3	1.5	6.2	2.3	2.0	2	0	0	2	2	2	0	Prominin
CorA	PF01544.13	gi|257052405|ref|YP_003130238.1|	-	0.66	8.9	21.1	6.3	5.7	14.7	1.9	1	1	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
DUF724	PF05266.9	gi|257052405|ref|YP_003130238.1|	-	0.67	9.5	20.1	0.66	9.5	7.5	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF724)
DUF3829	PF12889.2	gi|257052405|ref|YP_003130238.1|	-	0.68	9.0	12.2	5.4	6.1	5.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3829)
TraB	PF01963.12	gi|257052405|ref|YP_003130238.1|	-	0.7	9.2	14.4	2.5	7.5	6.2	2.1	2	0	0	2	2	2	0	TraB	family
Mod_r	PF07200.8	gi|257052405|ref|YP_003130238.1|	-	0.72	9.7	21.4	0.64	9.9	8.4	2.1	2	0	0	2	2	2	0	Modifier	of	rudimentary	(Mod(r))	protein
YqjK	PF13997.1	gi|257052405|ref|YP_003130238.1|	-	0.76	9.9	0.0	0.76	9.9	0.0	2.7	2	1	1	3	3	1	0	YqjK-like	protein
Occludin_ELL	PF07303.8	gi|257052405|ref|YP_003130238.1|	-	0.76	10.5	13.2	3.4	8.4	4.5	2.3	2	0	0	2	2	2	0	Occludin	homology	domain
CCDC155	PF14662.1	gi|257052405|ref|YP_003130238.1|	-	0.77	9.3	32.4	1.3	8.6	15.0	2.0	1	1	1	2	2	2	0	Coiled-coil	region	of	CCDC155
STAT_alpha	PF01017.15	gi|257052405|ref|YP_003130238.1|	-	0.8	9.3	20.7	0.61	9.7	0.4	2.1	2	0	0	2	2	2	0	STAT	protein,	all-alpha	domain
Reo_sigmaC	PF04582.7	gi|257052405|ref|YP_003130238.1|	-	0.85	8.7	6.2	3.1	6.9	0.1	2.1	1	1	1	2	2	2	0	Reovirus	sigma	C	capsid	protein
DUF4164	PF13747.1	gi|257052405|ref|YP_003130238.1|	-	0.86	9.7	17.9	1.8	8.7	2.1	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4164)
Vps51	PF08700.6	gi|257052405|ref|YP_003130238.1|	-	0.87	9.4	12.2	2.9	7.7	3.6	3.1	2	2	0	2	2	2	0	Vps51/Vps67
Cep57_MT_bd	PF06657.8	gi|257052405|ref|YP_003130238.1|	-	0.88	9.5	18.1	3.7	7.5	0.3	2.4	2	0	0	2	2	2	0	Centrosome	microtubule-binding	domain	of	Cep57
AAA_23	PF13476.1	gi|257052405|ref|YP_003130238.1|	-	0.91	9.8	28.9	1.5	9.1	9.5	2.0	2	0	0	2	2	2	0	AAA	domain
DASH_Dam1	PF08653.5	gi|257052405|ref|YP_003130238.1|	-	0.96	9.2	9.8	5	6.9	2.7	2.9	2	1	0	2	2	2	0	DASH	complex	subunit	Dam1
DUF1664	PF07889.7	gi|257052405|ref|YP_003130238.1|	-	0.98	9.2	16.1	3	7.6	1.3	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1664)
EzrA	PF06160.7	gi|257052405|ref|YP_003130238.1|	-	0.99	7.5	24.2	0.44	8.6	3.1	2.1	2	0	0	2	2	2	0	Septation	ring	formation	regulator,	EzrA
RdRP_4	PF02123.11	gi|257052405|ref|YP_003130238.1|	-	1	7.9	5.1	1.1	7.8	3.5	1.1	1	0	0	1	1	1	0	Viral	RNA-directed	RNA-polymerase
Mnd1	PF03962.10	gi|257052405|ref|YP_003130238.1|	-	1.2	8.7	25.0	1.8	8.2	2.0	2.1	2	0	0	2	2	2	0	Mnd1	family
DUF3552	PF12072.3	gi|257052405|ref|YP_003130238.1|	-	1.3	8.2	28.9	2.1	7.4	12.2	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3552)
DUF4225	PF13988.1	gi|257052405|ref|YP_003130238.1|	-	1.3	8.4	14.3	2.9	7.3	0.5	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4225)
Dor1	PF04124.7	gi|257052405|ref|YP_003130238.1|	-	1.4	7.2	13.5	1.3	7.3	4.3	2.0	2	0	0	2	2	2	0	Dor1-like	family
DUF2203	PF09969.4	gi|257052405|ref|YP_003130238.1|	-	1.5	9.0	14.4	4.9	7.4	4.5	2.2	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2203)
PhoU	PF01895.14	gi|257052405|ref|YP_003130238.1|	-	1.5	9.2	10.6	8.6	6.8	0.3	2.3	2	0	0	2	2	2	0	PhoU	domain
V-ATPase_C	PF03223.10	gi|257052405|ref|YP_003130238.1|	-	1.6	7.5	7.2	10	4.8	0.1	2.2	2	0	0	2	2	2	0	V-ATPase	subunit	C
ERM	PF00769.14	gi|257052405|ref|YP_003130238.1|	-	1.7	8.1	30.9	2.6	7.5	3.9	2.1	1	1	1	2	2	2	0	Ezrin/radixin/moesin	family
DUF4140	PF13600.1	gi|257052405|ref|YP_003130238.1|	-	1.8	9.0	25.5	6.6	7.2	3.9	2.9	1	1	1	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
DUF2353	PF09789.4	gi|257052405|ref|YP_003130238.1|	-	2	7.5	18.2	0.47	9.6	1.1	2.0	1	1	0	1	1	1	0	Uncharacterized	coiled-coil	protein	(DUF2353)
Cauli_AT	PF03233.8	gi|257052405|ref|YP_003130238.1|	-	2.3	7.9	8.3	13	5.4	0.1	2.1	2	0	0	2	2	2	0	Aphid	transmission	protein
Cluap1	PF10234.4	gi|257052405|ref|YP_003130238.1|	-	2.6	7.1	16.9	1.5	7.9	6.0	2.1	2	0	0	2	2	2	0	Clusterin-associated	protein-1
FH2	PF02181.18	gi|257052405|ref|YP_003130238.1|	-	2.7	6.8	12.4	0.61	8.9	4.0	2.1	2	0	0	2	2	2	0	Formin	Homology	2	Domain
DUF1024	PF06260.7	gi|257052405|ref|YP_003130238.1|	-	2.7	8.2	15.1	0.19	11.9	1.1	2.4	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1024)
DUF848	PF05852.6	gi|257052405|ref|YP_003130238.1|	-	2.7	7.8	16.0	5.7	6.7	1.4	2.2	2	0	0	2	2	2	0	Gammaherpesvirus	protein	of	unknown	function	(DUF848)
Med15_fungi	PF05397.7	gi|257052405|ref|YP_003130238.1|	-	2.7	7.9	17.0	3.6	7.5	8.0	2.2	2	0	0	2	2	2	0	Mediator	complex	subunit	15
DAGK_cat	PF00781.19	gi|257052405|ref|YP_003130238.1|	-	2.8	7.3	5.1	0.54	9.6	0.4	1.9	2	0	0	2	2	2	0	Diacylglycerol	kinase	catalytic	domain
EMP24_GP25L	PF01105.19	gi|257052405|ref|YP_003130238.1|	-	2.9	7.5	16.3	0.87	9.2	4.9	2.2	2	0	0	2	2	2	0	emp24/gp25L/p24	family/GOLD
DUF2317	PF10079.4	gi|257052405|ref|YP_003130238.1|	-	2.9	6.3	16.3	2.5	6.5	5.7	2.0	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2317)
Jnk-SapK_ap_N	PF09744.4	gi|257052405|ref|YP_003130238.1|	-	3	7.8	16.5	1	9.3	5.1	2.1	2	0	0	2	2	2	0	JNK_SAPK-associated	protein-1
DUF3186	PF11382.3	gi|257052405|ref|YP_003130238.1|	-	3.1	6.8	14.7	5	6.1	4.8	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3186)
ADIP	PF11559.3	gi|257052405|ref|YP_003130238.1|	-	3.4	7.5	26.4	2	8.3	11.2	2.1	2	0	0	2	2	2	0	Afadin-	and	alpha	-actinin-Binding
CDC37_N	PF03234.9	gi|257052405|ref|YP_003130238.1|	-	3.7	7.8	18.5	6.7	6.9	12.8	1.4	1	1	0	1	1	1	0	Cdc37	N	terminal	kinase	binding
FbpA	PF05833.6	gi|257052405|ref|YP_003130238.1|	-	3.8	5.9	21.0	0.28	9.6	5.1	2.0	2	0	0	2	2	2	0	Fibronectin-binding	protein	A	N-terminus	(FbpA)
Osmo_CC	PF08946.5	gi|257052405|ref|YP_003130238.1|	-	3.9	7.5	30.0	0.61	10.1	7.1	3.1	2	2	2	4	4	2	0	Osmosensory	transporter	coiled	coil
DUF2072	PF09845.4	gi|257052405|ref|YP_003130238.1|	-	4.1	7.3	13.4	1.7	8.5	1.4	2.2	2	0	0	2	2	2	0	Zn-ribbon	containing	protein	(DUF2072)
Sas10_Utp3	PF04000.10	gi|257052405|ref|YP_003130238.1|	-	4.1	7.6	12.2	15	5.8	4.0	2.3	2	0	0	2	2	2	0	Sas10/Utp3/C1D	family
Synaptobrevin	PF00957.16	gi|257052405|ref|YP_003130238.1|	-	4.3	6.9	17.0	0.17	11.5	5.1	2.3	2	0	0	2	2	2	0	Synaptobrevin
DUF484	PF04340.7	gi|257052405|ref|YP_003130238.1|	-	4.6	6.6	11.6	4.1	6.8	4.7	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function,	DUF484
DUF3086	PF11285.3	gi|257052405|ref|YP_003130238.1|	-	4.7	5.9	13.4	1.8	7.3	0.4	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3086)
DUF607	PF04678.8	gi|257052405|ref|YP_003130238.1|	-	4.8	7.0	14.6	1.8	8.4	5.0	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function,	DUF607
TMF_DNA_bd	PF12329.3	gi|257052405|ref|YP_003130238.1|	-	5	7.0	24.5	4.8	7.0	8.0	2.5	2	0	0	2	2	2	0	TATA	element	modulatory	factor	1	DNA	binding
Med10	PF09748.4	gi|257052405|ref|YP_003130238.1|	-	5.4	6.8	10.8	1.1e+02	2.6	7.5	2.2	1	1	0	1	1	1	0	Transcription	factor	subunit	Med10	of	Mediator	complex
Med8	PF10232.4	gi|257052405|ref|YP_003130238.1|	-	5.4	6.4	18.3	2.7	7.4	0.6	2.0	2	0	0	2	2	2	0	Mediator	of	RNA	polymerase	II	transcription	complex	subunit	8
DUF3373	PF11853.3	gi|257052405|ref|YP_003130238.1|	-	5.4	5.4	20.8	0.96	7.9	0.8	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3373)
ACCA	PF03255.9	gi|257052405|ref|YP_003130238.1|	-	6.2	6.3	11.6	13	5.3	0.4	2.3	2	0	0	2	2	2	0	Acetyl	co-enzyme	A	carboxylase	carboxyltransferase	alpha	subunit
DUF948	PF06103.6	gi|257052405|ref|YP_003130238.1|	-	6.7	6.6	16.6	1.2	9.0	0.8	2.3	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
GrpE	PF01025.14	gi|257052405|ref|YP_003130238.1|	-	6.7	6.2	21.3	5.2	6.5	7.9	2.1	2	0	0	2	2	2	0	GrpE
Acyl-CoA_dh_C	PF12806.2	gi|257052405|ref|YP_003130238.1|	-	7	6.5	12.0	11	5.8	0.3	2.2	2	0	0	2	2	2	0	Acetyl-CoA	dehydrogenase	C-terminal	like
V_ATPase_I	PF01496.14	gi|257052405|ref|YP_003130238.1|	-	7.1	4.3	22.3	1.7	6.4	1.8	2.0	1	1	1	2	2	2	0	V-type	ATPase	116kDa	subunit	family
CCDC-167	PF15188.1	gi|257052405|ref|YP_003130238.1|	-	7.4	6.5	15.7	9.4	6.2	1.8	2.4	2	0	0	2	2	2	0	Coiled-coil	domain-containing	protein	167
Med4	PF10018.4	gi|257052405|ref|YP_003130238.1|	-	7.5	5.8	21.2	4.5	6.6	2.3	2.3	2	0	0	2	2	2	0	Vitamin-D-receptor	interacting	Mediator	subunit	4
WXG100	PF06013.7	gi|257052405|ref|YP_003130238.1|	-	8	6.5	27.4	1.3	9.0	2.1	2.5	2	0	0	2	2	2	0	Proteins	of	100	residues	with	WXG
Nsp1_C	PF05064.8	gi|257052405|ref|YP_003130238.1|	-	8.3	6.0	28.8	1.2	8.8	2.3	2.2	2	0	0	2	2	2	0	Nsp1-like	C-terminal	region
T2SM	PF04612.7	gi|257052405|ref|YP_003130238.1|	-	8.3	6.1	17.0	3.9	7.2	0.1	2.3	2	0	0	2	2	2	0	Type	II	secretion	system	(T2SS),	protein	M
Sec5	PF15469.1	gi|257052405|ref|YP_003130238.1|	-	8.7	6.0	13.2	5	6.8	2.2	2.5	1	1	0	2	2	2	0	Exocyst	complex	component	Sec5
DUF4559	PF15112.1	gi|257052405|ref|YP_003130238.1|	-	8.7	5.4	17.0	7.9	5.5	7.1	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4559)
DUF722	PF05263.6	gi|257052405|ref|YP_003130238.1|	-	9.1	6.4	9.8	5.7	7.0	0.4	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF722)
Not3	PF04065.10	gi|257052405|ref|YP_003130238.1|	-	9.3	5.4	22.0	0.89	8.7	8.3	2.1	2	0	0	2	2	2	0	Not1	N-terminal	domain,	CCR4-Not	complex	component
DUF2400	PF09674.5	gi|257052405|ref|YP_003130238.1|	-	9.4	5.8	9.5	14	5.2	0.3	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2400)
Ribosomal_L18ae	PF01775.12	gi|257052406|ref|YP_003130239.1|	-	1.4e-09	37.8	0.0	1.5e-09	37.7	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	L18ae/LX	protein	domain
Aldolase	PF01081.14	gi|257052407|ref|YP_003130240.1|	-	3.7e-41	140.4	1.5	4.2e-41	140.2	1.1	1.0	1	0	0	1	1	1	1	KDPG	and	KHG	aldolase
TMP-TENI	PF02581.12	gi|257052407|ref|YP_003130240.1|	-	0.00057	19.0	1.3	0.0074	15.4	0.9	2.8	1	1	0	1	1	1	1	Thiamine	monophosphate	synthase/TENI
DHO_dh	PF01180.16	gi|257052407|ref|YP_003130240.1|	-	0.0067	15.4	3.9	0.83	8.5	0.1	3.0	1	1	1	3	3	3	3	Dihydroorotate	dehydrogenase
TIM-br_sig_trns	PF09370.5	gi|257052407|ref|YP_003130240.1|	-	0.018	14.0	0.1	0.035	13.1	0.1	1.5	1	1	0	1	1	1	0	TIM-barrel	signal	transduction	protein
NMO	PF03060.10	gi|257052407|ref|YP_003130240.1|	-	0.07	12.2	0.0	0.07	12.2	0.0	2.5	2	1	1	3	3	3	0	Nitronate	monooxygenase
DUF1814	PF08843.6	gi|257052409|ref|YP_003130242.1|	-	3.2e-13	50.0	0.2	4.4e-13	49.5	0.1	1.2	1	0	0	1	1	1	1	Nucleotidyl	transferase	of	unknown	function	(DUF1814)
DUF4095	PF13338.1	gi|257052410|ref|YP_003130243.1|	-	0.003	17.6	0.0	0.0063	16.6	0.0	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4095)
Mrr_N	PF14338.1	gi|257052410|ref|YP_003130243.1|	-	0.13	12.3	0.0	0.37	10.8	0.0	1.7	2	0	0	2	2	2	0	Mrr	N-terminal	domain
Aldo_ket_red	PF00248.16	gi|257052411|ref|YP_003130244.1|	-	4.9e-25	87.9	0.0	5.9e-25	87.6	0.0	1.1	1	0	0	1	1	1	1	Aldo/keto	reductase	family
Methyltransf_11	PF08241.7	gi|257052412|ref|YP_003130245.1|	-	1.4e-11	44.7	0.0	2.2e-11	44.0	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|257052412|ref|YP_003130245.1|	-	3.9e-08	33.5	0.0	6.5e-08	32.8	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|257052412|ref|YP_003130245.1|	-	5e-05	23.3	3.7	0.00012	22.0	2.5	1.9	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|257052412|ref|YP_003130245.1|	-	9.1e-05	23.0	0.2	0.00017	22.1	0.1	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|257052412|ref|YP_003130245.1|	-	0.00071	19.3	0.0	0.00091	18.9	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|257052412|ref|YP_003130245.1|	-	0.0043	17.5	0.0	0.0072	16.7	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_24	PF13578.1	gi|257052412|ref|YP_003130245.1|	-	0.005	17.6	0.7	0.015	16.1	0.1	2.0	2	1	0	2	2	2	1	Methyltransferase	domain
RrnaAD	PF00398.15	gi|257052412|ref|YP_003130245.1|	-	0.0058	15.6	0.0	0.008	15.2	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
CMAS	PF02353.15	gi|257052412|ref|YP_003130245.1|	-	0.0062	15.6	0.0	0.0087	15.1	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Ubie_methyltran	PF01209.13	gi|257052412|ref|YP_003130245.1|	-	0.028	13.5	0.0	0.042	12.9	0.0	1.2	1	0	0	1	1	1	0	ubiE/COQ5	methyltransferase	family
Polyketide_cyc2	PF10604.4	gi|257052413|ref|YP_003130246.1|	-	8.6e-07	29.2	0.9	1e-06	28.9	0.6	1.1	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
YceI	PF04264.8	gi|257052413|ref|YP_003130246.1|	-	0.12	12.3	0.5	0.49	10.3	0.3	1.8	1	1	0	1	1	1	0	YceI-like	domain
HTH_10	PF04967.7	gi|257052414|ref|YP_003130247.1|	-	3e-18	65.1	0.1	1.4e-17	62.9	0.0	2.1	2	0	0	2	2	2	1	HTH	DNA	binding	domain
DNA_photolyase	PF00875.13	gi|257052414|ref|YP_003130247.1|	-	0.021	14.5	0.1	0.032	13.9	0.1	1.3	1	1	0	1	1	1	0	DNA	photolyase
HTH_IclR	PF09339.5	gi|257052414|ref|YP_003130247.1|	-	0.035	13.7	0.4	0.11	12.1	0.0	2.0	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
MarR_2	PF12802.2	gi|257052414|ref|YP_003130247.1|	-	0.12	12.0	0.1	0.36	10.5	0.0	1.9	2	0	0	2	2	2	0	MarR	family
PuR_N	PF09182.5	gi|257052414|ref|YP_003130247.1|	-	0.12	11.9	0.0	0.22	11.1	0.0	1.4	1	0	0	1	1	1	0	Bacterial	purine	repressor,	N-terminal
DUF217	PF02697.9	gi|257052415|ref|YP_003130248.1|	-	3.9e-15	55.8	1.2	4.8e-15	55.5	0.8	1.1	1	0	0	1	1	1	1	Uncharacterized	ACR,	COG1753
RHH_1	PF01402.16	gi|257052415|ref|YP_003130248.1|	-	0.31	11.0	3.7	0.67	9.9	0.3	2.4	2	1	0	2	2	2	0	Ribbon-helix-helix	protein,	copG	family
Unstab_antitox	PF09720.5	gi|257052415|ref|YP_003130248.1|	-	1.2	8.9	4.8	4.9	6.9	0.3	2.2	2	0	0	2	2	2	0	Putative	addiction	module	component
PIN	PF01850.16	gi|257052416|ref|YP_003130249.1|	-	1.6e-12	47.8	0.1	1.8e-12	47.6	0.0	1.0	1	0	0	1	1	1	1	PIN	domain
PIN_3	PF13470.1	gi|257052416|ref|YP_003130249.1|	-	0.073	13.7	0.2	0.092	13.4	0.1	1.3	1	1	0	1	1	1	0	PIN	domain
Inositol_P	PF00459.20	gi|257052417|ref|YP_003130250.1|	-	2.2e-46	158.3	0.6	2.7e-46	158.0	0.4	1.0	1	0	0	1	1	1	1	Inositol	monophosphatase	family
FBPase	PF00316.15	gi|257052417|ref|YP_003130250.1|	-	0.065	12.0	0.0	0.094	11.5	0.0	1.2	1	0	0	1	1	1	0	Fructose-1-6-bisphosphatase
ABC2_membrane	PF01061.19	gi|257052418|ref|YP_003130251.1|	-	7.2e-25	87.3	8.2	9.2e-25	87.0	5.7	1.2	1	0	0	1	1	1	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.2	gi|257052418|ref|YP_003130251.1|	-	1.4e-13	50.5	14.3	2.2e-13	49.9	9.9	1.2	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.2	gi|257052418|ref|YP_003130251.1|	-	0.00013	21.1	13.8	0.00023	20.3	9.6	1.4	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
T2SF	PF00482.18	gi|257052418|ref|YP_003130251.1|	-	0.018	14.9	2.2	0.044	13.7	1.5	1.7	1	0	0	1	1	1	0	Type	II	secretion	system	(T2SS),	protein	F
ABC_tran	PF00005.22	gi|257052419|ref|YP_003130252.1|	-	4.2e-31	108.0	0.0	6.4e-31	107.4	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|257052419|ref|YP_003130252.1|	-	2.2e-15	57.3	0.0	6.2e-10	39.5	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
DUF4162	PF13732.1	gi|257052419|ref|YP_003130252.1|	-	3.7e-05	24.1	0.0	7.6e-05	23.1	0.0	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4162)
AAA_29	PF13555.1	gi|257052419|ref|YP_003130252.1|	-	0.00098	18.6	0.1	0.0022	17.4	0.1	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
SRP54	PF00448.17	gi|257052419|ref|YP_003130252.1|	-	0.0029	17.0	0.0	0.0058	16.0	0.0	1.5	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
AAA	PF00004.24	gi|257052419|ref|YP_003130252.1|	-	0.0037	17.4	0.0	0.01	16.0	0.0	1.9	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.1	gi|257052419|ref|YP_003130252.1|	-	0.0059	16.6	0.1	0.019	14.9	0.0	2.1	1	1	0	1	1	1	1	AAA	ATPase	domain
SbcCD_C	PF13558.1	gi|257052419|ref|YP_003130252.1|	-	0.0092	15.8	0.0	0.025	14.4	0.0	1.8	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_23	PF13476.1	gi|257052419|ref|YP_003130252.1|	-	0.012	15.9	0.0	0.018	15.3	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.1	gi|257052419|ref|YP_003130252.1|	-	0.046	13.6	0.2	0.32	10.8	0.2	2.2	1	1	0	1	1	1	0	AAA	domain
Glyco_hydro_cc	PF11790.3	gi|257052420|ref|YP_003130253.1|	-	2.9e-09	36.7	0.0	4.5e-09	36.0	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	hydrolase	catalytic	core
Glyco_hydro_42	PF02449.10	gi|257052420|ref|YP_003130253.1|	-	0.0019	17.4	0.1	0.0086	15.2	0.0	2.0	3	0	0	3	3	3	1	Beta-galactosidase
HTH_10	PF04967.7	gi|257052421|ref|YP_003130254.1|	-	5.3e-15	54.7	0.1	8.8e-15	54.0	0.0	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Sigma70_r4_2	PF08281.7	gi|257052421|ref|YP_003130254.1|	-	0.00086	18.7	0.1	0.013	14.9	0.1	2.2	1	1	0	1	1	1	1	Sigma-70,	region	4
MarR_2	PF12802.2	gi|257052421|ref|YP_003130254.1|	-	0.0015	18.1	0.0	0.05	13.2	0.0	3.0	3	0	0	3	3	3	1	MarR	family
HTH_23	PF13384.1	gi|257052421|ref|YP_003130254.1|	-	0.014	15.0	0.0	0.027	14.1	0.0	1.5	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_24	PF13412.1	gi|257052421|ref|YP_003130254.1|	-	0.034	13.5	0.0	0.072	12.4	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Sigma70_r4	PF04545.11	gi|257052421|ref|YP_003130254.1|	-	0.062	12.6	0.0	0.11	11.7	0.0	1.4	1	0	0	1	1	1	0	Sigma-70,	region	4
MFS_1	PF07690.11	gi|257052422|ref|YP_003130255.1|	-	4.2e-28	98.0	48.0	3.7e-19	68.6	13.0	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
DUF1228	PF06779.9	gi|257052422|ref|YP_003130255.1|	-	0.00067	19.6	3.3	0.00067	19.6	2.3	3.4	3	0	0	3	3	3	1	Protein	of	unknown	function	(DUF1228)
Regulator_TrmB	PF11495.3	gi|257052423|ref|YP_003130256.1|	-	6e-39	133.4	0.0	7.7e-39	133.0	0.0	1.1	1	0	0	1	1	1	1	Archaeal	transcriptional	regulator	TrmB
TrmB	PF01978.14	gi|257052423|ref|YP_003130256.1|	-	2.6e-14	52.6	0.0	5.8e-14	51.5	0.0	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.5	gi|257052423|ref|YP_003130256.1|	-	0.012	15.2	0.0	0.027	14.0	0.0	1.6	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
PadR	PF03551.9	gi|257052423|ref|YP_003130256.1|	-	0.026	14.2	0.0	0.061	13.0	0.0	1.6	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
MarR_2	PF12802.2	gi|257052423|ref|YP_003130256.1|	-	0.036	13.7	0.0	0.1	12.2	0.0	1.8	1	0	0	1	1	1	0	MarR	family
HTH_20	PF12840.2	gi|257052423|ref|YP_003130256.1|	-	0.045	13.5	0.0	0.13	12.1	0.0	1.9	1	1	0	1	1	1	0	Helix-turn-helix	domain
DUF2250	PF10007.4	gi|257052423|ref|YP_003130256.1|	-	0.093	12.6	0.0	0.34	10.8	0.0	2.0	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
FMN_bind	PF04205.9	gi|257052423|ref|YP_003130256.1|	-	0.12	12.5	0.0	2.1	8.5	0.0	2.8	3	1	0	3	3	3	0	FMN-binding	domain
2-Hacid_dh_C	PF02826.14	gi|257052425|ref|YP_003130258.1|	-	2.1e-49	167.0	0.0	3.6e-49	166.3	0.0	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.25	gi|257052425|ref|YP_003130258.1|	-	4.9e-33	113.4	0.3	1.9e-32	111.5	0.1	2.0	3	0	0	3	3	3	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
ACT	PF01842.20	gi|257052425|ref|YP_003130258.1|	-	1.9e-06	27.2	0.0	1e-05	24.8	0.0	2.3	1	0	0	1	1	1	1	ACT	domain
Peptidase_M48	PF01435.13	gi|257052426|ref|YP_003130259.1|	-	5.9e-40	137.2	0.0	1.3e-39	136.0	0.0	1.6	1	1	0	1	1	1	1	Peptidase	family	M48
DUF2268	PF10026.4	gi|257052426|ref|YP_003130259.1|	-	0.023	14.0	0.0	0.25	10.7	0.0	2.0	2	0	0	2	2	2	0	Predicted	Zn-dependent	protease	(DUF2268)
DUF3113	PF11310.3	gi|257052426|ref|YP_003130259.1|	-	0.16	11.7	0.0	0.33	10.6	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3113)
Peptidase_M56	PF05569.6	gi|257052426|ref|YP_003130259.1|	-	1.3	7.9	4.7	2.5	7.0	0.0	2.9	3	1	0	3	3	3	0	BlaR1	peptidase	M56
DnaJ	PF00226.26	gi|257052427|ref|YP_003130260.1|	-	3.1e-12	46.0	0.0	5e-12	45.3	0.0	1.4	1	0	0	1	1	1	1	DnaJ	domain
UBA	PF00627.26	gi|257052427|ref|YP_003130260.1|	-	0.034	14.0	0.0	0.07	12.9	0.0	1.5	1	0	0	1	1	1	0	UBA/TS-N	domain
RPT	PF13446.1	gi|257052427|ref|YP_003130260.1|	-	0.1	12.0	0.0	0.17	11.2	0.0	1.5	1	0	0	1	1	1	0	A	repeated	domain	in	UCH-protein
DUF1469	PF07332.6	gi|257052427|ref|YP_003130260.1|	-	0.16	11.7	8.0	0.24	11.1	5.6	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1469)
Sensor	PF13796.1	gi|257052427|ref|YP_003130260.1|	-	6.1	6.4	11.6	0.72	9.4	4.6	1.8	1	1	1	2	2	2	0	Putative	sensor
NAD_synthase	PF02540.12	gi|257052428|ref|YP_003130261.1|	-	6.3e-81	270.8	0.0	8e-81	270.5	0.0	1.0	1	0	0	1	1	1	1	NAD	synthase
tRNA_Me_trans	PF03054.11	gi|257052428|ref|YP_003130261.1|	-	9.4e-08	30.9	0.0	1.6e-05	23.6	0.0	2.1	2	0	0	2	2	2	2	tRNA	methyl	transferase
Asn_synthase	PF00733.16	gi|257052428|ref|YP_003130261.1|	-	3.6e-05	23.4	0.0	6.1e-05	22.6	0.0	1.4	1	0	0	1	1	1	1	Asparagine	synthase
HTH_28	PF13518.1	gi|257052428|ref|YP_003130261.1|	-	0.0035	17.3	0.0	0.024	14.6	0.0	2.1	2	0	0	2	2	2	1	Helix-turn-helix	domain
DUF3590	PF12148.3	gi|257052428|ref|YP_003130261.1|	-	0.0038	16.8	0.1	0.03	13.9	0.0	2.2	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF3590)
QueC	PF06508.8	gi|257052428|ref|YP_003130261.1|	-	0.0046	16.2	0.0	0.034	13.4	0.0	2.0	2	0	0	2	2	2	1	Queuosine	biosynthesis	protein	QueC
HTH_29	PF13551.1	gi|257052428|ref|YP_003130261.1|	-	0.018	15.1	0.0	0.054	13.6	0.0	1.8	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_23	PF13384.1	gi|257052428|ref|YP_003130261.1|	-	0.057	13.0	0.4	1.4	8.7	0.0	2.9	3	0	0	3	3	3	0	Homeodomain-like	domain
Cyclase	PF04199.8	gi|257052430|ref|YP_003130263.1|	-	8.9e-26	90.5	1.0	1.4e-25	89.9	0.7	1.3	1	0	0	1	1	1	1	Putative	cyclase
HTH_AsnC-type	PF13404.1	gi|257052431|ref|YP_003130264.1|	-	8.4e-15	54.0	1.3	1.5e-14	53.2	0.9	1.4	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.1	gi|257052431|ref|YP_003130264.1|	-	8.5e-14	50.6	0.0	1.2e-13	50.1	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
AsnC_trans_reg	PF01037.16	gi|257052431|ref|YP_003130264.1|	-	2.5e-08	33.5	0.9	4.5e-08	32.6	0.2	1.7	2	0	0	2	2	2	1	AsnC	family
HTH_20	PF12840.2	gi|257052431|ref|YP_003130264.1|	-	0.00011	21.9	0.1	0.00022	20.9	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|257052431|ref|YP_003130264.1|	-	0.00016	21.3	0.2	0.00028	20.4	0.1	1.4	1	0	0	1	1	1	1	MarR	family
HTH_Tnp_ISL3	PF13542.1	gi|257052431|ref|YP_003130264.1|	-	0.00048	19.2	0.5	0.038	13.1	0.0	2.8	2	1	0	2	2	2	1	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_11	PF08279.7	gi|257052431|ref|YP_003130264.1|	-	0.00067	19.2	0.0	0.0013	18.3	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
TrmB	PF01978.14	gi|257052431|ref|YP_003130264.1|	-	0.0044	16.7	0.0	0.0079	15.8	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.15	gi|257052431|ref|YP_003130264.1|	-	0.006	16.2	0.0	0.0084	15.7	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_DeoR	PF08220.7	gi|257052431|ref|YP_003130264.1|	-	0.011	15.2	0.0	0.02	14.4	0.0	1.4	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
MarR	PF01047.17	gi|257052431|ref|YP_003130264.1|	-	0.012	15.2	0.0	0.022	14.4	0.0	1.5	1	0	0	1	1	1	0	MarR	family
Rrf2	PF02082.15	gi|257052431|ref|YP_003130264.1|	-	0.013	15.5	0.0	0.024	14.7	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	regulator
ADH_zinc_N	PF00107.21	gi|257052431|ref|YP_003130264.1|	-	0.024	14.2	1.1	0.057	12.9	0.8	1.7	1	1	0	1	1	1	0	Zinc-binding	dehydrogenase
HTH_Crp_2	PF13545.1	gi|257052431|ref|YP_003130264.1|	-	0.052	13.3	0.0	0.095	12.5	0.0	1.4	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
GYD	PF08734.6	gi|257052431|ref|YP_003130264.1|	-	0.061	13.0	0.2	0.17	11.6	0.1	1.7	1	0	0	1	1	1	0	GYD	domain
HTH_IclR	PF09339.5	gi|257052431|ref|YP_003130264.1|	-	0.068	12.7	0.1	0.11	12.0	0.1	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_29	PF13551.1	gi|257052431|ref|YP_003130264.1|	-	0.071	13.2	0.1	0.13	12.4	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn	helix
FeoC	PF09012.5	gi|257052431|ref|YP_003130264.1|	-	0.075	12.7	0.0	0.12	12.1	0.0	1.2	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
GHMP_kinases_C	PF08544.8	gi|257052431|ref|YP_003130264.1|	-	0.11	12.7	0.0	0.26	11.5	0.0	1.6	2	0	0	2	2	2	0	GHMP	kinases	C	terminal
HTH_23	PF13384.1	gi|257052431|ref|YP_003130264.1|	-	0.11	12.1	0.0	0.2	11.3	0.0	1.4	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_27	PF13463.1	gi|257052431|ref|YP_003130264.1|	-	0.11	12.7	0.0	0.24	11.7	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
P-II	PF00543.17	gi|257052432|ref|YP_003130265.1|	-	2.9e-34	117.5	0.2	3.4e-34	117.3	0.1	1.0	1	0	0	1	1	1	1	Nitrogen	regulatory	protein	P-II
Methyltrans_RNA	PF04452.9	gi|257052432|ref|YP_003130265.1|	-	0.022	13.8	0.0	0.033	13.3	0.0	1.3	1	1	0	1	1	1	0	RNA	methyltransferase
CoA_binding_2	PF13380.1	gi|257052432|ref|YP_003130265.1|	-	0.035	14.2	1.2	2.2	8.4	0.0	2.1	1	1	1	2	2	2	0	CoA	binding	domain
Ammonium_transp	PF00909.16	gi|257052433|ref|YP_003130266.1|	-	1.6e-92	310.0	34.6	2.1e-92	309.6	24.0	1.1	1	0	0	1	1	1	1	Ammonium	Transporter	Family
PsbY	PF06298.6	gi|257052433|ref|YP_003130266.1|	-	0.31	10.6	5.0	0.36	10.4	0.3	2.7	2	0	0	2	2	2	0	Photosystem	II	protein	Y	(PsbY)
XhlA	PF10779.4	gi|257052433|ref|YP_003130266.1|	-	1.1	9.2	3.7	11	5.9	0.2	2.8	2	0	0	2	2	2	0	Haemolysin	XhlA
HTH_AsnC-type	PF13404.1	gi|257052434|ref|YP_003130267.1|	-	3.8e-13	48.7	3.5	3.8e-13	48.7	2.4	1.9	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.1	gi|257052434|ref|YP_003130267.1|	-	2.5e-12	45.9	0.0	4.1e-12	45.2	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
AsnC_trans_reg	PF01037.16	gi|257052434|ref|YP_003130267.1|	-	1.1e-10	41.0	1.2	1.3e-10	40.7	0.2	1.6	2	0	0	2	2	2	1	AsnC	family
HTH_20	PF12840.2	gi|257052434|ref|YP_003130267.1|	-	1.3e-05	24.8	1.0	3.1e-05	23.7	0.1	2.1	3	0	0	3	3	3	1	Helix-turn-helix	domain
HTH_DeoR	PF08220.7	gi|257052434|ref|YP_003130267.1|	-	5.3e-05	22.6	0.0	8.7e-05	21.9	0.0	1.3	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
MarR_2	PF12802.2	gi|257052434|ref|YP_003130267.1|	-	0.0018	17.8	0.2	0.0036	16.9	0.1	1.5	1	0	0	1	1	1	1	MarR	family
HTH_Crp_2	PF13545.1	gi|257052434|ref|YP_003130267.1|	-	0.0018	17.9	0.0	0.0032	17.2	0.0	1.4	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_23	PF13384.1	gi|257052434|ref|YP_003130267.1|	-	0.0019	17.8	0.1	0.036	13.7	0.0	2.2	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_5	PF01022.15	gi|257052434|ref|YP_003130267.1|	-	0.0031	17.1	0.0	0.0051	16.4	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.17	gi|257052434|ref|YP_003130267.1|	-	0.0056	16.3	0.0	0.0089	15.7	0.0	1.4	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.14	gi|257052434|ref|YP_003130267.1|	-	0.0058	16.3	0.0	0.012	15.3	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.7	gi|257052434|ref|YP_003130267.1|	-	0.0097	15.5	0.0	0.016	14.8	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
HTH_Tnp_ISL3	PF13542.1	gi|257052434|ref|YP_003130267.1|	-	0.022	13.9	0.9	0.89	8.7	0.0	2.9	3	0	0	3	3	3	0	Helix-turn-helix	domain	of	transposase	family	ISL3
Rrf2	PF02082.15	gi|257052434|ref|YP_003130267.1|	-	0.025	14.7	0.0	0.052	13.6	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator
Lon_2	PF13337.1	gi|257052434|ref|YP_003130267.1|	-	0.055	11.8	0.0	0.065	11.5	0.0	1.1	1	0	0	1	1	1	0	Putative	ATP-dependent	Lon	protease
Fe_dep_repress	PF01325.14	gi|257052434|ref|YP_003130267.1|	-	0.061	13.2	0.0	0.12	12.2	0.0	1.5	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
TPR_9	PF13371.1	gi|257052434|ref|YP_003130267.1|	-	0.065	13.1	0.7	0.14	12.0	0.5	1.5	1	0	0	1	1	1	0	Tetratricopeptide	repeat
HTH_7	PF02796.10	gi|257052434|ref|YP_003130267.1|	-	0.074	12.9	0.0	0.36	10.7	0.0	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	resolvase
TFIIE_alpha	PF02002.12	gi|257052434|ref|YP_003130267.1|	-	0.11	11.9	0.0	0.17	11.3	0.0	1.4	1	0	0	1	1	1	0	TFIIE	alpha	subunit
HTH_9	PF08221.6	gi|257052434|ref|YP_003130267.1|	-	0.14	12.0	0.1	2.5	8.0	0.0	2.3	2	0	0	2	2	2	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
RuvB_C	PF05491.8	gi|257052434|ref|YP_003130267.1|	-	0.14	11.7	0.1	0.27	10.8	0.1	1.4	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	ruvB	C-terminus
P-II	PF00543.17	gi|257052435|ref|YP_003130268.1|	-	5.4e-34	116.7	0.3	6.2e-34	116.5	0.2	1.0	1	0	0	1	1	1	1	Nitrogen	regulatory	protein	P-II
Methyltrans_RNA	PF04452.9	gi|257052435|ref|YP_003130268.1|	-	0.026	13.6	0.0	0.029	13.4	0.0	1.2	1	0	0	1	1	1	0	RNA	methyltransferase
CoA_binding_2	PF13380.1	gi|257052435|ref|YP_003130268.1|	-	0.16	12.1	0.8	3.8	7.6	0.0	2.0	1	1	1	2	2	2	0	CoA	binding	domain
Ammonium_transp	PF00909.16	gi|257052436|ref|YP_003130269.1|	-	2.7e-101	338.9	35.4	3.1e-101	338.7	24.6	1.0	1	0	0	1	1	1	1	Ammonium	Transporter	Family
P-II	PF00543.17	gi|257052437|ref|YP_003130270.1|	-	5e-34	116.8	0.1	5.7e-34	116.6	0.0	1.0	1	0	0	1	1	1	1	Nitrogen	regulatory	protein	P-II
FAD_binding_4	PF01565.18	gi|257052437|ref|YP_003130270.1|	-	6.8e-05	22.3	0.2	0.027	13.9	0.0	2.1	1	1	1	2	2	2	2	FAD	binding	domain
ALAD	PF00490.16	gi|257052438|ref|YP_003130271.1|	-	1.9e-141	470.6	0.1	2.2e-141	470.4	0.1	1.0	1	0	0	1	1	1	1	Delta-aminolevulinic	acid	dehydratase
Glyco_transf_36	PF06165.6	gi|257052439|ref|YP_003130272.1|	-	8.9e-34	115.6	0.0	2.5e-33	114.2	0.0	1.8	2	0	0	2	2	2	1	Glycosyltransferase	family	36
GT36_AF	PF06205.6	gi|257052439|ref|YP_003130272.1|	-	9.8e-24	82.9	0.0	3e-23	81.3	0.0	1.9	1	0	0	1	1	1	1	Glycosyltransferase	36	associated	family
CBM_X	PF06204.6	gi|257052439|ref|YP_003130272.1|	-	2.6e-23	81.2	0.6	6.2e-23	80.0	0.4	1.7	1	0	0	1	1	1	1	Putative	carbohydrate	binding	domain
DUF608	PF04685.8	gi|257052439|ref|YP_003130272.1|	-	0.00084	18.1	0.0	0.0013	17.4	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF608
Glyco_transf_36	PF06165.6	gi|257052440|ref|YP_003130273.1|	-	2.6e-33	114.1	0.0	5.8e-33	113.0	0.0	1.6	1	0	0	1	1	1	1	Glycosyltransferase	family	36
CBM_X	PF06204.6	gi|257052440|ref|YP_003130273.1|	-	2.5e-22	78.1	0.6	5.7e-22	76.9	0.4	1.7	1	0	0	1	1	1	1	Putative	carbohydrate	binding	domain
GT36_AF	PF06205.6	gi|257052440|ref|YP_003130273.1|	-	5.1e-16	58.1	0.0	1.2e-15	57.0	0.0	1.6	1	0	0	1	1	1	1	Glycosyltransferase	36	associated	family
DUF608	PF04685.8	gi|257052440|ref|YP_003130273.1|	-	0.00065	18.5	0.1	0.0012	17.5	0.1	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF608
Mitofilin	PF09731.4	gi|257052441|ref|YP_003130274.1|	-	9	4.8	10.2	12	4.4	7.1	1.1	1	0	0	1	1	1	0	Mitochondrial	inner	membrane	protein
bPH_2	PF03703.9	gi|257052442|ref|YP_003130275.1|	-	1.6e-12	47.2	0.2	2.8e-12	46.4	0.1	1.3	1	0	0	1	1	1	1	Bacterial	PH	domain
CbtA	PF09490.5	gi|257052442|ref|YP_003130275.1|	-	0.02	14.2	1.6	0.031	13.5	1.1	1.2	1	0	0	1	1	1	0	Probable	cobalt	transporter	subunit	(CbtA)
DUF998	PF06197.8	gi|257052442|ref|YP_003130275.1|	-	0.085	12.1	5.3	0.14	11.4	3.7	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF998)
PIN	PF01850.16	gi|257052443|ref|YP_003130276.1|	-	1e-07	32.3	0.1	1.3e-07	31.9	0.0	1.1	1	0	0	1	1	1	1	PIN	domain
DUF217	PF02697.9	gi|257052444|ref|YP_003130277.1|	-	7.2e-09	35.7	1.4	8.3e-09	35.5	0.9	1.2	1	0	0	1	1	1	1	Uncharacterized	ACR,	COG1753
DUF4349	PF14257.1	gi|257052444|ref|YP_003130277.1|	-	0.0021	17.3	2.9	0.0022	17.2	2.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4349)
RHH_1	PF01402.16	gi|257052444|ref|YP_003130277.1|	-	0.044	13.6	0.7	0.044	13.6	0.5	2.8	2	1	1	3	3	3	0	Ribbon-helix-helix	protein,	copG	family
BLOC1_2	PF10046.4	gi|257052444|ref|YP_003130277.1|	-	0.046	13.8	0.3	0.071	13.2	0.1	1.3	1	1	0	1	1	1	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Rotamase	PF00639.16	gi|257052444|ref|YP_003130277.1|	-	0.14	12.9	0.2	0.16	12.7	0.2	1.1	1	0	0	1	1	1	0	PPIC-type	PPIASE	domain
DUF2890	PF11081.3	gi|257052444|ref|YP_003130277.1|	-	0.18	11.8	1.9	0.18	11.8	1.3	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2890)
Hemerythrin	PF01814.18	gi|257052444|ref|YP_003130277.1|	-	0.22	11.7	3.7	0.51	10.4	2.5	1.6	1	1	0	1	1	1	0	Hemerythrin	HHE	cation	binding	domain
Metal_resist	PF13801.1	gi|257052444|ref|YP_003130277.1|	-	0.81	9.6	4.4	3.8	7.5	2.5	1.9	1	1	1	2	2	2	0	Heavy-metal	resistance
DUF4149	PF13664.1	gi|257052445|ref|YP_003130278.1|	-	1.7	8.7	7.4	2.1	8.4	3.3	2.5	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4149)
Glyco_hydro_3	PF00933.16	gi|257052446|ref|YP_003130279.1|	-	1.7e-78	263.6	0.0	2.2e-78	263.3	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	N	terminal	domain
Glyco_hydro_3_C	PF01915.17	gi|257052446|ref|YP_003130279.1|	-	4.6e-54	183.3	0.0	1.1e-53	182.0	0.0	1.6	2	0	0	2	2	2	1	Glycosyl	hydrolase	family	3	C-terminal	domain
Fn3-like	PF14310.1	gi|257052446|ref|YP_003130279.1|	-	3.3e-13	49.3	0.1	7.2e-13	48.2	0.0	1.5	1	0	0	1	1	1	1	Fibronectin	type	III-like	domain
Aldedh	PF00171.17	gi|257052447|ref|YP_003130280.1|	-	1.8e-27	95.8	2.4	2.5e-22	78.8	0.7	2.2	2	0	0	2	2	2	2	Aldehyde	dehydrogenase	family
AA_kinase	PF00696.23	gi|257052448|ref|YP_003130281.1|	-	1.4e-39	136.1	3.5	1.6e-39	135.9	2.4	1.0	1	0	0	1	1	1	1	Amino	acid	kinase	family
P5CR_dimer	PF14748.1	gi|257052449|ref|YP_003130282.1|	-	1.2e-33	115.2	1.6	1.2e-33	115.2	1.1	1.8	2	0	0	2	2	2	1	Pyrroline-5-carboxylate	reductase	dimerisation
F420_oxidored	PF03807.12	gi|257052449|ref|YP_003130282.1|	-	1.5e-13	50.9	0.4	4.4e-13	49.4	0.3	1.8	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_2	PF03446.10	gi|257052449|ref|YP_003130282.1|	-	9e-07	28.8	0.3	2.2e-06	27.5	0.1	1.8	1	1	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
TrkA_N	PF02254.13	gi|257052449|ref|YP_003130282.1|	-	9e-05	22.4	0.9	0.00024	21.0	0.4	1.9	2	0	0	2	2	2	1	TrkA-N	domain
PDH	PF02153.12	gi|257052449|ref|YP_003130282.1|	-	0.00014	20.8	0.3	0.013	14.3	0.1	2.1	2	0	0	2	2	2	2	Prephenate	dehydrogenase
UDPG_MGDP_dh_N	PF03721.9	gi|257052449|ref|YP_003130282.1|	-	0.0003	20.2	1.0	0.0012	18.3	0.1	2.3	2	1	1	3	3	3	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
3HCDH_N	PF02737.13	gi|257052449|ref|YP_003130282.1|	-	0.00048	19.8	0.3	0.00048	19.8	0.2	2.0	2	1	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_Gly3P_dh_N	PF01210.18	gi|257052449|ref|YP_003130282.1|	-	0.0006	19.5	1.4	0.036	13.8	0.7	2.5	2	1	0	2	2	2	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
XdhC_C	PF13478.1	gi|257052449|ref|YP_003130282.1|	-	0.012	15.9	0.1	0.044	14.0	0.0	2.0	1	1	0	2	2	2	0	XdhC	Rossmann	domain
Rossmann-like	PF10727.4	gi|257052449|ref|YP_003130282.1|	-	0.091	12.4	7.6	0.017	14.8	2.2	2.1	2	1	0	2	2	2	0	Rossmann-like	domain
TetR_C_6	PF13977.1	gi|257052450|ref|YP_003130283.1|	-	2e-10	40.6	2.3	3.7e-10	39.8	1.6	1.4	1	0	0	1	1	1	1	Bacterial	transcriptional	repressor
TetR_N	PF00440.18	gi|257052450|ref|YP_003130283.1|	-	4.7e-10	38.9	0.0	7.8e-10	38.2	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
TetR_C_5	PF08360.6	gi|257052450|ref|YP_003130283.1|	-	0.024	14.5	0.0	0.037	13.9	0.0	1.3	1	0	0	1	1	1	0	QacR-like	protein,	C-terminal	region
UPF0122	PF04297.9	gi|257052450|ref|YP_003130283.1|	-	0.047	13.7	0.1	0.093	12.7	0.1	1.4	1	0	0	1	1	1	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
TetR_C_9	PF14514.1	gi|257052450|ref|YP_003130283.1|	-	0.077	12.8	0.1	0.8	9.5	0.0	2.4	2	1	0	2	2	2	0	Transcriptional	regulator,	TetR,	C-terminal
DnaG_DnaB_bind	PF08278.6	gi|257052450|ref|YP_003130283.1|	-	0.13	12.4	0.1	0.34	11.1	0.0	1.7	1	1	0	1	1	1	0	DNA	primase	DnaG	DnaB-binding
ABC_tran	PF00005.22	gi|257052451|ref|YP_003130284.1|	-	8.7e-38	129.7	0.0	1.5e-37	128.9	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
ABC_membrane	PF00664.18	gi|257052451|ref|YP_003130284.1|	-	4.5e-36	124.6	0.3	5.8e-36	124.3	0.2	1.1	1	0	0	1	1	1	1	ABC	transporter	transmembrane	region
AAA_21	PF13304.1	gi|257052451|ref|YP_003130284.1|	-	2.4e-05	24.4	0.0	0.014	15.3	0.0	2.3	1	1	1	2	2	2	2	AAA	domain
AAA_30	PF13604.1	gi|257052451|ref|YP_003130284.1|	-	0.00055	19.5	0.9	0.011	15.3	0.0	2.6	1	1	1	2	2	2	1	AAA	domain
AAA_17	PF13207.1	gi|257052451|ref|YP_003130284.1|	-	0.00064	20.5	0.2	0.0016	19.2	0.1	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|257052451|ref|YP_003130284.1|	-	0.0011	19.1	0.3	0.0081	16.2	0.2	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|257052451|ref|YP_003130284.1|	-	0.0022	18.0	0.1	0.0041	17.1	0.1	1.4	1	0	0	1	1	1	1	AAA	ATPase	domain
Zeta_toxin	PF06414.7	gi|257052451|ref|YP_003130284.1|	-	0.0024	16.9	0.0	0.0049	15.9	0.0	1.4	1	0	0	1	1	1	1	Zeta	toxin
SMC_N	PF02463.14	gi|257052451|ref|YP_003130284.1|	-	0.0024	17.1	0.0	0.036	13.2	0.0	1.9	1	1	1	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA	PF00004.24	gi|257052451|ref|YP_003130284.1|	-	0.004	17.3	0.0	0.027	14.6	0.0	2.2	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF258	PF03193.11	gi|257052451|ref|YP_003130284.1|	-	0.0045	16.2	0.0	0.0079	15.3	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_19	PF13245.1	gi|257052451|ref|YP_003130284.1|	-	0.011	15.4	0.0	0.044	13.5	0.0	2.1	1	0	0	1	1	1	0	Part	of	AAA	domain
AAA_18	PF13238.1	gi|257052451|ref|YP_003130284.1|	-	0.013	15.8	0.3	0.027	14.7	0.0	1.8	2	0	0	2	2	1	0	AAA	domain
UPF0079	PF02367.12	gi|257052451|ref|YP_003130284.1|	-	0.013	15.1	0.0	0.028	14.0	0.0	1.5	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_33	PF13671.1	gi|257052451|ref|YP_003130284.1|	-	0.031	14.1	0.0	0.36	10.7	0.0	2.5	3	0	0	3	3	3	0	AAA	domain
AAA_25	PF13481.1	gi|257052451|ref|YP_003130284.1|	-	0.033	13.5	0.5	0.19	11.0	0.1	2.3	2	1	0	2	2	2	0	AAA	domain
AAA_29	PF13555.1	gi|257052451|ref|YP_003130284.1|	-	0.038	13.5	0.0	0.11	12.0	0.0	1.7	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.1	gi|257052451|ref|YP_003130284.1|	-	0.045	14.0	0.0	0.11	12.8	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
cobW	PF02492.14	gi|257052451|ref|YP_003130284.1|	-	0.047	13.1	0.0	0.087	12.2	0.0	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_14	PF13173.1	gi|257052451|ref|YP_003130284.1|	-	0.057	13.3	0.0	0.19	11.6	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
MobB	PF03205.9	gi|257052451|ref|YP_003130284.1|	-	0.064	12.9	0.0	0.13	11.9	0.0	1.5	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_10	PF12846.2	gi|257052451|ref|YP_003130284.1|	-	0.12	11.7	0.0	0.39	10.1	0.0	1.7	2	0	0	2	2	2	0	AAA-like	domain
NTPase_1	PF03266.10	gi|257052451|ref|YP_003130284.1|	-	0.12	12.0	0.1	1.9	8.1	0.0	2.4	2	0	0	2	2	2	0	NTPase
AAA_5	PF07728.9	gi|257052451|ref|YP_003130284.1|	-	0.16	11.6	0.5	1.3	8.6	0.0	2.5	3	0	0	3	3	2	0	AAA	domain	(dynein-related	subfamily)
ABC_ATPase	PF09818.4	gi|257052451|ref|YP_003130284.1|	-	0.16	10.5	1.7	0.21	10.1	0.3	1.7	2	0	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
AAA_24	PF13479.1	gi|257052451|ref|YP_003130284.1|	-	0.18	11.3	0.1	0.44	10.0	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
ALMS_motif	PF15309.1	gi|257052453|ref|YP_003130286.1|	-	0.027	14.3	0.0	0.027	14.3	0.0	1.0	1	0	0	1	1	1	0	ALMS	motif
Exo_endo_phos	PF03372.18	gi|257052454|ref|YP_003130287.1|	-	5.2e-16	59.3	4.8	1e-15	58.3	3.3	1.5	1	1	0	1	1	1	1	Endonuclease/Exonuclease/phosphatase	family
Exo_endo_phos_2	PF14529.1	gi|257052454|ref|YP_003130287.1|	-	0.00017	21.1	0.0	0.00064	19.3	0.0	1.9	1	1	0	1	1	1	1	Endonuclease-reverse	transcriptase
AAA_10	PF12846.2	gi|257052455|ref|YP_003130288.1|	-	1.4e-18	67.4	0.0	2.6e-17	63.2	0.0	2.0	1	1	0	1	1	1	1	AAA-like	domain
DUF87	PF01935.12	gi|257052455|ref|YP_003130288.1|	-	8.9e-09	35.5	0.0	1.6e-08	34.6	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF87
DUF853	PF05872.7	gi|257052455|ref|YP_003130288.1|	-	4.8e-06	25.1	0.1	0.005	15.2	0.0	2.2	2	0	0	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF853)
FtsK_SpoIIIE	PF01580.13	gi|257052455|ref|YP_003130288.1|	-	6.5e-05	22.4	0.0	0.051	13.0	0.0	2.4	2	0	0	2	2	2	2	FtsK/SpoIIIE	family
AAA_19	PF13245.1	gi|257052455|ref|YP_003130288.1|	-	0.00059	19.5	0.0	0.0015	18.2	0.0	1.7	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_16	PF13191.1	gi|257052455|ref|YP_003130288.1|	-	0.00071	19.6	0.0	0.0033	17.4	0.0	2.1	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|257052455|ref|YP_003130288.1|	-	0.0061	16.7	0.0	0.023	14.8	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
T2SE	PF00437.15	gi|257052455|ref|YP_003130288.1|	-	0.0091	14.9	0.0	0.016	14.1	0.0	1.3	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
TrwB_AAD_bind	PF10412.4	gi|257052455|ref|YP_003130288.1|	-	0.013	14.1	0.0	0.021	13.4	0.0	1.2	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA	PF00004.24	gi|257052455|ref|YP_003130288.1|	-	0.027	14.6	0.1	4.1	7.5	0.0	2.4	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Zot	PF05707.7	gi|257052455|ref|YP_003130288.1|	-	0.038	13.4	0.0	2.2	7.7	0.0	2.2	2	0	0	2	2	2	0	Zonular	occludens	toxin	(Zot)
Zeta_toxin	PF06414.7	gi|257052455|ref|YP_003130288.1|	-	0.039	13.0	0.0	0.079	12.0	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
Ribosomal_L30_N	PF08079.7	gi|257052455|ref|YP_003130288.1|	-	0.076	13.0	0.3	0.17	11.9	0.2	1.5	1	0	0	1	1	1	0	Ribosomal	L30	N-terminal	domain
HAS-barrel	PF09378.5	gi|257052455|ref|YP_003130288.1|	-	0.08	12.8	0.0	0.4	10.6	0.0	2.1	2	0	0	2	2	2	0	HAS	barrel	domain
AAA_18	PF13238.1	gi|257052455|ref|YP_003130288.1|	-	0.11	12.7	0.0	3.2	8.0	0.0	2.5	2	0	0	2	2	2	0	AAA	domain
DEAD	PF00270.24	gi|257052455|ref|YP_003130288.1|	-	0.13	11.7	0.0	1	8.8	0.0	2.1	1	1	0	1	1	1	0	DEAD/DEAH	box	helicase
DUF937	PF06078.6	gi|257052456|ref|YP_003130289.1|	-	0.042	14.0	0.8	0.081	13.1	0.6	1.4	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF937)
TAT_signal	PF10518.4	gi|257052457|ref|YP_003130290.1|	-	0.0087	15.9	3.4	0.0087	15.9	2.4	1.9	2	0	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Mut7-C	PF01927.11	gi|257052458|ref|YP_003130291.1|	-	0.092	12.7	1.2	0.78	9.6	0.3	2.1	2	0	0	2	2	2	0	Mut7-C	RNAse	domain
Mu-like_Com	PF10122.4	gi|257052458|ref|YP_003130291.1|	-	0.6	9.2	3.9	1.4	8.0	0.2	2.5	2	0	0	2	2	2	0	Mu-like	prophage	protein	Com
zinc-ribbons_6	PF07191.7	gi|257052458|ref|YP_003130291.1|	-	1.3	8.8	8.5	0.33	10.7	3.7	1.6	2	0	0	2	2	2	0	zinc-ribbons
Usp	PF00582.21	gi|257052459|ref|YP_003130292.1|	-	1.4e-34	119.2	0.0	1.6e-34	119.1	0.0	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
PGM_PMM_I	PF02878.11	gi|257052460|ref|YP_003130293.1|	-	6.1e-31	106.7	0.2	1.6e-30	105.3	0.0	1.8	2	0	0	2	2	2	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
PGM_PMM_II	PF02879.11	gi|257052460|ref|YP_003130293.1|	-	5.1e-24	84.6	0.3	3.5e-23	81.8	0.1	2.5	4	0	0	4	4	4	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
PGM_PMM_IV	PF00408.15	gi|257052460|ref|YP_003130293.1|	-	1.4e-13	50.5	0.0	5.4e-13	48.7	0.0	2.0	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	C-terminal	domain
PGM_PMM_III	PF02880.11	gi|257052460|ref|YP_003130293.1|	-	0.0019	18.2	0.0	0.0042	17.1	0.0	1.6	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	III
PNP_UDP_1	PF01048.15	gi|257052461|ref|YP_003130294.1|	-	4e-45	153.5	0.9	5.1e-45	153.2	0.6	1.1	1	0	0	1	1	1	1	Phosphorylase	superfamily
dCMP_cyt_deam_1	PF00383.17	gi|257052462|ref|YP_003130295.1|	-	1.4e-15	56.7	0.0	1.6e-15	56.6	0.0	1.1	1	0	0	1	1	1	1	Cytidine	and	deoxycytidylate	deaminase	zinc-binding	region
dCMP_cyt_deam_2	PF08211.6	gi|257052462|ref|YP_003130295.1|	-	1.7e-12	47.4	0.1	2.3e-12	47.0	0.1	1.2	1	0	0	1	1	1	1	Cytidine	and	deoxycytidylate	deaminase	zinc-binding	region
LmjF365940-deam	PF14421.1	gi|257052462|ref|YP_003130295.1|	-	0.0021	17.4	0.4	0.5	9.7	0.0	2.0	1	1	1	2	2	2	2	A	distinct	subfamily	of	CDD/CDA-like	deaminases
XOO_2897-deam	PF14440.1	gi|257052462|ref|YP_003130295.1|	-	0.0026	17.4	0.0	0.0034	17.0	0.0	1.2	1	0	0	1	1	1	1	Xanthomonas	XOO_2897-like	deaminase
YwqJ-deaminase	PF14431.1	gi|257052462|ref|YP_003130295.1|	-	0.012	15.4	0.4	1.1	9.1	0.3	2.2	1	1	1	2	2	2	0	YwqJ-like	deaminase
DUF1427	PF07235.6	gi|257052463|ref|YP_003130296.1|	-	1e-05	25.4	4.2	1.2e-05	25.3	2.9	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1427)
SpoVAB	PF13782.1	gi|257052463|ref|YP_003130296.1|	-	0.019	14.9	1.6	0.021	14.8	1.1	1.1	1	0	0	1	1	1	0	Stage	V	sporulation	protein	AB
TauE	PF01925.14	gi|257052463|ref|YP_003130296.1|	-	0.034	13.5	3.5	0.035	13.5	2.4	1.0	1	0	0	1	1	1	0	Sulfite	exporter	TauE/SafE
DUF2759	PF10958.3	gi|257052463|ref|YP_003130296.1|	-	0.73	9.4	3.9	1.2	8.7	0.8	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2759)
DUF2273	PF10031.4	gi|257052463|ref|YP_003130296.1|	-	2.8	7.6	6.5	4.6	6.9	0.4	2.3	2	0	0	2	2	2	0	Small	integral	membrane	protein	(DUF2273)
DeoC	PF01791.4	gi|257052464|ref|YP_003130297.1|	-	1.1e-39	136.1	1.0	1.2e-39	136.0	0.7	1.0	1	0	0	1	1	1	1	DeoC/LacD	family	aldolase
KaiC	PF06745.8	gi|257052465|ref|YP_003130298.1|	-	1.9e-56	190.7	0.0	2.3e-56	190.4	0.0	1.1	1	0	0	1	1	1	1	KaiC
AAA_25	PF13481.1	gi|257052465|ref|YP_003130298.1|	-	8.1e-10	38.4	0.0	1.5e-09	37.5	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
DnaB_C	PF03796.10	gi|257052465|ref|YP_003130298.1|	-	1.1e-06	27.6	0.0	7.4e-05	21.7	0.0	2.2	2	0	0	2	2	2	1	DnaB-like	helicase	C	terminal	domain
GvpD	PF07088.6	gi|257052465|ref|YP_003130298.1|	-	5.1e-06	25.0	0.1	1.1e-05	23.9	0.1	1.5	1	1	0	1	1	1	1	GvpD	gas	vesicle	protein
AAA_24	PF13479.1	gi|257052465|ref|YP_003130298.1|	-	0.00022	20.8	0.0	0.00041	20.0	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
RecA	PF00154.16	gi|257052465|ref|YP_003130298.1|	-	0.0012	17.9	0.0	0.0019	17.3	0.0	1.3	1	0	0	1	1	1	1	recA	bacterial	DNA	recombination	protein
IstB_IS21	PF01695.12	gi|257052465|ref|YP_003130298.1|	-	0.0013	18.2	0.0	0.0026	17.1	0.0	1.4	1	1	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_19	PF13245.1	gi|257052465|ref|YP_003130298.1|	-	0.003	17.2	0.0	0.0066	16.1	0.0	1.5	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_14	PF13173.1	gi|257052465|ref|YP_003130298.1|	-	0.0036	17.1	0.0	0.0088	15.9	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
T2SE	PF00437.15	gi|257052465|ref|YP_003130298.1|	-	0.0038	16.1	0.0	0.0056	15.6	0.0	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_10	PF12846.2	gi|257052465|ref|YP_003130298.1|	-	0.0052	16.2	0.0	0.008	15.6	0.0	1.3	1	0	0	1	1	1	1	AAA-like	domain
DUF2075	PF09848.4	gi|257052465|ref|YP_003130298.1|	-	0.0071	15.3	0.0	0.01	14.8	0.0	1.2	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2075)
AAA_22	PF13401.1	gi|257052465|ref|YP_003130298.1|	-	0.0091	16.1	0.0	0.018	15.2	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_18	PF13238.1	gi|257052465|ref|YP_003130298.1|	-	0.0097	16.2	0.0	0.02	15.2	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|257052465|ref|YP_003130298.1|	-	0.021	14.8	0.1	0.11	12.4	0.1	2.2	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_33	PF13671.1	gi|257052465|ref|YP_003130298.1|	-	0.043	13.6	0.2	0.083	12.7	0.1	1.6	1	1	0	1	1	1	0	AAA	domain
DUF3275	PF11679.3	gi|257052465|ref|YP_003130298.1|	-	0.65	9.5	4.6	1.1	8.8	3.2	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3275)
Mucin	PF01456.12	gi|257052465|ref|YP_003130298.1|	-	1.8	8.3	8.1	3.2	7.5	5.6	1.3	1	0	0	1	1	1	0	Mucin-like	glycoprotein
NAD_kinase	PF01513.16	gi|257052466|ref|YP_003130299.1|	-	1.6e-37	128.8	0.2	2.1e-37	128.4	0.2	1.1	1	0	0	1	1	1	1	ATP-NAD	kinase
DAGK_cat	PF00781.19	gi|257052466|ref|YP_003130299.1|	-	0.013	14.9	0.1	0.024	14.0	0.1	1.5	1	0	0	1	1	1	0	Diacylglycerol	kinase	catalytic	domain
Esterase_phd	PF10503.4	gi|257052466|ref|YP_003130299.1|	-	0.1	11.7	0.1	0.18	10.9	0.1	1.3	1	0	0	1	1	1	0	Esterase	PHB	depolymerase
ABC2_membrane_4	PF12730.2	gi|257052467|ref|YP_003130300.1|	-	0.13	11.4	2.4	0.15	11.1	1.7	1.2	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
Prim_Zn_Ribbon	PF08273.7	gi|257052469|ref|YP_003130302.1|	-	0.04	13.9	1.7	0.069	13.2	1.2	1.3	1	0	0	1	1	1	0	Zinc-binding	domain	of	primase-helicase
Auto_anti-p27	PF06677.7	gi|257052469|ref|YP_003130302.1|	-	0.095	12.4	0.1	0.14	11.8	0.1	1.3	1	0	0	1	1	1	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
DUF1510	PF07423.6	gi|257052469|ref|YP_003130302.1|	-	0.67	9.2	5.3	0.79	9.0	3.7	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1510)
GET2	PF08690.5	gi|257052469|ref|YP_003130302.1|	-	1.3	8.1	3.1	1.5	7.9	2.1	1.0	1	0	0	1	1	1	0	GET	complex	subunit	GET2
Oxidored_q5_N	PF01059.12	gi|257052470|ref|YP_003130303.1|	-	0.15	11.9	0.1	0.18	11.7	0.1	1.1	1	0	0	1	1	1	0	NADH-ubiquinone	oxidoreductase	chain	4,	amino	terminus
Bac_luciferase	PF00296.15	gi|257052471|ref|YP_003130304.1|	-	2.9e-62	210.5	9.6	3.8e-62	210.1	6.7	1.1	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
F420_ligase	PF01996.11	gi|257052472|ref|YP_003130305.1|	-	2.9e-65	219.5	0.1	3.4e-65	219.3	0.1	1.0	1	0	0	1	1	1	1	F420-0:Gamma-glutamyl	ligase
PKD	PF00801.15	gi|257052472|ref|YP_003130305.1|	-	0.15	11.8	0.5	0.4	10.4	0.1	1.9	2	0	0	2	2	2	0	PKD	domain
Metallophos_2	PF12850.2	gi|257052473|ref|YP_003130306.1|	-	1.9e-24	86.3	0.1	2.1e-24	86.1	0.1	1.0	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.23	gi|257052473|ref|YP_003130306.1|	-	0.13	11.6	0.3	5.4	6.3	0.0	2.2	2	0	0	2	2	2	0	Calcineurin-like	phosphoesterase
IF-2B	PF01008.12	gi|257052474|ref|YP_003130307.1|	-	5.1e-40	137.2	0.0	6.3e-40	136.9	0.0	1.1	1	0	0	1	1	1	1	Initiation	factor	2	subunit	family
NUDIX	PF00293.23	gi|257052474|ref|YP_003130307.1|	-	1.7e-07	30.9	0.5	3.6e-07	29.9	0.3	1.5	1	0	0	1	1	1	1	NUDIX	domain
Phage_integrase	PF00589.17	gi|257052475|ref|YP_003130308.1|	-	2.1e-23	82.8	0.0	3.5e-23	82.1	0.0	1.4	1	0	0	1	1	1	1	Phage	integrase	family
DUF3435	PF11917.3	gi|257052475|ref|YP_003130308.1|	-	0.00049	18.9	0.2	0.0023	16.7	0.0	1.9	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF3435)
UPF0547	PF10571.4	gi|257052475|ref|YP_003130308.1|	-	0.00075	19.1	1.3	0.0012	18.4	0.9	1.3	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0547
DZR	PF12773.2	gi|257052475|ref|YP_003130308.1|	-	0.0025	17.5	0.9	0.005	16.6	0.6	1.4	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-ribbon_3	PF13248.1	gi|257052475|ref|YP_003130308.1|	-	0.003	16.7	2.8	0.0056	15.8	2.0	1.5	1	0	0	1	1	1	1	zinc-ribbon	domain
Phage_int_SAM_1	PF02899.12	gi|257052475|ref|YP_003130308.1|	-	0.0051	16.9	0.4	0.65	10.2	0.1	2.9	1	1	2	3	3	3	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_4	PF13495.1	gi|257052475|ref|YP_003130308.1|	-	0.014	15.6	0.0	0.04	14.2	0.0	1.7	1	0	0	1	1	1	0	Phage	integrase,	N-terminal	SAM-like	domain
zinc_ribbon_2	PF13240.1	gi|257052475|ref|YP_003130308.1|	-	0.017	14.6	1.5	0.034	13.6	1.1	1.5	1	0	0	1	1	1	0	zinc-ribbon	domain
FYDLN_acid	PF09538.5	gi|257052475|ref|YP_003130308.1|	-	0.023	15.2	2.9	0.023	15.2	2.0	3.4	3	1	1	4	4	4	0	Protein	of	unknown	function	(FYDLN_acid)
Prok-RING_1	PF14446.1	gi|257052475|ref|YP_003130308.1|	-	0.032	13.9	0.9	0.066	12.9	0.7	1.4	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
SHOCT	PF09851.4	gi|257052475|ref|YP_003130308.1|	-	2.7	7.6	5.2	1.6	8.3	0.8	2.9	2	1	0	2	2	2	0	Short	C-terminal	domain
Glyco_hydro_43	PF04616.9	gi|257052476|ref|YP_003130309.1|	-	6.3e-89	297.8	0.1	7.9e-89	297.5	0.1	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	43
Rhodanese	PF00581.15	gi|257052477|ref|YP_003130310.1|	-	1.1e-15	57.9	0.0	1.3e-15	57.7	0.0	1.1	1	0	0	1	1	1	1	Rhodanese-like	domain
NUDIX	PF00293.23	gi|257052478|ref|YP_003130311.1|	-	7e-16	58.0	0.3	9.6e-16	57.6	0.2	1.2	1	0	0	1	1	1	1	NUDIX	domain
Acetyltransf_1	PF00583.19	gi|257052482|ref|YP_003130315.1|	-	1.1e-14	54.2	0.0	1.6e-14	53.7	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.1	gi|257052482|ref|YP_003130315.1|	-	5.1e-10	39.4	0.0	6.7e-10	39.1	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.1	gi|257052482|ref|YP_003130315.1|	-	1.6e-06	28.1	0.0	2.4e-06	27.6	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.1	gi|257052482|ref|YP_003130315.1|	-	1.7e-06	27.8	0.0	2.4e-06	27.3	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|257052482|ref|YP_003130315.1|	-	2.1e-05	24.1	0.0	3.1e-05	23.6	0.0	1.2	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_8	PF13523.1	gi|257052482|ref|YP_003130315.1|	-	0.01	15.7	0.0	0.012	15.4	0.0	1.3	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.1	gi|257052482|ref|YP_003130315.1|	-	0.089	12.9	0.0	0.15	12.2	0.0	1.4	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
UPF0118	PF01594.11	gi|257052483|ref|YP_003130316.1|	-	0.019	13.9	3.4	0.023	13.7	2.4	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF20
DUF3042	PF11240.3	gi|257052483|ref|YP_003130316.1|	-	0.68	9.7	3.0	3.5	7.4	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3042)
PrsW-protease	PF13367.1	gi|257052484|ref|YP_003130317.1|	-	1.1e-37	129.0	20.9	1.1e-37	129.0	14.5	1.6	2	0	0	2	2	2	1	Protease	prsW	family
YbgT_YccB	PF08173.6	gi|257052484|ref|YP_003130317.1|	-	0.29	10.9	4.7	0.68	9.8	2.3	2.5	1	1	0	1	1	1	0	Membrane	bound	YbgT-like	protein
DUF2370	PF10176.4	gi|257052484|ref|YP_003130317.1|	-	0.34	10.2	1.9	4.3	6.6	0.1	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2370)
SNO	PF01174.14	gi|257052485|ref|YP_003130318.1|	-	5.4e-52	176.1	0.0	5.9e-52	176.0	0.0	1.0	1	0	0	1	1	1	1	SNO	glutamine	amidotransferase	family
GATase_3	PF07685.9	gi|257052485|ref|YP_003130318.1|	-	6.4e-09	35.5	0.0	1.1e-08	34.8	0.0	1.6	1	1	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
Peptidase_S51	PF03575.12	gi|257052485|ref|YP_003130318.1|	-	1.5e-05	24.7	0.0	2e-05	24.3	0.0	1.2	1	0	0	1	1	1	1	Peptidase	family	S51
GATase	PF00117.23	gi|257052485|ref|YP_003130318.1|	-	3.9e-05	23.1	0.0	6.7e-05	22.4	0.0	1.3	1	1	0	1	1	1	1	Glutamine	amidotransferase	class-I
DUF4066	PF13278.1	gi|257052485|ref|YP_003130318.1|	-	0.0039	16.4	0.3	0.0057	15.9	0.2	1.2	1	0	0	1	1	1	1	Putative	amidotransferase
DJ-1_PfpI	PF01965.19	gi|257052485|ref|YP_003130318.1|	-	0.004	16.6	0.1	0.0057	16.1	0.1	1.3	1	0	0	1	1	1	1	DJ-1/PfpI	family
BPL_N	PF09825.4	gi|257052485|ref|YP_003130318.1|	-	0.041	12.6	0.0	0.068	11.9	0.0	1.4	2	0	0	2	2	2	0	Biotin-protein	ligase,	N	terminal
Bac_Ubq_Cox	PF01654.12	gi|257052486|ref|YP_003130319.1|	-	3.9e-134	447.3	19.5	4.5e-134	447.1	13.5	1.0	1	0	0	1	1	1	1	Bacterial	Cytochrome	Ubiquinol	Oxidase
DUF2627	PF11118.3	gi|257052486|ref|YP_003130319.1|	-	0.0039	17.2	0.2	0.0039	17.2	0.1	2.8	3	0	0	3	3	3	1	Protein	of	unknown	function	(DUF2627)
DUF1516	PF07457.6	gi|257052486|ref|YP_003130319.1|	-	0.66	10.0	6.1	0.78	9.8	1.4	2.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1516)
Cyto_ox_2	PF02322.10	gi|257052487|ref|YP_003130320.1|	-	3.6e-65	220.3	31.5	8.5e-65	219.0	21.9	1.5	1	1	0	1	1	1	1	Cytochrome	oxidase	subunit	II
Sugarporin_N	PF11471.3	gi|257052487|ref|YP_003130320.1|	-	0.037	13.6	0.9	0.092	12.4	0.6	1.7	1	0	0	1	1	1	0	Maltoporin	periplasmic	N-terminal	extension
TrkH	PF02386.11	gi|257052488|ref|YP_003130321.1|	-	1.5e-45	155.3	15.7	2.3e-45	154.7	7.8	2.1	2	0	0	2	2	2	2	Cation	transport	protein
PRA-PH	PF01503.12	gi|257052489|ref|YP_003130322.1|	-	4.8e-15	55.5	2.4	5.4e-15	55.4	1.7	1.1	1	0	0	1	1	1	1	Phosphoribosyl-ATP	pyrophosphohydrolase
MazG	PF03819.12	gi|257052489|ref|YP_003130322.1|	-	0.00048	20.0	3.0	0.00078	19.3	2.1	1.3	1	0	0	1	1	1	1	MazG	nucleotide	pyrophosphohydrolase	domain
DUF4286	PF14114.1	gi|257052491|ref|YP_003130324.1|	-	0.098	12.9	0.6	0.24	11.6	0.2	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4286)
Helicase_C_2	PF13307.1	gi|257052492|ref|YP_003130325.1|	-	9.3e-30	103.7	0.0	2.5e-29	102.3	0.0	1.7	2	0	0	2	2	2	1	Helicase	C-terminal	domain
DEAD_2	PF06733.10	gi|257052492|ref|YP_003130325.1|	-	2.6e-20	72.5	0.1	1e-19	70.6	0.1	1.8	1	1	0	1	1	1	1	DEAD_2
DEAD	PF00270.24	gi|257052492|ref|YP_003130325.1|	-	2e-11	43.6	0.6	6.6e-09	35.4	0.2	3.2	3	1	0	3	3	3	1	DEAD/DEAH	box	helicase
ResIII	PF04851.10	gi|257052492|ref|YP_003130325.1|	-	5.6e-07	29.5	1.0	6.1e-06	26.1	0.7	2.2	1	1	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
KaiC	PF06745.8	gi|257052492|ref|YP_003130325.1|	-	0.00041	19.5	0.2	0.0011	18.0	0.0	1.7	1	1	1	2	2	2	1	KaiC
AAA_16	PF13191.1	gi|257052492|ref|YP_003130325.1|	-	0.0046	16.9	2.4	0.019	14.9	1.7	2.1	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_19	PF13245.1	gi|257052492|ref|YP_003130325.1|	-	0.0055	16.4	0.2	0.015	15.0	0.2	1.7	1	0	0	1	1	1	1	Part	of	AAA	domain
Zot	PF05707.7	gi|257052492|ref|YP_003130325.1|	-	0.0075	15.7	0.0	0.87	9.0	0.0	2.4	2	0	0	2	2	2	1	Zonular	occludens	toxin	(Zot)
AAA_34	PF13872.1	gi|257052492|ref|YP_003130325.1|	-	0.012	14.4	0.0	0.022	13.5	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	NTP	hydrolase	pore-1
DUF2075	PF09848.4	gi|257052492|ref|YP_003130325.1|	-	0.012	14.5	1.1	0.15	10.9	0.1	2.5	2	1	1	3	3	3	0	Uncharacterized	conserved	protein	(DUF2075)
PhoH	PF02562.11	gi|257052492|ref|YP_003130325.1|	-	0.013	14.7	0.0	0.037	13.2	0.0	1.7	2	0	0	2	2	2	0	PhoH-like	protein
Alk_phosphatase	PF00245.15	gi|257052492|ref|YP_003130325.1|	-	0.051	12.2	1.3	0.086	11.5	0.1	1.9	2	0	0	2	2	2	0	Alkaline	phosphatase
AAA_22	PF13401.1	gi|257052492|ref|YP_003130325.1|	-	0.056	13.5	1.6	0.61	10.2	0.5	2.5	1	1	0	2	2	2	0	AAA	domain
Sigma54_activat	PF00158.21	gi|257052492|ref|YP_003130325.1|	-	0.057	12.8	0.0	0.11	11.9	0.0	1.4	1	0	0	1	1	1	0	Sigma-54	interaction	domain
AAA	PF00004.24	gi|257052492|ref|YP_003130325.1|	-	0.34	11.1	1.8	3.8	7.7	1.1	2.6	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
APG6	PF04111.7	gi|257052492|ref|YP_003130325.1|	-	2.1	7.3	4.3	3.4	6.6	3.0	1.2	1	0	0	1	1	1	0	Autophagy	protein	Apg6
HSP20	PF00011.16	gi|257052493|ref|YP_003130326.1|	-	2e-16	59.6	0.0	2.9e-16	59.1	0.0	1.2	1	0	0	1	1	1	1	Hsp20/alpha	crystallin	family
CoatB	PF10389.4	gi|257052493|ref|YP_003130326.1|	-	0.079	12.8	0.4	0.14	12.0	0.3	1.4	1	0	0	1	1	1	0	Bacteriophage	coat	protein	B
Aldo_ket_red	PF00248.16	gi|257052494|ref|YP_003130327.1|	-	2.4e-74	249.7	0.0	2.6e-74	249.5	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
Lipase_GDSL_2	PF13472.1	gi|257052494|ref|YP_003130327.1|	-	0.013	15.6	0.1	0.58	10.2	0.0	2.5	2	1	0	2	2	2	0	GDSL-like	Lipase/Acylhydrolase	family
RHH_1	PF01402.16	gi|257052494|ref|YP_003130327.1|	-	0.12	12.2	0.3	0.73	9.8	0.0	2.4	2	0	0	2	2	2	0	Ribbon-helix-helix	protein,	copG	family
ABC_tran	PF00005.22	gi|257052496|ref|YP_003130329.1|	-	6.7e-27	94.4	0.0	9e-27	94.0	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|257052496|ref|YP_003130329.1|	-	3.3e-12	46.9	0.0	1.3e-10	41.6	0.0	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|257052496|ref|YP_003130329.1|	-	0.00063	19.2	0.2	0.0011	18.4	0.2	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.1	gi|257052496|ref|YP_003130329.1|	-	0.00083	19.7	0.0	0.001	19.4	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_25	PF13481.1	gi|257052496|ref|YP_003130329.1|	-	0.003	17.0	0.2	0.0068	15.8	0.0	1.8	2	1	0	2	2	2	1	AAA	domain
AAA_18	PF13238.1	gi|257052496|ref|YP_003130329.1|	-	0.0042	17.3	0.1	0.54	10.5	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
SRP54	PF00448.17	gi|257052496|ref|YP_003130329.1|	-	0.0069	15.8	0.3	0.011	15.2	0.2	1.3	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
AAA_17	PF13207.1	gi|257052496|ref|YP_003130329.1|	-	0.0069	17.2	0.2	0.016	16.0	0.2	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_30	PF13604.1	gi|257052496|ref|YP_003130329.1|	-	0.0093	15.5	0.1	0.022	14.3	0.0	1.6	2	0	0	2	2	2	1	AAA	domain
SMC_N	PF02463.14	gi|257052496|ref|YP_003130329.1|	-	0.011	15.0	0.1	2.3	7.4	0.0	2.1	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
SbcCD_C	PF13558.1	gi|257052496|ref|YP_003130329.1|	-	0.032	14.1	0.1	0.099	12.5	0.0	1.8	1	1	1	2	2	2	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_16	PF13191.1	gi|257052496|ref|YP_003130329.1|	-	0.071	13.0	0.0	0.16	11.9	0.0	1.7	2	1	0	2	2	2	0	AAA	ATPase	domain
AAA_24	PF13479.1	gi|257052496|ref|YP_003130329.1|	-	0.072	12.6	0.0	0.14	11.7	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_5	PF07728.9	gi|257052496|ref|YP_003130329.1|	-	0.082	12.6	0.0	0.24	11.1	0.0	1.7	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_22	PF13401.1	gi|257052496|ref|YP_003130329.1|	-	0.095	12.8	0.3	0.18	11.9	0.2	1.7	1	1	0	1	1	1	0	AAA	domain
DUF853	PF05872.7	gi|257052496|ref|YP_003130329.1|	-	0.095	11.0	0.1	0.13	10.5	0.1	1.1	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF853)
Zeta_toxin	PF06414.7	gi|257052496|ref|YP_003130329.1|	-	0.12	11.4	0.0	0.19	10.7	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
UPF0079	PF02367.12	gi|257052496|ref|YP_003130329.1|	-	0.13	11.9	0.2	0.24	11.0	0.1	1.4	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_33	PF13671.1	gi|257052496|ref|YP_003130329.1|	-	0.13	12.0	0.2	0.18	11.6	0.1	1.5	1	1	0	1	1	1	0	AAA	domain
ABC2_membrane_3	PF12698.2	gi|257052497|ref|YP_003130330.1|	-	1.1e-37	129.8	15.4	1.2e-37	129.7	10.7	1.0	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.2	gi|257052497|ref|YP_003130330.1|	-	5.9e-19	67.9	11.1	7.7e-19	67.6	7.7	1.1	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.2	gi|257052497|ref|YP_003130330.1|	-	1.4e-10	40.7	14.9	3.9e-10	39.2	10.3	1.8	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_5	PF13346.1	gi|257052497|ref|YP_003130330.1|	-	3.1e-06	26.6	15.9	3.1e-06	26.6	11.1	2.4	2	1	0	2	2	2	1	ABC-2	family	transporter	protein
DUF1684	PF07920.6	gi|257052498|ref|YP_003130331.1|	-	1.9e-52	176.9	0.0	2.3e-52	176.6	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1684)
DUF2784	PF10861.3	gi|257052498|ref|YP_003130331.1|	-	0.062	13.0	0.0	0.09	12.5	0.0	1.2	1	0	0	1	1	1	0	Protein	of	Unknown	function	(DUF2784)
Glu_synthase	PF01645.12	gi|257052500|ref|YP_003130333.1|	-	1.3e-11	44.0	0.0	6.1e-09	35.2	0.0	2.1	2	0	0	2	2	2	2	Conserved	region	in	glutamate	synthase
BCA_ABC_TP_C	PF12399.3	gi|257052500|ref|YP_003130333.1|	-	0.16	11.7	3.6	0.58	9.9	0.1	2.9	2	0	0	2	2	2	0	Branched-chain	amino	acid	ATP-binding	cassette	transporter
Pyr_redox_2	PF07992.9	gi|257052501|ref|YP_003130334.1|	-	2.6e-30	105.8	8.4	6.6e-29	101.2	5.8	3.8	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|257052501|ref|YP_003130334.1|	-	2.3e-24	85.5	1.1	7e-19	68.0	0.1	3.4	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|257052501|ref|YP_003130334.1|	-	5.1e-15	55.2	6.9	3e-06	26.3	0.9	4.1	3	1	1	4	4	4	4	FAD	dependent	oxidoreductase
Pyr_redox_dim	PF02852.17	gi|257052501|ref|YP_003130334.1|	-	5.1e-14	52.2	0.0	1.1e-13	51.1	0.0	1.6	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox_3	PF13738.1	gi|257052501|ref|YP_003130334.1|	-	1.1e-08	35.4	0.0	0.0088	16.1	0.0	3.2	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.1	gi|257052501|ref|YP_003130334.1|	-	1.2e-07	31.5	0.2	0.023	14.7	0.0	2.6	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
HI0933_like	PF03486.9	gi|257052501|ref|YP_003130334.1|	-	8.6e-07	27.7	0.3	0.062	11.7	0.0	3.8	3	1	1	4	4	4	2	HI0933-like	protein
TrkA_N	PF02254.13	gi|257052501|ref|YP_003130334.1|	-	0.0022	17.9	0.6	2.4	8.1	0.5	3.6	2	1	0	2	2	2	1	TrkA-N	domain
FAD_oxidored	PF12831.2	gi|257052501|ref|YP_003130334.1|	-	0.0025	16.9	0.0	0.056	12.5	0.0	2.4	3	0	0	3	3	3	1	FAD	dependent	oxidoreductase
3HCDH_N	PF02737.13	gi|257052501|ref|YP_003130334.1|	-	0.0051	16.4	0.2	0.0086	15.7	0.1	1.3	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Lycopene_cycl	PF05834.7	gi|257052501|ref|YP_003130334.1|	-	0.037	12.9	0.7	1.8	7.4	0.0	3.0	2	1	1	3	3	3	0	Lycopene	cyclase	protein
polyprenyl_synt	PF00348.12	gi|257052502|ref|YP_003130335.1|	-	1.2e-52	178.3	0.1	1.4e-52	178.0	0.1	1.0	1	0	0	1	1	1	1	Polyprenyl	synthetase
HTH_IclR	PF09339.5	gi|257052503|ref|YP_003130336.1|	-	0.0051	16.3	0.0	0.015	14.8	0.0	1.8	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.2	gi|257052503|ref|YP_003130336.1|	-	0.089	12.4	0.0	0.19	11.4	0.0	1.5	1	0	0	1	1	1	0	MarR	family
HTH_24	PF13412.1	gi|257052503|ref|YP_003130336.1|	-	0.11	11.9	0.0	0.18	11.1	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Pap_E4	PF02711.9	gi|257052504|ref|YP_003130337.1|	-	0.37	11.6	3.5	0.64	10.8	1.1	2.5	2	1	0	3	3	3	0	E4	protein
Dynein_heavy	PF03028.10	gi|257052504|ref|YP_003130337.1|	-	0.37	8.7	1.4	0.5	8.3	1.0	1.1	1	0	0	1	1	1	0	Dynein	heavy	chain	and	region	D6	of	dynein	motor
DUF1628	PF07790.6	gi|257052505|ref|YP_003130338.1|	-	2.3e-17	63.5	4.4	2.9e-17	63.1	2.2	1.7	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1628)
Big_3	PF07523.7	gi|257052505|ref|YP_003130338.1|	-	0.0033	17.4	0.4	0.045	13.8	0.1	2.3	2	0	0	2	2	2	1	Bacterial	Ig-like	domain	(group	3)
Tad_C	PF09977.4	gi|257052505|ref|YP_003130338.1|	-	1.2	10.1	6.4	43	5.2	4.4	2.1	1	1	0	1	1	1	0	Putative	Tad-like	Flp	pilus-assembly
Methyltransf_11	PF08241.7	gi|257052506|ref|YP_003130339.1|	-	2.6e-26	91.9	0.0	4.8e-26	91.0	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|257052506|ref|YP_003130339.1|	-	7.7e-19	67.9	0.0	9.5e-19	67.6	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|257052506|ref|YP_003130339.1|	-	1.2e-18	67.1	0.0	1.5e-18	66.8	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|257052506|ref|YP_003130339.1|	-	9e-17	60.9	0.0	3.5e-13	49.1	0.0	2.0	1	1	1	2	2	2	2	ubiE/COQ5	methyltransferase	family
Methyltransf_25	PF13649.1	gi|257052506|ref|YP_003130339.1|	-	1.3e-15	57.5	0.0	2.2e-15	56.8	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|257052506|ref|YP_003130339.1|	-	4.6e-15	55.9	0.0	7.2e-15	55.2	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|257052506|ref|YP_003130339.1|	-	2e-12	47.6	0.0	3.2e-12	47.0	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|257052506|ref|YP_003130339.1|	-	8.3e-11	41.9	0.1	3.6e-10	39.8	0.0	1.9	1	1	0	1	1	1	1	Methyltransferase	domain
MetW	PF07021.7	gi|257052506|ref|YP_003130339.1|	-	1.9e-06	27.3	0.0	2.8e-06	26.8	0.0	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
RrnaAD	PF00398.15	gi|257052506|ref|YP_003130339.1|	-	9.8e-06	24.7	0.0	1.1e-05	24.5	0.0	1.3	1	1	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
PCMT	PF01135.14	gi|257052506|ref|YP_003130339.1|	-	2.2e-05	24.1	0.0	2.8e-05	23.7	0.0	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_9	PF08003.6	gi|257052506|ref|YP_003130339.1|	-	0.00017	20.4	0.0	0.00023	19.9	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
Methyltransf_29	PF03141.11	gi|257052506|ref|YP_003130339.1|	-	0.0016	16.9	0.0	0.002	16.5	0.0	1.1	1	0	0	1	1	1	1	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
MTS	PF05175.9	gi|257052506|ref|YP_003130339.1|	-	0.0033	16.8	0.0	0.0054	16.1	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_8	PF05148.10	gi|257052506|ref|YP_003130339.1|	-	0.013	15.1	0.0	0.026	14.1	0.0	1.5	1	1	0	1	1	1	0	Hypothetical	methyltransferase
CMAS	PF02353.15	gi|257052506|ref|YP_003130339.1|	-	0.055	12.5	0.0	0.064	12.3	0.0	1.2	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
ATP-synt_B	PF00430.13	gi|257052507|ref|YP_003130340.1|	-	2.8e-08	33.6	22.6	3.7e-08	33.2	15.4	1.4	1	1	0	1	1	1	1	ATP	synthase	B/B'	CF(0)
HrpE	PF06188.7	gi|257052507|ref|YP_003130340.1|	-	8.4e-06	25.6	9.2	8.4e-06	25.6	6.4	2.0	1	1	1	2	2	2	1	HrpE/YscL/FliH	and	V-type	ATPase	subunit	E
V-ATPase_G	PF03179.10	gi|257052507|ref|YP_003130340.1|	-	1.5e-05	25.1	17.9	2.1e-05	24.7	12.4	1.2	1	0	0	1	1	1	1	Vacuolar	(H+)-ATPase	G	subunit
DUF3552	PF12072.3	gi|257052507|ref|YP_003130340.1|	-	0.0043	16.2	24.9	0.03	13.5	12.8	2.0	1	1	1	2	2	2	2	Domain	of	unknown	function	(DUF3552)
DivIVA	PF05103.8	gi|257052507|ref|YP_003130340.1|	-	0.033	14.2	16.2	0.25	11.3	8.1	2.1	1	1	1	2	2	2	0	DivIVA	protein
DUF4085	PF13315.1	gi|257052507|ref|YP_003130340.1|	-	0.067	12.5	5.1	0.46	9.8	0.7	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4085)
Phasin	PF05597.6	gi|257052507|ref|YP_003130340.1|	-	0.16	11.7	11.6	0.052	13.3	2.0	2.1	1	1	1	2	2	2	0	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
DUF883	PF05957.8	gi|257052507|ref|YP_003130340.1|	-	0.28	11.6	20.0	1.7	9.0	5.8	2.1	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF883)
DUF725	PF05267.7	gi|257052507|ref|YP_003130340.1|	-	0.57	10.0	3.0	13	5.7	0.1	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF725)
Caudo_TAP	PF02413.12	gi|257052507|ref|YP_003130340.1|	-	1.1	9.4	13.1	1.2	9.3	5.5	2.1	1	1	1	2	2	2	0	Caudovirales	tail	fibre	assembly	protein
KfrA_N	PF11740.3	gi|257052507|ref|YP_003130340.1|	-	1.6	9.1	34.4	0.32	11.4	11.4	2.5	1	1	2	3	3	3	0	Plasmid	replication	region	DNA-binding	N-term
Apolipoprotein	PF01442.13	gi|257052507|ref|YP_003130340.1|	-	2.2	7.7	17.4	9.7	5.6	12.1	1.8	1	1	0	1	1	1	0	Apolipoprotein	A1/A4/E	domain
Activator-TraM	PF11657.3	gi|257052507|ref|YP_003130340.1|	-	3.1	7.2	8.7	4.3	6.7	6.0	1.2	1	0	0	1	1	1	0	Transcriptional	activator	TraM
GBP_C	PF02841.9	gi|257052507|ref|YP_003130340.1|	-	4.6	6.3	13.7	5.5	6.0	9.5	1.1	1	0	0	1	1	1	0	Guanylate-binding	protein,	C-terminal	domain
LIN37	PF15306.1	gi|257052507|ref|YP_003130340.1|	-	5	7.1	7.4	2.8	7.9	4.1	1.5	1	1	0	1	1	1	0	LIN37
DUF3135	PF11333.3	gi|257052507|ref|YP_003130340.1|	-	5.2	7.2	7.6	4.6	7.4	2.0	2.3	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3135)
OmpH	PF03938.9	gi|257052507|ref|YP_003130340.1|	-	5.5	6.8	15.2	7.8	6.4	10.6	1.2	1	0	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
YtxH	PF12732.2	gi|257052507|ref|YP_003130340.1|	-	5.7	7.3	11.8	4.1e+02	1.4	8.2	2.4	1	1	0	1	1	1	0	YtxH-like	protein
PRKCSH-like	PF12999.2	gi|257052507|ref|YP_003130340.1|	-	6.7	6.2	7.3	9.6	5.7	0.2	2.0	1	1	1	2	2	2	0	Glucosidase	II	beta	subunit-like
vATP-synt_E	PF01991.13	gi|257052507|ref|YP_003130340.1|	-	6.9	5.8	25.9	1.8e+02	1.2	18.0	2.4	1	1	0	1	1	1	0	ATP	synthase	(E/31	kDa)	subunit
DinB_2	PF12867.2	gi|257052507|ref|YP_003130340.1|	-	7.3	6.9	9.1	22	5.3	6.3	1.9	1	1	0	1	1	1	0	DinB	superfamily
V_ATPase_I	PF01496.14	gi|257052508|ref|YP_003130341.1|	-	4e-66	223.4	20.2	1.5e-29	102.4	2.6	5.1	4	2	0	4	4	4	4	V-type	ATPase	116kDa	subunit	family
DUF4140	PF13600.1	gi|257052508|ref|YP_003130341.1|	-	0.059	13.8	0.8	5.1	7.5	0.4	2.4	2	0	0	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
DegS	PF05384.6	gi|257052508|ref|YP_003130341.1|	-	0.077	12.2	3.4	0.23	10.6	0.2	2.2	2	0	0	2	2	2	0	Sensor	protein	DegS
ATG16	PF08614.6	gi|257052508|ref|YP_003130341.1|	-	0.098	12.4	0.8	0.8	9.4	0.0	2.0	2	0	0	2	2	2	0	Autophagy	protein	16	(ATG16)
Prefoldin_2	PF01920.15	gi|257052508|ref|YP_003130341.1|	-	0.11	12.2	0.5	5.1	6.8	0.2	2.3	2	0	0	2	2	2	0	Prefoldin	subunit
NPV_P10	PF05531.7	gi|257052508|ref|YP_003130341.1|	-	0.13	12.5	0.1	0.33	11.2	0.1	1.6	1	0	0	1	1	1	0	Nucleopolyhedrovirus	P10	protein
FlaC_arch	PF05377.6	gi|257052508|ref|YP_003130341.1|	-	0.15	12.0	2.2	7.5	6.5	0.2	2.7	3	0	0	3	3	3	0	Flagella	accessory	protein	C	(FlaC)
DivIC	PF04977.10	gi|257052508|ref|YP_003130341.1|	-	1.2	8.7	3.1	1.4	8.4	0.3	2.1	2	0	0	2	2	2	0	Septum	formation	initiator
ATP-synt_C	PF00137.16	gi|257052509|ref|YP_003130342.1|	-	1.3e-14	53.8	8.6	1.5e-14	53.6	5.9	1.0	1	0	0	1	1	1	1	ATP	synthase	subunit	C
vATP-synt_E	PF01991.13	gi|257052510|ref|YP_003130343.1|	-	1.3e-41	142.1	11.3	1.8e-41	141.6	7.8	1.2	1	0	0	1	1	1	1	ATP	synthase	(E/31	kDa)	subunit
HrpE	PF06188.7	gi|257052510|ref|YP_003130343.1|	-	0.00052	19.8	7.8	0.00076	19.2	5.4	1.3	1	0	0	1	1	1	1	HrpE/YscL/FliH	and	V-type	ATPase	subunit	E
DivIVA	PF05103.8	gi|257052510|ref|YP_003130343.1|	-	0.026	14.5	8.5	0.026	14.5	5.9	2.2	1	1	1	2	2	2	0	DivIVA	protein
DUF885	PF05960.6	gi|257052510|ref|YP_003130343.1|	-	0.053	12.6	3.5	0.064	12.4	2.4	1.1	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF885)
AAA_13	PF13166.1	gi|257052510|ref|YP_003130343.1|	-	0.073	11.5	5.6	0.096	11.1	3.9	1.1	1	0	0	1	1	1	0	AAA	domain
ATP-synt_B	PF00430.13	gi|257052510|ref|YP_003130343.1|	-	0.13	12.0	20.0	0.42	10.4	8.5	2.3	1	1	1	2	2	2	0	ATP	synthase	B/B'	CF(0)
D5_N	PF08706.6	gi|257052510|ref|YP_003130343.1|	-	0.16	12.0	1.1	0.3	11.1	0.8	1.4	1	0	0	1	1	1	0	D5	N	terminal	like
IpaD	PF06511.6	gi|257052510|ref|YP_003130343.1|	-	0.28	10.1	2.3	0.34	9.8	1.6	1.1	1	0	0	1	1	1	0	Invasion	plasmid	antigen	IpaD
DUF3552	PF12072.3	gi|257052510|ref|YP_003130343.1|	-	0.43	9.7	18.3	0.63	9.2	12.7	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3552)
Mt_ATP-synt_B	PF05405.9	gi|257052510|ref|YP_003130343.1|	-	0.62	9.4	4.9	2.3	7.6	3.4	1.9	1	1	0	1	1	1	0	Mitochondrial	ATP	synthase	B	chain	precursor	(ATP-synt_B)
DUF2937	PF11157.3	gi|257052510|ref|YP_003130343.1|	-	0.96	8.7	3.1	0.69	9.2	0.3	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2937)
V_ATPase_I	PF01496.14	gi|257052510|ref|YP_003130343.1|	-	1.2	6.9	4.0	1.2	6.8	2.8	1.0	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
OmpH	PF03938.9	gi|257052510|ref|YP_003130343.1|	-	1.4	8.8	9.3	2.3	8.1	6.4	1.3	1	0	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
vATP-synt_AC39	PF01992.11	gi|257052511|ref|YP_003130344.1|	-	1.3e-87	294.1	4.8	1.4e-87	293.9	3.4	1.0	1	0	0	1	1	1	1	ATP	synthase	(C/AC39)	subunit
DUF3209	PF11483.3	gi|257052511|ref|YP_003130344.1|	-	0.12	12.7	2.7	0.43	10.9	0.3	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3209)
DnaG_DnaB_bind	PF08278.6	gi|257052511|ref|YP_003130344.1|	-	0.16	12.1	1.2	1	9.5	0.2	2.6	2	0	0	2	2	2	0	DNA	primase	DnaG	DnaB-binding
ATP-synt_F	PF01990.12	gi|257052512|ref|YP_003130345.1|	-	1.2e-18	67.3	0.1	1.4e-18	67.0	0.1	1.1	1	0	0	1	1	1	1	ATP	synthase	(F/14-kDa)	subunit
T2SE_Nter	PF05157.10	gi|257052512|ref|YP_003130345.1|	-	0.048	13.6	0.1	0.078	13.0	0.1	1.4	1	0	0	1	1	1	0	Type	II	secretion	system	(T2SS),	protein	E,	N-terminal	domain
Lactamase_B_3	PF13483.1	gi|257052512|ref|YP_003130345.1|	-	0.13	11.9	0.0	0.14	11.8	0.0	1.0	1	0	0	1	1	1	0	Beta-lactamase	superfamily	domain
ATP-synt_ab	PF00006.20	gi|257052513|ref|YP_003130346.1|	-	1.2e-94	315.8	0.0	1.7e-94	315.3	0.0	1.2	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
ATP-synt_ab_C	PF00306.22	gi|257052513|ref|YP_003130346.1|	-	2.5e-16	60.1	0.3	4.5e-16	59.3	0.2	1.4	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	chain,	C	terminal	domain
ATP-synt_ab_N	PF02874.18	gi|257052513|ref|YP_003130346.1|	-	5.7e-11	42.4	3.8	5.7e-11	42.4	2.6	2.4	2	0	0	2	2	2	1	ATP	synthase	alpha/beta	family,	beta-barrel	domain
AAA_22	PF13401.1	gi|257052513|ref|YP_003130346.1|	-	0.058	13.5	0.0	0.24	11.5	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
ATP-synt_ab	PF00006.20	gi|257052514|ref|YP_003130347.1|	-	3.2e-57	193.4	0.0	4.6e-57	192.9	0.0	1.2	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
ATP-synt_ab_C	PF00306.22	gi|257052514|ref|YP_003130347.1|	-	1.3e-16	61.0	0.2	2.4e-16	60.1	0.1	1.5	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	chain,	C	terminal	domain
ATP-synt_ab_N	PF02874.18	gi|257052514|ref|YP_003130347.1|	-	5.2e-14	52.2	0.8	5.2e-14	52.2	0.5	1.7	2	0	0	2	2	2	1	ATP	synthase	alpha/beta	family,	beta-barrel	domain
HAS-barrel	PF09378.5	gi|257052514|ref|YP_003130347.1|	-	7.8e-05	22.5	0.7	0.00028	20.7	0.3	2.2	2	0	0	2	2	2	1	HAS	barrel	domain
PMT_2	PF13231.1	gi|257052515|ref|YP_003130348.1|	-	0.0062	16.4	0.3	0.0062	16.4	0.2	1.0	1	0	0	1	1	1	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
5TM-5TMR_LYT	PF07694.7	gi|257052515|ref|YP_003130348.1|	-	0.0086	15.4	0.5	0.0093	15.3	0.4	1.0	1	0	0	1	1	1	1	5TMR	of	5TMR-LYT
BCD	PF15461.1	gi|257052516|ref|YP_003130349.1|	-	4.9e-72	242.4	14.5	4.9e-72	242.4	10.1	1.4	2	0	0	2	2	2	1	Beta-carotene	15,15'-dioxygenase
ATP-synt_D	PF01813.12	gi|257052517|ref|YP_003130350.1|	-	2e-60	203.7	10.6	2.4e-60	203.4	7.3	1.1	1	0	0	1	1	1	1	ATP	synthase	subunit	D
Ead_Ea22	PF13935.1	gi|257052517|ref|YP_003130350.1|	-	0.025	14.8	12.8	0.016	15.5	4.9	2.2	1	1	1	2	2	2	0	Ead/Ea22-like	protein
DPM3	PF08285.6	gi|257052517|ref|YP_003130350.1|	-	0.58	10.0	2.8	18	5.2	0.1	2.8	2	1	1	3	3	3	0	Dolichol-phosphate	mannosyltransferase	subunit	3	(DPM3)
DUF2562	PF10814.3	gi|257052517|ref|YP_003130350.1|	-	2.7	7.9	5.9	2	8.3	0.2	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2562)
DUF572	PF04502.8	gi|257052517|ref|YP_003130350.1|	-	8.3	5.5	17.3	10	5.2	12.0	1.5	1	1	0	1	1	1	0	Family	of	unknown	function	(DUF572)
DNA_ligase_A_M	PF01068.16	gi|257052518|ref|YP_003130351.1|	-	2.1e-13	50.0	0.0	3.9e-13	49.2	0.0	1.3	1	0	0	1	1	1	1	ATP	dependent	DNA	ligase	domain
RNA_ligase	PF09414.5	gi|257052518|ref|YP_003130351.1|	-	2.2e-07	30.8	0.0	3.8e-07	30.0	0.0	1.4	1	0	0	1	1	1	1	RNA	ligase
UvrD-helicase	PF00580.16	gi|257052519|ref|YP_003130352.1|	-	1e-25	90.6	0.0	1.6e-24	86.8	0.0	2.2	1	1	0	1	1	1	1	UvrD/REP	helicase	N-terminal	domain
UvrD_C	PF13361.1	gi|257052519|ref|YP_003130352.1|	-	2.1e-12	47.1	0.0	2.4e-08	33.8	0.0	2.3	2	0	0	2	2	2	2	UvrD-like	helicase	C-terminal	domain
AAA_19	PF13245.1	gi|257052519|ref|YP_003130352.1|	-	6.8e-12	44.9	0.1	1.8e-11	43.6	0.0	1.7	1	0	0	1	1	1	1	Part	of	AAA	domain
UvrD_C_2	PF13538.1	gi|257052519|ref|YP_003130352.1|	-	4.4e-07	29.9	0.6	1.6e-05	25.0	0.2	3.0	2	1	0	2	2	2	1	UvrD-like	helicase	C-terminal	domain
Viral_helicase1	PF01443.13	gi|257052519|ref|YP_003130352.1|	-	3.4e-05	23.4	0.1	0.68	9.4	0.1	3.6	3	1	0	3	3	3	2	Viral	(Superfamily	1)	RNA	helicase
AAA_30	PF13604.1	gi|257052519|ref|YP_003130352.1|	-	0.00083	18.9	0.2	0.062	12.8	0.0	2.8	3	0	0	3	3	3	1	AAA	domain
Herpes_ori_bp	PF02399.10	gi|257052519|ref|YP_003130352.1|	-	0.00091	17.3	0.0	0.0013	16.8	0.0	1.1	1	0	0	1	1	1	1	Origin	of	replication	binding	protein
AAA_11	PF13086.1	gi|257052519|ref|YP_003130352.1|	-	0.0013	18.4	0.0	0.0023	17.5	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|257052519|ref|YP_003130352.1|	-	0.0045	17.1	0.0	0.64	10.1	0.0	3.0	3	0	0	3	3	3	1	AAA	domain
AAA_25	PF13481.1	gi|257052519|ref|YP_003130352.1|	-	0.017	14.5	0.1	0.27	10.6	0.0	2.6	3	0	0	3	3	3	0	AAA	domain
DUF2075	PF09848.4	gi|257052519|ref|YP_003130352.1|	-	0.063	12.2	0.0	0.5	9.2	0.0	2.3	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
DUF3353	PF11833.3	gi|257052520|ref|YP_003130353.1|	-	0.016	14.6	2.3	0.02	14.3	1.6	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3353)
DUF751	PF05421.6	gi|257052520|ref|YP_003130353.1|	-	0.027	14.7	0.3	0.027	14.7	0.2	1.9	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF751)
QueT	PF06177.6	gi|257052520|ref|YP_003130353.1|	-	0.036	14.0	1.6	0.051	13.5	1.1	1.3	1	1	0	1	1	1	0	QueT	transporter
Cyto_ox_2	PF02322.10	gi|257052520|ref|YP_003130353.1|	-	0.12	11.4	3.7	0.14	11.3	2.6	1.1	1	0	0	1	1	1	0	Cytochrome	oxidase	subunit	II
DUF202	PF02656.10	gi|257052520|ref|YP_003130353.1|	-	0.13	12.4	3.7	5.6	7.2	0.3	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF202)
DUF2157	PF09925.4	gi|257052520|ref|YP_003130353.1|	-	0.25	10.9	2.5	0.31	10.6	1.7	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2157)
DUF2976	PF11190.3	gi|257052520|ref|YP_003130353.1|	-	0.34	10.4	2.4	0.21	11.1	0.3	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2976)
HTH_20	PF12840.2	gi|257052521|ref|YP_003130354.1|	-	1.5e-08	34.2	0.3	2.1e-08	33.8	0.2	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|257052521|ref|YP_003130354.1|	-	6.8e-08	32.0	0.4	1e-07	31.4	0.2	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.1	gi|257052521|ref|YP_003130354.1|	-	3.1e-05	23.2	0.0	5.1e-05	22.5	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.2	gi|257052521|ref|YP_003130354.1|	-	5.2e-05	22.8	0.1	7.5e-05	22.3	0.1	1.2	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.14	gi|257052521|ref|YP_003130354.1|	-	7.4e-05	22.3	0.2	0.00013	21.6	0.1	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
FUR	PF01475.14	gi|257052521|ref|YP_003130354.1|	-	0.00014	21.7	0.1	0.00016	21.6	0.0	1.2	1	0	0	1	1	1	1	Ferric	uptake	regulator	family
HTH_11	PF08279.7	gi|257052521|ref|YP_003130354.1|	-	0.00016	21.2	0.1	0.00025	20.6	0.1	1.3	1	0	0	1	1	1	1	HTH	domain
HTH_IclR	PF09339.5	gi|257052521|ref|YP_003130354.1|	-	0.00017	21.0	0.2	0.00025	20.5	0.1	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
PadR	PF03551.9	gi|257052521|ref|YP_003130354.1|	-	0.001	18.7	0.1	0.0017	18.0	0.0	1.4	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
Fe_dep_repress	PF01325.14	gi|257052521|ref|YP_003130354.1|	-	0.0016	18.3	0.6	0.02	14.7	0.2	2.4	2	1	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
TFIIE_alpha	PF02002.12	gi|257052521|ref|YP_003130354.1|	-	0.0018	17.7	0.2	0.0022	17.4	0.1	1.2	1	0	0	1	1	1	1	TFIIE	alpha	subunit
MarR	PF01047.17	gi|257052521|ref|YP_003130354.1|	-	0.0059	16.2	0.1	0.014	15.0	0.0	1.6	2	0	0	2	2	2	1	MarR	family
HTH_AsnC-type	PF13404.1	gi|257052521|ref|YP_003130354.1|	-	0.01	15.3	0.1	0.017	14.6	0.1	1.4	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
HTH_28	PF13518.1	gi|257052521|ref|YP_003130354.1|	-	0.014	15.3	0.0	0.023	14.7	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_27	PF13463.1	gi|257052521|ref|YP_003130354.1|	-	0.027	14.7	0.0	0.042	14.1	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_23	PF13384.1	gi|257052521|ref|YP_003130354.1|	-	0.065	12.9	0.0	0.11	12.1	0.0	1.4	1	0	0	1	1	1	0	Homeodomain-like	domain
OrfB_Zn_ribbon	PF07282.6	gi|257052522|ref|YP_003130355.1|	-	0.019	14.6	1.7	0.034	13.8	1.2	1.5	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zinc_ribbon_2	PF13240.1	gi|257052522|ref|YP_003130355.1|	-	0.035	13.6	3.4	0.051	13.0	2.4	1.3	1	0	0	1	1	1	0	zinc-ribbon	domain
DnaJ_CXXCXGXG	PF00684.14	gi|257052522|ref|YP_003130355.1|	-	0.039	14.0	1.6	0.054	13.5	1.1	1.3	1	0	0	1	1	1	0	DnaJ	central	domain
RecR	PF02132.10	gi|257052522|ref|YP_003130355.1|	-	0.093	12.1	0.9	0.16	11.4	0.6	1.3	1	0	0	1	1	1	0	RecR	protein
DZR	PF12773.2	gi|257052522|ref|YP_003130355.1|	-	0.15	11.8	3.7	0.19	11.5	2.5	1.4	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-ribbon_3	PF13248.1	gi|257052522|ref|YP_003130355.1|	-	0.15	11.2	2.5	0.27	10.4	1.8	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
UPF0547	PF10571.4	gi|257052522|ref|YP_003130355.1|	-	0.66	9.7	3.8	1.4	8.6	2.6	1.6	1	1	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
Zn-ribbon_8	PF09723.5	gi|257052522|ref|YP_003130355.1|	-	2.7	8.0	5.4	0.86	9.6	0.4	2.1	1	1	1	2	2	2	0	Zinc	ribbon	domain
CRISPR_Cas2	PF09827.4	gi|257052524|ref|YP_003130357.1|	-	1.3e-16	60.4	0.1	1.5e-16	60.2	0.1	1.0	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas2
Cas_Cas2CT1978	PF09707.5	gi|257052524|ref|YP_003130357.1|	-	0.0036	17.1	0.0	0.0038	17.1	0.0	1.1	1	0	0	1	1	1	1	CRISPR-associated	protein	(Cas_Cas2CT1978)
Cas_Cas1	PF01867.11	gi|257052525|ref|YP_003130358.1|	-	6.8e-85	284.5	0.0	8e-85	284.3	0.0	1.0	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas1
Cas_Cas4	PF01930.12	gi|257052526|ref|YP_003130359.1|	-	1.4e-45	155.0	0.0	1.7e-45	154.8	0.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF83
PDDEXK_1	PF12705.2	gi|257052526|ref|YP_003130359.1|	-	8.2e-07	28.6	0.1	8.9e-07	28.5	0.0	1.1	1	0	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
DEAD	PF00270.24	gi|257052527|ref|YP_003130360.1|	-	3.9e-05	23.2	0.0	8.9e-05	22.0	0.0	1.5	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
ResIII	PF04851.10	gi|257052527|ref|YP_003130360.1|	-	0.00035	20.4	0.0	0.00077	19.3	0.0	1.6	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
Cas_Cas5d	PF09704.5	gi|257052528|ref|YP_003130361.1|	-	3.6e-09	36.5	0.0	4.6e-09	36.2	0.0	1.1	1	0	0	1	1	1	1	CRISPR-associated	protein	(Cas_Cas5)
DUF694	PF05107.7	gi|257052529|ref|YP_003130362.1|	-	2.9e-63	213.6	0.1	3.3e-63	213.4	0.0	1.0	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF694)
Cas_TM1802	PF09484.5	gi|257052530|ref|YP_003130363.1|	-	4.3e-11	42.0	0.0	8.6e-06	24.5	0.0	2.1	2	0	0	2	2	2	2	CRISPR-associated	protein	TM1802	(cas_TM1802)
Cas_Cas6	PF01881.11	gi|257052531|ref|YP_003130364.1|	-	4.8e-11	43.1	0.0	8e-11	42.4	0.0	1.4	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas6
RNase_H_2	PF13482.1	gi|257052533|ref|YP_003130366.1|	-	3.5e-33	114.7	0.0	4.6e-33	114.3	0.0	1.2	1	0	0	1	1	1	1	RNase_H	superfamily
HHH_5	PF14520.1	gi|257052533|ref|YP_003130366.1|	-	0.0023	18.0	0.0	0.012	15.7	0.0	2.2	2	1	0	2	2	2	1	Helix-hairpin-helix	domain
DNA_pol_A_exo1	PF01612.15	gi|257052533|ref|YP_003130366.1|	-	0.0044	16.5	0.1	0.0092	15.4	0.1	1.6	1	1	0	1	1	1	1	3'-5'	exonuclease
DNA_pol_B_exo2	PF10108.4	gi|257052533|ref|YP_003130366.1|	-	0.021	14.3	0.0	0.048	13.1	0.0	1.6	2	0	0	2	2	2	0	Predicted	3'-5'	exonuclease	related	to	the	exonuclease	domain	of	PolB
RNase_T	PF00929.19	gi|257052533|ref|YP_003130366.1|	-	0.03	14.5	0.2	4.8	7.4	0.0	2.3	1	1	1	2	2	2	0	Exonuclease
HHH_2	PF12826.2	gi|257052533|ref|YP_003130366.1|	-	0.13	12.1	0.0	42	4.1	0.0	3.2	3	0	0	3	3	3	0	Helix-hairpin-helix	motif
Rhomboid	PF01694.17	gi|257052534|ref|YP_003130367.1|	-	1.3e-24	86.9	9.5	1.3e-24	86.9	6.6	1.7	1	1	1	2	2	2	1	Rhomboid	family
DUF1751	PF08551.5	gi|257052534|ref|YP_003130367.1|	-	8.9e-07	29.1	2.0	8.9e-07	29.1	1.4	2.6	2	1	0	3	3	3	1	Eukaryotic	integral	membrane	protein	(DUF1751)
RseC_MucC	PF04246.7	gi|257052534|ref|YP_003130367.1|	-	0.1	12.1	0.2	0.1	12.1	0.2	3.2	3	1	0	3	3	3	0	Positive	regulator	of	sigma(E),	RseC/MucC
DUF457	PF04307.9	gi|257052534|ref|YP_003130367.1|	-	0.9	8.8	15.7	0.042	13.1	4.1	2.7	2	1	0	2	2	2	0	Predicted	membrane-bound	metal-dependent	hydrolase	(DUF457)
zf-Mss51	PF13824.1	gi|257052535|ref|YP_003130368.1|	-	0.0025	17.6	5.5	0.0042	16.9	3.8	1.5	1	1	0	1	1	1	1	Zinc-finger	of	mitochondrial	splicing	suppressor	51
DZR	PF12773.2	gi|257052535|ref|YP_003130368.1|	-	0.0027	17.4	10.2	0.0039	16.9	7.1	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.1	gi|257052535|ref|YP_003130368.1|	-	0.012	15.0	8.2	0.072	12.5	2.7	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
Prok-RING_1	PF14446.1	gi|257052535|ref|YP_003130368.1|	-	0.015	15.0	10.6	0.44	10.3	7.7	2.1	1	1	1	2	2	2	0	Prokaryotic	RING	finger	family	1
zf-ribbon_3	PF13248.1	gi|257052535|ref|YP_003130368.1|	-	0.017	14.2	4.0	0.017	14.2	2.8	2.6	2	1	0	2	2	2	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|257052535|ref|YP_003130368.1|	-	0.034	14.1	12.8	0.76	9.7	0.1	3.3	1	1	0	2	2	2	0	Zinc	ribbon	domain
zf-TFIIB	PF13453.1	gi|257052535|ref|YP_003130368.1|	-	0.078	12.1	13.3	2.4	7.4	0.1	3.0	2	1	0	2	2	2	0	Transcription	factor	zinc-finger
zinc-ribbons_6	PF07191.7	gi|257052535|ref|YP_003130368.1|	-	0.13	12.1	8.5	0.26	11.1	5.9	1.6	1	1	0	1	1	1	0	zinc-ribbons
zf-MYND	PF01753.13	gi|257052535|ref|YP_003130368.1|	-	0.17	11.7	4.2	0.2	11.5	0.5	2.1	1	1	1	2	2	2	0	MYND	finger
Rubredoxin	PF00301.15	gi|257052535|ref|YP_003130368.1|	-	0.19	11.6	8.5	15	5.5	3.2	3.1	2	1	0	2	2	2	0	Rubredoxin
DUF2116	PF09889.4	gi|257052535|ref|YP_003130368.1|	-	0.21	11.4	6.2	0.76	9.6	2.1	2.0	1	1	1	2	2	2	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
zf-C2H2_6	PF13912.1	gi|257052535|ref|YP_003130368.1|	-	0.32	10.9	6.4	23	5.0	0.1	3.2	2	1	1	3	3	3	0	C2H2-type	zinc	finger
RNHCP	PF12647.2	gi|257052535|ref|YP_003130368.1|	-	0.49	10.2	5.7	0.57	10.0	3.9	1.2	1	0	0	1	1	1	0	RNHCP	domain
Cys_rich_CWC	PF14375.1	gi|257052535|ref|YP_003130368.1|	-	0.5	10.3	9.2	0.25	11.2	2.9	2.3	2	1	0	2	2	2	0	Cysteine-rich	CWC
zf-CXXC	PF02008.15	gi|257052535|ref|YP_003130368.1|	-	1.1	9.1	10.9	0.068	12.9	4.0	1.7	2	0	0	2	2	2	0	CXXC	zinc	finger	domain
UPF0547	PF10571.4	gi|257052535|ref|YP_003130368.1|	-	1.7	8.4	12.6	4.5	7.0	0.1	2.7	2	1	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
HypA	PF01155.14	gi|257052535|ref|YP_003130368.1|	-	2.2	7.9	8.5	12	5.5	5.9	1.9	1	1	1	2	2	2	0	Hydrogenase	expression/synthesis	hypA	family
zf-IS66	PF13005.2	gi|257052535|ref|YP_003130368.1|	-	2.5	8.1	13.5	3.8	7.5	2.2	3.2	2	1	1	3	3	3	0	zinc-finger	binding	domain	of	transposase	IS66
A2L_zn_ribbon	PF08792.5	gi|257052535|ref|YP_003130368.1|	-	3.6	7.1	0.0	3.6	7.1	0.0	3.2	3	0	0	3	3	3	0	A2L	zinc	ribbon	domain
zf-C4_Topoisom	PF01396.14	gi|257052535|ref|YP_003130368.1|	-	4	7.0	9.8	3.8	7.0	0.4	3.1	3	0	0	3	3	3	0	Topoisomerase	DNA	binding	C4	zinc	finger
Zn_Tnp_IS1	PF03811.8	gi|257052535|ref|YP_003130368.1|	-	4	7.0	11.7	8.3	5.9	0.6	3.1	2	1	1	3	3	3	0	InsA	N-terminal	domain
zf-tcix	PF14952.1	gi|257052535|ref|YP_003130368.1|	-	4.5	6.6	12.4	14	5.1	4.8	2.5	2	1	0	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
TFIIS_C	PF01096.13	gi|257052535|ref|YP_003130368.1|	-	5	6.8	8.9	16	5.2	0.4	3.1	3	0	0	3	3	3	0	Transcription	factor	S-II	(TFIIS)
zinc_ribbon_5	PF13719.1	gi|257052535|ref|YP_003130368.1|	-	6.6	6.4	11.7	11	5.7	2.1	3.5	1	1	1	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|257052535|ref|YP_003130368.1|	-	7.2	6.4	11.3	1.9	8.2	0.2	3.4	2	2	1	3	3	3	0	zinc-ribbon	domain
Metallothio_5	PF02067.10	gi|257052535|ref|YP_003130368.1|	-	7.6	6.6	15.6	11	6.1	7.2	2.1	2	0	0	2	2	2	0	Metallothionein	family	5
Lar_restr_allev	PF14354.1	gi|257052535|ref|YP_003130368.1|	-	9.6	6.5	12.8	17	5.7	8.9	1.8	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
FeoB_N	PF02421.13	gi|257052536|ref|YP_003130369.1|	-	2e-49	166.8	0.1	2.8e-49	166.3	0.1	1.2	1	0	0	1	1	1	1	Ferrous	iron	transport	protein	B
Gate	PF07670.9	gi|257052536|ref|YP_003130369.1|	-	2.3e-20	72.5	12.2	1.1e-12	47.7	2.4	2.7	2	0	0	2	2	2	2	Nucleoside	recognition
MMR_HSR1	PF01926.18	gi|257052536|ref|YP_003130369.1|	-	2.1e-15	56.6	0.0	3.6e-15	55.9	0.0	1.4	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
FeoB_C	PF07664.7	gi|257052536|ref|YP_003130369.1|	-	4e-10	38.9	0.1	4e-10	38.9	0.1	3.8	4	1	1	5	5	5	1	Ferrous	iron	transport	protein	B	C	terminus
AAA_17	PF13207.1	gi|257052536|ref|YP_003130369.1|	-	0.063	14.1	0.0	1.4	9.7	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
GTP_EFTU	PF00009.22	gi|257052536|ref|YP_003130369.1|	-	0.13	11.7	0.0	0.24	10.7	0.0	1.4	1	0	0	1	1	1	0	Elongation	factor	Tu	GTP	binding	domain
AAA_22	PF13401.1	gi|257052536|ref|YP_003130369.1|	-	0.16	12.1	0.0	0.44	10.6	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
Dynamin_N	PF00350.18	gi|257052536|ref|YP_003130369.1|	-	0.24	11.2	0.1	0.58	9.9	0.0	1.6	1	1	1	2	2	2	0	Dynamin	family
FeoA	PF04023.9	gi|257052537|ref|YP_003130370.1|	-	2.9e-10	39.9	0.5	3.6e-10	39.6	0.3	1.1	1	0	0	1	1	1	1	FeoA	domain
DUF123	PF01986.11	gi|257052538|ref|YP_003130371.1|	-	1.6e-25	89.1	0.0	2.2e-25	88.6	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF123
CoatB	PF10389.4	gi|257052538|ref|YP_003130371.1|	-	0.047	13.5	1.7	0.084	12.7	1.2	1.4	1	0	0	1	1	1	0	Bacteriophage	coat	protein	B
TMP-TENI	PF02581.12	gi|257052539|ref|YP_003130372.1|	-	1.7e-62	209.7	2.6	2e-62	209.5	1.8	1.0	1	0	0	1	1	1	1	Thiamine	monophosphate	synthase/TENI
NMO	PF03060.10	gi|257052539|ref|YP_003130372.1|	-	2.5e-05	23.6	5.9	3.6e-05	23.0	4.1	1.2	1	0	0	1	1	1	1	Nitronate	monooxygenase
ThiG	PF05690.9	gi|257052539|ref|YP_003130372.1|	-	0.001	18.2	3.9	0.0016	17.5	2.4	1.6	2	0	0	2	2	2	1	Thiazole	biosynthesis	protein	ThiG
DUF561	PF04481.7	gi|257052539|ref|YP_003130372.1|	-	0.04	12.8	0.7	0.098	11.5	0.3	1.7	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF561)
DHO_dh	PF01180.16	gi|257052539|ref|YP_003130372.1|	-	0.11	11.4	5.8	0.073	12.0	1.9	1.9	2	0	0	2	2	2	0	Dihydroorotate	dehydrogenase
PAS_9	PF13426.1	gi|257052540|ref|YP_003130373.1|	-	5.3e-47	158.5	0.5	1.1e-16	61.0	0.0	3.6	3	0	0	3	3	3	3	PAS	domain
PAS_4	PF08448.5	gi|257052540|ref|YP_003130373.1|	-	2.6e-42	143.3	9.2	2.3e-20	72.6	0.3	3.8	4	0	0	4	4	4	3	PAS	fold
PAS	PF00989.19	gi|257052540|ref|YP_003130373.1|	-	7.6e-38	128.7	1.2	1e-14	54.2	0.0	4.2	4	0	0	4	4	4	3	PAS	fold
PAS_8	PF13188.1	gi|257052540|ref|YP_003130373.1|	-	4.9e-29	99.1	0.2	5.7e-12	45.0	0.0	3.7	3	0	0	3	3	3	3	PAS	domain
HATPase_c	PF02518.21	gi|257052540|ref|YP_003130373.1|	-	6.1e-19	67.7	0.1	1.2e-18	66.8	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_3	PF08447.6	gi|257052540|ref|YP_003130373.1|	-	2.9e-09	36.9	0.0	0.0011	19.0	0.0	3.5	3	0	0	3	3	3	2	PAS	fold
PAS_7	PF12860.2	gi|257052540|ref|YP_003130373.1|	-	2.2e-08	34.1	1.0	0.0041	17.1	0.0	4.8	4	3	1	5	5	5	2	PAS	fold
PAS_10	PF13596.1	gi|257052540|ref|YP_003130373.1|	-	2.2e-08	34.3	0.0	5.2e-07	29.8	0.0	2.9	2	1	0	2	2	2	1	PAS	domain
HATPase_c_2	PF13581.1	gi|257052540|ref|YP_003130373.1|	-	9e-07	28.7	0.0	2.5e-06	27.2	0.0	1.8	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HisKA	PF00512.20	gi|257052540|ref|YP_003130373.1|	-	7.2e-05	22.6	2.9	0.00042	20.2	0.2	2.9	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_3	PF13589.1	gi|257052540|ref|YP_003130373.1|	-	0.0002	21.0	0.1	0.00041	20.0	0.1	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
E1-E2_ATPase	PF00122.15	gi|257052541|ref|YP_003130374.1|	-	3.8e-55	186.4	0.0	8.8e-55	185.2	0.0	1.7	1	0	0	1	1	1	1	E1-E2	ATPase
Hydrolase	PF00702.21	gi|257052541|ref|YP_003130374.1|	-	5.4e-44	151.1	8.7	6.6e-44	150.8	4.8	2.0	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.21	gi|257052541|ref|YP_003130374.1|	-	4.8e-15	55.4	0.1	1.7e-14	53.6	0.0	2.0	2	0	0	2	2	2	1	Heavy-metal-associated	domain
HAD	PF12710.2	gi|257052541|ref|YP_003130374.1|	-	8.3e-14	52.1	0.0	4.1e-13	49.9	0.0	2.2	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.7	gi|257052541|ref|YP_003130374.1|	-	0.0049	16.4	0.5	0.011	15.3	0.4	1.5	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
AP_endonuc_2	PF01261.19	gi|257052541|ref|YP_003130374.1|	-	0.02	14.2	0.3	0.044	13.0	0.2	1.6	1	0	0	1	1	1	0	Xylose	isomerase-like	TIM	barrel
TAT_signal	PF10518.4	gi|257052542|ref|YP_003130375.1|	-	0.006	16.4	2.1	0.015	15.2	1.5	1.7	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
HTH_10	PF04967.7	gi|257052543|ref|YP_003130376.1|	-	1.4e-15	56.5	0.0	2.5e-15	55.7	0.0	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
MarR_2	PF12802.2	gi|257052543|ref|YP_003130376.1|	-	6.4e-05	22.5	0.0	0.00013	21.5	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_30	PF13556.1	gi|257052543|ref|YP_003130376.1|	-	0.0001	21.8	0.1	0.00024	20.6	0.0	1.6	1	0	0	1	1	1	1	PucR	C-terminal	helix-turn-helix	domain
HTH_8	PF02954.14	gi|257052543|ref|YP_003130376.1|	-	0.0015	17.9	0.0	0.0037	16.7	0.0	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	Fis	family
HTH_24	PF13412.1	gi|257052543|ref|YP_003130376.1|	-	0.0019	17.5	0.0	0.0034	16.7	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_psq	PF05225.11	gi|257052543|ref|YP_003130376.1|	-	0.055	13.0	0.0	0.055	13.0	0.0	2.1	3	0	0	3	3	3	0	helix-turn-helix,	Psq	domain
HTH_20	PF12840.2	gi|257052543|ref|YP_003130376.1|	-	0.077	12.8	0.1	0.21	11.4	0.0	1.8	1	0	0	1	1	1	0	Helix-turn-helix	domain
Sigma70_r4_2	PF08281.7	gi|257052543|ref|YP_003130376.1|	-	0.13	11.7	0.0	0.31	10.5	0.0	1.6	2	0	0	2	2	2	0	Sigma-70,	region	4
PEPcase	PF00311.12	gi|257052544|ref|YP_003130377.1|	-	1.4e-231	770.6	0.0	1.8e-231	770.2	0.0	1.1	1	0	0	1	1	1	1	Phosphoenolpyruvate	carboxylase
PEPcase_2	PF14010.1	gi|257052544|ref|YP_003130377.1|	-	0.0011	17.3	0.0	0.0024	16.2	0.0	1.5	1	0	0	1	1	1	1	Phosphoenolpyruvate	carboxylase
CCG	PF02754.11	gi|257052545|ref|YP_003130378.1|	-	2.5e-22	78.6	7.0	4.9e-11	42.4	0.2	3.2	3	0	0	3	3	3	2	Cysteine-rich	domain
Fer4_17	PF13534.1	gi|257052545|ref|YP_003130378.1|	-	6.8e-07	29.5	3.1	6.8e-07	29.5	2.2	3.5	3	1	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|257052545|ref|YP_003130378.1|	-	1e-05	25.4	4.4	1e-05	25.4	3.1	2.9	3	1	0	3	3	3	1	4Fe-4S	dicluster	domain
zf-CSL	PF05207.8	gi|257052545|ref|YP_003130378.1|	-	0.0061	16.0	9.9	0.031	13.7	0.0	3.7	4	0	0	4	4	4	2	CSL	zinc	finger
Fer4_7	PF12838.2	gi|257052545|ref|YP_003130378.1|	-	0.0083	16.4	10.8	0.084	13.2	6.2	3.1	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|257052545|ref|YP_003130378.1|	-	0.076	13.2	15.3	0.47	10.7	6.5	3.7	3	1	1	4	4	4	0	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|257052545|ref|YP_003130378.1|	-	1.2	9.0	17.7	0.022	14.5	5.9	2.8	3	1	0	3	3	3	0	4Fe-4S	dicluster	domain
FAD_binding_2	PF00890.19	gi|257052546|ref|YP_003130379.1|	-	1.2e-32	113.2	6.0	1.5e-32	113.0	4.2	1.0	1	0	0	1	1	1	1	FAD	binding	domain
DAO	PF01266.19	gi|257052546|ref|YP_003130379.1|	-	3.7e-07	29.3	3.9	6.5e-07	28.5	0.3	2.5	3	1	0	3	3	3	1	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.9	gi|257052546|ref|YP_003130379.1|	-	2.8e-06	27.3	0.2	2.6e-05	24.1	0.2	2.2	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.2	gi|257052546|ref|YP_003130379.1|	-	7.1e-06	25.3	3.0	1.5e-05	24.3	2.1	1.5	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
GIDA	PF01134.17	gi|257052546|ref|YP_003130379.1|	-	1.7e-05	23.8	0.2	1.7e-05	23.8	0.1	1.6	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
FAD_binding_3	PF01494.14	gi|257052546|ref|YP_003130379.1|	-	5e-05	22.5	0.6	7e-05	22.0	0.4	1.2	1	0	0	1	1	1	1	FAD	binding	domain
NAD_binding_8	PF13450.1	gi|257052546|ref|YP_003130379.1|	-	0.00035	20.5	0.8	0.0016	18.4	0.5	2.2	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox	PF00070.22	gi|257052546|ref|YP_003130379.1|	-	0.00051	20.3	0.4	0.0012	19.2	0.3	1.6	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.9	gi|257052546|ref|YP_003130379.1|	-	0.0016	17.0	0.2	0.0026	16.3	0.1	1.3	1	0	0	1	1	1	1	HI0933-like	protein
Lycopene_cycl	PF05834.7	gi|257052546|ref|YP_003130379.1|	-	0.013	14.3	0.3	0.02	13.7	0.2	1.3	1	0	0	1	1	1	0	Lycopene	cyclase	protein
NAD_binding_7	PF13241.1	gi|257052546|ref|YP_003130379.1|	-	0.017	15.3	0.0	0.036	14.3	0.0	1.5	1	0	0	1	1	1	0	Putative	NAD(P)-binding
3HCDH_N	PF02737.13	gi|257052546|ref|YP_003130379.1|	-	0.066	12.8	0.3	0.1	12.2	0.2	1.2	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
AlaDh_PNT_C	PF01262.16	gi|257052546|ref|YP_003130379.1|	-	0.071	12.6	0.1	0.13	11.8	0.1	1.3	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
DAO	PF01266.19	gi|257052547|ref|YP_003130380.1|	-	7e-58	196.2	0.8	1.2e-57	195.4	0.6	1.4	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Fer2_BFD	PF04324.10	gi|257052547|ref|YP_003130380.1|	-	3e-08	33.5	1.1	8.1e-08	32.2	0.8	1.7	1	0	0	1	1	1	1	BFD-like	[2Fe-2S]	binding	domain
Pyr_redox_2	PF07992.9	gi|257052547|ref|YP_003130380.1|	-	4.5e-07	29.9	0.0	7.1e-05	22.7	0.0	2.2	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.19	gi|257052547|ref|YP_003130380.1|	-	6e-06	25.3	5.5	5.3e-05	22.2	3.8	2.1	1	1	0	1	1	1	1	FAD	binding	domain
NAD_binding_8	PF13450.1	gi|257052547|ref|YP_003130380.1|	-	0.0014	18.5	0.5	0.012	15.5	0.6	2.3	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
3HCDH_N	PF02737.13	gi|257052547|ref|YP_003130380.1|	-	0.0026	17.4	0.3	0.0047	16.5	0.2	1.4	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
FAD_binding_3	PF01494.14	gi|257052547|ref|YP_003130380.1|	-	0.0043	16.1	0.9	0.065	12.2	0.0	2.1	2	0	0	2	2	2	1	FAD	binding	domain
HI0933_like	PF03486.9	gi|257052547|ref|YP_003130380.1|	-	0.017	13.5	0.2	0.028	12.8	0.2	1.3	1	0	0	1	1	1	0	HI0933-like	protein
Pyr_redox	PF00070.22	gi|257052547|ref|YP_003130380.1|	-	0.029	14.7	0.8	0.094	13.1	0.5	1.9	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.2	gi|257052547|ref|YP_003130380.1|	-	0.037	13.0	7.0	0.11	11.5	4.7	2.0	1	1	0	1	1	1	0	FAD	dependent	oxidoreductase
GIDA	PF01134.17	gi|257052547|ref|YP_003130380.1|	-	0.16	10.8	0.9	0.33	9.7	0.6	1.5	1	0	0	1	1	1	0	Glucose	inhibited	division	protein	A
NAD_binding_10	PF13460.1	gi|257052547|ref|YP_003130380.1|	-	0.33	10.9	3.7	0.93	9.4	0.6	2.8	3	0	0	3	3	3	0	NADH(P)-binding
FGGY_N	PF00370.16	gi|257052548|ref|YP_003130381.1|	-	5.5e-69	232.1	0.0	7.4e-69	231.7	0.0	1.2	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	N-terminal	domain
FGGY_C	PF02782.11	gi|257052548|ref|YP_003130381.1|	-	2.1e-59	200.5	2.2	3.5e-59	199.7	1.5	1.4	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	C-terminal	domain
BcrAD_BadFG	PF01869.15	gi|257052548|ref|YP_003130381.1|	-	0.0021	17.4	0.2	0.038	13.2	0.0	2.2	2	0	0	2	2	2	1	BadF/BadG/BcrA/BcrD	ATPase	family
ROK	PF00480.15	gi|257052550|ref|YP_003130383.1|	-	1.6e-31	109.4	0.4	2.3e-31	108.9	0.2	1.2	1	0	0	1	1	1	1	ROK	family
BcrAD_BadFG	PF01869.15	gi|257052550|ref|YP_003130383.1|	-	0.0016	17.7	0.2	0.0029	16.9	0.2	1.4	1	0	0	1	1	1	1	BadF/BadG/BcrA/BcrD	ATPase	family
FGGY_N	PF00370.16	gi|257052550|ref|YP_003130383.1|	-	0.0082	15.4	0.0	0.038	13.2	0.0	1.9	1	1	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	N-terminal	domain
PK	PF00224.16	gi|257052551|ref|YP_003130384.1|	-	5.8e-114	380.3	2.1	9e-114	379.6	1.4	1.2	1	0	0	1	1	1	1	Pyruvate	kinase,	barrel	domain
PK_C	PF02887.11	gi|257052551|ref|YP_003130384.1|	-	3.1e-31	107.3	2.0	6.3e-31	106.3	1.4	1.5	1	0	0	1	1	1	1	Pyruvate	kinase,	alpha/beta	domain
PEP-utilizers	PF00391.18	gi|257052551|ref|YP_003130384.1|	-	9.2e-09	34.7	0.1	4.3e-08	32.6	0.1	2.3	1	0	0	1	1	1	1	PEP-utilising	enzyme,	mobile	domain
HpcH_HpaI	PF03328.9	gi|257052551|ref|YP_003130384.1|	-	0.021	13.7	0.7	0.062	12.1	0.3	1.9	1	1	1	2	2	2	0	HpcH/HpaI	aldolase/citrate	lyase	family
Glyoxalase_2	PF12681.2	gi|257052552|ref|YP_003130385.1|	-	6.5e-26	91.0	0.7	2.7e-25	89.0	0.4	1.9	2	0	0	2	2	2	1	Glyoxalase-like	domain
Glyoxalase	PF00903.20	gi|257052552|ref|YP_003130385.1|	-	4.1e-16	59.1	0.1	6.4e-16	58.5	0.1	1.3	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
PBP	PF01161.15	gi|257052552|ref|YP_003130385.1|	-	1.5e-06	28.1	0.0	3.8e-06	26.8	0.0	1.7	2	0	0	2	2	2	1	Phosphatidylethanolamine-binding	protein
Glyoxalase_4	PF13669.1	gi|257052552|ref|YP_003130385.1|	-	0.013	15.4	0.5	0.098	12.6	0.2	2.2	1	1	0	1	1	1	0	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyco_hydro_10	PF00331.15	gi|257052553|ref|YP_003130386.1|	-	4.4e-91	305.2	0.0	4.9e-91	305.0	0.0	1.0	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	10
Cellulase-like	PF12876.2	gi|257052553|ref|YP_003130386.1|	-	0.0059	17.0	0.1	0.077	13.4	0.0	2.4	2	0	0	2	2	2	1	Sugar-binding	cellulase-like
Cellulase	PF00150.13	gi|257052553|ref|YP_003130386.1|	-	0.0087	15.2	0.1	1.2	8.2	0.0	2.2	2	0	0	2	2	2	2	Cellulase	(glycosyl	hydrolase	family	5)
HAD_2	PF13419.1	gi|257052554|ref|YP_003130387.1|	-	6.1e-15	55.8	0.1	8.6e-15	55.3	0.1	1.2	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|257052554|ref|YP_003130387.1|	-	4.2e-10	39.2	0.2	1.1e-09	37.8	0.1	1.7	2	0	0	2	2	2	1	HAD-hyrolase-like
Hydrolase	PF00702.21	gi|257052554|ref|YP_003130387.1|	-	2e-08	34.9	0.0	0.0021	18.4	0.0	2.2	2	0	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
POR	PF01558.13	gi|257052555|ref|YP_003130388.1|	-	4.6e-40	137.3	0.2	5.3e-40	137.1	0.1	1.0	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
Fer4	PF00037.22	gi|257052556|ref|YP_003130389.1|	-	1.3e-14	53.0	16.7	5.1e-09	35.3	3.3	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.1	gi|257052556|ref|YP_003130389.1|	-	2.3e-13	49.7	19.9	2.5e-10	39.9	7.9	1.6	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.1	gi|257052556|ref|YP_003130389.1|	-	8.2e-13	48.0	8.5	1.1e-12	47.6	5.9	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|257052556|ref|YP_003130389.1|	-	1.8e-12	47.4	20.6	1.8e-09	37.8	7.5	1.9	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|257052556|ref|YP_003130389.1|	-	1.1e-10	40.7	13.5	3.2e-05	23.6	1.5	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.1	gi|257052556|ref|YP_003130389.1|	-	1.2e-10	41.5	22.5	9.1e-08	32.2	8.7	1.9	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|257052556|ref|YP_003130389.1|	-	1.2e-08	34.4	15.7	2.2e-06	27.2	2.2	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_17	PF13534.1	gi|257052556|ref|YP_003130389.1|	-	1.4e-07	31.7	3.4	0.0015	18.8	0.1	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|257052556|ref|YP_003130389.1|	-	1.4e-06	28.2	10.1	0.00034	20.5	8.3	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|257052556|ref|YP_003130389.1|	-	1.7e-06	28.3	11.8	0.0027	18.1	0.8	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|257052556|ref|YP_003130389.1|	-	9.1e-06	26.3	13.7	0.00029	21.5	1.2	2.6	2	1	1	3	3	3	3	4Fe-4S	double	cluster	binding	domain
Fer4_4	PF12800.2	gi|257052556|ref|YP_003130389.1|	-	7.1e-05	22.8	14.1	0.036	14.3	2.1	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_15	PF13459.1	gi|257052556|ref|YP_003130389.1|	-	0.00035	21.0	14.6	0.013	16.0	1.4	2.6	2	1	0	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_3	PF12798.2	gi|257052556|ref|YP_003130389.1|	-	0.0004	20.7	18.4	0.0016	18.8	4.3	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_13	PF13370.1	gi|257052556|ref|YP_003130389.1|	-	0.00075	19.8	16.3	0.0055	17.0	3.7	2.4	1	1	1	2	2	2	2	4Fe-4S	single	cluster	domain
PNK3P	PF08645.6	gi|257052556|ref|YP_003130389.1|	-	0.11	11.9	0.0	0.13	11.7	0.0	1.1	1	0	0	1	1	1	0	Polynucleotide	kinase	3	phosphatase
Methyltransf_13	PF08421.6	gi|257052556|ref|YP_003130389.1|	-	0.23	11.0	2.8	0.26	10.8	1.4	1.5	1	1	0	1	1	1	0	Putative	zinc	binding	domain
POR_N	PF01855.14	gi|257052557|ref|YP_003130390.1|	-	2.1e-68	230.2	0.6	2.9e-68	229.8	0.4	1.1	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
Transketolase_C	PF02780.15	gi|257052557|ref|YP_003130390.1|	-	3.9e-05	23.5	0.0	8.4e-05	22.4	0.0	1.7	1	0	0	1	1	1	1	Transketolase,	C-terminal	domain
TPP_enzyme_C	PF02775.16	gi|257052558|ref|YP_003130391.1|	-	5.9e-28	97.3	0.1	8.6e-28	96.8	0.1	1.2	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
DXP_synthase_N	PF13292.1	gi|257052558|ref|YP_003130391.1|	-	0.073	11.9	0.6	0.29	10.0	0.4	1.9	1	1	0	1	1	1	0	1-deoxy-D-xylulose-5-phosphate	synthase
MCPsignal	PF00015.16	gi|257052559|ref|YP_003130392.1|	-	1.4e-43	148.9	51.6	8.5e-41	139.8	19.9	3.0	2	1	1	3	3	3	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
Laminin_I	PF06008.9	gi|257052559|ref|YP_003130392.1|	-	8.8e-08	31.7	17.9	0.00021	20.6	2.7	3.6	3	1	0	3	3	3	2	Laminin	Domain	I
IncA	PF04156.9	gi|257052559|ref|YP_003130392.1|	-	2.2e-05	24.1	19.3	0.0009	18.8	0.0	4.2	2	1	1	3	3	3	1	IncA	protein
DUF948	PF06103.6	gi|257052559|ref|YP_003130392.1|	-	4.5e-05	23.2	23.1	0.64	9.9	3.5	6.0	3	2	3	6	6	5	1	Bacterial	protein	of	unknown	function	(DUF948)
AAA_13	PF13166.1	gi|257052559|ref|YP_003130392.1|	-	0.00012	20.7	24.5	0.21	10.0	0.0	3.1	2	1	0	2	2	2	2	AAA	domain
Fib_alpha	PF08702.5	gi|257052559|ref|YP_003130392.1|	-	0.00043	20.4	18.6	0.12	12.4	0.5	4.6	2	1	2	4	4	4	2	Fibrinogen	alpha/beta	chain	family
DUF1664	PF07889.7	gi|257052559|ref|YP_003130392.1|	-	0.00049	19.8	27.4	0.081	12.7	1.0	5.1	2	1	2	5	5	5	1	Protein	of	unknown	function	(DUF1664)
Laminin_II	PF06009.7	gi|257052559|ref|YP_003130392.1|	-	0.00064	19.4	29.8	0.0076	16.0	3.3	4.9	3	2	3	6	6	6	2	Laminin	Domain	II
V_ATPase_I	PF01496.14	gi|257052559|ref|YP_003130392.1|	-	0.00099	17.1	13.0	2.5	5.8	11.4	2.3	2	1	0	2	2	2	1	V-type	ATPase	116kDa	subunit	family
TPR_MLP1_2	PF07926.7	gi|257052559|ref|YP_003130392.1|	-	0.0047	16.6	26.4	0.9	9.2	6.4	3.9	3	1	0	3	3	3	2	TPR/MLP1/MLP2-like	protein
DUF3450	PF11932.3	gi|257052559|ref|YP_003130392.1|	-	0.0065	15.7	0.0	0.0065	15.7	0.0	4.4	2	1	2	4	4	4	1	Protein	of	unknown	function	(DUF3450)
DUF972	PF06156.8	gi|257052559|ref|YP_003130392.1|	-	0.0072	16.6	16.7	2.3	8.6	0.0	5.0	2	1	1	4	4	4	1	Protein	of	unknown	function	(DUF972)
Myosin_tail_1	PF01576.14	gi|257052559|ref|YP_003130392.1|	-	0.0087	13.8	0.7	0.0087	13.8	0.5	3.4	2	1	1	3	3	3	2	Myosin	tail
Reo_sigmaC	PF04582.7	gi|257052559|ref|YP_003130392.1|	-	0.013	14.6	0.2	0.013	14.6	0.1	4.1	2	1	2	4	4	4	0	Reovirus	sigma	C	capsid	protein
TMF_DNA_bd	PF12329.3	gi|257052559|ref|YP_003130392.1|	-	0.019	14.7	0.9	0.019	14.7	0.7	5.1	4	2	1	5	5	5	0	TATA	element	modulatory	factor	1	DNA	binding
DUF2580	PF10824.3	gi|257052559|ref|YP_003130392.1|	-	0.023	15.0	2.5	0.023	15.0	1.7	5.9	4	3	3	7	7	5	0	Protein	of	unknown	function	(DUF2580)
CENP-F_leu_zip	PF10473.4	gi|257052559|ref|YP_003130392.1|	-	0.028	14.2	0.1	0.028	14.2	0.1	4.0	3	2	0	3	3	2	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Prefoldin_2	PF01920.15	gi|257052559|ref|YP_003130392.1|	-	0.035	13.8	24.4	0.1	12.3	0.5	4.4	3	2	2	5	5	5	0	Prefoldin	subunit
NPV_P10	PF05531.7	gi|257052559|ref|YP_003130392.1|	-	0.039	14.2	26.5	2	8.6	1.9	5.5	4	1	1	5	5	5	0	Nucleopolyhedrovirus	P10	protein
Mnd1	PF03962.10	gi|257052559|ref|YP_003130392.1|	-	0.049	13.2	24.5	1	8.9	0.1	3.6	2	1	0	3	3	3	0	Mnd1	family
EzrA	PF06160.7	gi|257052559|ref|YP_003130392.1|	-	0.05	11.7	28.4	1.2	7.2	5.8	3.7	2	1	0	3	3	3	0	Septation	ring	formation	regulator,	EzrA
LOH1CR12	PF10158.4	gi|257052559|ref|YP_003130392.1|	-	0.058	13.1	6.8	2.6	7.8	0.5	3.2	2	1	1	3	3	3	0	Tumour	suppressor	protein
APG6	PF04111.7	gi|257052559|ref|YP_003130392.1|	-	0.059	12.4	24.8	1.8	7.5	2.7	3.3	2	1	0	3	3	3	0	Autophagy	protein	Apg6
Mod_r	PF07200.8	gi|257052559|ref|YP_003130392.1|	-	0.063	13.1	18.1	0.56	10.1	2.0	3.8	2	1	1	4	4	4	0	Modifier	of	rudimentary	(Mod(r))	protein
Sec5	PF15469.1	gi|257052559|ref|YP_003130392.1|	-	0.13	12.0	8.2	0.048	13.3	3.2	2.2	2	1	0	2	2	1	0	Exocyst	complex	component	Sec5
Katanin_con80	PF13925.1	gi|257052559|ref|YP_003130392.1|	-	0.15	11.8	2.1	5.8	6.6	0.1	3.1	2	2	1	3	3	3	0	con80	domain	of	Katanin
RTBV_P46	PF06216.6	gi|257052559|ref|YP_003130392.1|	-	0.19	10.5	1.1	1	8.1	0.0	2.3	2	1	1	3	3	3	0	Rice	tungro	bacilliform	virus	P46	protein
ATG_C	PF09333.6	gi|257052559|ref|YP_003130392.1|	-	0.27	11.3	10.0	7.2	6.8	0.1	4.5	3	1	0	4	4	4	0	ATG	C	terminal	domain
DUF2408	PF10303.4	gi|257052559|ref|YP_003130392.1|	-	0.31	11.1	10.1	3.6	7.7	1.1	3.4	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF2408)
Spc7	PF08317.6	gi|257052559|ref|YP_003130392.1|	-	0.33	9.5	24.1	3	6.4	5.3	3.3	2	1	1	3	3	3	0	Spc7	kinetochore	protein
Muted	PF14942.1	gi|257052559|ref|YP_003130392.1|	-	0.36	10.6	20.1	1.2	9.0	3.3	3.4	3	0	0	3	3	3	0	Organelle	biogenesis,	Muted-like	protein
GldM_N	PF12081.3	gi|257052559|ref|YP_003130392.1|	-	0.4	10.1	15.0	0.59	9.6	3.1	4.0	1	1	4	5	5	5	0	GldM	N-terminal	domain
DUF1381	PF07129.6	gi|257052559|ref|YP_003130392.1|	-	0.4	10.1	5.5	14	5.1	0.0	3.6	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1381)
BLOC1_2	PF10046.4	gi|257052559|ref|YP_003130392.1|	-	0.45	10.6	22.6	0.15	12.1	0.4	5.6	3	2	2	6	6	5	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
DivIC	PF04977.10	gi|257052559|ref|YP_003130392.1|	-	0.77	9.2	0.0	0.77	9.2	0.0	5.3	4	3	1	6	6	5	0	Septum	formation	initiator
DUF3407	PF11887.3	gi|257052559|ref|YP_003130392.1|	-	0.96	8.6	12.0	0.042	13.1	0.5	2.9	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3407)
Seryl_tRNA_N	PF02403.17	gi|257052559|ref|YP_003130392.1|	-	1	9.3	25.1	4.2	7.4	1.0	5.4	3	2	3	6	6	6	0	Seryl-tRNA	synthetase	N-terminal	domain
Tropomyosin_1	PF12718.2	gi|257052559|ref|YP_003130392.1|	-	1.5	8.7	35.5	0.68	9.7	0.1	4.0	3	2	0	3	3	3	0	Tropomyosin	like
Bacillus_HBL	PF05791.6	gi|257052559|ref|YP_003130392.1|	-	1.5	8.1	10.9	0.99	8.7	1.1	3.5	2	1	2	4	4	4	0	Bacillus	haemolytic	enterotoxin	(HBL)
IFT57	PF10498.4	gi|257052559|ref|YP_003130392.1|	-	1.8	7.2	21.9	1.7	7.3	2.8	3.3	2	1	0	3	3	3	0	Intra-flagellar	transport	protein	57
IFT46_B_C	PF12317.3	gi|257052559|ref|YP_003130392.1|	-	1.9	7.8	10.2	4.9	6.4	2.3	2.9	2	1	1	3	3	2	0	Intraflagellar	transport	complex	B	protein	46	C	terminal
COG2	PF06148.6	gi|257052559|ref|YP_003130392.1|	-	1.9	8.3	20.8	15	5.4	0.0	5.3	2	1	2	4	4	4	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
TMPIT	PF07851.8	gi|257052559|ref|YP_003130392.1|	-	2	7.4	9.3	3	6.8	0.7	2.5	2	0	0	2	2	2	0	TMPIT-like	protein
DUF4546	PF15079.1	gi|257052559|ref|YP_003130392.1|	-	2	7.5	5.9	10	5.1	0.2	2.8	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4546)
Cep57_CLD_2	PF14197.1	gi|257052559|ref|YP_003130392.1|	-	2	8.3	8.9	0.29	11.1	1.8	2.9	3	1	0	3	3	1	0	Centrosome	localisation	domain	of	PPC89
Lectin_N	PF03954.9	gi|257052559|ref|YP_003130392.1|	-	2.8	7.3	10.4	3.6	6.9	0.7	3.5	3	2	1	4	4	4	0	Hepatic	lectin,	N-terminal	domain
Barstar	PF01337.13	gi|257052559|ref|YP_003130392.1|	-	3.3	7.6	11.4	3.7	7.4	0.0	5.0	4	2	1	5	5	5	0	Barstar	(barnase	inhibitor)
DUF904	PF06005.7	gi|257052559|ref|YP_003130392.1|	-	3.4	8.0	7.9	3	8.1	0.1	3.7	3	1	0	3	3	3	0	Protein	of	unknown	function	(DUF904)
DASH_Dam1	PF08653.5	gi|257052559|ref|YP_003130392.1|	-	3.8	7.3	12.0	7.2	6.4	0.1	6.3	6	3	3	9	9	8	0	DASH	complex	subunit	Dam1
DUF4164	PF13747.1	gi|257052559|ref|YP_003130392.1|	-	4.3	7.5	29.8	0.11	12.6	3.7	4.6	2	1	1	4	4	4	0	Domain	of	unknown	function	(DUF4164)
HisKA_3	PF07730.8	gi|257052559|ref|YP_003130392.1|	-	5.8	7.3	28.2	10	6.5	1.0	6.4	2	1	5	7	7	6	0	Histidine	kinase
AATF-Che1	PF13339.1	gi|257052559|ref|YP_003130392.1|	-	5.8	7.0	18.3	2.7	8.1	2.0	4.1	2	1	2	4	4	4	0	Apoptosis	antagonizing	transcription	factor
Nup54	PF13874.1	gi|257052559|ref|YP_003130392.1|	-	6.4	6.4	16.1	2.5	7.7	0.7	4.0	3	1	0	4	4	4	0	Nucleoporin	complex	subunit	54
DUF4559	PF15112.1	gi|257052559|ref|YP_003130392.1|	-	6.8	5.7	16.3	5.8	5.9	5.7	2.5	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4559)
DUF4200	PF13863.1	gi|257052559|ref|YP_003130392.1|	-	7.9	6.4	21.6	3.6	7.5	0.2	3.9	3	1	0	3	3	3	0	Domain	of	unknown	function	(DUF4200)
PspB	PF06667.7	gi|257052559|ref|YP_003130392.1|	-	8.4	6.4	14.8	14	5.7	0.3	5.1	5	1	0	5	5	4	0	Phage	shock	protein	B
Atg14	PF10186.4	gi|257052559|ref|YP_003130392.1|	-	10	4.9	14.2	4.3	6.1	0.2	3.1	2	1	0	3	3	3	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
Bactofilin	PF04519.8	gi|257052560|ref|YP_003130393.1|	-	5.3e-12	45.6	3.7	2e-09	37.3	0.1	3.1	2	1	1	3	3	3	2	Polymer-forming	cytoskeletal
Hexapep	PF00132.19	gi|257052560|ref|YP_003130393.1|	-	5.2e-06	25.7	7.3	0.022	14.2	0.0	5.7	5	2	1	6	6	6	4	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.1	gi|257052560|ref|YP_003130393.1|	-	0.68	9.5	9.2	1.1	8.8	0.0	3.9	5	1	0	5	5	5	0	Hexapeptide	repeat	of	succinyl-transferase
ERCC4	PF02732.10	gi|257052562|ref|YP_003130395.1|	-	1.6e-22	79.8	0.0	6.2e-22	77.9	0.0	2.1	2	0	0	2	2	2	1	ERCC4	domain
Helicase_C	PF00271.26	gi|257052562|ref|YP_003130395.1|	-	7.2e-19	67.4	0.0	2.1e-18	65.9	0.0	1.8	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.24	gi|257052562|ref|YP_003130395.1|	-	5e-14	52.1	0.0	1.2e-13	50.9	0.0	1.7	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
HHH_2	PF12826.2	gi|257052562|ref|YP_003130395.1|	-	1.9e-11	43.6	0.3	6.4e-11	41.9	0.1	2.0	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
HHH_5	PF14520.1	gi|257052562|ref|YP_003130395.1|	-	3.4e-11	43.1	0.2	4e-10	39.7	0.0	2.7	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
ResIII	PF04851.10	gi|257052562|ref|YP_003130395.1|	-	7.4e-09	35.6	0.0	2.1e-08	34.2	0.0	1.8	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
HHH	PF00633.18	gi|257052562|ref|YP_003130395.1|	-	1.1e-07	31.1	0.1	4.2e-06	26.1	0.0	2.9	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
DUF4404	PF14357.1	gi|257052562|ref|YP_003130395.1|	-	0.019	15.3	0.3	0.019	15.3	0.2	3.6	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4404)
RuvB_N	PF05496.7	gi|257052562|ref|YP_003130395.1|	-	0.019	13.9	0.0	0.04	12.9	0.0	1.4	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	ruvB	N-terminus
Helicase_C_2	PF13307.1	gi|257052562|ref|YP_003130395.1|	-	0.12	12.3	0.0	0.32	10.9	0.0	1.7	1	0	0	1	1	1	0	Helicase	C-terminal	domain
tRNA-synt_2b	PF00587.20	gi|257052564|ref|YP_003130397.1|	-	3.6e-52	176.4	0.0	5.1e-52	175.9	0.0	1.2	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
HGTP_anticodon	PF03129.15	gi|257052564|ref|YP_003130397.1|	-	1.2e-22	79.6	0.0	4.2e-22	77.8	0.0	1.9	2	0	0	2	2	2	1	Anticodon	binding	domain
zf-ribbon_3	PF13248.1	gi|257052564|ref|YP_003130397.1|	-	0.015	14.4	3.7	0.21	10.8	2.5	2.4	1	1	1	2	2	2	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|257052564|ref|YP_003130397.1|	-	0.024	14.5	0.2	2.7	8.0	0.0	2.4	2	0	0	2	2	2	0	Zinc	ribbon	domain
zinc_ribbon_2	PF13240.1	gi|257052564|ref|YP_003130397.1|	-	0.26	10.8	2.7	5	6.7	0.4	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF348	PF03990.9	gi|257052564|ref|YP_003130397.1|	-	3.2	7.3	6.1	8.9	5.9	0.3	3.4	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF348)
CBS	PF00571.23	gi|257052565|ref|YP_003130398.1|	-	1.3e-34	117.7	13.9	1.4e-10	40.8	0.2	4.1	4	0	0	4	4	4	4	CBS	domain
2-Hacid_dh_C	PF02826.14	gi|257052567|ref|YP_003130400.1|	-	7.2e-35	119.7	0.0	1.2e-34	118.9	0.0	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.25	gi|257052567|ref|YP_003130400.1|	-	3.2e-21	75.1	0.9	5.2e-21	74.5	0.6	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
ACT	PF01842.20	gi|257052567|ref|YP_003130400.1|	-	0.00014	21.2	3.8	0.0044	16.4	0.0	3.8	3	0	0	3	3	3	1	ACT	domain
NAD_binding_7	PF13241.1	gi|257052567|ref|YP_003130400.1|	-	0.037	14.2	0.0	0.096	12.9	0.0	1.8	1	0	0	1	1	1	0	Putative	NAD(P)-binding
Glyco_trans_4_4	PF13579.1	gi|257052567|ref|YP_003130400.1|	-	0.46	10.5	3.7	6	6.9	0.0	2.7	3	0	0	3	3	3	0	Glycosyl	transferase	4-like	domain
PALP	PF00291.20	gi|257052569|ref|YP_003130402.1|	-	1.1e-65	221.9	1.1	1.3e-65	221.6	0.8	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Antitoxin-MazE	PF04014.13	gi|257052570|ref|YP_003130403.1|	-	1.3e-09	37.5	0.1	1.8e-09	37.0	0.0	1.2	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
PIN	PF01850.16	gi|257052571|ref|YP_003130404.1|	-	9.4e-18	64.6	3.0	1.1e-17	64.5	2.1	1.0	1	0	0	1	1	1	1	PIN	domain
PIN_3	PF13470.1	gi|257052571|ref|YP_003130404.1|	-	1.7e-06	28.6	0.2	2e-06	28.4	0.1	1.2	1	0	0	1	1	1	1	PIN	domain
OTCace_N	PF02729.16	gi|257052572|ref|YP_003130405.1|	-	2.4e-48	163.3	0.0	4.2e-48	162.6	0.0	1.4	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	carbamoyl-P	binding	domain
OTCace	PF00185.19	gi|257052572|ref|YP_003130405.1|	-	1.7e-46	157.9	0.0	6.2e-46	156.1	0.0	1.8	2	0	0	2	2	2	1	Aspartate/ornithine	carbamoyltransferase,	Asp/Orn	binding	domain
Glyco_hydro_4	PF02056.11	gi|257052572|ref|YP_003130405.1|	-	0.11	11.7	0.0	0.33	10.2	0.0	1.8	1	1	0	1	1	1	0	Family	4	glycosyl	hydrolase
Peptidase_M20	PF01546.23	gi|257052573|ref|YP_003130406.1|	-	2e-24	86.1	0.1	3e-24	85.5	0.1	1.3	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.9	gi|257052573|ref|YP_003130406.1|	-	8.1e-08	31.9	0.0	1.7e-07	30.9	0.0	1.6	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
Aminotran_3	PF00202.16	gi|257052574|ref|YP_003130407.1|	-	4e-96	321.8	0.2	4.7e-96	321.5	0.1	1.1	1	0	0	1	1	1	1	Aminotransferase	class-III
Beta_elim_lyase	PF01212.16	gi|257052574|ref|YP_003130407.1|	-	0.04	13.0	0.0	0.066	12.3	0.0	1.3	1	0	0	1	1	1	0	Beta-eliminating	lyase
AA_kinase	PF00696.23	gi|257052575|ref|YP_003130408.1|	-	2.3e-30	105.8	0.5	2.7e-30	105.6	0.3	1.0	1	0	0	1	1	1	1	Amino	acid	kinase	family
Semialdhyde_dh	PF01118.19	gi|257052576|ref|YP_003130409.1|	-	6.9e-30	103.8	0.0	1.3e-29	102.9	0.0	1.5	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
Semialdhyde_dhC	PF02774.13	gi|257052576|ref|YP_003130409.1|	-	2.7e-07	30.6	0.0	5.1e-07	29.7	0.0	1.5	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	dimerisation	domain
DapB_N	PF01113.15	gi|257052576|ref|YP_003130409.1|	-	0.0016	18.3	0.0	0.0042	17.0	0.0	1.6	1	1	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
NAD_binding_10	PF13460.1	gi|257052576|ref|YP_003130409.1|	-	0.02	14.9	0.0	0.24	11.3	0.0	2.2	2	0	0	2	2	2	0	NADH(P)-binding
RimK	PF08443.6	gi|257052577|ref|YP_003130410.1|	-	4.3e-38	130.7	0.0	6.2e-38	130.1	0.0	1.2	1	0	0	1	1	1	1	RimK-like	ATP-grasp	domain
ATP-grasp_4	PF13535.1	gi|257052577|ref|YP_003130410.1|	-	1.3e-17	64.1	0.0	1.7e-17	63.7	0.0	1.2	1	0	0	1	1	1	1	ATP-grasp	domain
GSH-S_ATP	PF02955.11	gi|257052577|ref|YP_003130410.1|	-	6.7e-10	38.3	0.0	9.9e-10	37.8	0.0	1.2	1	0	0	1	1	1	1	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
ATP-grasp_3	PF02655.9	gi|257052577|ref|YP_003130410.1|	-	2.7e-08	33.8	0.0	3.8e-08	33.3	0.0	1.2	1	0	0	1	1	1	1	ATP-grasp	domain
ATPgrasp_Ter	PF15632.1	gi|257052577|ref|YP_003130410.1|	-	3.4e-07	29.3	0.0	4.4e-07	28.9	0.0	1.2	1	0	0	1	1	1	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
CPSase_L_D2	PF02786.12	gi|257052577|ref|YP_003130410.1|	-	5.8e-06	25.7	0.0	9.5e-06	25.0	0.0	1.3	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATP-grasp_5	PF13549.1	gi|257052577|ref|YP_003130410.1|	-	2.2e-05	23.7	0.1	0.001	18.3	0.0	2.8	1	1	1	2	2	2	1	ATP-grasp	domain
ATP-grasp	PF02222.17	gi|257052577|ref|YP_003130410.1|	-	0.0002	20.7	0.0	0.0011	18.3	0.0	2.2	2	1	0	2	2	2	1	ATP-grasp	domain
Lyase_1	PF00206.15	gi|257052579|ref|YP_003130412.1|	-	1.3e-53	182.2	1.9	1.5e-53	182.0	0.1	1.8	2	0	0	2	2	2	1	Lyase
ASL_C2	PF14698.1	gi|257052579|ref|YP_003130412.1|	-	5.1e-12	45.6	2.6	2.2e-11	43.6	1.8	2.2	1	0	0	1	1	1	1	Argininosuccinate	lyase	C-terminal
Arginosuc_synth	PF00764.14	gi|257052580|ref|YP_003130413.1|	-	3.2e-143	477.4	0.0	3.7e-143	477.2	0.0	1.0	1	0	0	1	1	1	1	Arginosuccinate	synthase
Asn_synthase	PF00733.16	gi|257052580|ref|YP_003130413.1|	-	1.6e-05	24.5	0.0	2.6e-05	23.8	0.0	1.3	1	0	0	1	1	1	1	Asparagine	synthase
QueC	PF06508.8	gi|257052580|ref|YP_003130413.1|	-	0.00026	20.3	0.0	0.00046	19.5	0.0	1.4	1	0	0	1	1	1	1	Queuosine	biosynthesis	protein	QueC
NAD_synthase	PF02540.12	gi|257052580|ref|YP_003130413.1|	-	0.0022	16.9	0.0	0.0027	16.6	0.0	1.2	1	0	0	1	1	1	1	NAD	synthase
tRNA_Me_trans	PF03054.11	gi|257052580|ref|YP_003130413.1|	-	0.016	13.7	0.0	0.027	13.0	0.0	1.3	1	0	0	1	1	1	0	tRNA	methyl	transferase
Rib	PF08428.5	gi|257052580|ref|YP_003130413.1|	-	0.11	12.2	0.7	0.34	10.6	0.0	2.1	2	0	0	2	2	2	0	Rib/alpha-like	repeat
MerT	PF02411.10	gi|257052581|ref|YP_003130414.1|	-	1.1	9.0	5.1	1.3	8.8	3.5	1.1	1	0	0	1	1	1	0	MerT	mercuric	transport	protein
DUF4282	PF14110.1	gi|257052581|ref|YP_003130414.1|	-	7.2	6.8	9.5	9.3	6.5	6.6	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4282)
MS_channel	PF00924.13	gi|257052581|ref|YP_003130414.1|	-	8.7	5.6	7.7	4.9	6.4	4.3	1.4	1	1	0	1	1	1	0	Mechanosensitive	ion	channel
2_5_RNA_ligase2	PF13563.1	gi|257052582|ref|YP_003130415.1|	-	7.9e-16	58.1	0.0	1.5e-15	57.2	0.0	1.5	1	1	0	1	1	1	1	2'-5'	RNA	ligase	superfamily
LigT_PEase	PF02834.11	gi|257052582|ref|YP_003130415.1|	-	1.8e-09	37.4	0.1	0.0023	17.8	0.0	2.7	2	1	0	2	2	2	2	LigT	like	Phosphoesterase
AKAP7_NLS	PF10469.4	gi|257052582|ref|YP_003130415.1|	-	5.3e-06	26.2	0.0	6.7e-06	25.9	0.0	1.1	1	0	0	1	1	1	1	AKAP7	2'5'	RNA	ligase-like	domain
CBS	PF00571.23	gi|257052583|ref|YP_003130416.1|	-	4.9e-29	99.8	4.9	3.9e-14	52.1	0.2	2.4	2	0	0	2	2	2	2	CBS	domain
Peptidase_M50	PF02163.17	gi|257052583|ref|YP_003130416.1|	-	6.7e-20	70.8	12.9	8.2e-15	54.2	4.3	2.5	1	1	1	2	2	2	2	Peptidase	family	M50
Acetyltransf_10	PF13673.1	gi|257052583|ref|YP_003130416.1|	-	0.089	12.9	0.0	1.3	9.1	0.0	2.6	2	1	1	3	3	3	0	Acetyltransferase	(GNAT)	domain
Ham1p_like	PF01725.11	gi|257052585|ref|YP_003130418.1|	-	6.8e-45	152.7	0.0	8e-45	152.5	0.0	1.1	1	0	0	1	1	1	1	Ham1	family
HATPase_c	PF02518.21	gi|257052586|ref|YP_003130419.1|	-	2.4e-15	56.2	0.0	4.2e-15	55.4	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_4	PF08448.5	gi|257052586|ref|YP_003130419.1|	-	5.6e-15	55.3	0.0	1.6e-14	53.8	0.0	1.8	1	0	0	1	1	1	1	PAS	fold
Response_reg	PF00072.19	gi|257052586|ref|YP_003130419.1|	-	3.3e-14	52.8	0.1	1.5e-13	50.7	0.0	2.1	2	0	0	2	2	2	1	Response	regulator	receiver	domain
HisKA	PF00512.20	gi|257052586|ref|YP_003130419.1|	-	1.3e-12	47.5	1.1	1.3e-12	47.5	0.8	2.7	3	0	0	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
OKR_DC_1_N	PF03709.10	gi|257052586|ref|YP_003130419.1|	-	0.025	14.6	0.0	0.22	11.6	0.0	2.3	2	0	0	2	2	2	0	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
Nitroreductase	PF00881.19	gi|257052586|ref|YP_003130419.1|	-	0.027	14.3	0.1	3.3	7.5	0.0	2.3	2	0	0	2	2	2	0	Nitroreductase	family
TBCA	PF02970.11	gi|257052586|ref|YP_003130419.1|	-	0.028	14.4	2.2	0.047	13.7	0.0	2.4	3	0	0	3	3	3	0	Tubulin	binding	cofactor	A
HATPase_c_3	PF13589.1	gi|257052586|ref|YP_003130419.1|	-	0.038	13.6	0.0	0.078	12.6	0.0	1.6	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
DivIVA	PF05103.8	gi|257052586|ref|YP_003130419.1|	-	0.35	10.9	0.1	0.35	10.9	0.0	2.2	3	0	0	3	3	3	0	DivIVA	protein
DUF165	PF02592.10	gi|257052587|ref|YP_003130420.1|	-	0.0048	17.0	2.3	0.0055	16.8	1.6	1.2	1	0	0	1	1	1	1	Uncharacterized	ACR,	YhhQ	family	COG1738
DUF2127	PF09900.4	gi|257052587|ref|YP_003130420.1|	-	0.16	11.9	4.9	0.4	10.7	0.7	2.2	1	1	0	2	2	2	0	Predicted	membrane	protein	(DUF2127)
ABC2_membrane_3	PF12698.2	gi|257052587|ref|YP_003130420.1|	-	0.52	9.2	9.7	0.55	9.1	6.7	1.1	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
UPF0182	PF03699.8	gi|257052587|ref|YP_003130420.1|	-	0.58	8.0	2.5	0.72	7.7	1.8	1.0	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0182)
DUF1772	PF08592.6	gi|257052587|ref|YP_003130420.1|	-	0.99	9.1	6.7	1.2	8.8	1.2	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF1772)
AdoHcyase	PF05221.12	gi|257052588|ref|YP_003130421.1|	-	2.2e-50	171.0	0.0	2.8e-50	170.7	0.0	1.1	1	0	0	1	1	1	1	S-adenosyl-L-homocysteine	hydrolase
AdoHcyase_NAD	PF00670.16	gi|257052588|ref|YP_003130421.1|	-	7.8e-48	162.3	2.0	1.5e-47	161.4	0.3	2.0	2	0	0	2	2	2	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.14	gi|257052588|ref|YP_003130421.1|	-	8.1e-12	44.6	0.2	1.5e-11	43.7	0.2	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.7	gi|257052588|ref|YP_003130421.1|	-	1.8e-07	30.7	0.2	4.8e-07	29.2	0.1	1.8	2	0	0	2	2	2	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
ELFV_dehydrog	PF00208.16	gi|257052588|ref|YP_003130421.1|	-	0.0083	15.7	0.1	0.015	14.8	0.1	1.4	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
AlaDh_PNT_C	PF01262.16	gi|257052588|ref|YP_003130421.1|	-	0.013	15.0	1.2	0.055	13.0	0.7	2.0	1	1	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
NIF3	PF01784.13	gi|257052588|ref|YP_003130421.1|	-	0.057	12.9	0.1	1.2	8.6	0.0	2.5	2	1	0	2	2	2	0	NIF3	(NGG1p	interacting	factor	3)
DUF3921	PF13060.1	gi|257052588|ref|YP_003130421.1|	-	0.087	12.7	0.1	0.33	10.8	0.0	2.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3921)
DUF1510	PF07423.6	gi|257052589|ref|YP_003130422.1|	-	0.00029	20.2	33.4	0.00029	20.2	23.2	2.3	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1510)
MG1	PF11974.3	gi|257052589|ref|YP_003130422.1|	-	0.055	14.0	1.5	1.8	9.2	0.1	2.4	2	0	0	2	2	2	0	Alpha-2-macroglobulin	MG1	domain
SprA-related	PF12118.3	gi|257052589|ref|YP_003130422.1|	-	0.15	11.3	38.6	0.54	9.5	1.8	2.2	2	0	0	2	2	2	0	SprA-related	family
Nop14	PF04147.7	gi|257052589|ref|YP_003130422.1|	-	1.4	6.7	83.6	0.13	10.1	33.5	2.1	2	0	0	2	2	2	0	Nop14-like	family
DUF262	PF03235.9	gi|257052589|ref|YP_003130422.1|	-	1.4	8.8	11.5	0.032	14.1	2.7	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	DUF262
SPX	PF03105.14	gi|257052589|ref|YP_003130422.1|	-	2.9	7.6	26.1	0.039	13.7	6.8	2.1	2	0	0	2	2	2	0	SPX	domain
Pilt	PF15453.1	gi|257052589|ref|YP_003130422.1|	-	4	7.0	30.5	1.4	8.5	13.9	2.2	2	0	0	2	2	2	0	Protein	incorporated	later	into	Tight	Junctions
DUF4045	PF13254.1	gi|257052589|ref|YP_003130422.1|	-	8	5.6	28.7	0.78	8.9	12.3	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4045)
Utp14	PF04615.8	gi|257052589|ref|YP_003130422.1|	-	9	4.3	50.0	0.11	10.6	21.4	2.0	2	0	0	2	2	2	0	Utp14	protein
Amidohydro_1	PF01979.15	gi|257052590|ref|YP_003130423.1|	-	2.3e-48	165.5	4.4	3e-48	165.2	3.1	1.1	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_4	PF13147.1	gi|257052590|ref|YP_003130423.1|	-	1.9e-13	51.1	15.7	5.6e-13	49.5	10.9	1.9	1	1	0	1	1	1	1	Amidohydrolase
Amidohydro_5	PF13594.1	gi|257052590|ref|YP_003130423.1|	-	1.1e-08	34.7	0.1	4.2e-08	32.8	0.1	2.1	1	0	0	1	1	1	1	Amidohydrolase
Amidohydro_3	PF07969.6	gi|257052590|ref|YP_003130423.1|	-	2.4e-08	33.6	18.7	5.7e-08	32.3	6.4	3.1	2	1	0	3	3	3	2	Amidohydrolase	family
A_deaminase	PF00962.17	gi|257052590|ref|YP_003130423.1|	-	4.2e-05	22.6	0.0	9.2e-05	21.5	0.0	1.5	1	0	0	1	1	1	1	Adenosine/AMP	deaminase
TatD_DNase	PF01026.16	gi|257052590|ref|YP_003130423.1|	-	0.043	13.0	0.1	0.092	11.9	0.0	1.6	1	1	0	1	1	1	0	TatD	related	DNase
HTH_23	PF13384.1	gi|257052591|ref|YP_003130424.1|	-	6e-05	22.5	0.1	0.00013	21.4	0.0	1.5	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_29	PF13551.1	gi|257052591|ref|YP_003130424.1|	-	0.001	19.2	0.0	0.002	18.2	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn	helix
TrmB	PF01978.14	gi|257052591|ref|YP_003130424.1|	-	0.001	18.6	0.0	0.0021	17.7	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_28	PF13518.1	gi|257052591|ref|YP_003130424.1|	-	0.0017	18.3	0.1	0.0067	16.4	0.0	2.0	2	0	0	2	2	2	1	Helix-turn-helix	domain
Rrf2	PF02082.15	gi|257052591|ref|YP_003130424.1|	-	0.012	15.7	0.0	1	9.5	0.0	2.4	2	0	0	2	2	2	0	Transcriptional	regulator
MarR_2	PF12802.2	gi|257052591|ref|YP_003130424.1|	-	0.025	14.2	0.1	0.056	13.1	0.0	1.6	1	1	0	1	1	1	0	MarR	family
HTH_1	PF00126.22	gi|257052591|ref|YP_003130424.1|	-	0.049	13.3	0.9	0.13	12.0	0.1	1.9	2	0	0	2	2	2	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
DUF2250	PF10007.4	gi|257052591|ref|YP_003130424.1|	-	0.1	12.5	0.0	0.2	11.5	0.0	1.5	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
DUF1871	PF08958.5	gi|257052591|ref|YP_003130424.1|	-	0.1	12.7	0.0	0.2	11.7	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1871)
Fe_dep_repress	PF01325.14	gi|257052591|ref|YP_003130424.1|	-	0.14	12.0	0.0	0.57	10.1	0.0	2.0	2	0	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
NTP_transf_5	PF14907.1	gi|257052592|ref|YP_003130425.1|	-	3.5e-08	33.0	0.0	8.2e-08	31.8	0.0	1.7	2	0	0	2	2	2	1	Uncharacterised	nucleotidyltransferase
DUF1814	PF08843.6	gi|257052592|ref|YP_003130425.1|	-	3.6e-06	26.9	0.1	4.9e-06	26.5	0.1	1.4	1	1	0	1	1	1	1	Nucleotidyl	transferase	of	unknown	function	(DUF1814)
Propep_M14	PF02244.11	gi|257052592|ref|YP_003130425.1|	-	0.12	12.0	0.0	0.27	10.9	0.0	1.6	1	1	0	1	1	1	0	Carboxypeptidase	activation	peptide
RHH_1	PF01402.16	gi|257052593|ref|YP_003130426.1|	-	1e-05	25.1	0.3	1.3e-05	24.8	0.2	1.2	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
RF-1	PF00472.15	gi|257052593|ref|YP_003130426.1|	-	0.058	13.1	0.0	0.058	13.1	0.0	1.0	1	0	0	1	1	1	0	RF-1	domain
ParG	PF09274.5	gi|257052593|ref|YP_003130426.1|	-	0.084	12.8	0.7	0.16	11.9	0.5	1.6	1	1	0	1	1	1	0	ParG
NTR2	PF15458.1	gi|257052593|ref|YP_003130426.1|	-	0.25	10.5	3.2	0.24	10.6	2.2	1.0	1	0	0	1	1	1	0	Nineteen	complex-related	protein	2
HATPase_c	PF02518.21	gi|257052594|ref|YP_003130427.1|	-	2.9e-19	68.8	0.1	4.8e-19	68.1	0.1	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.20	gi|257052594|ref|YP_003130427.1|	-	6.1e-11	42.1	2.4	6.1e-11	42.1	1.6	2.6	2	1	1	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_4	PF08448.5	gi|257052594|ref|YP_003130427.1|	-	5.2e-05	23.2	0.1	0.00015	21.7	0.1	1.9	1	0	0	1	1	1	1	PAS	fold
PAS_8	PF13188.1	gi|257052594|ref|YP_003130427.1|	-	0.0019	18.0	0.2	0.013	15.3	0.1	2.6	2	0	0	2	2	2	1	PAS	domain
HATPase_c_3	PF13589.1	gi|257052594|ref|YP_003130427.1|	-	0.0027	17.3	0.0	0.0051	16.4	0.0	1.3	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_10	PF13596.1	gi|257052594|ref|YP_003130427.1|	-	0.019	15.2	0.0	0.044	14.0	0.0	1.6	1	0	0	1	1	1	0	PAS	domain
PAS_9	PF13426.1	gi|257052594|ref|YP_003130427.1|	-	0.023	15.0	0.0	0.12	12.7	0.0	2.2	2	1	0	2	2	2	0	PAS	domain
PAS	PF00989.19	gi|257052594|ref|YP_003130427.1|	-	0.027	14.2	0.0	0.15	11.8	0.0	2.2	2	0	0	2	2	2	0	PAS	fold
PSD2	PF07624.6	gi|257052594|ref|YP_003130427.1|	-	0.1	12.2	0.2	1.2	8.8	0.0	2.5	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1585)
HisG	PF01634.13	gi|257052595|ref|YP_003130428.1|	-	2.2e-48	163.8	0.1	3.4e-48	163.3	0.1	1.2	1	0	0	1	1	1	1	ATP	phosphoribosyltransferase
HisG_C	PF08029.6	gi|257052595|ref|YP_003130428.1|	-	2.7e-26	91.3	0.1	4.6e-26	90.5	0.1	1.4	1	0	0	1	1	1	1	HisG,	C-terminal	domain
NMT1	PF09084.6	gi|257052595|ref|YP_003130428.1|	-	0.0016	18.0	0.0	0.0044	16.6	0.0	1.6	1	1	0	1	1	1	1	NMT1/THI5	like
Phosphonate-bd	PF12974.2	gi|257052595|ref|YP_003130428.1|	-	0.0037	16.6	0.2	0.0063	15.9	0.1	1.5	1	1	0	1	1	1	1	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
Reticulon	PF02453.12	gi|257052596|ref|YP_003130429.1|	-	0.053	13.1	1.5	0.061	12.9	1.0	1.1	1	0	0	1	1	1	0	Reticulon
DUF2933	PF11666.3	gi|257052596|ref|YP_003130429.1|	-	0.21	11.1	1.6	0.37	10.3	1.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2933)
DUF3180	PF11377.3	gi|257052596|ref|YP_003130429.1|	-	0.55	10.0	10.2	5.1	6.9	7.1	2.0	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3180)
DUF3040	PF11239.3	gi|257052596|ref|YP_003130429.1|	-	1.1	9.3	8.3	1.1	9.3	5.2	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3040)
TrkA_C	PF02080.16	gi|257052597|ref|YP_003130430.1|	-	2.1e-31	107.3	1.0	2.3e-17	62.3	0.0	3.0	2	1	1	3	3	3	2	TrkA-C	domain
PhoU	PF01895.14	gi|257052597|ref|YP_003130430.1|	-	2.7e-15	56.5	5.8	5.2e-08	33.2	0.9	2.5	2	0	0	2	2	2	2	PhoU	domain
PhoU_div	PF01865.11	gi|257052597|ref|YP_003130430.1|	-	0.0022	17.1	1.5	0.69	9.0	0.1	2.2	2	0	0	2	2	2	2	Protein	of	unknown	function	DUF47
Citrate_synt	PF00285.16	gi|257052598|ref|YP_003130431.1|	-	1.7e-131	438.1	0.1	2e-131	437.9	0.1	1.0	1	0	0	1	1	1	1	Citrate	synthase
Usp	PF00582.21	gi|257052599|ref|YP_003130432.1|	-	1.1e-22	80.7	3.1	1.2e-22	80.5	2.1	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
Aldo_ket_red	PF00248.16	gi|257052600|ref|YP_003130433.1|	-	1.6e-64	217.4	0.0	2.1e-64	217.0	0.0	1.2	1	0	0	1	1	1	1	Aldo/keto	reductase	family
Seadorna_VP6	PF07407.6	gi|257052600|ref|YP_003130433.1|	-	0.14	10.8	0.0	0.18	10.5	0.0	1.2	1	0	0	1	1	1	0	Seadornavirus	VP6	protein
PALP	PF00291.20	gi|257052601|ref|YP_003130434.1|	-	4.1e-77	259.4	10.9	4.9e-77	259.1	7.6	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
ACT_4	PF13291.1	gi|257052601|ref|YP_003130434.1|	-	8e-05	22.9	0.0	0.00028	21.1	0.0	1.9	1	0	0	1	1	1	1	ACT	domain
ACT	PF01842.20	gi|257052601|ref|YP_003130434.1|	-	0.0033	16.8	0.2	0.011	15.2	0.2	2.0	1	0	0	1	1	1	1	ACT	domain
PT	PF04886.7	gi|257052602|ref|YP_003130435.1|	-	0.0064	15.7	25.7	0.017	14.4	17.8	1.7	1	1	0	1	1	1	1	PT	repeat
TAT_signal	PF10518.4	gi|257052602|ref|YP_003130435.1|	-	0.26	11.3	2.0	0.48	10.5	1.4	1.4	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
SWIM	PF04434.12	gi|257052603|ref|YP_003130436.1|	-	0.0029	17.0	3.2	0.025	14.0	2.2	2.1	1	1	0	1	1	1	1	SWIM	zinc	finger
TRM	PF02005.11	gi|257052604|ref|YP_003130437.1|	-	2.9e-92	309.5	0.0	3.6e-92	309.2	0.0	1.0	1	0	0	1	1	1	1	N2,N2-dimethylguanosine	tRNA	methyltransferase
MTS	PF05175.9	gi|257052604|ref|YP_003130437.1|	-	3.6e-07	29.6	0.2	1.2e-06	27.9	0.1	1.9	2	1	0	2	2	2	1	Methyltransferase	small	domain
Methyltransf_31	PF13847.1	gi|257052604|ref|YP_003130437.1|	-	0.00015	21.3	0.0	0.00026	20.6	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|257052604|ref|YP_003130437.1|	-	0.0028	17.6	4.7	0.0044	17.0	2.2	2.3	2	1	0	2	2	2	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|257052604|ref|YP_003130437.1|	-	0.031	14.8	0.1	0.078	13.5	0.1	1.7	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|257052604|ref|YP_003130437.1|	-	0.036	14.4	0.1	0.12	12.7	0.0	1.9	2	0	0	2	2	2	0	Methyltransferase	domain
Zn-ribbon_8	PF09723.5	gi|257052604|ref|YP_003130437.1|	-	0.059	13.3	1.1	0.14	12.1	0.7	1.7	1	0	0	1	1	1	0	Zinc	ribbon	domain
PrmA	PF06325.8	gi|257052604|ref|YP_003130437.1|	-	0.12	11.5	0.2	0.17	10.9	0.2	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
zinc_ribbon_2	PF13240.1	gi|257052604|ref|YP_003130437.1|	-	2.3	7.8	7.4	0.32	10.5	0.6	2.6	3	0	0	3	3	3	0	zinc-ribbon	domain
MrpF_PhaF	PF04066.8	gi|257052605|ref|YP_003130438.1|	-	0.093	13.0	5.4	0.34	11.2	0.7	2.5	2	0	0	2	2	2	0	Multiple	resistance	and	pH	regulation	protein	F	(MrpF	/	PhaF)
HTH_20	PF12840.2	gi|257052606|ref|YP_003130439.1|	-	1.9e-09	37.1	0.1	2.9e-09	36.6	0.1	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|257052606|ref|YP_003130439.1|	-	4.9e-07	29.3	0.0	7.4e-07	28.7	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.14	gi|257052606|ref|YP_003130439.1|	-	0.00011	21.7	0.0	0.00016	21.2	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_23	PF13384.1	gi|257052606|ref|YP_003130439.1|	-	0.0057	16.2	0.0	0.011	15.4	0.0	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_30	PF13556.1	gi|257052606|ref|YP_003130439.1|	-	0.012	15.2	0.0	0.02	14.4	0.0	1.3	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
HTH_24	PF13412.1	gi|257052606|ref|YP_003130439.1|	-	0.015	14.6	0.0	0.03	13.7	0.0	1.5	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
GntR	PF00392.16	gi|257052606|ref|YP_003130439.1|	-	0.016	14.6	0.0	0.029	13.7	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_IclR	PF09339.5	gi|257052606|ref|YP_003130439.1|	-	0.024	14.2	0.0	0.037	13.6	0.0	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_11	PF08279.7	gi|257052606|ref|YP_003130439.1|	-	0.038	13.6	0.0	0.061	12.9	0.0	1.3	1	0	0	1	1	1	0	HTH	domain
Phage_rep_org_N	PF09681.5	gi|257052606|ref|YP_003130439.1|	-	0.041	13.4	0.0	0.046	13.2	0.0	1.2	1	0	0	1	1	1	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
HTH_29	PF13551.1	gi|257052606|ref|YP_003130439.1|	-	0.09	12.9	0.0	0.21	11.7	0.0	1.6	1	1	1	2	2	2	0	Winged	helix-turn	helix
HTH_45	PF14947.1	gi|257052606|ref|YP_003130439.1|	-	0.092	12.5	0.0	0.12	12.2	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix
Oxidored_molyb	PF00174.14	gi|257052607|ref|YP_003130440.1|	-	8.2e-38	129.4	0.0	1.2e-37	128.9	0.0	1.2	1	0	0	1	1	1	1	Oxidoreductase	molybdopterin	binding	domain
Mo-co_dimer	PF03404.11	gi|257052607|ref|YP_003130440.1|	-	1.2e-14	54.0	0.3	2.7e-14	52.9	0.2	1.5	1	0	0	1	1	1	1	Mo-co	oxidoreductase	dimerisation	domain
PG_binding_3	PF09374.5	gi|257052608|ref|YP_003130441.1|	-	0.01	15.8	7.4	3.4	7.7	0.5	4.1	1	1	1	2	2	2	0	Predicted	Peptidoglycan	domain
FLO_LFY	PF01698.11	gi|257052608|ref|YP_003130441.1|	-	6.2	5.5	6.7	6.8	5.4	4.7	1.0	1	0	0	1	1	1	0	Floricaula	/	Leafy	protein
SseC	PF04888.7	gi|257052609|ref|YP_003130442.1|	-	0.18	11.1	3.7	0.21	10.8	2.6	1.1	1	0	0	1	1	1	0	Secretion	system	effector	C	(SseC)	like	family
EamA	PF00892.15	gi|257052609|ref|YP_003130442.1|	-	0.3	11.1	5.8	0.46	10.5	4.0	1.2	1	0	0	1	1	1	0	EamA-like	transporter	family
DUF4112	PF13430.1	gi|257052609|ref|YP_003130442.1|	-	2.3	8.1	4.4	2.2	8.2	2.6	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4112)
Virul_fac_BrkB	PF03631.10	gi|257052610|ref|YP_003130443.1|	-	9.7e-44	149.6	27.0	9.7e-44	149.6	18.7	2.0	2	0	0	2	2	2	1	Virulence	factor	BrkB
DUF1192	PF06698.6	gi|257052610|ref|YP_003130443.1|	-	0.0093	15.7	3.1	0.021	14.6	2.1	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1192)
Pup	PF05639.6	gi|257052610|ref|YP_003130443.1|	-	0.11	13.0	1.5	0.23	11.9	1.0	1.5	1	0	0	1	1	1	0	Pup-like	protein
DivIC	PF04977.10	gi|257052610|ref|YP_003130443.1|	-	0.11	11.9	0.2	0.28	10.7	0.2	1.6	1	0	0	1	1	1	0	Septum	formation	initiator
DUF812	PF05667.6	gi|257052610|ref|YP_003130443.1|	-	0.24	9.8	0.1	0.31	9.4	0.1	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF812)
PAP2	PF01569.16	gi|257052611|ref|YP_003130444.1|	-	3.4e-17	62.3	7.3	4.8e-17	61.8	2.9	2.4	2	0	0	2	2	2	1	PAP2	superfamily
Gln-synt_C	PF00120.19	gi|257052612|ref|YP_003130445.1|	-	5.7e-104	346.8	0.0	1e-103	346.0	0.0	1.4	2	0	0	2	2	2	1	Glutamine	synthetase,	catalytic	domain
Gln-synt_N	PF03951.14	gi|257052612|ref|YP_003130445.1|	-	1.4e-28	98.2	1.5	1.9e-28	97.8	0.1	1.9	2	0	0	2	2	2	1	Glutamine	synthetase,	beta-Grasp	domain
AsnC_trans_reg	PF01037.16	gi|257052613|ref|YP_003130446.1|	-	8.2e-13	47.8	0.1	1.4e-12	47.0	0.0	1.4	1	0	0	1	1	1	1	AsnC	family
HTH_24	PF13412.1	gi|257052613|ref|YP_003130446.1|	-	2e-12	46.2	0.2	3.7e-12	45.4	0.1	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.15	gi|257052613|ref|YP_003130446.1|	-	1.3e-08	34.3	0.1	2.5e-08	33.4	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_AsnC-type	PF13404.1	gi|257052613|ref|YP_003130446.1|	-	1.4e-08	34.1	0.5	2.2e-08	33.4	0.3	1.3	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_20	PF12840.2	gi|257052613|ref|YP_003130446.1|	-	5.4e-08	32.5	0.0	1e-07	31.5	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.7	gi|257052613|ref|YP_003130446.1|	-	1.2e-06	28.0	0.0	2.7e-06	26.9	0.0	1.5	1	0	0	1	1	1	1	HTH	domain
HTH_IclR	PF09339.5	gi|257052613|ref|YP_003130446.1|	-	3.1e-05	23.4	0.0	5.3e-05	22.7	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_DeoR	PF08220.7	gi|257052613|ref|YP_003130446.1|	-	8.5e-05	22.0	0.3	0.00021	20.7	0.1	1.7	2	0	0	2	2	2	1	DeoR-like	helix-turn-helix	domain
TrmB	PF01978.14	gi|257052613|ref|YP_003130446.1|	-	0.00023	20.7	0.0	0.00048	19.7	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_28	PF13518.1	gi|257052613|ref|YP_003130446.1|	-	0.00037	20.4	0.0	0.00079	19.3	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
GntR	PF00392.16	gi|257052613|ref|YP_003130446.1|	-	0.00039	19.7	0.2	0.00098	18.5	0.0	1.7	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
MarR	PF01047.17	gi|257052613|ref|YP_003130446.1|	-	0.00058	19.5	0.0	0.0011	18.6	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_23	PF13384.1	gi|257052613|ref|YP_003130446.1|	-	0.0011	18.5	0.0	0.0019	17.7	0.0	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_38	PF13936.1	gi|257052613|ref|YP_003130446.1|	-	0.0011	18.4	0.0	0.002	17.6	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_36	PF13730.1	gi|257052613|ref|YP_003130446.1|	-	0.0017	18.4	0.0	0.0028	17.7	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_34	PF13601.1	gi|257052613|ref|YP_003130446.1|	-	0.003	17.5	0.0	0.0055	16.7	0.0	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_10	PF04967.7	gi|257052613|ref|YP_003130446.1|	-	0.0037	16.7	0.0	0.0095	15.4	0.0	1.6	1	0	0	1	1	1	1	HTH	DNA	binding	domain
MarR_2	PF12802.2	gi|257052613|ref|YP_003130446.1|	-	0.0075	15.9	0.0	0.013	15.1	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_Crp_2	PF13545.1	gi|257052613|ref|YP_003130446.1|	-	0.0098	15.6	0.0	0.015	15.0	0.0	1.4	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_41	PF14502.1	gi|257052613|ref|YP_003130446.1|	-	0.026	14.1	0.0	0.058	13.0	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
Fe_dep_repress	PF01325.14	gi|257052613|ref|YP_003130446.1|	-	0.04	13.8	0.0	0.11	12.4	0.0	1.7	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_29	PF13551.1	gi|257052613|ref|YP_003130446.1|	-	0.04	14.0	0.0	0.079	13.1	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_27	PF13463.1	gi|257052613|ref|YP_003130446.1|	-	0.059	13.7	0.0	0.12	12.7	0.0	1.6	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Rrf2	PF02082.15	gi|257052613|ref|YP_003130446.1|	-	0.061	13.4	0.0	0.14	12.2	0.0	1.6	1	0	0	1	1	1	0	Transcriptional	regulator
Mga	PF05043.8	gi|257052613|ref|YP_003130446.1|	-	0.084	13.1	0.0	0.21	11.8	0.0	1.6	2	0	0	2	2	1	0	Mga	helix-turn-helix	domain
HTH_9	PF08221.6	gi|257052613|ref|YP_003130446.1|	-	0.1	12.4	0.0	0.17	11.7	0.0	1.3	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
GerE	PF00196.14	gi|257052613|ref|YP_003130446.1|	-	0.14	11.5	0.1	0.34	10.2	0.0	1.6	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	luxR	family
TrkA_N	PF02254.13	gi|257052614|ref|YP_003130447.1|	-	1.4e-26	92.7	0.3	2e-26	92.2	0.2	1.2	1	0	0	1	1	1	1	TrkA-N	domain
TrkA_C	PF02080.16	gi|257052614|ref|YP_003130447.1|	-	2.7e-13	49.3	0.2	4.7e-13	48.5	0.1	1.4	1	0	0	1	1	1	1	TrkA-C	domain
UDPG_MGDP_dh_N	PF03721.9	gi|257052614|ref|YP_003130447.1|	-	2.6e-05	23.6	0.0	8.2e-05	22.0	0.0	1.8	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NAD_binding_10	PF13460.1	gi|257052614|ref|YP_003130447.1|	-	3.1e-05	24.0	0.4	0.00015	21.8	0.2	1.9	2	0	0	2	2	2	1	NADH(P)-binding
3HCDH_N	PF02737.13	gi|257052614|ref|YP_003130447.1|	-	4e-05	23.3	0.2	5.7e-05	22.8	0.1	1.3	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_7	PF13241.1	gi|257052614|ref|YP_003130447.1|	-	0.0001	22.5	0.1	0.00015	21.9	0.0	1.4	1	0	0	1	1	1	1	Putative	NAD(P)-binding
FAD_binding_3	PF01494.14	gi|257052614|ref|YP_003130447.1|	-	0.00019	20.6	0.1	0.00022	20.3	0.0	1.1	1	0	0	1	1	1	1	FAD	binding	domain
ApbA	PF02558.11	gi|257052614|ref|YP_003130447.1|	-	0.00025	20.5	0.0	0.0004	19.8	0.0	1.3	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
AdoHcyase_NAD	PF00670.16	gi|257052614|ref|YP_003130447.1|	-	0.0003	20.6	0.1	0.00039	20.2	0.1	1.3	1	0	0	1	1	1	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
DAO	PF01266.19	gi|257052614|ref|YP_003130447.1|	-	0.0007	18.5	0.1	0.0015	17.5	0.1	1.5	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
NmrA	PF05368.8	gi|257052614|ref|YP_003130447.1|	-	0.0024	17.1	0.1	0.004	16.4	0.1	1.5	1	0	0	1	1	1	1	NmrA-like	family
2-Hacid_dh_C	PF02826.14	gi|257052614|ref|YP_003130447.1|	-	0.0039	16.3	0.0	0.0073	15.4	0.0	1.5	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_2	PF03446.10	gi|257052614|ref|YP_003130447.1|	-	0.0046	16.8	0.3	0.0094	15.7	0.1	1.7	1	1	1	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
ADH_zinc_N	PF00107.21	gi|257052614|ref|YP_003130447.1|	-	0.0091	15.5	1.9	0.71	9.4	0.4	2.1	1	1	1	2	2	2	1	Zinc-binding	dehydrogenase
Pyr_redox	PF00070.22	gi|257052614|ref|YP_003130447.1|	-	0.0095	16.3	0.2	0.018	15.4	0.1	1.5	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
IlvN	PF07991.7	gi|257052614|ref|YP_003130447.1|	-	0.0097	15.2	0.0	0.019	14.3	0.0	1.5	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
CPSase_L_chain	PF00289.17	gi|257052614|ref|YP_003130447.1|	-	0.022	14.8	0.2	0.034	14.2	0.1	1.3	1	0	0	1	1	1	0	Carbamoyl-phosphate	synthase	L	chain,	N-terminal	domain
Gp_dh_N	PF00044.19	gi|257052614|ref|YP_003130447.1|	-	0.026	14.5	0.0	0.039	13.9	0.0	1.3	1	0	0	1	1	1	0	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
AlaDh_PNT_C	PF01262.16	gi|257052614|ref|YP_003130447.1|	-	0.031	13.8	0.2	0.053	13.0	0.1	1.4	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
F420_oxidored	PF03807.12	gi|257052614|ref|YP_003130447.1|	-	0.035	14.5	0.1	0.23	11.9	0.0	2.1	2	0	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
Saccharop_dh	PF03435.13	gi|257052614|ref|YP_003130447.1|	-	0.036	13.0	0.1	0.043	12.8	0.1	1.1	1	0	0	1	1	1	0	Saccharopine	dehydrogenase
NAD_Gly3P_dh_N	PF01210.18	gi|257052614|ref|YP_003130447.1|	-	0.045	13.4	0.0	0.071	12.8	0.0	1.3	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Thi4	PF01946.12	gi|257052614|ref|YP_003130447.1|	-	0.052	12.6	0.1	0.067	12.2	0.1	1.2	1	0	0	1	1	1	0	Thi4	family
B12-binding	PF02310.14	gi|257052614|ref|YP_003130447.1|	-	0.056	13.3	0.1	0.15	11.8	0.1	1.8	1	1	0	1	1	1	0	B12	binding	domain
XdhC_C	PF13478.1	gi|257052614|ref|YP_003130447.1|	-	0.069	13.4	0.1	0.11	12.8	0.0	1.4	1	0	0	1	1	1	0	XdhC	Rossmann	domain
Pyr_redox_2	PF07992.9	gi|257052614|ref|YP_003130447.1|	-	0.092	12.6	0.2	0.25	11.2	0.0	1.6	1	1	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
GFO_IDH_MocA	PF01408.17	gi|257052614|ref|YP_003130447.1|	-	0.095	13.2	0.1	0.15	12.6	0.0	1.4	1	0	0	1	1	1	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
MatE	PF01554.13	gi|257052616|ref|YP_003130449.1|	-	1.4e-53	180.8	32.2	5.3e-29	100.9	6.5	2.9	2	1	1	3	3	3	2	MatE
Polysacc_synt_C	PF14667.1	gi|257052616|ref|YP_003130449.1|	-	5.5e-10	39.2	11.2	5.5e-10	39.2	7.7	3.9	3	1	1	4	4	4	2	Polysaccharide	biosynthesis	C-terminal	domain
PK_C	PF02887.11	gi|257052617|ref|YP_003130450.1|	-	5.8e-08	32.2	0.1	1.1e-07	31.4	0.0	1.4	1	1	0	1	1	1	1	Pyruvate	kinase,	alpha/beta	domain
Asp_Glu_race	PF01177.17	gi|257052617|ref|YP_003130450.1|	-	0.089	12.6	0.0	0.14	12.0	0.0	1.3	1	0	0	1	1	1	0	Asp/Glu/Hydantoin	racemase
DUF3568	PF12092.3	gi|257052618|ref|YP_003130451.1|	-	0.13	11.9	0.0	0.21	11.2	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3568)
Pribosyltran_N	PF13793.1	gi|257052619|ref|YP_003130452.1|	-	7.4e-23	80.5	0.0	1.7e-20	72.9	0.0	2.2	2	0	0	2	2	2	2	N-terminal	domain	of	ribose	phosphate	pyrophosphokinase
Pribosyltran	PF00156.22	gi|257052619|ref|YP_003130452.1|	-	4.4e-08	32.8	2.4	3.3e-07	30.0	0.8	2.6	2	2	0	2	2	2	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.1	gi|257052619|ref|YP_003130452.1|	-	0.01	15.0	0.3	0.026	13.7	0.0	1.7	2	0	0	2	2	2	0	Uracil	phosphoribosyltransferase
Pribosyl_synth	PF14572.1	gi|257052619|ref|YP_003130452.1|	-	0.011	15.5	0.4	0.019	14.7	0.3	1.4	1	0	0	1	1	1	0	Phosphoribosyl	synthetase-associated	domain
MelC1	PF06236.6	gi|257052619|ref|YP_003130452.1|	-	0.028	14.4	0.6	0.092	12.7	0.4	1.8	1	0	0	1	1	1	0	Tyrosinase	co-factor	MelC1
Latarcin	PF10279.4	gi|257052620|ref|YP_003130453.1|	-	0.064	13.4	1.5	8.7	6.6	0.3	2.7	2	1	0	2	2	2	0	Latarcin	precursor
DUF3071	PF11268.3	gi|257052620|ref|YP_003130453.1|	-	0.45	10.2	4.2	1.1	8.9	2.9	1.8	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3071)
Sigma70_r3	PF04539.11	gi|257052620|ref|YP_003130453.1|	-	0.73	9.7	6.4	0.28	11.0	0.3	3.0	3	1	0	3	3	3	0	Sigma-70	region	3
Cas_Cas4	PF01930.12	gi|257052621|ref|YP_003130454.1|	-	0.00022	21.1	0.0	0.0012	18.7	0.0	1.9	2	0	0	2	2	2	1	Domain	of	unknown	function	DUF83
PDDEXK_1	PF12705.2	gi|257052621|ref|YP_003130454.1|	-	0.16	11.3	6.2	0.14	11.4	0.4	2.2	1	1	0	2	2	2	0	PD-(D/E)XK	nuclease	superfamily
Sua5_yciO_yrdC	PF01300.13	gi|257052622|ref|YP_003130455.1|	-	3.5e-51	172.9	0.0	4e-51	172.7	0.0	1.0	1	0	0	1	1	1	1	Telomere	recombination
DUF21	PF01595.15	gi|257052623|ref|YP_003130456.1|	-	2.2e-52	177.0	0.2	3.1e-52	176.5	0.1	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF21
CorC_HlyC	PF03471.12	gi|257052623|ref|YP_003130456.1|	-	2.2e-21	75.4	1.1	5.2e-21	74.2	0.8	1.7	1	0	0	1	1	1	1	Transporter	associated	domain
CBS	PF00571.23	gi|257052623|ref|YP_003130456.1|	-	3.2e-16	58.8	5.0	2e-07	30.6	0.2	3.0	3	0	0	3	3	3	2	CBS	domain
PHO4	PF01384.15	gi|257052624|ref|YP_003130457.1|	-	6.8e-41	139.9	30.9	6.8e-41	139.9	21.4	1.6	1	1	1	2	2	2	1	Phosphate	transporter	family
DUF4581	PF15167.1	gi|257052625|ref|YP_003130458.1|	-	0.016	15.0	0.6	2.3	8.1	0.1	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4581)
Toprim_3	PF13362.1	gi|257052625|ref|YP_003130458.1|	-	0.79	10.0	5.2	16	5.7	1.1	2.4	2	0	0	2	2	2	0	Toprim	domain
UPRTase	PF14681.1	gi|257052626|ref|YP_003130459.1|	-	5.4e-58	195.6	0.0	6.1e-58	195.4	0.0	1.0	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
Pribosyltran	PF00156.22	gi|257052626|ref|YP_003130459.1|	-	1.2e-06	28.3	0.2	1.9e-06	27.5	0.1	1.3	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
PRTase_2	PF15609.1	gi|257052626|ref|YP_003130459.1|	-	0.037	13.3	0.0	0.051	12.8	0.0	1.4	1	1	0	1	1	1	0	Phosphoribosyl	transferase
PIN	PF01850.16	gi|257052627|ref|YP_003130460.1|	-	2e-12	47.4	0.6	2.4e-12	47.2	0.4	1.0	1	0	0	1	1	1	1	PIN	domain
HTH_IclR	PF09339.5	gi|257052628|ref|YP_003130461.1|	-	2.6e-07	30.0	0.0	3.5e-07	29.6	0.0	1.1	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_20	PF12840.2	gi|257052628|ref|YP_003130461.1|	-	3e-07	30.1	0.0	4.3e-07	29.6	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.7	gi|257052628|ref|YP_003130461.1|	-	4.4e-05	23.0	0.0	7.3e-05	22.3	0.0	1.3	1	1	0	1	1	1	1	HTH	domain
MarR_2	PF12802.2	gi|257052628|ref|YP_003130461.1|	-	0.00015	21.3	0.0	0.00021	20.8	0.0	1.2	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.14	gi|257052628|ref|YP_003130461.1|	-	0.00054	19.6	0.0	0.00071	19.2	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_CodY	PF08222.6	gi|257052628|ref|YP_003130461.1|	-	0.004	16.4	0.0	0.006	15.9	0.0	1.2	1	0	0	1	1	1	1	CodY	helix-turn-helix	domain
HTH_24	PF13412.1	gi|257052628|ref|YP_003130461.1|	-	0.0049	16.2	0.0	0.0075	15.6	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_23	PF13384.1	gi|257052628|ref|YP_003130461.1|	-	0.017	14.7	0.0	0.026	14.1	0.0	1.3	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_Tnp_4	PF13613.1	gi|257052628|ref|YP_003130461.1|	-	0.036	13.5	0.0	0.063	12.8	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	of	DDE	superfamily	endonuclease
HTH_28	PF13518.1	gi|257052628|ref|YP_003130461.1|	-	0.037	14.0	0.0	0.051	13.5	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_17	PF12728.2	gi|257052628|ref|YP_003130461.1|	-	0.042	14.1	0.0	0.07	13.4	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
MarR	PF01047.17	gi|257052628|ref|YP_003130461.1|	-	0.052	13.2	0.0	0.077	12.7	0.0	1.2	1	0	0	1	1	1	0	MarR	family
HTH_5	PF01022.15	gi|257052628|ref|YP_003130461.1|	-	0.069	12.8	0.0	0.089	12.4	0.0	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
FaeA	PF04703.7	gi|257052628|ref|YP_003130461.1|	-	0.15	12.2	0.0	0.22	11.7	0.0	1.2	1	0	0	1	1	1	0	FaeA-like	protein
ANTAR	PF03861.9	gi|257052628|ref|YP_003130461.1|	-	0.15	11.6	0.1	0.22	11.1	0.0	1.2	1	0	0	1	1	1	0	ANTAR	domain
UPF0029	PF01205.14	gi|257052629|ref|YP_003130462.1|	-	1.3e-31	108.5	0.0	1.8e-31	108.0	0.0	1.2	1	0	0	1	1	1	1	Uncharacterized	protein	family	UPF0029
DUF1949	PF09186.6	gi|257052629|ref|YP_003130462.1|	-	4.6e-09	35.7	0.1	9.5e-09	34.7	0.0	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1949)
EFG_C	PF00679.19	gi|257052629|ref|YP_003130462.1|	-	7.6e-05	22.5	0.0	0.00013	21.8	0.0	1.3	1	0	0	1	1	1	1	Elongation	factor	G	C-terminus
DUF2127	PF09900.4	gi|257052630|ref|YP_003130463.1|	-	0.0009	19.2	3.6	0.001	19.1	2.5	1.2	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2127)
OPT	PF03169.10	gi|257052630|ref|YP_003130463.1|	-	0.033	12.6	5.8	0.046	12.1	4.0	1.2	1	0	0	1	1	1	0	OPT	oligopeptide	transporter	protein
Cation_ATPase_C	PF00689.16	gi|257052630|ref|YP_003130463.1|	-	1.7	8.1	6.8	1.3	8.5	3.2	1.9	2	1	0	2	2	2	0	Cation	transporting	ATPase,	C-terminus
bPH_2	PF03703.9	gi|257052631|ref|YP_003130464.1|	-	4.7e-09	36.1	0.1	8.7e-09	35.2	0.1	1.4	1	0	0	1	1	1	1	Bacterial	PH	domain
DUF2178	PF09946.4	gi|257052631|ref|YP_003130464.1|	-	0.00054	19.6	3.0	0.001	18.7	1.2	1.9	1	1	1	2	2	2	1	Predicted	membrane	protein	(DUF2178)
MLANA	PF14991.1	gi|257052631|ref|YP_003130464.1|	-	0.029	14.3	0.1	0.051	13.5	0.1	1.4	1	0	0	1	1	1	0	Protein	melan-A
UPF0029	PF01205.14	gi|257052633|ref|YP_003130466.1|	-	1.6e-33	114.6	0.0	2.3e-33	114.1	0.0	1.2	1	0	0	1	1	1	1	Uncharacterized	protein	family	UPF0029
DUF1949	PF09186.6	gi|257052633|ref|YP_003130466.1|	-	1.5e-11	43.6	0.5	1.1e-10	40.8	0.0	2.2	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1949)
EFG_C	PF00679.19	gi|257052633|ref|YP_003130466.1|	-	0.00019	21.2	0.0	0.00043	20.0	0.0	1.5	1	0	0	1	1	1	1	Elongation	factor	G	C-terminus
Lar_restr_allev	PF14354.1	gi|257052634|ref|YP_003130467.1|	-	0.0032	17.7	0.6	0.0034	17.6	0.4	1.2	1	0	0	1	1	1	1	Restriction	alleviation	protein	Lar
Zn-ribbon_8	PF09723.5	gi|257052634|ref|YP_003130467.1|	-	0.0059	16.5	1.0	0.93	9.4	0.0	2.1	2	0	0	2	2	2	1	Zinc	ribbon	domain
UPF0547	PF10571.4	gi|257052634|ref|YP_003130467.1|	-	0.0089	15.7	6.0	0.33	10.6	0.5	2.1	2	0	0	2	2	2	2	Uncharacterised	protein	family	UPF0547
DZR	PF12773.2	gi|257052634|ref|YP_003130467.1|	-	0.019	14.7	0.8	0.049	13.4	0.5	1.7	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-dskA_traR	PF01258.12	gi|257052634|ref|YP_003130467.1|	-	0.023	14.4	3.8	0.19	11.5	1.1	2.1	2	0	0	2	2	2	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
zinc_ribbon_4	PF13717.1	gi|257052634|ref|YP_003130467.1|	-	0.028	14.1	0.8	5.9	6.6	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-RING_3	PF14369.1	gi|257052634|ref|YP_003130467.1|	-	0.037	14.0	3.6	2.9	7.9	0.1	2.3	2	1	0	2	2	2	0	zinc-finger
zinc_ribbon_5	PF13719.1	gi|257052634|ref|YP_003130467.1|	-	0.064	12.8	1.9	5.9	6.5	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
Terminase_GpA	PF05876.7	gi|257052634|ref|YP_003130467.1|	-	0.07	11.4	0.1	0.075	11.3	0.1	1.0	1	0	0	1	1	1	0	Phage	terminase	large	subunit	(GpA)
zf-RING_4	PF14570.1	gi|257052634|ref|YP_003130467.1|	-	0.072	12.6	1.5	3.1	7.4	0.0	2.1	2	0	0	2	2	2	0	RING/Ubox	like	zinc-binding	domain
zf-ribbon_3	PF13248.1	gi|257052634|ref|YP_003130467.1|	-	0.078	12.2	4.2	0.43	9.8	3.0	1.9	1	1	1	2	2	2	0	zinc-ribbon	domain
zf-FPG_IleRS	PF06827.9	gi|257052634|ref|YP_003130467.1|	-	0.079	12.6	0.9	0.079	12.6	0.7	2.1	2	0	0	2	2	2	0	Zinc	finger	found	in	FPG	and	IleRS
zinc_ribbon_2	PF13240.1	gi|257052634|ref|YP_003130467.1|	-	0.11	12.0	1.9	0.7	9.4	0.2	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
IBR	PF01485.16	gi|257052634|ref|YP_003130467.1|	-	0.12	12.2	0.6	0.32	10.8	0.4	1.7	1	1	0	1	1	1	0	IBR	domain
DUF35_N	PF12172.3	gi|257052634|ref|YP_003130467.1|	-	0.12	12.3	3.6	2.8	7.9	0.3	2.2	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
DUF329	PF03884.9	gi|257052634|ref|YP_003130467.1|	-	0.14	11.6	1.8	6.4	6.4	0.1	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF329)
Opy2	PF09463.5	gi|257052634|ref|YP_003130467.1|	-	0.15	12.2	1.2	12	6.0	0.1	2.1	2	0	0	2	2	2	0	Opy2	protein
zf-UDP	PF14569.1	gi|257052634|ref|YP_003130467.1|	-	0.23	11.2	1.4	0.34	10.6	0.9	1.3	1	1	0	1	1	1	0	Zinc-binding	RING-finger
zf-TFIIB	PF13453.1	gi|257052634|ref|YP_003130467.1|	-	0.26	10.4	4.1	1.7	7.9	3.0	1.9	1	1	1	2	2	2	0	Transcription	factor	zinc-finger
zf-ISL3	PF14690.1	gi|257052634|ref|YP_003130467.1|	-	2.1	8.4	5.8	5.7	7.0	1.3	2.3	2	1	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
DNA_ligase_ZBD	PF03119.11	gi|257052634|ref|YP_003130467.1|	-	3.1	7.5	6.1	4	7.2	0.1	2.7	2	1	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-C4_Topoisom	PF01396.14	gi|257052634|ref|YP_003130467.1|	-	3.2	7.3	5.5	65	3.1	3.8	2.2	1	1	0	1	1	1	0	Topoisomerase	DNA	binding	C4	zinc	finger
zf-NADH-PPase	PF09297.6	gi|257052634|ref|YP_003130467.1|	-	3.5	7.2	6.5	1.9	8.1	1.2	2.2	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
zf-CCHC_5	PF14787.1	gi|257052634|ref|YP_003130467.1|	-	4.6	6.8	7.7	0.29	10.6	1.5	1.9	2	0	0	2	2	2	0	GAG-polyprotein	viral	zinc-finger
Iron_transport	PF10634.4	gi|257052635|ref|YP_003130468.1|	-	0.0011	18.8	0.0	0.021	14.7	0.0	2.5	2	1	0	2	2	2	1	Fe2+	transport	protein
TAT_signal	PF10518.4	gi|257052636|ref|YP_003130469.1|	-	0.0004	20.1	0.0	0.001	18.9	0.0	1.7	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
FlgD_ig	PF13860.1	gi|257052637|ref|YP_003130470.1|	-	0.0039	16.8	3.9	1.5	8.6	1.1	2.8	2	0	0	2	2	2	2	FlgD	Ig-like	domain
DUF3568	PF12092.3	gi|257052637|ref|YP_003130470.1|	-	0.072	12.7	0.3	0.21	11.3	0.2	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3568)
DUF1349	PF07081.6	gi|257052639|ref|YP_003130472.1|	-	1.2e-60	204.0	0.7	1.3e-60	203.8	0.5	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1349)
Methyltransf_11	PF08241.7	gi|257052640|ref|YP_003130473.1|	-	1.4e-21	76.8	0.1	2.6e-21	75.9	0.0	1.5	2	0	0	2	2	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|257052640|ref|YP_003130473.1|	-	4.6e-17	62.2	0.0	5.6e-17	61.9	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|257052640|ref|YP_003130473.1|	-	7.7e-13	49.0	0.0	1.7e-12	47.8	0.0	1.5	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|257052640|ref|YP_003130473.1|	-	2e-12	47.4	0.0	3.8e-12	46.5	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|257052640|ref|YP_003130473.1|	-	5.1e-12	45.6	0.0	6.5e-12	45.2	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|257052640|ref|YP_003130473.1|	-	2.3e-11	43.2	0.0	3.1e-11	42.8	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_25	PF13649.1	gi|257052640|ref|YP_003130473.1|	-	4.7e-11	42.9	0.0	7.8e-11	42.2	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|257052640|ref|YP_003130473.1|	-	1e-07	31.9	0.3	2.1e-07	30.9	0.1	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|257052640|ref|YP_003130473.1|	-	0.00063	19.1	0.0	0.0011	18.4	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	small	domain
MetW	PF07021.7	gi|257052640|ref|YP_003130473.1|	-	0.0052	16.1	0.0	0.0076	15.6	0.0	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
RrnaAD	PF00398.15	gi|257052640|ref|YP_003130473.1|	-	0.029	13.3	0.0	0.068	12.1	0.0	1.6	1	1	1	2	2	2	0	Ribosomal	RNA	adenine	dimethylase
Methyltransf_29	PF03141.11	gi|257052640|ref|YP_003130473.1|	-	0.058	11.7	0.0	0.07	11.4	0.0	1.1	1	0	0	1	1	1	0	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
DREV	PF05219.7	gi|257052640|ref|YP_003130473.1|	-	0.16	10.7	0.0	0.22	10.3	0.0	1.2	1	0	0	1	1	1	0	DREV	methyltransferase
Response_reg	PF00072.19	gi|257052642|ref|YP_003130475.1|	-	3e-27	94.8	0.0	3.4e-27	94.6	0.0	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
DUF162	PF02589.10	gi|257052642|ref|YP_003130475.1|	-	0.024	14.1	0.0	0.029	13.8	0.0	1.1	1	0	0	1	1	1	0	Uncharacterised	ACR,	YkgG	family	COG1556
FleQ	PF06490.6	gi|257052642|ref|YP_003130475.1|	-	0.042	14.0	0.0	0.063	13.4	0.0	1.4	1	1	0	1	1	1	0	Flagellar	regulatory	protein	FleQ
HEAT_2	PF13646.1	gi|257052643|ref|YP_003130476.1|	-	9e-14	51.5	3.1	1e-10	41.7	0.2	2.9	3	2	1	4	4	4	2	HEAT	repeats
HEAT	PF02985.17	gi|257052643|ref|YP_003130476.1|	-	0.0006	19.6	1.5	2.4	8.4	0.0	3.7	4	0	0	4	4	4	2	HEAT	repeat
HemY_N	PF07219.8	gi|257052643|ref|YP_003130476.1|	-	0.0081	15.7	0.1	0.021	14.3	0.1	1.6	1	0	0	1	1	1	1	HemY	protein	N-terminus
HEAT_EZ	PF13513.1	gi|257052643|ref|YP_003130476.1|	-	0.028	14.9	5.1	0.15	12.6	0.5	3.7	3	1	1	4	4	4	0	HEAT-like	repeat
HEAT_PBS	PF03130.11	gi|257052643|ref|YP_003130476.1|	-	0.035	14.5	5.2	0.057	13.9	0.8	3.4	4	0	0	4	4	4	0	PBS	lyase	HEAT-like	repeat
ATP-synt_B	PF00430.13	gi|257052643|ref|YP_003130476.1|	-	0.087	12.6	0.0	0.18	11.5	0.0	1.4	1	0	0	1	1	1	0	ATP	synthase	B/B'	CF(0)
TRP	PF06011.7	gi|257052643|ref|YP_003130476.1|	-	0.11	11.1	0.0	0.13	10.7	0.0	1.1	1	0	0	1	1	1	0	Transient	receptor	potential	(TRP)	ion	channel
Glyco_tranf_2_3	PF13641.1	gi|257052644|ref|YP_003130477.1|	-	7.2e-31	107.7	0.0	3.3e-30	105.5	0.0	1.9	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glycos_transf_2	PF00535.21	gi|257052644|ref|YP_003130477.1|	-	2.9e-20	72.6	0.2	4.7e-11	42.6	0.1	2.5	3	0	0	3	3	3	2	Glycosyl	transferase	family	2
Glyco_trans_2_3	PF13632.1	gi|257052644|ref|YP_003130477.1|	-	8.5e-17	61.4	3.4	8.5e-17	61.4	2.4	2.1	2	1	0	2	2	2	1	Glycosyl	transferase	family	group	2
Glyco_transf_21	PF13506.1	gi|257052644|ref|YP_003130477.1|	-	8.8e-09	34.8	0.0	2.6e-08	33.3	0.0	1.8	1	1	0	1	1	1	1	Glycosyl	transferase	family	21
Chitin_synth_2	PF03142.10	gi|257052644|ref|YP_003130477.1|	-	1e-05	24.1	2.0	0.0012	17.3	0.1	2.8	3	0	0	3	3	3	2	Chitin	synthase
Glyco_tranf_2_4	PF13704.1	gi|257052644|ref|YP_003130477.1|	-	0.0065	16.7	0.0	0.014	15.7	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
HisKA	PF00512.20	gi|257052645|ref|YP_003130478.1|	-	3.7e-16	58.8	1.5	1.3e-14	53.9	0.2	2.4	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c	PF02518.21	gi|257052645|ref|YP_003130478.1|	-	3.8e-14	52.3	0.0	6.4e-14	51.6	0.0	1.3	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
GAF	PF01590.21	gi|257052645|ref|YP_003130478.1|	-	5e-09	36.4	0.0	1e-08	35.4	0.0	1.6	1	0	0	1	1	1	1	GAF	domain
GAF_3	PF13492.1	gi|257052645|ref|YP_003130478.1|	-	8.7e-07	29.0	0.1	2.6e-06	27.5	0.0	1.8	2	0	0	2	2	2	1	GAF	domain
GAF_2	PF13185.1	gi|257052645|ref|YP_003130478.1|	-	4.3e-05	24.0	0.0	0.00016	22.1	0.0	2.0	1	0	0	1	1	1	1	GAF	domain
PAS_4	PF08448.5	gi|257052646|ref|YP_003130479.1|	-	6.3e-41	138.8	9.6	5.3e-14	52.1	0.3	4.1	4	0	0	4	4	4	3	PAS	fold
PAS_9	PF13426.1	gi|257052646|ref|YP_003130479.1|	-	9.6e-36	122.3	1.1	4.2e-17	62.4	0.0	4.3	4	0	0	4	4	4	3	PAS	domain
PAS	PF00989.19	gi|257052646|ref|YP_003130479.1|	-	1.8e-28	98.6	1.1	4e-16	58.7	0.0	4.5	4	1	0	4	4	4	3	PAS	fold
HATPase_c	PF02518.21	gi|257052646|ref|YP_003130479.1|	-	3.3e-20	71.8	0.3	7.9e-20	70.6	0.2	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_8	PF13188.1	gi|257052646|ref|YP_003130479.1|	-	3.2e-15	55.3	1.9	1.6e-06	27.7	0.0	4.3	4	0	0	4	4	3	3	PAS	domain
Response_reg	PF00072.19	gi|257052646|ref|YP_003130479.1|	-	1.6e-13	50.6	0.0	4.2e-13	49.2	0.0	1.7	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HisKA	PF00512.20	gi|257052646|ref|YP_003130479.1|	-	4.5e-13	48.9	0.2	4.5e-13	48.9	0.1	2.8	3	0	0	3	3	2	1	His	Kinase	A	(phospho-acceptor)	domain
GAF_3	PF13492.1	gi|257052646|ref|YP_003130479.1|	-	2.9e-10	40.3	0.4	1e-08	35.3	0.0	3.1	3	1	1	4	4	4	1	GAF	domain
GAF_2	PF13185.1	gi|257052646|ref|YP_003130479.1|	-	1.1e-09	39.0	4.5	8.6e-09	36.0	0.3	3.2	3	0	0	3	3	3	1	GAF	domain
PAS_3	PF08447.6	gi|257052646|ref|YP_003130479.1|	-	7.6e-08	32.3	0.1	4.5e-07	29.8	0.0	2.5	3	0	0	3	3	2	1	PAS	fold
GAF	PF01590.21	gi|257052646|ref|YP_003130479.1|	-	9.8e-06	25.7	0.0	3.2e-05	24.1	0.0	2.0	1	0	0	1	1	1	1	GAF	domain
PAS_10	PF13596.1	gi|257052646|ref|YP_003130479.1|	-	0.00095	19.4	0.0	0.0097	16.1	0.0	2.4	2	0	0	2	2	2	1	PAS	domain
HATPase_c_3	PF13589.1	gi|257052646|ref|YP_003130479.1|	-	0.0056	16.3	0.0	0.013	15.1	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_7	PF12860.2	gi|257052646|ref|YP_003130479.1|	-	0.026	14.5	0.3	1.7	8.6	0.0	4.0	3	2	1	4	4	4	0	PAS	fold
SUKH_6	PF14568.1	gi|257052646|ref|YP_003130479.1|	-	0.049	14.1	0.1	0.22	12.0	0.0	2.1	1	0	0	1	1	1	0	SMI1-KNR4	cell-wall
DAO	PF01266.19	gi|257052648|ref|YP_003130481.1|	-	4.8e-10	38.8	8.9	2.3e-05	23.4	1.1	2.5	2	1	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.19	gi|257052648|ref|YP_003130481.1|	-	2.7e-08	33.0	4.5	4.9e-06	25.6	0.4	2.6	3	0	0	3	3	3	2	FAD	binding	domain
Pyr_redox_2	PF07992.9	gi|257052648|ref|YP_003130481.1|	-	1.5e-07	31.4	3.8	8.8e-05	22.4	1.0	2.3	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.9	gi|257052648|ref|YP_003130481.1|	-	9.7e-07	27.5	0.3	0.0026	16.2	0.2	2.2	2	0	0	2	2	2	2	HI0933-like	protein
NAD_binding_8	PF13450.1	gi|257052648|ref|YP_003130481.1|	-	2.1e-05	24.4	0.5	0.00083	19.3	0.1	2.4	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
Lycopene_cycl	PF05834.7	gi|257052648|ref|YP_003130481.1|	-	3e-05	23.1	0.6	0.0017	17.3	0.0	2.1	2	0	0	2	2	2	1	Lycopene	cyclase	protein
GIDA	PF01134.17	gi|257052648|ref|YP_003130481.1|	-	0.00014	20.8	0.9	0.00022	20.2	0.4	1.4	1	1	0	1	1	1	1	Glucose	inhibited	division	protein	A
FAD_binding_3	PF01494.14	gi|257052648|ref|YP_003130481.1|	-	0.00028	20.0	4.0	0.00045	19.3	0.7	2.0	1	1	1	2	2	2	1	FAD	binding	domain
FAD_oxidored	PF12831.2	gi|257052648|ref|YP_003130481.1|	-	0.00044	19.4	1.9	0.00044	19.4	1.3	1.6	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
3HCDH_N	PF02737.13	gi|257052648|ref|YP_003130481.1|	-	0.0006	19.5	0.1	0.00091	18.9	0.0	1.4	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_9	PF13454.1	gi|257052648|ref|YP_003130481.1|	-	0.0012	18.6	2.7	0.0085	15.8	0.1	2.8	3	0	0	3	3	3	1	FAD-NAD(P)-binding
Pyr_redox	PF00070.22	gi|257052648|ref|YP_003130481.1|	-	0.0015	18.8	0.8	0.0048	17.2	0.2	2.1	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.12	gi|257052648|ref|YP_003130481.1|	-	0.0053	15.8	0.6	0.01	14.9	0.1	1.7	2	0	0	2	2	2	1	Thi4	family
AlaDh_PNT_C	PF01262.16	gi|257052648|ref|YP_003130481.1|	-	0.013	15.0	0.6	0.027	14.0	0.3	1.7	1	1	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Pyr_redox_3	PF13738.1	gi|257052648|ref|YP_003130481.1|	-	0.038	14.0	3.1	0.59	10.1	0.1	2.2	1	1	1	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Trp_halogenase	PF04820.9	gi|257052648|ref|YP_003130481.1|	-	0.11	11.1	1.3	1.1	7.7	0.2	2.0	2	0	0	2	2	2	0	Tryptophan	halogenase
GPW_gp25	PF04965.9	gi|257052649|ref|YP_003130482.1|	-	0.048	13.1	0.4	0.13	11.7	0.0	1.9	2	0	0	2	2	2	0	Gene	25-like	lysozyme
DUF826	PF05696.6	gi|257052650|ref|YP_003130483.1|	-	0.088	12.9	0.7	0.78	9.9	0.1	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF826)
Usp	PF00582.21	gi|257052651|ref|YP_003130484.1|	-	1.3e-09	38.3	3.9	7.6e-09	35.8	0.9	2.0	2	0	0	2	2	2	1	Universal	stress	protein	family
DUF463	PF04317.7	gi|257052651|ref|YP_003130484.1|	-	0.067	11.7	0.5	0.088	11.3	0.3	1.1	1	0	0	1	1	1	0	YcjX-like	family,	DUF463
AA_permease	PF00324.16	gi|257052652|ref|YP_003130485.1|	-	3.4e-49	167.4	39.8	4.3e-49	167.1	27.6	1.1	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease_2	PF13520.1	gi|257052652|ref|YP_003130485.1|	-	6.9e-46	156.6	37.7	8.5e-46	156.3	26.1	1.1	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease_C	PF13906.1	gi|257052652|ref|YP_003130485.1|	-	0.0053	16.5	0.8	0.0053	16.5	0.6	2.8	3	0	0	3	3	3	1	C-terminus	of	AA_permease
PHO4	PF01384.15	gi|257052653|ref|YP_003130486.1|	-	4.5e-39	133.9	26.3	6.8e-39	133.4	18.2	1.3	1	0	0	1	1	1	1	Phosphate	transporter	family
NadA	PF02445.11	gi|257052654|ref|YP_003130487.1|	-	8.4e-103	343.2	0.0	9.6e-103	343.0	0.0	1.0	1	0	0	1	1	1	1	Quinolinate	synthetase	A	protein
HEM4	PF02602.10	gi|257052654|ref|YP_003130487.1|	-	0.098	11.8	0.0	0.23	10.6	0.0	1.5	1	0	0	1	1	1	0	Uroporphyrinogen-III	synthase	HemD
FAD_binding_2	PF00890.19	gi|257052655|ref|YP_003130488.1|	-	4.6e-74	249.7	14.6	6.7e-72	242.6	1.5	2.3	2	0	0	2	2	2	2	FAD	binding	domain
Succ_DH_flav_C	PF02910.15	gi|257052655|ref|YP_003130488.1|	-	2e-07	30.9	0.2	3.9e-07	29.9	0.1	1.5	1	0	0	1	1	1	1	Fumarate	reductase	flavoprotein	C-term
Pyr_redox_2	PF07992.9	gi|257052655|ref|YP_003130488.1|	-	3.9e-05	23.6	9.7	0.0029	17.5	0.2	2.9	2	2	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.17	gi|257052655|ref|YP_003130488.1|	-	0.00011	21.2	1.9	0.046	12.5	2.6	2.3	2	0	0	2	2	2	2	Glucose	inhibited	division	protein	A
FAD_oxidored	PF12831.2	gi|257052655|ref|YP_003130488.1|	-	0.00022	20.4	6.8	0.0033	16.5	3.0	2.6	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
DAO	PF01266.19	gi|257052655|ref|YP_003130488.1|	-	0.0024	16.8	0.7	0.0024	16.8	0.5	2.8	3	1	0	3	3	3	1	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.1	gi|257052655|ref|YP_003130488.1|	-	0.004	17.1	0.2	0.01	15.8	0.2	1.8	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
DUF3640	PF12342.3	gi|257052655|ref|YP_003130488.1|	-	0.065	12.7	1.2	0.35	10.4	0.0	3.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3640)
HI0933_like	PF03486.9	gi|257052655|ref|YP_003130488.1|	-	0.29	9.5	2.9	8.5	4.7	0.0	2.5	2	0	0	2	2	2	0	HI0933-like	protein
Macoilin	PF09726.4	gi|257052655|ref|YP_003130488.1|	-	4.7	5.3	8.7	6.5	4.9	6.0	1.1	1	0	0	1	1	1	0	Transmembrane	protein
QRPTase_C	PF01729.14	gi|257052656|ref|YP_003130489.1|	-	5.9e-56	188.6	2.4	7.5e-56	188.2	1.7	1.1	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
QRPTase_N	PF02749.11	gi|257052656|ref|YP_003130489.1|	-	2.9e-19	68.6	0.0	6.5e-19	67.5	0.0	1.6	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
Ribul_P_3_epim	PF00834.14	gi|257052656|ref|YP_003130489.1|	-	0.0063	15.6	0.8	0.052	12.6	0.0	2.2	1	1	1	2	2	2	1	Ribulose-phosphate	3	epimerase	family
S-AdoMet_synt_N	PF00438.15	gi|257052657|ref|YP_003130490.1|	-	0.1	12.8	0.2	0.19	11.9	0.1	1.5	2	0	0	2	2	2	0	S-adenosylmethionine	synthetase,	N-terminal	domain
TauE	PF01925.14	gi|257052658|ref|YP_003130491.1|	-	9.6e-16	57.9	28.3	9.6e-16	57.9	19.6	1.6	1	1	0	1	1	1	1	Sulfite	exporter	TauE/SafE
PMP22_Claudin	PF00822.15	gi|257052658|ref|YP_003130491.1|	-	1.2	8.7	5.2	0.25	10.9	0.1	2.4	3	0	0	3	3	3	0	PMP-22/EMP/MP20/Claudin	family
Multi_Drug_Res	PF00893.14	gi|257052658|ref|YP_003130491.1|	-	5.1	7.6	18.1	0.29	11.6	1.7	3.4	2	1	1	3	3	3	0	Small	Multidrug	Resistance	protein
YbjQ_1	PF01906.12	gi|257052659|ref|YP_003130492.1|	-	1.7e-36	124.7	1.1	1.9e-36	124.6	0.8	1.0	1	0	0	1	1	1	1	Putative	heavy-metal-binding
SeleniumBinding	PF11524.3	gi|257052659|ref|YP_003130492.1|	-	0.0011	19.0	0.1	0.0031	17.6	0.0	1.7	1	1	1	2	2	2	1	Selenium	binding	protein
Pan_kinase	PF03309.9	gi|257052659|ref|YP_003130492.1|	-	0.073	12.5	0.1	0.076	12.5	0.0	1.1	1	0	0	1	1	1	0	Type	III	pantothenate	kinase
DUF2929	PF11151.3	gi|257052660|ref|YP_003130493.1|	-	2.4	8.3	5.2	1	9.5	0.2	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2929)
Peptidase_M48	PF01435.13	gi|257052661|ref|YP_003130494.1|	-	3.7e-40	137.8	0.1	4.6e-40	137.5	0.1	1.1	1	0	0	1	1	1	1	Peptidase	family	M48
Peptidase_M56	PF05569.6	gi|257052661|ref|YP_003130494.1|	-	1e-08	34.5	0.1	4.5e-08	32.4	0.0	1.9	2	0	0	2	2	2	1	BlaR1	peptidase	M56
DUF45	PF01863.12	gi|257052661|ref|YP_003130494.1|	-	0.0032	17.2	0.0	0.0049	16.6	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF45
SprT-like	PF10263.4	gi|257052661|ref|YP_003130494.1|	-	0.1	12.2	0.1	0.16	11.6	0.1	1.3	1	0	0	1	1	1	0	SprT-like	family
BSP	PF04450.7	gi|257052661|ref|YP_003130494.1|	-	0.11	11.9	0.0	0.16	11.4	0.0	1.2	1	0	0	1	1	1	0	Peptidase	of	plants	and	bacteria
Peptidase_MA_2	PF13485.1	gi|257052661|ref|YP_003130494.1|	-	0.12	12.4	0.1	0.22	11.5	0.0	1.4	1	0	0	1	1	1	0	Peptidase	MA	superfamily
iPGM_N	PF06415.8	gi|257052662|ref|YP_003130495.1|	-	7.1e-78	260.9	0.1	9.3e-78	260.6	0.1	1.1	1	0	0	1	1	1	1	BPG-independent	PGAM	N-terminus	(iPGM_N)
Metalloenzyme	PF01676.13	gi|257052662|ref|YP_003130495.1|	-	2e-68	230.5	0.4	3.6e-33	114.9	0.1	2.0	2	0	0	2	2	2	2	Metalloenzyme	superfamily
Phosphodiest	PF01663.17	gi|257052662|ref|YP_003130495.1|	-	3e-08	33.3	0.1	4.8e-08	32.7	0.1	1.3	1	0	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Sulfatase	PF00884.18	gi|257052662|ref|YP_003130495.1|	-	0.00039	19.7	0.2	0.0013	17.9	0.0	2.1	2	1	0	2	2	2	1	Sulfatase
PglZ	PF08665.7	gi|257052662|ref|YP_003130495.1|	-	0.0019	17.9	0.1	0.0048	16.5	0.0	1.7	2	0	0	2	2	2	1	PglZ	domain
MFS_1	PF07690.11	gi|257052663|ref|YP_003130496.1|	-	7.1e-21	74.3	72.4	5.6e-20	71.3	31.7	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Nuc_H_symport	PF03825.11	gi|257052663|ref|YP_003130496.1|	-	1.3e-06	27.4	27.1	1.7e-06	27.0	18.8	1.1	1	0	0	1	1	1	1	Nucleoside	H+	symporter
MFS_1_like	PF12832.2	gi|257052663|ref|YP_003130496.1|	-	2.3e-06	27.2	0.2	2.3e-06	27.2	0.1	3.9	4	1	0	4	4	4	1	MFS_1	like	family
MFS_2	PF13347.1	gi|257052663|ref|YP_003130496.1|	-	0.00011	20.7	32.7	0.021	13.2	5.9	3.2	1	1	2	3	3	3	3	MFS/sugar	transport	protein
NurA	PF09376.5	gi|257052664|ref|YP_003130497.1|	-	1.1e-25	90.5	0.0	1.4e-25	90.2	0.0	1.1	1	0	0	1	1	1	1	NurA	domain
RRN7	PF11781.3	gi|257052665|ref|YP_003130498.1|	-	3.5e-05	23.1	2.2	0.015	14.8	0.1	2.1	2	0	0	2	2	2	2	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
zf-FPG_IleRS	PF06827.9	gi|257052665|ref|YP_003130498.1|	-	0.0031	17.1	0.4	0.27	10.9	0.0	2.1	2	0	0	2	2	2	1	Zinc	finger	found	in	FPG	and	IleRS
YhfH	PF14149.1	gi|257052665|ref|YP_003130498.1|	-	0.015	15.0	3.5	0.64	9.8	0.1	2.1	2	0	0	2	2	2	0	YhfH-like	protein
Desulfoferrod_N	PF06397.7	gi|257052665|ref|YP_003130498.1|	-	0.027	13.8	2.8	3.1	7.2	0.0	2.2	2	0	0	2	2	2	0	Desulfoferrodoxin,	N-terminal	domain
Zn-ribbon_8	PF09723.5	gi|257052665|ref|YP_003130498.1|	-	0.028	14.3	2.6	0.065	13.1	1.8	1.6	1	1	0	1	1	1	0	Zinc	ribbon	domain
Methyltransf_13	PF08421.6	gi|257052665|ref|YP_003130498.1|	-	0.028	13.9	1.7	1.4	8.5	0.1	2.1	2	0	0	2	2	2	0	Putative	zinc	binding	domain
UPF1_Zn_bind	PF09416.5	gi|257052665|ref|YP_003130498.1|	-	0.054	13.0	0.1	0.059	12.9	0.1	1.0	1	0	0	1	1	1	0	RNA	helicase	(UPF2	interacting	domain)
zf-ISL3	PF14690.1	gi|257052665|ref|YP_003130498.1|	-	0.058	13.4	0.7	2.8	8.0	0.1	2.1	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
DUF2082	PF09855.4	gi|257052665|ref|YP_003130498.1|	-	0.059	13.2	1.1	1	9.2	0.1	2.0	2	0	0	2	2	2	0	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
A2L_zn_ribbon	PF08792.5	gi|257052665|ref|YP_003130498.1|	-	0.062	12.7	2.9	2.2	7.8	0.2	2.2	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
Rubredoxin	PF00301.15	gi|257052665|ref|YP_003130498.1|	-	0.12	12.2	0.8	3.2	7.7	0.1	2.1	2	0	0	2	2	2	0	Rubredoxin
ZZ	PF00569.12	gi|257052665|ref|YP_003130498.1|	-	0.12	11.8	1.2	7.4	6.2	0.1	2.1	2	0	0	2	2	2	0	Zinc	finger,	ZZ	type
GATA	PF00320.22	gi|257052665|ref|YP_003130498.1|	-	0.22	10.9	2.0	0.73	9.2	1.4	1.9	1	1	0	1	1	1	0	GATA	zinc	finger
RecR	PF02132.10	gi|257052665|ref|YP_003130498.1|	-	0.25	10.8	2.0	9.6	5.7	0.1	2.1	2	0	0	2	2	2	0	RecR	protein
zf-HIT	PF04438.11	gi|257052665|ref|YP_003130498.1|	-	0.27	10.9	2.2	2.4	7.9	0.1	2.1	2	0	0	2	2	2	0	HIT	zinc	finger
zf-RanBP	PF00641.13	gi|257052665|ref|YP_003130498.1|	-	0.34	10.0	5.6	1.2	8.3	1.2	2.1	2	0	0	2	2	2	0	Zn-finger	in	Ran	binding	protein	and	others
PADR1	PF08063.7	gi|257052665|ref|YP_003130498.1|	-	0.4	10.1	2.1	1.1	8.7	0.0	2.0	1	1	1	2	2	2	0	PADR1	(NUC008)	domain
OrfB_Zn_ribbon	PF07282.6	gi|257052665|ref|YP_003130498.1|	-	0.45	10.1	2.9	2.1	8.0	0.1	2.0	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
Nudix_N_2	PF14803.1	gi|257052665|ref|YP_003130498.1|	-	0.51	10.0	2.3	4.2	7.1	0.2	2.1	2	0	0	2	2	2	0	Nudix	N-terminal
DUF4379	PF14311.1	gi|257052665|ref|YP_003130498.1|	-	0.52	10.1	3.0	1.1	9.1	2.1	1.5	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4379)
Prim_Zn_Ribbon	PF08273.7	gi|257052665|ref|YP_003130498.1|	-	4.4	7.4	5.4	11	6.1	0.5	2.1	2	0	0	2	2	2	0	Zinc-binding	domain	of	primase-helicase
TFIIS_C	PF01096.13	gi|257052665|ref|YP_003130498.1|	-	5	6.8	8.3	9.7	5.9	0.9	2.7	2	1	1	3	3	3	0	Transcription	factor	S-II	(TFIIS)
HATPase_c	PF02518.21	gi|257052666|ref|YP_003130499.1|	-	3.9e-16	58.7	2.2	2.6e-15	56.0	0.9	2.5	2	1	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.20	gi|257052666|ref|YP_003130499.1|	-	1.7e-12	47.1	2.7	3.6e-12	46.0	1.9	1.6	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_4	PF08448.5	gi|257052666|ref|YP_003130499.1|	-	2.5e-07	30.6	1.4	7.4e-06	25.9	1.0	2.8	1	1	0	1	1	1	1	PAS	fold
PAS_9	PF13426.1	gi|257052666|ref|YP_003130499.1|	-	0.0031	17.8	0.3	0.018	15.4	0.1	2.4	2	1	0	2	2	2	1	PAS	domain
PAS_8	PF13188.1	gi|257052666|ref|YP_003130499.1|	-	0.0071	16.1	0.2	0.033	14.0	0.0	2.2	2	0	0	2	2	2	1	PAS	domain
HATPase_c_3	PF13589.1	gi|257052666|ref|YP_003130499.1|	-	0.02	14.5	0.0	0.048	13.3	0.0	1.6	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
DUF4424	PF14415.1	gi|257052666|ref|YP_003130499.1|	-	0.049	13.1	0.0	0.075	12.5	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4424)
TMCO5	PF14992.1	gi|257052666|ref|YP_003130499.1|	-	0.054	12.6	0.6	0.084	12.0	0.4	1.2	1	0	0	1	1	1	0	TMCO5	family
PAS	PF00989.19	gi|257052666|ref|YP_003130499.1|	-	0.083	12.6	0.1	4.9	6.9	0.0	2.6	2	0	0	2	2	2	0	PAS	fold
PBP_like_2	PF12849.2	gi|257052667|ref|YP_003130500.1|	-	7.8e-40	137.1	1.7	1.2e-39	136.4	1.2	1.3	1	0	0	1	1	1	1	PBP	superfamily	domain
PBP_like	PF12727.2	gi|257052667|ref|YP_003130500.1|	-	2.4e-08	33.1	0.1	4e-08	32.4	0.0	1.3	1	0	0	1	1	1	1	PBP	superfamily	domain
TAT_signal	PF10518.4	gi|257052667|ref|YP_003130500.1|	-	0.079	12.9	3.8	0.13	12.2	2.6	1.4	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
BPD_transp_1	PF00528.17	gi|257052668|ref|YP_003130501.1|	-	5.2e-17	61.9	11.2	5.2e-17	61.9	7.7	2.7	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
Methyltrn_RNA_4	PF09936.4	gi|257052668|ref|YP_003130501.1|	-	0.32	10.4	1.3	0.95	8.9	0.2	2.0	2	0	0	2	2	2	0	SAM-dependent	RNA	methyltransferase
BPD_transp_1	PF00528.17	gi|257052669|ref|YP_003130502.1|	-	2.5e-19	69.5	11.2	2.5e-19	69.5	7.8	5.9	2	1	4	6	6	6	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF3703	PF12487.3	gi|257052669|ref|YP_003130502.1|	-	0.13	11.9	0.1	0.25	11.0	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3703)
ABC_tran	PF00005.22	gi|257052670|ref|YP_003130503.1|	-	8.5e-32	110.3	0.0	1.4e-31	109.6	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|257052670|ref|YP_003130503.1|	-	1.1e-13	51.8	0.0	1.2e-10	41.8	0.0	2.2	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|257052670|ref|YP_003130503.1|	-	2.6e-09	36.6	0.2	6.6e-08	32.0	0.2	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.1	gi|257052670|ref|YP_003130503.1|	-	1.5e-06	27.5	0.0	0.043	12.8	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_22	PF13401.1	gi|257052670|ref|YP_003130503.1|	-	1.1e-05	25.5	0.0	5.3e-05	23.3	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|257052670|ref|YP_003130503.1|	-	0.00019	20.8	0.0	0.00049	19.5	0.0	1.6	2	0	0	2	2	1	1	P-loop	containing	region	of	AAA	domain
DUF258	PF03193.11	gi|257052670|ref|YP_003130503.1|	-	0.00029	20.0	0.0	0.00059	19.0	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_16	PF13191.1	gi|257052670|ref|YP_003130503.1|	-	0.00032	20.7	1.7	0.019	14.9	0.0	2.2	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_23	PF13476.1	gi|257052670|ref|YP_003130503.1|	-	0.00096	19.5	0.0	0.0024	18.2	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_25	PF13481.1	gi|257052670|ref|YP_003130503.1|	-	0.0015	17.9	0.1	0.01	15.2	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_17	PF13207.1	gi|257052670|ref|YP_003130503.1|	-	0.0024	18.6	0.4	0.014	16.2	0.3	2.3	1	1	0	1	1	1	1	AAA	domain
DeoRC	PF00455.17	gi|257052670|ref|YP_003130503.1|	-	0.0043	16.6	0.0	0.0073	15.9	0.0	1.3	1	0	0	1	1	1	1	DeoR	C	terminal	sensor	domain
AAA_33	PF13671.1	gi|257052670|ref|YP_003130503.1|	-	0.0061	16.4	0.1	0.024	14.5	0.0	1.8	2	1	0	2	2	1	1	AAA	domain
AAA_19	PF13245.1	gi|257052670|ref|YP_003130503.1|	-	0.011	15.4	0.0	6.7	6.5	0.0	2.7	2	0	0	2	2	2	0	Part	of	AAA	domain
AAA_18	PF13238.1	gi|257052670|ref|YP_003130503.1|	-	0.014	15.6	0.0	0.043	14.1	0.0	1.9	2	1	0	2	2	1	0	AAA	domain
AAA	PF00004.24	gi|257052670|ref|YP_003130503.1|	-	0.024	14.8	0.0	0.18	11.9	0.0	2.3	3	1	0	3	3	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_10	PF12846.2	gi|257052670|ref|YP_003130503.1|	-	0.031	13.6	0.2	0.068	12.5	0.1	1.7	1	1	0	1	1	1	0	AAA-like	domain
Rad17	PF03215.10	gi|257052670|ref|YP_003130503.1|	-	0.032	12.9	0.0	0.047	12.3	0.0	1.2	1	0	0	1	1	1	0	Rad17	cell	cycle	checkpoint	protein
MMR_HSR1	PF01926.18	gi|257052670|ref|YP_003130503.1|	-	0.033	14.1	0.0	0.11	12.5	0.0	1.8	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
cobW	PF02492.14	gi|257052670|ref|YP_003130503.1|	-	0.04	13.3	0.1	0.25	10.7	0.0	2.0	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
RNA_helicase	PF00910.17	gi|257052670|ref|YP_003130503.1|	-	0.044	13.9	0.0	0.15	12.2	0.0	1.9	2	0	0	2	2	1	0	RNA	helicase
Adeno_IVa2	PF02456.10	gi|257052670|ref|YP_003130503.1|	-	0.047	12.3	0.0	0.65	8.5	0.0	2.0	2	0	0	2	2	2	0	Adenovirus	IVa2	protein
Arch_ATPase	PF01637.13	gi|257052670|ref|YP_003130503.1|	-	0.051	13.2	0.0	0.21	11.2	0.0	1.9	2	0	0	2	2	2	0	Archaeal	ATPase
MobB	PF03205.9	gi|257052670|ref|YP_003130503.1|	-	0.052	13.2	0.1	0.4	10.3	0.0	2.3	3	0	0	3	3	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
NACHT	PF05729.7	gi|257052670|ref|YP_003130503.1|	-	0.055	13.1	0.0	0.11	12.1	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
AAA_28	PF13521.1	gi|257052670|ref|YP_003130503.1|	-	0.059	13.3	0.0	0.23	11.4	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_30	PF13604.1	gi|257052670|ref|YP_003130503.1|	-	0.059	12.9	0.0	0.77	9.3	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
PRK	PF00485.13	gi|257052670|ref|YP_003130503.1|	-	0.078	12.5	0.0	0.15	11.6	0.0	1.5	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
AAA_14	PF13173.1	gi|257052670|ref|YP_003130503.1|	-	0.1	12.5	0.0	0.25	11.2	0.0	1.7	2	0	0	2	2	1	0	AAA	domain
AAA_5	PF07728.9	gi|257052670|ref|YP_003130503.1|	-	0.1	12.3	0.0	0.22	11.2	0.0	1.5	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
NYN_YacP	PF05991.6	gi|257052670|ref|YP_003130503.1|	-	0.11	12.2	0.1	0.21	11.3	0.0	1.4	1	0	0	1	1	1	0	YacP-like	NYN	domain
G-alpha	PF00503.15	gi|257052670|ref|YP_003130503.1|	-	0.11	11.1	0.0	0.11	11.1	0.0	1.3	1	1	0	1	1	1	0	G-protein	alpha	subunit
NB-ARC	PF00931.17	gi|257052670|ref|YP_003130503.1|	-	0.12	11.2	0.0	0.16	10.7	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
Miro	PF08477.8	gi|257052670|ref|YP_003130503.1|	-	0.13	12.7	0.0	0.29	11.6	0.0	1.6	1	0	0	1	1	1	0	Miro-like	protein
PPV_E1_C	PF00519.12	gi|257052670|ref|YP_003130503.1|	-	0.13	10.8	0.0	0.2	10.2	0.0	1.1	1	0	0	1	1	1	0	Papillomavirus	helicase
AAA_13	PF13166.1	gi|257052670|ref|YP_003130503.1|	-	0.17	10.3	0.0	4.6	5.5	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
PhoU	PF01895.14	gi|257052671|ref|YP_003130504.1|	-	3e-33	114.1	10.7	8.7e-18	64.5	0.9	2.1	2	0	0	2	2	2	2	PhoU	domain
Antitoxin-MazE	PF04014.13	gi|257052672|ref|YP_003130505.1|	-	2e-06	27.3	0.0	4.4e-06	26.2	0.0	1.5	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
DUF21	PF01595.15	gi|257052673|ref|YP_003130506.1|	-	1.5e-33	115.6	0.4	1.9e-33	115.2	0.3	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF21
CBS	PF00571.23	gi|257052673|ref|YP_003130506.1|	-	2.8e-13	49.4	0.3	4.8e-10	39.0	0.1	2.3	2	0	0	2	2	2	2	CBS	domain
Radical_SAM	PF04055.16	gi|257052674|ref|YP_003130507.1|	-	1.5e-22	80.5	0.0	1.9e-22	80.2	0.0	1.1	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_14	PF13394.1	gi|257052674|ref|YP_003130507.1|	-	2.1e-14	53.5	0.0	3.3e-14	52.9	0.0	1.2	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.1	gi|257052674|ref|YP_003130507.1|	-	1.3e-13	51.3	0.0	1.7e-13	50.8	0.0	1.2	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
CcmH	PF03918.9	gi|257052674|ref|YP_003130507.1|	-	0.17	10.8	0.1	0.27	10.2	0.0	1.2	1	0	0	1	1	1	0	Cytochrome	C	biogenesis	protein
NRDD	PF13597.1	gi|257052675|ref|YP_003130508.1|	-	2.7e-206	685.8	0.0	3.2e-206	685.6	0.0	1.0	1	0	0	1	1	1	1	Anaerobic	ribonucleoside-triphosphate	reductase
ATP-cone	PF03477.11	gi|257052675|ref|YP_003130508.1|	-	2.2e-23	82.5	0.5	5.2e-23	81.2	0.1	1.9	2	0	0	2	2	2	1	ATP	cone	domain
Ribosomal_L32p	PF01783.18	gi|257052675|ref|YP_003130508.1|	-	0.45	10.7	1.6	0.87	9.8	1.1	1.3	1	0	0	1	1	1	0	Ribosomal	L32p	protein	family
VWA_2	PF13519.1	gi|257052678|ref|YP_003130511.1|	-	1.4e-32	113.1	2.2	1.4e-32	113.1	1.5	2.3	3	0	0	3	3	3	1	von	Willebrand	factor	type	A	domain
VWA	PF00092.23	gi|257052678|ref|YP_003130511.1|	-	5.6e-25	88.0	0.1	1.1e-24	87.1	0.0	1.5	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA_3	PF13768.1	gi|257052678|ref|YP_003130511.1|	-	2.4e-10	40.2	0.3	8.4e-10	38.5	0.0	2.0	2	0	0	2	2	2	1	von	Willebrand	factor	type	A	domain
DUF2201	PF09967.4	gi|257052678|ref|YP_003130511.1|	-	0.0079	16.2	0.5	0.38	10.7	0.0	2.6	2	0	0	2	2	2	1	VWA-like	domain	(DUF2201)
DUF4398	PF14346.1	gi|257052678|ref|YP_003130511.1|	-	0.14	12.2	3.5	0.34	10.9	2.4	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4398)
RIO1	PF01163.17	gi|257052679|ref|YP_003130512.1|	-	2.5e-58	196.5	0.1	9.1e-58	194.7	0.0	1.7	2	0	0	2	2	2	1	RIO1	family
APH	PF01636.18	gi|257052679|ref|YP_003130512.1|	-	2.9e-08	33.7	0.2	1.8e-06	27.8	0.0	2.5	1	1	1	2	2	2	1	Phosphotransferase	enzyme	family
Kdo	PF06293.9	gi|257052679|ref|YP_003130512.1|	-	8.6e-07	28.2	0.1	4.3e-06	25.9	0.1	1.9	1	1	0	1	1	1	1	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
Pkinase	PF00069.20	gi|257052679|ref|YP_003130512.1|	-	0.00052	19.2	0.0	0.00083	18.5	0.0	1.3	1	0	0	1	1	1	1	Protein	kinase	domain
WaaY	PF06176.6	gi|257052679|ref|YP_003130512.1|	-	0.0019	17.4	0.0	0.003	16.7	0.0	1.3	1	0	0	1	1	1	1	Lipopolysaccharide	core	biosynthesis	protein	(WaaY)
eIF-1a	PF01176.14	gi|257052680|ref|YP_003130513.1|	-	5.3e-28	96.2	0.8	6.6e-28	95.9	0.5	1.1	1	0	0	1	1	1	1	Translation	initiation	factor	1A	/	IF-1
Glyco_hydro_3	PF00933.16	gi|257052681|ref|YP_003130514.1|	-	3.1e-81	272.6	0.0	4.3e-81	272.1	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	N	terminal	domain
Glyco_hydro_3_C	PF01915.17	gi|257052681|ref|YP_003130514.1|	-	2.1e-66	223.7	0.2	4.5e-66	222.6	0.2	1.6	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	C-terminal	domain
Fn3-like	PF14310.1	gi|257052681|ref|YP_003130514.1|	-	5.5e-22	77.4	0.3	1.5e-21	76.0	0.1	1.9	2	0	0	2	2	2	1	Fibronectin	type	III-like	domain
DUF4232	PF14016.1	gi|257052681|ref|YP_003130514.1|	-	0.012	15.2	0.2	0.026	14.1	0.1	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4232)
DUF2163	PF09931.4	gi|257052681|ref|YP_003130514.1|	-	0.074	12.8	0.1	0.16	11.7	0.0	1.6	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2163)
CARDB	PF07705.6	gi|257052681|ref|YP_003130514.1|	-	0.1	12.6	0.0	0.24	11.4	0.0	1.6	1	0	0	1	1	1	0	CARDB
Cys_Met_Meta_PP	PF01053.15	gi|257052682|ref|YP_003130515.1|	-	4.1e-138	459.8	0.0	4.7e-138	459.6	0.0	1.0	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
DegT_DnrJ_EryC1	PF01041.12	gi|257052682|ref|YP_003130515.1|	-	1.9e-09	37.0	0.2	3.2e-09	36.3	0.2	1.3	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Aminotran_1_2	PF00155.16	gi|257052682|ref|YP_003130515.1|	-	7.7e-09	34.9	0.0	1e-08	34.5	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Aminotran_5	PF00266.14	gi|257052682|ref|YP_003130515.1|	-	5.9e-07	28.5	0.0	1e-06	27.7	0.0	1.3	1	0	0	1	1	1	1	Aminotransferase	class-V
Beta_elim_lyase	PF01212.16	gi|257052682|ref|YP_003130515.1|	-	0.002	17.3	0.1	0.0033	16.6	0.0	1.5	1	1	0	1	1	1	1	Beta-eliminating	lyase
SLA_LP_auto_ag	PF05889.8	gi|257052682|ref|YP_003130515.1|	-	0.0045	15.5	0.0	0.0067	14.9	0.0	1.2	1	0	0	1	1	1	1	Soluble	liver	antigen/liver	pancreas	antigen	(SLA/LP	autoantigen)
TPP_enzyme_N	PF02776.13	gi|257052682|ref|YP_003130515.1|	-	0.0098	15.4	0.4	1.7	8.1	0.1	2.5	2	0	0	2	2	2	2	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
Peptidase_C15	PF01470.12	gi|257052682|ref|YP_003130515.1|	-	0.13	12.0	0.0	0.22	11.3	0.0	1.4	1	0	0	1	1	1	0	Pyroglutamyl	peptidase
DUF4282	PF14110.1	gi|257052683|ref|YP_003130516.1|	-	4	7.6	8.3	5.2	7.3	5.8	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4282)
DNA_pol_E_B	PF04042.11	gi|257052684|ref|YP_003130517.1|	-	8.6e-15	54.5	0.0	1.3e-14	53.9	0.0	1.2	1	0	0	1	1	1	1	DNA	polymerase	alpha/epsilon	subunit	B
Metallophos_2	PF12850.2	gi|257052684|ref|YP_003130517.1|	-	4.4e-12	46.1	3.4	1.5e-11	44.3	2.3	1.8	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.23	gi|257052684|ref|YP_003130517.1|	-	1.6e-06	27.6	5.2	7.9e-06	25.3	3.6	2.1	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
tRNA_anti-codon	PF01336.20	gi|257052684|ref|YP_003130517.1|	-	0.016	15.0	0.0	0.043	13.6	0.0	1.8	1	0	0	1	1	1	0	OB-fold	nucleic	acid	binding	domain
CoA_binding_2	PF13380.1	gi|257052684|ref|YP_003130517.1|	-	0.045	13.9	0.1	0.19	11.9	0.0	1.9	2	0	0	2	2	2	0	CoA	binding	domain
Peptidase_S24	PF00717.18	gi|257052685|ref|YP_003130518.1|	-	0.0079	15.8	0.9	0.06	13.0	0.6	2.1	1	1	0	1	1	1	1	Peptidase	S24-like
Peptidase_S24	PF00717.18	gi|257052686|ref|YP_003130519.1|	-	0.0016	18.0	0.2	0.004	16.7	0.1	1.7	1	1	0	1	1	1	1	Peptidase	S24-like
Cdc6_C	PF09079.6	gi|257052687|ref|YP_003130520.1|	-	1.1e-28	98.7	0.1	2.7e-28	97.5	0.1	1.7	1	0	0	1	1	1	1	CDC6,	C	terminal
AAA_16	PF13191.1	gi|257052687|ref|YP_003130520.1|	-	4.8e-13	49.5	4.8	9.3e-12	45.2	0.0	2.8	3	0	0	3	3	3	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|257052687|ref|YP_003130520.1|	-	1.8e-09	37.7	0.1	3e-08	33.8	0.0	2.4	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.24	gi|257052687|ref|YP_003130520.1|	-	3.3e-08	33.8	0.0	0.0034	17.5	0.0	2.5	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
Arch_ATPase	PF01637.13	gi|257052687|ref|YP_003130520.1|	-	0.00077	19.2	0.1	0.002	17.8	0.1	1.7	1	1	0	1	1	1	1	Archaeal	ATPase
AAA_17	PF13207.1	gi|257052687|ref|YP_003130520.1|	-	0.00079	20.2	0.6	0.0025	18.6	0.0	2.2	2	1	0	2	2	2	1	AAA	domain
Sigma54_activat	PF00158.21	gi|257052687|ref|YP_003130520.1|	-	0.0016	17.9	0.0	0.004	16.6	0.0	1.6	1	0	0	1	1	1	1	Sigma-54	interaction	domain
T2SE	PF00437.15	gi|257052687|ref|YP_003130520.1|	-	0.002	17.0	0.0	0.0034	16.3	0.0	1.3	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
DUF815	PF05673.8	gi|257052687|ref|YP_003130520.1|	-	0.0035	16.2	0.0	0.0068	15.3	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
AAA_18	PF13238.1	gi|257052687|ref|YP_003130520.1|	-	0.0037	17.5	0.1	0.014	15.7	0.0	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_2	PF07724.9	gi|257052687|ref|YP_003130520.1|	-	0.0065	16.4	0.0	0.034	14.0	0.0	2.0	1	1	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
RuvB_N	PF05496.7	gi|257052687|ref|YP_003130520.1|	-	0.0071	15.4	0.0	0.017	14.1	0.0	1.5	1	0	0	1	1	1	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
FtsK_SpoIIIE	PF01580.13	gi|257052687|ref|YP_003130520.1|	-	0.033	13.6	0.2	0.45	9.9	0.0	2.2	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
AAA_32	PF13654.1	gi|257052687|ref|YP_003130520.1|	-	0.05	12.2	0.7	0.97	8.0	0.0	2.4	2	1	0	2	2	2	0	AAA	domain
AAA_24	PF13479.1	gi|257052687|ref|YP_003130520.1|	-	0.053	13.0	0.3	0.11	12.0	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
ABC_tran	PF00005.22	gi|257052687|ref|YP_003130520.1|	-	0.057	13.7	0.0	0.15	12.3	0.0	1.9	1	1	0	1	1	1	0	ABC	transporter
NB-ARC	PF00931.17	gi|257052687|ref|YP_003130520.1|	-	0.059	12.2	0.0	0.095	11.5	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
MutS_III	PF05192.13	gi|257052687|ref|YP_003130520.1|	-	0.16	11.7	2.4	1.5	8.5	1.7	2.2	1	1	0	1	1	1	0	MutS	domain	III
DEAD	PF00270.24	gi|257052687|ref|YP_003130520.1|	-	0.17	11.3	4.7	0.68	9.4	0.7	2.8	2	1	0	2	2	2	0	DEAD/DEAH	box	helicase
AAA_23	PF13476.1	gi|257052687|ref|YP_003130520.1|	-	8.2	6.6	9.5	8.4	6.6	1.0	2.5	1	1	1	2	2	2	0	AAA	domain
MMR_HSR1	PF01926.18	gi|257052689|ref|YP_003130522.1|	-	8.3e-15	54.7	0.0	1.1e-14	54.3	0.0	1.2	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
GTP_EFTU	PF00009.22	gi|257052689|ref|YP_003130522.1|	-	3.7e-12	46.0	0.1	9.8e-06	25.1	0.0	2.8	2	2	0	2	2	2	2	Elongation	factor	Tu	GTP	binding	domain
Arf	PF00025.16	gi|257052689|ref|YP_003130522.1|	-	5.7e-08	32.1	0.0	6.1e-05	22.3	0.0	2.7	2	1	1	3	3	3	2	ADP-ribosylation	factor	family
AAA_17	PF13207.1	gi|257052689|ref|YP_003130522.1|	-	1.8e-05	25.5	0.2	3.6e-05	24.5	0.1	1.8	1	1	0	1	1	1	1	AAA	domain
FeoB_N	PF02421.13	gi|257052689|ref|YP_003130522.1|	-	6.9e-05	22.1	0.1	0.00064	19.0	0.1	2.3	1	1	0	1	1	1	1	Ferrous	iron	transport	protein	B
Miro	PF08477.8	gi|257052689|ref|YP_003130522.1|	-	0.0001	22.7	0.0	0.00027	21.4	0.0	1.7	1	1	0	1	1	1	1	Miro-like	protein
AAA_18	PF13238.1	gi|257052689|ref|YP_003130522.1|	-	0.00025	21.3	0.0	0.00046	20.4	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
SRPRB	PF09439.5	gi|257052689|ref|YP_003130522.1|	-	0.00074	18.7	0.0	0.17	11.0	0.0	2.2	2	0	0	2	2	2	1	Signal	recognition	particle	receptor	beta	subunit
AAA_28	PF13521.1	gi|257052689|ref|YP_003130522.1|	-	0.00084	19.3	0.1	0.068	13.1	0.0	2.2	1	1	1	2	2	2	1	AAA	domain
Septin	PF00735.13	gi|257052689|ref|YP_003130522.1|	-	0.00092	18.3	0.0	0.0016	17.4	0.0	1.4	2	0	0	2	2	2	1	Septin
AAA_16	PF13191.1	gi|257052689|ref|YP_003130522.1|	-	0.0014	18.6	0.0	0.0022	18.0	0.0	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|257052689|ref|YP_003130522.1|	-	0.0022	18.1	0.0	0.0042	17.2	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
Dynamin_N	PF00350.18	gi|257052689|ref|YP_003130522.1|	-	0.0028	17.4	0.0	0.33	10.7	0.0	2.3	1	1	1	2	2	2	1	Dynamin	family
AAA	PF00004.24	gi|257052689|ref|YP_003130522.1|	-	0.0042	17.3	0.0	0.021	15.0	0.0	2.0	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_19	PF13245.1	gi|257052689|ref|YP_003130522.1|	-	0.0044	16.7	0.2	0.03	14.0	0.0	2.2	2	0	0	2	2	2	1	Part	of	AAA	domain
NB-ARC	PF00931.17	gi|257052689|ref|YP_003130522.1|	-	0.0066	15.3	0.0	0.015	14.1	0.0	1.5	2	0	0	2	2	2	1	NB-ARC	domain
Zeta_toxin	PF06414.7	gi|257052689|ref|YP_003130522.1|	-	0.0085	15.2	0.0	0.023	13.7	0.0	1.7	2	0	0	2	2	2	1	Zeta	toxin
RNA_helicase	PF00910.17	gi|257052689|ref|YP_003130522.1|	-	0.012	15.7	0.0	0.024	14.7	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
cobW	PF02492.14	gi|257052689|ref|YP_003130522.1|	-	0.019	14.4	0.0	3.3	7.1	0.0	2.3	2	1	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
ABC_tran	PF00005.22	gi|257052689|ref|YP_003130522.1|	-	0.047	14.0	0.0	0.076	13.3	0.0	1.5	1	1	0	1	1	1	0	ABC	transporter
AAA_14	PF13173.1	gi|257052689|ref|YP_003130522.1|	-	0.048	13.5	0.0	0.076	12.9	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
Arch_ATPase	PF01637.13	gi|257052689|ref|YP_003130522.1|	-	0.056	13.1	0.0	0.077	12.6	0.0	1.6	1	1	0	1	1	1	0	Archaeal	ATPase
NACHT	PF05729.7	gi|257052689|ref|YP_003130522.1|	-	0.06	13.0	0.0	0.097	12.3	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
RuvB_N	PF05496.7	gi|257052689|ref|YP_003130522.1|	-	0.062	12.3	0.0	0.1	11.5	0.0	1.3	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	ruvB	N-terminus
MMR_HSR1_C	PF08438.5	gi|257052689|ref|YP_003130522.1|	-	0.064	13.4	0.0	0.19	11.9	0.0	1.7	2	0	0	2	2	2	0	GTPase	of	unknown	function	C-terminal
AAA_25	PF13481.1	gi|257052689|ref|YP_003130522.1|	-	0.07	12.5	0.1	0.16	11.3	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
MobB	PF03205.9	gi|257052689|ref|YP_003130522.1|	-	0.079	12.6	0.0	0.24	11.1	0.0	1.8	1	1	1	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
ArgK	PF03308.11	gi|257052689|ref|YP_003130522.1|	-	0.087	11.5	0.0	0.98	8.1	0.0	2.4	2	1	0	2	2	2	0	ArgK	protein
AAA_24	PF13479.1	gi|257052689|ref|YP_003130522.1|	-	0.12	11.9	0.3	0.21	11.1	0.2	1.7	1	1	0	1	1	1	0	AAA	domain
Parvo_NS1	PF01057.12	gi|257052689|ref|YP_003130522.1|	-	0.14	11.0	0.0	0.23	10.3	0.0	1.2	1	0	0	1	1	1	0	Parvovirus	non-structural	protein	NS1
DUF2073	PF09846.4	gi|257052690|ref|YP_003130523.1|	-	2.4e-48	162.1	1.0	3e-48	161.7	0.7	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2073)
DUF2072	PF09845.4	gi|257052691|ref|YP_003130524.1|	-	1.7e-27	95.9	2.8	4e-13	49.4	0.5	2.4	2	1	0	2	2	2	2	Zn-ribbon	containing	protein	(DUF2072)
DUF1451	PF07295.6	gi|257052691|ref|YP_003130524.1|	-	0.081	12.6	1.6	0.33	10.7	0.7	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1451)
TF_Zn_Ribbon	PF08271.7	gi|257052691|ref|YP_003130524.1|	-	4.7	6.6	6.0	3	7.2	0.1	2.8	2	1	1	3	3	3	0	TFIIB	zinc-binding
DUF296	PF03479.10	gi|257052692|ref|YP_003130525.1|	-	6.9e-26	90.2	0.0	7.8e-26	90.0	0.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF296)
PolC_DP2	PF03833.8	gi|257052693|ref|YP_003130526.1|	-	0	1321.2	0.1	0	1320.8	0.1	1.2	1	0	0	1	1	1	1	DNA	polymerase	II	large	subunit	DP2
DZR	PF12773.2	gi|257052693|ref|YP_003130526.1|	-	5.4	6.9	18.0	24	4.8	0.2	3.2	2	1	0	2	2	2	0	Double	zinc	ribbon
DUF4265	PF14085.1	gi|257052695|ref|YP_003130528.1|	-	0.0021	17.7	0.0	0.0025	17.5	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4265)
TRAM	PF01938.15	gi|257052696|ref|YP_003130529.1|	-	2.6e-10	39.9	0.5	2.6e-10	39.9	0.4	1.5	2	0	0	2	2	2	1	TRAM	domain
Nop14	PF04147.7	gi|257052696|ref|YP_003130529.1|	-	2.3	6.0	5.1	2.4	6.0	3.6	1.0	1	0	0	1	1	1	0	Nop14-like	family
adh_short_C2	PF13561.1	gi|257052697|ref|YP_003130530.1|	-	1.2e-27	97.2	0.0	1.5e-27	96.9	0.0	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.20	gi|257052697|ref|YP_003130530.1|	-	1.6e-21	76.9	3.3	2.2e-21	76.4	2.3	1.3	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.5	gi|257052697|ref|YP_003130530.1|	-	2.7e-09	36.9	0.5	4e-09	36.4	0.3	1.2	1	0	0	1	1	1	1	KR	domain
NAD_binding_10	PF13460.1	gi|257052697|ref|YP_003130530.1|	-	0.00052	20.0	1.2	0.00079	19.4	0.8	1.3	1	0	0	1	1	1	1	NADH(P)-binding
Epimerase	PF01370.16	gi|257052697|ref|YP_003130530.1|	-	0.015	14.7	0.0	0.024	14.0	0.0	1.2	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
Shikimate_DH	PF01488.15	gi|257052697|ref|YP_003130530.1|	-	0.035	14.1	0.0	1.8	8.6	0.0	2.3	2	0	0	2	2	2	0	Shikimate	/	quinate	5-dehydrogenase
ADH_zinc_N	PF00107.21	gi|257052697|ref|YP_003130530.1|	-	0.047	13.2	0.2	0.096	12.2	0.1	1.6	1	0	0	1	1	1	0	Zinc-binding	dehydrogenase
Nitro_FeMo-Co	PF02579.12	gi|257052697|ref|YP_003130530.1|	-	0.073	13.1	0.4	15	5.7	0.1	3.0	2	1	1	3	3	3	0	Dinitrogenase	iron-molybdenum	cofactor
Saccharop_dh	PF03435.13	gi|257052697|ref|YP_003130530.1|	-	0.098	11.6	0.0	0.14	11.1	0.0	1.2	1	0	0	1	1	1	0	Saccharopine	dehydrogenase
ETF	PF01012.16	gi|257052697|ref|YP_003130530.1|	-	0.86	9.3	6.0	0.57	9.8	2.8	1.6	2	0	0	2	2	2	0	Electron	transfer	flavoprotein	domain
Claudin_2	PF13903.1	gi|257052698|ref|YP_003130531.1|	-	0.036	13.7	1.7	0.044	13.4	1.2	1.0	1	0	0	1	1	1	0	PMP-22/EMP/MP20/Claudin	tight	junction
DUF805	PF05656.9	gi|257052698|ref|YP_003130531.1|	-	0.19	11.5	3.8	0.26	11.1	2.7	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF805)
DUF4401	PF14351.1	gi|257052698|ref|YP_003130531.1|	-	0.41	9.5	6.1	0.43	9.5	4.2	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4401)
DUF4131	PF13567.1	gi|257052698|ref|YP_003130531.1|	-	0.43	9.9	4.1	0.56	9.6	2.8	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
MARVEL	PF01284.18	gi|257052698|ref|YP_003130531.1|	-	0.88	9.3	6.4	1.1	9.0	4.4	1.1	1	0	0	1	1	1	0	Membrane-associating	domain
7TMR-DISM_7TM	PF07695.6	gi|257052698|ref|YP_003130531.1|	-	0.98	9.0	8.0	1.7	8.2	5.5	1.4	1	1	0	1	1	1	0	7TM	diverse	intracellular	signalling
CopD	PF05425.8	gi|257052698|ref|YP_003130531.1|	-	1	9.6	7.3	1.2	9.3	5.0	1.0	1	0	0	1	1	1	0	Copper	resistance	protein	D
Laminin_G_3	PF13385.1	gi|257052699|ref|YP_003130532.1|	-	5.9e-19	68.8	6.4	1.3e-18	67.7	4.2	1.7	2	0	0	2	2	2	1	Concanavalin	A-like	lectin/glucanases	superfamily
DUF1628	PF07790.6	gi|257052699|ref|YP_003130532.1|	-	0.0044	17.7	3.0	0.013	16.2	2.1	1.9	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1628)
Laminin_G_2	PF02210.19	gi|257052699|ref|YP_003130532.1|	-	0.0087	16.1	0.2	0.024	14.7	0.0	1.8	2	0	0	2	2	2	1	Laminin	G	domain
MacB_PCD	PF12704.2	gi|257052699|ref|YP_003130532.1|	-	0.52	9.8	4.8	0.32	10.5	1.3	1.9	1	1	1	2	2	2	0	MacB-like	periplasmic	core	domain
DUF1118	PF06549.7	gi|257052700|ref|YP_003130533.1|	-	2.9	8.0	9.7	0.071	13.2	0.4	2.9	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1118)
ABC_tran	PF00005.22	gi|257052701|ref|YP_003130534.1|	-	1.3e-23	83.8	0.0	1.7e-23	83.4	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|257052701|ref|YP_003130534.1|	-	6.5e-16	59.1	0.0	2.5e-13	50.6	0.0	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_15	PF13175.1	gi|257052701|ref|YP_003130534.1|	-	0.0011	18.0	0.0	0.0099	14.9	0.0	1.9	2	0	0	2	2	2	1	AAA	ATPase	domain
SbcCD_C	PF13558.1	gi|257052701|ref|YP_003130534.1|	-	0.007	16.2	0.0	0.016	15.1	0.0	1.7	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_13	PF13166.1	gi|257052701|ref|YP_003130534.1|	-	0.0071	14.8	0.1	0.56	8.5	0.1	2.0	2	0	0	2	2	2	2	AAA	domain
AAA	PF00004.24	gi|257052701|ref|YP_003130534.1|	-	0.041	14.0	0.2	3.1	7.9	0.1	2.2	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_23	PF13476.1	gi|257052701|ref|YP_003130534.1|	-	0.062	13.6	0.2	0.11	12.7	0.1	1.4	1	0	0	1	1	1	0	AAA	domain
tRNA_anti-codon	PF01336.20	gi|257052703|ref|YP_003130536.1|	-	0.0027	17.5	0.1	0.021	14.6	0.0	2.4	2	0	0	2	2	2	1	OB-fold	nucleic	acid	binding	domain
TMEM171	PF15471.1	gi|257052704|ref|YP_003130537.1|	-	0.056	12.2	0.2	0.073	11.8	0.1	1.1	1	0	0	1	1	1	0	Transmembrane	protein	family	171
MSP	PF01716.13	gi|257052704|ref|YP_003130537.1|	-	0.092	11.7	0.0	0.14	11.1	0.0	1.2	1	0	0	1	1	1	0	Manganese-stabilising	protein	/	photosystem	II	polypeptide
Arch_flagellin	PF01917.11	gi|257052705|ref|YP_003130538.1|	-	5.4e-07	29.4	1.0	5.4e-07	29.4	0.7	2.1	1	1	1	2	2	2	1	Archaebacterial	flagellin
Lumazine_bd	PF12870.2	gi|257052705|ref|YP_003130538.1|	-	2.6e-05	24.2	0.1	0.0002	21.3	0.0	2.4	2	1	0	2	2	2	1	Lumazine-binding	domain
TpcC	PF12642.2	gi|257052705|ref|YP_003130538.1|	-	0.00035	20.2	0.1	0.00051	19.6	0.1	1.2	1	0	0	1	1	1	1	Conjugative	transposon	protein	TcpC
MecA_N	PF05223.6	gi|257052705|ref|YP_003130538.1|	-	0.02	14.9	0.2	0.064	13.3	0.2	1.8	1	1	0	1	1	1	0	NTF2-like	N-terminal	transpeptidase	domain
Lumazine_bd_2	PF12893.2	gi|257052705|ref|YP_003130538.1|	-	0.024	15.1	0.3	0.4	11.2	0.0	2.8	3	1	1	4	4	4	0	Putative	lumazine-binding
RHH_1	PF01402.16	gi|257052706|ref|YP_003130539.1|	-	8.3e-06	25.4	1.8	2e-05	24.2	0.1	2.2	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
DUF641	PF04859.7	gi|257052706|ref|YP_003130539.1|	-	0.0071	16.0	0.2	0.011	15.5	0.1	1.2	1	0	0	1	1	1	1	Plant	protein	of	unknown	function	(DUF641)
DUF3846	PF12957.2	gi|257052706|ref|YP_003130539.1|	-	0.0099	15.5	0.1	0.14	11.8	0.0	2.0	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF3846)
Phage_GP20	PF06810.6	gi|257052706|ref|YP_003130539.1|	-	0.016	14.6	1.8	0.017	14.5	0.3	1.6	2	0	0	2	2	2	0	Phage	minor	structural	protein	GP20
RasGAP_C	PF03836.10	gi|257052706|ref|YP_003130539.1|	-	0.058	13.0	0.1	0.11	12.2	0.1	1.5	1	0	0	1	1	1	0	RasGAP	C-terminus
DUF972	PF06156.8	gi|257052706|ref|YP_003130539.1|	-	0.1	12.9	0.4	0.2	12.0	0.3	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF972)
zf-Mss51	PF13824.1	gi|257052706|ref|YP_003130539.1|	-	0.28	11.0	1.8	1.8	8.5	0.5	2.3	2	0	0	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
DUF1628	PF07790.6	gi|257052709|ref|YP_003130542.1|	-	5.3e-23	81.5	2.7	6.7e-23	81.2	1.4	1.5	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1628)
HNH	PF01844.18	gi|257052710|ref|YP_003130543.1|	-	6e-07	29.2	2.2	6e-07	29.2	1.5	5.6	6	0	0	6	6	6	1	HNH	endonuclease
HNH_2	PF13391.1	gi|257052710|ref|YP_003130543.1|	-	0.0049	16.6	0.8	0.013	15.2	0.6	1.8	1	0	0	1	1	1	1	HNH	endonuclease
zf-C2H2	PF00096.21	gi|257052710|ref|YP_003130543.1|	-	0.033	14.5	1.6	0.033	14.5	1.1	6.8	7	1	0	7	7	7	0	Zinc	finger,	C2H2	type
DUF2318	PF10080.4	gi|257052710|ref|YP_003130543.1|	-	0.034	13.9	0.2	0.034	13.9	0.1	4.0	2	1	2	4	4	4	0	Predicted	membrane	protein	(DUF2318)
C1_1	PF00130.17	gi|257052710|ref|YP_003130543.1|	-	0.049	13.3	0.4	0.049	13.3	0.3	5.1	6	1	1	7	7	7	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
DUF581	PF04570.9	gi|257052710|ref|YP_003130543.1|	-	1.2	8.4	13.7	6.8	6.0	4.0	3.8	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF581)
Ecl1	PF12855.2	gi|257052710|ref|YP_003130543.1|	-	3.3	7.0	12.6	0.41	9.9	2.6	3.1	3	0	0	3	3	3	0	Life-span	regulatory	factor
Spore_YtfJ	PF09579.5	gi|257052711|ref|YP_003130544.1|	-	4.2e-16	58.5	2.3	5.6e-16	58.1	1.6	1.2	1	0	0	1	1	1	1	Sporulation	protein	YtfJ	(Spore_YtfJ)
tRNA-synt_1	PF00133.17	gi|257052712|ref|YP_003130545.1|	-	3.8e-72	243.1	2.6	3e-39	134.5	3.7	5.1	1	1	1	2	2	2	2	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1_2	PF13603.1	gi|257052712|ref|YP_003130545.1|	-	1.4e-59	200.4	0.0	2.3e-59	199.8	0.0	1.3	1	0	0	1	1	1	1	Leucyl-tRNA	synthetase,	Domain	2
tRNA-synt_1g	PF09334.6	gi|257052712|ref|YP_003130545.1|	-	1e-35	123.2	0.0	1.1e-25	90.1	0.0	4.0	3	1	0	3	3	3	2	tRNA	synthetases	class	I	(M)
Anticodon_1	PF08264.8	gi|257052712|ref|YP_003130545.1|	-	1.8e-14	53.7	0.0	3.6e-14	52.7	0.0	1.5	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1f	PF01921.13	gi|257052712|ref|YP_003130545.1|	-	0.0082	14.8	0.0	0.39	9.3	0.0	2.3	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(K)
tRNA-synt_1d	PF00750.14	gi|257052712|ref|YP_003130545.1|	-	0.0099	14.7	0.0	2.6	6.7	0.0	2.3	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(R)
tRNA-synt_1e	PF01406.14	gi|257052712|ref|YP_003130545.1|	-	0.035	13.2	0.0	5.2	6.0	0.0	2.3	2	0	0	2	2	2	0	tRNA	synthetases	class	I	(C)	catalytic	domain
DNA_ligase_ZBD	PF03119.11	gi|257052712|ref|YP_003130545.1|	-	0.075	12.7	6.5	1.8	8.3	0.0	2.8	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
DZR	PF12773.2	gi|257052712|ref|YP_003130545.1|	-	0.15	11.9	5.7	0.9	9.4	0.4	2.8	2	1	0	2	2	2	0	Double	zinc	ribbon
TF_Zn_Ribbon	PF08271.7	gi|257052712|ref|YP_003130545.1|	-	2	7.7	8.3	15	4.9	0.1	3.6	3	0	0	3	3	3	0	TFIIB	zinc-binding
IBR	PF01485.16	gi|257052712|ref|YP_003130545.1|	-	2.6	7.9	5.7	2.6	7.9	0.8	2.8	2	2	1	3	3	3	0	IBR	domain
OCD_Mu_crystall	PF02423.10	gi|257052713|ref|YP_003130546.1|	-	1.3e-82	277.0	5.3	2e-82	276.5	3.7	1.2	1	0	0	1	1	1	1	Ornithine	cyclodeaminase/mu-crystallin	family
DUF1508	PF07411.7	gi|257052714|ref|YP_003130547.1|	-	2.7e-47	157.9	0.0	3.1e-11	42.5	0.0	10.9	11	0	0	11	11	11	10	Domain	of	unknown	function	(DUF1508)
DDE_Tnp_IS240	PF13610.1	gi|257052714|ref|YP_003130547.1|	-	9.8e-05	22.3	4.5	2.1	8.2	0.0	6.2	5	1	2	8	8	8	2	DDE	domain
DUF4010	PF13194.1	gi|257052716|ref|YP_003130549.1|	-	0.048	12.9	0.0	0.058	12.6	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4010)
PQQ_2	PF13360.1	gi|257052717|ref|YP_003130550.1|	-	3.6e-62	209.9	30.8	1.9e-21	76.6	3.6	4.1	1	1	3	4	4	4	4	PQQ-like	domain
PQQ_3	PF13570.1	gi|257052717|ref|YP_003130550.1|	-	3.6e-43	144.6	35.9	5.4e-08	32.8	0.2	8.2	8	0	0	8	8	8	7	PQQ-like	domain
PQQ	PF01011.16	gi|257052717|ref|YP_003130550.1|	-	7.8e-33	110.3	16.6	6.1e-06	25.4	0.1	7.5	7	0	0	7	7	7	6	PQQ	enzyme	repeat
DUF11	PF01345.13	gi|257052717|ref|YP_003130550.1|	-	0.00085	19.3	1.4	0.0016	18.4	0.2	2.1	2	0	0	2	2	2	1	Domain	of	unknown	function	DUF11
NPCBM_assoc	PF10633.4	gi|257052717|ref|YP_003130550.1|	-	0.004	17.1	0.0	0.084	12.9	0.0	2.9	1	1	0	1	1	1	1	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
PKD	PF00801.15	gi|257052718|ref|YP_003130551.1|	-	1.5e-18	66.2	22.6	1.5e-17	63.0	4.6	4.5	3	1	0	3	3	3	2	PKD	domain
DUF3275	PF11679.3	gi|257052718|ref|YP_003130551.1|	-	0.0019	17.9	0.0	1.4	8.4	0.0	3.5	3	0	0	3	3	3	1	Protein	of	unknown	function	(DUF3275)
DUF2345	PF10106.4	gi|257052718|ref|YP_003130551.1|	-	0.0026	17.3	1.7	4.3	6.9	0.1	3.7	3	0	0	3	3	3	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2345)
SelB-wing_1	PF09105.5	gi|257052718|ref|YP_003130551.1|	-	0.039	13.6	1.5	54	3.5	0.0	3.4	3	0	0	3	3	3	0	Elongation	factor	SelB,	winged	helix
SNN_cytoplasm	PF09051.5	gi|257052718|ref|YP_003130551.1|	-	0.082	12.6	0.0	1.1e+02	2.6	0.0	3.6	3	0	0	3	3	3	0	Stannin	cytoplasmic
Abhydrolase_3	PF07859.8	gi|257052719|ref|YP_003130552.1|	-	2.8e-18	66.2	2.5	3e-12	46.5	0.4	2.3	2	0	0	2	2	2	2	alpha/beta	hydrolase	fold
Peptidase_S9	PF00326.16	gi|257052719|ref|YP_003130552.1|	-	2.8e-15	56.1	0.2	1.8e-09	37.1	0.0	2.2	2	0	0	2	2	2	2	Prolyl	oligopeptidase	family
Abhydrolase_5	PF12695.2	gi|257052719|ref|YP_003130552.1|	-	1e-13	51.2	0.9	1.5e-13	50.7	0.6	1.2	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
COesterase	PF00135.23	gi|257052719|ref|YP_003130552.1|	-	3.7e-10	39.1	0.0	8.8e-10	37.9	0.0	1.5	1	1	0	1	1	1	1	Carboxylesterase	family
Peptidase_S15	PF02129.13	gi|257052719|ref|YP_003130552.1|	-	1.9e-05	24.2	0.5	0.14	11.5	0.0	2.3	1	1	1	2	2	2	2	X-Pro	dipeptidyl-peptidase	(S15	family)
Abhydrolase_6	PF12697.2	gi|257052719|ref|YP_003130552.1|	-	5.3e-05	23.2	10.7	0.0002	21.3	7.4	1.8	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_2	PF02230.11	gi|257052719|ref|YP_003130552.1|	-	0.0017	17.8	0.0	0.026	13.9	0.0	2.3	2	1	0	2	2	2	1	Phospholipase/Carboxylesterase
LIP	PF03583.9	gi|257052719|ref|YP_003130552.1|	-	0.023	13.8	2.5	4.1	6.5	0.0	3.0	1	1	2	3	3	3	0	Secretory	lipase
DLH	PF01738.13	gi|257052719|ref|YP_003130552.1|	-	0.082	12.1	0.0	1.3	8.2	0.0	2.6	2	1	0	2	2	2	0	Dienelactone	hydrolase	family
AXE1	PF05448.7	gi|257052719|ref|YP_003130552.1|	-	0.11	10.9	0.2	0.48	8.8	0.1	2.1	2	1	0	2	2	2	0	Acetyl	xylan	esterase	(AXE1)
FSH1	PF03959.8	gi|257052719|ref|YP_003130552.1|	-	0.13	11.6	0.0	0.2	11.0	0.0	1.3	1	0	0	1	1	1	0	Serine	hydrolase	(FSH1)
DUF2920	PF11144.3	gi|257052719|ref|YP_003130552.1|	-	0.19	10.7	0.0	3.2	6.6	0.0	2.4	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2920)
HATPase_c	PF02518.21	gi|257052720|ref|YP_003130553.1|	-	1.9e-19	69.3	0.0	3.6e-19	68.5	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.20	gi|257052720|ref|YP_003130553.1|	-	4.8e-13	48.9	3.8	2.7e-12	46.4	0.4	3.0	3	0	0	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_4	PF08448.5	gi|257052720|ref|YP_003130553.1|	-	3.1e-05	23.9	0.2	0.0015	18.5	0.0	3.2	2	1	1	3	3	3	1	PAS	fold
HATPase_c_3	PF13589.1	gi|257052720|ref|YP_003130553.1|	-	0.00042	19.9	0.0	0.00085	18.9	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Gly-zipper_OmpA	PF13436.1	gi|257052720|ref|YP_003130553.1|	-	4.5	6.9	7.7	10	5.8	5.3	1.5	1	0	0	1	1	1	0	Glycine-zipper	containing	OmpA-like	membrane	domain
Abhydrolase_6	PF12697.2	gi|257052721|ref|YP_003130554.1|	-	1.1e-36	126.8	3.4	1.4e-36	126.5	2.4	1.0	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.15	gi|257052721|ref|YP_003130554.1|	-	4.2e-19	69.0	0.1	1.6e-17	63.8	0.0	2.1	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Abhydrolase_5	PF12695.2	gi|257052721|ref|YP_003130554.1|	-	4.1e-16	59.0	0.0	2e-15	56.8	0.0	1.9	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
Hydrolase_4	PF12146.3	gi|257052721|ref|YP_003130554.1|	-	3.8e-06	26.6	0.1	7.5e-06	25.7	0.1	1.5	1	0	0	1	1	1	1	Putative	lysophospholipase
Ndr	PF03096.9	gi|257052721|ref|YP_003130554.1|	-	0.015	13.8	0.0	0.019	13.4	0.0	1.2	1	0	0	1	1	1	0	Ndr	family
Abhydrolase_4	PF08386.5	gi|257052721|ref|YP_003130554.1|	-	0.034	14.0	0.0	0.23	11.3	0.0	2.1	2	0	0	2	2	2	0	TAP-like	protein
Peptidase_S9	PF00326.16	gi|257052721|ref|YP_003130554.1|	-	0.039	13.1	0.0	0.11	11.7	0.0	1.8	1	1	1	2	2	2	0	Prolyl	oligopeptidase	family
PAF-AH_p_II	PF03403.8	gi|257052721|ref|YP_003130554.1|	-	0.07	11.4	0.0	0.12	10.6	0.0	1.3	1	0	0	1	1	1	0	Platelet-activating	factor	acetylhydrolase,	isoform	II
PCNA_N	PF00705.13	gi|257052722|ref|YP_003130555.1|	-	6e-11	41.9	0.1	1.2e-10	40.9	0.1	1.5	1	0	0	1	1	1	1	Proliferating	cell	nuclear	antigen,	N-terminal	domain
PCNA_C	PF02747.10	gi|257052722|ref|YP_003130555.1|	-	7.2e-07	29.1	0.0	4.7e-06	26.5	0.0	2.1	2	0	0	2	2	2	1	Proliferating	cell	nuclear	antigen,	C-terminal	domain
DNA_pol3_beta	PF00712.14	gi|257052722|ref|YP_003130555.1|	-	0.09	12.6	0.0	13	5.6	0.0	2.4	2	0	0	2	2	2	0	DNA	polymerase	III	beta	subunit,	N-terminal	domain
Sporozoite_P67	PF05642.6	gi|257052723|ref|YP_003130556.1|	-	0.17	9.6	0.2	0.16	9.7	0.1	1.0	1	0	0	1	1	1	0	Sporozoite	P67	surface	antigen
DUF3040	PF11239.3	gi|257052723|ref|YP_003130556.1|	-	1.3	9.0	11.1	66	3.6	6.7	2.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3040)
RskA	PF10099.4	gi|257052723|ref|YP_003130556.1|	-	1.4	8.6	10.8	4.9	6.8	3.9	2.5	1	1	1	2	2	2	0	Anti-sigma-K	factor	rskA
DNA_primase_lrg	PF04104.9	gi|257052724|ref|YP_003130557.1|	-	1e-32	113.4	0.0	1.9e-32	112.5	0.0	1.3	1	1	0	1	1	1	1	Eukaryotic	and	archaeal	DNA	primase,	large	subunit
DUF2374	PF09574.5	gi|257052725|ref|YP_003130558.1|	-	0.12	12.0	1.0	0.12	12.0	0.7	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(Duf2374)
Hjc	PF01870.13	gi|257052726|ref|YP_003130559.1|	-	2.8e-27	94.1	0.0	3.7e-27	93.7	0.0	1.2	1	0	0	1	1	1	1	Archaeal	holliday	junction	resolvase	(hjc)
ABC_tran	PF00005.22	gi|257052727|ref|YP_003130560.1|	-	4.2e-24	85.3	0.0	6.3e-24	84.8	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|257052727|ref|YP_003130560.1|	-	3.6e-10	40.2	0.0	0.00084	19.3	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|257052727|ref|YP_003130560.1|	-	5.8e-05	22.4	0.0	0.0095	15.1	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.1	gi|257052727|ref|YP_003130560.1|	-	8.6e-05	22.9	0.0	0.00011	22.6	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
AAA_13	PF13166.1	gi|257052727|ref|YP_003130560.1|	-	0.0085	14.6	0.0	0.011	14.2	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
DUF258	PF03193.11	gi|257052727|ref|YP_003130560.1|	-	0.023	13.9	0.0	0.034	13.3	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA_29	PF13555.1	gi|257052727|ref|YP_003130560.1|	-	0.073	12.6	0.1	0.13	11.8	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.1	gi|257052727|ref|YP_003130560.1|	-	0.1	12.6	0.0	0.15	12.0	0.0	1.4	1	1	0	1	1	1	0	AAA	ATPase	domain
SbcCD_C	PF13558.1	gi|257052727|ref|YP_003130560.1|	-	0.13	12.2	0.1	0.21	11.5	0.0	1.4	1	0	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_33	PF13671.1	gi|257052727|ref|YP_003130560.1|	-	0.15	11.9	0.1	0.2	11.5	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
Adeno_IVa2	PF02456.10	gi|257052727|ref|YP_003130560.1|	-	0.2	10.2	0.0	0.28	9.7	0.0	1.1	1	0	0	1	1	1	0	Adenovirus	IVa2	protein
ABC2_membrane_3	PF12698.2	gi|257052728|ref|YP_003130561.1|	-	2.6e-11	43.1	1.2	3.4e-11	42.7	0.8	1.1	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.19	gi|257052728|ref|YP_003130561.1|	-	5.6e-09	35.4	6.9	5.6e-09	35.4	4.8	1.7	2	0	0	2	2	2	1	ABC-2	type	transporter
TFIIA_gamma_N	PF02268.11	gi|257052728|ref|YP_003130561.1|	-	0.1	12.1	0.0	0.25	10.9	0.0	1.5	1	0	0	1	1	1	0	Transcription	initiation	factor	IIA,	gamma	subunit,	helical	domain
ABC2_membrane_5	PF13346.1	gi|257052728|ref|YP_003130561.1|	-	0.61	9.3	9.3	0.17	11.1	2.4	2.5	3	0	0	3	3	3	0	ABC-2	family	transporter	protein
TAT_signal	PF10518.4	gi|257052729|ref|YP_003130562.1|	-	0.012	15.5	1.2	0.06	13.3	0.1	2.9	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
TAT_signal	PF10518.4	gi|257052730|ref|YP_003130563.1|	-	0.032	14.2	1.8	0.07	13.1	1.2	1.6	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Usp	PF00582.21	gi|257052731|ref|YP_003130564.1|	-	1.8e-61	206.4	9.6	3.4e-31	108.3	2.5	2.1	2	0	0	2	2	2	2	Universal	stress	protein	family
AP_endonuc_2	PF01261.19	gi|257052731|ref|YP_003130564.1|	-	0.012	14.9	1.2	0.041	13.1	0.8	2.0	1	1	0	1	1	1	0	Xylose	isomerase-like	TIM	barrel
FR47	PF08445.5	gi|257052731|ref|YP_003130564.1|	-	0.054	13.2	0.0	0.18	11.6	0.0	1.8	1	0	0	1	1	1	0	FR47-like	protein
DEAD	PF00270.24	gi|257052732|ref|YP_003130565.1|	-	2.6e-27	95.3	0.0	1.6e-26	92.7	0.0	2.2	3	0	0	3	3	3	1	DEAD/DEAH	box	helicase
Sec63	PF02889.11	gi|257052732|ref|YP_003130565.1|	-	2e-20	73.2	0.0	2.9e-20	72.7	0.0	1.2	1	0	0	1	1	1	1	Sec63	Brl	domain
Helicase_C	PF00271.26	gi|257052732|ref|YP_003130565.1|	-	1.1e-08	34.7	0.0	3.9e-08	33.0	0.0	1.9	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.10	gi|257052732|ref|YP_003130565.1|	-	5.5e-08	32.8	0.0	1.1e-07	31.8	0.0	1.5	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
HHH_5	PF14520.1	gi|257052732|ref|YP_003130565.1|	-	2.4e-05	24.3	4.4	2.6e-05	24.3	1.3	2.4	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
SNF2_N	PF00176.18	gi|257052732|ref|YP_003130565.1|	-	0.0099	14.7	0.0	0.016	14.0	0.0	1.2	1	0	0	1	1	1	1	SNF2	family	N-terminal	domain
T2SE	PF00437.15	gi|257052732|ref|YP_003130565.1|	-	0.019	13.8	0.0	0.05	12.4	0.0	1.6	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
AAA_19	PF13245.1	gi|257052732|ref|YP_003130565.1|	-	0.021	14.5	0.5	0.11	12.2	0.0	2.5	2	0	0	2	2	2	0	Part	of	AAA	domain
DNA_pol_lambd_f	PF10391.4	gi|257052732|ref|YP_003130565.1|	-	0.039	13.4	0.0	0.12	11.9	0.0	1.8	1	0	0	1	1	1	0	Fingers	domain	of	DNA	polymerase	lambda
TetR	PF13972.1	gi|257052732|ref|YP_003130565.1|	-	0.082	12.3	0.0	5.4	6.4	0.0	2.6	2	0	0	2	2	2	0	Bacterial	transcriptional	repressor
Cyclophil_like	PF04126.8	gi|257052734|ref|YP_003130567.1|	-	1.2e-27	95.8	0.0	1.4e-27	95.6	0.0	1.0	1	0	0	1	1	1	1	Cyclophilin-like
DUF2029	PF09594.5	gi|257052735|ref|YP_003130568.1|	-	5.1e-22	78.5	35.8	5.1e-22	78.5	24.8	2.7	2	1	1	3	3	3	1	Protein	of	unknown	function	(DUF2029)
HAD_2	PF13419.1	gi|257052736|ref|YP_003130569.1|	-	3.3e-21	76.2	0.2	4.2e-21	75.9	0.1	1.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.21	gi|257052736|ref|YP_003130569.1|	-	7.3e-11	42.8	0.1	2.3e-09	38.0	0.0	2.1	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|257052736|ref|YP_003130569.1|	-	2.5e-10	39.9	0.4	4.7e-10	39.0	0.3	1.5	1	0	0	1	1	1	1	HAD-hyrolase-like
HAD	PF12710.2	gi|257052736|ref|YP_003130569.1|	-	0.00018	21.7	0.0	0.00027	21.1	0.0	1.3	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
NT5C	PF06941.7	gi|257052736|ref|YP_003130569.1|	-	0.0046	16.4	0.0	0.083	12.3	0.0	2.2	2	0	0	2	2	2	1	5'	nucleotidase,	deoxy	(Pyrimidine),	cytosolic	type	C	protein	(NT5C)
Hydrolase_6	PF13344.1	gi|257052736|ref|YP_003130569.1|	-	0.033	14.0	0.0	0.18	11.7	0.0	2.3	1	1	0	1	1	1	0	Haloacid	dehalogenase-like	hydrolase
NIF	PF03031.13	gi|257052736|ref|YP_003130569.1|	-	0.051	13.2	0.0	0.15	11.7	0.0	1.9	1	1	0	1	1	1	0	NLI	interacting	factor-like	phosphatase
Tub_2	PF04525.7	gi|257052737|ref|YP_003130570.1|	-	8.1e-07	28.6	0.7	0.0028	17.0	0.0	2.9	2	1	1	3	3	3	3	Tubby	C	2
SNase	PF00565.12	gi|257052738|ref|YP_003130571.1|	-	1.1e-18	67.5	0.0	1.7e-18	66.8	0.0	1.2	1	0	0	1	1	1	1	Staphylococcal	nuclease	homologue
MttA_Hcf106	PF02416.11	gi|257052738|ref|YP_003130571.1|	-	0.37	9.9	1.9	0.81	8.8	1.3	1.5	1	0	0	1	1	1	0	mttA/Hcf106	family
TrmB	PF01978.14	gi|257052739|ref|YP_003130572.1|	-	8.3e-08	31.8	0.1	2.9e-07	30.0	0.1	1.8	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.2	gi|257052739|ref|YP_003130572.1|	-	2.6e-06	27.1	0.0	4.7e-06	26.3	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|257052739|ref|YP_003130572.1|	-	0.00017	21.1	0.1	0.0016	17.9	0.0	2.3	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
TetR_N	PF00440.18	gi|257052739|ref|YP_003130572.1|	-	0.037	13.6	0.1	0.25	11.0	0.0	2.2	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	tetR	family
HTH_11	PF08279.7	gi|257052739|ref|YP_003130572.1|	-	0.056	13.0	0.0	0.13	11.9	0.0	1.5	1	0	0	1	1	1	0	HTH	domain
MarR_2	PF12802.2	gi|257052739|ref|YP_003130572.1|	-	0.12	12.0	0.1	1	9.0	0.0	2.2	2	0	0	2	2	2	0	MarR	family
UPF0181	PF03701.9	gi|257052739|ref|YP_003130572.1|	-	0.12	11.6	0.1	0.22	10.8	0.1	1.4	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0181)
PIN_3	PF13470.1	gi|257052740|ref|YP_003130573.1|	-	0.0011	19.6	0.1	0.0049	17.5	0.1	1.9	1	1	0	1	1	1	1	PIN	domain
SQS_PSY	PF00494.14	gi|257052740|ref|YP_003130573.1|	-	0.046	13.0	1.8	0.085	12.1	1.2	1.5	1	1	0	1	1	1	0	Squalene/phytoene	synthase
DUF91	PF01939.11	gi|257052741|ref|YP_003130574.1|	-	2.2e-07	30.2	0.0	2.9e-07	29.8	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF91
zf-C4_Topoisom	PF01396.14	gi|257052741|ref|YP_003130574.1|	-	2.1e-06	27.1	11.8	1.8e-05	24.1	0.4	3.3	3	0	0	3	3	3	2	Topoisomerase	DNA	binding	C4	zinc	finger
Auto_anti-p27	PF06677.7	gi|257052741|ref|YP_003130574.1|	-	0.022	14.5	14.8	0.71	9.6	0.6	4.4	4	1	0	4	4	4	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zinc-ribbons_6	PF07191.7	gi|257052741|ref|YP_003130574.1|	-	0.044	13.5	7.5	0.14	12.0	0.6	2.5	2	0	0	2	2	2	0	zinc-ribbons
zinc_ribbon_2	PF13240.1	gi|257052741|ref|YP_003130574.1|	-	0.079	12.4	2.1	0.96	9.0	0.2	2.8	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF1272	PF06906.6	gi|257052741|ref|YP_003130574.1|	-	0.48	10.3	8.8	0.34	10.7	1.1	2.8	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1272)
zf-ribbon_3	PF13248.1	gi|257052741|ref|YP_003130574.1|	-	0.6	9.3	6.8	2.2	7.6	1.0	3.1	2	0	0	2	2	2	0	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.6	gi|257052741|ref|YP_003130574.1|	-	0.77	9.4	3.8	14	5.4	0.4	2.6	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
HypA	PF01155.14	gi|257052741|ref|YP_003130574.1|	-	2.5	7.8	7.1	3.5	7.3	0.3	3.0	1	1	2	3	3	3	0	Hydrogenase	expression/synthesis	hypA	family
Zn-ribbon_8	PF09723.5	gi|257052741|ref|YP_003130574.1|	-	6.4	6.8	11.9	2.3	8.2	0.1	3.4	2	1	2	4	4	4	0	Zinc	ribbon	domain
PHD	PF00628.24	gi|257052741|ref|YP_003130574.1|	-	8	6.2	8.5	6.4	6.5	0.9	2.8	2	0	0	2	2	2	0	PHD-finger
zf-TFIIB	PF13453.1	gi|257052741|ref|YP_003130574.1|	-	8.2	5.7	9.5	3.3	6.9	0.4	3.2	3	1	1	4	4	4	0	Transcription	factor	zinc-finger
tRNA_int_endo	PF01974.12	gi|257052742|ref|YP_003130575.1|	-	4.5e-38	128.9	0.0	3.5e-26	90.8	0.0	2.4	2	1	0	2	2	2	2	tRNA	intron	endonuclease,	catalytic	C-terminal	domain
tRNA_int_endo_N	PF02778.9	gi|257052742|ref|YP_003130575.1|	-	1.4e-27	94.9	0.2	1.4e-12	46.9	0.1	2.6	2	0	0	2	2	2	2	tRNA	intron	endonuclease,	N-terminal	domain
tRNA-synt_1b	PF00579.20	gi|257052743|ref|YP_003130576.1|	-	7.8e-40	136.8	0.0	9.1e-23	80.7	0.0	2.1	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(W	and	Y)
Rhomboid	PF01694.17	gi|257052744|ref|YP_003130577.1|	-	1.6e-09	37.9	14.2	7.3e-05	22.8	1.7	3.2	3	0	0	3	3	3	2	Rhomboid	family
MatE	PF01554.13	gi|257052745|ref|YP_003130578.1|	-	5e-47	159.5	28.3	1.7e-26	92.7	5.2	2.8	2	1	1	3	3	3	2	MatE
Polysacc_synt_C	PF14667.1	gi|257052745|ref|YP_003130578.1|	-	9.1e-10	38.5	9.5	9.1e-10	38.5	6.6	4.5	4	1	1	5	5	5	3	Polysaccharide	biosynthesis	C-terminal	domain
MVIN	PF03023.9	gi|257052745|ref|YP_003130578.1|	-	1.3e-06	27.1	4.1	1.3e-06	27.1	2.8	2.1	1	1	1	2	2	2	1	MviN-like	protein
DUF1385	PF07136.6	gi|257052747|ref|YP_003130580.1|	-	0.088	11.8	0.1	0.098	11.7	0.0	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1385)
tRNA-synt_2d	PF01409.15	gi|257052748|ref|YP_003130581.1|	-	1.3e-74	250.5	0.0	1.6e-74	250.1	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	II	core	domain	(F)
tRNA-synt_2	PF00152.15	gi|257052748|ref|YP_003130581.1|	-	7.8e-05	21.6	2.0	0.13	11.0	0.1	2.2	2	0	0	2	2	2	2	tRNA	synthetases	class	II	(D,	K	and	N)
MarR_2	PF12802.2	gi|257052748|ref|YP_003130581.1|	-	0.00082	18.9	2.3	0.0097	15.5	0.1	3.2	3	1	0	3	3	3	1	MarR	family
MarR	PF01047.17	gi|257052748|ref|YP_003130581.1|	-	0.00084	19.0	0.3	0.11	12.2	0.0	2.6	2	0	0	2	2	2	1	MarR	family
HTH_27	PF13463.1	gi|257052748|ref|YP_003130581.1|	-	0.0011	19.2	1.8	1.1	9.6	0.2	2.7	3	0	0	3	3	3	2	Winged	helix	DNA-binding	domain
HTH_24	PF13412.1	gi|257052748|ref|YP_003130581.1|	-	0.0028	17.0	0.0	0.0058	15.9	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.14	gi|257052748|ref|YP_003130581.1|	-	0.0045	16.6	0.0	1.4	8.7	0.0	2.9	3	0	0	3	3	3	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_Crp_2	PF13545.1	gi|257052748|ref|YP_003130581.1|	-	0.01	15.5	0.2	0.7	9.7	0.0	2.5	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|257052748|ref|YP_003130581.1|	-	0.018	14.6	1.5	0.044	13.3	0.2	2.3	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
HTH_45	PF14947.1	gi|257052748|ref|YP_003130581.1|	-	0.12	12.1	0.0	1.2	9.0	0.0	2.1	2	0	0	2	2	2	0	Winged	helix-turn-helix
B5	PF03484.10	gi|257052749|ref|YP_003130582.1|	-	4e-17	61.8	0.1	5.6e-15	54.9	0.0	2.8	2	0	0	2	2	2	2	tRNA	synthetase	B5	domain
B3_4	PF03483.12	gi|257052749|ref|YP_003130582.1|	-	7.2e-11	41.8	0.0	1.1e-10	41.1	0.0	1.3	1	0	0	1	1	1	1	B3/4	domain
tRNA-synt_2d	PF01409.15	gi|257052749|ref|YP_003130582.1|	-	0.0015	17.7	0.0	0.0027	16.9	0.0	1.3	1	0	0	1	1	1	1	tRNA	synthetases	class	II	core	domain	(F)
DHO_dh	PF01180.16	gi|257052751|ref|YP_003130584.1|	-	2.5e-83	279.4	0.0	3e-83	279.1	0.0	1.1	1	0	0	1	1	1	1	Dihydroorotate	dehydrogenase
NMO	PF03060.10	gi|257052751|ref|YP_003130584.1|	-	0.00091	18.4	0.5	0.0016	17.6	0.1	1.5	2	0	0	2	2	2	1	Nitronate	monooxygenase
SymE_toxin	PF08845.5	gi|257052752|ref|YP_003130585.1|	-	0.0041	16.9	0.0	0.0045	16.8	0.0	1.1	1	0	0	1	1	1	1	Toxin	SymE,	type	I	toxin-antitoxin	system
Antitoxin-MazE	PF04014.13	gi|257052752|ref|YP_003130585.1|	-	0.012	15.3	0.1	0.018	14.7	0.1	1.3	1	0	0	1	1	1	0	Antidote-toxin	recognition	MazE
MC1	PF05854.6	gi|257052753|ref|YP_003130586.1|	-	1.1e-46	156.7	0.2	1.3e-46	156.5	0.2	1.0	1	0	0	1	1	1	1	Non-histone	chromosomal	protein	MC1
UPF0175	PF03683.8	gi|257052755|ref|YP_003130588.1|	-	1.7e-13	49.8	0.2	2.4e-13	49.3	0.1	1.2	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0175)
PIN	PF01850.16	gi|257052756|ref|YP_003130589.1|	-	2.5e-05	24.5	0.9	4e-05	23.9	0.6	1.3	1	0	0	1	1	1	1	PIN	domain
DUF3368	PF11848.3	gi|257052756|ref|YP_003130589.1|	-	0.0023	17.4	0.0	0.0042	16.6	0.0	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3368)
Se-cys_synth_N	PF12390.3	gi|257052756|ref|YP_003130589.1|	-	0.019	15.0	0.3	0.046	13.8	0.2	1.6	1	0	0	1	1	1	0	Selenocysteine	synthase	N	terminal
TrbC	PF04956.8	gi|257052757|ref|YP_003130590.1|	-	2.1e-05	24.4	3.1	3.1e-05	23.9	2.1	1.4	1	1	0	1	1	1	1	TrbC/VIRB2	family
MauE	PF07291.6	gi|257052757|ref|YP_003130590.1|	-	0.054	13.1	0.2	0.092	12.3	0.1	1.3	1	1	0	1	1	1	0	Methylamine	utilisation	protein	MauE
PEGA	PF08308.6	gi|257052758|ref|YP_003130591.1|	-	0.049	13.4	0.6	0.25	11.1	0.0	2.6	3	0	0	3	3	3	0	PEGA	domain
AAA_10	PF12846.2	gi|257052761|ref|YP_003130594.1|	-	1.8e-44	152.4	0.3	5.9e-44	150.7	0.0	1.8	2	0	0	2	2	2	1	AAA-like	domain
AAA_22	PF13401.1	gi|257052761|ref|YP_003130594.1|	-	1.1e-05	25.5	0.1	0.015	15.4	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
AAA_16	PF13191.1	gi|257052761|ref|YP_003130594.1|	-	0.00025	21.0	1.0	0.031	14.2	0.1	3.0	2	2	1	3	3	3	1	AAA	ATPase	domain
DUF853	PF05872.7	gi|257052761|ref|YP_003130594.1|	-	0.011	14.1	0.0	0.023	13.0	0.0	1.4	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF853)
TrwB_AAD_bind	PF10412.4	gi|257052761|ref|YP_003130594.1|	-	0.053	12.1	0.3	0.68	8.4	0.0	2.1	2	0	0	2	2	2	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
DUF2791	PF10923.3	gi|257052761|ref|YP_003130594.1|	-	0.082	11.5	0.0	0.17	10.4	0.0	1.4	1	0	0	1	1	1	0	P-loop	Domain	of	unknown	function	(DUF2791)
CENP-F_leu_zip	PF10473.4	gi|257052761|ref|YP_003130594.1|	-	0.088	12.6	0.1	0.17	11.7	0.1	1.4	1	0	0	1	1	1	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
ABC_tran	PF00005.22	gi|257052761|ref|YP_003130594.1|	-	0.14	12.4	0.0	4.7	7.5	0.0	2.5	2	0	0	2	2	2	0	ABC	transporter
AAA_10	PF12846.2	gi|257052762|ref|YP_003130595.1|	-	1.8e-12	47.3	1.9	1.6e-11	44.1	0.1	2.4	2	0	0	2	2	2	1	AAA-like	domain
TrwB_AAD_bind	PF10412.4	gi|257052762|ref|YP_003130595.1|	-	5e-05	22.0	0.0	0.16	10.5	0.0	2.2	2	0	0	2	2	2	2	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
DUF87	PF01935.12	gi|257052762|ref|YP_003130595.1|	-	0.00011	22.1	0.0	0.00034	20.5	0.0	1.8	1	1	0	1	1	1	1	Domain	of	unknown	function	DUF87
Pox_D5	PF03288.11	gi|257052762|ref|YP_003130595.1|	-	0.00045	20.4	0.0	0.001	19.2	0.0	1.5	1	0	0	1	1	1	1	Poxvirus	D5	protein-like
TraG-D_C	PF12696.2	gi|257052762|ref|YP_003130595.1|	-	0.0027	17.5	0.0	0.0061	16.4	0.0	1.6	1	0	0	1	1	1	1	TraM	recognition	site	of	TraD	and	TraG
FtsK_SpoIIIE	PF01580.13	gi|257052762|ref|YP_003130595.1|	-	0.072	12.5	0.0	4.8	6.6	0.0	2.7	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
SlyX	PF04102.7	gi|257052763|ref|YP_003130596.1|	-	0.015	15.6	2.3	0.22	11.9	0.6	3.0	3	0	0	3	3	3	0	SlyX
Cortex-I_coil	PF09304.5	gi|257052763|ref|YP_003130596.1|	-	0.032	14.2	1.0	0.073	13.1	0.7	1.5	1	0	0	1	1	1	0	Cortexillin	I,	coiled	coil
DUF1281	PF06924.6	gi|257052763|ref|YP_003130596.1|	-	0.039	13.3	0.0	0.08	12.3	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1281)
XhlA	PF10779.4	gi|257052763|ref|YP_003130596.1|	-	0.077	12.9	1.6	0.22	11.4	1.1	1.7	1	0	0	1	1	1	0	Haemolysin	XhlA
RNA_pol_Rpo13	PF12136.3	gi|257052765|ref|YP_003130598.1|	-	0.5	10.1	2.6	0.66	9.7	1.8	1.3	1	0	0	1	1	1	0	RNA	polymerase	Rpo13	subunit	HTH	domain
Pertussis_S1	PF02917.9	gi|257052766|ref|YP_003130599.1|	-	0.021	14.3	0.0	0.029	13.9	0.0	1.2	1	0	0	1	1	1	0	Pertussis	toxin,	subunit	1
tRNA_anti-codon	PF01336.20	gi|257052767|ref|YP_003130600.1|	-	0.021	14.6	0.0	0.043	13.6	0.0	1.5	1	0	0	1	1	1	0	OB-fold	nucleic	acid	binding	domain
PDDEXK_4	PF14281.1	gi|257052769|ref|YP_003130602.1|	-	1.4e-27	96.7	0.0	3e-27	95.6	0.0	1.6	1	0	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
HSDR_N	PF04313.9	gi|257052769|ref|YP_003130602.1|	-	0.0023	17.7	0.0	0.006	16.3	0.0	1.7	1	0	0	1	1	1	1	Type	I	restriction	enzyme	R	protein	N	terminus	(HSDR_N)
HSDR_N_2	PF13588.1	gi|257052769|ref|YP_003130602.1|	-	0.094	12.5	0.0	0.21	11.4	0.0	1.5	1	0	0	1	1	1	0	Type	I	restriction	enzyme	R	protein	N	terminus	(HSDR_N)
TFIIB	PF00382.14	gi|257052770|ref|YP_003130603.1|	-	1.7e-30	104.6	0.1	5.7e-15	54.8	0.0	2.2	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.7	gi|257052770|ref|YP_003130603.1|	-	1.7e-11	43.2	2.6	3.1e-11	42.3	1.8	1.5	1	0	0	1	1	1	1	TFIIB	zinc-binding
HTH_AsnC-type	PF13404.1	gi|257052770|ref|YP_003130603.1|	-	0.00032	20.1	0.2	0.0039	16.7	0.0	2.5	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HTH_23	PF13384.1	gi|257052770|ref|YP_003130603.1|	-	0.00039	19.9	0.1	0.0039	16.7	0.0	2.5	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_24	PF13412.1	gi|257052770|ref|YP_003130603.1|	-	0.00039	19.7	0.0	0.001	18.4	0.0	1.7	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Sigma70_r4	PF04545.11	gi|257052770|ref|YP_003130603.1|	-	0.00039	19.6	0.0	0.0072	15.6	0.0	2.6	3	0	0	3	3	2	1	Sigma-70,	region	4
HTH_3	PF01381.17	gi|257052770|ref|YP_003130603.1|	-	0.0037	17.0	0.0	0.02	14.7	0.0	2.1	2	0	0	2	2	2	1	Helix-turn-helix
TetR_N	PF00440.18	gi|257052770|ref|YP_003130603.1|	-	0.0049	16.4	0.1	0.13	11.9	0.0	3.0	2	1	1	3	3	3	1	Bacterial	regulatory	proteins,	tetR	family
HTH_28	PF13518.1	gi|257052770|ref|YP_003130603.1|	-	0.0071	16.3	0.0	0.085	12.8	0.0	2.5	2	0	0	2	2	2	1	Helix-turn-helix	domain
Cyclin_C	PF02984.14	gi|257052770|ref|YP_003130603.1|	-	0.019	14.8	0.0	0.49	10.3	0.0	2.2	2	0	0	2	2	2	0	Cyclin,	C-terminal	domain
HTH_31	PF13560.1	gi|257052770|ref|YP_003130603.1|	-	0.028	14.6	1.1	0.24	11.6	0.1	2.8	2	1	0	2	2	2	0	Helix-turn-helix	domain
HTH_Crp_2	PF13545.1	gi|257052770|ref|YP_003130603.1|	-	0.033	13.9	0.0	1	9.2	0.0	2.9	3	0	0	3	3	3	0	Crp-like	helix-turn-helix	domain
LacI	PF00356.16	gi|257052770|ref|YP_003130603.1|	-	0.035	13.7	0.3	0.83	9.3	0.0	2.5	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	lacI	family
OrfB_Zn_ribbon	PF07282.6	gi|257052770|ref|YP_003130603.1|	-	0.042	13.5	1.1	0.1	12.2	0.4	1.8	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
MarR_2	PF12802.2	gi|257052770|ref|YP_003130603.1|	-	0.044	13.4	0.1	0.28	10.9	0.0	2.4	3	0	0	3	3	3	0	MarR	family
Prok-RING_1	PF14446.1	gi|257052770|ref|YP_003130603.1|	-	0.046	13.4	0.6	0.099	12.3	0.4	1.5	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
HTH_11	PF08279.7	gi|257052770|ref|YP_003130603.1|	-	0.058	13.0	0.0	0.53	9.9	0.0	2.1	2	0	0	2	2	2	0	HTH	domain
Sigma70_r4_2	PF08281.7	gi|257052770|ref|YP_003130603.1|	-	0.064	12.7	0.0	0.21	11.0	0.0	1.8	2	0	0	2	2	2	0	Sigma-70,	region	4
HTH_17	PF12728.2	gi|257052770|ref|YP_003130603.1|	-	0.079	13.2	0.0	0.34	11.1	0.0	2.1	1	0	0	1	1	1	0	Helix-turn-helix	domain
HypA	PF01155.14	gi|257052770|ref|YP_003130603.1|	-	0.14	11.8	0.3	3.7	7.2	0.2	2.8	3	0	0	3	3	3	0	Hydrogenase	expression/synthesis	hypA	family
zf-IS66	PF13005.2	gi|257052770|ref|YP_003130603.1|	-	0.6	10.1	4.8	14	5.7	0.2	3.1	3	0	0	3	3	3	0	zinc-finger	binding	domain	of	transposase	IS66
DUF328	PF03883.9	gi|257052772|ref|YP_003130605.1|	-	0.12	11.6	0.0	0.19	10.9	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF328)
TBPIP	PF07106.8	gi|257052774|ref|YP_003130607.1|	-	0.00014	21.4	0.0	0.00019	21.0	0.0	1.1	1	0	0	1	1	1	1	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
HTH_24	PF13412.1	gi|257052774|ref|YP_003130607.1|	-	0.0012	18.2	0.0	0.0024	17.2	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.7	gi|257052774|ref|YP_003130607.1|	-	0.009	15.6	0.0	0.017	14.7	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
HTH_IclR	PF09339.5	gi|257052774|ref|YP_003130607.1|	-	0.028	14.0	0.0	0.061	12.9	0.0	1.5	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_Tnp_ISL3	PF13542.1	gi|257052774|ref|YP_003130607.1|	-	0.11	11.6	0.1	3.2	6.9	0.0	2.3	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	transposase	family	ISL3
UPF0197	PF05251.7	gi|257052774|ref|YP_003130607.1|	-	2.9	8.2	6.3	0.83	10.0	0.4	2.2	1	1	1	2	2	2	0	Uncharacterised	protein	family	(UPF0197)
PspC	PF04024.7	gi|257052774|ref|YP_003130607.1|	-	4	6.9	5.6	4.3	6.8	0.6	2.3	2	0	0	2	2	2	0	PspC	domain
Tmemb_cc2	PF10267.4	gi|257052775|ref|YP_003130608.1|	-	0.44	9.0	1.4	0.54	8.7	1.0	1.1	1	0	0	1	1	1	0	Predicted	transmembrane	and	coiled-coil	2	protein
BPD_transp_1	PF00528.17	gi|257052775|ref|YP_003130608.1|	-	1	8.8	11.3	1.6	8.1	7.8	1.4	1	1	0	1	1	1	0	Binding-protein-dependent	transport	system	inner	membrane	component
McrBC	PF10117.4	gi|257052776|ref|YP_003130609.1|	-	8.2e-58	195.8	0.0	1e-57	195.5	0.0	1.1	1	0	0	1	1	1	1	McrBC	5-methylcytosine	restriction	system	component
HSDR_N_2	PF13588.1	gi|257052776|ref|YP_003130609.1|	-	0.0064	16.2	0.0	0.013	15.2	0.0	1.5	1	0	0	1	1	1	1	Type	I	restriction	enzyme	R	protein	N	terminus	(HSDR_N)
DUF234	PF03008.9	gi|257052776|ref|YP_003130609.1|	-	0.1	12.7	0.1	0.23	11.5	0.0	1.6	1	0	0	1	1	1	0	Archaea	bacterial	proteins	of	unknown	function
AAA_5	PF07728.9	gi|257052777|ref|YP_003130610.1|	-	1e-15	57.6	0.0	2.6e-15	56.3	0.0	1.7	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA_22	PF13401.1	gi|257052777|ref|YP_003130610.1|	-	1.4e-07	31.6	0.0	3.8e-07	30.2	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
AAA	PF00004.24	gi|257052777|ref|YP_003130610.1|	-	9.4e-07	29.0	0.0	2.3e-06	27.8	0.0	1.6	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.1	gi|257052777|ref|YP_003130610.1|	-	0.0079	16.1	0.0	0.14	12.1	0.0	2.6	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_30	PF13604.1	gi|257052777|ref|YP_003130610.1|	-	0.0097	15.4	0.0	0.027	14.0	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_19	PF13245.1	gi|257052777|ref|YP_003130610.1|	-	0.012	15.2	0.0	0.032	13.9	0.0	1.7	1	0	0	1	1	1	0	Part	of	AAA	domain
AAA_24	PF13479.1	gi|257052777|ref|YP_003130610.1|	-	0.017	14.7	0.0	0.03	13.8	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_18	PF13238.1	gi|257052777|ref|YP_003130610.1|	-	0.017	15.4	0.0	0.4	10.9	0.0	2.7	2	0	0	2	2	2	0	AAA	domain
AAA_17	PF13207.1	gi|257052777|ref|YP_003130610.1|	-	0.018	15.8	0.3	0.28	12.0	0.0	3.0	2	1	0	2	2	2	0	AAA	domain
Mg_chelatase	PF01078.16	gi|257052777|ref|YP_003130610.1|	-	0.038	13.1	0.0	0.072	12.2	0.0	1.4	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_25	PF13481.1	gi|257052777|ref|YP_003130610.1|	-	0.069	12.5	0.0	0.18	11.1	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
RNA_helicase	PF00910.17	gi|257052777|ref|YP_003130610.1|	-	0.079	13.1	0.0	0.19	11.8	0.0	1.7	1	0	0	1	1	1	0	RNA	helicase
NACHT	PF05729.7	gi|257052777|ref|YP_003130610.1|	-	0.097	12.3	0.0	0.31	10.6	0.0	1.9	2	0	0	2	2	1	0	NACHT	domain
ASCH	PF04266.9	gi|257052777|ref|YP_003130610.1|	-	0.11	12.8	0.5	5.4	7.4	0.0	3.0	2	1	0	2	2	2	0	ASCH	domain
IstB_IS21	PF01695.12	gi|257052777|ref|YP_003130610.1|	-	0.11	11.8	0.0	0.32	10.3	0.0	1.7	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
PhoH	PF02562.11	gi|257052777|ref|YP_003130610.1|	-	0.13	11.5	0.0	0.24	10.5	0.0	1.4	1	0	0	1	1	1	0	PhoH-like	protein
AAA_11	PF13086.1	gi|257052777|ref|YP_003130610.1|	-	0.17	11.4	0.0	0.3	10.6	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
SNF2_N	PF00176.18	gi|257052779|ref|YP_003130612.1|	-	3e-18	65.6	0.0	2.2e-17	62.8	0.0	2.1	1	1	0	1	1	1	1	SNF2	family	N-terminal	domain
Helicase_C	PF00271.26	gi|257052779|ref|YP_003130612.1|	-	1e-16	60.5	0.0	5.3e-16	58.2	0.0	2.3	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.10	gi|257052779|ref|YP_003130612.1|	-	3.8e-10	39.9	0.3	3.3e-09	36.8	0.0	2.4	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.24	gi|257052779|ref|YP_003130612.1|	-	0.00017	21.1	0.0	0.00036	20.0	0.0	1.5	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
RapA_C	PF12137.3	gi|257052779|ref|YP_003130612.1|	-	0.0025	16.6	0.0	0.0025	16.6	0.0	2.6	3	0	0	3	3	3	1	RNA	polymerase	recycling	family	C-terminal
DUF162	PF02589.10	gi|257052779|ref|YP_003130612.1|	-	0.032	13.7	1.9	0.6	9.5	0.0	2.8	2	0	0	2	2	2	0	Uncharacterised	ACR,	YkgG	family	COG1556
Flavi_DEAD	PF07652.9	gi|257052779|ref|YP_003130612.1|	-	0.14	11.9	0.1	0.31	10.7	0.1	1.5	1	0	0	1	1	1	0	Flavivirus	DEAD	domain
AAA_11	PF13086.1	gi|257052779|ref|YP_003130612.1|	-	0.25	10.9	1.5	1.2	8.6	0.0	2.7	3	0	0	3	3	3	0	AAA	domain
Methyltransf_26	PF13659.1	gi|257052780|ref|YP_003130613.1|	-	5e-09	36.2	0.0	5.4e-08	32.8	0.0	2.6	2	1	0	2	2	2	1	Methyltransferase	domain
Eco57I	PF07669.6	gi|257052780|ref|YP_003130613.1|	-	1.2e-08	35.2	0.0	1.5e-06	28.5	0.0	2.8	1	1	0	1	1	1	1	Eco57I	restriction-modification	methylase
N6_Mtase	PF02384.11	gi|257052780|ref|YP_003130613.1|	-	3.2e-08	33.0	0.0	1.3e-05	24.4	0.0	2.8	2	0	0	2	2	2	2	N-6	DNA	Methylase
UPF0020	PF01170.13	gi|257052780|ref|YP_003130613.1|	-	0.036	13.6	0.0	0.72	9.3	0.0	2.2	2	0	0	2	2	2	0	Putative	RNA	methylase	family	UPF0020
YwqJ-deaminase	PF14431.1	gi|257052780|ref|YP_003130613.1|	-	0.086	12.7	0.0	0.23	11.2	0.0	1.7	1	0	0	1	1	1	0	YwqJ-like	deaminase
SRR	PF07709.6	gi|257052781|ref|YP_003130614.1|	-	0.031	14.3	1.3	7	7.3	0.0	3.1	2	0	0	2	2	2	0	Seven	Residue	Repeat
AAA_21	PF13304.1	gi|257052782|ref|YP_003130615.1|	-	1.3e-27	97.4	7.9	7e-27	95.1	2.9	2.8	2	1	0	2	2	2	1	AAA	domain
AAA_15	PF13175.1	gi|257052782|ref|YP_003130615.1|	-	1.2e-21	77.3	5.7	6.4e-13	48.5	0.0	2.4	2	0	0	2	2	2	2	AAA	ATPase	domain
SMC_N	PF02463.14	gi|257052782|ref|YP_003130615.1|	-	3.7e-12	45.9	4.1	1.4e-05	24.4	0.6	2.3	2	1	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
DUF2813	PF11398.3	gi|257052782|ref|YP_003130615.1|	-	5.8e-08	32.2	0.0	0.00025	20.2	0.0	2.2	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF2813)
AAA_23	PF13476.1	gi|257052782|ref|YP_003130615.1|	-	0.0011	19.2	7.9	0.0044	17.3	5.3	2.3	1	1	0	1	1	1	1	AAA	domain
ABC_tran	PF00005.22	gi|257052782|ref|YP_003130615.1|	-	0.0012	19.1	0.6	0.0057	16.9	0.4	2.2	1	1	0	1	1	1	1	ABC	transporter
AAA_29	PF13555.1	gi|257052782|ref|YP_003130615.1|	-	0.072	12.6	0.0	0.16	11.5	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
HATPase_c_3	PF13589.1	gi|257052783|ref|YP_003130616.1|	-	6.3e-06	25.8	0.0	0.0015	18.2	0.0	2.8	2	0	0	2	2	2	2	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
DEAD	PF00270.24	gi|257052784|ref|YP_003130617.1|	-	3.9e-21	75.2	0.0	2.4e-20	72.6	0.0	2.3	2	1	0	2	2	2	1	DEAD/DEAH	box	helicase
DUF1998	PF09369.5	gi|257052784|ref|YP_003130617.1|	-	1.8e-15	57.2	0.7	1.9e-14	53.9	0.0	3.0	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1998)
Helicase_C	PF00271.26	gi|257052784|ref|YP_003130617.1|	-	2.6e-12	46.4	0.0	7.9e-12	44.8	0.0	1.9	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
DUF2072	PF09845.4	gi|257052784|ref|YP_003130617.1|	-	0.0049	16.7	1.6	0.7	9.8	0.1	3.3	2	0	0	2	2	2	1	Zn-ribbon	containing	protein	(DUF2072)
zf-ribbon_3	PF13248.1	gi|257052784|ref|YP_003130617.1|	-	1.8	7.8	22.5	3	7.1	0.8	5.3	4	1	0	4	4	4	0	zinc-ribbon	domain
DUF3039	PF11238.3	gi|257052784|ref|YP_003130617.1|	-	2.4	7.6	5.1	2	7.9	0.1	3.0	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF3039)
Auto_anti-p27	PF06677.7	gi|257052784|ref|YP_003130617.1|	-	2.9	7.7	9.0	2.5	7.9	0.7	2.8	2	0	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zinc_ribbon_5	PF13719.1	gi|257052784|ref|YP_003130617.1|	-	4.5	6.9	8.0	10	5.7	0.5	4.2	3	1	0	3	3	3	0	zinc-ribbon	domain
UPF0547	PF10571.4	gi|257052784|ref|YP_003130617.1|	-	4.7	6.9	8.5	1.7	8.3	0.5	3.0	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
OrfB_Zn_ribbon	PF07282.6	gi|257052784|ref|YP_003130617.1|	-	9	6.0	13.1	9.4	5.9	0.1	4.2	4	0	0	4	4	4	0	Putative	transposase	DNA-binding	domain
AAA_4	PF04326.9	gi|257052785|ref|YP_003130618.1|	-	1.6e-21	76.7	0.1	1.8e-21	76.5	0.1	1.0	1	0	0	1	1	1	1	Divergent	AAA	domain
Methyltransf_26	PF13659.1	gi|257052786|ref|YP_003130619.1|	-	5.3e-13	49.0	0.0	1.1e-12	48.0	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Eco57I	PF07669.6	gi|257052786|ref|YP_003130619.1|	-	1.3e-12	47.9	0.0	2.7e-12	46.9	0.0	1.5	1	0	0	1	1	1	1	Eco57I	restriction-modification	methylase
TaqI_C	PF12950.2	gi|257052786|ref|YP_003130619.1|	-	1.9e-09	37.3	0.0	3.1e-09	36.6	0.0	1.4	1	0	0	1	1	1	1	TaqI-like	C-terminal	specificity	domain
MTS	PF05175.9	gi|257052786|ref|YP_003130619.1|	-	8e-06	25.3	0.0	1.5e-05	24.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	small	domain
UPF0020	PF01170.13	gi|257052786|ref|YP_003130619.1|	-	0.0013	18.3	0.0	0.0071	15.9	0.0	2.1	1	1	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
N6_Mtase	PF02384.11	gi|257052786|ref|YP_003130619.1|	-	0.0095	15.0	0.0	0.041	12.9	0.0	1.9	1	1	0	1	1	1	1	N-6	DNA	Methylase
Methyltransf_25	PF13649.1	gi|257052786|ref|YP_003130619.1|	-	0.066	13.5	0.0	0.47	10.8	0.0	2.4	2	1	0	2	2	2	0	Methyltransferase	domain
UvrD-helicase	PF00580.16	gi|257052787|ref|YP_003130620.1|	-	3.5e-50	171.0	0.3	3.6e-49	167.7	0.2	2.1	1	1	0	1	1	1	1	UvrD/REP	helicase	N-terminal	domain
UvrD_C	PF13361.1	gi|257052787|ref|YP_003130620.1|	-	5.1e-32	111.7	0.0	1e-18	67.9	0.0	2.3	1	1	0	2	2	2	2	UvrD-like	helicase	C-terminal	domain
AAA_19	PF13245.1	gi|257052787|ref|YP_003130620.1|	-	1.7e-14	53.3	0.0	2e-12	46.6	0.0	3.2	3	0	0	3	3	3	1	Part	of	AAA	domain
PDDEXK_1	PF12705.2	gi|257052787|ref|YP_003130620.1|	-	2e-10	40.5	3.6	2.5e-10	40.1	1.2	2.1	2	1	0	2	2	2	1	PD-(D/E)XK	nuclease	superfamily
UvrD_C_2	PF13538.1	gi|257052787|ref|YP_003130620.1|	-	8.7e-08	32.2	0.0	0.018	15.1	0.0	2.7	2	0	0	2	2	2	2	UvrD-like	helicase	C-terminal	domain
AAA_30	PF13604.1	gi|257052787|ref|YP_003130620.1|	-	8.2e-05	22.2	0.0	0.00024	20.7	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
Viral_helicase1	PF01443.13	gi|257052787|ref|YP_003130620.1|	-	0.0029	17.1	0.1	9.2	5.7	0.0	3.5	3	0	0	3	3	3	1	Viral	(Superfamily	1)	RNA	helicase
AAA_22	PF13401.1	gi|257052787|ref|YP_003130620.1|	-	0.033	14.3	0.0	0.14	12.2	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
PhoH	PF02562.11	gi|257052787|ref|YP_003130620.1|	-	0.043	13.0	0.0	6.4	5.9	0.0	2.3	2	0	0	2	2	2	0	PhoH-like	protein
AAA_12	PF13087.1	gi|257052787|ref|YP_003130620.1|	-	0.044	13.1	0.0	0.2	10.9	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
PDDEXK_1	PF12705.2	gi|257052788|ref|YP_003130621.1|	-	2.3e-15	56.6	0.3	5.3e-15	55.4	0.2	1.6	1	0	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
DUF457	PF04307.9	gi|257052789|ref|YP_003130622.1|	-	2.4e-16	59.4	8.9	3.5e-16	58.9	6.1	1.2	1	0	0	1	1	1	1	Predicted	membrane-bound	metal-dependent	hydrolase	(DUF457)
VWA	PF00092.23	gi|257052791|ref|YP_003130624.1|	-	2.8e-11	43.4	0.3	4e-11	42.9	0.2	1.3	1	1	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA_2	PF13519.1	gi|257052791|ref|YP_003130624.1|	-	5.3e-10	39.6	1.7	8.7e-10	38.9	1.1	1.4	1	1	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA_3	PF13768.1	gi|257052791|ref|YP_003130624.1|	-	0.00021	20.9	0.1	0.00049	19.8	0.0	1.6	1	1	0	2	2	2	1	von	Willebrand	factor	type	A	domain
vWA-TerF-like	PF10138.4	gi|257052791|ref|YP_003130624.1|	-	0.0016	18.2	1.4	0.0052	16.6	0.7	2.0	1	1	0	1	1	1	1	vWA	found	in	TerF	C	terminus
DUF2201	PF09967.4	gi|257052791|ref|YP_003130624.1|	-	0.044	13.8	0.8	0.76	9.7	0.6	2.5	1	1	0	1	1	1	0	VWA-like	domain	(DUF2201)
DUF1194	PF06707.6	gi|257052791|ref|YP_003130624.1|	-	0.15	11.0	1.4	0.17	10.8	0.1	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1194)
Pentapeptide_3	PF13576.1	gi|257052793|ref|YP_003130626.1|	-	5.8e-10	38.9	23.1	0.0057	16.5	0.1	7.7	7	2	1	8	8	8	4	Pentapeptide	repeats	(9	copies)
Pentapeptide	PF00805.17	gi|257052793|ref|YP_003130626.1|	-	0.0054	15.9	0.1	2.2	7.5	0.0	4.6	4	0	0	4	4	4	1	Pentapeptide	repeats	(8	copies)
HEAT_2	PF13646.1	gi|257052795|ref|YP_003130628.1|	-	9.2e-20	70.7	3.0	1.2e-11	44.6	0.2	2.8	2	1	0	2	2	2	2	HEAT	repeats
HEAT	PF02985.17	gi|257052795|ref|YP_003130628.1|	-	9.9e-15	53.2	3.3	0.00026	20.8	0.0	4.7	4	0	0	4	4	4	3	HEAT	repeat
HEAT_EZ	PF13513.1	gi|257052795|ref|YP_003130628.1|	-	2.2e-11	43.8	5.1	0.021	15.2	0.1	4.5	3	1	1	4	4	4	4	HEAT-like	repeat
Arm	PF00514.18	gi|257052795|ref|YP_003130628.1|	-	1.4e-05	24.7	1.2	0.028	14.2	0.0	3.8	4	0	0	4	4	4	1	Armadillo/beta-catenin-like	repeat
HEAT_PBS	PF03130.11	gi|257052795|ref|YP_003130628.1|	-	1.9e-05	24.7	1.9	0.00097	19.3	0.1	3.5	3	0	0	3	3	3	1	PBS	lyase	HEAT-like	repeat
Adaptin_N	PF01602.15	gi|257052795|ref|YP_003130628.1|	-	0.00051	18.4	0.0	0.022	13.1	0.0	2.1	1	1	0	2	2	2	1	Adaptin	N	terminal	region
Cnd1	PF12717.2	gi|257052795|ref|YP_003130628.1|	-	0.0022	17.8	0.0	0.023	14.5	0.0	2.3	2	1	1	3	3	3	1	non-SMC	mitotic	condensation	complex	subunit	1
ALF	PF03752.8	gi|257052795|ref|YP_003130628.1|	-	0.013	15.3	0.4	0.039	13.8	0.2	1.9	1	0	0	1	1	1	0	Short	repeats	of	unknown	function
Vac14_Fab1_bd	PF12755.2	gi|257052795|ref|YP_003130628.1|	-	0.035	14.4	0.0	3	8.2	0.0	2.7	2	1	0	2	2	2	0	Vacuolar	14	Fab1-binding	region
Cohesin_HEAT	PF12765.2	gi|257052795|ref|YP_003130628.1|	-	0.082	12.8	0.1	19	5.3	0.0	2.7	2	0	0	2	2	2	0	HEAT	repeat	associated	with	sister	chromatid	cohesion
HNH_2	PF13391.1	gi|257052796|ref|YP_003130629.1|	-	1.2e-08	34.6	0.0	3.7e-08	33.0	0.0	1.9	1	0	0	1	1	1	1	HNH	endonuclease
HNH	PF01844.18	gi|257052796|ref|YP_003130629.1|	-	5.3e-06	26.2	0.9	5.3e-06	26.2	0.6	2.3	3	0	0	3	3	3	1	HNH	endonuclease
HTH_40	PF14493.1	gi|257052796|ref|YP_003130629.1|	-	0.0084	16.3	0.4	0.074	13.2	0.5	2.5	3	1	0	3	3	3	1	Helix-turn-helix	domain
Sigma70_r4_2	PF08281.7	gi|257052796|ref|YP_003130629.1|	-	0.017	14.6	0.9	0.028	13.8	0.2	1.7	2	0	0	2	2	2	0	Sigma-70,	region	4
MRP-L20	PF12824.2	gi|257052796|ref|YP_003130629.1|	-	0.018	15.0	0.1	0.082	12.8	0.0	1.9	2	0	0	2	2	2	0	Mitochondrial	ribosomal	protein	subunit	L20
HTH_32	PF13565.1	gi|257052796|ref|YP_003130629.1|	-	0.042	14.6	0.3	2.9	8.7	0.1	3.0	2	1	1	3	3	3	0	Homeodomain-like	domain
HTH_38	PF13936.1	gi|257052796|ref|YP_003130629.1|	-	0.05	13.1	1.0	0.45	10.1	0.0	2.9	3	0	0	3	3	3	0	Helix-turn-helix	domain
HTH_29	PF13551.1	gi|257052796|ref|YP_003130629.1|	-	0.059	13.5	1.0	0.37	10.9	0.2	2.5	2	1	1	3	3	3	0	Winged	helix-turn	helix
Sigma70_r4	PF04545.11	gi|257052796|ref|YP_003130629.1|	-	0.076	12.3	0.1	1.1	8.6	0.0	2.3	2	0	0	2	2	2	0	Sigma-70,	region	4
AAA_22	PF13401.1	gi|257052797|ref|YP_003130630.1|	-	2.7e-11	43.7	0.1	1.9e-10	40.9	0.0	2.2	1	1	1	2	2	2	1	AAA	domain
AAA_16	PF13191.1	gi|257052797|ref|YP_003130630.1|	-	2.4e-10	40.7	10.0	8.2e-09	35.7	0.1	3.3	2	2	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.24	gi|257052797|ref|YP_003130630.1|	-	1.3e-05	25.3	0.1	8.3e-05	22.8	0.0	2.4	1	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Arch_ATPase	PF01637.13	gi|257052797|ref|YP_003130630.1|	-	1.4e-05	24.9	0.0	0.00022	21.0	0.0	2.7	1	1	0	1	1	1	1	Archaeal	ATPase
AAA_10	PF12846.2	gi|257052797|ref|YP_003130630.1|	-	0.00022	20.7	0.5	0.0045	16.4	0.3	3.1	1	1	0	1	1	1	1	AAA-like	domain
Sigma54_activ_2	PF14532.1	gi|257052797|ref|YP_003130630.1|	-	0.00024	21.1	0.1	0.67	9.9	0.0	2.7	3	0	0	3	3	2	2	Sigma-54	interaction	domain
NTPase_1	PF03266.10	gi|257052797|ref|YP_003130630.1|	-	0.00036	20.2	0.1	0.0028	17.3	0.0	2.4	2	2	0	2	2	2	1	NTPase
AAA_18	PF13238.1	gi|257052797|ref|YP_003130630.1|	-	0.00047	20.4	1.3	0.0025	18.1	0.2	2.5	2	1	0	2	2	2	1	AAA	domain
AAA_17	PF13207.1	gi|257052797|ref|YP_003130630.1|	-	0.00057	20.6	1.2	0.0056	17.4	0.8	2.4	1	1	0	1	1	1	1	AAA	domain
AAA_5	PF07728.9	gi|257052797|ref|YP_003130630.1|	-	0.00081	19.1	0.0	0.0034	17.1	0.0	2.1	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
Bac_DnaA	PF00308.13	gi|257052797|ref|YP_003130630.1|	-	0.0013	18.4	0.5	0.0069	16.0	0.3	2.0	1	1	0	1	1	1	1	Bacterial	dnaA	protein
DUF2075	PF09848.4	gi|257052797|ref|YP_003130630.1|	-	0.0016	17.4	0.0	0.0027	16.7	0.0	1.5	1	1	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2075)
Phage-MuB_C	PF09077.6	gi|257052797|ref|YP_003130630.1|	-	0.0017	17.9	0.3	0.0048	16.5	0.2	1.7	1	0	0	1	1	1	1	Mu	B	transposition	protein,	C	terminal
Rad17	PF03215.10	gi|257052797|ref|YP_003130630.1|	-	0.0018	17.0	0.1	0.031	12.9	0.1	2.4	1	1	0	1	1	1	1	Rad17	cell	cycle	checkpoint	protein
NB-ARC	PF00931.17	gi|257052797|ref|YP_003130630.1|	-	0.0026	16.6	0.0	0.0035	16.2	0.0	1.3	1	0	0	1	1	1	1	NB-ARC	domain
AAA_14	PF13173.1	gi|257052797|ref|YP_003130630.1|	-	0.0042	16.9	0.0	0.011	15.5	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
NACHT	PF05729.7	gi|257052797|ref|YP_003130630.1|	-	0.0068	16.0	0.0	0.035	13.7	0.0	2.0	1	1	1	2	2	2	1	NACHT	domain
DUF815	PF05673.8	gi|257052797|ref|YP_003130630.1|	-	0.013	14.4	0.0	0.11	11.3	0.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF815)
Zeta_toxin	PF06414.7	gi|257052797|ref|YP_003130630.1|	-	0.013	14.5	0.0	1.4	7.9	0.0	2.5	2	0	0	2	2	2	0	Zeta	toxin
Mg_chelatase_2	PF13335.1	gi|257052797|ref|YP_003130630.1|	-	0.014	15.7	4.4	0.027	14.8	3.1	1.4	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
Penicillinase_R	PF03965.11	gi|257052797|ref|YP_003130630.1|	-	0.021	14.9	0.0	0.058	13.4	0.0	1.8	1	0	0	1	1	1	0	Penicillinase	repressor
KAP_NTPase	PF07693.9	gi|257052797|ref|YP_003130630.1|	-	0.021	13.8	0.0	0.059	12.3	0.0	2.1	1	1	0	2	2	2	0	KAP	family	P-loop	domain
ABC_tran	PF00005.22	gi|257052797|ref|YP_003130630.1|	-	0.023	14.9	0.2	0.71	10.1	0.0	2.4	1	1	1	2	2	2	0	ABC	transporter
AAA_33	PF13671.1	gi|257052797|ref|YP_003130630.1|	-	0.033	14.0	3.7	0.14	12.0	0.4	3.2	2	1	0	2	2	2	0	AAA	domain
PhoH	PF02562.11	gi|257052797|ref|YP_003130630.1|	-	0.058	12.6	0.0	1.3	8.1	0.0	2.5	2	1	0	2	2	2	0	PhoH-like	protein
ATP-synt_ab	PF00006.20	gi|257052797|ref|YP_003130630.1|	-	0.099	12.1	0.0	0.15	11.5	0.0	1.4	1	1	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
DEAD	PF00270.24	gi|257052797|ref|YP_003130630.1|	-	0.12	11.8	0.0	0.42	10.0	0.0	2.2	1	1	0	1	1	1	0	DEAD/DEAH	box	helicase
MobB	PF03205.9	gi|257052797|ref|YP_003130630.1|	-	0.15	11.7	0.0	0.49	10.0	0.0	1.8	2	0	0	2	2	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
HTH_IclR	PF09339.5	gi|257052798|ref|YP_003130631.1|	-	0.0021	17.6	0.0	0.1	12.2	0.0	2.2	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
GntR	PF00392.16	gi|257052798|ref|YP_003130631.1|	-	0.0032	16.8	0.0	0.15	11.5	0.0	2.3	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
Fe_dep_repress	PF01325.14	gi|257052798|ref|YP_003130631.1|	-	0.01	15.7	0.0	0.18	11.7	0.0	2.3	2	0	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR_2	PF12802.2	gi|257052798|ref|YP_003130631.1|	-	0.014	15.0	0.1	0.073	12.7	0.0	2.0	2	0	0	2	2	2	0	MarR	family
TrmB	PF01978.14	gi|257052798|ref|YP_003130631.1|	-	0.047	13.3	0.0	0.09	12.5	0.0	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.1	gi|257052798|ref|YP_003130631.1|	-	0.067	12.5	0.3	0.18	11.2	0.0	1.8	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.17	gi|257052798|ref|YP_003130631.1|	-	0.076	12.7	0.0	0.6	9.8	0.0	2.2	2	0	0	2	2	2	0	MarR	family
Rrf2	PF02082.15	gi|257052798|ref|YP_003130631.1|	-	0.12	12.4	0.0	8.5	6.5	0.0	2.4	3	0	0	3	3	3	0	Transcriptional	regulator
HTH_29	PF13551.1	gi|257052798|ref|YP_003130631.1|	-	0.13	12.4	0.0	0.27	11.4	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn	helix
NTP_transf_5	PF14907.1	gi|257052799|ref|YP_003130632.1|	-	2.7e-06	26.9	0.0	3.3e-06	26.6	0.0	1.2	1	0	0	1	1	1	1	Uncharacterised	nucleotidyltransferase
DUF1814	PF08843.6	gi|257052799|ref|YP_003130632.1|	-	7.4e-05	22.6	1.3	0.00015	21.6	0.9	1.6	1	1	0	1	1	1	1	Nucleotidyl	transferase	of	unknown	function	(DUF1814)
NTP_transf_2	PF01909.18	gi|257052799|ref|YP_003130632.1|	-	0.0045	17.2	0.3	0.01	16.1	0.2	1.7	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
DUF2204	PF09970.4	gi|257052799|ref|YP_003130632.1|	-	0.01	15.3	0.2	0.017	14.5	0.1	1.3	1	0	0	1	1	1	0	Nucleotidyl	transferase	of	unknown	function	(DUF2204)
Propep_M14	PF02244.11	gi|257052799|ref|YP_003130632.1|	-	0.063	12.9	0.1	0.28	10.8	0.1	2.1	1	1	0	1	1	1	0	Carboxypeptidase	activation	peptide
NTP_transf_2	PF01909.18	gi|257052800|ref|YP_003130633.1|	-	1.2e-05	25.5	0.3	2.7e-05	24.4	0.2	1.6	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
MtrB	PF05440.7	gi|257052800|ref|YP_003130633.1|	-	0.02	14.9	0.5	0.052	13.5	0.3	1.7	1	0	0	1	1	1	0	Tetrahydromethanopterin	S-methyltransferase	subunit	B
UvrD-helicase	PF00580.16	gi|257052802|ref|YP_003130635.1|	-	7.8e-47	160.0	0.0	1.2e-46	159.4	0.0	1.3	1	0	0	1	1	1	1	UvrD/REP	helicase	N-terminal	domain
UvrD_C	PF13361.1	gi|257052802|ref|YP_003130635.1|	-	6.3e-13	48.9	0.0	1.1e-07	31.6	0.0	2.3	1	1	1	2	2	2	2	UvrD-like	helicase	C-terminal	domain
AAA_19	PF13245.1	gi|257052802|ref|YP_003130635.1|	-	5.1e-10	38.9	0.0	1.4e-09	37.5	0.0	1.7	1	0	0	1	1	1	1	Part	of	AAA	domain
UvrD_C_2	PF13538.1	gi|257052802|ref|YP_003130635.1|	-	5.5e-06	26.4	0.1	8.1e-05	22.7	0.1	2.8	1	1	0	1	1	1	1	UvrD-like	helicase	C-terminal	domain
AAA_30	PF13604.1	gi|257052802|ref|YP_003130635.1|	-	5.9e-05	22.7	0.0	0.00023	20.8	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
Viral_helicase1	PF01443.13	gi|257052802|ref|YP_003130635.1|	-	0.0029	17.1	0.2	3.4	7.1	0.0	3.3	3	1	0	3	3	3	2	Viral	(Superfamily	1)	RNA	helicase
cwf21	PF08312.7	gi|257052802|ref|YP_003130635.1|	-	0.045	13.5	1.9	0.13	12.1	0.0	2.8	3	1	0	3	3	3	0	cwf21	domain
IncA	PF04156.9	gi|257052802|ref|YP_003130635.1|	-	3.9	7.0	4.8	1.3	8.5	0.6	2.0	2	0	0	2	2	2	0	IncA	protein
ADP_ribosyl_GH	PF03747.9	gi|257052803|ref|YP_003130636.1|	-	8.3e-73	245.6	5.7	9.5e-73	245.4	3.9	1.0	1	0	0	1	1	1	1	ADP-ribosylglycohydrolase
Gly-zipper_YMGG	PF13441.1	gi|257052803|ref|YP_003130636.1|	-	0.54	9.8	9.7	3.8	7.0	5.8	2.4	2	0	0	2	2	2	0	YMGG-like	Gly-zipper
Gly-zipper_OmpA	PF13436.1	gi|257052803|ref|YP_003130636.1|	-	0.6	9.7	8.7	0.099	12.3	2.1	2.3	2	1	0	2	2	2	0	Glycine-zipper	containing	OmpA-like	membrane	domain
Gly-zipper_Omp	PF13488.1	gi|257052803|ref|YP_003130636.1|	-	0.78	9.4	6.9	0.32	10.6	2.3	2.1	2	0	0	2	2	2	0	Glycine	zipper
zf-RING_3	PF14369.1	gi|257052804|ref|YP_003130637.1|	-	0.0038	17.1	1.8	0.0054	16.7	0.4	1.9	2	0	0	2	2	2	1	zinc-finger
DUF2746	PF10874.3	gi|257052806|ref|YP_003130639.1|	-	0.076	13.2	0.3	0.089	12.9	0.2	1.2	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2746)
RHH_1	PF01402.16	gi|257052806|ref|YP_003130639.1|	-	0.092	12.6	0.1	0.11	12.4	0.1	1.3	1	1	0	1	1	1	0	Ribbon-helix-helix	protein,	copG	family
Phage_integrase	PF00589.17	gi|257052808|ref|YP_003130641.1|	-	8.8e-17	61.3	0.0	1.6e-16	60.4	0.0	1.4	1	0	0	1	1	1	1	Phage	integrase	family
DZR	PF12773.2	gi|257052808|ref|YP_003130641.1|	-	0.00026	20.7	1.3	0.00048	19.8	0.9	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-ribbon_3	PF13248.1	gi|257052808|ref|YP_003130641.1|	-	0.0014	17.7	2.3	0.0028	16.8	1.6	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
DUF3349	PF11829.3	gi|257052808|ref|YP_003130641.1|	-	0.038	14.4	0.2	0.45	10.9	0.0	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3349)
NOB1_Zn_bind	PF08772.6	gi|257052808|ref|YP_003130641.1|	-	0.62	9.9	2.1	2	8.3	1.4	1.8	1	1	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
zinc_ribbon_2	PF13240.1	gi|257052808|ref|YP_003130641.1|	-	0.86	9.1	4.3	0.43	10.1	1.3	1.7	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF4404	PF14357.1	gi|257052808|ref|YP_003130641.1|	-	2.5	8.5	6.1	0.41	11.0	0.5	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4404)
TauE	PF01925.14	gi|257052810|ref|YP_003130643.1|	-	0.14	11.5	33.7	0.44	9.9	22.2	2.0	1	1	1	2	2	2	0	Sulfite	exporter	TauE/SafE
Choline_transpo	PF04515.7	gi|257052810|ref|YP_003130643.1|	-	0.42	9.3	22.2	15	4.1	9.6	3.6	2	1	0	2	2	2	0	Plasma-membrane	choline	transporter
YuiB	PF14068.1	gi|257052810|ref|YP_003130643.1|	-	0.45	10.8	5.5	0.19	12.0	0.9	2.5	1	1	1	2	2	2	0	Putative	membrane	protein
Response_reg	PF00072.19	gi|257052812|ref|YP_003130645.1|	-	1.9e-16	60.0	0.8	2.8e-16	59.5	0.6	1.3	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HalX	PF08663.5	gi|257052812|ref|YP_003130645.1|	-	0.00043	20.2	3.0	0.00043	20.2	2.1	2.1	2	0	0	2	2	2	1	HalX	domain
VIT1	PF01988.14	gi|257052812|ref|YP_003130645.1|	-	0.11	11.9	0.7	0.19	11.1	0.5	1.3	1	0	0	1	1	1	0	VIT	family
DUF1541	PF07563.6	gi|257052812|ref|YP_003130645.1|	-	0.16	11.6	0.0	0.3	10.7	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1541)
HTH_IclR	PF09339.5	gi|257052813|ref|YP_003130646.1|	-	3.7e-07	29.6	0.0	6e-07	28.9	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.2	gi|257052813|ref|YP_003130646.1|	-	0.00023	20.7	0.0	0.00035	20.1	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.1	gi|257052813|ref|YP_003130646.1|	-	0.0022	17.3	0.0	0.0036	16.6	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.14	gi|257052813|ref|YP_003130646.1|	-	0.0029	17.2	0.0	0.0045	16.6	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.15	gi|257052813|ref|YP_003130646.1|	-	0.0078	15.8	0.0	0.012	15.2	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_27	PF13463.1	gi|257052813|ref|YP_003130646.1|	-	0.012	15.8	0.0	0.022	15.0	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_20	PF12840.2	gi|257052813|ref|YP_003130646.1|	-	0.019	14.7	0.2	0.03	14.1	0.2	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF222	PF02720.12	gi|257052813|ref|YP_003130646.1|	-	0.042	12.9	0.1	0.049	12.7	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF222)
HTH_AsnC-type	PF13404.1	gi|257052813|ref|YP_003130646.1|	-	0.092	12.2	0.1	0.2	11.2	0.0	1.6	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
PAS_4	PF08448.5	gi|257052814|ref|YP_003130647.1|	-	3.1e-09	36.8	0.2	1.3e-08	34.8	0.1	2.1	1	1	0	1	1	1	1	PAS	fold
PAS_9	PF13426.1	gi|257052814|ref|YP_003130647.1|	-	8.5e-09	35.7	0.1	4.3e-08	33.4	0.0	2.2	2	1	0	2	2	2	1	PAS	domain
PAS	PF00989.19	gi|257052814|ref|YP_003130647.1|	-	7.2e-05	22.5	0.0	0.00024	20.8	0.0	1.9	1	1	0	1	1	1	1	PAS	fold
PAS_7	PF12860.2	gi|257052814|ref|YP_003130647.1|	-	8e-05	22.6	0.2	0.038	13.9	0.1	2.6	1	1	1	2	2	2	2	PAS	fold
PAS_8	PF13188.1	gi|257052814|ref|YP_003130647.1|	-	0.00013	21.6	0.1	0.001	18.8	0.0	2.5	3	0	0	3	3	3	1	PAS	domain
HATPase_c	PF02518.21	gi|257052814|ref|YP_003130647.1|	-	0.038	13.7	0.0	0.096	12.4	0.0	1.7	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c	PF02518.21	gi|257052815|ref|YP_003130648.1|	-	2.8e-17	62.4	0.0	5.3e-17	61.5	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.1	gi|257052815|ref|YP_003130648.1|	-	1.2e-08	34.7	0.0	2.7e-08	33.6	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
PAS_8	PF13188.1	gi|257052815|ref|YP_003130648.1|	-	7.4e-07	28.8	0.0	2.8e-06	26.9	0.0	1.9	1	0	0	1	1	1	1	PAS	domain
HisKA	PF00512.20	gi|257052815|ref|YP_003130648.1|	-	4.3e-06	26.6	0.3	1.1e-05	25.3	0.2	1.7	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_4	PF08448.5	gi|257052815|ref|YP_003130648.1|	-	3.5e-05	23.7	1.7	0.0009	19.2	1.1	2.7	1	1	0	1	1	1	1	PAS	fold
HATPase_c_3	PF13589.1	gi|257052815|ref|YP_003130648.1|	-	0.00015	21.4	0.0	0.00028	20.5	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS	PF00989.19	gi|257052815|ref|YP_003130648.1|	-	0.0016	18.1	0.0	0.0035	17.1	0.0	1.6	1	0	0	1	1	1	1	PAS	fold
HATPase_c_5	PF14501.1	gi|257052815|ref|YP_003130648.1|	-	0.016	14.9	0.0	0.024	14.3	0.0	1.3	1	0	0	1	1	1	0	GHKL	domain
PAS_9	PF13426.1	gi|257052815|ref|YP_003130648.1|	-	0.027	14.8	0.0	0.13	12.6	0.0	2.0	1	1	1	2	2	2	0	PAS	domain
DUF4367	PF14285.1	gi|257052816|ref|YP_003130649.1|	-	0.14	11.4	0.0	0.23	10.7	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4367)
TAT_signal	PF10518.4	gi|257052816|ref|YP_003130649.1|	-	5.9	7.1	8.0	0.23	11.5	1.3	2.0	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
RDD	PF06271.7	gi|257052817|ref|YP_003130650.1|	-	1.7e-19	70.1	0.6	2e-19	69.8	0.4	1.0	1	0	0	1	1	1	1	RDD	family
TOBE_3	PF12857.2	gi|257052817|ref|YP_003130650.1|	-	0.14	12.0	0.0	0.22	11.4	0.0	1.3	1	0	0	1	1	1	0	TOBE-like	domain
DUF202	PF02656.10	gi|257052818|ref|YP_003130651.1|	-	0.54	10.5	12.5	18	5.6	0.0	3.9	3	1	0	3	3	3	0	Domain	of	unknown	function	(DUF202)
GAF_2	PF13185.1	gi|257052819|ref|YP_003130652.1|	-	4.1e-15	56.5	0.5	1.2e-14	54.9	0.2	2.0	2	0	0	2	2	2	1	GAF	domain
HTH_10	PF04967.7	gi|257052819|ref|YP_003130652.1|	-	6.9e-14	51.1	0.0	1.7e-13	49.9	0.0	1.7	1	0	0	1	1	1	1	HTH	DNA	binding	domain
GAF_3	PF13492.1	gi|257052819|ref|YP_003130652.1|	-	1.2e-08	35.0	0.0	3.7e-08	33.5	0.0	1.9	1	0	0	1	1	1	1	GAF	domain
GAF	PF01590.21	gi|257052819|ref|YP_003130652.1|	-	8.3e-05	22.7	0.0	0.00027	21.0	0.0	1.9	1	1	0	1	1	1	1	GAF	domain
PAS_4	PF08448.5	gi|257052819|ref|YP_003130652.1|	-	0.0002	21.3	3.4	0.00086	19.3	0.1	3.2	2	1	1	3	3	3	1	PAS	fold
HTH_20	PF12840.2	gi|257052819|ref|YP_003130652.1|	-	0.0018	18.0	0.1	0.021	14.5	0.0	2.8	1	1	0	1	1	1	1	Helix-turn-helix	domain
PAS_9	PF13426.1	gi|257052819|ref|YP_003130652.1|	-	0.002	18.5	0.0	0.051	13.9	0.0	2.7	2	0	0	2	2	2	1	PAS	domain
HTH_1	PF00126.22	gi|257052819|ref|YP_003130652.1|	-	0.041	13.6	0.6	0.13	11.9	0.1	2.1	2	0	0	2	2	2	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
PAS	PF00989.19	gi|257052819|ref|YP_003130652.1|	-	0.053	13.3	0.2	0.41	10.4	0.0	2.4	3	0	0	3	3	3	0	PAS	fold
AIM24	PF01987.12	gi|257052820|ref|YP_003130653.1|	-	2.1e-42	145.0	0.3	2.6e-42	144.7	0.2	1.0	1	0	0	1	1	1	1	Mitochondrial	biogenesis	AIM24
HATPase_c	PF02518.21	gi|257052821|ref|YP_003130654.1|	-	1.7e-21	75.9	0.0	3.2e-21	75.1	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.20	gi|257052821|ref|YP_003130654.1|	-	2.7e-09	36.8	1.2	7.1e-09	35.5	0.4	2.0	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_3	PF13589.1	gi|257052821|ref|YP_003130654.1|	-	0.0018	17.9	0.0	0.0031	17.1	0.0	1.3	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_8	PF13188.1	gi|257052821|ref|YP_003130654.1|	-	0.0038	17.0	0.0	0.013	15.3	0.0	1.9	1	0	0	1	1	1	1	PAS	domain
HTH_20	PF12840.2	gi|257052822|ref|YP_003130655.1|	-	2.4e-08	33.6	0.5	3.8e-08	32.9	0.4	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|257052822|ref|YP_003130655.1|	-	3.9e-07	29.6	0.0	6.3e-07	28.9	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.14	gi|257052822|ref|YP_003130655.1|	-	1e-06	28.3	0.0	1.5e-06	27.8	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.5	gi|257052822|ref|YP_003130655.1|	-	2.7e-05	23.6	0.9	7.8e-05	22.1	0.6	1.8	1	1	0	1	1	1	1	IclR	helix-turn-helix	domain
PadR	PF03551.9	gi|257052822|ref|YP_003130655.1|	-	0.00011	21.8	0.0	0.00023	20.8	0.0	1.5	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
MarR_2	PF12802.2	gi|257052822|ref|YP_003130655.1|	-	0.00037	20.1	0.3	0.00068	19.2	0.2	1.4	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.7	gi|257052822|ref|YP_003130655.1|	-	0.00085	18.9	0.1	0.0014	18.1	0.1	1.4	1	0	0	1	1	1	1	HTH	domain
HTH_24	PF13412.1	gi|257052822|ref|YP_003130655.1|	-	0.003	16.9	0.0	0.005	16.1	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
FUR	PF01475.14	gi|257052822|ref|YP_003130655.1|	-	0.01	15.7	0.0	0.015	15.2	0.0	1.2	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
HTH_AsnC-type	PF13404.1	gi|257052822|ref|YP_003130655.1|	-	0.041	13.4	0.6	0.1	12.1	0.4	1.7	1	1	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
HTH_8	PF02954.14	gi|257052822|ref|YP_003130655.1|	-	0.052	13.0	0.1	0.7	9.4	0.1	2.2	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	Fis	family
LolA	PF03548.10	gi|257052823|ref|YP_003130656.1|	-	2.2e-05	24.1	0.0	0.0016	18.0	0.0	2.2	2	0	0	2	2	2	2	Outer	membrane	lipoprotein	carrier	protein	LolA
DUF2092	PF09865.4	gi|257052823|ref|YP_003130656.1|	-	0.0031	16.6	0.1	0.005	15.9	0.1	1.3	1	0	0	1	1	1	1	Predicted	periplasmic	protein	(DUF2092)
DUF4367	PF14285.1	gi|257052823|ref|YP_003130656.1|	-	0.012	14.8	0.0	0.041	13.2	0.0	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4367)
LPAM_1	PF08139.7	gi|257052823|ref|YP_003130656.1|	-	0.63	10.3	3.0	1.1	9.5	2.1	1.3	1	0	0	1	1	1	0	Prokaryotic	membrane	lipoprotein	lipid	attachment	site
HMA	PF00403.21	gi|257052824|ref|YP_003130657.1|	-	4.1e-18	65.2	0.9	4.5e-18	65.1	0.6	1.0	1	0	0	1	1	1	1	Heavy-metal-associated	domain
Nup35_RRM_2	PF14605.1	gi|257052824|ref|YP_003130657.1|	-	0.024	14.3	0.0	0.028	14.1	0.0	1.1	1	0	0	1	1	1	0	Nup53/35/40-type	RNA	recognition	motif
SLBB	PF10531.4	gi|257052824|ref|YP_003130657.1|	-	0.084	12.7	0.1	0.17	11.7	0.0	1.6	2	0	0	2	2	2	0	SLBB	domain
DUF2997	PF11211.3	gi|257052824|ref|YP_003130657.1|	-	0.38	10.1	3.6	0.31	10.4	1.7	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2997)
HTH_AsnC-type	PF13404.1	gi|257052825|ref|YP_003130658.1|	-	5.2e-16	57.8	0.1	5.2e-16	57.8	0.1	2.6	3	0	0	3	3	3	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.1	gi|257052825|ref|YP_003130658.1|	-	2.3e-15	55.7	0.0	6.3e-15	54.2	0.0	1.8	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.2	gi|257052825|ref|YP_003130658.1|	-	1.3e-06	27.9	0.1	2.4e-06	27.1	0.1	1.4	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.17	gi|257052825|ref|YP_003130658.1|	-	2.1e-06	27.3	0.0	3.1e-06	26.7	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.15	gi|257052825|ref|YP_003130658.1|	-	2e-05	24.1	0.0	2.8e-05	23.6	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.2	gi|257052825|ref|YP_003130658.1|	-	5.9e-05	22.7	0.2	0.00014	21.6	0.0	1.6	2	0	0	2	2	2	1	Helix-turn-helix	domain
Arc_trans_TRASH	PF08394.5	gi|257052825|ref|YP_003130658.1|	-	0.0002	21.4	2.0	0.00029	20.9	1.4	1.3	1	0	0	1	1	1	1	Archaeal	TRASH	domain
YHS	PF04945.8	gi|257052825|ref|YP_003130658.1|	-	0.0011	18.8	0.3	0.0018	18.0	0.2	1.3	1	0	0	1	1	1	1	YHS	domain
zf-FCS	PF06467.9	gi|257052825|ref|YP_003130658.1|	-	0.0016	17.9	0.9	0.0034	16.9	0.5	1.6	2	0	0	2	2	2	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
TrmB	PF01978.14	gi|257052825|ref|YP_003130658.1|	-	0.0017	17.9	0.0	0.0031	17.1	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.5	gi|257052825|ref|YP_003130658.1|	-	0.0023	17.4	0.0	0.0042	16.6	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
LIM	PF00412.17	gi|257052825|ref|YP_003130658.1|	-	0.0056	16.7	1.0	0.0095	15.9	0.7	1.4	1	0	0	1	1	1	1	LIM	domain
HTH_27	PF13463.1	gi|257052825|ref|YP_003130658.1|	-	0.0066	16.7	0.0	0.013	15.8	0.0	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
ATPase-cat_bd	PF12156.3	gi|257052825|ref|YP_003130658.1|	-	0.025	15.0	1.3	0.048	14.2	0.9	1.4	1	0	0	1	1	1	0	Putative	metal-binding	domain	of	cation	transport	ATPase
HTH_34	PF13601.1	gi|257052825|ref|YP_003130658.1|	-	0.032	14.2	0.0	0.05	13.6	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF3330	PF11809.3	gi|257052825|ref|YP_003130658.1|	-	2.1	8.2	5.6	1.8	8.4	2.6	1.8	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF3330)
Hydrolase	PF00702.21	gi|257052826|ref|YP_003130659.1|	-	7e-57	193.2	9.1	1.7e-56	192.0	6.3	1.7	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
E1-E2_ATPase	PF00122.15	gi|257052826|ref|YP_003130659.1|	-	3e-50	170.3	0.2	6.9e-50	169.2	0.2	1.6	1	0	0	1	1	1	1	E1-E2	ATPase
HMA	PF00403.21	gi|257052826|ref|YP_003130659.1|	-	2.8e-23	81.8	0.3	8e-12	45.1	0.0	3.0	3	0	0	3	3	3	2	Heavy-metal-associated	domain
HAD	PF12710.2	gi|257052826|ref|YP_003130659.1|	-	9.4e-21	74.8	0.0	5.1e-20	72.4	0.0	2.2	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.7	gi|257052826|ref|YP_003130659.1|	-	5e-08	32.8	1.3	0.00088	18.9	0.5	2.7	2	1	1	3	3	3	2	haloacid	dehalogenase-like	hydrolase
Hydrolase_6	PF13344.1	gi|257052826|ref|YP_003130659.1|	-	4e-05	23.4	0.6	0.00031	20.5	0.0	3.0	4	0	0	4	4	4	1	Haloacid	dehalogenase-like	hydrolase
HAD_2	PF13419.1	gi|257052826|ref|YP_003130659.1|	-	0.028	14.6	0.0	0.14	12.3	0.0	2.2	1	1	0	1	1	1	0	Haloacid	dehalogenase-like	hydrolase
NAD_binding_7	PF13241.1	gi|257052827|ref|YP_003130660.1|	-	1.3e-21	76.7	0.0	2.3e-21	75.9	0.0	1.4	1	0	0	1	1	1	1	Putative	NAD(P)-binding
CysG_dimeriser	PF10414.4	gi|257052827|ref|YP_003130660.1|	-	2.9e-05	23.4	1.2	2.9e-05	23.4	0.8	2.1	3	0	0	3	3	3	1	Sirohaem	synthase	dimerisation	region
TPR_19	PF14559.1	gi|257052827|ref|YP_003130660.1|	-	0.026	14.8	0.0	0.062	13.6	0.0	1.7	2	0	0	2	2	2	0	Tetratricopeptide	repeat
TPR_4	PF07721.9	gi|257052827|ref|YP_003130660.1|	-	0.036	14.4	0.7	0.036	14.4	0.5	2.4	2	0	0	2	2	2	0	Tetratricopeptide	repeat
Abhydrolase_5	PF12695.2	gi|257052827|ref|YP_003130660.1|	-	0.086	12.5	0.2	3.2	7.4	0.0	2.4	1	1	0	2	2	2	0	Alpha/beta	hydrolase	family
TPR_14	PF13428.1	gi|257052827|ref|YP_003130660.1|	-	0.12	13.0	1.7	0.3	11.8	0.1	2.5	2	2	1	3	3	3	0	Tetratricopeptide	repeat
NIR_SIR	PF01077.17	gi|257052830|ref|YP_003130663.1|	-	8.6e-39	132.4	0.0	7.1e-26	90.4	0.0	2.3	2	0	0	2	2	2	2	Nitrite	and	sulphite	reductase	4Fe-4S	domain
NIR_SIR_ferr	PF03460.12	gi|257052830|ref|YP_003130663.1|	-	2.8e-34	116.5	0.2	2.6e-17	62.1	0.0	3.3	2	1	0	2	2	2	2	Nitrite/Sulfite	reductase	ferredoxin-like	half	domain
CbiX	PF01903.12	gi|257052832|ref|YP_003130665.1|	-	2.1e-35	120.9	0.1	1.3e-16	60.5	0.0	2.3	2	0	0	2	2	2	2	CbiX
CbiK	PF06180.6	gi|257052832|ref|YP_003130665.1|	-	9.4e-07	28.1	0.0	0.00039	19.6	0.0	2.1	2	0	0	2	2	2	2	Cobalt	chelatase	(CbiK)
Ferrochelatase	PF00762.14	gi|257052832|ref|YP_003130665.1|	-	0.0049	15.8	0.0	0.0097	14.9	0.0	1.5	1	1	0	1	1	1	1	Ferrochelatase
DrsE	PF02635.10	gi|257052832|ref|YP_003130665.1|	-	0.17	11.9	0.1	0.72	9.9	0.0	2.0	2	0	0	2	2	2	0	DsrE/DsrF-like	family
TP_methylase	PF00590.15	gi|257052833|ref|YP_003130666.1|	-	1.8e-49	168.2	4.2	2.3e-49	167.9	2.9	1.1	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
DUF4350	PF14258.1	gi|257052833|ref|YP_003130666.1|	-	0.012	15.8	0.0	0.031	14.4	0.0	1.8	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4350)
Glycos_transf_3	PF00591.16	gi|257052834|ref|YP_003130667.1|	-	4.2e-28	98.4	0.0	6.8e-28	97.7	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family,	a/b	domain
Glycos_trans_3N	PF02885.12	gi|257052834|ref|YP_003130667.1|	-	8.2e-14	50.9	0.1	2e-13	49.6	0.1	1.7	1	0	0	1	1	1	1	Glycosyl	transferase	family,	helical	bundle	domain
Fer4_15	PF13459.1	gi|257052835|ref|YP_003130668.1|	-	0.0007	20.1	0.2	0.0015	19.0	0.1	1.7	1	1	0	1	1	1	1	4Fe-4S	single	cluster	domain
tRNA-synt_2b	PF00587.20	gi|257052836|ref|YP_003130669.1|	-	7.2e-37	126.6	0.0	1.1e-36	126.0	0.0	1.3	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
Seryl_tRNA_N	PF02403.17	gi|257052836|ref|YP_003130669.1|	-	1.8e-29	101.9	4.7	3e-29	101.2	3.3	1.4	1	0	0	1	1	1	1	Seryl-tRNA	synthetase	N-terminal	domain
tRNA-synt_His	PF13393.1	gi|257052836|ref|YP_003130669.1|	-	0.024	13.7	1.8	0.25	10.3	0.0	2.2	2	0	0	2	2	2	0	Histidyl-tRNA	synthetase
DUF342	PF03961.8	gi|257052836|ref|YP_003130669.1|	-	0.026	12.9	1.9	0.038	12.4	1.3	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF342)
PhoU	PF01895.14	gi|257052836|ref|YP_003130669.1|	-	0.063	13.7	1.2	0.17	12.3	0.8	1.8	1	0	0	1	1	1	0	PhoU	domain
PilJ	PF13675.1	gi|257052836|ref|YP_003130669.1|	-	0.11	12.8	0.8	0.31	11.3	0.6	1.8	1	0	0	1	1	1	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
IncA	PF04156.9	gi|257052836|ref|YP_003130669.1|	-	0.15	11.6	6.3	0.29	10.6	4.4	1.5	1	0	0	1	1	1	0	IncA	protein
Mnd1	PF03962.10	gi|257052836|ref|YP_003130669.1|	-	0.46	10.1	6.5	0.8	9.3	4.5	1.3	1	0	0	1	1	1	0	Mnd1	family
TBPIP	PF07106.8	gi|257052836|ref|YP_003130669.1|	-	1	8.8	4.4	1.8	8.0	3.1	1.3	1	0	0	1	1	1	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
Fmp27_WPPW	PF10359.4	gi|257052836|ref|YP_003130669.1|	-	1.1	7.5	3.6	1.7	7.0	2.5	1.1	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
APG6	PF04111.7	gi|257052836|ref|YP_003130669.1|	-	1.2	8.0	6.6	6.4	5.7	5.0	1.7	2	0	0	2	2	2	0	Autophagy	protein	Apg6
DUF1771	PF08590.5	gi|257052836|ref|YP_003130669.1|	-	1.8	8.6	6.2	0.87	9.6	1.3	2.5	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1771)
DUF241	PF03087.9	gi|257052836|ref|YP_003130669.1|	-	1.9	7.9	5.6	3.5	7.0	3.9	1.4	1	0	0	1	1	1	0	Arabidopsis	protein	of	unknown	function
V_ATPase_I	PF01496.14	gi|257052836|ref|YP_003130669.1|	-	5.4	4.7	4.1	2.5	5.8	1.3	1.4	2	0	0	2	2	2	0	V-type	ATPase	116kDa	subunit	family
Lactamase_B	PF00753.22	gi|257052837|ref|YP_003130670.1|	-	2e-16	60.2	8.3	2.5e-16	59.8	5.8	1.2	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.2	gi|257052837|ref|YP_003130670.1|	-	0.00092	18.7	2.3	0.0023	17.5	1.6	1.7	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.1	gi|257052837|ref|YP_003130670.1|	-	0.094	12.4	1.5	0.25	11.0	1.0	1.8	1	1	0	1	1	1	0	Beta-lactamase	superfamily	domain
GST_C_2	PF13410.1	gi|257052837|ref|YP_003130670.1|	-	0.094	12.6	1.6	7	6.6	0.0	2.8	1	1	0	3	3	3	0	Glutathione	S-transferase,	C-terminal	domain
DUF99	PF01949.11	gi|257052839|ref|YP_003130672.1|	-	1.5e-49	167.6	0.0	1.8e-49	167.3	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF99
UDG	PF03167.14	gi|257052840|ref|YP_003130673.1|	-	1.2e-34	119.0	0.0	1.4e-34	118.7	0.0	1.0	1	0	0	1	1	1	1	Uracil	DNA	glycosylase	superfamily
DUF1127	PF06568.6	gi|257052840|ref|YP_003130673.1|	-	0.097	12.1	1.1	0.21	11.0	0.8	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1127)
zf-TFIIB	PF13453.1	gi|257052840|ref|YP_003130673.1|	-	0.29	10.3	1.9	15	4.8	0.1	2.4	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
TraC	PF07820.7	gi|257052841|ref|YP_003130674.1|	-	0.054	13.7	0.1	0.45	10.7	0.0	2.4	2	0	0	2	2	2	0	TraC-like	protein
Response_reg	PF00072.19	gi|257052842|ref|YP_003130675.1|	-	1.3e-16	60.5	0.1	2.1e-16	59.9	0.1	1.3	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HalX	PF08663.5	gi|257052842|ref|YP_003130675.1|	-	9.6e-11	41.5	5.5	2.4e-10	40.2	3.5	1.9	1	1	0	1	1	1	1	HalX	domain
HAUS2	PF15003.1	gi|257052842|ref|YP_003130675.1|	-	0.0063	15.6	0.3	0.0081	15.2	0.2	1.1	1	0	0	1	1	1	1	HAUS	augmin-like	complex	subunit	2
Seryl_tRNA_N	PF02403.17	gi|257052842|ref|YP_003130675.1|	-	0.022	14.7	0.6	0.041	13.9	0.4	1.4	1	0	0	1	1	1	0	Seryl-tRNA	synthetase	N-terminal	domain
DUF2312	PF10073.4	gi|257052842|ref|YP_003130675.1|	-	0.032	13.5	0.3	0.032	13.5	0.2	1.9	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2312)
GAS	PF13851.1	gi|257052842|ref|YP_003130675.1|	-	0.065	12.4	2.2	0.094	11.9	1.5	1.1	1	0	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
TBPIP	PF07106.8	gi|257052842|ref|YP_003130675.1|	-	0.081	12.4	1.9	0.12	11.8	1.3	1.3	1	0	0	1	1	1	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
Prefoldin_2	PF01920.15	gi|257052842|ref|YP_003130675.1|	-	0.29	10.9	3.7	5	6.9	0.3	2.3	1	1	1	2	2	2	0	Prefoldin	subunit
IncA	PF04156.9	gi|257052842|ref|YP_003130675.1|	-	0.44	10.1	3.9	0.61	9.6	2.7	1.2	1	0	0	1	1	1	0	IncA	protein
YgaB	PF14182.1	gi|257052842|ref|YP_003130675.1|	-	0.76	10.0	4.6	2	8.6	2.8	1.8	1	1	0	1	1	1	0	YgaB-like	protein
DUF4140	PF13600.1	gi|257052842|ref|YP_003130675.1|	-	1.4	9.4	5.6	1.6	9.2	1.0	2.5	2	1	1	3	3	3	0	N-terminal	domain	of	unknown	function	(DUF4140)
DUF1192	PF06698.6	gi|257052842|ref|YP_003130675.1|	-	1.6	8.5	5.4	2.5	7.9	0.6	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1192)
HATPase_c	PF02518.21	gi|257052843|ref|YP_003130676.1|	-	1.8e-21	75.9	0.1	6.8e-21	74.0	0.0	2.0	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_9	PF13426.1	gi|257052843|ref|YP_003130676.1|	-	1.4e-19	70.3	0.2	1.3e-12	47.9	0.0	3.4	2	1	0	2	2	2	2	PAS	domain
PAS_4	PF08448.5	gi|257052843|ref|YP_003130676.1|	-	4.3e-19	68.5	8.1	4.9e-13	49.0	0.4	4.0	3	1	0	3	3	3	2	PAS	fold
PAS	PF00989.19	gi|257052843|ref|YP_003130676.1|	-	7.9e-16	57.8	0.4	1.3e-09	37.7	0.0	4.1	3	1	0	3	3	3	2	PAS	fold
PAS_8	PF13188.1	gi|257052843|ref|YP_003130676.1|	-	8.5e-12	44.4	0.3	1.4e-05	24.7	0.0	3.1	3	0	0	3	3	3	2	PAS	domain
HisKA	PF00512.20	gi|257052843|ref|YP_003130676.1|	-	5.3e-09	35.9	1.1	5.3e-09	35.9	0.7	2.7	3	0	0	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_3	PF08447.6	gi|257052843|ref|YP_003130676.1|	-	7.2e-09	35.6	0.1	3e-08	33.6	0.0	2.1	2	0	0	2	2	1	1	PAS	fold
PAS_7	PF12860.2	gi|257052843|ref|YP_003130676.1|	-	0.00034	20.5	2.6	0.3	11.1	0.0	3.9	2	2	3	5	5	5	2	PAS	fold
HATPase_c_2	PF13581.1	gi|257052843|ref|YP_003130676.1|	-	0.00039	20.2	0.0	0.001	18.8	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
PAS_10	PF13596.1	gi|257052843|ref|YP_003130676.1|	-	0.00048	20.3	0.0	0.022	15.0	0.0	2.7	2	0	0	2	2	2	1	PAS	domain
HATPase_c_3	PF13589.1	gi|257052843|ref|YP_003130676.1|	-	0.0013	18.4	0.0	0.0041	16.7	0.0	1.8	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
DUF77	PF01910.12	gi|257052843|ref|YP_003130676.1|	-	0.97	9.1	3.2	14	5.4	0.0	3.0	2	1	1	3	3	3	0	Domain	of	unknown	function	DUF77
CBS	PF00571.23	gi|257052844|ref|YP_003130677.1|	-	1.1e-18	66.6	0.2	8e-10	38.3	0.0	2.3	2	0	0	2	2	2	2	CBS	domain
H_kinase_N	PF12282.3	gi|257052844|ref|YP_003130677.1|	-	0.062	12.9	0.0	0.14	11.7	0.0	1.6	2	0	0	2	2	2	0	Signal	transduction	histidine	kinase
Response_reg	PF00072.19	gi|257052845|ref|YP_003130678.1|	-	2.8e-20	72.3	0.2	4.5e-20	71.7	0.2	1.3	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HalX	PF08663.5	gi|257052845|ref|YP_003130678.1|	-	3.6e-08	33.2	0.2	3.6e-08	33.2	0.2	2.2	2	1	0	2	2	2	1	HalX	domain
PSD4	PF07631.6	gi|257052845|ref|YP_003130678.1|	-	0.06	13.7	0.0	0.088	13.1	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1592)
PAS_4	PF08448.5	gi|257052846|ref|YP_003130679.1|	-	9.3e-13	48.1	0.5	2.3e-12	46.9	0.1	1.9	2	0	0	2	2	2	1	PAS	fold
PAS	PF00989.19	gi|257052846|ref|YP_003130679.1|	-	2.6e-05	23.9	0.0	5.7e-05	22.8	0.0	1.6	1	0	0	1	1	1	1	PAS	fold
PAS_9	PF13426.1	gi|257052846|ref|YP_003130679.1|	-	8.4e-05	22.8	0.0	0.00019	21.7	0.0	1.6	1	0	0	1	1	1	1	PAS	domain
PAS_7	PF12860.2	gi|257052846|ref|YP_003130679.1|	-	0.0063	16.5	0.1	0.037	14.0	0.0	2.4	2	1	1	3	3	3	1	PAS	fold
ADH_zinc_N	PF00107.21	gi|257052846|ref|YP_003130679.1|	-	0.046	13.2	0.7	0.1	12.1	0.2	1.8	2	0	0	2	2	2	0	Zinc-binding	dehydrogenase
GATase	PF00117.23	gi|257052847|ref|YP_003130680.1|	-	1.9e-31	108.9	0.0	2.2e-31	108.8	0.0	1.0	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
GATase_3	PF07685.9	gi|257052847|ref|YP_003130680.1|	-	7.8e-10	38.5	0.2	2.2e-09	37.0	0.1	1.7	1	1	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
SNO	PF01174.14	gi|257052847|ref|YP_003130680.1|	-	8.3e-07	28.8	0.0	0.018	14.6	0.0	2.1	2	0	0	2	2	2	2	SNO	glutamine	amidotransferase	family
Peptidase_C26	PF07722.8	gi|257052847|ref|YP_003130680.1|	-	3.5e-05	23.3	0.4	0.0068	15.8	0.1	2.6	2	1	0	2	2	2	2	Peptidase	C26
DJ-1_PfpI	PF01965.19	gi|257052847|ref|YP_003130680.1|	-	0.0067	15.8	0.0	0.015	14.7	0.0	1.6	2	0	0	2	2	2	1	DJ-1/PfpI	family
Ribonuc_L-PSP	PF01042.16	gi|257052849|ref|YP_003130682.1|	-	6.6e-40	135.6	2.0	7.4e-40	135.4	1.4	1.0	1	0	0	1	1	1	1	Endoribonuclease	L-PSP
DUF3383	PF11863.3	gi|257052849|ref|YP_003130682.1|	-	0.046	12.4	0.2	0.05	12.2	0.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3383)
DUF1615	PF07759.7	gi|257052849|ref|YP_003130682.1|	-	0.069	11.8	0.0	0.079	11.7	0.0	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1615)
YjgF_endoribonc	PF14588.1	gi|257052849|ref|YP_003130682.1|	-	0.17	11.8	0.6	0.62	9.9	0.4	1.9	1	1	0	1	1	1	0	YjgF/chorismate_mutase-like,	putative	endoribonuclease
DUF348	PF03990.9	gi|257052849|ref|YP_003130682.1|	-	0.18	11.3	3.3	0.32	10.6	0.8	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF348)
DUF350	PF03994.9	gi|257052850|ref|YP_003130683.1|	-	0.44	10.3	3.7	2.3	8.0	2.8	1.9	1	1	1	2	2	2	0	Domain	of	Unknown	Function	(DUF350)
Fer2	PF00111.22	gi|257052851|ref|YP_003130684.1|	-	2.4e-15	56.0	0.4	3.3e-15	55.5	0.3	1.2	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_4	PF13510.1	gi|257052851|ref|YP_003130684.1|	-	0.1	12.4	0.1	0.2	11.5	0.1	1.6	1	1	0	1	1	1	0	2Fe-2S	iron-sulfur	cluster	binding	domain
Arc_PepC_II	PF06847.6	gi|257052852|ref|YP_003130685.1|	-	3.8e-16	59.2	0.0	7e-16	58.4	0.0	1.4	1	0	0	1	1	1	1	Archaeal	Peptidase	A24	C-terminus	Type	II
Peptidase_A24	PF01478.13	gi|257052852|ref|YP_003130685.1|	-	1.6e-08	34.6	11.8	1.6e-08	34.6	8.2	2.0	2	0	0	2	2	2	1	Type	IV	leader	peptidase	family
PRA-CH	PF01502.13	gi|257052853|ref|YP_003130686.1|	-	7.3e-36	121.6	0.2	9.7e-36	121.2	0.1	1.2	1	0	0	1	1	1	1	Phosphoribosyl-AMP	cyclohydrolase
Flagellin_N	PF00669.15	gi|257052854|ref|YP_003130687.1|	-	0.067	12.9	0.0	0.59	9.9	0.0	2.2	1	1	1	2	2	2	0	Bacterial	flagellin	N-terminal	helical	region
Mt_ATP-synt_D	PF05873.7	gi|257052854|ref|YP_003130687.1|	-	0.088	12.4	0.9	2.3	7.8	0.2	2.8	2	1	1	3	3	3	0	ATP	synthase	D	chain,	mitochondrial	(ATP5H)
bPH_2	PF03703.9	gi|257052855|ref|YP_003130688.1|	-	5.7e-20	71.1	0.1	1e-19	70.3	0.1	1.4	1	0	0	1	1	1	1	Bacterial	PH	domain
MliC	PF09864.4	gi|257052855|ref|YP_003130688.1|	-	0.67	9.7	2.7	3.3	7.5	0.1	2.5	2	1	0	2	2	2	0	Membrane-bound	lysozyme-inhibitor	of	c-type	lysozyme
Pribosyltran	PF00156.22	gi|257052856|ref|YP_003130689.1|	-	2.5e-11	43.3	2.4	6.5e-11	42.0	1.7	1.7	1	1	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.1	gi|257052856|ref|YP_003130689.1|	-	0.00038	19.7	0.1	0.00052	19.2	0.1	1.2	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
PRTase_2	PF15609.1	gi|257052856|ref|YP_003130689.1|	-	0.018	14.3	0.2	0.032	13.5	0.1	1.4	1	0	0	1	1	1	0	Phosphoribosyl	transferase
Pribosyltran	PF00156.22	gi|257052857|ref|YP_003130690.1|	-	7e-13	48.3	0.2	1.1e-12	47.7	0.1	1.3	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
HTH_3	PF01381.17	gi|257052857|ref|YP_003130690.1|	-	2.3e-05	24.1	0.0	0.00014	21.6	0.0	2.3	3	0	0	3	3	3	1	Helix-turn-helix
HTH_31	PF13560.1	gi|257052857|ref|YP_003130690.1|	-	0.0016	18.6	1.5	0.003	17.7	0.3	2.1	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_Tnp_4	PF13613.1	gi|257052857|ref|YP_003130690.1|	-	0.041	13.4	0.1	0.11	12.0	0.0	1.7	2	0	0	2	2	2	0	Helix-turn-helix	of	DDE	superfamily	endonuclease
Xan_ur_permease	PF00860.15	gi|257052858|ref|YP_003130691.1|	-	1.1e-29	103.1	41.7	1.4e-29	102.8	28.9	1.1	1	0	0	1	1	1	1	Permease	family
GST_N_3	PF13417.1	gi|257052859|ref|YP_003130692.1|	-	1.4e-12	47.6	0.0	1.5e-12	47.5	0.0	1.0	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
Glutaredoxin	PF00462.19	gi|257052859|ref|YP_003130692.1|	-	4.1e-12	45.9	0.0	6e-12	45.3	0.0	1.3	1	0	0	1	1	1	1	Glutaredoxin
GST_N_2	PF13409.1	gi|257052859|ref|YP_003130692.1|	-	5.2e-08	32.7	0.0	6e-08	32.5	0.0	1.1	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
DUF836	PF05768.9	gi|257052859|ref|YP_003130692.1|	-	0.037	14.2	0.1	0.042	14.0	0.1	1.4	1	1	0	1	1	1	0	Glutaredoxin-like	domain	(DUF836)
Epimerase_2	PF02350.14	gi|257052860|ref|YP_003130693.1|	-	1.6e-74	250.7	0.0	2e-74	250.4	0.0	1.0	1	0	0	1	1	1	1	UDP-N-acetylglucosamine	2-epimerase
HTH_3	PF01381.17	gi|257052861|ref|YP_003130694.1|	-	1.2e-09	37.8	0.0	2.3e-09	36.9	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix
HTH_19	PF12844.2	gi|257052861|ref|YP_003130694.1|	-	1.1e-06	28.6	0.0	2e-06	27.7	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_31	PF13560.1	gi|257052861|ref|YP_003130694.1|	-	2.6e-06	27.5	0.0	8.9e-06	25.8	0.0	1.9	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.7	gi|257052861|ref|YP_003130694.1|	-	0.00033	20.2	0.1	0.00097	18.7	0.0	1.8	2	0	0	2	2	1	1	HTH	domain
HTH_25	PF13413.1	gi|257052861|ref|YP_003130694.1|	-	0.0021	17.6	0.0	0.0046	16.5	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_23	PF13384.1	gi|257052861|ref|YP_003130694.1|	-	0.0049	16.4	0.0	0.015	14.9	0.0	1.8	1	0	0	1	1	1	1	Homeodomain-like	domain
Sigma70_r4	PF04545.11	gi|257052861|ref|YP_003130694.1|	-	0.0091	15.2	0.0	0.02	14.1	0.0	1.6	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_28	PF13518.1	gi|257052861|ref|YP_003130694.1|	-	0.019	14.9	0.0	0.043	13.8	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_37	PF13744.1	gi|257052861|ref|YP_003130694.1|	-	0.031	14.0	0.0	1.4	8.7	0.0	2.7	3	0	0	3	3	2	0	Helix-turn-helix	domain
MarR	PF01047.17	gi|257052861|ref|YP_003130694.1|	-	0.057	13.1	0.0	2.9	7.6	0.0	2.3	2	0	0	2	2	2	0	MarR	family
HTH_10	PF04967.7	gi|257052861|ref|YP_003130694.1|	-	0.094	12.3	0.0	0.2	11.2	0.0	1.5	1	0	0	1	1	1	0	HTH	DNA	binding	domain
NUMOD1	PF07453.8	gi|257052861|ref|YP_003130694.1|	-	0.11	12.4	0.0	0.21	11.5	0.0	1.5	1	0	0	1	1	1	0	NUMOD1	domain
HTH_AraC	PF00165.18	gi|257052861|ref|YP_003130694.1|	-	0.14	11.9	0.0	0.3	10.9	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	proteins,	AraC	family
HTH_36	PF13730.1	gi|257052861|ref|YP_003130694.1|	-	0.18	11.9	0.0	3.3	7.9	0.0	2.2	2	0	0	2	2	2	0	Helix-turn-helix	domain
DUF1743	PF08489.6	gi|257052862|ref|YP_003130695.1|	-	2e-34	117.8	0.0	4e-34	116.8	0.0	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1743)
OrfB_Zn_ribbon	PF07282.6	gi|257052862|ref|YP_003130695.1|	-	0.0079	15.8	0.5	0.02	14.5	0.3	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
C1_1	PF00130.17	gi|257052862|ref|YP_003130695.1|	-	0.03	14.0	0.1	0.053	13.2	0.0	1.3	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
tRNA_anti-codon	PF01336.20	gi|257052862|ref|YP_003130695.1|	-	0.036	13.9	0.1	0.12	12.2	0.0	1.8	1	1	1	2	2	2	0	OB-fold	nucleic	acid	binding	domain
IBR	PF01485.16	gi|257052862|ref|YP_003130695.1|	-	0.041	13.7	0.1	0.064	13.1	0.1	1.3	1	0	0	1	1	1	0	IBR	domain
tRNA_anti-like	PF12869.2	gi|257052862|ref|YP_003130695.1|	-	0.077	12.4	0.0	0.2	11.1	0.0	1.6	2	0	0	2	2	2	0	tRNA_anti-like
Zn_Tnp_IS1595	PF12760.2	gi|257052862|ref|YP_003130695.1|	-	0.08	12.7	1.8	0.17	11.7	1.3	1.5	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
zinc-ribbons_6	PF07191.7	gi|257052862|ref|YP_003130695.1|	-	0.086	12.6	0.2	0.15	11.8	0.1	1.3	1	0	0	1	1	1	0	zinc-ribbons
Imm49	PF15660.1	gi|257052863|ref|YP_003130696.1|	-	0.043	13.8	0.2	0.089	12.8	0.2	1.5	1	0	0	1	1	1	0	Immunity	protein	49
FtsJ	PF01728.14	gi|257052864|ref|YP_003130697.1|	-	1.2e-52	178.4	0.0	1.5e-52	178.2	0.0	1.1	1	0	0	1	1	1	1	FtsJ-like	methyltransferase
TRAM	PF01938.15	gi|257052864|ref|YP_003130697.1|	-	7.5e-12	44.8	2.5	1.4e-11	44.0	1.7	1.5	1	0	0	1	1	1	1	TRAM	domain
Methyltransf_31	PF13847.1	gi|257052864|ref|YP_003130697.1|	-	0.0032	17.0	0.0	0.0071	15.9	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|257052864|ref|YP_003130697.1|	-	0.0052	16.8	0.2	0.011	15.8	0.2	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|257052864|ref|YP_003130697.1|	-	0.0098	16.4	0.2	0.025	15.1	0.1	1.7	1	1	0	1	1	1	1	Methyltransferase	domain
NSP13	PF06460.7	gi|257052864|ref|YP_003130697.1|	-	0.012	14.4	0.0	0.016	14.0	0.0	1.1	1	0	0	1	1	1	0	Coronavirus	NSP13
Methyltransf_23	PF13489.1	gi|257052864|ref|YP_003130697.1|	-	0.014	15.0	0.0	0.022	14.4	0.0	1.4	1	1	0	1	1	1	0	Methyltransferase	domain
TrkA_N	PF02254.13	gi|257052864|ref|YP_003130697.1|	-	0.025	14.5	0.1	0.047	13.6	0.0	1.4	1	0	0	1	1	1	0	TrkA-N	domain
CDC48_N	PF02359.13	gi|257052864|ref|YP_003130697.1|	-	0.087	12.7	0.1	0.83	9.6	0.0	2.4	1	1	0	1	1	1	0	Cell	division	protein	48	(CDC48),	N-terminal	domain
CmcI	PF04989.7	gi|257052864|ref|YP_003130697.1|	-	0.13	11.5	0.0	0.2	10.9	0.0	1.2	1	0	0	1	1	1	0	Cephalosporin	hydroxylase
YbbR	PF07949.7	gi|257052864|ref|YP_003130697.1|	-	0.58	10.3	4.2	13	5.9	0.2	2.8	3	0	0	3	3	3	0	YbbR-like	protein
Antitoxin-MazE	PF04014.13	gi|257052864|ref|YP_003130697.1|	-	0.9	9.3	6.7	5.9	6.7	0.4	2.9	3	0	0	3	3	3	0	Antidote-toxin	recognition	MazE
Metallophos_2	PF12850.2	gi|257052865|ref|YP_003130698.1|	-	3.5e-31	108.1	0.8	4.3e-31	107.8	0.5	1.1	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.23	gi|257052865|ref|YP_003130698.1|	-	6.3e-11	42.0	3.8	8.8e-11	41.5	2.7	1.2	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Amino_oxidase	PF01593.19	gi|257052866|ref|YP_003130699.1|	-	5.4e-19	68.5	0.3	9.5e-17	61.2	0.2	2.0	1	1	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.1	gi|257052866|ref|YP_003130699.1|	-	2e-12	46.9	0.0	5.3e-12	45.5	0.0	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.19	gi|257052866|ref|YP_003130699.1|	-	2e-10	40.1	0.0	1.9e-05	23.7	0.0	2.2	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.1	gi|257052866|ref|YP_003130699.1|	-	2.1e-05	24.6	0.0	0.018	15.0	0.0	2.3	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.14	gi|257052866|ref|YP_003130699.1|	-	5.5e-05	22.3	0.3	8.7e-05	21.7	0.2	1.3	1	0	0	1	1	1	1	FAD	binding	domain
NAD_binding_9	PF13454.1	gi|257052866|ref|YP_003130699.1|	-	0.00033	20.4	0.0	0.056	13.2	0.0	2.4	2	0	0	2	2	2	1	FAD-NAD(P)-binding
Pyr_redox	PF00070.22	gi|257052866|ref|YP_003130699.1|	-	0.00081	19.7	0.1	0.0026	18.1	0.0	2.0	2	0	0	2	2	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FMO-like	PF00743.14	gi|257052866|ref|YP_003130699.1|	-	0.0011	17.2	0.0	0.0015	16.8	0.0	1.1	1	0	0	1	1	1	1	Flavin-binding	monooxygenase-like
Thi4	PF01946.12	gi|257052866|ref|YP_003130699.1|	-	0.0015	17.6	0.1	0.0025	16.9	0.1	1.3	1	0	0	1	1	1	1	Thi4	family
FAD_binding_2	PF00890.19	gi|257052866|ref|YP_003130699.1|	-	0.0042	16.0	0.2	0.0082	15.0	0.2	1.5	1	0	0	1	1	1	1	FAD	binding	domain
Pyr_redox_2	PF07992.9	gi|257052866|ref|YP_003130699.1|	-	0.0043	16.9	0.0	0.0074	16.1	0.0	1.4	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.13	gi|257052866|ref|YP_003130699.1|	-	0.013	15.1	0.0	0.02	14.5	0.0	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
HI0933_like	PF03486.9	gi|257052866|ref|YP_003130699.1|	-	0.029	12.8	0.0	0.075	11.4	0.0	1.6	2	0	0	2	2	2	0	HI0933-like	protein
UDPG_MGDP_dh_N	PF03721.9	gi|257052866|ref|YP_003130699.1|	-	0.083	12.2	0.1	0.16	11.3	0.0	1.5	2	0	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
DUF3708	PF12501.3	gi|257052869|ref|YP_003130702.1|	-	0.69	9.7	5.9	0.23	11.2	0.2	2.5	2	0	0	2	2	2	0	Phosphate	ATP-binding	cassette	transporter
MGS	PF02142.17	gi|257052870|ref|YP_003130703.1|	-	1.9e-15	56.5	0.0	2.3e-15	56.3	0.0	1.1	1	0	0	1	1	1	1	MGS-like	domain
DUF3240	PF11582.3	gi|257052870|ref|YP_003130703.1|	-	0.11	12.4	0.0	0.16	11.9	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3240)
HTH_10	PF04967.7	gi|257052872|ref|YP_003130705.1|	-	1e-14	53.8	0.0	2.2e-14	52.7	0.0	1.6	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Sigma70_r4	PF04545.11	gi|257052872|ref|YP_003130705.1|	-	0.00094	18.4	0.2	0.0032	16.7	0.0	1.9	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_AsnC-type	PF13404.1	gi|257052872|ref|YP_003130705.1|	-	0.021	14.3	0.3	0.05	13.1	0.2	1.6	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
MarR_2	PF12802.2	gi|257052872|ref|YP_003130705.1|	-	0.031	13.9	0.2	0.1	12.2	0.1	2.0	2	1	0	2	2	2	0	MarR	family
UPF0122	PF04297.9	gi|257052872|ref|YP_003130705.1|	-	0.11	12.4	0.0	0.18	11.8	0.0	1.3	1	0	0	1	1	1	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
Sigma70_r4_2	PF08281.7	gi|257052872|ref|YP_003130705.1|	-	0.14	11.6	0.0	0.64	9.5	0.0	2.1	2	0	0	2	2	2	0	Sigma-70,	region	4
dUTPase	PF00692.14	gi|257052873|ref|YP_003130706.1|	-	2.7e-10	39.7	0.0	4e-10	39.2	0.0	1.2	1	0	0	1	1	1	1	dUTPase
HATPase_c	PF02518.21	gi|257052874|ref|YP_003130707.1|	-	3.1e-13	49.4	0.1	4.9e-13	48.7	0.0	1.3	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_4	PF08448.5	gi|257052874|ref|YP_003130707.1|	-	2e-09	37.4	0.2	5.8e-08	32.7	0.2	2.4	1	1	0	1	1	1	1	PAS	fold
PAS	PF00989.19	gi|257052874|ref|YP_003130707.1|	-	3e-09	36.6	0.1	1.1e-07	31.5	0.0	2.8	2	1	0	2	2	2	1	PAS	fold
PAS_9	PF13426.1	gi|257052874|ref|YP_003130707.1|	-	7.6e-09	35.8	0.1	6.8e-07	29.6	0.1	2.5	1	1	0	1	1	1	1	PAS	domain
PAS_8	PF13188.1	gi|257052874|ref|YP_003130707.1|	-	7.7e-06	25.5	0.0	2.8e-05	23.8	0.0	1.9	1	0	0	1	1	1	1	PAS	domain
HATPase_c_2	PF13581.1	gi|257052874|ref|YP_003130707.1|	-	0.00029	20.6	0.6	0.00072	19.3	0.1	1.8	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
PAS_7	PF12860.2	gi|257052874|ref|YP_003130707.1|	-	0.0004	20.3	0.0	0.84	9.6	0.0	2.7	1	1	1	2	2	2	2	PAS	fold
HATPase_c_5	PF14501.1	gi|257052874|ref|YP_003130707.1|	-	0.013	15.2	0.0	0.022	14.4	0.0	1.3	1	0	0	1	1	1	0	GHKL	domain
HATPase_c_3	PF13589.1	gi|257052874|ref|YP_003130707.1|	-	0.019	14.6	0.0	0.035	13.7	0.0	1.4	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.20	gi|257052874|ref|YP_003130707.1|	-	0.054	13.5	0.3	0.11	12.4	0.2	1.5	1	0	0	1	1	1	0	His	Kinase	A	(phospho-acceptor)	domain
Aconitase	PF00330.15	gi|257052875|ref|YP_003130708.1|	-	3.4e-99	332.4	0.1	2.2e-68	230.8	0.0	2.2	1	1	1	2	2	2	2	Aconitase	family	(aconitate	hydratase)
Aconitase_C	PF00694.14	gi|257052875|ref|YP_003130708.1|	-	1.5e-20	73.6	0.0	2.8e-20	72.7	0.0	1.4	1	0	0	1	1	1	1	Aconitase	C-terminal	domain
Pyr_redox_2	PF07992.9	gi|257052876|ref|YP_003130709.1|	-	6.6e-41	140.4	1.4	1.1e-40	139.6	0.9	1.4	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.17	gi|257052876|ref|YP_003130709.1|	-	1e-36	125.2	0.0	3.5e-36	123.5	0.0	2.0	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox	PF00070.22	gi|257052876|ref|YP_003130709.1|	-	9.1e-23	80.4	2.2	2.8e-19	69.3	0.1	2.8	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Biotin_lipoyl	PF00364.17	gi|257052876|ref|YP_003130709.1|	-	8.2e-13	47.7	0.2	8.2e-13	47.7	0.2	2.0	2	0	0	2	2	1	1	Biotin-requiring	enzyme
Pyr_redox_3	PF13738.1	gi|257052876|ref|YP_003130709.1|	-	9e-09	35.6	0.0	3.7e-07	30.3	0.0	2.2	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|257052876|ref|YP_003130709.1|	-	4e-08	32.5	10.5	0.0079	15.1	0.9	4.4	3	1	1	4	4	4	4	FAD	dependent	oxidoreductase
GIDA	PF01134.17	gi|257052876|ref|YP_003130709.1|	-	1.6e-07	30.5	3.5	2.3e-05	23.4	2.6	2.7	2	1	0	2	2	2	1	Glucose	inhibited	division	protein	A
FAD_binding_2	PF00890.19	gi|257052876|ref|YP_003130709.1|	-	4.6e-07	29.0	5.1	2.4e-05	23.3	1.2	3.2	3	0	0	3	3	3	1	FAD	binding	domain
FAD_oxidored	PF12831.2	gi|257052876|ref|YP_003130709.1|	-	5.4e-07	29.0	2.3	1.1e-06	28.0	1.6	1.5	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.14	gi|257052876|ref|YP_003130709.1|	-	5.8e-07	28.8	6.3	0.0049	15.9	0.4	3.3	3	0	0	3	3	3	3	FAD	binding	domain
HI0933_like	PF03486.9	gi|257052876|ref|YP_003130709.1|	-	3.3e-06	25.8	1.9	0.00053	18.5	0.5	3.2	3	0	0	3	3	3	1	HI0933-like	protein
NAD_binding_8	PF13450.1	gi|257052876|ref|YP_003130709.1|	-	2.3e-05	24.3	2.1	0.0046	16.9	0.7	2.7	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
UDPG_MGDP_dh_N	PF03721.9	gi|257052876|ref|YP_003130709.1|	-	0.00053	19.4	2.7	0.0023	17.3	0.0	2.7	3	0	0	3	3	3	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
XdhC_C	PF13478.1	gi|257052876|ref|YP_003130709.1|	-	0.00059	20.1	0.5	0.11	12.8	0.0	3.0	3	1	0	3	3	2	1	XdhC	Rossmann	domain
3HCDH_N	PF02737.13	gi|257052876|ref|YP_003130709.1|	-	0.00069	19.3	1.4	0.013	15.2	0.0	2.6	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
AlaDh_PNT_C	PF01262.16	gi|257052876|ref|YP_003130709.1|	-	0.00075	19.1	0.3	0.13	11.7	0.0	2.4	2	0	0	2	2	2	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
Lycopene_cycl	PF05834.7	gi|257052876|ref|YP_003130709.1|	-	0.0025	16.7	2.9	0.16	10.8	1.1	2.8	2	1	0	2	2	2	1	Lycopene	cyclase	protein
Thi4	PF01946.12	gi|257052876|ref|YP_003130709.1|	-	0.012	14.7	2.9	0.033	13.2	0.1	2.5	3	0	0	3	3	3	0	Thi4	family
Trp_halogenase	PF04820.9	gi|257052876|ref|YP_003130709.1|	-	0.028	13.0	1.1	0.042	12.4	0.1	1.7	2	0	0	2	2	2	0	Tryptophan	halogenase
NAD_binding_7	PF13241.1	gi|257052876|ref|YP_003130709.1|	-	0.11	12.7	1.4	13	6.1	0.0	3.2	3	1	1	4	4	4	0	Putative	NAD(P)-binding
NAD_binding_9	PF13454.1	gi|257052876|ref|YP_003130709.1|	-	0.39	10.4	5.1	7.9	6.2	0.2	3.3	3	0	0	3	3	3	0	FAD-NAD(P)-binding
TrkA_N	PF02254.13	gi|257052876|ref|YP_003130709.1|	-	0.42	10.6	3.6	1.4	8.9	0.0	2.9	3	0	0	3	3	2	0	TrkA-N	domain
CMD	PF02627.15	gi|257052877|ref|YP_003130710.1|	-	4.6e-19	68.0	1.1	6.1e-19	67.6	0.8	1.1	1	0	0	1	1	1	1	Carboxymuconolactone	decarboxylase	family
SLAC1	PF03595.12	gi|257052878|ref|YP_003130711.1|	-	1.3e-55	188.3	48.7	1.5e-55	188.1	33.7	1.0	1	0	0	1	1	1	1	Voltage-dependent	anion	channel
TruD	PF01142.13	gi|257052878|ref|YP_003130711.1|	-	0.15	10.6	0.0	0.21	10.1	0.0	1.1	1	0	0	1	1	1	0	tRNA	pseudouridine	synthase	D	(TruD)
DUF3918	PF13056.1	gi|257052878|ref|YP_003130711.1|	-	0.53	9.6	2.5	29	4.0	0.1	3.3	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3918)
Cons_hypoth698	PF03601.9	gi|257052879|ref|YP_003130712.1|	-	4.7e-59	199.5	17.2	5.6e-59	199.2	11.9	1.0	1	0	0	1	1	1	1	Conserved	hypothetical	protein	698
Vma12	PF11712.3	gi|257052879|ref|YP_003130712.1|	-	0.42	10.3	2.8	1	9.0	0.1	2.4	2	0	0	2	2	2	0	Endoplasmic	reticulum-based	factor	for	assembly	of	V-ATPase
AhpC-TSA	PF00578.16	gi|257052880|ref|YP_003130713.1|	-	9.8e-33	112.4	0.0	1.3e-32	112.1	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.5	gi|257052880|ref|YP_003130713.1|	-	8.7e-16	57.7	0.0	1.2e-15	57.3	0.0	1.1	1	0	0	1	1	1	1	Redoxin
1-cysPrx_C	PF10417.4	gi|257052880|ref|YP_003130713.1|	-	1e-07	31.4	0.0	2e-07	30.5	0.0	1.5	1	0	0	1	1	1	1	C-terminal	domain	of	1-Cys	peroxiredoxin
ResB	PF05140.9	gi|257052882|ref|YP_003130715.1|	-	0.18	10.2	0.4	0.25	9.8	0.3	1.1	1	0	0	1	1	1	0	ResB-like	family
Pyr_redox_2	PF07992.9	gi|257052884|ref|YP_003130717.1|	-	1.1e-27	97.2	1.1	1.4e-27	96.9	0.7	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|257052884|ref|YP_003130717.1|	-	1.7e-14	53.9	1.2	5.3e-10	39.5	0.1	3.2	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|257052884|ref|YP_003130717.1|	-	1.2e-08	35.2	0.9	4e-05	23.7	0.1	3.3	2	1	1	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|257052884|ref|YP_003130717.1|	-	2.8e-07	29.7	5.9	0.042	12.7	0.1	3.7	3	1	1	4	4	4	3	FAD	dependent	oxidoreductase
HI0933_like	PF03486.9	gi|257052884|ref|YP_003130717.1|	-	2.8e-05	22.8	0.1	0.043	12.2	0.0	3.0	3	1	0	3	3	3	2	HI0933-like	protein
NAD_binding_9	PF13454.1	gi|257052884|ref|YP_003130717.1|	-	0.0015	18.2	3.6	3.3	7.4	0.1	3.4	2	1	0	3	3	3	2	FAD-NAD(P)-binding
NAD_binding_8	PF13450.1	gi|257052884|ref|YP_003130717.1|	-	0.014	15.3	0.6	1.5	8.9	0.0	2.6	2	0	0	2	2	2	0	NAD(P)-binding	Rossmann-like	domain
Trp_halogenase	PF04820.9	gi|257052884|ref|YP_003130717.1|	-	0.024	13.2	0.8	0.18	10.3	0.0	2.1	2	0	0	2	2	2	0	Tryptophan	halogenase
K_oxygenase	PF13434.1	gi|257052884|ref|YP_003130717.1|	-	0.043	12.7	0.0	0.22	10.3	0.0	1.9	1	1	1	2	2	2	0	L-lysine	6-monooxygenase	(NADPH-requiring)
GIDA	PF01134.17	gi|257052884|ref|YP_003130717.1|	-	2.2	7.0	4.1	41	2.8	0.0	3.6	3	1	1	4	4	4	0	Glucose	inhibited	division	protein	A
KaiC	PF06745.8	gi|257052885|ref|YP_003130718.1|	-	0.0017	17.5	0.0	0.0028	16.8	0.0	1.3	1	0	0	1	1	1	1	KaiC
AAA_25	PF13481.1	gi|257052885|ref|YP_003130718.1|	-	0.096	12.0	0.9	0.32	10.3	0.3	2.2	1	1	1	2	2	2	0	AAA	domain
HTH_5	PF01022.15	gi|257052886|ref|YP_003130719.1|	-	7.8e-16	57.4	0.2	1.3e-15	56.7	0.0	1.4	2	0	0	2	2	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.2	gi|257052886|ref|YP_003130719.1|	-	4.7e-12	45.5	0.0	7.4e-12	44.8	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|257052886|ref|YP_003130719.1|	-	2.5e-11	42.7	0.0	3.8e-11	42.2	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.5	gi|257052886|ref|YP_003130719.1|	-	6.1e-09	35.3	0.1	9.5e-09	34.7	0.1	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
TrmB	PF01978.14	gi|257052886|ref|YP_003130719.1|	-	4.2e-07	29.5	0.0	6.2e-07	29.0	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|257052886|ref|YP_003130719.1|	-	1.7e-06	27.5	0.0	2.9e-06	26.8	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.1	gi|257052886|ref|YP_003130719.1|	-	3.2e-05	24.1	0.1	5.1e-05	23.5	0.1	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_26	PF13443.1	gi|257052886|ref|YP_003130719.1|	-	0.00011	22.2	0.1	0.0003	20.9	0.0	1.8	2	0	0	2	2	1	1	Cro/C1-type	HTH	DNA-binding	domain
RepL	PF05732.6	gi|257052886|ref|YP_003130719.1|	-	0.00024	20.3	0.0	0.00041	19.5	0.0	1.4	1	1	0	1	1	1	1	Firmicute	plasmid	replication	protein	(RepL)
HTH_34	PF13601.1	gi|257052886|ref|YP_003130719.1|	-	0.00024	21.0	0.0	0.00035	20.5	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_11	PF08279.7	gi|257052886|ref|YP_003130719.1|	-	0.00032	20.2	0.1	0.00047	19.7	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
HTH_AsnC-type	PF13404.1	gi|257052886|ref|YP_003130719.1|	-	0.00055	19.4	0.1	0.00098	18.6	0.1	1.4	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
Rrf2	PF02082.15	gi|257052886|ref|YP_003130719.1|	-	0.0011	19.0	0.0	0.0015	18.6	0.0	1.3	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_43	PF09904.4	gi|257052886|ref|YP_003130719.1|	-	0.0012	18.6	0.0	0.0016	18.1	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_23	PF13384.1	gi|257052886|ref|YP_003130719.1|	-	0.0012	18.3	0.0	0.0019	17.7	0.0	1.3	1	0	0	1	1	1	1	Homeodomain-like	domain
MarR	PF01047.17	gi|257052886|ref|YP_003130719.1|	-	0.0015	18.1	0.3	0.0033	17.1	0.0	1.7	2	0	0	2	2	1	1	MarR	family
DUF4423	PF14394.1	gi|257052886|ref|YP_003130719.1|	-	0.002	17.6	0.0	0.0024	17.4	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4423)
PaaX	PF07848.7	gi|257052886|ref|YP_003130719.1|	-	0.0022	17.9	0.0	0.0033	17.4	0.0	1.3	1	0	0	1	1	1	1	PaaX-like	protein
Penicillinase_R	PF03965.11	gi|257052886|ref|YP_003130719.1|	-	0.0042	17.1	0.1	0.0051	16.8	0.1	1.2	1	0	0	1	1	1	1	Penicillinase	repressor
Mga	PF05043.8	gi|257052886|ref|YP_003130719.1|	-	0.0042	17.3	0.0	0.0063	16.7	0.0	1.3	1	0	0	1	1	1	1	Mga	helix-turn-helix	domain
HTH_28	PF13518.1	gi|257052886|ref|YP_003130719.1|	-	0.0057	16.6	0.0	0.0086	16.0	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
Arg_repressor	PF01316.16	gi|257052886|ref|YP_003130719.1|	-	0.0064	16.0	0.1	0.01	15.3	0.0	1.4	1	0	0	1	1	1	1	Arginine	repressor,	DNA	binding	domain
Cullin	PF00888.17	gi|257052886|ref|YP_003130719.1|	-	0.011	14.3	0.0	0.011	14.2	0.0	1.1	1	0	0	1	1	1	0	Cullin	family
HTH_DeoR	PF08220.7	gi|257052886|ref|YP_003130719.1|	-	0.013	15.0	0.2	0.023	14.2	0.1	1.4	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
TFIIE_alpha	PF02002.12	gi|257052886|ref|YP_003130719.1|	-	0.013	15.0	0.1	0.021	14.3	0.1	1.4	1	1	0	1	1	1	0	TFIIE	alpha	subunit
RP-C	PF03428.8	gi|257052886|ref|YP_003130719.1|	-	0.014	14.8	0.0	0.024	14.0	0.0	1.4	1	1	0	1	1	1	0	Replication	protein	C	N-terminal	domain
HTH_Crp_2	PF13545.1	gi|257052886|ref|YP_003130719.1|	-	0.016	15.0	0.0	0.028	14.2	0.0	1.5	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
Sulfolobus_pRN	PF05584.6	gi|257052886|ref|YP_003130719.1|	-	0.037	14.0	0.1	0.057	13.3	0.1	1.3	1	0	0	1	1	1	0	Sulfolobus	plasmid	regulatory	protein
HTH_9	PF08221.6	gi|257052886|ref|YP_003130719.1|	-	0.046	13.6	0.1	0.079	12.8	0.1	1.4	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
HTH_3	PF01381.17	gi|257052886|ref|YP_003130719.1|	-	0.054	13.3	0.0	0.098	12.5	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix
FUR	PF01475.14	gi|257052886|ref|YP_003130719.1|	-	0.061	13.2	0.0	0.12	12.3	0.0	1.5	1	1	0	1	1	1	0	Ferric	uptake	regulator	family
HxlR	PF01638.12	gi|257052886|ref|YP_003130719.1|	-	0.062	12.9	0.1	0.086	12.4	0.1	1.3	1	1	0	1	1	1	0	HxlR-like	helix-turn-helix
HTH_29	PF13551.1	gi|257052886|ref|YP_003130719.1|	-	0.086	12.9	0.0	0.11	12.6	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn	helix
DUF3489	PF11994.3	gi|257052886|ref|YP_003130719.1|	-	0.092	12.7	0.0	0.12	12.3	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3489)
S10_plectin	PF03501.10	gi|257052886|ref|YP_003130719.1|	-	0.098	12.5	0.0	0.12	12.2	0.0	1.2	1	0	0	1	1	1	0	Plectin/S10	domain
HTH_37	PF13744.1	gi|257052886|ref|YP_003130719.1|	-	0.12	12.1	0.0	0.21	11.3	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
TrmB	PF01978.14	gi|257052887|ref|YP_003130720.1|	-	4.2e-10	39.1	0.1	5.8e-10	38.7	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.2	gi|257052887|ref|YP_003130720.1|	-	3.5e-09	36.3	0.9	6.5e-09	35.4	0.6	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|257052887|ref|YP_003130720.1|	-	2.7e-07	30.0	1.6	6.3e-07	28.8	0.7	1.9	1	1	1	2	2	2	1	IclR	helix-turn-helix	domain
HTH_11	PF08279.7	gi|257052887|ref|YP_003130720.1|	-	1.3e-05	24.7	0.2	5.2e-05	22.8	0.0	2.1	2	1	1	3	3	3	1	HTH	domain
FUR	PF01475.14	gi|257052887|ref|YP_003130720.1|	-	0.0011	18.9	0.1	0.0026	17.6	0.0	1.6	1	1	1	2	2	2	1	Ferric	uptake	regulator	family
HTH_23	PF13384.1	gi|257052887|ref|YP_003130720.1|	-	0.0027	17.3	0.0	0.0085	15.7	0.0	1.8	2	0	0	2	2	2	1	Homeodomain-like	domain
MarR_2	PF12802.2	gi|257052887|ref|YP_003130720.1|	-	0.0038	16.8	0.2	0.0063	16.1	0.1	1.3	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.1	gi|257052887|ref|YP_003130720.1|	-	0.01	15.2	0.0	0.017	14.4	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_29	PF13551.1	gi|257052887|ref|YP_003130720.1|	-	0.023	14.8	0.1	0.072	13.2	0.0	1.8	1	1	1	2	2	2	0	Winged	helix-turn	helix
HTH_22	PF13309.1	gi|257052887|ref|YP_003130720.1|	-	0.023	14.4	0.2	1.2	8.8	0.1	2.7	2	0	0	2	2	2	0	HTH	domain
HTH_7	PF02796.10	gi|257052887|ref|YP_003130720.1|	-	0.025	14.4	0.0	0.17	11.7	0.0	2.1	1	1	1	2	2	2	0	Helix-turn-helix	domain	of	resolvase
Cas_Cas02710	PF09670.5	gi|257052887|ref|YP_003130720.1|	-	0.045	12.3	0.8	0.046	12.3	0.5	1.1	1	0	0	1	1	1	0	CRISPR-associated	protein	(Cas_Cas02710)
HTH_36	PF13730.1	gi|257052887|ref|YP_003130720.1|	-	0.07	13.2	0.1	0.1	12.7	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
PadR	PF03551.9	gi|257052887|ref|YP_003130720.1|	-	0.12	12.2	0.0	0.33	10.7	0.0	1.7	2	0	0	2	2	2	0	Transcriptional	regulator	PadR-like	family
DUF892	PF05974.7	gi|257052887|ref|YP_003130720.1|	-	0.34	10.6	7.0	0.89	9.3	4.0	2.2	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF892)
Lactamase_B	PF00753.22	gi|257052888|ref|YP_003130721.1|	-	1.7e-06	27.8	2.4	5.4e-06	26.1	1.7	2.0	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.2	gi|257052888|ref|YP_003130721.1|	-	0.00063	19.3	0.0	0.00083	18.9	0.0	1.4	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Nitro_FeMo-Co	PF02579.12	gi|257052889|ref|YP_003130722.1|	-	3.3e-22	78.3	0.1	3.3e-22	78.3	0.0	1.5	2	0	0	2	2	2	1	Dinitrogenase	iron-molybdenum	cofactor
Toxin_49	PF15529.1	gi|257052889|ref|YP_003130722.1|	-	0.032	14.1	0.1	0.032	14.1	0.0	1.9	2	0	0	2	2	2	0	Putative	toxin	49
GRP	PF07172.6	gi|257052889|ref|YP_003130722.1|	-	3.5	8.1	15.8	1.3	9.5	9.2	1.5	2	0	0	2	2	2	0	Glycine	rich	protein	family
UPF0066	PF01980.11	gi|257052890|ref|YP_003130723.1|	-	1.3e-35	121.9	0.0	1.6e-35	121.6	0.0	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0066
ABC_tran	PF00005.22	gi|257052891|ref|YP_003130724.1|	-	1.4e-32	112.8	0.0	1.9e-32	112.4	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|257052891|ref|YP_003130724.1|	-	8.5e-09	35.7	0.0	3e-05	24.1	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
AAA_16	PF13191.1	gi|257052891|ref|YP_003130724.1|	-	1.1e-05	25.5	0.1	1.7e-05	24.9	0.1	1.3	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_29	PF13555.1	gi|257052891|ref|YP_003130724.1|	-	0.00021	20.7	0.1	0.00042	19.7	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.1	gi|257052891|ref|YP_003130724.1|	-	0.001	19.4	0.0	0.0015	18.9	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|257052891|ref|YP_003130724.1|	-	0.0018	17.5	0.2	0.052	12.7	0.1	2.2	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
Mg_chelatase	PF01078.16	gi|257052891|ref|YP_003130724.1|	-	0.0078	15.3	0.0	0.016	14.4	0.0	1.6	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
Zeta_toxin	PF06414.7	gi|257052891|ref|YP_003130724.1|	-	0.068	12.2	0.0	0.13	11.3	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
AAA_33	PF13671.1	gi|257052891|ref|YP_003130724.1|	-	0.087	12.6	0.0	0.16	11.8	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
DUF258	PF03193.11	gi|257052891|ref|YP_003130724.1|	-	0.098	11.8	0.0	0.15	11.2	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA_PrkA	PF08298.6	gi|257052891|ref|YP_003130724.1|	-	0.17	10.5	0.0	0.25	9.9	0.0	1.2	1	0	0	1	1	1	0	PrkA	AAA	domain
FecCD	PF01032.13	gi|257052892|ref|YP_003130725.1|	-	2.4e-91	305.8	36.4	2.8e-91	305.6	25.2	1.0	1	0	0	1	1	1	1	FecCD	transport	family
RhodobacterPufX	PF11511.3	gi|257052892|ref|YP_003130725.1|	-	0.079	12.3	3.7	0.21	11.0	0.1	2.8	2	0	0	2	2	2	0	Intrinsic	membrane	protein	PufX
DUF378	PF04070.7	gi|257052892|ref|YP_003130725.1|	-	0.29	10.7	10.1	1.5	8.5	0.6	2.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF378)
Peripla_BP_2	PF01497.13	gi|257052893|ref|YP_003130726.1|	-	2.3e-24	85.8	0.4	3e-24	85.4	0.3	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
DUF1628	PF07790.6	gi|257052894|ref|YP_003130727.1|	-	1.8e-08	35.0	0.1	5e-08	33.5	0.1	1.8	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1628)
tRNA-synt_1	PF00133.17	gi|257052895|ref|YP_003130728.1|	-	3.2e-180	600.1	3.3	3.3e-180	600.0	1.7	1.4	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.8	gi|257052895|ref|YP_003130728.1|	-	1.8e-29	102.4	0.0	3.8e-29	101.4	0.0	1.5	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1g	PF09334.6	gi|257052895|ref|YP_003130728.1|	-	3.1e-28	98.5	0.4	4.3e-10	38.8	0.0	3.9	3	1	0	3	3	3	3	tRNA	synthetases	class	I	(M)
tRNA-synt_1_2	PF13603.1	gi|257052895|ref|YP_003130728.1|	-	0.00013	21.3	0.0	0.00031	20.1	0.0	1.6	1	0	0	1	1	1	1	Leucyl-tRNA	synthetase,	Domain	2
Aldo_ket_red	PF00248.16	gi|257052896|ref|YP_003130729.1|	-	4.6e-60	202.8	0.0	5.3e-60	202.6	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
DUF372	PF04036.7	gi|257052897|ref|YP_003130730.1|	-	3.9e-18	64.6	1.1	7.1e-18	63.7	0.7	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF372)
DUF381	PF04038.7	gi|257052897|ref|YP_003130730.1|	-	9.1e-14	51.2	0.3	1.2e-13	50.8	0.2	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF381)
GPW_gp25	PF04965.9	gi|257052897|ref|YP_003130730.1|	-	0.0079	15.7	0.0	0.01	15.3	0.0	1.3	1	0	0	1	1	1	1	Gene	25-like	lysozyme
Phe_tRNA-synt_N	PF02912.13	gi|257052900|ref|YP_003130733.1|	-	0.054	13.2	0.0	0.17	11.5	0.0	1.8	1	0	0	1	1	1	0	Aminoacyl	tRNA	synthetase	class	II,	N-terminal	domain
tRNA-synt_1f	PF01921.13	gi|257052900|ref|YP_003130733.1|	-	0.062	11.9	0.0	0.072	11.7	0.0	1.1	1	0	0	1	1	1	0	tRNA	synthetases	class	I	(K)
Ead_Ea22	PF13935.1	gi|257052900|ref|YP_003130733.1|	-	0.15	12.4	1.4	1.1	9.6	0.1	2.2	1	1	1	2	2	2	0	Ead/Ea22-like	protein
DUF883	PF05957.8	gi|257052900|ref|YP_003130733.1|	-	0.22	11.9	1.2	2	8.8	0.1	2.4	1	1	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF883)
YfcL	PF08891.6	gi|257052900|ref|YP_003130733.1|	-	0.5	10.3	2.9	1.1	9.2	0.4	2.5	2	1	0	2	2	2	0	YfcL	protein
Creatininase	PF02633.9	gi|257052901|ref|YP_003130734.1|	-	1.9e-72	243.1	3.4	2.2e-72	242.9	2.3	1.0	1	0	0	1	1	1	1	Creatinine	amidohydrolase
DUF192	PF02643.10	gi|257052902|ref|YP_003130735.1|	-	6.5e-29	99.7	0.0	7.9e-29	99.5	0.0	1.1	1	0	0	1	1	1	1	Uncharacterized	ACR,	COG1430
DUF373	PF04123.8	gi|257052903|ref|YP_003130736.1|	-	3.5e-110	368.2	9.3	4.2e-110	367.9	6.4	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF373)
SecD_SecF	PF02355.11	gi|257052903|ref|YP_003130736.1|	-	0.64	9.1	4.8	1	8.5	2.4	1.9	1	1	1	2	2	2	0	Protein	export	membrane	protein
DUF2583	PF10762.4	gi|257052903|ref|YP_003130736.1|	-	1.4	9.1	9.2	0.13	12.4	0.4	2.9	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF2583)
Peptidase_M29	PF02073.10	gi|257052904|ref|YP_003130737.1|	-	1.9e-101	339.7	1.0	2.2e-101	339.5	0.7	1.0	1	0	0	1	1	1	1	Thermophilic	metalloprotease	(M29)
Herpes_UL6	PF01763.11	gi|257052904|ref|YP_003130737.1|	-	0.12	10.5	0.0	0.17	10.0	0.0	1.2	1	0	0	1	1	1	0	Herpesvirus	UL6	like
SPW	PF03779.9	gi|257052905|ref|YP_003130738.1|	-	0.0059	15.9	0.2	0.0088	15.3	0.2	1.3	1	0	0	1	1	1	1	SPW	repeat
P12	PF12669.2	gi|257052905|ref|YP_003130738.1|	-	0.22	11.7	0.8	0.27	11.4	0.6	1.2	1	0	0	1	1	1	0	Virus	attachment	protein	p12	family
ODV-E18	PF10717.4	gi|257052905|ref|YP_003130738.1|	-	0.24	10.8	0.9	0.29	10.6	0.6	1.1	1	0	0	1	1	1	0	Occlusion-derived	virus	envelope	protein	ODV-E18
Adeno_E3_CR2	PF02439.10	gi|257052905|ref|YP_003130738.1|	-	0.75	9.3	3.1	1.3	8.5	2.2	1.4	1	0	0	1	1	1	0	Adenovirus	E3	region	protein	CR2
Metallophos_2	PF12850.2	gi|257052906|ref|YP_003130739.1|	-	1.5e-24	86.5	0.1	1.8e-24	86.3	0.1	1.0	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.23	gi|257052906|ref|YP_003130739.1|	-	1.6e-07	30.9	1.2	6.7e-05	22.3	0.8	2.6	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Usp	PF00582.21	gi|257052906|ref|YP_003130739.1|	-	0.012	15.8	1.4	0.022	14.9	0.5	2.0	1	1	1	2	2	2	0	Universal	stress	protein	family
NIF3	PF01784.13	gi|257052906|ref|YP_003130739.1|	-	0.076	12.5	0.0	5.4	6.5	0.0	2.1	1	1	0	2	2	2	0	NIF3	(NGG1p	interacting	factor	3)
Glyco_trans_4_4	PF13579.1	gi|257052906|ref|YP_003130739.1|	-	0.22	11.6	6.4	0.45	10.6	4.4	1.6	1	1	0	1	1	1	0	Glycosyl	transferase	4-like	domain
ABC2_membrane_2	PF12679.2	gi|257052907|ref|YP_003130740.1|	-	1.7e-14	53.3	9.1	2.3e-14	52.9	6.3	1.3	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.2	gi|257052907|ref|YP_003130740.1|	-	3.3e-13	49.3	8.0	4.3e-13	48.9	5.5	1.1	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_5	PF13346.1	gi|257052907|ref|YP_003130740.1|	-	1.8e-06	27.4	1.0	2.8e-06	26.7	0.1	1.7	2	0	0	2	2	2	1	ABC-2	family	transporter	protein
TMEM18	PF14770.1	gi|257052907|ref|YP_003130740.1|	-	0.004	16.6	0.0	0.012	15.1	0.0	1.8	1	0	0	1	1	1	1	Transmembrane	protein	18
ABC2_membrane	PF01061.19	gi|257052907|ref|YP_003130740.1|	-	0.01	14.9	9.9	0.023	13.8	6.8	1.5	1	1	0	1	1	1	0	ABC-2	type	transporter
ABC2_membrane_3	PF12698.2	gi|257052907|ref|YP_003130740.1|	-	0.57	9.1	13.8	0.054	12.5	6.0	1.8	1	1	1	2	2	2	0	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.2	gi|257052908|ref|YP_003130741.1|	-	4.1e-12	45.5	10.1	4.1e-12	45.5	7.0	1.3	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.2	gi|257052908|ref|YP_003130741.1|	-	3.6e-11	42.6	6.8	5e-11	42.2	4.7	1.2	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.2	gi|257052908|ref|YP_003130741.1|	-	0.0003	19.9	5.5	0.0003	19.9	3.8	1.3	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_5	PF13346.1	gi|257052908|ref|YP_003130741.1|	-	0.00073	18.8	0.8	0.0012	18.2	0.6	1.5	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.19	gi|257052908|ref|YP_003130741.1|	-	0.068	12.3	5.6	0.11	11.6	3.9	1.4	1	0	0	1	1	1	0	ABC-2	type	transporter
ABC_tran	PF00005.22	gi|257052909|ref|YP_003130742.1|	-	1.7e-25	89.8	0.0	2.6e-25	89.3	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|257052909|ref|YP_003130742.1|	-	2.1e-16	60.7	0.1	4.8e-11	43.1	0.0	2.2	1	1	1	2	2	2	2	AAA	domain
AAA_23	PF13476.1	gi|257052909|ref|YP_003130742.1|	-	0.0038	17.5	0.0	0.0086	16.4	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|257052909|ref|YP_003130742.1|	-	0.0039	16.4	0.1	0.34	10.1	0.0	2.2	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.1	gi|257052909|ref|YP_003130742.1|	-	0.014	14.4	0.0	0.063	12.3	0.0	1.8	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_22	PF13401.1	gi|257052909|ref|YP_003130742.1|	-	0.036	14.1	0.2	0.31	11.1	0.1	2.2	1	1	0	1	1	1	0	AAA	domain
SRP54	PF00448.17	gi|257052909|ref|YP_003130742.1|	-	0.04	13.3	0.1	0.071	12.5	0.1	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
SbcCD_C	PF13558.1	gi|257052909|ref|YP_003130742.1|	-	0.044	13.7	0.0	0.24	11.3	0.0	2.1	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_29	PF13555.1	gi|257052909|ref|YP_003130742.1|	-	0.079	12.5	0.0	0.15	11.5	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
DUF258	PF03193.11	gi|257052909|ref|YP_003130742.1|	-	0.11	11.6	0.0	0.14	11.3	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA_33	PF13671.1	gi|257052909|ref|YP_003130742.1|	-	0.12	12.2	0.2	0.22	11.3	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_10	PF12846.2	gi|257052909|ref|YP_003130742.1|	-	0.13	11.6	0.4	0.22	10.9	0.3	1.6	1	1	0	1	1	1	0	AAA-like	domain
DUF562	PF04763.7	gi|257052910|ref|YP_003130743.1|	-	0.15	11.3	0.1	0.3	10.3	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF562)
DUF3052	PF11253.3	gi|257052910|ref|YP_003130743.1|	-	0.28	10.7	2.3	0.4	10.2	0.4	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3052)
IncA	PF04156.9	gi|257052911|ref|YP_003130744.1|	-	0.0021	17.6	0.0	0.0022	17.6	0.0	1.1	1	0	0	1	1	1	1	IncA	protein
DUF4118	PF13493.1	gi|257052912|ref|YP_003130745.1|	-	2.8	8.1	7.0	1.9	8.6	2.5	1.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4118)
VPEP	PF07589.6	gi|257052912|ref|YP_003130745.1|	-	6.6	6.7	16.0	4.1	7.4	5.9	2.9	2	1	0	2	2	2	0	PEP-CTERM	motif
ACR_tran	PF00873.14	gi|257052914|ref|YP_003130747.1|	-	0.073	10.4	0.7	0.092	10.1	0.2	1.3	1	1	0	1	1	1	0	AcrB/AcrD/AcrF	family
RskA	PF10099.4	gi|257052915|ref|YP_003130748.1|	-	0.018	14.8	0.2	0.037	13.7	0.2	1.5	1	0	0	1	1	1	0	Anti-sigma-K	factor	rskA
DUF4307	PF14155.1	gi|257052915|ref|YP_003130748.1|	-	0.11	12.2	3.2	0.15	11.8	0.8	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4307)
ABC_tran	PF00005.22	gi|257052916|ref|YP_003130749.1|	-	2.6e-34	118.4	0.0	3.9e-34	117.9	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.7	gi|257052916|ref|YP_003130749.1|	-	1.7e-18	66.7	0.1	4.2e-18	65.4	0.1	1.7	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_18	PF13238.1	gi|257052916|ref|YP_003130749.1|	-	2.9e-05	24.3	0.1	8e-05	22.9	0.0	1.8	2	0	0	2	2	1	1	AAA	domain
AAA_21	PF13304.1	gi|257052916|ref|YP_003130749.1|	-	3.1e-05	24.0	0.0	0.019	14.9	0.0	2.2	1	1	0	2	2	2	2	AAA	domain
AAA_22	PF13401.1	gi|257052916|ref|YP_003130749.1|	-	0.0011	19.1	0.0	0.0054	16.8	0.0	2.1	1	1	0	1	1	1	1	AAA	domain
PRK	PF00485.13	gi|257052916|ref|YP_003130749.1|	-	0.0012	18.4	0.0	0.002	17.7	0.0	1.3	1	0	0	1	1	1	1	Phosphoribulokinase	/	Uridine	kinase	family
AAA_16	PF13191.1	gi|257052916|ref|YP_003130749.1|	-	0.0022	18.0	0.1	0.021	14.8	0.0	2.3	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_17	PF13207.1	gi|257052916|ref|YP_003130749.1|	-	0.0022	18.7	0.6	0.016	16.0	0.0	2.4	2	1	0	2	2	2	1	AAA	domain
AAA	PF00004.24	gi|257052916|ref|YP_003130749.1|	-	0.0035	17.5	0.0	0.0067	16.6	0.0	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_25	PF13481.1	gi|257052916|ref|YP_003130749.1|	-	0.0039	16.6	0.1	0.02	14.3	0.1	2.2	1	1	0	1	1	1	1	AAA	domain
NB-ARC	PF00931.17	gi|257052916|ref|YP_003130749.1|	-	0.036	12.9	0.0	0.06	12.2	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
Rad17	PF03215.10	gi|257052916|ref|YP_003130749.1|	-	0.044	12.4	0.0	0.064	11.9	0.0	1.2	1	0	0	1	1	1	0	Rad17	cell	cycle	checkpoint	protein
KaiC	PF06745.8	gi|257052916|ref|YP_003130749.1|	-	0.056	12.5	0.3	0.55	9.3	0.1	2.1	2	0	0	2	2	2	0	KaiC
Mg_chelatase	PF01078.16	gi|257052916|ref|YP_003130749.1|	-	0.056	12.5	0.0	0.094	11.8	0.0	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
NACHT	PF05729.7	gi|257052916|ref|YP_003130749.1|	-	0.066	12.8	0.0	0.12	12.0	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
UPF0079	PF02367.12	gi|257052916|ref|YP_003130749.1|	-	0.078	12.6	0.1	0.15	11.6	0.1	1.4	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
ATP-synt_ab	PF00006.20	gi|257052916|ref|YP_003130749.1|	-	0.078	12.4	0.0	0.12	11.8	0.0	1.2	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
AAA_29	PF13555.1	gi|257052916|ref|YP_003130749.1|	-	0.11	12.0	0.1	0.23	11.0	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
SKI	PF01202.17	gi|257052916|ref|YP_003130749.1|	-	0.12	12.2	0.0	0.23	11.3	0.0	1.5	1	0	0	1	1	1	0	Shikimate	kinase
Methyltransf_32	PF13679.1	gi|257052916|ref|YP_003130749.1|	-	0.13	11.9	0.0	0.21	11.2	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
NTPase_1	PF03266.10	gi|257052916|ref|YP_003130749.1|	-	0.18	11.5	0.0	0.31	10.7	0.0	1.4	1	0	0	1	1	1	0	NTPase
ABC_tran	PF00005.22	gi|257052917|ref|YP_003130750.1|	-	6.6e-25	88.0	0.0	1.3e-24	87.0	0.0	1.5	1	1	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.7	gi|257052917|ref|YP_003130750.1|	-	1.4e-15	57.4	0.1	2.5e-15	56.5	0.1	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.1	gi|257052917|ref|YP_003130750.1|	-	7.9e-09	35.8	0.0	4.5e-05	23.5	0.0	2.1	1	1	0	2	2	2	2	AAA	domain
AAA_22	PF13401.1	gi|257052917|ref|YP_003130750.1|	-	0.0014	18.8	2.7	0.033	14.3	0.8	2.5	2	1	0	2	2	1	1	AAA	domain
ATP-synt_ab	PF00006.20	gi|257052917|ref|YP_003130750.1|	-	0.0014	18.2	0.0	0.0031	17.0	0.0	1.5	1	1	0	1	1	1	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
SMC_N	PF02463.14	gi|257052917|ref|YP_003130750.1|	-	0.0015	17.8	0.2	0.14	11.3	0.0	2.1	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.1	gi|257052917|ref|YP_003130750.1|	-	0.0017	18.3	0.1	0.0066	16.4	0.0	1.8	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_25	PF13481.1	gi|257052917|ref|YP_003130750.1|	-	0.0049	16.2	1.7	0.47	9.8	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
UPF0079	PF02367.12	gi|257052917|ref|YP_003130750.1|	-	0.0056	16.3	0.0	0.0099	15.5	0.0	1.3	1	0	0	1	1	1	1	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_5	PF07728.9	gi|257052917|ref|YP_003130750.1|	-	0.017	14.8	0.2	0.069	12.8	0.1	2.0	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
NACHT	PF05729.7	gi|257052917|ref|YP_003130750.1|	-	0.027	14.1	0.1	0.049	13.2	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
AAA	PF00004.24	gi|257052917|ref|YP_003130750.1|	-	0.029	14.5	0.0	0.09	12.9	0.0	1.8	2	0	0	2	2	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_10	PF12846.2	gi|257052917|ref|YP_003130750.1|	-	0.031	13.6	0.1	0.088	12.2	0.0	1.7	1	1	0	1	1	1	0	AAA-like	domain
MobB	PF03205.9	gi|257052917|ref|YP_003130750.1|	-	0.045	13.4	0.1	0.082	12.6	0.0	1.4	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_18	PF13238.1	gi|257052917|ref|YP_003130750.1|	-	0.048	13.9	0.1	0.13	12.5	0.0	1.8	2	1	0	2	2	2	0	AAA	domain
AAA_29	PF13555.1	gi|257052917|ref|YP_003130750.1|	-	0.064	12.7	0.0	0.14	11.6	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
DUF258	PF03193.11	gi|257052917|ref|YP_003130750.1|	-	0.068	12.3	0.0	0.13	11.4	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
NTPase_1	PF03266.10	gi|257052917|ref|YP_003130750.1|	-	0.098	12.3	0.0	0.21	11.2	0.0	1.5	1	0	0	1	1	1	0	NTPase
NB-ARC	PF00931.17	gi|257052917|ref|YP_003130750.1|	-	0.11	11.3	0.1	0.4	9.4	0.0	1.7	2	0	0	2	2	2	0	NB-ARC	domain
zf-CCCH_2	PF14608.1	gi|257052917|ref|YP_003130750.1|	-	1	9.4	3.0	1.5	8.9	0.4	2.1	2	0	0	2	2	2	0	Zinc	finger	C-x8-C-x5-C-x3-H	type
BPD_transp_1	PF00528.17	gi|257052918|ref|YP_003130751.1|	-	2.7e-23	82.4	9.2	2.7e-23	82.4	6.4	1.7	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.2	gi|257052918|ref|YP_003130751.1|	-	4.1e-06	26.0	0.0	1.7e-05	24.0	0.0	2.0	1	0	0	1	1	1	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
DUF1673	PF07895.6	gi|257052918|ref|YP_003130751.1|	-	0.03	13.8	2.9	0.1	12.1	2.0	1.9	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1673)
BPD_transp_1	PF00528.17	gi|257052919|ref|YP_003130752.1|	-	6.2e-36	123.6	15.5	6.2e-36	123.6	10.8	1.8	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_5	PF00496.17	gi|257052920|ref|YP_003130753.1|	-	1.4e-31	109.7	2.4	2e-30	105.8	1.7	2.1	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
TAT_signal	PF10518.4	gi|257052920|ref|YP_003130753.1|	-	0.038	13.9	0.6	0.092	12.8	0.4	1.7	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
UCR_Fe-S_N	PF10399.4	gi|257052920|ref|YP_003130753.1|	-	0.041	13.0	0.5	0.089	11.9	0.3	1.5	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
MASE1	PF05231.9	gi|257052921|ref|YP_003130754.1|	-	0.42	9.5	6.6	0.48	9.3	4.6	1.1	1	0	0	1	1	1	0	MASE1
YesK	PF14150.1	gi|257052921|ref|YP_003130754.1|	-	0.48	10.5	3.8	0.59	10.2	2.4	1.4	1	1	0	1	1	1	0	YesK-like	protein
Pro_isomerase	PF00160.16	gi|257052922|ref|YP_003130755.1|	-	1.3e-46	158.6	0.0	1.5e-46	158.4	0.0	1.0	1	0	0	1	1	1	1	Cyclophilin	type	peptidyl-prolyl	cis-trans	isomerase/CLD
Voltage_CLC	PF00654.15	gi|257052923|ref|YP_003130756.1|	-	0.0036	16.3	1.9	0.0045	16.0	1.3	1.2	1	0	0	1	1	1	1	Voltage	gated	chloride	channel
Autotransporter	PF03797.14	gi|257052923|ref|YP_003130756.1|	-	0.13	11.5	0.0	0.21	10.9	0.0	1.3	1	0	0	1	1	1	0	Autotransporter	beta-domain
ADH_N	PF08240.7	gi|257052924|ref|YP_003130757.1|	-	4.6e-27	93.9	0.7	1.2e-26	92.6	0.5	1.7	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.21	gi|257052924|ref|YP_003130757.1|	-	1.3e-25	89.4	0.6	2.4e-25	88.5	0.4	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_N_assoc	PF13823.1	gi|257052924|ref|YP_003130757.1|	-	0.00042	19.9	0.0	0.0016	18.0	0.0	2.0	2	0	0	2	2	2	1	Alcohol	dehydrogenase	GroES-associated
NADH_4Fe-4S	PF10589.4	gi|257052924|ref|YP_003130757.1|	-	0.68	9.1	3.8	2.4	7.4	2.3	2.2	1	1	0	1	1	1	0	NADH-ubiquinone	oxidoreductase-F	iron-sulfur	binding	region
DUF63	PF01889.12	gi|257052925|ref|YP_003130758.1|	-	0.026	14.6	0.2	0.029	14.4	0.1	1.1	1	0	0	1	1	1	0	Membrane	protein	of	unknown	function	DUF63
Multi_Drug_Res	PF00893.14	gi|257052925|ref|YP_003130758.1|	-	0.3	11.5	5.0	0.46	10.9	3.5	1.3	1	0	0	1	1	1	0	Small	Multidrug	Resistance	protein
Zn_Tnp_IS1	PF03811.8	gi|257052927|ref|YP_003130760.1|	-	0.074	12.5	0.5	0.24	10.9	0.3	1.9	1	1	0	1	1	1	0	InsA	N-terminal	domain
zf-ribbon_3	PF13248.1	gi|257052927|ref|YP_003130760.1|	-	0.11	11.7	0.8	0.15	11.2	0.1	1.6	2	0	0	2	2	2	0	zinc-ribbon	domain
HalX	PF08663.5	gi|257052928|ref|YP_003130761.1|	-	1.4e-18	66.6	4.6	1.4e-18	66.6	3.2	2.0	2	1	0	2	2	2	1	HalX	domain
Response_reg	PF00072.19	gi|257052928|ref|YP_003130761.1|	-	5.7e-18	64.9	0.4	8.5e-18	64.3	0.3	1.3	1	0	0	1	1	1	1	Response	regulator	receiver	domain
zf-ribbon_3	PF13248.1	gi|257052929|ref|YP_003130762.1|	-	0.0052	15.9	3.0	0.0083	15.3	2.1	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.2	gi|257052929|ref|YP_003130762.1|	-	0.01	15.6	0.3	0.012	15.3	0.2	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
Ribosomal_S14	PF00253.16	gi|257052929|ref|YP_003130762.1|	-	0.024	14.0	4.1	0.033	13.5	2.9	1.2	1	0	0	1	1	1	0	Ribosomal	protein	S14p/S29e
DNA_RNApol_7kD	PF03604.8	gi|257052929|ref|YP_003130762.1|	-	0.15	11.5	0.5	0.15	11.5	0.3	1.7	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
RNA_POL_M_15KD	PF02150.11	gi|257052929|ref|YP_003130762.1|	-	0.49	10.1	2.4	2	8.1	0.0	2.2	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
DUF35_N	PF12172.3	gi|257052929|ref|YP_003130762.1|	-	0.65	9.9	6.3	1	9.3	4.4	1.3	1	0	0	1	1	1	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zinc_ribbon_2	PF13240.1	gi|257052929|ref|YP_003130762.1|	-	0.71	9.4	3.5	2.4	7.7	2.4	1.8	1	1	0	1	1	1	0	zinc-ribbon	domain
KaiC	PF06745.8	gi|257052930|ref|YP_003130763.1|	-	2.4e-38	131.5	0.0	2.7e-38	131.3	0.0	1.0	1	0	0	1	1	1	1	KaiC
AAA_25	PF13481.1	gi|257052930|ref|YP_003130763.1|	-	1e-07	31.5	0.0	1.5e-07	31.0	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
GvpD	PF07088.6	gi|257052930|ref|YP_003130763.1|	-	4.4e-06	25.2	0.0	6.1e-05	21.5	0.0	2.0	1	1	0	1	1	1	1	GvpD	gas	vesicle	protein
AAA_19	PF13245.1	gi|257052930|ref|YP_003130763.1|	-	6.4e-05	22.6	0.0	0.00013	21.6	0.0	1.5	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_10	PF12846.2	gi|257052930|ref|YP_003130763.1|	-	7e-05	22.4	0.0	8e-05	22.2	0.0	1.1	1	0	0	1	1	1	1	AAA-like	domain
Arch_ATPase	PF01637.13	gi|257052930|ref|YP_003130763.1|	-	0.00082	19.1	0.0	0.0014	18.4	0.0	1.3	1	1	0	1	1	1	1	Archaeal	ATPase
IstB_IS21	PF01695.12	gi|257052930|ref|YP_003130763.1|	-	0.0013	18.1	0.0	0.0022	17.4	0.0	1.3	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_33	PF13671.1	gi|257052930|ref|YP_003130763.1|	-	0.0017	18.2	0.1	0.0024	17.7	0.1	1.4	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|257052930|ref|YP_003130763.1|	-	0.0021	18.1	0.3	0.0064	16.6	0.2	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|257052930|ref|YP_003130763.1|	-	0.0023	18.7	0.1	0.0072	17.1	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
AAA_14	PF13173.1	gi|257052930|ref|YP_003130763.1|	-	0.0043	16.9	0.0	0.018	14.9	0.0	1.8	1	1	1	2	2	2	1	AAA	domain
AAA_16	PF13191.1	gi|257052930|ref|YP_003130763.1|	-	0.0046	16.9	0.0	0.0082	16.1	0.0	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA	PF00004.24	gi|257052930|ref|YP_003130763.1|	-	0.0055	16.9	0.7	0.11	12.6	0.5	2.2	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
RecA	PF00154.16	gi|257052930|ref|YP_003130763.1|	-	0.0074	15.3	0.0	0.012	14.6	0.0	1.3	1	0	0	1	1	1	1	recA	bacterial	DNA	recombination	protein
AAA_28	PF13521.1	gi|257052930|ref|YP_003130763.1|	-	0.01	15.7	0.0	0.031	14.2	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
NACHT	PF05729.7	gi|257052930|ref|YP_003130763.1|	-	0.012	15.2	0.0	0.026	14.1	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
AAA_31	PF13614.1	gi|257052930|ref|YP_003130763.1|	-	0.022	14.7	0.0	0.084	12.8	0.0	2.0	1	1	0	1	1	1	0	AAA	domain
T2SE	PF00437.15	gi|257052930|ref|YP_003130763.1|	-	0.023	13.6	0.0	0.037	12.9	0.0	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
Zeta_toxin	PF06414.7	gi|257052930|ref|YP_003130763.1|	-	0.026	13.6	0.0	0.038	13.0	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
DnaB_C	PF03796.10	gi|257052930|ref|YP_003130763.1|	-	0.055	12.3	0.0	0.085	11.7	0.0	1.3	1	0	0	1	1	1	0	DnaB-like	helicase	C	terminal	domain
ABC_tran	PF00005.22	gi|257052930|ref|YP_003130763.1|	-	0.067	13.4	0.0	0.085	13.1	0.0	1.3	1	1	0	1	1	1	0	ABC	transporter
cobW	PF02492.14	gi|257052930|ref|YP_003130763.1|	-	0.075	12.4	0.1	0.13	11.7	0.1	1.7	1	1	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
KTI12	PF08433.5	gi|257052930|ref|YP_003130763.1|	-	0.086	12.0	0.0	0.14	11.3	0.0	1.3	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
AAA_18	PF13238.1	gi|257052930|ref|YP_003130763.1|	-	0.1	12.8	0.4	0.17	12.2	0.3	1.6	1	1	0	1	1	1	0	AAA	domain
CobU	PF02283.11	gi|257052930|ref|YP_003130763.1|	-	0.11	11.8	0.1	9.3	5.6	0.0	2.2	2	0	0	2	2	2	0	Cobinamide	kinase	/	cobinamide	phosphate	guanyltransferase
MobB	PF03205.9	gi|257052930|ref|YP_003130763.1|	-	0.11	12.1	0.0	0.26	10.9	0.0	1.6	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
RNA_helicase	PF00910.17	gi|257052930|ref|YP_003130763.1|	-	0.12	12.5	0.1	0.26	11.4	0.1	1.6	1	1	0	1	1	1	0	RNA	helicase
AAA_30	PF13604.1	gi|257052930|ref|YP_003130763.1|	-	0.12	11.8	0.0	0.19	11.2	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
CarboxypepD_reg	PF13620.1	gi|257052933|ref|YP_003130766.1|	-	1.7e-18	66.4	3.2	1.7e-18	66.4	2.2	3.5	4	1	0	4	4	3	1	Carboxypeptidase	regulatory-like	domain
DUF4480	PF13715.1	gi|257052933|ref|YP_003130766.1|	-	4.5e-13	49.0	0.1	1.7e-12	47.2	0.0	2.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4480)
CARDB	PF07705.6	gi|257052933|ref|YP_003130766.1|	-	1.2e-05	25.2	5.5	1.2e-05	25.2	3.8	3.0	2	2	1	3	3	3	1	CARDB
Cna_B	PF05738.8	gi|257052933|ref|YP_003130766.1|	-	0.00011	21.9	0.8	0.00051	19.7	0.4	2.3	1	1	0	1	1	1	1	Cna	protein	B-type	domain
PEGA	PF08308.6	gi|257052933|ref|YP_003130766.1|	-	0.009	15.7	0.1	0.009	15.7	0.1	3.0	4	0	0	4	4	4	1	PEGA	domain
EF-hand_1	PF00036.27	gi|257052933|ref|YP_003130766.1|	-	0.015	14.5	2.3	3.8	7.0	0.0	3.1	2	0	0	2	2	2	0	EF	hand
Dioxygenase_C	PF00775.16	gi|257052933|ref|YP_003130766.1|	-	0.028	13.6	0.6	1.9	7.6	0.0	2.5	1	1	1	2	2	2	0	Dioxygenase
fn3_3	PF14686.1	gi|257052933|ref|YP_003130766.1|	-	0.15	12.2	2.4	0.29	11.2	0.0	2.6	2	2	1	3	3	3	0	Polysaccharide	lyase	family	4,	domain	II
EF-hand_6	PF13405.1	gi|257052933|ref|YP_003130766.1|	-	0.29	11.1	4.0	3.4	7.8	0.0	2.9	2	0	0	2	2	2	0	EF-hand	domain
Dockerin_1	PF00404.13	gi|257052933|ref|YP_003130766.1|	-	0.42	10.3	6.4	4.3	7.2	0.7	3.5	3	0	0	3	3	3	0	Dockerin	type	I	repeat
YtkA	PF13115.1	gi|257052933|ref|YP_003130766.1|	-	2.7	8.4	6.5	6	7.3	0.2	3.7	3	1	1	4	4	4	0	YtkA-like
EF-hand_5	PF13202.1	gi|257052933|ref|YP_003130766.1|	-	4.4	6.8	10.9	1	8.8	0.1	3.3	3	0	0	3	3	3	0	EF	hand
HTH_IclR	PF09339.5	gi|257052935|ref|YP_003130768.1|	-	4.4e-06	26.1	0.0	7.5e-06	25.4	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.2	gi|257052935|ref|YP_003130768.1|	-	2.8e-05	23.7	0.0	6e-05	22.6	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.1	gi|257052935|ref|YP_003130768.1|	-	0.0035	16.7	0.0	0.0067	15.7	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.14	gi|257052935|ref|YP_003130768.1|	-	0.21	11.3	0.0	0.4	10.4	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Glycos_transf_2	PF00535.21	gi|257052936|ref|YP_003130769.1|	-	3.1e-21	75.7	0.0	4e-21	75.4	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|257052936|ref|YP_003130769.1|	-	6.5e-07	29.3	0.2	8.2e-07	29.0	0.2	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
DUF3099	PF11298.3	gi|257052937|ref|YP_003130770.1|	-	0.72	9.6	3.7	24	4.7	0.6	3.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3099)
HATPase_c	PF02518.21	gi|257052938|ref|YP_003130771.1|	-	6.1e-29	99.9	0.0	4e-28	97.3	0.0	2.0	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_3	PF08447.6	gi|257052938|ref|YP_003130771.1|	-	7.5e-17	61.2	0.2	7.4e-15	54.8	0.0	2.8	3	0	0	3	3	3	1	PAS	fold
HisKA	PF00512.20	gi|257052938|ref|YP_003130771.1|	-	1.2e-10	41.2	0.0	2.6e-10	40.1	0.0	1.6	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_9	PF13426.1	gi|257052938|ref|YP_003130771.1|	-	9e-10	38.8	0.0	2e-09	37.7	0.0	1.6	1	0	0	1	1	1	1	PAS	domain
PAS_4	PF08448.5	gi|257052938|ref|YP_003130771.1|	-	1.1e-08	35.1	0.0	2.7e-08	33.8	0.0	1.7	1	0	0	1	1	1	1	PAS	fold
HATPase_c_2	PF13581.1	gi|257052938|ref|YP_003130771.1|	-	5.3e-06	26.2	0.2	1.6e-05	24.6	0.1	1.8	1	1	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
PAS	PF00989.19	gi|257052938|ref|YP_003130771.1|	-	3.5e-05	23.5	0.0	0.00099	18.8	0.0	2.5	2	0	0	2	2	2	1	PAS	fold
HATPase_c_3	PF13589.1	gi|257052938|ref|YP_003130771.1|	-	3.7e-05	23.3	0.0	7e-05	22.4	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_5	PF14501.1	gi|257052938|ref|YP_003130771.1|	-	4.2e-05	23.1	0.0	7.6e-05	22.3	0.0	1.4	1	0	0	1	1	1	1	GHKL	domain
PAS_10	PF13596.1	gi|257052938|ref|YP_003130771.1|	-	0.0074	16.5	0.0	0.024	14.9	0.0	1.9	2	0	0	2	2	2	1	PAS	domain
bZIP_1	PF00170.16	gi|257052938|ref|YP_003130771.1|	-	0.02	14.8	0.6	0.044	13.7	0.4	1.5	1	0	0	1	1	1	0	bZIP	transcription	factor
PAS_8	PF13188.1	gi|257052938|ref|YP_003130771.1|	-	0.048	13.5	0.0	0.16	11.8	0.0	1.9	1	0	0	1	1	1	0	PAS	domain
Response_reg	PF00072.19	gi|257052939|ref|YP_003130772.1|	-	2.3e-20	72.6	0.0	2.7e-20	72.4	0.0	1.1	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HATPase_c	PF02518.21	gi|257052940|ref|YP_003130773.1|	-	2.8e-18	65.6	0.1	5.1e-18	64.8	0.1	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Response_reg	PF00072.19	gi|257052940|ref|YP_003130773.1|	-	1.5e-15	57.1	0.8	4.1e-15	55.7	0.1	2.1	2	0	0	2	2	2	1	Response	regulator	receiver	domain
HisKA	PF00512.20	gi|257052940|ref|YP_003130773.1|	-	1e-11	44.6	2.7	1e-11	44.6	1.9	3.1	3	1	0	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_3	PF13589.1	gi|257052940|ref|YP_003130773.1|	-	7.8e-05	22.3	0.0	0.00016	21.3	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
GMC_oxred_C	PF05199.8	gi|257052941|ref|YP_003130774.1|	-	9.4e-24	84.3	0.4	6.3e-23	81.6	0.3	2.2	1	1	0	1	1	1	1	GMC	oxidoreductase
GMC_oxred_N	PF00732.14	gi|257052941|ref|YP_003130774.1|	-	4e-16	59.0	0.0	7.3e-16	58.1	0.0	1.4	1	0	0	1	1	1	1	GMC	oxidoreductase
DAO	PF01266.19	gi|257052941|ref|YP_003130774.1|	-	5.2e-12	45.3	2.0	5e-06	25.6	0.0	2.9	2	1	0	3	3	3	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.19	gi|257052941|ref|YP_003130774.1|	-	9.9e-10	37.8	1.2	0.00095	18.1	0.1	2.4	2	0	0	2	2	2	2	FAD	binding	domain
NAD_binding_8	PF13450.1	gi|257052941|ref|YP_003130774.1|	-	4.1e-06	26.7	0.4	1.1e-05	25.3	0.3	1.8	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_2	PF07992.9	gi|257052941|ref|YP_003130774.1|	-	2.4e-05	24.3	0.0	0.00066	19.6	0.0	2.4	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.9	gi|257052941|ref|YP_003130774.1|	-	2.5e-05	22.9	0.4	0.00024	19.6	0.1	2.0	2	0	0	2	2	2	1	HI0933-like	protein
FAD_binding_3	PF01494.14	gi|257052941|ref|YP_003130774.1|	-	2.5e-05	23.5	1.5	0.00057	19.0	0.1	2.1	2	0	0	2	2	2	1	FAD	binding	domain
Lycopene_cycl	PF05834.7	gi|257052941|ref|YP_003130774.1|	-	0.0001	21.3	0.1	0.00015	20.7	0.1	1.2	1	0	0	1	1	1	1	Lycopene	cyclase	protein
ApbA	PF02558.11	gi|257052941|ref|YP_003130774.1|	-	0.001	18.5	0.0	0.002	17.5	0.0	1.5	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
NAD_binding_10	PF13460.1	gi|257052941|ref|YP_003130774.1|	-	0.0026	17.7	0.2	0.21	11.5	0.0	2.3	2	0	0	2	2	2	1	NADH(P)-binding
Pyr_redox	PF00070.22	gi|257052941|ref|YP_003130774.1|	-	0.0054	17.1	0.0	0.031	14.6	0.0	2.2	3	0	0	3	3	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.13	gi|257052941|ref|YP_003130774.1|	-	0.0096	15.5	0.0	0.022	14.4	0.0	1.6	2	0	0	2	2	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Fer4_7	PF12838.2	gi|257052941|ref|YP_003130774.1|	-	0.018	15.4	0.6	0.044	14.1	0.4	1.6	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|257052941|ref|YP_003130774.1|	-	0.038	14.0	0.1	0.074	13.0	0.1	1.4	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
TrkA_N	PF02254.13	gi|257052941|ref|YP_003130774.1|	-	0.072	13.1	0.0	0.2	11.6	0.0	1.8	2	0	0	2	2	2	0	TrkA-N	domain
Thi4	PF01946.12	gi|257052941|ref|YP_003130774.1|	-	0.093	11.8	0.1	0.18	10.8	0.0	1.4	1	0	0	1	1	1	0	Thi4	family
F420_oxidored	PF03807.12	gi|257052941|ref|YP_003130774.1|	-	0.094	13.1	0.0	0.2	12.1	0.0	1.5	1	0	0	1	1	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
Fer4_17	PF13534.1	gi|257052941|ref|YP_003130774.1|	-	0.12	12.7	0.0	0.26	11.6	0.0	1.5	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|257052941|ref|YP_003130774.1|	-	0.16	12.4	0.2	0.42	11.0	0.1	1.7	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_3	PF12798.2	gi|257052941|ref|YP_003130774.1|	-	1.2	9.8	3.5	2.8	8.7	2.4	1.6	1	0	0	1	1	1	0	4Fe-4S	binding	domain
Gluconate_2-dh3	PF13618.1	gi|257052942|ref|YP_003130775.1|	-	5.5e-16	58.9	0.2	9.9e-16	58.0	0.0	1.5	2	0	0	2	2	2	1	Gluconate	2-dehydrogenase	subunit	3
PMT_2	PF13231.1	gi|257052943|ref|YP_003130776.1|	-	5.9e-14	52.2	9.2	5.9e-14	52.2	6.4	3.3	3	0	0	3	3	3	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
PMT	PF02366.13	gi|257052943|ref|YP_003130776.1|	-	7e-06	25.5	5.8	1.3e-05	24.6	4.0	1.5	1	0	0	1	1	1	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
ABC_tran	PF00005.22	gi|257052944|ref|YP_003130777.1|	-	1.9e-33	115.6	0.0	2.9e-33	115.0	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
TOBE_2	PF08402.5	gi|257052944|ref|YP_003130777.1|	-	3.2e-10	39.8	1.0	9.8e-10	38.2	0.1	2.4	2	0	0	2	2	2	1	TOBE	domain
AAA_21	PF13304.1	gi|257052944|ref|YP_003130777.1|	-	1.4e-08	35.1	0.0	4.8e-05	23.4	0.0	2.2	1	1	1	2	2	2	2	AAA	domain
AAA_16	PF13191.1	gi|257052944|ref|YP_003130777.1|	-	6.3e-06	26.2	0.2	1.3e-05	25.3	0.1	1.6	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|257052944|ref|YP_003130777.1|	-	0.00026	21.1	0.1	0.0009	19.3	0.1	1.8	1	1	0	1	1	1	1	AAA	domain
Rad17	PF03215.10	gi|257052944|ref|YP_003130777.1|	-	0.0023	16.6	0.0	0.0037	16.0	0.0	1.2	1	0	0	1	1	1	1	Rad17	cell	cycle	checkpoint	protein
AAA	PF00004.24	gi|257052944|ref|YP_003130777.1|	-	0.0043	17.2	0.1	0.027	14.6	0.0	2.1	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_33	PF13671.1	gi|257052944|ref|YP_003130777.1|	-	0.015	15.2	0.4	0.071	12.9	0.3	2.0	1	1	0	1	1	1	0	AAA	domain
DUF258	PF03193.11	gi|257052944|ref|YP_003130777.1|	-	0.022	13.9	0.0	0.04	13.1	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA_15	PF13175.1	gi|257052944|ref|YP_003130777.1|	-	0.043	12.8	0.0	0.1	11.6	0.0	1.5	2	0	0	2	2	2	0	AAA	ATPase	domain
SbcCD_C	PF13558.1	gi|257052944|ref|YP_003130777.1|	-	0.065	13.1	0.1	0.29	11.0	0.1	2.0	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_18	PF13238.1	gi|257052944|ref|YP_003130777.1|	-	0.066	13.5	0.0	0.2	11.9	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
AAA_25	PF13481.1	gi|257052944|ref|YP_003130777.1|	-	0.078	12.3	0.1	0.69	9.2	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_28	PF13521.1	gi|257052944|ref|YP_003130777.1|	-	0.089	12.7	1.1	0.17	11.8	0.3	1.8	2	0	0	2	2	2	0	AAA	domain
AAA_17	PF13207.1	gi|257052944|ref|YP_003130777.1|	-	0.14	13.0	1.4	0.32	11.8	1.0	1.9	1	1	0	1	1	1	0	AAA	domain
BPD_transp_1	PF00528.17	gi|257052945|ref|YP_003130778.1|	-	1.3e-28	99.7	35.5	1.7e-15	57.0	9.4	3.5	3	1	1	4	4	4	2	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_6	PF13343.1	gi|257052946|ref|YP_003130779.1|	-	4.4e-16	58.9	0.0	6e-16	58.4	0.0	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_8	PF13416.1	gi|257052946|ref|YP_003130779.1|	-	8.5e-10	38.8	2.4	1.2e-09	38.3	1.6	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.1	gi|257052946|ref|YP_003130779.1|	-	9.8e-08	31.8	2.8	2.8e-07	30.4	2.0	1.7	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.20	gi|257052946|ref|YP_003130779.1|	-	8.8e-07	28.9	2.3	1.4e-06	28.3	1.6	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.4	gi|257052946|ref|YP_003130779.1|	-	3.4	7.9	8.3	15	5.9	5.7	2.1	1	1	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
RGP	PF03214.8	gi|257052947|ref|YP_003130780.1|	-	7.5e-13	47.9	0.0	8.9e-13	47.7	0.0	1.3	1	0	0	1	1	1	1	Reversibly	glycosylated	polypeptide
Glyco_tranf_2_3	PF13641.1	gi|257052947|ref|YP_003130780.1|	-	0.00046	20.0	3.1	0.022	14.5	2.1	2.9	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
DUF502	PF04367.8	gi|257052948|ref|YP_003130781.1|	-	7.5e-28	96.4	0.2	7.5e-28	96.4	0.2	1.8	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF502)
DUF4401	PF14351.1	gi|257052949|ref|YP_003130782.1|	-	2.7	6.8	24.3	0.045	12.7	7.4	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4401)
DUF58	PF01882.13	gi|257052950|ref|YP_003130783.1|	-	8.7e-15	54.6	0.3	5.5e-14	52.0	0.0	2.6	3	0	0	3	3	3	1	Protein	of	unknown	function	DUF58
DUF11	PF01345.13	gi|257052950|ref|YP_003130783.1|	-	7.2e-09	35.5	5.9	7.5e-09	35.5	1.1	2.6	2	0	0	2	2	2	1	Domain	of	unknown	function	DUF11
NPCBM_assoc	PF10633.4	gi|257052950|ref|YP_003130783.1|	-	4.9e-06	26.5	1.4	9.8e-06	25.5	0.4	1.9	2	0	0	2	2	2	1	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
DUF533	PF04391.7	gi|257052950|ref|YP_003130783.1|	-	0.016	14.5	0.0	0.031	13.6	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF533)
CARDB	PF07705.6	gi|257052950|ref|YP_003130783.1|	-	0.13	12.3	0.0	0.29	11.1	0.0	1.5	1	0	0	1	1	1	0	CARDB
DUF4129	PF13559.1	gi|257052951|ref|YP_003130784.1|	-	3.5e-11	42.9	3.3	1.8e-10	40.6	2.3	2.3	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4129)
MARVEL	PF01284.18	gi|257052951|ref|YP_003130784.1|	-	0.049	13.4	4.4	0.13	12.0	3.1	1.7	1	1	0	1	1	1	0	Membrane-associating	domain
UPF0104	PF03706.8	gi|257052951|ref|YP_003130784.1|	-	0.075	12.3	9.5	0.043	13.0	1.6	2.8	3	0	0	3	3	3	0	Uncharacterised	protein	family	(UPF0104)
DsbB	PF02600.11	gi|257052951|ref|YP_003130784.1|	-	1.3	8.7	5.9	0.4	10.4	0.9	2.2	2	1	0	2	2	2	0	Disulfide	bond	formation	protein	DsbB
DUF202	PF02656.10	gi|257052951|ref|YP_003130784.1|	-	1.6	8.9	11.6	2.6	8.3	1.4	3.3	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF202)
AAA_3	PF07726.6	gi|257052952|ref|YP_003130785.1|	-	2.1e-63	211.7	0.1	3.3e-63	211.1	0.0	1.3	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_5	PF07728.9	gi|257052952|ref|YP_003130785.1|	-	1.5e-13	50.7	0.0	5.9e-13	48.7	0.0	1.9	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
MCM	PF00493.18	gi|257052952|ref|YP_003130785.1|	-	3.4e-06	26.1	0.0	7.6e-05	21.6	0.0	2.1	2	0	0	2	2	2	1	MCM2/3/5	family
AAA	PF00004.24	gi|257052952|ref|YP_003130785.1|	-	4e-05	23.8	0.0	6.7e-05	23.0	0.0	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Mg_chelatase	PF01078.16	gi|257052952|ref|YP_003130785.1|	-	7.4e-05	21.9	0.1	0.19	10.8	0.0	2.6	2	1	1	3	3	3	2	Magnesium	chelatase,	subunit	ChlI
Sigma54_activat	PF00158.21	gi|257052952|ref|YP_003130785.1|	-	0.00011	21.7	0.0	0.00089	18.7	0.0	2.1	1	1	0	1	1	1	1	Sigma-54	interaction	domain
AAA_16	PF13191.1	gi|257052956|ref|YP_003130789.1|	-	4.6e-12	46.3	4.9	1.2e-11	44.9	0.2	2.8	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|257052956|ref|YP_003130789.1|	-	1.2e-10	41.6	0.0	9.6e-10	38.7	0.0	2.2	1	1	0	2	2	2	1	AAA	domain
AAA	PF00004.24	gi|257052956|ref|YP_003130789.1|	-	3.8e-06	27.1	0.0	2.3e-05	24.5	0.0	2.4	2	1	0	2	2	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_17	PF13207.1	gi|257052956|ref|YP_003130789.1|	-	9.1e-06	26.4	4.0	5.4e-05	24.0	0.1	2.5	1	1	1	2	2	2	1	AAA	domain
AAA_18	PF13238.1	gi|257052956|ref|YP_003130789.1|	-	0.00078	19.7	1.2	0.0065	16.7	0.8	2.5	1	1	0	1	1	1	1	AAA	domain
NTPase_1	PF03266.10	gi|257052956|ref|YP_003130789.1|	-	0.00087	19.0	0.1	0.0059	16.3	0.0	2.3	3	0	0	3	3	2	1	NTPase
ABC_tran	PF00005.22	gi|257052956|ref|YP_003130789.1|	-	0.0009	19.5	0.0	0.003	17.8	0.0	1.8	2	1	0	2	2	1	1	ABC	transporter
Zeta_toxin	PF06414.7	gi|257052956|ref|YP_003130789.1|	-	0.0017	17.4	0.1	0.0062	15.6	0.0	2.0	2	0	0	2	2	2	1	Zeta	toxin
AAA_19	PF13245.1	gi|257052956|ref|YP_003130789.1|	-	0.0018	17.9	0.1	0.009	15.7	0.0	2.3	2	0	0	2	2	1	1	Part	of	AAA	domain
DUF815	PF05673.8	gi|257052956|ref|YP_003130789.1|	-	0.003	16.5	0.0	0.0049	15.8	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
RuvB_N	PF05496.7	gi|257052956|ref|YP_003130789.1|	-	0.0053	15.8	0.1	0.056	12.4	0.0	2.1	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_29	PF13555.1	gi|257052956|ref|YP_003130789.1|	-	0.0068	15.9	0.6	0.019	14.4	0.2	1.9	1	1	1	2	2	2	1	P-loop	containing	region	of	AAA	domain
Bac_DnaA	PF00308.13	gi|257052956|ref|YP_003130789.1|	-	0.0081	15.8	0.0	0.018	14.7	0.0	1.6	2	0	0	2	2	1	1	Bacterial	dnaA	protein
NB-ARC	PF00931.17	gi|257052956|ref|YP_003130789.1|	-	0.0085	14.9	0.0	0.013	14.3	0.0	1.3	1	0	0	1	1	1	1	NB-ARC	domain
AAA_33	PF13671.1	gi|257052956|ref|YP_003130789.1|	-	0.012	15.4	2.2	0.061	13.2	0.3	2.9	2	1	0	2	2	2	0	AAA	domain
APS_kinase	PF01583.15	gi|257052956|ref|YP_003130789.1|	-	0.027	14.1	0.0	0.05	13.2	0.0	1.4	1	0	0	1	1	1	0	Adenylylsulphate	kinase
AAA_23	PF13476.1	gi|257052956|ref|YP_003130789.1|	-	0.043	14.1	0.0	0.084	13.1	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
PRK	PF00485.13	gi|257052956|ref|YP_003130789.1|	-	0.044	13.3	0.0	0.085	12.4	0.0	1.4	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
AAA_14	PF13173.1	gi|257052956|ref|YP_003130789.1|	-	0.049	13.5	0.0	0.11	12.3	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
Arch_ATPase	PF01637.13	gi|257052956|ref|YP_003130789.1|	-	0.05	13.3	0.0	0.21	11.2	0.0	2.0	1	1	0	1	1	1	0	Archaeal	ATPase
Sigma54_activat	PF00158.21	gi|257052956|ref|YP_003130789.1|	-	0.066	12.6	0.0	0.13	11.6	0.0	1.5	1	0	0	1	1	1	0	Sigma-54	interaction	domain
AAA_10	PF12846.2	gi|257052956|ref|YP_003130789.1|	-	0.073	12.5	0.2	0.18	11.2	0.0	1.7	2	1	0	2	2	2	0	AAA-like	domain
UPF0079	PF02367.12	gi|257052956|ref|YP_003130789.1|	-	0.079	12.5	0.2	1.1	8.9	0.0	2.6	3	0	0	3	3	3	0	Uncharacterised	P-loop	hydrolase	UPF0079
G-alpha	PF00503.15	gi|257052956|ref|YP_003130789.1|	-	0.08	11.6	0.0	0.085	11.5	0.0	1.2	1	0	0	1	1	1	0	G-protein	alpha	subunit
AAA_5	PF07728.9	gi|257052956|ref|YP_003130789.1|	-	0.094	12.4	0.1	0.54	9.9	0.1	2.4	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
Penicillinase_R	PF03965.11	gi|257052956|ref|YP_003130789.1|	-	0.11	12.6	0.0	0.2	11.7	0.0	1.5	1	0	0	1	1	1	0	Penicillinase	repressor
Mg_chelatase	PF01078.16	gi|257052956|ref|YP_003130789.1|	-	0.12	11.5	0.0	0.25	10.4	0.0	1.5	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
Cdc6_C	PF09079.6	gi|257052956|ref|YP_003130789.1|	-	0.12	12.1	0.0	0.3	10.8	0.0	1.7	1	0	0	1	1	1	0	CDC6,	C	terminal
DUF258	PF03193.11	gi|257052956|ref|YP_003130789.1|	-	0.16	11.1	0.0	0.26	10.4	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
tRNA_lig_kinase	PF08303.6	gi|257052956|ref|YP_003130789.1|	-	0.19	11.6	0.2	0.48	10.2	0.0	1.7	2	0	0	2	2	1	0	tRNA	ligase	kinase	domain
AAA_25	PF13481.1	gi|257052956|ref|YP_003130789.1|	-	0.22	10.9	3.2	0.15	11.4	0.2	2.3	2	2	1	3	3	3	0	AAA	domain
Rad51	PF08423.6	gi|257052958|ref|YP_003130791.1|	-	0.0028	16.5	0.0	0.0054	15.6	0.0	1.4	1	1	0	1	1	1	1	Rad51
HSBP1	PF06825.7	gi|257052959|ref|YP_003130792.1|	-	0.00039	19.9	1.5	0.075	12.6	0.7	2.4	1	1	1	2	2	2	2	Heat	shock	factor	binding	protein	1
Dynamitin	PF04912.9	gi|257052959|ref|YP_003130792.1|	-	0.00076	18.3	0.1	0.001	17.9	0.1	1.1	1	0	0	1	1	1	1	Dynamitin
SlyX	PF04102.7	gi|257052959|ref|YP_003130792.1|	-	0.0068	16.7	0.1	0.027	14.8	0.1	1.9	1	1	0	1	1	1	1	SlyX
PilJ	PF13675.1	gi|257052959|ref|YP_003130792.1|	-	0.039	14.2	0.8	3.2	8.1	0.0	2.4	1	1	1	2	2	2	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
TMF_DNA_bd	PF12329.3	gi|257052959|ref|YP_003130792.1|	-	0.04	13.7	0.0	0.057	13.2	0.0	1.2	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	DNA	binding
DivIC	PF04977.10	gi|257052959|ref|YP_003130792.1|	-	0.043	13.3	0.3	0.063	12.7	0.2	1.3	1	0	0	1	1	1	0	Septum	formation	initiator
Cortex-I_coil	PF09304.5	gi|257052959|ref|YP_003130792.1|	-	0.064	13.2	0.2	0.12	12.4	0.2	1.4	1	0	0	1	1	1	0	Cortexillin	I,	coiled	coil
DUF4140	PF13600.1	gi|257052959|ref|YP_003130792.1|	-	0.065	13.6	0.4	0.11	12.8	0.2	1.3	1	0	0	1	1	1	0	N-terminal	domain	of	unknown	function	(DUF4140)
HrpB7	PF09486.5	gi|257052959|ref|YP_003130792.1|	-	0.079	12.8	1.0	0.15	11.9	0.2	1.6	1	1	0	1	1	1	0	Bacterial	type	III	secretion	protein	(HrpB7)
TMF_TATA_bd	PF12325.3	gi|257052959|ref|YP_003130792.1|	-	0.19	11.4	0.8	0.28	10.8	0.5	1.2	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	TATA	binding
DNA_pol_B	PF00136.16	gi|257052960|ref|YP_003130793.1|	-	6.8e-27	94.3	0.0	1.4e-26	93.3	0.0	1.3	1	1	0	1	1	1	1	DNA	polymerase	family	B
PAS_3	PF08447.6	gi|257052961|ref|YP_003130794.1|	-	2.5e-55	184.5	3.6	2.1e-17	62.9	0.0	4.6	5	0	0	5	5	4	4	PAS	fold
PAS_9	PF13426.1	gi|257052961|ref|YP_003130794.1|	-	1.1e-43	147.7	3.6	1.3e-12	47.9	0.0	4.3	4	0	0	4	4	4	4	PAS	domain
PAS_4	PF08448.5	gi|257052961|ref|YP_003130794.1|	-	1e-31	109.2	12.7	1.1e-11	44.7	0.0	4.6	5	0	0	5	5	5	4	PAS	fold
PAS	PF00989.19	gi|257052961|ref|YP_003130794.1|	-	4.5e-28	97.2	0.3	1.7e-12	47.1	0.0	3.9	4	0	0	4	4	4	2	PAS	fold
Response_reg	PF00072.19	gi|257052961|ref|YP_003130794.1|	-	9.9e-22	77.0	0.1	2.6e-21	75.7	0.0	1.8	1	0	0	1	1	1	1	Response	regulator	receiver	domain
PAS_8	PF13188.1	gi|257052961|ref|YP_003130794.1|	-	2.5e-09	36.6	0.0	0.0013	18.4	0.0	3.6	4	0	0	4	4	4	2	PAS	domain
PAS_11	PF14598.1	gi|257052961|ref|YP_003130794.1|	-	2.2e-06	27.5	0.0	0.1	12.5	0.0	3.5	3	0	0	3	3	3	2	PAS	domain
OKR_DC_1_N	PF03709.10	gi|257052961|ref|YP_003130794.1|	-	1.8e-05	24.7	0.1	4.9e-05	23.3	0.0	1.8	1	0	0	1	1	1	1	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
HAS-barrel	PF09378.5	gi|257052961|ref|YP_003130794.1|	-	0.0038	17.1	0.2	0.11	12.3	0.0	2.7	2	0	0	2	2	2	1	HAS	barrel	domain
MEKHLA	PF08670.6	gi|257052961|ref|YP_003130794.1|	-	0.16	11.5	0.0	0.42	10.1	0.0	1.7	2	0	0	2	2	2	0	MEKHLA	domain
PAS_7	PF12860.2	gi|257052961|ref|YP_003130794.1|	-	0.73	9.8	11.4	15	5.5	0.0	5.4	5	2	0	5	5	5	0	PAS	fold
Beta-Casp	PF10996.3	gi|257052962|ref|YP_003130795.1|	-	2.3e-20	72.7	0.0	4.5e-20	71.8	0.0	1.4	1	0	0	1	1	1	1	Beta-Casp	domain
Lactamase_B	PF00753.22	gi|257052962|ref|YP_003130795.1|	-	2.4e-17	63.2	3.1	3.8e-17	62.5	2.2	1.3	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
RMMBL	PF07521.7	gi|257052962|ref|YP_003130795.1|	-	4.2e-11	42.4	0.0	8.8e-11	41.4	0.0	1.6	1	0	0	1	1	1	1	RNA-metabolising	metallo-beta-lactamase
Lactamase_B_2	PF12706.2	gi|257052962|ref|YP_003130795.1|	-	6.2e-10	38.9	0.2	1.2e-09	37.9	0.1	1.5	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Rhodanese	PF00581.15	gi|257052962|ref|YP_003130795.1|	-	0.13	12.6	0.0	0.34	11.2	0.0	1.7	1	0	0	1	1	1	0	Rhodanese-like	domain
G_glu_transpept	PF01019.16	gi|257052963|ref|YP_003130796.1|	-	9.7e-146	486.2	0.3	1.1e-145	486.0	0.2	1.0	1	0	0	1	1	1	1	Gamma-glutamyltranspeptidase
MFS_1	PF07690.11	gi|257052964|ref|YP_003130797.1|	-	6.1e-34	117.2	61.6	1.5e-28	99.5	25.8	2.2	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Nodulin-like	PF06813.8	gi|257052964|ref|YP_003130797.1|	-	8.2e-05	21.9	8.1	0.00014	21.1	5.6	1.5	1	0	0	1	1	1	1	Nodulin-like
MFS_2	PF13347.1	gi|257052964|ref|YP_003130797.1|	-	0.00063	18.2	12.3	0.00063	18.2	8.5	2.3	1	1	1	2	2	2	2	MFS/sugar	transport	protein
DUF3925	PF13063.1	gi|257052964|ref|YP_003130797.1|	-	0.2	11.6	4.7	3.8	7.6	0.1	2.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3925)
TFIIB	PF00382.14	gi|257052965|ref|YP_003130798.1|	-	1.5e-33	114.4	0.0	1.1e-18	66.8	0.0	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.7	gi|257052965|ref|YP_003130798.1|	-	3.9e-15	54.8	3.3	7e-15	54.0	2.3	1.5	1	0	0	1	1	1	1	TFIIB	zinc-binding
zf-ribbon_3	PF13248.1	gi|257052965|ref|YP_003130798.1|	-	0.0027	16.8	1.5	0.005	15.9	1.0	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
Sigma70_r4	PF04545.11	gi|257052965|ref|YP_003130798.1|	-	0.0076	15.5	0.1	0.13	11.6	0.0	2.6	2	0	0	2	2	2	1	Sigma-70,	region	4
OrfB_Zn_ribbon	PF07282.6	gi|257052965|ref|YP_003130798.1|	-	0.013	15.1	0.8	0.026	14.1	0.5	1.5	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
DZR	PF12773.2	gi|257052965|ref|YP_003130798.1|	-	0.027	14.2	0.4	0.053	13.3	0.3	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-TFIIB	PF13453.1	gi|257052965|ref|YP_003130798.1|	-	0.1	11.8	0.2	0.1	11.8	0.1	2.0	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
HTH_11	PF08279.7	gi|257052965|ref|YP_003130798.1|	-	0.11	12.1	0.5	0.29	10.8	0.1	1.8	2	0	0	2	2	2	0	HTH	domain
UMPH-1	PF05822.7	gi|257052965|ref|YP_003130798.1|	-	0.13	11.5	0.0	0.2	10.9	0.0	1.2	1	0	0	1	1	1	0	Pyrimidine	5'-nucleotidase	(UMPH-1)
RRN7	PF11781.3	gi|257052965|ref|YP_003130798.1|	-	0.5	9.9	4.5	0.95	9.0	3.2	1.4	1	0	0	1	1	1	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
Nudix_N_2	PF14803.1	gi|257052965|ref|YP_003130798.1|	-	0.51	10.0	4.1	2.7	7.7	2.9	2.2	1	1	0	1	1	1	0	Nudix	N-terminal
zf-NADH-PPase	PF09297.6	gi|257052965|ref|YP_003130798.1|	-	0.56	9.7	3.7	1.3	8.5	2.6	1.7	1	0	0	1	1	1	0	NADH	pyrophosphatase	zinc	ribbon	domain
Prim_Zn_Ribbon	PF08273.7	gi|257052965|ref|YP_003130798.1|	-	1.9	8.6	6.8	7.6	6.6	4.7	2.1	1	1	0	1	1	1	0	Zinc-binding	domain	of	primase-helicase
TrmB	PF01978.14	gi|257052966|ref|YP_003130799.1|	-	1.9e-17	62.7	0.0	3.6e-17	61.8	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Regulator_TrmB	PF11495.3	gi|257052966|ref|YP_003130799.1|	-	0.00031	19.8	0.0	0.00052	19.0	0.0	1.4	1	0	0	1	1	1	1	Archaeal	transcriptional	regulator	TrmB
Rrf2	PF02082.15	gi|257052966|ref|YP_003130799.1|	-	0.043	13.9	0.0	0.077	13.1	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_IclR	PF09339.5	gi|257052966|ref|YP_003130799.1|	-	0.051	13.1	0.0	0.14	11.8	0.0	1.7	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
Imm16	PF15565.1	gi|257052966|ref|YP_003130799.1|	-	0.16	11.8	0.5	5.2	6.9	0.0	2.6	2	1	1	3	3	3	0	Immunity	protein	16
Fer2	PF00111.22	gi|257052967|ref|YP_003130800.1|	-	7.3e-13	48.0	0.5	1.2e-12	47.4	0.3	1.4	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
DUF177	PF02620.12	gi|257052967|ref|YP_003130800.1|	-	0.085	12.9	0.2	0.085	12.9	0.1	2.0	2	0	0	2	2	2	0	Uncharacterized	ACR,	COG1399
HycI	PF01750.13	gi|257052967|ref|YP_003130800.1|	-	0.094	12.2	0.0	0.18	11.3	0.0	1.4	1	0	0	1	1	1	0	Hydrogenase	maturation	protease
Imm10	PF15562.1	gi|257052968|ref|YP_003130801.1|	-	1.9	8.3	7.1	1.6	8.5	0.2	2.9	3	0	0	3	3	3	0	Immunity	protein	10
Fic_N	PF13784.1	gi|257052969|ref|YP_003130802.1|	-	7.4e-23	80.2	0.6	1.5e-22	79.2	0.4	1.5	1	0	0	1	1	1	1	Fic/DOC	family	N-terminal
Fic	PF02661.13	gi|257052969|ref|YP_003130802.1|	-	1.8e-20	73.4	0.0	1.1e-19	70.8	0.0	2.4	3	1	1	4	4	4	1	Fic/DOC	family
HTH_24	PF13412.1	gi|257052969|ref|YP_003130802.1|	-	0.0019	17.5	0.0	0.0035	16.7	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.2	gi|257052969|ref|YP_003130802.1|	-	0.046	13.3	0.1	0.17	11.5	0.0	2.1	2	0	0	2	2	2	0	MarR	family
DUF4268	PF14088.1	gi|257052973|ref|YP_003130806.1|	-	3.2e-09	36.5	0.0	4.9e-09	35.9	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4268)
DUF4263	PF14082.1	gi|257052973|ref|YP_003130806.1|	-	6.7e-05	22.8	0.0	0.00051	20.0	0.0	2.4	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4263)
DUF91	PF01939.11	gi|257052973|ref|YP_003130806.1|	-	0.011	14.8	0.0	0.02	14.0	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF91
HTH_20	PF12840.2	gi|257052974|ref|YP_003130807.1|	-	1.9e-08	33.9	0.2	7.1e-08	32.1	0.0	1.8	1	1	1	2	2	2	1	Helix-turn-helix	domain
HTH_28	PF13518.1	gi|257052974|ref|YP_003130807.1|	-	0.00019	21.3	0.0	0.00039	20.3	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_29	PF13551.1	gi|257052974|ref|YP_003130807.1|	-	0.0002	21.4	0.0	0.00059	19.9	0.0	1.7	2	0	0	2	2	2	1	Winged	helix-turn	helix
MarR_2	PF12802.2	gi|257052974|ref|YP_003130807.1|	-	0.0002	20.9	0.0	0.00044	19.8	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_15	PF12324.3	gi|257052974|ref|YP_003130807.1|	-	0.00032	20.2	0.6	0.0014	18.2	0.0	2.0	1	1	1	2	2	2	1	Helix-turn-helix	domain	of	alkylmercury	lyase
HTH_24	PF13412.1	gi|257052974|ref|YP_003130807.1|	-	0.0019	17.5	0.8	0.0033	16.7	0.0	1.7	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.14	gi|257052974|ref|YP_003130807.1|	-	0.0026	17.4	0.0	0.0041	16.7	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Sigma70_r1_1	PF03979.9	gi|257052974|ref|YP_003130807.1|	-	0.011	15.6	0.1	0.29	11.0	0.0	2.2	1	1	1	2	2	2	0	Sigma-70	factor,	region	1.1
HTH_IclR	PF09339.5	gi|257052974|ref|YP_003130807.1|	-	0.03	13.9	0.0	0.056	13.0	0.0	1.5	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
Bac_DNA_binding	PF00216.16	gi|257052974|ref|YP_003130807.1|	-	0.032	14.2	0.2	0.096	12.7	0.0	1.7	2	0	0	2	2	2	0	Bacterial	DNA-binding	protein
HTH_27	PF13463.1	gi|257052974|ref|YP_003130807.1|	-	0.033	14.5	0.0	0.056	13.7	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF2250	PF10007.4	gi|257052974|ref|YP_003130807.1|	-	0.053	13.4	0.0	0.087	12.7	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_23	PF13384.1	gi|257052974|ref|YP_003130807.1|	-	0.079	12.6	0.0	0.67	9.6	0.0	2.1	2	0	0	2	2	2	0	Homeodomain-like	domain
HTH_1	PF00126.22	gi|257052974|ref|YP_003130807.1|	-	0.092	12.5	0.0	0.17	11.6	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
MarR	PF01047.17	gi|257052974|ref|YP_003130807.1|	-	0.13	12.0	0.0	0.2	11.3	0.0	1.3	1	0	0	1	1	1	0	MarR	family
TBPIP	PF07106.8	gi|257052975|ref|YP_003130808.1|	-	0.00052	19.6	0.0	0.00072	19.1	0.0	1.2	1	0	0	1	1	1	1	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
HTH_24	PF13412.1	gi|257052975|ref|YP_003130808.1|	-	0.0014	17.9	0.0	0.003	16.9	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.7	gi|257052975|ref|YP_003130808.1|	-	0.01	15.4	0.0	0.019	14.5	0.0	1.4	1	0	0	1	1	1	0	HTH	domain
HTH_IclR	PF09339.5	gi|257052975|ref|YP_003130808.1|	-	0.082	12.5	0.0	0.14	11.7	0.0	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HlyIII	PF03006.15	gi|257052976|ref|YP_003130809.1|	-	0.065	12.6	3.9	0.11	11.9	2.7	1.3	1	1	0	1	1	1	0	Haemolysin-III	related
ABC_tran	PF00005.22	gi|257052978|ref|YP_003130811.1|	-	0.014	15.6	0.0	0.13	12.5	0.0	2.5	2	0	0	2	2	2	0	ABC	transporter
DUF1788	PF08747.6	gi|257052979|ref|YP_003130812.1|	-	7.8e-14	51.6	0.0	1.2e-13	51.0	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1788)
EIIA-man	PF03610.11	gi|257052979|ref|YP_003130812.1|	-	0.00027	20.9	0.0	0.00041	20.3	0.0	1.3	1	0	0	1	1	1	1	PTS	system	fructose	IIA	component
Tautomerase	PF01361.16	gi|257052979|ref|YP_003130812.1|	-	0.032	13.8	0.1	0.063	12.8	0.1	1.4	1	0	0	1	1	1	0	Tautomerase	enzyme
Statherin	PF03875.8	gi|257052979|ref|YP_003130812.1|	-	0.074	12.9	0.2	0.14	12.0	0.1	1.4	1	0	0	1	1	1	0	Statherin
AFG1_ATPase	PF03969.11	gi|257052980|ref|YP_003130813.1|	-	0.0016	17.3	0.0	0.0033	16.2	0.0	1.4	1	0	0	1	1	1	1	AFG1-like	ATPase
Nup88	PF10168.4	gi|257052980|ref|YP_003130813.1|	-	0.12	10.2	0.7	0.19	9.5	0.5	1.2	1	0	0	1	1	1	0	Nuclear	pore	component
PqqD	PF05402.7	gi|257052980|ref|YP_003130813.1|	-	0.99	9.4	8.2	2.1	8.4	0.1	5.2	5	0	0	5	5	5	0	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
UPF0175	PF03683.8	gi|257052982|ref|YP_003130815.1|	-	1.5e-06	27.5	0.0	3.8e-06	26.2	0.0	1.7	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0175)
PLU-1	PF08429.6	gi|257052983|ref|YP_003130816.1|	-	0.002	17.1	0.7	0.0025	16.7	0.5	1.1	1	0	0	1	1	1	1	PLU-1-like	protein
Med28	PF11594.3	gi|257052983|ref|YP_003130816.1|	-	0.025	14.7	0.6	0.17	12.1	0.1	2.0	1	1	1	2	2	2	0	Mediator	complex	subunit	28
TipAS	PF07739.8	gi|257052983|ref|YP_003130816.1|	-	0.098	12.9	0.1	0.33	11.2	0.1	1.8	1	1	1	2	2	2	0	TipAS	antibiotic-recognition	domain
Spectrin	PF00435.16	gi|257052983|ref|YP_003130816.1|	-	0.11	12.8	4.0	1.1	9.6	2.5	2.3	1	1	0	1	1	1	0	Spectrin	repeat
HisKA_3	PF07730.8	gi|257052983|ref|YP_003130816.1|	-	0.12	12.7	2.4	0.66	10.3	0.4	2.4	1	1	1	2	2	2	0	Histidine	kinase
V-SNARE	PF05008.10	gi|257052983|ref|YP_003130816.1|	-	0.13	12.4	1.7	14	5.9	0.1	2.4	2	0	0	2	2	2	0	Vesicle	transport	v-SNARE	protein	N-terminus
PASTA	PF03793.14	gi|257052983|ref|YP_003130816.1|	-	0.13	11.9	2.3	1	9.0	0.1	2.5	1	1	1	2	2	2	0	PASTA	domain
DUF1732	PF08340.6	gi|257052983|ref|YP_003130816.1|	-	0.16	11.7	1.5	0.37	10.6	0.1	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1732)
RepB	PF07506.6	gi|257052983|ref|YP_003130816.1|	-	0.2	11.4	1.0	1.8	8.3	0.1	2.0	1	1	1	2	2	2	0	RepB	plasmid	partitioning	protein
DUF3450	PF11932.3	gi|257052983|ref|YP_003130816.1|	-	0.26	10.5	1.6	3.6	6.7	0.8	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3450)
HisKA	PF00512.20	gi|257052983|ref|YP_003130816.1|	-	0.95	9.4	4.6	1.1	9.3	1.3	2.2	1	1	1	2	2	2	0	His	Kinase	A	(phospho-acceptor)	domain
TMF_DNA_bd	PF12329.3	gi|257052983|ref|YP_003130816.1|	-	1.2	9.0	5.2	2.6	7.9	1.0	2.3	1	1	1	2	2	2	0	TATA	element	modulatory	factor	1	DNA	binding
Exonuc_VII_S	PF02609.11	gi|257052983|ref|YP_003130816.1|	-	2.4	8.0	10.3	0.28	10.9	0.6	3.4	3	1	1	4	4	4	0	Exonuclease	VII	small	subunit
AAA_15	PF13175.1	gi|257052984|ref|YP_003130817.1|	-	3.6e-20	72.3	9.8	8e-13	48.2	1.5	2.4	1	1	0	2	2	2	2	AAA	ATPase	domain
AAA_21	PF13304.1	gi|257052984|ref|YP_003130817.1|	-	1.5e-17	64.5	4.4	1.5e-17	64.5	3.1	2.5	2	1	0	2	2	2	1	AAA	domain
AAA_23	PF13476.1	gi|257052984|ref|YP_003130817.1|	-	6.9e-10	39.5	5.0	6.9e-10	39.5	3.5	2.0	2	0	0	2	2	2	1	AAA	domain
DUF2813	PF11398.3	gi|257052984|ref|YP_003130817.1|	-	5.3e-08	32.3	1.0	0.00013	21.2	0.0	2.8	3	0	0	3	3	3	2	Protein	of	unknown	function	(DUF2813)
SMC_N	PF02463.14	gi|257052984|ref|YP_003130817.1|	-	4e-05	22.9	4.0	0.0013	17.9	2.7	2.6	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.1	gi|257052984|ref|YP_003130817.1|	-	0.0003	20.2	0.0	0.00062	19.2	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
ABC_tran	PF00005.22	gi|257052984|ref|YP_003130817.1|	-	0.007	16.6	0.8	1.3	9.3	0.0	2.9	3	0	0	3	3	3	1	ABC	transporter
Methyltransf_26	PF13659.1	gi|257052985|ref|YP_003130818.1|	-	7.6e-21	74.3	0.0	2.8e-20	72.5	0.0	1.9	1	1	0	1	1	1	1	Methyltransferase	domain
N6_Mtase	PF02384.11	gi|257052985|ref|YP_003130818.1|	-	9.7e-11	41.2	0.0	5.8e-06	25.6	0.0	3.3	3	0	0	3	3	3	2	N-6	DNA	Methylase
Methyltransf_31	PF13847.1	gi|257052985|ref|YP_003130818.1|	-	4.9e-05	22.9	0.1	0.00028	20.4	0.0	2.3	2	0	0	2	2	2	1	Methyltransferase	domain
UPF0020	PF01170.13	gi|257052985|ref|YP_003130818.1|	-	0.00011	21.8	0.0	0.035	13.6	0.0	2.6	2	0	0	2	2	2	2	Putative	RNA	methylase	family	UPF0020
Phage_glycop_gL	PF11108.3	gi|257052985|ref|YP_003130818.1|	-	0.16	11.9	0.4	0.47	10.4	0.3	1.7	1	0	0	1	1	1	0	Viral	glycoprotein	L
TBP	PF00352.16	gi|257052986|ref|YP_003130819.1|	-	1.1e-38	130.5	0.0	1e-21	76.0	0.0	2.2	2	0	0	2	2	2	2	Transcription	factor	TFIID	(or	TATA-binding	protein,	TBP)
PqqD	PF05402.7	gi|257052986|ref|YP_003130819.1|	-	0.0016	18.4	0.1	0.0057	16.6	0.0	2.0	2	0	0	2	2	2	1	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
CENP-F_C_Rb_bdg	PF10490.4	gi|257052986|ref|YP_003130819.1|	-	0.0082	15.4	0.3	3.8	6.9	0.0	2.4	2	0	0	2	2	2	2	Rb-binding	domain	of	kinetochore	protein	Cenp-F/LEK1
HTH_Crp_2	PF13545.1	gi|257052986|ref|YP_003130819.1|	-	0.056	13.2	0.1	0.26	11.1	0.0	2.2	2	1	0	2	2	2	0	Crp-like	helix-turn-helix	domain
PglZ	PF08665.7	gi|257052987|ref|YP_003130820.1|	-	2.5e-09	37.0	0.0	5.4e-09	35.9	0.0	1.6	1	0	0	1	1	1	1	PglZ	domain
TGT	PF01702.13	gi|257052988|ref|YP_003130821.1|	-	0.0073	15.6	0.0	0.012	14.9	0.0	1.3	1	0	0	1	1	1	1	Queuine	tRNA-ribosyltransferase
SNF2_N	PF00176.18	gi|257052989|ref|YP_003130822.1|	-	3.1e-27	95.1	0.0	3.1e-25	88.5	0.0	2.2	1	1	0	1	1	1	1	SNF2	family	N-terminal	domain
Helicase_C	PF00271.26	gi|257052989|ref|YP_003130822.1|	-	3.5e-18	65.2	0.0	9.1e-18	63.9	0.0	1.7	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.10	gi|257052989|ref|YP_003130822.1|	-	7.8e-09	35.6	0.0	5.7e-08	32.7	0.0	2.5	3	0	0	3	3	3	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.24	gi|257052989|ref|YP_003130822.1|	-	5.7e-06	25.9	0.0	1.5e-05	24.5	0.0	1.7	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
Helicase_C_4	PF13871.1	gi|257052989|ref|YP_003130822.1|	-	0.00059	19.3	0.0	0.00059	19.3	0.0	2.8	3	0	0	3	3	3	1	Helicase_C-like
DUF2075	PF09848.4	gi|257052989|ref|YP_003130822.1|	-	0.0012	17.8	1.4	0.0045	16.0	0.0	2.6	3	0	0	3	3	3	1	Uncharacterized	conserved	protein	(DUF2075)
AAA_34	PF13872.1	gi|257052989|ref|YP_003130822.1|	-	0.0071	15.1	0.2	0.015	14.0	0.2	1.5	1	0	0	1	1	1	1	P-loop	containing	NTP	hydrolase	pore-1
Sugarporin_N	PF11471.3	gi|257052989|ref|YP_003130822.1|	-	0.95	9.1	5.9	2.8	7.6	4.1	1.8	1	0	0	1	1	1	0	Maltoporin	periplasmic	N-terminal	extension
UvrD-helicase	PF00580.16	gi|257052990|ref|YP_003130823.1|	-	6.1e-50	170.2	0.0	2.2e-49	168.4	0.0	1.8	1	1	0	1	1	1	1	UvrD/REP	helicase	N-terminal	domain
UvrD_C	PF13361.1	gi|257052990|ref|YP_003130823.1|	-	1.7e-33	116.5	0.0	1.1e-18	67.8	0.0	2.2	1	1	0	2	2	2	2	UvrD-like	helicase	C-terminal	domain
AAA_19	PF13245.1	gi|257052990|ref|YP_003130823.1|	-	2.3e-14	52.8	0.0	2.9e-12	46.1	0.0	3.2	3	0	0	3	3	3	1	Part	of	AAA	domain
PDDEXK_1	PF12705.2	gi|257052990|ref|YP_003130823.1|	-	1.9e-12	47.1	1.3	5e-12	45.7	0.1	2.2	2	0	0	2	2	2	1	PD-(D/E)XK	nuclease	superfamily
UvrD_C_2	PF13538.1	gi|257052990|ref|YP_003130823.1|	-	6.9e-08	32.5	0.1	0.018	15.1	0.0	2.9	2	0	0	2	2	2	2	UvrD-like	helicase	C-terminal	domain
AAA_30	PF13604.1	gi|257052990|ref|YP_003130823.1|	-	5.6e-05	22.8	0.0	0.00016	21.3	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
Viral_helicase1	PF01443.13	gi|257052990|ref|YP_003130823.1|	-	0.008	15.7	0.1	9.3	5.6	0.0	3.4	3	0	0	3	3	3	1	Viral	(Superfamily	1)	RNA	helicase
PhoH	PF02562.11	gi|257052990|ref|YP_003130823.1|	-	0.02	14.1	0.0	6.2	5.9	0.0	2.3	2	0	0	2	2	2	0	PhoH-like	protein
AAA_12	PF13087.1	gi|257052990|ref|YP_003130823.1|	-	0.024	14.0	0.0	0.2	10.9	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
AAA_22	PF13401.1	gi|257052990|ref|YP_003130823.1|	-	0.028	14.5	0.0	0.12	12.4	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
DUF2800	PF10926.3	gi|257052990|ref|YP_003130823.1|	-	0.064	12.3	0.2	0.14	11.2	0.1	1.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2800)
Cas_Cas4	PF01930.12	gi|257052990|ref|YP_003130823.1|	-	0.091	12.6	0.3	0.23	11.3	0.2	1.7	1	1	0	1	1	1	0	Domain	of	unknown	function	DUF83
DEAD	PF00270.24	gi|257052990|ref|YP_003130823.1|	-	0.13	11.7	0.0	0.26	10.7	0.0	1.4	1	0	0	1	1	1	0	DEAD/DEAH	box	helicase
PDDEXK_1	PF12705.2	gi|257052991|ref|YP_003130824.1|	-	1.3e-16	60.7	0.2	3.7e-16	59.2	0.2	1.8	1	0	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
DUF457	PF04307.9	gi|257052992|ref|YP_003130825.1|	-	2.3e-18	66.0	8.9	3e-18	65.6	6.2	1.1	1	0	0	1	1	1	1	Predicted	membrane-bound	metal-dependent	hydrolase	(DUF457)
Acetyltransf_10	PF13673.1	gi|257052994|ref|YP_003130827.1|	-	1.8e-07	31.2	0.0	2.3e-07	30.9	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.1	gi|257052994|ref|YP_003130827.1|	-	1.7e-06	28.1	0.0	3.7e-06	27.0	0.0	1.7	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.19	gi|257052994|ref|YP_003130827.1|	-	8e-06	25.8	0.1	1.8e-05	24.6	0.1	1.9	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_9	PF13527.1	gi|257052994|ref|YP_003130827.1|	-	0.032	14.0	0.0	0.18	11.6	0.0	2.1	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|257052994|ref|YP_003130827.1|	-	0.11	12.3	0.1	0.67	9.7	0.1	2.0	1	1	0	1	1	1	0	FR47-like	protein
ThiS	PF02597.15	gi|257052995|ref|YP_003130828.1|	-	0.0029	18.0	0.2	0.004	17.5	0.2	1.3	1	0	0	1	1	1	1	ThiS	family
Rep_fac_C	PF08542.6	gi|257052996|ref|YP_003130829.1|	-	2.6e-22	78.5	0.0	6.9e-22	77.2	0.0	1.8	1	0	0	1	1	1	1	Replication	factor	C	C-terminal	domain
AAA	PF00004.24	gi|257052996|ref|YP_003130829.1|	-	2.5e-18	66.5	0.0	1.5e-17	64.0	0.0	2.0	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DNA_pol3_delta2	PF13177.1	gi|257052996|ref|YP_003130829.1|	-	1.3e-16	60.7	0.0	6.5e-12	45.4	0.0	2.2	1	1	1	2	2	2	2	DNA	polymerase	III,	delta	subunit
Rad17	PF03215.10	gi|257052996|ref|YP_003130829.1|	-	5.5e-10	38.5	0.0	4.2e-07	29.0	0.0	2.1	2	0	0	2	2	2	2	Rad17	cell	cycle	checkpoint	protein
RuvB_N	PF05496.7	gi|257052996|ref|YP_003130829.1|	-	2.3e-08	33.3	0.0	1.5e-07	30.6	0.0	2.2	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_14	PF13173.1	gi|257052996|ref|YP_003130829.1|	-	2.5e-08	33.8	0.0	4e-08	33.2	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|257052996|ref|YP_003130829.1|	-	5.1e-08	33.1	0.0	0.0035	17.4	0.0	2.4	1	1	1	2	2	2	2	AAA	domain
DNA_pol3_delta	PF06144.8	gi|257052996|ref|YP_003130829.1|	-	1.6e-05	24.5	0.0	2.4e-05	23.9	0.0	1.2	1	0	0	1	1	1	1	DNA	polymerase	III,	delta	subunit
AAA_17	PF13207.1	gi|257052996|ref|YP_003130829.1|	-	4.3e-05	24.3	0.2	0.0003	21.5	0.0	2.3	2	1	0	2	2	2	1	AAA	domain
AAA_16	PF13191.1	gi|257052996|ref|YP_003130829.1|	-	6.9e-05	22.8	5.0	0.0065	16.4	0.0	3.3	1	1	2	3	3	3	1	AAA	ATPase	domain
IstB_IS21	PF01695.12	gi|257052996|ref|YP_003130829.1|	-	0.00076	18.9	0.0	0.0016	17.8	0.0	1.5	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
TIP49	PF06068.8	gi|257052996|ref|YP_003130829.1|	-	0.00086	18.1	0.0	0.047	12.3	0.0	2.6	2	1	0	2	2	2	1	TIP49	C-terminus
Mg_chelatase	PF01078.16	gi|257052996|ref|YP_003130829.1|	-	0.00093	18.4	0.0	0.15	11.2	0.0	2.2	2	0	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
AAA_18	PF13238.1	gi|257052996|ref|YP_003130829.1|	-	0.0011	19.3	0.0	0.0022	18.2	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
Sigma54_activat	PF00158.21	gi|257052996|ref|YP_003130829.1|	-	0.0011	18.4	0.0	0.066	12.6	0.0	2.3	1	1	0	1	1	1	1	Sigma-54	interaction	domain
AAA_25	PF13481.1	gi|257052996|ref|YP_003130829.1|	-	0.0013	18.2	0.8	0.0047	16.3	0.1	2.1	1	1	1	2	2	2	1	AAA	domain
AAA_19	PF13245.1	gi|257052996|ref|YP_003130829.1|	-	0.0041	16.8	0.0	0.01	15.5	0.0	1.7	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_3	PF07726.6	gi|257052996|ref|YP_003130829.1|	-	0.0046	16.5	0.0	0.0087	15.6	0.0	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_29	PF13555.1	gi|257052996|ref|YP_003130829.1|	-	0.011	15.2	0.0	0.022	14.2	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_2	PF07724.9	gi|257052996|ref|YP_003130829.1|	-	0.013	15.4	0.0	0.034	14.0	0.0	1.7	1	1	0	1	1	1	0	AAA	domain	(Cdc48	subfamily)
Sigma54_activ_2	PF14532.1	gi|257052996|ref|YP_003130829.1|	-	0.014	15.4	0.0	0.032	14.2	0.0	1.5	1	1	0	1	1	1	0	Sigma-54	interaction	domain
Viral_helicase1	PF01443.13	gi|257052996|ref|YP_003130829.1|	-	0.015	14.8	0.0	0.022	14.3	0.0	1.2	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
NB-ARC	PF00931.17	gi|257052996|ref|YP_003130829.1|	-	0.016	14.1	0.0	0.026	13.3	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
AAA_5	PF07728.9	gi|257052996|ref|YP_003130829.1|	-	0.017	14.8	0.0	0.079	12.6	0.0	2.0	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
RNA_helicase	PF00910.17	gi|257052996|ref|YP_003130829.1|	-	0.029	14.5	0.0	0.06	13.5	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
AAA_10	PF12846.2	gi|257052996|ref|YP_003130829.1|	-	0.033	13.6	0.4	1.7	7.9	0.0	2.5	1	1	2	3	3	3	0	AAA-like	domain
DUF3400	PF11880.3	gi|257052996|ref|YP_003130829.1|	-	0.04	13.1	0.1	0.21	10.8	0.0	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3400)
AAA_24	PF13479.1	gi|257052996|ref|YP_003130829.1|	-	0.049	13.2	0.0	0.091	12.3	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.7	gi|257052996|ref|YP_003130829.1|	-	0.069	12.7	0.0	0.18	11.4	0.0	1.7	1	0	0	1	1	1	0	NACHT	domain
SNF2_N	PF00176.18	gi|257052996|ref|YP_003130829.1|	-	0.076	11.8	0.0	0.67	8.6	0.0	2.0	2	0	0	2	2	2	0	SNF2	family	N-terminal	domain
PhoH	PF02562.11	gi|257052996|ref|YP_003130829.1|	-	0.093	11.9	0.1	1.2	8.2	0.0	2.2	2	0	0	2	2	2	0	PhoH-like	protein
ArsA_ATPase	PF02374.10	gi|257052996|ref|YP_003130829.1|	-	0.11	11.5	0.0	0.2	10.6	0.0	1.4	1	0	0	1	1	1	0	Anion-transporting	ATPase
NTPase_1	PF03266.10	gi|257052996|ref|YP_003130829.1|	-	0.11	12.2	0.0	0.62	9.7	0.0	2.1	2	0	0	2	2	2	0	NTPase
AAA_33	PF13671.1	gi|257052996|ref|YP_003130829.1|	-	0.12	12.2	0.0	0.29	10.9	0.0	1.8	1	0	0	1	1	1	0	AAA	domain
DEAD	PF00270.24	gi|257052996|ref|YP_003130829.1|	-	0.13	11.7	0.1	9.4	5.6	0.0	2.2	1	1	1	2	2	2	0	DEAD/DEAH	box	helicase
AAA_23	PF13476.1	gi|257052996|ref|YP_003130829.1|	-	0.14	12.4	0.0	0.33	11.2	0.0	1.4	1	1	0	1	1	1	0	AAA	domain
Sensor	PF13796.1	gi|257052997|ref|YP_003130830.1|	-	2e-41	141.5	21.6	2.3e-41	141.3	14.9	1.0	1	0	0	1	1	1	1	Putative	sensor
DUF3917	PF13055.1	gi|257052997|ref|YP_003130830.1|	-	4	7.7	7.3	1.6	9.0	2.8	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3917)
tRNA-synt_2c	PF01411.14	gi|257052998|ref|YP_003130831.1|	-	1.1e-115	387.0	0.0	1.5e-115	386.6	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(A)
tRNA_SAD	PF07973.9	gi|257052998|ref|YP_003130831.1|	-	7.6e-13	48.1	1.4	1.5e-12	47.2	1.0	1.5	1	0	0	1	1	1	1	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
DHHA1	PF02272.14	gi|257052998|ref|YP_003130831.1|	-	2.2e-07	30.5	5.8	6.4e-07	28.9	4.0	1.8	1	0	0	1	1	1	1	DHHA1	domain
Lin-8	PF03353.10	gi|257052998|ref|YP_003130831.1|	-	0.017	14.3	1.9	0.033	13.4	1.3	1.4	1	0	0	1	1	1	0	Ras-mediated	vulval-induction	antagonist
DICT	PF10069.4	gi|257052999|ref|YP_003130832.1|	-	4e-21	74.8	0.0	6.2e-21	74.2	0.0	1.3	1	0	0	1	1	1	1	Sensory	domain	found	in	DIguanylate	Cyclases	&	Two-component	systems
Abhydrolase_6	PF12697.2	gi|257053000|ref|YP_003130833.1|	-	7.6e-32	111.0	13.7	8.9e-32	110.8	9.5	1.0	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.15	gi|257053000|ref|YP_003130833.1|	-	7.4e-20	71.4	1.1	7.3e-09	35.5	1.2	2.1	1	1	1	2	2	2	2	alpha/beta	hydrolase	fold
Abhydrolase_5	PF12695.2	gi|257053000|ref|YP_003130833.1|	-	1.1e-15	57.6	0.8	4.2e-15	55.7	0.6	1.7	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
DLH	PF01738.13	gi|257053000|ref|YP_003130833.1|	-	0.0005	19.4	0.1	0.31	10.3	0.0	2.4	2	0	0	2	2	2	2	Dienelactone	hydrolase	family
FSH1	PF03959.8	gi|257053000|ref|YP_003130833.1|	-	0.002	17.6	0.0	0.0028	17.1	0.0	1.3	1	0	0	1	1	1	1	Serine	hydrolase	(FSH1)
Abhydrolase_4	PF08386.5	gi|257053000|ref|YP_003130833.1|	-	0.0028	17.5	0.0	0.005	16.6	0.0	1.4	1	0	0	1	1	1	1	TAP-like	protein
Peptidase_S9	PF00326.16	gi|257053000|ref|YP_003130833.1|	-	0.0043	16.2	0.1	0.012	14.8	0.0	1.7	2	0	0	2	2	2	1	Prolyl	oligopeptidase	family
UPF0227	PF05728.7	gi|257053000|ref|YP_003130833.1|	-	0.013	15.2	0.0	0.033	13.8	0.0	1.6	2	0	0	2	2	2	0	Uncharacterised	protein	family	(UPF0227)
DUF2048	PF09752.4	gi|257053000|ref|YP_003130833.1|	-	0.022	13.6	0.1	0.059	12.2	0.0	1.6	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2048)
BAAT_C	PF08840.6	gi|257053000|ref|YP_003130833.1|	-	0.093	12.4	0.0	0.22	11.1	0.0	1.6	1	1	0	1	1	1	0	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
Thioesterase	PF00975.15	gi|257053000|ref|YP_003130833.1|	-	0.11	12.7	0.3	0.14	12.3	0.2	1.4	1	1	0	1	1	1	0	Thioesterase	domain
PHP	PF02811.14	gi|257053002|ref|YP_003130835.1|	-	5.9e-11	42.4	0.0	7e-11	42.2	0.0	1.3	1	1	0	1	1	1	1	PHP	domain
PHP_C	PF13263.1	gi|257053002|ref|YP_003130835.1|	-	0.048	13.1	0.2	0.12	11.8	0.1	1.6	1	0	0	1	1	1	0	PHP-associated
DUF2583	PF10762.4	gi|257053003|ref|YP_003130836.1|	-	1	9.5	8.6	0.51	10.5	2.0	2.5	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2583)
HupE_UreJ_2	PF13795.1	gi|257053003|ref|YP_003130836.1|	-	1.2	8.6	9.2	0.52	9.7	3.7	2.0	2	0	0	2	2	2	0	HupE	/	UreJ	protein
HTH_5	PF01022.15	gi|257053004|ref|YP_003130837.1|	-	2.9e-07	30.0	0.0	5.5e-07	29.1	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.2	gi|257053004|ref|YP_003130837.1|	-	4.8e-07	29.3	0.0	8.6e-07	28.5	0.0	1.5	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.14	gi|257053004|ref|YP_003130837.1|	-	8.1e-07	28.6	0.0	1.6e-06	27.7	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.1	gi|257053004|ref|YP_003130837.1|	-	6.1e-06	25.5	0.0	1.1e-05	24.7	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.2	gi|257053004|ref|YP_003130837.1|	-	1.4e-05	24.8	0.1	2.5e-05	23.9	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|257053004|ref|YP_003130837.1|	-	0.0001	21.8	0.0	0.00018	21.0	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR	PF01047.17	gi|257053004|ref|YP_003130837.1|	-	0.00082	19.0	0.0	0.0013	18.3	0.0	1.4	1	0	0	1	1	1	1	MarR	family
TFIIE_alpha	PF02002.12	gi|257053004|ref|YP_003130837.1|	-	0.00098	18.6	0.0	0.0015	17.9	0.0	1.3	1	0	0	1	1	1	1	TFIIE	alpha	subunit
HTH_27	PF13463.1	gi|257053004|ref|YP_003130837.1|	-	0.021	15.1	0.0	0.043	14.1	0.0	1.6	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
Desulfoferrod_N	PF06397.7	gi|257053004|ref|YP_003130837.1|	-	0.025	13.9	4.2	0.072	12.4	2.9	1.9	1	1	0	1	1	1	0	Desulfoferrodoxin,	N-terminal	domain
HTH_Crp_2	PF13545.1	gi|257053004|ref|YP_003130837.1|	-	0.036	13.8	0.0	0.077	12.8	0.0	1.5	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_CodY	PF08222.6	gi|257053004|ref|YP_003130837.1|	-	0.061	12.6	0.0	0.096	12.0	0.0	1.2	1	0	0	1	1	1	0	CodY	helix-turn-helix	domain
HTH_36	PF13730.1	gi|257053004|ref|YP_003130837.1|	-	0.078	13.1	0.0	0.18	11.9	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
Replic_Relax	PF13814.1	gi|257053004|ref|YP_003130837.1|	-	0.11	12.3	0.2	0.87	9.4	0.0	1.9	1	1	1	2	2	2	0	Replication-relaxation
PIN	PF01850.16	gi|257053005|ref|YP_003130838.1|	-	3.4e-13	49.9	0.0	4.3e-13	49.6	0.0	1.1	1	0	0	1	1	1	1	PIN	domain
DUF217	PF02697.9	gi|257053006|ref|YP_003130839.1|	-	0.1	12.8	0.1	0.15	12.3	0.1	1.3	1	1	0	1	1	1	0	Uncharacterized	ACR,	COG1753
BofA	PF07441.6	gi|257053008|ref|YP_003130841.1|	-	7.7e-05	22.6	17.0	0.00012	22.0	11.8	1.2	1	0	0	1	1	1	1	SigmaK-factor	processing	regulatory	protein	BofA
DUF3149	PF11346.3	gi|257053008|ref|YP_003130841.1|	-	0.61	9.7	3.4	1.9	8.1	0.1	2.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3149)
CitMHS	PF03600.11	gi|257053010|ref|YP_003130843.1|	-	9.3e-25	86.9	35.9	2.2e-15	56.0	3.0	2.0	2	0	0	2	2	2	2	Citrate	transporter
TrkA_C	PF02080.16	gi|257053010|ref|YP_003130843.1|	-	1.9e-24	85.0	6.4	2.4e-15	55.8	0.2	2.6	2	0	0	2	2	2	2	TrkA-C	domain
Na_sulph_symp	PF00939.14	gi|257053010|ref|YP_003130843.1|	-	1.2e-19	70.5	38.4	7.6e-13	48.1	11.9	3.2	2	1	1	3	3	3	3	Sodium:sulfate	symporter	transmembrane	region
DUF4342	PF14242.1	gi|257053010|ref|YP_003130843.1|	-	0.013	15.3	0.3	0.013	15.3	0.2	4.6	3	1	1	4	4	4	0	Domain	of	unknown	function	(DUF4342)
AAA_3	PF07726.6	gi|257053011|ref|YP_003130844.1|	-	5.9e-65	216.7	0.0	9.9e-65	216.0	0.0	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_5	PF07728.9	gi|257053011|ref|YP_003130844.1|	-	5.8e-17	61.7	0.0	1.5e-16	60.4	0.0	1.7	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.24	gi|257053011|ref|YP_003130844.1|	-	9.4e-07	29.0	0.0	1.4e-05	25.2	0.0	2.4	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.21	gi|257053011|ref|YP_003130844.1|	-	7.8e-05	22.2	0.0	0.0018	17.7	0.0	2.1	1	1	0	1	1	1	1	Sigma-54	interaction	domain
MCM	PF00493.18	gi|257053011|ref|YP_003130844.1|	-	0.00054	18.8	0.0	0.011	14.5	0.0	2.1	2	0	0	2	2	2	1	MCM2/3/5	family
RuvB_N	PF05496.7	gi|257053011|ref|YP_003130844.1|	-	0.017	14.2	0.0	0.25	10.3	0.0	2.4	1	1	0	1	1	1	0	Holliday	junction	DNA	helicase	ruvB	N-terminus
Mg_chelatase	PF01078.16	gi|257053011|ref|YP_003130844.1|	-	0.05	12.7	0.1	2.9	6.9	0.0	2.2	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
AAA_22	PF13401.1	gi|257053011|ref|YP_003130844.1|	-	0.058	13.5	0.0	0.64	10.1	0.0	2.4	2	1	0	2	2	2	0	AAA	domain
KaiC	PF06745.8	gi|257053011|ref|YP_003130844.1|	-	0.075	12.1	0.0	0.13	11.3	0.0	1.3	1	0	0	1	1	1	0	KaiC
DUF58	PF01882.13	gi|257053013|ref|YP_003130846.1|	-	1.8e-16	60.0	0.5	4.6e-16	58.7	0.3	1.7	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF58
DUF11	PF01345.13	gi|257053013|ref|YP_003130846.1|	-	0.0038	17.2	1.9	0.01	15.8	1.3	1.8	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF11
NPCBM_assoc	PF10633.4	gi|257053013|ref|YP_003130846.1|	-	0.017	15.1	0.0	0.062	13.3	0.0	2.0	1	0	0	1	1	1	0	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
TRAP_beta	PF05753.9	gi|257053013|ref|YP_003130846.1|	-	0.17	11.0	0.0	0.28	10.3	0.0	1.3	1	0	0	1	1	1	0	Translocon-associated	protein	beta	(TRAPB)
Toxin_4	PF00706.12	gi|257053013|ref|YP_003130846.1|	-	0.32	11.2	2.3	20	5.5	0.7	2.6	2	0	0	2	2	2	0	Anenome	neurotoxin
DUF4129	PF13559.1	gi|257053015|ref|YP_003130848.1|	-	1.2e-07	31.5	4.2	1.2e-07	31.5	2.9	2.5	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4129)
DUF4480	PF13715.1	gi|257053015|ref|YP_003130848.1|	-	0.00029	20.8	3.9	0.085	12.9	0.2	3.3	3	0	0	3	3	3	2	Domain	of	unknown	function	(DUF4480)
CarboxypepD_reg	PF13620.1	gi|257053015|ref|YP_003130848.1|	-	0.078	13.0	14.5	0.2	11.7	1.4	3.6	3	0	0	3	3	3	0	Carboxypeptidase	regulatory-like	domain
Peptidase_M48	PF01435.13	gi|257053016|ref|YP_003130849.1|	-	2.9e-24	85.8	0.0	6e-24	84.8	0.0	1.5	1	1	0	1	1	1	1	Peptidase	family	M48
Peptidase_M56	PF05569.6	gi|257053016|ref|YP_003130849.1|	-	2.1e-05	23.6	3.5	0.00024	20.2	0.0	3.0	3	0	0	3	3	3	1	BlaR1	peptidase	M56
SprT-like	PF10263.4	gi|257053016|ref|YP_003130849.1|	-	0.00048	19.8	0.0	0.00077	19.1	0.0	1.3	1	0	0	1	1	1	1	SprT-like	family
DUF2201_N	PF13203.1	gi|257053016|ref|YP_003130849.1|	-	0.0021	17.3	0.0	0.0043	16.2	0.0	1.5	1	0	0	1	1	1	1	Putative	metallopeptidase	domain
Peptidase_MA_2	PF13485.1	gi|257053016|ref|YP_003130849.1|	-	0.013	15.5	0.0	0.033	14.2	0.0	1.7	1	0	0	1	1	1	0	Peptidase	MA	superfamily
BSP	PF04450.7	gi|257053016|ref|YP_003130849.1|	-	0.063	12.7	0.0	0.092	12.1	0.0	1.2	1	0	0	1	1	1	0	Peptidase	of	plants	and	bacteria
DUF221	PF02714.10	gi|257053016|ref|YP_003130849.1|	-	0.096	11.5	0.2	0.096	11.5	0.1	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	DUF221
Na_sulph_symp	PF00939.14	gi|257053017|ref|YP_003130850.1|	-	0.4	9.4	4.2	0.42	9.4	2.9	1.0	1	0	0	1	1	1	0	Sodium:sulfate	symporter	transmembrane	region
NTP_transf_2	PF01909.18	gi|257053018|ref|YP_003130851.1|	-	1.3e-08	35.0	0.1	2.2e-08	34.3	0.1	1.4	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
HD_4	PF13328.1	gi|257053018|ref|YP_003130851.1|	-	0.025	14.2	0.9	2.7	7.6	0.0	2.2	2	0	0	2	2	2	0	HD	domain
DUF86	PF01934.12	gi|257053019|ref|YP_003130852.1|	-	4.1e-19	68.3	0.0	5.3e-19	68.0	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF86
DEAD	PF00270.24	gi|257053020|ref|YP_003130853.1|	-	4.2e-19	68.6	0.0	7.7e-19	67.7	0.0	1.4	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.26	gi|257053020|ref|YP_003130853.1|	-	1.6e-10	40.7	0.0	5e-10	39.0	0.0	1.9	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.10	gi|257053020|ref|YP_003130853.1|	-	6.1e-06	26.1	0.0	2e-05	24.5	0.0	1.8	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
PetG	PF02529.10	gi|257053021|ref|YP_003130854.1|	-	0.0051	16.3	5.1	0.044	13.3	0.3	2.2	2	0	0	2	2	2	2	Cytochrome	B6-F	complex	subunit	5
Bac_rhodopsin	PF01036.13	gi|257053021|ref|YP_003130854.1|	-	0.012	14.9	3.6	0.016	14.5	2.5	1.2	1	0	0	1	1	1	0	Bacteriorhodopsin-like	protein
COX15-CtaA	PF02628.10	gi|257053021|ref|YP_003130854.1|	-	0.028	13.3	1.2	0.031	13.1	0.9	1.0	1	0	0	1	1	1	0	Cytochrome	oxidase	assembly	protein
DUF4131	PF13567.1	gi|257053021|ref|YP_003130854.1|	-	0.062	12.7	0.3	0.069	12.5	0.2	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
ABC2_membrane_5	PF13346.1	gi|257053021|ref|YP_003130854.1|	-	0.073	12.3	3.2	0.085	12.1	2.2	1.0	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
OppC_N	PF12911.2	gi|257053021|ref|YP_003130854.1|	-	0.2	11.0	0.0	0.2	11.0	0.0	2.0	2	0	0	2	2	2	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
Tad	PF13400.1	gi|257053021|ref|YP_003130854.1|	-	0.82	9.7	8.1	1.6	8.7	2.1	2.1	1	1	1	2	2	2	0	Putative	Flp	pilus-assembly	TadE/G-like
DUF2892	PF11127.3	gi|257053021|ref|YP_003130854.1|	-	1.5	8.7	6.9	2.2	8.1	4.8	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2892)
Pox_A14	PF05767.7	gi|257053021|ref|YP_003130854.1|	-	7.4	6.6	6.6	19	5.2	4.6	1.7	1	1	0	1	1	1	0	Poxvirus	virion	envelope	protein	A14
DUF1275	PF06912.6	gi|257053021|ref|YP_003130854.1|	-	8.4	5.5	10.7	7.7	5.6	1.3	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1275)
Peptidase_M22	PF00814.20	gi|257053022|ref|YP_003130855.1|	-	2.6e-77	259.9	0.0	3.7e-77	259.4	0.0	1.1	1	0	0	1	1	1	1	Glycoprotease	family
APH	PF01636.18	gi|257053022|ref|YP_003130855.1|	-	3.7e-05	23.5	6.2	0.015	15.0	0.7	2.5	1	1	1	2	2	2	2	Phosphotransferase	enzyme	family
RIO1	PF01163.17	gi|257053022|ref|YP_003130855.1|	-	0.0031	16.8	0.0	0.0074	15.6	0.0	1.6	1	1	0	1	1	1	1	RIO1	family
Pkinase	PF00069.20	gi|257053022|ref|YP_003130855.1|	-	0.0084	15.2	0.0	0.013	14.6	0.0	1.2	1	0	0	1	1	1	1	Protein	kinase	domain
Kdo	PF06293.9	gi|257053022|ref|YP_003130855.1|	-	0.016	14.2	0.1	0.037	13.0	0.1	1.6	1	1	0	1	1	1	0	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
YycC	PF14174.1	gi|257053022|ref|YP_003130855.1|	-	0.085	12.5	0.0	0.17	11.5	0.0	1.4	1	0	0	1	1	1	0	YycC-like	protein
Pkinase_Tyr	PF07714.12	gi|257053022|ref|YP_003130855.1|	-	0.12	11.4	0.0	0.17	10.9	0.0	1.2	1	0	0	1	1	1	0	Protein	tyrosine	kinase
Ribosomal_S27	PF01599.14	gi|257053023|ref|YP_003130856.1|	-	1.8e-11	43.6	3.2	2.1e-11	43.4	2.2	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S27a
RNA_POL_M_15KD	PF02150.11	gi|257053023|ref|YP_003130856.1|	-	0.0047	16.5	0.6	0.0071	16.0	0.4	1.3	1	0	0	1	1	1	1	RNA	polymerases	M/15	Kd	subunit
zf-RING_3	PF14369.1	gi|257053023|ref|YP_003130856.1|	-	0.018	15.0	0.2	0.018	15.0	0.1	1.8	1	1	1	2	2	2	0	zinc-finger
DZR	PF12773.2	gi|257053023|ref|YP_003130856.1|	-	0.024	14.4	0.5	0.032	14.0	0.3	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
Fer4_6	PF12837.2	gi|257053023|ref|YP_003130856.1|	-	0.03	14.1	3.7	0.42	10.5	0.2	2.1	2	0	0	2	2	2	0	4Fe-4S	binding	domain
IBR	PF01485.16	gi|257053023|ref|YP_003130856.1|	-	0.032	14.1	0.3	0.032	14.0	0.2	1.1	1	0	0	1	1	1	0	IBR	domain
Ribosomal_L37e	PF01907.14	gi|257053023|ref|YP_003130856.1|	-	0.04	13.7	0.7	0.05	13.4	0.5	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L37e
FYVE	PF01363.16	gi|257053023|ref|YP_003130856.1|	-	0.049	13.5	1.1	0.054	13.4	0.7	1.1	1	0	0	1	1	1	0	FYVE	zinc	finger
Prok-RING_1	PF14446.1	gi|257053023|ref|YP_003130856.1|	-	0.055	13.2	0.4	0.069	12.8	0.3	1.2	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
zinc-ribbons_6	PF07191.7	gi|257053023|ref|YP_003130856.1|	-	0.057	13.2	0.8	0.073	12.8	0.5	1.1	1	0	0	1	1	1	0	zinc-ribbons
NCD3G	PF07562.9	gi|257053023|ref|YP_003130856.1|	-	0.08	12.6	1.0	0.093	12.4	0.7	1.2	1	0	0	1	1	1	0	Nine	Cysteines	Domain	of	family	3	GPCR
DNA_RNApol_7kD	PF03604.8	gi|257053023|ref|YP_003130856.1|	-	0.11	11.9	0.8	0.15	11.5	0.6	1.2	1	0	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zinc_ribbon_2	PF13240.1	gi|257053023|ref|YP_003130856.1|	-	0.19	11.2	2.6	0.73	9.4	0.0	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-CSL	PF05207.8	gi|257053023|ref|YP_003130856.1|	-	0.32	10.5	3.0	1.1	8.8	2.1	1.8	1	1	0	1	1	1	0	CSL	zinc	finger
Zn_Tnp_IS1	PF03811.8	gi|257053023|ref|YP_003130856.1|	-	0.38	10.2	3.4	7.1	6.2	0.1	2.4	2	1	1	3	3	3	0	InsA	N-terminal	domain
Fer4_3	PF12798.2	gi|257053023|ref|YP_003130856.1|	-	0.48	11.1	3.3	9.4	7.0	0.1	2.2	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4	PF00037.22	gi|257053023|ref|YP_003130856.1|	-	0.79	9.4	3.0	12	5.7	0.1	2.1	2	0	0	2	2	2	0	4Fe-4S	binding	domain
DUF2082	PF09855.4	gi|257053023|ref|YP_003130856.1|	-	1.4	8.7	4.2	3.2	7.6	0.4	2.5	1	1	2	3	3	3	0	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
zf-NADH-PPase	PF09297.6	gi|257053023|ref|YP_003130856.1|	-	3.5	7.2	7.6	92	2.6	5.2	2.2	1	1	0	1	1	1	0	NADH	pyrophosphatase	zinc	ribbon	domain
Nudix_N_2	PF14803.1	gi|257053023|ref|YP_003130856.1|	-	9.1	6.0	8.8	6.2	6.6	0.6	2.1	1	1	1	2	2	2	0	Nudix	N-terminal
Ribosomal_S24e	PF01282.14	gi|257053024|ref|YP_003130857.1|	-	4.1e-29	100.2	0.3	4.9e-29	99.9	0.2	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S24e
DNA_pol3_delta2	PF13177.1	gi|257053025|ref|YP_003130858.1|	-	7.9e-11	41.8	0.0	1.3e-10	41.1	0.0	1.3	1	0	0	1	1	1	1	DNA	polymerase	III,	delta	subunit
Rep_fac_C	PF08542.6	gi|257053025|ref|YP_003130858.1|	-	5.3e-10	39.1	0.0	1e-09	38.2	0.0	1.5	1	0	0	1	1	1	1	Replication	factor	C	C-terminal	domain
AAA	PF00004.24	gi|257053025|ref|YP_003130858.1|	-	8.9e-09	35.6	0.0	2e-08	34.4	0.0	1.6	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.1	gi|257053025|ref|YP_003130858.1|	-	1.5e-08	34.8	0.0	7.5e-08	32.5	0.0	2.0	1	1	1	2	2	2	1	AAA	domain
AAA_16	PF13191.1	gi|257053025|ref|YP_003130858.1|	-	3.3e-08	33.7	0.5	6.3e-06	26.2	0.0	3.1	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_14	PF13173.1	gi|257053025|ref|YP_003130858.1|	-	5.9e-05	22.9	0.0	0.00015	21.7	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
Sigma54_activat	PF00158.21	gi|257053025|ref|YP_003130858.1|	-	0.00016	21.2	0.0	0.01	15.3	0.0	2.3	2	0	0	2	2	2	1	Sigma-54	interaction	domain
AAA_17	PF13207.1	gi|257053025|ref|YP_003130858.1|	-	0.00076	20.2	0.0	0.0017	19.1	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_24	PF13479.1	gi|257053025|ref|YP_003130858.1|	-	0.0011	18.5	0.0	0.0019	17.8	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_19	PF13245.1	gi|257053025|ref|YP_003130858.1|	-	0.0013	18.4	1.2	0.0096	15.6	0.0	2.8	3	1	0	3	3	3	1	Part	of	AAA	domain
DUF2075	PF09848.4	gi|257053025|ref|YP_003130858.1|	-	0.0013	17.7	0.1	0.0023	16.9	0.0	1.4	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2075)
NACHT	PF05729.7	gi|257053025|ref|YP_003130858.1|	-	0.0018	17.9	0.0	0.0034	17.0	0.0	1.4	1	0	0	1	1	1	1	NACHT	domain
T2SE	PF00437.15	gi|257053025|ref|YP_003130858.1|	-	0.0033	16.3	0.0	0.028	13.3	0.0	2.3	3	0	0	3	3	3	1	Type	II/IV	secretion	system	protein
FtsK_SpoIIIE	PF01580.13	gi|257053025|ref|YP_003130858.1|	-	0.0037	16.7	0.0	0.011	15.2	0.0	1.8	2	0	0	2	2	1	1	FtsK/SpoIIIE	family
AAA_30	PF13604.1	gi|257053025|ref|YP_003130858.1|	-	0.0044	16.6	0.1	0.011	15.3	0.1	1.7	1	1	0	1	1	1	1	AAA	domain
Zeta_toxin	PF06414.7	gi|257053025|ref|YP_003130858.1|	-	0.01	14.9	0.2	0.034	13.2	0.1	1.9	1	1	0	1	1	1	0	Zeta	toxin
Viral_helicase1	PF01443.13	gi|257053025|ref|YP_003130858.1|	-	0.012	15.1	0.0	0.018	14.5	0.0	1.3	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
N6_Mtase	PF02384.11	gi|257053025|ref|YP_003130858.1|	-	0.014	14.4	0.0	0.021	13.9	0.0	1.2	1	0	0	1	1	1	0	N-6	DNA	Methylase
AAA_10	PF12846.2	gi|257053025|ref|YP_003130858.1|	-	0.026	13.9	0.2	0.13	11.7	0.1	2.0	1	1	0	1	1	1	0	AAA-like	domain
Se-cys_synth_N	PF12390.3	gi|257053025|ref|YP_003130858.1|	-	0.04	14.0	1.8	0.075	13.1	0.1	2.4	2	0	0	2	2	2	0	Selenocysteine	synthase	N	terminal
IstB_IS21	PF01695.12	gi|257053025|ref|YP_003130858.1|	-	0.047	13.1	0.0	0.23	10.8	0.0	2.1	3	0	0	3	3	3	0	IstB-like	ATP	binding	protein
AAA_33	PF13671.1	gi|257053025|ref|YP_003130858.1|	-	0.054	13.3	0.0	0.14	12.0	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
Sigma54_activ_2	PF14532.1	gi|257053025|ref|YP_003130858.1|	-	0.091	12.8	0.0	0.46	10.5	0.0	1.9	2	0	0	2	2	2	0	Sigma-54	interaction	domain
TetR_C_6	PF13977.1	gi|257053025|ref|YP_003130858.1|	-	0.093	12.7	4.5	9.3	6.3	0.1	3.5	4	0	0	4	4	4	0	Bacterial	transcriptional	repressor
AAA_11	PF13086.1	gi|257053025|ref|YP_003130858.1|	-	0.096	12.2	0.0	0.32	10.5	0.0	1.8	1	1	1	2	2	2	0	AAA	domain
Arch_ATPase	PF01637.13	gi|257053025|ref|YP_003130858.1|	-	0.1	12.2	0.0	0.18	11.4	0.0	1.5	1	1	0	1	1	1	0	Archaeal	ATPase
TIP49	PF06068.8	gi|257053025|ref|YP_003130858.1|	-	0.13	10.9	0.0	1.7	7.2	0.0	2.1	2	0	0	2	2	2	0	TIP49	C-terminus
ABC_tran	PF00005.22	gi|257053025|ref|YP_003130858.1|	-	0.13	12.5	0.0	1.6	8.9	0.0	2.3	2	1	0	2	2	2	0	ABC	transporter
MacB_PCD	PF12704.2	gi|257053026|ref|YP_003130859.1|	-	5.1e-29	101.5	4.4	5.1e-29	101.5	3.0	2.1	2	0	0	2	2	2	1	MacB-like	periplasmic	core	domain
FtsX	PF02687.16	gi|257053026|ref|YP_003130859.1|	-	2.4e-26	91.8	8.3	2.4e-26	91.8	5.8	2.2	2	0	0	2	2	2	1	FtsX-like	permease	family
DctQ	PF04290.7	gi|257053026|ref|YP_003130859.1|	-	3	7.5	9.5	2.9	7.6	0.1	2.7	2	1	0	2	2	2	0	Tripartite	ATP-independent	periplasmic	transporters,	DctQ	component
ABC_tran	PF00005.22	gi|257053027|ref|YP_003130860.1|	-	2.3e-35	121.8	0.0	3.1e-35	121.4	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|257053027|ref|YP_003130860.1|	-	5e-11	43.1	0.2	0.00013	22.0	0.0	2.1	1	1	0	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|257053027|ref|YP_003130860.1|	-	3.1e-06	26.5	0.0	0.06	12.5	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.1	gi|257053027|ref|YP_003130860.1|	-	2.5e-05	23.7	0.9	4.5e-05	22.8	0.6	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_10	PF12846.2	gi|257053027|ref|YP_003130860.1|	-	0.00025	20.6	1.1	0.00025	20.5	0.2	1.6	2	1	0	2	2	2	1	AAA-like	domain
DUF258	PF03193.11	gi|257053027|ref|YP_003130860.1|	-	0.00047	19.3	0.0	0.00065	18.9	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_25	PF13481.1	gi|257053027|ref|YP_003130860.1|	-	0.0016	17.8	2.2	0.0042	16.5	1.5	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_23	PF13476.1	gi|257053027|ref|YP_003130860.1|	-	0.0035	17.6	0.5	0.0053	17.1	0.3	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|257053027|ref|YP_003130860.1|	-	0.0037	18.0	1.5	0.0068	17.2	1.0	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|257053027|ref|YP_003130860.1|	-	0.0039	17.2	1.4	0.0087	16.0	0.9	1.9	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|257053027|ref|YP_003130860.1|	-	0.012	15.7	0.6	0.032	14.3	0.4	1.9	1	1	0	1	1	1	0	AAA	domain
MMR_HSR1	PF01926.18	gi|257053027|ref|YP_003130860.1|	-	0.014	15.3	0.3	0.054	13.4	0.1	2.0	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
AAA_18	PF13238.1	gi|257053027|ref|YP_003130860.1|	-	0.016	15.4	1.0	0.17	12.2	0.4	2.1	1	1	0	2	2	2	0	AAA	domain
AAA_19	PF13245.1	gi|257053027|ref|YP_003130860.1|	-	0.018	14.8	4.6	0.16	11.7	0.8	2.9	2	1	0	2	2	2	0	Part	of	AAA	domain
AAA_33	PF13671.1	gi|257053027|ref|YP_003130860.1|	-	0.043	13.7	2.1	0.092	12.6	1.4	1.8	1	1	0	1	1	1	0	AAA	domain
MobB	PF03205.9	gi|257053027|ref|YP_003130860.1|	-	0.049	13.3	0.0	0.094	12.4	0.0	1.6	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
DUF3987	PF13148.1	gi|257053027|ref|YP_003130860.1|	-	0.056	12.0	0.0	0.085	11.4	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3987)
AAA_30	PF13604.1	gi|257053027|ref|YP_003130860.1|	-	0.06	12.9	0.3	0.27	10.7	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
NACHT	PF05729.7	gi|257053027|ref|YP_003130860.1|	-	0.065	12.8	0.1	0.27	10.8	0.0	1.9	2	0	0	2	2	2	0	NACHT	domain
SbcCD_C	PF13558.1	gi|257053027|ref|YP_003130860.1|	-	0.078	12.9	0.1	0.82	9.6	0.2	2.4	2	1	0	2	2	1	0	Putative	exonuclease	SbcCD,	C	subunit
ABC_ATPase	PF09818.4	gi|257053027|ref|YP_003130860.1|	-	0.083	11.4	0.9	0.55	8.7	0.2	2.0	2	0	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
cobW	PF02492.14	gi|257053027|ref|YP_003130860.1|	-	0.14	11.5	0.4	0.32	10.4	0.3	1.6	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_28	PF13521.1	gi|257053027|ref|YP_003130860.1|	-	0.75	9.7	3.6	0.39	10.6	0.5	1.9	2	1	0	2	2	2	0	AAA	domain
Peripla_BP_2	PF01497.13	gi|257053028|ref|YP_003130861.1|	-	1.6e-24	86.4	0.0	2.1e-24	85.9	0.0	1.2	1	0	0	1	1	1	1	Periplasmic	binding	protein
Glyco_hydro_11	PF00457.12	gi|257053029|ref|YP_003130862.1|	-	1.6e-74	249.1	17.8	1.6e-74	249.1	12.3	2.8	3	0	0	3	3	3	1	Glycosyl	hydrolases	family	11
CBM_6	PF03422.10	gi|257053029|ref|YP_003130862.1|	-	2.4e-21	76.1	7.9	2.4e-21	76.1	5.5	4.4	4	3	2	6	6	6	1	Carbohydrate	binding	module	(family	6)
PKD	PF00801.15	gi|257053029|ref|YP_003130862.1|	-	1.1e-06	28.2	3.8	1.1e-06	28.2	2.7	3.6	3	1	0	3	3	3	1	PKD	domain
Cadherin	PF00028.12	gi|257053029|ref|YP_003130862.1|	-	0.1	12.8	1.1	0.64	10.3	0.3	2.7	3	1	0	3	3	3	0	Cadherin	domain
Glyco_hydro_11	PF00457.12	gi|257053030|ref|YP_003130863.1|	-	2.8e-73	245.1	19.2	2.8e-73	245.1	13.3	2.9	2	1	2	4	4	4	2	Glycosyl	hydrolases	family	11
RicinB_lectin_2	PF14200.1	gi|257053030|ref|YP_003130863.1|	-	8.2e-34	116.1	14.3	2.5e-25	88.8	4.3	3.1	2	1	1	3	3	3	2	Ricin-type	beta-trefoil	lectin	domain-like
Ricin_B_lectin	PF00652.17	gi|257053030|ref|YP_003130863.1|	-	1e-16	61.0	14.3	4.8e-15	55.6	7.8	3.7	2	1	0	2	2	2	1	Ricin-type	beta-trefoil	lectin	domain
Lysine_decarbox	PF03641.9	gi|257053033|ref|YP_003130866.1|	-	3.2e-07	30.2	0.3	5.7e-07	29.4	0.1	1.5	1	1	0	1	1	1	1	Possible	lysine	decarboxylase
DNA_processg_A	PF02481.10	gi|257053033|ref|YP_003130866.1|	-	0.00017	20.5	0.9	0.0024	16.7	0.2	2.0	1	1	1	2	2	2	1	DNA	recombination-mediator	protein	A
AA_kinase	PF00696.23	gi|257053033|ref|YP_003130866.1|	-	0.075	12.5	0.5	0.14	11.6	0.3	1.4	1	1	0	1	1	1	0	Amino	acid	kinase	family
Cupin_2	PF07883.6	gi|257053034|ref|YP_003130867.1|	-	3.5e-13	48.8	0.0	4.5e-13	48.5	0.0	1.2	1	0	0	1	1	1	1	Cupin	domain
AraC_binding	PF02311.14	gi|257053034|ref|YP_003130867.1|	-	2.5e-09	36.9	0.0	3e-09	36.6	0.0	1.1	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
AraC_binding_2	PF14525.1	gi|257053034|ref|YP_003130867.1|	-	0.00013	21.6	0.1	0.00018	21.1	0.0	1.3	1	1	0	1	1	1	1	AraC-binding-like	domain
Cupin_3	PF05899.7	gi|257053034|ref|YP_003130867.1|	-	0.0007	18.9	0.0	0.00092	18.5	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF861)
MannoseP_isomer	PF01050.13	gi|257053034|ref|YP_003130867.1|	-	0.0014	18.2	0.0	0.0018	17.8	0.0	1.3	1	0	0	1	1	1	1	Mannose-6-phosphate	isomerase
Cupin_6	PF12852.2	gi|257053034|ref|YP_003130867.1|	-	0.0029	17.2	0.0	0.0036	16.9	0.0	1.2	1	0	0	1	1	1	1	Cupin
DUF2917	PF11142.3	gi|257053034|ref|YP_003130867.1|	-	0.0043	16.2	0.0	0.0069	15.5	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2917)
DUF1255	PF06865.6	gi|257053034|ref|YP_003130867.1|	-	0.024	14.9	0.0	0.033	14.4	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1255)
DUF1498	PF07385.7	gi|257053034|ref|YP_003130867.1|	-	0.028	13.5	0.0	0.032	13.3	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1498)
AraC_N	PF06719.8	gi|257053034|ref|YP_003130867.1|	-	0.057	12.7	0.0	0.076	12.3	0.0	1.2	1	0	0	1	1	1	0	AraC-type	transcriptional	regulator	N-terminus
KduI	PF04962.7	gi|257053034|ref|YP_003130867.1|	-	0.066	12.2	0.0	0.076	12.0	0.0	1.1	1	0	0	1	1	1	0	KduI/IolB	family
EutQ	PF06249.7	gi|257053034|ref|YP_003130867.1|	-	0.12	11.8	0.0	0.14	11.7	0.0	1.2	1	0	0	1	1	1	0	Ethanolamine	utilisation	protein	EutQ
2OG-FeII_Oxy_5	PF13759.1	gi|257053034|ref|YP_003130867.1|	-	0.15	12.3	0.0	0.21	11.9	0.0	1.3	1	1	0	1	1	1	0	Putative	2OG-Fe(II)	oxygenase
Methyltransf_23	PF13489.1	gi|257053035|ref|YP_003130868.1|	-	4.5e-12	45.9	0.0	5.4e-12	45.7	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|257053035|ref|YP_003130868.1|	-	1.1e-11	45.1	0.0	1.6e-11	44.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|257053035|ref|YP_003130868.1|	-	3.3e-08	33.2	0.0	3.8e-08	33.0	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|257053035|ref|YP_003130868.1|	-	4.1e-08	33.4	0.0	7.7e-08	32.6	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|257053035|ref|YP_003130868.1|	-	1.2e-07	32.3	0.0	1.7e-07	31.7	0.0	1.4	1	1	0	1	1	1	1	Methyltransferase	domain
MetW	PF07021.7	gi|257053035|ref|YP_003130868.1|	-	1.3e-07	31.2	0.0	2e-07	30.5	0.0	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Methyltransf_26	PF13659.1	gi|257053035|ref|YP_003130868.1|	-	1.9e-07	31.0	0.0	2.8e-07	30.5	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|257053035|ref|YP_003130868.1|	-	2.9e-07	30.8	0.0	5.2e-07	30.0	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_9	PF08003.6	gi|257053035|ref|YP_003130868.1|	-	0.00028	19.6	0.0	0.00037	19.2	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
Methyltransf_4	PF02390.12	gi|257053035|ref|YP_003130868.1|	-	0.027	13.5	0.0	0.041	12.9	0.0	1.3	1	0	0	1	1	1	0	Putative	methyltransferase
DUF938	PF06080.7	gi|257053035|ref|YP_003130868.1|	-	0.035	13.6	0.0	0.061	12.8	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF938)
Methyltransf_17	PF12692.2	gi|257053035|ref|YP_003130868.1|	-	0.036	13.7	0.0	0.047	13.3	0.0	1.3	1	0	0	1	1	1	0	S-adenosyl-L-methionine	methyltransferase
TehB	PF03848.9	gi|257053035|ref|YP_003130868.1|	-	0.081	12.0	0.0	0.098	11.8	0.0	1.2	1	0	0	1	1	1	0	Tellurite	resistance	protein	TehB
Methyltransf_24	PF13578.1	gi|257053035|ref|YP_003130868.1|	-	0.087	13.6	0.1	0.26	12.1	0.0	1.9	1	1	1	2	2	2	0	Methyltransferase	domain
Pox_MCEL	PF03291.11	gi|257053035|ref|YP_003130868.1|	-	0.092	11.5	0.0	0.13	11.1	0.0	1.1	1	0	0	1	1	1	0	mRNA	capping	enzyme
Methyltransf_PK	PF05891.7	gi|257053035|ref|YP_003130868.1|	-	0.12	11.6	0.0	0.14	11.4	0.0	1.1	1	0	0	1	1	1	0	AdoMet	dependent	proline	di-methyltransferase
Aminotran_3	PF00202.16	gi|257053038|ref|YP_003130871.1|	-	2.6e-68	230.4	0.0	3.4e-68	229.9	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-III
Aminotran_1_2	PF00155.16	gi|257053038|ref|YP_003130871.1|	-	0.0002	20.4	0.0	0.00048	19.1	0.0	1.7	1	1	0	1	1	1	1	Aminotransferase	class	I	and	II
TPR_1	PF00515.23	gi|257053038|ref|YP_003130871.1|	-	0.062	12.9	0.3	3.7	7.3	0.5	2.3	2	0	0	2	2	2	0	Tetratricopeptide	repeat
TPR_2	PF07719.12	gi|257053038|ref|YP_003130871.1|	-	0.12	12.3	0.9	18	5.5	0.6	2.4	2	0	0	2	2	2	0	Tetratricopeptide	repeat
TrmB	PF01978.14	gi|257053039|ref|YP_003130872.1|	-	4.3e-18	64.7	0.0	6.5e-18	64.1	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.5	gi|257053039|ref|YP_003130872.1|	-	7.2e-05	22.3	0.0	0.00012	21.5	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Rrf2	PF02082.15	gi|257053039|ref|YP_003130872.1|	-	0.0043	17.1	0.0	0.0074	16.3	0.0	1.3	1	0	0	1	1	1	1	Transcriptional	regulator
MarR_2	PF12802.2	gi|257053039|ref|YP_003130872.1|	-	0.038	13.6	0.0	0.083	12.5	0.0	1.5	1	0	0	1	1	1	0	MarR	family
HTH_34	PF13601.1	gi|257053039|ref|YP_003130872.1|	-	0.078	13.0	0.0	0.14	12.1	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_24	PF13412.1	gi|257053039|ref|YP_003130872.1|	-	0.08	12.3	0.0	0.13	11.6	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
DUF650	PF04894.7	gi|257053040|ref|YP_003130873.1|	-	1.2e-103	346.3	0.0	1.5e-103	346.0	0.0	1.1	1	0	0	1	1	1	1	Archaeal	protein	of	unknown	function	(DUF650)
DUF651	PF04895.7	gi|257053040|ref|YP_003130873.1|	-	1.8e-33	114.4	0.3	4.2e-32	110.0	0.0	2.9	3	1	0	3	3	3	1	Archaeal	protein	of	unknown	function	(DUF651)
Peptidase_M50	PF02163.17	gi|257053041|ref|YP_003130874.1|	-	1.8e-28	98.8	0.0	4e-28	97.6	0.0	1.6	1	1	0	1	1	1	1	Peptidase	family	M50
PDZ_2	PF13180.1	gi|257053041|ref|YP_003130874.1|	-	2.2e-22	78.7	2.6	6.5e-08	32.3	0.0	3.3	2	1	1	3	3	3	3	PDZ	domain
PDZ	PF00595.19	gi|257053041|ref|YP_003130874.1|	-	2.5e-10	40.3	3.1	1.5e-05	25.1	0.1	3.5	2	1	1	3	3	3	2	PDZ	domain	(Also	known	as	DHR	or	GLGF)
Tricorn_PDZ	PF14685.1	gi|257053041|ref|YP_003130874.1|	-	3.8e-07	29.7	1.7	0.0017	18.1	0.0	3.2	3	0	0	3	3	3	2	Tricorn	protease	PDZ	domain
DUF3333	PF11812.3	gi|257053041|ref|YP_003130874.1|	-	0.058	13.3	0.2	0.12	12.4	0.1	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3333)
tRNA-synt_1f	PF01921.13	gi|257053042|ref|YP_003130875.1|	-	2.1e-97	326.0	0.0	2.9e-97	325.5	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(K)
tRNA-synt_1g	PF09334.6	gi|257053042|ref|YP_003130875.1|	-	2.3e-09	36.4	0.0	1.3e-05	24.0	0.0	2.1	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(M)
tRNA-synt_1e	PF01406.14	gi|257053042|ref|YP_003130875.1|	-	0.0002	20.5	0.0	0.0043	16.2	0.0	2.5	3	0	0	3	3	3	1	tRNA	synthetases	class	I	(C)	catalytic	domain
AA_kinase	PF00696.23	gi|257053043|ref|YP_003130876.1|	-	1.7e-32	112.8	2.9	2e-32	112.6	2.0	1.1	1	0	0	1	1	1	1	Amino	acid	kinase	family
HAD	PF12710.2	gi|257053043|ref|YP_003130876.1|	-	0.023	14.8	0.1	0.032	14.4	0.1	1.6	1	1	0	1	1	1	0	haloacid	dehalogenase-like	hydrolase
IgG_binding_B	PF01378.12	gi|257053043|ref|YP_003130876.1|	-	0.12	12.2	0.2	0.27	11.0	0.1	1.6	1	0	0	1	1	1	0	B	domain
Peptidase_M50	PF02163.17	gi|257053045|ref|YP_003130878.1|	-	2.4e-18	65.7	1.3	9.6e-17	60.5	0.9	2.5	1	1	0	1	1	1	1	Peptidase	family	M50
Sulfatase	PF00884.18	gi|257053046|ref|YP_003130879.1|	-	0.00034	19.8	0.1	0.00042	19.6	0.1	1.2	1	0	0	1	1	1	1	Sulfatase
AIRS	PF00586.19	gi|257053047|ref|YP_003130880.1|	-	3.4e-16	59.2	3.5	8.6e-16	57.9	2.4	1.7	1	0	0	1	1	1	1	AIR	synthase	related	protein,	N-terminal	domain
AIRS_C	PF02769.17	gi|257053047|ref|YP_003130880.1|	-	3.6e-12	46.5	0.1	4.9e-12	46.1	0.1	1.2	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
DUF3077	PF11275.3	gi|257053047|ref|YP_003130880.1|	-	0.07	13.0	0.0	1.3	9.0	0.0	2.7	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF3077)
UPF0104	PF03706.8	gi|257053048|ref|YP_003130881.1|	-	1.8e-27	96.4	35.0	2.4e-27	95.9	24.3	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0104)
Ribosomal_S19e	PF01090.14	gi|257053049|ref|YP_003130882.1|	-	8.6e-49	164.5	0.0	9.7e-49	164.3	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S19e
GntR	PF00392.16	gi|257053049|ref|YP_003130882.1|	-	0.0009	18.6	0.0	0.0031	16.9	0.0	1.9	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
TrmB	PF01978.14	gi|257053049|ref|YP_003130882.1|	-	0.069	12.8	0.2	0.67	9.7	0.0	2.3	3	0	0	3	3	3	0	Sugar-specific	transcriptional	regulator	TrmB
Rrf2	PF02082.15	gi|257053049|ref|YP_003130882.1|	-	0.14	12.2	0.0	0.32	11.1	0.0	1.6	1	0	0	1	1	1	0	Transcriptional	regulator
dsDNA_bind	PF01984.15	gi|257053050|ref|YP_003130883.1|	-	7.2e-29	99.9	10.0	8.4e-29	99.7	6.9	1.0	1	0	0	1	1	1	1	Double-stranded	DNA-binding	domain
PCI	PF01399.22	gi|257053050|ref|YP_003130883.1|	-	0.092	13.0	0.3	0.25	11.6	0.1	1.7	1	1	1	2	2	2	0	PCI	domain
EF-1_beta_acid	PF10587.4	gi|257053050|ref|YP_003130883.1|	-	0.13	12.4	0.7	0.13	12.4	0.5	2.7	3	0	0	3	3	3	0	Eukaryotic	elongation	factor	1	beta	central	acidic	region
DUF2514	PF10721.4	gi|257053050|ref|YP_003130883.1|	-	0.31	10.7	7.5	0.37	10.4	5.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2514)
APC_CDC26	PF10471.4	gi|257053050|ref|YP_003130883.1|	-	0.59	10.8	8.9	0.8	10.4	4.2	2.0	1	1	1	2	2	2	0	Anaphase-promoting	complex	APC	subunit	1
Asn_synthase	PF00733.16	gi|257053051|ref|YP_003130884.1|	-	8.7e-06	25.4	0.1	1.2e-05	24.9	0.1	1.3	1	0	0	1	1	1	1	Asparagine	synthase
PAPS_reduct	PF01507.14	gi|257053051|ref|YP_003130884.1|	-	0.006	16.4	0.0	0.0093	15.7	0.0	1.3	1	0	0	1	1	1	1	Phosphoadenosine	phosphosulfate	reductase	family
NAD_synthase	PF02540.12	gi|257053051|ref|YP_003130884.1|	-	0.0078	15.1	0.0	0.011	14.5	0.0	1.2	1	0	0	1	1	1	1	NAD	synthase
QueC	PF06508.8	gi|257053051|ref|YP_003130884.1|	-	0.05	12.8	0.0	0.074	12.3	0.0	1.2	1	0	0	1	1	1	0	Queuosine	biosynthesis	protein	QueC
IU_nuc_hydro	PF01156.14	gi|257053051|ref|YP_003130884.1|	-	0.066	12.4	0.1	0.074	12.2	0.1	1.1	1	0	0	1	1	1	0	Inosine-uridine	preferring	nucleoside	hydrolase
Acetyltransf_3	PF13302.1	gi|257053052|ref|YP_003130885.1|	-	1.4e-24	86.8	0.1	2e-24	86.3	0.1	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.19	gi|257053052|ref|YP_003130885.1|	-	0.0003	20.7	0.0	0.0006	19.7	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
HTH_38	PF13936.1	gi|257053053|ref|YP_003130886.1|	-	0.052	13.1	0.8	0.1	12.1	0.5	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
CcdA	PF07362.7	gi|257053053|ref|YP_003130886.1|	-	0.13	12.1	0.1	0.23	11.3	0.1	1.4	1	0	0	1	1	1	0	Post-segregation	antitoxin	CcdA
CENP-B_N	PF04218.8	gi|257053053|ref|YP_003130886.1|	-	0.21	11.0	0.8	0.39	10.1	0.6	1.4	1	0	0	1	1	1	0	CENP-B	N-terminal	DNA-binding	domain
tRNA-synt_His	PF13393.1	gi|257053054|ref|YP_003130887.1|	-	1.8e-55	188.1	0.3	2.4e-55	187.8	0.2	1.1	1	0	0	1	1	1	1	Histidyl-tRNA	synthetase
tRNA-synt_2b	PF00587.20	gi|257053054|ref|YP_003130887.1|	-	6.2e-23	81.2	0.0	9.3e-23	80.6	0.0	1.2	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
HGTP_anticodon	PF03129.15	gi|257053054|ref|YP_003130887.1|	-	1.6e-13	50.3	0.1	3.2e-13	49.4	0.0	1.4	1	0	0	1	1	1	1	Anticodon	binding	domain
Flavodoxin_1	PF00258.20	gi|257053054|ref|YP_003130887.1|	-	0.051	13.5	0.9	0.16	11.9	0.0	2.2	3	0	0	3	3	3	0	Flavodoxin
Bax1-I	PF01027.15	gi|257053055|ref|YP_003130888.1|	-	0.0058	16.2	0.3	0.0058	16.2	0.2	1.4	2	0	0	2	2	2	1	Inhibitor	of	apoptosis-promoting	Bax1
DUF2231	PF09990.4	gi|257053055|ref|YP_003130888.1|	-	0.48	10.7	4.8	1.5	9.2	0.0	3.6	4	1	0	4	4	4	0	Predicted	membrane	protein	(DUF2231)
HAD_2	PF13419.1	gi|257053057|ref|YP_003130890.1|	-	2.6e-12	47.3	0.2	3.4e-12	46.9	0.2	1.2	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|257053057|ref|YP_003130890.1|	-	0.0002	21.0	0.0	0.00042	19.9	0.0	1.6	1	0	0	1	1	1	1	HAD-hyrolase-like
Hydrolase	PF00702.21	gi|257053057|ref|YP_003130890.1|	-	0.003	17.9	0.0	0.16	12.3	0.0	2.1	1	1	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
PQQ_3	PF13570.1	gi|257053058|ref|YP_003130891.1|	-	1.1e-77	254.4	51.5	9.3e-11	41.6	0.4	9.2	8	1	0	8	8	8	8	PQQ-like	domain
PQQ_2	PF13360.1	gi|257053058|ref|YP_003130891.1|	-	3.3e-60	203.5	15.6	6.2e-21	74.9	0.2	3.9	1	1	2	3	3	3	3	PQQ-like	domain
PQQ	PF01011.16	gi|257053058|ref|YP_003130891.1|	-	5.3e-56	183.5	18.7	3.6e-09	35.6	0.0	8.7	8	0	0	8	8	8	8	PQQ	enzyme	repeat
DUF2862	PF11061.3	gi|257053058|ref|YP_003130891.1|	-	0.0013	18.3	0.3	14	5.5	0.0	4.3	4	0	0	4	4	4	1	Protein	of	unknown	function	(DUF2862)
Glycos_transf_1	PF00534.15	gi|257053059|ref|YP_003130892.1|	-	1.4e-14	53.8	0.0	2.4e-14	53.1	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|257053059|ref|YP_003130892.1|	-	2.1e-11	44.1	0.0	4.1e-11	43.1	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.1	gi|257053059|ref|YP_003130892.1|	-	2.7e-07	30.4	0.0	1.8e-05	24.5	0.0	2.5	2	1	0	2	2	2	1	Glycosyltransferase	Family	4
Sulfatase	PF00884.18	gi|257053060|ref|YP_003130893.1|	-	0.00049	19.3	0.0	0.00066	18.9	0.0	1.2	1	0	0	1	1	1	1	Sulfatase
Aldo_ket_red	PF00248.16	gi|257053061|ref|YP_003130894.1|	-	5.2e-49	166.5	0.0	8.1e-49	165.9	0.0	1.3	1	0	0	1	1	1	1	Aldo/keto	reductase	family
GFO_IDH_MocA	PF01408.17	gi|257053061|ref|YP_003130894.1|	-	3.2e-17	63.1	0.2	1.4e-15	57.8	0.1	2.6	2	0	0	2	2	2	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
NAD_binding_3	PF03447.11	gi|257053061|ref|YP_003130894.1|	-	1.4e-05	25.4	1.2	3.8e-05	24.0	0.8	1.7	1	0	0	1	1	1	1	Homoserine	dehydrogenase,	NAD	binding	domain
GFO_IDH_MocA_C	PF02894.12	gi|257053061|ref|YP_003130894.1|	-	0.00098	18.8	0.0	0.0025	17.5	0.0	1.7	1	0	0	1	1	1	1	Oxidoreductase	family,	C-terminal	alpha/beta	domain
DUF4131	PF13567.1	gi|257053062|ref|YP_003130895.1|	-	6.5	6.1	8.8	6.4	6.1	5.3	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
CDP-OH_P_transf	PF01066.16	gi|257053063|ref|YP_003130896.1|	-	9.1e-12	45.1	3.9	1.5e-11	44.4	2.7	1.6	1	1	0	1	1	1	1	CDP-alcohol	phosphatidyltransferase
DUF3488	PF11992.3	gi|257053063|ref|YP_003130896.1|	-	0.56	8.7	4.8	0.093	11.3	0.3	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3488)
DUF457	PF04307.9	gi|257053064|ref|YP_003130897.1|	-	0.0016	17.8	8.7	0.0028	17.0	6.1	1.6	1	1	0	1	1	1	1	Predicted	membrane-bound	metal-dependent	hydrolase	(DUF457)
PAP2	PF01569.16	gi|257053065|ref|YP_003130898.1|	-	4.1e-16	58.8	6.9	4.1e-16	58.8	4.8	1.5	1	1	0	1	1	1	1	PAP2	superfamily
PAP2_3	PF14378.1	gi|257053065|ref|YP_003130898.1|	-	2.7e-06	27.0	8.4	6.9e-05	22.4	5.8	2.0	1	1	0	1	1	1	1	PAP2	superfamily
PAP2_C	PF14360.1	gi|257053065|ref|YP_003130898.1|	-	0.41	10.9	4.9	0.29	11.4	0.3	2.3	2	0	0	2	2	2	0	PAP2	superfamily	C-terminal
GGDN	PF05165.7	gi|257053066|ref|YP_003130899.1|	-	2.4e-87	292.0	0.0	3.1e-87	291.7	0.0	1.0	1	0	0	1	1	1	1	GGDN	family
ADH_zinc_N	PF00107.21	gi|257053067|ref|YP_003130900.1|	-	5.1e-12	45.4	0.0	9.3e-12	44.6	0.0	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.1	gi|257053067|ref|YP_003130900.1|	-	0.001	19.9	0.0	0.0028	18.5	0.0	1.7	1	1	0	1	1	1	1	Zinc-binding	dehydrogenase
ThiF	PF00899.16	gi|257053067|ref|YP_003130900.1|	-	0.054	13.3	0.4	0.11	12.3	0.3	1.4	1	0	0	1	1	1	0	ThiF	family
ADH_N	PF08240.7	gi|257053067|ref|YP_003130900.1|	-	0.092	12.5	0.0	0.27	11.0	0.0	1.8	2	0	0	2	2	2	0	Alcohol	dehydrogenase	GroES-like	domain
2-Hacid_dh_C	PF02826.14	gi|257053067|ref|YP_003130900.1|	-	0.12	11.5	0.0	0.18	10.9	0.0	1.2	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
PTPS	PF01242.14	gi|257053068|ref|YP_003130901.1|	-	6.7e-24	83.9	0.0	7.7e-24	83.7	0.0	1.1	1	0	0	1	1	1	1	6-pyruvoyl	tetrahydropterin	synthase
Methyltransf_31	PF13847.1	gi|257053069|ref|YP_003130902.1|	-	3.1e-08	33.3	0.0	7.1e-08	32.1	0.0	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|257053069|ref|YP_003130902.1|	-	7.7e-08	32.2	0.0	1.2e-07	31.6	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|257053069|ref|YP_003130902.1|	-	6.7e-07	29.8	0.0	1.4e-06	28.8	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|257053069|ref|YP_003130902.1|	-	2.7e-06	27.7	0.0	7.6e-06	26.3	0.0	1.8	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|257053069|ref|YP_003130902.1|	-	5.9e-05	23.3	0.0	0.00015	22.0	0.0	1.7	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|257053069|ref|YP_003130902.1|	-	0.00022	21.2	1.0	0.00088	19.2	0.7	2.0	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|257053069|ref|YP_003130902.1|	-	0.00031	21.1	0.0	0.0007	20.0	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
FmrO	PF07091.6	gi|257053069|ref|YP_003130902.1|	-	0.079	11.9	0.0	0.11	11.4	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	RNA	methyltransferase	(FmrO)
PseudoU_synth_1	PF01416.15	gi|257053070|ref|YP_003130903.1|	-	1.2e-18	67.4	0.0	2.3e-11	44.0	0.0	2.2	2	0	0	2	2	2	2	tRNA	pseudouridine	synthase
Ferritin	PF00210.19	gi|257053071|ref|YP_003130904.1|	-	3.3e-25	88.5	1.5	4.2e-25	88.1	1.0	1.1	1	0	0	1	1	1	1	Ferritin-like	domain
DUF2383	PF09537.5	gi|257053071|ref|YP_003130904.1|	-	0.0051	17.0	0.2	0.016	15.4	0.0	1.8	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF2383)
PNTB	PF02233.11	gi|257053073|ref|YP_003130906.1|	-	2.8e-153	511.0	13.1	3.2e-153	510.8	9.1	1.0	1	0	0	1	1	1	1	NAD(P)	transhydrogenase	beta	subunit
TPP_enzyme_M	PF00205.17	gi|257053073|ref|YP_003130906.1|	-	0.02	14.6	0.8	0.2	11.4	0.1	2.5	2	1	0	2	2	2	0	Thiamine	pyrophosphate	enzyme,	central	domain
DUF3814	PF12769.2	gi|257053074|ref|YP_003130907.1|	-	3.8e-31	107.0	7.6	4.2e-31	106.9	5.2	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3814)
DUF485	PF04341.7	gi|257053074|ref|YP_003130907.1|	-	0.068	12.8	8.0	0.37	10.5	0.7	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function,	DUF485
BofA	PF07441.6	gi|257053074|ref|YP_003130907.1|	-	0.28	11.2	8.4	0.15	12.0	2.2	2.1	2	0	0	2	2	2	0	SigmaK-factor	processing	regulatory	protein	BofA
AlaDh_PNT_C	PF01262.16	gi|257053075|ref|YP_003130908.1|	-	7.2e-49	165.5	2.1	1e-48	165.0	1.5	1.2	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
AlaDh_PNT_N	PF05222.10	gi|257053075|ref|YP_003130908.1|	-	5.3e-39	133.3	0.7	6.3e-38	129.8	0.0	2.3	2	0	0	2	2	2	1	Alanine	dehydrogenase/PNT,	N-terminal	domain
2-Hacid_dh_C	PF02826.14	gi|257053075|ref|YP_003130908.1|	-	6.1e-07	28.7	0.0	0.0022	17.1	0.0	2.3	1	1	1	2	2	2	2	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
HI0933_like	PF03486.9	gi|257053075|ref|YP_003130908.1|	-	0.00018	20.0	0.1	0.0067	14.9	0.0	2.5	3	0	0	3	3	3	1	HI0933-like	protein
NAD_binding_2	PF03446.10	gi|257053075|ref|YP_003130908.1|	-	0.0005	19.9	0.5	0.0024	17.7	0.4	2.1	1	1	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Pyr_redox_2	PF07992.9	gi|257053075|ref|YP_003130908.1|	-	0.00057	19.8	0.6	0.0012	18.8	0.3	1.6	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.13	gi|257053075|ref|YP_003130908.1|	-	0.0024	17.5	2.0	0.0046	16.6	1.4	1.4	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
GIDA	PF01134.17	gi|257053075|ref|YP_003130908.1|	-	0.008	15.0	0.2	0.012	14.4	0.1	1.2	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
TrkA_N	PF02254.13	gi|257053075|ref|YP_003130908.1|	-	0.0088	16.0	0.3	0.034	14.1	0.2	2.0	1	0	0	1	1	1	1	TrkA-N	domain
NAD_binding_8	PF13450.1	gi|257053075|ref|YP_003130908.1|	-	0.021	14.8	0.2	0.15	12.1	0.1	2.3	2	0	0	2	2	2	0	NAD(P)-binding	Rossmann-like	domain
Shikimate_DH	PF01488.15	gi|257053075|ref|YP_003130908.1|	-	0.043	13.9	0.2	3.8	7.6	0.0	2.5	2	0	0	2	2	2	0	Shikimate	/	quinate	5-dehydrogenase
ADH_zinc_N	PF00107.21	gi|257053075|ref|YP_003130908.1|	-	6.8	6.2	8.3	0.53	9.8	1.9	2.1	2	1	0	2	2	2	0	Zinc-binding	dehydrogenase
UPF0278	PF08745.6	gi|257053076|ref|YP_003130909.1|	-	2.9e-81	271.6	0.4	3.3e-81	271.4	0.3	1.0	1	0	0	1	1	1	1	UPF0278	family
PIN_3	PF13470.1	gi|257053076|ref|YP_003130909.1|	-	0.005	17.4	0.9	0.08	13.6	0.6	2.1	1	1	0	1	1	1	1	PIN	domain
eRF1_2	PF03464.10	gi|257053078|ref|YP_003130911.1|	-	2.5e-35	121.7	0.0	5.7e-35	120.5	0.0	1.6	1	0	0	1	1	1	1	eRF1	domain	2
eRF1_3	PF03465.10	gi|257053078|ref|YP_003130911.1|	-	1.8e-28	99.0	0.2	4.8e-28	97.6	0.2	1.8	1	0	0	1	1	1	1	eRF1	domain	3
eRF1_1	PF03463.10	gi|257053078|ref|YP_003130911.1|	-	4.9e-23	81.1	0.0	7.7e-23	80.5	0.0	1.2	1	0	0	1	1	1	1	eRF1	domain	1
CbiA	PF01656.18	gi|257053079|ref|YP_003130912.1|	-	3e-28	98.5	2.2	3.8e-28	98.2	1.5	1.1	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.1	gi|257053079|ref|YP_003130912.1|	-	2.9e-16	59.8	0.0	4.3e-16	59.2	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
MipZ	PF09140.6	gi|257053079|ref|YP_003130912.1|	-	5.1e-10	38.8	0.2	1.1e-09	37.8	0.1	1.5	1	1	0	1	1	1	1	ATPase	MipZ
YhjQ	PF06564.7	gi|257053079|ref|YP_003130912.1|	-	1.2e-06	28.0	0.1	1.9e-06	27.4	0.0	1.2	1	0	0	1	1	1	1	YhjQ	protein
ArsA_ATPase	PF02374.10	gi|257053079|ref|YP_003130912.1|	-	5.2e-06	25.7	3.6	1.1e-05	24.6	1.1	2.0	1	1	1	2	2	2	1	Anion-transporting	ATPase
Fer4_NifH	PF00142.13	gi|257053079|ref|YP_003130912.1|	-	2.2e-05	23.7	0.0	0.0078	15.4	0.0	2.1	2	0	0	2	2	2	2	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
ParA	PF10609.4	gi|257053079|ref|YP_003130912.1|	-	0.00015	21.5	0.1	0.00034	20.4	0.1	1.6	1	0	0	1	1	1	1	ParA/MinD	ATPase	like
SRP54	PF00448.17	gi|257053079|ref|YP_003130912.1|	-	0.00051	19.5	0.4	0.12	11.8	0.1	2.3	2	0	0	2	2	2	2	SRP54-type	protein,	GTPase	domain
AAA_26	PF13500.1	gi|257053079|ref|YP_003130912.1|	-	0.0019	17.8	2.4	0.031	13.8	1.7	2.5	1	1	0	1	1	1	1	AAA	domain
MobB	PF03205.9	gi|257053079|ref|YP_003130912.1|	-	0.0033	17.1	0.7	0.1	12.2	0.5	2.3	1	1	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_25	PF13481.1	gi|257053079|ref|YP_003130912.1|	-	0.018	14.4	3.5	0.026	13.9	1.0	2.1	2	1	0	2	2	2	0	AAA	domain
DUF1611	PF07755.6	gi|257053079|ref|YP_003130912.1|	-	0.036	12.7	0.6	0.58	8.7	0.2	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1611)
AAA_10	PF12846.2	gi|257053079|ref|YP_003130912.1|	-	0.053	12.9	0.2	0.14	11.5	0.1	1.4	1	1	0	1	1	1	0	AAA-like	domain
VirC1	PF07015.6	gi|257053079|ref|YP_003130912.1|	-	0.059	12.4	1.1	0.65	9.0	0.1	2.1	2	0	0	2	2	2	0	VirC1	protein
AAA_24	PF13479.1	gi|257053079|ref|YP_003130912.1|	-	0.075	12.5	0.2	0.13	11.7	0.1	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_17	PF13207.1	gi|257053079|ref|YP_003130912.1|	-	0.13	13.0	0.3	0.46	11.3	0.2	2.2	1	1	0	1	1	1	0	AAA	domain
ArgK	PF03308.11	gi|257053079|ref|YP_003130912.1|	-	0.25	10.0	4.5	2.2	6.9	0.6	2.1	2	0	0	2	2	2	0	ArgK	protein
tRNA-synt_1d	PF00750.14	gi|257053080|ref|YP_003130913.1|	-	5.2e-56	189.9	0.0	6.9e-56	189.5	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(R)
DALR_1	PF05746.10	gi|257053080|ref|YP_003130913.1|	-	4.3e-34	117.0	0.0	1.4e-33	115.4	0.0	1.9	1	0	0	1	1	1	1	DALR	anticodon	binding	domain
Arg_tRNA_synt_N	PF03485.11	gi|257053080|ref|YP_003130913.1|	-	3e-08	34.0	0.0	8e-08	32.7	0.0	1.7	1	0	0	1	1	1	1	Arginyl	tRNA	synthetase	N	terminal	domain
tRNA-synt_1f	PF01921.13	gi|257053080|ref|YP_003130913.1|	-	0.016	13.9	0.0	0.089	11.4	0.0	1.9	2	0	0	2	2	2	0	tRNA	synthetases	class	I	(K)
DUF3194	PF11419.3	gi|257053080|ref|YP_003130913.1|	-	0.057	13.6	0.3	1.2	9.3	0.1	2.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3194)
ADH_N	PF08240.7	gi|257053081|ref|YP_003130914.1|	-	2.6e-32	110.8	0.2	4.7e-32	109.9	0.2	1.4	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.21	gi|257053081|ref|YP_003130914.1|	-	4.9e-29	100.5	1.0	7.3e-29	99.9	0.7	1.2	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
NAD_binding_7	PF13241.1	gi|257053081|ref|YP_003130914.1|	-	0.0023	18.1	0.4	0.0045	17.2	0.3	1.4	1	0	0	1	1	1	1	Putative	NAD(P)-binding
TrkA_N	PF02254.13	gi|257053081|ref|YP_003130914.1|	-	0.0038	17.1	0.8	0.0078	16.2	0.5	1.6	1	1	0	1	1	1	1	TrkA-N	domain
Methyltransf_18	PF12847.2	gi|257053081|ref|YP_003130914.1|	-	0.0048	17.4	0.5	0.016	15.8	0.2	2.0	2	1	1	3	3	3	1	Methyltransferase	domain
2-Hacid_dh_C	PF02826.14	gi|257053081|ref|YP_003130914.1|	-	0.0099	15.0	0.1	0.017	14.2	0.1	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Saccharop_dh	PF03435.13	gi|257053081|ref|YP_003130914.1|	-	0.011	14.6	0.5	0.016	14.2	0.4	1.3	1	0	0	1	1	1	0	Saccharopine	dehydrogenase
Methyltransf_24	PF13578.1	gi|257053081|ref|YP_003130914.1|	-	0.019	15.7	0.2	0.042	14.6	0.1	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
NAD_binding_3	PF03447.11	gi|257053081|ref|YP_003130914.1|	-	0.021	15.2	1.7	0.042	14.2	1.2	1.5	1	0	0	1	1	1	0	Homoserine	dehydrogenase,	NAD	binding	domain
PrpR_N	PF06506.6	gi|257053081|ref|YP_003130914.1|	-	0.033	13.5	0.1	1.2	8.5	0.0	2.4	1	1	1	2	2	2	0	Propionate	catabolism	activator
F420_oxidored	PF03807.12	gi|257053081|ref|YP_003130914.1|	-	0.036	14.4	0.5	0.07	13.5	0.3	1.6	1	0	0	1	1	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
Methyltransf_26	PF13659.1	gi|257053081|ref|YP_003130914.1|	-	0.082	12.9	0.9	0.24	11.4	0.6	1.8	1	1	0	1	1	1	0	Methyltransferase	domain
UDPG_MGDP_dh_N	PF03721.9	gi|257053081|ref|YP_003130914.1|	-	0.11	11.9	0.5	0.21	10.9	0.3	1.6	1	1	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Shikimate_DH	PF01488.15	gi|257053081|ref|YP_003130914.1|	-	0.11	12.5	0.2	0.27	11.3	0.1	1.6	1	1	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
ThiF	PF00899.16	gi|257053081|ref|YP_003130914.1|	-	0.13	12.0	3.3	3.6	7.3	1.1	2.3	1	1	1	2	2	2	0	ThiF	family
3HCDH_N	PF02737.13	gi|257053081|ref|YP_003130914.1|	-	0.16	11.5	3.2	0.36	10.4	2.1	1.7	1	1	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
DUF433	PF04255.9	gi|257053082|ref|YP_003130915.1|	-	1.2e-16	59.7	0.1	1.5e-16	59.5	0.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF433)
Radical_SAM	PF04055.16	gi|257053084|ref|YP_003130917.1|	-	8e-20	71.6	0.1	1.8e-19	70.5	0.1	1.6	1	1	0	1	1	1	1	Radical	SAM	superfamily
Wyosine_form	PF08608.7	gi|257053084|ref|YP_003130917.1|	-	4.3e-16	58.7	0.0	9.3e-16	57.6	0.0	1.6	1	0	0	1	1	1	1	Wyosine	base	formation
HAD_2	PF13419.1	gi|257053084|ref|YP_003130917.1|	-	0.0001	22.5	0.2	0.0032	17.6	0.0	2.5	1	1	0	2	2	2	1	Haloacid	dehalogenase-like	hydrolase
Fer4_14	PF13394.1	gi|257053084|ref|YP_003130917.1|	-	0.0044	17.0	0.2	0.022	14.7	0.2	2.0	1	1	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.1	gi|257053084|ref|YP_003130917.1|	-	0.11	12.6	0.0	0.24	11.5	0.0	1.5	1	1	0	1	1	1	0	4Fe-4S	single	cluster	domain
Ribosomal_S6e	PF01092.14	gi|257053085|ref|YP_003130918.1|	-	0.032	13.8	0.0	0.033	13.8	0.0	1.0	1	0	0	1	1	1	0	Ribosomal	protein	S6e
CCT	PF06203.9	gi|257053085|ref|YP_003130918.1|	-	0.062	12.9	0.5	0.084	12.5	0.3	1.2	1	0	0	1	1	1	0	CCT	motif
CTP-dep_RFKase	PF01982.11	gi|257053086|ref|YP_003130919.1|	-	2.1e-40	137.0	0.0	3.2e-40	136.5	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF120
MarR_2	PF12802.2	gi|257053086|ref|YP_003130919.1|	-	0.00027	20.5	0.3	0.00058	19.4	0.2	1.5	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.17	gi|257053086|ref|YP_003130919.1|	-	0.00038	20.0	0.0	0.00068	19.2	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.1	gi|257053086|ref|YP_003130919.1|	-	0.00054	19.3	0.0	0.00094	18.5	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.2	gi|257053086|ref|YP_003130919.1|	-	0.00062	19.5	0.3	0.0015	18.2	0.2	1.6	1	1	0	1	1	1	1	Helix-turn-helix	domain
HTH_AsnC-type	PF13404.1	gi|257053086|ref|YP_003130919.1|	-	0.0022	17.5	0.6	0.0053	16.2	0.2	1.9	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.7	gi|257053086|ref|YP_003130919.1|	-	0.0075	15.8	0.1	0.013	15.1	0.1	1.4	1	0	0	1	1	1	1	HTH	domain
HTH_27	PF13463.1	gi|257053086|ref|YP_003130919.1|	-	0.017	15.4	0.2	0.032	14.5	0.2	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_34	PF13601.1	gi|257053086|ref|YP_003130919.1|	-	0.019	14.9	0.0	0.05	13.6	0.0	1.7	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
Fe_dep_repress	PF01325.14	gi|257053086|ref|YP_003130919.1|	-	0.13	12.2	0.2	0.33	10.9	0.0	1.7	2	0	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
AAA_assoc_C	PF09821.4	gi|257053086|ref|YP_003130919.1|	-	0.14	12.4	0.3	15	5.8	0.0	2.3	1	1	0	2	2	2	0	C-terminal	AAA-associated	domain
Aminotran_4	PF01063.14	gi|257053087|ref|YP_003130920.1|	-	1.6e-41	142.2	0.0	1.9e-41	142.0	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	IV
DUF502	PF04367.8	gi|257053088|ref|YP_003130921.1|	-	4.1e-19	68.3	0.4	7.5e-19	67.5	0.0	1.6	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF502)
Fig1	PF12351.3	gi|257053088|ref|YP_003130921.1|	-	0.016	15.1	0.9	0.019	14.8	0.6	1.1	1	0	0	1	1	1	0	Ca2+	regulator	and	membrane	fusion	protein	Fig1
CBS	PF00571.23	gi|257053089|ref|YP_003130922.1|	-	2.5e-29	100.7	6.4	3.9e-15	55.3	0.5	2.1	2	0	0	2	2	2	2	CBS	domain
H_kinase_N	PF12282.3	gi|257053089|ref|YP_003130922.1|	-	0.0016	18.0	0.1	0.73	9.4	0.0	2.3	2	0	0	2	2	2	2	Signal	transduction	histidine	kinase
PB1	PF00564.19	gi|257053089|ref|YP_003130922.1|	-	0.009	15.6	1.6	1.9	8.2	0.0	3.2	2	1	1	3	3	3	1	PB1	domain
EamA	PF00892.15	gi|257053090|ref|YP_003130923.1|	-	1.4e-32	112.3	25.1	7.2e-18	64.8	6.5	2.1	2	0	0	2	2	2	2	EamA-like	transporter	family
DUF914	PF06027.7	gi|257053090|ref|YP_003130923.1|	-	0.0043	15.9	2.4	0.0062	15.4	1.7	1.2	1	0	0	1	1	1	1	Eukaryotic	protein	of	unknown	function	(DUF914)
TPT	PF03151.11	gi|257053090|ref|YP_003130923.1|	-	0.0055	16.3	19.0	0.033	13.8	5.5	2.8	2	1	0	2	2	2	2	Triose-phosphate	Transporter	family
EmrE	PF13536.1	gi|257053090|ref|YP_003130923.1|	-	0.0063	16.6	5.2	0.0063	16.6	3.6	3.6	2	2	2	4	4	4	2	Multidrug	resistance	efflux	transporter
Fe_dep_repress	PF01325.14	gi|257053092|ref|YP_003130925.1|	-	1.6e-10	40.7	0.0	3e-10	39.8	0.0	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR_2	PF12802.2	gi|257053092|ref|YP_003130925.1|	-	9.5e-05	21.9	0.0	0.00023	20.7	0.0	1.6	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.17	gi|257053092|ref|YP_003130925.1|	-	0.0021	17.6	0.0	0.0043	16.7	0.0	1.5	1	0	0	1	1	1	1	MarR	family
Fe_dep_repr_C	PF02742.10	gi|257053092|ref|YP_003130925.1|	-	0.0025	17.4	0.1	0.0054	16.3	0.1	1.6	2	0	0	2	2	2	1	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
HTH_11	PF08279.7	gi|257053092|ref|YP_003130925.1|	-	0.0055	16.3	0.0	0.012	15.1	0.0	1.6	1	0	0	1	1	1	1	HTH	domain
TrmB	PF01978.14	gi|257053092|ref|YP_003130925.1|	-	0.024	14.3	0.0	0.043	13.5	0.0	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
DUF3606	PF12244.3	gi|257053092|ref|YP_003130925.1|	-	0.03	13.9	0.0	0.053	13.1	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3606)
LZ_Tnp_IS481	PF13011.1	gi|257053092|ref|YP_003130925.1|	-	0.052	13.8	0.0	0.16	12.2	0.0	1.8	2	1	0	2	2	2	0	leucine-zipper	of	insertion	element	IS481
HTH_Crp_2	PF13545.1	gi|257053092|ref|YP_003130925.1|	-	0.11	12.2	0.0	0.24	11.2	0.0	1.6	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_27	PF13463.1	gi|257053092|ref|YP_003130925.1|	-	0.13	12.5	0.1	0.32	11.3	0.1	1.8	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
UPF0016	PF01169.14	gi|257053093|ref|YP_003130926.1|	-	2e-23	82.3	15.6	7e-15	54.9	2.4	2.6	2	0	0	2	2	2	2	Uncharacterized	protein	family	UPF0016
DUF917	PF06032.7	gi|257053093|ref|YP_003130926.1|	-	0.02	13.4	0.1	0.029	12.9	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF917)
CD24	PF14984.1	gi|257053093|ref|YP_003130926.1|	-	0.36	10.6	1.7	1.4	8.8	0.2	2.3	1	1	1	2	2	2	0	CD24	protein
Fe_dep_repr_C	PF02742.10	gi|257053094|ref|YP_003130927.1|	-	4.3e-30	103.2	2.9	1.1e-29	101.9	2.0	1.7	1	0	0	1	1	1	1	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
Fe_dep_repress	PF01325.14	gi|257053094|ref|YP_003130927.1|	-	8.3e-18	64.0	0.3	1.9e-17	62.9	0.2	1.6	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
FeoA	PF04023.9	gi|257053094|ref|YP_003130927.1|	-	1.3e-11	44.3	0.1	2.4e-11	43.4	0.0	1.5	1	0	0	1	1	1	1	FeoA	domain
MarR	PF01047.17	gi|257053094|ref|YP_003130927.1|	-	2.4e-07	30.3	0.0	4.4e-07	29.5	0.0	1.4	1	0	0	1	1	1	1	MarR	family
MarR_2	PF12802.2	gi|257053094|ref|YP_003130927.1|	-	4.3e-06	26.3	0.2	1.9e-05	24.2	0.0	2.2	2	1	0	2	2	2	1	MarR	family
HTH_12	PF08461.5	gi|257053094|ref|YP_003130927.1|	-	0.00023	20.8	0.2	0.00092	18.8	0.1	2.1	1	1	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
HTH_Crp_2	PF13545.1	gi|257053094|ref|YP_003130927.1|	-	0.00026	20.7	0.0	0.00097	18.8	0.0	1.9	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
HTH_27	PF13463.1	gi|257053094|ref|YP_003130927.1|	-	0.00028	21.1	0.3	0.0015	18.7	0.1	2.3	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_IclR	PF09339.5	gi|257053094|ref|YP_003130927.1|	-	0.00036	20.0	0.0	0.00088	18.8	0.0	1.7	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_20	PF12840.2	gi|257053094|ref|YP_003130927.1|	-	0.00056	19.6	1.1	0.0012	18.5	0.0	2.2	3	0	0	3	3	3	1	Helix-turn-helix	domain
Rrf2	PF02082.15	gi|257053094|ref|YP_003130927.1|	-	0.0016	18.5	0.2	0.0043	17.1	0.0	1.8	2	0	0	2	2	1	1	Transcriptional	regulator
TrmB	PF01978.14	gi|257053094|ref|YP_003130927.1|	-	0.0027	17.3	0.0	0.013	15.2	0.0	2.0	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
GntR	PF00392.16	gi|257053094|ref|YP_003130927.1|	-	0.0034	16.7	0.0	0.0086	15.4	0.0	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_1	PF00126.22	gi|257053094|ref|YP_003130927.1|	-	0.0064	16.2	0.1	0.018	14.7	0.0	1.8	1	0	0	1	1	1	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
DUF2250	PF10007.4	gi|257053094|ref|YP_003130927.1|	-	0.009	15.9	0.1	0.018	14.9	0.1	1.5	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_45	PF14947.1	gi|257053094|ref|YP_003130927.1|	-	0.011	15.5	0.0	0.027	14.2	0.0	1.7	2	0	0	2	2	2	0	Winged	helix-turn-helix
HTH_24	PF13412.1	gi|257053094|ref|YP_003130927.1|	-	0.012	15.0	0.0	0.023	14.0	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
FaeA	PF04703.7	gi|257053094|ref|YP_003130927.1|	-	0.015	15.3	0.0	0.028	14.5	0.0	1.4	1	0	0	1	1	1	0	FaeA-like	protein
Crp	PF00325.15	gi|257053094|ref|YP_003130927.1|	-	0.017	14.6	0.1	0.05	13.0	0.0	1.9	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	crp	family
HTH_13	PF11972.3	gi|257053094|ref|YP_003130927.1|	-	0.13	12.1	0.0	0.25	11.1	0.0	1.4	1	0	0	1	1	1	0	HTH	DNA	binding	domain
DMRL_synthase	PF00885.14	gi|257053096|ref|YP_003130929.1|	-	5.7e-61	204.4	0.1	6.3e-61	204.2	0.0	1.0	1	0	0	1	1	1	1	6,7-dimethyl-8-ribityllumazine	synthase
DHBP_synthase	PF00926.14	gi|257053097|ref|YP_003130930.1|	-	1e-77	259.7	0.1	1.6e-77	259.1	0.1	1.3	1	0	0	1	1	1	1	3,4-dihydroxy-2-butanone	4-phosphate	synthase
GTP_cyclohydro2	PF00925.15	gi|257053097|ref|YP_003130930.1|	-	1.2e-61	206.8	0.0	5.4e-61	204.7	0.0	1.9	2	0	0	2	2	2	1	GTP	cyclohydrolase	II
PucR	PF07905.6	gi|257053097|ref|YP_003130930.1|	-	0.1	12.2	0.0	0.19	11.2	0.0	1.4	1	0	0	1	1	1	0	Purine	catabolism	regulatory	protein-like	family
Lum_binding	PF00677.12	gi|257053098|ref|YP_003130931.1|	-	2.3e-41	139.5	0.2	4.5e-20	71.3	0.0	2.1	2	0	0	2	2	2	2	Lumazine	binding	domain
FCD	PF07729.7	gi|257053101|ref|YP_003130934.1|	-	0.067	13.5	0.2	0.17	12.1	0.1	1.7	1	0	0	1	1	1	0	FCD	domain
HEAT_2	PF13646.1	gi|257053104|ref|YP_003130937.1|	-	0.00061	20.0	1.3	0.0021	18.2	0.4	2.3	2	1	1	3	3	3	1	HEAT	repeats
AAA_5	PF07728.9	gi|257053106|ref|YP_003130939.1|	-	0.18	11.5	1.0	19	4.9	0.0	3.7	2	1	1	4	4	4	0	AAA	domain	(dynein-related	subfamily)
MerR-DNA-bind	PF09278.6	gi|257053106|ref|YP_003130939.1|	-	0.43	10.9	0.1	0.43	10.9	0.1	2.3	3	0	0	3	3	3	0	MerR,	DNA	binding
PQQ	PF01011.16	gi|257053107|ref|YP_003130940.1|	-	0.12	12.0	0.0	0.54	9.8	0.0	2.0	2	1	0	2	2	2	0	PQQ	enzyme	repeat
CBM_48	PF02922.13	gi|257053107|ref|YP_003130940.1|	-	0.13	12.3	0.2	0.57	10.2	0.1	2.0	1	1	0	1	1	1	0	Carbohydrate-binding	module	48	(Isoamylase	N-terminal	domain)
MarR_2	PF12802.2	gi|257053108|ref|YP_003130941.1|	-	1.4e-13	50.3	1.4	1.1e-06	28.1	0.6	2.5	2	0	0	2	2	2	2	MarR	family
TrmB	PF01978.14	gi|257053108|ref|YP_003130941.1|	-	2.6e-08	33.4	0.0	0.00071	19.2	0.0	3.2	4	0	0	4	4	4	2	Sugar-specific	transcriptional	regulator	TrmB
Rrf2	PF02082.15	gi|257053108|ref|YP_003130941.1|	-	7.6e-08	32.3	0.0	0.0033	17.4	0.0	2.6	2	0	0	2	2	2	2	Transcriptional	regulator
MarR	PF01047.17	gi|257053108|ref|YP_003130941.1|	-	5.1e-07	29.2	0.0	0.01	15.5	0.0	2.6	2	0	0	2	2	2	2	MarR	family
HTH_29	PF13551.1	gi|257053108|ref|YP_003130941.1|	-	1.6e-06	28.2	0.3	0.02	15.0	0.0	2.4	1	1	1	2	2	2	2	Winged	helix-turn	helix
HTH_24	PF13412.1	gi|257053108|ref|YP_003130941.1|	-	5.3e-06	25.7	0.0	0.1	12.0	0.0	2.8	3	0	0	3	3	3	2	Winged	helix-turn-helix	DNA-binding
HTH_27	PF13463.1	gi|257053108|ref|YP_003130941.1|	-	7.5e-06	26.1	1.5	0.004	17.4	0.1	2.7	3	0	0	3	3	2	2	Winged	helix	DNA-binding	domain
HTH_20	PF12840.2	gi|257053108|ref|YP_003130941.1|	-	4.3e-05	23.2	0.1	0.1	12.4	0.1	2.5	2	0	0	2	2	2	2	Helix-turn-helix	domain
HTH_Crp_2	PF13545.1	gi|257053108|ref|YP_003130941.1|	-	6.1e-05	22.7	0.0	0.051	13.3	0.0	2.6	2	0	0	2	2	2	2	Crp-like	helix-turn-helix	domain
HTH_23	PF13384.1	gi|257053108|ref|YP_003130941.1|	-	7.4e-05	22.2	0.1	0.041	13.5	0.0	2.5	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_IclR	PF09339.5	gi|257053108|ref|YP_003130941.1|	-	7.8e-05	22.1	0.0	0.17	11.4	0.0	2.7	2	0	0	2	2	2	2	IclR	helix-turn-helix	domain
Crp	PF00325.15	gi|257053108|ref|YP_003130941.1|	-	0.00026	20.3	0.5	0.0093	15.4	0.3	2.5	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	crp	family
HTH_38	PF13936.1	gi|257053108|ref|YP_003130941.1|	-	0.00032	20.1	0.0	0.34	10.4	0.0	2.5	2	0	0	2	2	2	2	Helix-turn-helix	domain
GPP34	PF05719.6	gi|257053108|ref|YP_003130941.1|	-	0.0025	17.9	2.1	0.0029	17.7	0.2	1.8	2	0	0	2	2	2	1	Golgi	phosphoprotein	3	(GPP34)
GntR	PF00392.16	gi|257053108|ref|YP_003130941.1|	-	0.01	15.2	0.0	6.6	6.2	0.0	2.6	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
HTH_28	PF13518.1	gi|257053108|ref|YP_003130941.1|	-	0.011	15.6	0.1	0.71	9.9	0.0	2.6	2	0	0	2	2	2	0	Helix-turn-helix	domain
LZ_Tnp_IS481	PF13011.1	gi|257053108|ref|YP_003130941.1|	-	0.039	14.2	0.1	0.084	13.2	0.0	1.6	1	0	0	1	1	1	0	leucine-zipper	of	insertion	element	IS481
RPA_C	PF08784.6	gi|257053108|ref|YP_003130941.1|	-	0.049	14.0	0.0	0.11	12.9	0.0	1.6	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
HTH_5	PF01022.15	gi|257053108|ref|YP_003130941.1|	-	0.054	13.1	0.0	14	5.4	0.0	2.8	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
HTH_41	PF14502.1	gi|257053108|ref|YP_003130941.1|	-	0.058	13.0	0.0	0.41	10.3	0.0	2.3	3	0	0	3	3	3	0	Helix-turn-helix	domain
Penicillinase_R	PF03965.11	gi|257053108|ref|YP_003130941.1|	-	0.13	12.3	0.0	3	7.9	0.0	2.4	2	0	0	2	2	2	0	Penicillinase	repressor
Aldo_ket_red	PF00248.16	gi|257053109|ref|YP_003130942.1|	-	2.2e-60	203.9	0.0	2.6e-60	203.6	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
DUF393	PF04134.7	gi|257053110|ref|YP_003130943.1|	-	5.5e-13	50.0	0.0	6.1e-13	49.8	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF393
DUF2142	PF09913.4	gi|257053111|ref|YP_003130944.1|	-	0.49	9.0	3.5	0.54	8.8	2.4	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2142)
DUF606	PF04657.8	gi|257053111|ref|YP_003130944.1|	-	0.49	10.4	7.5	0.55	10.3	5.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF606
SecE	PF00584.15	gi|257053111|ref|YP_003130944.1|	-	1.3	8.6	6.0	0.61	9.7	0.3	2.1	2	0	0	2	2	2	0	SecE/Sec61-gamma	subunits	of	protein	translocation	complex
DUF1761	PF08570.5	gi|257053112|ref|YP_003130945.1|	-	0.34	10.9	6.5	0.41	10.6	4.5	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1761)
DUF3147	PF11345.3	gi|257053112|ref|YP_003130945.1|	-	0.64	10.0	8.8	0.15	12.1	3.4	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3147)
Tic20	PF09685.5	gi|257053112|ref|YP_003130945.1|	-	1.8	8.5	8.9	2.7	8.0	6.2	1.3	1	0	0	1	1	1	0	Tic20-like	protein
DUF21	PF01595.15	gi|257053112|ref|YP_003130945.1|	-	5.8	6.1	9.9	15	4.8	6.8	1.7	1	1	0	1	1	1	0	Domain	of	unknown	function	DUF21
GHMP_kinases_N	PF00288.21	gi|257053113|ref|YP_003130946.1|	-	2e-15	56.6	0.8	4.4e-15	55.4	0.5	1.6	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.8	gi|257053113|ref|YP_003130946.1|	-	2.7e-14	53.1	1.9	2.3e-13	50.1	0.3	2.4	2	0	0	2	2	2	1	GHMP	kinases	C	terminal
GalKase_gal_bdg	PF10509.4	gi|257053113|ref|YP_003130946.1|	-	0.00079	18.6	0.0	0.0017	17.6	0.0	1.6	1	0	0	1	1	1	1	Galactokinase	galactose-binding	signature
AA_kinase	PF00696.23	gi|257053114|ref|YP_003130947.1|	-	7.9e-33	113.9	4.3	9.2e-33	113.7	3.0	1.0	1	0	0	1	1	1	1	Amino	acid	kinase	family
PFK	PF00365.15	gi|257053114|ref|YP_003130947.1|	-	0.012	14.6	0.1	0.018	13.9	0.1	1.3	1	0	0	1	1	1	0	Phosphofructokinase
RuBisCO_large	PF00016.15	gi|257053114|ref|YP_003130947.1|	-	0.48	9.2	2.9	0.71	8.6	0.8	1.9	2	0	0	2	2	2	0	Ribulose	bisphosphate	carboxylase	large	chain,	catalytic	domain
Lactamase_B	PF00753.22	gi|257053116|ref|YP_003130949.1|	-	7.6e-12	45.2	2.5	1.7e-11	44.1	1.8	1.7	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.2	gi|257053116|ref|YP_003130949.1|	-	2.2e-06	27.3	0.5	1.1e-05	25.1	0.2	2.0	2	0	0	2	2	2	1	Beta-lactamase	superfamily	domain
RMMBL	PF07521.7	gi|257053116|ref|YP_003130949.1|	-	1.2e-05	24.9	0.9	2.9e-05	23.7	0.1	2.0	2	0	0	2	2	2	1	RNA-metabolising	metallo-beta-lactamase
DegT_DnrJ_EryC1	PF01041.12	gi|257053116|ref|YP_003130949.1|	-	0.021	13.8	0.2	3.7	6.4	0.0	2.2	2	0	0	2	2	2	0	DegT/DnrJ/EryC1/StrS	aminotransferase	family
polyprenyl_synt	PF00348.12	gi|257053117|ref|YP_003130950.1|	-	6.4e-58	195.6	0.1	8.8e-58	195.1	0.1	1.1	1	0	0	1	1	1	1	Polyprenyl	synthetase
Pkinase	PF00069.20	gi|257053118|ref|YP_003130951.1|	-	3.4e-06	26.3	0.0	5.5e-06	25.7	0.0	1.3	1	0	0	1	1	1	1	Protein	kinase	domain
Pyridox_oxidase	PF01243.15	gi|257053118|ref|YP_003130951.1|	-	0.0015	18.5	0.0	0.0033	17.4	0.0	1.6	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Lipoprotein_2	PF00921.12	gi|257053118|ref|YP_003130951.1|	-	0.032	14.2	0.2	0.068	13.1	0.1	1.6	2	0	0	2	2	2	0	Borrelia	lipoprotein
Tubulin_2	PF13809.1	gi|257053119|ref|YP_003130952.1|	-	3.4e-13	49.2	0.6	1.5e-12	47.1	0.4	2.1	1	1	0	1	1	1	1	Tubulin	like
Tubulin	PF00091.20	gi|257053119|ref|YP_003130952.1|	-	5.8e-08	32.8	0.0	3.1e-07	30.4	0.0	2.3	1	0	0	1	1	1	1	Tubulin/FtsZ	family,	GTPase	domain
Baculo_PEP_C	PF04513.7	gi|257053119|ref|YP_003130952.1|	-	0.014	15.2	19.7	0.74	9.6	0.4	6.1	6	1	0	6	6	6	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
COG2	PF06148.6	gi|257053119|ref|YP_003130952.1|	-	0.043	13.6	0.3	0.043	13.6	0.2	5.2	5	2	1	6	6	6	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Carbpep_Y_N	PF05388.6	gi|257053119|ref|YP_003130952.1|	-	0.17	12.0	1.7	0.78	9.9	0.0	3.0	2	1	1	3	3	3	0	Carboxypeptidase	Y	pro-peptide
DUF651	PF04895.7	gi|257053119|ref|YP_003130952.1|	-	0.74	9.4	4.2	0.79	9.3	0.1	3.3	3	0	0	3	3	3	0	Archaeal	protein	of	unknown	function	(DUF651)
Phe_tRNA-synt_N	PF02912.13	gi|257053119|ref|YP_003130952.1|	-	8.2	6.2	10.0	2.5	7.8	0.3	4.0	3	0	0	3	3	3	0	Aminoacyl	tRNA	synthetase	class	II,	N-terminal	domain
PP-binding_2	PF14573.1	gi|257053120|ref|YP_003130953.1|	-	0.032	14.2	0.1	0.067	13.2	0.1	1.5	1	0	0	1	1	1	0	Acyl-carrier
DUF3353	PF11833.3	gi|257053120|ref|YP_003130953.1|	-	3.9	6.8	9.9	1.5	8.2	3.3	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3353)
Pkinase	PF00069.20	gi|257053122|ref|YP_003130955.1|	-	2.5e-08	33.4	0.0	3.8e-08	32.7	0.0	1.2	1	0	0	1	1	1	1	Protein	kinase	domain
FimP	PF09766.4	gi|257053122|ref|YP_003130955.1|	-	0.99	8.4	2.8	6.3	5.7	0.1	2.1	2	0	0	2	2	2	0	Fms-interacting	protein
PQQ_2	PF13360.1	gi|257053123|ref|YP_003130956.1|	-	2.6e-33	115.4	21.8	9.6e-27	93.9	9.6	3.1	1	1	2	3	3	3	3	PQQ-like	domain
PQQ_3	PF13570.1	gi|257053123|ref|YP_003130956.1|	-	9.8e-32	108.3	27.2	7e-06	26.1	0.5	8.5	7	1	1	8	8	8	6	PQQ-like	domain
PQQ	PF01011.16	gi|257053123|ref|YP_003130956.1|	-	1.6e-17	62.0	7.5	2e-06	27.0	0.2	4.9	4	0	0	4	4	4	4	PQQ	enzyme	repeat
Pkinase	PF00069.20	gi|257053123|ref|YP_003130956.1|	-	3.4e-05	23.1	0.0	5.6e-05	22.4	0.0	1.3	1	0	0	1	1	1	1	Protein	kinase	domain
Pkinase_Tyr	PF07714.12	gi|257053123|ref|YP_003130956.1|	-	0.00011	21.3	0.0	0.00017	20.7	0.0	1.2	1	0	0	1	1	1	1	Protein	tyrosine	kinase
Usp	PF00582.21	gi|257053124|ref|YP_003130957.1|	-	7.7e-18	65.0	0.0	9.1e-18	64.8	0.0	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
GWT1	PF06423.7	gi|257053124|ref|YP_003130957.1|	-	0.065	13.3	0.0	0.092	12.8	0.0	1.2	1	0	0	1	1	1	0	GWT1
FlaC_arch	PF05377.6	gi|257053126|ref|YP_003130959.1|	-	0.00012	21.8	13.1	0.0084	15.9	1.3	5.0	5	2	1	6	6	6	1	Flagella	accessory	protein	C	(FlaC)
Flg_hook	PF02120.11	gi|257053126|ref|YP_003130959.1|	-	0.0058	16.2	3.2	1.9	8.1	0.1	3.8	3	1	0	3	3	3	1	Flagellar	hook-length	control	protein	FliK
Atg14	PF10186.4	gi|257053126|ref|YP_003130959.1|	-	0.022	13.7	16.4	0.13	11.1	4.5	3.1	2	2	0	2	2	2	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
Effector_1	PF04518.7	gi|257053126|ref|YP_003130959.1|	-	0.097	11.6	2.1	0.22	10.4	0.0	2.4	3	0	0	3	3	3	0	Effector	from	type	III	secretion	system
TMF_TATA_bd	PF12325.3	gi|257053126|ref|YP_003130959.1|	-	0.2	11.4	33.2	1.7	8.3	0.1	6.3	3	1	1	5	5	5	0	TATA	element	modulatory	factor	1	TATA	binding
Spc7	PF08317.6	gi|257053126|ref|YP_003130959.1|	-	0.47	9.0	15.5	0.38	9.3	0.6	3.5	3	1	2	5	5	5	0	Spc7	kinetochore	protein
Reo_sigmaC	PF04582.7	gi|257053126|ref|YP_003130959.1|	-	0.52	9.4	6.3	8.2	5.5	0.5	3.1	1	1	3	4	4	4	0	Reovirus	sigma	C	capsid	protein
AAA_13	PF13166.1	gi|257053126|ref|YP_003130959.1|	-	0.81	8.0	9.1	0.6	8.4	2.6	2.4	1	1	2	3	3	3	0	AAA	domain
DUF479	PF04336.7	gi|257053126|ref|YP_003130959.1|	-	0.85	9.7	3.1	3.5	7.7	0.0	3.3	3	1	1	4	4	4	0	Protein	of	unknown	function,	DUF479
DivIC	PF04977.10	gi|257053126|ref|YP_003130959.1|	-	1.1	8.7	31.4	2.1	7.8	0.1	6.7	6	1	1	7	7	7	0	Septum	formation	initiator
Laminin_II	PF06009.7	gi|257053126|ref|YP_003130959.1|	-	1.3	8.7	12.7	0.55	9.9	0.1	4.4	4	2	1	5	5	5	0	Laminin	Domain	II
DUF4047	PF13256.1	gi|257053126|ref|YP_003130959.1|	-	2	8.3	5.3	17	5.4	0.0	3.3	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4047)
PEARLI-4	PF05278.7	gi|257053126|ref|YP_003130959.1|	-	3.3	7.0	14.6	4.9	6.4	0.1	4.1	3	1	1	4	4	4	0	Arabidopsis	phospholipase-like	protein	(PEARLI	4)
NPV_P10	PF05531.7	gi|257053126|ref|YP_003130959.1|	-	3.5	7.9	8.9	1.1	9.5	0.2	4.1	5	1	0	5	5	4	0	Nucleopolyhedrovirus	P10	protein
CorA	PF01544.13	gi|257053126|ref|YP_003130959.1|	-	3.6	6.5	16.5	0.61	9.0	2.9	2.7	2	1	1	3	3	3	0	CorA-like	Mg2+	transporter	protein
Flagellin_C	PF00700.16	gi|257053126|ref|YP_003130959.1|	-	3.7	7.7	10.7	3.6	7.8	0.1	4.4	5	0	0	5	5	5	0	Bacterial	flagellin	C-terminal	helical	region
Pentapeptide_3	PF13576.1	gi|257053127|ref|YP_003130960.1|	-	1.4e-50	168.8	133.0	4.4e-09	36.0	3.5	10.8	5	1	9	14	14	14	11	Pentapeptide	repeats	(9	copies)
Pentapeptide_4	PF13599.1	gi|257053127|ref|YP_003130960.1|	-	1.5e-06	27.9	39.2	0.55	10.0	8.8	7.8	3	1	2	5	5	5	1	Pentapeptide	repeats	(9	copies)
Ion_trans_2	PF07885.11	gi|257053127|ref|YP_003130960.1|	-	1.9e-05	24.2	1.4	5.1e-05	22.8	1.0	1.7	1	0	0	1	1	1	1	Ion	channel
Pup_ligase	PF03136.10	gi|257053127|ref|YP_003130960.1|	-	0.11	11.0	1.5	0.14	10.7	0.1	1.7	2	0	0	2	2	2	0	Pup-ligase	protein
WRC	PF08879.5	gi|257053127|ref|YP_003130960.1|	-	0.2	11.3	2.9	0.17	11.5	0.5	1.9	2	0	0	2	2	2	0	WRC
FaeA	PF04703.7	gi|257053128|ref|YP_003130961.1|	-	0.079	13.1	0.2	1.1	9.4	0.0	2.3	1	1	1	2	2	2	0	FaeA-like	protein
HTH_28	PF13518.1	gi|257053128|ref|YP_003130961.1|	-	1.1	9.3	3.5	4	7.5	0.1	2.6	2	1	0	2	2	2	0	Helix-turn-helix	domain
DUF399	PF04187.8	gi|257053129|ref|YP_003130962.1|	-	0.0017	17.8	0.5	0.13	11.7	0.0	2.2	2	0	0	2	2	2	2	Protein	of	unknown	function,	DUF399
UbiA	PF01040.13	gi|257053129|ref|YP_003130962.1|	-	0.002	17.3	0.5	0.0033	16.7	0.3	1.2	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
IncA	PF04156.9	gi|257053129|ref|YP_003130962.1|	-	0.015	14.9	0.7	0.015	14.9	0.5	1.6	2	0	0	2	2	2	0	IncA	protein
TraB	PF01963.12	gi|257053129|ref|YP_003130962.1|	-	0.063	12.7	0.1	0.45	9.9	0.0	2.1	2	0	0	2	2	2	0	TraB	family
Spore_YtfJ	PF09579.5	gi|257053131|ref|YP_003130964.1|	-	8.2e-08	31.9	12.0	2.8e-07	30.2	8.2	1.9	1	1	0	1	1	1	1	Sporulation	protein	YtfJ	(Spore_YtfJ)
eIF-4B	PF06273.6	gi|257053131|ref|YP_003130964.1|	-	0.29	9.8	4.1	0.3	9.7	2.8	1.1	1	0	0	1	1	1	0	Plant	specific	eukaryotic	initiation	factor	4B
Beta_helix	PF13229.1	gi|257053134|ref|YP_003130967.1|	-	0.013	15.2	4.6	0.14	11.8	2.8	2.2	1	1	1	2	2	2	0	Right	handed	beta	helix	region
MarR_2	PF12802.2	gi|257053135|ref|YP_003130968.1|	-	1.4e-07	31.0	0.8	1.2e-06	28.0	0.1	2.4	2	0	0	2	2	2	1	MarR	family
HTH_27	PF13463.1	gi|257053135|ref|YP_003130968.1|	-	4e-06	27.0	1.4	0.0018	18.5	0.0	3.1	3	0	0	3	3	3	2	Winged	helix	DNA-binding	domain
MarR	PF01047.17	gi|257053135|ref|YP_003130968.1|	-	8.8e-05	22.1	0.0	0.00018	21.1	0.0	1.6	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.2	gi|257053135|ref|YP_003130968.1|	-	0.0059	16.3	0.0	0.024	14.4	0.0	2.1	2	0	0	2	2	2	1	Helix-turn-helix	domain
Penicillinase_R	PF03965.11	gi|257053135|ref|YP_003130968.1|	-	0.067	13.2	0.0	0.13	12.3	0.0	1.4	1	0	0	1	1	1	0	Penicillinase	repressor
TrmB	PF01978.14	gi|257053135|ref|YP_003130968.1|	-	0.098	12.3	0.0	0.53	10.0	0.0	2.2	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
DUF2722	PF10846.3	gi|257053135|ref|YP_003130968.1|	-	5.6	5.8	8.1	0.12	11.4	0.5	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2722)
RHH_1	PF01402.16	gi|257053136|ref|YP_003130969.1|	-	3.3e-06	26.7	0.0	4.3e-06	26.3	0.0	1.1	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
HTH_AsnC-type	PF13404.1	gi|257053136|ref|YP_003130969.1|	-	0.0055	16.2	0.0	0.0055	16.2	0.0	1.6	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|257053136|ref|YP_003130969.1|	-	0.06	12.9	0.0	0.092	12.3	0.0	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
IF2_N	PF04760.10	gi|257053136|ref|YP_003130969.1|	-	0.086	12.5	0.0	0.11	12.1	0.0	1.2	1	0	0	1	1	1	0	Translation	initiation	factor	IF-2,	N-terminal	region
DUF2802	PF10975.3	gi|257053136|ref|YP_003130969.1|	-	0.11	12.2	0.1	0.44	10.3	0.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2802)
RHH_1	PF01402.16	gi|257053137|ref|YP_003130970.1|	-	7.9e-05	22.3	1.0	0.0001	22.0	0.7	1.2	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
tRNA-synt_1c	PF00749.16	gi|257053138|ref|YP_003130971.1|	-	2.4e-55	187.4	0.0	2.9e-55	187.1	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(E	and	Q),	catalytic	domain
tRNA-synt_1c_C	PF03950.13	gi|257053138|ref|YP_003130971.1|	-	5.4e-18	65.2	0.0	1.7e-17	63.6	0.0	1.8	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(E	and	Q),	anti-codon	binding	domain
Meth_synt_1	PF08267.7	gi|257053138|ref|YP_003130971.1|	-	0.043	13.0	0.0	0.069	12.4	0.0	1.2	1	0	0	1	1	1	0	Cobalamin-independent	synthase,	N-terminal	domain
tRNA-synt_1d	PF00750.14	gi|257053138|ref|YP_003130971.1|	-	0.076	11.8	0.0	0.12	11.1	0.0	1.2	1	0	0	1	1	1	0	tRNA	synthetases	class	I	(R)
UbiA	PF01040.13	gi|257053139|ref|YP_003130972.1|	-	0.06	12.5	1.8	0.34	10.1	0.5	2.0	2	0	0	2	2	2	0	UbiA	prenyltransferase	family
DUF872	PF05915.7	gi|257053139|ref|YP_003130972.1|	-	0.11	12.3	0.0	0.82	9.5	0.0	2.1	2	0	0	2	2	2	0	Eukaryotic	protein	of	unknown	function	(DUF872)
DUF202	PF02656.10	gi|257053139|ref|YP_003130972.1|	-	0.13	12.4	0.7	0.5	10.6	0.5	1.9	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF202)
DUF3397	PF11877.3	gi|257053139|ref|YP_003130972.1|	-	0.8	9.7	5.4	0.17	11.8	1.4	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3397)
Cuticle_2	PF08184.6	gi|257053141|ref|YP_003130974.1|	-	0.043	13.5	0.0	0.058	13.1	0.0	1.2	1	0	0	1	1	1	0	Cuticle	protein	7	isoform	family
PMSR	PF01625.16	gi|257053142|ref|YP_003130975.1|	-	4.3e-66	221.5	0.8	5.1e-66	221.3	0.6	1.0	1	0	0	1	1	1	1	Peptide	methionine	sulfoxide	reductase
Pyr_redox_2	PF07992.9	gi|257053143|ref|YP_003130976.1|	-	2e-21	76.8	0.0	4.1e-21	75.7	0.0	1.9	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|257053143|ref|YP_003130976.1|	-	2.3e-12	47.1	0.3	5.2e-11	42.7	0.0	2.5	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|257053143|ref|YP_003130976.1|	-	5.4e-10	39.6	0.0	1.2e-07	32.0	0.0	2.4	1	1	1	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|257053143|ref|YP_003130976.1|	-	3e-06	26.3	2.2	0.0029	16.5	0.2	2.8	2	1	0	2	2	2	2	FAD	dependent	oxidoreductase
HI0933_like	PF03486.9	gi|257053143|ref|YP_003130976.1|	-	0.00051	18.6	0.2	0.42	9.0	0.0	3.1	4	0	0	4	4	4	2	HI0933-like	protein
FAD_binding_2	PF00890.19	gi|257053143|ref|YP_003130976.1|	-	0.0006	18.7	3.4	0.0024	16.7	0.0	3.0	2	1	0	3	3	3	1	FAD	binding	domain
NAD_binding_8	PF13450.1	gi|257053143|ref|YP_003130976.1|	-	0.0018	18.2	0.1	0.0075	16.2	0.0	2.2	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
NAD_binding_7	PF13241.1	gi|257053143|ref|YP_003130976.1|	-	0.0063	16.7	0.1	0.067	13.4	0.0	2.3	2	1	0	2	2	2	1	Putative	NAD(P)-binding
Thi4	PF01946.12	gi|257053143|ref|YP_003130976.1|	-	0.072	12.1	0.0	0.44	9.5	0.0	2.0	2	0	0	2	2	2	0	Thi4	family
Trp_halogenase	PF04820.9	gi|257053143|ref|YP_003130976.1|	-	0.12	10.9	1.6	3.9	5.9	0.1	2.7	3	0	0	3	3	3	0	Tryptophan	halogenase
BCCT	PF02028.12	gi|257053144|ref|YP_003130977.1|	-	2.6e-162	540.4	42.4	3.1e-162	540.2	29.4	1.0	1	0	0	1	1	1	1	BCCT	family	transporter
PAS_3	PF08447.6	gi|257053145|ref|YP_003130978.1|	-	2e-30	104.7	0.8	5.2e-20	71.3	0.1	2.5	2	0	0	2	2	2	2	PAS	fold
PAS_9	PF13426.1	gi|257053145|ref|YP_003130978.1|	-	9.6e-18	64.4	0.4	3.7e-10	40.0	0.1	2.5	2	0	0	2	2	2	2	PAS	domain
HATPase_c	PF02518.21	gi|257053145|ref|YP_003130978.1|	-	1.6e-17	63.1	0.1	3.8e-17	61.9	0.1	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_4	PF08448.5	gi|257053145|ref|YP_003130978.1|	-	7.4e-08	32.4	1.4	0.00022	21.2	0.1	2.5	2	0	0	2	2	2	2	PAS	fold
HATPase_c_2	PF13581.1	gi|257053145|ref|YP_003130978.1|	-	4.3e-07	29.7	1.5	2e-06	27.5	0.0	2.7	3	1	0	3	3	3	1	Histidine	kinase-like	ATPase	domain
PAS	PF00989.19	gi|257053145|ref|YP_003130978.1|	-	2.5e-06	27.2	0.0	8.7e-05	22.2	0.0	2.5	2	0	0	2	2	2	1	PAS	fold
HATPase_c_5	PF14501.1	gi|257053145|ref|YP_003130978.1|	-	3.5e-05	23.4	0.0	8e-05	22.2	0.0	1.5	1	0	0	1	1	1	1	GHKL	domain
PAS_11	PF14598.1	gi|257053145|ref|YP_003130978.1|	-	6.6e-05	22.8	0.0	0.00055	19.8	0.0	2.2	2	0	0	2	2	2	1	PAS	domain
HisKA	PF00512.20	gi|257053145|ref|YP_003130978.1|	-	0.015	15.3	0.4	0.03	14.2	0.3	1.5	1	0	0	1	1	1	0	His	Kinase	A	(phospho-acceptor)	domain
SPOB_a	PF14689.1	gi|257053145|ref|YP_003130978.1|	-	0.18	11.3	2.9	0.24	10.9	0.6	2.1	2	0	0	2	2	2	0	Sensor_kinase_SpoOB-type,	alpha-helical	domain
HTH_10	PF04967.7	gi|257053146|ref|YP_003130979.1|	-	9.9e-22	76.2	0.1	2e-21	75.2	0.1	1.6	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Response_reg	PF00072.19	gi|257053146|ref|YP_003130979.1|	-	3.1e-20	72.2	0.2	9.1e-20	70.7	0.2	1.8	1	0	0	1	1	1	1	Response	regulator	receiver	domain
GAF_2	PF13185.1	gi|257053146|ref|YP_003130979.1|	-	2.9e-15	57.0	3.7	1.8e-14	54.4	0.2	3.4	3	0	0	3	3	3	1	GAF	domain
PAS	PF00989.19	gi|257053146|ref|YP_003130979.1|	-	1.5e-13	50.4	0.0	3.8e-13	49.1	0.0	1.7	1	0	0	1	1	1	1	PAS	fold
PAS_3	PF08447.6	gi|257053146|ref|YP_003130979.1|	-	2.4e-10	40.3	0.0	5.6e-10	39.1	0.0	1.7	1	0	0	1	1	1	1	PAS	fold
PAS_4	PF08448.5	gi|257053146|ref|YP_003130979.1|	-	6.5e-10	39.0	0.5	3.1e-09	36.8	0.3	2.3	1	0	0	1	1	1	1	PAS	fold
PAS_9	PF13426.1	gi|257053146|ref|YP_003130979.1|	-	9.7e-09	35.5	0.0	3.3e-08	33.8	0.0	1.9	2	0	0	2	2	1	1	PAS	domain
PAS_8	PF13188.1	gi|257053146|ref|YP_003130979.1|	-	3.8e-08	32.8	0.1	2.4e-07	30.3	0.0	2.4	2	0	0	2	2	2	1	PAS	domain
GAF	PF01590.21	gi|257053146|ref|YP_003130979.1|	-	7.7e-08	32.6	1.3	7.9e-07	29.3	0.0	3.1	3	1	0	4	4	4	1	GAF	domain
GAF_3	PF13492.1	gi|257053146|ref|YP_003130979.1|	-	2.4e-06	27.6	0.0	7.1e-06	26.1	0.0	1.9	1	0	0	1	1	1	1	GAF	domain
Sigma70_r4	PF04545.11	gi|257053146|ref|YP_003130979.1|	-	0.00011	21.4	0.1	0.00034	19.8	0.0	1.9	1	1	0	1	1	1	1	Sigma-70,	region	4
HTH_38	PF13936.1	gi|257053146|ref|YP_003130979.1|	-	0.004	16.6	0.1	0.0092	15.5	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
DUF3798	PF12683.2	gi|257053146|ref|YP_003130979.1|	-	0.0058	15.7	0.1	0.024	13.7	0.0	2.0	3	0	0	3	3	3	1	Protein	of	unknown	function	(DUF3798)
HTH_20	PF12840.2	gi|257053146|ref|YP_003130979.1|	-	0.01	15.6	0.2	0.031	14.0	0.1	1.8	1	0	0	1	1	1	0	Helix-turn-helix	domain
Sigma70_r4_2	PF08281.7	gi|257053146|ref|YP_003130979.1|	-	0.012	15.0	0.1	0.14	11.5	0.1	2.7	2	1	0	2	2	2	0	Sigma-70,	region	4
DUF1676	PF07898.8	gi|257053146|ref|YP_003130979.1|	-	0.018	15.3	0.0	0.062	13.6	0.0	1.9	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1676)
CPSase_L_D2	PF02786.12	gi|257053146|ref|YP_003130979.1|	-	0.025	13.8	0.2	0.073	12.3	0.0	1.8	2	0	0	2	2	2	0	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
MarR_2	PF12802.2	gi|257053146|ref|YP_003130979.1|	-	0.026	14.1	0.6	0.12	12.1	0.1	2.5	2	0	0	2	2	2	0	MarR	family
HTH_23	PF13384.1	gi|257053146|ref|YP_003130979.1|	-	0.05	13.2	0.0	0.13	11.9	0.0	1.6	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_24	PF13412.1	gi|257053146|ref|YP_003130979.1|	-	0.12	11.8	0.0	0.25	10.7	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
GerE	PF00196.14	gi|257053146|ref|YP_003130979.1|	-	0.13	11.5	0.0	0.35	10.2	0.0	1.7	1	1	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
Glug	PF07581.7	gi|257053147|ref|YP_003130980.1|	-	9.2e-70	226.3	507.9	9.4e-05	22.3	4.6	51.0	49	3	3	52	52	52	41	The	GLUG	motif
Big_3_3	PF13750.1	gi|257053147|ref|YP_003130980.1|	-	3.3e-11	42.8	24.5	0.0086	15.5	0.2	6.3	6	0	0	6	6	6	4	Bacterial	Ig-like	domain	(group	3)
Peptidase_M26_N	PF05342.9	gi|257053147|ref|YP_003130980.1|	-	4.5e-11	42.2	1.2	0.18	10.7	0.0	5.9	5	0	0	5	5	5	5	M26	IgA1-specific	Metallo-endopeptidase	N-terminal	region
DUF1641	PF07849.6	gi|257053148|ref|YP_003130981.1|	-	2.3e-15	55.9	1.5	1e-14	53.8	0.1	2.3	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF1641)
CHASE3	PF05227.8	gi|257053148|ref|YP_003130981.1|	-	0.17	11.5	2.9	0.47	10.1	0.4	2.6	1	1	2	3	3	3	0	CHASE3	domain
Pyr_redox_2	PF07992.9	gi|257053149|ref|YP_003130982.1|	-	2.3e-14	53.7	0.0	3.5e-14	53.1	0.0	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.1	gi|257053149|ref|YP_003130982.1|	-	8.8e-06	25.5	1.4	0.016	14.9	0.0	2.4	1	1	1	2	2	2	2	FAD-NAD(P)-binding
DAO	PF01266.19	gi|257053149|ref|YP_003130982.1|	-	0.0012	17.8	0.7	0.99	8.2	0.0	2.2	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
Lycopene_cycl	PF05834.7	gi|257053149|ref|YP_003130982.1|	-	0.0057	15.6	0.2	0.41	9.5	0.2	2.1	1	1	1	2	2	2	2	Lycopene	cyclase	protein
HI0933_like	PF03486.9	gi|257053149|ref|YP_003130982.1|	-	0.0082	14.6	0.2	5.9	5.2	0.0	3.0	3	0	0	3	3	3	2	HI0933-like	protein
GIDA	PF01134.17	gi|257053149|ref|YP_003130982.1|	-	0.13	11.0	0.0	6.6	5.4	0.0	2.5	2	0	0	2	2	2	0	Glucose	inhibited	division	protein	A
TusA	PF01206.12	gi|257053150|ref|YP_003130983.1|	-	1.1e-20	73.0	0.0	1.2e-20	72.8	0.0	1.0	1	0	0	1	1	1	1	Sulfurtransferase	TusA
DrsE_2	PF13686.1	gi|257053151|ref|YP_003130984.1|	-	5.7e-11	42.4	0.4	4.8e-09	36.1	0.3	2.0	1	1	0	1	1	1	1	DsrE/DsrF/DrsH-like	family
EF-hand_8	PF13833.1	gi|257053151|ref|YP_003130984.1|	-	0.032	13.8	0.3	0.058	13.0	0.2	1.5	1	0	0	1	1	1	0	EF-hand	domain	pair
MgtE	PF01769.11	gi|257053152|ref|YP_003130985.1|	-	7.2e-20	71.6	5.3	7.2e-20	71.6	3.7	1.4	2	0	0	2	2	2	1	Divalent	cation	transporter
TMEM237	PF15383.1	gi|257053152|ref|YP_003130985.1|	-	0.18	10.9	0.2	0.34	9.9	0.1	1.4	1	0	0	1	1	1	0	Transmembrane	protein	237
MgtE	PF01769.11	gi|257053153|ref|YP_003130986.1|	-	8.8e-20	71.3	12.9	1.5e-19	70.5	9.0	1.3	1	0	0	1	1	1	1	Divalent	cation	transporter
HAD_2	PF13419.1	gi|257053154|ref|YP_003130987.1|	-	1.4e-23	83.9	3.3	1.6e-23	83.7	2.3	1.0	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|257053154|ref|YP_003130987.1|	-	2.4e-11	43.1	2.0	3e-11	42.8	0.1	2.1	3	0	0	3	3	3	1	HAD-hyrolase-like
Hydrolase	PF00702.21	gi|257053154|ref|YP_003130987.1|	-	2.6e-10	41.0	4.1	1.2e-09	38.9	2.9	1.8	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.2	gi|257053154|ref|YP_003130987.1|	-	0.0022	18.2	3.0	0.0049	17.0	2.1	1.6	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.7	gi|257053154|ref|YP_003130987.1|	-	0.04	13.4	0.1	2.6	7.5	0.0	2.2	2	0	0	2	2	2	0	haloacid	dehalogenase-like	hydrolase
YdfZ	PF14001.1	gi|257053154|ref|YP_003130987.1|	-	0.11	12.8	0.0	0.21	11.8	0.0	1.5	1	0	0	1	1	1	0	YdfZ	protein
DUF3529	PF12046.3	gi|257053155|ref|YP_003130988.1|	-	0.52	9.3	5.8	0.34	9.9	2.6	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3529)
RNA_binding	PF01877.12	gi|257053157|ref|YP_003130990.1|	-	2.9e-23	82.1	0.1	4.2e-23	81.6	0.0	1.2	1	0	0	1	1	1	1	RNA	binding
AAA_18	PF13238.1	gi|257053158|ref|YP_003130991.1|	-	1.8e-11	44.4	0.0	2.5e-11	43.9	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|257053158|ref|YP_003130991.1|	-	2.6e-10	41.1	0.0	4.1e-10	40.5	0.0	1.3	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.1	gi|257053158|ref|YP_003130991.1|	-	2.3e-08	34.0	0.0	4.4e-08	33.0	0.0	1.5	2	0	0	2	2	2	1	AAA	domain
PEP-utilizers	PF00391.18	gi|257053158|ref|YP_003130991.1|	-	0.03	13.8	0.6	0.09	12.3	0.4	1.9	1	1	0	1	1	1	0	PEP-utilising	enzyme,	mobile	domain
ADK	PF00406.17	gi|257053158|ref|YP_003130991.1|	-	0.055	13.3	0.0	0.059	13.2	0.0	1.3	1	1	0	1	1	1	0	Adenylate	kinase
RBD	PF02196.10	gi|257053158|ref|YP_003130991.1|	-	0.095	12.4	0.0	0.16	11.7	0.0	1.4	1	0	0	1	1	1	0	Raf-like	Ras-binding	domain
DUF2244	PF10003.4	gi|257053159|ref|YP_003130992.1|	-	0.064	12.6	0.1	0.071	12.4	0.1	1.0	1	0	0	1	1	1	0	Integral	membrane	protein	(DUF2244)
LtrA	PF06772.6	gi|257053159|ref|YP_003130992.1|	-	0.096	11.5	0.0	0.099	11.5	0.0	1.0	1	0	0	1	1	1	0	Bacterial	low	temperature	requirement	A	protein	(LtrA)
PhoU_div	PF01865.11	gi|257053160|ref|YP_003130993.1|	-	5.5e-19	68.1	3.7	2.4e-18	66.0	2.5	1.8	1	1	0	1	1	1	1	Protein	of	unknown	function	DUF47
GAT	PF03127.9	gi|257053160|ref|YP_003130993.1|	-	9.7e-06	25.4	0.7	0.012	15.5	0.0	2.6	2	1	0	2	2	2	2	GAT	domain
YmgB	PF10798.3	gi|257053160|ref|YP_003130993.1|	-	0.083	12.7	0.3	0.77	9.6	0.0	2.5	2	0	0	2	2	2	0	Biofilm	development	protein	YmgB/AriR
DUF1993	PF09351.5	gi|257053160|ref|YP_003130993.1|	-	0.12	12.2	0.0	0.94	9.3	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1993)
PhoU	PF01895.14	gi|257053160|ref|YP_003130993.1|	-	1.5	9.3	9.8	3	8.3	2.5	2.6	2	2	0	2	2	2	0	PhoU	domain
FG-GAP_2	PF14312.1	gi|257053161|ref|YP_003130994.1|	-	3.4e-21	74.9	23.0	6.3e-07	29.3	0.6	6.8	7	0	0	7	7	7	5	FG-GAP	repeat
AnfO_nitrog	PF09582.5	gi|257053161|ref|YP_003130994.1|	-	0.00079	18.6	0.0	3.2	6.8	0.0	3.8	5	0	0	5	5	5	2	Iron	only	nitrogenase	protein	AnfO	(AnfO_nitrog)
PQQ_3	PF13570.1	gi|257053161|ref|YP_003130994.1|	-	0.001	19.2	21.7	1.8	8.9	0.3	6.1	6	0	0	6	6	6	4	PQQ-like	domain
Rhodanese	PF00581.15	gi|257053162|ref|YP_003130995.1|	-	3e-35	120.9	0.3	6.6e-18	65.1	0.0	2.1	2	0	0	2	2	2	2	Rhodanese-like	domain
Rhodanese	PF00581.15	gi|257053163|ref|YP_003130996.1|	-	4.1e-39	133.4	0.0	7.4e-20	71.3	0.0	2.0	2	0	0	2	2	2	2	Rhodanese-like	domain
UPF0118	PF01594.11	gi|257053164|ref|YP_003130997.1|	-	1.2e-28	100.1	33.2	1e-27	97.0	23.0	1.9	1	1	0	1	1	1	1	Domain	of	unknown	function	DUF20
2Fe-2S_thioredx	PF01257.14	gi|257053165|ref|YP_003130998.1|	-	5.9e-47	158.8	0.1	7.1e-47	158.6	0.1	1.1	1	0	0	1	1	1	1	Thioredoxin-like	[2Fe-2S]	ferredoxin
DUF1636	PF07845.6	gi|257053165|ref|YP_003130998.1|	-	0.0025	18.0	0.3	0.0048	17.1	0.2	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1636)
Complex1_51K	PF01512.12	gi|257053166|ref|YP_003130999.1|	-	1.4e-51	174.1	0.0	3.7e-51	172.8	0.0	1.7	2	0	0	2	2	2	1	Respiratory-chain	NADH	dehydrogenase	51	Kd	subunit
NADH_4Fe-4S	PF10589.4	gi|257053166|ref|YP_003130999.1|	-	1.5e-15	56.0	0.0	1.5e-15	56.0	0.0	2.6	2	0	0	2	2	2	1	NADH-ubiquinone	oxidoreductase-F	iron-sulfur	binding	region
Fer4	PF00037.22	gi|257053166|ref|YP_003130999.1|	-	1.4e-11	43.5	27.5	5.3e-07	28.9	3.9	3.3	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|257053166|ref|YP_003130999.1|	-	6.9e-10	38.6	27.9	3.9e-08	33.0	10.0	2.7	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
SLBB	PF10531.4	gi|257053166|ref|YP_003130999.1|	-	7.3e-10	38.5	3.2	2.3e-09	37.0	2.2	1.9	1	0	0	1	1	1	1	SLBB	domain
Fer4_9	PF13187.1	gi|257053166|ref|YP_003130999.1|	-	1.4e-09	38.0	27.8	1.7e-07	31.3	9.9	3.4	3	1	1	4	4	3	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|257053166|ref|YP_003130999.1|	-	2.6e-09	37.3	13.5	2.6e-09	37.3	9.4	2.4	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|257053166|ref|YP_003130999.1|	-	2.4e-07	30.4	15.2	2.4e-07	30.4	10.6	2.7	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|257053166|ref|YP_003130999.1|	-	2.7e-05	23.8	24.6	0.0011	18.7	2.5	4.1	4	0	0	4	4	4	2	4Fe-4S	binding	domain
Fer4_16	PF13484.1	gi|257053166|ref|YP_003130999.1|	-	4.4e-05	24.1	15.3	0.0016	19.1	1.2	3.3	3	0	0	3	3	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_18	PF13746.1	gi|257053166|ref|YP_003130999.1|	-	7.5e-05	23.0	17.6	0.0043	17.4	1.7	2.9	3	0	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|257053166|ref|YP_003130999.1|	-	0.00014	21.5	26.4	0.0012	18.5	3.9	3.6	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_8	PF13183.1	gi|257053166|ref|YP_003130999.1|	-	0.00023	21.1	12.6	0.00023	21.1	8.7	3.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|257053166|ref|YP_003130999.1|	-	0.0004	20.4	24.5	0.0024	18.0	1.9	3.4	3	0	0	3	3	3	2	4Fe-4S	binding	domain
2Fe-2S_thioredx	PF01257.14	gi|257053166|ref|YP_003130999.1|	-	0.0012	18.4	0.0	0.0024	17.4	0.0	1.5	1	0	0	1	1	1	1	Thioredoxin-like	[2Fe-2S]	ferredoxin
DUF1636	PF07845.6	gi|257053166|ref|YP_003130999.1|	-	0.0096	16.1	0.0	0.021	15.0	0.0	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1636)
Fer4_3	PF12798.2	gi|257053166|ref|YP_003130999.1|	-	0.017	15.6	5.8	0.017	15.6	4.1	3.7	4	0	0	4	4	2	0	4Fe-4S	binding	domain
Fer4_15	PF13459.1	gi|257053166|ref|YP_003130999.1|	-	0.019	15.5	16.2	0.19	12.3	1.3	3.7	3	0	0	3	3	3	0	4Fe-4S	single	cluster	domain
Fer4_11	PF13247.1	gi|257053166|ref|YP_003130999.1|	-	0.023	14.5	4.5	0.061	13.2	3.1	1.7	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|257053166|ref|YP_003130999.1|	-	0.46	10.8	23.8	1.7	9.0	1.9	3.8	2	1	1	3	3	3	0	4Fe-4S	dicluster	domain
Fer2_4	PF13510.1	gi|257053167|ref|YP_003131000.1|	-	1.1e-20	73.2	1.5	1.1e-20	73.2	1.1	2.9	2	0	0	2	2	2	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Molybdopterin	PF00384.17	gi|257053167|ref|YP_003131000.1|	-	1.1e-11	44.1	0.1	2.7e-09	36.2	0.1	2.3	2	0	0	2	2	2	2	Molybdopterin	oxidoreductase
NADH-G_4Fe-4S_3	PF10588.4	gi|257053167|ref|YP_003131000.1|	-	1.7e-09	36.7	0.7	5.7e-09	35.0	0.5	2.0	1	0	0	1	1	1	1	NADH-ubiquinone	oxidoreductase-G	iron-sulfur	binding	region
Fer4_8	PF13183.1	gi|257053167|ref|YP_003131000.1|	-	9e-09	35.2	5.8	9e-09	35.2	4.0	3.3	3	1	0	3	3	2	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|257053167|ref|YP_003131000.1|	-	1.5e-08	34.7	6.7	1.5e-08	34.7	4.7	3.2	3	1	0	3	3	2	1	4Fe-4S	dicluster	domain
Molybdop_Fe4S4	PF04879.11	gi|257053167|ref|YP_003131000.1|	-	4e-07	29.7	1.0	4e-07	29.7	0.7	2.4	2	0	0	2	2	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
Fer4	PF00037.22	gi|257053167|ref|YP_003131000.1|	-	3.2e-06	26.4	11.7	5.2e-05	22.6	1.0	3.5	4	0	0	4	4	3	2	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|257053167|ref|YP_003131000.1|	-	1.3e-05	24.9	7.7	1.3e-05	24.9	5.4	2.9	1	1	2	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|257053167|ref|YP_003131000.1|	-	1.5e-05	24.6	10.7	0.00015	21.4	1.5	4.1	5	0	0	5	5	3	2	4Fe-4S	binding	domain
Fer4_2	PF12797.2	gi|257053167|ref|YP_003131000.1|	-	5.1e-05	22.9	13.5	0.00029	20.5	1.7	4.1	4	0	0	4	4	3	2	4Fe-4S	binding	domain
Fer4_7	PF12838.2	gi|257053167|ref|YP_003131000.1|	-	0.00014	22.1	30.7	0.0024	18.2	7.0	3.5	2	1	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_15	PF13459.1	gi|257053167|ref|YP_003131000.1|	-	0.00074	20.0	1.0	0.00074	20.0	0.7	5.2	7	0	0	7	7	4	2	4Fe-4S	single	cluster	domain
Fer4_10	PF13237.1	gi|257053167|ref|YP_003131000.1|	-	0.00092	18.9	29.3	0.0049	16.6	1.3	3.2	2	1	1	3	3	3	3	4Fe-4S	dicluster	domain
DUF348	PF03990.9	gi|257053167|ref|YP_003131000.1|	-	0.0038	16.7	9.0	0.086	12.4	0.1	4.4	5	0	0	5	5	5	2	Domain	of	unknown	function	(DUF348)
Fer4_4	PF12800.2	gi|257053167|ref|YP_003131000.1|	-	0.011	16.0	2.5	0.011	16.0	1.7	4.5	5	0	0	5	5	4	0	4Fe-4S	binding	domain
Fer4_3	PF12798.2	gi|257053167|ref|YP_003131000.1|	-	0.031	14.8	6.3	0.031	14.8	4.4	3.9	4	0	0	4	4	2	0	4Fe-4S	binding	domain
Fer4_13	PF13370.1	gi|257053167|ref|YP_003131000.1|	-	0.34	11.3	17.9	0.095	13.0	0.8	3.4	3	0	0	3	3	2	0	4Fe-4S	single	cluster	domain
Fer4_16	PF13484.1	gi|257053167|ref|YP_003131000.1|	-	2.2	9.1	24.2	4.2	8.2	0.9	3.8	3	1	0	3	3	3	0	4Fe-4S	double	cluster	binding	domain
Fer4_17	PF13534.1	gi|257053167|ref|YP_003131000.1|	-	3	8.2	32.8	0.32	11.3	5.0	3.9	2	2	2	4	4	3	0	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|257053167|ref|YP_003131000.1|	-	8.2	6.9	28.9	0.049	14.0	1.6	3.7	2	1	1	3	3	3	0	4Fe-4S	dicluster	domain
Oxidored_q6	PF01058.17	gi|257053168|ref|YP_003131001.1|	-	9.3e-27	93.2	0.1	1.1e-26	92.9	0.1	1.1	1	0	0	1	1	1	1	NADH	ubiquinone	oxidoreductase,	20	Kd	subunit
PGA2	PF07543.7	gi|257053168|ref|YP_003131001.1|	-	0.021	14.6	0.0	0.037	13.8	0.0	1.4	1	0	0	1	1	1	0	Protein	trafficking	PGA2
Urease_alpha	PF00449.15	gi|257053168|ref|YP_003131001.1|	-	0.045	13.8	0.4	0.081	13.0	0.2	1.4	1	1	0	1	1	1	0	Urease	alpha-subunit,	N-terminal	domain
NiFeSe_Hases	PF00374.14	gi|257053169|ref|YP_003131002.1|	-	1.6e-41	142.7	0.0	5.3e-19	68.3	0.0	3.0	1	1	1	3	3	3	3	Nickel-dependent	hydrogenase
HycI	PF01750.13	gi|257053170|ref|YP_003131003.1|	-	3.4e-10	39.5	0.0	4e-10	39.3	0.0	1.1	1	0	0	1	1	1	1	Hydrogenase	maturation	protease
DUF2061	PF09834.4	gi|257053171|ref|YP_003131004.1|	-	1.1e-16	60.7	3.3	1.2e-16	60.5	2.3	1.1	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2061)
DUF420	PF04238.7	gi|257053171|ref|YP_003131004.1|	-	0.056	13.3	0.2	0.065	13.1	0.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF420)
HrcA_DNA-bdg	PF03444.10	gi|257053172|ref|YP_003131005.1|	-	1.1e-25	88.8	0.0	1.6e-25	88.3	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
Rrf2	PF02082.15	gi|257053172|ref|YP_003131005.1|	-	3.8e-08	33.3	0.0	6.7e-08	32.5	0.0	1.4	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_11	PF08279.7	gi|257053172|ref|YP_003131005.1|	-	1e-05	25.0	0.0	1.5e-05	24.4	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
TrmB	PF01978.14	gi|257053172|ref|YP_003131005.1|	-	0.0039	16.8	0.0	0.0061	16.2	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Fe_dep_repress	PF01325.14	gi|257053172|ref|YP_003131005.1|	-	0.0088	15.9	0.1	0.017	15.0	0.0	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_27	PF13463.1	gi|257053172|ref|YP_003131005.1|	-	0.011	16.0	0.0	0.018	15.3	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_24	PF13412.1	gi|257053172|ref|YP_003131005.1|	-	0.022	14.1	0.0	0.037	13.4	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.2	gi|257053172|ref|YP_003131005.1|	-	0.024	14.3	0.0	0.044	13.4	0.0	1.5	1	0	0	1	1	1	0	MarR	family
HTH_20	PF12840.2	gi|257053172|ref|YP_003131005.1|	-	0.079	12.7	0.0	0.14	12.0	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
Epimerase	PF01370.16	gi|257053173|ref|YP_003131006.1|	-	1.8e-21	76.6	0.9	4.9e-15	55.5	0.0	2.2	1	1	1	2	2	2	2	NAD	dependent	epimerase/dehydratase	family
NAD_binding_10	PF13460.1	gi|257053173|ref|YP_003131006.1|	-	1.7e-16	60.7	0.1	3e-16	59.9	0.1	1.4	1	0	0	1	1	1	1	NADH(P)-binding
RmlD_sub_bind	PF04321.12	gi|257053173|ref|YP_003131006.1|	-	9.6e-14	50.9	0.6	4.4e-13	48.7	0.4	1.9	1	1	0	1	1	1	1	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.14	gi|257053173|ref|YP_003131006.1|	-	5.3e-06	25.3	0.2	0.00021	20.0	0.2	2.1	1	1	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NmrA	PF05368.8	gi|257053173|ref|YP_003131006.1|	-	0.00091	18.5	0.4	0.0041	16.4	0.2	2.1	1	1	0	1	1	1	1	NmrA-like	family
NAD_binding_4	PF07993.7	gi|257053173|ref|YP_003131006.1|	-	0.0038	16.2	0.1	0.041	12.7	0.0	2.1	1	1	1	2	2	2	1	Male	sterility	protein
F420_oxidored	PF03807.12	gi|257053173|ref|YP_003131006.1|	-	0.015	15.7	0.0	0.032	14.6	0.0	1.6	1	0	0	1	1	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
adh_short	PF00106.20	gi|257053173|ref|YP_003131006.1|	-	0.017	15.0	0.1	0.039	13.8	0.0	1.6	1	0	0	1	1	1	0	short	chain	dehydrogenase
DAO	PF01266.19	gi|257053173|ref|YP_003131006.1|	-	0.02	13.7	0.5	0.036	12.9	0.4	1.4	1	0	0	1	1	1	0	FAD	dependent	oxidoreductase
Glyco_trans_4_4	PF13579.1	gi|257053173|ref|YP_003131006.1|	-	0.041	14.0	1.7	0.72	9.9	0.0	2.7	2	1	0	2	2	2	0	Glycosyl	transferase	4-like	domain
DUF2554	PF10829.3	gi|257053173|ref|YP_003131006.1|	-	0.13	12.4	0.0	0.45	10.6	0.0	1.9	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2554)
3HCDH_N	PF02737.13	gi|257053173|ref|YP_003131006.1|	-	0.13	11.8	0.1	0.22	11.1	0.0	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ApbA	PF02558.11	gi|257053173|ref|YP_003131006.1|	-	0.15	11.5	0.0	0.27	10.6	0.0	1.5	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
GST_N_3	PF13417.1	gi|257053174|ref|YP_003131007.1|	-	1.3e-14	54.1	0.0	1.4e-14	54.0	0.0	1.1	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
Glutaredoxin	PF00462.19	gi|257053174|ref|YP_003131007.1|	-	1e-11	44.6	0.0	1.7e-11	43.9	0.0	1.3	1	0	0	1	1	1	1	Glutaredoxin
GST_N_2	PF13409.1	gi|257053174|ref|YP_003131007.1|	-	2.5e-11	43.4	0.0	2.9e-11	43.1	0.0	1.1	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
GST_N	PF02798.15	gi|257053174|ref|YP_003131007.1|	-	0.0033	17.5	0.0	0.004	17.2	0.0	1.1	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
DUF836	PF05768.9	gi|257053174|ref|YP_003131007.1|	-	0.016	15.4	0.1	0.016	15.4	0.0	1.3	1	1	0	1	1	1	0	Glutaredoxin-like	domain	(DUF836)
Thioredoxin_2	PF13098.1	gi|257053174|ref|YP_003131007.1|	-	0.093	12.9	0.0	0.11	12.6	0.0	1.4	1	1	0	1	1	1	0	Thioredoxin-like	domain
AhpC-TSA	PF00578.16	gi|257053175|ref|YP_003131008.1|	-	6.5e-21	74.3	0.0	7.8e-21	74.0	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.5	gi|257053175|ref|YP_003131008.1|	-	8.2e-08	31.9	0.0	2.5e-07	30.3	0.0	1.7	1	1	0	1	1	1	1	Redoxin
AhpC-TSA_2	PF13911.1	gi|257053175|ref|YP_003131008.1|	-	0.023	14.6	0.0	0.9	9.4	0.0	2.2	1	1	0	1	1	1	0	AhpC/TSA	antioxidant	enzyme
zf-Di19	PF05605.7	gi|257053176|ref|YP_003131009.1|	-	0.049	13.7	0.3	0.096	12.8	0.2	1.5	1	0	0	1	1	1	0	Drought	induced	19	protein	(Di19),	zinc-binding
Cys_rich_CPXG	PF14255.1	gi|257053176|ref|YP_003131009.1|	-	0.13	12.1	0.3	0.13	12.1	0.2	1.8	2	0	0	2	2	2	0	Cysteine-rich	CPXCG
Zn-ribbon_8	PF09723.5	gi|257053176|ref|YP_003131009.1|	-	0.21	11.5	0.1	0.21	11.5	0.1	1.9	2	1	0	2	2	2	0	Zinc	ribbon	domain
zf-RING-like	PF08746.6	gi|257053176|ref|YP_003131009.1|	-	0.36	10.8	1.7	1.2	9.2	1.2	1.8	1	1	0	1	1	1	0	RING-like	domain
FANCL_C	PF11793.3	gi|257053176|ref|YP_003131009.1|	-	1.8	8.6	4.2	23	5.0	2.9	2.0	1	1	0	1	1	1	0	FANCL	C-terminal	domain
Thioredoxin_3	PF13192.1	gi|257053177|ref|YP_003131010.1|	-	3.2e-19	68.4	0.6	1.3e-13	50.5	0.0	2.8	2	1	0	2	2	2	2	Thioredoxin	domain
Glutaredoxin	PF00462.19	gi|257053177|ref|YP_003131010.1|	-	2.3e-13	49.9	0.0	8.4e-10	38.5	0.0	2.6	2	0	0	2	2	2	2	Glutaredoxin
Thioredoxin_2	PF13098.1	gi|257053177|ref|YP_003131010.1|	-	4.3e-11	42.9	1.4	2.2e-05	24.6	0.8	3.2	2	1	0	2	2	2	2	Thioredoxin-like	domain
Thioredoxin_9	PF14595.1	gi|257053177|ref|YP_003131010.1|	-	3e-09	36.5	0.0	0.00077	19.0	0.0	2.1	2	0	0	2	2	2	2	Thioredoxin
Thioredoxin	PF00085.15	gi|257053177|ref|YP_003131010.1|	-	3.8e-05	23.3	0.0	9.8e-05	21.9	0.0	1.6	2	0	0	2	2	2	1	Thioredoxin
Thioredoxin_4	PF13462.1	gi|257053177|ref|YP_003131010.1|	-	8.4e-05	22.6	2.5	0.072	13.0	0.3	3.1	2	1	1	3	3	3	2	Thioredoxin
DUF836	PF05768.9	gi|257053177|ref|YP_003131010.1|	-	0.00026	21.2	0.0	0.14	12.4	0.0	2.4	2	0	0	2	2	2	2	Glutaredoxin-like	domain	(DUF836)
ABC_transp_aux	PF09822.4	gi|257053177|ref|YP_003131010.1|	-	0.001	18.6	0.0	1.2	8.4	0.0	2.1	2	0	0	2	2	2	2	ABC-type	uncharacterized	transport	system
DSBA	PF01323.15	gi|257053177|ref|YP_003131010.1|	-	0.029	13.9	0.8	0.062	12.8	0.1	1.9	1	1	1	2	2	2	0	DSBA-like	thioredoxin	domain
TraF	PF13728.1	gi|257053177|ref|YP_003131010.1|	-	0.14	11.6	0.0	3.1	7.2	0.0	2.2	2	0	0	2	2	2	0	F	plasmid	transfer	operon	protein
Glyco_hydro_2_C	PF02836.12	gi|257053178|ref|YP_003131011.1|	-	3.1e-34	118.2	0.0	6.1e-34	117.2	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	2,	TIM	barrel	domain
Glyco_hydro_2_N	PF02837.13	gi|257053178|ref|YP_003131011.1|	-	3.7e-28	98.1	0.0	6e-28	97.4	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	2,	sugar	binding	domain
Glyco_hydro_2	PF00703.16	gi|257053178|ref|YP_003131011.1|	-	2.1e-16	60.3	0.5	5.9e-16	58.8	0.1	1.9	2	0	0	2	2	2	1	Glycosyl	hydrolases	family	2
Cellulase-like	PF12876.2	gi|257053178|ref|YP_003131011.1|	-	0.067	13.6	0.0	0.15	12.4	0.0	1.7	1	0	0	1	1	1	0	Sugar-binding	cellulase-like
DUF3902	PF13042.1	gi|257053179|ref|YP_003131012.1|	-	0.096	11.9	3.0	0.86	8.8	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3902)
TerC	PF03741.11	gi|257053179|ref|YP_003131012.1|	-	4	6.8	8.0	0.39	10.1	2.2	1.7	1	1	0	1	1	1	0	Integral	membrane	protein	TerC	family
Cpn60_TCP1	PF00118.19	gi|257053180|ref|YP_003131013.1|	-	9.3e-143	476.3	0.2	1.1e-142	476.0	0.2	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
ABC_tran	PF00005.22	gi|257053181|ref|YP_003131014.1|	-	1e-26	93.8	0.0	1.4e-26	93.4	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.7	gi|257053181|ref|YP_003131014.1|	-	1.9e-13	50.5	0.7	3.9e-13	49.5	0.5	1.6	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.1	gi|257053181|ref|YP_003131014.1|	-	7.6e-09	35.9	0.0	8.4e-05	22.6	0.0	2.2	1	1	1	2	2	2	2	AAA	domain
AAA_22	PF13401.1	gi|257053181|ref|YP_003131014.1|	-	3.3e-05	24.0	1.4	0.00082	19.5	1.0	2.4	1	1	0	1	1	1	1	AAA	domain
NB-ARC	PF00931.17	gi|257053181|ref|YP_003131014.1|	-	0.0013	17.6	0.0	0.0017	17.2	0.0	1.2	1	0	0	1	1	1	1	NB-ARC	domain
AAA_29	PF13555.1	gi|257053181|ref|YP_003131014.1|	-	0.017	14.6	0.0	0.029	13.8	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.1	gi|257053181|ref|YP_003131014.1|	-	0.038	13.9	0.3	0.061	13.2	0.2	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
DUF258	PF03193.11	gi|257053181|ref|YP_003131014.1|	-	0.081	12.1	1.7	0.085	12.0	0.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function,	DUF258
Miro	PF08477.8	gi|257053181|ref|YP_003131014.1|	-	0.15	12.5	0.0	0.33	11.4	0.0	1.5	1	0	0	1	1	1	0	Miro-like	protein
PduV-EutP	PF10662.4	gi|257053181|ref|YP_003131014.1|	-	0.15	11.5	0.0	0.24	10.8	0.0	1.3	1	0	0	1	1	1	0	Ethanolamine	utilisation	-	propanediol	utilisation
Rad17	PF03215.10	gi|257053181|ref|YP_003131014.1|	-	0.16	10.6	0.0	0.24	10.0	0.0	1.1	1	0	0	1	1	1	0	Rad17	cell	cycle	checkpoint	protein
ABC_tran	PF00005.22	gi|257053182|ref|YP_003131015.1|	-	9.8e-21	74.4	0.0	1.7e-20	73.7	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.7	gi|257053182|ref|YP_003131015.1|	-	9e-19	67.5	0.1	1.6e-18	66.7	0.1	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.1	gi|257053182|ref|YP_003131015.1|	-	2.3e-08	34.3	2.5	5.7e-07	29.7	1.7	2.1	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|257053182|ref|YP_003131015.1|	-	1.4e-05	24.4	0.1	0.0061	15.8	0.0	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.1	gi|257053182|ref|YP_003131015.1|	-	0.0016	18.6	0.5	0.054	13.6	0.3	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_25	PF13481.1	gi|257053182|ref|YP_003131015.1|	-	0.002	17.5	0.0	0.018	14.4	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_15	PF13175.1	gi|257053182|ref|YP_003131015.1|	-	0.0044	16.1	0.1	0.14	11.1	0.1	2.0	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_16	PF13191.1	gi|257053182|ref|YP_003131015.1|	-	0.0088	16.0	0.0	0.015	15.3	0.0	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
FtsK_SpoIIIE	PF01580.13	gi|257053182|ref|YP_003131015.1|	-	0.019	14.4	0.0	0.038	13.4	0.0	1.4	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
NACHT	PF05729.7	gi|257053182|ref|YP_003131015.1|	-	0.025	14.2	0.0	0.053	13.1	0.0	1.6	1	1	0	1	1	1	0	NACHT	domain
AAA_10	PF12846.2	gi|257053182|ref|YP_003131015.1|	-	0.029	13.8	0.1	0.093	12.1	0.0	1.8	1	1	0	2	2	2	0	AAA-like	domain
DUF87	PF01935.12	gi|257053182|ref|YP_003131015.1|	-	0.034	13.9	0.0	0.066	13.0	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF87
RNA_helicase	PF00910.17	gi|257053182|ref|YP_003131015.1|	-	0.069	13.3	0.0	0.12	12.5	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
AAA_29	PF13555.1	gi|257053182|ref|YP_003131015.1|	-	0.078	12.5	0.0	0.17	11.4	0.0	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
KaiC	PF06745.8	gi|257053182|ref|YP_003131015.1|	-	0.099	11.7	0.0	0.25	10.4	0.0	1.6	1	0	0	1	1	1	0	KaiC
PRK	PF00485.13	gi|257053182|ref|YP_003131015.1|	-	0.12	11.8	0.0	0.17	11.4	0.0	1.3	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
BPD_transp_1	PF00528.17	gi|257053183|ref|YP_003131016.1|	-	6.9e-23	81.1	7.9	6.9e-23	81.1	5.5	1.6	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.17	gi|257053184|ref|YP_003131017.1|	-	6.2e-30	104.0	15.2	6.2e-30	104.0	10.5	1.9	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
HEAT	PF02985.17	gi|257053185|ref|YP_003131018.1|	-	7.7e-15	53.5	20.2	0.0022	17.9	0.2	7.3	7	0	0	7	7	6	4	HEAT	repeat
HEAT_2	PF13646.1	gi|257053185|ref|YP_003131018.1|	-	8.3e-15	54.8	33.3	0.00018	21.7	3.7	4.6	2	2	1	4	4	4	4	HEAT	repeats
Adaptin_N	PF01602.15	gi|257053185|ref|YP_003131018.1|	-	1.1e-12	47.0	0.0	1.6e-09	36.6	0.0	3.4	1	1	0	1	1	1	1	Adaptin	N	terminal	region
Cnd1	PF12717.2	gi|257053185|ref|YP_003131018.1|	-	3.8e-07	30.1	0.0	0.0084	15.9	0.0	3.8	2	2	1	4	4	4	2	non-SMC	mitotic	condensation	complex	subunit	1
HEAT_EZ	PF13513.1	gi|257053185|ref|YP_003131018.1|	-	5.5e-05	23.5	45.5	0.047	14.1	3.2	7.4	2	2	6	8	8	8	5	HEAT-like	repeat
Vac14_Fab1_bd	PF12755.2	gi|257053185|ref|YP_003131018.1|	-	0.0021	18.4	0.0	17	5.9	0.0	4.1	3	1	1	4	4	4	0	Vacuolar	14	Fab1-binding	region
API5	PF05918.6	gi|257053185|ref|YP_003131018.1|	-	0.0028	16.2	3.9	0.69	8.3	0.1	3.7	2	2	1	4	4	4	1	Apoptosis	inhibitory	protein	5	(API5)
HisKA_3	PF07730.8	gi|257053185|ref|YP_003131018.1|	-	0.11	12.9	16.2	0.74	10.2	0.3	5.1	4	1	0	5	5	5	0	Histidine	kinase
CLASP_N	PF12348.3	gi|257053185|ref|YP_003131018.1|	-	0.17	11.2	0.1	9.3	5.5	0.0	2.9	2	1	1	3	3	3	0	CLASP	N	terminal
K-cyclin_vir_C	PF09080.5	gi|257053185|ref|YP_003131018.1|	-	0.57	10.4	7.2	6.2	7.0	0.3	3.1	3	1	1	4	4	3	0	K	cyclin,	C	terminal
Arm	PF00514.18	gi|257053185|ref|YP_003131018.1|	-	1.9	8.4	9.1	4.8	7.1	0.1	4.4	4	1	0	4	4	4	0	Armadillo/beta-catenin-like	repeat
VIT1	PF01988.14	gi|257053187|ref|YP_003131020.1|	-	0.29	10.5	7.5	0.35	10.3	5.2	1.0	1	0	0	1	1	1	0	VIT	family
Cpn60_TCP1	PF00118.19	gi|257053188|ref|YP_003131021.1|	-	3.6e-146	487.5	0.9	4.1e-146	487.4	0.6	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
His_biosynth	PF00977.16	gi|257053189|ref|YP_003131022.1|	-	4.2e-74	248.6	5.1	4.7e-74	248.5	3.6	1.0	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
Dus	PF01207.12	gi|257053189|ref|YP_003131022.1|	-	5.2e-13	48.5	0.2	1.8e-06	27.0	0.0	2.1	2	0	0	2	2	2	2	Dihydrouridine	synthase	(Dus)
DHO_dh	PF01180.16	gi|257053189|ref|YP_003131022.1|	-	1.2e-09	37.5	2.6	1e-05	24.6	0.3	2.2	2	0	0	2	2	2	2	Dihydroorotate	dehydrogenase
PcrB	PF01884.12	gi|257053189|ref|YP_003131022.1|	-	1.3e-09	37.7	5.5	5.8e-06	25.7	0.2	2.3	2	0	0	2	2	2	2	PcrB	family
Trp_syntA	PF00290.15	gi|257053189|ref|YP_003131022.1|	-	3.7e-07	28.9	0.6	0.0087	14.6	0.0	2.3	2	0	0	2	2	2	2	Tryptophan	synthase	alpha	chain
ThiG	PF05690.9	gi|257053189|ref|YP_003131022.1|	-	5.5e-07	28.8	6.5	0.0028	16.7	0.1	2.1	2	0	0	2	2	2	2	Thiazole	biosynthesis	protein	ThiG
NMO	PF03060.10	gi|257053189|ref|YP_003131022.1|	-	6.7e-07	28.7	5.1	6.7e-07	28.7	3.5	2.1	1	1	0	2	2	2	1	Nitronate	monooxygenase
IGPS	PF00218.16	gi|257053189|ref|YP_003131022.1|	-	3.2e-06	26.4	0.6	0.0019	17.3	0.0	2.8	3	1	1	4	4	4	2	Indole-3-glycerol	phosphate	synthase
IMPDH	PF00478.20	gi|257053189|ref|YP_003131022.1|	-	5.8e-06	25.4	4.8	0.0092	14.9	0.4	2.1	2	0	0	2	2	2	2	IMP	dehydrogenase	/	GMP	reductase	domain
FMN_dh	PF01070.13	gi|257053189|ref|YP_003131022.1|	-	0.00022	20.1	10.4	0.0093	14.8	1.9	2.1	2	0	0	2	2	2	2	FMN-dependent	dehydrogenase
NanE	PF04131.9	gi|257053189|ref|YP_003131022.1|	-	0.00039	19.4	2.7	0.18	10.7	0.3	2.4	2	1	0	2	2	2	2	Putative	N-acetylmannosamine-6-phosphate	epimerase
G3P_antiterm	PF04309.7	gi|257053189|ref|YP_003131022.1|	-	0.0013	17.8	2.8	0.071	12.1	0.3	2.2	2	0	0	2	2	2	2	Glycerol-3-phosphate	responsive	antiterminator
B12-binding	PF02310.14	gi|257053189|ref|YP_003131022.1|	-	0.0016	18.2	5.8	0.43	10.4	0.1	2.7	2	1	0	2	2	2	2	B12	binding	domain
Ribul_P_3_epim	PF00834.14	gi|257053189|ref|YP_003131022.1|	-	0.0027	16.8	4.0	0.25	10.4	0.3	2.4	2	0	0	2	2	2	2	Ribulose-phosphate	3	epimerase	family
QRPTase_C	PF01729.14	gi|257053189|ref|YP_003131022.1|	-	0.0032	16.9	1.0	0.44	10.0	0.1	2.2	2	0	0	2	2	2	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
TMP-TENI	PF02581.12	gi|257053189|ref|YP_003131022.1|	-	0.0044	16.1	4.2	0.061	12.4	0.6	2.2	2	0	0	2	2	2	1	Thiamine	monophosphate	synthase/TENI
PA	PF02225.17	gi|257053189|ref|YP_003131022.1|	-	0.25	11.0	1.9	5.2	6.8	0.3	2.5	1	1	1	2	2	2	0	PA	domain
MFS_1	PF07690.11	gi|257053190|ref|YP_003131023.1|	-	5.1e-29	101.0	53.0	1e-22	80.3	16.1	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
IGPD	PF00475.13	gi|257053191|ref|YP_003131024.1|	-	5.3e-62	207.9	1.8	5.3e-62	207.9	1.3	1.4	2	0	0	2	2	2	1	Imidazoleglycerol-phosphate	dehydratase
ACT	PF01842.20	gi|257053192|ref|YP_003131025.1|	-	0.0002	20.7	1.5	0.00043	19.6	0.2	2.3	2	1	0	2	2	2	1	ACT	domain
ACT_7	PF13840.1	gi|257053192|ref|YP_003131025.1|	-	0.001	18.5	0.1	0.0029	17.1	0.0	1.7	2	0	0	2	2	2	1	ACT	domain
DUF4350	PF14258.1	gi|257053192|ref|YP_003131025.1|	-	0.14	12.3	0.7	0.23	11.6	0.1	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4350)
PGI	PF00342.14	gi|257053193|ref|YP_003131026.1|	-	3e-49	167.7	0.0	3.9e-49	167.3	0.0	1.0	1	0	0	1	1	1	1	Phosphoglucose	isomerase
DUF3924	PF13062.1	gi|257053194|ref|YP_003131027.1|	-	0.012	15.4	0.0	0.014	15.2	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3924)
DUF2274	PF10038.4	gi|257053194|ref|YP_003131027.1|	-	0.058	13.5	0.0	0.074	13.1	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2274)
Hamartin	PF04388.7	gi|257053194|ref|YP_003131027.1|	-	0.094	11.3	0.1	0.095	11.3	0.1	1.0	1	0	0	1	1	1	0	Hamartin	protein
DUF1192	PF06698.6	gi|257053194|ref|YP_003131027.1|	-	0.16	11.8	1.0	0.25	11.1	0.7	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1192)
Fer4_15	PF13459.1	gi|257053195|ref|YP_003131028.1|	-	2e-16	60.3	3.7	2.3e-16	60.1	2.6	1.1	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.1	gi|257053195|ref|YP_003131028.1|	-	8.8e-09	35.6	0.8	1.6e-08	34.7	0.5	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_19	PF06902.6	gi|257053195|ref|YP_003131028.1|	-	0.0025	17.6	0.1	0.046	13.5	0.1	2.0	1	1	0	1	1	1	1	Divergent	4Fe-4S	mono-cluster
Fer4	PF00037.22	gi|257053195|ref|YP_003131028.1|	-	0.06	12.9	1.0	2.4	7.9	0.1	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
DEAD	PF00270.24	gi|257053196|ref|YP_003131029.1|	-	3.4e-24	85.2	0.0	8.6e-24	83.9	0.0	1.7	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.26	gi|257053196|ref|YP_003131029.1|	-	2.8e-09	36.7	0.0	1.2e-06	28.2	0.0	2.6	2	0	0	2	2	2	2	Helicase	conserved	C-terminal	domain
HHH_5	PF14520.1	gi|257053196|ref|YP_003131029.1|	-	3.6e-07	30.2	3.5	8.4e-07	29.0	0.8	2.9	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
DNA_pol_lambd_f	PF10391.4	gi|257053196|ref|YP_003131029.1|	-	0.00012	21.5	0.0	0.00038	19.9	0.0	1.9	1	0	0	1	1	1	1	Fingers	domain	of	DNA	polymerase	lambda
HHH	PF00633.18	gi|257053196|ref|YP_003131029.1|	-	0.082	12.6	0.1	0.36	10.6	0.0	2.2	2	0	0	2	2	2	0	Helix-hairpin-helix	motif
CGI-121	PF08617.5	gi|257053197|ref|YP_003131030.1|	-	1.2e-18	67.3	0.0	1.5e-18	67.0	0.0	1.1	1	0	0	1	1	1	1	Kinase	binding	protein	CGI-121
Laminin_G_3	PF13385.1	gi|257053198|ref|YP_003131031.1|	-	3.1e-28	98.9	0.8	6.8e-28	97.8	0.6	1.6	1	0	0	1	1	1	1	Concanavalin	A-like	lectin/glucanases	superfamily
Laminin_G_2	PF02210.19	gi|257053198|ref|YP_003131031.1|	-	0.0035	17.3	0.0	0.008	16.2	0.0	1.6	1	0	0	1	1	1	1	Laminin	G	domain
Sialidase	PF02973.11	gi|257053198|ref|YP_003131031.1|	-	0.045	12.7	0.0	0.086	11.8	0.0	1.4	1	0	0	1	1	1	0	Sialidase,	N-terminal	domain
Filamin	PF00630.14	gi|257053199|ref|YP_003131032.1|	-	3.3e-06	27.5	3.0	0.026	15.0	0.5	4.2	3	1	0	3	3	3	1	Filamin/ABP280	repeat
DUF4198	PF10670.4	gi|257053199|ref|YP_003131032.1|	-	0.00022	21.3	7.8	0.00043	20.3	0.5	3.7	3	1	1	4	4	4	1	Domain	of	unknown	function	(DUF4198)
Big_3_3	PF13750.1	gi|257053199|ref|YP_003131032.1|	-	0.00024	20.5	1.9	0.0017	17.7	0.0	3.3	4	0	0	4	4	4	1	Bacterial	Ig-like	domain	(group	3)
Big_1	PF02369.11	gi|257053199|ref|YP_003131032.1|	-	0.0036	17.1	4.4	0.0036	17.1	3.0	5.3	5	0	0	5	5	5	2	Bacterial	Ig-like	domain	(group	1)
Y_Y_Y	PF07495.8	gi|257053199|ref|YP_003131032.1|	-	0.011	15.4	0.7	2.6	7.8	0.0	3.5	4	0	0	4	4	4	0	Y_Y_Y	domain
DUF3244	PF11589.3	gi|257053199|ref|YP_003131032.1|	-	0.012	15.2	1.0	1.3	8.7	0.0	3.4	4	0	0	4	4	4	0	Domain	of	unknown	function	(DUF3244)
DUF4625	PF15418.1	gi|257053199|ref|YP_003131032.1|	-	0.049	13.7	0.0	24	5.0	0.0	3.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4625)
Glycos_transf_2	PF00535.21	gi|257053200|ref|YP_003131033.1|	-	2.2e-26	92.5	0.0	2.9e-26	92.1	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|257053200|ref|YP_003131033.1|	-	2.6e-09	37.2	0.0	3.8e-09	36.6	0.0	1.3	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
DUF2304	PF10066.4	gi|257053200|ref|YP_003131033.1|	-	0.0024	17.6	1.6	0.0038	17.0	1.1	1.3	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2304)
NTP_transf_3	PF12804.2	gi|257053200|ref|YP_003131033.1|	-	0.01	15.9	0.1	0.016	15.2	0.1	1.3	1	0	0	1	1	1	0	MobA-like	NTP	transferase	domain
Glyco_transf_21	PF13506.1	gi|257053200|ref|YP_003131033.1|	-	0.015	14.5	0.0	0.026	13.8	0.0	1.4	1	0	0	1	1	1	0	Glycosyl	transferase	family	21
SinI	PF08671.5	gi|257053200|ref|YP_003131033.1|	-	0.024	14.0	0.2	0.048	13.1	0.1	1.4	1	0	0	1	1	1	0	Anti-repressor	SinI
Glycos_transf_1	PF00534.15	gi|257053201|ref|YP_003131034.1|	-	5e-37	126.9	0.0	8.7e-37	126.1	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|257053201|ref|YP_003131034.1|	-	1.3e-18	67.4	0.0	2.6e-18	66.4	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.1	gi|257053201|ref|YP_003131034.1|	-	6e-11	42.4	0.0	1.5e-10	41.1	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.1	gi|257053201|ref|YP_003131034.1|	-	1.5e-08	34.9	0.0	5.7e-08	33.0	0.0	1.9	2	0	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_transf_4	PF13439.1	gi|257053201|ref|YP_003131034.1|	-	2e-05	24.3	0.0	7.1e-05	22.5	0.0	2.0	2	1	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_4_2	PF13477.1	gi|257053201|ref|YP_003131034.1|	-	0.021	14.6	0.0	0.036	13.9	0.0	1.3	1	0	0	1	1	1	0	Glycosyl	transferase	4-like
Sulfatase	PF00884.18	gi|257053202|ref|YP_003131035.1|	-	4.1e-42	144.4	0.4	8.3e-42	143.4	0.2	1.5	1	1	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.17	gi|257053202|ref|YP_003131035.1|	-	7.5e-10	38.6	5.3	4.1e-05	23.0	0.1	2.4	2	1	0	2	2	2	2	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF229	PF02995.12	gi|257053202|ref|YP_003131035.1|	-	0.00029	19.3	0.0	0.00076	18.0	0.0	1.6	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF229)
Phosphoesterase	PF04185.9	gi|257053202|ref|YP_003131035.1|	-	0.012	14.8	0.1	1.8	7.6	0.0	2.2	2	0	0	2	2	2	0	Phosphoesterase	family
PglZ	PF08665.7	gi|257053202|ref|YP_003131035.1|	-	0.18	11.4	0.3	11	5.5	0.0	2.6	2	1	0	2	2	2	0	PglZ	domain
Glycos_transf_1	PF00534.15	gi|257053203|ref|YP_003131036.1|	-	3.7e-25	88.3	0.0	5.9e-25	87.6	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|257053203|ref|YP_003131036.1|	-	2.5e-12	47.1	0.0	5.2e-12	46.0	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.1	gi|257053203|ref|YP_003131036.1|	-	6.9e-12	45.7	0.1	1.2e-11	45.0	0.1	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_transf_4	PF13439.1	gi|257053203|ref|YP_003131036.1|	-	2.3e-10	40.4	0.0	4.3e-10	39.5	0.0	1.5	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
ACT_7	PF13840.1	gi|257053203|ref|YP_003131036.1|	-	0.025	14.0	0.0	0.048	13.1	0.0	1.4	1	0	0	1	1	1	0	ACT	domain
Polysacc_synt_C	PF14667.1	gi|257053204|ref|YP_003131037.1|	-	3.2e-24	85.3	19.7	3.2e-24	85.3	13.7	3.3	2	1	2	4	4	4	1	Polysaccharide	biosynthesis	C-terminal	domain
Polysacc_synt	PF01943.12	gi|257053204|ref|YP_003131037.1|	-	2.9e-14	52.9	38.2	3.1e-14	52.8	10.2	2.4	1	1	1	2	2	2	2	Polysaccharide	biosynthesis	protein
Polysacc_synt_3	PF13440.1	gi|257053204|ref|YP_003131037.1|	-	4.6e-13	49.2	20.6	4.6e-13	49.2	14.3	3.0	2	1	1	3	3	3	1	Polysaccharide	biosynthesis	protein
MVIN	PF03023.9	gi|257053204|ref|YP_003131037.1|	-	7.8e-12	44.3	16.0	7.8e-12	44.3	11.1	2.5	2	1	0	2	2	2	1	MviN-like	protein
Potass_KdpF	PF09604.5	gi|257053204|ref|YP_003131037.1|	-	0.071	12.9	4.3	1.4	8.8	2.9	3.5	1	0	0	1	1	1	0	F	subunit	of	K+-transporting	ATPase	(Potass_KdpF)
DUF3311	PF11755.3	gi|257053204|ref|YP_003131037.1|	-	3.4	7.2	11.2	1.7	8.2	2.2	3.8	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3311)
Glycos_transf_2	PF00535.21	gi|257053205|ref|YP_003131038.1|	-	4.7e-25	88.2	0.2	8.3e-25	87.4	0.1	1.5	2	0	0	2	2	2	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|257053205|ref|YP_003131038.1|	-	3.4e-16	59.7	0.0	4.2e-16	59.4	0.0	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.1	gi|257053205|ref|YP_003131038.1|	-	2.6e-08	33.7	0.2	3.8e-08	33.2	0.1	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glyco_tranf_2_5	PF13712.1	gi|257053205|ref|YP_003131038.1|	-	2.1e-07	30.4	0.0	4.3e-07	29.3	0.0	1.5	1	1	1	2	2	2	1	Glycosyltransferase	like	family
Glyco_tranf_2_2	PF10111.4	gi|257053205|ref|YP_003131038.1|	-	1.4e-06	27.6	0.2	1.8e-06	27.2	0.2	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_transf_21	PF13506.1	gi|257053205|ref|YP_003131038.1|	-	0.012	14.9	0.0	0.025	13.8	0.0	1.4	1	1	0	1	1	1	0	Glycosyl	transferase	family	21
zf-C4_ClpX	PF06689.8	gi|257053205|ref|YP_003131038.1|	-	0.036	13.5	2.1	0.064	12.7	1.4	1.4	1	0	0	1	1	1	0	ClpX	C4-type	zinc	finger
Glycos_transf_1	PF00534.15	gi|257053206|ref|YP_003131039.1|	-	8.9e-31	106.6	0.0	1.5e-30	105.8	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|257053206|ref|YP_003131039.1|	-	7.1e-13	48.8	0.0	1.2e-12	48.1	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.1	gi|257053206|ref|YP_003131039.1|	-	5.5e-11	42.5	0.0	1.2e-10	41.4	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.1	gi|257053206|ref|YP_003131039.1|	-	5.6e-08	32.6	0.0	1.8e-07	31.0	0.0	1.8	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.1	gi|257053206|ref|YP_003131039.1|	-	0.00087	19.4	0.0	0.0016	18.6	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
DUF3742	PF12553.3	gi|257053208|ref|YP_003131041.1|	-	0.11	12.9	0.0	0.25	11.8	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3742)
dTDP_sugar_isom	PF00908.12	gi|257053209|ref|YP_003131042.1|	-	1.1e-10	41.1	0.0	1.2e-10	41.0	0.0	1.0	1	0	0	1	1	1	1	dTDP-4-dehydrorhamnose	3,5-epimerase
FdtA	PF05523.6	gi|257053209|ref|YP_003131042.1|	-	0.0027	17.1	0.0	0.0037	16.7	0.0	1.2	1	0	0	1	1	1	1	WxcM-like,	C-terminal
Cupin_2	PF07883.6	gi|257053209|ref|YP_003131042.1|	-	0.036	13.5	1.5	0.38	10.2	1.0	2.2	1	1	0	1	1	1	0	Cupin	domain
NTP_transferase	PF00483.18	gi|257053210|ref|YP_003131043.1|	-	1e-57	195.3	0.0	1.2e-57	195.0	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.2	gi|257053210|ref|YP_003131043.1|	-	1.2e-12	48.1	0.0	1.7e-12	47.7	0.0	1.3	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Hexapep	PF00132.19	gi|257053210|ref|YP_003131043.1|	-	1.5e-07	30.5	3.4	9.2e-05	21.7	0.2	4.0	3	1	1	4	4	4	2	Bacterial	transferase	hexapeptide	(six	repeats)
IspD	PF01128.14	gi|257053210|ref|YP_003131043.1|	-	0.00014	21.4	0.0	0.00027	20.5	0.0	1.5	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Hexapep_2	PF14602.1	gi|257053210|ref|YP_003131043.1|	-	0.001	18.5	3.7	0.042	13.4	0.0	4.3	4	2	0	4	4	4	1	Hexapeptide	repeat	of	succinyl-transferase
IBR	PF01485.16	gi|257053211|ref|YP_003131044.1|	-	0.015	15.1	0.6	0.3	10.9	0.0	2.0	1	1	1	2	2	2	0	IBR	domain
OrfB_Zn_ribbon	PF07282.6	gi|257053211|ref|YP_003131044.1|	-	0.024	14.3	0.5	0.031	13.9	0.3	1.2	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
RNHCP	PF12647.2	gi|257053211|ref|YP_003131044.1|	-	0.033	14.0	0.3	0.039	13.7	0.2	1.1	1	0	0	1	1	1	0	RNHCP	domain
TF_Zn_Ribbon	PF08271.7	gi|257053211|ref|YP_003131044.1|	-	0.049	12.9	0.6	0.12	11.6	0.0	1.9	2	0	0	2	2	2	0	TFIIB	zinc-binding
zf-tcix	PF14952.1	gi|257053211|ref|YP_003131044.1|	-	0.11	11.9	0.2	0.16	11.3	0.1	1.3	1	0	0	1	1	1	0	Putative	treble-clef,	zinc-finger,	Zn-binding
zf-ribbon_3	PF13248.1	gi|257053211|ref|YP_003131044.1|	-	0.56	9.4	2.6	1.6	8.0	1.6	2.0	2	1	0	2	2	2	0	zinc-ribbon	domain
RmlD_sub_bind	PF04321.12	gi|257053212|ref|YP_003131045.1|	-	2.5e-67	226.8	0.0	2.9e-67	226.5	0.0	1.0	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Epimerase	PF01370.16	gi|257053212|ref|YP_003131045.1|	-	4.9e-27	94.8	0.0	6.9e-27	94.4	0.0	1.2	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
NAD_binding_10	PF13460.1	gi|257053212|ref|YP_003131045.1|	-	1.4e-10	41.4	0.1	2.1e-10	40.9	0.0	1.2	1	0	0	1	1	1	1	NADH(P)-binding
NAD_binding_4	PF07993.7	gi|257053212|ref|YP_003131045.1|	-	7.8e-10	38.0	0.1	2.2e-09	36.6	0.0	1.7	2	0	0	2	2	2	1	Male	sterility	protein
Polysacc_synt_2	PF02719.10	gi|257053212|ref|YP_003131045.1|	-	8.2e-08	31.4	0.4	3.8e-06	25.9	0.3	2.7	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
3Beta_HSD	PF01073.14	gi|257053212|ref|YP_003131045.1|	-	2e-07	30.0	0.2	5.6e-07	28.5	0.1	1.8	2	1	0	2	2	2	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Epimerase	PF01370.16	gi|257053213|ref|YP_003131046.1|	-	4.4e-67	225.9	0.0	5.5e-67	225.6	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
RmlD_sub_bind	PF04321.12	gi|257053213|ref|YP_003131046.1|	-	2.1e-24	85.8	0.0	2.5e-24	85.6	0.0	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.14	gi|257053213|ref|YP_003131046.1|	-	1.6e-23	82.7	0.0	2.1e-23	82.4	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.10	gi|257053213|ref|YP_003131046.1|	-	7.8e-22	77.5	0.0	1.6e-20	73.1	0.0	2.0	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.7	gi|257053213|ref|YP_003131046.1|	-	1.1e-18	67.0	0.2	6.2e-18	64.6	0.1	1.9	1	1	0	1	1	1	1	Male	sterility	protein
NAD_binding_10	PF13460.1	gi|257053213|ref|YP_003131046.1|	-	1.8e-11	44.3	0.5	3e-11	43.6	0.2	1.4	1	1	0	1	1	1	1	NADH(P)-binding
adh_short	PF00106.20	gi|257053213|ref|YP_003131046.1|	-	0.00032	20.6	2.3	0.0026	17.7	0.1	2.3	2	0	0	2	2	2	1	short	chain	dehydrogenase
NmrA	PF05368.8	gi|257053213|ref|YP_003131046.1|	-	0.001	18.3	0.0	0.0017	17.6	0.0	1.3	1	0	0	1	1	1	1	NmrA-like	family
KR	PF08659.5	gi|257053213|ref|YP_003131046.1|	-	0.0029	17.2	0.1	0.0091	15.6	0.0	1.8	1	1	0	1	1	1	1	KR	domain
Saccharop_dh	PF03435.13	gi|257053213|ref|YP_003131046.1|	-	0.0033	16.4	0.0	0.005	15.8	0.0	1.4	1	0	0	1	1	1	1	Saccharopine	dehydrogenase
DUF2489	PF10675.4	gi|257053213|ref|YP_003131046.1|	-	0.05	13.2	0.1	3.7	7.2	0.0	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2489)
Pyr_redox_3	PF13738.1	gi|257053213|ref|YP_003131046.1|	-	0.12	12.3	0.0	0.2	11.6	0.0	1.4	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
DapB_N	PF01113.15	gi|257053213|ref|YP_003131046.1|	-	0.15	12.0	0.1	0.35	10.8	0.1	1.7	2	1	0	2	2	2	0	Dihydrodipicolinate	reductase,	N-terminus
PKD	PF00801.15	gi|257053214|ref|YP_003131047.1|	-	4e-20	71.3	25.0	5.7e-11	42.0	1.8	5.7	5	0	0	5	5	5	3	PKD	domain
CARDB	PF07705.6	gi|257053214|ref|YP_003131047.1|	-	1.6e-08	34.4	19.9	0.00032	20.6	0.0	6.1	6	0	0	6	6	6	2	CARDB
Mfa2	PF08842.5	gi|257053215|ref|YP_003131048.1|	-	0.0054	16.1	13.7	0.056	12.8	0.2	4.0	3	1	1	4	4	4	2	Fimbrillin-A	associated	anchor	proteins	Mfa1	and	Mfa2
DUF1310	PF07006.6	gi|257053215|ref|YP_003131048.1|	-	0.11	11.9	1.1	0.3	10.6	0.1	2.2	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1310)
Glyoxalase_2	PF12681.2	gi|257053215|ref|YP_003131048.1|	-	0.17	12.5	1.8	19	5.8	0.0	3.5	3	0	0	3	3	3	0	Glyoxalase-like	domain
DUF4198	PF10670.4	gi|257053216|ref|YP_003131049.1|	-	0.0029	17.6	0.8	0.1	12.5	0.1	2.4	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF4198)
Phosphodiest	PF01663.17	gi|257053217|ref|YP_003131050.1|	-	1.8e-41	142.7	0.0	3.8e-41	141.6	0.0	1.5	1	1	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Peptidase_S8	PF00082.17	gi|257053218|ref|YP_003131051.1|	-	1.5e-16	60.3	5.7	1.1e-11	44.4	0.4	2.7	2	1	0	2	2	2	2	Subtilase	family
TAT_signal	PF10518.4	gi|257053219|ref|YP_003131052.1|	-	0.17	11.9	0.3	0.37	10.9	0.2	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
CarboxypepD_reg	PF13620.1	gi|257053220|ref|YP_003131053.1|	-	1.9e-10	40.6	15.9	7.1e-05	22.7	1.6	3.8	3	0	0	3	3	3	3	Carboxypeptidase	regulatory-like	domain
DUF4480	PF13715.1	gi|257053220|ref|YP_003131053.1|	-	1.2e-06	28.4	1.2	0.00098	19.1	0.1	3.5	2	1	2	4	4	4	2	Domain	of	unknown	function	(DUF4480)
DUF4129	PF13559.1	gi|257053220|ref|YP_003131053.1|	-	1.3e-05	25.0	3.9	1.3e-05	25.0	2.7	3.7	5	0	0	5	5	5	1	Domain	of	unknown	function	(DUF4129)
UTRA	PF07702.8	gi|257053220|ref|YP_003131053.1|	-	0.014	15.0	0.1	0.085	12.4	0.0	2.3	2	0	0	2	2	2	0	UTRA	domain
DUF58	PF01882.13	gi|257053221|ref|YP_003131054.1|	-	1.3e-19	70.1	0.0	3.3e-19	68.8	0.0	1.7	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF58
VWA_2	PF13519.1	gi|257053221|ref|YP_003131054.1|	-	0.0047	17.0	0.0	0.0073	16.4	0.0	1.4	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
Ammonium_transp	PF00909.16	gi|257053222|ref|YP_003131055.1|	-	0.21	9.9	6.8	0.25	9.7	4.7	1.1	1	0	0	1	1	1	0	Ammonium	Transporter	Family
AAA_3	PF07726.6	gi|257053224|ref|YP_003131057.1|	-	4.7e-62	207.3	0.8	1.2e-61	206.0	0.1	1.9	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_5	PF07728.9	gi|257053224|ref|YP_003131057.1|	-	1.2e-18	67.1	0.0	2.7e-18	66.0	0.0	1.6	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
MCM	PF00493.18	gi|257053224|ref|YP_003131057.1|	-	4e-07	29.1	0.3	3.7e-06	25.9	0.0	2.0	1	1	0	2	2	2	1	MCM2/3/5	family
Sigma54_activat	PF00158.21	gi|257053224|ref|YP_003131057.1|	-	9.8e-06	25.1	0.0	0.0002	20.8	0.0	2.4	1	1	0	1	1	1	1	Sigma-54	interaction	domain
RuvB_N	PF05496.7	gi|257053224|ref|YP_003131057.1|	-	0.00015	20.8	0.7	0.00056	19.0	0.1	2.2	2	1	0	2	2	2	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA	PF00004.24	gi|257053224|ref|YP_003131057.1|	-	0.00025	21.2	0.0	0.00075	19.7	0.0	1.9	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Mg_chelatase	PF01078.16	gi|257053224|ref|YP_003131057.1|	-	0.00065	18.9	0.0	0.46	9.6	0.0	2.3	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
AAA_17	PF13207.1	gi|257053224|ref|YP_003131057.1|	-	0.066	14.0	0.1	0.14	12.9	0.1	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_22	PF13401.1	gi|257053224|ref|YP_003131057.1|	-	0.076	13.1	0.0	1.2	9.2	0.0	2.7	2	1	0	2	2	2	0	AAA	domain
AAA_16	PF13191.1	gi|257053224|ref|YP_003131057.1|	-	0.083	12.8	1.4	0.53	10.2	1.0	2.6	1	1	0	1	1	1	0	AAA	ATPase	domain
DUF4350	PF14258.1	gi|257053225|ref|YP_003131058.1|	-	3.5e-07	30.3	0.9	1.2e-06	28.6	0.2	2.3	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4350)
DUF486	PF04342.7	gi|257053225|ref|YP_003131058.1|	-	0.072	13.1	0.1	0.16	11.9	0.0	1.5	2	0	0	2	2	2	0	Protein	of	unknown	function,	DUF486
PhnI	PF05861.7	gi|257053227|ref|YP_003131060.1|	-	0.024	13.1	0.1	0.029	12.9	0.1	1.0	1	0	0	1	1	1	0	Bacterial	phosphonate	metabolism	protein	(PhnI)
AbrB-like	PF14250.1	gi|257053227|ref|YP_003131060.1|	-	0.058	13.3	0.0	0.077	12.9	0.0	1.4	1	1	0	1	1	1	0	AbrB-like	transcriptional	regulator
Apolipoprotein	PF01442.13	gi|257053228|ref|YP_003131061.1|	-	0.0026	17.3	13.8	0.06	12.8	9.6	2.5	1	1	0	1	1	1	1	Apolipoprotein	A1/A4/E	domain
NPV_P10	PF05531.7	gi|257053228|ref|YP_003131061.1|	-	0.0026	17.9	11.2	4.6	7.5	7.5	3.8	1	1	0	1	1	1	0	Nucleopolyhedrovirus	P10	protein
DUF4559	PF15112.1	gi|257053228|ref|YP_003131061.1|	-	0.0043	16.2	4.6	0.0043	16.2	3.2	1.3	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4559)
Baculo_PEP_C	PF04513.7	gi|257053228|ref|YP_003131061.1|	-	0.0045	16.8	6.0	0.83	9.4	0.0	2.9	1	1	2	3	3	3	1	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
FlxA	PF14282.1	gi|257053228|ref|YP_003131061.1|	-	0.0045	16.9	3.5	0.0045	16.9	2.5	2.2	2	0	0	2	2	2	1	FlxA-like	protein
Reo_sigmaC	PF04582.7	gi|257053228|ref|YP_003131061.1|	-	0.0099	15.0	2.6	0.013	14.7	1.8	1.2	1	0	0	1	1	1	1	Reovirus	sigma	C	capsid	protein
AAA_13	PF13166.1	gi|257053228|ref|YP_003131061.1|	-	0.016	13.6	5.5	0.02	13.3	3.8	1.0	1	0	0	1	1	1	0	AAA	domain
Transposase_22	PF02994.9	gi|257053228|ref|YP_003131061.1|	-	0.021	13.3	3.4	0.67	8.3	0.5	2.1	1	1	1	2	2	2	0	L1	transposable	element
Prominin	PF05478.6	gi|257053228|ref|YP_003131061.1|	-	0.034	11.7	3.6	0.038	11.5	2.5	1.1	1	0	0	1	1	1	0	Prominin
PilJ	PF13675.1	gi|257053228|ref|YP_003131061.1|	-	0.038	14.3	9.7	0.17	12.1	2.7	2.4	1	1	1	2	2	2	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
Serine_rich	PF08824.5	gi|257053228|ref|YP_003131061.1|	-	0.041	13.5	4.4	0.2	11.3	0.8	2.7	1	1	1	2	2	2	0	Serine	rich	protein	interaction	domain
DUF3584	PF12128.3	gi|257053228|ref|YP_003131061.1|	-	0.047	11.0	11.8	0.1	9.8	8.2	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
FlaC_arch	PF05377.6	gi|257053228|ref|YP_003131061.1|	-	0.063	13.1	7.0	0.99	9.3	1.6	3.1	3	1	0	3	3	2	0	Flagella	accessory	protein	C	(FlaC)
YtxH	PF12732.2	gi|257053228|ref|YP_003131061.1|	-	0.071	13.4	8.0	13	6.1	5.6	3.1	1	1	0	1	1	1	0	YtxH-like	protein
DUF2783	PF10932.3	gi|257053228|ref|YP_003131061.1|	-	0.08	12.4	0.3	0.55	9.7	0.1	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2783)
Atg14	PF10186.4	gi|257053228|ref|YP_003131061.1|	-	0.11	11.4	1.6	0.71	8.7	0.2	2.0	2	0	0	2	2	2	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
Exonuc_VII_S	PF02609.11	gi|257053228|ref|YP_003131061.1|	-	0.11	12.2	2.5	0.37	10.5	0.0	3.0	3	2	1	4	4	3	0	Exonuclease	VII	small	subunit
Filament	PF00038.16	gi|257053228|ref|YP_003131061.1|	-	0.14	11.5	14.0	0.26	10.7	9.7	1.3	1	1	0	1	1	1	0	Intermediate	filament	protein
COG5	PF10392.4	gi|257053228|ref|YP_003131061.1|	-	0.16	11.9	2.8	6.8	6.6	0.8	2.7	1	1	0	2	2	2	0	Golgi	transport	complex	subunit	5
DUF4404	PF14357.1	gi|257053228|ref|YP_003131061.1|	-	0.18	12.2	13.1	0.21	12.0	3.9	2.9	2	2	0	2	2	2	0	Domain	of	unknown	function	(DUF4404)
Cauli_AT	PF03233.8	gi|257053228|ref|YP_003131061.1|	-	0.18	11.5	0.5	0.31	10.7	0.1	1.5	1	1	1	2	2	2	0	Aphid	transmission	protein
Laminin_I	PF06008.9	gi|257053228|ref|YP_003131061.1|	-	0.18	11.0	10.6	0.85	8.8	7.3	2.0	1	1	0	1	1	1	0	Laminin	Domain	I
ALMT	PF11744.3	gi|257053228|ref|YP_003131061.1|	-	0.19	10.3	0.6	0.29	9.7	0.3	1.5	1	1	0	1	1	1	0	Aluminium	activated	malate	transporter
YjcZ	PF13990.1	gi|257053228|ref|YP_003131061.1|	-	0.2	10.7	6.6	0.82	8.7	1.0	2.0	1	1	1	2	2	2	0	YjcZ-like	protein
DUF883	PF05957.8	gi|257053228|ref|YP_003131061.1|	-	0.23	11.8	12.1	1.9	8.9	3.7	3.0	1	1	2	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF883)
COG2	PF06148.6	gi|257053228|ref|YP_003131061.1|	-	0.27	11.1	9.4	1.9	8.3	1.6	3.4	1	1	2	3	3	3	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Phage_GP20	PF06810.6	gi|257053228|ref|YP_003131061.1|	-	0.45	9.9	8.2	0.19	11.1	3.1	2.1	2	1	0	2	2	2	0	Phage	minor	structural	protein	GP20
Cupin_4	PF08007.7	gi|257053228|ref|YP_003131061.1|	-	0.49	9.5	4.0	0.35	10.0	1.7	1.5	1	1	0	1	1	1	0	Cupin	superfamily	protein
Prefoldin	PF02996.12	gi|257053228|ref|YP_003131061.1|	-	0.53	9.9	9.3	0.074	12.7	1.4	3.0	1	1	1	3	3	3	0	Prefoldin	subunit
Laminin_II	PF06009.7	gi|257053228|ref|YP_003131061.1|	-	0.55	9.9	6.7	0.8	9.4	2.7	2.4	1	1	2	3	3	3	0	Laminin	Domain	II
Phage_GPO	PF05929.6	gi|257053228|ref|YP_003131061.1|	-	0.56	9.4	12.8	0.032	13.5	3.7	1.9	1	1	1	2	2	2	0	Phage	capsid	scaffolding	protein	(GPO)	serine	peptidase
CDC37_N	PF03234.9	gi|257053228|ref|YP_003131061.1|	-	0.62	10.3	7.9	1.7	8.9	5.5	1.7	1	1	0	1	1	1	0	Cdc37	N	terminal	kinase	binding
Spc7	PF08317.6	gi|257053228|ref|YP_003131061.1|	-	0.75	8.3	8.3	0.15	10.7	3.2	1.7	1	1	1	2	2	2	0	Spc7	kinetochore	protein
Phasin	PF05597.6	gi|257053228|ref|YP_003131061.1|	-	0.76	9.5	11.3	96	2.7	6.0	2.9	1	1	0	1	1	1	0	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
MbeD_MobD	PF04899.7	gi|257053228|ref|YP_003131061.1|	-	0.78	9.6	7.4	1.2	9.0	1.4	2.8	2	1	0	2	2	2	0	MbeD/MobD	like
UPF0184	PF03670.8	gi|257053228|ref|YP_003131061.1|	-	0.82	9.8	6.5	4.2	7.6	2.1	2.7	1	1	0	2	2	2	0	Uncharacterised	protein	family	(UPF0184)
TBPIP	PF07106.8	gi|257053228|ref|YP_003131061.1|	-	0.83	9.1	7.5	0.41	10.1	2.3	2.3	1	1	1	2	2	2	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
DUF2730	PF10805.3	gi|257053228|ref|YP_003131061.1|	-	0.91	9.2	3.9	11	5.7	0.3	3.1	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF2730)
DASH_Dam1	PF08653.5	gi|257053228|ref|YP_003131061.1|	-	0.91	9.3	4.1	21	4.9	0.4	2.9	1	1	1	2	2	2	0	DASH	complex	subunit	Dam1
DUF1664	PF07889.7	gi|257053228|ref|YP_003131061.1|	-	1.2	8.9	6.8	1.4	8.7	1.9	2.4	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1664)
DUF848	PF05852.6	gi|257053228|ref|YP_003131061.1|	-	1.4	8.8	12.2	0.64	9.8	3.0	2.5	1	1	2	3	3	3	0	Gammaherpesvirus	protein	of	unknown	function	(DUF848)
HisKA_3	PF07730.8	gi|257053228|ref|YP_003131061.1|	-	1.5	9.2	7.1	0.85	10.0	1.1	3.0	1	1	2	3	3	3	0	Histidine	kinase
Seryl_tRNA_N	PF02403.17	gi|257053228|ref|YP_003131061.1|	-	1.6	8.8	6.9	0.91	9.5	2.1	2.5	1	1	0	2	2	2	0	Seryl-tRNA	synthetase	N-terminal	domain
Fib_alpha	PF08702.5	gi|257053228|ref|YP_003131061.1|	-	1.6	8.8	5.5	0.75	9.9	0.6	2.3	1	1	1	2	2	2	0	Fibrinogen	alpha/beta	chain	family
BLOC1_2	PF10046.4	gi|257053228|ref|YP_003131061.1|	-	1.7	8.8	7.8	11	6.2	1.2	3.3	1	1	2	3	3	3	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
HrpB7	PF09486.5	gi|257053228|ref|YP_003131061.1|	-	1.8	8.4	12.7	0.71	9.7	4.1	2.6	1	1	1	2	2	2	0	Bacterial	type	III	secretion	protein	(HrpB7)
DUF972	PF06156.8	gi|257053228|ref|YP_003131061.1|	-	2	8.8	8.7	1.6	9.0	0.6	3.3	1	1	3	4	4	4	0	Protein	of	unknown	function	(DUF972)
DUF4618	PF15397.1	gi|257053228|ref|YP_003131061.1|	-	2.5	7.3	9.3	0.7	9.1	2.8	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4618)
DUF948	PF06103.6	gi|257053228|ref|YP_003131061.1|	-	3.7	7.4	7.5	1.8	8.4	1.9	2.5	2	1	0	3	3	2	0	Bacterial	protein	of	unknown	function	(DUF948)
Acyl-CoA_dh_C	PF12806.2	gi|257053228|ref|YP_003131061.1|	-	4.3	7.2	10.4	11	5.9	0.9	3.0	2	1	1	3	3	3	0	Acetyl-CoA	dehydrogenase	C-terminal	like
MT0933_antitox	PF14013.1	gi|257053228|ref|YP_003131061.1|	-	5.1	7.2	9.9	0.74	9.9	2.9	2.6	3	1	0	3	3	2	0	MT0933-like	antitoxin	protein
Cytochrom_B562	PF07361.6	gi|257053228|ref|YP_003131061.1|	-	5.6	7.4	8.4	1.2	9.6	2.3	2.2	2	1	0	2	2	2	0	Cytochrome	b562
Spectrin	PF00435.16	gi|257053228|ref|YP_003131061.1|	-	6.2	7.1	15.6	1.1	9.5	4.0	3.0	1	1	2	3	3	3	0	Spectrin	repeat
DUF3138	PF11336.3	gi|257053228|ref|YP_003131061.1|	-	7.6	4.5	6.0	5.7	4.9	1.3	2.2	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3138)
MMPL	PF03176.10	gi|257053228|ref|YP_003131061.1|	-	7.8	5.0	7.6	2	7.0	2.1	1.9	2	0	0	2	2	2	0	MMPL	family
HisKA	PF00512.20	gi|257053228|ref|YP_003131061.1|	-	8.4	6.4	7.8	1.9	8.5	0.8	2.9	3	0	0	3	3	3	0	His	Kinase	A	(phospho-acceptor)	domain
PHA_synth_III_E	PF09712.5	gi|257053229|ref|YP_003131062.1|	-	7.2e-13	48.6	0.4	7.2e-13	48.6	0.2	2.0	1	1	1	2	2	2	1	Poly(R)-hydroxyalkanoic	acid	synthase	subunit	(PHA_synth_III_E)
Phasin	PF05597.6	gi|257053229|ref|YP_003131062.1|	-	0.00091	18.9	4.2	0.0014	18.3	0.2	2.3	1	1	1	2	2	2	1	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
IMD	PF08397.6	gi|257053229|ref|YP_003131062.1|	-	0.017	14.4	0.7	0.56	9.4	0.0	2.8	2	1	1	3	3	3	0	IRSp53/MIM	homology	domain
PAS_8	PF13188.1	gi|257053229|ref|YP_003131062.1|	-	0.27	11.1	1.8	4.6	7.2	0.6	3.2	2	1	0	2	2	2	0	PAS	domain
LXG	PF04740.7	gi|257053229|ref|YP_003131062.1|	-	0.28	10.9	2.9	0.66	9.7	1.1	1.9	1	1	1	2	2	2	0	LXG	domain	of	WXG	superfamily
NYD-SP28	PF14772.1	gi|257053229|ref|YP_003131062.1|	-	0.95	9.5	5.0	0.29	11.2	0.2	2.2	2	1	0	2	2	2	0	Sperm	tail
Abhydrolase_1	PF00561.15	gi|257053230|ref|YP_003131063.1|	-	2.3e-18	66.5	0.0	3.8e-18	65.9	0.0	1.3	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
Abhydrolase_6	PF12697.2	gi|257053230|ref|YP_003131063.1|	-	5e-13	49.4	0.0	1.3e-12	48.0	0.0	1.6	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
DUF3141	PF11339.3	gi|257053230|ref|YP_003131063.1|	-	1.5e-10	40.0	0.1	2.7e-07	29.3	0.2	2.1	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF3141)
PhaC_N	PF07167.8	gi|257053230|ref|YP_003131063.1|	-	1.5e-09	37.5	0.0	2.8e-09	36.6	0.0	1.5	1	0	0	1	1	1	1	Poly-beta-hydroxybutyrate	polymerase	(PhaC)	N-terminus
DLH	PF01738.13	gi|257053230|ref|YP_003131063.1|	-	2.3e-09	36.8	0.1	3.6e-05	23.1	0.0	3.0	3	0	0	3	3	3	2	Dienelactone	hydrolase	family
Abhydrolase_5	PF12695.2	gi|257053230|ref|YP_003131063.1|	-	6.7e-09	35.6	0.0	6.1e-08	32.5	0.0	2.2	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
HHH_5	PF14520.1	gi|257053230|ref|YP_003131063.1|	-	2.1e-06	27.7	1.8	2.2e-06	27.7	0.1	1.9	2	0	0	2	2	1	1	Helix-hairpin-helix	domain
DUF4332	PF14229.1	gi|257053230|ref|YP_003131063.1|	-	0.00012	22.0	0.0	0.00022	21.1	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4332)
PHB_depo_C	PF06850.6	gi|257053230|ref|YP_003131063.1|	-	0.00027	20.2	0.0	0.0005	19.3	0.0	1.4	1	0	0	1	1	1	1	PHB	de-polymerase	C-terminus
DNA_pol_lambd_f	PF10391.4	gi|257053230|ref|YP_003131063.1|	-	0.00061	19.2	0.0	0.002	17.6	0.0	1.8	1	0	0	1	1	1	1	Fingers	domain	of	DNA	polymerase	lambda
FSH1	PF03959.8	gi|257053230|ref|YP_003131063.1|	-	0.00069	19.1	0.0	0.013	14.9	0.0	2.2	2	0	0	2	2	2	1	Serine	hydrolase	(FSH1)
Cdd1	PF11731.3	gi|257053230|ref|YP_003131063.1|	-	0.00077	19.3	0.0	0.0022	17.8	0.0	1.8	1	0	0	1	1	1	1	Pathogenicity	locus
Chlamy_scaf	PF09675.5	gi|257053230|ref|YP_003131063.1|	-	0.006	16.5	0.0	0.016	15.2	0.0	1.6	1	0	0	1	1	1	1	Chlamydia-phage	Chp2	scaffold	(Chlamy_scaf)
BAAT_C	PF08840.6	gi|257053230|ref|YP_003131063.1|	-	0.02	14.5	0.0	0.4	10.3	0.0	2.5	1	1	0	1	1	1	0	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
DUF2048	PF09752.4	gi|257053230|ref|YP_003131063.1|	-	0.028	13.3	0.1	0.059	12.2	0.1	1.4	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2048)
DUF915	PF06028.6	gi|257053230|ref|YP_003131063.1|	-	0.048	12.7	0.0	3.9	6.4	0.0	2.3	2	0	0	2	2	2	0	Alpha/beta	hydrolase	of	unknown	function	(DUF915)
BAF	PF02961.9	gi|257053230|ref|YP_003131063.1|	-	0.06	13.6	0.0	0.17	12.2	0.0	1.7	1	0	0	1	1	1	0	Barrier	to	autointegration	factor
PTRF_SDPR	PF15237.1	gi|257053230|ref|YP_003131063.1|	-	0.22	10.9	0.6	7.1	5.9	1.5	2.0	2	0	0	2	2	2	0	PTRF/SDPR	family
Nitro_FeMo-Co	PF02579.12	gi|257053230|ref|YP_003131063.1|	-	0.27	11.3	1.1	0.6	10.2	0.2	2.0	2	0	0	2	2	2	0	Dinitrogenase	iron-molybdenum	cofactor
TRAP_alpha	PF03896.11	gi|257053230|ref|YP_003131063.1|	-	8.1	5.3	7.8	13	4.6	5.4	1.3	1	0	0	1	1	1	0	Translocon-associated	protein	(TRAP),	alpha	subunit
HTH_19	PF12844.2	gi|257053231|ref|YP_003131064.1|	-	2.4e-14	53.0	0.0	2.7e-14	52.9	0.0	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_3	PF01381.17	gi|257053231|ref|YP_003131064.1|	-	7e-12	45.0	0.0	8.6e-12	44.7	0.0	1.1	1	0	0	1	1	1	1	Helix-turn-helix
HTH_31	PF13560.1	gi|257053231|ref|YP_003131064.1|	-	1.4e-10	41.1	0.0	1.8e-10	40.8	0.0	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_25	PF13413.1	gi|257053231|ref|YP_003131064.1|	-	0.0013	18.2	0.0	0.0017	17.9	0.0	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_26	PF13443.1	gi|257053231|ref|YP_003131064.1|	-	0.0083	16.3	0.0	0.01	16.0	0.0	1.1	1	0	0	1	1	1	1	Cro/C1-type	HTH	DNA-binding	domain
HTH_24	PF13412.1	gi|257053231|ref|YP_003131064.1|	-	0.014	14.8	0.0	0.018	14.4	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_38	PF13936.1	gi|257053231|ref|YP_003131064.1|	-	0.073	12.6	0.0	0.16	11.5	0.0	1.5	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_11	PF08279.7	gi|257053231|ref|YP_003131064.1|	-	0.11	12.1	0.1	0.16	11.6	0.1	1.3	1	0	0	1	1	1	0	HTH	domain
GntR	PF00392.16	gi|257053231|ref|YP_003131064.1|	-	0.13	11.7	0.1	0.3	10.5	0.1	1.6	1	1	1	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
HTH_28	PF13518.1	gi|257053231|ref|YP_003131064.1|	-	0.14	12.1	0.1	0.2	11.6	0.1	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_Crp_2	PF13545.1	gi|257053231|ref|YP_003131064.1|	-	0.15	11.8	0.1	0.25	11.1	0.0	1.3	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
DUF2178	PF09946.4	gi|257053232|ref|YP_003131065.1|	-	2.6e-07	30.3	2.6	4.2e-07	29.6	1.3	1.6	1	1	1	2	2	2	1	Predicted	membrane	protein	(DUF2178)
DUF4401	PF14351.1	gi|257053232|ref|YP_003131065.1|	-	0.0011	18.0	8.9	0.11	11.5	1.7	2.0	1	1	1	2	2	2	2	Domain	of	unknown	function	(DUF4401)
DUF2593	PF10767.4	gi|257053232|ref|YP_003131065.1|	-	0.053	13.2	0.9	0.074	12.7	0.4	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2593)
AzlD	PF05437.7	gi|257053232|ref|YP_003131065.1|	-	0.078	12.9	6.4	0.86	9.5	0.1	2.2	2	0	0	2	2	2	0	Branched-chain	amino	acid	transport	protein	(AzlD)
COX14	PF14880.1	gi|257053232|ref|YP_003131065.1|	-	0.11	12.0	0.7	0.33	10.6	0.0	2.1	2	0	0	2	2	2	0	Cytochrome	oxidase	c	assembly
MARVEL	PF01284.18	gi|257053232|ref|YP_003131065.1|	-	0.2	11.4	4.1	0.18	11.6	1.0	2.1	1	1	1	2	2	2	0	Membrane-associating	domain
YwiC	PF14256.1	gi|257053232|ref|YP_003131065.1|	-	5.5	7.0	10.4	5.4	7.1	2.5	2.2	1	1	0	2	2	2	0	YwiC-like	protein
DUF998	PF06197.8	gi|257053232|ref|YP_003131065.1|	-	7.6	5.7	14.8	0.84	8.9	3.0	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF998)
DUF2721	PF11026.3	gi|257053232|ref|YP_003131065.1|	-	8.4	6.0	10.3	9.2	5.9	0.7	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2721)
MCM	PF00493.18	gi|257053234|ref|YP_003131067.1|	-	7.1e-117	389.9	1.7	4.5e-68	229.4	0.1	3.4	3	0	0	3	3	3	3	MCM2/3/5	family
Intein_splicing	PF14890.1	gi|257053234|ref|YP_003131067.1|	-	1.6e-23	83.1	0.0	4.7e-14	52.0	0.0	4.6	4	1	0	4	4	4	2	Intein	splicing	domain
LAGLIDADG_3	PF14528.1	gi|257053234|ref|YP_003131067.1|	-	1.4e-20	73.3	0.0	4.9e-12	45.9	0.0	2.9	2	0	0	2	2	2	2	LAGLIDADG-like	domain
MCM_N	PF14551.1	gi|257053234|ref|YP_003131067.1|	-	1.3e-17	64.4	0.7	4.9e-17	62.5	0.2	2.2	2	0	0	2	2	2	1	MCM	N-terminal	domain
HTH_3	PF01381.17	gi|257053234|ref|YP_003131067.1|	-	4.4e-16	58.4	0.0	3.1e-07	30.1	0.0	2.8	2	0	0	2	2	2	2	Helix-turn-helix
Hint	PF01079.15	gi|257053234|ref|YP_003131067.1|	-	5.8e-09	35.4	0.0	0.004	16.3	0.0	3.0	3	0	0	3	3	3	2	Hint	module
HTH_19	PF12844.2	gi|257053234|ref|YP_003131067.1|	-	6.6e-09	35.7	0.0	0.00021	21.2	0.0	3.0	2	0	0	2	2	2	2	Helix-turn-helix	domain
HTH_31	PF13560.1	gi|257053234|ref|YP_003131067.1|	-	1.9e-07	31.1	7.8	2.2e-05	24.5	0.5	3.6	3	0	0	3	3	3	2	Helix-turn-helix	domain
E1-E2_ATPase	PF00122.15	gi|257053234|ref|YP_003131067.1|	-	0.0012	17.9	0.0	0.0032	16.5	0.0	1.6	2	0	0	2	2	2	1	E1-E2	ATPase
Mg_chelatase	PF01078.16	gi|257053234|ref|YP_003131067.1|	-	0.0025	17.0	0.0	2.6	7.1	0.0	3.1	3	0	0	3	3	3	2	Magnesium	chelatase,	subunit	ChlI
Hom_end	PF05204.9	gi|257053234|ref|YP_003131067.1|	-	0.0095	15.8	0.0	0.36	10.8	0.0	2.6	2	0	0	2	2	2	1	Homing	endonuclease
Zn-ribbon_8	PF09723.5	gi|257053234|ref|YP_003131067.1|	-	0.3	11.0	2.7	0.71	9.8	1.9	1.6	1	0	0	1	1	1	0	Zinc	ribbon	domain
TFIIB	PF00382.14	gi|257053235|ref|YP_003131068.1|	-	1e-33	114.9	1.8	3.2e-17	62.1	0.1	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.7	gi|257053235|ref|YP_003131068.1|	-	4.3e-10	38.7	1.5	7.2e-10	38.0	1.0	1.4	1	0	0	1	1	1	1	TFIIB	zinc-binding
Cyclin_C	PF02984.14	gi|257053235|ref|YP_003131068.1|	-	0.014	15.3	0.4	1.5	8.7	0.0	2.3	2	0	0	2	2	2	0	Cyclin,	C-terminal	domain
zinc-ribbons_6	PF07191.7	gi|257053235|ref|YP_003131068.1|	-	0.024	14.4	0.2	0.038	13.7	0.1	1.3	1	0	0	1	1	1	0	zinc-ribbons
OrfB_Zn_ribbon	PF07282.6	gi|257053235|ref|YP_003131068.1|	-	0.035	13.7	0.5	0.074	12.7	0.3	1.5	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
HTH_3	PF01381.17	gi|257053235|ref|YP_003131068.1|	-	0.063	13.1	0.0	0.19	11.5	0.0	1.8	1	0	0	1	1	1	0	Helix-turn-helix
Prok-RING_1	PF14446.1	gi|257053235|ref|YP_003131068.1|	-	0.14	11.9	0.5	0.26	11.0	0.4	1.4	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
RB_B	PF01857.15	gi|257053235|ref|YP_003131068.1|	-	0.14	11.6	0.0	0.36	10.3	0.0	1.6	2	0	0	2	2	2	0	Retinoblastoma-associated	protein	B	domain
HIT	PF01230.18	gi|257053236|ref|YP_003131069.1|	-	9.3e-24	83.8	0.1	1.2e-23	83.4	0.1	1.2	1	0	0	1	1	1	1	HIT	domain
DcpS_C	PF11969.3	gi|257053236|ref|YP_003131069.1|	-	3e-13	50.0	0.0	3.7e-13	49.7	0.0	1.1	1	0	0	1	1	1	1	Scavenger	mRNA	decapping	enzyme	C-term	binding
CwfJ_C_1	PF04677.10	gi|257053236|ref|YP_003131069.1|	-	0.016	14.8	0.1	0.033	13.8	0.1	1.6	1	1	0	1	1	1	0	Protein	similar	to	CwfJ	C-terminus	1
PSI_PSAK	PF01241.13	gi|257053238|ref|YP_003131071.1|	-	0.079	12.9	0.3	0.12	12.4	0.2	1.4	1	0	0	1	1	1	0	Photosystem	I	psaG	/	psaK
CstA	PF02554.9	gi|257053238|ref|YP_003131071.1|	-	0.093	11.3	0.8	0.099	11.2	0.6	1.1	1	0	0	1	1	1	0	Carbon	starvation	protein	CstA
DUF4345	PF14248.1	gi|257053238|ref|YP_003131071.1|	-	0.1	12.0	3.8	0.13	11.7	2.6	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4345)
Fst_toxin	PF13955.1	gi|257053238|ref|YP_003131071.1|	-	4.3	7.1	7.7	1.5	8.5	1.1	2.5	2	0	0	2	2	2	0	Toxin	Fst,	type	I	toxin-antitoxin	system
FG-GAP_2	PF14312.1	gi|257053239|ref|YP_003131072.1|	-	6.6e-28	96.4	32.7	1.6e-12	47.2	2.3	6.8	7	0	0	7	7	7	4	FG-GAP	repeat
Lactonase	PF10282.4	gi|257053239|ref|YP_003131072.1|	-	0.019	14.0	0.1	0.076	12.0	0.0	2.0	2	0	0	2	2	2	0	Lactonase,	7-bladed	beta-propeller
DUF2233	PF09992.4	gi|257053239|ref|YP_003131072.1|	-	0.052	13.5	1.6	1.2	9.1	0.1	3.1	2	2	1	3	3	3	0	Predicted	periplasmic	protein	(DUF2233)
DUF1513	PF07433.6	gi|257053239|ref|YP_003131072.1|	-	0.091	11.6	1.7	9.8	4.9	0.0	3.4	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF1513)
DUF2910	PF11139.3	gi|257053240|ref|YP_003131073.1|	-	0.013	14.6	3.9	0.015	14.4	2.7	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2910)
Sdh_cyt	PF01127.17	gi|257053240|ref|YP_003131073.1|	-	0.063	13.1	1.7	0.073	12.9	1.1	1.1	1	0	0	1	1	1	0	Succinate	dehydrogenase/Fumarate	reductase	transmembrane	subunit
COPI_assoc	PF08507.5	gi|257053240|ref|YP_003131073.1|	-	0.085	12.5	0.1	0.1	12.3	0.1	1.1	1	0	0	1	1	1	0	COPI	associated	protein
DUF1469	PF07332.6	gi|257053240|ref|YP_003131073.1|	-	0.16	11.6	6.0	0.23	11.1	4.2	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1469)
DUF973	PF06157.6	gi|257053240|ref|YP_003131073.1|	-	0.18	10.7	1.3	0.19	10.6	0.9	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF973)
DUF308	PF03729.8	gi|257053240|ref|YP_003131073.1|	-	0.87	9.6	7.0	3.2	7.8	5.1	1.6	1	1	0	1	1	1	0	Short	repeat	of	unknown	function	(DUF308)
Radical_SAM	PF04055.16	gi|257053241|ref|YP_003131074.1|	-	0.00013	22.2	0.1	0.00026	21.1	0.0	1.5	1	0	0	1	1	1	1	Radical	SAM	superfamily
DUF2924	PF11149.3	gi|257053242|ref|YP_003131075.1|	-	0.15	12.0	0.7	0.17	11.9	0.5	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2924)
rve_3	PF13683.1	gi|257053242|ref|YP_003131075.1|	-	0.36	10.3	2.4	9.9	5.7	0.2	2.1	1	1	1	2	2	2	0	Integrase	core	domain
CBP4	PF07960.6	gi|257053242|ref|YP_003131075.1|	-	1.6	8.3	6.5	2.2	7.9	4.5	1.2	1	0	0	1	1	1	0	CBP4
VanZ	PF04892.7	gi|257053243|ref|YP_003131076.1|	-	2.9e-08	33.7	3.3	4.5e-08	33.1	2.3	1.3	1	1	0	1	1	1	1	VanZ	like	family
Virul_fac_BrkB	PF03631.10	gi|257053243|ref|YP_003131076.1|	-	0.0012	18.3	9.0	0.0014	18.0	6.2	1.0	1	0	0	1	1	1	1	Virulence	factor	BrkB
DUF95	PF01944.12	gi|257053243|ref|YP_003131076.1|	-	0.067	12.8	1.6	2.5	7.7	0.0	2.3	2	0	0	2	2	2	0	Integral	membrane	protein	DUF95
DUF2809	PF10990.3	gi|257053243|ref|YP_003131076.1|	-	8.5	6.8	8.4	1.1	9.7	0.3	2.7	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF2809)
TGT_C2	PF14810.1	gi|257053244|ref|YP_003131077.1|	-	5.8e-22	77.3	0.0	1.2e-21	76.3	0.0	1.6	1	0	0	1	1	1	1	Patch-forming	domain	C2	of	tRNA-guanine	transglycosylase
TGT	PF01702.13	gi|257053244|ref|YP_003131077.1|	-	1.3e-18	67.2	0.0	2.1e-18	66.4	0.0	1.3	1	0	0	1	1	1	1	Queuine	tRNA-ribosyltransferase
PUA	PF01472.15	gi|257053244|ref|YP_003131077.1|	-	7.7e-13	47.9	0.5	3.2e-12	45.9	0.1	2.2	2	0	0	2	2	2	1	PUA	domain
Sod_Fe_C	PF02777.13	gi|257053245|ref|YP_003131078.1|	-	9.5e-36	121.8	0.1	1.6e-35	121.1	0.1	1.3	1	0	0	1	1	1	1	Iron/manganese	superoxide	dismutases,	C-terminal	domain
Sod_Fe_N	PF00081.17	gi|257053245|ref|YP_003131078.1|	-	1.3e-32	111.8	0.7	2.1e-32	111.1	0.5	1.3	1	0	0	1	1	1	1	Iron/manganese	superoxide	dismutases,	alpha-hairpin	domain
Flavin_Reduct	PF01613.13	gi|257053246|ref|YP_003131079.1|	-	6e-29	100.8	0.0	7.1e-29	100.6	0.0	1.0	1	0	0	1	1	1	1	Flavin	reductase	like	domain
HTH_20	PF12840.2	gi|257053247|ref|YP_003131080.1|	-	1.5e-06	27.8	0.0	3.2e-06	26.8	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
zf-ribbon_3	PF13248.1	gi|257053247|ref|YP_003131080.1|	-	0.012	14.8	1.1	0.25	10.5	0.1	2.5	2	0	0	2	2	2	0	zinc-ribbon	domain
DZR	PF12773.2	gi|257053247|ref|YP_003131080.1|	-	0.15	11.9	3.8	2.3	8.1	0.4	2.6	2	1	0	2	2	2	0	Double	zinc	ribbon
FYVE	PF01363.16	gi|257053247|ref|YP_003131080.1|	-	0.33	10.8	3.1	0.84	9.5	2.1	1.8	1	1	0	1	1	1	0	FYVE	zinc	finger
UPF0547	PF10571.4	gi|257053247|ref|YP_003131080.1|	-	1	9.1	3.8	0.57	9.9	0.4	2.3	2	1	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
TF_Zn_Ribbon	PF08271.7	gi|257053247|ref|YP_003131080.1|	-	1.1	8.6	11.8	2.4	7.5	0.2	3.5	3	0	0	3	3	3	0	TFIIB	zinc-binding
Nudix_N_2	PF14803.1	gi|257053247|ref|YP_003131080.1|	-	2.4	7.9	6.9	30	4.3	0.0	3.6	2	1	0	2	2	2	0	Nudix	N-terminal
Lar_restr_allev	PF14354.1	gi|257053247|ref|YP_003131080.1|	-	4.3	7.7	7.3	19	5.6	0.6	3.0	1	1	0	2	2	2	0	Restriction	alleviation	protein	Lar
TGT	PF01702.13	gi|257053248|ref|YP_003131081.1|	-	3.3e-49	167.3	0.0	4.5e-49	166.8	0.0	1.2	1	0	0	1	1	1	1	Queuine	tRNA-ribosyltransferase
Peptidase_C5	PF00770.13	gi|257053249|ref|YP_003131082.1|	-	0.074	12.6	0.0	0.1	12.1	0.0	1.1	1	0	0	1	1	1	0	Adenovirus	endoprotease
DUF460	PF04312.8	gi|257053250|ref|YP_003131083.1|	-	8.2e-50	167.9	1.4	2.2e-49	166.5	0.4	2.1	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF460)
AAA_13	PF13166.1	gi|257053250|ref|YP_003131083.1|	-	7e-05	21.4	4.9	0.00011	20.8	3.4	1.2	1	0	0	1	1	1	1	AAA	domain
Reo_sigmaC	PF04582.7	gi|257053250|ref|YP_003131083.1|	-	0.0017	17.5	0.4	0.005	16.0	0.1	1.6	1	1	1	2	2	2	1	Reovirus	sigma	C	capsid	protein
Exonuc_VII_L	PF02601.10	gi|257053250|ref|YP_003131083.1|	-	0.0023	17.1	0.5	0.0043	16.3	0.4	1.5	1	0	0	1	1	1	1	Exonuclease	VII,	large	subunit
IncA	PF04156.9	gi|257053250|ref|YP_003131083.1|	-	0.0049	16.4	25.0	0.017	14.7	5.6	3.4	2	1	1	3	3	3	2	IncA	protein
Tropomyosin	PF00261.15	gi|257053250|ref|YP_003131083.1|	-	0.0053	15.8	22.2	0.0053	15.8	15.4	2.7	3	1	0	3	3	3	1	Tropomyosin
DUF641	PF04859.7	gi|257053250|ref|YP_003131083.1|	-	0.0055	16.4	2.6	0.0055	16.4	1.8	3.4	3	1	1	4	4	3	1	Plant	protein	of	unknown	function	(DUF641)
LMBR1	PF04791.11	gi|257053250|ref|YP_003131083.1|	-	0.02	13.5	1.1	0.028	13.0	0.8	1.2	1	0	0	1	1	1	0	LMBR1-like	membrane	protein
DUF1664	PF07889.7	gi|257053250|ref|YP_003131083.1|	-	0.029	14.1	5.8	0.13	12.0	2.8	2.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1664)
NPV_P10	PF05531.7	gi|257053250|ref|YP_003131083.1|	-	0.031	14.5	0.9	1.4	9.2	0.2	3.0	2	0	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
SlyX	PF04102.7	gi|257053250|ref|YP_003131083.1|	-	0.04	14.3	6.9	0.46	10.8	1.4	3.2	1	1	1	2	2	2	0	SlyX
Spc7	PF08317.6	gi|257053250|ref|YP_003131083.1|	-	0.058	12.0	10.3	0.1	11.2	6.6	1.6	1	1	0	1	1	1	0	Spc7	kinetochore	protein
DUF812	PF05667.6	gi|257053250|ref|YP_003131083.1|	-	0.074	11.5	9.6	0.15	10.5	6.7	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF812)
DUF342	PF03961.8	gi|257053250|ref|YP_003131083.1|	-	0.076	11.4	5.1	0.14	10.5	3.6	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF342)
ATG16	PF08614.6	gi|257053250|ref|YP_003131083.1|	-	0.088	12.6	17.8	0.088	12.6	8.3	2.7	1	1	1	2	2	2	0	Autophagy	protein	16	(ATG16)
THOC7	PF05615.8	gi|257053250|ref|YP_003131083.1|	-	0.096	12.9	13.3	0.051	13.8	6.8	2.3	2	0	0	2	2	1	0	Tho	complex	subunit	7
DUF484	PF04340.7	gi|257053250|ref|YP_003131083.1|	-	0.11	12.0	0.0	0.11	12.0	0.0	3.2	2	1	3	5	5	5	0	Protein	of	unknown	function,	DUF484
Ferritin	PF00210.19	gi|257053250|ref|YP_003131083.1|	-	0.13	12.0	0.1	0.13	12.0	0.1	3.4	2	1	0	3	3	2	0	Ferritin-like	domain
BLOC1_2	PF10046.4	gi|257053250|ref|YP_003131083.1|	-	0.15	12.1	7.6	0.33	11.0	0.5	3.0	3	0	0	3	3	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
HrpA_pilin	PF09589.5	gi|257053250|ref|YP_003131083.1|	-	0.16	12.4	0.4	2.2	8.7	0.1	2.8	1	1	1	2	2	2	0	HrpA	pilus	formation	protein
Surfac_D-trimer	PF09006.6	gi|257053250|ref|YP_003131083.1|	-	0.16	11.7	0.2	2.8	7.7	0.0	2.5	2	0	0	2	2	2	0	Lung	surfactant	protein	D	coiled-coil	trimerisation
Prominin	PF05478.6	gi|257053250|ref|YP_003131083.1|	-	0.17	9.4	1.3	0.23	8.9	0.9	1.1	1	0	0	1	1	1	0	Prominin
ADIP	PF11559.3	gi|257053250|ref|YP_003131083.1|	-	0.25	11.2	14.2	3.5	7.5	3.7	2.5	1	1	1	2	2	2	0	Afadin-	and	alpha	-actinin-Binding
Bacillus_HBL	PF05791.6	gi|257053250|ref|YP_003131083.1|	-	0.3	10.4	3.2	0.6	9.4	0.2	2.2	2	0	0	2	2	2	0	Bacillus	haemolytic	enterotoxin	(HBL)
COG5	PF10392.4	gi|257053250|ref|YP_003131083.1|	-	0.38	10.7	4.3	3.3	7.6	0.6	2.3	1	1	1	2	2	2	0	Golgi	transport	complex	subunit	5
Atg14	PF10186.4	gi|257053250|ref|YP_003131083.1|	-	0.48	9.3	15.0	0.42	9.4	4.7	2.0	1	1	1	2	2	2	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
V_ATPase_I	PF01496.14	gi|257053250|ref|YP_003131083.1|	-	0.49	8.1	5.3	0.94	7.2	3.7	1.5	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
YPEB	PF14620.1	gi|257053250|ref|YP_003131083.1|	-	0.49	9.3	3.3	0.88	8.5	2.3	1.4	1	0	0	1	1	1	0	YpeB	sporulation
Fib_alpha	PF08702.5	gi|257053250|ref|YP_003131083.1|	-	0.53	10.3	5.4	2.6	8.1	3.8	2.1	1	1	1	2	2	2	0	Fibrinogen	alpha/beta	chain	family
FimP	PF09766.4	gi|257053250|ref|YP_003131083.1|	-	0.59	9.1	9.8	0.029	13.4	2.6	1.7	1	1	0	1	1	1	0	Fms-interacting	protein
Occludin_ELL	PF07303.8	gi|257053250|ref|YP_003131083.1|	-	0.67	10.7	6.2	7.9	7.2	4.3	2.7	1	1	0	1	1	1	0	Occludin	homology	domain
Spectrin	PF00435.16	gi|257053250|ref|YP_003131083.1|	-	0.72	10.1	20.3	3.5	7.9	1.4	4.5	3	2	1	4	4	4	0	Spectrin	repeat
COG2	PF06148.6	gi|257053250|ref|YP_003131083.1|	-	1.1	9.1	16.5	2.5	7.9	0.1	3.7	4	1	1	5	5	3	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Prefoldin	PF02996.12	gi|257053250|ref|YP_003131083.1|	-	1.5	8.4	10.7	0.47	10.1	0.8	3.1	3	0	0	3	3	3	0	Prefoldin	subunit
FlaC_arch	PF05377.6	gi|257053250|ref|YP_003131083.1|	-	1.9	8.4	6.2	5.4	6.9	0.6	2.8	2	0	0	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
Nucleo_P87	PF07267.6	gi|257053250|ref|YP_003131083.1|	-	2.9	6.4	8.3	4.7	5.7	5.8	1.2	1	0	0	1	1	1	0	Nucleopolyhedrovirus	capsid	protein	P87
Cep57_CLD_2	PF14197.1	gi|257053250|ref|YP_003131083.1|	-	3.6	7.6	21.1	15	5.6	12.4	3.2	1	1	1	2	2	2	0	Centrosome	localisation	domain	of	PPC89
MbeD_MobD	PF04899.7	gi|257053250|ref|YP_003131083.1|	-	4	7.4	7.4	2.1	8.2	0.0	3.1	3	0	0	3	3	2	0	MbeD/MobD	like
Prefoldin_2	PF01920.15	gi|257053250|ref|YP_003131083.1|	-	5.3	6.8	18.9	1	9.1	1.5	4.1	2	1	1	3	3	3	0	Prefoldin	subunit
OmpH	PF03938.9	gi|257053250|ref|YP_003131083.1|	-	5.8	6.8	9.2	1.4	8.8	2.7	2.4	2	0	0	2	2	2	0	Outer	membrane	protein	(OmpH-like)
TMF_DNA_bd	PF12329.3	gi|257053250|ref|YP_003131083.1|	-	6.2	6.7	27.4	0.12	12.2	7.6	3.2	3	1	1	4	4	2	0	TATA	element	modulatory	factor	1	DNA	binding
DivIC	PF04977.10	gi|257053250|ref|YP_003131083.1|	-	6.6	6.2	21.7	0.63	9.5	1.4	3.6	2	1	0	3	3	3	0	Septum	formation	initiator
Polysacc_deac_1	PF01522.16	gi|257053251|ref|YP_003131084.1|	-	3.9e-13	49.1	0.0	8.8e-11	41.5	0.0	2.3	2	0	0	2	2	2	2	Polysaccharide	deacetylase
Glyoxalase	PF00903.20	gi|257053252|ref|YP_003131085.1|	-	2e-17	63.3	0.2	2.3e-17	63.1	0.1	1.0	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_2	PF12681.2	gi|257053252|ref|YP_003131085.1|	-	5.2e-16	59.1	0.5	6e-16	58.9	0.4	1.0	1	0	0	1	1	1	1	Glyoxalase-like	domain
Glyoxalase_4	PF13669.1	gi|257053252|ref|YP_003131085.1|	-	5e-10	39.3	0.4	8.4e-10	38.6	0.3	1.4	1	1	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_3	PF13468.1	gi|257053252|ref|YP_003131085.1|	-	0.12	12.2	0.3	1	9.2	0.2	2.1	1	1	0	1	1	1	0	Glyoxalase-like	domain
HATPase_c	PF02518.21	gi|257053253|ref|YP_003131086.1|	-	5.5e-18	64.7	0.0	9.2e-18	63.9	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.1	gi|257053253|ref|YP_003131086.1|	-	5.7e-09	35.8	0.2	1.3e-08	34.6	0.1	1.7	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
HATPase_c_5	PF14501.1	gi|257053253|ref|YP_003131086.1|	-	8.3e-07	28.6	0.0	1.5e-06	27.8	0.0	1.3	1	0	0	1	1	1	1	GHKL	domain
HisKA	PF00512.20	gi|257053253|ref|YP_003131086.1|	-	0.00025	20.9	0.3	0.00025	20.9	0.2	1.9	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
SPOB_a	PF14689.1	gi|257053253|ref|YP_003131086.1|	-	0.0028	17.1	0.2	0.0054	16.2	0.1	1.6	1	0	0	1	1	1	1	Sensor_kinase_SpoOB-type,	alpha-helical	domain
DUF4244	PF14029.1	gi|257053253|ref|YP_003131086.1|	-	0.079	12.0	1.4	0.24	10.5	1.0	1.8	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4244)
Cas_Cas1	PF01867.11	gi|257053253|ref|YP_003131086.1|	-	0.1	11.6	0.5	0.16	11.0	0.3	1.3	1	1	0	1	1	1	0	CRISPR	associated	protein	Cas1
Lactamase_B_2	PF12706.2	gi|257053254|ref|YP_003131087.1|	-	7.2e-31	107.2	0.0	9.9e-31	106.7	0.0	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.22	gi|257053254|ref|YP_003131087.1|	-	5.3e-15	55.5	0.3	8e-13	48.4	0.0	2.2	2	0	0	2	2	2	2	Metallo-beta-lactamase	superfamily
Lactamase_B_4	PF13691.1	gi|257053254|ref|YP_003131087.1|	-	0.0037	16.6	0.0	0.0065	15.9	0.0	1.3	1	0	0	1	1	1	1	tRNase	Z	endonuclease
ADH_zinc_N	PF00107.21	gi|257053255|ref|YP_003131088.1|	-	6.2e-27	93.7	0.1	1.6e-26	92.4	0.0	1.7	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
ADH_N	PF08240.7	gi|257053255|ref|YP_003131088.1|	-	9.3e-17	60.7	0.1	1.6e-16	60.0	0.0	1.4	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N_2	PF13602.1	gi|257053255|ref|YP_003131088.1|	-	3.8e-10	40.7	0.3	1.2e-09	39.1	0.0	1.9	2	1	0	2	2	2	1	Zinc-binding	dehydrogenase
Peripla_BP_2	PF01497.13	gi|257053256|ref|YP_003131089.1|	-	1.7e-18	66.6	0.1	5.1e-18	65.0	0.0	1.7	2	0	0	2	2	2	1	Periplasmic	binding	protein
TAT_signal	PF10518.4	gi|257053256|ref|YP_003131089.1|	-	0.026	14.5	0.1	0.048	13.6	0.0	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Mucin	PF01456.12	gi|257053256|ref|YP_003131089.1|	-	0.93	9.2	22.2	1.5	8.6	15.4	1.2	1	0	0	1	1	1	0	Mucin-like	glycoprotein
Peripla_BP_2	PF01497.13	gi|257053257|ref|YP_003131090.1|	-	3.2e-18	65.7	0.1	4.4e-18	65.2	0.0	1.2	1	0	0	1	1	1	1	Periplasmic	binding	protein
TAT_signal	PF10518.4	gi|257053257|ref|YP_003131090.1|	-	0.044	13.8	0.2	0.077	13.0	0.1	1.4	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Mucin	PF01456.12	gi|257053257|ref|YP_003131090.1|	-	0.2	11.4	15.1	0.4	10.4	10.5	1.4	1	0	0	1	1	1	0	Mucin-like	glycoprotein
ABC_tran	PF00005.22	gi|257053258|ref|YP_003131091.1|	-	9.5e-30	103.6	0.0	1.3e-29	103.2	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
SMC_N	PF02463.14	gi|257053258|ref|YP_003131091.1|	-	2.4e-12	46.5	0.0	7.5e-07	28.5	0.0	2.1	1	1	1	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_21	PF13304.1	gi|257053258|ref|YP_003131091.1|	-	7.7e-11	42.4	0.7	5.5e-05	23.2	0.1	2.1	1	1	0	2	2	2	2	AAA	domain
AAA_29	PF13555.1	gi|257053258|ref|YP_003131091.1|	-	4.8e-06	26.0	0.1	8.9e-06	25.1	0.0	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.1	gi|257053258|ref|YP_003131091.1|	-	1e-05	25.7	1.2	6.7e-05	23.0	0.9	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_25	PF13481.1	gi|257053258|ref|YP_003131091.1|	-	1.8e-05	24.2	0.8	0.00018	20.9	0.0	2.3	2	1	0	2	2	2	1	AAA	domain
AAA_16	PF13191.1	gi|257053258|ref|YP_003131091.1|	-	3e-05	24.0	4.1	0.00015	21.7	2.8	1.9	1	1	0	1	1	1	1	AAA	ATPase	domain
ABC_ATPase	PF09818.4	gi|257053258|ref|YP_003131091.1|	-	0.00012	20.8	0.4	0.19	10.2	0.0	2.9	2	1	0	2	2	2	2	Predicted	ATPase	of	the	ABC	class
AAA_33	PF13671.1	gi|257053258|ref|YP_003131091.1|	-	0.00018	21.4	0.3	0.00038	20.3	0.2	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_23	PF13476.1	gi|257053258|ref|YP_003131091.1|	-	0.00018	21.8	0.0	0.00022	21.6	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|257053258|ref|YP_003131091.1|	-	0.00035	21.3	0.4	0.0012	19.6	0.2	2.1	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.24	gi|257053258|ref|YP_003131091.1|	-	0.00038	20.6	0.1	0.0016	18.6	0.0	1.9	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_15	PF13175.1	gi|257053258|ref|YP_003131091.1|	-	0.00044	19.4	0.0	0.44	9.5	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
NACHT	PF05729.7	gi|257053258|ref|YP_003131091.1|	-	0.0012	18.5	0.3	0.0025	17.5	0.0	1.6	2	0	0	2	2	2	1	NACHT	domain
Zeta_toxin	PF06414.7	gi|257053258|ref|YP_003131091.1|	-	0.0046	16.0	0.1	0.0088	15.1	0.0	1.4	1	0	0	1	1	1	1	Zeta	toxin
HD_4	PF13328.1	gi|257053258|ref|YP_003131091.1|	-	0.0051	16.5	0.1	0.0084	15.8	0.1	1.3	1	0	0	1	1	1	1	HD	domain
ATP_bind_1	PF03029.12	gi|257053258|ref|YP_003131091.1|	-	0.0062	16.1	0.2	0.47	9.9	0.0	2.1	2	0	0	2	2	2	1	Conserved	hypothetical	ATP	binding	protein
AAA_14	PF13173.1	gi|257053258|ref|YP_003131091.1|	-	0.0093	15.8	0.0	0.029	14.2	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
AAA_10	PF12846.2	gi|257053258|ref|YP_003131091.1|	-	0.01	15.2	0.6	0.027	13.9	0.1	1.8	1	1	0	2	2	2	0	AAA-like	domain
DUF258	PF03193.11	gi|257053258|ref|YP_003131091.1|	-	0.012	14.8	0.0	0.02	14.1	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
MobB	PF03205.9	gi|257053258|ref|YP_003131091.1|	-	0.014	15.0	0.0	0.03	14.0	0.0	1.6	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_19	PF13245.1	gi|257053258|ref|YP_003131091.1|	-	0.021	14.5	0.0	0.05	13.3	0.0	1.6	1	0	0	1	1	1	0	Part	of	AAA	domain
Arch_ATPase	PF01637.13	gi|257053258|ref|YP_003131091.1|	-	0.022	14.4	0.0	0.045	13.4	0.0	1.8	1	1	0	1	1	1	0	Archaeal	ATPase
SbcCD_C	PF13558.1	gi|257053258|ref|YP_003131091.1|	-	0.023	14.6	0.6	0.21	11.5	0.1	2.4	2	1	0	2	2	1	0	Putative	exonuclease	SbcCD,	C	subunit
UPF0079	PF02367.12	gi|257053258|ref|YP_003131091.1|	-	0.025	14.1	0.1	0.052	13.1	0.0	1.4	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_30	PF13604.1	gi|257053258|ref|YP_003131091.1|	-	0.036	13.6	0.3	0.061	12.8	0.2	1.6	1	1	0	1	1	1	0	AAA	domain
cobW	PF02492.14	gi|257053258|ref|YP_003131091.1|	-	0.045	13.1	0.4	0.22	10.9	0.0	2.0	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
NTPase_1	PF03266.10	gi|257053258|ref|YP_003131091.1|	-	0.048	13.3	0.3	0.39	10.4	0.0	2.1	2	0	0	2	2	2	0	NTPase
CobA_CobO_BtuR	PF02572.10	gi|257053258|ref|YP_003131091.1|	-	0.071	12.7	0.4	0.12	11.9	0.3	1.3	1	0	0	1	1	1	0	ATP:corrinoid	adenosyltransferase	BtuR/CobO/CobP
AAA_24	PF13479.1	gi|257053258|ref|YP_003131091.1|	-	0.11	12.0	0.4	0.31	10.5	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
AAA_5	PF07728.9	gi|257053258|ref|YP_003131091.1|	-	0.11	12.2	0.1	0.24	11.1	0.0	1.6	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
MMR_HSR1	PF01926.18	gi|257053258|ref|YP_003131091.1|	-	0.17	11.8	0.6	1	9.3	0.4	2.0	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
NB-ARC	PF00931.17	gi|257053258|ref|YP_003131091.1|	-	0.21	10.4	0.7	1.4	7.6	0.0	2.0	2	0	0	2	2	2	0	NB-ARC	domain
FecCD	PF01032.13	gi|257053259|ref|YP_003131092.1|	-	9e-84	280.9	36.8	1.3e-83	280.4	25.5	1.3	1	0	0	1	1	1	1	FecCD	transport	family
DUF751	PF05421.6	gi|257053259|ref|YP_003131092.1|	-	0.016	15.5	1.3	0.016	15.5	0.9	3.9	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF751)
DAO	PF01266.19	gi|257053260|ref|YP_003131093.1|	-	1.5e-06	27.4	5.8	5.5e-05	22.2	0.3	2.3	2	1	0	2	2	2	2	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.9	gi|257053260|ref|YP_003131093.1|	-	2.7e-06	27.3	0.3	5e-06	26.5	0.2	1.5	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.2	gi|257053260|ref|YP_003131093.1|	-	7e-06	25.3	4.4	0.00013	21.2	0.4	2.1	1	1	1	2	2	2	2	FAD	dependent	oxidoreductase
GIDA	PF01134.17	gi|257053260|ref|YP_003131093.1|	-	1.7e-05	23.8	0.2	2.3e-05	23.4	0.2	1.3	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
FAD_binding_2	PF00890.19	gi|257053260|ref|YP_003131093.1|	-	1.9e-05	23.7	3.0	3e-05	23.0	0.1	2.6	3	0	0	3	3	3	1	FAD	binding	domain
FAD_binding_3	PF01494.14	gi|257053260|ref|YP_003131093.1|	-	4.8e-05	22.5	1.4	8.3e-05	21.7	0.0	2.1	3	1	1	4	4	4	1	FAD	binding	domain
NAD_binding_8	PF13450.1	gi|257053260|ref|YP_003131093.1|	-	0.00019	21.3	0.1	0.0005	20.0	0.0	1.8	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
HI0933_like	PF03486.9	gi|257053260|ref|YP_003131093.1|	-	0.0002	19.9	0.0	0.00052	18.5	0.0	1.6	2	0	0	2	2	2	1	HI0933-like	protein
Thi4	PF01946.12	gi|257053260|ref|YP_003131093.1|	-	0.0099	14.9	0.0	0.017	14.2	0.0	1.3	1	0	0	1	1	1	1	Thi4	family
Pyr_redox	PF00070.22	gi|257053260|ref|YP_003131093.1|	-	0.018	15.4	0.4	0.099	13.0	0.0	2.2	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Lycopene_cycl	PF05834.7	gi|257053260|ref|YP_003131093.1|	-	0.063	12.1	0.1	0.19	10.6	0.0	1.7	2	0	0	2	2	2	0	Lycopene	cyclase	protein
Pyr_redox_3	PF13738.1	gi|257053260|ref|YP_003131093.1|	-	0.15	12.0	0.2	8	6.4	0.1	2.3	1	1	1	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Zip	PF02535.17	gi|257053261|ref|YP_003131094.1|	-	1.1e-19	70.6	15.7	8.8e-16	57.7	6.1	2.2	1	1	0	2	2	2	2	ZIP	Zinc	transporter
PAS_9	PF13426.1	gi|257053262|ref|YP_003131095.1|	-	1.2e-36	125.2	0.3	5.7e-20	71.6	0.0	2.7	2	0	0	2	2	2	2	PAS	domain
PAS	PF00989.19	gi|257053262|ref|YP_003131095.1|	-	5.4e-24	84.1	0.2	7.3e-11	41.8	0.0	2.4	2	0	0	2	2	2	2	PAS	fold
PAS_4	PF08448.5	gi|257053262|ref|YP_003131095.1|	-	2.9e-21	75.5	16.1	2.8e-15	56.2	1.2	3.5	4	0	0	4	4	4	2	PAS	fold
HATPase_c	PF02518.21	gi|257053262|ref|YP_003131095.1|	-	1.2e-14	53.9	0.0	4.1e-14	52.2	0.0	1.8	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_3	PF08447.6	gi|257053262|ref|YP_003131095.1|	-	1e-13	51.1	0.0	6.4e-06	26.1	0.0	2.5	2	0	0	2	2	2	2	PAS	fold
PAS_8	PF13188.1	gi|257053262|ref|YP_003131095.1|	-	2.7e-10	39.7	0.1	0.00061	19.5	0.0	2.9	2	0	0	2	2	2	2	PAS	domain
HATPase_c_2	PF13581.1	gi|257053262|ref|YP_003131095.1|	-	5.8e-10	39.0	0.5	1.6e-09	37.6	0.0	2.0	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
GAF_3	PF13492.1	gi|257053262|ref|YP_003131095.1|	-	2.3e-06	27.7	0.2	1.3e-05	25.3	0.0	2.2	2	0	0	2	2	2	1	GAF	domain
GAF_2	PF13185.1	gi|257053262|ref|YP_003131095.1|	-	3.6e-06	27.5	0.4	6.8e-05	23.3	0.0	3.0	2	1	1	3	3	3	1	GAF	domain
PAS_10	PF13596.1	gi|257053262|ref|YP_003131095.1|	-	9.1e-06	25.9	0.0	0.014	15.6	0.0	2.6	2	0	0	2	2	2	2	PAS	domain
GAF	PF01590.21	gi|257053262|ref|YP_003131095.1|	-	1.8e-05	24.9	1.9	0.012	15.6	0.0	3.0	3	0	0	3	3	3	2	GAF	domain
PAS_11	PF14598.1	gi|257053262|ref|YP_003131095.1|	-	0.007	16.3	0.0	0.014	15.3	0.0	1.5	1	0	0	1	1	1	1	PAS	domain
HATPase_c_3	PF13589.1	gi|257053262|ref|YP_003131095.1|	-	0.04	13.5	0.0	0.077	12.6	0.0	1.4	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.20	gi|257053262|ref|YP_003131095.1|	-	1.4	8.9	7.0	0.24	11.4	0.7	2.9	2	1	0	2	2	2	0	His	Kinase	A	(phospho-acceptor)	domain
TAT_signal	PF10518.4	gi|257053263|ref|YP_003131096.1|	-	0.0033	17.3	2.2	0.0051	16.7	1.5	1.3	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
NigD	PF12667.2	gi|257053263|ref|YP_003131096.1|	-	0.076	12.7	1.1	0.099	12.4	0.8	1.2	1	0	0	1	1	1	0	NigD-like	protein
BPD_transp_2	PF02653.11	gi|257053263|ref|YP_003131096.1|	-	0.077	11.9	0.5	0.11	11.4	0.4	1.1	1	0	0	1	1	1	0	Branched-chain	amino	acid	transport	system	/	permease	component
DUF3620	PF12281.3	gi|257053263|ref|YP_003131096.1|	-	0.13	11.9	0.0	0.18	11.4	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3620)
Fer4_9	PF13187.1	gi|257053264|ref|YP_003131097.1|	-	9.2e-05	22.6	9.5	0.00025	21.2	6.6	1.7	1	1	1	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_11	PF13247.1	gi|257053264|ref|YP_003131097.1|	-	0.00015	21.5	3.4	0.00019	21.2	2.4	1.1	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|257053264|ref|YP_003131097.1|	-	0.00063	19.4	12.8	0.0013	18.4	8.9	1.5	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|257053264|ref|YP_003131097.1|	-	0.0012	19.2	10.9	0.0046	17.3	7.7	1.9	1	1	1	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|257053264|ref|YP_003131097.1|	-	0.0014	18.4	13.1	0.0022	17.8	0.6	2.5	2	1	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|257053264|ref|YP_003131097.1|	-	0.0022	17.8	7.1	0.034	13.9	0.3	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|257053264|ref|YP_003131097.1|	-	0.0038	17.0	12.7	0.018	14.8	0.7	2.8	2	1	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_4	PF12800.2	gi|257053264|ref|YP_003131097.1|	-	0.0044	17.2	2.3	0.0044	17.2	1.6	2.6	2	1	0	2	2	2	1	4Fe-4S	binding	domain
Fer4	PF00037.22	gi|257053264|ref|YP_003131097.1|	-	0.0061	16.1	15.2	0.016	14.7	1.0	3.2	3	0	0	3	3	3	2	4Fe-4S	binding	domain
TIL	PF01826.12	gi|257053264|ref|YP_003131097.1|	-	0.059	13.4	1.6	0.059	13.4	1.1	2.1	1	1	1	2	2	2	0	Trypsin	Inhibitor	like	cysteine	rich	domain
Fer4_13	PF13370.1	gi|257053264|ref|YP_003131097.1|	-	0.18	12.1	0.5	0.18	12.1	0.3	2.3	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_8	PF13183.1	gi|257053264|ref|YP_003131097.1|	-	0.19	11.7	12.8	0.26	11.3	2.0	2.3	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_3	PF12798.2	gi|257053264|ref|YP_003131097.1|	-	0.29	11.7	15.9	1.1	10.0	2.3	2.7	2	1	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_17	PF13534.1	gi|257053264|ref|YP_003131097.1|	-	0.31	11.4	13.0	30	5.0	9.0	2.7	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|257053264|ref|YP_003131097.1|	-	4.8	7.9	12.0	18	6.1	1.4	2.7	1	1	2	3	3	3	0	4Fe-4S	double	cluster	binding	domain
Fer4_18	PF13746.1	gi|257053264|ref|YP_003131097.1|	-	5.9	7.3	11.0	3	8.3	0.9	2.3	2	1	0	2	2	2	0	4Fe-4S	dicluster	domain
DAO	PF01266.19	gi|257053265|ref|YP_003131098.1|	-	1.4e-18	66.9	2.8	1.6e-10	40.4	0.6	2.3	1	1	1	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.19	gi|257053265|ref|YP_003131098.1|	-	4.1e-14	52.2	2.2	1.3e-08	34.1	0.0	3.1	3	0	0	3	3	3	2	FAD	binding	domain
FAD_oxidored	PF12831.2	gi|257053265|ref|YP_003131098.1|	-	6.6e-10	38.6	0.2	1e-09	37.9	0.1	1.3	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.9	gi|257053265|ref|YP_003131098.1|	-	4.9e-09	35.1	0.1	1.2e-08	33.8	0.1	1.6	1	1	0	1	1	1	1	HI0933-like	protein
Thi4	PF01946.12	gi|257053265|ref|YP_003131098.1|	-	6.1e-09	35.3	0.0	2.4e-06	26.7	0.0	2.3	2	0	0	2	2	2	2	Thi4	family
Pyr_redox_2	PF07992.9	gi|257053265|ref|YP_003131098.1|	-	6.9e-09	35.8	0.0	1.2e-08	35.0	0.0	1.4	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.17	gi|257053265|ref|YP_003131098.1|	-	6.3e-08	31.8	0.2	1.8e-07	30.3	0.1	1.7	1	1	0	1	1	1	1	Glucose	inhibited	division	protein	A
FAD_binding_3	PF01494.14	gi|257053265|ref|YP_003131098.1|	-	3e-07	29.8	8.5	3.1e-06	26.5	5.9	2.2	1	1	0	1	1	1	1	FAD	binding	domain
Pyr_redox_3	PF13738.1	gi|257053265|ref|YP_003131098.1|	-	6.7e-07	29.5	0.3	1.9e-06	28.0	0.2	1.8	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.1	gi|257053265|ref|YP_003131098.1|	-	1.1e-06	28.5	0.0	7.3e-06	25.9	0.0	2.4	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox	PF00070.22	gi|257053265|ref|YP_003131098.1|	-	0.0015	18.8	0.7	0.2	12.0	0.3	2.7	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Lycopene_cycl	PF05834.7	gi|257053265|ref|YP_003131098.1|	-	0.0018	17.2	0.5	0.0057	15.6	0.3	1.8	1	1	0	1	1	1	1	Lycopene	cyclase	protein
Trp_halogenase	PF04820.9	gi|257053265|ref|YP_003131098.1|	-	0.012	14.2	0.3	2.3	6.7	0.0	2.2	1	1	1	2	2	2	0	Tryptophan	halogenase
GMC_oxred_N	PF00732.14	gi|257053265|ref|YP_003131098.1|	-	0.022	13.8	0.0	1.5	7.8	0.0	2.2	2	0	0	2	2	2	0	GMC	oxidoreductase
3HCDH_N	PF02737.13	gi|257053265|ref|YP_003131098.1|	-	0.027	14.1	0.3	0.057	13.0	0.2	1.5	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ETF	PF01012.16	gi|257053266|ref|YP_003131099.1|	-	4.5e-41	140.2	0.1	1e-40	139.1	0.0	1.6	2	0	0	2	2	2	1	Electron	transfer	flavoprotein	domain
ETF_alpha	PF00766.14	gi|257053266|ref|YP_003131099.1|	-	1.5e-32	111.0	0.1	2.9e-32	110.1	0.1	1.5	1	0	0	1	1	1	1	Electron	transfer	flavoprotein	FAD-binding	domain
Spore_YhcN_YlaJ	PF09580.5	gi|257053266|ref|YP_003131099.1|	-	0.68	10.0	2.6	2.9	7.9	0.9	2.3	2	1	0	2	2	2	0	Sporulation	lipoprotein	YhcN/YlaJ	(Spore_YhcN_YlaJ)
ETF	PF01012.16	gi|257053267|ref|YP_003131100.1|	-	4.9e-35	120.6	3.0	6.9e-35	120.1	2.1	1.2	1	0	0	1	1	1	1	Electron	transfer	flavoprotein	domain
GYD	PF08734.6	gi|257053268|ref|YP_003131101.1|	-	9.6e-29	98.9	0.0	1.1e-28	98.8	0.0	1.0	1	0	0	1	1	1	1	GYD	domain
OrfB_IS605	PF01385.14	gi|257053269|ref|YP_003131102.1|	-	1.1e-29	103.4	1.0	2e-29	102.5	0.7	1.4	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.6	gi|257053269|ref|YP_003131102.1|	-	1.2e-22	79.2	0.2	2.3e-22	78.4	0.1	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
HTH_OrfB_IS605	PF12323.3	gi|257053269|ref|YP_003131102.1|	-	1.5e-12	46.6	0.5	3.3e-12	45.5	0.3	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
DZR	PF12773.2	gi|257053269|ref|YP_003131102.1|	-	0.011	15.4	0.9	0.022	14.5	0.6	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
Zn_Tnp_IS91	PF14319.1	gi|257053269|ref|YP_003131102.1|	-	0.027	13.9	0.3	0.062	12.8	0.2	1.7	1	0	0	1	1	1	0	Transposase	zinc-binding	domain
DUF3490	PF11995.3	gi|257053269|ref|YP_003131102.1|	-	0.046	13.2	2.1	0.087	12.3	0.4	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3490)
HhH-GPD	PF00730.20	gi|257053269|ref|YP_003131102.1|	-	0.081	13.2	0.1	0.21	11.8	0.1	1.7	1	0	0	1	1	1	0	HhH-GPD	superfamily	base	excision	DNA	repair	protein
Rapamycin_bind	PF08771.6	gi|257053269|ref|YP_003131102.1|	-	0.092	12.8	0.4	2.4	8.2	0.0	3.0	3	1	1	4	4	4	0	Rapamycin	binding	domain
zf-ribbon_3	PF13248.1	gi|257053269|ref|YP_003131102.1|	-	0.11	11.7	5.4	0.91	8.8	0.3	2.2	1	1	1	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|257053269|ref|YP_003131102.1|	-	0.55	9.7	3.0	15	5.2	0.1	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
UPF0547	PF10571.4	gi|257053269|ref|YP_003131102.1|	-	0.55	9.9	4.6	4.4	7.0	3.3	2.2	1	1	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
RNA_POL_M_15KD	PF02150.11	gi|257053269|ref|YP_003131102.1|	-	0.7	9.6	3.1	20	4.9	0.1	2.9	3	0	0	3	3	3	0	RNA	polymerases	M/15	Kd	subunit
Y1_Tnp	PF01797.11	gi|257053270|ref|YP_003131103.1|	-	5.7e-38	129.4	0.1	6.5e-38	129.3	0.0	1.0	1	0	0	1	1	1	1	Transposase	IS200	like
T2SM	PF04612.7	gi|257053270|ref|YP_003131103.1|	-	0.048	13.4	0.0	0.064	13.0	0.0	1.1	1	0	0	1	1	1	0	Type	II	secretion	system	(T2SS),	protein	M
HATPase_c	PF02518.21	gi|257053271|ref|YP_003131104.1|	-	3.5e-16	58.8	0.0	8.1e-16	57.7	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.20	gi|257053271|ref|YP_003131104.1|	-	1.2e-09	38.0	0.1	2.4e-09	37.0	0.1	1.6	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_4	PF08448.5	gi|257053271|ref|YP_003131104.1|	-	1.2e-09	38.1	0.1	8e-09	35.5	0.0	2.5	3	1	0	3	3	3	1	PAS	fold
HATPase_c_2	PF13581.1	gi|257053271|ref|YP_003131104.1|	-	1.8e-07	31.0	0.0	5.2e-06	26.2	0.0	2.5	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
HATPase_c_3	PF13589.1	gi|257053271|ref|YP_003131104.1|	-	0.023	14.3	0.0	0.05	13.2	0.0	1.5	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
DUF359	PF04019.7	gi|257053272|ref|YP_003131105.1|	-	1.2e-33	115.0	0.0	1.6e-33	114.6	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF359)
Spt4	PF06093.8	gi|257053273|ref|YP_003131106.1|	-	4.4e-14	52.1	0.2	5.1e-14	51.9	0.1	1.1	1	0	0	1	1	1	1	Spt4/RpoE2	zinc	finger
DZR	PF12773.2	gi|257053273|ref|YP_003131106.1|	-	0.0044	16.8	0.8	0.006	16.3	0.6	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-ribbon_3	PF13248.1	gi|257053273|ref|YP_003131106.1|	-	0.013	14.7	1.1	0.018	14.2	0.7	1.3	1	0	0	1	1	1	0	zinc-ribbon	domain
NOB1_Zn_bind	PF08772.6	gi|257053273|ref|YP_003131106.1|	-	0.029	14.1	0.4	0.03	14.1	0.3	1.2	1	1	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
stn_TNFRSF12A	PF12191.3	gi|257053273|ref|YP_003131106.1|	-	0.075	13.0	0.2	0.075	13.0	0.1	1.2	1	0	0	1	1	1	0	Tumour	necrosis	factor	receptor	stn_TNFRSF12A_TNFR	domain
HypA	PF01155.14	gi|257053273|ref|YP_003131106.1|	-	0.11	12.2	0.4	0.12	12.0	0.3	1.2	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
TF_Zn_Ribbon	PF08271.7	gi|257053273|ref|YP_003131106.1|	-	0.15	11.4	2.3	0.36	10.1	1.6	1.7	1	1	0	1	1	1	0	TFIIB	zinc-binding
Nudix_N_2	PF14803.1	gi|257053273|ref|YP_003131106.1|	-	0.15	11.7	8.3	1.7	8.4	1.8	2.2	1	1	1	2	2	2	0	Nudix	N-terminal
DNA_RNApol_7kD	PF03604.8	gi|257053273|ref|YP_003131106.1|	-	0.15	11.5	2.0	0.3	10.5	1.4	1.5	1	1	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
A2L_zn_ribbon	PF08792.5	gi|257053273|ref|YP_003131106.1|	-	0.16	11.4	1.8	13	5.4	0.1	2.3	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
RRN7	PF11781.3	gi|257053273|ref|YP_003131106.1|	-	0.48	9.9	4.5	1.3	8.6	1.0	2.2	2	0	0	2	2	2	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
Zn-ribbon_8	PF09723.5	gi|257053273|ref|YP_003131106.1|	-	1.2	9.1	5.4	5.8	6.9	3.7	1.9	1	1	0	1	1	1	0	Zinc	ribbon	domain
ADK_lid	PF05191.9	gi|257053273|ref|YP_003131106.1|	-	1.9	8.2	5.2	25	4.6	3.6	2.1	1	1	0	1	1	1	0	Adenylate	kinase,	active	site	lid
S1	PF00575.18	gi|257053274|ref|YP_003131107.1|	-	2.2e-15	56.4	0.2	2.2e-15	56.4	0.2	1.7	2	0	0	2	2	2	1	S1	RNA	binding	domain
SHS2_Rpb7-N	PF03876.12	gi|257053274|ref|YP_003131107.1|	-	2.3e-15	56.4	0.1	3.7e-15	55.8	0.1	1.3	1	0	0	1	1	1	1	SHS2	domain	found	in	N	terminus	of	Rpb7p/Rpc25p/MJ0397
PIN_4	PF13638.1	gi|257053275|ref|YP_003131108.1|	-	8.6e-07	29.1	0.0	2.9e-06	27.4	0.0	1.7	1	1	1	2	2	2	1	PIN	domain
Fcf1	PF04900.7	gi|257053275|ref|YP_003131108.1|	-	1.2e-05	25.2	0.0	1.6e-05	24.9	0.0	1.1	1	0	0	1	1	1	1	Fcf1
DUF188	PF02639.9	gi|257053275|ref|YP_003131108.1|	-	0.0012	18.2	0.2	0.0019	17.6	0.2	1.3	1	0	0	1	1	1	1	Uncharacterized	BCR,	YaiI/YqxD	family	COG1671
PIN	PF01850.16	gi|257053275|ref|YP_003131108.1|	-	0.033	14.5	0.3	0.046	14.0	0.2	1.3	1	0	0	1	1	1	0	PIN	domain
DUF2088	PF09861.4	gi|257053275|ref|YP_003131108.1|	-	0.092	11.7	0.0	0.16	10.9	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF2088)
GTP_EFTU	PF00009.22	gi|257053276|ref|YP_003131109.1|	-	4.7e-42	143.5	0.2	6.8e-42	143.0	0.1	1.2	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
eIF2_C	PF09173.6	gi|257053276|ref|YP_003131109.1|	-	1.1e-26	92.6	0.0	2.1e-26	91.7	0.0	1.5	1	0	0	1	1	1	1	Initiation	factor	eIF2	gamma,	C	terminal
GTP_EFTU_D2	PF03144.20	gi|257053276|ref|YP_003131109.1|	-	3.8e-06	26.9	0.9	1.2e-05	25.3	0.6	1.9	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.18	gi|257053276|ref|YP_003131109.1|	-	0.0015	18.4	0.0	0.0028	17.5	0.0	1.5	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
Miro	PF08477.8	gi|257053276|ref|YP_003131109.1|	-	0.013	15.9	0.0	0.04	14.3	0.0	1.9	1	1	0	1	1	1	0	Miro-like	protein
SRPRB	PF09439.5	gi|257053276|ref|YP_003131109.1|	-	0.015	14.4	0.1	0.46	9.6	0.0	2.2	1	1	0	1	1	1	0	Signal	recognition	particle	receptor	beta	subunit
Dynamin_N	PF00350.18	gi|257053276|ref|YP_003131109.1|	-	0.023	14.5	0.1	0.13	12.1	0.0	2.1	1	1	0	2	2	2	0	Dynamin	family
PduV-EutP	PF10662.4	gi|257053276|ref|YP_003131109.1|	-	0.026	14.0	0.6	0.43	10.0	0.0	2.2	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
FeoB_N	PF02421.13	gi|257053276|ref|YP_003131109.1|	-	0.055	12.7	0.6	5.6	6.2	0.0	2.4	2	1	0	2	2	2	0	Ferrous	iron	transport	protein	B
MS_channel	PF00924.13	gi|257053277|ref|YP_003131110.1|	-	1.2e-14	54.2	3.5	1.8e-14	53.5	2.4	1.3	1	0	0	1	1	1	1	Mechanosensitive	ion	channel
TM_helix	PF05552.7	gi|257053277|ref|YP_003131110.1|	-	0.00034	20.2	0.4	0.00034	20.2	0.3	2.8	2	1	1	3	3	3	1	Conserved	TM	helix
FLgD_tudor	PF13861.1	gi|257053277|ref|YP_003131110.1|	-	0.074	13.0	0.0	0.16	11.9	0.0	1.6	1	1	0	1	1	1	0	FlgD	Tudor-like	domain
Polysacc_synt_C	PF14667.1	gi|257053279|ref|YP_003131112.1|	-	0.00093	19.0	0.9	0.001	18.8	0.7	1.0	1	0	0	1	1	1	1	Polysaccharide	biosynthesis	C-terminal	domain
Glycos_trans_3N	PF02885.12	gi|257053279|ref|YP_003131112.1|	-	0.074	12.6	0.1	0.11	12.0	0.1	1.4	1	0	0	1	1	1	0	Glycosyl	transferase	family,	helical	bundle	domain
DUF4233	PF14017.1	gi|257053279|ref|YP_003131112.1|	-	0.11	12.4	3.3	0.37	10.7	2.6	1.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4233)
DUF3040	PF11239.3	gi|257053279|ref|YP_003131112.1|	-	0.16	12.0	1.3	0.18	11.8	0.9	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3040)
DUF1129	PF06570.6	gi|257053279|ref|YP_003131112.1|	-	0.18	11.1	0.5	0.21	10.8	0.3	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1129)
Lactamase_B_2	PF12706.2	gi|257053280|ref|YP_003131113.1|	-	2.1e-20	73.1	0.1	3.6e-20	72.3	0.1	1.3	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.22	gi|257053280|ref|YP_003131113.1|	-	1.7e-12	47.4	3.4	3e-12	46.6	2.3	1.5	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_3	PF13483.1	gi|257053280|ref|YP_003131113.1|	-	0.003	17.2	0.1	0.0059	16.3	0.0	1.5	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Aldo_ket_red	PF00248.16	gi|257053281|ref|YP_003131114.1|	-	6.8e-63	212.1	0.0	8.7e-63	211.7	0.0	1.1	1	0	0	1	1	1	1	Aldo/keto	reductase	family
PHBC_N	PF12551.3	gi|257053281|ref|YP_003131114.1|	-	0.011	15.2	0.1	0.027	13.9	0.0	1.6	1	0	0	1	1	1	0	Poly-beta-hydroxybutyrate	polymerase	N	terminal
LacI	PF00356.16	gi|257053281|ref|YP_003131114.1|	-	0.074	12.6	0.0	0.13	11.8	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	lacI	family
HTH_28	PF13518.1	gi|257053281|ref|YP_003131114.1|	-	0.13	12.2	0.0	0.25	11.3	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
AAA	PF00004.24	gi|257053282|ref|YP_003131115.1|	-	1.3e-38	132.1	0.0	3.2e-38	130.9	0.0	1.7	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_17	PF13207.1	gi|257053282|ref|YP_003131115.1|	-	1.4e-07	32.3	3.2	7.7e-07	29.9	0.0	3.0	2	1	0	2	2	2	1	AAA	domain
AAA_5	PF07728.9	gi|257053282|ref|YP_003131115.1|	-	7e-07	29.0	0.1	5.5e-06	26.1	0.0	2.6	2	1	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA_16	PF13191.1	gi|257053282|ref|YP_003131115.1|	-	3.7e-05	23.8	4.7	0.00046	20.2	1.1	3.7	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_18	PF13238.1	gi|257053282|ref|YP_003131115.1|	-	8.1e-05	22.9	0.7	0.00093	19.5	0.0	2.5	2	0	0	2	2	2	1	AAA	domain
AAA_33	PF13671.1	gi|257053282|ref|YP_003131115.1|	-	0.00012	22.0	0.0	0.00029	20.7	0.0	1.8	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|257053282|ref|YP_003131115.1|	-	0.00016	21.8	0.4	0.0034	17.5	0.0	2.7	2	1	0	2	2	2	1	AAA	domain
RuvB_N	PF05496.7	gi|257053282|ref|YP_003131115.1|	-	0.00072	18.6	0.0	0.0017	17.4	0.0	1.7	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_28	PF13521.1	gi|257053282|ref|YP_003131115.1|	-	0.00079	19.4	0.1	0.0025	17.7	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
TIP49	PF06068.8	gi|257053282|ref|YP_003131115.1|	-	0.0011	17.7	0.0	0.0025	16.6	0.0	1.6	1	0	0	1	1	1	1	TIP49	C-terminus
IstB_IS21	PF01695.12	gi|257053282|ref|YP_003131115.1|	-	0.0015	17.9	0.0	0.0044	16.4	0.0	1.8	1	1	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_2	PF07724.9	gi|257053282|ref|YP_003131115.1|	-	0.0017	18.2	0.0	0.005	16.7	0.0	1.8	1	0	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
MMR_HSR1	PF01926.18	gi|257053282|ref|YP_003131115.1|	-	0.0027	17.6	0.0	0.0075	16.2	0.0	1.8	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
SKI	PF01202.17	gi|257053282|ref|YP_003131115.1|	-	0.0049	16.7	0.0	0.013	15.4	0.0	1.7	1	0	0	1	1	1	1	Shikimate	kinase
AAA_19	PF13245.1	gi|257053282|ref|YP_003131115.1|	-	0.005	16.5	0.0	0.011	15.5	0.0	1.6	1	0	0	1	1	1	1	Part	of	AAA	domain
DUF815	PF05673.8	gi|257053282|ref|YP_003131115.1|	-	0.0054	15.6	0.0	0.009	14.9	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
AAA_25	PF13481.1	gi|257053282|ref|YP_003131115.1|	-	0.0066	15.8	0.4	0.02	14.2	0.0	2.1	2	1	1	3	3	2	1	AAA	domain
T2SE	PF00437.15	gi|257053282|ref|YP_003131115.1|	-	0.0066	15.3	0.0	0.013	14.4	0.0	1.4	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
Cytidylate_kin2	PF13189.1	gi|257053282|ref|YP_003131115.1|	-	0.0096	15.8	0.0	0.024	14.5	0.0	1.6	1	0	0	1	1	1	1	Cytidylate	kinase-like	family
Mg_chelatase	PF01078.16	gi|257053282|ref|YP_003131115.1|	-	0.011	14.8	0.0	0.022	13.8	0.0	1.5	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
Sigma54_activ_2	PF14532.1	gi|257053282|ref|YP_003131115.1|	-	0.015	15.3	0.0	0.04	13.9	0.0	1.7	2	0	0	2	2	1	0	Sigma-54	interaction	domain
ABC_tran	PF00005.22	gi|257053282|ref|YP_003131115.1|	-	0.02	15.1	0.0	0.059	13.6	0.0	1.8	2	0	0	2	2	1	0	ABC	transporter
AAA_3	PF07726.6	gi|257053282|ref|YP_003131115.1|	-	0.021	14.4	0.0	0.042	13.4	0.0	1.6	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
NACHT	PF05729.7	gi|257053282|ref|YP_003131115.1|	-	0.035	13.7	0.2	2.6	7.6	0.0	2.9	2	1	1	3	3	3	0	NACHT	domain
ResIII	PF04851.10	gi|257053282|ref|YP_003131115.1|	-	0.04	13.7	0.0	0.071	12.9	0.0	1.5	1	0	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
AAA_11	PF13086.1	gi|257053282|ref|YP_003131115.1|	-	0.041	13.4	0.0	0.094	12.2	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_14	PF13173.1	gi|257053282|ref|YP_003131115.1|	-	0.045	13.6	0.0	0.15	11.9	0.0	1.9	1	0	0	1	1	1	0	AAA	domain
RNA_helicase	PF00910.17	gi|257053282|ref|YP_003131115.1|	-	0.049	13.8	0.0	0.12	12.5	0.0	1.7	1	0	0	1	1	1	0	RNA	helicase
Zeta_toxin	PF06414.7	gi|257053282|ref|YP_003131115.1|	-	0.069	12.2	0.0	0.14	11.1	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
AAA_24	PF13479.1	gi|257053282|ref|YP_003131115.1|	-	0.096	12.2	0.0	0.25	10.9	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
SAICAR_synt	PF01259.13	gi|257053283|ref|YP_003131116.1|	-	8.6e-18	64.3	0.0	4.1e-17	62.1	0.0	1.8	1	1	0	1	1	1	1	SAICAR	synthetase
DZR	PF12773.2	gi|257053284|ref|YP_003131117.1|	-	0.0065	16.2	2.3	0.0074	16.0	1.6	1.1	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-HYPF	PF07503.7	gi|257053284|ref|YP_003131117.1|	-	0.012	14.9	2.8	0.016	14.6	1.9	1.3	1	0	0	1	1	1	0	HypF	finger
zf-C3HC4_3	PF13920.1	gi|257053284|ref|YP_003131117.1|	-	0.034	13.8	1.6	0.042	13.5	1.1	1.2	1	1	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
OrfB_Zn_ribbon	PF07282.6	gi|257053284|ref|YP_003131117.1|	-	0.25	11.0	2.4	0.29	10.8	1.6	1.1	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
DUF3797	PF12677.2	gi|257053284|ref|YP_003131117.1|	-	0.29	10.7	1.6	1.5	8.4	0.0	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3797)
C1_1	PF00130.17	gi|257053284|ref|YP_003131117.1|	-	0.34	10.6	2.3	0.7	9.6	1.6	1.6	1	1	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
zinc-ribbons_6	PF07191.7	gi|257053284|ref|YP_003131117.1|	-	0.42	10.4	2.9	1.5	8.6	2.0	1.8	1	1	0	1	1	1	0	zinc-ribbons
Zn_Tnp_IS91	PF14319.1	gi|257053284|ref|YP_003131117.1|	-	0.48	9.9	2.7	0.46	10.0	1.9	1.0	1	0	0	1	1	1	0	Transposase	zinc-binding	domain
XPA_N	PF01286.13	gi|257053284|ref|YP_003131117.1|	-	1.9	8.2	4.5	3.6	7.3	3.1	1.7	1	1	0	1	1	1	0	XPA	protein	N-terminal
Formyl_trans_N	PF00551.14	gi|257053286|ref|YP_003131119.1|	-	8.8e-43	145.9	0.0	1.8e-42	144.9	0.0	1.5	2	0	0	2	2	2	1	Formyl	transferase
ACT_6	PF13740.1	gi|257053286|ref|YP_003131119.1|	-	6.8e-11	41.7	0.6	1.5e-10	40.6	0.4	1.5	1	0	0	1	1	1	1	ACT	domain
ACT	PF01842.20	gi|257053286|ref|YP_003131119.1|	-	1.3e-07	30.9	1.1	5.7e-07	28.8	0.4	2.3	2	0	0	2	2	2	1	ACT	domain
ACT_4	PF13291.1	gi|257053286|ref|YP_003131119.1|	-	0.00035	20.8	0.2	0.00096	19.4	0.1	1.8	1	1	0	1	1	1	1	ACT	domain
Glyco_transf_28	PF03033.15	gi|257053286|ref|YP_003131119.1|	-	0.013	15.2	0.0	0.035	13.8	0.0	1.7	2	0	0	2	2	2	0	Glycosyltransferase	family	28	N-terminal	domain
Oxidored_q1	PF00361.15	gi|257053287|ref|YP_003131120.1|	-	1.8e-66	224.1	5.7	1.8e-66	224.1	3.9	1.6	2	0	0	2	2	2	1	NADH-Ubiquinone/plastoquinone	(complex	I),	various	chains
Oxidored_q1_N	PF00662.15	gi|257053287|ref|YP_003131120.1|	-	1.4e-06	27.7	0.0	5.7e-06	25.7	0.0	2.0	1	0	0	1	1	1	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
Oxidored_q2	PF00420.19	gi|257053288|ref|YP_003131121.1|	-	1.7e-13	49.9	5.7	2e-13	49.7	3.9	1.1	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
CcmD	PF04995.9	gi|257053288|ref|YP_003131121.1|	-	8.3	6.2	13.9	2.7	7.8	0.6	2.5	3	0	0	3	3	3	0	Heme	exporter	protein	D	(CcmD)
Oxidored_q3	PF00499.15	gi|257053289|ref|YP_003131122.1|	-	9.2e-08	31.9	6.3	1.1e-07	31.7	4.3	1.1	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	6
DUF4040	PF13244.1	gi|257053289|ref|YP_003131122.1|	-	3.8e-07	29.9	15.7	3.8e-07	29.9	10.9	2.3	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4040)
DUF4401	PF14351.1	gi|257053289|ref|YP_003131122.1|	-	0.0016	17.5	12.2	0.0018	17.3	8.5	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4401)
DUF2244	PF10003.4	gi|257053289|ref|YP_003131122.1|	-	5.6	6.3	11.3	0.36	10.2	3.8	2.0	2	1	0	2	2	2	0	Integral	membrane	protein	(DUF2244)
Oxidored_q1	PF00361.15	gi|257053290|ref|YP_003131123.1|	-	4.8e-54	183.4	2.1	4.8e-54	183.4	1.4	1.7	2	0	0	2	2	2	1	NADH-Ubiquinone/plastoquinone	(complex	I),	various	chains
HycI	PF01750.13	gi|257053291|ref|YP_003131124.1|	-	1.5e-16	60.0	0.0	1.9e-16	59.7	0.0	1.1	1	0	0	1	1	1	1	Hydrogenase	maturation	protease
Fer4_7	PF12838.2	gi|257053292|ref|YP_003131125.1|	-	1.7e-13	50.6	23.3	4.8e-11	42.8	8.6	1.6	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|257053292|ref|YP_003131125.1|	-	7.1e-13	47.5	13.9	4e-08	32.5	1.6	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.1	gi|257053292|ref|YP_003131125.1|	-	6.7e-12	45.0	22.3	4.2e-09	36.0	8.2	1.6	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|257053292|ref|YP_003131125.1|	-	4.3e-11	42.1	13.6	1.1e-06	28.2	3.1	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.1	gi|257053292|ref|YP_003131125.1|	-	3.2e-09	36.9	11.8	5e-09	36.2	8.1	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|257053292|ref|YP_003131125.1|	-	3.3e-07	30.9	8.4	0.00014	22.5	0.5	2.3	1	1	1	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_2	PF12797.2	gi|257053292|ref|YP_003131125.1|	-	4.2e-07	29.5	12.4	0.0011	18.8	1.4	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_8	PF13183.1	gi|257053292|ref|YP_003131125.1|	-	1e-06	28.6	34.9	6.1e-05	22.9	9.3	1.9	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_21	PF14697.1	gi|257053292|ref|YP_003131125.1|	-	1.3e-05	24.9	9.9	2.2e-05	24.1	6.9	1.4	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|257053292|ref|YP_003131125.1|	-	7.2e-05	23.1	6.4	0.076	13.4	0.9	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_3	PF12798.2	gi|257053292|ref|YP_003131125.1|	-	0.00019	21.7	17.5	0.0015	18.9	2.4	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_4	PF12800.2	gi|257053292|ref|YP_003131125.1|	-	0.00035	20.6	13.2	0.028	14.7	1.7	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_17	PF13534.1	gi|257053292|ref|YP_003131125.1|	-	0.00061	20.0	14.0	0.47	10.8	2.6	2.2	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_11	PF13247.1	gi|257053292|ref|YP_003131125.1|	-	0.0056	16.5	4.9	0.023	14.5	3.6	1.6	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_15	PF13459.1	gi|257053292|ref|YP_003131125.1|	-	0.012	16.1	15.6	1.1	9.8	2.9	2.7	1	1	1	2	2	2	0	4Fe-4S	single	cluster	domain
PCYCGC	PF13798.1	gi|257053292|ref|YP_003131125.1|	-	0.15	11.6	4.0	0.18	11.4	2.8	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	with	PCYCGC	motif
DUF1540	PF07561.6	gi|257053292|ref|YP_003131125.1|	-	0.31	11.1	5.8	0.3	11.1	0.8	2.2	1	1	1	2	2	2	0	Domain	of	Unknown	Function	(DUF1540)
DUF3079	PF11278.3	gi|257053292|ref|YP_003131125.1|	-	1	8.9	6.7	4.5	6.9	1.1	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3079)
Fer4_13	PF13370.1	gi|257053292|ref|YP_003131125.1|	-	9.9	6.6	14.6	11	6.4	1.7	2.9	2	1	1	3	3	3	0	4Fe-4S	single	cluster	domain
NADHdh	PF00146.16	gi|257053293|ref|YP_003131126.1|	-	6.5e-47	160.0	7.4	8.2e-47	159.7	5.1	1.1	1	0	0	1	1	1	1	NADH	dehydrogenase
Complex1_49kDa	PF00346.14	gi|257053294|ref|YP_003131127.1|	-	6.4e-44	149.9	0.0	1.8e-33	115.7	0.0	2.3	1	1	1	2	2	2	2	Respiratory-chain	NADH	dehydrogenase,	49	Kd	subunit
NiFeSe_Hases	PF00374.14	gi|257053294|ref|YP_003131127.1|	-	2.1e-14	53.1	0.4	2.6e-10	39.7	0.0	2.8	3	1	0	3	3	3	2	Nickel-dependent	hydrogenase
A2M_recep	PF07677.9	gi|257053294|ref|YP_003131127.1|	-	0.13	12.4	0.0	5.2	7.3	0.0	2.3	2	0	0	2	2	2	0	A-macroglobulin	receptor
DUF2746	PF10874.3	gi|257053294|ref|YP_003131127.1|	-	0.61	10.3	4.2	5	7.3	0.1	2.7	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF2746)
Complex1_30kDa	PF00329.14	gi|257053295|ref|YP_003131128.1|	-	9.8e-28	96.4	0.0	1.3e-27	96.0	0.0	1.2	1	0	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	30	Kd	subunit
Peripla_BP_4	PF13407.1	gi|257053295|ref|YP_003131128.1|	-	0.0026	17.1	0.0	0.0034	16.7	0.0	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein	domain
AP_endonuc_2	PF01261.19	gi|257053295|ref|YP_003131128.1|	-	0.098	11.9	0.0	0.12	11.6	0.0	1.3	1	0	0	1	1	1	0	Xylose	isomerase-like	TIM	barrel
GntR	PF00392.16	gi|257053295|ref|YP_003131128.1|	-	0.14	11.6	0.1	0.72	9.3	0.0	2.2	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
Nup35_RRM_2	PF14605.1	gi|257053295|ref|YP_003131128.1|	-	0.15	11.8	0.0	0.26	11.0	0.0	1.4	1	0	0	1	1	1	0	Nup53/35/40-type	RNA	recognition	motif
Oxidored_q6	PF01058.17	gi|257053296|ref|YP_003131129.1|	-	2.5e-28	98.2	0.4	3.6e-28	97.8	0.3	1.2	1	0	0	1	1	1	1	NADH	ubiquinone	oxidoreductase,	20	Kd	subunit
DUF116	PF01976.12	gi|257053296|ref|YP_003131129.1|	-	0.1	12.0	0.3	0.21	11.0	0.0	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	DUF116
DUF2628	PF10947.3	gi|257053297|ref|YP_003131130.1|	-	9	6.1	6.0	17	5.2	2.3	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2628)
PurS	PF02700.9	gi|257053298|ref|YP_003131131.1|	-	1.6e-26	92.0	0.0	1.8e-26	91.9	0.0	1.0	1	0	0	1	1	1	1	Phosphoribosylformylglycinamidine	(FGAM)	synthase
AP_endonuc_2	PF01261.19	gi|257053298|ref|YP_003131131.1|	-	0.026	13.8	0.2	0.031	13.5	0.1	1.1	1	0	0	1	1	1	0	Xylose	isomerase-like	TIM	barrel
DUF3006	PF11213.3	gi|257053298|ref|YP_003131131.1|	-	0.15	11.8	1.3	0.23	11.2	0.9	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3006)
GATase_5	PF13507.1	gi|257053299|ref|YP_003131132.1|	-	6e-46	156.4	0.0	7.6e-46	156.1	0.0	1.0	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
GATase	PF00117.23	gi|257053299|ref|YP_003131132.1|	-	5.4e-08	32.5	0.0	6.3e-08	32.3	0.0	1.2	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
GATase_3	PF07685.9	gi|257053299|ref|YP_003131132.1|	-	7.1e-06	25.6	0.0	1.3e-05	24.8	0.0	1.5	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
DJ-1_PfpI	PF01965.19	gi|257053299|ref|YP_003131132.1|	-	0.0068	15.8	0.1	0.011	15.1	0.0	1.4	1	0	0	1	1	1	1	DJ-1/PfpI	family
Peptidase_C26	PF07722.8	gi|257053299|ref|YP_003131132.1|	-	0.03	13.7	0.1	0.064	12.6	0.0	1.4	1	1	0	1	1	1	0	Peptidase	C26
SBP_bac_5	PF00496.17	gi|257053300|ref|YP_003131133.1|	-	2.8e-42	144.9	0.2	4.6e-42	144.1	0.1	1.3	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
CBS	PF00571.23	gi|257053301|ref|YP_003131134.1|	-	6.2e-25	86.7	3.9	1.3e-11	44.0	0.8	2.1	2	0	0	2	2	2	2	CBS	domain
DUF309	PF03745.9	gi|257053302|ref|YP_003131135.1|	-	1.2e-14	53.4	0.2	2e-14	52.7	0.1	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF309)
PMT_2	PF13231.1	gi|257053303|ref|YP_003131136.1|	-	9.6e-14	51.5	14.0	9.6e-14	51.5	9.7	2.9	4	1	0	4	4	4	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
PMT	PF02366.13	gi|257053303|ref|YP_003131136.1|	-	2.5e-07	30.3	13.5	7.4e-07	28.7	9.4	1.8	1	0	0	1	1	1	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
UPF0104	PF03706.8	gi|257053304|ref|YP_003131137.1|	-	5.9e-22	78.2	36.7	7.7e-22	77.9	25.5	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0104)
Pam17	PF08566.5	gi|257053304|ref|YP_003131137.1|	-	0.19	11.3	0.2	0.19	11.3	0.1	1.6	2	0	0	2	2	2	0	Mitochondrial	import	protein	Pam17
Polysacc_deac_1	PF01522.16	gi|257053305|ref|YP_003131138.1|	-	6.3e-26	90.4	0.0	9.1e-26	89.9	0.0	1.2	1	0	0	1	1	1	1	Polysaccharide	deacetylase
DUF3473	PF11959.3	gi|257053305|ref|YP_003131138.1|	-	2.5e-17	62.5	0.0	3.4e-17	62.1	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3473)
Glyco_hydro_57	PF03065.10	gi|257053305|ref|YP_003131138.1|	-	0.035	13.0	0.0	0.052	12.4	0.0	1.2	1	0	0	1	1	1	0	Glycosyl	hydrolase	family	57
Phostensin_N	PF13916.1	gi|257053305|ref|YP_003131138.1|	-	0.076	13.0	0.0	0.22	11.5	0.0	1.7	2	0	0	2	2	2	0	PP1-regulatory	protein,	Phostensin	N-terminal
DUF2304	PF10066.4	gi|257053306|ref|YP_003131139.1|	-	4.1e-08	33.0	0.2	4.3e-08	33.0	0.2	1.0	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2304)
Glycos_transf_2	PF00535.21	gi|257053307|ref|YP_003131140.1|	-	9.4e-26	90.4	0.1	1.2e-25	90.1	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|257053307|ref|YP_003131140.1|	-	3.7e-09	36.7	0.5	5.7e-09	36.1	0.3	1.3	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.1	gi|257053307|ref|YP_003131140.1|	-	0.00026	21.2	0.0	0.00076	19.7	0.0	1.7	2	0	0	2	2	2	1	Glycosyl	transferase	family	2
NTP_transf_3	PF12804.2	gi|257053307|ref|YP_003131140.1|	-	0.0043	17.1	0.2	0.0061	16.6	0.1	1.5	1	1	0	1	1	1	1	MobA-like	NTP	transferase	domain
Phosphodiest	PF01663.17	gi|257053308|ref|YP_003131141.1|	-	6.2e-34	117.8	0.0	1.4e-33	116.7	0.0	1.5	1	1	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Metalloenzyme	PF01676.13	gi|257053308|ref|YP_003131141.1|	-	0.094	12.0	0.0	0.21	10.9	0.0	1.5	2	0	0	2	2	2	0	Metalloenzyme	superfamily
Nramp	PF01566.13	gi|257053309|ref|YP_003131142.1|	-	1.6e-62	211.3	33.4	2.8e-62	210.6	23.2	1.3	1	0	0	1	1	1	1	Natural	resistance-associated	macrophage	protein
AAA_16	PF13191.1	gi|257053310|ref|YP_003131143.1|	-	0.0004	20.4	0.1	0.00057	19.9	0.0	1.3	1	1	0	1	1	1	1	AAA	ATPase	domain
TruB_C	PF09142.6	gi|257053310|ref|YP_003131143.1|	-	0.078	12.6	1.8	1.5	8.5	0.3	2.5	2	0	0	2	2	2	0	tRNA	Pseudouridine	synthase	II,	C	terminal
AAA_25	PF13481.1	gi|257053310|ref|YP_003131143.1|	-	0.096	12.0	0.1	0.26	10.6	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
Cas_Cas02710	PF09670.5	gi|257053311|ref|YP_003131144.1|	-	3.4e-08	32.5	0.0	4.4e-08	32.1	0.0	1.1	1	0	0	1	1	1	1	CRISPR-associated	protein	(Cas_Cas02710)
HTH_27	PF13463.1	gi|257053311|ref|YP_003131144.1|	-	0.0048	17.1	0.1	0.033	14.5	0.0	2.2	1	1	0	1	1	1	1	Winged	helix	DNA-binding	domain
DUF1887	PF09002.6	gi|257053311|ref|YP_003131144.1|	-	0.033	12.6	0.0	0.041	12.2	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1887)
SHMT	PF00464.14	gi|257053312|ref|YP_003131145.1|	-	4e-137	456.8	0.1	4.9e-137	456.5	0.1	1.1	1	0	0	1	1	1	1	Serine	hydroxymethyltransferase
Aminotran_1_2	PF00155.16	gi|257053312|ref|YP_003131145.1|	-	1.6e-06	27.3	0.0	0.023	13.6	0.0	2.2	2	0	0	2	2	2	2	Aminotransferase	class	I	and	II
Beta_elim_lyase	PF01212.16	gi|257053312|ref|YP_003131145.1|	-	0.00013	21.2	2.1	0.00047	19.3	0.6	2.3	2	1	0	2	2	2	1	Beta-eliminating	lyase
DegT_DnrJ_EryC1	PF01041.12	gi|257053312|ref|YP_003131145.1|	-	0.0096	14.9	2.9	0.032	13.2	2.0	1.7	1	1	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
L-fibroin	PF05849.6	gi|257053312|ref|YP_003131145.1|	-	0.072	12.4	0.1	4	6.6	0.0	2.3	2	0	0	2	2	2	0	Fibroin	light	chain	(L-fibroin)
DUF4404	PF14357.1	gi|257053312|ref|YP_003131145.1|	-	0.074	13.4	0.1	16	6.0	0.0	3.2	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4404)
TAT_signal	PF10518.4	gi|257053313|ref|YP_003131146.1|	-	0.00069	19.4	1.5	0.0015	18.3	1.0	1.6	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
tRNA_anti-codon	PF01336.20	gi|257053314|ref|YP_003131147.1|	-	1.3e-26	92.2	15.1	2.2e-12	46.6	0.6	3.9	4	1	0	4	4	4	3	OB-fold	nucleic	acid	binding	domain
Rep_fac-A_C	PF08646.5	gi|257053314|ref|YP_003131147.1|	-	0.0095	15.6	0.6	4.5	6.9	0.0	3.7	4	0	0	4	4	4	1	Replication	factor-A	C	terminal	domain
IKI3	PF04762.7	gi|257053314|ref|YP_003131147.1|	-	0.24	9.1	0.3	0.34	8.6	0.2	1.1	1	0	0	1	1	1	0	IKI3	family
CBFD_NFYB_HMF	PF00808.18	gi|257053315|ref|YP_003131148.1|	-	2.6e-24	85.0	0.2	2.3e-13	49.9	0.1	2.0	2	0	0	2	2	2	2	Histone-like	transcription	factor	(CBF/NF-Y)	and	archaeal	histone
Histone	PF00125.19	gi|257053315|ref|YP_003131148.1|	-	2.7e-14	53.0	1.1	3.5e-08	33.4	0.2	2.1	2	0	0	2	2	2	2	Core	histone	H2A/H2B/H3/H4
CENP-S	PF15630.1	gi|257053315|ref|YP_003131148.1|	-	5.6e-05	23.2	0.8	0.00019	21.5	0.2	1.9	2	0	0	2	2	2	1	Kinetochore	component	CENP-S
DUF1931	PF09123.6	gi|257053315|ref|YP_003131148.1|	-	0.069	13.0	0.3	1.8	8.5	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1931)
Metal_resist	PF13801.1	gi|257053315|ref|YP_003131148.1|	-	6.2	6.8	14.1	2.1	8.3	1.3	2.1	2	0	0	2	2	2	0	Heavy-metal	resistance
Hist_deacetyl	PF00850.14	gi|257053316|ref|YP_003131149.1|	-	4.8e-83	279.0	0.0	5.9e-83	278.7	0.0	1.0	1	0	0	1	1	1	1	Histone	deacetylase	domain
tRNA_NucTransf2	PF09249.6	gi|257053317|ref|YP_003131150.1|	-	4.7e-42	142.4	0.0	7.9e-42	141.7	0.0	1.4	1	0	0	1	1	1	1	tRNA	nucleotidyltransferase,	second	domain
NTP_transf_2	PF01909.18	gi|257053317|ref|YP_003131150.1|	-	1.4e-12	47.7	0.1	5e-12	45.9	0.0	1.9	2	0	0	2	2	2	1	Nucleotidyltransferase	domain
DUF2391	PF09622.5	gi|257053318|ref|YP_003131151.1|	-	0.00035	19.8	0.4	0.00048	19.3	0.3	1.1	1	0	0	1	1	1	1	Putative	integral	membrane	protein	(DUF2391)
Yip1	PF04893.12	gi|257053318|ref|YP_003131151.1|	-	0.0096	15.4	2.6	0.013	15.0	1.8	1.3	1	1	0	1	1	1	1	Yip1	domain
Crust_neuro_H	PF03858.8	gi|257053318|ref|YP_003131151.1|	-	0.14	12.7	0.0	0.25	11.9	0.0	1.5	1	0	0	1	1	1	0	Crustacean	neurohormone	H
KaiC	PF06745.8	gi|257053319|ref|YP_003131152.1|	-	0.0013	17.8	0.1	0.0017	17.5	0.1	1.1	1	0	0	1	1	1	1	KaiC
PGM_PMM_I	PF02878.11	gi|257053320|ref|YP_003131153.1|	-	1.2e-31	108.9	0.0	2.1e-31	108.2	0.0	1.4	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
PGM_PMM_II	PF02879.11	gi|257053320|ref|YP_003131153.1|	-	4.5e-19	68.7	1.1	2.6e-18	66.2	0.1	2.3	2	0	0	2	2	2	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
PGM_PMM_III	PF02880.11	gi|257053320|ref|YP_003131153.1|	-	1.4e-17	63.7	0.0	2.6e-17	62.8	0.0	1.5	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	III
PGM_PMM_IV	PF00408.15	gi|257053320|ref|YP_003131153.1|	-	6.8e-12	45.2	1.7	1.7e-11	43.9	0.2	2.4	2	0	0	2	2	2	1	Phosphoglucomutase/phosphomannomutase,	C-terminal	domain
PBP_like	PF12727.2	gi|257053320|ref|YP_003131153.1|	-	0.26	10.2	2.3	0.17	10.7	0.2	1.7	2	0	0	2	2	2	0	PBP	superfamily	domain
DUF2270	PF10028.4	gi|257053321|ref|YP_003131154.1|	-	2.4e-65	219.4	0.2	3.1e-65	219.1	0.1	1.0	1	0	0	1	1	1	1	Predicted	integral	membrane	protein	(DUF2270)
DUF4131	PF13567.1	gi|257053321|ref|YP_003131154.1|	-	0.12	11.7	1.2	2.3	7.5	0.1	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4131)
Acyl_transf_3	PF01757.17	gi|257053321|ref|YP_003131154.1|	-	0.36	9.6	3.6	1.8	7.3	0.3	2.3	2	1	0	2	2	2	0	Acyltransferase	family
Histone	PF00125.19	gi|257053322|ref|YP_003131155.1|	-	0.00017	21.6	0.1	0.00017	21.6	0.0	1.3	1	1	0	1	1	1	1	Core	histone	H2A/H2B/H3/H4
DUF1931	PF09123.6	gi|257053322|ref|YP_003131155.1|	-	0.0016	18.4	0.9	0.0017	18.2	0.6	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1931)
CBFD_NFYB_HMF	PF00808.18	gi|257053322|ref|YP_003131155.1|	-	0.0027	17.7	0.0	0.0033	17.4	0.0	1.4	1	1	0	1	1	1	1	Histone-like	transcription	factor	(CBF/NF-Y)	and	archaeal	histone
CP12	PF02672.10	gi|257053322|ref|YP_003131155.1|	-	0.15	12.5	1.0	0.18	12.2	0.7	1.2	1	1	0	1	1	1	0	CP12	domain
TFIID_20kDa	PF03847.8	gi|257053322|ref|YP_003131155.1|	-	0.17	12.1	0.9	0.2	11.9	0.6	1.5	1	1	0	1	1	1	0	Transcription	initiation	factor	TFIID	subunit	A
AIRC	PF00731.15	gi|257053323|ref|YP_003131156.1|	-	3.7e-17	62.0	3.6	3.7e-17	62.0	2.5	2.1	2	0	0	2	2	2	1	AIR	carboxylase
GIY-YIG	PF01541.19	gi|257053324|ref|YP_003131157.1|	-	2.4e-13	50.2	0.0	2.6e-13	50.1	0.0	1.0	1	0	0	1	1	1	1	GIY-YIG	catalytic	domain
T5orf172	PF10544.4	gi|257053324|ref|YP_003131157.1|	-	0.018	15.3	0.1	0.022	15.1	0.0	1.2	1	0	0	1	1	1	0	T5orf172	domain
MUG113	PF13455.1	gi|257053324|ref|YP_003131157.1|	-	0.11	12.9	0.1	0.17	12.3	0.1	1.4	1	1	0	1	1	1	0	Meiotically	up-regulated	gene	113
Methyltransf_11	PF08241.7	gi|257053325|ref|YP_003131158.1|	-	6.1e-24	84.3	0.0	1.4e-23	83.2	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|257053325|ref|YP_003131158.1|	-	1.1e-17	63.9	0.0	1.4e-17	63.6	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|257053325|ref|YP_003131158.1|	-	5.9e-15	55.3	0.0	8.1e-15	54.9	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|257053325|ref|YP_003131158.1|	-	8.2e-14	51.8	0.1	2.5e-13	50.2	0.0	1.8	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|257053325|ref|YP_003131158.1|	-	1.4e-11	44.9	0.0	2.7e-11	44.0	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|257053325|ref|YP_003131158.1|	-	2.4e-11	43.2	0.0	5.5e-11	42.0	0.0	1.5	1	1	1	2	2	2	1	ubiE/COQ5	methyltransferase	family
Methyltransf_26	PF13659.1	gi|257053325|ref|YP_003131158.1|	-	4.9e-11	42.6	1.1	1.7e-10	40.9	0.8	1.9	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|257053325|ref|YP_003131158.1|	-	7.5e-11	42.3	0.0	1.3e-10	41.6	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_9	PF08003.6	gi|257053325|ref|YP_003131158.1|	-	2.9e-08	32.7	0.0	4e-08	32.3	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
PCMT	PF01135.14	gi|257053325|ref|YP_003131158.1|	-	0.00017	21.2	0.0	0.00026	20.5	0.0	1.4	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
N6_N4_Mtase	PF01555.13	gi|257053325|ref|YP_003131158.1|	-	0.00077	19.0	0.0	0.4	10.1	0.0	2.2	2	0	0	2	2	2	2	DNA	methylase
CMAS	PF02353.15	gi|257053325|ref|YP_003131158.1|	-	0.0053	15.8	0.0	0.0069	15.4	0.0	1.3	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_8	PF05148.10	gi|257053325|ref|YP_003131158.1|	-	0.0059	16.2	0.0	0.069	12.7	0.0	2.1	1	1	0	1	1	1	1	Hypothetical	methyltransferase
GCD14	PF08704.5	gi|257053325|ref|YP_003131158.1|	-	0.008	15.7	0.0	0.011	15.2	0.0	1.2	1	0	0	1	1	1	1	tRNA	methyltransferase	complex	GCD14	subunit
Methyltransf_32	PF13679.1	gi|257053325|ref|YP_003131158.1|	-	0.014	15.0	0.0	0.022	14.4	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
MTS	PF05175.9	gi|257053325|ref|YP_003131158.1|	-	0.019	14.3	0.0	0.038	13.3	0.0	1.5	1	0	0	1	1	1	0	Methyltransferase	small	domain
PrmA	PF06325.8	gi|257053325|ref|YP_003131158.1|	-	0.02	14.0	0.1	0.034	13.2	0.0	1.3	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
MetW	PF07021.7	gi|257053325|ref|YP_003131158.1|	-	0.14	11.5	0.0	0.2	11.0	0.0	1.3	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
NAD_binding_1	PF00175.16	gi|257053326|ref|YP_003131159.1|	-	4.3e-16	59.4	0.0	2.8e-14	53.5	0.0	2.3	1	1	0	1	1	1	1	Oxidoreductase	NAD-binding	domain
FAD_binding_6	PF00970.19	gi|257053326|ref|YP_003131159.1|	-	1.4e-12	47.5	0.0	2.3e-12	46.9	0.0	1.3	1	0	0	1	1	1	1	Oxidoreductase	FAD-binding	domain
GCHY-1	PF02649.9	gi|257053327|ref|YP_003131160.1|	-	2.8e-85	285.9	0.4	3.2e-85	285.7	0.2	1.0	1	0	0	1	1	1	1	Type	I	GTP	cyclohydrolase	folE2
Limkain-b1	PF11608.3	gi|257053327|ref|YP_003131160.1|	-	0.00011	21.9	0.0	0.00027	20.6	0.0	1.6	1	0	0	1	1	1	1	Limkain	b1
DUF1770	PF08589.5	gi|257053327|ref|YP_003131160.1|	-	0.0074	16.8	1.0	0.012	16.1	0.1	1.7	2	0	0	2	2	2	1	Fungal	protein	of	unknown	function	(DUF1770)
DUF2868	PF11067.3	gi|257053327|ref|YP_003131160.1|	-	0.031	13.4	0.3	0.043	12.9	0.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2868)
FxsA	PF04186.8	gi|257053328|ref|YP_003131161.1|	-	8e-34	115.8	9.1	9.9e-34	115.5	6.3	1.1	1	0	0	1	1	1	1	FxsA	cytoplasmic	membrane	protein
CARDB	PF07705.6	gi|257053330|ref|YP_003131163.1|	-	3.1e-09	36.7	66.1	0.033	14.2	2.8	7.6	5	1	1	6	6	6	5	CARDB
adh_short	PF00106.20	gi|257053332|ref|YP_003131165.1|	-	2.2e-25	89.4	2.3	2.9e-25	89.1	1.6	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.1	gi|257053332|ref|YP_003131165.1|	-	5.6e-19	68.8	0.0	7.4e-19	68.4	0.0	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.5	gi|257053332|ref|YP_003131165.1|	-	4.6e-06	26.4	2.5	1.4e-05	24.8	1.7	1.7	1	1	0	1	1	1	1	KR	domain
Epimerase	PF01370.16	gi|257053332|ref|YP_003131165.1|	-	0.0005	19.5	0.1	0.0007	19.0	0.0	1.2	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3HCDH_N	PF02737.13	gi|257053332|ref|YP_003131165.1|	-	0.0067	16.0	0.4	0.0095	15.6	0.2	1.2	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
HATPase_c	PF02518.21	gi|257053333|ref|YP_003131166.1|	-	1.9e-19	69.3	0.6	1.1e-18	66.9	0.4	2.1	1	1	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.20	gi|257053333|ref|YP_003131166.1|	-	1.7e-12	47.1	1.0	3.8e-12	46.0	0.2	2.0	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_9	PF13426.1	gi|257053333|ref|YP_003131166.1|	-	1.8e-09	37.8	0.0	4.4e-09	36.6	0.0	1.7	1	0	0	1	1	1	1	PAS	domain
PAS_4	PF08448.5	gi|257053333|ref|YP_003131166.1|	-	4.6e-05	23.4	0.3	0.00021	21.3	0.0	2.1	2	0	0	2	2	2	1	PAS	fold
PAS	PF00989.19	gi|257053333|ref|YP_003131166.1|	-	0.00019	21.2	0.0	0.0004	20.1	0.0	1.7	1	1	0	1	1	1	1	PAS	fold
HATPase_c_2	PF13581.1	gi|257053333|ref|YP_003131166.1|	-	0.00025	20.8	0.1	0.0006	19.5	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HATPase_c_5	PF14501.1	gi|257053333|ref|YP_003131166.1|	-	0.053	13.2	0.0	9.8	5.9	0.0	2.4	2	0	0	2	2	2	0	GHKL	domain
SPOB_a	PF14689.1	gi|257053333|ref|YP_003131166.1|	-	0.13	11.8	0.1	0.22	11.1	0.0	1.4	1	0	0	1	1	1	0	Sensor_kinase_SpoOB-type,	alpha-helical	domain
HTH_10	PF04967.7	gi|257053335|ref|YP_003131168.1|	-	2.4e-16	59.0	0.1	3.7e-16	58.4	0.1	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
MarR_2	PF12802.2	gi|257053335|ref|YP_003131168.1|	-	0.0099	15.5	0.1	0.042	13.5	0.0	2.0	2	0	0	2	2	2	1	MarR	family
HTH_24	PF13412.1	gi|257053335|ref|YP_003131168.1|	-	0.013	14.8	0.0	0.022	14.1	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.1	gi|257053335|ref|YP_003131168.1|	-	0.05	13.1	0.2	0.11	12.0	0.1	1.6	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
HTH_DeoR	PF08220.7	gi|257053335|ref|YP_003131168.1|	-	0.096	12.2	0.1	0.21	11.1	0.1	1.5	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
DUF1540	PF07561.6	gi|257053336|ref|YP_003131169.1|	-	0.13	12.2	6.8	0.19	11.8	4.7	1.3	1	1	0	1	1	1	0	Domain	of	Unknown	Function	(DUF1540)
DUF2403	PF10290.4	gi|257053336|ref|YP_003131169.1|	-	0.51	10.5	3.2	3.3	7.9	1.1	2.0	1	1	1	2	2	2	0	Glycine-rich	protein	domain	(DUF2403)
DEAD	PF00270.24	gi|257053338|ref|YP_003131171.1|	-	1.7e-22	79.6	0.0	2.7e-22	79.0	0.0	1.2	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
DUF1998	PF09369.5	gi|257053338|ref|YP_003131171.1|	-	2.4e-19	69.6	0.2	5.9e-19	68.4	0.2	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1998)
Helicase_C	PF00271.26	gi|257053338|ref|YP_003131171.1|	-	3.8e-09	36.2	0.1	2.1e-08	33.8	0.0	2.4	2	1	0	2	2	2	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.10	gi|257053338|ref|YP_003131171.1|	-	0.11	12.3	0.0	0.21	11.4	0.0	1.4	1	0	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
Plasmid_stabil	PF05016.9	gi|257053339|ref|YP_003131172.1|	-	1.2e-05	25.5	0.0	1.6e-05	25.1	0.0	1.2	1	0	0	1	1	1	1	Plasmid	stabilisation	system	protein
RHH_1	PF01402.16	gi|257053340|ref|YP_003131173.1|	-	0.0078	16.0	0.0	0.016	15.0	0.0	1.5	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
GFO_IDH_MocA	PF01408.17	gi|257053341|ref|YP_003131174.1|	-	1.9e-24	86.4	0.0	4.4e-24	85.3	0.0	1.6	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
GFO_IDH_MocA_C	PF02894.12	gi|257053341|ref|YP_003131174.1|	-	3.6e-11	42.8	0.0	7.5e-11	41.8	0.0	1.5	1	0	0	1	1	1	1	Oxidoreductase	family,	C-terminal	alpha/beta	domain
MMR_HSR1_C	PF08438.5	gi|257053342|ref|YP_003131175.1|	-	2.6e-31	108.0	0.0	4e-31	107.4	0.0	1.3	1	0	0	1	1	1	1	GTPase	of	unknown	function	C-terminal
MMR_HSR1	PF01926.18	gi|257053342|ref|YP_003131175.1|	-	2.8e-16	59.5	0.0	7.4e-16	58.1	0.0	1.8	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
TGS	PF02824.16	gi|257053342|ref|YP_003131175.1|	-	1.7e-11	43.7	0.0	3.4e-11	42.7	0.0	1.5	1	0	0	1	1	1	1	TGS	domain
FeoB_N	PF02421.13	gi|257053342|ref|YP_003131175.1|	-	7.8e-08	31.7	0.0	5.1e-07	29.1	0.0	2.2	3	0	0	3	3	3	1	Ferrous	iron	transport	protein	B
MR_MLE	PF01188.16	gi|257053342|ref|YP_003131175.1|	-	0.81	10.2	4.1	0.9	10.1	0.1	3.1	4	0	0	4	4	4	0	Mandelate	racemase	/	muconate	lactonizing	enzyme,	C-terminal	domain
Pribosyltran	PF00156.22	gi|257053343|ref|YP_003131176.1|	-	9.7e-22	77.0	0.0	1.5e-21	76.3	0.0	1.3	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
HTH_23	PF13384.1	gi|257053343|ref|YP_003131176.1|	-	0.0043	16.6	0.0	0.0089	15.6	0.0	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
PRTase_2	PF15609.1	gi|257053343|ref|YP_003131176.1|	-	0.0057	15.9	0.2	0.032	13.5	0.1	2.0	1	1	0	1	1	1	1	Phosphoribosyl	transferase
HTH_7	PF02796.10	gi|257053343|ref|YP_003131176.1|	-	0.017	14.9	0.0	0.031	14.1	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	resolvase
HTH_38	PF13936.1	gi|257053343|ref|YP_003131176.1|	-	0.056	12.9	0.2	1.1	8.8	0.0	2.6	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_11	PF08279.7	gi|257053343|ref|YP_003131176.1|	-	0.074	12.7	0.0	0.17	11.5	0.0	1.6	1	0	0	1	1	1	0	HTH	domain
Sigma70_r4	PF04545.11	gi|257053343|ref|YP_003131176.1|	-	0.078	12.3	0.0	0.16	11.3	0.0	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_Crp_2	PF13545.1	gi|257053343|ref|YP_003131176.1|	-	0.093	12.5	0.0	0.19	11.5	0.0	1.5	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
UPRTase	PF14681.1	gi|257053343|ref|YP_003131176.1|	-	0.11	11.6	0.0	0.14	11.3	0.0	1.2	1	0	0	1	1	1	0	Uracil	phosphoribosyltransferase
HSCB_C	PF07743.8	gi|257053344|ref|YP_003131177.1|	-	0.057	13.8	5.4	0.2	12.1	1.7	2.5	2	1	0	2	2	2	0	HSCB	C-terminal	oligomerisation	domain
Plasmid_killer	PF05015.8	gi|257053344|ref|YP_003131177.1|	-	0.082	13.0	0.6	3.8	7.7	0.1	2.6	1	1	2	3	3	3	0	Plasmid	maintenance	system	killer	protein
NPV_P10	PF05531.7	gi|257053344|ref|YP_003131177.1|	-	0.097	12.9	5.5	0.24	11.6	2.3	2.5	2	0	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
BTV_NS2	PF04514.7	gi|257053344|ref|YP_003131177.1|	-	0.16	10.8	2.9	0.2	10.5	2.0	1.1	1	0	0	1	1	1	0	Bluetongue	virus	non-structural	protein	NS2
DUF1542	PF07564.6	gi|257053344|ref|YP_003131177.1|	-	0.27	11.2	2.4	7.7	6.6	0.2	2.2	1	1	1	2	2	2	0	Domain	of	Unknown	Function	(DUF1542)
Baculo_PEP_C	PF04513.7	gi|257053344|ref|YP_003131177.1|	-	0.37	10.6	5.8	1.8	8.4	1.3	2.4	2	1	0	2	2	2	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Syntaxin	PF00804.20	gi|257053344|ref|YP_003131177.1|	-	0.43	10.7	6.1	5.7	7.1	2.7	2.7	2	1	0	2	2	2	0	Syntaxin
HWE_HK	PF07536.9	gi|257053344|ref|YP_003131177.1|	-	0.62	10.5	5.0	1.3	9.5	0.4	2.8	2	1	1	3	3	3	0	HWE	histidine	kinase
PilJ	PF13675.1	gi|257053344|ref|YP_003131177.1|	-	1.1	9.5	10.4	2.9	8.2	3.1	2.5	1	1	1	2	2	2	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
DMPK_coil	PF08826.5	gi|257053344|ref|YP_003131177.1|	-	5.6	6.9	8.3	8.1	6.4	0.1	3.4	3	1	1	4	4	4	0	DMPK	coiled	coil	domain	like
ATP-grasp_5	PF13549.1	gi|257053345|ref|YP_003131178.1|	-	6.9e-75	251.0	0.9	1.3e-74	250.1	0.4	1.6	2	0	0	2	2	2	1	ATP-grasp	domain
Succ_CoA_lig	PF13607.1	gi|257053345|ref|YP_003131178.1|	-	1.7e-54	183.1	0.1	4.3e-54	181.8	0.1	1.8	1	0	0	1	1	1	1	Succinyl-CoA	ligase	like	flavodoxin	domain
CoA_binding_2	PF13380.1	gi|257053345|ref|YP_003131178.1|	-	2.2e-22	79.4	2.3	4.4e-22	78.4	0.2	2.7	3	0	0	3	3	3	1	CoA	binding	domain
CoA_binding	PF02629.14	gi|257053345|ref|YP_003131178.1|	-	4.4e-09	36.7	1.0	4.4e-09	36.7	0.7	2.7	3	1	0	3	3	3	1	CoA	binding	domain
ATP-grasp_2	PF08442.5	gi|257053345|ref|YP_003131178.1|	-	0.0017	17.7	0.1	0.0071	15.7	0.0	2.2	1	1	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_4	PF13535.1	gi|257053345|ref|YP_003131178.1|	-	0.076	12.7	0.0	0.19	11.4	0.0	1.6	1	0	0	1	1	1	0	ATP-grasp	domain
Ish1	PF10281.4	gi|257053345|ref|YP_003131178.1|	-	0.15	12.1	0.0	17	5.5	0.0	2.6	2	0	0	2	2	2	0	Putative	stress-responsive	nuclear	envelope	protein
DUF2007	PF09413.5	gi|257053345|ref|YP_003131178.1|	-	3.8	7.4	6.7	32	4.4	0.2	3.8	5	0	0	5	5	5	0	Domain	of	unknown	function	(DUF2007)
AAA_26	PF13500.1	gi|257053346|ref|YP_003131179.1|	-	1.1e-32	113.2	0.0	1.7e-32	112.6	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
DRTGG	PF07085.7	gi|257053346|ref|YP_003131179.1|	-	6.5e-26	89.9	0.5	4.5e-25	87.2	0.0	2.5	3	0	0	3	3	3	1	DRTGG	domain
CbiA	PF01656.18	gi|257053346|ref|YP_003131179.1|	-	4.8e-05	22.8	0.2	7.9e-05	22.1	0.1	1.3	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
DHDPS	PF00701.17	gi|257053347|ref|YP_003131180.1|	-	2.7e-69	232.9	0.0	3e-69	232.8	0.0	1.0	1	0	0	1	1	1	1	Dihydrodipicolinate	synthetase	family
DUF4380	PF14315.1	gi|257053348|ref|YP_003131181.1|	-	9.4e-69	231.6	0.0	1.1e-68	231.4	0.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4380)
Imm42	PF15601.1	gi|257053349|ref|YP_003131182.1|	-	0.0085	15.5	0.0	0.012	14.9	0.0	1.2	1	0	0	1	1	1	1	Immunity	protein	42
PfkB	PF00294.19	gi|257053350|ref|YP_003131183.1|	-	1.7e-45	155.4	1.5	2.1e-45	155.1	1.0	1.0	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Trypsin_2	PF13365.1	gi|257053351|ref|YP_003131184.1|	-	8.3e-18	64.5	0.8	1.5e-17	63.7	0.5	1.4	1	0	0	1	1	1	1	Trypsin-like	peptidase	domain
PDZ_2	PF13180.1	gi|257053351|ref|YP_003131184.1|	-	3.7e-15	55.5	0.0	6.5e-15	54.7	0.0	1.4	1	0	0	1	1	1	1	PDZ	domain
Trypsin	PF00089.21	gi|257053351|ref|YP_003131184.1|	-	2.2e-10	40.5	2.3	1.8e-09	37.5	1.6	2.0	1	1	0	1	1	1	1	Trypsin
Peptidase_S32	PF05579.8	gi|257053351|ref|YP_003131184.1|	-	0.46	9.3	4.5	6.5	5.6	0.5	2.2	2	0	0	2	2	2	0	Equine	arteritis	virus	serine	endopeptidase	S32
MR_MLE_C	PF13378.1	gi|257053352|ref|YP_003131185.1|	-	5.1e-29	100.4	0.2	1.2e-28	99.2	0.1	1.7	2	0	0	2	2	2	1	Enolase	C-terminal	domain-like
MR_MLE	PF01188.16	gi|257053352|ref|YP_003131185.1|	-	6.3e-14	52.2	1.6	4.6e-13	49.4	0.1	2.8	3	0	0	3	3	3	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	C-terminal	domain
MR_MLE_N	PF02746.11	gi|257053352|ref|YP_003131185.1|	-	6.5e-14	51.9	0.0	1.3e-13	50.9	0.0	1.5	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
RHH_1	PF01402.16	gi|257053353|ref|YP_003131186.1|	-	0.00019	21.1	0.9	0.00025	20.7	0.6	1.2	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
FKBP_C	PF00254.23	gi|257053354|ref|YP_003131187.1|	-	8.3e-23	80.2	0.1	1.2e-22	79.6	0.1	1.3	1	0	0	1	1	1	1	FKBP-type	peptidyl-prolyl	cis-trans	isomerase
Peptidase_S13	PF02113.10	gi|257053354|ref|YP_003131187.1|	-	0.05	12.1	0.0	0.059	11.8	0.0	1.0	1	0	0	1	1	1	0	D-Ala-D-Ala	carboxypeptidase	3	(S13)	family
DUF4203	PF13886.1	gi|257053355|ref|YP_003131188.1|	-	0.0085	15.5	9.2	0.011	15.2	6.3	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4203)
PSII	PF00421.14	gi|257053356|ref|YP_003131189.1|	-	0.083	11.4	0.0	0.12	10.9	0.0	1.3	1	0	0	1	1	1	0	Photosystem	II	protein
DUF4229	PF14012.1	gi|257053356|ref|YP_003131189.1|	-	0.22	11.4	3.4	0.38	10.6	0.3	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4229)
VIT1	PF01988.14	gi|257053356|ref|YP_003131189.1|	-	5	6.5	6.5	5.1	6.5	0.4	2.3	2	1	0	2	2	2	0	VIT	family
PPC	PF04151.10	gi|257053357|ref|YP_003131190.1|	-	0.028	15.3	0.3	0.052	14.5	0.2	1.4	1	0	0	1	1	1	0	Bacterial	pre-peptidase	C-terminal	domain
Methyltrn_RNA_3	PF02598.12	gi|257053358|ref|YP_003131191.1|	-	9.2e-50	169.6	0.0	1.1e-49	169.3	0.0	1.0	1	0	0	1	1	1	1	Putative	RNA	methyltransferase
Ribosomal_L3	PF00297.17	gi|257053359|ref|YP_003131192.1|	-	2.3e-89	299.2	0.0	3.9e-89	298.5	0.0	1.4	2	0	0	2	2	2	1	Ribosomal	protein	L3
Ribosomal_L4	PF00573.17	gi|257053360|ref|YP_003131193.1|	-	1.4e-41	141.9	0.1	1.6e-41	141.8	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L4/L1	family
DUF4398	PF14346.1	gi|257053360|ref|YP_003131193.1|	-	0.092	12.8	4.4	0.46	10.5	1.0	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4398)
Ribosomal_L23	PF00276.15	gi|257053361|ref|YP_003131194.1|	-	7.3e-19	67.5	1.2	9.2e-19	67.1	0.9	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L23
Flagellin_D3	PF08884.6	gi|257053361|ref|YP_003131194.1|	-	0.048	13.8	0.6	0.057	13.6	0.4	1.1	1	0	0	1	1	1	0	Flagellin	D3	domain
DUF2551	PF10826.3	gi|257053361|ref|YP_003131194.1|	-	0.051	13.4	0.1	0.071	13.0	0.0	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2551)
P2	PF07194.6	gi|257053361|ref|YP_003131194.1|	-	0.062	13.1	2.6	0.3	10.9	0.7	2.0	1	1	1	2	2	2	0	P2	response	regulator	binding	domain
Flagellin_IN	PF07196.8	gi|257053361|ref|YP_003131194.1|	-	0.083	12.8	2.1	0.19	11.7	0.3	2.2	1	1	1	2	2	2	0	Flagellin	hook	IN	motif
Ribosomal_L2_C	PF03947.13	gi|257053362|ref|YP_003131195.1|	-	5.2e-45	152.4	0.5	6.9e-45	152.0	0.4	1.2	1	0	0	1	1	1	1	Ribosomal	Proteins	L2,	C-terminal	domain
Ribosomal_L2	PF00181.18	gi|257053362|ref|YP_003131195.1|	-	3.2e-16	59.0	0.0	8.3e-16	57.7	0.0	1.8	1	0	0	1	1	1	1	Ribosomal	Proteins	L2,	RNA	binding	domain
Ribosomal_S19	PF00203.16	gi|257053363|ref|YP_003131196.1|	-	2.7e-27	94.2	0.0	4.7e-27	93.4	0.0	1.4	1	0	0	1	1	1	1	Ribosomal	protein	S19
Citrate_synt	PF00285.16	gi|257053363|ref|YP_003131196.1|	-	0.055	12.1	0.0	0.058	12.1	0.0	1.2	1	0	0	1	1	1	0	Citrate	synthase
Ribosomal_L22	PF00237.14	gi|257053364|ref|YP_003131197.1|	-	2.1e-27	95.1	0.0	2.4e-27	94.9	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L22p/L17e
KH_2	PF07650.12	gi|257053365|ref|YP_003131198.1|	-	3.2e-16	58.6	0.0	7.6e-16	57.4	0.0	1.7	1	0	0	1	1	1	1	KH	domain
Ribosomal_S3_C	PF00189.15	gi|257053365|ref|YP_003131198.1|	-	4.8e-16	58.7	0.1	7.5e-16	58.1	0.1	1.3	1	0	0	1	1	1	1	Ribosomal	protein	S3,	C-terminal	domain
KH_1	PF00013.24	gi|257053365|ref|YP_003131198.1|	-	0.0012	18.3	0.6	0.0012	18.3	0.4	2.3	3	0	0	3	3	3	1	KH	domain
KH_3	PF13014.1	gi|257053365|ref|YP_003131198.1|	-	0.0052	16.4	1.3	0.027	14.1	0.9	2.3	1	0	0	1	1	1	1	KH	domain
KH_4	PF13083.1	gi|257053365|ref|YP_003131198.1|	-	0.22	11.1	0.2	0.22	11.1	0.1	2.7	2	1	1	3	3	3	0	KH	domain
SGT1	PF07093.6	gi|257053365|ref|YP_003131198.1|	-	0.24	9.7	10.7	0.23	9.7	7.4	1.1	1	0	0	1	1	1	0	SGT1	protein
HK97-gp10_like	PF04883.7	gi|257053365|ref|YP_003131198.1|	-	1.1	10.1	3.6	0.81	10.6	0.2	2.4	2	0	0	2	2	2	0	Bacteriophage	HK97-gp10,	putative	tail-component
Ribosomal_L29	PF00831.18	gi|257053366|ref|YP_003131199.1|	-	2.8e-20	71.7	0.3	3.1e-20	71.6	0.2	1.0	1	0	0	1	1	1	1	Ribosomal	L29	protein
UPF0086	PF01868.11	gi|257053367|ref|YP_003131200.1|	-	4.3e-23	80.7	0.0	5e-23	80.5	0.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	UPF0086
Ribosomal_S17	PF00366.15	gi|257053368|ref|YP_003131201.1|	-	1.1e-27	95.8	0.7	1.3e-27	95.5	0.5	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S17
Ribosomal_L14	PF00238.14	gi|257053369|ref|YP_003131202.1|	-	9.5e-37	125.4	0.0	1.1e-36	125.3	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L14p/L23e
FecR	PF04773.8	gi|257053369|ref|YP_003131202.1|	-	0.11	12.7	0.1	1.6	9.0	0.0	2.2	1	1	1	2	2	2	0	FecR	protein
KOW	PF00467.24	gi|257053370|ref|YP_003131203.1|	-	2e-07	30.4	0.5	3.7e-07	29.6	0.0	1.7	2	0	0	2	2	2	1	KOW	motif
Ribosomal_S4e	PF00900.15	gi|257053371|ref|YP_003131204.1|	-	8.7e-23	79.7	0.0	1.5e-22	78.9	0.0	1.4	1	0	0	1	1	1	1	Ribosomal	family	S4e
RS4NT	PF08071.7	gi|257053371|ref|YP_003131204.1|	-	2.9e-11	43.0	0.0	5.2e-11	42.2	0.0	1.4	1	0	0	1	1	1	1	RS4NT	(NUC023)	domain
KOW	PF00467.24	gi|257053371|ref|YP_003131204.1|	-	0.0044	16.6	0.1	0.02	14.5	0.0	2.2	2	0	0	2	2	2	1	KOW	motif
Peptidase_S24	PF00717.18	gi|257053371|ref|YP_003131204.1|	-	0.0077	15.8	0.0	0.021	14.4	0.0	1.8	2	0	0	2	2	2	1	Peptidase	S24-like
S4	PF01479.20	gi|257053371|ref|YP_003131204.1|	-	0.027	13.8	0.0	0.049	13.0	0.0	1.5	1	0	0	1	1	1	0	S4	domain
Ribosomal_L5_C	PF00673.16	gi|257053372|ref|YP_003131205.1|	-	2.6e-21	75.1	0.0	4.2e-21	74.4	0.0	1.4	1	0	0	1	1	1	1	ribosomal	L5P	family	C-terminus
Ribosomal_L5	PF00281.14	gi|257053372|ref|YP_003131205.1|	-	1.6e-16	59.7	0.0	3.5e-16	58.7	0.0	1.5	1	0	0	1	1	1	1	Ribosomal	protein	L5
Ribosomal_S14	PF00253.16	gi|257053373|ref|YP_003131206.1|	-	2.8e-14	52.2	2.5	3.3e-14	52.0	1.7	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S14p/S29e
DUF4428	PF14471.1	gi|257053373|ref|YP_003131206.1|	-	0.00084	19.0	0.1	0.0011	18.7	0.1	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4428)
DUF2318	PF10080.4	gi|257053373|ref|YP_003131206.1|	-	0.018	14.7	0.2	0.022	14.5	0.1	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2318)
OrfB_Zn_ribbon	PF07282.6	gi|257053373|ref|YP_003131206.1|	-	0.057	13.0	0.6	0.073	12.7	0.4	1.2	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
FYVE_2	PF02318.11	gi|257053373|ref|YP_003131206.1|	-	0.074	12.9	0.2	0.08	12.8	0.2	1.1	1	0	0	1	1	1	0	FYVE-type	zinc	finger
Ribosomal_L37ae	PF01780.14	gi|257053373|ref|YP_003131206.1|	-	0.1	12.5	0.7	0.13	12.1	0.5	1.3	1	0	0	1	1	1	0	Ribosomal	L37ae	protein	family
Ribosomal_S8	PF00410.14	gi|257053374|ref|YP_003131207.1|	-	9.3e-22	77.2	0.0	1.3e-21	76.7	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S8
Ribosomal_L6	PF00347.18	gi|257053375|ref|YP_003131208.1|	-	2.2e-22	79.3	0.0	1.5e-11	44.5	0.0	2.1	2	0	0	2	2	2	2	Ribosomal	protein	L6
Ribosomal_L32e	PF01655.13	gi|257053376|ref|YP_003131209.1|	-	9e-38	128.7	1.0	2.2e-37	127.4	0.5	1.8	2	0	0	2	2	2	1	Ribosomal	protein	L32
HHH_5	PF14520.1	gi|257053376|ref|YP_003131209.1|	-	2.5e-30	104.4	16.2	7.5e-16	58.0	0.9	3.8	4	0	0	4	4	4	3	Helix-hairpin-helix	domain
DNA_pol_lambd_f	PF10391.4	gi|257053376|ref|YP_003131209.1|	-	1.1e-16	60.1	0.1	4.7e-07	29.2	0.0	2.7	2	0	0	2	2	2	2	Fingers	domain	of	DNA	polymerase	lambda
HHH	PF00633.18	gi|257053376|ref|YP_003131209.1|	-	3.2e-14	51.7	8.7	0.0044	16.6	0.1	5.2	5	0	0	5	5	5	4	Helix-hairpin-helix	motif
HHH_2	PF12826.2	gi|257053376|ref|YP_003131209.1|	-	8.2e-14	51.2	10.1	1.2e-06	28.3	0.4	3.6	3	2	1	4	4	4	2	Helix-hairpin-helix	motif
Cdd1	PF11731.3	gi|257053376|ref|YP_003131209.1|	-	2.2e-10	40.2	0.1	0.0023	17.7	0.0	3.7	3	2	2	5	5	5	2	Pathogenicity	locus
HHH_8	PF14716.1	gi|257053376|ref|YP_003131209.1|	-	1.1e-08	35.1	1.1	0.6	10.3	0.0	4.5	3	1	1	4	4	4	3	Helix-hairpin-helix	domain
HHH_3	PF12836.2	gi|257053376|ref|YP_003131209.1|	-	1.2e-08	34.7	0.7	0.16	11.9	0.0	5.2	3	2	2	5	5	5	2	Helix-hairpin-helix	motif
IMS_HHH	PF11798.3	gi|257053376|ref|YP_003131209.1|	-	6.2e-06	25.9	0.0	8	6.7	0.0	4.4	4	0	0	4	4	4	0	IMS	family	HHH	motif
BAF	PF02961.9	gi|257053376|ref|YP_003131209.1|	-	2.9e-05	24.2	0.3	5.5	7.3	0.0	4.2	3	1	1	4	4	4	1	Barrier	to	autointegration	factor
DUF4332	PF14229.1	gi|257053376|ref|YP_003131209.1|	-	4.4e-05	23.4	0.0	0.28	11.1	0.0	2.6	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF4332)
Transposase_20	PF02371.11	gi|257053376|ref|YP_003131209.1|	-	9.5e-05	22.4	0.1	0.61	10.2	0.0	3.8	4	0	0	4	4	4	1	Transposase	IS116/IS110/IS902	family
RNA_pol_A_CTD	PF03118.10	gi|257053376|ref|YP_003131209.1|	-	0.0011	18.3	0.0	0.76	9.2	0.0	2.5	2	0	0	2	2	2	2	Bacterial	RNA	polymerase,	alpha	chain	C	terminal	domain
DUF3701	PF12482.3	gi|257053376|ref|YP_003131209.1|	-	0.0028	17.3	0.5	2.8	7.7	0.0	2.7	2	0	0	2	2	2	2	Phage	integrase	protein
ThiC	PF01964.13	gi|257053376|ref|YP_003131209.1|	-	0.01	14.3	0.7	0.72	8.2	0.0	2.2	2	0	0	2	2	2	0	ThiC	family
HhH-GPD	PF00730.20	gi|257053376|ref|YP_003131209.1|	-	0.015	15.5	0.1	7.7	6.8	0.0	3.1	2	1	0	3	3	3	0	HhH-GPD	superfamily	base	excision	DNA	repair	protein
LytR_C	PF13399.1	gi|257053376|ref|YP_003131209.1|	-	0.022	15.1	10.6	0.66	10.3	0.6	3.8	3	2	1	4	4	4	0	LytR	cell	envelope-related	transcriptional	attenuator
HHH_6	PF14579.1	gi|257053376|ref|YP_003131209.1|	-	0.053	13.5	2.7	8	6.5	0.0	4.4	3	2	2	5	5	5	0	Helix-hairpin-helix	motif
Ribosomal_S13	PF00416.17	gi|257053376|ref|YP_003131209.1|	-	0.071	13.5	7.7	19	5.7	0.1	4.7	3	2	1	4	4	4	0	Ribosomal	protein	S13/S18
TfoX_C	PF04994.8	gi|257053376|ref|YP_003131209.1|	-	0.11	12.3	0.0	6.1	6.8	0.0	2.5	2	0	0	2	2	2	0	TfoX	C-terminal	domain
Sec63	PF02889.11	gi|257053376|ref|YP_003131209.1|	-	0.12	11.5	0.0	0.59	9.2	0.0	1.8	2	0	0	2	2	2	0	Sec63	Brl	domain
DUF3486	PF11985.3	gi|257053376|ref|YP_003131209.1|	-	0.16	11.9	11.6	0.26	11.3	1.3	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3486)
Ribosomal_L19e	PF01280.15	gi|257053377|ref|YP_003131210.1|	-	1.9e-51	173.7	2.8	2.1e-51	173.6	2.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L19e
Dabb	PF07876.7	gi|257053377|ref|YP_003131210.1|	-	0.048	14.1	0.0	0.095	13.1	0.0	1.4	1	0	0	1	1	1	0	Stress	responsive	A/B	Barrel	Domain
eIF-3_zeta	PF05091.7	gi|257053377|ref|YP_003131210.1|	-	0.11	11.0	1.7	0.13	10.8	1.2	1.0	1	0	0	1	1	1	0	Eukaryotic	translation	initiation	factor	3	subunit	7	(eIF-3)
Ribosomal_L18p	PF00861.17	gi|257053378|ref|YP_003131211.1|	-	2e-32	111.9	0.0	2.5e-32	111.5	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	L18p/L5e	family
Ribosomal_S5	PF00333.15	gi|257053379|ref|YP_003131212.1|	-	2.2e-28	97.7	1.1	3.6e-28	97.1	0.8	1.3	1	0	0	1	1	1	1	Ribosomal	protein	S5,	N-terminal	domain
Ribosomal_S5_C	PF03719.10	gi|257053379|ref|YP_003131212.1|	-	5.3e-24	83.3	0.1	8.1e-24	82.7	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	protein	S5,	C-terminal	domain
Ribosomal_L30	PF00327.15	gi|257053380|ref|YP_003131213.1|	-	1.4e-11	43.8	0.0	2.7e-11	42.8	0.0	1.4	1	0	0	1	1	1	1	Ribosomal	protein	L30p/L7e
Ribosomal_L18e	PF00828.14	gi|257053381|ref|YP_003131214.1|	-	6.3e-25	88.0	0.9	9e-25	87.5	0.6	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L18e/L15
SecY	PF00344.15	gi|257053382|ref|YP_003131215.1|	-	7.6e-90	301.3	23.0	7.6e-90	301.3	15.9	1.5	2	0	0	2	2	2	1	SecY	translocase
Plug_translocon	PF10559.4	gi|257053382|ref|YP_003131215.1|	-	6e-06	25.6	1.6	1.7e-05	24.2	1.1	1.9	1	0	0	1	1	1	1	Plug	domain	of	Sec61p
Ferrochelatase	PF00762.14	gi|257053383|ref|YP_003131216.1|	-	1.1e-69	234.8	0.0	1.3e-69	234.5	0.0	1.0	1	0	0	1	1	1	1	Ferrochelatase
CbiX	PF01903.12	gi|257053383|ref|YP_003131216.1|	-	2.6e-05	24.2	0.0	0.00081	19.4	0.0	2.5	2	0	0	2	2	2	1	CbiX
Glyco_trans_4_4	PF13579.1	gi|257053383|ref|YP_003131216.1|	-	0.0009	19.4	1.4	0.1	12.7	0.3	2.3	2	0	0	2	2	2	2	Glycosyl	transferase	4-like	domain
URO-D	PF01208.12	gi|257053384|ref|YP_003131217.1|	-	3.9e-108	361.4	0.0	4.3e-108	361.2	0.0	1.0	1	0	0	1	1	1	1	Uroporphyrinogen	decarboxylase	(URO-D)
HATPase_c	PF02518.21	gi|257053385|ref|YP_003131218.1|	-	1.1e-17	63.7	0.0	2.5e-17	62.6	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.20	gi|257053385|ref|YP_003131218.1|	-	1.8e-13	50.2	0.1	9.7e-13	47.9	0.0	2.3	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_4	PF08448.5	gi|257053385|ref|YP_003131218.1|	-	3.4e-10	39.9	0.3	1.1e-09	38.3	0.0	2.0	2	0	0	2	2	2	1	PAS	fold
DUF1349	PF07081.6	gi|257053385|ref|YP_003131218.1|	-	5.5e-06	25.8	0.0	2.5e-05	23.7	0.0	1.9	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1349)
HATPase_c_3	PF13589.1	gi|257053385|ref|YP_003131218.1|	-	0.0024	17.5	0.0	0.0072	15.9	0.0	1.9	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_9	PF13426.1	gi|257053385|ref|YP_003131218.1|	-	0.0049	17.2	0.0	0.014	15.7	0.0	1.8	1	0	0	1	1	1	1	PAS	domain
H_kinase_N	PF12282.3	gi|257053385|ref|YP_003131218.1|	-	0.0052	16.4	1.6	0.1	12.2	0.0	2.4	2	0	0	2	2	2	1	Signal	transduction	histidine	kinase
OKR_DC_1_N	PF03709.10	gi|257053385|ref|YP_003131218.1|	-	0.12	12.4	0.4	0.31	11.1	0.3	1.7	1	0	0	1	1	1	0	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
ADK	PF00406.17	gi|257053386|ref|YP_003131219.1|	-	2.2e-43	147.7	0.0	2.6e-43	147.4	0.0	1.1	1	0	0	1	1	1	1	Adenylate	kinase
ADK_lid	PF05191.9	gi|257053386|ref|YP_003131219.1|	-	6.3e-18	64.1	2.9	1e-17	63.4	2.0	1.3	1	0	0	1	1	1	1	Adenylate	kinase,	active	site	lid
AAA_17	PF13207.1	gi|257053386|ref|YP_003131219.1|	-	3.7e-07	30.9	0.5	1.2e-06	29.2	0.3	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.1	gi|257053386|ref|YP_003131219.1|	-	9.4e-05	22.3	0.0	0.00018	21.3	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_18	PF13238.1	gi|257053386|ref|YP_003131219.1|	-	0.0003	21.1	0.0	0.00054	20.2	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
TF_Zn_Ribbon	PF08271.7	gi|257053386|ref|YP_003131219.1|	-	0.0011	18.2	1.9	0.0031	16.8	1.3	1.8	1	0	0	1	1	1	1	TFIIB	zinc-binding
zf-IS66	PF13005.2	gi|257053386|ref|YP_003131219.1|	-	0.032	14.1	1.0	0.68	9.9	0.1	2.4	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
GFA	PF04828.9	gi|257053386|ref|YP_003131219.1|	-	0.042	13.8	0.1	1.3	9.0	0.0	2.2	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
DZR	PF12773.2	gi|257053386|ref|YP_003131219.1|	-	0.042	13.6	0.9	0.084	12.7	0.6	1.4	1	1	0	1	1	1	0	Double	zinc	ribbon
HypA	PF01155.14	gi|257053386|ref|YP_003131219.1|	-	0.043	13.5	0.2	0.068	12.8	0.2	1.3	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
Zeta_toxin	PF06414.7	gi|257053386|ref|YP_003131219.1|	-	0.061	12.4	0.0	0.16	11.0	0.0	1.8	1	1	0	1	1	1	0	Zeta	toxin
A2L_zn_ribbon	PF08792.5	gi|257053386|ref|YP_003131219.1|	-	0.07	12.6	3.7	0.93	9.0	0.2	2.3	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
RuvB_N	PF05496.7	gi|257053386|ref|YP_003131219.1|	-	0.085	11.8	0.0	0.14	11.2	0.0	1.3	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	ruvB	N-terminus
PduV-EutP	PF10662.4	gi|257053386|ref|YP_003131219.1|	-	0.11	12.0	0.0	0.24	10.8	0.0	1.6	1	1	0	1	1	1	0	Ethanolamine	utilisation	-	propanediol	utilisation
Zn-ribbon_8	PF09723.5	gi|257053386|ref|YP_003131219.1|	-	0.12	12.3	1.3	0.27	11.2	0.9	1.6	1	0	0	1	1	1	0	Zinc	ribbon	domain
Nudix_N_2	PF14803.1	gi|257053386|ref|YP_003131219.1|	-	0.14	11.8	2.7	8.7	6.1	0.1	2.3	2	0	0	2	2	2	0	Nudix	N-terminal
zf-C4_Topoisom	PF01396.14	gi|257053386|ref|YP_003131219.1|	-	0.17	11.3	0.9	0.34	10.4	0.1	1.8	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
Prok-RING_1	PF14446.1	gi|257053386|ref|YP_003131219.1|	-	0.56	9.9	2.6	14	5.5	0.1	2.2	2	0	0	2	2	2	0	Prokaryotic	RING	finger	family	1
DUF106	PF01956.11	gi|257053387|ref|YP_003131220.1|	-	6.9e-43	146.0	0.8	9.4e-43	145.6	0.6	1.1	1	0	0	1	1	1	1	Integral	membrane	protein	DUF106
60KD_IMP	PF02096.15	gi|257053387|ref|YP_003131220.1|	-	3e-06	27.0	0.2	5.2e-06	26.2	0.2	1.4	1	0	0	1	1	1	1	60Kd	inner	membrane	protein
Cytidylate_kin2	PF13189.1	gi|257053388|ref|YP_003131221.1|	-	3.6e-21	75.8	1.1	8.3e-20	71.4	0.8	2.0	1	1	0	1	1	1	1	Cytidylate	kinase-like	family
AAA_18	PF13238.1	gi|257053388|ref|YP_003131221.1|	-	2.1e-16	60.4	0.0	2.9e-16	59.9	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|257053388|ref|YP_003131221.1|	-	4.4e-15	56.5	1.0	7.2e-15	55.8	0.7	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.1	gi|257053388|ref|YP_003131221.1|	-	3.6e-10	39.8	0.3	9.1e-09	35.3	0.2	2.1	1	1	0	1	1	1	1	AAA	domain
SKI	PF01202.17	gi|257053388|ref|YP_003131221.1|	-	2.3e-07	30.8	1.6	8.1e-07	29.0	1.1	1.8	1	1	0	1	1	1	1	Shikimate	kinase
ADK	PF00406.17	gi|257053388|ref|YP_003131221.1|	-	2.5e-05	24.2	0.1	7.6e-05	22.6	0.0	1.8	1	1	1	2	2	2	1	Adenylate	kinase
AAA_16	PF13191.1	gi|257053388|ref|YP_003131221.1|	-	0.0002	21.3	0.8	0.00052	20.0	0.5	1.8	1	1	0	1	1	1	1	AAA	ATPase	domain
Cytidylate_kin	PF02224.13	gi|257053388|ref|YP_003131221.1|	-	0.00024	20.6	0.5	0.00032	20.1	0.4	1.2	1	0	0	1	1	1	1	Cytidylate	kinase
AAA_28	PF13521.1	gi|257053388|ref|YP_003131221.1|	-	0.00024	21.0	0.1	0.0015	18.4	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
NACHT	PF05729.7	gi|257053388|ref|YP_003131221.1|	-	0.00036	20.2	0.0	0.00055	19.6	0.0	1.3	1	0	0	1	1	1	1	NACHT	domain
AAA_22	PF13401.1	gi|257053388|ref|YP_003131221.1|	-	0.0021	18.2	0.0	0.005	16.9	0.0	1.8	2	1	0	2	2	2	1	AAA	domain
AAA_25	PF13481.1	gi|257053388|ref|YP_003131221.1|	-	0.0024	17.2	0.3	0.0039	16.6	0.2	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_19	PF13245.1	gi|257053388|ref|YP_003131221.1|	-	0.011	15.5	0.0	0.024	14.3	0.0	1.6	1	0	0	1	1	1	0	Part	of	AAA	domain
AAA_30	PF13604.1	gi|257053388|ref|YP_003131221.1|	-	0.011	15.3	0.3	0.066	12.7	0.1	2.1	1	1	1	2	2	2	0	AAA	domain
CoaE	PF01121.15	gi|257053388|ref|YP_003131221.1|	-	0.012	15.0	0.1	0.27	10.6	0.0	2.1	2	0	0	2	2	2	0	Dephospho-CoA	kinase
CbiA	PF01656.18	gi|257053388|ref|YP_003131221.1|	-	0.013	14.9	0.1	0.019	14.3	0.1	1.5	1	1	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
RNA_helicase	PF00910.17	gi|257053388|ref|YP_003131221.1|	-	0.015	15.5	0.0	0.023	14.8	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
ABC_tran	PF00005.22	gi|257053388|ref|YP_003131221.1|	-	0.018	15.3	0.0	0.024	14.9	0.0	1.5	1	1	0	1	1	1	0	ABC	transporter
AAA	PF00004.24	gi|257053388|ref|YP_003131221.1|	-	0.018	15.2	0.0	0.028	14.6	0.0	1.4	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Thymidylate_kin	PF02223.12	gi|257053388|ref|YP_003131221.1|	-	0.019	14.3	0.5	5.3	6.3	0.1	2.3	2	1	0	2	2	2	0	Thymidylate	kinase
AAA_23	PF13476.1	gi|257053388|ref|YP_003131221.1|	-	0.02	15.2	0.0	0.027	14.7	0.0	1.3	1	1	0	1	1	1	0	AAA	domain
AAA_29	PF13555.1	gi|257053388|ref|YP_003131221.1|	-	0.02	14.4	0.1	0.037	13.5	0.1	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
T2SE	PF00437.15	gi|257053388|ref|YP_003131221.1|	-	0.036	12.9	0.2	0.063	12.1	0.1	1.5	1	1	0	1	1	1	0	Type	II/IV	secretion	system	protein
PRK	PF00485.13	gi|257053388|ref|YP_003131221.1|	-	0.044	13.3	0.1	0.21	11.1	0.0	2.0	1	1	1	2	2	2	0	Phosphoribulokinase	/	Uridine	kinase	family
DUF2075	PF09848.4	gi|257053388|ref|YP_003131221.1|	-	0.065	12.1	0.0	0.1	11.5	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
KTI12	PF08433.5	gi|257053388|ref|YP_003131221.1|	-	0.067	12.3	0.0	0.095	11.8	0.0	1.4	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
ATP_bind_1	PF03029.12	gi|257053388|ref|YP_003131221.1|	-	0.067	12.7	0.0	0.11	12.0	0.0	1.3	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
AAA_5	PF07728.9	gi|257053388|ref|YP_003131221.1|	-	0.081	12.6	0.0	0.18	11.5	0.0	1.5	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
MobB	PF03205.9	gi|257053388|ref|YP_003131221.1|	-	0.084	12.5	0.0	0.15	11.7	0.0	1.4	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
CobU	PF02283.11	gi|257053388|ref|YP_003131221.1|	-	0.099	12.0	0.1	0.24	10.7	0.0	1.6	2	0	0	2	2	2	0	Cobinamide	kinase	/	cobinamide	phosphate	guanyltransferase
NTPase_1	PF03266.10	gi|257053388|ref|YP_003131221.1|	-	0.12	12.0	0.0	0.19	11.4	0.0	1.3	1	0	0	1	1	1	0	NTPase
NB-ARC	PF00931.17	gi|257053388|ref|YP_003131221.1|	-	0.15	10.9	0.1	0.25	10.1	0.0	1.4	1	1	0	1	1	1	0	NB-ARC	domain
AAA_10	PF12846.2	gi|257053388|ref|YP_003131221.1|	-	0.18	11.1	1.1	0.23	10.8	0.0	1.7	2	1	0	2	2	2	0	AAA-like	domain
TruB_N	PF01509.13	gi|257053389|ref|YP_003131222.1|	-	2e-24	86.4	0.1	1.7e-14	54.1	0.0	3.2	1	1	1	2	2	2	2	TruB	family	pseudouridylate	synthase	(N	terminal	domain)
DKCLD	PF08068.7	gi|257053389|ref|YP_003131222.1|	-	3.1e-08	33.4	0.0	5.8e-08	32.5	0.0	1.4	1	0	0	1	1	1	1	DKCLD	(NUC011)	domain
PUA	PF01472.15	gi|257053389|ref|YP_003131222.1|	-	2.4e-06	27.1	0.1	4.8e-06	26.2	0.1	1.6	1	0	0	1	1	1	1	PUA	domain
Zn-ribbon_8	PF09723.5	gi|257053391|ref|YP_003131224.1|	-	0.00039	20.2	1.7	0.00074	19.4	1.2	1.5	1	1	0	1	1	1	1	Zinc	ribbon	domain
zf-C3HC	PF07967.8	gi|257053391|ref|YP_003131224.1|	-	0.0008	19.1	0.3	0.0008	19.1	0.2	1.0	1	0	0	1	1	1	1	C3HC	zinc	finger-like
DNA_RNApol_7kD	PF03604.8	gi|257053391|ref|YP_003131224.1|	-	0.0028	17.1	0.5	0.0042	16.5	0.4	1.3	1	0	0	1	1	1	1	DNA	directed	RNA	polymerase,	7	kDa	subunit
HypA	PF01155.14	gi|257053391|ref|YP_003131224.1|	-	0.0039	16.8	0.4	0.0042	16.7	0.3	1.0	1	0	0	1	1	1	1	Hydrogenase	expression/synthesis	hypA	family
DZR	PF12773.2	gi|257053391|ref|YP_003131224.1|	-	0.021	14.6	0.7	0.022	14.5	0.5	1.2	1	0	0	1	1	1	0	Double	zinc	ribbon
A2L_zn_ribbon	PF08792.5	gi|257053391|ref|YP_003131224.1|	-	0.056	12.9	0.3	1.3	8.5	0.0	2.1	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
Cys_rich_CPCC	PF14206.1	gi|257053391|ref|YP_003131224.1|	-	0.084	12.4	0.5	0.1	12.1	0.4	1.3	1	0	0	1	1	1	0	Cysteine-rich	CPCC
RRN7	PF11781.3	gi|257053391|ref|YP_003131224.1|	-	0.087	12.3	4.0	0.51	9.8	0.3	2.1	1	1	1	2	2	2	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
OrfB_Zn_ribbon	PF07282.6	gi|257053391|ref|YP_003131224.1|	-	0.11	12.1	2.1	0.19	11.4	1.3	1.5	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Prim_Zn_Ribbon	PF08273.7	gi|257053391|ref|YP_003131224.1|	-	0.12	12.4	4.8	0.13	12.3	0.4	2.1	2	0	0	2	2	2	0	Zinc-binding	domain	of	primase-helicase
Ribosomal_S27e	PF01667.12	gi|257053391|ref|YP_003131224.1|	-	0.17	11.4	1.3	0.39	10.3	0.9	1.6	1	1	0	1	1	1	0	Ribosomal	protein	S27
zf-NADH-PPase	PF09297.6	gi|257053391|ref|YP_003131224.1|	-	0.33	10.5	3.6	2.3	7.7	0.2	2.2	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
zf-HYPF	PF07503.7	gi|257053391|ref|YP_003131224.1|	-	2.1	7.8	4.5	23	4.4	3.1	2.2	1	1	1	2	2	2	0	HypF	finger
DUF2061	PF09834.4	gi|257053392|ref|YP_003131225.1|	-	1.9e-14	53.6	0.3	2.6e-14	53.1	0.2	1.2	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2061)
Lung_7-TM_R	PF06814.8	gi|257053392|ref|YP_003131225.1|	-	0.038	12.9	0.1	0.039	12.8	0.0	1.1	1	0	0	1	1	1	0	Lung	seven	transmembrane	receptor
HisKA	PF00512.20	gi|257053393|ref|YP_003131226.1|	-	0.016	15.1	0.0	0.042	13.8	0.0	1.7	1	0	0	1	1	1	0	His	Kinase	A	(phospho-acceptor)	domain
DUF1129	PF06570.6	gi|257053393|ref|YP_003131226.1|	-	0.02	14.1	0.8	0.038	13.2	0.3	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1129)
Ferric_reduct	PF01794.14	gi|257053393|ref|YP_003131226.1|	-	0.03	14.4	2.7	0.05	13.6	1.9	1.2	1	0	0	1	1	1	0	Ferric	reductase	like	transmembrane	component
Hpt	PF01627.18	gi|257053393|ref|YP_003131226.1|	-	0.039	13.9	0.2	0.34	10.9	0.0	2.4	2	0	0	2	2	2	0	Hpt	domain
DUF3366	PF11846.3	gi|257053393|ref|YP_003131226.1|	-	0.16	11.7	1.2	1.4	8.7	0.2	2.3	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3366)
Syntaxin-6_N	PF09177.6	gi|257053393|ref|YP_003131226.1|	-	0.19	12.1	0.9	0.34	11.3	0.6	1.4	1	0	0	1	1	1	0	Syntaxin	6,	N-terminal
DUF3708	PF12501.3	gi|257053393|ref|YP_003131226.1|	-	0.21	11.4	4.0	1.1	9.0	1.1	2.3	1	1	1	2	2	2	0	Phosphate	ATP-binding	cassette	transporter
DUF3681	PF12442.3	gi|257053393|ref|YP_003131226.1|	-	0.24	11.6	3.9	0.5	10.5	2.7	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3681)
BLOC1_2	PF10046.4	gi|257053393|ref|YP_003131226.1|	-	0.31	11.1	1.2	0.9	9.7	0.6	1.9	1	1	1	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
DUF2269	PF10027.4	gi|257053393|ref|YP_003131226.1|	-	0.67	9.7	8.5	1.6	8.5	0.0	2.5	3	0	0	3	3	3	0	Predicted	integral	membrane	protein	(DUF2269)
T2SM	PF04612.7	gi|257053393|ref|YP_003131226.1|	-	5.6	6.7	7.9	1	9.1	0.3	3.2	3	1	1	4	4	4	0	Type	II	secretion	system	(T2SS),	protein	M
Usp	PF00582.21	gi|257053394|ref|YP_003131227.1|	-	6e-27	94.5	1.2	6.8e-27	94.3	0.8	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
DUF849	PF05853.7	gi|257053394|ref|YP_003131227.1|	-	0.034	13.0	0.1	0.042	12.7	0.0	1.2	1	0	0	1	1	1	0	Prokaryotic	protein	of	unknown	function	(DUF849)
PHO4	PF01384.15	gi|257053395|ref|YP_003131228.1|	-	1.6e-59	201.1	34.8	7.5e-58	195.7	21.3	2.0	2	0	0	2	2	2	2	Phosphate	transporter	family
FtsX	PF02687.16	gi|257053395|ref|YP_003131228.1|	-	0.0031	17.2	6.0	0.0031	17.2	4.2	3.9	2	2	0	3	3	3	1	FtsX-like	permease	family
E1-E2_ATPase	PF00122.15	gi|257053396|ref|YP_003131229.1|	-	3.3e-71	238.9	4.1	7.2e-71	237.8	2.8	1.6	1	0	0	1	1	1	1	E1-E2	ATPase
Cation_ATPase_C	PF00689.16	gi|257053396|ref|YP_003131229.1|	-	3.8e-39	134.0	7.1	3.8e-39	134.0	4.9	2.2	2	0	0	2	2	2	1	Cation	transporting	ATPase,	C-terminus
Hydrolase	PF00702.21	gi|257053396|ref|YP_003131229.1|	-	1.2e-33	117.3	0.0	4.3e-33	115.5	0.0	2.0	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Cation_ATPase_N	PF00690.21	gi|257053396|ref|YP_003131229.1|	-	3.4e-20	71.2	0.0	7.7e-20	70.1	0.0	1.7	1	0	0	1	1	1	1	Cation	transporter/ATPase,	N-terminus
HAD	PF12710.2	gi|257053396|ref|YP_003131229.1|	-	2.8e-18	66.7	0.0	6.4e-18	65.6	0.0	1.7	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like2	PF13246.1	gi|257053396|ref|YP_003131229.1|	-	2.9e-18	65.5	0.0	6.5e-18	64.4	0.0	1.6	1	0	0	1	1	1	1	Putative	hydrolase	of	sodium-potassium	ATPase	alpha	subunit
Hydrolase_3	PF08282.7	gi|257053396|ref|YP_003131229.1|	-	1.3e-05	24.9	0.5	0.012	15.1	0.3	2.2	1	1	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
DUF1508	PF07411.7	gi|257053397|ref|YP_003131230.1|	-	2.9e-21	74.6	0.2	3.5e-21	74.3	0.1	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1508)
HupF_HypC	PF01455.13	gi|257053398|ref|YP_003131231.1|	-	9.9e-21	73.5	0.2	1.5e-20	72.9	0.2	1.3	1	0	0	1	1	1	1	HupF/HypC	family
HypD	PF01924.11	gi|257053399|ref|YP_003131232.1|	-	7.8e-134	445.9	0.0	8.8e-134	445.7	0.0	1.0	1	0	0	1	1	1	1	Hydrogenase	formation	hypA	family
MtrH	PF02007.13	gi|257053399|ref|YP_003131232.1|	-	0.12	11.3	0.0	0.2	10.6	0.0	1.2	1	0	0	1	1	1	0	Tetrahydromethanopterin	S-methyltransferase	MtrH	subunit
AIRS_C	PF02769.17	gi|257053400|ref|YP_003131233.1|	-	1.8e-24	86.5	2.4	3e-24	85.7	1.7	1.4	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.19	gi|257053400|ref|YP_003131233.1|	-	3.1e-15	56.1	0.3	9.3e-15	54.6	0.2	1.8	1	0	0	1	1	1	1	AIR	synthase	related	protein,	N-terminal	domain
HypA	PF01155.14	gi|257053401|ref|YP_003131234.1|	-	2.5e-20	72.2	0.0	2.9e-20	72.0	0.0	1.0	1	0	0	1	1	1	1	Hydrogenase	expression/synthesis	hypA	family
cobW	PF02492.14	gi|257053402|ref|YP_003131235.1|	-	4.5e-33	114.1	0.1	5.9e-33	113.7	0.0	1.1	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
ArgK	PF03308.11	gi|257053402|ref|YP_003131235.1|	-	2.2e-06	26.6	0.0	0.00022	20.1	0.0	2.1	2	0	0	2	2	2	1	ArgK	protein
DUF87	PF01935.12	gi|257053402|ref|YP_003131235.1|	-	0.0013	18.5	0.0	0.0022	17.8	0.0	1.5	1	1	0	1	1	1	1	Domain	of	unknown	function	DUF87
AAA_16	PF13191.1	gi|257053402|ref|YP_003131235.1|	-	0.0029	17.6	0.0	0.0069	16.3	0.0	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
MobB	PF03205.9	gi|257053402|ref|YP_003131235.1|	-	0.0088	15.7	0.0	0.028	14.1	0.0	1.9	1	1	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
GTP_EFTU	PF00009.22	gi|257053402|ref|YP_003131235.1|	-	0.031	13.7	0.0	3.6	6.9	0.0	2.4	2	0	0	2	2	2	0	Elongation	factor	Tu	GTP	binding	domain
T2SE	PF00437.15	gi|257053402|ref|YP_003131235.1|	-	0.033	13.0	0.0	0.051	12.4	0.0	1.2	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
TrwB_AAD_bind	PF10412.4	gi|257053402|ref|YP_003131235.1|	-	0.049	12.2	0.0	0.069	11.7	0.0	1.1	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_33	PF13671.1	gi|257053402|ref|YP_003131235.1|	-	0.049	13.5	0.0	0.1	12.4	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
PduV-EutP	PF10662.4	gi|257053402|ref|YP_003131235.1|	-	0.061	12.8	0.0	7.2	6.0	0.0	2.2	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_22	PF13401.1	gi|257053402|ref|YP_003131235.1|	-	0.07	13.2	0.0	0.14	12.3	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_18	PF13238.1	gi|257053402|ref|YP_003131235.1|	-	0.14	12.5	0.0	0.28	11.5	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_10	PF12846.2	gi|257053402|ref|YP_003131235.1|	-	0.16	11.4	0.0	0.23	10.8	0.0	1.4	1	0	0	1	1	1	0	AAA-like	domain
Ribonuc_red_sm	PF00268.16	gi|257053403|ref|YP_003131236.1|	-	5.4e-42	143.7	0.0	3e-41	141.3	0.0	1.8	1	1	0	1	1	1	1	Ribonucleotide	reductase,	small	chain
Ribonuc_red_lgC	PF02867.10	gi|257053404|ref|YP_003131237.1|	-	2.7e-190	633.4	0.0	3.3e-190	633.2	0.0	1.1	1	0	0	1	1	1	1	Ribonucleotide	reductase,	barrel	domain
Ribonuc_red_lgN	PF00317.16	gi|257053404|ref|YP_003131237.1|	-	1.1e-22	79.5	0.7	2.6e-22	78.3	0.0	2.0	2	0	0	2	2	2	1	Ribonucleotide	reductase,	all-alpha	domain
ATP-cone	PF03477.11	gi|257053405|ref|YP_003131238.1|	-	5e-20	71.7	0.3	6.3e-20	71.3	0.2	1.1	1	0	0	1	1	1	1	ATP	cone	domain
Zn_Tnp_IS1595	PF12760.2	gi|257053405|ref|YP_003131238.1|	-	0.0025	17.5	0.5	0.004	16.9	0.3	1.3	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
Lar_restr_allev	PF14354.1	gi|257053405|ref|YP_003131238.1|	-	0.018	15.3	0.4	0.033	14.4	0.2	1.5	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
Metal_resist	PF13801.1	gi|257053405|ref|YP_003131238.1|	-	0.054	13.4	2.5	0.23	11.4	0.3	2.5	2	1	1	3	3	3	0	Heavy-metal	resistance
zf-C2H2_4	PF13894.1	gi|257053405|ref|YP_003131238.1|	-	0.063	13.6	2.3	0.12	12.7	0.3	2.3	2	0	0	2	2	2	0	C2H2-type	zinc	finger
TFIIS_C	PF01096.13	gi|257053405|ref|YP_003131238.1|	-	0.17	11.5	2.2	1.2	8.8	1.5	2.1	1	1	0	1	1	1	0	Transcription	factor	S-II	(TFIIS)
Zn-ribbon_8	PF09723.5	gi|257053405|ref|YP_003131238.1|	-	0.17	11.8	1.6	11	6.0	0.1	2.4	2	0	0	2	2	2	0	Zinc	ribbon	domain
zf-C2H2	PF00096.21	gi|257053405|ref|YP_003131238.1|	-	0.2	12.0	3.2	1	9.8	0.1	2.5	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
DUF3797	PF12677.2	gi|257053405|ref|YP_003131238.1|	-	0.87	9.2	3.9	4	7.1	2.7	2.0	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF3797)
MFS_1	PF07690.11	gi|257053406|ref|YP_003131239.1|	-	9.6e-30	103.4	64.6	7.6e-28	97.2	24.4	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
NPCC	PF08058.6	gi|257053406|ref|YP_003131239.1|	-	0.043	13.6	0.7	1	9.1	0.1	2.3	2	0	0	2	2	2	0	Nuclear	pore	complex	component
MFS_1	PF07690.11	gi|257053407|ref|YP_003131240.1|	-	3.7e-33	114.7	68.4	3.8e-28	98.2	28.0	2.2	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
DUF1228	PF06779.9	gi|257053407|ref|YP_003131240.1|	-	0.0047	16.9	1.3	0.0047	16.9	0.9	3.7	4	0	0	4	4	4	2	Protein	of	unknown	function	(DUF1228)
Sua5_yciO_yrdC	PF01300.13	gi|257053408|ref|YP_003131241.1|	-	3.6e-46	156.6	0.0	7.4e-46	155.6	0.0	1.5	1	0	0	1	1	1	1	Telomere	recombination
zf-HYPF	PF07503.7	gi|257053408|ref|YP_003131241.1|	-	8.3e-29	98.7	9.2	7.4e-17	60.4	1.7	2.4	2	0	0	2	2	2	2	HypF	finger
Acylphosphatase	PF00708.13	gi|257053408|ref|YP_003131241.1|	-	4.1e-24	84.4	0.0	8e-24	83.5	0.0	1.5	1	0	0	1	1	1	1	Acylphosphatase
DZR	PF12773.2	gi|257053408|ref|YP_003131241.1|	-	0.012	15.4	2.5	1.9	8.3	0.2	2.4	2	0	0	2	2	2	0	Double	zinc	ribbon
Peptidase_M22	PF00814.20	gi|257053408|ref|YP_003131241.1|	-	0.032	13.7	0.2	0.08	12.4	0.0	1.8	2	0	0	2	2	2	0	Glycoprotease	family
Acetate_kinase	PF00871.12	gi|257053408|ref|YP_003131241.1|	-	0.24	9.9	0.1	0.4	9.1	0.1	1.3	1	0	0	1	1	1	0	Acetokinase	family
MatE	PF01554.13	gi|257053409|ref|YP_003131242.1|	-	4.2e-47	159.7	27.6	1.4e-23	83.3	7.9	2.4	2	0	0	2	2	2	2	MatE
Polysacc_synt_C	PF14667.1	gi|257053409|ref|YP_003131242.1|	-	7.2e-12	45.3	6.9	7.2e-12	45.3	4.8	5.0	3	1	2	5	5	5	2	Polysaccharide	biosynthesis	C-terminal	domain
TcdA_TcdB_pore	PF12920.2	gi|257053409|ref|YP_003131242.1|	-	0.9	7.3	5.6	1.8	6.3	3.9	1.4	1	0	0	1	1	1	0	TcdA/TcdB	pore	forming	domain
Complex1_49kDa	PF00346.14	gi|257053410|ref|YP_003131243.1|	-	4.6e-65	219.3	0.0	2.4e-41	141.5	0.0	2.2	1	1	1	2	2	2	2	Respiratory-chain	NADH	dehydrogenase,	49	Kd	subunit
Complex1_30kDa	PF00329.14	gi|257053410|ref|YP_003131243.1|	-	2.9e-31	107.7	0.0	5.2e-31	106.9	0.0	1.4	1	0	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	30	Kd	subunit
HTH_10	PF04967.7	gi|257053411|ref|YP_003131244.1|	-	3.2e-20	71.4	0.0	4.9e-20	70.8	0.0	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_38	PF13936.1	gi|257053411|ref|YP_003131244.1|	-	0.00014	21.3	0.0	0.00027	20.4	0.0	1.5	1	1	0	1	1	1	1	Helix-turn-helix	domain
GerE	PF00196.14	gi|257053411|ref|YP_003131244.1|	-	0.0016	17.7	0.1	0.015	14.6	0.1	2.2	1	1	0	1	1	1	1	Bacterial	regulatory	proteins,	luxR	family
MarR_2	PF12802.2	gi|257053411|ref|YP_003131244.1|	-	0.0017	18.0	0.6	0.0046	16.6	0.2	2.0	2	1	0	2	2	2	1	MarR	family
HTH_20	PF12840.2	gi|257053411|ref|YP_003131244.1|	-	0.0022	17.7	0.0	0.004	16.9	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
UPF0122	PF04297.9	gi|257053411|ref|YP_003131244.1|	-	0.015	15.2	0.0	0.028	14.4	0.0	1.4	1	0	0	1	1	1	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
HTH_24	PF13412.1	gi|257053411|ref|YP_003131244.1|	-	0.021	14.1	0.0	0.033	13.5	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Sigma70_r4	PF04545.11	gi|257053411|ref|YP_003131244.1|	-	0.028	13.7	0.0	0.11	11.8	0.0	2.0	2	1	0	2	2	2	0	Sigma-70,	region	4
HD_2	PF12917.2	gi|257053411|ref|YP_003131244.1|	-	0.035	13.8	0.0	0.046	13.4	0.0	1.2	1	0	0	1	1	1	0	HD	containing	hydrolase-like	enzyme
HTH_1	PF00126.22	gi|257053411|ref|YP_003131244.1|	-	0.063	13.0	0.0	0.15	11.8	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_5	PF01022.15	gi|257053411|ref|YP_003131244.1|	-	0.068	12.8	0.0	0.12	12.1	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_23	PF13384.1	gi|257053411|ref|YP_003131244.1|	-	0.089	12.4	0.1	0.18	11.5	0.0	1.5	1	0	0	1	1	1	0	Homeodomain-like	domain
Sigma70_r4_2	PF08281.7	gi|257053411|ref|YP_003131244.1|	-	0.11	12.0	0.1	0.31	10.5	0.1	1.9	1	1	0	1	1	1	0	Sigma-70,	region	4
Phage_terminase	PF10668.4	gi|257053411|ref|YP_003131244.1|	-	0.14	11.9	0.1	0.37	10.6	0.0	1.7	2	0	0	2	2	2	0	Phage	terminase	small	subunit
HTH_Tnp_1	PF01527.15	gi|257053411|ref|YP_003131244.1|	-	0.14	12.1	0.0	0.33	10.9	0.0	1.6	2	0	0	2	2	2	0	Transposase
Peptidase_MA_2	PF13485.1	gi|257053412|ref|YP_003131245.1|	-	0.00015	21.8	1.3	0.00022	21.2	0.1	1.8	2	0	0	2	2	2	1	Peptidase	MA	superfamily
DUF2268	PF10026.4	gi|257053412|ref|YP_003131245.1|	-	0.0051	16.1	0.0	0.0089	15.4	0.0	1.3	1	0	0	1	1	1	1	Predicted	Zn-dependent	protease	(DUF2268)
Pneumo_att_G	PF05539.6	gi|257053412|ref|YP_003131245.1|	-	0.053	12.8	24.6	0.077	12.3	17.1	1.1	1	0	0	1	1	1	0	Pneumovirinae	attachment	membrane	glycoprotein	G
ILVD_EDD	PF00920.16	gi|257053413|ref|YP_003131246.1|	-	1e-206	687.4	0.3	1.2e-206	687.2	0.2	1.0	1	0	0	1	1	1	1	Dehydratase	family
Acetyltransf_7	PF13508.1	gi|257053414|ref|YP_003131247.1|	-	1.1e-08	35.1	0.0	1.8e-08	34.4	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.19	gi|257053414|ref|YP_003131247.1|	-	8.5e-07	28.9	0.0	1.3e-06	28.2	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_9	PF13527.1	gi|257053414|ref|YP_003131247.1|	-	0.00015	21.6	0.0	0.0003	20.6	0.0	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.1	gi|257053414|ref|YP_003131247.1|	-	0.0011	19.1	0.0	0.002	18.2	0.0	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|257053414|ref|YP_003131247.1|	-	0.016	14.9	0.0	0.027	14.2	0.0	1.3	1	0	0	1	1	1	0	FR47-like	protein
GAF	PF01590.21	gi|257053416|ref|YP_003131249.1|	-	2.3e-09	37.5	0.0	6.4e-09	36.1	0.0	1.7	1	0	0	1	1	1	1	GAF	domain
GAF_3	PF13492.1	gi|257053416|ref|YP_003131249.1|	-	5.1e-08	33.0	0.1	1.3e-07	31.7	0.0	1.7	2	0	0	2	2	2	1	GAF	domain
GAF_2	PF13185.1	gi|257053416|ref|YP_003131249.1|	-	0.0032	17.9	0.2	0.009	16.5	0.0	1.8	2	0	0	2	2	2	1	GAF	domain
GlcNAc_2-epim	PF07221.6	gi|257053416|ref|YP_003131249.1|	-	0.12	11.3	0.0	1.4	7.8	0.0	2.0	2	0	0	2	2	2	0	N-acylglucosamine	2-epimerase	(GlcNAc	2-epimerase)
PAS_4	PF08448.5	gi|257053417|ref|YP_003131250.1|	-	3.5e-46	155.7	23.5	3.9e-17	62.2	0.0	6.5	6	0	0	6	6	6	5	PAS	fold
PAS_9	PF13426.1	gi|257053417|ref|YP_003131250.1|	-	7.7e-46	154.7	1.9	2.6e-20	72.7	0.0	5.8	5	0	0	5	5	5	5	PAS	domain
PAS	PF00989.19	gi|257053417|ref|YP_003131250.1|	-	3.7e-40	136.2	2.1	2.2e-18	66.1	0.0	5.9	5	1	0	5	5	5	4	PAS	fold
PAS_3	PF08447.6	gi|257053417|ref|YP_003131250.1|	-	3.1e-32	110.5	5.3	1.3e-20	73.2	0.2	5.1	5	0	0	5	5	4	2	PAS	fold
PAS_8	PF13188.1	gi|257053417|ref|YP_003131250.1|	-	7.3e-29	98.6	0.8	6.1e-07	29.0	0.0	5.8	5	0	0	5	5	5	5	PAS	domain
HATPase_c	PF02518.21	gi|257053417|ref|YP_003131250.1|	-	1.7e-23	82.4	0.0	3.6e-23	81.3	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Response_reg	PF00072.19	gi|257053417|ref|YP_003131250.1|	-	9.6e-20	70.6	0.5	4e-19	68.6	0.0	2.3	2	0	0	2	2	2	1	Response	regulator	receiver	domain
PAS_7	PF12860.2	gi|257053417|ref|YP_003131250.1|	-	2e-14	53.5	2.3	1.6e-06	28.1	0.0	5.6	5	2	0	5	5	5	2	PAS	fold
HATPase_c_2	PF13581.1	gi|257053417|ref|YP_003131250.1|	-	9e-08	31.9	0.1	3.1e-07	30.2	0.0	1.9	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HATPase_c_5	PF14501.1	gi|257053417|ref|YP_003131250.1|	-	4e-05	23.2	0.0	0.00022	20.8	0.0	2.0	2	0	0	2	2	2	1	GHKL	domain
HisKA	PF00512.20	gi|257053417|ref|YP_003131250.1|	-	0.0015	18.4	12.2	0.029	14.3	2.7	4.1	3	1	0	3	3	3	2	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_3	PF13589.1	gi|257053417|ref|YP_003131250.1|	-	0.002	17.7	0.0	0.0047	16.5	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
SPOB_a	PF14689.1	gi|257053417|ref|YP_003131250.1|	-	0.0045	16.5	3.1	0.0046	16.4	0.4	2.4	3	0	0	3	3	2	1	Sensor_kinase_SpoOB-type,	alpha-helical	domain
PAS_10	PF13596.1	gi|257053417|ref|YP_003131250.1|	-	0.022	15.0	0.1	2.4	8.4	0.0	3.7	3	0	0	3	3	3	0	PAS	domain
ATP-synt_B	PF00430.13	gi|257053417|ref|YP_003131250.1|	-	1.7	8.4	5.4	1.1	9.0	1.1	2.4	2	0	0	2	2	2	0	ATP	synthase	B/B'	CF(0)
HATPase_c	PF02518.21	gi|257053418|ref|YP_003131251.1|	-	1.5e-22	79.3	0.1	2.6e-22	78.6	0.1	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.1	gi|257053418|ref|YP_003131251.1|	-	1.2e-07	31.5	0.1	3e-07	30.2	0.1	1.7	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HisKA	PF00512.20	gi|257053418|ref|YP_003131251.1|	-	0.00011	22.1	0.4	0.00011	22.1	0.3	1.9	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_3	PF13589.1	gi|257053418|ref|YP_003131251.1|	-	0.00024	20.7	0.0	0.00044	19.9	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_5	PF14501.1	gi|257053418|ref|YP_003131251.1|	-	0.00046	19.8	0.0	0.00083	19.0	0.0	1.4	1	0	0	1	1	1	1	GHKL	domain
SPOB_a	PF14689.1	gi|257053418|ref|YP_003131251.1|	-	0.046	13.2	1.2	0.11	12.0	0.8	1.6	1	0	0	1	1	1	0	Sensor_kinase_SpoOB-type,	alpha-helical	domain
KaiC	PF06745.8	gi|257053419|ref|YP_003131252.1|	-	3.7e-68	229.0	0.0	8.8e-37	126.4	0.0	2.0	2	0	0	2	2	2	2	KaiC
AAA_25	PF13481.1	gi|257053419|ref|YP_003131252.1|	-	9.9e-24	83.8	0.1	4.6e-13	49.0	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
GvpD	PF07088.6	gi|257053419|ref|YP_003131252.1|	-	2e-10	39.6	2.4	1.6e-09	36.6	1.6	2.5	1	1	0	1	1	1	1	GvpD	gas	vesicle	protein
RecA	PF00154.16	gi|257053419|ref|YP_003131252.1|	-	2.7e-08	33.2	1.4	9.7e-05	21.5	0.1	2.3	2	0	0	2	2	2	2	recA	bacterial	DNA	recombination	protein
DnaB_C	PF03796.10	gi|257053419|ref|YP_003131252.1|	-	2.5e-06	26.5	0.0	0.024	13.5	0.0	2.3	2	0	0	2	2	2	2	DnaB-like	helicase	C	terminal	domain
AAA_14	PF13173.1	gi|257053419|ref|YP_003131252.1|	-	3.3e-06	27.0	0.0	0.029	14.2	0.0	3.0	2	1	0	2	2	2	2	AAA	domain
AAA_19	PF13245.1	gi|257053419|ref|YP_003131252.1|	-	4.2e-06	26.4	0.5	0.097	12.4	0.1	2.6	2	0	0	2	2	2	2	Part	of	AAA	domain
DUF2075	PF09848.4	gi|257053419|ref|YP_003131252.1|	-	1.5e-05	24.1	0.0	0.0057	15.6	0.0	2.2	2	0	0	2	2	2	2	Uncharacterized	conserved	protein	(DUF2075)
PAXNEB	PF05625.6	gi|257053419|ref|YP_003131252.1|	-	2.5e-05	23.2	2.7	0.051	12.3	0.3	2.3	2	0	0	2	2	2	2	PAXNEB	protein
AAA_22	PF13401.1	gi|257053419|ref|YP_003131252.1|	-	3.5e-05	23.9	0.7	0.0094	16.0	0.1	3.0	2	2	0	2	2	2	1	AAA	domain
T2SE	PF00437.15	gi|257053419|ref|YP_003131252.1|	-	4.3e-05	22.5	0.0	0.033	13.0	0.0	2.4	2	0	0	2	2	2	2	Type	II/IV	secretion	system	protein
Rad51	PF08423.6	gi|257053419|ref|YP_003131252.1|	-	0.00031	19.7	1.0	0.014	14.2	0.1	2.3	2	0	0	2	2	2	1	Rad51
AAA_16	PF13191.1	gi|257053419|ref|YP_003131252.1|	-	0.00062	19.7	0.3	0.9	9.4	0.1	2.6	2	1	0	2	2	2	2	AAA	ATPase	domain
IstB_IS21	PF01695.12	gi|257053419|ref|YP_003131252.1|	-	0.00089	18.7	0.1	0.76	9.1	0.0	2.4	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
Zot	PF05707.7	gi|257053419|ref|YP_003131252.1|	-	0.004	16.6	0.0	3.4	7.0	0.0	2.6	2	1	0	2	2	2	2	Zonular	occludens	toxin	(Zot)
UPF0079	PF02367.12	gi|257053419|ref|YP_003131252.1|	-	0.0041	16.7	2.3	0.17	11.5	0.2	2.3	2	0	0	2	2	2	1	Uncharacterised	P-loop	hydrolase	UPF0079
ABC_tran	PF00005.22	gi|257053419|ref|YP_003131252.1|	-	0.0058	16.9	0.0	0.25	11.6	0.1	2.4	2	0	0	2	2	2	1	ABC	transporter
AAA	PF00004.24	gi|257053419|ref|YP_003131252.1|	-	0.0061	16.7	0.1	0.86	9.8	0.0	3.0	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Zeta_toxin	PF06414.7	gi|257053419|ref|YP_003131252.1|	-	0.0068	15.5	0.2	0.47	9.5	0.0	2.5	2	0	0	2	2	2	1	Zeta	toxin
NACHT	PF05729.7	gi|257053419|ref|YP_003131252.1|	-	0.0087	15.7	0.0	1.9	8.0	0.0	2.4	2	0	0	2	2	2	1	NACHT	domain
FtsK_SpoIIIE	PF01580.13	gi|257053419|ref|YP_003131252.1|	-	0.011	15.2	0.6	1.8	7.9	0.0	3.1	3	0	0	3	3	3	0	FtsK/SpoIIIE	family
AAA_18	PF13238.1	gi|257053419|ref|YP_003131252.1|	-	0.013	15.7	0.0	1.9	8.8	0.0	2.5	2	0	0	2	2	2	0	AAA	domain
DEAD	PF00270.24	gi|257053419|ref|YP_003131252.1|	-	0.018	14.5	0.1	6.4	6.2	0.0	2.5	2	1	0	2	2	2	0	DEAD/DEAH	box	helicase
AAA_29	PF13555.1	gi|257053419|ref|YP_003131252.1|	-	0.022	14.3	3.9	0.3	10.6	1.2	2.4	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
AAA_33	PF13671.1	gi|257053419|ref|YP_003131252.1|	-	0.031	14.1	0.0	3.2	7.6	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
AAA_24	PF13479.1	gi|257053419|ref|YP_003131252.1|	-	0.033	13.7	0.0	7.9	5.9	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
ResIII	PF04851.10	gi|257053419|ref|YP_003131252.1|	-	0.058	13.2	0.0	1.1	9.0	0.0	2.3	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
AAA_30	PF13604.1	gi|257053419|ref|YP_003131252.1|	-	0.064	12.8	0.0	3.6	7.0	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
AAA_10	PF12846.2	gi|257053419|ref|YP_003131252.1|	-	0.071	12.5	0.1	8.4	5.7	0.0	2.6	2	1	0	2	2	2	0	AAA-like	domain
cobW	PF02492.14	gi|257053419|ref|YP_003131252.1|	-	0.084	12.3	0.1	2.2	7.7	0.0	2.4	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_23	PF13476.1	gi|257053419|ref|YP_003131252.1|	-	0.086	13.1	0.4	0.18	12.1	0.3	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_17	PF13207.1	gi|257053419|ref|YP_003131252.1|	-	2.7	8.8	9.3	8.7	7.1	0.3	3.0	2	2	0	2	2	2	0	AAA	domain
DICT	PF10069.4	gi|257053420|ref|YP_003131253.1|	-	2.6e-24	85.1	0.0	4.9e-24	84.2	0.0	1.4	1	0	0	1	1	1	1	Sensory	domain	found	in	DIguanylate	Cyclases	&	Two-component	systems
MCPsignal	PF00015.16	gi|257053421|ref|YP_003131254.1|	-	4e-57	193.1	60.9	8.8e-53	179.0	26.4	2.2	1	1	1	2	2	2	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
PAS_9	PF13426.1	gi|257053421|ref|YP_003131254.1|	-	1.3e-08	35.1	2.1	3.7e-08	33.6	0.2	2.5	2	0	0	2	2	2	1	PAS	domain
DUF948	PF06103.6	gi|257053421|ref|YP_003131254.1|	-	1.3e-07	31.3	27.2	0.0032	17.3	0.5	4.6	2	2	1	4	4	4	2	Bacterial	protein	of	unknown	function	(DUF948)
Muted	PF14942.1	gi|257053421|ref|YP_003131254.1|	-	3e-05	23.9	16.1	0.0057	16.5	0.3	3.5	1	1	2	3	3	3	2	Organelle	biogenesis,	Muted-like	protein
Laminin_II	PF06009.7	gi|257053421|ref|YP_003131254.1|	-	3.9e-05	23.4	37.2	0.045	13.5	2.3	5.0	2	2	3	5	5	5	4	Laminin	Domain	II
Spectrin	PF00435.16	gi|257053421|ref|YP_003131254.1|	-	0.0012	19.0	23.8	0.16	12.2	5.0	4.6	2	2	3	5	5	5	2	Spectrin	repeat
Syntaxin	PF00804.20	gi|257053421|ref|YP_003131254.1|	-	0.0048	17.0	27.3	0.25	11.5	3.1	4.5	2	2	2	4	4	4	3	Syntaxin
Spc7	PF08317.6	gi|257053421|ref|YP_003131254.1|	-	0.0065	15.1	20.2	0.015	13.9	4.6	2.9	1	1	1	2	2	2	1	Spc7	kinetochore	protein
PAS_4	PF08448.5	gi|257053421|ref|YP_003131254.1|	-	0.0077	16.2	0.0	0.0077	16.2	0.0	2.8	3	2	1	4	4	2	1	PAS	fold
APG17	PF04108.7	gi|257053421|ref|YP_003131254.1|	-	0.02	13.7	26.8	0.16	10.6	1.8	4.0	3	1	1	4	4	4	0	Autophagy	protein	Apg17
AAA_27	PF13514.1	gi|257053421|ref|YP_003131254.1|	-	0.025	12.3	35.1	0.032	11.9	24.3	1.1	1	0	0	1	1	1	0	AAA	domain
Reo_sigmaC	PF04582.7	gi|257053421|ref|YP_003131254.1|	-	0.032	13.4	28.5	0.26	10.4	7.2	3.4	1	1	2	3	3	3	0	Reovirus	sigma	C	capsid	protein
Syntaxin-6_N	PF09177.6	gi|257053421|ref|YP_003131254.1|	-	0.055	13.8	27.6	0.42	11.0	1.8	4.5	2	2	2	4	4	4	0	Syntaxin	6,	N-terminal
NPV_P10	PF05531.7	gi|257053421|ref|YP_003131254.1|	-	0.069	13.4	28.5	0.36	11.1	1.9	5.9	2	2	4	6	6	6	0	Nucleopolyhedrovirus	P10	protein
DUF1664	PF07889.7	gi|257053421|ref|YP_003131254.1|	-	0.12	12.1	25.5	0.31	10.8	4.3	4.3	1	1	1	4	4	4	0	Protein	of	unknown	function	(DUF1664)
PAS_10	PF13596.1	gi|257053421|ref|YP_003131254.1|	-	0.14	12.4	2.6	0.61	10.3	0.0	3.2	2	1	2	5	5	4	0	PAS	domain
PAS	PF00989.19	gi|257053421|ref|YP_003131254.1|	-	0.18	11.5	2.8	0.17	11.7	0.2	2.4	2	1	0	2	2	1	0	PAS	fold
Flu_NS2	PF00601.14	gi|257053421|ref|YP_003131254.1|	-	0.2	11.8	5.7	4.6	7.5	0.0	4.1	2	2	3	5	5	5	0	Influenza	non-structural	protein	(NS2)
Myosin_tail_1	PF01576.14	gi|257053421|ref|YP_003131254.1|	-	0.22	9.2	35.6	16	3.0	12.7	1.8	1	1	0	1	1	1	0	Myosin	tail
Lebercilin	PF15619.1	gi|257053421|ref|YP_003131254.1|	-	0.23	10.8	17.6	0.012	15.0	6.0	3.0	2	1	2	4	4	4	0	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
Laminin_I	PF06008.9	gi|257053421|ref|YP_003131254.1|	-	0.32	10.2	34.4	0.11	11.8	4.0	3.7	1	1	1	3	3	3	0	Laminin	Domain	I
BLOC1_2	PF10046.4	gi|257053421|ref|YP_003131254.1|	-	0.47	10.6	27.3	2.7	8.1	1.8	5.1	1	1	5	6	6	6	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Tweety	PF04906.8	gi|257053421|ref|YP_003131254.1|	-	0.49	8.7	18.1	0.49	8.7	0.1	3.7	1	1	3	4	4	4	0	Tweety
TMPIT	PF07851.8	gi|257053421|ref|YP_003131254.1|	-	0.89	8.5	13.9	0.11	11.5	0.3	3.1	2	1	1	3	3	3	0	TMPIT-like	protein
CheZ	PF04344.8	gi|257053421|ref|YP_003131254.1|	-	0.93	9.1	24.4	0.071	12.7	5.6	3.1	1	1	0	2	2	2	0	Chemotaxis	phosphatase,	CheZ
Hemerythrin	PF01814.18	gi|257053421|ref|YP_003131254.1|	-	0.96	9.6	20.2	4.9	7.3	4.8	3.6	1	1	2	3	3	3	0	Hemerythrin	HHE	cation	binding	domain
Mod_r	PF07200.8	gi|257053421|ref|YP_003131254.1|	-	0.97	9.3	16.2	0.87	9.4	3.0	3.7	1	1	3	4	4	4	0	Modifier	of	rudimentary	(Mod(r))	protein
CorA	PF01544.13	gi|257053421|ref|YP_003131254.1|	-	0.99	8.3	14.7	2.9	6.8	2.6	2.5	1	1	1	2	2	2	0	CorA-like	Mg2+	transporter	protein
Allexi_40kDa	PF05549.6	gi|257053421|ref|YP_003131254.1|	-	1.1	8.5	14.8	0.73	9.0	1.0	3.2	1	1	2	3	3	3	0	Allexivirus	40kDa	protein
PhageMin_Tail	PF10145.4	gi|257053421|ref|YP_003131254.1|	-	1.1	8.8	31.9	0.42	10.2	7.9	3.1	1	1	1	2	2	1	0	Phage-related	minor	tail	protein
APG6	PF04111.7	gi|257053421|ref|YP_003131254.1|	-	1.2	8.1	25.1	1.7	7.6	8.3	2.7	2	1	0	2	2	2	0	Autophagy	protein	Apg6
AATF-Che1	PF13339.1	gi|257053421|ref|YP_003131254.1|	-	1.2	9.2	16.3	0.62	10.2	1.5	3.3	2	1	0	2	2	2	0	Apoptosis	antagonizing	transcription	factor
Sec5	PF15469.1	gi|257053421|ref|YP_003131254.1|	-	1.2	8.7	11.8	12	5.5	2.2	3.3	1	1	1	2	2	2	0	Exocyst	complex	component	Sec5
FlaC_arch	PF05377.6	gi|257053421|ref|YP_003131254.1|	-	1.4	8.8	21.3	3.3	7.6	0.2	6.2	4	3	2	6	6	6	0	Flagella	accessory	protein	C	(FlaC)
ISG65-75	PF11727.3	gi|257053421|ref|YP_003131254.1|	-	1.5	7.7	31.6	0.49	9.3	4.6	3.3	2	1	2	4	4	4	0	Invariant	surface	glycoprotein
DegS	PF05384.6	gi|257053421|ref|YP_003131254.1|	-	1.7	7.8	23.4	0.31	10.2	2.7	4.3	3	2	0	3	3	3	0	Sensor	protein	DegS
SpaB_C	PF14028.1	gi|257053421|ref|YP_003131254.1|	-	1.8	8.0	9.0	7.4	6.0	5.9	2.1	1	1	0	1	1	1	0	SpaB	C-terminal	domain
IncA	PF04156.9	gi|257053421|ref|YP_003131254.1|	-	1.9	8.0	23.9	12	5.3	9.2	3.2	1	1	1	2	2	2	0	IncA	protein
THOC7	PF05615.8	gi|257053421|ref|YP_003131254.1|	-	2.4	8.4	15.7	8.4	6.6	0.6	3.5	1	1	2	3	3	3	0	Tho	complex	subunit	7
LOH1CR12	PF10158.4	gi|257053421|ref|YP_003131254.1|	-	3.1	7.5	18.4	1.9	8.2	0.3	4.2	1	1	3	4	4	4	0	Tumour	suppressor	protein
COG5	PF10392.4	gi|257053421|ref|YP_003131254.1|	-	3.5	7.5	14.5	11	6.0	0.1	4.4	3	2	2	5	5	5	0	Golgi	transport	complex	subunit	5
Med9	PF07544.8	gi|257053421|ref|YP_003131254.1|	-	3.7	7.3	17.0	0.37	10.5	0.7	4.5	4	1	1	5	5	4	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
DUF745	PF05335.8	gi|257053421|ref|YP_003131254.1|	-	3.7	7.0	46.9	0.073	12.5	4.6	3.9	2	1	2	4	4	4	0	Protein	of	unknown	function	(DUF745)
ArsR	PF09824.4	gi|257053421|ref|YP_003131254.1|	-	4	6.7	9.0	2.1	7.6	0.4	3.4	2	2	1	3	3	3	0	ArsR	transcriptional	regulator
Atg14	PF10186.4	gi|257053421|ref|YP_003131254.1|	-	4.1	6.2	15.0	0.77	8.6	0.7	2.4	1	1	1	2	2	2	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
FH2	PF02181.18	gi|257053421|ref|YP_003131254.1|	-	4.3	6.1	17.1	2.9	6.6	0.4	3.3	1	1	3	4	4	4	0	Formin	Homology	2	Domain
DUF489	PF04356.7	gi|257053421|ref|YP_003131254.1|	-	4.5	6.8	9.6	3.9	7.0	4.0	2.7	2	2	0	2	2	2	0	Protein	of	unknown	function	(DUF489)
DUF3407	PF11887.3	gi|257053421|ref|YP_003131254.1|	-	5	6.3	17.0	0.23	10.6	4.2	2.9	1	1	1	3	3	3	0	Protein	of	unknown	function	(DUF3407)
Seryl_tRNA_N	PF02403.17	gi|257053421|ref|YP_003131254.1|	-	6.3	6.8	26.2	2.3	8.2	0.5	4.8	2	2	1	4	4	3	0	Seryl-tRNA	synthetase	N-terminal	domain
MutS_III	PF05192.13	gi|257053421|ref|YP_003131254.1|	-	6.9	6.3	13.0	3.9e+02	0.6	9.0	2.6	1	1	0	1	1	1	0	MutS	domain	III
DUF2580	PF10824.3	gi|257053421|ref|YP_003131254.1|	-	8.2	6.8	37.3	5.4	7.4	7.1	4.1	2	2	1	3	3	3	0	Protein	of	unknown	function	(DUF2580)
GHMP_kinases_N	PF00288.21	gi|257053422|ref|YP_003131255.1|	-	1.8e-05	24.7	0.1	3.1e-05	23.9	0.0	1.4	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.8	gi|257053422|ref|YP_003131255.1|	-	0.0014	18.7	0.0	0.003	17.7	0.0	1.5	1	0	0	1	1	1	1	GHMP	kinases	C	terminal
Abhydrolase_3	PF07859.8	gi|257053423|ref|YP_003131256.1|	-	4.6e-25	88.4	2.2	4.6e-25	88.4	1.6	2.1	2	1	0	2	2	2	1	alpha/beta	hydrolase	fold
Peptidase_S9	PF00326.16	gi|257053423|ref|YP_003131256.1|	-	3.4e-16	59.1	0.0	2e-15	56.6	0.0	2.1	1	1	0	1	1	1	1	Prolyl	oligopeptidase	family
Abhydrolase_5	PF12695.2	gi|257053423|ref|YP_003131256.1|	-	3.4e-16	59.2	1.7	5e-16	58.7	1.2	1.2	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
COesterase	PF00135.23	gi|257053423|ref|YP_003131256.1|	-	6.1e-12	45.0	0.0	9.6e-12	44.3	0.0	1.3	1	0	0	1	1	1	1	Carboxylesterase	family
Abhydrolase_4	PF08386.5	gi|257053423|ref|YP_003131256.1|	-	1.1e-07	31.6	0.6	2.3e-07	30.6	0.0	1.8	2	0	0	2	2	2	1	TAP-like	protein
Abhydrolase_6	PF12697.2	gi|257053423|ref|YP_003131256.1|	-	1.3e-06	28.5	8.7	7.8e-06	25.9	6.0	2.0	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
DLH	PF01738.13	gi|257053423|ref|YP_003131256.1|	-	2.7e-06	26.8	0.1	0.002	17.4	0.0	2.9	2	1	0	2	2	2	2	Dienelactone	hydrolase	family
Esterase_phd	PF10503.4	gi|257053423|ref|YP_003131256.1|	-	3.4e-06	26.4	1.9	9.6e-06	25.0	1.1	2.0	2	1	0	2	2	2	1	Esterase	PHB	depolymerase
Abhydrolase_2	PF02230.11	gi|257053423|ref|YP_003131256.1|	-	3.6e-05	23.3	0.0	0.035	13.5	0.0	2.3	2	0	0	2	2	2	2	Phospholipase/Carboxylesterase
FSH1	PF03959.8	gi|257053423|ref|YP_003131256.1|	-	0.00019	20.9	0.0	0.00047	19.6	0.0	1.6	1	1	0	1	1	1	1	Serine	hydrolase	(FSH1)
LIP	PF03583.9	gi|257053423|ref|YP_003131256.1|	-	0.0049	16.1	0.1	0.038	13.1	0.0	2.0	2	0	0	2	2	2	1	Secretory	lipase
Abhydrolase_1	PF00561.15	gi|257053423|ref|YP_003131256.1|	-	0.046	13.2	0.0	0.36	10.3	0.0	2.0	2	0	0	2	2	2	0	alpha/beta	hydrolase	fold
DUF2360	PF10152.4	gi|257053423|ref|YP_003131256.1|	-	1.4	9.2	6.2	2.2	8.5	4.3	1.2	1	0	0	1	1	1	0	Predicted	coiled-coil	domain-containing	protein	(DUF2360)
UvrB	PF12344.3	gi|257053424|ref|YP_003131257.1|	-	5.3e-17	61.0	0.6	1.3e-16	59.8	0.4	1.7	1	0	0	1	1	1	1	Ultra-violet	resistance	protein	B
Helicase_C	PF00271.26	gi|257053424|ref|YP_003131257.1|	-	8.3e-14	51.2	0.0	1.7e-13	50.2	0.0	1.5	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
UVR	PF02151.14	gi|257053424|ref|YP_003131257.1|	-	6.5e-10	38.2	7.5	6.5e-10	38.2	5.2	3.0	2	0	0	2	2	2	1	UvrB/uvrC	motif
ResIII	PF04851.10	gi|257053424|ref|YP_003131257.1|	-	1.6e-08	34.5	0.0	3.1e-07	30.4	0.0	2.3	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.24	gi|257053424|ref|YP_003131257.1|	-	7e-05	22.3	0.0	0.0015	18.0	0.0	2.9	3	0	0	3	3	3	1	DEAD/DEAH	box	helicase
DUF87	PF01935.12	gi|257053424|ref|YP_003131257.1|	-	0.0048	16.7	2.9	0.041	13.6	0.0	3.4	3	1	2	5	5	5	1	Domain	of	unknown	function	DUF87
UB2H	PF14814.1	gi|257053424|ref|YP_003131257.1|	-	0.0091	15.7	0.0	0.026	14.2	0.0	1.8	1	0	0	1	1	1	1	Bifunctional	transglycosylase	second	domain
AAA_5	PF07728.9	gi|257053424|ref|YP_003131257.1|	-	0.031	14.0	0.7	0.38	10.4	0.0	3.0	4	1	0	4	4	4	0	AAA	domain	(dynein-related	subfamily)
Saccharop_dh	PF03435.13	gi|257053425|ref|YP_003131258.1|	-	2.7e-17	62.8	0.2	4.9e-17	61.9	0.1	1.5	1	1	0	1	1	1	1	Saccharopine	dehydrogenase
NAD_binding_10	PF13460.1	gi|257053425|ref|YP_003131258.1|	-	1.4e-09	38.2	0.2	3.1e-09	37.1	0.1	1.5	1	0	0	1	1	1	1	NADH(P)-binding
Rubrerythrin	PF02915.12	gi|257053426|ref|YP_003131259.1|	-	7.2e-08	32.8	1.5	5.7e-05	23.4	0.3	2.3	2	1	0	2	2	2	2	Rubrerythrin
Ferritin	PF00210.19	gi|257053426|ref|YP_003131259.1|	-	0.027	14.2	0.6	0.071	12.8	0.1	1.9	2	1	0	2	2	2	0	Ferritin-like	domain
KaiC	PF06745.8	gi|257053428|ref|YP_003131261.1|	-	3e-10	39.6	0.0	5.2e-05	22.4	0.0	2.1	2	0	0	2	2	2	2	KaiC
AAA_25	PF13481.1	gi|257053428|ref|YP_003131261.1|	-	2.9e-06	26.8	0.3	8e-06	25.3	0.2	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_13	PF13166.1	gi|257053429|ref|YP_003131262.1|	-	3.6e-05	22.4	3.6	4.8e-05	22.0	2.5	1.0	1	0	0	1	1	1	1	AAA	domain
Baculo_PEP_C	PF04513.7	gi|257053429|ref|YP_003131262.1|	-	6.7e-05	22.7	1.9	0.04	13.7	0.3	2.5	2	1	0	2	2	2	2	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Seryl_tRNA_N	PF02403.17	gi|257053429|ref|YP_003131262.1|	-	0.0019	18.1	2.0	0.011	15.7	0.2	2.5	1	1	1	2	2	2	1	Seryl-tRNA	synthetase	N-terminal	domain
RHH_1	PF01402.16	gi|257053429|ref|YP_003131262.1|	-	0.0054	16.5	0.1	0.065	13.1	0.0	2.8	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
NPV_P10	PF05531.7	gi|257053429|ref|YP_003131262.1|	-	0.0076	16.4	8.4	0.032	14.4	0.6	3.4	2	1	0	2	2	2	1	Nucleopolyhedrovirus	P10	protein
Fmp27_WPPW	PF10359.4	gi|257053429|ref|YP_003131262.1|	-	0.0078	14.6	0.9	0.0078	14.6	0.6	1.7	1	1	1	2	2	2	1	RNA	pol	II	promoter	Fmp27	protein	domain
Taxilin	PF09728.4	gi|257053429|ref|YP_003131262.1|	-	0.018	14.1	1.2	0.098	11.7	0.5	1.9	1	1	1	2	2	2	0	Myosin-like	coiled-coil	protein
HSBP1	PF06825.7	gi|257053429|ref|YP_003131262.1|	-	0.023	14.2	0.2	1.2	8.7	0.0	3.2	3	1	0	3	3	2	0	Heat	shock	factor	binding	protein	1
BLOC1_2	PF10046.4	gi|257053429|ref|YP_003131262.1|	-	0.025	14.7	1.7	1.4	9.1	0.0	2.5	1	1	1	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
DUF2408	PF10303.4	gi|257053429|ref|YP_003131262.1|	-	0.025	14.6	0.7	0.061	13.4	0.5	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2408)
TBPIP	PF07106.8	gi|257053429|ref|YP_003131262.1|	-	0.032	13.7	1.6	0.11	12.0	0.3	2.0	1	1	1	2	2	2	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
HypA	PF01155.14	gi|257053429|ref|YP_003131262.1|	-	0.038	13.6	1.0	0.091	12.4	0.6	1.7	1	1	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
Nup54	PF13874.1	gi|257053429|ref|YP_003131262.1|	-	0.047	13.3	1.3	1.3	8.6	0.1	2.7	1	1	1	2	2	2	0	Nucleoporin	complex	subunit	54
FlaC_arch	PF05377.6	gi|257053429|ref|YP_003131262.1|	-	0.052	13.4	2.7	4.5	7.2	0.0	3.5	4	0	0	4	4	3	0	Flagella	accessory	protein	C	(FlaC)
Allexi_40kDa	PF05549.6	gi|257053429|ref|YP_003131262.1|	-	0.06	12.6	0.8	0.18	11.0	0.2	1.9	1	1	1	2	2	2	0	Allexivirus	40kDa	protein
DZR	PF12773.2	gi|257053429|ref|YP_003131262.1|	-	0.1	12.4	0.4	0.2	11.5	0.3	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
DUF1664	PF07889.7	gi|257053429|ref|YP_003131262.1|	-	0.17	11.7	6.7	0.8	9.5	0.5	2.4	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1664)
IncA	PF04156.9	gi|257053429|ref|YP_003131262.1|	-	0.17	11.4	10.1	0.29	10.7	2.8	2.4	1	1	1	2	2	2	0	IncA	protein
Tweety	PF04906.8	gi|257053429|ref|YP_003131262.1|	-	0.19	10.1	0.0	0.31	9.4	0.0	1.3	1	1	0	1	1	1	0	Tweety
Spc7	PF08317.6	gi|257053429|ref|YP_003131262.1|	-	0.21	10.2	4.8	0.098	11.3	0.8	1.8	1	1	1	2	2	2	0	Spc7	kinetochore	protein
FANCI_S4	PF14678.1	gi|257053429|ref|YP_003131262.1|	-	0.22	10.6	1.3	1.5	7.8	0.1	2.4	2	1	0	3	3	3	0	FANCI	solenoid	4
ING	PF12998.2	gi|257053429|ref|YP_003131262.1|	-	0.27	11.5	2.5	1.2	9.4	0.1	2.6	3	0	0	3	3	2	0	Inhibitor	of	growth	proteins	N-terminal	histone-binding
zf-ribbon_3	PF13248.1	gi|257053429|ref|YP_003131262.1|	-	0.28	10.4	1.8	17	4.7	0.1	2.5	2	0	0	2	2	2	0	zinc-ribbon	domain
Reo_sigmaC	PF04582.7	gi|257053429|ref|YP_003131262.1|	-	0.39	9.8	3.6	0.86	8.7	2.5	1.5	1	1	0	1	1	1	0	Reovirus	sigma	C	capsid	protein
MtrG	PF04210.8	gi|257053429|ref|YP_003131262.1|	-	0.43	10.2	7.9	4.3	7.0	0.1	3.3	2	1	1	3	3	3	0	Tetrahydromethanopterin	S-methyltransferase,	subunit	G
Nudix_N_2	PF14803.1	gi|257053429|ref|YP_003131262.1|	-	0.55	9.9	4.7	4.7	6.9	2.8	2.5	1	1	1	2	2	2	0	Nudix	N-terminal
Lar_restr_allev	PF14354.1	gi|257053429|ref|YP_003131262.1|	-	0.55	10.5	2.9	6.4	7.1	0.1	2.6	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
Apolipoprotein	PF01442.13	gi|257053429|ref|YP_003131262.1|	-	0.62	9.5	12.5	0.26	10.7	5.3	2.3	1	1	1	2	2	2	0	Apolipoprotein	A1/A4/E	domain
DUF848	PF05852.6	gi|257053429|ref|YP_003131262.1|	-	1.8	8.4	9.6	0.91	9.3	0.6	2.6	1	1	1	2	2	2	0	Gammaherpesvirus	protein	of	unknown	function	(DUF848)
COG2	PF06148.6	gi|257053429|ref|YP_003131262.1|	-	2.7	7.8	8.3	2.1	8.2	0.8	2.8	1	1	1	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
DUF605	PF04652.11	gi|257053430|ref|YP_003131263.1|	-	9.7	5.4	12.6	12	5.1	8.7	1.2	1	0	0	1	1	1	0	Vta1	like
TFIIS_C	PF01096.13	gi|257053431|ref|YP_003131264.1|	-	4.8e-17	61.3	1.6	4.8e-17	61.3	1.1	3.1	3	0	0	3	3	3	1	Transcription	factor	S-II	(TFIIS)
DZR	PF12773.2	gi|257053431|ref|YP_003131264.1|	-	1.2e-08	34.6	6.2	4.4e-05	23.2	0.9	2.3	2	0	0	2	2	2	2	Double	zinc	ribbon
RNA_POL_M_15KD	PF02150.11	gi|257053431|ref|YP_003131264.1|	-	2.7e-07	30.1	3.1	2.7e-07	30.1	2.1	3.0	3	0	0	3	3	3	1	RNA	polymerases	M/15	Kd	subunit
DNA_RNApol_7kD	PF03604.8	gi|257053431|ref|YP_003131264.1|	-	1.9e-05	24.0	12.3	0.17	11.3	0.3	3.5	3	1	0	3	3	3	3	DNA	directed	RNA	polymerase,	7	kDa	subunit
Zn_Tnp_IS1595	PF12760.2	gi|257053431|ref|YP_003131264.1|	-	2.1e-05	24.2	9.2	0.00014	21.5	0.5	3.1	2	1	1	3	3	3	1	Transposase	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.6	gi|257053431|ref|YP_003131264.1|	-	0.00012	21.6	11.3	0.0069	16.0	1.1	2.9	2	1	0	2	2	2	2	Putative	transposase	DNA-binding	domain
zf-ribbon_3	PF13248.1	gi|257053431|ref|YP_003131264.1|	-	0.0025	16.9	16.2	0.0053	15.9	1.1	3.8	4	1	0	4	4	4	2	zinc-ribbon	domain
UPF0547	PF10571.4	gi|257053431|ref|YP_003131264.1|	-	0.0051	16.4	15.0	0.083	12.6	2.4	3.8	3	1	0	3	3	3	1	Uncharacterised	protein	family	UPF0547
PhnA_Zn_Ribbon	PF08274.7	gi|257053431|ref|YP_003131264.1|	-	0.014	15.2	14.2	2.5	7.9	3.1	3.8	3	1	0	3	3	3	0	PhnA	Zinc-Ribbon
HypA	PF01155.14	gi|257053431|ref|YP_003131264.1|	-	0.015	15.0	8.5	0.5	10.0	1.7	2.4	1	1	0	2	2	2	0	Hydrogenase	expression/synthesis	hypA	family
Prok-RING_1	PF14446.1	gi|257053431|ref|YP_003131264.1|	-	0.023	14.4	10.5	0.32	10.7	0.7	3.2	3	0	0	3	3	3	0	Prokaryotic	RING	finger	family	1
Zn-ribbon_8	PF09723.5	gi|257053431|ref|YP_003131264.1|	-	0.031	14.2	12.1	3.4	7.6	0.1	3.9	3	1	0	3	3	3	0	Zinc	ribbon	domain
Lac_bphage_repr	PF06543.7	gi|257053431|ref|YP_003131264.1|	-	0.035	13.6	0.9	0.049	13.1	0.7	1.2	1	0	0	1	1	1	0	Lactococcus	bacteriophage	repressor
Nudix_N_2	PF14803.1	gi|257053431|ref|YP_003131264.1|	-	0.038	13.6	14.3	12	5.6	0.1	4.1	3	1	0	3	3	3	0	Nudix	N-terminal
DUF2318	PF10080.4	gi|257053431|ref|YP_003131264.1|	-	0.038	13.7	9.0	0.42	10.4	1.4	2.9	2	1	1	3	3	3	0	Predicted	membrane	protein	(DUF2318)
zf-piccolo	PF05715.8	gi|257053431|ref|YP_003131264.1|	-	0.043	13.8	6.0	0.13	12.2	0.0	3.1	2	2	1	3	3	3	0	Piccolo	Zn-finger
Ribosomal_L37e	PF01907.14	gi|257053431|ref|YP_003131264.1|	-	0.062	13.1	5.3	0.59	9.9	0.4	3.0	3	0	0	3	3	3	0	Ribosomal	protein	L37e
PHD	PF00628.24	gi|257053431|ref|YP_003131264.1|	-	0.074	12.7	11.4	0.27	10.9	0.3	2.7	2	1	0	2	2	2	0	PHD-finger
TF_Zn_Ribbon	PF08271.7	gi|257053431|ref|YP_003131264.1|	-	0.077	12.3	17.2	3.7	6.9	2.7	4.3	3	2	0	3	3	3	0	TFIIB	zinc-binding
DUF2039	PF10217.4	gi|257053431|ref|YP_003131264.1|	-	0.11	12.5	2.5	1.5	8.8	0.0	2.2	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2039)
GATA	PF00320.22	gi|257053431|ref|YP_003131264.1|	-	0.26	10.6	10.1	2.6	7.4	0.8	3.7	3	1	0	3	3	3	0	GATA	zinc	finger
ADK_lid	PF05191.9	gi|257053431|ref|YP_003131264.1|	-	0.27	10.9	12.7	0.59	9.8	0.2	4.0	3	1	0	3	3	3	0	Adenylate	kinase,	active	site	lid
zinc_ribbon_2	PF13240.1	gi|257053431|ref|YP_003131264.1|	-	0.3	10.6	17.6	4.6	6.8	0.1	4.1	3	1	0	3	3	3	0	zinc-ribbon	domain
GFA	PF04828.9	gi|257053431|ref|YP_003131264.1|	-	0.36	10.7	11.3	3.6	7.5	0.4	3.7	1	1	2	3	3	3	0	Glutathione-dependent	formaldehyde-activating	enzyme
Zn_ribbon_recom	PF13408.1	gi|257053431|ref|YP_003131264.1|	-	0.52	10.6	10.7	13	6.1	0.1	3.7	3	1	0	3	3	3	0	Recombinase	zinc	beta	ribbon	domain
zf-CCHC_4	PF14392.1	gi|257053431|ref|YP_003131264.1|	-	0.53	10.0	0.2	0.53	10.0	0.1	3.0	4	0	0	4	4	3	0	Zinc	knuckle
zf-C3HC4_3	PF13920.1	gi|257053431|ref|YP_003131264.1|	-	0.69	9.6	7.3	12	5.6	1.5	3.2	3	1	0	3	3	3	0	Zinc	finger,	C3HC4	type	(RING	finger)
C1_1	PF00130.17	gi|257053431|ref|YP_003131264.1|	-	0.75	9.5	9.6	2.2	8.0	1.8	2.7	2	1	0	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
zf-IS66	PF13005.2	gi|257053431|ref|YP_003131264.1|	-	0.76	9.7	14.6	0.18	11.7	1.4	3.4	2	1	0	3	3	3	0	zinc-finger	binding	domain	of	transposase	IS66
Mcm10	PF09332.6	gi|257053431|ref|YP_003131264.1|	-	1.1	8.5	3.7	0.28	10.4	0.3	1.7	2	0	0	2	2	2	0	Mcm10	replication	factor
zinc_ribbon_5	PF13719.1	gi|257053431|ref|YP_003131264.1|	-	1.1	8.9	11.1	0.41	10.2	0.4	3.7	3	1	1	4	4	4	0	zinc-ribbon	domain
zf-NADH-PPase	PF09297.6	gi|257053431|ref|YP_003131264.1|	-	1.1	8.7	15.6	3.3	7.3	3.6	3.9	3	1	0	3	3	3	0	NADH	pyrophosphatase	zinc	ribbon	domain
Lar_restr_allev	PF14354.1	gi|257053431|ref|YP_003131264.1|	-	1.2	9.5	13.3	4.6	7.6	1.8	3.1	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
zinc-ribbons_6	PF07191.7	gi|257053431|ref|YP_003131264.1|	-	1.3	8.8	8.4	0.48	10.2	0.7	2.6	2	1	0	2	2	2	0	zinc-ribbons
Sgf11	PF08209.6	gi|257053431|ref|YP_003131264.1|	-	1.7	8.0	7.7	18	4.7	0.0	3.7	4	0	0	4	4	4	0	Sgf11	(transcriptional	regulation	protein)
FYVE	PF01363.16	gi|257053431|ref|YP_003131264.1|	-	1.8	8.5	7.2	17	5.4	5.0	2.3	1	1	0	1	1	1	0	FYVE	zinc	finger
Cytochrom_CIII	PF02085.11	gi|257053431|ref|YP_003131264.1|	-	2	8.5	7.5	11	6.1	0.5	2.8	1	1	1	2	2	2	0	Class	III	cytochrome	C	family
zinc_ribbon_4	PF13717.1	gi|257053431|ref|YP_003131264.1|	-	2.1	8.0	11.8	0.54	10.0	0.5	3.7	3	1	1	4	4	4	0	zinc-ribbon	domain
zf-trcl	PF13451.1	gi|257053431|ref|YP_003131264.1|	-	2.5	7.8	11.4	28	4.4	0.1	4.0	4	0	0	4	4	4	0	Probable	zinc-binding	domain
DUF4428	PF14471.1	gi|257053431|ref|YP_003131264.1|	-	3.4	7.5	7.9	5.2	6.8	0.0	2.8	3	0	0	3	3	2	0	Domain	of	unknown	function	(DUF4428)
IBR	PF01485.16	gi|257053431|ref|YP_003131264.1|	-	4.5	7.2	12.8	18	5.3	1.1	3.4	2	2	0	2	2	2	0	IBR	domain
zf-RING_5	PF14634.1	gi|257053431|ref|YP_003131264.1|	-	5	6.9	12.2	1.5	8.6	1.1	3.1	2	1	0	2	2	2	0	zinc-RING	finger	domain
Trm112p	PF03966.11	gi|257053431|ref|YP_003131264.1|	-	7.4	7.0	5.9	42	4.5	0.5	3.1	2	1	1	3	3	3	0	Trm112p-like	protein
zf-ZPR1	PF03367.8	gi|257053431|ref|YP_003131264.1|	-	8.2	5.5	6.8	11	5.1	0.0	3.1	2	1	1	3	3	3	0	ZPR1	zinc-finger	domain
zf-UBR	PF02207.15	gi|257053431|ref|YP_003131264.1|	-	8.8	6.1	11.0	3.3	7.4	0.5	2.9	2	1	1	3	3	3	0	Putative	zinc	finger	in	N-recognin	(UBR	box)
DUF2191	PF09957.4	gi|257053433|ref|YP_003131266.1|	-	2.1e-06	27.4	2.1	1.8e-05	24.4	0.4	2.8	2	1	0	2	2	2	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2191)
RHH_1	PF01402.16	gi|257053433|ref|YP_003131266.1|	-	4.3e-06	26.3	1.4	8.6e-06	25.4	0.2	2.1	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
DUF1160	PF06648.6	gi|257053433|ref|YP_003131266.1|	-	0.0036	17.0	0.0	0.0043	16.8	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1160)
DUF1778	PF08681.6	gi|257053433|ref|YP_003131266.1|	-	0.041	13.6	0.2	0.066	13.0	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1778)
PSK_trans_fac	PF07704.6	gi|257053433|ref|YP_003131266.1|	-	0.16	12.6	2.4	0.46	11.1	1.6	1.9	1	1	0	1	1	1	0	Rv0623-like	transcription	factor
RHH_3	PF12651.2	gi|257053433|ref|YP_003131266.1|	-	0.26	11.0	1.4	0.34	10.6	0.1	1.9	2	0	0	2	2	2	0	Ribbon-helix-helix	domain
ABC2_membrane_4	PF12730.2	gi|257053434|ref|YP_003131267.1|	-	0.12	11.4	17.6	0.49	9.5	12.2	2.0	1	1	0	1	1	1	0	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.2	gi|257053434|ref|YP_003131267.1|	-	9.8	5.0	14.4	14	4.5	9.6	1.6	1	1	0	1	1	1	0	ABC-2	family	transporter	protein
ABC_tran	PF00005.22	gi|257053435|ref|YP_003131268.1|	-	2.2e-26	92.7	0.0	3.4e-26	92.1	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|257053435|ref|YP_003131268.1|	-	7.3e-17	62.2	0.0	3.3e-11	43.7	0.0	2.1	1	1	1	2	2	2	2	AAA	domain
AAA_22	PF13401.1	gi|257053435|ref|YP_003131268.1|	-	0.00071	19.7	0.0	0.0012	19.0	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_23	PF13476.1	gi|257053435|ref|YP_003131268.1|	-	0.0027	18.0	0.0	0.0034	17.7	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|257053435|ref|YP_003131268.1|	-	0.0064	16.4	0.0	0.013	15.4	0.0	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_30	PF13604.1	gi|257053435|ref|YP_003131268.1|	-	0.0066	16.0	0.0	0.025	14.1	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_10	PF12846.2	gi|257053435|ref|YP_003131268.1|	-	0.018	14.4	0.0	1.1	8.5	0.0	2.1	1	1	1	2	2	2	0	AAA-like	domain
KdpD	PF02702.12	gi|257053435|ref|YP_003131268.1|	-	0.019	14.1	0.0	0.026	13.6	0.0	1.2	1	0	0	1	1	1	0	Osmosensitive	K+	channel	His	kinase	sensor	domain
SbcCD_C	PF13558.1	gi|257053435|ref|YP_003131268.1|	-	0.048	13.5	0.0	0.093	12.6	0.0	1.6	1	0	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_29	PF13555.1	gi|257053435|ref|YP_003131268.1|	-	0.061	12.8	0.2	0.12	11.9	0.1	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
MobB	PF03205.9	gi|257053435|ref|YP_003131268.1|	-	0.095	12.3	0.1	0.29	10.8	0.0	1.7	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Mg_chelatase	PF01078.16	gi|257053435|ref|YP_003131268.1|	-	0.11	11.6	0.0	0.18	10.9	0.0	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
Zeta_toxin	PF06414.7	gi|257053435|ref|YP_003131268.1|	-	0.12	11.5	0.0	0.28	10.2	0.0	1.6	2	0	0	2	2	2	0	Zeta	toxin
T2SE	PF00437.15	gi|257053435|ref|YP_003131268.1|	-	0.12	11.2	0.0	0.36	9.6	0.0	1.8	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
SRP54	PF00448.17	gi|257053435|ref|YP_003131268.1|	-	0.14	11.5	0.0	0.25	10.7	0.0	1.3	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
HTH_3	PF01381.17	gi|257053436|ref|YP_003131269.1|	-	2.7e-17	62.3	0.0	3.1e-17	62.1	0.0	1.0	1	0	0	1	1	1	1	Helix-turn-helix
HTH_19	PF12844.2	gi|257053436|ref|YP_003131269.1|	-	4.4e-12	45.8	0.0	4.8e-12	45.7	0.0	1.0	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_31	PF13560.1	gi|257053436|ref|YP_003131269.1|	-	5.9e-11	42.4	0.1	7.1e-11	42.1	0.1	1.0	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|257053436|ref|YP_003131269.1|	-	9.3e-05	21.7	0.0	0.00015	21.0	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.1	gi|257053436|ref|YP_003131269.1|	-	0.00034	20.0	0.1	0.00057	19.3	0.0	1.5	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_Crp_2	PF13545.1	gi|257053436|ref|YP_003131269.1|	-	0.0043	16.8	0.0	0.0067	16.1	0.0	1.3	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_38	PF13936.1	gi|257053436|ref|YP_003131269.1|	-	0.0057	16.1	0.1	0.019	14.4	0.0	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_11	PF08279.7	gi|257053436|ref|YP_003131269.1|	-	0.0064	16.1	0.2	0.0096	15.5	0.1	1.2	1	0	0	1	1	1	1	HTH	domain
HTH_23	PF13384.1	gi|257053436|ref|YP_003131269.1|	-	0.0079	15.8	0.0	0.018	14.6	0.0	1.6	2	0	0	2	2	2	1	Homeodomain-like	domain
Sigma70_r4	PF04545.11	gi|257053436|ref|YP_003131269.1|	-	0.008	15.4	0.1	0.012	14.8	0.1	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_37	PF13744.1	gi|257053436|ref|YP_003131269.1|	-	0.011	15.5	0.1	0.019	14.7	0.0	1.3	1	1	0	1	1	1	0	Helix-turn-helix	domain
HTH_25	PF13413.1	gi|257053436|ref|YP_003131269.1|	-	0.017	14.7	0.2	0.02	14.4	0.1	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_26	PF13443.1	gi|257053436|ref|YP_003131269.1|	-	0.023	14.8	0.0	0.027	14.6	0.0	1.1	1	0	0	1	1	1	0	Cro/C1-type	HTH	DNA-binding	domain
MerR	PF00376.18	gi|257053436|ref|YP_003131269.1|	-	0.037	13.5	0.0	0.061	12.9	0.0	1.4	1	0	0	1	1	1	0	MerR	family	regulatory	protein
MarR_2	PF12802.2	gi|257053436|ref|YP_003131269.1|	-	0.049	13.3	0.0	0.076	12.6	0.0	1.3	1	0	0	1	1	1	0	MarR	family
HTH_28	PF13518.1	gi|257053436|ref|YP_003131269.1|	-	0.069	13.1	0.1	0.14	12.1	0.0	1.6	1	1	1	2	2	2	0	Helix-turn-helix	domain
HTH_7	PF02796.10	gi|257053436|ref|YP_003131269.1|	-	0.083	12.7	0.2	0.23	11.3	0.1	1.7	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	resolvase
DUF1206	PF06724.6	gi|257053437|ref|YP_003131270.1|	-	0.025	14.3	2.9	0.025	14.3	2.0	2.6	3	0	0	3	3	3	0	Domain	of	Unknown	Function	(DUF1206)
DUF378	PF04070.7	gi|257053437|ref|YP_003131270.1|	-	5.6	6.6	9.3	8.8	6.0	0.2	3.1	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF378)
Zip	PF02535.17	gi|257053438|ref|YP_003131271.1|	-	0.0065	15.5	14.6	0.15	11.0	5.1	2.7	1	1	0	2	2	2	2	ZIP	Zinc	transporter
DUF204	PF02659.10	gi|257053438|ref|YP_003131271.1|	-	0.08	13.0	0.4	0.08	13.0	0.3	3.7	3	1	0	3	3	3	0	Domain	of	unknown	function	DUF
MtrF	PF09472.5	gi|257053438|ref|YP_003131271.1|	-	0.36	10.1	0.1	0.36	10.1	0.0	3.4	4	0	0	4	4	4	0	Tetrahydromethanopterin	S-methyltransferase,	F	subunit	(MtrF)
Amino_oxidase	PF01593.19	gi|257053439|ref|YP_003131272.1|	-	1.2e-23	83.9	0.3	1.9e-22	79.9	0.2	2.3	1	1	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.1	gi|257053439|ref|YP_003131272.1|	-	2.3e-16	59.5	0.1	6.4e-16	58.1	0.1	1.8	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.19	gi|257053439|ref|YP_003131272.1|	-	3.5e-16	59.0	0.4	1.7e-08	33.7	0.0	2.8	2	1	0	2	2	2	2	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.1	gi|257053439|ref|YP_003131272.1|	-	5.6e-10	39.6	1.7	0.00011	22.3	0.4	3.1	1	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|257053439|ref|YP_003131272.1|	-	9.3e-08	32.3	5.0	0.0001	22.6	0.6	2.9	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.19	gi|257053439|ref|YP_003131272.1|	-	2.6e-07	29.8	2.4	6.4e-07	28.5	1.5	1.7	2	0	0	2	2	2	1	FAD	binding	domain
FAD_binding_3	PF01494.14	gi|257053439|ref|YP_003131272.1|	-	2.7e-07	29.9	0.7	1e-06	28.1	0.1	2.0	2	0	0	2	2	2	1	FAD	binding	domain
HI0933_like	PF03486.9	gi|257053439|ref|YP_003131272.1|	-	3.5e-07	29.0	1.7	0.0015	17.0	0.6	2.3	2	0	0	2	2	2	2	HI0933-like	protein
Pyr_redox_2	PF07992.9	gi|257053439|ref|YP_003131272.1|	-	5.1e-07	29.7	0.0	1e-05	25.5	0.0	2.6	2	1	1	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.2	gi|257053439|ref|YP_003131272.1|	-	6.9e-07	28.6	0.0	1.3e-06	27.7	0.0	1.5	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Thi4	PF01946.12	gi|257053439|ref|YP_003131272.1|	-	7.6e-06	25.1	0.7	1.3e-05	24.3	0.1	1.6	2	0	0	2	2	2	1	Thi4	family
NAD_binding_9	PF13454.1	gi|257053439|ref|YP_003131272.1|	-	0.00015	21.5	6.3	0.0076	16.0	0.1	3.1	3	0	0	3	3	3	2	FAD-NAD(P)-binding
GIDA	PF01134.17	gi|257053439|ref|YP_003131272.1|	-	0.0031	16.4	2.0	0.0053	15.6	1.4	1.3	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
NAD_binding_7	PF13241.1	gi|257053439|ref|YP_003131272.1|	-	0.0079	16.4	0.0	0.016	15.4	0.0	1.7	1	0	0	1	1	1	1	Putative	NAD(P)-binding
Strep_67kDa_ant	PF06100.6	gi|257053439|ref|YP_003131272.1|	-	0.012	14.0	0.0	0.019	13.3	0.0	1.3	1	0	0	1	1	1	0	Streptococcal	67	kDa	myosin-cross-reactive	antigen	like	family
3HCDH_N	PF02737.13	gi|257053439|ref|YP_003131272.1|	-	0.02	14.5	0.6	0.036	13.7	0.4	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Trp_halogenase	PF04820.9	gi|257053439|ref|YP_003131272.1|	-	0.032	12.8	0.9	0.066	11.8	0.6	1.5	1	0	0	1	1	1	0	Tryptophan	halogenase
UDPG_MGDP_dh_N	PF03721.9	gi|257053439|ref|YP_003131272.1|	-	0.036	13.4	0.9	0.061	12.6	0.6	1.3	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
AlaDh_PNT_C	PF01262.16	gi|257053439|ref|YP_003131272.1|	-	0.069	12.7	0.6	0.6	9.6	0.1	2.5	3	0	0	3	3	3	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Lycopene_cycl	PF05834.7	gi|257053439|ref|YP_003131272.1|	-	0.2	10.5	0.8	0.31	9.9	0.5	1.2	1	0	0	1	1	1	0	Lycopene	cyclase	protein
UbiA	PF01040.13	gi|257053440|ref|YP_003131273.1|	-	8.3e-27	94.0	22.4	1.1e-26	93.6	15.5	1.1	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
DUF422	PF04240.7	gi|257053441|ref|YP_003131274.1|	-	1.3e-63	214.3	18.4	7e-63	211.8	12.8	1.9	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF422)
RHH_1	PF01402.16	gi|257053442|ref|YP_003131275.1|	-	0.0082	16.0	0.1	0.017	15.0	0.1	1.5	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
PIN	PF01850.16	gi|257053443|ref|YP_003131276.1|	-	0.061	13.6	0.1	0.089	13.1	0.1	1.2	1	0	0	1	1	1	0	PIN	domain
DUF1090	PF06476.7	gi|257053444|ref|YP_003131277.1|	-	0.012	15.2	0.3	0.016	14.8	0.2	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1090)
Cortex-I_coil	PF09304.5	gi|257053444|ref|YP_003131277.1|	-	0.012	15.6	0.5	0.014	15.4	0.3	1.1	1	0	0	1	1	1	0	Cortexillin	I,	coiled	coil
Hpt	PF01627.18	gi|257053444|ref|YP_003131277.1|	-	0.03	14.3	1.6	0.059	13.3	1.1	1.6	1	1	0	1	1	1	0	Hpt	domain
Spc7	PF08317.6	gi|257053444|ref|YP_003131277.1|	-	0.04	12.5	0.0	0.045	12.4	0.0	1.0	1	0	0	1	1	1	0	Spc7	kinetochore	protein
DUF3166	PF11365.3	gi|257053444|ref|YP_003131277.1|	-	0.049	14.0	0.1	0.088	13.2	0.1	1.5	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3166)
ASD2	PF08687.6	gi|257053444|ref|YP_003131277.1|	-	0.053	12.8	0.1	0.09	12.0	0.1	1.3	1	0	0	1	1	1	0	Apx/Shroom	domain	ASD2
DUF2884	PF11101.3	gi|257053444|ref|YP_003131277.1|	-	0.095	12.0	0.5	0.11	11.9	0.4	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2884)
DUF1409	PF07197.7	gi|257053444|ref|YP_003131277.1|	-	0.1	12.6	0.6	0.23	11.5	0.1	1.8	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1409)
HrpB7	PF09486.5	gi|257053444|ref|YP_003131277.1|	-	0.17	11.7	6.5	4.6	7.1	4.5	2.0	1	1	0	1	1	1	0	Bacterial	type	III	secretion	protein	(HrpB7)
Flagellin_N	PF00669.15	gi|257053444|ref|YP_003131277.1|	-	0.24	11.1	3.9	0.44	10.3	2.7	1.5	1	1	0	1	1	1	0	Bacterial	flagellin	N-terminal	helical	region
NPV_P10	PF05531.7	gi|257053444|ref|YP_003131277.1|	-	0.29	11.3	2.4	3.9	7.7	1.6	2.1	1	1	0	1	1	1	0	Nucleopolyhedrovirus	P10	protein
FUSC	PF04632.7	gi|257053444|ref|YP_003131277.1|	-	0.35	9.2	3.5	0.37	9.1	2.4	1.0	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
DUF4404	PF14357.1	gi|257053444|ref|YP_003131277.1|	-	0.36	11.2	4.8	2.4	8.6	0.4	2.1	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4404)
WXG100	PF06013.7	gi|257053444|ref|YP_003131277.1|	-	0.65	10.0	4.9	19	5.3	0.4	2.9	2	1	1	3	3	3	0	Proteins	of	100	residues	with	WXG
DUF3646	PF12362.3	gi|257053445|ref|YP_003131278.1|	-	0.03	14.2	0.0	0.042	13.8	0.0	1.2	1	0	0	1	1	1	0	DNA	polymerase	III	gamma	and	tau	subunits	C	terminal
DUF159	PF02586.9	gi|257053446|ref|YP_003131279.1|	-	2.3e-60	203.6	0.0	2.6e-60	203.5	0.0	1.0	1	0	0	1	1	1	1	Uncharacterised	ACR,	COG2135
HAD	PF12710.2	gi|257053447|ref|YP_003131280.1|	-	2.1e-15	57.4	0.1	3.1e-15	56.8	0.0	1.3	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.21	gi|257053447|ref|YP_003131280.1|	-	2.1e-10	41.3	0.4	3e-10	40.8	0.3	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.7	gi|257053447|ref|YP_003131280.1|	-	0.036	13.6	0.1	0.2	11.1	0.0	2.1	3	0	0	3	3	3	0	haloacid	dehalogenase-like	hydrolase
FR47	PF08445.5	gi|257053447|ref|YP_003131280.1|	-	0.061	13.0	0.1	0.13	12.0	0.1	1.5	1	0	0	1	1	1	0	FR47-like	protein
MCPsignal	PF00015.16	gi|257053448|ref|YP_003131281.1|	-	1.2e-46	158.9	72.8	3.7e-45	154.1	27.0	4.5	2	1	2	4	4	4	3	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
HAMP	PF00672.20	gi|257053448|ref|YP_003131281.1|	-	7.8e-11	41.9	31.9	2e-08	34.3	0.3	7.6	7	1	1	8	8	8	3	HAMP	domain
Spc7	PF08317.6	gi|257053448|ref|YP_003131281.1|	-	0.0095	14.6	34.9	0.27	9.8	3.6	3.8	1	1	1	3	3	3	3	Spc7	kinetochore	protein
Baculo_11_kDa	PF06143.6	gi|257053448|ref|YP_003131281.1|	-	0.018	14.4	0.0	0.052	12.9	0.0	1.8	1	0	0	1	1	1	0	Baculovirus	11	kDa	family
IL10	PF00726.12	gi|257053448|ref|YP_003131281.1|	-	0.084	12.1	0.4	0.49	9.6	0.0	2.4	2	1	1	3	3	3	0	Interleukin	10
DUF948	PF06103.6	gi|257053448|ref|YP_003131281.1|	-	0.7	9.7	43.7	0.34	10.7	0.4	7.7	3	2	3	7	7	7	0	Bacterial	protein	of	unknown	function	(DUF948)
NPV_P10	PF05531.7	gi|257053448|ref|YP_003131281.1|	-	7.2	6.9	36.6	0.21	11.8	1.6	6.9	3	2	4	7	7	7	0	Nucleopolyhedrovirus	P10	protein
Hormone_1	PF00103.15	gi|257053448|ref|YP_003131281.1|	-	9.4	5.5	9.6	3.1	7.0	0.6	3.9	2	2	0	4	4	4	0	Somatotropin	hormone	family
Ribosom_S12_S23	PF00164.20	gi|257053449|ref|YP_003131282.1|	-	8.8e-41	138.1	0.2	1e-40	137.9	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S12/S23
Ribosomal_S7	PF00177.16	gi|257053450|ref|YP_003131283.1|	-	2.3e-37	127.8	4.3	2.7e-37	127.6	3.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S7p/S5e
Ribosomal_L15e	PF00827.12	gi|257053451|ref|YP_003131284.1|	-	2.5e-84	281.5	7.3	3e-84	281.3	5.1	1.0	1	0	0	1	1	1	1	Ribosomal	L15
Regulator_TrmB	PF11495.3	gi|257053452|ref|YP_003131285.1|	-	7.7e-43	146.1	0.0	9.5e-43	145.8	0.0	1.1	1	0	0	1	1	1	1	Archaeal	transcriptional	regulator	TrmB
TrmB	PF01978.14	gi|257053452|ref|YP_003131285.1|	-	1.3e-13	50.3	0.0	2.3e-13	49.6	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|257053452|ref|YP_003131285.1|	-	0.0055	16.3	0.0	0.012	15.2	0.0	1.7	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.5	gi|257053452|ref|YP_003131285.1|	-	0.078	12.5	0.0	0.19	11.3	0.0	1.7	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
PadR	PF03551.9	gi|257053452|ref|YP_003131285.1|	-	0.082	12.6	0.0	0.18	11.5	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
Cellulase	PF00150.13	gi|257053453|ref|YP_003131286.1|	-	2.1e-32	112.4	2.0	3e-32	111.9	1.4	1.2	1	0	0	1	1	1	1	Cellulase	(glycosyl	hydrolase	family	5)
fn3	PF00041.16	gi|257053453|ref|YP_003131286.1|	-	4.3e-16	58.8	1.2	9.3e-16	57.7	0.9	1.6	1	0	0	1	1	1	1	Fibronectin	type	III	domain
TAT_signal	PF10518.4	gi|257053453|ref|YP_003131286.1|	-	0.038	13.9	5.2	0.12	12.3	3.6	2.0	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
SusE	PF14292.1	gi|257053453|ref|YP_003131286.1|	-	1.1	9.1	5.8	0.27	11.0	1.0	2.3	3	0	0	3	3	3	0	SusE	outer	membrane	protein
fn3	PF00041.16	gi|257053454|ref|YP_003131287.1|	-	1e-28	99.2	13.2	1.3e-15	57.2	1.2	3.3	3	0	0	3	3	3	2	Fibronectin	type	III	domain
Cellulase	PF00150.13	gi|257053454|ref|YP_003131287.1|	-	1.3e-19	70.4	8.1	3.5e-19	69.0	5.6	1.8	1	1	0	1	1	1	1	Cellulase	(glycosyl	hydrolase	family	5)
PKD	PF00801.15	gi|257053454|ref|YP_003131287.1|	-	1.6e-06	27.7	6.3	1.6e-06	27.7	4.4	3.9	3	1	0	3	3	2	1	PKD	domain
Big_3_4	PF13754.1	gi|257053454|ref|YP_003131287.1|	-	5e-05	23.5	13.2	5e-05	23.5	9.2	5.6	4	2	3	7	7	7	3	Bacterial	Ig-like	domain	(group	3)
TAT_signal	PF10518.4	gi|257053454|ref|YP_003131287.1|	-	0.00069	19.4	0.8	0.00069	19.4	0.6	2.3	2	0	0	2	2	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Big_3_2	PF12245.3	gi|257053454|ref|YP_003131287.1|	-	0.0062	16.0	2.2	11	5.6	0.1	4.2	4	0	0	4	4	4	1	Bacterial	Ig-like	domain	(group	3)
SusE	PF14292.1	gi|257053454|ref|YP_003131287.1|	-	0.025	14.3	14.1	0.27	11.0	0.7	3.5	2	1	0	3	3	3	0	SusE	outer	membrane	protein
Y_Y_Y	PF07495.8	gi|257053454|ref|YP_003131287.1|	-	0.031	14.0	0.2	1.6	8.5	0.0	3.3	3	1	1	4	4	4	0	Y_Y_Y	domain
DUF2369	PF10179.4	gi|257053454|ref|YP_003131287.1|	-	0.07	12.2	1.0	23	3.9	0.2	3.3	2	1	0	3	3	3	0	Uncharacterised	conserved	protein	(DUF2369)
ChitinaseA_N	PF08329.5	gi|257053454|ref|YP_003131287.1|	-	0.088	12.5	20.9	0.31	10.8	3.3	3.5	3	1	1	4	4	4	0	Chitinase	A,	N-terminal	domain
Big_3_3	PF13750.1	gi|257053454|ref|YP_003131287.1|	-	0.13	11.6	3.6	14	5.0	0.0	3.5	3	0	0	3	3	3	0	Bacterial	Ig-like	domain	(group	3)
Cadherin	PF00028.12	gi|257053454|ref|YP_003131287.1|	-	0.68	10.2	4.0	13	6.0	0.3	3.3	3	0	0	3	3	3	0	Cadherin	domain
Glyco_hydro_12	PF01670.11	gi|257053455|ref|YP_003131288.1|	-	5.1e-09	36.0	3.8	9.7e-09	35.1	2.6	1.4	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	12
TAT_signal	PF10518.4	gi|257053455|ref|YP_003131288.1|	-	0.22	11.6	4.4	0.62	10.2	3.0	1.8	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF303	PF03629.13	gi|257053456|ref|YP_003131289.1|	-	4.2e-32	111.3	0.0	1.2e-31	109.8	0.0	1.7	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF303)
CBM_5_12	PF02839.9	gi|257053456|ref|YP_003131289.1|	-	6.8e-12	44.7	9.1	1e-11	44.2	5.1	2.4	2	0	0	2	2	2	1	Carbohydrate	binding	domain
PKD	PF00801.15	gi|257053456|ref|YP_003131289.1|	-	1e-08	34.7	8.4	1e-08	34.7	5.8	2.3	2	0	0	2	2	2	1	PKD	domain
TAT_signal	PF10518.4	gi|257053456|ref|YP_003131289.1|	-	1.3e-05	24.8	0.5	1.3e-05	24.8	0.4	2.2	2	0	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
UCR_Fe-S_N	PF10399.4	gi|257053456|ref|YP_003131289.1|	-	0.0033	16.5	0.4	0.0069	15.5	0.3	1.5	1	0	0	1	1	1	1	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
Glyco_hydro_10	PF00331.15	gi|257053457|ref|YP_003131290.1|	-	4.4e-34	117.9	2.6	7.6e-34	117.1	1.8	1.3	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	10
fn3	PF00041.16	gi|257053457|ref|YP_003131290.1|	-	6.4e-10	39.0	0.7	6.4e-10	39.0	0.5	2.2	2	0	0	2	2	2	1	Fibronectin	type	III	domain
UCR_Fe-S_N	PF10399.4	gi|257053457|ref|YP_003131290.1|	-	0.053	12.7	2.9	0.14	11.3	2.0	1.7	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
CarboxypepD_reg	PF13620.1	gi|257053457|ref|YP_003131290.1|	-	1.5	8.8	19.5	0.27	11.3	2.0	3.8	3	1	0	3	3	3	0	Carboxypeptidase	regulatory-like	domain
Glyco_hydro_10	PF00331.15	gi|257053458|ref|YP_003131291.1|	-	8.1e-35	120.3	5.0	1.2e-34	119.7	3.4	1.2	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	10
fn3	PF00041.16	gi|257053458|ref|YP_003131291.1|	-	3.2e-11	43.2	0.7	3.2e-11	43.2	0.5	2.7	3	0	0	3	3	3	1	Fibronectin	type	III	domain
PKD	PF00801.15	gi|257053458|ref|YP_003131291.1|	-	8.9e-10	38.1	25.0	1.6e-06	27.7	6.0	4.8	3	1	0	3	3	3	2	PKD	domain
Y_Y_Y	PF07495.8	gi|257053458|ref|YP_003131291.1|	-	0.056	13.1	0.7	6.2	6.6	0.1	3.2	3	0	0	3	3	3	0	Y_Y_Y	domain
ChitinaseA_N	PF08329.5	gi|257053458|ref|YP_003131291.1|	-	2.7	7.7	20.0	0.91	9.2	0.2	4.5	4	0	0	4	4	4	0	Chitinase	A,	N-terminal	domain
PKD	PF00801.15	gi|257053459|ref|YP_003131292.1|	-	5.2e-19	67.7	24.0	5.5e-10	38.8	4.7	3.1	3	0	0	3	3	3	2	PKD	domain
ChitinaseA_N	PF08329.5	gi|257053459|ref|YP_003131292.1|	-	0.0092	15.7	0.5	0.72	9.6	0.2	2.8	2	0	0	2	2	2	1	Chitinase	A,	N-terminal	domain
DUF4625	PF15418.1	gi|257053459|ref|YP_003131292.1|	-	0.011	15.8	3.8	2.3	8.3	0.1	3.6	4	0	0	4	4	4	0	Domain	of	unknown	function	(DUF4625)
A2M_N	PF01835.14	gi|257053459|ref|YP_003131292.1|	-	0.018	15.3	1.5	2	8.7	0.1	2.4	2	0	0	2	2	2	0	MG2	domain
Y_Y_Y	PF07495.8	gi|257053459|ref|YP_003131292.1|	-	0.027	14.2	0.1	9.7	6.0	0.0	2.5	2	0	0	2	2	2	0	Y_Y_Y	domain
GxGYxYP	PF14323.1	gi|257053459|ref|YP_003131292.1|	-	0.064	11.9	3.3	1	8.0	0.2	2.3	2	0	0	2	2	2	0	GxGYxY	sequence	motif	in	domain	of	unknown	function
Isochorismatase	PF00857.15	gi|257053459|ref|YP_003131292.1|	-	0.071	13.0	0.0	2.8	7.8	0.0	2.9	2	1	0	2	2	2	0	Isochorismatase	family
SoxZ	PF08770.6	gi|257053459|ref|YP_003131292.1|	-	0.15	11.5	4.6	7.5	6.0	0.1	3.6	4	0	0	4	4	4	0	Sulphur	oxidation	protein	SoxZ
Cadherin	PF00028.12	gi|257053459|ref|YP_003131292.1|	-	0.2	11.9	2.3	8.4	6.7	0.2	2.7	2	0	0	2	2	2	0	Cadherin	domain
Big_3_4	PF13754.1	gi|257053459|ref|YP_003131292.1|	-	1.9	8.8	45.6	0.29	11.4	6.9	5.3	4	1	1	5	5	5	0	Bacterial	Ig-like	domain	(group	3)
He_PIG	PF05345.7	gi|257053459|ref|YP_003131292.1|	-	2	8.5	17.2	0.81	9.7	0.4	3.9	4	0	0	4	4	4	0	Putative	Ig	domain
Cellulase	PF00150.13	gi|257053460|ref|YP_003131293.1|	-	4.1e-27	95.1	0.4	1.1e-26	93.7	0.3	1.6	1	1	0	1	1	1	1	Cellulase	(glycosyl	hydrolase	family	5)
fn3	PF00041.16	gi|257053460|ref|YP_003131293.1|	-	3.7e-11	43.0	0.0	7.7e-11	41.9	0.0	1.6	1	0	0	1	1	1	1	Fibronectin	type	III	domain
Big_3_4	PF13754.1	gi|257053460|ref|YP_003131293.1|	-	0.0031	17.8	3.9	0.0031	17.8	2.7	2.2	2	0	0	2	2	2	1	Bacterial	Ig-like	domain	(group	3)
fn3	PF00041.16	gi|257053461|ref|YP_003131294.1|	-	2.8e-54	181.1	21.5	7.4e-14	51.6	0.2	5.5	5	0	0	5	5	5	5	Fibronectin	type	III	domain
Cellulase	PF00150.13	gi|257053461|ref|YP_003131294.1|	-	1.2e-37	129.6	1.3	1.8e-37	129.0	0.9	1.3	1	0	0	1	1	1	1	Cellulase	(glycosyl	hydrolase	family	5)
Big_3_4	PF13754.1	gi|257053461|ref|YP_003131294.1|	-	3e-15	56.2	70.0	2.9e-05	24.2	8.5	6.5	6	0	0	6	6	6	5	Bacterial	Ig-like	domain	(group	3)
DUF2369	PF10179.4	gi|257053461|ref|YP_003131294.1|	-	1.2e-05	24.5	0.0	1.3	8.0	0.0	5.0	5	0	0	5	5	5	1	Uncharacterised	conserved	protein	(DUF2369)
Big_3_2	PF12245.3	gi|257053461|ref|YP_003131294.1|	-	0.00062	19.2	6.3	5.5	6.6	0.0	4.8	5	0	0	5	5	5	2	Bacterial	Ig-like	domain	(group	3)
ChitinaseA_N	PF08329.5	gi|257053461|ref|YP_003131294.1|	-	0.0049	16.6	2.9	0.0049	16.6	2.0	5.1	3	1	2	5	5	5	3	Chitinase	A,	N-terminal	domain
Big_3_3	PF13750.1	gi|257053461|ref|YP_003131294.1|	-	0.0082	15.5	6.4	6.5	6.1	0.0	4.9	4	1	0	4	4	4	1	Bacterial	Ig-like	domain	(group	3)
TAT_signal	PF10518.4	gi|257053461|ref|YP_003131294.1|	-	0.0098	15.8	6.1	0.034	14.1	4.2	2.0	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Urb2	PF10441.4	gi|257053461|ref|YP_003131294.1|	-	0.35	10.4	0.0	0.55	9.7	0.0	1.2	1	0	0	1	1	1	0	Urb2/Npa2	family
SusE	PF14292.1	gi|257053461|ref|YP_003131294.1|	-	0.78	9.5	22.5	4.6	7.0	2.0	5.2	3	2	2	5	5	5	0	SusE	outer	membrane	protein
fn3	PF00041.16	gi|257053462|ref|YP_003131295.1|	-	4.6e-27	93.9	3.4	4.3e-13	49.2	0.0	2.7	2	0	0	2	2	2	2	Fibronectin	type	III	domain
Cellulase	PF00150.13	gi|257053462|ref|YP_003131295.1|	-	2.3e-13	50.0	0.1	3.6e-13	49.3	0.1	1.2	1	0	0	1	1	1	1	Cellulase	(glycosyl	hydrolase	family	5)
PKD	PF00801.15	gi|257053462|ref|YP_003131295.1|	-	9e-11	41.3	0.9	9e-11	41.3	0.6	4.1	2	1	2	4	4	4	1	PKD	domain
Cellulase-like	PF12876.2	gi|257053462|ref|YP_003131295.1|	-	3.3e-07	30.6	0.1	1.3e-06	28.7	0.0	2.0	2	0	0	2	2	2	1	Sugar-binding	cellulase-like
SusE	PF14292.1	gi|257053462|ref|YP_003131295.1|	-	0.00019	21.2	5.6	0.15	11.9	1.6	2.4	2	0	0	2	2	2	2	SusE	outer	membrane	protein
Big_3_4	PF13754.1	gi|257053462|ref|YP_003131295.1|	-	0.0025	18.1	6.5	0.0025	18.1	4.5	6.2	4	3	1	5	5	5	2	Bacterial	Ig-like	domain	(group	3)
Big_3_2	PF12245.3	gi|257053462|ref|YP_003131295.1|	-	0.015	14.8	0.4	0.66	9.5	0.0	2.5	2	0	0	2	2	2	0	Bacterial	Ig-like	domain	(group	3)
DUF1349	PF07081.6	gi|257053462|ref|YP_003131295.1|	-	0.048	13.0	0.0	0.12	11.7	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1349)
Glyco_hydro_2_C	PF02836.12	gi|257053462|ref|YP_003131295.1|	-	0.12	11.3	0.0	0.33	9.8	0.0	1.7	1	1	0	1	1	1	0	Glycosyl	hydrolases	family	2,	TIM	barrel	domain
ChitinaseA_N	PF08329.5	gi|257053462|ref|YP_003131295.1|	-	0.44	10.3	13.7	0.45	10.2	2.1	3.1	2	1	1	3	3	3	0	Chitinase	A,	N-terminal	domain
PKD	PF00801.15	gi|257053463|ref|YP_003131296.1|	-	8.2e-10	38.2	7.9	8.2e-10	38.2	5.5	3.0	2	0	0	2	2	2	1	PKD	domain
Pec_lyase_C	PF00544.14	gi|257053463|ref|YP_003131296.1|	-	4.8e-07	29.4	0.5	7.3e-07	28.8	0.3	1.3	1	0	0	1	1	1	1	Pectate	lyase
fn3	PF00041.16	gi|257053464|ref|YP_003131297.1|	-	1.5e-30	105.1	12.4	8.3e-12	45.0	0.2	4.2	4	0	0	4	4	4	3	Fibronectin	type	III	domain
Cellulase	PF00150.13	gi|257053464|ref|YP_003131297.1|	-	1.2e-25	90.3	2.5	3.5e-25	88.7	1.7	1.7	1	1	0	1	1	1	1	Cellulase	(glycosyl	hydrolase	family	5)
CBM_6	PF03422.10	gi|257053464|ref|YP_003131297.1|	-	1.7e-21	76.6	3.4	1.7e-21	76.6	2.3	3.3	3	1	1	4	4	4	1	Carbohydrate	binding	module	(family	6)
Big_3_2	PF12245.3	gi|257053464|ref|YP_003131297.1|	-	6.3e-06	25.6	3.4	0.96	9.0	0.0	4.1	4	0	0	4	4	4	3	Bacterial	Ig-like	domain	(group	3)
Big_3_4	PF13754.1	gi|257053464|ref|YP_003131297.1|	-	0.00018	21.7	67.5	0.00028	21.1	6.0	6.5	7	0	0	7	7	7	4	Bacterial	Ig-like	domain	(group	3)
Big_3_3	PF13750.1	gi|257053464|ref|YP_003131297.1|	-	0.077	12.4	2.5	9.3	5.6	0.1	3.6	3	0	0	3	3	3	0	Bacterial	Ig-like	domain	(group	3)
DUF2369	PF10179.4	gi|257053464|ref|YP_003131297.1|	-	0.16	11.0	0.1	24	3.9	0.0	3.3	2	1	1	4	4	4	0	Uncharacterised	conserved	protein	(DUF2369)
Cadherin	PF00028.12	gi|257053464|ref|YP_003131297.1|	-	0.62	10.3	4.1	69	3.7	0.0	4.5	4	1	0	4	4	4	0	Cadherin	domain
Glyco_hydro_9	PF00759.14	gi|257053465|ref|YP_003131298.1|	-	2.7e-102	342.9	12.8	3.6e-102	342.5	8.9	1.2	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	9
fn3	PF00041.16	gi|257053465|ref|YP_003131298.1|	-	1.2e-12	47.7	0.2	4.4e-12	45.9	0.1	2.0	1	0	0	1	1	1	1	Fibronectin	type	III	domain
CBM_3	PF00942.13	gi|257053465|ref|YP_003131298.1|	-	2.1e-06	27.6	0.0	5.2e-06	26.3	0.0	1.7	1	0	0	1	1	1	1	Cellulose	binding	domain
Big_3_4	PF13754.1	gi|257053465|ref|YP_003131298.1|	-	0.0032	17.7	8.4	0.0032	17.7	5.8	2.8	2	0	0	2	2	2	1	Bacterial	Ig-like	domain	(group	3)
SusE	PF14292.1	gi|257053465|ref|YP_003131298.1|	-	9	6.1	8.3	0.27	11.0	1.1	2.0	2	0	0	2	2	2	0	SusE	outer	membrane	protein
DUF1830	PF08865.6	gi|257053466|ref|YP_003131299.1|	-	0.0032	17.0	0.0	0.46	10.1	0.0	2.3	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF1830)
TAT_signal	PF10518.4	gi|257053466|ref|YP_003131299.1|	-	0.012	15.5	0.5	0.022	14.7	0.4	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Trypan_PARP	PF05887.6	gi|257053466|ref|YP_003131299.1|	-	2.7	7.8	21.1	8.4	6.2	14.6	1.8	1	0	0	1	1	1	0	Procyclic	acidic	repetitive	protein	(PARP)
RIO1	PF01163.17	gi|257053467|ref|YP_003131300.1|	-	1.7e-47	161.2	0.2	2.3e-47	160.8	0.1	1.1	1	0	0	1	1	1	1	RIO1	family
Rio2_N	PF09202.6	gi|257053467|ref|YP_003131300.1|	-	1.7e-27	95.2	0.0	3.5e-27	94.2	0.0	1.5	1	0	0	1	1	1	1	Rio2,	N-terminal
APH	PF01636.18	gi|257053467|ref|YP_003131300.1|	-	2e-05	24.4	1.3	0.14	11.8	1.3	2.5	1	1	1	2	2	2	2	Phosphotransferase	enzyme	family
Pkinase	PF00069.20	gi|257053467|ref|YP_003131300.1|	-	0.00026	20.2	0.0	0.00039	19.6	0.0	1.2	1	0	0	1	1	1	1	Protein	kinase	domain
DUF2513	PF10711.4	gi|257053467|ref|YP_003131300.1|	-	0.059	13.4	0.0	0.22	11.5	0.0	1.9	2	0	0	2	2	2	0	Hypothetical	protein	(DUF2513)
AP_endonuc_2	PF01261.19	gi|257053468|ref|YP_003131301.1|	-	9.9e-26	90.3	2.2	1.3e-25	89.9	0.7	1.6	2	0	0	2	2	2	1	Xylose	isomerase-like	TIM	barrel
Methyltransf_11	PF08241.7	gi|257053469|ref|YP_003131302.1|	-	1.2e-16	60.9	0.1	4.9e-16	58.9	0.0	2.0	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|257053469|ref|YP_003131302.1|	-	3.1e-14	53.0	0.0	4.7e-14	52.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|257053469|ref|YP_003131302.1|	-	4e-11	42.7	0.0	1.4e-10	40.9	0.0	1.9	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|257053469|ref|YP_003131302.1|	-	6.5e-09	36.0	0.0	2.1e-08	34.4	0.0	1.9	2	1	0	2	2	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|257053469|ref|YP_003131302.1|	-	3.5e-07	30.6	0.0	3.9e-06	27.2	0.0	2.5	2	1	0	2	2	2	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|257053469|ref|YP_003131302.1|	-	6.3e-07	29.9	0.3	8.5e-06	26.3	0.1	2.6	2	2	0	2	2	2	1	Methyltransferase	domain
MetW	PF07021.7	gi|257053469|ref|YP_003131302.1|	-	8.7e-06	25.2	0.0	1.7e-05	24.2	0.0	1.4	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
RrnaAD	PF00398.15	gi|257053469|ref|YP_003131302.1|	-	1.3e-05	24.4	0.0	1.9e-05	23.8	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_26	PF13659.1	gi|257053469|ref|YP_003131302.1|	-	3e-05	24.0	3.5	0.0002	21.3	2.4	2.3	1	1	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|257053469|ref|YP_003131302.1|	-	4.1e-05	22.8	0.0	0.00028	20.0	0.0	2.1	2	1	0	2	2	2	1	ubiE/COQ5	methyltransferase	family
PCMT	PF01135.14	gi|257053469|ref|YP_003131302.1|	-	0.00022	20.8	0.0	0.00038	20.0	0.0	1.3	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_32	PF13679.1	gi|257053469|ref|YP_003131302.1|	-	0.00034	20.3	0.0	0.00091	18.9	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|257053469|ref|YP_003131302.1|	-	0.0016	17.8	0.0	0.0031	16.9	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	small	domain
FtsJ	PF01728.14	gi|257053469|ref|YP_003131302.1|	-	0.0053	16.7	0.0	0.0077	16.2	0.0	1.3	1	0	0	1	1	1	1	FtsJ-like	methyltransferase
PrmA	PF06325.8	gi|257053469|ref|YP_003131302.1|	-	0.038	13.1	0.1	0.086	11.9	0.0	1.5	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
ATP_bind_3	PF01171.15	gi|257053471|ref|YP_003131304.1|	-	2.1e-14	53.4	0.0	3e-14	52.9	0.0	1.3	1	0	0	1	1	1	1	PP-loop	family
PAPS_reduct	PF01507.14	gi|257053471|ref|YP_003131304.1|	-	5.8e-07	29.4	0.0	8.5e-07	28.9	0.0	1.2	1	0	0	1	1	1	1	Phosphoadenosine	phosphosulfate	reductase	family
NAD_synthase	PF02540.12	gi|257053471|ref|YP_003131304.1|	-	0.00021	20.2	0.0	0.00038	19.4	0.0	1.4	1	0	0	1	1	1	1	NAD	synthase
Asn_synthase	PF00733.16	gi|257053471|ref|YP_003131304.1|	-	0.0024	17.4	0.0	0.0039	16.7	0.0	1.3	1	0	0	1	1	1	1	Asparagine	synthase
tRNA_Me_trans	PF03054.11	gi|257053471|ref|YP_003131304.1|	-	0.004	15.7	0.0	0.006	15.1	0.0	1.2	1	0	0	1	1	1	1	tRNA	methyl	transferase
DUF2392	PF10288.4	gi|257053471|ref|YP_003131304.1|	-	0.009	16.3	0.0	0.015	15.5	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2392)
DZR	PF12773.2	gi|257053471|ref|YP_003131304.1|	-	0.5	10.2	7.6	1.1	9.1	0.7	3.2	3	0	0	3	3	3	0	Double	zinc	ribbon
ZZ	PF00569.12	gi|257053471|ref|YP_003131304.1|	-	1.9	8.0	5.1	9.1	5.9	0.1	2.6	2	0	0	2	2	2	0	Zinc	finger,	ZZ	type
FtsZ_C	PF12327.3	gi|257053472|ref|YP_003131305.1|	-	2.4e-34	117.2	0.7	2.4e-34	117.2	0.5	2.6	2	1	0	2	2	2	1	FtsZ	family,	C-terminal	domain
Tubulin	PF00091.20	gi|257053472|ref|YP_003131305.1|	-	1.4e-32	113.2	3.0	6.5e-32	111.1	2.1	1.9	1	1	0	1	1	1	1	Tubulin/FtsZ	family,	GTPase	domain
ThiF	PF00899.16	gi|257053472|ref|YP_003131305.1|	-	0.023	14.5	0.0	0.063	13.0	0.0	1.7	1	0	0	1	1	1	0	ThiF	family
RHH_1	PF01402.16	gi|257053473|ref|YP_003131306.1|	-	1.2e-07	31.2	0.2	1.7e-07	30.7	0.2	1.3	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
RHH_2	PF03693.9	gi|257053473|ref|YP_003131306.1|	-	0.0066	16.5	0.1	0.0071	16.4	0.1	1.2	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0156)
DUF3780	PF12635.2	gi|257053473|ref|YP_003131306.1|	-	0.09	12.2	0.4	0.13	11.7	0.2	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3780)
zf-ribbon_3	PF13248.1	gi|257053474|ref|YP_003131307.1|	-	6.4e-13	47.4	9.9	9.6e-08	31.0	2.0	2.3	2	0	0	2	2	2	2	zinc-ribbon	domain
DZR	PF12773.2	gi|257053474|ref|YP_003131307.1|	-	5.9e-12	45.2	20.6	1.6e-08	34.1	7.3	1.8	1	1	1	2	2	2	2	Double	zinc	ribbon
zinc_ribbon_2	PF13240.1	gi|257053474|ref|YP_003131307.1|	-	1.3e-09	37.2	11.0	1.1e-05	24.7	2.5	2.4	2	0	0	2	2	2	2	zinc-ribbon	domain
Prok-RING_1	PF14446.1	gi|257053474|ref|YP_003131307.1|	-	0.00013	21.6	8.7	0.0012	18.4	1.9	2.3	1	1	1	2	2	2	1	Prokaryotic	RING	finger	family	1
zf-NADH-PPase	PF09297.6	gi|257053474|ref|YP_003131307.1|	-	0.00039	19.8	9.0	0.26	10.8	0.0	3.4	3	0	0	3	3	3	2	NADH	pyrophosphatase	zinc	ribbon	domain
UPF0547	PF10571.4	gi|257053474|ref|YP_003131307.1|	-	0.0006	19.4	6.7	0.046	13.4	1.6	2.3	2	0	0	2	2	2	2	Uncharacterised	protein	family	UPF0547
Nudix_N_2	PF14803.1	gi|257053474|ref|YP_003131307.1|	-	0.00067	19.2	10.1	1.6	8.4	1.4	3.7	3	1	0	3	3	3	2	Nudix	N-terminal
PolC_DP2	PF03833.8	gi|257053474|ref|YP_003131307.1|	-	0.0012	16.6	2.8	0.0014	16.4	1.9	1.1	1	0	0	1	1	1	1	DNA	polymerase	II	large	subunit	DP2
Cys_rich_KTR	PF14205.1	gi|257053474|ref|YP_003131307.1|	-	0.0044	16.4	1.9	1.3	8.5	0.2	2.4	2	0	0	2	2	2	2	Cysteine-rich	KTR
RHH_1	PF01402.16	gi|257053474|ref|YP_003131307.1|	-	0.0094	15.8	2.4	0.032	14.1	0.0	2.9	3	0	0	3	3	3	1	Ribbon-helix-helix	protein,	copG	family
OrfB_Zn_ribbon	PF07282.6	gi|257053474|ref|YP_003131307.1|	-	0.013	15.1	11.9	0.76	9.4	8.3	2.5	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Zn-ribbon_8	PF09723.5	gi|257053474|ref|YP_003131307.1|	-	0.018	14.9	11.7	0.18	11.7	2.9	3.5	2	2	1	3	3	3	0	Zinc	ribbon	domain
DNA_ligase_ZBD	PF03119.11	gi|257053474|ref|YP_003131307.1|	-	0.026	14.2	2.1	2.8	7.7	0.1	2.8	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
NOB1_Zn_bind	PF08772.6	gi|257053474|ref|YP_003131307.1|	-	0.046	13.5	11.6	1.8	8.4	3.7	2.8	1	1	1	2	2	2	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
DUF2191	PF09957.4	gi|257053474|ref|YP_003131307.1|	-	0.063	13.0	0.2	0.24	11.2	0.1	2.1	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2191)
PSK_trans_fac	PF07704.6	gi|257053474|ref|YP_003131307.1|	-	0.064	13.9	1.6	8.8	7.0	0.2	2.3	1	1	1	2	2	2	0	Rv0623-like	transcription	factor
Ribosomal_L32p	PF01783.18	gi|257053474|ref|YP_003131307.1|	-	0.086	13.0	2.4	0.16	12.1	0.7	2.0	1	1	1	2	2	2	0	Ribosomal	L32p	protein	family
zinc-ribbons_6	PF07191.7	gi|257053474|ref|YP_003131307.1|	-	0.24	11.2	9.2	0.11	12.2	3.2	2.2	1	1	1	2	2	2	0	zinc-ribbons
DUF2321	PF10083.4	gi|257053474|ref|YP_003131307.1|	-	0.35	10.3	4.7	0.15	11.5	1.3	1.7	2	1	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2321)
zf-C3HC4_3	PF13920.1	gi|257053474|ref|YP_003131307.1|	-	0.8	9.4	8.7	0.7	9.6	1.1	2.3	1	1	1	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
Prok-RING_4	PF14447.1	gi|257053474|ref|YP_003131307.1|	-	0.96	9.0	6.5	2.8	7.5	0.0	2.9	2	1	1	3	3	3	0	Prokaryotic	RING	finger	family	4
Sgf11	PF08209.6	gi|257053474|ref|YP_003131307.1|	-	1.2	8.4	9.0	5.2	6.4	0.5	3.2	2	1	1	3	3	3	0	Sgf11	(transcriptional	regulation	protein)
HypA	PF01155.14	gi|257053474|ref|YP_003131307.1|	-	1.5	8.5	10.7	3	7.5	4.7	2.4	1	1	1	2	2	2	0	Hydrogenase	expression/synthesis	hypA	family
DUF826	PF05696.6	gi|257053474|ref|YP_003131307.1|	-	2.5	8.3	6.0	14	5.8	3.9	2.5	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF826)
Auto_anti-p27	PF06677.7	gi|257053474|ref|YP_003131307.1|	-	2.8	7.7	9.6	6.6	6.5	2.8	2.8	2	1	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
TF_Zn_Ribbon	PF08271.7	gi|257053474|ref|YP_003131307.1|	-	2.9	7.2	15.3	0.76	9.1	0.5	3.4	2	1	1	3	3	3	0	TFIIB	zinc-binding
DUF164	PF02591.10	gi|257053474|ref|YP_003131307.1|	-	3.7	7.4	8.8	14	5.6	0.1	3.0	2	1	0	2	2	2	0	Putative	zinc	ribbon	domain
YhfH	PF14149.1	gi|257053474|ref|YP_003131307.1|	-	6.6	6.6	8.8	2.9	7.7	0.0	3.5	4	0	0	4	4	4	0	YhfH-like	protein
zf-ISL3	PF14690.1	gi|257053474|ref|YP_003131307.1|	-	7.8	6.6	11.8	6.2	6.9	0.5	3.4	2	1	1	3	3	3	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
PAS_4	PF08448.5	gi|257053475|ref|YP_003131308.1|	-	7.4e-26	90.3	1.6	1.4e-15	57.2	0.1	2.9	2	0	0	2	2	2	2	PAS	fold
Response_reg	PF00072.19	gi|257053475|ref|YP_003131308.1|	-	2.9e-22	78.7	0.0	8.9e-22	77.2	0.0	1.8	1	0	0	1	1	1	1	Response	regulator	receiver	domain
PAS_9	PF13426.1	gi|257053475|ref|YP_003131308.1|	-	5.2e-21	74.9	0.0	6.4e-13	48.9	0.0	2.7	2	0	0	2	2	2	2	PAS	domain
HATPase_c	PF02518.21	gi|257053475|ref|YP_003131308.1|	-	7.3e-18	64.3	0.0	1.8e-17	63.0	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS	PF00989.19	gi|257053475|ref|YP_003131308.1|	-	4.1e-13	49.0	0.2	8.5e-09	35.1	0.0	3.3	3	0	0	3	3	3	2	PAS	fold
GAF_2	PF13185.1	gi|257053475|ref|YP_003131308.1|	-	1e-12	48.8	1.2	2e-12	47.8	0.2	2.0	2	0	0	2	2	1	1	GAF	domain
PAS_8	PF13188.1	gi|257053475|ref|YP_003131308.1|	-	1.3e-09	37.5	0.0	0.0033	17.2	0.0	3.1	2	0	0	2	2	2	2	PAS	domain
GAF_3	PF13492.1	gi|257053475|ref|YP_003131308.1|	-	2.2e-09	37.4	0.2	9.9e-09	35.3	0.0	2.2	2	0	0	2	2	2	1	GAF	domain
PAS_7	PF12860.2	gi|257053475|ref|YP_003131308.1|	-	1.8e-05	24.7	2.2	0.063	13.2	0.0	3.9	3	2	1	4	4	4	2	PAS	fold
GAF	PF01590.21	gi|257053475|ref|YP_003131308.1|	-	2.3e-05	24.5	0.5	0.00012	22.2	0.1	2.4	2	0	0	2	2	2	1	GAF	domain
PAS_3	PF08447.6	gi|257053475|ref|YP_003131308.1|	-	0.0011	19.0	0.0	0.0099	15.9	0.0	2.6	2	0	0	2	2	2	1	PAS	fold
HATPase_c_2	PF13581.1	gi|257053475|ref|YP_003131308.1|	-	0.0049	16.6	1.3	0.022	14.5	0.0	2.6	3	0	0	3	3	3	1	Histidine	kinase-like	ATPase	domain
HisKA	PF00512.20	gi|257053475|ref|YP_003131308.1|	-	0.0055	16.6	3.6	0.0055	16.6	2.5	3.6	4	0	0	4	4	4	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_3	PF13589.1	gi|257053475|ref|YP_003131308.1|	-	0.012	15.2	0.0	0.026	14.1	0.0	1.5	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
FUSC	PF04632.7	gi|257053475|ref|YP_003131308.1|	-	4.9	5.4	5.7	7.9	4.7	3.0	1.9	2	0	0	2	2	2	0	Fusaric	acid	resistance	protein	family
Aldo_ket_red	PF00248.16	gi|257053476|ref|YP_003131309.1|	-	1.1e-61	208.2	0.0	1.2e-61	208.0	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
Aldolase_2	PF10120.4	gi|257053477|ref|YP_003131310.1|	-	2e-42	144.4	0.0	2.6e-42	144.0	0.0	1.1	1	0	0	1	1	1	1	Putative	aldolase
HTH_31	PF13560.1	gi|257053477|ref|YP_003131310.1|	-	8.3e-05	22.7	0.2	0.00078	19.5	0.1	2.4	1	1	0	1	1	1	1	Helix-turn-helix	domain
HTH_37	PF13744.1	gi|257053477|ref|YP_003131310.1|	-	0.00011	21.8	0.0	0.00021	21.0	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_3	PF01381.17	gi|257053477|ref|YP_003131310.1|	-	0.00012	21.8	0.0	0.00022	21.0	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix
Sigma70_r4	PF04545.11	gi|257053477|ref|YP_003131310.1|	-	0.00013	21.1	0.0	0.00034	19.8	0.0	1.7	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_23	PF13384.1	gi|257053477|ref|YP_003131310.1|	-	0.00063	19.3	0.0	0.0018	17.8	0.0	1.8	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_19	PF12844.2	gi|257053477|ref|YP_003131310.1|	-	0.0007	19.6	0.0	0.0014	18.6	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_38	PF13936.1	gi|257053477|ref|YP_003131310.1|	-	0.00078	18.9	0.0	0.0017	17.8	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|257053477|ref|YP_003131310.1|	-	0.0012	18.4	0.1	0.0029	17.2	0.0	1.6	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.1	gi|257053477|ref|YP_003131310.1|	-	0.002	17.5	0.0	0.0037	16.6	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
RepB	PF07506.6	gi|257053477|ref|YP_003131310.1|	-	0.0032	17.3	0.0	0.006	16.4	0.0	1.4	1	0	0	1	1	1	1	RepB	plasmid	partitioning	protein
HTH_11	PF08279.7	gi|257053477|ref|YP_003131310.1|	-	0.0063	16.1	0.0	0.012	15.2	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
HTH_Crp_2	PF13545.1	gi|257053477|ref|YP_003131310.1|	-	0.01	15.6	0.0	0.024	14.4	0.0	1.6	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_26	PF13443.1	gi|257053477|ref|YP_003131310.1|	-	0.03	14.5	0.0	0.054	13.7	0.0	1.4	1	0	0	1	1	1	0	Cro/C1-type	HTH	DNA-binding	domain
HTH_5	PF01022.15	gi|257053477|ref|YP_003131310.1|	-	0.042	13.5	0.0	0.08	12.6	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
TetR_N	PF00440.18	gi|257053477|ref|YP_003131310.1|	-	0.055	13.1	0.0	0.19	11.3	0.0	1.9	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	tetR	family
Sigma70_r4_2	PF08281.7	gi|257053477|ref|YP_003131310.1|	-	0.063	12.7	0.0	0.13	11.7	0.0	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
DUF2481	PF10654.4	gi|257053477|ref|YP_003131310.1|	-	0.064	12.9	0.0	0.1	12.3	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2481)
HTH_20	PF12840.2	gi|257053477|ref|YP_003131310.1|	-	0.071	12.9	0.1	0.18	11.6	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
Cro	PF09048.5	gi|257053477|ref|YP_003131310.1|	-	0.09	12.4	0.0	0.37	10.4	0.0	2.0	1	0	0	1	1	1	0	Cro
MarR	PF01047.17	gi|257053477|ref|YP_003131310.1|	-	0.12	12.0	0.0	0.31	10.7	0.0	1.6	1	0	0	1	1	1	0	MarR	family
Hydantoinase_A	PF01968.13	gi|257053478|ref|YP_003131311.1|	-	5.4e-90	301.4	18.5	3.4e-87	292.2	7.7	2.4	2	0	0	2	2	2	2	Hydantoinase/oxoprolinase
Hydant_A_N	PF05378.8	gi|257053478|ref|YP_003131311.1|	-	3.3e-47	160.2	3.2	4.7e-47	159.7	0.0	2.3	2	0	0	2	2	2	1	Hydantoinase/oxoprolinase	N-terminal	region
MutL	PF13941.1	gi|257053478|ref|YP_003131311.1|	-	0.018	13.3	9.4	0.12	10.7	0.8	2.3	2	0	0	2	2	2	0	MutL	protein
DNA_pol3_beta_2	PF02767.11	gi|257053478|ref|YP_003131311.1|	-	0.16	12.0	0.1	0.34	10.9	0.0	1.5	1	0	0	1	1	1	0	DNA	polymerase	III	beta	subunit,	central	domain
Hydantoinase_B	PF02538.9	gi|257053479|ref|YP_003131312.1|	-	4.5e-147	490.4	0.0	5.5e-147	490.1	0.0	1.0	1	0	0	1	1	1	1	Hydantoinase	B/oxoprolinase
DUF4129	PF13559.1	gi|257053480|ref|YP_003131313.1|	-	7.1e-15	54.7	3.1	1.8e-14	53.4	2.2	1.8	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4129)
DUF58	PF01882.13	gi|257053481|ref|YP_003131314.1|	-	1.1e-15	57.4	0.6	3.3e-15	55.9	0.4	1.9	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF58
DUF11	PF01345.13	gi|257053481|ref|YP_003131314.1|	-	1e-07	31.8	2.0	2.7e-07	30.5	1.4	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF11
NPCBM_assoc	PF10633.4	gi|257053481|ref|YP_003131314.1|	-	0.00071	19.5	0.8	0.0085	16.1	0.0	2.8	3	0	0	3	3	3	1	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
HTH_11	PF08279.7	gi|257053483|ref|YP_003131316.1|	-	7.4e-06	25.5	0.0	1e-05	25.0	0.0	1.2	1	0	0	1	1	1	1	HTH	domain
HTH_20	PF12840.2	gi|257053483|ref|YP_003131316.1|	-	0.00019	21.1	0.0	0.00022	20.9	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_23	PF13384.1	gi|257053483|ref|YP_003131316.1|	-	0.0033	17.0	0.0	0.005	16.4	0.0	1.3	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_CodY	PF08222.6	gi|257053483|ref|YP_003131316.1|	-	0.0034	16.6	0.0	0.0045	16.3	0.0	1.1	1	0	0	1	1	1	1	CodY	helix-turn-helix	domain
HTH_Mga	PF08280.6	gi|257053483|ref|YP_003131316.1|	-	0.0037	17.0	0.1	0.0049	16.5	0.1	1.2	1	0	0	1	1	1	1	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
Sigma70_r4	PF04545.11	gi|257053483|ref|YP_003131316.1|	-	0.009	15.3	0.0	0.016	14.4	0.0	1.6	1	1	0	1	1	1	1	Sigma-70,	region	4
HTH_Crp_2	PF13545.1	gi|257053483|ref|YP_003131316.1|	-	0.013	15.3	0.0	0.014	15.1	0.0	1.1	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_17	PF12728.2	gi|257053483|ref|YP_003131316.1|	-	0.014	15.6	0.2	0.023	14.9	0.0	1.6	2	1	0	2	2	1	0	Helix-turn-helix	domain
SgrR_N	PF12793.2	gi|257053483|ref|YP_003131316.1|	-	0.059	13.3	0.0	0.089	12.7	0.0	1.4	1	1	1	2	2	2	0	Sugar	transport-related	sRNA	regulator	N-term
HTH_7	PF02796.10	gi|257053483|ref|YP_003131316.1|	-	0.061	13.2	0.0	0.088	12.6	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	resolvase
HTH_AsnC-type	PF13404.1	gi|257053483|ref|YP_003131316.1|	-	0.11	12.0	0.1	0.17	11.4	0.0	1.5	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
HTH_30	PF13556.1	gi|257053483|ref|YP_003131316.1|	-	0.12	12.0	0.0	0.16	11.5	0.0	1.2	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
GerE	PF00196.14	gi|257053483|ref|YP_003131316.1|	-	0.14	11.5	0.0	0.19	11.0	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
DUF4129	PF13559.1	gi|257053484|ref|YP_003131317.1|	-	8.7e-15	54.4	4.0	1.8e-14	53.4	2.8	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4129)
DUF3357	PF11837.3	gi|257053484|ref|YP_003131317.1|	-	0.51	10.2	3.1	1.6	8.5	0.0	3.0	2	1	2	4	4	4	0	Domain	of	unknown	function	(DUF3357)
DUF58	PF01882.13	gi|257053485|ref|YP_003131318.1|	-	1.9e-19	69.5	1.5	4.5e-19	68.3	0.3	2.2	2	0	0	2	2	2	1	Protein	of	unknown	function	DUF58
DUF11	PF01345.13	gi|257053485|ref|YP_003131318.1|	-	6.6e-07	29.2	0.2	1.7e-05	24.7	0.0	2.7	2	0	0	2	2	2	1	Domain	of	unknown	function	DUF11
TctB	PF07331.6	gi|257053485|ref|YP_003131318.1|	-	0.0022	17.6	1.3	0.091	12.4	0.0	2.4	2	0	0	2	2	2	1	Tripartite	tricarboxylate	transporter	TctB	family
CARDB	PF07705.6	gi|257053485|ref|YP_003131318.1|	-	0.0079	16.2	0.0	1.2	9.2	0.0	2.3	1	1	1	2	2	2	1	CARDB
NPCBM_assoc	PF10633.4	gi|257053485|ref|YP_003131318.1|	-	0.016	15.2	0.0	0.071	13.1	0.0	2.1	1	0	0	1	1	1	0	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
HAD	PF12710.2	gi|257053485|ref|YP_003131318.1|	-	0.017	15.3	0.0	1.1	9.3	0.0	2.3	2	0	0	2	2	2	0	haloacid	dehalogenase-like	hydrolase
NfeD	PF01957.13	gi|257053485|ref|YP_003131318.1|	-	6	6.9	8.4	0.18	11.9	1.1	1.9	2	0	0	2	2	2	0	NfeD-like	C-terminal,	partner-binding
DUF3341	PF11821.3	gi|257053486|ref|YP_003131319.1|	-	3.5	7.0	6.3	0.45	9.9	0.6	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3341)
AAA_3	PF07726.6	gi|257053487|ref|YP_003131320.1|	-	5.2e-66	220.2	0.0	8.5e-66	219.5	0.0	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_5	PF07728.9	gi|257053487|ref|YP_003131320.1|	-	4.9e-16	58.7	0.0	1.5e-15	57.1	0.0	1.8	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.24	gi|257053487|ref|YP_003131320.1|	-	2.9e-07	30.7	0.0	2.1e-06	27.9	0.0	2.5	3	1	0	3	3	3	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
MCM	PF00493.18	gi|257053487|ref|YP_003131320.1|	-	1.7e-06	27.0	0.1	0.0051	15.6	0.0	2.4	2	1	0	2	2	2	2	MCM2/3/5	family
Sigma54_activat	PF00158.21	gi|257053487|ref|YP_003131320.1|	-	2e-05	24.1	0.0	0.00078	18.9	0.0	2.6	1	1	1	2	2	2	1	Sigma-54	interaction	domain
Mg_chelatase	PF01078.16	gi|257053487|ref|YP_003131320.1|	-	0.0013	17.9	0.2	0.12	11.5	0.0	2.2	2	0	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
AAA_2	PF07724.9	gi|257053487|ref|YP_003131320.1|	-	0.0064	16.4	0.0	0.014	15.2	0.0	1.5	1	0	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
RuvB_N	PF05496.7	gi|257053487|ref|YP_003131320.1|	-	0.017	14.2	0.0	0.17	10.8	0.0	2.3	1	1	0	1	1	1	0	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_18	PF13238.1	gi|257053487|ref|YP_003131320.1|	-	0.025	14.8	0.0	0.055	13.7	0.0	1.7	2	0	0	2	2	1	0	AAA	domain
Viral_helicase1	PF01443.13	gi|257053487|ref|YP_003131320.1|	-	0.027	13.9	0.0	0.066	12.7	0.0	1.5	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
AAA_17	PF13207.1	gi|257053487|ref|YP_003131320.1|	-	0.066	14.0	0.0	0.19	12.5	0.0	1.8	2	1	0	2	2	2	0	AAA	domain
Mg_chelatase_2	PF13335.1	gi|257053487|ref|YP_003131320.1|	-	0.08	13.3	0.2	0.23	11.8	0.1	1.8	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_22	PF13401.1	gi|257053487|ref|YP_003131320.1|	-	0.12	12.5	0.0	0.37	10.9	0.0	2.0	1	1	0	1	1	1	0	AAA	domain
AAA_16	PF13191.1	gi|257053487|ref|YP_003131320.1|	-	0.24	11.3	1.5	3.2	7.6	0.0	2.4	2	1	0	2	2	2	0	AAA	ATPase	domain
DUF2070	PF09843.4	gi|257053488|ref|YP_003131321.1|	-	1.1e-54	184.6	0.7	1.9e-54	183.8	0.2	1.6	2	0	0	2	2	2	1	Predicted	membrane	protein	(DUF2070)
Glyco_hydro_43	PF04616.9	gi|257053489|ref|YP_003131322.1|	-	1.6e-55	188.2	7.3	2.2e-55	187.7	5.1	1.2	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	43
EF-hand_7	PF13499.1	gi|257053489|ref|YP_003131322.1|	-	0.00016	21.7	0.8	0.018	15.1	0.1	2.6	2	0	0	2	2	2	1	EF-hand	domain	pair
EF-hand_1	PF00036.27	gi|257053489|ref|YP_003131322.1|	-	0.0066	15.6	5.4	0.24	10.7	0.0	3.1	3	0	0	3	3	3	2	EF	hand
EF-hand_6	PF13405.1	gi|257053489|ref|YP_003131322.1|	-	0.021	14.6	4.4	1.9	8.6	0.2	3.4	3	0	0	3	3	3	0	EF-hand	domain
Glyco_hydro_32N	PF00251.15	gi|257053489|ref|YP_003131322.1|	-	0.026	13.9	0.5	0.19	11.0	0.1	2.0	1	1	1	2	2	2	0	Glycosyl	hydrolases	family	32	N-terminal	domain
TAT_signal	PF10518.4	gi|257053489|ref|YP_003131322.1|	-	0.19	11.7	0.2	0.47	10.5	0.1	1.7	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
GATase	PF00117.23	gi|257053490|ref|YP_003131323.1|	-	1.5e-33	115.9	0.0	1.7e-33	115.7	0.0	1.0	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.8	gi|257053490|ref|YP_003131323.1|	-	1.7e-12	47.2	1.3	4e-11	42.7	0.1	2.8	1	1	1	2	2	2	1	Peptidase	C26
GATase_3	PF07685.9	gi|257053490|ref|YP_003131323.1|	-	0.046	13.3	0.1	0.09	12.3	0.1	1.5	1	0	0	1	1	1	0	CobB/CobQ-like	glutamine	amidotransferase	domain
HATPase_c	PF02518.21	gi|257053491|ref|YP_003131324.1|	-	0.0078	15.9	0.1	0.02	14.6	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
DUF1469	PF07332.6	gi|257053491|ref|YP_003131324.1|	-	0.031	13.9	9.4	0.17	11.6	0.1	3.1	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1469)
HisKA	PF00512.20	gi|257053491|ref|YP_003131324.1|	-	0.043	13.8	0.2	0.084	12.8	0.1	1.4	1	0	0	1	1	1	0	His	Kinase	A	(phospho-acceptor)	domain
C1_1	PF00130.17	gi|257053492|ref|YP_003131325.1|	-	0.032	13.9	0.2	0.032	13.9	0.1	2.6	3	0	0	3	3	3	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
DUF192	PF02643.10	gi|257053493|ref|YP_003131326.1|	-	9e-15	54.2	0.0	1.1e-14	54.0	0.0	1.1	1	0	0	1	1	1	1	Uncharacterized	ACR,	COG1430
MoeA_C	PF03454.10	gi|257053493|ref|YP_003131326.1|	-	0.0022	17.8	0.1	0.0052	16.7	0.1	1.6	2	0	0	2	2	2	1	MoeA	C-terminal	region	(domain	IV)
HMGL-like	PF00682.14	gi|257053494|ref|YP_003131327.1|	-	2.8e-61	207.2	1.0	2.8e-61	207.2	0.7	1.8	2	0	0	2	2	2	1	HMGL-like
LeuA_dimer	PF08502.5	gi|257053494|ref|YP_003131327.1|	-	2.8e-29	101.5	1.7	5.2e-29	100.7	1.2	1.5	1	0	0	1	1	1	1	LeuA	allosteric	(dimerisation)	domain
DUF4349	PF14257.1	gi|257053495|ref|YP_003131328.1|	-	0.076	12.2	0.0	0.092	11.9	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4349)
Multi_Drug_Res	PF00893.14	gi|257053496|ref|YP_003131329.1|	-	5.4e-28	97.2	5.3	7.9e-28	96.7	3.7	1.2	1	0	0	1	1	1	1	Small	Multidrug	Resistance	protein
EamA	PF00892.15	gi|257053496|ref|YP_003131329.1|	-	0.015	15.3	11.3	0.025	14.6	7.8	1.4	1	1	0	1	1	1	0	EamA-like	transporter	family
EmrE	PF13536.1	gi|257053496|ref|YP_003131329.1|	-	0.38	10.9	14.0	3.4	7.8	9.7	1.9	1	1	0	1	1	1	0	Multidrug	resistance	efflux	transporter
CD20	PF04103.10	gi|257053496|ref|YP_003131329.1|	-	0.65	9.9	4.2	0.96	9.3	2.9	1.2	1	0	0	1	1	1	0	CD20-like	family
Bax1-I	PF01027.15	gi|257053496|ref|YP_003131329.1|	-	1.5	8.3	10.4	2.2	7.8	7.2	1.3	1	1	0	1	1	1	0	Inhibitor	of	apoptosis-promoting	Bax1
DUF4328	PF14219.1	gi|257053496|ref|YP_003131329.1|	-	6.3	6.0	7.8	1.4	8.1	1.5	2.0	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4328)
HAD_2	PF13419.1	gi|257053497|ref|YP_003131330.1|	-	1.8e-14	54.3	0.3	2.3e-14	53.9	0.2	1.2	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|257053497|ref|YP_003131330.1|	-	2.6e-11	43.0	0.1	4.8e-11	42.2	0.1	1.4	1	0	0	1	1	1	1	HAD-hyrolase-like
Hydrolase	PF00702.21	gi|257053497|ref|YP_003131330.1|	-	2e-06	28.3	0.2	0.0044	17.4	0.0	2.1	1	1	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.2	gi|257053497|ref|YP_003131330.1|	-	0.036	14.2	0.1	0.074	13.2	0.0	1.6	1	1	0	1	1	1	0	haloacid	dehalogenase-like	hydrolase
AhpC-TSA	PF00578.16	gi|257053498|ref|YP_003131331.1|	-	1.8e-19	69.6	0.0	2.4e-19	69.2	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.5	gi|257053498|ref|YP_003131331.1|	-	6.1e-05	22.6	0.0	8.3e-05	22.1	0.0	1.2	1	0	0	1	1	1	1	Redoxin
LMWPc	PF01451.16	gi|257053499|ref|YP_003131332.1|	-	5.6e-26	91.5	0.0	6.6e-26	91.2	0.0	1.1	1	0	0	1	1	1	1	Low	molecular	weight	phosphotyrosine	protein	phosphatase
HTH_5	PF01022.15	gi|257053500|ref|YP_003131333.1|	-	7e-17	60.8	0.6	1.3e-16	60.0	0.4	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.2	gi|257053500|ref|YP_003131333.1|	-	1.9e-12	46.7	0.5	2.6e-12	46.3	0.1	1.4	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_27	PF13463.1	gi|257053500|ref|YP_003131333.1|	-	9.1e-05	22.7	0.0	0.00024	21.3	0.0	1.7	1	1	1	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_34	PF13601.1	gi|257053500|ref|YP_003131333.1|	-	0.0011	18.9	0.0	0.0018	18.2	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.14	gi|257053500|ref|YP_003131333.1|	-	0.0087	15.7	0.0	0.016	14.9	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_45	PF14947.1	gi|257053500|ref|YP_003131333.1|	-	0.015	15.1	0.0	0.024	14.4	0.0	1.5	1	1	0	1	1	1	0	Winged	helix-turn-helix
B-block_TFIIIC	PF04182.7	gi|257053500|ref|YP_003131333.1|	-	0.038	13.8	0.0	0.06	13.2	0.0	1.3	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
CDC37_C	PF08564.5	gi|257053500|ref|YP_003131333.1|	-	0.078	12.8	0.1	6.4	6.6	0.1	2.1	1	1	1	2	2	2	0	Cdc37	C	terminal	domain
HxlR	PF01638.12	gi|257053500|ref|YP_003131333.1|	-	0.093	12.3	0.0	0.12	12.0	0.0	1.3	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
DNase-RNase	PF02577.9	gi|257053501|ref|YP_003131334.1|	-	2e-37	127.4	0.0	2.4e-37	127.1	0.0	1.0	1	0	0	1	1	1	1	Bifunctional	nuclease
Arch_ATPase	PF01637.13	gi|257053502|ref|YP_003131335.1|	-	6.6e-34	117.6	0.0	9.6e-34	117.0	0.0	1.3	1	0	0	1	1	1	1	Archaeal	ATPase
DUF234	PF03008.9	gi|257053502|ref|YP_003131335.1|	-	4.4e-26	90.9	0.0	9.8e-26	89.8	0.0	1.6	1	0	0	1	1	1	1	Archaea	bacterial	proteins	of	unknown	function
AAA_14	PF13173.1	gi|257053502|ref|YP_003131335.1|	-	2.3e-09	37.2	0.0	4.9e-09	36.1	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|257053502|ref|YP_003131335.1|	-	2.8e-05	24.2	0.0	5.7e-05	23.2	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|257053502|ref|YP_003131335.1|	-	0.00013	22.0	0.0	0.00058	19.8	0.0	2.2	1	1	0	1	1	1	1	AAA	ATPase	domain
HTH_45	PF14947.1	gi|257053502|ref|YP_003131335.1|	-	0.014	15.2	0.0	0.033	14.0	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix
HTH_IclR	PF09339.5	gi|257053502|ref|YP_003131335.1|	-	0.019	14.5	0.0	0.04	13.5	0.0	1.5	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_5	PF01022.15	gi|257053502|ref|YP_003131335.1|	-	0.036	13.7	0.0	0.066	12.8	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.1	gi|257053502|ref|YP_003131335.1|	-	0.054	12.8	0.0	0.11	11.9	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
RNA12	PF10443.4	gi|257053502|ref|YP_003131335.1|	-	0.11	10.9	0.0	0.18	10.2	0.0	1.3	1	0	0	1	1	1	0	RNA12	protein
HTH_IclR	PF09339.5	gi|257053503|ref|YP_003131336.1|	-	0.0022	17.5	0.0	0.0051	16.3	0.0	1.6	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.1	gi|257053503|ref|YP_003131336.1|	-	0.011	15.0	0.0	0.025	13.9	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.2	gi|257053503|ref|YP_003131336.1|	-	0.051	13.2	0.0	0.12	12.0	0.0	1.5	1	0	0	1	1	1	0	MarR	family
DUF2789	PF10982.3	gi|257053503|ref|YP_003131336.1|	-	0.058	13.4	0.0	0.11	12.4	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2789)
FAD-oxidase_C	PF02913.14	gi|257053504|ref|YP_003131337.1|	-	3.6e-57	193.5	0.0	8.1e-57	192.3	0.0	1.6	1	0	0	1	1	1	1	FAD	linked	oxidases,	C-terminal	domain
FAD_binding_4	PF01565.18	gi|257053504|ref|YP_003131337.1|	-	6.5e-39	132.5	0.2	1.1e-38	131.7	0.2	1.4	1	0	0	1	1	1	1	FAD	binding	domain
CCG	PF02754.11	gi|257053504|ref|YP_003131337.1|	-	5.4e-08	32.7	0.0	2e-05	24.5	0.0	2.7	2	0	0	2	2	2	1	Cysteine-rich	domain
Fer4_17	PF13534.1	gi|257053504|ref|YP_003131337.1|	-	7.7e-08	32.5	3.6	1.6e-07	31.5	2.5	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|257053504|ref|YP_003131337.1|	-	1.5e-07	31.3	5.4	2.8e-07	30.4	3.7	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|257053504|ref|YP_003131337.1|	-	0.0007	19.9	0.5	0.0007	19.9	0.3	2.6	2	1	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|257053504|ref|YP_003131337.1|	-	0.00083	19.5	1.4	0.018	15.2	0.1	2.5	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.1	gi|257053504|ref|YP_003131337.1|	-	0.044	13.6	5.2	0.079	12.8	0.4	2.4	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Cytokin-bind	PF09265.5	gi|257053504|ref|YP_003131337.1|	-	0.13	11.4	0.0	0.21	10.6	0.0	1.2	1	0	0	1	1	1	0	Cytokinin	dehydrogenase	1,	FAD	and	cytokinin	binding
Fer4_10	PF13237.1	gi|257053504|ref|YP_003131337.1|	-	0.21	11.3	9.6	0.078	12.7	1.4	2.3	1	1	2	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|257053504|ref|YP_003131337.1|	-	0.22	11.9	8.5	1.1	9.6	1.5	2.5	1	1	2	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|257053504|ref|YP_003131337.1|	-	0.23	12.2	3.5	0.34	11.6	0.3	2.7	3	0	0	3	3	2	0	4Fe-4S	double	cluster	binding	domain
Fer4	PF00037.22	gi|257053504|ref|YP_003131337.1|	-	0.31	10.7	14.0	0.066	12.8	2.4	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_2	PF12797.2	gi|257053504|ref|YP_003131337.1|	-	0.55	10.2	8.8	0.35	10.8	1.3	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_15	PF13459.1	gi|257053504|ref|YP_003131337.1|	-	1.2	9.7	6.5	0.35	11.4	0.3	2.9	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
MatE	PF01554.13	gi|257053505|ref|YP_003131338.1|	-	8.9e-63	210.7	29.6	1.4e-31	109.2	8.7	2.4	2	0	0	2	2	2	2	MatE
MVIN	PF03023.9	gi|257053505|ref|YP_003131338.1|	-	2.1e-05	23.1	19.7	0.013	13.9	2.1	2.2	1	1	1	2	2	2	2	MviN-like	protein
Polysacc_synt_C	PF14667.1	gi|257053505|ref|YP_003131338.1|	-	0.00013	21.7	7.1	0.00013	21.7	4.9	5.1	4	3	0	4	4	4	2	Polysaccharide	biosynthesis	C-terminal	domain
Glyco_hydro_2_N	PF02837.13	gi|257053506|ref|YP_003131339.1|	-	2.4e-12	46.7	0.1	8.8e-12	44.8	0.1	2.0	1	1	0	1	1	1	1	Glycosyl	hydrolases	family	2,	sugar	binding	domain
Glyco_hydro_2	PF00703.16	gi|257053506|ref|YP_003131339.1|	-	2.2e-07	31.3	0.0	1.3e-06	28.7	0.0	2.2	2	0	0	2	2	2	1	Glycosyl	hydrolases	family	2
Glyco_hydro_2_C	PF02836.12	gi|257053506|ref|YP_003131339.1|	-	3e-06	26.3	0.0	5.4e-06	25.5	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	2,	TIM	barrel	domain
Usp	PF00582.21	gi|257053507|ref|YP_003131340.1|	-	3e-12	46.8	0.1	6.5e-12	45.8	0.1	1.5	1	1	0	1	1	1	1	Universal	stress	protein	family
NIF3	PF01784.13	gi|257053507|ref|YP_003131340.1|	-	0.0051	16.4	0.0	0.0066	16.0	0.0	1.1	1	0	0	1	1	1	1	NIF3	(NGG1p	interacting	factor	3)
AP_endonuc_2	PF01261.19	gi|257053507|ref|YP_003131340.1|	-	0.043	13.1	0.0	0.4	9.9	0.0	1.9	1	1	1	2	2	2	0	Xylose	isomerase-like	TIM	barrel
Acetyltransf_3	PF13302.1	gi|257053508|ref|YP_003131341.1|	-	3.6e-19	69.3	0.0	4.6e-19	68.9	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.1	gi|257053508|ref|YP_003131341.1|	-	2.3e-11	43.9	0.0	2.5e-11	43.7	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.19	gi|257053508|ref|YP_003131341.1|	-	4.5e-11	42.6	0.1	9.8e-11	41.5	0.0	1.6	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.1	gi|257053508|ref|YP_003131341.1|	-	2.5e-05	24.3	0.1	3.4e-05	23.9	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.1	gi|257053508|ref|YP_003131341.1|	-	3.8e-05	23.6	0.1	7.3e-05	22.6	0.1	1.4	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.1	gi|257053508|ref|YP_003131341.1|	-	0.0034	17.4	0.0	0.0098	16.0	0.0	1.9	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_6	PF13480.1	gi|257053508|ref|YP_003131341.1|	-	0.016	15.2	1.4	0.032	14.2	0.6	1.7	1	1	1	2	2	2	0	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|257053508|ref|YP_003131341.1|	-	0.033	13.9	0.0	0.051	13.3	0.0	1.3	1	0	0	1	1	1	0	FR47-like	protein
AP_endonuc_2	PF01261.19	gi|257053509|ref|YP_003131342.1|	-	2.8e-32	111.7	3.8	1.6e-30	106.0	1.1	1.9	1	1	1	2	2	2	2	Xylose	isomerase-like	TIM	barrel
HAMP	PF00672.20	gi|257053510|ref|YP_003131343.1|	-	7.8e-11	42.0	12.3	1.2e-08	34.9	0.2	4.3	4	1	1	5	5	5	2	HAMP	domain
MCPsignal	PF00015.16	gi|257053510|ref|YP_003131343.1|	-	0.00015	21.4	14.0	0.00015	21.4	9.7	3.3	2	1	1	3	3	3	1	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
Sec34	PF04136.10	gi|257053510|ref|YP_003131343.1|	-	0.0016	18.1	5.0	0.43	10.2	0.2	2.4	1	1	1	2	2	2	2	Sec34-like	family
DUF4097	PF13349.1	gi|257053510|ref|YP_003131343.1|	-	0.0021	17.6	0.1	0.23	11.0	0.0	2.5	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4097)
T4SS	PF07996.6	gi|257053510|ref|YP_003131343.1|	-	0.015	15.2	6.0	0.043	13.6	4.1	1.8	1	0	0	1	1	1	0	Type	IV	secretion	system	proteins
NPV_P10	PF05531.7	gi|257053510|ref|YP_003131343.1|	-	0.024	14.8	4.3	1.5	9.1	1.2	3.6	1	1	1	2	2	2	0	Nucleopolyhedrovirus	P10	protein
DUF948	PF06103.6	gi|257053510|ref|YP_003131343.1|	-	0.034	13.9	7.0	1.8	8.4	0.5	4.1	1	1	3	4	4	4	0	Bacterial	protein	of	unknown	function	(DUF948)
DUF3185	PF11381.3	gi|257053510|ref|YP_003131343.1|	-	0.035	13.8	1.8	2	8.2	0.0	3.1	3	0	0	3	3	2	0	Protein	of	unknown	function	(DUF3185)
AAA_13	PF13166.1	gi|257053510|ref|YP_003131343.1|	-	0.076	11.4	10.9	0.13	10.6	7.6	1.4	1	0	0	1	1	1	0	AAA	domain
DUF1664	PF07889.7	gi|257053510|ref|YP_003131343.1|	-	0.18	11.6	9.4	0.03	14.1	1.0	3.1	1	1	1	3	3	3	0	Protein	of	unknown	function	(DUF1664)
Corona_S2	PF01601.11	gi|257053510|ref|YP_003131343.1|	-	0.19	9.8	0.5	0.3	9.1	0.4	1.2	1	0	0	1	1	1	0	Coronavirus	S2	glycoprotein
RmuC	PF02646.11	gi|257053510|ref|YP_003131343.1|	-	0.34	9.6	9.1	0.52	9.1	1.3	3.2	2	1	1	3	3	3	0	RmuC	family
Sec8_exocyst	PF04048.9	gi|257053510|ref|YP_003131343.1|	-	0.37	10.4	6.2	0.16	11.5	1.7	2.4	2	1	1	3	3	3	0	Sec8	exocyst	complex	component	specific	domain
Seryl_tRNA_N	PF02403.17	gi|257053510|ref|YP_003131343.1|	-	0.5	10.4	16.5	0.78	9.7	3.3	3.6	3	1	0	3	3	3	0	Seryl-tRNA	synthetase	N-terminal	domain
Zw10	PF06248.8	gi|257053510|ref|YP_003131343.1|	-	0.57	8.2	6.5	0.51	8.4	3.7	1.4	1	1	0	1	1	1	0	Centromere/kinetochore	Zw10
Streptin-Immun	PF11083.3	gi|257053510|ref|YP_003131343.1|	-	0.93	9.5	5.0	8.1	6.5	0.1	3.2	3	1	0	3	3	2	0	Lantibiotic	streptin	immunity	protein
CorA	PF01544.13	gi|257053510|ref|YP_003131343.1|	-	0.95	8.4	15.8	1.8	7.5	0.0	3.2	1	1	1	3	3	3	0	CorA-like	Mg2+	transporter	protein
Mt_ATP-synt_D	PF05873.7	gi|257053510|ref|YP_003131343.1|	-	1.2	8.7	6.7	1.5	8.4	1.3	2.8	1	1	2	3	3	3	0	ATP	synthase	D	chain,	mitochondrial	(ATP5H)
Allexi_40kDa	PF05549.6	gi|257053510|ref|YP_003131343.1|	-	1.3	8.2	5.0	0.3	10.3	0.9	1.8	2	0	0	2	2	2	0	Allexivirus	40kDa	protein
Prominin	PF05478.6	gi|257053510|ref|YP_003131343.1|	-	1.3	6.4	3.5	0.98	6.8	1.1	1.5	1	1	0	1	1	1	0	Prominin
ISG65-75	PF11727.3	gi|257053510|ref|YP_003131343.1|	-	3.3	6.7	19.0	1.8	7.5	3.5	3.1	1	1	2	3	3	3	0	Invariant	surface	glycoprotein
WXG100	PF06013.7	gi|257053510|ref|YP_003131343.1|	-	4.7	7.2	23.7	0.27	11.2	0.2	5.4	5	2	2	7	7	7	0	Proteins	of	100	residues	with	WXG
V_ATPase_I	PF01496.14	gi|257053510|ref|YP_003131343.1|	-	4.9	4.8	13.2	36	2.0	9.2	2.0	1	1	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
Laminin_II	PF06009.7	gi|257053510|ref|YP_003131343.1|	-	6.3	6.5	17.1	0.71	9.6	0.3	4.0	3	1	1	4	4	3	0	Laminin	Domain	II
DUF3347	PF11827.3	gi|257053510|ref|YP_003131343.1|	-	9.3	6.2	14.0	0.24	11.4	1.6	2.7	2	1	2	4	4	3	0	Protein	of	unknown	function	(DUF3347)
HAMP	PF00672.20	gi|257053511|ref|YP_003131344.1|	-	1.2e-09	38.1	13.5	1.2e-07	31.8	0.2	4.1	4	1	0	4	4	4	2	HAMP	domain
MCPsignal	PF00015.16	gi|257053511|ref|YP_003131344.1|	-	0.0021	17.6	24.5	0.0045	16.5	8.5	3.0	1	1	2	3	3	3	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
Sec34	PF04136.10	gi|257053511|ref|YP_003131344.1|	-	0.0037	16.9	7.6	0.01	15.5	2.0	2.9	1	1	1	2	2	2	2	Sec34-like	family
DUF4097	PF13349.1	gi|257053511|ref|YP_003131344.1|	-	0.0088	15.5	0.1	0.71	9.4	0.0	2.4	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4097)
IncA	PF04156.9	gi|257053511|ref|YP_003131344.1|	-	0.01	15.4	26.1	0.5	9.9	6.3	3.4	2	1	1	3	3	3	0	IncA	protein
DUF3185	PF11381.3	gi|257053511|ref|YP_003131344.1|	-	0.046	13.4	3.6	0.15	11.8	0.1	3.0	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3185)
NPV_P10	PF05531.7	gi|257053511|ref|YP_003131344.1|	-	0.048	13.9	5.5	3.7	7.8	2.5	3.5	1	1	1	2	2	2	0	Nucleopolyhedrovirus	P10	protein
AAA_13	PF13166.1	gi|257053511|ref|YP_003131344.1|	-	0.074	11.5	13.3	0.07	11.5	8.1	1.5	1	1	0	1	1	1	0	AAA	domain
DUF948	PF06103.6	gi|257053511|ref|YP_003131344.1|	-	0.11	12.3	12.4	0.11	12.3	0.3	4.1	2	1	2	5	5	5	0	Bacterial	protein	of	unknown	function	(DUF948)
WXG100	PF06013.7	gi|257053511|ref|YP_003131344.1|	-	0.25	11.3	0.1	0.25	11.3	0.1	5.8	5	2	1	6	6	5	0	Proteins	of	100	residues	with	WXG
RmuC	PF02646.11	gi|257053511|ref|YP_003131344.1|	-	0.45	9.3	9.3	0.4	9.4	1.3	3.2	2	1	1	3	3	3	0	RmuC	family
Sec8_exocyst	PF04048.9	gi|257053511|ref|YP_003131344.1|	-	0.58	9.7	7.1	0.25	10.9	2.3	2.2	2	1	1	3	3	3	0	Sec8	exocyst	complex	component	specific	domain
Prominin	PF05478.6	gi|257053511|ref|YP_003131344.1|	-	0.78	7.2	4.4	1.3	6.5	1.8	1.9	2	1	0	2	2	2	0	Prominin
Laminin_II	PF06009.7	gi|257053511|ref|YP_003131344.1|	-	0.89	9.3	16.7	0.66	9.7	0.4	3.6	3	1	1	4	4	4	0	Laminin	Domain	II
DUF1664	PF07889.7	gi|257053511|ref|YP_003131344.1|	-	1.1	9.0	10.7	0.12	12.1	0.6	3.3	1	1	3	4	4	4	0	Protein	of	unknown	function	(DUF1664)
DUF3347	PF11827.3	gi|257053511|ref|YP_003131344.1|	-	2.1	8.3	13.3	0.061	13.3	1.9	2.7	2	1	1	3	3	2	0	Protein	of	unknown	function	(DUF3347)
Hemagglutinin	PF00509.13	gi|257053511|ref|YP_003131344.1|	-	2.7	6.0	6.2	2.6	6.0	0.9	2.5	1	1	2	3	3	3	0	Haemagglutinin
Effector_1	PF04518.7	gi|257053511|ref|YP_003131344.1|	-	3	6.7	11.7	0.084	11.8	1.7	2.4	1	1	1	2	2	2	0	Effector	from	type	III	secretion	system
Mt_ATP-synt_D	PF05873.7	gi|257053511|ref|YP_003131344.1|	-	4	7.0	7.6	11	5.5	0.2	3.2	2	1	2	4	4	3	0	ATP	synthase	D	chain,	mitochondrial	(ATP5H)
CitG	PF01874.11	gi|257053511|ref|YP_003131344.1|	-	6.4	5.8	9.8	4.9	6.2	2.8	2.9	2	1	0	2	2	2	0	ATP:dephospho-CoA	triphosphoribosyl	transferase
CorA	PF01544.13	gi|257053511|ref|YP_003131344.1|	-	7.2	5.5	18.1	2.4	7.1	0.1	3.3	1	1	1	3	3	3	0	CorA-like	Mg2+	transporter	protein
V_ATPase_I	PF01496.14	gi|257053511|ref|YP_003131344.1|	-	9.6	3.9	15.9	86	0.7	11.1	2.0	1	1	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
FGGY_N	PF00370.16	gi|257053512|ref|YP_003131345.1|	-	9.9e-84	280.4	0.0	1.3e-83	280.1	0.0	1.1	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	N-terminal	domain
FGGY_C	PF02782.11	gi|257053512|ref|YP_003131345.1|	-	4.2e-37	127.6	0.0	7e-37	126.9	0.0	1.3	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	C-terminal	domain
BcrAD_BadFG	PF01869.15	gi|257053512|ref|YP_003131345.1|	-	0.017	14.4	0.0	0.11	11.7	0.0	2.1	2	0	0	2	2	2	0	BadF/BadG/BcrA/BcrD	ATPase	family
DNA_pol_B_thumb	PF14791.1	gi|257053513|ref|YP_003131346.1|	-	7.4e-27	92.8	0.0	2.4e-26	91.2	0.0	2.0	1	0	0	1	1	1	1	DNA	polymerase	beta	thumb
HHH_5	PF14520.1	gi|257053513|ref|YP_003131346.1|	-	2.1e-19	69.4	10.7	4e-12	46.1	0.2	3.7	4	1	0	4	4	4	2	Helix-hairpin-helix	domain
HHH_8	PF14716.1	gi|257053513|ref|YP_003131346.1|	-	2.7e-17	62.6	5.1	2.7e-14	53.0	0.5	4.6	3	1	1	4	4	4	1	Helix-hairpin-helix	domain
PHP	PF02811.14	gi|257053513|ref|YP_003131346.1|	-	2.2e-14	53.6	0.0	9.7e-14	51.5	0.0	2.1	1	1	0	1	1	1	1	PHP	domain
HHH_2	PF12826.2	gi|257053513|ref|YP_003131346.1|	-	4.6e-07	29.6	1.8	0.0017	18.1	0.1	3.0	1	1	2	3	3	3	2	Helix-hairpin-helix	motif
DNA_pol_lambd_f	PF10391.4	gi|257053513|ref|YP_003131346.1|	-	5.1e-05	22.7	0.1	0.00093	18.6	0.0	2.8	2	1	1	3	3	3	1	Fingers	domain	of	DNA	polymerase	lambda
DNA_pol_B_palm	PF14792.1	gi|257053513|ref|YP_003131346.1|	-	0.00068	19.6	0.0	0.0016	18.5	0.0	1.7	1	0	0	1	1	1	1	DNA	polymerase	beta	palm
HHH	PF00633.18	gi|257053513|ref|YP_003131346.1|	-	0.0011	18.5	0.6	0.011	15.3	0.1	2.9	2	1	0	2	2	2	1	Helix-hairpin-helix	motif
HHH_3	PF12836.2	gi|257053513|ref|YP_003131346.1|	-	0.011	15.6	0.0	8.1	6.4	0.0	3.3	3	0	0	3	3	3	0	Helix-hairpin-helix	motif
DUF2346	PF09803.4	gi|257053514|ref|YP_003131347.1|	-	0.048	13.5	0.3	0.1	12.4	0.2	1.5	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2346)
GvpK	PF05121.7	gi|257053514|ref|YP_003131347.1|	-	0.1	12.3	0.7	0.17	11.6	0.5	1.4	1	0	0	1	1	1	0	Gas	vesicle	protein	K
Glyco_hydro_43	PF04616.9	gi|257053515|ref|YP_003131348.1|	-	4.9e-53	180.0	4.3	9e-53	179.2	3.0	1.4	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	43
RicinB_lectin_2	PF14200.1	gi|257053515|ref|YP_003131348.1|	-	4.5e-41	139.4	13.5	3.1e-22	78.9	3.9	2.6	1	1	1	2	2	2	2	Ricin-type	beta-trefoil	lectin	domain-like
Ricin_B_lectin	PF00652.17	gi|257053515|ref|YP_003131348.1|	-	3.7e-14	52.8	2.9	6.3e-14	52.0	2.0	1.4	1	0	0	1	1	1	1	Ricin-type	beta-trefoil	lectin	domain
Filamin	PF00630.14	gi|257053515|ref|YP_003131348.1|	-	0.032	14.7	0.0	1.8	9.1	0.0	2.6	1	1	1	2	2	2	0	Filamin/ABP280	repeat
TAT_signal	PF10518.4	gi|257053515|ref|YP_003131348.1|	-	0.088	12.8	1.0	0.28	11.2	0.7	1.9	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Asparaginase_II	PF06089.7	gi|257053515|ref|YP_003131348.1|	-	0.22	10.1	0.0	12	4.4	0.0	2.1	1	1	1	2	2	2	0	L-asparaginase	II
RicinB_lectin_2	PF14200.1	gi|257053516|ref|YP_003131349.1|	-	3.8e-47	159.0	12.2	1.4e-26	92.8	2.4	2.9	1	1	1	2	2	2	2	Ricin-type	beta-trefoil	lectin	domain-like
Beta_helix	PF13229.1	gi|257053516|ref|YP_003131349.1|	-	1.7e-17	63.6	39.4	7.4e-12	45.2	13.9	3.1	2	1	1	3	3	3	2	Right	handed	beta	helix	region
Ricin_B_lectin	PF00652.17	gi|257053516|ref|YP_003131349.1|	-	4.1e-14	52.6	5.5	1.4e-13	50.9	3.1	2.5	2	1	0	2	2	2	1	Ricin-type	beta-trefoil	lectin	domain
CD34_antigen	PF06365.7	gi|257053516|ref|YP_003131349.1|	-	0.13	11.9	0.1	0.25	10.9	0.1	1.5	1	0	0	1	1	1	0	CD34/Podocalyxin	family
Rhomboid	PF01694.17	gi|257053517|ref|YP_003131350.1|	-	2.6e-27	95.6	14.6	2.6e-27	95.6	10.1	1.6	2	0	0	2	2	2	1	Rhomboid	family
zf-AN1	PF01428.11	gi|257053517|ref|YP_003131350.1|	-	4.6e-14	52.0	6.1	6.2e-14	51.5	4.2	1.2	1	0	0	1	1	1	1	AN1-like	Zinc	finger
FYVE	PF01363.16	gi|257053517|ref|YP_003131350.1|	-	0.0062	16.4	1.3	0.0082	16.0	0.9	1.2	1	0	0	1	1	1	1	FYVE	zinc	finger
DUF1751	PF08551.5	gi|257053517|ref|YP_003131350.1|	-	0.0082	16.4	0.1	0.0082	16.4	0.1	2.2	3	0	0	3	3	3	1	Eukaryotic	integral	membrane	protein	(DUF1751)
zf-HIT	PF04438.11	gi|257053517|ref|YP_003131350.1|	-	0.18	11.5	3.4	0.25	11.0	2.3	1.2	1	0	0	1	1	1	0	HIT	zinc	finger
C1_3	PF07649.7	gi|257053517|ref|YP_003131350.1|	-	0.21	11.6	6.3	0.36	10.9	4.4	1.4	1	0	0	1	1	1	0	C1-like	domain
C1_2	PF03107.11	gi|257053517|ref|YP_003131350.1|	-	1.8	8.7	5.2	2.8	8.1	3.6	1.3	1	0	0	1	1	1	0	C1	domain
Endonuclease_5	PF04493.9	gi|257053518|ref|YP_003131351.1|	-	4.6e-46	156.7	0.0	6e-46	156.3	0.0	1.1	1	0	0	1	1	1	1	Endonuclease	V
adh_short	PF00106.20	gi|257053519|ref|YP_003131352.1|	-	3e-35	121.5	1.0	6.6e-35	120.4	0.3	1.7	1	1	1	2	2	2	1	short	chain	dehydrogenase
adh_short_C2	PF13561.1	gi|257053519|ref|YP_003131352.1|	-	8.1e-19	68.3	0.0	1.1e-18	67.9	0.0	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.5	gi|257053519|ref|YP_003131352.1|	-	3.4e-13	49.6	0.2	5.8e-13	48.9	0.1	1.4	1	0	0	1	1	1	1	KR	domain
DUF1776	PF08643.5	gi|257053519|ref|YP_003131352.1|	-	2.4e-09	36.7	0.0	3.2e-09	36.3	0.0	1.1	1	0	0	1	1	1	1	Fungal	family	of	unknown	function	(DUF1776)
NAD_binding_10	PF13460.1	gi|257053519|ref|YP_003131352.1|	-	4.6e-07	30.0	1.2	7.2e-07	29.3	0.8	1.3	1	0	0	1	1	1	1	NADH(P)-binding
Epimerase	PF01370.16	gi|257053519|ref|YP_003131352.1|	-	1.5e-06	27.8	0.0	2.6e-05	23.7	0.0	2.3	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
RmlD_sub_bind	PF04321.12	gi|257053519|ref|YP_003131352.1|	-	0.022	13.6	0.2	0.051	12.4	0.0	1.7	2	0	0	2	2	2	0	RmlD	substrate	binding	domain
NmrA	PF05368.8	gi|257053519|ref|YP_003131352.1|	-	0.031	13.5	0.0	0.052	12.8	0.0	1.3	1	0	0	1	1	1	0	NmrA-like	family
Eno-Rase_NADH_b	PF12242.3	gi|257053519|ref|YP_003131352.1|	-	0.034	13.9	0.1	0.078	12.7	0.0	1.5	1	0	0	1	1	1	0	NAD(P)H	binding	domain	of	trans-2-enoyl-CoA	reductase
DUF4147	PF13660.1	gi|257053520|ref|YP_003131353.1|	-	3.3e-79	265.3	0.8	5.3e-79	264.7	0.5	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4147)
MOFRL	PF05161.8	gi|257053520|ref|YP_003131353.1|	-	1.2e-26	92.9	1.5	2.6e-26	91.8	1.1	1.6	1	0	0	1	1	1	1	MOFRL	family
CMD	PF02627.15	gi|257053520|ref|YP_003131353.1|	-	0.015	15.1	0.2	0.073	12.9	0.1	2.2	1	0	0	1	1	1	0	Carboxymuconolactone	decarboxylase	family
TrmB	PF01978.14	gi|257053521|ref|YP_003131354.1|	-	4.5e-07	29.4	0.1	9.4e-07	28.4	0.1	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.2	gi|257053521|ref|YP_003131354.1|	-	0.0052	16.5	0.2	0.02	14.6	0.0	2.0	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|257053521|ref|YP_003131354.1|	-	0.035	13.6	0.0	0.1	12.2	0.0	1.8	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
PSK_trans_fac	PF07704.6	gi|257053522|ref|YP_003131355.1|	-	0.0088	16.7	1.6	0.035	14.7	1.1	1.9	1	1	0	1	1	1	1	Rv0623-like	transcription	factor
Lipase_chap	PF03280.9	gi|257053522|ref|YP_003131355.1|	-	0.021	14.3	0.8	0.022	14.3	0.5	1.2	1	0	0	1	1	1	0	Proteobacterial	lipase	chaperone	protein
PIN_4	PF13638.1	gi|257053523|ref|YP_003131356.1|	-	0.095	12.7	0.0	0.12	12.4	0.0	1.3	1	0	0	1	1	1	0	PIN	domain
adh_short	PF00106.20	gi|257053524|ref|YP_003131357.1|	-	7.8e-25	87.7	0.4	1.5e-24	86.7	0.2	1.4	1	1	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.5	gi|257053524|ref|YP_003131357.1|	-	1.2e-07	31.5	0.2	4.5e-05	23.1	0.0	2.0	2	0	0	2	2	2	2	KR	domain
adh_short_C2	PF13561.1	gi|257053524|ref|YP_003131357.1|	-	3.5e-07	30.2	0.0	4.6e-07	29.8	0.0	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
NAD_binding_10	PF13460.1	gi|257053524|ref|YP_003131357.1|	-	6.2e-07	29.5	0.7	1.2e-06	28.6	0.5	1.5	1	1	0	1	1	1	1	NADH(P)-binding
Epimerase	PF01370.16	gi|257053524|ref|YP_003131357.1|	-	0.0008	18.9	0.0	0.0013	18.1	0.0	1.3	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
ArsA_ATPase	PF02374.10	gi|257053525|ref|YP_003131358.1|	-	1.9e-79	266.8	0.0	2.5e-79	266.5	0.0	1.2	1	0	0	1	1	1	1	Anion-transporting	ATPase
CbiA	PF01656.18	gi|257053525|ref|YP_003131358.1|	-	8.8e-12	44.8	0.1	7.7e-11	41.7	0.1	2.1	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.1	gi|257053525|ref|YP_003131358.1|	-	2.4e-06	27.5	0.5	0.00058	19.8	0.0	2.7	3	0	0	3	3	3	1	AAA	domain
SRP54	PF00448.17	gi|257053525|ref|YP_003131358.1|	-	0.002	17.6	0.4	0.23	10.8	0.2	2.3	2	0	0	2	2	2	1	SRP54-type	protein,	GTPase	domain
AAA_25	PF13481.1	gi|257053525|ref|YP_003131358.1|	-	0.0026	17.1	4.2	0.0057	16.0	1.3	2.6	1	1	0	2	2	2	1	AAA	domain
KaiC	PF06745.8	gi|257053525|ref|YP_003131358.1|	-	0.0048	16.0	0.0	0.0095	15.0	0.0	1.4	1	0	0	1	1	1	1	KaiC
AAA_10	PF12846.2	gi|257053525|ref|YP_003131358.1|	-	0.0051	16.3	0.2	0.0091	15.4	0.1	1.5	1	1	0	1	1	1	1	AAA-like	domain
PhoH	PF02562.11	gi|257053525|ref|YP_003131358.1|	-	0.0085	15.3	0.0	0.014	14.5	0.0	1.3	1	0	0	1	1	1	1	PhoH-like	protein
Fer4_NifH	PF00142.13	gi|257053525|ref|YP_003131358.1|	-	0.014	14.5	0.0	0.026	13.6	0.0	1.3	1	0	0	1	1	1	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
IstB_IS21	PF01695.12	gi|257053525|ref|YP_003131358.1|	-	0.019	14.4	0.0	0.032	13.6	0.0	1.3	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
YhjQ	PF06564.7	gi|257053525|ref|YP_003131358.1|	-	0.037	13.3	0.0	0.071	12.4	0.0	1.4	1	0	0	1	1	1	0	YhjQ	protein
AAA_19	PF13245.1	gi|257053525|ref|YP_003131358.1|	-	0.045	13.5	0.7	5.7	6.7	0.4	2.5	2	0	0	2	2	2	0	Part	of	AAA	domain
Beta_propel	PF09826.4	gi|257053526|ref|YP_003131359.1|	-	8e-106	354.4	0.0	2.8e-104	349.3	0.0	2.1	1	1	0	1	1	1	1	Beta	propeller	domain
LVIVD	PF08309.6	gi|257053526|ref|YP_003131359.1|	-	6e-06	25.1	0.2	1.1	8.2	0.0	4.5	4	0	0	4	4	4	3	LVIVD	repeat
VirE1	PF12189.3	gi|257053527|ref|YP_003131360.1|	-	0.031	14.3	0.1	0.036	14.1	0.1	1.1	1	0	0	1	1	1	0	Single-strand	DNA-binding	protein
Helicase_C_2	PF13307.1	gi|257053529|ref|YP_003131362.1|	-	1.2e-24	87.1	0.0	2e-24	86.4	0.0	1.3	1	0	0	1	1	1	1	Helicase	C-terminal	domain
DEAD_2	PF06733.10	gi|257053529|ref|YP_003131362.1|	-	4e-11	42.6	0.0	1.5e-08	34.2	0.0	2.1	2	0	0	2	2	2	2	DEAD_2
DEAD	PF00270.24	gi|257053529|ref|YP_003131362.1|	-	9.8e-10	38.1	0.0	5e-05	22.8	0.0	2.4	2	0	0	2	2	2	2	DEAD/DEAH	box	helicase
PhoH	PF02562.11	gi|257053529|ref|YP_003131362.1|	-	3.8e-07	29.5	0.2	4.3e-05	22.8	0.0	2.2	2	0	0	2	2	2	1	PhoH-like	protein
ResIII	PF04851.10	gi|257053529|ref|YP_003131362.1|	-	4.1e-07	30.0	0.0	0.00067	19.5	0.0	2.2	2	0	0	2	2	2	2	Type	III	restriction	enzyme,	res	subunit
AAA_19	PF13245.1	gi|257053529|ref|YP_003131362.1|	-	4.4e-06	26.3	2.2	7.9e-06	25.5	0.3	2.3	2	0	0	2	2	2	1	Part	of	AAA	domain
AAA_30	PF13604.1	gi|257053529|ref|YP_003131362.1|	-	3.3e-05	23.5	2.5	0.0019	17.8	0.2	3.0	2	1	0	2	2	2	1	AAA	domain
AAA_22	PF13401.1	gi|257053529|ref|YP_003131362.1|	-	0.002	18.2	0.1	1.5	8.9	0.0	2.7	2	1	0	2	2	2	2	AAA	domain
AAA_17	PF13207.1	gi|257053529|ref|YP_003131362.1|	-	0.082	13.7	2.2	22	5.9	1.2	3.1	3	0	0	3	3	3	0	AAA	domain
DUF2075	PF09848.4	gi|257053529|ref|YP_003131362.1|	-	0.085	11.8	0.1	9.4	5.0	0.0	2.2	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
Mg_chelatase	PF01078.16	gi|257053529|ref|YP_003131362.1|	-	0.093	11.8	0.0	0.2	10.8	0.0	1.5	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
SNF2_N	PF00176.18	gi|257053529|ref|YP_003131362.1|	-	0.098	11.4	0.0	0.96	8.1	0.0	2.0	2	0	0	2	2	2	0	SNF2	family	N-terminal	domain
DUF1253	PF06862.7	gi|257053529|ref|YP_003131362.1|	-	0.23	9.8	0.0	0.68	8.2	0.0	1.7	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1253)
AAA_11	PF13086.1	gi|257053529|ref|YP_003131362.1|	-	0.24	10.9	0.0	0.73	9.3	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
APH	PF01636.18	gi|257053530|ref|YP_003131363.1|	-	1.9e-23	83.4	1.1	3e-23	82.7	0.7	1.2	1	0	0	1	1	1	1	Phosphotransferase	enzyme	family
Fructosamin_kin	PF03881.9	gi|257053530|ref|YP_003131363.1|	-	0.0012	17.9	0.0	0.0033	16.4	0.0	1.5	1	1	0	1	1	1	1	Fructosamine	kinase
CinA	PF02464.12	gi|257053531|ref|YP_003131364.1|	-	2.8e-57	192.5	0.1	3.2e-57	192.3	0.1	1.0	1	0	0	1	1	1	1	Competence-damaged	protein
DUF457	PF04307.9	gi|257053532|ref|YP_003131365.1|	-	1.1e-17	63.8	2.4	1.4e-17	63.4	1.7	1.2	1	0	0	1	1	1	1	Predicted	membrane-bound	metal-dependent	hydrolase	(DUF457)
Zn_dep_PLPC	PF00882.13	gi|257053532|ref|YP_003131365.1|	-	0.026	14.1	0.1	0.041	13.5	0.1	1.3	1	0	0	1	1	1	0	Zinc	dependent	phospholipase	C
PHP_C	PF13263.1	gi|257053533|ref|YP_003131366.1|	-	8.5e-16	57.2	0.1	1.7e-15	56.2	0.0	1.5	1	0	0	1	1	1	1	PHP-associated
zf-C2H2	PF00096.21	gi|257053534|ref|YP_003131367.1|	-	9.2e-05	22.5	0.0	0.017	15.4	0.0	2.5	2	0	0	2	2	2	2	Zinc	finger,	C2H2	type
zf-C2H2_4	PF13894.1	gi|257053534|ref|YP_003131367.1|	-	0.0028	17.8	0.0	0.13	12.6	0.0	2.4	2	0	0	2	2	2	1	C2H2-type	zinc	finger
Acetyltransf_1	PF00583.19	gi|257053535|ref|YP_003131368.1|	-	2.1e-08	34.0	0.0	3.3e-08	33.4	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_CG	PF14542.1	gi|257053535|ref|YP_003131368.1|	-	0.00026	20.8	0.0	0.00043	20.1	0.0	1.3	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Acetyltransf_7	PF13508.1	gi|257053535|ref|YP_003131368.1|	-	0.00096	19.2	0.0	0.0013	18.7	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.1	gi|257053535|ref|YP_003131368.1|	-	0.0071	16.4	0.0	0.0099	15.9	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.1	gi|257053535|ref|YP_003131368.1|	-	0.026	14.6	0.1	0.092	12.9	0.1	1.8	1	1	1	2	2	2	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.1	gi|257053535|ref|YP_003131368.1|	-	0.14	12.0	0.0	0.24	11.2	0.0	1.4	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
ThiC	PF01964.13	gi|257053536|ref|YP_003131369.1|	-	2.4e-192	639.1	0.0	2.7e-192	638.9	0.0	1.0	1	0	0	1	1	1	1	ThiC	family
zinc_ribbon_2	PF13240.1	gi|257053536|ref|YP_003131369.1|	-	0.18	11.3	0.1	0.33	10.4	0.1	1.5	1	0	0	1	1	1	0	zinc-ribbon	domain
PIN	PF01850.16	gi|257053537|ref|YP_003131370.1|	-	6.9e-16	58.6	3.4	7.7e-16	58.5	2.4	1.0	1	0	0	1	1	1	1	PIN	domain
Antitoxin-MazE	PF04014.13	gi|257053538|ref|YP_003131371.1|	-	6.5e-05	22.5	0.0	0.0001	21.8	0.0	1.4	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
Inhibitor_I53	PF11714.3	gi|257053538|ref|YP_003131371.1|	-	0.013	15.4	0.9	0.028	14.4	0.5	1.7	1	1	1	2	2	2	0	Thrombin	inhibitor	Madanin
DUF2237	PF09996.4	gi|257053539|ref|YP_003131372.1|	-	7.4e-50	167.3	0.0	8.8e-50	167.0	0.0	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2237)
tRNA_deacylase	PF04414.7	gi|257053540|ref|YP_003131373.1|	-	4.4e-61	205.7	0.0	6e-61	205.2	0.0	1.1	1	0	0	1	1	1	1	D-aminoacyl-tRNA	deacylase
Na_Ca_ex	PF01699.19	gi|257053541|ref|YP_003131374.1|	-	4.3e-16	58.7	21.3	1.4e-08	34.4	3.3	2.7	3	0	0	3	3	3	2	Sodium/calcium	exchanger	protein
SPC25	PF06703.6	gi|257053541|ref|YP_003131374.1|	-	0.6	9.6	3.7	0.86	9.1	0.4	2.7	3	0	0	3	3	3	0	Microsomal	signal	peptidase	25	kDa	subunit	(SPC25)
Shikimate_dh_N	PF08501.6	gi|257053542|ref|YP_003131375.1|	-	1.5e-26	92.2	0.0	4e-26	90.8	0.0	1.7	2	0	0	2	2	2	1	Shikimate	dehydrogenase	substrate	binding	domain
Shikimate_DH	PF01488.15	gi|257053542|ref|YP_003131375.1|	-	2.2e-14	53.7	0.1	3.8e-14	52.9	0.1	1.4	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
Saccharop_dh	PF03435.13	gi|257053542|ref|YP_003131375.1|	-	4.6e-05	22.5	1.2	6.5e-05	22.0	0.8	1.2	1	0	0	1	1	1	1	Saccharopine	dehydrogenase
F420_oxidored	PF03807.12	gi|257053542|ref|YP_003131375.1|	-	0.00022	21.6	0.4	0.00057	20.2	0.3	1.7	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
2-Hacid_dh_C	PF02826.14	gi|257053542|ref|YP_003131375.1|	-	0.00027	20.1	0.1	0.00043	19.4	0.0	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_10	PF13460.1	gi|257053542|ref|YP_003131375.1|	-	0.0003	20.8	2.1	0.0003	20.8	1.5	2.0	2	1	0	2	2	2	1	NADH(P)-binding
IlvN	PF07991.7	gi|257053542|ref|YP_003131375.1|	-	0.00068	19.0	0.3	0.0017	17.7	0.1	1.7	2	0	0	2	2	2	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
DAO	PF01266.19	gi|257053542|ref|YP_003131375.1|	-	0.00077	18.4	1.2	0.0012	17.7	0.9	1.4	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.19	gi|257053542|ref|YP_003131375.1|	-	0.0031	16.4	2.1	0.0054	15.6	1.5	1.5	1	0	0	1	1	1	1	FAD	binding	domain
NAD_binding_2	PF03446.10	gi|257053542|ref|YP_003131375.1|	-	0.011	15.5	0.1	0.019	14.7	0.1	1.6	1	0	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Pyr_redox_2	PF07992.9	gi|257053542|ref|YP_003131375.1|	-	0.015	15.1	0.2	0.024	14.5	0.1	1.4	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.13	gi|257053542|ref|YP_003131375.1|	-	0.022	14.4	1.0	0.036	13.7	0.7	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_Gly3P_dh_N	PF01210.18	gi|257053542|ref|YP_003131375.1|	-	0.056	13.1	0.2	0.1	12.3	0.1	1.5	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
AP_endonuc_2	PF01261.19	gi|257053542|ref|YP_003131375.1|	-	0.069	12.4	1.1	0.21	10.8	0.0	2.3	2	1	1	3	3	3	0	Xylose	isomerase-like	TIM	barrel
ApbA	PF02558.11	gi|257053542|ref|YP_003131375.1|	-	0.094	12.1	0.7	0.16	11.3	0.5	1.4	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
GIDA	PF01134.17	gi|257053542|ref|YP_003131375.1|	-	0.44	9.3	2.3	0.57	8.9	1.6	1.1	1	0	0	1	1	1	0	Glucose	inhibited	division	protein	A
HHH_5	PF14520.1	gi|257053543|ref|YP_003131376.1|	-	6.3e-09	35.8	0.7	1.1e-08	35.0	0.5	1.4	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
DUF4332	PF14229.1	gi|257053543|ref|YP_003131376.1|	-	0.0031	17.4	0.1	0.025	14.5	0.0	1.9	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4332)
Cdd1	PF11731.3	gi|257053543|ref|YP_003131376.1|	-	0.0062	16.4	0.0	0.0091	15.9	0.0	1.3	1	0	0	1	1	1	1	Pathogenicity	locus
DNA_pol_lambd_f	PF10391.4	gi|257053543|ref|YP_003131376.1|	-	0.067	12.7	0.0	0.12	11.9	0.0	1.4	1	0	0	1	1	1	0	Fingers	domain	of	DNA	polymerase	lambda
SDA1	PF05285.7	gi|257053543|ref|YP_003131376.1|	-	5.5	6.1	17.1	6.7	5.8	11.9	1.2	1	0	0	1	1	1	0	SDA1
DUF966	PF06136.8	gi|257053543|ref|YP_003131376.1|	-	6	6.1	8.8	7.1	5.9	6.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF966)
BUD22	PF09073.5	gi|257053543|ref|YP_003131376.1|	-	8.6	5.3	20.0	10	5.0	13.9	1.1	1	0	0	1	1	1	0	BUD22
Chorismate_bind	PF00425.13	gi|257053544|ref|YP_003131377.1|	-	5.7e-97	324.0	0.0	8.1e-97	323.5	0.0	1.2	1	0	0	1	1	1	1	chorismate	binding	enzyme
Anth_synt_I_N	PF04715.8	gi|257053544|ref|YP_003131377.1|	-	4.6e-15	55.8	0.0	1.8e-14	53.9	0.0	2.1	2	0	0	2	2	2	1	Anthranilate	synthase	component	I,	N	terminal	region
GATase	PF00117.23	gi|257053545|ref|YP_003131378.1|	-	9.9e-45	152.3	0.0	1.2e-44	152.0	0.0	1.1	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.8	gi|257053545|ref|YP_003131378.1|	-	4e-08	32.9	0.1	6.7e-08	32.2	0.1	1.3	1	0	0	1	1	1	1	Peptidase	C26
UCR_Fe-S_N	PF10399.4	gi|257053546|ref|YP_003131379.1|	-	0.74	9.0	7.5	1.8	7.7	5.2	1.7	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
Aminotran_4	PF01063.14	gi|257053547|ref|YP_003131380.1|	-	5.8e-46	156.8	0.0	7.1e-46	156.5	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class	IV
ABC2_membrane	PF01061.19	gi|257053548|ref|YP_003131381.1|	-	5.1e-26	91.1	8.2	5.1e-26	91.1	5.7	1.5	2	0	0	2	2	2	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.2	gi|257053548|ref|YP_003131381.1|	-	7.1e-15	54.8	10.5	7.4e-15	54.8	0.4	2.0	1	1	1	2	2	2	2	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.2	gi|257053548|ref|YP_003131381.1|	-	4.8e-08	32.1	2.7	4.8e-08	32.1	1.9	1.9	2	0	0	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.2	gi|257053548|ref|YP_003131381.1|	-	4e-05	22.9	9.0	9.8e-05	21.6	6.2	1.7	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
DUF2074	PF09847.4	gi|257053548|ref|YP_003131381.1|	-	0.00011	21.1	0.6	0.00014	20.7	0.4	1.1	1	0	0	1	1	1	1	Predicted	permease	(DUF2074)
ABC2_membrane_5	PF13346.1	gi|257053548|ref|YP_003131381.1|	-	0.01	15.1	0.4	0.033	13.4	0.2	1.8	1	1	0	1	1	1	0	ABC-2	family	transporter	protein
DUF2678	PF10856.3	gi|257053548|ref|YP_003131381.1|	-	0.036	13.7	0.4	0.086	12.5	0.3	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2678)
Trep_Strep	PF09605.5	gi|257053548|ref|YP_003131381.1|	-	1.4	8.5	9.4	0.19	11.3	3.3	1.8	2	0	0	2	2	2	0	Hypothetical	bacterial	integral	membrane	protein	(Trep_Strep)
ABC_tran	PF00005.22	gi|257053549|ref|YP_003131382.1|	-	3.1e-27	95.5	0.0	5.5e-27	94.7	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|257053549|ref|YP_003131382.1|	-	7.3e-16	58.9	0.0	1.2e-09	38.5	0.0	2.1	1	1	0	2	2	2	2	AAA	domain
AAA_23	PF13476.1	gi|257053549|ref|YP_003131382.1|	-	4.9e-05	23.7	0.0	6.3e-05	23.3	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_15	PF13175.1	gi|257053549|ref|YP_003131382.1|	-	0.00014	21.0	0.0	0.0042	16.1	0.0	2.0	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_16	PF13191.1	gi|257053549|ref|YP_003131382.1|	-	0.00037	20.5	0.1	0.001	19.1	0.0	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
IstB_IS21	PF01695.12	gi|257053549|ref|YP_003131382.1|	-	0.0015	17.9	0.0	0.14	11.5	0.0	2.4	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
AAA_33	PF13671.1	gi|257053549|ref|YP_003131382.1|	-	0.0045	16.8	0.0	0.078	12.8	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
UPF0079	PF02367.12	gi|257053549|ref|YP_003131382.1|	-	0.0046	16.5	0.1	0.0082	15.7	0.0	1.3	1	0	0	1	1	1	1	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_25	PF13481.1	gi|257053549|ref|YP_003131382.1|	-	0.0052	16.2	0.3	0.2	11.0	0.0	2.4	2	1	0	2	2	2	1	AAA	domain
Zeta_toxin	PF06414.7	gi|257053549|ref|YP_003131382.1|	-	0.0061	15.6	0.0	0.01	14.9	0.0	1.2	1	0	0	1	1	1	1	Zeta	toxin
AAA_29	PF13555.1	gi|257053549|ref|YP_003131382.1|	-	0.0078	15.7	0.1	0.016	14.6	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_28	PF13521.1	gi|257053549|ref|YP_003131382.1|	-	0.01	15.8	0.0	0.015	15.2	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA	PF00004.24	gi|257053549|ref|YP_003131382.1|	-	0.01	16.0	0.0	0.021	15.0	0.0	1.5	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
SMC_N	PF02463.14	gi|257053549|ref|YP_003131382.1|	-	0.017	14.3	0.0	0.39	9.9	0.0	2.2	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
AAA_17	PF13207.1	gi|257053549|ref|YP_003131382.1|	-	0.026	15.3	0.4	0.049	14.4	0.2	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_30	PF13604.1	gi|257053549|ref|YP_003131382.1|	-	0.028	13.9	0.0	0.27	10.8	0.0	2.3	2	1	1	3	3	3	0	AAA	domain
SbcCD_C	PF13558.1	gi|257053549|ref|YP_003131382.1|	-	0.032	14.1	0.0	0.14	12.0	0.0	2.1	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
MMR_HSR1	PF01926.18	gi|257053549|ref|YP_003131382.1|	-	0.075	13.0	0.0	0.3	11.0	0.0	1.9	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
NB-ARC	PF00931.17	gi|257053549|ref|YP_003131382.1|	-	0.08	11.7	0.0	0.13	11.0	0.0	1.2	1	0	0	1	1	1	0	NB-ARC	domain
AAA_13	PF13166.1	gi|257053549|ref|YP_003131382.1|	-	0.082	11.3	0.1	0.13	10.7	0.1	1.2	1	0	0	1	1	1	0	AAA	domain
cobW	PF02492.14	gi|257053549|ref|YP_003131382.1|	-	0.094	12.1	0.0	0.17	11.2	0.0	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_22	PF13401.1	gi|257053549|ref|YP_003131382.1|	-	0.13	12.4	0.1	0.2	11.7	0.1	1.6	1	1	0	1	1	1	0	AAA	domain
UbiA	PF01040.13	gi|257053551|ref|YP_003131384.1|	-	2.3e-29	102.3	27.8	2.3e-29	102.3	19.3	2.5	2	1	0	2	2	2	1	UbiA	prenyltransferase	family
COX15-CtaA	PF02628.10	gi|257053551|ref|YP_003131384.1|	-	1.9e-13	49.9	16.5	1.9e-13	49.9	11.5	3.8	2	2	0	2	2	2	1	Cytochrome	oxidase	assembly	protein
PAS_4	PF08448.5	gi|257053552|ref|YP_003131385.1|	-	2.4e-26	91.9	7.4	8.9e-22	77.2	0.3	3.0	3	0	0	3	3	3	2	PAS	fold
PAS_9	PF13426.1	gi|257053552|ref|YP_003131385.1|	-	1.5e-20	73.4	0.0	1.7e-12	47.6	0.0	2.7	2	0	0	2	2	2	2	PAS	domain
PAS	PF00989.19	gi|257053552|ref|YP_003131385.1|	-	7.7e-17	61.1	0.0	8e-10	38.4	0.0	2.8	3	0	0	3	3	3	2	PAS	fold
HATPase_c	PF02518.21	gi|257053552|ref|YP_003131385.1|	-	5.9e-13	48.5	0.0	1.9e-12	46.8	0.0	1.9	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_8	PF13188.1	gi|257053552|ref|YP_003131385.1|	-	3.7e-11	42.4	0.1	0.00038	20.2	0.0	2.9	2	0	0	2	2	2	2	PAS	domain
Response_reg	PF00072.19	gi|257053552|ref|YP_003131385.1|	-	1.5e-08	34.6	0.0	5.3e-08	32.8	0.0	2.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HATPase_c_2	PF13581.1	gi|257053552|ref|YP_003131385.1|	-	2.5e-07	30.5	0.8	1.5e-06	27.9	0.0	2.5	2	1	1	3	3	3	1	Histidine	kinase-like	ATPase	domain
PAS_10	PF13596.1	gi|257053552|ref|YP_003131385.1|	-	9.3e-06	25.8	0.0	3.3e-05	24.1	0.0	1.9	1	1	1	2	2	2	1	PAS	domain
PAS_7	PF12860.2	gi|257053552|ref|YP_003131385.1|	-	0.00023	21.1	0.1	0.56	10.2	0.0	3.6	3	2	1	4	4	4	2	PAS	fold
OKR_DC_1_N	PF03709.10	gi|257053552|ref|YP_003131385.1|	-	0.0012	18.9	0.0	0.0029	17.6	0.0	1.6	1	0	0	1	1	1	1	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
COX2	PF00116.15	gi|257053553|ref|YP_003131386.1|	-	1.6e-23	82.7	0.2	1e-22	80.2	0.1	2.0	1	1	0	1	1	1	1	Cytochrome	C	oxidase	subunit	II,	periplasmic	domain
COX2_TM	PF02790.10	gi|257053553|ref|YP_003131386.1|	-	6.1e-09	35.7	0.1	9.3e-09	35.1	0.1	1.3	1	0	0	1	1	1	1	Cytochrome	C	oxidase	subunit	II,	transmembrane	domain
Cupredoxin_1	PF13473.1	gi|257053553|ref|YP_003131386.1|	-	0.0004	20.2	0.0	0.00075	19.3	0.0	1.5	1	0	0	1	1	1	1	Cupredoxin-like	domain
DUF3611	PF12263.3	gi|257053553|ref|YP_003131386.1|	-	0.033	13.5	0.6	0.047	13.0	0.4	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3611)
Myelin_PLP	PF01275.14	gi|257053553|ref|YP_003131386.1|	-	0.04	13.2	0.1	0.46	9.7	0.0	2.2	2	0	0	2	2	2	0	Myelin	proteolipid	protein	(PLP	or	lipophilin)
7TM_GPCR_Sru	PF10322.4	gi|257053553|ref|YP_003131386.1|	-	0.15	11.1	0.1	0.2	10.7	0.0	1.1	1	0	0	1	1	1	0	Serpentine	type	7TM	GPCR	chemoreceptor	Sru
DUF1772	PF08592.6	gi|257053553|ref|YP_003131386.1|	-	0.4	10.4	4.2	0.62	9.7	2.9	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1772)
MaoC_dehydratas	PF01575.14	gi|257053554|ref|YP_003131387.1|	-	1.6e-17	63.0	0.0	2e-17	62.7	0.0	1.1	1	0	0	1	1	1	1	MaoC	like	domain
MaoC_dehydrat_N	PF13452.1	gi|257053554|ref|YP_003131387.1|	-	0.00011	21.9	0.0	0.00019	21.2	0.0	1.3	1	1	0	1	1	1	1	N-terminal	half	of	MaoC	dehydratase
OrfB_Zn_ribbon	PF07282.6	gi|257053555|ref|YP_003131388.1|	-	1.1e-22	79.4	0.6	2.7e-22	78.1	0.4	1.7	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.14	gi|257053555|ref|YP_003131388.1|	-	6.1e-08	32.3	0.1	1.3e-07	31.3	0.1	1.4	1	1	0	1	1	1	1	Probable	transposase
HypA	PF01155.14	gi|257053555|ref|YP_003131388.1|	-	0.022	14.4	0.1	0.04	13.5	0.1	1.4	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
Prok-RING_1	PF14446.1	gi|257053555|ref|YP_003131388.1|	-	0.059	13.1	1.2	0.12	12.1	0.8	1.5	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
Pox_A_type_inc	PF04508.7	gi|257053555|ref|YP_003131388.1|	-	0.09	12.6	1.0	0.29	11.0	0.7	1.9	1	0	0	1	1	1	0	Viral	A-type	inclusion	protein	repeat
PHD	PF00628.24	gi|257053555|ref|YP_003131388.1|	-	0.78	9.4	7.6	0.56	9.9	0.8	2.8	3	0	0	3	3	3	0	PHD-finger
zinc_ribbon_2	PF13240.1	gi|257053555|ref|YP_003131388.1|	-	1.8	8.1	5.4	2.9	7.4	2.7	2.2	2	1	1	3	3	3	0	zinc-ribbon	domain
ABC_tran	PF00005.22	gi|257053556|ref|YP_003131389.1|	-	3.6e-29	101.8	0.0	7.8e-29	100.7	0.0	1.6	2	0	0	2	2	2	1	ABC	transporter
AAA_21	PF13304.1	gi|257053556|ref|YP_003131389.1|	-	1.1e-06	28.8	0.0	0.002	18.1	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|257053556|ref|YP_003131389.1|	-	0.00083	18.6	0.0	0.0028	16.9	0.0	1.7	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.1	gi|257053556|ref|YP_003131389.1|	-	0.00098	18.6	0.1	0.0021	17.5	0.1	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
Zeta_toxin	PF06414.7	gi|257053556|ref|YP_003131389.1|	-	0.013	14.5	0.0	0.023	13.7	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
AAA_30	PF13604.1	gi|257053556|ref|YP_003131389.1|	-	0.016	14.7	3.9	0.032	13.8	0.3	2.6	2	1	0	2	2	2	0	AAA	domain
AAA_23	PF13476.1	gi|257053556|ref|YP_003131389.1|	-	0.018	15.3	0.0	0.024	14.9	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_16	PF13191.1	gi|257053556|ref|YP_003131389.1|	-	0.021	14.8	1.0	0.067	13.1	0.7	1.9	1	1	0	1	1	1	0	AAA	ATPase	domain
cobW	PF02492.14	gi|257053556|ref|YP_003131389.1|	-	0.036	13.4	0.1	0.063	12.7	0.0	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
Mg_chelatase	PF01078.16	gi|257053556|ref|YP_003131389.1|	-	0.039	13.0	0.0	0.069	12.3	0.0	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_33	PF13671.1	gi|257053556|ref|YP_003131389.1|	-	0.092	12.6	1.3	0.37	10.6	0.8	2.2	1	1	1	2	2	2	0	AAA	domain
DUF258	PF03193.11	gi|257053556|ref|YP_003131389.1|	-	0.13	11.4	0.0	0.21	10.7	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA_13	PF13166.1	gi|257053556|ref|YP_003131389.1|	-	0.21	9.9	0.0	9.5	4.5	0.1	2.0	2	0	0	2	2	2	0	AAA	domain
NB-ARC	PF00931.17	gi|257053556|ref|YP_003131389.1|	-	0.24	10.2	0.0	0.35	9.6	0.0	1.2	1	0	0	1	1	1	0	NB-ARC	domain
DUF3584	PF12128.3	gi|257053556|ref|YP_003131389.1|	-	0.24	8.6	0.2	0.33	8.2	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
FecCD	PF01032.13	gi|257053557|ref|YP_003131390.1|	-	4.5e-91	304.9	26.2	4.5e-91	304.9	18.2	1.5	2	0	0	2	2	2	1	FecCD	transport	family
ABC-3	PF00950.12	gi|257053557|ref|YP_003131390.1|	-	2.7e-06	26.8	14.5	2.7e-06	26.8	10.0	1.6	2	0	0	2	2	2	1	ABC	3	transport	family
ETRAMP	PF09716.5	gi|257053557|ref|YP_003131390.1|	-	0.2	11.6	1.5	1.2	9.1	1.0	2.3	1	0	0	1	1	1	0	Malarial	early	transcribed	membrane	protein	(ETRAMP)
Peripla_BP_2	PF01497.13	gi|257053558|ref|YP_003131391.1|	-	8e-33	113.5	1.6	8e-33	113.5	1.1	1.9	2	0	0	2	2	2	1	Periplasmic	binding	protein
Nitro_FeMo-Co	PF02579.12	gi|257053558|ref|YP_003131391.1|	-	0.12	12.4	0.0	0.3	11.1	0.0	1.7	1	0	0	1	1	1	0	Dinitrogenase	iron-molybdenum	cofactor
IER	PF05760.7	gi|257053558|ref|YP_003131391.1|	-	5	6.9	11.4	4.6	7.0	4.5	2.2	2	0	0	2	2	2	0	Immediate	early	response	protein	(IER)
X	PF00739.14	gi|257053558|ref|YP_003131391.1|	-	6.9	6.5	7.5	1.7	8.5	1.8	2.3	2	1	0	2	2	2	0	Trans-activation	protein	X
CobD_Cbib	PF03186.8	gi|257053559|ref|YP_003131392.1|	-	6.7e-78	261.7	6.8	7.9e-78	261.5	4.7	1.0	1	0	0	1	1	1	1	CobD/Cbib	protein
CobS	PF02654.10	gi|257053560|ref|YP_003131393.1|	-	1.3e-42	146.0	11.9	1.5e-42	145.7	8.3	1.0	1	0	0	1	1	1	1	Cobalamin-5-phosphate	synthase
NTP_transf_3	PF12804.2	gi|257053561|ref|YP_003131394.1|	-	5.3e-18	65.5	0.5	6.2e-18	65.3	0.3	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.14	gi|257053561|ref|YP_003131394.1|	-	0.00066	19.2	0.1	0.0018	17.8	0.0	1.8	1	1	0	2	2	2	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
NTP_transferase	PF00483.18	gi|257053561|ref|YP_003131394.1|	-	0.0022	17.3	0.0	0.0027	17.0	0.0	1.2	1	0	0	1	1	1	1	Nucleotidyl	transferase
DBI_PRT	PF02277.12	gi|257053562|ref|YP_003131395.1|	-	3.3e-16	59.3	0.2	1e-15	57.6	0.1	1.6	1	1	1	2	2	2	1	Phosphoribosyltransferase
Aminotran_1_2	PF00155.16	gi|257053563|ref|YP_003131396.1|	-	2.5e-36	125.3	0.0	2.9e-36	125.1	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
DegT_DnrJ_EryC1	PF01041.12	gi|257053563|ref|YP_003131396.1|	-	0.0021	17.1	0.0	0.0031	16.6	0.0	1.2	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Beta_elim_lyase	PF01212.16	gi|257053563|ref|YP_003131396.1|	-	0.036	13.1	0.0	0.39	9.8	0.0	2.2	1	1	0	1	1	1	0	Beta-eliminating	lyase
CbiZ	PF01955.13	gi|257053564|ref|YP_003131397.1|	-	6.1e-46	156.6	0.1	7e-46	156.4	0.1	1.0	1	0	0	1	1	1	1	Adenosylcobinamide	amidohydrolase
CobA_CobO_BtuR	PF02572.10	gi|257053565|ref|YP_003131398.1|	-	1.3e-49	168.1	0.0	1.5e-49	167.9	0.0	1.1	1	0	0	1	1	1	1	ATP:corrinoid	adenosyltransferase	BtuR/CobO/CobP
DUF4337	PF14235.1	gi|257053566|ref|YP_003131399.1|	-	0.27	11.0	2.1	0.46	10.2	1.5	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4337)
Sigma70_r4	PF04545.11	gi|257053567|ref|YP_003131400.1|	-	0.00022	20.4	0.4	0.0064	15.7	0.0	2.5	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_23	PF13384.1	gi|257053567|ref|YP_003131400.1|	-	0.0005	19.6	0.1	0.0023	17.5	0.2	2.1	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_1	PF00126.22	gi|257053567|ref|YP_003131400.1|	-	0.0031	17.2	0.4	0.0065	16.1	0.3	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
Sigma70_r4_2	PF08281.7	gi|257053567|ref|YP_003131400.1|	-	0.0038	16.6	1.2	0.013	14.9	0.2	2.3	2	0	0	2	2	2	1	Sigma-70,	region	4
MarR_2	PF12802.2	gi|257053567|ref|YP_003131400.1|	-	0.0046	16.5	0.3	0.01	15.4	0.2	1.6	1	0	0	1	1	1	1	MarR	family
HTH_28	PF13518.1	gi|257053567|ref|YP_003131400.1|	-	0.011	15.7	0.2	0.026	14.5	0.1	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
UPF0122	PF04297.9	gi|257053567|ref|YP_003131400.1|	-	0.036	14.0	0.0	0.06	13.3	0.0	1.3	1	0	0	1	1	1	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
HTH_20	PF12840.2	gi|257053567|ref|YP_003131400.1|	-	0.045	13.5	0.1	0.21	11.4	0.0	2.3	1	1	1	2	2	2	0	Helix-turn-helix	domain
HTH_30	PF13556.1	gi|257053567|ref|YP_003131400.1|	-	0.057	13.0	0.3	0.057	13.0	0.2	2.4	3	0	0	3	3	3	0	PucR	C-terminal	helix-turn-helix	domain
LZ_Tnp_IS481	PF13011.1	gi|257053567|ref|YP_003131400.1|	-	0.1	12.9	0.2	0.25	11.7	0.1	1.6	1	0	0	1	1	1	0	leucine-zipper	of	insertion	element	IS481
HTH_10	PF04967.7	gi|257053567|ref|YP_003131400.1|	-	0.1	12.2	0.2	0.55	9.8	0.1	2.2	1	1	0	1	1	1	0	HTH	DNA	binding	domain
GATase_3	PF07685.9	gi|257053568|ref|YP_003131401.1|	-	6.6e-34	116.7	0.0	1.1e-33	116.0	0.0	1.3	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
CbiA	PF01656.18	gi|257053568|ref|YP_003131401.1|	-	7.2e-27	94.0	0.0	9.9e-27	93.6	0.0	1.2	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_26	PF13500.1	gi|257053568|ref|YP_003131401.1|	-	4.8e-19	68.7	0.1	4.8e-18	65.4	0.1	2.0	1	1	0	1	1	1	1	AAA	domain
NTPase_1	PF03266.10	gi|257053568|ref|YP_003131401.1|	-	0.00081	19.1	0.0	0.0014	18.4	0.0	1.3	1	0	0	1	1	1	1	NTPase
DUF1611	PF07755.6	gi|257053568|ref|YP_003131401.1|	-	0.019	13.6	0.0	6.4	5.3	0.0	3.0	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1611)
MobB	PF03205.9	gi|257053568|ref|YP_003131401.1|	-	0.021	14.5	0.0	0.19	11.4	0.0	2.2	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
DUF3799	PF12684.2	gi|257053568|ref|YP_003131401.1|	-	0.12	11.6	0.0	0.19	11.0	0.0	1.1	1	0	0	1	1	1	0	PDDEXK-like	domain	of	unknown	function	(DUF3799)
GATase	PF00117.23	gi|257053568|ref|YP_003131401.1|	-	0.13	11.6	0.0	0.21	10.9	0.0	1.3	1	0	0	1	1	1	0	Glutamine	amidotransferase	class-I
SRP19	PF01922.12	gi|257053569|ref|YP_003131402.1|	-	1.4e-27	96.0	0.1	1.6e-27	95.9	0.0	1.0	1	0	0	1	1	1	1	SRP19	protein
Gar1	PF04410.9	gi|257053570|ref|YP_003131403.1|	-	5.4e-06	25.9	0.0	5.5e-06	25.9	0.0	1.0	1	0	0	1	1	1	1	Gar1/Naf1	RNA	binding	region
DUF1119	PF06550.6	gi|257053571|ref|YP_003131404.1|	-	1.7e-84	283.3	21.1	5.5e-84	281.6	14.6	1.6	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1119)
Presenilin	PF01080.12	gi|257053571|ref|YP_003131404.1|	-	3.3e-05	22.9	2.1	0.089	11.6	0.0	2.3	2	0	0	2	2	2	2	Presenilin
Peptidase_A22B	PF04258.8	gi|257053571|ref|YP_003131404.1|	-	0.00019	20.9	6.4	0.012	15.0	0.2	2.9	3	0	0	3	3	3	2	Signal	peptide	peptidase
MatC_N	PF07158.6	gi|257053572|ref|YP_003131405.1|	-	0.0019	18.0	0.4	0.002	17.9	0.3	1.1	1	0	0	1	1	1	1	Dicarboxylate	carrier	protein	MatC	N-terminus
IncA	PF04156.9	gi|257053572|ref|YP_003131405.1|	-	0.055	13.0	4.9	0.06	12.9	3.4	1.0	1	0	0	1	1	1	0	IncA	protein
DUF95	PF01944.12	gi|257053572|ref|YP_003131405.1|	-	0.36	10.4	4.8	0.42	10.2	3.3	1.0	1	0	0	1	1	1	0	Integral	membrane	protein	DUF95
DUF3054	PF11255.3	gi|257053573|ref|YP_003131406.1|	-	3.4e-22	78.3	11.7	4.2e-22	78.1	8.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3054)
CoA_binding_3	PF13727.1	gi|257053573|ref|YP_003131406.1|	-	3e-05	23.9	4.1	5e-05	23.1	2.9	1.3	1	0	0	1	1	1	1	CoA-binding	domain
DUF3353	PF11833.3	gi|257053573|ref|YP_003131406.1|	-	1.6	8.1	5.9	1.4	8.3	3.0	1.7	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3353)
Acetyltransf_1	PF00583.19	gi|257053575|ref|YP_003131408.1|	-	5e-11	42.4	0.1	7.7e-11	41.8	0.1	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.1	gi|257053575|ref|YP_003131408.1|	-	1.7e-07	31.3	0.0	2.8e-07	30.5	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.1	gi|257053575|ref|YP_003131408.1|	-	1.8e-05	24.5	0.1	3.3e-05	23.7	0.1	1.4	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Acetyltransf_10	PF13673.1	gi|257053575|ref|YP_003131408.1|	-	2.8e-05	24.2	0.2	8.6e-05	22.6	0.1	1.7	1	1	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_6	PF13480.1	gi|257053575|ref|YP_003131408.1|	-	0.0088	15.9	1.4	0.009	15.9	0.1	1.6	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|257053575|ref|YP_003131408.1|	-	0.013	15.2	0.1	0.026	14.2	0.0	1.6	1	1	0	1	1	1	0	FR47-like	protein
Acetyltransf_9	PF13527.1	gi|257053575|ref|YP_003131408.1|	-	0.082	12.7	0.0	0.12	12.1	0.0	1.4	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
XPG_I	PF00867.13	gi|257053576|ref|YP_003131409.1|	-	2.1e-24	85.3	0.0	3.8e-24	84.5	0.0	1.4	1	0	0	1	1	1	1	XPG	I-region
XPG_N	PF00752.12	gi|257053576|ref|YP_003131409.1|	-	1.1e-13	51.2	0.0	2e-13	50.4	0.0	1.4	1	0	0	1	1	1	1	XPG	N-terminal	domain
5_3_exonuc	PF01367.15	gi|257053576|ref|YP_003131409.1|	-	0.002	18.3	0.0	0.0039	17.3	0.0	1.5	1	0	0	1	1	1	1	5'-3'	exonuclease,	C-terminal	SAM	fold
CorA	PF01544.13	gi|257053576|ref|YP_003131409.1|	-	0.061	12.3	0.5	0.093	11.7	0.3	1.2	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
Oxidored_molyb	PF00174.14	gi|257053577|ref|YP_003131410.1|	-	1.8e-38	131.5	0.0	2.8e-38	130.9	0.0	1.2	1	0	0	1	1	1	1	Oxidoreductase	molybdopterin	binding	domain
Mo-co_dimer	PF03404.11	gi|257053577|ref|YP_003131410.1|	-	4.1e-13	49.0	0.3	7.9e-13	48.1	0.2	1.5	1	0	0	1	1	1	1	Mo-co	oxidoreductase	dimerisation	domain
Ribosomal_S2	PF00318.15	gi|257053578|ref|YP_003131411.1|	-	3.1e-36	124.5	0.0	4.6e-18	65.2	0.2	2.1	1	1	1	2	2	2	2	Ribosomal	protein	S2
Enolase_C	PF00113.17	gi|257053579|ref|YP_003131412.1|	-	3.1e-76	256.2	0.4	4.1e-76	255.7	0.3	1.1	1	0	0	1	1	1	1	Enolase,	C-terminal	TIM	barrel	domain
Enolase_N	PF03952.11	gi|257053579|ref|YP_003131412.1|	-	3.4e-39	133.7	0.2	8.3e-39	132.5	0.2	1.7	1	0	0	1	1	1	1	Enolase,	N-terminal	domain
MR_MLE	PF01188.16	gi|257053579|ref|YP_003131412.1|	-	0.00033	21.1	0.2	0.00084	19.8	0.1	1.8	1	1	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	C-terminal	domain
MR_MLE_C	PF13378.1	gi|257053579|ref|YP_003131412.1|	-	0.00061	19.7	0.1	0.0024	17.8	0.0	2.0	2	0	0	2	2	2	1	Enolase	C-terminal	domain-like
MAAL_C	PF07476.6	gi|257053579|ref|YP_003131412.1|	-	0.0014	17.5	1.4	0.0014	17.5	0.1	1.7	2	0	0	2	2	2	1	Methylaspartate	ammonia-lyase	C-terminus
RNA_pol_Rpb6	PF01192.17	gi|257053580|ref|YP_003131413.1|	-	2.4e-18	65.5	0.1	2.6e-18	65.4	0.1	1.0	1	0	0	1	1	1	1	RNA	polymerase	Rpb6
RNA_pol_N	PF01194.12	gi|257053581|ref|YP_003131414.1|	-	8.5e-29	99.3	0.2	9.3e-29	99.2	0.1	1.0	1	0	0	1	1	1	1	RNA	polymerases	N	/	8	kDa	subunit
Ribosomal_S9	PF00380.14	gi|257053582|ref|YP_003131415.1|	-	1.5e-35	122.0	0.0	1.7e-35	121.8	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S9/S16
Ribosomal_L13	PF00572.13	gi|257053583|ref|YP_003131416.1|	-	1.9e-20	73.1	0.0	2.5e-20	72.8	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L13
Ribosomal_L18e	PF00828.14	gi|257053584|ref|YP_003131417.1|	-	5.7e-13	49.3	0.1	7e-13	49.0	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L18e/L15
RNA_pol_A_bac	PF01000.21	gi|257053585|ref|YP_003131418.1|	-	4.4e-20	71.9	0.0	1.2e-18	67.2	0.0	2.7	2	1	0	2	2	2	1	RNA	polymerase	Rpb3/RpoA	insert	domain
RNA_pol_L	PF01193.19	gi|257053585|ref|YP_003131418.1|	-	3.6e-10	38.8	0.0	4.5e-10	38.5	0.0	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
Ribosomal_S11	PF00411.14	gi|257053586|ref|YP_003131419.1|	-	9.2e-44	148.1	0.3	1.2e-43	147.7	0.2	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S11
S4	PF01479.20	gi|257053587|ref|YP_003131420.1|	-	2.9e-17	61.8	0.3	3.1e-16	58.5	0.0	2.2	2	0	0	2	2	2	1	S4	domain
Ribosomal_S4	PF00163.14	gi|257053587|ref|YP_003131420.1|	-	0.00039	20.7	0.2	0.0027	18.0	0.1	2.1	2	0	0	2	2	2	1	Ribosomal	protein	S4/S9	N-terminal	domain
S4_2	PF13275.1	gi|257053587|ref|YP_003131420.1|	-	0.012	15.1	0.0	0.023	14.2	0.0	1.5	1	0	0	1	1	1	0	S4	domain
Ribosomal_S13	PF00416.17	gi|257053588|ref|YP_003131421.1|	-	1.1e-34	119.1	2.0	1.4e-34	118.7	1.4	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S13/S18
FbpA	PF05833.6	gi|257053588|ref|YP_003131421.1|	-	0.0086	14.6	0.0	0.0086	14.6	0.0	1.2	1	0	0	1	1	1	1	Fibronectin-binding	protein	A	N-terminus	(FbpA)
DUF1129	PF06570.6	gi|257053589|ref|YP_003131422.1|	-	0.0069	15.7	3.7	0.0095	15.2	2.6	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1129)
DUF3366	PF11846.3	gi|257053589|ref|YP_003131422.1|	-	0.47	10.3	0.1	0.47	10.3	0.0	2.7	2	1	2	4	4	4	0	Domain	of	unknown	function	(DUF3366)
adh_short	PF00106.20	gi|257053590|ref|YP_003131423.1|	-	2.3e-29	102.4	1.1	3.6e-29	101.8	0.8	1.3	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.5	gi|257053590|ref|YP_003131423.1|	-	5.6e-13	48.9	0.4	6.6e-10	38.9	0.0	2.2	2	0	0	2	2	2	2	KR	domain
adh_short_C2	PF13561.1	gi|257053590|ref|YP_003131423.1|	-	4.3e-10	39.7	0.0	5.4e-10	39.4	0.0	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
NAD_binding_10	PF13460.1	gi|257053590|ref|YP_003131423.1|	-	8.1e-06	25.9	1.9	2.3e-05	24.4	1.3	1.7	1	1	0	1	1	1	1	NADH(P)-binding
RmlD_sub_bind	PF04321.12	gi|257053590|ref|YP_003131423.1|	-	0.00034	19.6	0.0	0.00049	19.0	0.0	1.2	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Epimerase	PF01370.16	gi|257053590|ref|YP_003131423.1|	-	0.0072	15.7	0.0	0.0097	15.3	0.0	1.3	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
Eno-Rase_NADH_b	PF12242.3	gi|257053590|ref|YP_003131423.1|	-	0.11	12.2	0.0	0.25	11.1	0.0	1.6	1	0	0	1	1	1	0	NAD(P)H	binding	domain	of	trans-2-enoyl-CoA	reductase
ADC	PF06314.6	gi|257053591|ref|YP_003131424.1|	-	4.9e-19	68.6	0.1	8.5e-19	67.8	0.1	1.4	1	1	0	1	1	1	1	Acetoacetate	decarboxylase	(ADC)
ParA	PF10609.4	gi|257053592|ref|YP_003131425.1|	-	1.4e-35	120.9	0.0	2.5e-35	120.2	0.0	1.4	1	0	0	1	1	1	1	ParA/MinD	ATPase	like
CbiA	PF01656.18	gi|257053592|ref|YP_003131425.1|	-	1.9e-23	82.9	0.0	2.8e-23	82.3	0.0	1.2	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
DUF59	PF01883.14	gi|257053592|ref|YP_003131425.1|	-	3.3e-09	36.6	0.5	6.6e-09	35.6	0.3	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF59
MipZ	PF09140.6	gi|257053592|ref|YP_003131425.1|	-	5.2e-09	35.5	0.0	8.4e-09	34.8	0.0	1.3	1	0	0	1	1	1	1	ATPase	MipZ
AAA_31	PF13614.1	gi|257053592|ref|YP_003131425.1|	-	6.4e-09	35.9	0.0	1.9e-07	31.1	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
Fer4_NifH	PF00142.13	gi|257053592|ref|YP_003131425.1|	-	1.1e-06	28.1	0.0	0.00033	19.9	0.1	2.2	2	0	0	2	2	2	2	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
VirC1	PF07015.6	gi|257053592|ref|YP_003131425.1|	-	6e-06	25.4	0.0	9e-06	24.9	0.0	1.2	1	0	0	1	1	1	1	VirC1	protein
ArsA_ATPase	PF02374.10	gi|257053592|ref|YP_003131425.1|	-	1.4e-05	24.2	2.9	0.00044	19.3	0.4	2.1	2	0	0	2	2	2	2	Anion-transporting	ATPase
AAA_26	PF13500.1	gi|257053592|ref|YP_003131425.1|	-	0.0008	19.0	0.0	0.57	9.7	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
AAA_25	PF13481.1	gi|257053592|ref|YP_003131425.1|	-	0.024	14.0	0.0	0.035	13.5	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_10	PF12846.2	gi|257053592|ref|YP_003131425.1|	-	0.066	12.6	0.0	0.097	12.0	0.0	1.3	1	0	0	1	1	1	0	AAA-like	domain
SRP54	PF00448.17	gi|257053592|ref|YP_003131425.1|	-	0.067	12.6	0.0	0.1	12.0	0.0	1.2	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
ArgK	PF03308.11	gi|257053592|ref|YP_003131425.1|	-	0.076	11.7	0.3	0.13	11.0	0.2	1.3	1	0	0	1	1	1	0	ArgK	protein
AAA_19	PF13245.1	gi|257053592|ref|YP_003131425.1|	-	0.68	9.7	8.8	1.8	8.4	0.3	3.1	3	1	0	3	3	3	0	Part	of	AAA	domain
tRNA-synt_1b	PF00579.20	gi|257053593|ref|YP_003131426.1|	-	4.8e-56	190.0	0.0	5.5e-56	189.8	0.0	1.0	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(W	and	Y)
Arginase	PF00491.16	gi|257053593|ref|YP_003131426.1|	-	0.06	12.6	0.4	0.092	12.0	0.3	1.2	1	0	0	1	1	1	0	Arginase	family
Methyltransf_11	PF08241.7	gi|257053594|ref|YP_003131427.1|	-	4.2e-19	68.8	0.0	6.3e-19	68.2	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|257053594|ref|YP_003131427.1|	-	5.2e-12	45.6	0.0	7.3e-12	45.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|257053594|ref|YP_003131427.1|	-	7.4e-12	45.5	0.0	2.7e-11	43.7	0.0	1.9	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|257053594|ref|YP_003131427.1|	-	6.4e-11	42.8	0.2	1e-10	42.1	0.1	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|257053594|ref|YP_003131427.1|	-	6.5e-11	42.5	0.0	1.3e-10	41.5	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|257053594|ref|YP_003131427.1|	-	2.8e-10	40.1	0.0	3.6e-10	39.7	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|257053594|ref|YP_003131427.1|	-	0.00079	18.6	0.0	0.001	18.2	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_26	PF13659.1	gi|257053594|ref|YP_003131427.1|	-	0.0016	18.4	0.1	0.0033	17.4	0.1	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_9	PF08003.6	gi|257053594|ref|YP_003131427.1|	-	0.0032	16.2	0.0	0.0044	15.7	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
PCMT	PF01135.14	gi|257053594|ref|YP_003131427.1|	-	0.019	14.5	0.0	0.029	13.9	0.0	1.2	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
AdoMet_MTase	PF07757.8	gi|257053594|ref|YP_003131427.1|	-	0.058	13.5	0.1	0.27	11.3	0.1	1.9	1	1	1	2	2	2	0	Predicted	AdoMet-dependent	methyltransferase
EF-hand_9	PF14658.1	gi|257053594|ref|YP_003131427.1|	-	0.08	12.8	0.0	0.19	11.6	0.0	1.6	1	0	0	1	1	1	0	EF-hand	domain
MetW	PF07021.7	gi|257053594|ref|YP_003131427.1|	-	0.14	11.5	0.1	0.21	10.9	0.0	1.2	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
Methyltransf_4	PF02390.12	gi|257053594|ref|YP_003131427.1|	-	0.16	10.9	0.0	0.3	10.0	0.0	1.5	2	0	0	2	2	2	0	Putative	methyltransferase
Claudin_2	PF13903.1	gi|257053595|ref|YP_003131428.1|	-	0.042	13.5	1.8	0.66	9.6	0.2	2.3	2	0	0	2	2	2	0	PMP-22/EMP/MP20/Claudin	tight	junction
Sulfate_transp	PF00916.15	gi|257053595|ref|YP_003131428.1|	-	0.072	12.0	0.2	0.072	12.0	0.1	2.7	2	1	1	3	3	3	0	Sulfate	transporter	family
DUF1469	PF07332.6	gi|257053595|ref|YP_003131428.1|	-	0.12	12.1	0.0	0.12	12.1	0.0	2.8	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1469)
DUF4191	PF13829.1	gi|257053595|ref|YP_003131428.1|	-	1.3	8.1	5.2	4.5	6.3	0.0	2.8	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4191)
DUF2208	PF09973.4	gi|257053595|ref|YP_003131428.1|	-	3.1	6.9	7.4	1.2	8.3	2.1	2.3	2	1	0	2	2	2	0	Predicted	membrane	protein	(DUF2208)
PemK	PF02452.12	gi|257053596|ref|YP_003131429.1|	-	1.2e-08	35.1	0.0	1.3e-08	34.9	0.0	1.1	1	0	0	1	1	1	1	PemK-like	protein
MarR_2	PF12802.2	gi|257053597|ref|YP_003131430.1|	-	1.4e-07	31.0	0.1	2.6e-07	30.1	0.0	1.4	2	0	0	2	2	2	1	MarR	family
HTH_IclR	PF09339.5	gi|257053597|ref|YP_003131430.1|	-	1.9e-06	27.3	0.1	2.9e-06	26.7	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_20	PF12840.2	gi|257053597|ref|YP_003131430.1|	-	6.7e-06	25.8	0.1	1.4e-05	24.8	0.0	1.5	2	0	0	2	2	2	1	Helix-turn-helix	domain
TrmB	PF01978.14	gi|257053597|ref|YP_003131430.1|	-	9.1e-06	25.2	0.0	1.5e-05	24.5	0.0	1.4	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.1	gi|257053597|ref|YP_003131430.1|	-	0.00051	20.3	0.0	0.0011	19.2	0.0	1.6	1	1	1	2	2	2	1	Winged	helix	DNA-binding	domain
Rrf2	PF02082.15	gi|257053597|ref|YP_003131430.1|	-	0.0013	18.7	0.0	0.0024	17.9	0.0	1.4	2	0	0	2	2	2	1	Transcriptional	regulator
HTH_24	PF13412.1	gi|257053597|ref|YP_003131430.1|	-	0.0021	17.4	0.0	0.0036	16.6	0.0	1.5	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_23	PF13384.1	gi|257053597|ref|YP_003131430.1|	-	0.0043	16.6	0.0	0.0072	15.9	0.0	1.3	1	0	0	1	1	1	1	Homeodomain-like	domain
Fe_dep_repress	PF01325.14	gi|257053597|ref|YP_003131430.1|	-	0.0047	16.8	0.0	0.0079	16.1	0.0	1.3	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
DUF2336	PF10098.4	gi|257053597|ref|YP_003131430.1|	-	0.008	15.4	0.0	0.0091	15.2	0.0	1.2	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2336)
HTH_11	PF08279.7	gi|257053597|ref|YP_003131430.1|	-	0.069	12.8	0.0	0.096	12.3	0.0	1.2	1	0	0	1	1	1	0	HTH	domain
Sulfolobus_pRN	PF05584.6	gi|257053597|ref|YP_003131430.1|	-	0.095	12.6	0.0	0.13	12.2	0.0	1.2	1	0	0	1	1	1	0	Sulfolobus	plasmid	regulatory	protein
HTH_Crp_2	PF13545.1	gi|257053597|ref|YP_003131430.1|	-	0.11	12.2	0.0	0.16	11.7	0.0	1.2	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_32	PF13565.1	gi|257053597|ref|YP_003131430.1|	-	0.14	12.9	0.0	0.28	12.0	0.0	1.5	1	1	0	1	1	1	0	Homeodomain-like	domain
HTH_9	PF08221.6	gi|257053597|ref|YP_003131430.1|	-	0.15	11.9	0.0	0.29	11.0	0.0	1.5	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
SUI1	PF01253.17	gi|257053598|ref|YP_003131431.1|	-	5e-25	87.1	0.0	5.7e-25	86.9	0.0	1.1	1	0	0	1	1	1	1	Translation	initiation	factor	SUI1
Img2	PF05046.9	gi|257053598|ref|YP_003131431.1|	-	0.018	15.2	0.0	0.023	14.8	0.0	1.4	1	1	0	1	1	1	0	Mitochondrial	large	subunit	ribosomal	protein	(Img2)
DTW	PF03942.10	gi|257053598|ref|YP_003131431.1|	-	0.071	12.3	0.6	0.085	12.0	0.4	1.1	1	0	0	1	1	1	0	DTW	domain
DUF2631	PF10939.3	gi|257053598|ref|YP_003131431.1|	-	0.11	12.2	0.0	0.25	11.2	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2631)
Transglut_core	PF01841.14	gi|257053599|ref|YP_003131432.1|	-	5.1e-30	103.9	0.1	1.5e-29	102.5	0.1	1.8	1	0	0	1	1	1	1	Transglutaminase-like	superfamily
Transglut_core3	PF13471.1	gi|257053599|ref|YP_003131432.1|	-	1.4e-05	24.8	1.1	0.00013	21.7	0.0	2.5	2	0	0	2	2	2	1	Transglutaminase-like	superfamily
DUF4129	PF13559.1	gi|257053599|ref|YP_003131432.1|	-	0.00028	20.8	9.0	0.00028	20.8	6.2	3.7	4	1	1	5	5	5	1	Domain	of	unknown	function	(DUF4129)
DUF58	PF01882.13	gi|257053600|ref|YP_003131433.1|	-	1.2e-15	57.3	0.0	2.6e-15	56.3	0.0	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF58
AAA_3	PF07726.6	gi|257053601|ref|YP_003131434.1|	-	1.6e-61	205.7	0.0	2.7e-61	204.9	0.0	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_5	PF07728.9	gi|257053601|ref|YP_003131434.1|	-	1.6e-13	50.5	0.0	3.1e-13	49.6	0.0	1.5	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.24	gi|257053601|ref|YP_003131434.1|	-	6.4e-06	26.4	0.0	1e-05	25.7	0.0	1.3	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.21	gi|257053601|ref|YP_003131434.1|	-	2.4e-05	23.8	0.0	0.00035	20.0	0.0	2.1	1	1	0	1	1	1	1	Sigma-54	interaction	domain
MCM	PF00493.18	gi|257053601|ref|YP_003131434.1|	-	9.6e-05	21.3	0.0	0.00058	18.7	0.0	2.0	2	0	0	2	2	2	1	MCM2/3/5	family
RuvB_N	PF05496.7	gi|257053601|ref|YP_003131434.1|	-	0.00038	19.5	0.0	0.0024	16.9	0.0	2.0	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
Mg_chelatase	PF01078.16	gi|257053601|ref|YP_003131434.1|	-	0.0015	17.7	0.0	0.19	10.8	0.0	2.2	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
AAA_2	PF07724.9	gi|257053601|ref|YP_003131434.1|	-	0.019	14.8	0.0	0.04	13.8	0.0	1.5	1	1	0	1	1	1	0	AAA	domain	(Cdc48	subfamily)
Aminotran_1_2	PF00155.16	gi|257053602|ref|YP_003131435.1|	-	6.1e-63	212.9	0.0	6.8e-63	212.7	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
DegT_DnrJ_EryC1	PF01041.12	gi|257053602|ref|YP_003131435.1|	-	3.7e-16	59.1	0.9	6.8e-16	58.2	0.3	1.7	2	0	0	2	2	2	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Beta_elim_lyase	PF01212.16	gi|257053602|ref|YP_003131435.1|	-	1.4e-10	40.7	0.1	3.6e-10	39.4	0.0	1.6	2	0	0	2	2	2	1	Beta-eliminating	lyase
Cys_Met_Meta_PP	PF01053.15	gi|257053602|ref|YP_003131435.1|	-	1.6e-06	26.6	0.0	2.4e-06	26.1	0.0	1.2	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_5	PF00266.14	gi|257053602|ref|YP_003131435.1|	-	9.8e-06	24.5	0.0	1.4e-05	23.9	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class-V
Aminotran_3	PF00202.16	gi|257053602|ref|YP_003131435.1|	-	0.079	11.7	0.0	0.11	11.2	0.0	1.3	1	0	0	1	1	1	0	Aminotransferase	class-III
Citrate_synt	PF00285.16	gi|257053603|ref|YP_003131436.1|	-	1.2e-111	372.9	0.0	1.4e-111	372.7	0.0	1.0	1	0	0	1	1	1	1	Citrate	synthase
Lactamase_B_2	PF12706.2	gi|257053604|ref|YP_003131437.1|	-	1.9e-15	56.9	0.3	2.6e-15	56.4	0.2	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.1	gi|257053604|ref|YP_003131437.1|	-	4.7e-11	42.6	0.0	6.9e-11	42.1	0.0	1.4	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.22	gi|257053604|ref|YP_003131437.1|	-	0.035	13.7	6.2	0.14	11.7	4.3	2.2	1	1	0	1	1	1	0	Metallo-beta-lactamase	superfamily
Baculo_PEP_C	PF04513.7	gi|257053605|ref|YP_003131438.1|	-	3.3e-06	26.9	0.3	0.033	13.9	0.0	2.2	1	1	1	2	2	2	2	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
AAA_13	PF13166.1	gi|257053605|ref|YP_003131438.1|	-	2.1e-05	23.2	0.8	2.8e-05	22.8	0.6	1.1	1	0	0	1	1	1	1	AAA	domain
NPV_P10	PF05531.7	gi|257053605|ref|YP_003131438.1|	-	3.7e-05	23.9	3.9	0.021	15.0	1.0	3.8	1	1	2	3	3	3	2	Nucleopolyhedrovirus	P10	protein
Reo_sigmaC	PF04582.7	gi|257053605|ref|YP_003131438.1|	-	9e-05	21.7	2.0	0.00015	21.0	1.4	1.4	1	0	0	1	1	1	1	Reovirus	sigma	C	capsid	protein
Spc7	PF08317.6	gi|257053605|ref|YP_003131438.1|	-	0.00013	20.7	4.1	0.00027	19.6	2.8	1.5	1	1	0	1	1	1	1	Spc7	kinetochore	protein
Gp58	PF07902.6	gi|257053605|ref|YP_003131438.1|	-	0.00018	19.8	0.6	0.00025	19.4	0.4	1.2	1	0	0	1	1	1	1	gp58-like	protein
CENP-F_leu_zip	PF10473.4	gi|257053605|ref|YP_003131438.1|	-	0.00019	21.3	12.1	0.0085	15.9	4.9	2.5	1	1	2	3	3	3	2	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Laminin_II	PF06009.7	gi|257053605|ref|YP_003131438.1|	-	0.00025	20.8	1.0	0.00056	19.6	0.7	1.6	1	0	0	1	1	1	1	Laminin	Domain	II
Seryl_tRNA_N	PF02403.17	gi|257053605|ref|YP_003131438.1|	-	0.00036	20.5	3.0	0.0041	17.1	0.2	3.0	1	1	2	3	3	3	1	Seryl-tRNA	synthetase	N-terminal	domain
Filament	PF00038.16	gi|257053605|ref|YP_003131438.1|	-	0.00039	20.0	7.0	0.029	13.8	1.3	2.2	1	1	1	2	2	2	2	Intermediate	filament	protein
IncA	PF04156.9	gi|257053605|ref|YP_003131438.1|	-	0.00039	20.0	11.1	0.0076	15.8	7.5	2.2	1	1	0	1	1	1	1	IncA	protein
DivIC	PF04977.10	gi|257053605|ref|YP_003131438.1|	-	0.00039	19.8	1.5	0.32	10.5	0.1	3.2	3	0	0	3	3	3	1	Septum	formation	initiator
DUF869	PF05911.6	gi|257053605|ref|YP_003131438.1|	-	0.00049	18.4	2.0	0.00059	18.2	1.4	1.2	1	0	0	1	1	1	1	Plant	protein	of	unknown	function	(DUF869)
EzrA	PF06160.7	gi|257053605|ref|YP_003131438.1|	-	0.00062	18.0	1.8	0.00062	18.0	1.2	1.4	1	1	0	1	1	1	1	Septation	ring	formation	regulator,	EzrA
bZIP_1	PF00170.16	gi|257053605|ref|YP_003131438.1|	-	0.00069	19.5	3.1	0.16	11.9	0.0	3.8	4	0	0	4	4	4	1	bZIP	transcription	factor
BLOC1_2	PF10046.4	gi|257053605|ref|YP_003131438.1|	-	0.00072	19.6	6.9	0.07	13.2	2.4	3.2	1	1	1	2	2	2	1	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
FlaC_arch	PF05377.6	gi|257053605|ref|YP_003131438.1|	-	0.00095	19.0	8.5	0.72	9.7	0.8	4.1	4	0	0	4	4	4	2	Flagella	accessory	protein	C	(FlaC)
MCPsignal	PF00015.16	gi|257053605|ref|YP_003131438.1|	-	0.0011	18.5	2.2	0.0019	17.8	1.5	1.4	1	0	0	1	1	1	1	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
Spectrin	PF00435.16	gi|257053605|ref|YP_003131438.1|	-	0.0012	19.1	2.1	0.0012	19.1	1.5	2.1	1	1	1	2	2	2	1	Spectrin	repeat
TBPIP	PF07106.8	gi|257053605|ref|YP_003131438.1|	-	0.0012	18.3	4.3	0.15	11.5	1.5	2.2	1	1	1	2	2	2	2	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
MAD	PF05557.8	gi|257053605|ref|YP_003131438.1|	-	0.0018	16.4	5.1	0.003	15.7	3.2	1.5	1	1	0	1	1	1	1	Mitotic	checkpoint	protein
WEMBL	PF05701.6	gi|257053605|ref|YP_003131438.1|	-	0.0027	16.2	6.7	0.0052	15.3	4.6	1.4	1	0	0	1	1	1	1	Weak	chloroplast	movement	under	blue	light
DUF1664	PF07889.7	gi|257053605|ref|YP_003131438.1|	-	0.0027	17.4	4.0	0.01	15.6	0.8	2.8	1	1	2	3	3	3	1	Protein	of	unknown	function	(DUF1664)
AAA_27	PF13514.1	gi|257053605|ref|YP_003131438.1|	-	0.0031	15.3	4.2	0.004	14.9	2.9	1.1	1	0	0	1	1	1	1	AAA	domain
zf-C4H2	PF10146.4	gi|257053605|ref|YP_003131438.1|	-	0.0033	17.4	4.8	0.0056	16.7	3.3	1.3	1	0	0	1	1	1	1	Zinc	finger-containing	protein
Laminin_I	PF06008.9	gi|257053605|ref|YP_003131438.1|	-	0.0037	16.6	1.7	0.0063	15.8	1.2	1.4	1	0	0	1	1	1	1	Laminin	Domain	I
Tropomyosin_1	PF12718.2	gi|257053605|ref|YP_003131438.1|	-	0.0042	16.9	11.8	0.039	13.8	3.4	2.4	1	1	1	2	2	2	2	Tropomyosin	like
NIT	PF08376.5	gi|257053605|ref|YP_003131438.1|	-	0.0043	16.5	3.9	0.026	14.0	0.4	2.7	1	1	3	4	4	4	1	Nitrate	and	nitrite	sensing
DUF16	PF01519.11	gi|257053605|ref|YP_003131438.1|	-	0.0053	16.9	2.3	0.027	14.6	0.7	2.3	1	1	1	2	2	2	1	Protein	of	unknown	function	DUF16
ATG16	PF08614.6	gi|257053605|ref|YP_003131438.1|	-	0.0055	16.5	4.5	0.028	14.2	2.9	2.1	1	1	0	1	1	1	1	Autophagy	protein	16	(ATG16)
Sec34	PF04136.10	gi|257053605|ref|YP_003131438.1|	-	0.0058	16.3	3.1	0.89	9.2	0.5	2.3	1	1	1	2	2	2	2	Sec34-like	family
Cast	PF10174.4	gi|257053605|ref|YP_003131438.1|	-	0.0062	14.6	6.1	0.0084	14.2	4.2	1.1	1	0	0	1	1	1	1	RIM-binding	protein	of	the	cytomatrix	active	zone
DUF948	PF06103.6	gi|257053605|ref|YP_003131438.1|	-	0.0075	16.1	0.5	0.25	11.2	0.2	2.8	1	1	2	3	3	2	1	Bacterial	protein	of	unknown	function	(DUF948)
HrpB7	PF09486.5	gi|257053605|ref|YP_003131438.1|	-	0.0086	16.0	0.7	0.032	14.1	0.1	2.0	1	1	1	2	2	2	1	Bacterial	type	III	secretion	protein	(HrpB7)
DUF4559	PF15112.1	gi|257053605|ref|YP_003131438.1|	-	0.0092	15.1	3.4	0.014	14.5	2.4	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4559)
AATF-Che1	PF13339.1	gi|257053605|ref|YP_003131438.1|	-	0.011	15.9	0.2	0.021	14.9	0.1	1.5	1	1	0	1	1	1	0	Apoptosis	antagonizing	transcription	factor
MscS_porin	PF12795.2	gi|257053605|ref|YP_003131438.1|	-	0.011	15.0	0.5	0.026	13.8	0.3	1.7	1	1	0	1	1	1	0	Mechanosensitive	ion	channel	porin	domain
COG2	PF06148.6	gi|257053605|ref|YP_003131438.1|	-	0.012	15.4	5.0	5.5	6.8	3.5	3.4	1	1	0	1	1	1	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
FliJ	PF02050.11	gi|257053605|ref|YP_003131438.1|	-	0.021	14.8	0.3	0.13	12.2	0.0	2.3	1	1	1	2	2	2	0	Flagellar	FliJ	protein
PilJ	PF13675.1	gi|257053605|ref|YP_003131438.1|	-	0.027	14.7	6.2	0.86	9.9	0.2	3.1	2	1	1	3	3	2	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
GAS	PF13851.1	gi|257053605|ref|YP_003131438.1|	-	0.03	13.5	1.7	0.079	12.1	0.2	1.9	1	1	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
MerR-DNA-bind	PF09278.6	gi|257053605|ref|YP_003131438.1|	-	0.03	14.7	0.4	12	6.4	0.0	3.9	4	1	0	4	4	3	0	MerR,	DNA	binding
TMCO5	PF14992.1	gi|257053605|ref|YP_003131438.1|	-	0.033	13.3	3.8	0.062	12.4	2.6	1.4	1	0	0	1	1	1	0	TMCO5	family
CENP-Q	PF13094.1	gi|257053605|ref|YP_003131438.1|	-	0.034	14.1	4.5	0.068	13.2	3.1	1.5	1	0	0	1	1	1	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
TMF_TATA_bd	PF12325.3	gi|257053605|ref|YP_003131438.1|	-	0.036	13.8	9.8	0.036	13.7	2.1	2.5	1	1	0	2	2	2	0	TATA	element	modulatory	factor	1	TATA	binding
DUF904	PF06005.7	gi|257053605|ref|YP_003131438.1|	-	0.036	14.3	5.8	0.21	11.9	0.7	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF904)
Myosin_tail_1	PF01576.14	gi|257053605|ref|YP_003131438.1|	-	0.042	11.5	10.7	0.064	10.9	7.4	1.2	1	0	0	1	1	1	0	Myosin	tail
Tup_N	PF08581.5	gi|257053605|ref|YP_003131438.1|	-	0.044	13.9	1.1	0.17	12.0	0.2	2.5	1	1	1	2	2	2	0	Tup	N-terminal
DUF972	PF06156.8	gi|257053605|ref|YP_003131438.1|	-	0.044	14.1	5.2	0.37	11.1	0.9	2.7	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF972)
DUF812	PF05667.6	gi|257053605|ref|YP_003131438.1|	-	0.045	12.2	3.8	0.082	11.4	2.6	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF812)
Phage_GP20	PF06810.6	gi|257053605|ref|YP_003131438.1|	-	0.052	12.9	5.2	0.093	12.1	1.3	2.5	1	1	1	2	2	2	0	Phage	minor	structural	protein	GP20
Mod_r	PF07200.8	gi|257053605|ref|YP_003131438.1|	-	0.061	13.2	5.7	0.71	9.7	0.8	2.4	2	1	1	3	3	2	0	Modifier	of	rudimentary	(Mod(r))	protein
TPR_MLP1_2	PF07926.7	gi|257053605|ref|YP_003131438.1|	-	0.062	13.0	3.8	0.22	11.2	2.6	1.9	1	1	0	1	1	1	0	TPR/MLP1/MLP2-like	protein
V-SNARE	PF05008.10	gi|257053605|ref|YP_003131438.1|	-	0.062	13.4	7.4	1	9.5	1.5	3.4	1	1	2	3	3	3	0	Vesicle	transport	v-SNARE	protein	N-terminus
Hemagglutinin	PF00509.13	gi|257053605|ref|YP_003131438.1|	-	0.068	11.3	1.0	0.11	10.6	0.7	1.4	1	0	0	1	1	1	0	Haemagglutinin
Mnd1	PF03962.10	gi|257053605|ref|YP_003131438.1|	-	0.076	12.6	2.9	0.48	10.0	2.0	2.1	1	1	0	1	1	1	0	Mnd1	family
APG6	PF04111.7	gi|257053605|ref|YP_003131438.1|	-	0.079	11.9	7.1	0.26	10.3	4.9	1.8	1	1	0	1	1	1	0	Autophagy	protein	Apg6
Prominin	PF05478.6	gi|257053605|ref|YP_003131438.1|	-	0.08	10.4	0.3	0.11	10.0	0.2	1.1	1	0	0	1	1	1	0	Prominin
DUF3972	PF13118.1	gi|257053605|ref|YP_003131438.1|	-	0.087	12.9	1.3	0.18	11.8	0.8	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3972)
DUF4200	PF13863.1	gi|257053605|ref|YP_003131438.1|	-	0.089	12.7	3.9	2.1	8.3	0.4	2.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4200)
RmuC	PF02646.11	gi|257053605|ref|YP_003131438.1|	-	0.091	11.5	1.9	1.7	7.4	0.2	2.7	1	1	1	2	2	2	0	RmuC	family
Prefoldin	PF02996.12	gi|257053605|ref|YP_003131438.1|	-	0.093	12.3	5.8	12	5.5	1.6	3.8	1	1	1	2	2	2	0	Prefoldin	subunit
Synaptobrevin	PF00957.16	gi|257053605|ref|YP_003131438.1|	-	0.1	12.1	1.4	0.29	10.7	1.0	1.8	1	0	0	1	1	1	0	Synaptobrevin
Cauli_AT	PF03233.8	gi|257053605|ref|YP_003131438.1|	-	0.11	12.2	0.2	12	5.6	0.0	2.3	1	1	1	2	2	2	0	Aphid	transmission	protein
HOOK	PF05622.7	gi|257053605|ref|YP_003131438.1|	-	0.11	10.2	7.7	0.16	9.7	5.3	1.1	1	0	0	1	1	1	0	HOOK	protein
Osmo_CC	PF08946.5	gi|257053605|ref|YP_003131438.1|	-	0.11	12.5	3.1	18	5.4	0.3	3.5	3	0	0	3	3	2	0	Osmosensory	transporter	coiled	coil
Med9	PF07544.8	gi|257053605|ref|YP_003131438.1|	-	0.11	12.1	3.2	0.35	10.6	0.3	2.8	1	1	1	2	2	2	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
FH2	PF02181.18	gi|257053605|ref|YP_003131438.1|	-	0.12	11.2	2.0	0.42	9.4	0.3	2.0	1	1	1	2	2	2	0	Formin	Homology	2	Domain
TMF_DNA_bd	PF12329.3	gi|257053605|ref|YP_003131438.1|	-	0.12	12.1	11.4	0.43	10.4	3.7	3.6	1	1	2	3	3	3	0	TATA	element	modulatory	factor	1	DNA	binding
Bacillus_HBL	PF05791.6	gi|257053605|ref|YP_003131438.1|	-	0.12	11.6	1.4	1.2	8.4	0.3	2.3	1	1	1	2	2	2	0	Bacillus	haemolytic	enterotoxin	(HBL)
DUF3450	PF11932.3	gi|257053605|ref|YP_003131438.1|	-	0.13	11.5	4.3	0.73	9.0	0.5	2.2	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3450)
DUF4407	PF14362.1	gi|257053605|ref|YP_003131438.1|	-	0.13	11.1	2.3	0.27	10.1	1.6	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
SlyX	PF04102.7	gi|257053605|ref|YP_003131438.1|	-	0.14	12.5	9.5	0.11	12.9	0.5	3.8	1	1	3	4	4	4	0	SlyX
WXG100	PF06013.7	gi|257053605|ref|YP_003131438.1|	-	0.15	12.1	2.6	13	5.9	0.0	3.4	1	1	3	4	4	3	0	Proteins	of	100	residues	with	WXG
DUF641	PF04859.7	gi|257053605|ref|YP_003131438.1|	-	0.15	11.7	0.6	11	5.7	0.1	2.4	1	1	1	2	2	2	0	Plant	protein	of	unknown	function	(DUF641)
Syntaxin	PF00804.20	gi|257053605|ref|YP_003131438.1|	-	0.16	12.1	6.3	4.4	7.5	2.4	3.0	1	1	1	2	2	2	0	Syntaxin
Allexi_40kDa	PF05549.6	gi|257053605|ref|YP_003131438.1|	-	0.16	11.2	0.2	0.27	10.4	0.2	1.4	1	0	0	1	1	1	0	Allexivirus	40kDa	protein
Prefoldin_2	PF01920.15	gi|257053605|ref|YP_003131438.1|	-	0.17	11.6	7.1	5.1	6.9	0.5	3.9	1	1	2	3	3	3	0	Prefoldin	subunit
Syntaxin_2	PF14523.1	gi|257053605|ref|YP_003131438.1|	-	0.18	11.8	0.2	5.1	7.1	0.0	2.6	1	1	1	2	2	2	0	Syntaxin-like	protein
HALZ	PF02183.13	gi|257053605|ref|YP_003131438.1|	-	0.19	11.4	3.7	0.45	10.2	0.1	3.0	3	0	0	3	3	3	0	Homeobox	associated	leucine	zipper
ISG65-75	PF11727.3	gi|257053605|ref|YP_003131438.1|	-	0.22	10.5	1.3	0.4	9.6	0.9	1.5	1	0	0	1	1	1	0	Invariant	surface	glycoprotein
DivIVA	PF05103.8	gi|257053605|ref|YP_003131438.1|	-	0.23	11.5	5.9	0.2	11.7	1.4	2.7	2	1	0	2	2	1	0	DivIVA	protein
Fib_alpha	PF08702.5	gi|257053605|ref|YP_003131438.1|	-	0.23	11.5	0.6	1.7	8.7	0.2	2.2	1	1	1	2	2	2	0	Fibrinogen	alpha/beta	chain	family
Occludin_ELL	PF07303.8	gi|257053605|ref|YP_003131438.1|	-	0.24	12.1	2.3	12	6.6	0.1	3.4	1	1	3	4	4	4	0	Occludin	homology	domain
Rep_4	PF05797.6	gi|257053605|ref|YP_003131438.1|	-	0.27	9.9	3.5	0.11	11.2	0.4	1.7	1	1	0	2	2	2	0	Yeast	trans-acting	factor	(REP1/REP2)
DUF2730	PF10805.3	gi|257053605|ref|YP_003131438.1|	-	0.35	10.6	3.0	1.3	8.7	0.5	2.7	2	1	1	3	3	2	0	Protein	of	unknown	function	(DUF2730)
Med4	PF10018.4	gi|257053605|ref|YP_003131438.1|	-	0.38	10.1	2.7	3.9	6.8	0.4	2.5	1	1	1	2	2	2	0	Vitamin-D-receptor	interacting	Mediator	subunit	4
Flagellin_N	PF00669.15	gi|257053605|ref|YP_003131438.1|	-	0.53	10.0	3.2	6.3	6.5	0.8	2.6	1	1	2	3	3	3	0	Bacterial	flagellin	N-terminal	helical	region
DUF4140	PF13600.1	gi|257053605|ref|YP_003131438.1|	-	0.62	10.5	10.8	1.9	8.9	1.3	4.4	2	1	2	4	4	3	0	N-terminal	domain	of	unknown	function	(DUF4140)
Hemerythrin	PF01814.18	gi|257053605|ref|YP_003131438.1|	-	0.69	10.0	5.7	8.6	6.5	0.4	2.5	1	1	1	2	2	2	0	Hemerythrin	HHE	cation	binding	domain
LUC7	PF03194.10	gi|257053605|ref|YP_003131438.1|	-	0.71	9.3	3.1	1.2	8.5	2.1	1.4	1	0	0	1	1	1	0	LUC7	N_terminus
EMP24_GP25L	PF01105.19	gi|257053605|ref|YP_003131438.1|	-	0.71	9.5	3.0	1.9	8.1	1.5	2.3	1	1	1	2	2	1	0	emp24/gp25L/p24	family/GOLD
CorA	PF01544.13	gi|257053605|ref|YP_003131438.1|	-	0.8	8.6	4.6	6.6	5.6	1.2	2.6	1	1	0	2	2	2	0	CorA-like	Mg2+	transporter	protein
DUF848	PF05852.6	gi|257053605|ref|YP_003131438.1|	-	0.91	9.3	11.0	2.2	8.1	4.1	2.5	1	1	1	2	2	2	0	Gammaherpesvirus	protein	of	unknown	function	(DUF848)
V_ATPase_I	PF01496.14	gi|257053605|ref|YP_003131438.1|	-	1.2	6.9	4.6	3.7	5.2	3.2	1.7	1	1	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
Syntaxin-6_N	PF09177.6	gi|257053605|ref|YP_003131438.1|	-	1.3	9.4	6.8	4.3	7.8	2.9	2.8	1	1	1	2	2	2	0	Syntaxin	6,	N-terminal
DUF4164	PF13747.1	gi|257053605|ref|YP_003131438.1|	-	1.4	9.1	10.3	1.2	9.3	3.2	2.8	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4164)
LPP	PF04728.8	gi|257053605|ref|YP_003131438.1|	-	1.5	8.7	10.5	0.72	9.6	0.4	4.1	3	1	2	5	5	3	0	Lipoprotein	leucine-zipper
ERM	PF00769.14	gi|257053605|ref|YP_003131438.1|	-	2.6	7.5	11.1	0.38	10.2	3.7	2.2	2	0	0	2	2	2	0	Ezrin/radixin/moesin	family
Cep57_CLD_2	PF14197.1	gi|257053605|ref|YP_003131438.1|	-	4.6	7.2	9.1	3	7.8	3.0	2.9	1	1	2	3	3	3	0	Centrosome	localisation	domain	of	PPC89
CCDC-167	PF15188.1	gi|257053605|ref|YP_003131438.1|	-	6.3	6.8	7.6	5.8	6.9	2.0	3.0	1	1	0	2	2	2	0	Coiled-coil	domain-containing	protein	167
DUF2205	PF10224.4	gi|257053605|ref|YP_003131438.1|	-	6.9	6.3	7.0	11	5.7	0.7	3.0	1	1	3	4	4	2	0	Predicted	coiled-coil	protein	(DUF2205)
Tmemb_cc2	PF10267.4	gi|257053605|ref|YP_003131438.1|	-	7.2	5.0	9.0	5.1	5.5	0.8	2.1	1	1	1	2	2	2	0	Predicted	transmembrane	and	coiled-coil	2	protein
Prismane	PF03063.15	gi|257053606|ref|YP_003131439.1|	-	9.2e-125	416.9	0.0	2.9e-108	362.5	0.0	2.0	1	1	1	2	2	2	2	Prismane/CO	dehydrogenase	family
GST_N_2	PF13409.1	gi|257053607|ref|YP_003131440.1|	-	1.1e-22	79.8	0.1	2.7e-22	78.5	0.0	1.7	2	0	0	2	2	2	1	Glutathione	S-transferase,	N-terminal	domain
GST_C_2	PF13410.1	gi|257053607|ref|YP_003131440.1|	-	2.9e-14	52.7	1.0	5.7e-14	51.7	0.7	1.5	1	0	0	1	1	1	1	Glutathione	S-transferase,	C-terminal	domain
GST_C_3	PF14497.1	gi|257053607|ref|YP_003131440.1|	-	9.8e-09	35.6	0.1	1.8e-08	34.7	0.0	1.5	1	0	0	1	1	1	1	Glutathione	S-transferase,	C-terminal	domain
GST_C	PF00043.20	gi|257053607|ref|YP_003131440.1|	-	7e-08	32.3	0.1	1.6e-07	31.2	0.1	1.6	1	0	0	1	1	1	1	Glutathione	S-transferase,	C-terminal	domain
GST_N_3	PF13417.1	gi|257053607|ref|YP_003131440.1|	-	3.1e-07	30.5	0.0	7.7e-06	26.0	0.0	2.4	1	1	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
Ribosomal_L16	PF00252.13	gi|257053608|ref|YP_003131441.1|	-	2.3e-29	101.8	0.0	2.7e-29	101.5	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L16p/L10e
RimK	PF08443.6	gi|257053609|ref|YP_003131442.1|	-	7.1e-26	90.8	0.0	9.6e-26	90.4	0.0	1.1	1	0	0	1	1	1	1	RimK-like	ATP-grasp	domain
ATP-grasp_4	PF13535.1	gi|257053609|ref|YP_003131442.1|	-	1.8e-16	60.4	0.0	2.5e-16	59.9	0.0	1.2	1	0	0	1	1	1	1	ATP-grasp	domain
GSH-S_ATP	PF02955.11	gi|257053609|ref|YP_003131442.1|	-	2.1e-12	46.5	0.0	3e-12	46.0	0.0	1.2	1	0	0	1	1	1	1	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
ATP-grasp_3	PF02655.9	gi|257053609|ref|YP_003131442.1|	-	2.1e-09	37.4	0.0	3.4e-09	36.7	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
ATPgrasp_Ter	PF15632.1	gi|257053609|ref|YP_003131442.1|	-	2.6e-06	26.4	0.0	8.2e-06	24.7	0.0	1.7	2	0	0	2	2	2	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
ATPgrasp_ST	PF14397.1	gi|257053609|ref|YP_003131442.1|	-	3.6e-05	22.9	0.0	0.0054	15.8	0.0	2.1	2	0	0	2	2	2	2	Sugar-transfer	associated	ATP-grasp
Dala_Dala_lig_C	PF07478.8	gi|257053609|ref|YP_003131442.1|	-	0.00074	18.9	0.0	0.0012	18.2	0.0	1.3	1	0	0	1	1	1	1	D-ala	D-ala	ligase	C-terminus
TTL	PF03133.10	gi|257053609|ref|YP_003131442.1|	-	0.0011	17.9	0.0	0.002	17.1	0.0	1.3	1	0	0	1	1	1	1	Tubulin-tyrosine	ligase	family
CPSase_L_D2	PF02786.12	gi|257053609|ref|YP_003131442.1|	-	0.011	14.9	0.0	0.014	14.6	0.0	1.2	1	0	0	1	1	1	0	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
PPDK_N	PF01326.14	gi|257053609|ref|YP_003131442.1|	-	0.055	12.5	0.0	1	8.3	0.0	2.1	1	1	1	2	2	2	0	Pyruvate	phosphate	dikinase,	PEP/pyruvate	binding	domain
ATP-grasp_5	PF13549.1	gi|257053609|ref|YP_003131442.1|	-	0.092	11.9	0.0	0.16	11.1	0.0	1.3	1	0	0	1	1	1	0	ATP-grasp	domain
FdhE	PF04216.7	gi|257053610|ref|YP_003131443.1|	-	2.1e-05	24.4	1.7	2.3e-05	24.2	1.2	1.0	1	0	0	1	1	1	1	Protein	involved	in	formate	dehydrogenase	formation
TFIIS_C	PF01096.13	gi|257053610|ref|YP_003131443.1|	-	0.00016	21.1	5.1	0.03	13.9	0.8	2.1	2	0	0	2	2	2	2	Transcription	factor	S-II	(TFIIS)
Lar_restr_allev	PF14354.1	gi|257053610|ref|YP_003131443.1|	-	0.00025	21.2	0.9	0.00027	21.1	0.6	1.1	1	0	0	1	1	1	1	Restriction	alleviation	protein	Lar
Zn_Tnp_IS1595	PF12760.2	gi|257053610|ref|YP_003131443.1|	-	0.00027	20.6	1.4	0.00038	20.1	1.0	1.3	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
Ogr_Delta	PF04606.7	gi|257053610|ref|YP_003131443.1|	-	0.00034	20.1	0.5	0.00043	19.8	0.3	1.1	1	0	0	1	1	1	1	Ogr/Delta-like	zinc	finger
UPF0547	PF10571.4	gi|257053610|ref|YP_003131443.1|	-	0.0012	18.5	4.0	0.14	11.9	0.3	2.3	2	0	0	2	2	2	2	Uncharacterised	protein	family	UPF0547
zf-ribbon_3	PF13248.1	gi|257053610|ref|YP_003131443.1|	-	0.0015	17.6	1.5	0.17	11.1	0.0	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
DUF2387	PF09526.5	gi|257053610|ref|YP_003131443.1|	-	0.0018	18.1	0.7	0.0025	17.6	0.5	1.3	1	0	0	1	1	1	1	Probable	metal-binding	protein	(DUF2387)
PhnA_Zn_Ribbon	PF08274.7	gi|257053610|ref|YP_003131443.1|	-	0.0027	17.4	3.0	0.38	10.5	0.2	2.1	2	0	0	2	2	2	2	PhnA	Zinc-Ribbon
OrfB_Zn_ribbon	PF07282.6	gi|257053610|ref|YP_003131443.1|	-	0.004	16.7	1.4	0.0072	15.9	1.0	1.4	1	1	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Zn-ribbon_8	PF09723.5	gi|257053610|ref|YP_003131443.1|	-	0.007	16.3	5.2	0.15	12.0	0.1	2.1	2	0	0	2	2	2	1	Zinc	ribbon	domain
RNA_POL_M_15KD	PF02150.11	gi|257053610|ref|YP_003131443.1|	-	0.011	15.4	2.3	0.073	12.7	0.2	2.1	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
Prim_Zn_Ribbon	PF08273.7	gi|257053610|ref|YP_003131443.1|	-	0.018	15.1	4.6	0.052	13.6	3.2	1.7	1	1	0	1	1	1	0	Zinc-binding	domain	of	primase-helicase
zinc_ribbon_2	PF13240.1	gi|257053610|ref|YP_003131443.1|	-	0.029	13.8	2.5	2.4	7.7	0.0	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
DZR	PF12773.2	gi|257053610|ref|YP_003131443.1|	-	0.029	14.1	1.4	0.062	13.1	1.0	1.6	1	1	0	1	1	1	0	Double	zinc	ribbon
Nudix_N_2	PF14803.1	gi|257053610|ref|YP_003131443.1|	-	0.031	13.9	2.3	0.097	12.3	1.6	1.8	1	1	0	1	1	1	0	Nudix	N-terminal
Cys_rich_KTR	PF14205.1	gi|257053610|ref|YP_003131443.1|	-	0.037	13.4	0.7	0.07	12.5	0.4	1.6	1	1	0	1	1	1	0	Cysteine-rich	KTR
zf-H2C2_2	PF13465.1	gi|257053610|ref|YP_003131443.1|	-	0.038	14.3	1.3	4.4	7.7	0.1	2.1	2	0	0	2	2	2	0	Zinc-finger	double	domain
CpXC	PF14353.1	gi|257053610|ref|YP_003131443.1|	-	0.041	13.8	0.2	2.3	8.2	0.0	2.0	2	0	0	2	2	2	0	CpXC	protein
Cys_rich_CPXG	PF14255.1	gi|257053610|ref|YP_003131443.1|	-	0.042	13.6	2.2	0.067	13.0	1.5	1.3	1	1	0	1	1	1	0	Cysteine-rich	CPXCG
TF_Zn_Ribbon	PF08271.7	gi|257053610|ref|YP_003131443.1|	-	0.062	12.6	4.2	0.78	9.1	2.9	2.2	1	1	0	1	1	1	0	TFIIB	zinc-binding
zf-tcix	PF14952.1	gi|257053610|ref|YP_003131443.1|	-	0.064	12.5	0.3	2.5	7.5	0.0	2.1	2	0	0	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
Desulfoferrod_N	PF06397.7	gi|257053610|ref|YP_003131443.1|	-	0.069	12.5	0.3	4.4	6.7	0.0	2.1	2	0	0	2	2	2	0	Desulfoferrodoxin,	N-terminal	domain
Terminase_GpA	PF05876.7	gi|257053610|ref|YP_003131443.1|	-	0.073	11.4	1.7	0.083	11.2	1.2	1.0	1	0	0	1	1	1	0	Phage	terminase	large	subunit	(GpA)
zf-ISL3	PF14690.1	gi|257053610|ref|YP_003131443.1|	-	0.078	13.0	2.9	0.17	11.9	0.1	2.0	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
DUF4379	PF14311.1	gi|257053610|ref|YP_003131443.1|	-	0.11	12.3	5.1	3	7.7	1.4	2.1	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4379)
Ribosomal_L37e	PF01907.14	gi|257053610|ref|YP_003131443.1|	-	0.14	12.0	1.2	4.7	7.0	0.1	2.1	2	0	0	2	2	2	0	Ribosomal	protein	L37e
zinc_ribbon_5	PF13719.1	gi|257053610|ref|YP_003131443.1|	-	0.14	11.7	3.2	2	8.0	2.2	2.2	1	1	0	1	1	1	0	zinc-ribbon	domain
DUF35_N	PF12172.3	gi|257053610|ref|YP_003131443.1|	-	0.15	11.9	2.7	0.91	9.5	0.3	2.2	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Sgf11	PF08209.6	gi|257053610|ref|YP_003131443.1|	-	0.2	11.0	0.9	11	5.4	0.1	2.1	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
zinc_ribbon_4	PF13717.1	gi|257053610|ref|YP_003131443.1|	-	0.26	11.0	3.7	4.3	7.0	2.5	2.2	1	1	0	1	1	1	0	zinc-ribbon	domain
GATA	PF00320.22	gi|257053610|ref|YP_003131443.1|	-	0.28	10.5	2.0	1.9	7.9	0.2	2.2	2	0	0	2	2	2	0	GATA	zinc	finger
zf-TFIIB	PF13453.1	gi|257053610|ref|YP_003131443.1|	-	0.3	10.3	4.1	1.8	7.7	0.2	1.9	1	1	1	2	2	2	0	Transcription	factor	zinc-finger
zf-NADH-PPase	PF09297.6	gi|257053610|ref|YP_003131443.1|	-	0.3	10.6	3.8	4	7.0	0.4	2.3	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
Rubredoxin	PF00301.15	gi|257053610|ref|YP_003131443.1|	-	0.47	10.3	10.4	3.3	7.6	1.1	2.6	2	1	0	2	2	2	0	Rubredoxin
zf-C2H2_6	PF13912.1	gi|257053610|ref|YP_003131443.1|	-	0.76	9.7	3.6	9.5	6.2	0.1	2.2	2	0	0	2	2	2	0	C2H2-type	zinc	finger
DUF1610	PF07754.6	gi|257053610|ref|YP_003131443.1|	-	0.91	9.7	4.1	7.3	6.8	0.1	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
HSP20	PF00011.16	gi|257053611|ref|YP_003131444.1|	-	6.6e-09	35.5	0.0	3.4e-07	30.0	0.0	2.2	1	1	0	1	1	1	1	Hsp20/alpha	crystallin	family
GvpH	PF05455.6	gi|257053611|ref|YP_003131444.1|	-	2.2e-06	27.4	0.5	2.8e-06	27.0	0.4	1.2	1	0	0	1	1	1	1	GvpH
PIH1	PF08190.7	gi|257053611|ref|YP_003131444.1|	-	0.035	13.5	0.0	0.057	12.8	0.0	1.2	1	1	0	1	1	1	0	pre-RNA	processing	PIH1/Nop17
Gp_dh_N	PF00044.19	gi|257053612|ref|YP_003131445.1|	-	1.1e-52	178.0	0.0	1.6e-52	177.4	0.0	1.3	1	0	0	1	1	1	1	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
Gp_dh_C	PF02800.15	gi|257053612|ref|YP_003131445.1|	-	2.6e-50	169.9	0.0	3.6e-50	169.4	0.0	1.2	1	0	0	1	1	1	1	Glyceraldehyde	3-phosphate	dehydrogenase,	C-terminal	domain
DapB_N	PF01113.15	gi|257053612|ref|YP_003131445.1|	-	0.0087	15.9	0.1	0.044	13.6	0.0	2.3	3	0	0	3	3	3	1	Dihydrodipicolinate	reductase,	N-terminus
PGK	PF00162.14	gi|257053613|ref|YP_003131446.1|	-	5.1e-109	364.3	0.0	6.1e-109	364.0	0.0	1.0	1	0	0	1	1	1	1	Phosphoglycerate	kinase
DUF1255	PF06865.6	gi|257053613|ref|YP_003131446.1|	-	0.14	12.4	0.0	0.31	11.3	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1255)
ISG65-75	PF11727.3	gi|257053614|ref|YP_003131447.1|	-	0.29	10.1	1.5	0.4	9.6	1.0	1.2	1	0	0	1	1	1	0	Invariant	surface	glycoprotein
DUF760	PF05542.6	gi|257053615|ref|YP_003131448.1|	-	0.008	16.3	0.1	0.23	11.6	0.0	2.6	3	0	0	3	3	3	1	Protein	of	unknown	function	(DUF760)
DUF4065	PF13274.1	gi|257053615|ref|YP_003131448.1|	-	0.11	13.1	7.5	0.26	12.0	0.4	2.8	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF4065)
ApoLp-III	PF07464.6	gi|257053615|ref|YP_003131448.1|	-	0.12	12.3	1.9	3.1	7.7	0.1	2.3	2	0	0	2	2	2	0	Apolipophorin-III	precursor	(apoLp-III)
TrmB	PF01978.14	gi|257053616|ref|YP_003131449.1|	-	6.4e-19	67.4	0.2	2.2e-17	62.5	0.0	2.3	1	1	1	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|257053616|ref|YP_003131449.1|	-	0.00038	20.0	0.0	0.0016	18.0	0.0	2.1	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.5	gi|257053616|ref|YP_003131449.1|	-	0.00067	19.1	0.0	0.0019	17.7	0.0	1.8	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_27	PF13463.1	gi|257053616|ref|YP_003131449.1|	-	0.056	13.7	0.1	0.28	11.5	0.0	2.2	1	1	2	3	3	3	0	Winged	helix	DNA-binding	domain
DUF2250	PF10007.4	gi|257053616|ref|YP_003131449.1|	-	0.084	12.7	0.0	0.21	11.5	0.0	1.6	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
MMPL	PF03176.10	gi|257053617|ref|YP_003131450.1|	-	5.7e-31	107.4	45.6	1.5e-20	73.2	13.5	2.7	2	1	0	2	2	2	2	MMPL	family
Sterol-sensing	PF12349.3	gi|257053617|ref|YP_003131450.1|	-	1.2e-13	50.7	14.7	4.4e-08	32.7	1.4	2.9	2	1	0	2	2	2	2	Sterol-sensing	domain	of	SREBP	cleavage-activation
Patched	PF02460.13	gi|257053617|ref|YP_003131450.1|	-	4.4e-11	41.4	13.2	3.3e-08	31.9	2.9	2.2	2	0	0	2	2	2	2	Patched	family
ACR_tran	PF00873.14	gi|257053617|ref|YP_003131450.1|	-	0.0046	14.4	21.4	0.069	10.5	6.2	2.1	2	0	0	2	2	2	2	AcrB/AcrD/AcrF	family
Phlebovirus_G2	PF07245.6	gi|257053617|ref|YP_003131450.1|	-	1	7.5	2.2	1.7	6.8	1.5	1.3	1	0	0	1	1	1	0	Phlebovirus	glycoprotein	G2
UPF0175	PF03683.8	gi|257053618|ref|YP_003131451.1|	-	3.3e-16	58.5	0.4	3.3e-16	58.5	0.3	1.5	2	0	0	2	2	2	1	Uncharacterised	protein	family	(UPF0175)
RHH_1	PF01402.16	gi|257053618|ref|YP_003131451.1|	-	0.00026	20.7	1.0	0.00051	19.8	0.7	1.5	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
DUF3368	PF11848.3	gi|257053619|ref|YP_003131452.1|	-	9.7e-10	37.8	0.0	2.3e-09	36.6	0.0	1.7	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF3368)
PIN	PF01850.16	gi|257053619|ref|YP_003131452.1|	-	0.1	12.9	2.0	0.13	12.5	0.7	1.7	2	0	0	2	2	2	0	PIN	domain
Metallophos_2	PF12850.2	gi|257053620|ref|YP_003131453.1|	-	6.1e-32	110.6	0.1	6.9e-32	110.4	0.1	1.0	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.23	gi|257053620|ref|YP_003131453.1|	-	3.9e-06	26.3	3.3	9.7e-05	21.8	2.3	2.5	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Peptidase_M29	PF02073.10	gi|257053621|ref|YP_003131454.1|	-	2.5e-18	66.0	0.0	1.6e-16	60.1	0.1	2.2	2	0	0	2	2	2	2	Thermophilic	metalloprotease	(M29)
Ketoacyl-synt_C	PF02801.17	gi|257053621|ref|YP_003131454.1|	-	0.12	12.2	0.5	0.25	11.1	0.1	1.7	2	0	0	2	2	2	0	Beta-ketoacyl	synthase,	C-terminal	domain
KduI	PF04962.7	gi|257053622|ref|YP_003131455.1|	-	0.00025	20.2	0.9	0.00059	18.9	0.2	1.7	1	1	1	2	2	2	1	KduI/IolB	family
DUF2387	PF09526.5	gi|257053622|ref|YP_003131455.1|	-	0.0021	17.9	0.9	0.0049	16.7	0.6	1.6	1	0	0	1	1	1	1	Probable	metal-binding	protein	(DUF2387)
Lar_restr_allev	PF14354.1	gi|257053622|ref|YP_003131455.1|	-	0.045	14.0	0.7	0.11	12.8	0.5	1.6	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
zinc_ribbon_5	PF13719.1	gi|257053622|ref|YP_003131455.1|	-	0.055	13.0	1.1	0.12	11.9	0.8	1.6	1	1	0	1	1	1	0	zinc-ribbon	domain
GidB	PF02527.10	gi|257053622|ref|YP_003131455.1|	-	0.11	11.6	0.0	0.16	11.1	0.0	1.2	1	0	0	1	1	1	0	rRNA	small	subunit	methyltransferase	G
zinc_ribbon_4	PF13717.1	gi|257053622|ref|YP_003131455.1|	-	0.23	11.1	1.6	0.63	9.7	1.1	1.8	1	1	0	1	1	1	0	zinc-ribbon	domain
PCMT	PF01135.14	gi|257053623|ref|YP_003131456.1|	-	2e-65	220.2	0.0	2.4e-65	219.9	0.0	1.1	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_18	PF12847.2	gi|257053623|ref|YP_003131456.1|	-	9.5e-09	35.8	0.1	2e-08	34.7	0.0	1.5	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|257053623|ref|YP_003131456.1|	-	2.3e-06	27.2	0.0	3.6e-06	26.6	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|257053623|ref|YP_003131456.1|	-	4.7e-06	26.6	0.3	3.9e-05	23.6	0.2	2.1	1	1	0	1	1	1	1	Methyltransferase	domain
GCD14	PF08704.5	gi|257053623|ref|YP_003131456.1|	-	2.7e-05	23.7	0.0	3.8e-05	23.2	0.0	1.1	1	0	0	1	1	1	1	tRNA	methyltransferase	complex	GCD14	subunit
RrnaAD	PF00398.15	gi|257053623|ref|YP_003131456.1|	-	4.6e-05	22.5	0.0	7.2e-05	21.9	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
CMAS	PF02353.15	gi|257053623|ref|YP_003131456.1|	-	0.00065	18.8	0.0	0.0009	18.3	0.0	1.1	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_4	PF02390.12	gi|257053623|ref|YP_003131456.1|	-	0.0057	15.7	0.0	0.0085	15.1	0.0	1.2	1	0	0	1	1	1	1	Putative	methyltransferase
MTS	PF05175.9	gi|257053623|ref|YP_003131456.1|	-	0.0087	15.4	0.0	0.013	14.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_24	PF13578.1	gi|257053623|ref|YP_003131456.1|	-	0.013	16.3	0.1	0.038	14.8	0.1	1.8	1	1	0	1	1	1	0	Methyltransferase	domain
Fibrillarin	PF01269.12	gi|257053623|ref|YP_003131456.1|	-	0.041	12.7	0.0	0.061	12.2	0.0	1.1	1	0	0	1	1	1	0	Fibrillarin
Methyltransf_12	PF08242.7	gi|257053623|ref|YP_003131456.1|	-	0.077	13.4	0.0	0.14	12.6	0.0	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
DUF2292	PF10055.4	gi|257053623|ref|YP_003131456.1|	-	0.13	11.6	0.0	0.25	10.6	0.0	1.5	1	0	0	1	1	1	0	Uncharacterized	small	protein	(DUF2292)
PCMT	PF01135.14	gi|257053624|ref|YP_003131457.1|	-	4.3e-36	124.4	0.0	5.7e-36	124.0	0.0	1.1	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_18	PF12847.2	gi|257053624|ref|YP_003131457.1|	-	2.8e-07	31.1	0.0	5.2e-07	30.2	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|257053624|ref|YP_003131457.1|	-	5.7e-06	26.3	1.0	3.2e-05	23.9	0.7	2.1	1	1	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|257053624|ref|YP_003131457.1|	-	9.8e-06	25.0	0.0	1.5e-05	24.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_31	PF13847.1	gi|257053624|ref|YP_003131457.1|	-	0.00014	21.4	0.0	0.00017	21.2	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
PrmA	PF06325.8	gi|257053624|ref|YP_003131457.1|	-	0.015	14.4	0.0	0.024	13.7	0.0	1.3	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_11	PF08241.7	gi|257053624|ref|YP_003131457.1|	-	0.016	15.6	0.0	0.032	14.7	0.0	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
Fibrillarin	PF01269.12	gi|257053624|ref|YP_003131457.1|	-	0.032	13.1	0.0	0.045	12.6	0.0	1.2	1	0	0	1	1	1	0	Fibrillarin
Met_10	PF02475.11	gi|257053624|ref|YP_003131457.1|	-	0.045	13.3	0.0	0.059	12.9	0.0	1.2	1	0	0	1	1	1	0	Met-10+	like-protein
RrnaAD	PF00398.15	gi|257053624|ref|YP_003131457.1|	-	0.049	12.6	0.0	0.071	12.1	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
Methyltransf_12	PF08242.7	gi|257053624|ref|YP_003131457.1|	-	0.11	13.0	0.0	0.2	12.1	0.0	1.6	1	0	0	1	1	1	0	Methyltransferase	domain
OrfB_Zn_ribbon	PF07282.6	gi|257053625|ref|YP_003131458.1|	-	3.6e-23	81.0	0.3	1.1e-22	79.4	0.2	1.9	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.14	gi|257053625|ref|YP_003131458.1|	-	3.2e-14	52.8	0.0	4.8e-14	52.3	0.0	1.3	1	0	0	1	1	1	1	Probable	transposase
DZR	PF12773.2	gi|257053625|ref|YP_003131458.1|	-	0.19	11.5	5.7	0.037	13.8	1.5	1.6	2	0	0	2	2	2	0	Double	zinc	ribbon
BssC_TutF	PF08201.6	gi|257053625|ref|YP_003131458.1|	-	0.39	10.2	2.7	2.8	7.4	0.0	2.5	2	0	0	2	2	2	0	BssC/TutF	protein
zf-ribbon_3	PF13248.1	gi|257053625|ref|YP_003131458.1|	-	1.6	8.0	3.7	20	4.5	2.6	2.4	1	1	1	2	2	2	0	zinc-ribbon	domain
CRCB	PF02537.10	gi|257053626|ref|YP_003131459.1|	-	2e-21	76.0	10.7	2.3e-21	75.8	7.4	1.0	1	0	0	1	1	1	1	CrcB-like	protein
DUF2530	PF10745.4	gi|257053626|ref|YP_003131459.1|	-	0.19	11.7	2.7	0.36	10.8	0.2	2.0	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2530)
CRCB	PF02537.10	gi|257053627|ref|YP_003131460.1|	-	2.8e-26	91.7	6.9	3.4e-26	91.4	4.8	1.1	1	0	0	1	1	1	1	CrcB-like	protein
DUF202	PF02656.10	gi|257053627|ref|YP_003131460.1|	-	0.82	9.9	5.0	2.8	8.2	3.5	2.0	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF202)
HSP20	PF00011.16	gi|257053628|ref|YP_003131461.1|	-	7.1e-18	64.3	0.0	9.2e-18	63.9	0.0	1.2	1	0	0	1	1	1	1	Hsp20/alpha	crystallin	family
PIH1	PF08190.7	gi|257053628|ref|YP_003131461.1|	-	0.049	13.0	0.0	0.056	12.8	0.0	1.0	1	0	0	1	1	1	0	pre-RNA	processing	PIH1/Nop17
PGA_cap	PF09587.5	gi|257053629|ref|YP_003131462.1|	-	1.8e-67	227.3	0.0	2.2e-67	227.0	0.0	1.1	1	0	0	1	1	1	1	Bacterial	capsule	synthesis	protein	PGA_cap
GAF	PF01590.21	gi|257053630|ref|YP_003131463.1|	-	1.5e-07	31.6	0.0	3e-07	30.6	0.0	1.5	1	0	0	1	1	1	1	GAF	domain
GAF_2	PF13185.1	gi|257053630|ref|YP_003131463.1|	-	6.9e-06	26.6	0.1	2.1e-05	25.0	0.0	1.8	2	0	0	2	2	2	1	GAF	domain
GAF_3	PF13492.1	gi|257053630|ref|YP_003131463.1|	-	9e-06	25.8	0.0	1.9e-05	24.7	0.0	1.4	1	0	0	1	1	1	1	GAF	domain
Response_reg	PF00072.19	gi|257053630|ref|YP_003131463.1|	-	0.00071	19.5	0.4	0.0021	18.0	0.3	1.8	1	0	0	1	1	1	1	Response	regulator	receiver	domain
OKR_DC_1_N	PF03709.10	gi|257053630|ref|YP_003131463.1|	-	0.0096	15.9	0.3	0.022	14.8	0.2	1.6	1	0	0	1	1	1	1	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
ABC-3	PF00950.12	gi|257053632|ref|YP_003131465.1|	-	5e-59	199.6	41.3	6.9e-59	199.2	28.6	1.2	1	0	0	1	1	1	1	ABC	3	transport	family
FecCD	PF01032.13	gi|257053632|ref|YP_003131465.1|	-	0.00045	19.1	40.6	0.002	16.9	28.2	2.1	1	1	0	1	1	1	1	FecCD	transport	family
DUF2407_C	PF13373.1	gi|257053632|ref|YP_003131465.1|	-	0.048	13.5	0.2	0.048	13.5	0.1	1.9	2	0	0	2	2	2	0	DUF2407	C-terminal	domain
ABC_tran	PF00005.22	gi|257053633|ref|YP_003131466.1|	-	1.2e-29	103.3	0.0	1.7e-29	102.8	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|257053633|ref|YP_003131466.1|	-	9.4e-12	45.4	0.0	8e-06	26.0	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
AAA_29	PF13555.1	gi|257053633|ref|YP_003131466.1|	-	1.5e-05	24.3	0.0	3.1e-05	23.4	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.1	gi|257053633|ref|YP_003131466.1|	-	1.5e-05	25.0	0.4	4.1e-05	23.6	0.3	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
SMC_N	PF02463.14	gi|257053633|ref|YP_003131466.1|	-	3.3e-05	23.2	0.1	0.00078	18.7	0.0	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
ABC_ATPase	PF09818.4	gi|257053633|ref|YP_003131466.1|	-	6.7e-05	21.6	1.1	0.11	11.0	0.1	3.1	2	1	0	2	2	2	2	Predicted	ATPase	of	the	ABC	class
AAA_30	PF13604.1	gi|257053633|ref|YP_003131466.1|	-	0.00037	20.1	0.1	0.0044	16.6	0.0	2.4	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|257053633|ref|YP_003131466.1|	-	0.00044	20.3	0.1	0.015	15.4	0.1	2.4	1	1	0	1	1	1	1	AAA	domain
AAA_23	PF13476.1	gi|257053633|ref|YP_003131466.1|	-	0.00053	20.3	0.0	0.00075	19.8	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_19	PF13245.1	gi|257053633|ref|YP_003131466.1|	-	0.001	18.7	0.0	0.0037	16.9	0.0	2.0	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_10	PF12846.2	gi|257053633|ref|YP_003131466.1|	-	0.0012	18.3	0.3	0.0025	17.3	0.2	1.7	1	1	0	1	1	1	1	AAA-like	domain
SbcCD_C	PF13558.1	gi|257053633|ref|YP_003131466.1|	-	0.0013	18.6	0.9	0.036	13.9	0.6	2.8	1	1	1	2	2	2	1	Putative	exonuclease	SbcCD,	C	subunit
NTPase_1	PF03266.10	gi|257053633|ref|YP_003131466.1|	-	0.0021	17.7	0.0	0.014	15.1	0.0	2.3	2	1	0	2	2	2	1	NTPase
AAA_17	PF13207.1	gi|257053633|ref|YP_003131466.1|	-	0.0051	17.6	0.4	0.041	14.7	0.0	2.3	2	1	0	2	2	2	1	AAA	domain
AAA_25	PF13481.1	gi|257053633|ref|YP_003131466.1|	-	0.0077	15.6	0.2	0.056	12.8	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_33	PF13671.1	gi|257053633|ref|YP_003131466.1|	-	0.0084	15.9	0.0	0.088	12.6	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
MobB	PF03205.9	gi|257053633|ref|YP_003131466.1|	-	0.01	15.5	0.0	0.021	14.5	0.0	1.7	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Mg_chelatase	PF01078.16	gi|257053633|ref|YP_003131466.1|	-	0.013	14.6	0.2	0.062	12.4	0.1	1.9	1	1	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
NACHT	PF05729.7	gi|257053633|ref|YP_003131466.1|	-	0.017	14.7	0.0	0.029	14.0	0.0	1.3	1	0	0	1	1	1	0	NACHT	domain
MutS_V	PF00488.16	gi|257053633|ref|YP_003131466.1|	-	0.045	13.1	0.0	0.11	11.9	0.0	1.5	2	0	0	2	2	2	0	MutS	domain	V
FtsK_SpoIIIE	PF01580.13	gi|257053633|ref|YP_003131466.1|	-	0.048	13.1	0.1	0.12	11.7	0.1	1.6	1	1	1	2	2	2	0	FtsK/SpoIIIE	family
Peripla_BP_4	PF13407.1	gi|257053633|ref|YP_003131466.1|	-	0.051	12.9	0.0	0.087	12.1	0.0	1.3	1	0	0	1	1	1	0	Periplasmic	binding	protein	domain
AAA_14	PF13173.1	gi|257053633|ref|YP_003131466.1|	-	0.063	13.1	0.0	0.16	11.8	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
MMR_HSR1	PF01926.18	gi|257053633|ref|YP_003131466.1|	-	0.085	12.8	0.0	0.19	11.6	0.0	2.0	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
AFG1_ATPase	PF03969.11	gi|257053633|ref|YP_003131466.1|	-	0.086	11.6	0.2	1.1	7.9	0.1	2.0	2	0	0	2	2	2	0	AFG1-like	ATPase
DUF258	PF03193.11	gi|257053633|ref|YP_003131466.1|	-	0.097	11.8	0.0	0.14	11.2	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
DUF87	PF01935.12	gi|257053633|ref|YP_003131466.1|	-	0.11	12.3	0.0	0.18	11.6	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF87
AAA_5	PF07728.9	gi|257053633|ref|YP_003131466.1|	-	0.11	12.1	0.0	0.3	10.7	0.0	1.7	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
NB-ARC	PF00931.17	gi|257053633|ref|YP_003131466.1|	-	0.16	10.8	0.0	0.27	10.0	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
TroA	PF01297.12	gi|257053634|ref|YP_003131467.1|	-	1.9e-42	145.3	0.0	2.4e-42	144.9	0.0	1.2	1	0	0	1	1	1	1	Periplasmic	solute	binding	protein	family
TAT_signal	PF10518.4	gi|257053634|ref|YP_003131467.1|	-	0.016	15.1	5.3	0.037	14.0	3.7	1.6	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
RTC	PF01137.16	gi|257053635|ref|YP_003131468.1|	-	5.2e-62	208.6	0.0	6e-62	208.3	0.0	1.0	1	0	0	1	1	1	1	RNA	3'-terminal	phosphate	cyclase
RTC_insert	PF05189.8	gi|257053635|ref|YP_003131468.1|	-	7.4e-16	58.0	0.3	1.3e-15	57.2	0.2	1.4	1	0	0	1	1	1	1	RNA	3'-terminal	phosphate	cyclase	(RTC),	insert	domain
CelD_N	PF02927.9	gi|257053635|ref|YP_003131468.1|	-	0.036	14.3	0.0	0.083	13.1	0.0	1.7	1	1	0	1	1	1	0	N-terminal	ig-like	domain	of	cellulase
Aldo_ket_red	PF00248.16	gi|257053636|ref|YP_003131469.1|	-	7.2e-71	238.3	0.0	8.5e-71	238.0	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
MF_alpha_N	PF05436.6	gi|257053636|ref|YP_003131469.1|	-	0.15	11.8	0.1	0.28	10.9	0.0	1.4	1	0	0	1	1	1	0	Mating	factor	alpha	precursor	N-terminus
DS	PF01916.12	gi|257053637|ref|YP_003131470.1|	-	3.3e-77	259.5	0.0	3.9e-77	259.3	0.0	1.0	1	0	0	1	1	1	1	Deoxyhypusine	synthase
AA_kinase	PF00696.23	gi|257053637|ref|YP_003131470.1|	-	0.0038	16.7	0.2	0.0076	15.8	0.0	1.5	2	0	0	2	2	2	1	Amino	acid	kinase	family
HTH_11	PF08279.7	gi|257053637|ref|YP_003131470.1|	-	0.16	11.6	0.0	33	4.2	0.0	2.9	3	0	0	3	3	3	0	HTH	domain
SprT-like	PF10263.4	gi|257053638|ref|YP_003131471.1|	-	1.4e-09	37.8	0.0	1.7e-09	37.4	0.0	1.3	1	0	0	1	1	1	1	SprT-like	family
NIF3	PF01784.13	gi|257053639|ref|YP_003131472.1|	-	1e-50	172.5	0.0	1.2e-50	172.3	0.0	1.0	1	0	0	1	1	1	1	NIF3	(NGG1p	interacting	factor	3)
AP_endonuc_2	PF01261.19	gi|257053639|ref|YP_003131472.1|	-	0.0098	15.2	0.7	0.03	13.5	0.1	2.0	2	1	0	2	2	2	1	Xylose	isomerase-like	TIM	barrel
Usp	PF00582.21	gi|257053639|ref|YP_003131472.1|	-	0.088	12.9	1.3	12	6.0	0.1	2.3	2	0	0	2	2	2	0	Universal	stress	protein	family
Arginase	PF00491.16	gi|257053642|ref|YP_003131475.1|	-	3.2e-52	177.5	4.0	3.7e-52	177.3	2.8	1.0	1	0	0	1	1	1	1	Arginase	family
eIF-5a	PF01287.15	gi|257053643|ref|YP_003131476.1|	-	2.6e-06	27.2	0.3	4.7e-06	26.4	0.2	1.5	1	0	0	1	1	1	1	Eukaryotic	elongation	factor	5A	hypusine,	DNA-binding	OB	fold
EFP_N	PF08207.7	gi|257053643|ref|YP_003131476.1|	-	0.0027	17.5	0.0	0.009	15.8	0.0	1.8	2	0	0	2	2	2	1	Elongation	factor	P	(EF-P)	KOW-like	domain
EFP	PF01132.15	gi|257053643|ref|YP_003131476.1|	-	0.081	12.6	1.4	0.48	10.1	0.1	2.2	2	0	0	2	2	2	0	Elongation	factor	P	(EF-P)	OB	domain
ABC1	PF03109.11	gi|257053644|ref|YP_003131477.1|	-	2.9e-28	98.2	0.0	2.3e-27	95.3	0.0	2.2	2	0	0	2	2	2	1	ABC1	family
APH	PF01636.18	gi|257053644|ref|YP_003131477.1|	-	1.3e-05	25.0	0.5	0.00053	19.7	0.3	2.8	1	1	0	1	1	1	1	Phosphotransferase	enzyme	family
RIO1	PF01163.17	gi|257053644|ref|YP_003131477.1|	-	0.00025	20.4	0.0	0.00059	19.2	0.0	1.6	2	0	0	2	2	2	1	RIO1	family
WaaY	PF06176.6	gi|257053644|ref|YP_003131477.1|	-	0.0018	17.5	0.0	0.0035	16.5	0.0	1.4	1	0	0	1	1	1	1	Lipopolysaccharide	core	biosynthesis	protein	(WaaY)
Pkinase	PF00069.20	gi|257053644|ref|YP_003131477.1|	-	0.0061	15.7	0.0	0.017	14.2	0.0	1.7	2	0	0	2	2	2	1	Protein	kinase	domain
DUF2951	PF11166.3	gi|257053644|ref|YP_003131477.1|	-	0.035	13.9	0.0	0.093	12.5	0.0	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2951)
HSP20	PF00011.16	gi|257053645|ref|YP_003131478.1|	-	2.8e-11	43.1	0.0	3.2e-11	42.9	0.0	1.0	1	0	0	1	1	1	1	Hsp20/alpha	crystallin	family
HEAT_2	PF13646.1	gi|257053646|ref|YP_003131479.1|	-	2.3e-05	24.5	13.5	0.81	10.0	0.0	4.6	1	1	3	4	4	4	3	HEAT	repeats
HEAT_EZ	PF13513.1	gi|257053646|ref|YP_003131479.1|	-	3.5e-05	24.1	6.8	2	9.0	0.1	4.7	4	0	0	4	4	4	3	HEAT-like	repeat
Adaptin_N	PF01602.15	gi|257053646|ref|YP_003131479.1|	-	0.00011	20.6	0.0	0.0095	14.2	0.0	2.1	2	0	0	2	2	2	2	Adaptin	N	terminal	region
HEAT	PF02985.17	gi|257053646|ref|YP_003131479.1|	-	0.44	10.7	8.5	7.7	6.8	0.0	5.1	5	1	1	6	6	6	0	HEAT	repeat
HEAT_PBS	PF03130.11	gi|257053646|ref|YP_003131479.1|	-	0.96	10.1	5.8	47	4.8	0.1	3.8	3	0	0	3	3	3	0	PBS	lyase	HEAT-like	repeat
SBP_bac_5	PF00496.17	gi|257053647|ref|YP_003131480.1|	-	4.1e-39	134.4	10.4	5.8e-39	133.9	7.2	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
TAT_signal	PF10518.4	gi|257053647|ref|YP_003131480.1|	-	0.0004	20.1	0.4	0.0011	18.7	0.3	1.8	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
BPD_transp_1	PF00528.17	gi|257053648|ref|YP_003131481.1|	-	2.5e-36	124.9	15.1	2.5e-36	124.9	10.5	2.1	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
Epiglycanin_C	PF14654.1	gi|257053648|ref|YP_003131481.1|	-	7.7	6.5	8.7	5.4	7.0	0.8	2.9	2	1	1	3	3	3	0	Mucin,	catalytic,	TM	and	cytoplasmic	tail	region
BPD_transp_1	PF00528.17	gi|257053649|ref|YP_003131482.1|	-	1.3e-25	89.9	14.4	1.3e-25	89.9	10.0	1.8	2	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.2	gi|257053649|ref|YP_003131482.1|	-	0.0062	15.8	1.1	0.029	13.7	0.7	2.2	1	0	0	1	1	1	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
ABC_tran	PF00005.22	gi|257053650|ref|YP_003131483.1|	-	8.3e-55	184.8	0.0	4e-28	98.4	0.0	2.2	2	0	0	2	2	2	2	ABC	transporter
oligo_HPY	PF08352.7	gi|257053650|ref|YP_003131483.1|	-	2.1e-35	120.8	3.5	6.7e-19	68.0	0.1	2.6	2	0	0	2	2	2	2	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.1	gi|257053650|ref|YP_003131483.1|	-	1.8e-23	83.9	2.3	1.3e-08	35.1	0.0	4.1	2	2	2	4	4	4	4	AAA	domain
AAA_22	PF13401.1	gi|257053650|ref|YP_003131483.1|	-	6.7e-09	35.9	8.1	0.0019	18.3	0.3	3.9	2	2	0	2	2	2	2	AAA	domain
AAA_16	PF13191.1	gi|257053650|ref|YP_003131483.1|	-	1.9e-08	34.4	0.6	0.00024	21.1	0.0	2.7	2	1	0	2	2	2	2	AAA	ATPase	domain
AAA_29	PF13555.1	gi|257053650|ref|YP_003131483.1|	-	1.3e-07	30.9	1.2	0.00087	18.7	0.1	2.4	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
DUF258	PF03193.11	gi|257053650|ref|YP_003131483.1|	-	3.4e-07	29.5	0.1	0.0084	15.3	0.0	2.4	2	0	0	2	2	2	2	Protein	of	unknown	function,	DUF258
ABC_ATPase	PF09818.4	gi|257053650|ref|YP_003131483.1|	-	3.9e-07	29.0	2.3	0.019	13.5	0.1	3.9	4	1	0	4	4	4	2	Predicted	ATPase	of	the	ABC	class
AAA_25	PF13481.1	gi|257053650|ref|YP_003131483.1|	-	5.1e-07	29.2	0.0	0.0095	15.3	0.0	3.2	3	0	0	3	3	3	2	AAA	domain
SMC_N	PF02463.14	gi|257053650|ref|YP_003131483.1|	-	1e-06	28.1	7.9	0.041	13.0	0.1	4.1	3	1	0	3	3	3	2	RecF/RecN/SMC	N	terminal	domain
AAA_10	PF12846.2	gi|257053650|ref|YP_003131483.1|	-	2.2e-06	27.3	0.7	0.054	12.9	0.0	3.7	2	2	1	4	4	4	2	AAA-like	domain
NB-ARC	PF00931.17	gi|257053650|ref|YP_003131483.1|	-	5.5e-06	25.4	0.1	0.025	13.4	0.0	2.2	2	0	0	2	2	2	2	NB-ARC	domain
AAA_23	PF13476.1	gi|257053650|ref|YP_003131483.1|	-	8.5e-06	26.2	0.1	0.059	13.6	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
Miro	PF08477.8	gi|257053650|ref|YP_003131483.1|	-	2.2e-05	24.9	0.1	0.08	13.4	0.0	2.4	2	0	0	2	2	2	2	Miro-like	protein
ArgK	PF03308.11	gi|257053650|ref|YP_003131483.1|	-	2.3e-05	23.3	0.5	4.3e-05	22.4	0.0	1.6	2	0	0	2	2	2	1	ArgK	protein
NACHT	PF05729.7	gi|257053650|ref|YP_003131483.1|	-	3.1e-05	23.6	2.0	0.17	11.5	0.1	2.8	3	0	0	3	3	3	2	NACHT	domain
AAA_17	PF13207.1	gi|257053650|ref|YP_003131483.1|	-	6.9e-05	23.6	0.0	0.62	10.9	0.0	3.2	3	0	0	3	3	3	2	AAA	domain
AAA_15	PF13175.1	gi|257053650|ref|YP_003131483.1|	-	8.6e-05	21.7	0.4	2.8	6.9	0.0	3.1	3	0	0	3	3	3	2	AAA	ATPase	domain
MMR_HSR1	PF01926.18	gi|257053650|ref|YP_003131483.1|	-	0.0001	22.2	0.0	0.067	13.1	0.0	2.4	2	0	0	2	2	2	1	50S	ribosome-binding	GTPase
MobB	PF03205.9	gi|257053650|ref|YP_003131483.1|	-	0.00015	21.5	0.3	0.27	10.9	0.0	2.4	2	0	0	2	2	2	2	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
KaiC	PF06745.8	gi|257053650|ref|YP_003131483.1|	-	0.00023	20.3	0.1	0.21	10.6	0.0	2.6	2	0	0	2	2	2	2	KaiC
RNA_helicase	PF00910.17	gi|257053650|ref|YP_003131483.1|	-	0.00039	20.5	0.0	1.3	9.2	0.0	2.4	2	0	0	2	2	2	2	RNA	helicase
PRK	PF00485.13	gi|257053650|ref|YP_003131483.1|	-	0.0004	20.0	0.0	0.36	10.3	0.0	2.3	2	0	0	2	2	2	2	Phosphoribulokinase	/	Uridine	kinase	family
UPF0079	PF02367.12	gi|257053650|ref|YP_003131483.1|	-	0.00042	19.9	0.4	0.67	9.5	0.1	2.3	2	0	0	2	2	2	2	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_33	PF13671.1	gi|257053650|ref|YP_003131483.1|	-	0.0012	18.7	0.0	1	9.2	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
AAA	PF00004.24	gi|257053650|ref|YP_003131483.1|	-	0.0013	18.9	0.0	0.2	11.8	0.0	2.6	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_18	PF13238.1	gi|257053650|ref|YP_003131483.1|	-	0.0013	18.9	0.0	1	9.6	0.0	2.6	2	0	0	2	2	2	1	AAA	domain
AAA_24	PF13479.1	gi|257053650|ref|YP_003131483.1|	-	0.0028	17.2	0.1	0.5	9.9	0.0	2.7	2	0	0	2	2	2	1	AAA	domain
Zeta_toxin	PF06414.7	gi|257053650|ref|YP_003131483.1|	-	0.003	16.6	0.1	2.4	7.2	0.0	2.5	2	0	0	2	2	2	1	Zeta	toxin
Septin	PF00735.13	gi|257053650|ref|YP_003131483.1|	-	0.003	16.6	0.0	2	7.3	0.0	2.2	2	0	0	2	2	2	2	Septin
NTPase_1	PF03266.10	gi|257053650|ref|YP_003131483.1|	-	0.0036	17.0	0.4	1.1	8.9	0.0	2.6	2	0	0	2	2	2	1	NTPase
ATP-synt_ab	PF00006.20	gi|257053650|ref|YP_003131483.1|	-	0.0045	16.5	0.0	0.2	11.1	0.0	2.2	2	0	0	2	2	2	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
T2SE	PF00437.15	gi|257053650|ref|YP_003131483.1|	-	0.0052	15.7	0.0	0.58	9.0	0.0	2.5	2	0	0	2	2	2	1	Type	II/IV	secretion	system	protein
PduV-EutP	PF10662.4	gi|257053650|ref|YP_003131483.1|	-	0.0063	15.9	0.2	0.27	10.6	0.0	2.2	2	0	0	2	2	2	1	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_5	PF07728.9	gi|257053650|ref|YP_003131483.1|	-	0.012	15.3	0.1	1.4	8.6	0.0	2.5	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_30	PF13604.1	gi|257053650|ref|YP_003131483.1|	-	0.014	14.9	0.1	1.1	8.8	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
FtsK_SpoIIIE	PF01580.13	gi|257053650|ref|YP_003131483.1|	-	0.02	14.3	0.0	0.82	9.1	0.0	2.4	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
PhoH	PF02562.11	gi|257053650|ref|YP_003131483.1|	-	0.022	14.0	0.0	2.7	7.1	0.0	2.3	2	0	0	2	2	2	0	PhoH-like	protein
DUF87	PF01935.12	gi|257053650|ref|YP_003131483.1|	-	0.026	14.3	1.0	0.35	10.6	0.0	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	DUF87
SbcCD_C	PF13558.1	gi|257053650|ref|YP_003131483.1|	-	0.026	14.4	3.4	6	6.8	0.6	3.6	2	1	0	2	2	2	0	Putative	exonuclease	SbcCD,	C	subunit
cobW	PF02492.14	gi|257053650|ref|YP_003131483.1|	-	0.032	13.6	0.7	1.7	8.0	0.0	2.3	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
Sigma54_activat	PF00158.21	gi|257053650|ref|YP_003131483.1|	-	0.035	13.5	1.6	5.9	6.3	0.0	2.5	3	0	0	3	3	2	0	Sigma-54	interaction	domain
FeoB_N	PF02421.13	gi|257053650|ref|YP_003131483.1|	-	0.037	13.3	0.0	0.9	8.8	0.0	2.3	2	0	0	2	2	2	0	Ferrous	iron	transport	protein	B
AAA_14	PF13173.1	gi|257053650|ref|YP_003131483.1|	-	0.041	13.7	0.0	9.1	6.1	0.0	2.5	2	0	0	2	2	2	0	AAA	domain
DUF815	PF05673.8	gi|257053650|ref|YP_003131483.1|	-	0.057	12.3	0.1	1.7	7.5	0.0	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF815)
IstB_IS21	PF01695.12	gi|257053650|ref|YP_003131483.1|	-	0.061	12.7	0.3	12	5.2	0.0	2.8	3	0	0	3	3	3	0	IstB-like	ATP	binding	protein
AAA_28	PF13521.1	gi|257053650|ref|YP_003131483.1|	-	0.11	12.4	0.3	22	4.9	0.1	3.2	4	0	0	4	4	2	0	AAA	domain
Sigma54_activ_2	PF14532.1	gi|257053650|ref|YP_003131483.1|	-	0.14	12.1	0.1	12	5.8	0.0	2.9	3	0	0	3	3	3	0	Sigma-54	interaction	domain
Arch_ATPase	PF01637.13	gi|257053650|ref|YP_003131483.1|	-	0.19	11.3	0.0	23	4.6	0.0	2.3	2	0	0	2	2	2	0	Archaeal	ATPase
CPT	PF07931.7	gi|257053650|ref|YP_003131483.1|	-	3	7.4	5.2	7.7	6.1	0.1	3.4	4	1	1	5	5	3	0	Chloramphenicol	phosphotransferase-like	protein
DUF2910	PF11139.3	gi|257053651|ref|YP_003131484.1|	-	5.2e-05	22.4	0.8	6e-05	22.2	0.6	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2910)
TRP	PF06011.7	gi|257053651|ref|YP_003131484.1|	-	0.00021	20.0	2.3	0.00024	19.7	1.6	1.0	1	0	0	1	1	1	1	Transient	receptor	potential	(TRP)	ion	channel
GPI2	PF06432.6	gi|257053651|ref|YP_003131484.1|	-	0.00086	18.7	0.5	0.00094	18.6	0.3	1.0	1	0	0	1	1	1	1	Phosphatidylinositol	N-acetylglucosaminyltransferase
DUF4181	PF13789.1	gi|257053651|ref|YP_003131484.1|	-	0.0085	16.0	0.4	0.01	15.7	0.3	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4181)
COX4_pro	PF03626.9	gi|257053651|ref|YP_003131484.1|	-	0.0088	16.1	2.0	0.01	15.8	1.4	1.2	1	0	0	1	1	1	1	Prokaryotic	Cytochrome	C	oxidase	subunit	IV
UPF0104	PF03706.8	gi|257053651|ref|YP_003131484.1|	-	0.01	15.1	0.7	0.011	15.0	0.5	1.0	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0104)
AJAP1_PANP_C	PF15298.1	gi|257053651|ref|YP_003131484.1|	-	0.019	14.8	0.1	0.022	14.6	0.0	1.1	1	0	0	1	1	1	0	AJAP1/PANP	C-terminus
MscS_TM	PF12794.2	gi|257053651|ref|YP_003131484.1|	-	0.022	13.4	0.6	0.023	13.2	0.4	1.0	1	0	0	1	1	1	0	Mechanosensitive	ion	channel	inner	membrane	domain	1
DUF898	PF05987.8	gi|257053651|ref|YP_003131484.1|	-	0.03	13.2	3.0	0.037	12.9	2.0	1.0	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF898)
Phtf-FEM1B_bdg	PF12129.3	gi|257053651|ref|YP_003131484.1|	-	0.032	13.6	0.6	0.034	13.5	0.4	1.1	1	0	0	1	1	1	0	Male	germ-cell	putative	homeodomain	transcription	factor
PgaD	PF13994.1	gi|257053651|ref|YP_003131484.1|	-	0.033	13.6	0.7	0.044	13.2	0.5	1.2	1	0	0	1	1	1	0	PgaD-like	protein
Lung_7-TM_R	PF06814.8	gi|257053651|ref|YP_003131484.1|	-	0.041	12.8	0.7	0.044	12.7	0.5	1.0	1	0	0	1	1	1	0	Lung	seven	transmembrane	receptor
CRPA	PF05745.6	gi|257053651|ref|YP_003131484.1|	-	0.047	13.4	0.6	0.066	13.0	0.4	1.2	1	0	0	1	1	1	0	Chlamydia	15	kDa	cysteine-rich	outer	membrane	protein	(CRPA)
DUF4191	PF13829.1	gi|257053651|ref|YP_003131484.1|	-	0.051	12.6	0.7	0.058	12.5	0.5	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4191)
DUF1772	PF08592.6	gi|257053651|ref|YP_003131484.1|	-	0.053	13.2	0.7	0.06	13.0	0.5	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1772)
TspO_MBR	PF03073.10	gi|257053651|ref|YP_003131484.1|	-	0.067	12.7	1.7	0.083	12.4	1.2	1.1	1	0	0	1	1	1	0	TspO/MBR	family
DUF805	PF05656.9	gi|257053651|ref|YP_003131484.1|	-	0.072	12.9	1.7	0.077	12.8	1.2	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF805)
DUF3792	PF12670.2	gi|257053651|ref|YP_003131484.1|	-	0.095	12.5	1.9	0.11	12.3	1.3	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3792)
DUF1430	PF07242.6	gi|257053651|ref|YP_003131484.1|	-	0.099	12.7	1.1	0.12	12.4	0.8	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1430)
PIRT	PF15099.1	gi|257053651|ref|YP_003131484.1|	-	0.11	11.7	0.4	0.13	11.4	0.3	1.1	1	0	0	1	1	1	0	Phosphoinositide-interacting	protein	family
7tm_7	PF08395.7	gi|257053651|ref|YP_003131484.1|	-	0.17	10.8	2.7	0.21	10.5	1.9	1.0	1	0	0	1	1	1	0	7tm	Chemosensory	receptor
DUF3366	PF11846.3	gi|257053651|ref|YP_003131484.1|	-	0.28	11.0	1.7	0.34	10.7	1.2	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3366)
DUF4131	PF13567.1	gi|257053651|ref|YP_003131484.1|	-	0.48	9.8	3.7	1.1	8.6	0.5	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
NfeD	PF01957.13	gi|257053651|ref|YP_003131484.1|	-	0.68	10.0	5.2	4.2	7.4	3.4	2.2	1	1	0	1	1	1	0	NfeD-like	C-terminal,	partner-binding
Sex_peptide	PF08138.6	gi|257053651|ref|YP_003131484.1|	-	1.7	8.5	4.0	9.8	6.1	0.0	2.1	2	0	0	2	2	2	0	Sex	peptide	(SP)	family
DUF4330	PF14221.1	gi|257053651|ref|YP_003131484.1|	-	2.2	8.1	6.9	0.33	10.8	0.3	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4330)
DUF347	PF03988.7	gi|257053651|ref|YP_003131484.1|	-	2.6	8.0	6.6	3.8	7.4	0.3	2.4	2	0	0	2	2	2	0	Repeat	of	Unknown	Function	(DUF347)
PsbN	PF02468.10	gi|257053651|ref|YP_003131484.1|	-	6.6	6.4	8.0	0.76	9.4	1.6	2.0	1	1	1	2	2	2	0	Photosystem	II	reaction	centre	N	protein	(psbN)
GIDE	PF12483.3	gi|257053652|ref|YP_003131485.1|	-	0.00096	18.5	0.0	0.0014	17.9	0.0	1.3	1	0	0	1	1	1	1	E3	Ubiquitin	ligase
CSD	PF00313.17	gi|257053654|ref|YP_003131487.1|	-	1.6e-21	75.8	0.6	1.7e-21	75.7	0.4	1.0	1	0	0	1	1	1	1	'Cold-shock'	DNA-binding	domain
S1-like	PF14444.1	gi|257053654|ref|YP_003131487.1|	-	0.0025	17.4	1.3	0.0037	16.9	0.9	1.4	1	1	0	1	1	1	1	S1-like
OB_RNB	PF08206.6	gi|257053654|ref|YP_003131487.1|	-	0.027	13.9	2.2	0.042	13.3	1.5	1.4	1	0	0	1	1	1	0	Ribonuclease	B	OB	domain
CusF_Ec	PF11604.3	gi|257053654|ref|YP_003131487.1|	-	0.04	13.7	0.1	0.051	13.4	0.0	1.3	1	0	0	1	1	1	0	Copper	binding	periplasmic	protein	CusF
UbiA	PF01040.13	gi|257053656|ref|YP_003131489.1|	-	4.5e-12	45.7	36.4	7.4e-11	41.7	25.0	2.2	1	1	0	1	1	1	1	UbiA	prenyltransferase	family
FAD_binding_7	PF03441.9	gi|257053657|ref|YP_003131490.1|	-	1e-72	244.7	0.2	1.5e-72	244.1	0.2	1.2	1	0	0	1	1	1	1	FAD	binding	domain	of	DNA	photolyase
DNA_photolyase	PF00875.13	gi|257053657|ref|YP_003131490.1|	-	7.6e-41	139.6	0.1	1.3e-40	138.9	0.1	1.3	1	0	0	1	1	1	1	DNA	photolyase
Yip1	PF04893.12	gi|257053658|ref|YP_003131491.1|	-	0.01	15.3	1.9	0.011	15.3	1.3	1.0	1	0	0	1	1	1	0	Yip1	domain
RseC_MucC	PF04246.7	gi|257053658|ref|YP_003131491.1|	-	0.013	15.0	1.2	0.014	14.9	0.8	1.0	1	0	0	1	1	1	0	Positive	regulator	of	sigma(E),	RseC/MucC
ABC2_membrane_5	PF13346.1	gi|257053658|ref|YP_003131491.1|	-	0.017	14.3	4.7	0.019	14.2	3.3	1.0	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
TctB	PF07331.6	gi|257053658|ref|YP_003131491.1|	-	0.098	12.3	3.5	0.13	11.9	2.4	1.1	1	0	0	1	1	1	0	Tripartite	tricarboxylate	transporter	TctB	family
DUF3278	PF11683.3	gi|257053658|ref|YP_003131491.1|	-	0.17	11.8	2.5	0.19	11.7	1.7	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3278)
Tic20	PF09685.5	gi|257053658|ref|YP_003131491.1|	-	0.25	11.3	2.9	0.29	11.1	2.0	1.1	1	0	0	1	1	1	0	Tic20-like	protein
DUF2207	PF09972.4	gi|257053658|ref|YP_003131491.1|	-	0.41	9.1	1.7	0.42	9.1	1.2	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
DUF2892	PF11127.3	gi|257053658|ref|YP_003131491.1|	-	0.41	10.5	5.0	1.1	9.1	3.5	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2892)
OppC_N	PF12911.2	gi|257053658|ref|YP_003131491.1|	-	0.81	9.1	4.7	0.53	9.7	0.5	2.1	2	0	0	2	2	2	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
Colicin_V	PF02674.11	gi|257053658|ref|YP_003131491.1|	-	3.6	7.4	10.6	10	5.9	7.3	1.6	1	1	0	1	1	1	0	Colicin	V	production	protein
DUF2976	PF11190.3	gi|257053658|ref|YP_003131491.1|	-	3.6	7.1	8.4	1.1	8.8	0.6	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2976)
DUF1049	PF06305.6	gi|257053658|ref|YP_003131491.1|	-	4.6	6.8	5.8	0.58	9.6	0.4	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1049)
Abhydrolase_3	PF07859.8	gi|257053661|ref|YP_003131494.1|	-	3.8e-70	235.7	1.0	5.1e-70	235.3	0.7	1.2	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
Abhydrolase_5	PF12695.2	gi|257053661|ref|YP_003131494.1|	-	1.1e-07	31.6	0.3	1.8e-07	31.0	0.2	1.5	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
COesterase	PF00135.23	gi|257053661|ref|YP_003131494.1|	-	2.9e-06	26.2	0.3	5.1e-06	25.4	0.0	1.4	2	0	0	2	2	2	1	Carboxylesterase	family
Peptidase_S9	PF00326.16	gi|257053661|ref|YP_003131494.1|	-	0.0021	17.2	0.1	0.092	11.9	0.0	2.4	3	0	0	3	3	3	1	Prolyl	oligopeptidase	family
Chlorophyllase2	PF12740.2	gi|257053661|ref|YP_003131494.1|	-	0.0051	15.7	0.0	0.0082	15.0	0.0	1.2	1	0	0	1	1	1	1	Chlorophyllase	enzyme
Thioesterase	PF00975.15	gi|257053661|ref|YP_003131494.1|	-	0.0069	16.6	0.1	0.011	15.9	0.0	1.3	1	0	0	1	1	1	1	Thioesterase	domain
DLH	PF01738.13	gi|257053661|ref|YP_003131494.1|	-	0.063	12.5	0.6	0.82	8.9	0.1	2.5	2	1	1	3	3	3	0	Dienelactone	hydrolase	family
DUF2424	PF10340.4	gi|257053661|ref|YP_003131494.1|	-	0.09	11.3	0.3	0.38	9.3	0.2	1.8	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2424)
PvlArgDC	PF01862.11	gi|257053663|ref|YP_003131496.1|	-	1.1e-23	83.5	0.0	1.3e-23	83.3	0.0	1.0	1	0	0	1	1	1	1	Pyruvoyl-dependent	arginine	decarboxylase	(PvlArgDC)
Fer4_18	PF13746.1	gi|257053664|ref|YP_003131497.1|	-	4.6e-07	30.1	11.0	4.6e-07	30.1	7.7	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|257053664|ref|YP_003131497.1|	-	2e-06	27.3	9.5	0.00097	18.9	1.1	2.7	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_17	PF13534.1	gi|257053664|ref|YP_003131497.1|	-	4.5e-06	26.9	5.6	0.0081	16.4	0.3	2.6	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|257053664|ref|YP_003131497.1|	-	1.7e-05	24.7	16.0	2.6e-05	24.1	10.1	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|257053664|ref|YP_003131497.1|	-	0.00018	21.6	16.3	0.00038	20.6	10.8	1.9	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|257053664|ref|YP_003131497.1|	-	0.00042	20.6	11.2	0.038	14.3	0.4	2.5	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.1	gi|257053664|ref|YP_003131497.1|	-	0.0098	15.7	12.8	0.18	11.7	2.2	2.4	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|257053664|ref|YP_003131497.1|	-	0.03	14.1	18.1	0.14	11.9	11.7	2.2	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|257053664|ref|YP_003131497.1|	-	0.034	13.7	18.0	0.087	12.4	2.3	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_6	PF12837.2	gi|257053664|ref|YP_003131497.1|	-	0.39	10.6	21.9	1.4	8.9	4.2	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_16	PF13484.1	gi|257053664|ref|YP_003131497.1|	-	1.2	9.8	14.3	7.1	7.4	2.7	2.4	1	1	1	2	2	2	0	4Fe-4S	double	cluster	binding	domain
Fer4_13	PF13370.1	gi|257053664|ref|YP_003131497.1|	-	5.6	7.4	15.2	0.12	12.7	2.4	2.8	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
NAD_binding_1	PF00175.16	gi|257053665|ref|YP_003131498.1|	-	1.2e-13	51.6	0.0	1.9e-13	50.9	0.0	1.4	1	0	0	1	1	1	1	Oxidoreductase	NAD-binding	domain
FAD_binding_6	PF00970.19	gi|257053665|ref|YP_003131498.1|	-	4.7e-13	49.0	0.0	8e-13	48.3	0.0	1.3	1	0	0	1	1	1	1	Oxidoreductase	FAD-binding	domain
DHODB_Fe-S_bind	PF10418.4	gi|257053665|ref|YP_003131498.1|	-	8.1e-12	44.4	1.0	1.5e-11	43.5	0.7	1.5	1	0	0	1	1	1	1	Iron-sulfur	cluster	binding	domain	of	dihydroorotate	dehydrogenase	B
FAD_binding_8	PF08022.7	gi|257053665|ref|YP_003131498.1|	-	0.019	14.8	0.0	0.042	13.7	0.0	1.6	1	0	0	1	1	1	0	FAD-binding	domain
NAD_binding_6	PF08030.7	gi|257053665|ref|YP_003131498.1|	-	0.16	11.8	0.1	1.4	8.7	0.0	2.0	2	0	0	2	2	2	0	Ferric	reductase	NAD	binding	domain
Oxidored_q6	PF01058.17	gi|257053666|ref|YP_003131499.1|	-	2.3e-24	85.4	0.0	4.3e-24	84.5	0.0	1.5	1	0	0	1	1	1	1	NADH	ubiquinone	oxidoreductase,	20	Kd	subunit
NiFeSe_Hases	PF00374.14	gi|257053667|ref|YP_003131500.1|	-	1.1e-28	100.3	0.1	2.1e-14	53.2	0.0	2.7	1	1	2	3	3	3	2	Nickel-dependent	hydrogenase
HycI	PF01750.13	gi|257053668|ref|YP_003131501.1|	-	1e-15	57.4	0.0	1.3e-15	57.0	0.0	1.1	1	0	0	1	1	1	1	Hydrogenase	maturation	protease
HHH_5	PF14520.1	gi|257053668|ref|YP_003131501.1|	-	0.1	12.7	0.0	0.4	10.8	0.0	1.9	2	0	0	2	2	2	0	Helix-hairpin-helix	domain
CBS	PF00571.23	gi|257053669|ref|YP_003131502.1|	-	3e-44	148.5	13.6	1.4e-14	53.5	1.0	4.3	4	0	0	4	4	4	4	CBS	domain
Ribosomal_S30AE	PF02482.14	gi|257053669|ref|YP_003131502.1|	-	0.021	15.2	0.7	0.063	13.7	0.1	2.2	2	0	0	2	2	2	0	Sigma	54	modulation	protein	/	S30EA	ribosomal	protein
DUF1508	PF07411.7	gi|257053669|ref|YP_003131502.1|	-	0.084	12.3	0.0	0.24	10.8	0.0	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1508)
MMPL	PF03176.10	gi|257053670|ref|YP_003131503.1|	-	5.7e-35	120.5	49.5	5.4e-20	71.3	18.4	3.0	2	1	0	2	2	2	2	MMPL	family
Sterol-sensing	PF12349.3	gi|257053670|ref|YP_003131503.1|	-	0.00077	18.9	20.3	0.0021	17.5	5.4	3.5	3	0	0	3	3	3	2	Sterol-sensing	domain	of	SREBP	cleavage-activation
Patched	PF02460.13	gi|257053670|ref|YP_003131503.1|	-	0.034	12.0	20.7	0.02	12.8	0.2	2.2	2	0	0	2	2	2	0	Patched	family
Sensor	PF13796.1	gi|257053671|ref|YP_003131504.1|	-	1.2e-29	103.2	30.9	4.9e-29	101.2	21.4	1.9	1	1	0	1	1	1	1	Putative	sensor
HTH_20	PF12840.2	gi|257053672|ref|YP_003131505.1|	-	3.4e-05	23.5	0.1	6.8e-05	22.5	0.0	1.5	2	0	0	2	2	2	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|257053672|ref|YP_003131505.1|	-	0.00013	21.5	0.1	0.00034	20.2	0.0	1.7	2	0	0	2	2	2	1	MarR	family
PadR	PF03551.9	gi|257053672|ref|YP_003131505.1|	-	0.0021	17.8	0.1	0.0067	16.1	0.0	1.8	1	1	1	2	2	2	1	Transcriptional	regulator	PadR-like	family
TrmB	PF01978.14	gi|257053672|ref|YP_003131505.1|	-	0.0022	17.6	0.0	0.0048	16.5	0.0	1.5	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.1	gi|257053672|ref|YP_003131505.1|	-	0.0078	16.5	0.0	0.013	15.8	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_11	PF08279.7	gi|257053672|ref|YP_003131505.1|	-	0.017	14.7	0.0	0.038	13.6	0.0	1.6	2	0	0	2	2	2	0	HTH	domain
DUF2742	PF10888.3	gi|257053672|ref|YP_003131505.1|	-	0.055	13.4	0.0	0.072	13.0	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2742)
HTH_24	PF13412.1	gi|257053672|ref|YP_003131505.1|	-	0.056	12.8	0.2	0.13	11.7	0.0	1.7	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
DUF1700	PF08006.6	gi|257053673|ref|YP_003131506.1|	-	0.74	9.0	5.2	0.85	8.8	3.6	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1700)
TctB	PF07331.6	gi|257053674|ref|YP_003131507.1|	-	0.13	11.9	5.2	0.15	11.7	3.6	1.1	1	0	0	1	1	1	0	Tripartite	tricarboxylate	transporter	TctB	family
DUF1772	PF08592.6	gi|257053674|ref|YP_003131507.1|	-	0.19	11.4	4.9	0.064	12.9	1.4	1.6	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF1772)
Polysacc_synt_C	PF14667.1	gi|257053674|ref|YP_003131507.1|	-	0.79	9.5	6.2	1.2	8.8	4.3	1.3	1	1	0	1	1	1	0	Polysaccharide	biosynthesis	C-terminal	domain
DUF2029	PF09594.5	gi|257053674|ref|YP_003131507.1|	-	1.3	8.4	12.9	2.1	7.7	9.0	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2029)
DUF4098	PF13345.1	gi|257053675|ref|YP_003131508.1|	-	7.3e-13	48.2	55.0	5.7e-07	29.4	4.7	4.9	2	2	5	7	7	7	6	Domain	of	unknown	function	(DUF4098)
DUF4097	PF13349.1	gi|257053675|ref|YP_003131508.1|	-	4.2e-06	26.4	0.1	0.001	18.6	0.0	3.4	2	1	0	3	3	3	1	Domain	of	unknown	function	(DUF4097)
TAT_signal	PF10518.4	gi|257053675|ref|YP_003131508.1|	-	0.24	11.4	1.9	0.62	10.2	1.3	1.7	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
GATase	PF00117.23	gi|257053676|ref|YP_003131509.1|	-	1.3e-20	73.6	0.0	1.9e-20	73.1	0.0	1.1	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.8	gi|257053676|ref|YP_003131509.1|	-	3.1e-05	23.5	0.3	0.00059	19.3	0.2	2.5	1	1	0	1	1	1	1	Peptidase	C26
HTS	PF04204.11	gi|257053676|ref|YP_003131509.1|	-	4.4e-05	22.3	0.0	5.7e-05	21.9	0.0	1.2	1	0	0	1	1	1	1	Homoserine	O-succinyltransferase
GCS2	PF04107.8	gi|257053677|ref|YP_003131510.1|	-	6.6e-13	48.4	0.3	9.2e-13	47.9	0.2	1.2	1	0	0	1	1	1	1	Glutamate-cysteine	ligase	family	2(GCS2)
AAA	PF00004.24	gi|257053680|ref|YP_003131513.1|	-	3.8e-101	334.4	0.0	2.2e-49	167.0	0.0	2.4	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
CDC48_N	PF02359.13	gi|257053680|ref|YP_003131513.1|	-	5.6e-29	99.9	0.0	2.4e-28	97.9	0.0	2.1	2	0	0	2	2	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
CDC48_2	PF02933.12	gi|257053680|ref|YP_003131513.1|	-	2e-15	56.1	0.1	1.1e-14	53.8	0.1	2.3	2	0	0	2	2	2	1	Cell	division	protein	48	(CDC48),	domain	2
AAA_16	PF13191.1	gi|257053680|ref|YP_003131513.1|	-	5e-15	55.9	0.1	1.1e-07	32.0	0.0	3.1	3	1	0	3	3	2	2	AAA	ATPase	domain
RuvB_N	PF05496.7	gi|257053680|ref|YP_003131513.1|	-	1.1e-14	54.0	0.0	8.6e-07	28.2	0.0	2.6	3	0	0	3	3	2	2	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_2	PF07724.9	gi|257053680|ref|YP_003131513.1|	-	3.4e-13	49.8	0.0	9.6e-06	25.6	0.0	2.7	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
AAA_22	PF13401.1	gi|257053680|ref|YP_003131513.1|	-	7.8e-13	48.7	0.2	0.00045	20.3	0.1	4.1	2	2	0	2	2	2	2	AAA	domain
AAA_17	PF13207.1	gi|257053680|ref|YP_003131513.1|	-	3.5e-12	47.1	0.1	0.00014	22.6	0.0	3.5	3	1	0	3	3	3	2	AAA	domain
AAA_5	PF07728.9	gi|257053680|ref|YP_003131513.1|	-	5.6e-12	45.5	2.2	5.1e-05	23.0	0.1	4.4	3	2	0	3	3	2	2	AAA	domain	(dynein-related	subfamily)
AAA_33	PF13671.1	gi|257053680|ref|YP_003131513.1|	-	1.3e-11	44.5	0.0	1.3e-05	25.1	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
TIP49	PF06068.8	gi|257053680|ref|YP_003131513.1|	-	1.4e-10	40.4	0.0	0.00028	19.7	0.0	3.1	3	0	0	3	3	3	2	TIP49	C-terminus
AAA_19	PF13245.1	gi|257053680|ref|YP_003131513.1|	-	3.7e-09	36.2	3.3	0.00086	19.0	0.1	3.3	4	0	0	4	4	2	2	Part	of	AAA	domain
AAA_14	PF13173.1	gi|257053680|ref|YP_003131513.1|	-	1.9e-08	34.2	0.0	0.0022	17.9	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
AAA_25	PF13481.1	gi|257053680|ref|YP_003131513.1|	-	4.5e-08	32.7	6.7	0.22	10.9	0.1	4.4	2	2	1	4	4	4	2	AAA	domain
IstB_IS21	PF01695.12	gi|257053680|ref|YP_003131513.1|	-	6.4e-08	32.2	0.1	0.011	15.1	0.0	2.4	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
AAA_18	PF13238.1	gi|257053680|ref|YP_003131513.1|	-	2.5e-07	31.0	0.0	0.0068	16.7	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
Zeta_toxin	PF06414.7	gi|257053680|ref|YP_003131513.1|	-	4.2e-07	29.2	0.0	0.028	13.4	0.0	2.8	2	0	0	2	2	2	2	Zeta	toxin
Mg_chelatase	PF01078.16	gi|257053680|ref|YP_003131513.1|	-	6.2e-07	28.7	0.4	0.033	13.3	0.0	2.8	3	0	0	3	3	3	2	Magnesium	chelatase,	subunit	ChlI
RNA_helicase	PF00910.17	gi|257053680|ref|YP_003131513.1|	-	7.4e-07	29.3	0.0	0.047	13.8	0.0	2.7	2	0	0	2	2	2	2	RNA	helicase
AAA_28	PF13521.1	gi|257053680|ref|YP_003131513.1|	-	2.2e-06	27.7	0.0	0.014	15.3	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
AAA_3	PF07726.6	gi|257053680|ref|YP_003131513.1|	-	6.1e-06	25.8	0.0	0.091	12.3	0.0	2.5	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.21	gi|257053680|ref|YP_003131513.1|	-	6.1e-06	25.8	0.0	0.21	11.0	0.0	3.1	3	0	0	3	3	3	2	Sigma-54	interaction	domain
KaiC	PF06745.8	gi|257053680|ref|YP_003131513.1|	-	9.6e-06	24.8	0.6	0.43	9.6	0.0	3.5	2	1	1	3	3	3	2	KaiC
Arch_ATPase	PF01637.13	gi|257053680|ref|YP_003131513.1|	-	1.3e-05	25.0	0.0	0.076	12.7	0.0	3.4	2	2	1	3	3	3	1	Archaeal	ATPase
PhoH	PF02562.11	gi|257053680|ref|YP_003131513.1|	-	1.6e-05	24.2	0.4	0.2	10.8	0.0	3.2	3	0	0	3	3	3	2	PhoH-like	protein
Sigma54_activ_2	PF14532.1	gi|257053680|ref|YP_003131513.1|	-	2.1e-05	24.5	0.0	0.22	11.5	0.0	2.5	2	0	0	2	2	2	2	Sigma-54	interaction	domain
NB-ARC	PF00931.17	gi|257053680|ref|YP_003131513.1|	-	2.4e-05	23.3	0.0	0.051	12.4	0.0	2.2	2	0	0	2	2	2	2	NB-ARC	domain
AAA_24	PF13479.1	gi|257053680|ref|YP_003131513.1|	-	3.1e-05	23.6	0.3	0.062	12.8	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
DUF815	PF05673.8	gi|257053680|ref|YP_003131513.1|	-	3.7e-05	22.7	0.0	0.19	10.5	0.0	2.4	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
NACHT	PF05729.7	gi|257053680|ref|YP_003131513.1|	-	7.4e-05	22.4	0.1	0.27	10.8	0.0	3.3	4	0	0	4	4	3	1	NACHT	domain
ABC_tran	PF00005.22	gi|257053680|ref|YP_003131513.1|	-	9.2e-05	22.7	0.0	0.65	10.2	0.0	2.6	2	0	0	2	2	2	2	ABC	transporter
AAA_30	PF13604.1	gi|257053680|ref|YP_003131513.1|	-	0.00016	21.3	0.1	0.68	9.4	0.0	2.8	2	0	0	2	2	2	2	AAA	domain
DUF2075	PF09848.4	gi|257053680|ref|YP_003131513.1|	-	0.00026	20.0	0.0	0.32	9.9	0.0	2.3	2	0	0	2	2	2	2	Uncharacterized	conserved	protein	(DUF2075)
Parvo_NS1	PF01057.12	gi|257053680|ref|YP_003131513.1|	-	0.00029	19.7	0.0	0.33	9.7	0.0	2.2	2	0	0	2	2	2	2	Parvovirus	non-structural	protein	NS1
SKI	PF01202.17	gi|257053680|ref|YP_003131513.1|	-	0.00056	19.8	0.0	0.28	11.0	0.0	2.5	2	0	0	2	2	2	1	Shikimate	kinase
AAA_11	PF13086.1	gi|257053680|ref|YP_003131513.1|	-	0.00061	19.4	0.0	0.59	9.6	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
NTPase_1	PF03266.10	gi|257053680|ref|YP_003131513.1|	-	0.00065	19.4	1.8	1.9	8.1	0.0	3.9	3	1	1	4	4	4	1	NTPase
IPT	PF01745.11	gi|257053680|ref|YP_003131513.1|	-	0.0019	17.4	0.9	0.56	9.3	0.0	2.8	3	0	0	3	3	3	1	Isopentenyl	transferase
UPF0079	PF02367.12	gi|257053680|ref|YP_003131513.1|	-	0.0019	17.7	0.0	1.8	8.2	0.0	2.5	2	0	0	2	2	2	1	Uncharacterised	P-loop	hydrolase	UPF0079
KAP_NTPase	PF07693.9	gi|257053680|ref|YP_003131513.1|	-	0.0019	17.2	0.2	2.5	6.9	0.0	3.5	2	2	1	4	4	4	1	KAP	family	P-loop	domain
Bac_DnaA	PF00308.13	gi|257053680|ref|YP_003131513.1|	-	0.0062	16.2	0.0	3.6	7.1	0.0	2.5	2	0	0	2	2	2	0	Bacterial	dnaA	protein
ResIII	PF04851.10	gi|257053680|ref|YP_003131513.1|	-	0.0081	16.0	0.0	5	6.9	0.0	2.4	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
Viral_helicase1	PF01443.13	gi|257053680|ref|YP_003131513.1|	-	0.014	14.9	0.0	1.1	8.6	0.0	2.2	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
CPT	PF07931.7	gi|257053680|ref|YP_003131513.1|	-	0.02	14.5	0.0	3.2	7.3	0.0	2.4	2	0	0	2	2	2	0	Chloramphenicol	phosphotransferase-like	protein
KTI12	PF08433.5	gi|257053680|ref|YP_003131513.1|	-	0.052	12.7	0.0	10	5.1	0.0	2.5	2	0	0	2	2	2	0	Chromatin	associated	protein	KTI12
T2SE	PF00437.15	gi|257053680|ref|YP_003131513.1|	-	0.058	12.2	0.0	9.1	5.0	0.0	2.3	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
Torsin	PF06309.6	gi|257053680|ref|YP_003131513.1|	-	0.061	13.2	0.0	4	7.3	0.0	2.4	2	0	0	2	2	2	0	Torsin
Cytidylate_kin2	PF13189.1	gi|257053680|ref|YP_003131513.1|	-	0.077	12.8	0.0	2.1	8.2	0.0	2.2	2	0	0	2	2	2	0	Cytidylate	kinase-like	family
Guanylate_kin	PF00625.16	gi|257053680|ref|YP_003131513.1|	-	0.11	11.9	0.3	50	3.2	0.0	3.4	3	1	1	4	4	3	0	Guanylate	kinase
AFG1_ATPase	PF03969.11	gi|257053680|ref|YP_003131513.1|	-	0.13	11.0	0.0	5.4	5.7	0.0	2.2	2	0	0	2	2	2	0	AFG1-like	ATPase
HypA	PF01155.14	gi|257053681|ref|YP_003131514.1|	-	0.00044	19.9	0.1	0.00052	19.6	0.1	1.1	1	0	0	1	1	1	1	Hydrogenase	expression/synthesis	hypA	family
zf-ribbon_3	PF13248.1	gi|257053681|ref|YP_003131514.1|	-	0.0044	16.1	1.4	0.32	10.2	0.3	2.3	2	0	0	2	2	2	2	zinc-ribbon	domain
DZR	PF12773.2	gi|257053681|ref|YP_003131514.1|	-	0.13	12.1	1.2	0.31	10.8	0.9	1.6	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-CCHC	PF00098.18	gi|257053681|ref|YP_003131514.1|	-	0.28	11.2	4.7	0.53	10.3	0.6	2.4	2	0	0	2	2	2	0	Zinc	knuckle
zinc_ribbon_2	PF13240.1	gi|257053681|ref|YP_003131514.1|	-	0.42	10.1	3.0	1.6	8.2	0.4	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-RanBP	PF00641.13	gi|257053681|ref|YP_003131514.1|	-	1	8.5	5.1	3.8	6.7	0.1	2.1	2	0	0	2	2	2	0	Zn-finger	in	Ran	binding	protein	and	others
Zn-ribbon_8	PF09723.5	gi|257053681|ref|YP_003131514.1|	-	1.5	8.8	3.9	3.4	7.6	2.7	1.6	1	1	0	1	1	1	0	Zinc	ribbon	domain
Rubredoxin	PF00301.15	gi|257053681|ref|YP_003131514.1|	-	5.7	6.9	9.8	0.26	11.1	0.7	2.3	1	1	1	2	2	2	0	Rubredoxin
Abhydrolase_1	PF00561.15	gi|257053682|ref|YP_003131515.1|	-	4.1e-24	85.4	0.1	5.4e-24	85.0	0.1	1.2	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
Abhydrolase_6	PF12697.2	gi|257053682|ref|YP_003131515.1|	-	3e-16	59.9	6.6	4.2e-16	59.5	4.5	1.2	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_5	PF12695.2	gi|257053682|ref|YP_003131515.1|	-	0.0022	17.7	0.7	0.024	14.3	0.1	2.2	2	1	0	2	2	2	1	Alpha/beta	hydrolase	family
Esterase	PF00756.15	gi|257053682|ref|YP_003131515.1|	-	0.013	14.9	0.1	0.052	12.9	0.0	1.9	2	0	0	2	2	2	0	Putative	esterase
Peptidase_S9	PF00326.16	gi|257053682|ref|YP_003131515.1|	-	0.018	14.2	0.0	1.9	7.6	0.0	2.4	2	0	0	2	2	2	0	Prolyl	oligopeptidase	family
Abhydrolase_4	PF08386.5	gi|257053682|ref|YP_003131515.1|	-	0.065	13.1	0.0	0.14	12.0	0.0	1.5	1	0	0	1	1	1	0	TAP-like	protein
Cys_Met_Meta_PP	PF01053.15	gi|257053683|ref|YP_003131516.1|	-	6.8e-136	452.5	0.0	7.7e-136	452.3	0.0	1.0	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_1_2	PF00155.16	gi|257053683|ref|YP_003131516.1|	-	1.4e-07	30.8	0.0	2.1e-07	30.2	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Aminotran_5	PF00266.14	gi|257053683|ref|YP_003131516.1|	-	7.1e-05	21.7	0.1	0.00013	20.8	0.1	1.4	1	0	0	1	1	1	1	Aminotransferase	class-V
DegT_DnrJ_EryC1	PF01041.12	gi|257053683|ref|YP_003131516.1|	-	0.00021	20.4	0.9	0.00034	19.7	0.7	1.2	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Beta_elim_lyase	PF01212.16	gi|257053683|ref|YP_003131516.1|	-	0.0038	16.4	0.0	0.016	14.3	0.0	2.0	1	1	0	1	1	1	1	Beta-eliminating	lyase
fn3	PF00041.16	gi|257053685|ref|YP_003131518.1|	-	1.5e-05	25.0	0.5	0.61	10.2	0.0	4.0	3	0	0	3	3	3	2	Fibronectin	type	III	domain
PLDc_2	PF13091.1	gi|257053686|ref|YP_003131519.1|	-	1.8e-11	43.8	0.0	5.9e-07	29.2	0.0	2.2	2	0	0	2	2	2	2	PLD-like	domain
PLDc	PF00614.17	gi|257053686|ref|YP_003131519.1|	-	0.00014	21.5	0.1	0.12	12.2	0.0	2.5	2	0	0	2	2	2	2	Phospholipase	D	Active	site	motif
Laminin_G_3	PF13385.1	gi|257053687|ref|YP_003131520.1|	-	0.00046	20.4	9.2	0.011	15.9	0.8	4.7	3	2	0	3	3	3	2	Concanavalin	A-like	lectin/glucanases	superfamily
Aminotran_5	PF00266.14	gi|257053688|ref|YP_003131521.1|	-	2.3e-29	102.2	0.0	3e-29	101.9	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-V
SLA_LP_auto_ag	PF05889.8	gi|257053688|ref|YP_003131521.1|	-	0.1	11.0	0.0	0.15	10.4	0.0	1.3	1	0	0	1	1	1	0	Soluble	liver	antigen/liver	pancreas	antigen	(SLA/LP	autoantigen)
Fic	PF02661.13	gi|257053689|ref|YP_003131522.1|	-	8e-19	68.1	0.1	3e-18	66.2	0.0	1.9	2	0	0	2	2	2	1	Fic/DOC	family
Fic_N	PF13784.1	gi|257053689|ref|YP_003131522.1|	-	4.2e-13	48.9	0.1	8.3e-13	48.0	0.0	1.5	1	0	0	1	1	1	1	Fic/DOC	family	N-terminal
HTH_DeoR	PF08220.7	gi|257053689|ref|YP_003131522.1|	-	5.7e-06	25.7	0.1	1.3e-05	24.6	0.1	1.6	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_13	PF11972.3	gi|257053689|ref|YP_003131522.1|	-	0.00055	19.7	1.1	0.0014	18.4	0.0	2.2	3	0	0	3	3	3	1	HTH	DNA	binding	domain
TrmB	PF01978.14	gi|257053689|ref|YP_003131522.1|	-	0.0011	18.6	0.1	0.004	16.8	0.0	1.9	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.7	gi|257053689|ref|YP_003131522.1|	-	0.0035	16.9	0.0	0.0068	16.0	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
GntR	PF00392.16	gi|257053689|ref|YP_003131522.1|	-	0.007	15.7	0.1	0.019	14.4	0.0	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_17	PF12728.2	gi|257053689|ref|YP_003131522.1|	-	0.0093	16.2	0.0	0.024	14.8	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
Oest_recep	PF02159.10	gi|257053689|ref|YP_003131522.1|	-	0.12	12.5	0.0	0.27	11.3	0.0	1.6	1	0	0	1	1	1	0	Oestrogen	receptor
Ribosomal_S25	PF03297.10	gi|257053689|ref|YP_003131522.1|	-	0.17	11.8	0.0	0.29	11.1	0.0	1.3	1	0	0	1	1	1	0	S25	ribosomal	protein
DNA_ligase_aden	PF01653.13	gi|257053690|ref|YP_003131523.1|	-	3.2e-105	351.5	0.0	5.4e-105	350.7	0.0	1.3	1	0	0	1	1	1	1	NAD-dependent	DNA	ligase	adenylation	domain
DNA_ligase_OB	PF03120.11	gi|257053690|ref|YP_003131523.1|	-	3.6e-28	97.0	1.9	7.2e-28	96.0	1.3	1.5	1	0	0	1	1	1	1	NAD-dependent	DNA	ligase	OB-fold	domain
HHH_2	PF12826.2	gi|257053690|ref|YP_003131523.1|	-	1.8e-19	69.4	0.1	1.1e-18	66.8	0.1	2.5	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
HHH_5	PF14520.1	gi|257053690|ref|YP_003131523.1|	-	6.6e-19	67.8	2.7	9.3e-10	38.5	0.2	3.5	3	0	0	3	3	3	2	Helix-hairpin-helix	domain
BRCT	PF00533.21	gi|257053690|ref|YP_003131523.1|	-	5.5e-14	52.0	0.0	1.1e-13	51.0	0.0	1.5	1	0	0	1	1	1	1	BRCA1	C	Terminus	(BRCT)	domain
HHH	PF00633.18	gi|257053690|ref|YP_003131523.1|	-	8.2e-08	31.5	0.0	5.7e-06	25.7	0.0	3.4	3	0	0	3	3	3	1	Helix-hairpin-helix	motif
DNA_ligase_ZBD	PF03119.11	gi|257053690|ref|YP_003131523.1|	-	1.5e-06	27.7	4.8	4.1e-06	26.3	3.3	1.8	1	0	0	1	1	1	1	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
HHH_8	PF14716.1	gi|257053690|ref|YP_003131523.1|	-	0.017	15.2	0.7	0.85	9.8	0.0	3.7	3	1	0	3	3	3	0	Helix-hairpin-helix	domain
IPPT	PF01715.12	gi|257053690|ref|YP_003131523.1|	-	0.028	13.4	0.1	0.069	12.1	0.0	1.6	2	0	0	2	2	2	0	IPP	transferase
Pirin	PF02678.11	gi|257053691|ref|YP_003131524.1|	-	1.2e-18	66.9	1.1	1.8e-18	66.3	0.1	1.7	2	0	0	2	2	2	1	Pirin
Pirin_C	PF05726.8	gi|257053691|ref|YP_003131524.1|	-	1e-05	25.5	0.0	3.6e-05	23.7	0.0	1.8	2	0	0	2	2	2	1	Pirin	C-terminal	cupin	domain
Cupin_2	PF07883.6	gi|257053691|ref|YP_003131524.1|	-	0.027	13.9	0.2	1.2	8.7	0.0	2.4	2	0	0	2	2	2	0	Cupin	domain
ABC2_membrane_2	PF12679.2	gi|257053692|ref|YP_003131525.1|	-	8.2e-27	93.7	13.1	3.1e-26	91.8	9.1	1.7	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.2	gi|257053692|ref|YP_003131525.1|	-	3.9e-10	39.3	12.1	5.3e-10	38.8	8.4	1.2	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.19	gi|257053692|ref|YP_003131525.1|	-	8.3e-07	28.3	15.0	1.7e-06	27.3	10.4	1.6	1	1	0	1	1	1	1	ABC-2	type	transporter
ABC2_membrane_5	PF13346.1	gi|257053692|ref|YP_003131525.1|	-	0.00016	21.0	3.7	0.0003	20.1	2.5	1.4	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.2	gi|257053692|ref|YP_003131525.1|	-	0.00048	19.2	20.4	0.00048	19.2	14.1	1.5	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC_tran	PF00005.22	gi|257053693|ref|YP_003131526.1|	-	3.6e-26	92.0	0.0	5.7e-26	91.4	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|257053693|ref|YP_003131526.1|	-	2.2e-11	44.2	0.0	1.4e-06	28.5	0.0	2.1	1	1	0	2	2	2	2	AAA	domain
AAA_29	PF13555.1	gi|257053693|ref|YP_003131526.1|	-	0.0011	18.4	0.0	0.0023	17.4	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.1	gi|257053693|ref|YP_003131526.1|	-	0.0041	17.4	0.1	0.0059	16.9	0.1	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|257053693|ref|YP_003131526.1|	-	0.023	14.7	0.0	0.042	13.8	0.0	1.4	1	1	0	1	1	1	0	AAA	ATPase	domain
ArgK	PF03308.11	gi|257053693|ref|YP_003131526.1|	-	0.033	12.9	0.2	0.12	11.1	0.0	1.8	2	0	0	2	2	2	0	ArgK	protein
DUF258	PF03193.11	gi|257053693|ref|YP_003131526.1|	-	0.053	12.7	0.0	0.078	12.1	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
MobB	PF03205.9	gi|257053693|ref|YP_003131526.1|	-	0.071	12.8	0.0	0.43	10.2	0.0	2.1	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Exonuc_VII_S	PF02609.11	gi|257053693|ref|YP_003131526.1|	-	0.08	12.7	0.1	0.21	11.3	0.0	1.7	2	0	0	2	2	2	0	Exonuclease	VII	small	subunit
AAA_25	PF13481.1	gi|257053693|ref|YP_003131526.1|	-	0.081	12.3	0.3	1.9	7.8	0.0	2.8	1	1	1	2	2	2	0	AAA	domain
SbcCD_C	PF13558.1	gi|257053693|ref|YP_003131526.1|	-	0.095	12.6	0.0	0.35	10.8	0.0	2.0	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
DUF4162	PF13732.1	gi|257053693|ref|YP_003131526.1|	-	0.1	13.1	0.0	0.19	12.2	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4162)
AAA_22	PF13401.1	gi|257053693|ref|YP_003131526.1|	-	0.12	12.5	0.0	0.39	10.8	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_17	PF13207.1	gi|257053693|ref|YP_003131526.1|	-	0.12	13.1	0.0	0.24	12.2	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
SMC_N	PF02463.14	gi|257053693|ref|YP_003131526.1|	-	0.15	11.2	0.0	3.6	6.7	0.0	2.1	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
ABC2_membrane_2	PF12679.2	gi|257053695|ref|YP_003131528.1|	-	7.3e-40	136.5	19.4	8.4e-40	136.3	13.5	1.0	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.2	gi|257053695|ref|YP_003131528.1|	-	1.4e-18	66.9	17.9	1.7e-18	66.6	12.4	1.1	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.2	gi|257053695|ref|YP_003131528.1|	-	8.8e-14	51.2	18.3	8.8e-14	51.2	12.7	1.8	1	1	1	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_5	PF13346.1	gi|257053695|ref|YP_003131528.1|	-	3.2e-06	26.5	15.0	3.2e-05	23.3	10.5	2.0	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.19	gi|257053695|ref|YP_003131528.1|	-	3.1e-05	23.2	15.0	3.1e-05	23.2	10.4	1.6	2	0	0	2	2	2	1	ABC-2	type	transporter
DUF2206	PF09971.4	gi|257053695|ref|YP_003131528.1|	-	2.3	6.9	7.4	4.3	6.0	1.3	2.2	2	0	0	2	2	2	0	Predicted	membrane	protein	(DUF2206)
ABC_tran	PF00005.22	gi|257053696|ref|YP_003131529.1|	-	8.9e-30	103.7	0.0	1.5e-29	103.0	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|257053696|ref|YP_003131529.1|	-	3.4e-14	53.4	0.0	2.2e-09	37.7	0.0	2.1	1	1	1	2	2	2	2	AAA	domain
DUF4162	PF13732.1	gi|257053696|ref|YP_003131529.1|	-	3.9e-06	27.2	0.0	7.8e-06	26.3	0.0	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4162)
AAA_29	PF13555.1	gi|257053696|ref|YP_003131529.1|	-	0.0049	16.3	0.0	0.0097	15.4	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_10	PF12846.2	gi|257053696|ref|YP_003131529.1|	-	0.0054	16.2	0.1	0.36	10.2	0.0	2.2	1	1	0	2	2	2	1	AAA-like	domain
SMC_N	PF02463.14	gi|257053696|ref|YP_003131529.1|	-	0.015	14.5	0.1	2.4	7.3	0.0	2.2	1	1	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
AAA_25	PF13481.1	gi|257053696|ref|YP_003131529.1|	-	0.016	14.6	0.1	0.07	12.5	0.0	2.0	1	1	0	1	1	1	0	AAA	domain
AAA_23	PF13476.1	gi|257053696|ref|YP_003131529.1|	-	0.021	15.1	0.3	0.035	14.4	0.2	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_16	PF13191.1	gi|257053696|ref|YP_003131529.1|	-	0.026	14.5	0.0	0.058	13.3	0.0	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
DUF258	PF03193.11	gi|257053696|ref|YP_003131529.1|	-	0.049	12.8	0.0	0.078	12.1	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
TerC	PF03741.11	gi|257053698|ref|YP_003131531.1|	-	0.045	13.1	0.1	0.05	13.0	0.0	1.1	1	0	0	1	1	1	0	Integral	membrane	protein	TerC	family
OAD_beta	PF03977.8	gi|257053700|ref|YP_003131533.1|	-	0.00089	18.0	2.0	0.0011	17.8	1.4	1.1	1	0	0	1	1	1	1	Na+-transporting	oxaloacetate	decarboxylase	beta	subunit
UvrC_HhH_N	PF08459.6	gi|257053701|ref|YP_003131534.1|	-	5.2e-42	143.0	0.0	7.9e-42	142.4	0.0	1.3	1	0	0	1	1	1	1	UvrC	Helix-hairpin-helix	N-terminal
HHH	PF00633.18	gi|257053701|ref|YP_003131534.1|	-	1.9e-09	36.6	0.4	9.4e-07	28.1	0.0	2.9	2	0	0	2	2	2	2	Helix-hairpin-helix	motif
HHH_5	PF14520.1	gi|257053701|ref|YP_003131534.1|	-	2.6e-08	33.9	0.5	7.5e-08	32.4	0.0	2.1	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
GIY-YIG	PF01541.19	gi|257053701|ref|YP_003131534.1|	-	3.3e-07	30.5	0.0	5.4e-07	29.8	0.0	1.3	1	0	0	1	1	1	1	GIY-YIG	catalytic	domain
HHH_2	PF12826.2	gi|257053701|ref|YP_003131534.1|	-	1e-06	28.5	0.0	2.4e-06	27.3	0.0	1.6	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
UVR	PF02151.14	gi|257053701|ref|YP_003131534.1|	-	2.3e-06	26.9	3.9	6.2e-06	25.5	0.8	2.6	2	0	0	2	2	2	1	UvrB/uvrC	motif
IMS_HHH	PF11798.3	gi|257053701|ref|YP_003131534.1|	-	0.0094	15.9	0.0	2.1	8.5	0.0	2.6	2	0	0	2	2	2	1	IMS	family	HHH	motif
HHH_8	PF14716.1	gi|257053701|ref|YP_003131534.1|	-	0.014	15.5	0.0	4.4	7.5	0.0	2.7	2	0	0	2	2	2	0	Helix-hairpin-helix	domain
HHH_3	PF12836.2	gi|257053701|ref|YP_003131534.1|	-	0.073	13.0	0.0	0.41	10.6	0.0	2.1	2	0	0	2	2	2	0	Helix-hairpin-helix	motif
5_3_exonuc	PF01367.15	gi|257053701|ref|YP_003131534.1|	-	0.078	13.2	0.0	0.81	9.9	0.0	2.2	1	1	1	2	2	2	0	5'-3'	exonuclease,	C-terminal	SAM	fold
Arch_ATPase	PF01637.13	gi|257053702|ref|YP_003131535.1|	-	7.6e-27	94.5	0.0	1.7e-26	93.3	0.0	1.6	1	1	0	1	1	1	1	Archaeal	ATPase
DUF234	PF03008.9	gi|257053702|ref|YP_003131535.1|	-	1.5e-26	92.4	0.0	3.5e-26	91.2	0.0	1.6	1	0	0	1	1	1	1	Archaea	bacterial	proteins	of	unknown	function
AAA_14	PF13173.1	gi|257053702|ref|YP_003131535.1|	-	1.8e-07	31.1	0.0	3.2e-07	30.3	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
MarR_2	PF12802.2	gi|257053702|ref|YP_003131535.1|	-	1.6e-05	24.4	0.0	4.1e-05	23.1	0.0	1.6	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.5	gi|257053702|ref|YP_003131535.1|	-	4.9e-05	22.8	0.1	0.00013	21.4	0.0	1.8	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
AAA_22	PF13401.1	gi|257053702|ref|YP_003131535.1|	-	0.00011	22.3	0.0	0.00029	20.9	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|257053702|ref|YP_003131535.1|	-	0.00073	19.5	0.0	0.0069	16.3	0.0	2.1	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_25	PF13481.1	gi|257053702|ref|YP_003131535.1|	-	0.0025	17.2	0.0	0.087	12.2	0.0	2.4	1	1	0	1	1	1	1	AAA	domain
HTH_45	PF14947.1	gi|257053702|ref|YP_003131535.1|	-	0.0047	16.7	0.0	0.0086	15.8	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_20	PF12840.2	gi|257053702|ref|YP_003131535.1|	-	0.0064	16.2	0.1	0.028	14.1	0.0	2.0	3	0	0	3	3	3	1	Helix-turn-helix	domain
HTH_27	PF13463.1	gi|257053702|ref|YP_003131535.1|	-	0.0091	16.3	0.0	0.018	15.3	0.0	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.14	gi|257053702|ref|YP_003131535.1|	-	0.0095	15.6	0.0	0.018	14.7	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.17	gi|257053702|ref|YP_003131535.1|	-	0.011	15.4	0.0	0.021	14.5	0.0	1.4	1	0	0	1	1	1	0	MarR	family
Grp1_Fun34_YaaH	PF01184.14	gi|257053703|ref|YP_003131536.1|	-	1.7e-05	24.2	10.5	1.7e-05	24.2	7.2	1.6	1	1	0	2	2	2	1	GPR1/FUN34/yaaH	family
DUF4225	PF13988.1	gi|257053703|ref|YP_003131536.1|	-	0.052	13.0	2.2	0.099	12.0	1.5	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4225)
SelR	PF01641.13	gi|257053704|ref|YP_003131537.1|	-	2.7e-46	156.2	0.0	3.1e-46	156.0	0.0	1.0	1	0	0	1	1	1	1	SelR	domain
Yippee-Mis18	PF03226.9	gi|257053704|ref|YP_003131537.1|	-	1.6e-05	24.8	0.0	2.2e-05	24.3	0.0	1.2	1	0	0	1	1	1	1	Yippee	zinc-binding/DNA-binding	/Mis18,	centromere	assembly
Lar_restr_allev	PF14354.1	gi|257053704|ref|YP_003131537.1|	-	0.032	14.5	1.0	3	8.2	0.9	2.3	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
DZR	PF12773.2	gi|257053704|ref|YP_003131537.1|	-	0.052	13.3	0.0	0.18	11.6	0.0	1.9	1	1	0	1	1	1	0	Double	zinc	ribbon
HECT_2	PF09814.4	gi|257053704|ref|YP_003131537.1|	-	0.16	10.6	0.0	8	5.0	0.0	2.0	1	1	0	2	2	2	0	HECT-like	Ubiquitin-conjugating	enzyme	(E2)-binding
TF_Zn_Ribbon	PF08271.7	gi|257053704|ref|YP_003131537.1|	-	0.2	11.0	6.4	2.2	7.6	0.5	3.2	3	1	0	3	3	3	0	TFIIB	zinc-binding
Yip1	PF04893.12	gi|257053705|ref|YP_003131538.1|	-	0.3	10.5	0.1	0.3	10.5	0.0	2.4	2	1	0	2	2	2	0	Yip1	domain
TrbC	PF04956.8	gi|257053705|ref|YP_003131538.1|	-	4.5	7.3	7.3	7.9	6.5	3.3	2.5	1	1	1	2	2	2	0	TrbC/VIRB2	family
MAF_flag10	PF01973.13	gi|257053706|ref|YP_003131539.1|	-	3e-24	85.4	0.0	4.1e-24	84.9	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF115
TPK_catalytic	PF04263.11	gi|257053706|ref|YP_003131539.1|	-	0.00046	19.7	0.1	0.0039	16.7	0.1	2.1	2	0	0	2	2	2	1	Thiamin	pyrophosphokinase,	catalytic	domain
Pterin_bind	PF00809.17	gi|257053707|ref|YP_003131540.1|	-	6.7e-34	117.1	0.0	9.4e-34	116.6	0.0	1.2	1	0	0	1	1	1	1	Pterin	binding	enzyme
Radical_SAM	PF04055.16	gi|257053707|ref|YP_003131540.1|	-	0.14	12.2	0.0	0.27	11.3	0.0	1.5	1	0	0	1	1	1	0	Radical	SAM	superfamily
DUF4398	PF14346.1	gi|257053708|ref|YP_003131541.1|	-	0.7	9.9	4.7	1.7	8.7	3.2	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4398)
DUF1025	PF06262.6	gi|257053710|ref|YP_003131543.1|	-	0.095	12.4	0.1	0.14	11.9	0.0	1.3	1	0	0	1	1	1	0	Possibl	zinc	metallo-peptidase
Peptidase_M10	PF00413.19	gi|257053713|ref|YP_003131546.1|	-	0.066	12.9	0.1	0.066	12.9	0.0	1.0	1	0	0	1	1	1	0	Matrixin
SpoU_methylase	PF00588.14	gi|257053717|ref|YP_003131550.1|	-	4.2e-29	101.2	0.0	5.5e-29	100.8	0.0	1.2	1	0	0	1	1	1	1	SpoU	rRNA	Methylase	family
Methyltrn_RNA_4	PF09936.4	gi|257053717|ref|YP_003131550.1|	-	0.0053	16.2	0.0	0.06	12.8	0.0	2.1	2	0	0	2	2	2	1	SAM-dependent	RNA	methyltransferase
DUF457	PF04307.9	gi|257053718|ref|YP_003131551.1|	-	4.6e-05	22.7	8.1	5.5e-05	22.5	5.6	1.0	1	0	0	1	1	1	1	Predicted	membrane-bound	metal-dependent	hydrolase	(DUF457)
GatB_N	PF02934.10	gi|257053719|ref|YP_003131552.1|	-	4.9e-73	245.5	0.0	7.7e-73	244.8	0.0	1.1	1	0	0	1	1	1	1	GatB/GatE	catalytic	domain
GatB_Yqey	PF02637.13	gi|257053719|ref|YP_003131552.1|	-	3e-21	75.7	0.0	6e-21	74.7	0.0	1.6	1	0	0	1	1	1	1	GatB	domain
GAD	PF02938.9	gi|257053719|ref|YP_003131552.1|	-	9.7e-11	41.6	0.0	3.3e-10	39.9	0.0	2.0	1	1	0	1	1	1	1	GAD	domain
YqeY	PF09424.5	gi|257053719|ref|YP_003131552.1|	-	0.018	14.9	0.2	0.039	13.8	0.1	1.6	1	0	0	1	1	1	0	Yqey-like	protein
DUF1727	PF08353.5	gi|257053720|ref|YP_003131553.1|	-	0.016	14.7	0.0	0.039	13.5	0.0	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1727)
Lyase_1	PF00206.15	gi|257053721|ref|YP_003131554.1|	-	9.6e-108	360.0	0.0	1.4e-107	359.5	0.0	1.2	1	0	0	1	1	1	1	Lyase
FumaraseC_C	PF10415.4	gi|257053721|ref|YP_003131554.1|	-	7.9e-26	89.8	5.6	7.4e-25	86.7	0.7	3.3	3	0	0	3	3	3	1	Fumarase	C	C-terminus
HTH_5	PF01022.15	gi|257053722|ref|YP_003131555.1|	-	0.0075	15.9	0.0	0.011	15.3	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_11	PF08279.7	gi|257053722|ref|YP_003131555.1|	-	0.012	15.1	0.2	0.018	14.6	0.1	1.3	1	0	0	1	1	1	0	HTH	domain
HTH_40	PF14493.1	gi|257053722|ref|YP_003131555.1|	-	0.045	13.9	0.0	0.056	13.6	0.0	1.1	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_20	PF12840.2	gi|257053722|ref|YP_003131555.1|	-	0.075	12.8	0.4	0.12	12.2	0.3	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF2984	PF11203.3	gi|257053722|ref|YP_003131555.1|	-	0.078	13.0	1.8	0.15	12.1	0.9	1.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2984)
Zn-ribbon_8	PF09723.5	gi|257053722|ref|YP_003131555.1|	-	0.15	12.0	5.1	0.48	10.4	3.5	1.8	1	1	0	1	1	1	0	Zinc	ribbon	domain
HypA	PF01155.14	gi|257053722|ref|YP_003131555.1|	-	0.19	11.4	1.1	0.32	10.6	0.7	1.5	1	1	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
PhnA_Zn_Ribbon	PF08274.7	gi|257053722|ref|YP_003131555.1|	-	0.23	11.2	5.4	2.2	8.1	1.1	2.2	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
DNA_RNApol_7kD	PF03604.8	gi|257053722|ref|YP_003131555.1|	-	0.73	9.3	2.6	2.3	7.7	1.8	1.8	1	1	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-trcl	PF13451.1	gi|257053722|ref|YP_003131555.1|	-	1.4	8.5	6.9	0.29	10.8	0.4	2.1	1	1	1	2	2	2	0	Probable	zinc-binding	domain
HNH	PF01844.18	gi|257053722|ref|YP_003131555.1|	-	3.2	7.7	5.0	14	5.6	0.4	2.7	1	1	2	3	3	3	0	HNH	endonuclease
PTH2	PF01981.11	gi|257053723|ref|YP_003131556.1|	-	1.9e-39	133.9	0.2	2.1e-39	133.7	0.1	1.0	1	0	0	1	1	1	1	Peptidyl-tRNA	hydrolase	PTH2
Proteasome	PF00227.21	gi|257053724|ref|YP_003131557.1|	-	8.2e-56	188.3	0.0	1e-55	188.0	0.0	1.1	1	0	0	1	1	1	1	Proteasome	subunit
Proteasome_A_N	PF10584.4	gi|257053724|ref|YP_003131557.1|	-	2.1e-14	52.4	0.1	4.2e-14	51.5	0.1	1.5	1	0	0	1	1	1	1	Proteasome	subunit	A	N-terminal	signature
Proteasome	PF00227.21	gi|257053725|ref|YP_003131558.1|	-	2.5e-44	150.8	0.2	3e-44	150.6	0.2	1.0	1	0	0	1	1	1	1	Proteasome	subunit
TruD	PF01142.13	gi|257053726|ref|YP_003131559.1|	-	1.1e-88	297.4	0.0	1.1e-87	294.1	0.0	1.9	1	1	0	1	1	1	1	tRNA	pseudouridine	synthase	D	(TruD)
HTH_20	PF12840.2	gi|257053728|ref|YP_003131561.1|	-	0.00013	21.6	0.3	0.00025	20.7	0.0	1.6	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|257053728|ref|YP_003131561.1|	-	0.00039	20.0	0.0	0.0014	18.2	0.0	1.9	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
GntR	PF00392.16	gi|257053728|ref|YP_003131561.1|	-	0.004	16.5	0.0	0.01	15.2	0.0	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
RP-C	PF03428.8	gi|257053728|ref|YP_003131561.1|	-	0.0078	15.6	0.0	0.013	14.9	0.0	1.3	1	0	0	1	1	1	1	Replication	protein	C	N-terminal	domain
PadR	PF03551.9	gi|257053728|ref|YP_003131561.1|	-	0.033	13.9	0.0	0.063	13.0	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
MarR_2	PF12802.2	gi|257053728|ref|YP_003131561.1|	-	0.038	13.6	0.1	0.097	12.3	0.1	1.7	1	0	0	1	1	1	0	MarR	family
HTH_27	PF13463.1	gi|257053728|ref|YP_003131561.1|	-	0.08	13.2	0.0	0.19	12.0	0.0	1.7	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_24	PF13412.1	gi|257053728|ref|YP_003131561.1|	-	0.086	12.2	0.0	0.34	10.3	0.0	2.0	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
Replic_Relax	PF13814.1	gi|257053728|ref|YP_003131561.1|	-	0.11	12.3	0.1	0.15	11.8	0.1	1.2	1	0	0	1	1	1	0	Replication-relaxation
Staph_haemo	PF05480.6	gi|257053729|ref|YP_003131562.1|	-	0.061	13.0	0.1	0.11	12.2	0.1	1.3	1	0	0	1	1	1	0	Staphylococcus	haemolytic	protein
TrmB	PF01978.14	gi|257053730|ref|YP_003131563.1|	-	6.7e-09	35.3	0.0	2.3e-08	33.6	0.0	1.8	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.5	gi|257053730|ref|YP_003131563.1|	-	2.1e-05	24.0	2.1	4.6e-05	22.9	0.0	2.5	3	0	0	3	3	3	1	IclR	helix-turn-helix	domain
Penicillinase_R	PF03965.11	gi|257053730|ref|YP_003131563.1|	-	0.043	13.8	0.0	0.073	13.1	0.0	1.4	1	0	0	1	1	1	0	Penicillinase	repressor
HTH_27	PF13463.1	gi|257053730|ref|YP_003131563.1|	-	0.068	13.5	0.1	0.14	12.4	0.1	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
MdoG	PF04349.7	gi|257053730|ref|YP_003131563.1|	-	0.15	10.2	0.0	0.18	10.0	0.0	1.1	1	0	0	1	1	1	0	Periplasmic	glucan	biosynthesis	protein,	MdoG
MFS_1	PF07690.11	gi|257053731|ref|YP_003131564.1|	-	3.8e-14	52.1	60.8	6.5e-10	38.2	26.9	2.4	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
DUF1424	PF07232.6	gi|257053731|ref|YP_003131564.1|	-	0.2	10.4	0.0	0.33	9.6	0.0	1.3	1	0	0	1	1	1	0	Putative	rep	protein	(DUF1424)
DUF2103	PF09876.4	gi|257053732|ref|YP_003131565.1|	-	3.3e-43	145.6	0.4	6.7e-43	144.6	0.3	1.5	1	0	0	1	1	1	1	Predicted	metal-binding	protein	(DUF2103)
Ribosomal_L37ae	PF01780.14	gi|257053733|ref|YP_003131566.1|	-	3.7e-31	106.8	1.7	4.5e-31	106.5	1.2	1.0	1	0	0	1	1	1	1	Ribosomal	L37ae	protein	family
Zn_Tnp_IS1595	PF12760.2	gi|257053733|ref|YP_003131566.1|	-	0.0011	18.7	1.5	0.0018	18.0	1.0	1.4	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
Rubredoxin	PF00301.15	gi|257053733|ref|YP_003131566.1|	-	0.0015	18.3	2.2	0.94	9.4	0.1	2.2	2	0	0	2	2	2	2	Rubredoxin
zf-H2C2_2	PF13465.1	gi|257053733|ref|YP_003131566.1|	-	0.0023	18.1	1.1	0.86	10.0	0.1	2.2	2	0	0	2	2	2	2	Zinc-finger	double	domain
Zn-ribbon_8	PF09723.5	gi|257053733|ref|YP_003131566.1|	-	0.004	17.0	2.3	0.069	13.1	0.1	2.3	2	0	0	2	2	2	1	Zinc	ribbon	domain
OrfB_Zn_ribbon	PF07282.6	gi|257053733|ref|YP_003131566.1|	-	0.006	16.2	0.8	0.009	15.6	0.5	1.3	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
zf-C2H2	PF00096.21	gi|257053733|ref|YP_003131566.1|	-	0.043	14.1	3.5	1.2	9.6	0.3	2.2	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
zf-ribbon_3	PF13248.1	gi|257053733|ref|YP_003131566.1|	-	0.049	12.8	3.6	1.4	8.2	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-C2H2_4	PF13894.1	gi|257053733|ref|YP_003131566.1|	-	0.12	12.7	2.2	1.9	9.0	0.2	2.3	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zf-BED	PF02892.10	gi|257053733|ref|YP_003131566.1|	-	0.12	12.1	0.4	0.19	11.5	0.3	1.4	1	0	0	1	1	1	0	BED	zinc	finger
zf-CHCC	PF10276.4	gi|257053733|ref|YP_003131566.1|	-	0.17	11.7	4.7	0.38	10.6	0.5	2.2	2	0	0	2	2	2	0	Zinc-finger	domain
zf-C2H2_6	PF13912.1	gi|257053733|ref|YP_003131566.1|	-	0.18	11.7	2.5	10	6.1	0.2	2.2	2	0	0	2	2	2	0	C2H2-type	zinc	finger
TF_Zn_Ribbon	PF08271.7	gi|257053733|ref|YP_003131566.1|	-	0.36	10.1	2.7	0.62	9.4	1.9	1.4	1	0	0	1	1	1	0	TFIIB	zinc-binding
zf-C4_Topoisom	PF01396.14	gi|257053733|ref|YP_003131566.1|	-	0.5	9.9	2.9	1.3	8.5	2.1	1.8	1	1	0	1	1	1	0	Topoisomerase	DNA	binding	C4	zinc	finger
zinc_ribbon_2	PF13240.1	gi|257053733|ref|YP_003131566.1|	-	0.52	9.8	6.6	2.3	7.8	0.3	2.2	1	1	1	2	2	2	0	zinc-ribbon	domain
Zn_ribbon_recom	PF13408.1	gi|257053733|ref|YP_003131566.1|	-	1.9	8.8	4.6	1.6	9.0	0.7	2.2	1	1	1	2	2	2	0	Recombinase	zinc	beta	ribbon	domain
zf-ISL3	PF14690.1	gi|257053733|ref|YP_003131566.1|	-	3.6	7.6	5.2	1.1	9.3	0.3	2.1	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
DNA_RNApol_7kD	PF03604.8	gi|257053734|ref|YP_003131567.1|	-	2.4e-10	39.6	6.3	2.8e-10	39.4	4.3	1.1	1	0	0	1	1	1	1	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-ribbon_3	PF13248.1	gi|257053734|ref|YP_003131567.1|	-	0.00038	19.5	0.2	0.026	13.7	0.0	2.0	2	0	0	2	2	2	1	zinc-ribbon	domain
HypA	PF01155.14	gi|257053734|ref|YP_003131567.1|	-	0.00048	19.7	0.4	0.00048	19.7	0.3	1.1	1	0	0	1	1	1	1	Hydrogenase	expression/synthesis	hypA	family
A2L_zn_ribbon	PF08792.5	gi|257053734|ref|YP_003131567.1|	-	0.0007	18.9	1.2	0.046	13.1	2.0	2.0	1	1	1	2	2	2	2	A2L	zinc	ribbon	domain
DUF329	PF03884.9	gi|257053734|ref|YP_003131567.1|	-	0.0011	18.4	0.6	0.46	10.0	0.0	2.0	1	1	1	2	2	2	2	Domain	of	unknown	function	(DUF329)
TF_Zn_Ribbon	PF08271.7	gi|257053734|ref|YP_003131567.1|	-	0.0023	17.2	1.0	0.003	16.8	0.7	1.3	1	0	0	1	1	1	1	TFIIB	zinc-binding
Zn_Tnp_IS1595	PF12760.2	gi|257053734|ref|YP_003131567.1|	-	0.0031	17.2	4.6	0.095	12.5	0.1	2.1	2	0	0	2	2	2	1	Transposase	zinc-ribbon	domain
zf-CHCC	PF10276.4	gi|257053734|ref|YP_003131567.1|	-	0.0061	16.3	0.2	0.01	15.6	0.1	1.4	1	0	0	1	1	1	1	Zinc-finger	domain
zinc_ribbon_2	PF13240.1	gi|257053734|ref|YP_003131567.1|	-	0.0098	15.3	3.8	0.075	12.5	2.6	2.0	1	1	0	1	1	1	1	zinc-ribbon	domain
Cys_rich_CPXG	PF14255.1	gi|257053734|ref|YP_003131567.1|	-	0.011	15.5	0.8	0.042	13.6	0.1	1.9	2	0	0	2	2	2	0	Cysteine-rich	CPXCG
DZR	PF12773.2	gi|257053734|ref|YP_003131567.1|	-	0.014	15.2	0.7	0.031	14.0	0.5	1.6	1	1	0	1	1	1	0	Double	zinc	ribbon
DUF951	PF06107.6	gi|257053734|ref|YP_003131567.1|	-	0.015	14.8	1.7	1.1	8.8	0.1	2.1	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF951)
zf-ISL3	PF14690.1	gi|257053734|ref|YP_003131567.1|	-	0.023	14.7	1.2	0.18	11.8	0.1	2.0	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
Sgf11	PF08209.6	gi|257053734|ref|YP_003131567.1|	-	0.033	13.4	3.3	0.81	9.0	0.3	2.2	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
Prok-RING_1	PF14446.1	gi|257053734|ref|YP_003131567.1|	-	0.044	13.5	1.6	0.18	11.5	1.2	1.7	1	1	1	2	2	2	0	Prokaryotic	RING	finger	family	1
zf-HIT	PF04438.11	gi|257053734|ref|YP_003131567.1|	-	0.048	13.3	3.5	0.91	9.2	0.4	2.0	2	0	0	2	2	2	0	HIT	zinc	finger
zf-Di19	PF05605.7	gi|257053734|ref|YP_003131567.1|	-	0.061	13.4	0.2	0.61	10.2	0.0	2.0	2	0	0	2	2	2	0	Drought	induced	19	protein	(Di19),	zinc-binding
zf-AN1	PF01428.11	gi|257053734|ref|YP_003131567.1|	-	0.063	13.1	0.9	0.15	11.9	0.7	1.6	1	1	1	2	2	2	0	AN1-like	Zinc	finger
zinc-ribbons_6	PF07191.7	gi|257053734|ref|YP_003131567.1|	-	0.077	12.7	0.4	0.11	12.3	0.3	1.3	1	1	0	1	1	1	0	zinc-ribbons
TFIIS_C	PF01096.13	gi|257053734|ref|YP_003131567.1|	-	0.078	12.6	1.7	4.7	6.9	0.0	2.1	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
Zn_ribbon_recom	PF13408.1	gi|257053734|ref|YP_003131567.1|	-	0.085	13.1	1.5	1.2	9.4	0.1	2.1	2	0	0	2	2	2	0	Recombinase	zinc	beta	ribbon	domain
Spt4	PF06093.8	gi|257053734|ref|YP_003131567.1|	-	0.09	12.6	0.1	0.1	12.4	0.1	1.0	1	0	0	1	1	1	0	Spt4/RpoE2	zinc	finger
zf-C2H2_4	PF13894.1	gi|257053734|ref|YP_003131567.1|	-	0.092	13.1	1.2	2.3	8.7	0.0	2.1	2	0	0	2	2	2	0	C2H2-type	zinc	finger
CpXC	PF14353.1	gi|257053734|ref|YP_003131567.1|	-	0.097	12.6	1.4	1.2	9.0	0.0	2.0	1	1	1	2	2	2	0	CpXC	protein
Lar_restr_allev	PF14354.1	gi|257053734|ref|YP_003131567.1|	-	0.11	12.7	0.7	0.34	11.2	0.5	1.8	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
RNHCP	PF12647.2	gi|257053734|ref|YP_003131567.1|	-	0.13	12.1	0.6	0.18	11.6	0.4	1.3	1	1	0	1	1	1	0	RNHCP	domain
DUF3268	PF11672.3	gi|257053734|ref|YP_003131567.1|	-	0.15	12.1	0.9	2.9	8.0	0.0	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3268)
C1_1	PF00130.17	gi|257053734|ref|YP_003131567.1|	-	0.15	11.7	1.0	0.22	11.2	0.7	1.4	1	1	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
zinc_ribbon_4	PF13717.1	gi|257053734|ref|YP_003131567.1|	-	0.16	11.6	5.7	6.4	6.5	4.0	2.2	1	1	0	1	1	1	0	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.6	gi|257053734|ref|YP_003131567.1|	-	0.17	11.5	2.9	0.25	11.0	2.0	1.4	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zf-TFIIB	PF13453.1	gi|257053734|ref|YP_003131567.1|	-	0.18	11.0	2.0	0.37	10.0	1.4	1.5	1	1	1	2	2	2	0	Transcription	factor	zinc-finger
zf-RING_3	PF14369.1	gi|257053734|ref|YP_003131567.1|	-	0.2	11.6	1.7	0.32	11.0	1.2	1.4	1	0	0	1	1	1	0	zinc-finger
zf-C4_Topoisom	PF01396.14	gi|257053734|ref|YP_003131567.1|	-	0.22	11.0	1.7	0.49	9.9	0.1	1.9	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
zinc_ribbon_5	PF13719.1	gi|257053734|ref|YP_003131567.1|	-	0.24	10.9	6.2	11	5.7	4.3	2.2	1	1	0	1	1	1	0	zinc-ribbon	domain
Desulfoferrod_N	PF06397.7	gi|257053734|ref|YP_003131567.1|	-	0.41	10.0	2.2	3.9	6.9	0.1	2.1	1	1	1	2	2	2	0	Desulfoferrodoxin,	N-terminal	domain
Zn-ribbon_8	PF09723.5	gi|257053734|ref|YP_003131567.1|	-	0.42	10.6	5.2	4.7	7.2	3.5	2.0	1	1	1	2	2	2	0	Zinc	ribbon	domain
zf-NADH-PPase	PF09297.6	gi|257053734|ref|YP_003131567.1|	-	0.87	9.1	0.1	0.87	9.1	0.1	2.1	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
zf-C2HC_2	PF13913.1	gi|257053734|ref|YP_003131567.1|	-	1.1	9.0	5.0	6.2	6.6	0.7	2.2	2	0	0	2	2	2	0	zinc-finger	of	a	C2HC-type
zf-C2H2	PF00096.21	gi|257053734|ref|YP_003131567.1|	-	1.5	9.3	4.1	8.8	6.8	0.1	2.1	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
Mu-like_Com	PF10122.4	gi|257053734|ref|YP_003131567.1|	-	3.7	6.6	7.3	6.2	5.9	1.0	2.1	1	1	1	2	2	2	0	Mu-like	prophage	protein	Com
UPF0547	PF10571.4	gi|257053734|ref|YP_003131567.1|	-	4.8	6.9	7.2	0.62	9.8	1.3	1.9	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Pcc1	PF09341.5	gi|257053735|ref|YP_003131568.1|	-	2.2e-12	46.8	0.0	2.5e-12	46.6	0.0	1.0	1	0	0	1	1	1	1	Transcription	factor	Pcc1
Prefoldin_2	PF01920.15	gi|257053737|ref|YP_003131570.1|	-	1.2e-25	89.3	17.6	1.3e-25	89.1	12.2	1.0	1	0	0	1	1	1	1	Prefoldin	subunit
DUF3584	PF12128.3	gi|257053737|ref|YP_003131570.1|	-	0.00029	18.3	7.3	0.00037	18.0	5.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3584)
ALIX_LYPXL_bnd	PF13949.1	gi|257053737|ref|YP_003131570.1|	-	0.001	18.1	7.2	0.0014	17.6	5.0	1.1	1	0	0	1	1	1	1	ALIX	V-shaped	domain	binding	to	HIV
Laminin_I	PF06008.9	gi|257053737|ref|YP_003131570.1|	-	0.0048	16.2	9.6	0.3	10.3	0.2	2.1	2	0	0	2	2	2	2	Laminin	Domain	I
AAA_27	PF13514.1	gi|257053737|ref|YP_003131570.1|	-	0.0076	14.0	8.5	0.01	13.5	5.9	1.1	1	0	0	1	1	1	1	AAA	domain
GAS	PF13851.1	gi|257053737|ref|YP_003131570.1|	-	0.011	14.9	10.3	0.019	14.1	7.1	1.2	1	0	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
Prefoldin	PF02996.12	gi|257053737|ref|YP_003131570.1|	-	0.016	14.8	15.5	0.052	13.1	2.2	2.5	1	1	1	2	2	2	0	Prefoldin	subunit
Cortex-I_coil	PF09304.5	gi|257053737|ref|YP_003131570.1|	-	0.043	13.8	2.9	0.043	13.8	2.0	2.1	1	1	1	2	2	2	0	Cortexillin	I,	coiled	coil
TraF_2	PF13729.1	gi|257053737|ref|YP_003131570.1|	-	0.1	11.3	7.6	0.11	11.2	0.2	2.0	1	1	1	2	2	2	0	F	plasmid	transfer	operon,	TraF,	protein
Radical_SAM_N	PF08497.5	gi|257053737|ref|YP_003131570.1|	-	0.1	11.4	1.7	0.13	11.2	1.2	1.0	1	0	0	1	1	1	0	Radical	SAM	N-terminal
Phasin	PF05597.6	gi|257053737|ref|YP_003131570.1|	-	0.13	11.9	5.9	3.4	7.4	0.7	2.2	2	0	0	2	2	2	0	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
PilJ	PF13675.1	gi|257053737|ref|YP_003131570.1|	-	0.22	11.8	10.8	0.5	10.6	0.4	2.3	1	1	2	3	3	3	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
Seryl_tRNA_N	PF02403.17	gi|257053737|ref|YP_003131570.1|	-	0.25	11.3	10.9	0.91	9.5	0.5	2.1	2	0	0	2	2	2	0	Seryl-tRNA	synthetase	N-terminal	domain
Laminin_II	PF06009.7	gi|257053737|ref|YP_003131570.1|	-	0.34	10.6	9.2	0.93	9.2	6.4	1.6	1	1	0	1	1	1	0	Laminin	Domain	II
DUF4140	PF13600.1	gi|257053737|ref|YP_003131570.1|	-	0.34	11.3	12.7	0.37	11.2	0.5	2.2	2	0	0	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
DHquinase_I	PF01487.10	gi|257053737|ref|YP_003131570.1|	-	0.48	10.0	5.3	0.07	12.7	1.0	1.5	2	0	0	2	2	1	0	Type	I	3-dehydroquinase
EzrA	PF06160.7	gi|257053737|ref|YP_003131570.1|	-	0.56	8.3	13.0	0.8	7.8	9.0	1.2	1	0	0	1	1	1	0	Septation	ring	formation	regulator,	EzrA
DUF812	PF05667.6	gi|257053737|ref|YP_003131570.1|	-	0.57	8.6	10.0	0.86	8.0	6.9	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF812)
DUF1978	PF09321.5	gi|257053737|ref|YP_003131570.1|	-	0.59	9.5	14.3	0.98	8.8	9.9	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1978)
Sigma70_ner	PF04546.8	gi|257053737|ref|YP_003131570.1|	-	0.63	9.6	16.0	0.07	12.7	2.2	2.0	1	1	1	2	2	2	0	Sigma-70,	non-essential	region
CDC37_N	PF03234.9	gi|257053737|ref|YP_003131570.1|	-	0.66	10.2	9.8	0.85	9.9	6.8	1.1	1	0	0	1	1	1	0	Cdc37	N	terminal	kinase	binding
DUF4164	PF13747.1	gi|257053737|ref|YP_003131570.1|	-	0.71	10.0	12.3	0.67	10.1	1.0	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4164)
DUF4446	PF14584.1	gi|257053737|ref|YP_003131570.1|	-	0.84	9.4	6.4	1.2	8.9	0.2	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4446)
Baculo_PEP_C	PF04513.7	gi|257053737|ref|YP_003131570.1|	-	0.94	9.3	9.2	4.2	7.2	6.3	1.8	1	1	0	1	1	1	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Syntaxin-6_N	PF09177.6	gi|257053737|ref|YP_003131570.1|	-	1.2	9.6	11.1	0.55	10.6	0.5	2.2	1	1	1	2	2	2	0	Syntaxin	6,	N-terminal
WXG100	PF06013.7	gi|257053737|ref|YP_003131570.1|	-	1.4	8.9	11.7	11	6.1	4.4	2.6	2	1	0	2	2	2	0	Proteins	of	100	residues	with	WXG
NPV_P10	PF05531.7	gi|257053737|ref|YP_003131570.1|	-	1.8	8.8	9.4	2.5	8.3	0.2	2.2	2	0	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
XhlA	PF10779.4	gi|257053737|ref|YP_003131570.1|	-	2	8.3	12.2	0.29	11.0	1.0	2.3	2	0	0	2	2	2	0	Haemolysin	XhlA
BLOC1_2	PF10046.4	gi|257053737|ref|YP_003131570.1|	-	2	8.5	10.5	4.9	7.3	0.5	2.1	2	0	0	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
SlyX	PF04102.7	gi|257053737|ref|YP_003131570.1|	-	2.2	8.7	11.3	1.1	9.6	0.5	2.4	2	0	0	2	2	2	0	SlyX
DUF3552	PF12072.3	gi|257053737|ref|YP_003131570.1|	-	2.2	7.4	16.0	0.76	8.9	2.8	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3552)
TMF_DNA_bd	PF12329.3	gi|257053737|ref|YP_003131570.1|	-	2.4	8.0	17.7	0.19	11.5	1.6	2.3	2	0	0	2	2	2	0	TATA	element	modulatory	factor	1	DNA	binding
Plasmid_stabil	PF05016.9	gi|257053737|ref|YP_003131570.1|	-	2.4	8.5	4.9	20	5.6	1.3	2.2	1	1	1	2	2	2	0	Plasmid	stabilisation	system	protein
Fib_alpha	PF08702.5	gi|257053737|ref|YP_003131570.1|	-	2.5	8.2	8.9	1.8	8.6	0.3	2.1	1	1	1	2	2	2	0	Fibrinogen	alpha/beta	chain	family
Spectrin	PF00435.16	gi|257053737|ref|YP_003131570.1|	-	2.8	8.2	14.4	11	6.3	9.7	1.9	1	1	0	1	1	1	0	Spectrin	repeat
TPR_MLP1_2	PF07926.7	gi|257053737|ref|YP_003131570.1|	-	2.9	7.6	19.5	24	4.6	13.5	1.9	1	1	0	1	1	1	0	TPR/MLP1/MLP2-like	protein
ADIP	PF11559.3	gi|257053737|ref|YP_003131570.1|	-	3	7.7	14.6	1.3	8.9	0.9	2.0	2	0	0	2	2	2	0	Afadin-	and	alpha	-actinin-Binding
DUF1664	PF07889.7	gi|257053737|ref|YP_003131570.1|	-	3	7.6	9.1	0.88	9.3	0.5	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1664)
Tropomyosin_1	PF12718.2	gi|257053737|ref|YP_003131570.1|	-	3.3	7.5	25.2	51	3.6	17.5	2.1	1	1	0	1	1	1	0	Tropomyosin	like
V_ATPase_I	PF01496.14	gi|257053737|ref|YP_003131570.1|	-	3.4	5.4	13.2	11	3.7	9.2	1.6	1	1	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
DUF3450	PF11932.3	gi|257053737|ref|YP_003131570.1|	-	4.2	6.5	18.0	3.2	6.9	1.0	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3450)
Fzo_mitofusin	PF04799.8	gi|257053737|ref|YP_003131570.1|	-	4.4	6.6	9.6	4.9	6.4	1.0	2.1	1	1	1	2	2	2	0	fzo-like	conserved	region
FbpA	PF05833.6	gi|257053737|ref|YP_003131570.1|	-	4.9	5.5	11.1	8.2	4.8	7.4	1.4	1	1	0	1	1	1	0	Fibronectin-binding	protein	A	N-terminus	(FbpA)
DivIC	PF04977.10	gi|257053737|ref|YP_003131570.1|	-	4.9	6.7	15.6	0.99	8.9	1.4	2.2	2	0	0	2	2	2	0	Septum	formation	initiator
DUF948	PF06103.6	gi|257053737|ref|YP_003131570.1|	-	5	7.0	8.8	1.8	8.5	0.3	2.2	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
PspA_IM30	PF04012.7	gi|257053737|ref|YP_003131570.1|	-	5.3	6.3	17.2	12	5.1	11.9	1.5	1	1	0	1	1	1	0	PspA/IM30	family
DUF2968	PF11180.3	gi|257053737|ref|YP_003131570.1|	-	5.4	6.3	13.7	11	5.3	5.1	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2968)
COG2	PF06148.6	gi|257053737|ref|YP_003131570.1|	-	6	6.7	10.3	4.7	7.0	1.0	2.1	1	1	1	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
IncA	PF04156.9	gi|257053737|ref|YP_003131570.1|	-	6.6	6.2	25.1	34	3.9	17.4	1.8	1	1	0	1	1	1	0	IncA	protein
DUF848	PF05852.6	gi|257053737|ref|YP_003131570.1|	-	6.9	6.5	15.7	61	3.4	11.3	1.9	1	1	0	1	1	1	0	Gammaherpesvirus	protein	of	unknown	function	(DUF848)
bZIP_1	PF00170.16	gi|257053737|ref|YP_003131570.1|	-	7.3	6.6	13.3	0.36	10.8	0.9	2.4	2	1	0	2	2	2	0	bZIP	transcription	factor
MAD	PF05557.8	gi|257053737|ref|YP_003131570.1|	-	7.4	4.5	15.8	13	3.7	10.9	1.3	1	1	0	1	1	1	0	Mitotic	checkpoint	protein
DUF2203	PF09969.4	gi|257053737|ref|YP_003131570.1|	-	7.7	6.7	9.2	70	3.6	6.4	1.9	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2203)
DUF607	PF04678.8	gi|257053737|ref|YP_003131570.1|	-	7.8	6.3	7.5	16	5.3	3.6	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function,	DUF607
DUF4657	PF15552.1	gi|257053737|ref|YP_003131570.1|	-	7.9	5.6	8.6	9.9	5.3	5.9	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4657)
DUF964	PF06133.6	gi|257053737|ref|YP_003131570.1|	-	8.2	6.5	18.5	3.2	7.8	8.4	2.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF964)
Spc24	PF08286.6	gi|257053737|ref|YP_003131570.1|	-	8.3	6.1	16.7	1.5	8.5	1.6	2.2	1	1	1	2	2	2	0	Spc24	subunit	of	Ndc80
ERM	PF00769.14	gi|257053737|ref|YP_003131570.1|	-	8.3	5.8	20.9	15	5.0	14.5	1.3	1	1	0	1	1	1	0	Ezrin/radixin/moesin	family
FlxA	PF14282.1	gi|257053737|ref|YP_003131570.1|	-	8.8	6.3	16.6	2.4	8.1	0.5	2.1	2	0	0	2	2	2	0	FlxA-like	protein
YlqD	PF11068.3	gi|257053737|ref|YP_003131570.1|	-	9.1	6.3	16.8	2.2	8.3	1.2	2.1	1	1	1	2	2	2	0	YlqD	protein
Tektin	PF03148.9	gi|257053737|ref|YP_003131570.1|	-	9.7	4.6	15.7	39	2.6	10.9	1.7	1	1	0	1	1	1	0	Tektin	family
DUF3194	PF11419.3	gi|257053738|ref|YP_003131571.1|	-	7.2e-05	22.9	2.1	8.7e-05	22.6	1.5	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3194)
GTP_EFTU	PF00009.22	gi|257053740|ref|YP_003131573.1|	-	2.6e-32	111.7	0.0	3.2e-31	108.2	0.0	2.2	1	1	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
IF-2	PF11987.3	gi|257053740|ref|YP_003131573.1|	-	2.9e-22	78.5	1.2	8.2e-22	77.1	0.9	1.8	1	0	0	1	1	1	1	Translation-initiation	factor	2
GTP_EFTU_D2	PF03144.20	gi|257053740|ref|YP_003131573.1|	-	2.3e-13	50.0	9.0	1.1e-09	38.2	0.6	3.2	2	1	0	2	2	2	2	Elongation	factor	Tu	domain	2
GTP_EFTU_D4	PF14578.1	gi|257053740|ref|YP_003131573.1|	-	1.9e-12	46.6	0.0	6.6e-12	44.9	0.0	2.0	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	4
MMR_HSR1	PF01926.18	gi|257053740|ref|YP_003131573.1|	-	8.2e-07	28.9	0.0	2.3e-06	27.5	0.0	1.8	2	0	0	2	2	2	1	50S	ribosome-binding	GTPase
MobB	PF03205.9	gi|257053740|ref|YP_003131573.1|	-	0.0085	15.8	0.2	0.029	14.0	0.1	1.9	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Dynamin_N	PF00350.18	gi|257053740|ref|YP_003131573.1|	-	0.0086	15.9	0.2	0.53	10.0	0.0	2.5	2	0	0	2	2	2	1	Dynamin	family
Miro	PF08477.8	gi|257053740|ref|YP_003131573.1|	-	0.01	16.3	0.0	0.024	15.1	0.0	1.6	1	0	0	1	1	1	0	Miro-like	protein
ATP_bind_1	PF03029.12	gi|257053740|ref|YP_003131573.1|	-	0.02	14.4	0.0	0.085	12.3	0.0	2.0	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
OrfB_IS605	PF01385.14	gi|257053741|ref|YP_003131574.1|	-	1e-26	93.7	1.1	1e-26	93.7	0.8	1.9	2	0	0	2	2	2	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.6	gi|257053741|ref|YP_003131574.1|	-	1.7e-19	69.2	0.1	3.3e-19	68.3	0.0	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
HTH_OrfB_IS605	PF12323.3	gi|257053741|ref|YP_003131574.1|	-	3.1e-05	23.2	0.1	8e-05	21.8	0.1	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
IncFII_repA	PF02387.10	gi|257053741|ref|YP_003131574.1|	-	0.041	13.0	2.5	0.089	11.9	0.9	1.9	2	0	0	2	2	2	0	IncFII	RepA	protein	family
Zn_Tnp_IS91	PF14319.1	gi|257053741|ref|YP_003131574.1|	-	0.081	12.4	0.3	0.22	11.0	0.2	1.7	1	0	0	1	1	1	0	Transposase	zinc-binding	domain
DZR	PF12773.2	gi|257053741|ref|YP_003131574.1|	-	0.094	12.5	1.1	0.17	11.7	0.7	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-ribbon_3	PF13248.1	gi|257053741|ref|YP_003131574.1|	-	0.2	10.9	1.9	1.5	8.1	0.2	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
UPF0547	PF10571.4	gi|257053741|ref|YP_003131574.1|	-	0.26	11.0	2.1	2.6	7.8	0.2	2.4	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Ribosomal_L37e	PF01907.14	gi|257053741|ref|YP_003131574.1|	-	0.44	10.3	2.9	0.37	10.6	0.2	2.1	2	0	0	2	2	2	0	Ribosomal	protein	L37e
DUF1610	PF07754.6	gi|257053741|ref|YP_003131574.1|	-	0.54	10.4	2.5	1.8	8.7	1.8	1.9	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1610)
PRC	PF05239.11	gi|257053742|ref|YP_003131575.1|	-	1.7e-10	40.6	0.1	1.9e-10	40.4	0.0	1.1	1	0	0	1	1	1	1	PRC-barrel	domain
Rad50_zn_hook	PF04423.9	gi|257053743|ref|YP_003131576.1|	-	0.00083	18.7	6.1	0.077	12.4	0.4	3.2	3	1	1	4	4	3	2	Rad50	zinc	hook	motif
PIN	PF01850.16	gi|257053743|ref|YP_003131576.1|	-	0.0013	19.0	1.5	0.0073	16.6	1.0	1.9	1	1	0	1	1	1	1	PIN	domain
zf-C3HC4_3	PF13920.1	gi|257053743|ref|YP_003131576.1|	-	0.0022	17.6	0.7	0.0032	17.0	0.5	1.2	1	0	0	1	1	1	1	Zinc	finger,	C3HC4	type	(RING	finger)
DZR	PF12773.2	gi|257053743|ref|YP_003131576.1|	-	0.0036	17.0	1.4	0.0055	16.4	0.9	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
DUF4411	PF14367.1	gi|257053743|ref|YP_003131576.1|	-	0.0041	16.8	0.1	0.013	15.2	0.1	1.8	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4411)
Ribosomal_L37e	PF01907.14	gi|257053743|ref|YP_003131576.1|	-	0.0055	16.4	0.6	0.0084	15.8	0.4	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L37e
zf-P11	PF03854.9	gi|257053743|ref|YP_003131576.1|	-	0.0064	15.9	0.0	0.0098	15.3	0.0	1.2	1	0	0	1	1	1	1	P-11	zinc	finger
UPF0278	PF08745.6	gi|257053743|ref|YP_003131576.1|	-	0.012	14.8	0.4	0.02	14.1	0.1	1.5	2	0	0	2	2	2	0	UPF0278	family
zf-NADH-PPase	PF09297.6	gi|257053743|ref|YP_003131576.1|	-	0.013	14.9	3.1	1.1	8.8	0.4	2.5	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
DNA_ligase_ZBD	PF03119.11	gi|257053743|ref|YP_003131576.1|	-	0.016	14.9	2.3	0.024	14.3	0.3	2.2	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
HypA	PF01155.14	gi|257053743|ref|YP_003131576.1|	-	0.041	13.5	1.5	0.071	12.7	1.0	1.6	1	1	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
zf-RING_5	PF14634.1	gi|257053743|ref|YP_003131576.1|	-	0.061	13.0	1.8	0.088	12.5	1.3	1.2	1	0	0	1	1	1	0	zinc-RING	finger	domain
Zn-ribbon_8	PF09723.5	gi|257053743|ref|YP_003131576.1|	-	0.069	13.1	5.5	0.97	9.4	3.8	2.3	1	1	0	1	1	1	0	Zinc	ribbon	domain
zinc-ribbons_6	PF07191.7	gi|257053743|ref|YP_003131576.1|	-	0.071	12.9	0.5	0.12	12.1	0.4	1.3	1	0	0	1	1	1	0	zinc-ribbons
zf-C2H2	PF00096.21	gi|257053743|ref|YP_003131576.1|	-	0.071	13.4	2.8	2.6	8.5	0.2	2.3	1	1	1	2	2	2	0	Zinc	finger,	C2H2	type
NOB1_Zn_bind	PF08772.6	gi|257053743|ref|YP_003131576.1|	-	0.074	12.8	0.2	0.14	11.9	0.2	1.5	1	0	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
Prok-RING_1	PF14446.1	gi|257053743|ref|YP_003131576.1|	-	0.078	12.7	0.6	0.13	12.0	0.4	1.3	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
zf-ribbon_3	PF13248.1	gi|257053743|ref|YP_003131576.1|	-	0.097	11.9	3.0	0.17	11.1	2.1	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
SprT-like	PF10263.4	gi|257053743|ref|YP_003131576.1|	-	0.13	11.9	0.0	0.16	11.6	0.0	1.3	1	0	0	1	1	1	0	SprT-like	family
Prok-RING_4	PF14447.1	gi|257053743|ref|YP_003131576.1|	-	0.13	11.8	2.2	0.24	10.9	1.5	1.5	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	4
zf-C2H2_4	PF13894.1	gi|257053743|ref|YP_003131576.1|	-	0.13	12.6	2.1	14	6.2	0.1	2.4	1	1	1	2	2	2	0	C2H2-type	zinc	finger
zinc_ribbon_2	PF13240.1	gi|257053743|ref|YP_003131576.1|	-	0.25	10.8	3.4	0.88	9.1	2.4	2.0	1	1	0	1	1	1	0	zinc-ribbon	domain
Nudix_N_2	PF14803.1	gi|257053743|ref|YP_003131576.1|	-	0.34	10.6	5.5	2.4	7.9	0.2	3.1	3	0	0	3	3	3	0	Nudix	N-terminal
zf-C2HC_2	PF13913.1	gi|257053743|ref|YP_003131576.1|	-	1.1	9.0	8.0	0.38	10.4	0.5	2.2	2	0	0	2	2	2	0	zinc-finger	of	a	C2HC-type
RHH_1	PF01402.16	gi|257053744|ref|YP_003131577.1|	-	0.0049	16.7	0.2	0.007	16.2	0.1	1.2	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
IF2_N	PF04760.10	gi|257053744|ref|YP_003131577.1|	-	0.04	13.5	0.2	0.11	12.1	0.0	1.7	1	1	1	2	2	2	0	Translation	initiation	factor	IF-2,	N-terminal	region
DUF3650	PF12368.3	gi|257053744|ref|YP_003131577.1|	-	0.11	11.9	0.3	0.15	11.5	0.2	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3650)
RepB-RCR_reg	PF10723.4	gi|257053744|ref|YP_003131577.1|	-	0.12	12.0	0.0	0.15	11.8	0.0	1.1	1	0	0	1	1	1	0	Replication	regulatory	protein	RepB
AHS1	PF02682.11	gi|257053744|ref|YP_003131577.1|	-	0.13	11.6	0.0	0.16	11.4	0.0	1.1	1	0	0	1	1	1	0	Allophanate	hydrolase	subunit	1
Abi	PF02517.11	gi|257053745|ref|YP_003131578.1|	-	3.5e-16	59.0	3.5	3.5e-16	59.0	2.4	2.1	2	1	0	2	2	2	1	CAAX	protease	self-immunity
BCHF	PF07284.6	gi|257053745|ref|YP_003131578.1|	-	0.2	11.5	0.1	0.2	11.5	0.1	2.8	3	1	1	4	4	4	0	2-vinyl	bacteriochlorophyllide	hydratase	(BCHF)
Peptidase_M50	PF02163.17	gi|257053746|ref|YP_003131579.1|	-	0.0012	17.8	0.5	0.0023	16.9	0.3	1.4	1	1	0	1	1	1	1	Peptidase	family	M50
Yip1	PF04893.12	gi|257053746|ref|YP_003131579.1|	-	0.0026	17.3	10.0	0.0036	16.8	6.9	1.3	1	0	0	1	1	1	1	Yip1	domain
DUF4131	PF13567.1	gi|257053746|ref|YP_003131579.1|	-	1.5	8.1	8.0	6.4	6.1	5.5	2.0	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
FtsX	PF02687.16	gi|257053746|ref|YP_003131579.1|	-	2.5	7.8	10.0	0.78	9.5	2.7	2.2	2	0	0	2	2	2	0	FtsX-like	permease	family
IMPDH	PF00478.20	gi|257053748|ref|YP_003131581.1|	-	1.4e-102	343.2	2.3	2.2e-102	342.5	1.6	1.3	1	1	0	1	1	1	1	IMP	dehydrogenase	/	GMP	reductase	domain
NMO	PF03060.10	gi|257053748|ref|YP_003131581.1|	-	1.8e-10	40.4	12.3	4.7e-09	35.8	8.5	2.2	1	1	0	1	1	1	1	Nitronate	monooxygenase
FMN_dh	PF01070.13	gi|257053748|ref|YP_003131581.1|	-	6.2e-09	35.1	8.5	1.5e-08	33.9	5.0	1.9	1	1	1	2	2	2	1	FMN-dependent	dehydrogenase
His_biosynth	PF00977.16	gi|257053748|ref|YP_003131581.1|	-	1.3e-05	24.5	1.5	0.0024	17.2	0.0	2.9	3	1	1	4	4	4	2	Histidine	biosynthesis	protein
DHO_dh	PF01180.16	gi|257053748|ref|YP_003131581.1|	-	0.0002	20.3	1.4	0.00027	19.9	0.3	1.6	2	0	0	2	2	2	1	Dihydroorotate	dehydrogenase
Dus	PF01207.12	gi|257053748|ref|YP_003131581.1|	-	0.00055	18.8	0.1	0.0011	17.8	0.1	1.5	1	0	0	1	1	1	1	Dihydrouridine	synthase	(Dus)
ThiG	PF05690.9	gi|257053748|ref|YP_003131581.1|	-	0.0013	17.9	1.3	0.0013	17.9	0.9	2.2	2	0	0	2	2	2	1	Thiazole	biosynthesis	protein	ThiG
QRPTase_C	PF01729.14	gi|257053748|ref|YP_003131581.1|	-	0.0052	16.3	0.2	0.2	11.1	0.1	2.3	2	0	0	2	2	2	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
Glu_synthase	PF01645.12	gi|257053748|ref|YP_003131581.1|	-	0.0071	15.2	1.6	0.014	14.3	1.1	1.5	1	1	0	1	1	1	1	Conserved	region	in	glutamate	synthase
PcrB	PF01884.12	gi|257053748|ref|YP_003131581.1|	-	0.014	14.7	7.4	0.028	13.6	0.2	2.6	2	1	0	2	2	2	0	PcrB	family
PepSY_2	PF13670.1	gi|257053748|ref|YP_003131581.1|	-	0.02	14.7	0.0	0.078	12.8	0.0	2.0	1	0	0	1	1	1	0	Peptidase	propeptide	and	YPEB	domain
TMP-TENI	PF02581.12	gi|257053748|ref|YP_003131581.1|	-	0.041	12.9	4.4	0.11	11.5	2.9	1.9	1	1	1	2	2	2	0	Thiamine	monophosphate	synthase/TENI
NanE	PF04131.9	gi|257053748|ref|YP_003131581.1|	-	0.058	12.3	1.5	0.85	8.5	0.7	2.6	1	1	1	2	2	2	0	Putative	N-acetylmannosamine-6-phosphate	epimerase
SecD_SecF	PF02355.11	gi|257053749|ref|YP_003131582.1|	-	3.3e-27	94.9	15.0	3.3e-27	94.9	10.4	1.4	2	0	0	2	2	2	1	Protein	export	membrane	protein
Sec_GG	PF07549.9	gi|257053749|ref|YP_003131582.1|	-	4.8e-08	31.7	0.0	1.3e-07	30.4	0.0	1.8	1	0	0	1	1	1	1	SecD/SecF	GG	Motif
Patched	PF02460.13	gi|257053749|ref|YP_003131582.1|	-	0.81	7.5	14.5	1.2	6.9	10.0	1.2	1	0	0	1	1	1	0	Patched	family
ACR_tran	PF00873.14	gi|257053749|ref|YP_003131582.1|	-	3.6	4.8	18.2	1	6.7	8.7	2.0	1	1	1	2	2	2	0	AcrB/AcrD/AcrF	family
SecD_SecF	PF02355.11	gi|257053750|ref|YP_003131583.1|	-	5.4e-18	64.8	3.6	9.5e-18	64.0	2.5	1.3	1	0	0	1	1	1	1	Protein	export	membrane	protein
MMPL	PF03176.10	gi|257053750|ref|YP_003131583.1|	-	0.00035	19.4	14.6	0.00068	18.4	10.1	1.4	1	0	0	1	1	1	1	MMPL	family
DUF2197	PF09963.4	gi|257053751|ref|YP_003131584.1|	-	0.0098	15.8	0.6	0.73	9.8	0.1	2.1	2	0	0	2	2	2	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2197)
Zn-ribbon_8	PF09723.5	gi|257053751|ref|YP_003131584.1|	-	0.02	14.8	2.9	1.3	9.0	0.2	2.1	2	0	0	2	2	2	0	Zinc	ribbon	domain
zf-FPG_IleRS	PF06827.9	gi|257053751|ref|YP_003131584.1|	-	0.039	13.5	3.5	3.5	7.3	0.1	2.4	2	0	0	2	2	2	0	Zinc	finger	found	in	FPG	and	IleRS
Nudix_N_2	PF14803.1	gi|257053751|ref|YP_003131584.1|	-	0.042	13.5	2.1	3.2	7.5	0.3	2.2	2	0	0	2	2	2	0	Nudix	N-terminal
zf-HYPF	PF07503.7	gi|257053751|ref|YP_003131584.1|	-	0.05	13.0	0.4	0.05	13.0	0.3	1.9	2	0	0	2	2	2	0	HypF	finger
DZR	PF12773.2	gi|257053751|ref|YP_003131584.1|	-	0.068	12.9	3.6	0.27	11.1	2.5	1.8	1	1	0	1	1	1	0	Double	zinc	ribbon
HypA	PF01155.14	gi|257053751|ref|YP_003131584.1|	-	0.12	12.1	0.6	0.14	11.8	0.4	1.2	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
zf-IS66	PF13005.2	gi|257053751|ref|YP_003131584.1|	-	0.15	12.0	2.7	1.6	8.7	0.2	2.1	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
LIM	PF00412.17	gi|257053751|ref|YP_003131584.1|	-	0.18	11.8	3.3	3.3	7.8	2.5	2.0	1	1	1	2	2	2	0	LIM	domain
Cys_rich_KTR	PF14205.1	gi|257053751|ref|YP_003131584.1|	-	0.19	11.2	1.0	13	5.3	0.3	2.2	2	0	0	2	2	2	0	Cysteine-rich	KTR
zf-H2C2_2	PF13465.1	gi|257053751|ref|YP_003131584.1|	-	0.22	11.8	3.7	1.2	9.5	0.1	2.1	2	0	0	2	2	2	0	Zinc-finger	double	domain
Sgf11	PF08209.6	gi|257053751|ref|YP_003131584.1|	-	0.25	10.6	2.4	4.9	6.5	0.5	2.1	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
Zn_Tnp_IS1595	PF12760.2	gi|257053751|ref|YP_003131584.1|	-	0.28	11.0	6.3	0.21	11.4	0.7	2.1	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
zinc-ribbons_6	PF07191.7	gi|257053751|ref|YP_003131584.1|	-	0.4	10.5	2.7	7.5	6.4	2.0	2.0	1	1	1	2	2	2	0	zinc-ribbons
zf-B_box	PF00643.19	gi|257053751|ref|YP_003131584.1|	-	0.61	10.0	5.5	1.8	8.5	0.2	2.1	2	0	0	2	2	2	0	B-box	zinc	finger
zf-trcl	PF13451.1	gi|257053751|ref|YP_003131584.1|	-	0.82	9.3	3.8	3.6	7.3	0.4	2.1	2	0	0	2	2	2	0	Probable	zinc-binding	domain
Arc_trans_TRASH	PF08394.5	gi|257053751|ref|YP_003131584.1|	-	0.94	9.6	3.8	4.6	7.4	0.5	2.2	2	0	0	2	2	2	0	Archaeal	TRASH	domain
PhnA_Zn_Ribbon	PF08274.7	gi|257053751|ref|YP_003131584.1|	-	2.2	8.1	5.4	15	5.4	0.3	2.2	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
Rubredoxin	PF00301.15	gi|257053751|ref|YP_003131584.1|	-	8.8	6.2	8.4	33	4.4	5.8	1.9	1	1	0	1	1	1	0	Rubredoxin
Orn_Arg_deC_N	PF02784.11	gi|257053752|ref|YP_003131585.1|	-	1.7e-39	135.4	0.0	2.3e-39	135.0	0.0	1.1	1	0	0	1	1	1	1	Pyridoxal-dependent	decarboxylase,	pyridoxal	binding	domain
Orn_DAP_Arg_deC	PF00278.17	gi|257053752|ref|YP_003131585.1|	-	1e-18	67.1	0.0	1.5e-18	66.5	0.0	1.3	1	0	0	1	1	1	1	Pyridoxal-dependent	decarboxylase,	C-terminal	sheet	domain
Peptidase_M20	PF01546.23	gi|257053753|ref|YP_003131586.1|	-	4.4e-27	94.8	0.3	5.5e-27	94.4	0.2	1.1	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.9	gi|257053753|ref|YP_003131586.1|	-	2.2e-18	66.0	0.0	4.9e-18	64.9	0.0	1.6	2	0	0	2	2	2	1	Peptidase	dimerisation	domain
Glyco_transf_21	PF13506.1	gi|257053754|ref|YP_003131587.1|	-	4.9e-09	35.7	0.0	8.8e-09	34.8	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Glycos_transf_2	PF00535.21	gi|257053754|ref|YP_003131587.1|	-	1.4e-07	31.3	0.0	2.6e-07	30.5	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|257053754|ref|YP_003131587.1|	-	2.6e-05	24.1	0.0	3.6e-05	23.6	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
PQQ_3	PF13570.1	gi|257053755|ref|YP_003131588.1|	-	6.1e-63	207.5	55.9	5.7e-10	39.1	0.9	8.3	8	0	0	8	8	8	8	PQQ-like	domain
PQQ_2	PF13360.1	gi|257053755|ref|YP_003131588.1|	-	4.4e-58	196.5	49.4	8.2e-23	81.0	5.3	4.1	1	1	4	5	5	5	5	PQQ-like	domain
PQQ	PF01011.16	gi|257053755|ref|YP_003131588.1|	-	1.7e-43	144.0	24.2	5.7e-07	28.7	0.1	9.6	9	0	0	9	9	9	7	PQQ	enzyme	repeat
DUF4394	PF14339.1	gi|257053755|ref|YP_003131588.1|	-	0.0073	15.6	6.2	3.9	6.6	0.0	5.7	1	1	5	7	7	7	1	Domain	of	unknown	function	(DUF4394)
TAT_signal	PF10518.4	gi|257053755|ref|YP_003131588.1|	-	0.021	14.8	2.7	0.021	14.8	1.8	2.6	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
IgG_binding_B	PF01378.12	gi|257053755|ref|YP_003131588.1|	-	0.84	9.4	23.3	2.5	7.9	0.4	6.8	7	1	1	8	8	8	0	B	domain
HGTP_anticodon	PF03129.15	gi|257053756|ref|YP_003131589.1|	-	1.9e-19	69.4	0.2	4.1e-19	68.3	0.1	1.6	1	0	0	1	1	1	1	Anticodon	binding	domain
ProRS-C_1	PF09180.6	gi|257053756|ref|YP_003131589.1|	-	1.1e-17	63.6	1.4	2.9e-17	62.3	1.0	1.8	1	0	0	1	1	1	1	Prolyl-tRNA	synthetase,	C-terminal
tRNA-synt_2b	PF00587.20	gi|257053756|ref|YP_003131589.1|	-	1.6e-17	63.6	0.1	3.1e-17	62.6	0.1	1.4	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
AstE_AspA	PF04952.9	gi|257053757|ref|YP_003131590.1|	-	4.2e-14	52.1	0.1	5.4e-14	51.7	0.1	1.1	1	0	0	1	1	1	1	Succinylglutamate	desuccinylase	/	Aspartoacylase	family
Beta-Casp	PF10996.3	gi|257053759|ref|YP_003131592.1|	-	5.1e-32	110.4	0.0	1e-31	109.5	0.0	1.5	1	0	0	1	1	1	1	Beta-Casp	domain
Lactamase_B	PF00753.22	gi|257053759|ref|YP_003131592.1|	-	6.3e-22	78.1	2.4	1.2e-21	77.2	1.6	1.4	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
RMMBL	PF07521.7	gi|257053759|ref|YP_003131592.1|	-	9.8e-14	50.9	0.0	2.6e-13	49.5	0.0	1.8	1	0	0	1	1	1	1	RNA-metabolising	metallo-beta-lactamase
Lactamase_B_2	PF12706.2	gi|257053759|ref|YP_003131592.1|	-	1e-10	41.4	0.3	2.8e-10	40.0	0.1	1.8	2	0	0	2	2	2	1	Beta-lactamase	superfamily	domain
KH_2	PF07650.12	gi|257053759|ref|YP_003131592.1|	-	9.1e-08	31.5	0.0	1.6e-06	27.5	0.0	2.4	2	0	0	2	2	2	1	KH	domain
KH_1	PF00013.24	gi|257053759|ref|YP_003131592.1|	-	0.00012	21.6	0.1	0.0003	20.3	0.1	1.7	1	0	0	1	1	1	1	KH	domain
Lactamase_B_3	PF13483.1	gi|257053759|ref|YP_003131592.1|	-	0.0002	21.1	0.0	0.00048	19.8	0.0	1.5	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
KH_4	PF13083.1	gi|257053759|ref|YP_003131592.1|	-	0.002	17.7	0.0	0.0052	16.3	0.0	1.7	1	0	0	1	1	1	1	KH	domain
KH_3	PF13014.1	gi|257053759|ref|YP_003131592.1|	-	0.06	13.0	0.2	0.15	11.7	0.1	1.7	1	0	0	1	1	1	0	KH	domain
Glyco_hydro_43	PF04616.9	gi|257053760|ref|YP_003131593.1|	-	3.2e-81	272.5	0.1	4e-81	272.2	0.1	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	43
Glyco_hyd_65N_2	PF14498.1	gi|257053761|ref|YP_003131594.1|	-	1.9e-67	227.4	0.0	3.2e-67	226.6	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	65,	N-terminal	domain
Glyco_hydro_65N	PF03636.10	gi|257053761|ref|YP_003131594.1|	-	0.017	14.4	0.0	0.028	13.7	0.0	1.2	1	0	0	1	1	1	0	Glycosyl	hydrolase	family	65,	N-terminal	domain
Aldo_ket_red	PF00248.16	gi|257053762|ref|YP_003131595.1|	-	8.2e-75	251.2	0.0	9.3e-75	251.0	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
MF_alpha_N	PF05436.6	gi|257053762|ref|YP_003131595.1|	-	0.025	14.2	0.0	0.057	13.1	0.0	1.5	1	0	0	1	1	1	0	Mating	factor	alpha	precursor	N-terminus
HhH-GPD	PF00730.20	gi|257053763|ref|YP_003131596.1|	-	5.4e-20	71.6	0.0	7.9e-20	71.1	0.0	1.3	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH	PF00633.18	gi|257053763|ref|YP_003131596.1|	-	0.0036	16.9	0.0	0.0086	15.7	0.0	1.7	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
EndIII_4Fe-2S	PF10576.4	gi|257053763|ref|YP_003131596.1|	-	0.0051	16.9	5.1	0.011	15.9	3.6	1.6	1	0	0	1	1	1	1	Iron-sulfur	binding	domain	of	endonuclease	III
HHH_5	PF14520.1	gi|257053763|ref|YP_003131596.1|	-	0.49	10.5	2.3	6.5	7.0	1.6	2.4	1	1	0	1	1	1	0	Helix-hairpin-helix	domain
DUF371	PF04027.8	gi|257053764|ref|YP_003131597.1|	-	9.5e-53	177.3	0.4	1.1e-52	177.2	0.3	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF371)
DUF373	PF04123.8	gi|257053765|ref|YP_003131598.1|	-	2.7e-94	316.0	8.4	3.2e-94	315.7	5.8	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF373)
Tetraspannin	PF00335.15	gi|257053765|ref|YP_003131598.1|	-	0.54	9.4	10.9	0.034	13.4	2.9	2.0	2	0	0	2	2	2	0	Tetraspanin	family
Laminin_II	PF06009.7	gi|257053766|ref|YP_003131599.1|	-	0.13	12.0	32.4	0.077	12.7	9.2	3.3	1	1	3	4	4	4	0	Laminin	Domain	II
Reo_sigmaC	PF04582.7	gi|257053766|ref|YP_003131599.1|	-	2	7.4	6.7	1.3	8.1	1.7	2.0	1	1	1	2	2	2	0	Reovirus	sigma	C	capsid	protein
DUF948	PF06103.6	gi|257053766|ref|YP_003131599.1|	-	3.5	7.5	21.2	0.22	11.4	2.1	3.9	1	1	3	4	4	4	0	Bacterial	protein	of	unknown	function	(DUF948)
YqjK	PF13997.1	gi|257053766|ref|YP_003131599.1|	-	7.7	6.7	7.2	1.2	9.3	0.4	3.0	2	2	1	3	3	3	0	YqjK-like	protein
AAA_13	PF13166.1	gi|257053766|ref|YP_003131599.1|	-	8.7	4.6	50.8	0.28	9.6	18.5	2.1	1	1	1	2	2	2	0	AAA	domain
Glyco_hydro_2	PF00703.16	gi|257053768|ref|YP_003131601.1|	-	4.4e-08	33.5	0.0	9.9e-08	32.4	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	2
Glyco_hydro_2_N	PF02837.13	gi|257053768|ref|YP_003131601.1|	-	7.6e-08	32.0	0.0	1.5e-07	31.1	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	2,	sugar	binding	domain
BetaGal_dom4_5	PF13364.1	gi|257053768|ref|YP_003131601.1|	-	0.021	15.1	0.0	0.043	14.0	0.0	1.5	1	0	0	1	1	1	0	Beta-galactosidase	jelly	roll	domain
Peptidase_S29	PF02907.10	gi|257053769|ref|YP_003131602.1|	-	0.027	14.0	0.1	0.027	14.0	0.1	1.1	1	0	0	1	1	1	0	Hepatitis	C	virus	NS3	protease
ATP_bind_4	PF01902.12	gi|257053770|ref|YP_003131603.1|	-	2.6e-55	187.1	0.0	5e-55	186.2	0.0	1.4	1	1	0	1	1	1	1	ATP-binding	region
NTP_transferase	PF00483.18	gi|257053771|ref|YP_003131604.1|	-	9.1e-38	129.9	0.0	1.3e-37	129.4	0.0	1.2	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.2	gi|257053771|ref|YP_003131604.1|	-	2.6e-12	47.0	0.0	2.9e-12	46.9	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Hexapep	PF00132.19	gi|257053771|ref|YP_003131604.1|	-	0.03	13.8	3.3	0.7	9.4	0.1	3.7	3	1	0	3	3	3	0	Bacterial	transferase	hexapeptide	(six	repeats)
HTH_10	PF04967.7	gi|257053772|ref|YP_003131605.1|	-	9.8e-21	73.0	0.1	1.5e-20	72.4	0.0	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Homeobox	PF00046.24	gi|257053772|ref|YP_003131605.1|	-	0.11	12.1	0.0	0.21	11.2	0.0	1.4	1	0	0	1	1	1	0	Homeobox	domain
Ste50p-SAM	PF09235.5	gi|257053772|ref|YP_003131605.1|	-	0.13	12.3	0.3	9.6	6.3	0.0	2.8	3	0	0	3	3	3	0	Ste50p,	sterile	alpha	motif
PALP	PF00291.20	gi|257053773|ref|YP_003131606.1|	-	1.1e-51	175.8	1.3	1.3e-51	175.7	0.9	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
DUF1508	PF07411.7	gi|257053774|ref|YP_003131607.1|	-	1.5e-79	261.2	2.0	9.4e-20	69.7	0.0	5.2	5	0	0	5	5	5	5	Domain	of	unknown	function	(DUF1508)
DIPSY	PF11763.3	gi|257053774|ref|YP_003131607.1|	-	0.00066	19.4	0.0	0.61	9.8	0.0	4.1	4	1	1	5	5	5	1	Cell-wall	adhesin	ligand-binding	C-terminal
ATG16	PF08614.6	gi|257053774|ref|YP_003131607.1|	-	0.0084	15.9	0.1	0.018	14.8	0.1	1.4	1	0	0	1	1	1	1	Autophagy	protein	16	(ATG16)
DUF2914	PF11141.3	gi|257053774|ref|YP_003131607.1|	-	0.023	14.2	0.2	11	5.6	0.0	3.4	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2914)
IncA	PF04156.9	gi|257053774|ref|YP_003131607.1|	-	0.12	12.0	15.0	0.042	13.4	3.8	2.4	1	1	1	2	2	1	0	IncA	protein
Fez1	PF06818.10	gi|257053774|ref|YP_003131607.1|	-	0.54	10.2	3.5	2.3	8.2	1.3	2.2	2	0	0	2	2	2	0	Fez1
Cast	PF10174.4	gi|257053774|ref|YP_003131607.1|	-	0.62	8.0	4.2	1.1	7.1	2.9	1.3	1	0	0	1	1	1	0	RIM-binding	protein	of	the	cytomatrix	active	zone
Snf7	PF03357.16	gi|257053774|ref|YP_003131607.1|	-	0.81	9.0	2.5	1.5	8.1	1.8	1.4	1	0	0	1	1	1	0	Snf7
HlyIII	PF03006.15	gi|257053774|ref|YP_003131607.1|	-	0.99	8.7	7.5	1.7	7.9	4.2	1.8	1	1	1	2	2	2	0	Haemolysin-III	related
OPT	PF03169.10	gi|257053774|ref|YP_003131607.1|	-	1.1	7.5	9.9	0.17	10.2	0.1	2.0	2	0	0	2	2	2	0	OPT	oligopeptide	transporter	protein
7TMR-DISM_7TM	PF07695.6	gi|257053774|ref|YP_003131607.1|	-	1.3	8.6	10.6	1.9	8.0	7.3	1.1	1	0	0	1	1	1	0	7TM	diverse	intracellular	signalling
DCD	PF06559.6	gi|257053775|ref|YP_003131608.1|	-	1.6e-15	56.3	0.1	3.3e-13	48.7	0.0	2.1	1	1	0	1	1	1	1	2'-deoxycytidine	5'-triphosphate	deaminase	(DCD)
dUTPase	PF00692.14	gi|257053775|ref|YP_003131608.1|	-	9e-14	51.0	0.0	1.4e-13	50.4	0.0	1.3	1	0	0	1	1	1	1	dUTPase
Aldolase_2	PF10120.4	gi|257053776|ref|YP_003131609.1|	-	1.6e-45	154.5	0.0	2.5e-45	153.9	0.0	1.3	1	0	0	1	1	1	1	Putative	aldolase
HTH_3	PF01381.17	gi|257053776|ref|YP_003131609.1|	-	1.2e-06	28.2	0.1	2.5e-06	27.2	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix
HTH_31	PF13560.1	gi|257053776|ref|YP_003131609.1|	-	1.7e-05	24.9	2.3	8.8e-05	22.6	1.4	2.4	2	1	0	2	2	2	1	Helix-turn-helix	domain
HTH_37	PF13744.1	gi|257053776|ref|YP_003131609.1|	-	0.00012	21.8	0.0	0.00024	20.8	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_19	PF12844.2	gi|257053776|ref|YP_003131609.1|	-	0.00061	19.7	0.0	0.0011	18.9	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_26	PF13443.1	gi|257053776|ref|YP_003131609.1|	-	0.00072	19.7	0.0	0.0014	18.8	0.0	1.4	1	0	0	1	1	1	1	Cro/C1-type	HTH	DNA-binding	domain
HTH_24	PF13412.1	gi|257053776|ref|YP_003131609.1|	-	0.0015	17.8	0.0	0.0038	16.5	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Sigma70_r4	PF04545.11	gi|257053776|ref|YP_003131609.1|	-	0.0017	17.6	0.0	0.0017	17.6	0.0	2.7	3	0	0	3	3	3	1	Sigma-70,	region	4
HTH_38	PF13936.1	gi|257053776|ref|YP_003131609.1|	-	0.0049	16.4	0.5	0.015	14.7	0.0	2.0	2	0	0	2	2	2	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|257053776|ref|YP_003131609.1|	-	0.0054	16.3	0.2	0.063	12.9	0.0	2.8	3	0	0	3	3	3	1	MarR	family
HTH_23	PF13384.1	gi|257053776|ref|YP_003131609.1|	-	0.01	15.4	0.3	0.031	13.9	0.0	1.9	2	0	0	2	2	1	0	Homeodomain-like	domain
KorB	PF08535.5	gi|257053776|ref|YP_003131609.1|	-	0.037	14.1	0.1	0.67	10.1	0.0	2.5	1	1	0	1	1	1	0	KorB	domain
DUF2481	PF10654.4	gi|257053776|ref|YP_003131609.1|	-	0.09	12.4	0.0	0.14	11.8	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2481)
Ubie_methyltran	PF01209.13	gi|257053777|ref|YP_003131610.1|	-	5.4e-15	55.1	0.0	6.1e-15	54.9	0.0	1.0	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_31	PF13847.1	gi|257053777|ref|YP_003131610.1|	-	1.1e-14	54.3	0.0	1.3e-14	54.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|257053777|ref|YP_003131610.1|	-	1.3e-14	54.4	0.0	1.9e-14	53.8	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|257053777|ref|YP_003131610.1|	-	8.9e-13	48.2	0.0	2.3e-12	46.9	0.0	1.7	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|257053777|ref|YP_003131610.1|	-	1.4e-12	48.1	0.0	2.2e-12	47.5	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.14	gi|257053777|ref|YP_003131610.1|	-	5.2e-12	45.7	0.0	7.3e-12	45.2	0.0	1.1	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_12	PF08242.7	gi|257053777|ref|YP_003131610.1|	-	1.3e-11	44.7	0.0	2.5e-11	43.9	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|257053777|ref|YP_003131610.1|	-	4.8e-09	36.2	1.0	8.1e-09	35.5	0.3	1.7	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|257053777|ref|YP_003131610.1|	-	1.2e-07	31.9	0.0	1.9e-07	31.3	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_4	PF02390.12	gi|257053777|ref|YP_003131610.1|	-	5e-05	22.4	0.0	6.1e-05	22.1	0.0	1.1	1	0	0	1	1	1	1	Putative	methyltransferase
FtsJ	PF01728.14	gi|257053777|ref|YP_003131610.1|	-	0.00069	19.6	0.0	0.0016	18.4	0.0	1.4	1	1	1	2	2	2	1	FtsJ-like	methyltransferase
MTS	PF05175.9	gi|257053777|ref|YP_003131610.1|	-	0.0011	18.3	0.0	0.0019	17.5	0.0	1.3	1	1	0	1	1	1	1	Methyltransferase	small	domain
CMAS	PF02353.15	gi|257053777|ref|YP_003131610.1|	-	0.069	12.2	0.1	0.099	11.7	0.1	1.1	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
RrnaAD	PF00398.15	gi|257053777|ref|YP_003131610.1|	-	0.14	11.1	0.0	0.17	10.8	0.0	1.3	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
Thi4	PF01946.12	gi|257053779|ref|YP_003131612.1|	-	7.2e-64	215.0	0.5	1.2e-60	204.4	0.4	2.1	1	1	0	1	1	1	1	Thi4	family
FAD_oxidored	PF12831.2	gi|257053779|ref|YP_003131612.1|	-	2.2e-10	40.2	0.2	3.2e-10	39.6	0.1	1.2	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.14	gi|257053779|ref|YP_003131612.1|	-	4.1e-10	39.2	0.0	7.1e-10	38.4	0.0	1.3	1	0	0	1	1	1	1	FAD	binding	domain
DAO	PF01266.19	gi|257053779|ref|YP_003131612.1|	-	7.8e-10	38.1	0.5	7.4e-07	28.3	0.0	2.2	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.19	gi|257053779|ref|YP_003131612.1|	-	2e-09	36.8	1.8	8.9e-08	31.3	0.1	2.4	1	1	1	3	3	3	1	FAD	binding	domain
HI0933_like	PF03486.9	gi|257053779|ref|YP_003131612.1|	-	8.2e-09	34.4	0.1	1.1e-08	33.9	0.1	1.2	1	0	0	1	1	1	1	HI0933-like	protein
NAD_binding_8	PF13450.1	gi|257053779|ref|YP_003131612.1|	-	1.1e-07	31.7	0.1	2.6e-07	30.5	0.0	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_2	PF07992.9	gi|257053779|ref|YP_003131612.1|	-	2.1e-06	27.7	0.0	3.6e-06	26.9	0.0	1.5	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|257053779|ref|YP_003131612.1|	-	4.2e-05	23.6	0.1	7.3e-05	22.9	0.1	1.4	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|257053779|ref|YP_003131612.1|	-	8.7e-05	22.8	0.5	0.00022	21.5	0.1	1.9	2	0	0	2	2	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Trp_halogenase	PF04820.9	gi|257053779|ref|YP_003131612.1|	-	0.00017	20.3	0.0	0.021	13.4	0.0	2.2	2	0	0	2	2	2	1	Tryptophan	halogenase
NAD_binding_9	PF13454.1	gi|257053779|ref|YP_003131612.1|	-	0.00038	20.2	0.1	0.00098	18.9	0.1	1.7	1	0	0	1	1	1	1	FAD-NAD(P)-binding
Lycopene_cycl	PF05834.7	gi|257053779|ref|YP_003131612.1|	-	0.0005	19.1	0.1	0.016	14.1	0.0	2.1	2	0	0	2	2	2	1	Lycopene	cyclase	protein
GIDA	PF01134.17	gi|257053779|ref|YP_003131612.1|	-	0.00098	18.0	0.1	0.0017	17.3	0.1	1.3	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
Amino_oxidase	PF01593.19	gi|257053779|ref|YP_003131612.1|	-	0.0043	16.1	0.0	0.0061	15.6	0.0	1.2	1	0	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
NAD_binding_7	PF13241.1	gi|257053779|ref|YP_003131612.1|	-	0.0044	17.2	0.0	0.0076	16.4	0.0	1.5	1	1	0	1	1	1	1	Putative	NAD(P)-binding
Shikimate_DH	PF01488.15	gi|257053779|ref|YP_003131612.1|	-	0.036	14.1	0.0	0.079	13.0	0.0	1.6	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
TrkA_N	PF02254.13	gi|257053779|ref|YP_003131612.1|	-	0.12	12.3	0.1	0.23	11.4	0.0	1.5	1	0	0	1	1	1	0	TrkA-N	domain
UPF0126	PF03458.8	gi|257053780|ref|YP_003131613.1|	-	3.2e-34	116.3	29.0	3.4e-18	65.0	6.1	2.5	3	0	0	3	3	3	2	UPF0126	domain
CheC	PF04509.7	gi|257053781|ref|YP_003131614.1|	-	2.6e-13	49.4	0.1	5.8e-13	48.3	0.1	1.6	1	0	0	1	1	1	1	CheC-like	family
CheX	PF13690.1	gi|257053781|ref|YP_003131614.1|	-	0.00023	20.9	0.0	0.00042	20.1	0.0	1.4	1	0	0	1	1	1	1	Chemotaxis	phosphatase	CheX
FliM	PF02154.10	gi|257053781|ref|YP_003131614.1|	-	0.032	13.9	0.0	0.047	13.3	0.0	1.2	1	0	0	1	1	1	0	Flagellar	motor	switch	protein	FliM
DUF137	PF02006.11	gi|257053782|ref|YP_003131615.1|	-	2e-73	245.5	0.9	2.5e-73	245.2	0.6	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF137
GHMP_kinases_N	PF00288.21	gi|257053783|ref|YP_003131616.1|	-	8.3e-11	41.8	2.2	1.6e-10	40.8	1.6	1.5	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
UPF0175	PF03683.8	gi|257053784|ref|YP_003131617.1|	-	1.4e-12	46.9	1.0	2e-12	46.4	0.7	1.3	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0175)
RHH_1	PF01402.16	gi|257053784|ref|YP_003131617.1|	-	0.005	16.6	0.8	0.016	15.0	0.2	2.2	2	1	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
PgaD	PF13994.1	gi|257053784|ref|YP_003131617.1|	-	0.11	11.9	0.2	0.16	11.4	0.2	1.1	1	0	0	1	1	1	0	PgaD-like	protein
ZapA	PF05164.8	gi|257053784|ref|YP_003131617.1|	-	0.28	11.1	1.4	2.9	7.9	1.0	2.0	1	1	0	1	1	1	0	Cell	division	protein	ZapA
Abhydrolase_8	PF06259.7	gi|257053786|ref|YP_003131619.1|	-	3.2e-05	23.5	2.6	0.0002	20.8	1.8	2.0	1	1	0	1	1	1	1	Alpha/beta	hydrolase
Abhydrolase_5	PF12695.2	gi|257053786|ref|YP_003131619.1|	-	8.5e-05	22.3	1.2	0.00016	21.4	0.8	1.4	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Lipase_3	PF01764.20	gi|257053786|ref|YP_003131619.1|	-	0.00021	20.9	0.0	0.00032	20.3	0.0	1.4	1	0	0	1	1	1	1	Lipase	(class	3)
Abhydrolase_6	PF12697.2	gi|257053786|ref|YP_003131619.1|	-	0.00099	19.0	3.3	0.0013	18.6	2.3	1.3	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
PGAP1	PF07819.8	gi|257053786|ref|YP_003131619.1|	-	0.0012	18.4	0.0	0.0016	18.0	0.0	1.3	1	0	0	1	1	1	1	PGAP1-like	protein
Cutinase	PF01083.17	gi|257053786|ref|YP_003131619.1|	-	0.011	15.4	0.9	0.019	14.7	0.6	1.4	1	0	0	1	1	1	0	Cutinase
DUF676	PF05057.9	gi|257053786|ref|YP_003131619.1|	-	0.025	13.8	0.0	0.038	13.2	0.0	1.2	1	0	0	1	1	1	0	Putative	serine	esterase	(DUF676)
PUCC	PF03209.10	gi|257053786|ref|YP_003131619.1|	-	0.032	12.9	0.0	0.045	12.4	0.0	1.1	1	0	0	1	1	1	0	PUCC	protein
DUF900	PF05990.7	gi|257053786|ref|YP_003131619.1|	-	0.039	13.2	0.0	0.074	12.3	0.0	1.4	1	0	0	1	1	1	0	Alpha/beta	hydrolase	of	unknown	function	(DUF900)
tRNA-synt_2	PF00152.15	gi|257053788|ref|YP_003131621.1|	-	6e-88	294.8	0.0	7.8e-88	294.4	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(D,	K	and	N)
tRNA_anti-codon	PF01336.20	gi|257053788|ref|YP_003131621.1|	-	1.6e-15	56.6	0.2	2.7e-15	55.9	0.1	1.4	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
tRNA-synt_2d	PF01409.15	gi|257053788|ref|YP_003131621.1|	-	0.004	16.3	0.2	0.053	12.7	0.0	2.4	3	0	0	3	3	3	1	tRNA	synthetases	class	II	core	domain	(F)
HTH_24	PF13412.1	gi|257053789|ref|YP_003131622.1|	-	5.6e-12	44.8	0.1	9.7e-12	44.0	0.1	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.1	gi|257053789|ref|YP_003131622.1|	-	1.9e-11	43.3	0.8	4.2e-11	42.1	0.6	1.7	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
Fe_dep_repress	PF01325.14	gi|257053789|ref|YP_003131622.1|	-	1.1e-06	28.4	0.0	2.8e-06	27.1	0.0	1.6	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_11	PF08279.7	gi|257053789|ref|YP_003131622.1|	-	2.8e-06	26.8	0.0	8.6e-06	25.3	0.0	1.8	1	0	0	1	1	1	1	HTH	domain
MarR_2	PF12802.2	gi|257053789|ref|YP_003131622.1|	-	3.2e-05	23.5	0.0	6.5e-05	22.5	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.2	gi|257053789|ref|YP_003131622.1|	-	4.7e-05	23.1	0.0	9.3e-05	22.1	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_DeoR	PF08220.7	gi|257053789|ref|YP_003131622.1|	-	0.00013	21.4	0.1	0.00023	20.6	0.0	1.4	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|257053789|ref|YP_003131622.1|	-	0.00057	19.4	0.1	0.0016	17.9	0.0	1.7	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_23	PF13384.1	gi|257053789|ref|YP_003131622.1|	-	0.0026	17.3	0.0	0.0066	16.0	0.0	1.7	1	0	0	1	1	1	1	Homeodomain-like	domain
MarR	PF01047.17	gi|257053789|ref|YP_003131622.1|	-	0.0051	16.5	0.0	0.0087	15.7	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_38	PF13936.1	gi|257053789|ref|YP_003131622.1|	-	0.0064	16.0	0.1	0.026	14.0	0.0	2.1	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_28	PF13518.1	gi|257053789|ref|YP_003131622.1|	-	0.011	15.6	0.0	0.023	14.7	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
Rrf2	PF02082.15	gi|257053789|ref|YP_003131622.1|	-	0.013	15.6	0.0	0.031	14.3	0.0	1.6	2	0	0	2	2	2	0	Transcriptional	regulator
HTH_Tnp_ISL3	PF13542.1	gi|257053789|ref|YP_003131622.1|	-	0.014	14.5	0.1	0.028	13.6	0.1	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_5	PF01022.15	gi|257053789|ref|YP_003131622.1|	-	0.014	14.9	0.0	0.023	14.3	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Sigma70_r4_2	PF08281.7	gi|257053789|ref|YP_003131622.1|	-	0.016	14.6	0.1	0.038	13.4	0.1	1.6	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_27	PF13463.1	gi|257053789|ref|YP_003131622.1|	-	0.016	15.5	0.1	0.031	14.5	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_29	PF13551.1	gi|257053789|ref|YP_003131622.1|	-	0.023	14.8	0.0	0.044	13.9	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn	helix
HrcA_DNA-bdg	PF03444.10	gi|257053789|ref|YP_003131622.1|	-	0.03	13.7	0.0	0.06	12.7	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
Sigma70_r4	PF04545.11	gi|257053789|ref|YP_003131622.1|	-	0.037	13.3	0.1	0.12	11.7	0.0	1.9	2	0	0	2	2	2	0	Sigma-70,	region	4
GntR	PF00392.16	gi|257053789|ref|YP_003131622.1|	-	0.045	13.1	0.1	0.14	11.6	0.0	1.8	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
HTH_10	PF04967.7	gi|257053789|ref|YP_003131622.1|	-	0.049	13.2	0.1	0.086	12.4	0.1	1.4	1	0	0	1	1	1	0	HTH	DNA	binding	domain
HTH_1	PF00126.22	gi|257053789|ref|YP_003131622.1|	-	0.054	13.2	0.1	0.097	12.4	0.1	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
Put_DNA-bind_N	PF06971.8	gi|257053789|ref|YP_003131622.1|	-	0.084	12.6	0.0	0.17	11.6	0.0	1.5	1	0	0	1	1	1	0	Putative	DNA-binding	protein	N-terminus
TrkA_N	PF02254.13	gi|257053790|ref|YP_003131623.1|	-	9.2e-08	32.1	1.8	1.6e-07	31.2	1.2	1.4	1	1	0	1	1	1	1	TrkA-N	domain
Hydant_A_N	PF05378.8	gi|257053790|ref|YP_003131623.1|	-	0.0022	17.5	0.2	0.0029	17.1	0.1	1.2	1	1	0	1	1	1	1	Hydantoinase/oxoprolinase	N-terminal	region
AA_permease_2	PF13520.1	gi|257053791|ref|YP_003131624.1|	-	2.3e-45	154.8	45.8	3.1e-45	154.5	31.7	1.1	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.16	gi|257053791|ref|YP_003131624.1|	-	4.7e-42	143.9	45.4	6e-42	143.5	31.5	1.1	1	0	0	1	1	1	1	Amino	acid	permease
Usp	PF00582.21	gi|257053791|ref|YP_003131624.1|	-	1.5e-09	38.1	7.9	1.9e-07	31.3	0.4	2.7	2	0	0	2	2	2	2	Universal	stress	protein	family
Glyoxalase_4	PF13669.1	gi|257053791|ref|YP_003131624.1|	-	0.048	13.6	0.1	0.2	11.7	0.0	2.0	1	1	0	1	1	1	0	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Phage_HK97_TLTM	PF06120.6	gi|257053791|ref|YP_003131624.1|	-	0.91	8.7	2.2	1.6	7.9	0.2	2.2	2	1	0	2	2	2	0	Tail	length	tape	measure	protein
DUF4245	PF14030.1	gi|257053791|ref|YP_003131624.1|	-	3.4	7.3	12.0	0.23	11.1	0.7	3.4	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF4245)
Topoisom_bac	PF01131.15	gi|257053792|ref|YP_003131625.1|	-	1.8e-114	382.7	0.0	2.2e-114	382.4	0.0	1.1	1	0	0	1	1	1	1	DNA	topoisomerase
zf-C4_Topoisom	PF01396.14	gi|257053792|ref|YP_003131625.1|	-	2e-19	68.7	18.8	2.5e-14	52.4	0.9	4.4	5	0	0	5	5	5	2	Topoisomerase	DNA	binding	C4	zinc	finger
Toprim	PF01751.17	gi|257053792|ref|YP_003131625.1|	-	7e-18	64.4	0.0	1.4e-17	63.4	0.0	1.5	1	0	0	1	1	1	1	Toprim	domain
HHH_5	PF14520.1	gi|257053792|ref|YP_003131625.1|	-	8.7e-07	29.0	0.3	8.7e-07	29.0	0.2	3.2	3	0	0	3	3	3	1	Helix-hairpin-helix	domain
Cdd1	PF11731.3	gi|257053792|ref|YP_003131625.1|	-	0.00016	21.5	0.0	0.00052	19.8	0.0	1.8	2	0	0	2	2	2	1	Pathogenicity	locus
HHH	PF00633.18	gi|257053792|ref|YP_003131625.1|	-	0.0036	16.9	0.0	0.011	15.3	0.0	1.9	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
Toprim_4	PF13662.1	gi|257053792|ref|YP_003131625.1|	-	0.0061	16.5	0.1	0.025	14.5	0.0	2.1	1	0	0	1	1	1	1	Toprim	domain
zinc_ribbon_2	PF13240.1	gi|257053792|ref|YP_003131625.1|	-	0.0085	15.5	1.1	1.2	8.6	0.0	2.9	2	1	0	2	2	2	1	zinc-ribbon	domain
DNA_pol_lambd_f	PF10391.4	gi|257053792|ref|YP_003131625.1|	-	0.021	14.3	0.0	0.081	12.4	0.0	2.0	1	0	0	1	1	1	0	Fingers	domain	of	DNA	polymerase	lambda
DZR	PF12773.2	gi|257053792|ref|YP_003131625.1|	-	0.16	11.7	5.7	0.71	9.7	0.9	2.9	3	0	0	3	3	3	0	Double	zinc	ribbon
zf-CSL	PF05207.8	gi|257053792|ref|YP_003131625.1|	-	0.28	10.7	2.0	2.7	7.5	0.5	2.9	2	0	0	2	2	2	0	CSL	zinc	finger
RNHCP	PF12647.2	gi|257053792|ref|YP_003131625.1|	-	1	9.2	4.8	0.33	10.7	1.1	1.8	2	0	0	2	2	2	0	RNHCP	domain
Ogr_Delta	PF04606.7	gi|257053792|ref|YP_003131625.1|	-	2.1	8.0	9.6	1.4	8.6	0.1	3.4	3	0	0	3	3	3	0	Ogr/Delta-like	zinc	finger
GatB_N	PF02934.10	gi|257053795|ref|YP_003131628.1|	-	1.2e-110	368.9	0.0	1.8e-110	368.3	0.0	1.2	1	0	0	1	1	1	1	GatB/GatE	catalytic	domain
GatB_Yqey	PF02637.13	gi|257053795|ref|YP_003131628.1|	-	1.3e-39	135.3	0.0	1.9e-39	134.7	0.0	1.3	1	0	0	1	1	1	1	GatB	domain
MtrG	PF04210.8	gi|257053795|ref|YP_003131628.1|	-	0.028	14.0	1.7	0.096	12.3	0.1	2.6	3	0	0	3	3	3	0	Tetrahydromethanopterin	S-methyltransferase,	subunit	G
EF-hand_7	PF13499.1	gi|257053795|ref|YP_003131628.1|	-	0.069	13.3	0.3	2.4	8.3	0.0	2.8	2	0	0	2	2	2	0	EF-hand	domain	pair
Tropomyosin	PF00261.15	gi|257053796|ref|YP_003131629.1|	-	0.002	17.2	1.7	0.002	17.2	1.2	2.0	2	0	0	2	2	2	1	Tropomyosin
SlyX	PF04102.7	gi|257053796|ref|YP_003131629.1|	-	0.0041	17.4	1.0	0.0041	17.4	0.7	1.8	2	0	0	2	2	2	1	SlyX
Striatin	PF08232.7	gi|257053796|ref|YP_003131629.1|	-	0.051	13.8	1.9	0.063	13.5	1.3	1.1	1	0	0	1	1	1	0	Striatin	family
Phlebovirus_NSM	PF07246.6	gi|257053796|ref|YP_003131629.1|	-	0.099	11.7	0.2	0.099	11.7	0.1	1.4	1	1	0	1	1	1	0	Phlebovirus	nonstructural	protein	NS-M
Reo_sigmaC	PF04582.7	gi|257053796|ref|YP_003131629.1|	-	0.13	11.3	1.5	0.16	11.1	1.0	1.0	1	0	0	1	1	1	0	Reovirus	sigma	C	capsid	protein
FlaC_arch	PF05377.6	gi|257053796|ref|YP_003131629.1|	-	0.26	11.1	5.8	0.17	11.8	0.8	2.3	1	1	1	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
DMPK_coil	PF08826.5	gi|257053796|ref|YP_003131629.1|	-	0.59	10.0	3.8	0.45	10.4	0.2	2.3	1	1	2	3	3	3	0	DMPK	coiled	coil	domain	like
Defensin_propep	PF00879.13	gi|257053796|ref|YP_003131629.1|	-	0.88	9.5	3.3	1.6	8.7	2.3	1.4	1	0	0	1	1	1	0	Defensin	propeptide
Prefoldin_2	PF01920.15	gi|257053796|ref|YP_003131629.1|	-	1.2	8.9	6.4	3.1	7.6	4.4	1.7	1	1	0	1	1	1	0	Prefoldin	subunit
Spc24	PF08286.6	gi|257053796|ref|YP_003131629.1|	-	1.2	8.8	8.0	5.7	6.6	5.5	1.9	1	1	0	1	1	1	0	Spc24	subunit	of	Ndc80
Tropomyosin_1	PF12718.2	gi|257053796|ref|YP_003131629.1|	-	1.7	8.4	11.4	7.2	6.4	7.9	1.8	1	1	0	1	1	1	0	Tropomyosin	like
TBPIP	PF07106.8	gi|257053796|ref|YP_003131629.1|	-	1.8	8.1	4.4	2.1	7.8	3.1	1.1	1	0	0	1	1	1	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
IncA	PF04156.9	gi|257053796|ref|YP_003131629.1|	-	2.3	7.7	5.3	0.64	9.5	0.4	1.8	1	1	0	1	1	1	0	IncA	protein
TMF_DNA_bd	PF12329.3	gi|257053796|ref|YP_003131629.1|	-	3	7.7	7.7	0.19	11.5	0.8	2.1	2	1	0	2	2	2	0	TATA	element	modulatory	factor	1	DNA	binding
SMC_N	PF02463.14	gi|257053797|ref|YP_003131630.1|	-	1e-55	188.3	37.2	4.1e-31	107.9	0.0	2.6	2	1	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
SMC_hinge	PF06470.8	gi|257053797|ref|YP_003131630.1|	-	2.4e-30	104.9	0.0	7.7e-30	103.3	0.0	2.0	1	0	0	1	1	1	1	SMC	proteins	Flexible	Hinge	Domain
AAA_13	PF13166.1	gi|257053797|ref|YP_003131630.1|	-	2.1e-13	49.6	101.7	8.2e-07	27.8	17.5	5.8	3	2	3	6	6	6	5	AAA	domain
AAA_21	PF13304.1	gi|257053797|ref|YP_003131630.1|	-	1.2e-11	45.1	0.1	1.6e-06	28.3	0.0	4.3	4	2	1	5	5	5	2	AAA	domain
Reo_sigmaC	PF04582.7	gi|257053797|ref|YP_003131630.1|	-	4.6e-11	42.4	25.9	0.00012	21.3	0.2	5.9	2	2	5	8	8	8	5	Reovirus	sigma	C	capsid	protein
AAA_23	PF13476.1	gi|257053797|ref|YP_003131630.1|	-	1.1e-09	38.8	36.6	1.1e-09	38.8	25.3	8.0	2	2	2	4	4	2	1	AAA	domain
IncA	PF04156.9	gi|257053797|ref|YP_003131630.1|	-	1.8e-08	34.2	156.6	0.05	13.2	14.7	8.3	2	2	6	8	8	8	6	IncA	protein
AAA_29	PF13555.1	gi|257053797|ref|YP_003131630.1|	-	1.1e-06	28.1	0.0	3.2e-06	26.5	0.0	1.8	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
ATG16	PF08614.6	gi|257053797|ref|YP_003131630.1|	-	4.4e-06	26.6	132.5	0.0052	16.6	11.1	9.2	2	2	6	9	9	9	5	Autophagy	protein	16	(ATG16)
Myosin_tail_1	PF01576.14	gi|257053797|ref|YP_003131630.1|	-	2.7e-05	22.1	83.6	2.7e-05	22.1	58.0	3.1	2	1	0	2	2	2	1	Myosin	tail
Fib_alpha	PF08702.5	gi|257053797|ref|YP_003131630.1|	-	3e-05	24.1	58.6	0.0007	19.7	4.6	7.2	2	2	5	7	7	7	2	Fibrinogen	alpha/beta	chain	family
CENP-F_leu_zip	PF10473.4	gi|257053797|ref|YP_003131630.1|	-	0.00046	20.0	152.1	0.0027	17.5	16.3	7.9	3	2	5	8	8	8	4	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Mnd1	PF03962.10	gi|257053797|ref|YP_003131630.1|	-	0.0013	18.4	123.2	0.013	15.1	5.7	9.3	2	2	7	9	9	9	5	Mnd1	family
TMF_DNA_bd	PF12329.3	gi|257053797|ref|YP_003131630.1|	-	0.0022	17.7	10.2	0.0022	17.7	7.0	11.7	3	2	5	12	12	12	4	TATA	element	modulatory	factor	1	DNA	binding
EzrA	PF06160.7	gi|257053797|ref|YP_003131630.1|	-	0.0024	16.1	18.3	0.0024	16.1	12.7	6.2	2	2	3	6	6	5	4	Septation	ring	formation	regulator,	EzrA
TBPIP	PF07106.8	gi|257053797|ref|YP_003131630.1|	-	0.0034	16.9	108.3	0.12	11.9	6.3	8.7	2	2	6	9	9	9	5	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
Filament	PF00038.16	gi|257053797|ref|YP_003131630.1|	-	0.0051	16.3	9.0	0.0051	16.3	6.3	7.0	2	2	5	7	7	6	5	Intermediate	filament	protein
DUF3584	PF12128.3	gi|257053797|ref|YP_003131630.1|	-	0.0061	13.9	135.8	0.0053	14.1	37.5	4.4	2	2	2	4	4	4	2	Protein	of	unknown	function	(DUF3584)
AAA_15	PF13175.1	gi|257053797|ref|YP_003131630.1|	-	0.0099	14.9	18.3	0.048	12.7	7.2	3.8	3	1	0	3	3	3	1	AAA	ATPase	domain
APG6	PF04111.7	gi|257053797|ref|YP_003131630.1|	-	0.01	14.8	144.5	0.13	11.2	14.5	7.6	2	2	5	7	7	7	0	Autophagy	protein	Apg6
Spc7	PF08317.6	gi|257053797|ref|YP_003131630.1|	-	0.016	13.8	122.2	0.1	11.2	13.4	7.4	2	2	5	7	7	7	0	Spc7	kinetochore	protein
Laminin_II	PF06009.7	gi|257053797|ref|YP_003131630.1|	-	0.025	14.3	67.8	0.015	15.0	2.6	7.8	2	2	4	8	8	8	0	Laminin	Domain	II
MscS_porin	PF12795.2	gi|257053797|ref|YP_003131630.1|	-	0.11	11.8	118.2	0.097	11.9	18.9	5.9	3	2	3	6	6	5	0	Mechanosensitive	ion	channel	porin	domain
Atg14	PF10186.4	gi|257053797|ref|YP_003131630.1|	-	0.11	11.4	95.8	0.021	13.8	10.9	6.0	2	2	4	6	6	6	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
Baculo_PEP_C	PF04513.7	gi|257053797|ref|YP_003131630.1|	-	0.2	11.5	36.5	0.22	11.3	0.1	7.5	4	2	2	6	6	6	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
NPV_P10	PF05531.7	gi|257053797|ref|YP_003131630.1|	-	0.82	9.9	48.4	3.4	7.9	1.4	9.2	3	2	4	7	7	7	0	Nucleopolyhedrovirus	P10	protein
TPR_MLP1_2	PF07926.7	gi|257053797|ref|YP_003131630.1|	-	1.1	9.0	125.8	0.055	13.2	13.2	7.4	3	2	3	6	6	6	0	TPR/MLP1/MLP2-like	protein
GAS	PF13851.1	gi|257053797|ref|YP_003131630.1|	-	1.5	7.9	118.0	0.13	11.3	4.9	7.9	2	2	6	8	8	7	0	Growth-arrest	specific	micro-tubule	binding
DUF869	PF05911.6	gi|257053797|ref|YP_003131630.1|	-	9.2	4.3	119.1	6.1	4.9	11.4	6.6	2	2	3	6	6	6	0	Plant	protein	of	unknown	function	(DUF869)
ScpA_ScpB	PF02616.9	gi|257053798|ref|YP_003131631.1|	-	2e-25	89.8	0.0	3.6e-25	88.9	0.0	1.4	1	0	0	1	1	1	1	ScpA/B	protein
Mem_trans	PF03547.13	gi|257053800|ref|YP_003131633.1|	-	2.6e-26	91.8	17.2	1e-14	53.6	2.7	2.0	1	1	1	2	2	2	2	Membrane	transport	protein
Pribosyltran	PF00156.22	gi|257053801|ref|YP_003131634.1|	-	5.2e-19	68.1	0.0	8.4e-19	67.5	0.0	1.3	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
DUF3984	PF13136.1	gi|257053801|ref|YP_003131634.1|	-	0.0053	16.0	0.1	0.0072	15.5	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3984)
UPRTase	PF14681.1	gi|257053801|ref|YP_003131634.1|	-	0.044	12.9	0.0	0.062	12.5	0.0	1.2	1	0	0	1	1	1	0	Uracil	phosphoribosyltransferase
Abhydrolase_5	PF12695.2	gi|257053802|ref|YP_003131635.1|	-	1.3e-18	67.1	0.0	8.7e-18	64.4	0.0	2.2	2	1	0	2	2	2	1	Alpha/beta	hydrolase	family
Abhydrolase_6	PF12697.2	gi|257053802|ref|YP_003131635.1|	-	4.4e-14	52.9	2.6	1e-13	51.7	0.2	2.3	2	1	1	3	3	3	1	Alpha/beta	hydrolase	family
DLH	PF01738.13	gi|257053802|ref|YP_003131635.1|	-	3.8e-07	29.6	0.0	0.018	14.3	0.0	2.5	2	0	0	2	2	2	2	Dienelactone	hydrolase	family
Peptidase_S9	PF00326.16	gi|257053802|ref|YP_003131635.1|	-	1e-05	24.8	0.0	0.12	11.5	0.0	2.3	2	0	0	2	2	2	2	Prolyl	oligopeptidase	family
Abhydrolase_3	PF07859.8	gi|257053802|ref|YP_003131635.1|	-	0.0071	15.9	0.4	0.02	14.4	0.0	2.0	2	1	0	2	2	2	1	alpha/beta	hydrolase	fold
Abhydrolase_1	PF00561.15	gi|257053802|ref|YP_003131635.1|	-	0.013	15.0	0.1	0.57	9.6	0.0	2.2	1	1	0	1	1	1	0	alpha/beta	hydrolase	fold
Myco_19_kDa	PF05481.7	gi|257053802|ref|YP_003131635.1|	-	0.014	15.1	3.0	0.029	14.1	2.1	1.6	1	0	0	1	1	1	0	Mycobacterium	19	kDa	lipoprotein	antigen
Abhydrolase_2	PF02230.11	gi|257053802|ref|YP_003131635.1|	-	0.03	13.7	0.0	3	7.2	0.0	2.4	2	0	0	2	2	2	0	Phospholipase/Carboxylesterase
AXE1	PF05448.7	gi|257053802|ref|YP_003131635.1|	-	0.099	11.1	0.0	0.43	9.0	0.0	1.9	1	1	0	1	1	1	0	Acetyl	xylan	esterase	(AXE1)
CAF-1_p150	PF11600.3	gi|257053802|ref|YP_003131635.1|	-	7.7	5.8	7.1	11	5.3	4.9	1.1	1	0	0	1	1	1	0	Chromatin	assembly	factor	1	complex	p150	subunit,	N-terminal
PhzC-PhzF	PF02567.11	gi|257053803|ref|YP_003131636.1|	-	2.8e-66	223.6	0.2	3.2e-66	223.4	0.1	1.0	1	0	0	1	1	1	1	Phenazine	biosynthesis-like	protein
DAP_epimerase	PF01678.14	gi|257053803|ref|YP_003131636.1|	-	2.2e-06	27.6	0.2	0.022	14.6	0.0	2.2	2	0	0	2	2	2	2	Diaminopimelate	epimerase
Pro_racemase	PF05544.6	gi|257053803|ref|YP_003131636.1|	-	0.024	13.4	0.0	0.037	12.8	0.0	1.2	1	0	0	1	1	1	0	Proline	racemase
HTH_AsnC-type	PF13404.1	gi|257053803|ref|YP_003131636.1|	-	0.13	11.8	0.1	12	5.5	0.0	2.6	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
Pyridoxal_deC	PF00282.14	gi|257053804|ref|YP_003131637.1|	-	2.7e-25	88.6	0.0	4.4e-25	87.9	0.0	1.3	1	0	0	1	1	1	1	Pyridoxal-dependent	decarboxylase	conserved	domain
Aminotran_5	PF00266.14	gi|257053804|ref|YP_003131637.1|	-	1.8e-11	43.4	0.0	2e-11	43.2	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class-V
Aminotran_1_2	PF00155.16	gi|257053804|ref|YP_003131637.1|	-	8.1e-08	31.5	0.0	1.7e-07	30.5	0.0	1.6	1	1	0	1	1	1	1	Aminotransferase	class	I	and	II
Beta_elim_lyase	PF01212.16	gi|257053804|ref|YP_003131637.1|	-	4.6e-06	25.9	0.1	9.2e-06	24.9	0.1	1.4	1	1	0	1	1	1	1	Beta-eliminating	lyase
SHMT	PF00464.14	gi|257053804|ref|YP_003131637.1|	-	0.00075	17.9	0.0	0.0027	16.1	0.0	1.7	1	1	0	1	1	1	1	Serine	hydroxymethyltransferase
Abhydrolase_5	PF12695.2	gi|257053804|ref|YP_003131637.1|	-	0.0095	15.6	0.9	0.083	12.6	0.0	2.6	1	1	1	2	2	2	1	Alpha/beta	hydrolase	family
DegT_DnrJ_EryC1	PF01041.12	gi|257053804|ref|YP_003131637.1|	-	0.014	14.4	0.8	0.026	13.5	0.5	1.4	1	0	0	1	1	1	0	DegT/DnrJ/EryC1/StrS	aminotransferase	family
SNARE_assoc	PF09335.6	gi|257053805|ref|YP_003131638.1|	-	3.4e-13	49.8	3.5	4e-13	49.6	1.1	1.9	1	1	1	2	2	2	1	SNARE	associated	Golgi	protein
Cation_efflux	PF01545.16	gi|257053806|ref|YP_003131639.1|	-	4.5e-46	157.1	0.3	5.3e-46	156.9	0.2	1.0	1	0	0	1	1	1	1	Cation	efflux	family
PMT_2	PF13231.1	gi|257053806|ref|YP_003131639.1|	-	0.75	9.6	6.6	0.072	12.9	0.9	1.9	2	0	0	2	2	2	0	Dolichyl-phosphate-mannose-protein	mannosyltransferase
DUF161	PF02588.10	gi|257053806|ref|YP_003131639.1|	-	1.2	9.5	5.8	2.6	8.4	0.2	3.1	3	0	0	3	3	3	0	Uncharacterized	BCR,	YitT	family	COG1284
Glyco_trans_2_3	PF13632.1	gi|257053807|ref|YP_003131640.1|	-	3.1e-13	49.8	3.5	3.1e-13	49.8	2.4	2.3	2	1	0	2	2	2	1	Glycosyl	transferase	family	group	2
Glyco_tranf_2_3	PF13641.1	gi|257053807|ref|YP_003131640.1|	-	2.5e-10	40.5	4.7	6.3e-10	39.2	3.3	1.6	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
YjgP_YjgQ	PF03739.9	gi|257053807|ref|YP_003131640.1|	-	0.085	11.5	1.1	0.1	11.2	0.1	1.6	2	0	0	2	2	2	0	Predicted	permease	YjgP/YjgQ	family
DUF4491	PF14898.1	gi|257053807|ref|YP_003131640.1|	-	2	8.5	5.8	0.44	10.7	0.5	2.5	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4491)
DUF4382	PF14321.1	gi|257053808|ref|YP_003131641.1|	-	6.9e-27	94.2	3.8	1.1e-26	93.5	0.1	2.2	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4382)
DUF4480	PF13715.1	gi|257053808|ref|YP_003131641.1|	-	0.00048	20.1	2.3	0.57	10.2	0.0	3.5	2	1	2	4	4	4	2	Domain	of	unknown	function	(DUF4480)
YidC_periplas	PF14849.1	gi|257053808|ref|YP_003131641.1|	-	0.013	15.4	2.5	0.033	14.0	1.7	1.9	1	1	0	1	1	1	0	YidC	periplasmic	domain
DUF2341	PF10102.4	gi|257053808|ref|YP_003131641.1|	-	0.041	14.0	2.0	2.1	8.5	0.0	3.1	4	0	0	4	4	4	0	Domain	of	unknown	function	(DUF2341)
CarboxypepD_reg	PF13620.1	gi|257053808|ref|YP_003131641.1|	-	0.056	13.5	17.2	0.59	10.2	0.2	4.8	2	2	2	5	5	5	0	Carboxypeptidase	regulatory-like	domain
DUF719	PF05334.8	gi|257053808|ref|YP_003131641.1|	-	0.1	12.6	0.9	0.25	11.3	0.6	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF719)
PT-VENN	PF04829.8	gi|257053808|ref|YP_003131641.1|	-	1.3	8.5	7.7	6.1	6.4	2.1	2.7	2	0	0	2	2	2	0	Pre-toxin	domain	with	VENN	motif
NYN	PF01936.13	gi|257053809|ref|YP_003131642.1|	-	7.5e-18	65.2	0.0	8.6e-18	65.0	0.0	1.0	1	0	0	1	1	1	1	NYN	domain
AP_endonuc_2	PF01261.19	gi|257053809|ref|YP_003131642.1|	-	0.016	14.4	0.5	0.039	13.2	0.3	1.5	1	1	0	1	1	1	0	Xylose	isomerase-like	TIM	barrel
TPK_catalytic	PF04263.11	gi|257053809|ref|YP_003131642.1|	-	0.023	14.2	0.0	0.033	13.7	0.0	1.2	1	0	0	1	1	1	0	Thiamin	pyrophosphokinase,	catalytic	domain
RRM_6	PF14259.1	gi|257053809|ref|YP_003131642.1|	-	0.1	12.6	0.0	0.2	11.6	0.0	1.4	1	0	0	1	1	1	0	RNA	recognition	motif	(a.k.a.	RRM,	RBD,	or	RNP	domain)
RRM_1	PF00076.17	gi|257053809|ref|YP_003131642.1|	-	0.14	11.8	0.0	0.36	10.4	0.0	1.7	1	1	0	1	1	1	0	RNA	recognition	motif.	(a.k.a.	RRM,	RBD,	or	RNP	domain)
TatD_DNase	PF01026.16	gi|257053810|ref|YP_003131643.1|	-	1.8e-19	69.9	0.0	9.3e-18	64.3	0.0	2.0	1	1	0	1	1	1	1	TatD	related	DNase
Lactamase_B_3	PF13483.1	gi|257053811|ref|YP_003131644.1|	-	1.5e-22	80.0	0.3	2.9e-22	79.1	0.1	1.5	2	0	0	2	2	2	1	Beta-lactamase	superfamily	domain
Lactamase_B_2	PF12706.2	gi|257053811|ref|YP_003131644.1|	-	1.2e-15	57.5	0.4	1.5e-15	57.2	0.3	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.22	gi|257053811|ref|YP_003131644.1|	-	1.6e-10	41.0	3.3	2.3e-10	40.4	2.2	1.5	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Trypsin_2	PF13365.1	gi|257053812|ref|YP_003131645.1|	-	2.8e-20	72.4	0.7	5.3e-20	71.5	0.5	1.5	1	0	0	1	1	1	1	Trypsin-like	peptidase	domain
Trypsin	PF00089.21	gi|257053812|ref|YP_003131645.1|	-	3.4e-14	52.9	0.2	1.1e-13	51.3	0.1	1.7	1	1	0	1	1	1	1	Trypsin
PDZ_2	PF13180.1	gi|257053812|ref|YP_003131645.1|	-	2.6e-12	46.4	1.2	2.2e-11	43.4	0.1	2.4	2	0	0	2	2	2	1	PDZ	domain
Peptidase_S46	PF10459.4	gi|257053812|ref|YP_003131645.1|	-	0.088	11.2	0.5	0.13	10.6	0.4	1.2	1	0	0	1	1	1	0	Peptidase	S46
Metal_resist	PF13801.1	gi|257053813|ref|YP_003131646.1|	-	0.00019	21.4	6.9	0.00036	20.5	4.2	1.9	1	1	1	2	2	2	1	Heavy-metal	resistance
DUF3150	PF11348.3	gi|257053813|ref|YP_003131646.1|	-	0.052	12.6	0.5	0.069	12.2	0.3	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3150)
DUF572	PF04502.8	gi|257053813|ref|YP_003131646.1|	-	0.58	9.3	4.0	0.79	8.8	2.8	1.3	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF572)
DNA_primase_S	PF01896.14	gi|257053814|ref|YP_003131647.1|	-	2.7e-23	82.3	0.0	4.2e-23	81.7	0.0	1.2	1	0	0	1	1	1	1	Eukaryotic	and	archaeal	DNA	primase	small	subunit
Acetyltransf_7	PF13508.1	gi|257053815|ref|YP_003131648.1|	-	1.3e-11	44.4	0.1	2.1e-11	43.7	0.1	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.19	gi|257053815|ref|YP_003131648.1|	-	9.6e-11	41.5	0.1	1.6e-10	40.8	0.1	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.1	gi|257053815|ref|YP_003131648.1|	-	2.7e-09	37.1	0.1	3.5e-09	36.7	0.1	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|257053815|ref|YP_003131648.1|	-	1.9e-08	33.9	0.0	3.2e-08	33.2	0.0	1.4	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_9	PF13527.1	gi|257053815|ref|YP_003131648.1|	-	1e-05	25.4	0.2	0.00021	21.1	0.1	2.1	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.1	gi|257053815|ref|YP_003131648.1|	-	0.0001	22.2	0.2	0.00022	21.2	0.1	1.5	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.1	gi|257053815|ref|YP_003131648.1|	-	0.0022	17.8	0.4	0.003	17.4	0.3	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_6	PF13480.1	gi|257053815|ref|YP_003131648.1|	-	0.0073	16.2	1.0	0.015	15.2	0.7	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
DUF502	PF04367.8	gi|257053816|ref|YP_003131649.1|	-	6.6e-24	83.7	0.1	6.6e-24	83.7	0.0	1.6	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF502)
MFS_1	PF07690.11	gi|257053816|ref|YP_003131649.1|	-	0.0047	15.6	0.3	0.0062	15.3	0.2	1.1	1	0	0	1	1	1	1	Major	Facilitator	Superfamily
SPC12	PF06645.8	gi|257053816|ref|YP_003131649.1|	-	0.33	10.8	2.5	3.6	7.4	0.1	2.3	2	0	0	2	2	2	0	Microsomal	signal	peptidase	12	kDa	subunit	(SPC12)
Archease	PF01951.11	gi|257053817|ref|YP_003131650.1|	-	5e-28	97.7	0.0	5.6e-28	97.6	0.0	1.0	1	0	0	1	1	1	1	Archease	protein	family	(MTH1598/TM1083)
peroxidase	PF00141.18	gi|257053818|ref|YP_003131651.1|	-	1.6e-92	309.1	0.0	7.7e-53	179.3	0.0	2.2	2	0	0	2	2	2	2	Peroxidase
DUF4578	PF15147.1	gi|257053818|ref|YP_003131651.1|	-	0.064	13.6	0.0	0.11	12.8	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4578)
RtcB	PF01139.12	gi|257053819|ref|YP_003131652.1|	-	3.7e-150	500.5	0.0	4.2e-150	500.4	0.0	1.0	1	0	0	1	1	1	1	tRNA-splicing	ligase	RtcB
VESA1_N	PF12785.2	gi|257053819|ref|YP_003131652.1|	-	0.23	10.3	0.0	0.28	10.0	0.0	1.1	1	0	0	1	1	1	0	Variant	erythrocyte	surface	antigen-1
DUF1628	PF07790.6	gi|257053820|ref|YP_003131653.1|	-	1.2e-07	32.3	0.0	2.2e-07	31.5	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1628)
MS_channel	PF00924.13	gi|257053821|ref|YP_003131654.1|	-	3.3e-35	121.2	0.1	4.5e-35	120.8	0.1	1.2	1	0	0	1	1	1	1	Mechanosensitive	ion	channel
Chromate_transp	PF02417.10	gi|257053821|ref|YP_003131654.1|	-	0.8	9.2	8.6	1.3	8.6	6.0	1.3	1	0	0	1	1	1	0	Chromate	transporter
Usp	PF00582.21	gi|257053822|ref|YP_003131655.1|	-	9.3e-11	42.0	1.1	1.6e-10	41.3	0.7	1.4	1	1	0	1	1	1	1	Universal	stress	protein	family
Dodecin	PF07311.7	gi|257053823|ref|YP_003131656.1|	-	4.4e-22	77.8	0.1	4.7e-22	77.7	0.1	1.0	1	0	0	1	1	1	1	Dodecin
DUF2150	PF09920.4	gi|257053824|ref|YP_003131657.1|	-	4.2e-67	225.4	9.2	4.8e-67	225.2	6.4	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2150)
FluMu_gp41	PF10109.4	gi|257053824|ref|YP_003131657.1|	-	0.52	10.2	2.9	2	8.4	0.1	2.2	2	0	0	2	2	2	0	Mu-like	prophage	FluMu	protein	gp41
PKD	PF00801.15	gi|257053825|ref|YP_003131658.1|	-	4.1e-21	74.5	46.2	1e-13	50.7	4.6	6.0	5	0	0	5	5	5	4	PKD	domain
Y_Y_Y	PF07495.8	gi|257053825|ref|YP_003131658.1|	-	0.013	15.2	2.8	0.3	10.8	0.2	3.9	3	0	0	3	3	3	0	Y_Y_Y	domain
DUF4625	PF15418.1	gi|257053825|ref|YP_003131658.1|	-	0.097	12.7	4.6	0.21	11.6	0.1	3.7	5	1	0	5	5	5	0	Domain	of	unknown	function	(DUF4625)
DUF756	PF05506.7	gi|257053825|ref|YP_003131658.1|	-	0.18	12.2	5.5	26	5.4	0.1	4.7	3	1	1	4	4	4	0	Domain	of	unknown	function	(DUF756)
Cadherin	PF00028.12	gi|257053825|ref|YP_003131658.1|	-	4.6	7.5	11.4	9	6.6	0.1	5.4	5	0	0	5	5	5	0	Cadherin	domain
Lumazine_bd	PF12870.2	gi|257053825|ref|YP_003131658.1|	-	6	6.9	10.4	95	3.0	0.1	5.0	5	1	0	5	5	5	0	Lumazine-binding	domain
DUF1628	PF07790.6	gi|257053826|ref|YP_003131659.1|	-	1.2e-15	57.9	2.0	1.7e-15	57.4	1.4	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1628)
HMG_CoA_synt_N	PF01154.12	gi|257053827|ref|YP_003131660.1|	-	1.6e-27	96.1	0.0	2.3e-27	95.6	0.0	1.3	1	0	0	1	1	1	1	Hydroxymethylglutaryl-coenzyme	A	synthase	N	terminal
HMG_CoA_synt_C	PF08540.5	gi|257053827|ref|YP_003131660.1|	-	1.8e-18	66.9	0.0	3.2e-18	66.1	0.0	1.3	1	0	0	1	1	1	1	Hydroxymethylglutaryl-coenzyme	A	synthase	C	terminal
HTH_31	PF13560.1	gi|257053828|ref|YP_003131661.1|	-	7.8e-07	29.1	1.1	6.9e-06	26.1	0.1	2.4	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_3	PF01381.17	gi|257053828|ref|YP_003131661.1|	-	8.9e-07	28.6	0.0	1.9e-06	27.6	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix
HTH_19	PF12844.2	gi|257053828|ref|YP_003131661.1|	-	6.8e-05	22.8	0.0	0.00012	22.0	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|257053828|ref|YP_003131661.1|	-	0.0073	15.9	0.1	0.023	14.3	0.0	1.9	2	0	0	2	2	2	1	MarR	family
HTH_37	PF13744.1	gi|257053828|ref|YP_003131661.1|	-	0.079	12.7	0.0	0.21	11.4	0.0	1.7	1	1	0	1	1	1	0	Helix-turn-helix	domain
DUF457	PF04307.9	gi|257053829|ref|YP_003131662.1|	-	2.8e-07	29.9	7.2	3.4e-07	29.7	5.0	1.2	1	0	0	1	1	1	1	Predicted	membrane-bound	metal-dependent	hydrolase	(DUF457)
ABC2_membrane_3	PF12698.2	gi|257053830|ref|YP_003131663.1|	-	2.9e-37	128.5	3.0	3.3e-37	128.2	2.1	1.0	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.19	gi|257053830|ref|YP_003131663.1|	-	1.5e-26	92.8	13.1	1.9e-24	85.9	6.2	2.2	2	0	0	2	2	2	2	ABC-2	type	transporter
ABC2_membrane_2	PF12679.2	gi|257053830|ref|YP_003131663.1|	-	6.2e-14	51.5	0.3	1.3e-13	50.4	0.2	1.5	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC_tran	PF00005.22	gi|257053831|ref|YP_003131664.1|	-	3.5e-29	101.8	0.0	6e-29	101.0	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|257053831|ref|YP_003131664.1|	-	9.6e-15	55.3	0.0	4e-09	36.8	0.0	2.2	1	1	1	2	2	2	2	AAA	domain
AAA_29	PF13555.1	gi|257053831|ref|YP_003131664.1|	-	0.00017	21.0	0.0	0.00035	20.0	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.1	gi|257053831|ref|YP_003131664.1|	-	0.00047	20.5	0.0	0.00069	19.9	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|257053831|ref|YP_003131664.1|	-	0.0015	18.5	0.1	0.0039	17.1	0.1	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_15	PF13175.1	gi|257053831|ref|YP_003131664.1|	-	0.0019	17.2	0.0	0.093	11.7	0.0	2.2	1	1	0	2	2	2	1	AAA	ATPase	domain
TraH_2	PF06871.6	gi|257053831|ref|YP_003131664.1|	-	0.0094	15.4	0.0	0.016	14.7	0.0	1.4	1	0	0	1	1	1	1	TraH_2
AAA_22	PF13401.1	gi|257053831|ref|YP_003131664.1|	-	0.0099	16.0	0.1	0.12	12.5	0.0	2.6	1	1	1	2	2	2	1	AAA	domain
AAA_33	PF13671.1	gi|257053831|ref|YP_003131664.1|	-	0.011	15.6	1.0	0.024	14.5	0.7	1.7	1	1	0	1	1	1	0	AAA	domain
SRP54	PF00448.17	gi|257053831|ref|YP_003131664.1|	-	0.017	14.5	0.1	0.035	13.5	0.1	1.5	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_27	PF13514.1	gi|257053831|ref|YP_003131664.1|	-	0.017	12.8	0.0	0.41	8.2	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_28	PF13521.1	gi|257053831|ref|YP_003131664.1|	-	0.026	14.4	2.3	0.14	12.0	0.1	2.6	2	1	0	2	2	2	0	AAA	domain
AAA_10	PF12846.2	gi|257053831|ref|YP_003131664.1|	-	0.026	13.9	0.2	3.2	7.0	0.0	2.8	2	1	1	3	3	3	0	AAA-like	domain
SMC_N	PF02463.14	gi|257053831|ref|YP_003131664.1|	-	0.051	12.8	0.0	0.41	9.8	0.0	2.1	1	1	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
DUF258	PF03193.11	gi|257053831|ref|YP_003131664.1|	-	0.076	12.1	0.0	0.13	11.4	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
Zeta_toxin	PF06414.7	gi|257053831|ref|YP_003131664.1|	-	0.12	11.4	0.0	0.55	9.2	0.0	2.0	2	0	0	2	2	2	0	Zeta	toxin
AAA_13	PF13166.1	gi|257053831|ref|YP_003131664.1|	-	0.22	9.9	0.0	0.31	9.4	0.0	1.1	1	0	0	1	1	1	0	AAA	domain
HrcA_DNA-bdg	PF03444.10	gi|257053832|ref|YP_003131665.1|	-	2.8e-39	132.4	0.1	3.9e-39	131.9	0.1	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
Rrf2	PF02082.15	gi|257053832|ref|YP_003131665.1|	-	3.7e-08	33.3	0.0	7.7e-08	32.3	0.0	1.5	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_11	PF08279.7	gi|257053832|ref|YP_003131665.1|	-	1.8e-07	30.6	0.0	2.8e-07	30.0	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
HTH_38	PF13936.1	gi|257053832|ref|YP_003131665.1|	-	0.002	17.6	0.1	0.0066	15.9	0.0	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
TrmB	PF01978.14	gi|257053832|ref|YP_003131665.1|	-	0.0038	16.9	0.0	0.0061	16.2	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.1	gi|257053832|ref|YP_003131665.1|	-	0.018	14.4	0.2	0.038	13.3	0.1	1.7	1	1	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.2	gi|257053832|ref|YP_003131665.1|	-	0.027	14.2	0.0	0.044	13.5	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
Rio2_N	PF09202.6	gi|257053832|ref|YP_003131665.1|	-	0.086	12.9	0.0	0.13	12.3	0.0	1.3	1	0	0	1	1	1	0	Rio2,	N-terminal
Phage_terminase	PF10668.4	gi|257053832|ref|YP_003131665.1|	-	0.13	12.0	0.0	0.24	11.1	0.0	1.4	1	0	0	1	1	1	0	Phage	terminase	small	subunit
Pyr_redox_2	PF07992.9	gi|257053833|ref|YP_003131666.1|	-	7e-16	58.7	0.5	1.2e-15	57.9	0.4	1.4	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|257053833|ref|YP_003131666.1|	-	4.4e-08	33.4	0.1	2.3e-06	27.9	0.0	2.4	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|257053833|ref|YP_003131666.1|	-	1.5e-05	25.2	1.7	0.25	11.3	0.0	3.5	3	1	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.1	gi|257053833|ref|YP_003131666.1|	-	0.031	14.0	1.0	12	5.6	0.0	3.6	3	1	1	4	4	4	0	FAD-NAD(P)-binding
K_oxygenase	PF13434.1	gi|257053833|ref|YP_003131666.1|	-	0.036	12.9	0.1	3.8	6.3	0.0	2.3	2	0	0	2	2	2	0	L-lysine	6-monooxygenase	(NADPH-requiring)
AlaDh_PNT_C	PF01262.16	gi|257053833|ref|YP_003131666.1|	-	0.47	9.9	6.0	9.3	5.7	0.1	2.7	2	1	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
DUF555	PF04475.7	gi|257053835|ref|YP_003131668.1|	-	1.3e-49	166.3	0.3	1.5e-49	166.1	0.2	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF555)
Dodecin	PF07311.7	gi|257053835|ref|YP_003131668.1|	-	0.077	13.0	0.1	0.19	11.7	0.1	1.6	1	0	0	1	1	1	0	Dodecin
CBS	PF00571.23	gi|257053836|ref|YP_003131669.1|	-	2.7e-20	71.8	2.0	6e-11	41.9	0.0	2.8	2	1	0	2	2	2	2	CBS	domain
HTH_31	PF13560.1	gi|257053836|ref|YP_003131669.1|	-	9.8e-13	48.1	1.8	1.9e-12	47.2	1.2	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_3	PF01381.17	gi|257053836|ref|YP_003131669.1|	-	3.5e-11	42.7	0.1	7.8e-11	41.6	0.0	1.6	2	0	0	2	2	2	1	Helix-turn-helix
HTH_19	PF12844.2	gi|257053836|ref|YP_003131669.1|	-	1.6e-09	37.6	0.0	2.8e-09	36.8	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_25	PF13413.1	gi|257053836|ref|YP_003131669.1|	-	0.00025	20.6	0.1	0.00041	19.9	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_37	PF13744.1	gi|257053836|ref|YP_003131669.1|	-	0.00078	19.2	0.0	0.0016	18.2	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_26	PF13443.1	gi|257053836|ref|YP_003131669.1|	-	0.0033	17.5	0.0	0.0059	16.7	0.0	1.4	1	0	0	1	1	1	1	Cro/C1-type	HTH	DNA-binding	domain
HTH_24	PF13412.1	gi|257053836|ref|YP_003131669.1|	-	0.013	14.9	0.1	0.48	9.8	0.0	2.4	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.2	gi|257053836|ref|YP_003131669.1|	-	0.1	12.3	0.4	1	9.0	0.1	2.3	2	0	0	2	2	2	0	MarR	family
IMS	PF00817.15	gi|257053837|ref|YP_003131670.1|	-	1.9e-40	138.0	0.1	2.9e-40	137.4	0.1	1.3	1	0	0	1	1	1	1	impB/mucB/samB	family
IMS_C	PF11799.3	gi|257053837|ref|YP_003131670.1|	-	6.4e-14	51.9	0.0	1.2e-13	51.0	0.0	1.5	1	0	0	1	1	1	1	impB/mucB/samB	family	C-terminal	domain
HHH_5	PF14520.1	gi|257053837|ref|YP_003131670.1|	-	1.6e-05	24.9	0.4	4.9e-05	23.4	0.0	2.0	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
IMS_HHH	PF11798.3	gi|257053837|ref|YP_003131670.1|	-	5.1e-05	23.0	0.0	0.0001	22.1	0.0	1.5	1	0	0	1	1	1	1	IMS	family	HHH	motif
DNA_pol_lambd_f	PF10391.4	gi|257053837|ref|YP_003131670.1|	-	0.0007	19.0	0.1	0.0021	17.5	0.0	1.8	2	0	0	2	2	2	1	Fingers	domain	of	DNA	polymerase	lambda
Cdd1	PF11731.3	gi|257053837|ref|YP_003131670.1|	-	0.012	15.5	0.0	0.025	14.4	0.0	1.5	1	0	0	1	1	1	0	Pathogenicity	locus
DUF4332	PF14229.1	gi|257053837|ref|YP_003131670.1|	-	0.13	12.2	0.0	0.39	10.6	0.0	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4332)
ADH_zinc_N_2	PF13602.1	gi|257053838|ref|YP_003131671.1|	-	0.074	13.9	0.7	0.33	11.8	0.5	1.9	1	1	0	1	1	1	0	Zinc-binding	dehydrogenase
AAA_10	PF12846.2	gi|257053839|ref|YP_003131672.1|	-	2.8e-17	63.1	4.5	3.9e-10	39.6	0.0	3.0	1	1	1	3	3	3	2	AAA-like	domain
DUF87	PF01935.12	gi|257053839|ref|YP_003131672.1|	-	4.3e-12	46.3	0.2	2e-11	44.1	0.0	2.0	2	0	0	2	2	2	1	Domain	of	unknown	function	DUF87
DUF853	PF05872.7	gi|257053839|ref|YP_003131672.1|	-	3.8e-05	22.2	0.2	0.0037	15.7	0.0	2.7	2	1	1	3	3	3	1	Bacterial	protein	of	unknown	function	(DUF853)
AAA_17	PF13207.1	gi|257053839|ref|YP_003131672.1|	-	8.4e-05	23.3	1.8	0.0024	18.6	0.0	2.7	2	0	0	2	2	2	1	AAA	domain
APS_kinase	PF01583.15	gi|257053839|ref|YP_003131672.1|	-	0.00031	20.4	0.2	0.0099	15.5	0.0	2.4	2	0	0	2	2	2	1	Adenylylsulphate	kinase
NTR2	PF15458.1	gi|257053839|ref|YP_003131672.1|	-	0.0015	17.8	0.1	0.0027	16.9	0.1	1.4	1	0	0	1	1	1	1	Nineteen	complex-related	protein	2
AAA	PF00004.24	gi|257053839|ref|YP_003131672.1|	-	0.0035	17.5	0.1	0.062	13.5	0.0	2.7	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF4515	PF14988.1	gi|257053839|ref|YP_003131672.1|	-	0.0047	16.6	0.5	0.0096	15.6	0.4	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4515)
AAA_22	PF13401.1	gi|257053839|ref|YP_003131672.1|	-	0.0076	16.3	0.3	0.034	14.2	0.0	2.2	2	1	0	2	2	2	1	AAA	domain
IncA	PF04156.9	gi|257053839|ref|YP_003131672.1|	-	0.0077	15.8	1.6	0.014	14.9	1.1	1.4	1	0	0	1	1	1	1	IncA	protein
AAA_18	PF13238.1	gi|257053839|ref|YP_003131672.1|	-	0.01	16.1	0.5	0.067	13.4	0.0	2.4	2	1	0	2	2	2	0	AAA	domain
Atg14	PF10186.4	gi|257053839|ref|YP_003131672.1|	-	0.011	14.7	0.5	0.017	14.0	0.4	1.2	1	0	0	1	1	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
Troponin	PF00992.15	gi|257053839|ref|YP_003131672.1|	-	0.018	15.0	0.6	0.043	13.8	0.4	1.5	1	0	0	1	1	1	0	Troponin
Med4	PF10018.4	gi|257053839|ref|YP_003131672.1|	-	0.02	14.3	0.3	0.11	11.8	0.3	2.0	2	0	0	2	2	2	0	Vitamin-D-receptor	interacting	Mediator	subunit	4
AAA_13	PF13166.1	gi|257053839|ref|YP_003131672.1|	-	0.024	13.1	0.0	0.042	12.3	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
V-SNARE	PF05008.10	gi|257053839|ref|YP_003131672.1|	-	0.025	14.7	1.3	10	6.3	0.8	2.7	2	0	0	2	2	2	0	Vesicle	transport	v-SNARE	protein	N-terminus
Pox_A_type_inc	PF04508.7	gi|257053839|ref|YP_003131672.1|	-	0.044	13.5	4.1	0.28	11.0	2.0	2.7	2	0	0	2	2	2	0	Viral	A-type	inclusion	protein	repeat
Zot	PF05707.7	gi|257053839|ref|YP_003131672.1|	-	0.049	13.1	0.0	0.89	8.9	0.0	2.2	1	1	0	1	1	1	0	Zonular	occludens	toxin	(Zot)
CbiA	PF01656.18	gi|257053839|ref|YP_003131672.1|	-	0.056	12.8	0.0	0.11	11.8	0.0	1.5	1	0	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
GAS	PF13851.1	gi|257053839|ref|YP_003131672.1|	-	0.06	12.5	0.8	0.11	11.6	0.6	1.3	1	0	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
Med9	PF07544.8	gi|257053839|ref|YP_003131672.1|	-	0.063	13.0	1.9	0.15	11.8	1.3	1.6	1	0	0	1	1	1	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
AAA_16	PF13191.1	gi|257053839|ref|YP_003131672.1|	-	0.1	12.5	3.6	0.11	12.4	0.3	2.5	2	1	0	2	2	2	0	AAA	ATPase	domain
HAUS5	PF14817.1	gi|257053839|ref|YP_003131672.1|	-	0.13	10.8	1.0	0.24	9.8	0.7	1.4	1	0	0	1	1	1	0	HAUS	augmin-like	complex	subunit	5
DivIC	PF04977.10	gi|257053839|ref|YP_003131672.1|	-	0.3	10.5	1.6	0.94	9.0	1.1	1.9	1	0	0	1	1	1	0	Septum	formation	initiator
TMF_DNA_bd	PF12329.3	gi|257053839|ref|YP_003131672.1|	-	0.57	10.0	4.4	0.85	9.4	2.2	1.9	2	0	0	2	2	2	0	TATA	element	modulatory	factor	1	DNA	binding
DUF1628	PF07790.6	gi|257053840|ref|YP_003131673.1|	-	2.8e-11	43.9	0.4	4.7e-11	43.2	0.3	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1628)
Pertactin	PF03212.9	gi|257053840|ref|YP_003131673.1|	-	0.097	12.3	0.0	0.14	11.9	0.0	1.2	1	0	0	1	1	1	0	Pertactin
Lipase_GDSL_3	PF14606.1	gi|257053842|ref|YP_003131675.1|	-	1.5e-29	102.9	0.0	2.2e-29	102.4	0.0	1.2	1	0	0	1	1	1	1	GDSL-like	Lipase/Acylhydrolase	family
Lipase_GDSL_2	PF13472.1	gi|257053842|ref|YP_003131675.1|	-	1.6e-14	54.3	4.0	3e-14	53.5	2.8	1.4	1	0	0	1	1	1	1	GDSL-like	Lipase/Acylhydrolase	family
Zn-ribbon_8	PF09723.5	gi|257053843|ref|YP_003131676.1|	-	0.022	14.7	0.6	0.25	11.3	0.0	2.1	2	0	0	2	2	2	0	Zinc	ribbon	domain
A2L_zn_ribbon	PF08792.5	gi|257053843|ref|YP_003131676.1|	-	0.03	13.7	1.1	0.64	9.5	0.0	2.3	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
zf-RING_3	PF14369.1	gi|257053843|ref|YP_003131676.1|	-	0.059	13.3	0.6	0.059	13.3	0.4	1.8	2	1	0	2	2	2	0	zinc-finger
DiS_P_DiS	PF06750.8	gi|257053843|ref|YP_003131676.1|	-	0.084	12.6	0.0	0.084	12.6	0.0	1.1	1	0	0	1	1	1	0	Bacterial	Peptidase	A24	N-terminal	domain
zf-IS66	PF13005.2	gi|257053843|ref|YP_003131676.1|	-	0.088	12.8	0.2	0.088	12.8	0.1	2.0	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
zf-C4_Topoisom	PF01396.14	gi|257053843|ref|YP_003131676.1|	-	0.16	11.5	0.2	0.16	11.5	0.1	1.9	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
zf-ribbon_3	PF13248.1	gi|257053843|ref|YP_003131676.1|	-	0.22	10.7	3.1	0.55	9.5	2.2	1.7	1	1	0	1	1	1	0	zinc-ribbon	domain
IMPDH	PF00478.20	gi|257053845|ref|YP_003131678.1|	-	9.6e-129	429.2	4.9	1.1e-128	429.0	3.4	1.0	1	0	0	1	1	1	1	IMP	dehydrogenase	/	GMP	reductase	domain
CBS	PF00571.23	gi|257053845|ref|YP_003131678.1|	-	2.5e-28	97.5	4.9	3.6e-14	52.2	0.2	2.7	2	0	0	2	2	2	2	CBS	domain
NMO	PF03060.10	gi|257053845|ref|YP_003131678.1|	-	1.8e-13	50.3	0.3	4.8e-06	25.9	0.1	2.3	2	0	0	2	2	2	2	Nitronate	monooxygenase
FMN_dh	PF01070.13	gi|257053845|ref|YP_003131678.1|	-	8e-09	34.7	2.8	2.2e-08	33.3	2.0	1.7	1	1	0	1	1	1	1	FMN-dependent	dehydrogenase
ThiG	PF05690.9	gi|257053845|ref|YP_003131678.1|	-	8.7e-05	21.7	1.3	8.7e-05	21.7	0.9	2.2	2	0	0	2	2	2	1	Thiazole	biosynthesis	protein	ThiG
DHO_dh	PF01180.16	gi|257053845|ref|YP_003131678.1|	-	0.00029	19.9	1.1	0.00058	18.9	0.8	1.6	1	0	0	1	1	1	1	Dihydroorotate	dehydrogenase
Glu_synthase	PF01645.12	gi|257053845|ref|YP_003131678.1|	-	0.0022	16.9	4.5	0.0023	16.9	2.2	1.7	2	0	0	2	2	2	1	Conserved	region	in	glutamate	synthase
His_biosynth	PF00977.16	gi|257053845|ref|YP_003131678.1|	-	0.0025	17.0	3.5	0.0079	15.4	2.4	1.9	1	1	0	1	1	1	1	Histidine	biosynthesis	protein
Dus	PF01207.12	gi|257053845|ref|YP_003131678.1|	-	0.0045	15.8	0.1	0.0095	14.7	0.1	1.5	1	0	0	1	1	1	1	Dihydrouridine	synthase	(Dus)
PcrB	PF01884.12	gi|257053845|ref|YP_003131678.1|	-	0.017	14.3	0.4	0.017	14.3	0.3	2.7	3	0	0	3	3	3	0	PcrB	family
Amino_oxidase	PF01593.19	gi|257053846|ref|YP_003131679.1|	-	5.9e-15	55.2	1.8	4.4e-09	35.9	0.3	2.0	2	0	0	2	2	2	2	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.1	gi|257053846|ref|YP_003131679.1|	-	8.5e-13	48.1	0.3	2.2e-12	46.8	0.2	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.19	gi|257053846|ref|YP_003131679.1|	-	5.5e-11	41.9	0.7	8.7e-06	24.8	0.1	2.2	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.1	gi|257053846|ref|YP_003131679.1|	-	0.00038	20.5	0.2	0.002	18.2	0.1	2.0	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.1	gi|257053846|ref|YP_003131679.1|	-	0.0056	16.4	0.3	0.81	9.4	0.0	2.2	2	0	0	2	2	2	1	FAD-NAD(P)-binding
F420_oxidored	PF03807.12	gi|257053846|ref|YP_003131679.1|	-	0.082	13.3	0.1	4	7.9	0.0	2.4	2	0	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
Pyr_redox_2	PF07992.9	gi|257053846|ref|YP_003131679.1|	-	0.11	12.4	1.8	0.19	11.5	1.3	1.6	1	1	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.13	gi|257053846|ref|YP_003131679.1|	-	0.12	12.0	1.1	0.24	11.0	0.7	1.5	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
GIDA	PF01134.17	gi|257053846|ref|YP_003131679.1|	-	0.19	10.5	2.3	0.27	10.0	1.6	1.2	1	0	0	1	1	1	0	Glucose	inhibited	division	protein	A
DUF2298	PF10060.4	gi|257053847|ref|YP_003131680.1|	-	2.7e-125	418.8	28.9	4.2e-125	418.2	19.7	1.4	2	0	0	2	2	2	1	Uncharacterized	membrane	protein	(DUF2298)
Ribosomal_L44	PF00935.14	gi|257053849|ref|YP_003131682.1|	-	1.4e-23	82.6	2.2	1.7e-23	82.3	1.5	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L44
zf-ribbon_3	PF13248.1	gi|257053849|ref|YP_003131682.1|	-	0.0027	16.8	1.0	1.1	8.5	0.2	2.3	2	0	0	2	2	2	2	zinc-ribbon	domain
DUF2296	PF10058.4	gi|257053849|ref|YP_003131682.1|	-	0.0053	16.4	1.5	0.63	9.8	0.0	2.2	2	0	0	2	2	2	1	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
Tnp_zf-ribbon_2	PF13842.1	gi|257053849|ref|YP_003131682.1|	-	0.015	15.6	1.5	0.56	10.6	0.1	2.3	2	0	0	2	2	2	0	DDE_Tnp_1-like	zinc-ribbon
zf-UBR	PF02207.15	gi|257053849|ref|YP_003131682.1|	-	0.021	14.5	1.7	4.6	7.0	0.2	2.1	2	0	0	2	2	2	0	Putative	zinc	finger	in	N-recognin	(UBR	box)
Zn-ribbon_8	PF09723.5	gi|257053849|ref|YP_003131682.1|	-	0.031	14.2	1.7	2.3	8.2	0.1	2.4	2	0	0	2	2	2	0	Zinc	ribbon	domain
DZR	PF12773.2	gi|257053849|ref|YP_003131682.1|	-	0.031	14.0	3.2	0.28	11.0	2.2	2.0	1	1	0	1	1	1	0	Double	zinc	ribbon
zinc_ribbon_2	PF13240.1	gi|257053849|ref|YP_003131682.1|	-	0.034	13.6	5.9	2.2	7.8	1.4	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Terminase_GpA	PF05876.7	gi|257053849|ref|YP_003131682.1|	-	0.045	12.1	0.2	0.059	11.7	0.2	1.2	1	0	0	1	1	1	0	Phage	terminase	large	subunit	(GpA)
TF_Zn_Ribbon	PF08271.7	gi|257053849|ref|YP_003131682.1|	-	0.1	11.9	2.2	5.1	6.4	0.1	2.2	2	0	0	2	2	2	0	TFIIB	zinc-binding
Zn_Tnp_IS1595	PF12760.2	gi|257053849|ref|YP_003131682.1|	-	0.12	12.2	2.3	8.1	6.3	0.1	2.2	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
zf-ISL3	PF14690.1	gi|257053849|ref|YP_003131682.1|	-	0.22	11.5	4.5	8	6.5	0.0	2.5	2	1	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zinc_ribbon_4	PF13717.1	gi|257053849|ref|YP_003131682.1|	-	0.27	10.9	1.6	10	5.9	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_5	PF13719.1	gi|257053849|ref|YP_003131682.1|	-	0.28	10.8	1.4	10	5.8	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
TFIIS_C	PF01096.13	gi|257053849|ref|YP_003131682.1|	-	0.28	10.8	2.5	5.8	6.6	0.2	2.3	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
Nudix_N_2	PF14803.1	gi|257053849|ref|YP_003131682.1|	-	0.53	10.0	3.2	20	4.9	0.1	2.8	3	0	0	3	3	3	0	Nudix	N-terminal
Ribosomal_L33	PF00471.15	gi|257053849|ref|YP_003131682.1|	-	0.96	9.7	4.1	0.53	10.5	0.5	2.0	2	0	0	2	2	2	0	Ribosomal	protein	L33
zf-HIT	PF04438.11	gi|257053849|ref|YP_003131682.1|	-	1.3	8.7	4.8	10	5.8	0.4	2.2	2	0	0	2	2	2	0	HIT	zinc	finger
zf-B_box	PF00643.19	gi|257053849|ref|YP_003131682.1|	-	2.8	7.9	7.0	18	5.3	1.7	2.2	2	0	0	2	2	2	0	B-box	zinc	finger
Ribosomal_S27e	PF01667.12	gi|257053850|ref|YP_003131683.1|	-	4.5e-21	74.1	0.6	4.8e-21	74.0	0.4	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S27
DUF3797	PF12677.2	gi|257053850|ref|YP_003131683.1|	-	0.00042	19.8	2.3	0.3	10.7	0.2	2.1	1	1	1	2	2	2	2	Domain	of	unknown	function	(DUF3797)
TF_Zn_Ribbon	PF08271.7	gi|257053850|ref|YP_003131683.1|	-	0.0009	18.5	1.6	0.0009	18.5	1.1	1.5	2	0	0	2	2	2	1	TFIIB	zinc-binding
zf-ribbon_3	PF13248.1	gi|257053850|ref|YP_003131683.1|	-	0.00092	18.3	1.4	0.0014	17.7	1.0	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|257053850|ref|YP_003131683.1|	-	0.0043	16.9	0.4	0.0067	16.3	0.3	1.3	1	0	0	1	1	1	1	Zinc	ribbon	domain
A2L_zn_ribbon	PF08792.5	gi|257053850|ref|YP_003131683.1|	-	0.023	14.1	2.0	10	5.7	0.1	1.8	1	1	0	1	1	1	0	A2L	zinc	ribbon	domain
HypA	PF01155.14	gi|257053850|ref|YP_003131683.1|	-	0.046	13.4	0.2	0.055	13.1	0.2	1.2	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
TFIIS_C	PF01096.13	gi|257053850|ref|YP_003131683.1|	-	0.076	12.6	0.9	1.9	8.2	0.1	2.1	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
DNA_ligase_ZBD	PF03119.11	gi|257053850|ref|YP_003131683.1|	-	0.082	12.6	2.3	0.89	9.3	0.0	2.5	2	1	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
Zn_Tnp_IS91	PF14319.1	gi|257053850|ref|YP_003131683.1|	-	0.097	12.1	0.1	0.097	12.1	0.0	1.1	1	0	0	1	1	1	0	Transposase	zinc-binding	domain
zf-NADH-PPase	PF09297.6	gi|257053850|ref|YP_003131683.1|	-	0.11	11.9	1.9	2.2	7.8	0.1	2.2	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
OrfB_Zn_ribbon	PF07282.6	gi|257053850|ref|YP_003131683.1|	-	0.12	12.0	0.1	0.15	11.7	0.1	1.4	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
PADR1	PF08063.7	gi|257053850|ref|YP_003131683.1|	-	0.14	11.5	1.3	0.33	10.3	0.2	1.8	1	1	1	2	2	2	0	PADR1	(NUC008)	domain
Zn_ribbon_recom	PF13408.1	gi|257053850|ref|YP_003131683.1|	-	0.15	12.3	0.9	2.3	8.5	0.1	2.2	2	1	0	2	2	2	0	Recombinase	zinc	beta	ribbon	domain
zf-HIT	PF04438.11	gi|257053850|ref|YP_003131683.1|	-	0.17	11.5	2.0	9.2	6.0	0.1	2.1	2	0	0	2	2	2	0	HIT	zinc	finger
Zn_Tnp_IS1595	PF12760.2	gi|257053850|ref|YP_003131683.1|	-	0.19	11.5	2.3	6	6.7	0.2	2.1	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|257053850|ref|YP_003131683.1|	-	0.24	11.1	2.8	5.8	6.6	0.2	2.3	1	1	1	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_5	PF13719.1	gi|257053850|ref|YP_003131683.1|	-	0.47	10.0	3.7	4.4	6.9	0.2	2.3	1	1	2	3	3	3	0	zinc-ribbon	domain
Prok-RING_1	PF14446.1	gi|257053850|ref|YP_003131683.1|	-	0.57	9.9	3.0	1.2	8.8	2.1	1.6	1	1	0	1	1	1	0	Prokaryotic	RING	finger	family	1
Zn_Tnp_IS1	PF03811.8	gi|257053850|ref|YP_003131683.1|	-	0.92	9.0	6.1	0.23	10.9	0.7	2.0	1	1	1	2	2	2	0	InsA	N-terminal	domain
zf-IS66	PF13005.2	gi|257053850|ref|YP_003131683.1|	-	1.7	8.6	4.3	6.2	6.8	0.2	2.2	1	1	1	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
zf-trcl	PF13451.1	gi|257053850|ref|YP_003131683.1|	-	2	8.1	4.1	6.1	6.5	0.4	2.1	1	1	1	2	2	2	0	Probable	zinc-binding	domain
EIF_2_alpha	PF07541.7	gi|257053851|ref|YP_003131684.1|	-	3.9e-31	107.1	0.0	6.3e-31	106.4	0.0	1.3	1	0	0	1	1	1	1	Eukaryotic	translation	initiation	factor	2	alpha	subunit
S1	PF00575.18	gi|257053851|ref|YP_003131684.1|	-	1.9e-14	53.5	0.8	4.5e-14	52.2	0.6	1.6	1	0	0	1	1	1	1	S1	RNA	binding	domain
DUF1804	PF08822.6	gi|257053851|ref|YP_003131684.1|	-	0.028	14.1	0.4	0.061	13.0	0.2	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1804)
EXOSC1	PF10447.4	gi|257053851|ref|YP_003131684.1|	-	0.071	13.0	0.0	9.6	6.2	0.0	2.3	2	0	0	2	2	2	0	Exosome	component	EXOSC1/CSL4
Nop10p	PF04135.7	gi|257053852|ref|YP_003131685.1|	-	4.3e-24	83.9	0.4	4.7e-24	83.8	0.3	1.0	1	0	0	1	1	1	1	Nucleolar	RNA-binding	protein,	Nop10p	family
PAC2	PF09754.4	gi|257053853|ref|YP_003131686.1|	-	9.7e-53	179.2	0.2	1.1e-52	179.0	0.1	1.0	1	0	0	1	1	1	1	PAC2	family
PALP	PF00291.20	gi|257053854|ref|YP_003131687.1|	-	5e-38	131.0	5.6	6.1e-38	130.7	3.9	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
DZR	PF12773.2	gi|257053854|ref|YP_003131687.1|	-	0.0081	15.9	1.1	0.014	15.1	0.8	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
HypA	PF01155.14	gi|257053854|ref|YP_003131687.1|	-	0.016	14.8	0.3	0.031	13.9	0.2	1.4	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
Prok-RING_1	PF14446.1	gi|257053854|ref|YP_003131687.1|	-	0.14	11.9	2.4	0.22	11.2	1.7	1.3	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
ThiF	PF00899.16	gi|257053854|ref|YP_003131687.1|	-	0.66	9.7	2.6	0.97	9.2	0.1	2.2	2	0	0	2	2	2	0	ThiF	family
Zn-ribbon_8	PF09723.5	gi|257053854|ref|YP_003131687.1|	-	2.8	7.9	4.4	7.1	6.6	3.0	1.6	1	1	0	1	1	1	0	Zinc	ribbon	domain
Amino_oxidase	PF01593.19	gi|257053855|ref|YP_003131688.1|	-	2.8e-32	112.3	2.3	7.9e-32	110.9	1.6	1.7	1	1	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.1	gi|257053855|ref|YP_003131688.1|	-	2.6e-14	52.9	0.4	7.1e-14	51.5	0.3	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.19	gi|257053855|ref|YP_003131688.1|	-	2.2e-12	46.5	4.1	1.1e-05	24.5	0.5	2.2	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.19	gi|257053855|ref|YP_003131688.1|	-	3.7e-07	29.3	3.1	7.4e-07	28.3	0.6	2.0	2	0	0	2	2	2	1	FAD	binding	domain
Thi4	PF01946.12	gi|257053855|ref|YP_003131688.1|	-	7.7e-06	25.1	0.4	1.5e-05	24.2	0.2	1.5	2	0	0	2	2	2	1	Thi4	family
Pyr_redox_2	PF07992.9	gi|257053855|ref|YP_003131688.1|	-	1e-05	25.4	0.3	0.001	19.0	0.1	2.2	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.9	gi|257053855|ref|YP_003131688.1|	-	1.7e-05	23.5	0.4	0.00077	18.0	0.2	2.1	2	0	0	2	2	2	1	HI0933-like	protein
FAD_binding_3	PF01494.14	gi|257053855|ref|YP_003131688.1|	-	0.00063	18.9	2.1	0.00063	18.8	0.3	1.7	2	0	0	2	2	2	1	FAD	binding	domain
NAD_binding_9	PF13454.1	gi|257053855|ref|YP_003131688.1|	-	0.0012	18.6	2.7	0.33	10.7	0.1	3.0	3	0	0	3	3	3	2	FAD-NAD(P)-binding
FAD_oxidored	PF12831.2	gi|257053855|ref|YP_003131688.1|	-	0.0013	17.9	2.5	0.0016	17.6	0.3	1.9	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
Pyr_redox	PF00070.22	gi|257053855|ref|YP_003131688.1|	-	0.0019	18.5	1.1	0.22	11.9	0.4	2.4	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|257053855|ref|YP_003131688.1|	-	0.0027	17.8	0.1	0.13	12.3	0.0	2.2	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.17	gi|257053855|ref|YP_003131688.1|	-	0.0051	15.7	0.4	0.0085	14.9	0.3	1.3	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
Lycopene_cycl	PF05834.7	gi|257053855|ref|YP_003131688.1|	-	0.0085	15.0	0.8	0.016	14.1	0.1	1.8	2	0	0	2	2	2	1	Lycopene	cyclase	protein
NAD_binding_10	PF13460.1	gi|257053855|ref|YP_003131688.1|	-	0.0093	15.9	0.3	0.025	14.6	0.2	1.7	1	0	0	1	1	1	1	NADH(P)-binding
FMO-like	PF00743.14	gi|257053855|ref|YP_003131688.1|	-	0.16	10.1	0.0	0.22	9.7	0.0	1.1	1	0	0	1	1	1	0	Flavin-binding	monooxygenase-like
Metallophos	PF00149.23	gi|257053857|ref|YP_003131690.1|	-	0.039	13.3	0.2	0.1	11.9	0.0	1.7	1	1	0	2	2	2	0	Calcineurin-like	phosphoesterase
MarR_2	PF12802.2	gi|257053858|ref|YP_003131691.1|	-	1.9e-10	40.2	0.2	7.9e-10	38.2	0.1	2.0	2	0	0	2	2	2	1	MarR	family
HTH_24	PF13412.1	gi|257053858|ref|YP_003131691.1|	-	2.2e-10	39.7	0.0	3.6e-10	39.0	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.17	gi|257053858|ref|YP_003131691.1|	-	1e-08	34.7	0.0	2.5e-08	33.5	0.0	1.6	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.1	gi|257053858|ref|YP_003131691.1|	-	2.7e-08	34.0	0.1	1.1e-07	32.0	0.0	2.1	2	0	0	2	2	1	1	Winged	helix	DNA-binding	domain
HTH_Crp_2	PF13545.1	gi|257053858|ref|YP_003131691.1|	-	4e-06	26.5	0.0	1.8e-05	24.4	0.0	2.0	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
HTH_20	PF12840.2	gi|257053858|ref|YP_003131691.1|	-	1.1e-05	25.1	0.0	2.4e-05	24.0	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.7	gi|257053858|ref|YP_003131691.1|	-	9.9e-05	21.9	0.0	0.00016	21.2	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
HTH_45	PF14947.1	gi|257053858|ref|YP_003131691.1|	-	0.00011	21.9	0.0	0.00018	21.2	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_IclR	PF09339.5	gi|257053858|ref|YP_003131691.1|	-	0.00014	21.3	0.0	0.00037	20.0	0.0	1.7	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_13	PF11972.3	gi|257053858|ref|YP_003131691.1|	-	0.0003	20.5	0.1	0.00072	19.3	0.0	1.6	1	0	0	1	1	1	1	HTH	DNA	binding	domain
TrmB	PF01978.14	gi|257053858|ref|YP_003131691.1|	-	0.0012	18.4	0.1	0.0023	17.6	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.15	gi|257053858|ref|YP_003131691.1|	-	0.0014	18.2	0.0	0.0023	17.5	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
DUF387	PF04079.11	gi|257053858|ref|YP_003131691.1|	-	0.0022	17.4	0.1	0.0039	16.5	0.1	1.3	1	0	0	1	1	1	1	Putative	transcriptional	regulators	(Ypuh-like)
DUF4423	PF14394.1	gi|257053858|ref|YP_003131691.1|	-	0.0041	16.6	0.0	0.0059	16.1	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4423)
Rrf2	PF02082.15	gi|257053858|ref|YP_003131691.1|	-	0.0044	17.0	0.0	0.011	15.8	0.0	1.6	1	0	0	1	1	1	1	Transcriptional	regulator
Fe_dep_repress	PF01325.14	gi|257053858|ref|YP_003131691.1|	-	0.0048	16.8	0.0	0.0085	16.0	0.0	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_12	PF08461.5	gi|257053858|ref|YP_003131691.1|	-	0.0062	16.2	0.0	0.02	14.6	0.0	1.9	2	1	0	2	2	1	1	Ribonuclease	R	winged-helix	domain
HTH_23	PF13384.1	gi|257053858|ref|YP_003131691.1|	-	0.01	15.4	0.0	0.023	14.3	0.0	1.6	1	0	0	1	1	1	1	Homeodomain-like	domain
GntR	PF00392.16	gi|257053858|ref|YP_003131691.1|	-	0.011	15.1	0.4	0.067	12.6	0.1	2.2	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
HTH_36	PF13730.1	gi|257053858|ref|YP_003131691.1|	-	0.016	15.3	0.0	0.023	14.8	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HemN_C	PF06969.11	gi|257053858|ref|YP_003131691.1|	-	0.025	14.6	0.0	0.092	12.8	0.0	1.9	2	0	0	2	2	2	0	HemN	C-terminal	domain
Rio2_N	PF09202.6	gi|257053858|ref|YP_003131691.1|	-	0.032	14.2	0.0	0.059	13.4	0.0	1.3	1	0	0	1	1	1	0	Rio2,	N-terminal
HTH_AsnC-type	PF13404.1	gi|257053858|ref|YP_003131691.1|	-	0.034	13.7	0.3	0.14	11.7	0.0	2.3	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
FaeA	PF04703.7	gi|257053858|ref|YP_003131691.1|	-	0.051	13.7	0.2	0.28	11.3	0.0	2.1	2	0	0	2	2	2	0	FaeA-like	protein
LexA_DNA_bind	PF01726.11	gi|257053858|ref|YP_003131691.1|	-	0.052	13.1	0.0	0.12	12.0	0.0	1.6	1	0	0	1	1	1	0	LexA	DNA	binding	domain
Mnd1	PF03962.10	gi|257053858|ref|YP_003131691.1|	-	0.061	12.9	0.0	0.098	12.3	0.0	1.2	1	0	0	1	1	1	0	Mnd1	family
DUF4364	PF14277.1	gi|257053858|ref|YP_003131691.1|	-	0.11	12.1	0.0	0.15	11.6	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
NMD3	PF04981.8	gi|257053858|ref|YP_003131691.1|	-	0.13	11.3	0.0	0.2	10.7	0.0	1.2	1	0	0	1	1	1	0	NMD3	family
RepL	PF05732.6	gi|257053858|ref|YP_003131691.1|	-	0.15	11.2	0.0	1.1	8.4	0.0	2.0	2	0	0	2	2	2	0	Firmicute	plasmid	replication	protein	(RepL)
KfrA_N	PF11740.3	gi|257053859|ref|YP_003131692.1|	-	0.097	13.1	0.4	0.11	12.9	0.3	1.0	1	0	0	1	1	1	0	Plasmid	replication	region	DNA-binding	N-term
Diphthamide_syn	PF01866.12	gi|257053860|ref|YP_003131693.1|	-	1.3e-93	313.5	0.0	1.6e-93	313.3	0.0	1.1	1	0	0	1	1	1	1	Putative	diphthamide	synthesis	protein
Methyltransf_31	PF13847.1	gi|257053861|ref|YP_003131694.1|	-	5.7e-17	61.6	0.0	8e-17	61.2	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|257053861|ref|YP_003131694.1|	-	2.2e-15	56.8	0.1	5.1e-15	55.7	0.0	1.6	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|257053861|ref|YP_003131694.1|	-	1e-14	55.0	0.1	1.6e-14	54.4	0.1	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|257053861|ref|YP_003131694.1|	-	1.4e-12	47.8	0.0	2.5e-12	47.1	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|257053861|ref|YP_003131694.1|	-	4.7e-10	39.7	0.0	8.1e-10	38.9	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|257053861|ref|YP_003131694.1|	-	9.6e-09	35.1	0.0	1.7e-08	34.3	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|257053861|ref|YP_003131694.1|	-	1.8e-08	34.3	0.6	3.8e-08	33.3	0.4	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|257053861|ref|YP_003131694.1|	-	2.6e-08	33.2	0.0	4.6e-08	32.4	0.0	1.4	2	0	0	2	2	2	1	ubiE/COQ5	methyltransferase	family
MTS	PF05175.9	gi|257053861|ref|YP_003131694.1|	-	5.5e-07	29.1	0.0	7.9e-07	28.6	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	small	domain
CMAS	PF02353.15	gi|257053861|ref|YP_003131694.1|	-	0.00035	19.7	0.0	0.00045	19.3	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
RrnaAD	PF00398.15	gi|257053861|ref|YP_003131694.1|	-	0.00051	19.1	0.0	0.00066	18.7	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
PrmA	PF06325.8	gi|257053861|ref|YP_003131694.1|	-	0.0006	19.0	0.0	0.00081	18.5	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
DREV	PF05219.7	gi|257053861|ref|YP_003131694.1|	-	0.00075	18.4	0.0	0.0011	17.9	0.0	1.2	1	0	0	1	1	1	1	DREV	methyltransferase
UPF0020	PF01170.13	gi|257053861|ref|YP_003131694.1|	-	0.0028	17.2	0.0	0.0041	16.6	0.0	1.2	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Methyltransf_32	PF13679.1	gi|257053861|ref|YP_003131694.1|	-	0.0047	16.6	0.0	0.0067	16.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
ADH_zinc_N	PF00107.21	gi|257053861|ref|YP_003131694.1|	-	0.02	14.4	0.0	0.035	13.6	0.0	1.5	1	0	0	1	1	1	0	Zinc-binding	dehydrogenase
PCMT	PF01135.14	gi|257053861|ref|YP_003131694.1|	-	0.023	14.2	0.0	0.031	13.8	0.0	1.1	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Reovirus_L2	PF06016.6	gi|257053861|ref|YP_003131694.1|	-	0.1	9.5	0.0	0.12	9.3	0.0	1.1	1	0	0	1	1	1	0	Reovirus	core-spike	protein	lambda-2	(L2)
tRNA_U5-meth_tr	PF05958.6	gi|257053861|ref|YP_003131694.1|	-	0.12	11.0	0.0	0.15	10.7	0.0	1.1	1	0	0	1	1	1	0	tRNA	(Uracil-5-)-methyltransferase
RNase_P_Rpp14	PF01900.14	gi|257053862|ref|YP_003131695.1|	-	4.8e-23	81.1	0.0	6.3e-23	80.7	0.0	1.2	1	0	0	1	1	1	1	Rpp14/Pop5	family
Proteasome	PF00227.21	gi|257053863|ref|YP_003131696.1|	-	3.6e-58	196.0	0.0	4.4e-58	195.7	0.0	1.1	1	0	0	1	1	1	1	Proteasome	subunit
Proteasome_A_N	PF10584.4	gi|257053863|ref|YP_003131696.1|	-	2.3e-14	52.3	0.1	4.8e-14	51.3	0.1	1.6	1	0	0	1	1	1	1	Proteasome	subunit	A	N-terminal	signature
DUF4397	PF14344.1	gi|257053864|ref|YP_003131697.1|	-	3.3e-147	482.6	63.5	1.2e-39	135.4	4.1	6.1	3	3	3	6	6	6	6	Domain	of	unknown	function	(DUF4397)
CBM_X2	PF03442.9	gi|257053864|ref|YP_003131697.1|	-	3.2e-06	26.8	3.5	0.12	12.1	0.1	3.7	3	0	0	3	3	3	3	Carbohydrate	binding	domain	X2
Calcipressin	PF04847.7	gi|257053864|ref|YP_003131697.1|	-	0.0031	17.1	0.0	13	5.2	0.0	3.2	3	0	0	3	3	3	1	Calcipressin
Y_Y_Y	PF07495.8	gi|257053864|ref|YP_003131697.1|	-	0.004	16.8	0.2	20	5.0	0.0	3.4	3	0	0	3	3	3	1	Y_Y_Y	domain
PhyH	PF05721.8	gi|257053864|ref|YP_003131697.1|	-	0.0089	16.0	0.1	31	4.5	0.0	3.2	3	0	0	3	3	3	0	Phytanoyl-CoA	dioxygenase	(PhyH)
DUF915	PF06028.6	gi|257053864|ref|YP_003131697.1|	-	0.022	13.8	0.0	10	5.1	0.0	3.0	3	0	0	3	3	3	0	Alpha/beta	hydrolase	of	unknown	function	(DUF915)
HTH_20	PF12840.2	gi|257053865|ref|YP_003131698.1|	-	1.6e-11	43.8	0.0	2.4e-11	43.2	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|257053865|ref|YP_003131698.1|	-	9.4e-10	38.0	0.0	1.2e-09	37.6	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_45	PF14947.1	gi|257053865|ref|YP_003131698.1|	-	0.00084	19.1	0.0	0.0018	18.0	0.0	1.4	2	0	0	2	2	2	1	Winged	helix-turn-helix
HTH_24	PF13412.1	gi|257053865|ref|YP_003131698.1|	-	0.0017	17.6	0.0	0.0026	17.1	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.14	gi|257053865|ref|YP_003131698.1|	-	0.021	14.5	0.0	0.028	14.1	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Penicillinase_R	PF03965.11	gi|257053865|ref|YP_003131698.1|	-	0.032	14.3	0.0	0.041	13.9	0.0	1.2	1	0	0	1	1	1	0	Penicillinase	repressor
HTH_30	PF13556.1	gi|257053865|ref|YP_003131698.1|	-	0.053	13.1	0.1	0.082	12.5	0.0	1.3	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
HTH_12	PF08461.5	gi|257053865|ref|YP_003131698.1|	-	0.08	12.6	0.1	0.13	12.0	0.0	1.5	1	1	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
Syntaxin-6_N	PF09177.6	gi|257053865|ref|YP_003131698.1|	-	0.12	12.7	0.0	0.13	12.6	0.0	1.1	1	0	0	1	1	1	0	Syntaxin	6,	N-terminal
bcl-2I13	PF12201.3	gi|257053866|ref|YP_003131699.1|	-	0.029	13.8	0.6	0.033	13.6	0.4	1.1	1	0	0	1	1	1	0	Bcl2-interacting	killer,	BH3-domain	containing
PIG-U	PF06728.8	gi|257053866|ref|YP_003131699.1|	-	0.25	10.1	5.3	0.11	11.3	2.2	1.5	1	1	1	2	2	2	0	GPI	transamidase	subunit	PIG-U
SBDS	PF01172.13	gi|257053867|ref|YP_003131700.1|	-	1.4e-24	85.6	0.0	2.2e-24	85.0	0.0	1.3	1	0	0	1	1	1	1	Shwachman-Bodian-Diamond	syndrome	(SBDS)	protein
SBDS_C	PF09377.5	gi|257053867|ref|YP_003131700.1|	-	4e-17	62.0	0.0	5.8e-17	61.5	0.0	1.2	1	0	0	1	1	1	1	SBDS	protein	C-terminal	domain
Lar_restr_allev	PF14354.1	gi|257053868|ref|YP_003131701.1|	-	0.016	15.4	3.0	0.038	14.2	2.1	1.6	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
UPF0182	PF03699.8	gi|257053868|ref|YP_003131701.1|	-	0.12	10.3	0.0	0.17	9.7	0.0	1.2	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0182)
STT3	PF02516.9	gi|257053869|ref|YP_003131702.1|	-	1.5e-15	57.1	24.8	4.8e-15	55.4	17.2	1.8	1	1	0	1	1	1	1	Oligosaccharyl	transferase	STT3	subunit
DUF368	PF04018.8	gi|257053870|ref|YP_003131703.1|	-	5.3e-66	222.4	21.7	6.6e-66	222.1	15.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF368)
Glycos_transf_1	PF00534.15	gi|257053871|ref|YP_003131704.1|	-	2.7e-23	82.2	0.0	1.1e-21	76.9	0.0	2.1	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|257053871|ref|YP_003131704.1|	-	1.5e-14	54.2	0.0	2.3e-13	50.4	0.0	2.2	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.1	gi|257053871|ref|YP_003131704.1|	-	3e-14	53.0	0.3	5.7e-14	52.1	0.2	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.1	gi|257053871|ref|YP_003131704.1|	-	5.1e-13	49.4	1.0	1.3e-12	48.1	0.7	1.7	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_transf_4	PF13439.1	gi|257053871|ref|YP_003131704.1|	-	2.7e-09	37.0	0.0	5.9e-09	35.8	0.0	1.7	1	1	0	1	1	1	1	Glycosyltransferase	Family	4
DUF1816	PF08846.5	gi|257053871|ref|YP_003131704.1|	-	0.0066	16.1	0.2	0.013	15.1	0.2	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1816)
AMO	PF02461.11	gi|257053872|ref|YP_003131705.1|	-	0.045	13.4	0.4	0.082	12.6	0.3	1.5	1	0	0	1	1	1	0	Ammonia	monooxygenase
DUF1902	PF08972.6	gi|257053873|ref|YP_003131706.1|	-	0.24	10.9	0.8	0.35	10.4	0.5	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1902)
PhnA_Zn_Ribbon	PF08274.7	gi|257053873|ref|YP_003131706.1|	-	0.39	10.5	1.9	2.5	7.9	0.4	2.1	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
UPF0547	PF10571.4	gi|257053873|ref|YP_003131706.1|	-	0.6	9.8	2.7	3	7.5	0.2	2.1	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Syntaxin-6_N	PF09177.6	gi|257053874|ref|YP_003131707.1|	-	0.059	13.7	0.1	0.084	13.2	0.0	1.2	1	0	0	1	1	1	0	Syntaxin	6,	N-terminal
T2SE	PF00437.15	gi|257053875|ref|YP_003131708.1|	-	4.9e-50	169.9	0.0	7.6e-50	169.3	0.0	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_29	PF13555.1	gi|257053875|ref|YP_003131708.1|	-	0.03	13.8	0.0	0.062	12.8	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
T2SF	PF00482.18	gi|257053876|ref|YP_003131709.1|	-	2.7e-31	108.0	10.8	3.4e-21	75.4	0.9	3.2	3	0	0	3	3	3	2	Type	II	secretion	system	(T2SS),	protein	F
Glyoxalase	PF00903.20	gi|257053877|ref|YP_003131710.1|	-	3.9e-31	107.6	0.1	4.6e-18	65.4	0.0	2.9	2	1	0	2	2	2	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_2	PF12681.2	gi|257053877|ref|YP_003131710.1|	-	4.2e-16	59.5	1.0	8.2e-10	39.2	0.0	2.4	2	0	0	2	2	2	2	Glyoxalase-like	domain
Glyoxalase_4	PF13669.1	gi|257053877|ref|YP_003131710.1|	-	7.7e-08	32.3	0.3	0.073	13.0	0.0	3.5	1	1	2	3	3	3	3	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_3	PF13468.1	gi|257053877|ref|YP_003131710.1|	-	0.02	14.8	4.1	7.4	6.4	0.0	3.5	2	1	2	4	4	4	0	Glyoxalase-like	domain
DoxX	PF07681.7	gi|257053878|ref|YP_003131711.1|	-	1.4e-10	41.4	9.2	1.4e-10	41.4	6.4	1.8	2	0	0	2	2	2	1	DoxX
SURF4	PF02077.10	gi|257053878|ref|YP_003131711.1|	-	0.00049	19.5	1.6	0.0018	17.7	1.1	1.7	1	1	0	1	1	1	1	SURF4	family
DoxX_2	PF13564.1	gi|257053878|ref|YP_003131711.1|	-	0.0057	16.6	12.7	0.011	15.7	7.9	1.9	1	1	1	2	2	2	1	DoxX-like	family
HR_lesion	PF05514.6	gi|257053878|ref|YP_003131711.1|	-	0.008	16.0	1.0	0.12	12.1	0.1	2.0	1	1	1	2	2	2	1	HR-like	lesion-inducing
Rab5ip	PF07019.7	gi|257053878|ref|YP_003131711.1|	-	0.028	14.5	1.2	0.028	14.5	0.8	2.2	2	0	0	2	2	2	0	Rab5-interacting	protein	(Rab5ip)
HxlR	PF01638.12	gi|257053879|ref|YP_003131712.1|	-	2.1e-21	75.3	0.0	2.5e-21	75.1	0.0	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
HTH_27	PF13463.1	gi|257053879|ref|YP_003131712.1|	-	3.6e-07	30.3	0.2	5.6e-07	29.7	0.1	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_34	PF13601.1	gi|257053879|ref|YP_003131712.1|	-	7.2e-06	25.9	0.0	9.5e-06	25.5	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
MarR_2	PF12802.2	gi|257053879|ref|YP_003131712.1|	-	2.9e-05	23.6	0.1	4.6e-05	23.0	0.1	1.2	1	0	0	1	1	1	1	MarR	family
PadR	PF03551.9	gi|257053879|ref|YP_003131712.1|	-	6.7e-05	22.5	0.0	9.9e-05	22.0	0.0	1.3	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_20	PF12840.2	gi|257053879|ref|YP_003131712.1|	-	0.00014	21.6	0.1	0.00021	21.0	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|257053879|ref|YP_003131712.1|	-	0.00021	20.9	0.0	0.00031	20.3	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.17	gi|257053879|ref|YP_003131712.1|	-	0.00085	18.9	0.0	0.0013	18.4	0.0	1.3	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.14	gi|257053879|ref|YP_003131712.1|	-	0.0031	17.1	0.0	0.0045	16.6	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_45	PF14947.1	gi|257053879|ref|YP_003131712.1|	-	0.0096	15.7	0.0	0.012	15.4	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF2250	PF10007.4	gi|257053879|ref|YP_003131712.1|	-	0.013	15.4	0.2	1.1	9.2	0.0	2.2	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
Trp_repressor	PF01371.14	gi|257053879|ref|YP_003131712.1|	-	0.015	15.1	0.0	0.023	14.6	0.0	1.3	1	0	0	1	1	1	0	Trp	repressor	protein
HTH_24	PF13412.1	gi|257053879|ref|YP_003131712.1|	-	0.057	12.8	0.0	0.1	12.0	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
TFIIE_alpha	PF02002.12	gi|257053879|ref|YP_003131712.1|	-	0.096	12.1	0.0	0.12	11.8	0.0	1.2	1	0	0	1	1	1	0	TFIIE	alpha	subunit
GntR	PF00392.16	gi|257053879|ref|YP_003131712.1|	-	0.1	12.0	0.2	0.16	11.3	0.1	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_11	PF08279.7	gi|257053879|ref|YP_003131712.1|	-	0.13	11.8	0.0	0.21	11.2	0.0	1.3	1	0	0	1	1	1	0	HTH	domain
HTH_Crp_2	PF13545.1	gi|257053879|ref|YP_003131712.1|	-	0.14	12.0	0.0	0.22	11.3	0.0	1.3	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_36	PF13730.1	gi|257053879|ref|YP_003131712.1|	-	0.14	12.2	0.0	0.23	11.5	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF4364	PF14277.1	gi|257053879|ref|YP_003131712.1|	-	0.17	11.5	0.0	0.25	10.9	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
DEAD_assoc	PF08494.6	gi|257053880|ref|YP_003131713.1|	-	1.5e-51	174.8	0.4	2.6e-51	174.0	0.3	1.4	1	0	0	1	1	1	1	DEAD/H	associated
DEAD	PF00270.24	gi|257053880|ref|YP_003131713.1|	-	7.6e-31	106.8	0.0	5.2e-29	100.8	0.0	2.3	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.26	gi|257053880|ref|YP_003131713.1|	-	1e-15	57.3	0.0	2.3e-14	53.0	0.0	2.5	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.10	gi|257053880|ref|YP_003131713.1|	-	2.9e-09	36.9	0.0	6.9e-09	35.7	0.0	1.6	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
AAA_19	PF13245.1	gi|257053880|ref|YP_003131713.1|	-	0.09	12.5	0.0	0.38	10.5	0.0	2.1	1	0	0	1	1	1	0	Part	of	AAA	domain
DUF457	PF04307.9	gi|257053881|ref|YP_003131714.1|	-	2.8e-10	39.7	22.5	2.8e-10	39.7	15.6	2.9	1	1	1	2	2	2	1	Predicted	membrane-bound	metal-dependent	hydrolase	(DUF457)
DUF2238	PF09997.4	gi|257053882|ref|YP_003131715.1|	-	0.0001	21.7	0.9	0.0002	20.7	0.7	1.7	1	1	0	1	1	1	1	Predicted	membrane	protein	(DUF2238)
DUF2157	PF09925.4	gi|257053882|ref|YP_003131715.1|	-	0.028	14.0	0.2	0.069	12.7	0.2	1.6	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2157)
FG-GAP_2	PF14312.1	gi|257053884|ref|YP_003131717.1|	-	2.1e-43	146.0	44.5	8.5e-13	48.0	2.2	7.7	7	0	0	7	7	7	7	FG-GAP	repeat
DUF1513	PF07433.6	gi|257053884|ref|YP_003131717.1|	-	0.00013	21.0	2.2	0.92	8.3	0.1	4.1	1	1	4	5	5	5	2	Protein	of	unknown	function	(DUF1513)
AnfO_nitrog	PF09582.5	gi|257053884|ref|YP_003131717.1|	-	0.00084	18.5	0.0	2.6	7.1	0.0	4.0	6	0	0	6	6	6	2	Iron	only	nitrogenase	protein	AnfO	(AnfO_nitrog)
BNR_2	PF13088.1	gi|257053884|ref|YP_003131717.1|	-	0.0024	17.2	0.5	0.14	11.4	0.0	2.7	2	1	0	2	2	2	1	BNR	repeat-like	domain
Pterin_4a	PF01329.14	gi|257053885|ref|YP_003131718.1|	-	7.2e-21	73.7	0.0	8.3e-21	73.5	0.0	1.1	1	0	0	1	1	1	1	Pterin	4	alpha	carbinolamine	dehydratase
GlutR_N	PF05201.10	gi|257053886|ref|YP_003131719.1|	-	6.7e-35	119.9	0.1	1.5e-34	118.7	0.0	1.6	1	0	0	1	1	1	1	Glutamyl-tRNAGlu	reductase,	N-terminal	domain
Shikimate_DH	PF01488.15	gi|257053886|ref|YP_003131719.1|	-	1.2e-24	86.9	2.1	1.4e-24	86.6	0.1	2.1	3	0	0	3	3	3	1	Shikimate	/	quinate	5-dehydrogenase
GlutR_dimer	PF00745.15	gi|257053886|ref|YP_003131719.1|	-	5.1e-24	84.1	1.3	1.2e-23	82.9	0.9	1.6	1	0	0	1	1	1	1	Glutamyl-tRNAGlu	reductase,	dimerisation	domain
2-Hacid_dh_C	PF02826.14	gi|257053886|ref|YP_003131719.1|	-	0.0016	17.6	0.1	0.0031	16.6	0.0	1.5	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Saccharop_dh	PF03435.13	gi|257053886|ref|YP_003131719.1|	-	0.0043	16.0	1.5	0.009	15.0	1.0	1.5	1	0	0	1	1	1	1	Saccharopine	dehydrogenase
THF_DHG_CYH_C	PF02882.14	gi|257053886|ref|YP_003131719.1|	-	0.019	14.0	3.2	0.15	11.1	2.2	2.2	1	1	0	1	1	1	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
DUF1932	PF09130.6	gi|257053886|ref|YP_003131719.1|	-	0.039	13.7	1.3	0.14	11.9	0.9	2.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1932)
NAD_binding_7	PF13241.1	gi|257053886|ref|YP_003131719.1|	-	0.054	13.7	0.6	0.18	12.0	0.4	1.8	1	0	0	1	1	1	0	Putative	NAD(P)-binding
CSD	PF00313.17	gi|257053888|ref|YP_003131721.1|	-	1.4e-20	72.7	0.1	1.6e-20	72.6	0.1	1.0	1	0	0	1	1	1	1	'Cold-shock'	DNA-binding	domain
S1-like	PF14444.1	gi|257053888|ref|YP_003131721.1|	-	0.0044	16.7	1.6	0.0069	16.0	1.1	1.4	1	1	0	1	1	1	1	S1-like
OB_RNB	PF08206.6	gi|257053888|ref|YP_003131721.1|	-	0.02	14.3	3.0	0.03	13.8	2.1	1.3	1	0	0	1	1	1	0	Ribonuclease	B	OB	domain
CusF_Ec	PF11604.3	gi|257053888|ref|YP_003131721.1|	-	0.025	14.4	0.0	0.036	13.9	0.0	1.4	1	1	0	1	1	1	0	Copper	binding	periplasmic	protein	CusF
CSD	PF00313.17	gi|257053889|ref|YP_003131722.1|	-	7.3e-21	73.7	0.2	8.1e-21	73.5	0.1	1.0	1	0	0	1	1	1	1	'Cold-shock'	DNA-binding	domain
S1-like	PF14444.1	gi|257053889|ref|YP_003131722.1|	-	0.0033	17.1	1.3	0.0049	16.5	0.9	1.4	1	1	0	1	1	1	1	S1-like
OB_RNB	PF08206.6	gi|257053889|ref|YP_003131722.1|	-	0.028	13.9	2.2	0.042	13.3	1.5	1.3	1	0	0	1	1	1	0	Ribonuclease	B	OB	domain
CusF_Ec	PF11604.3	gi|257053889|ref|YP_003131722.1|	-	0.079	12.8	0.0	0.098	12.5	0.0	1.3	1	0	0	1	1	1	0	Copper	binding	periplasmic	protein	CusF
Prenyltransf	PF01255.14	gi|257053890|ref|YP_003131723.1|	-	8.7e-72	240.8	0.0	1.2e-71	240.4	0.0	1.1	1	0	0	1	1	1	1	Putative	undecaprenyl	diphosphate	synthase
Aldo_ket_red	PF00248.16	gi|257053891|ref|YP_003131724.1|	-	1.3e-46	158.7	0.0	1.9e-46	158.1	0.0	1.2	1	0	0	1	1	1	1	Aldo/keto	reductase	family
Fer4_17	PF13534.1	gi|257053891|ref|YP_003131724.1|	-	1.3e-10	41.4	6.0	2.7e-10	40.4	4.2	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|257053891|ref|YP_003131724.1|	-	4.8e-10	39.5	7.7	8.4e-10	38.7	5.3	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|257053891|ref|YP_003131724.1|	-	1.7e-09	37.5	5.9	3.2e-09	36.6	4.1	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|257053891|ref|YP_003131724.1|	-	8.3e-07	29.3	2.8	0.00071	19.9	0.2	2.4	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|257053891|ref|YP_003131724.1|	-	1.9e-05	24.3	11.4	0.00065	19.4	8.9	2.3	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|257053891|ref|YP_003131724.1|	-	4.2e-05	22.9	11.9	0.00015	21.1	2.8	2.6	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|257053891|ref|YP_003131724.1|	-	4.5e-05	23.2	4.7	0.022	14.6	0.3	2.4	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|257053891|ref|YP_003131724.1|	-	0.00041	21.0	4.1	0.15	12.8	0.4	2.6	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_7	PF12838.2	gi|257053891|ref|YP_003131724.1|	-	0.00057	20.2	10.6	0.0019	18.5	7.4	1.9	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|257053891|ref|YP_003131724.1|	-	0.0024	18.0	14.8	0.0048	17.1	3.2	2.6	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_6	PF12837.2	gi|257053891|ref|YP_003131724.1|	-	0.0031	17.3	3.2	0.0031	17.3	2.2	2.5	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_2	PF12797.2	gi|257053891|ref|YP_003131724.1|	-	0.0063	16.3	2.9	0.0063	16.3	2.0	2.5	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_20	PF14691.1	gi|257053891|ref|YP_003131724.1|	-	0.071	12.7	0.5	0.071	12.7	0.4	2.2	1	1	1	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_15	PF13459.1	gi|257053891|ref|YP_003131724.1|	-	1.2	9.7	8.5	1	9.9	0.9	3.4	3	0	0	3	3	3	0	4Fe-4S	single	cluster	domain
FAD_binding_2	PF00890.19	gi|257053893|ref|YP_003131726.1|	-	1.7e-124	415.8	7.0	2.8e-124	415.1	4.8	1.4	1	0	0	1	1	1	1	FAD	binding	domain
Succ_DH_flav_C	PF02910.15	gi|257053893|ref|YP_003131726.1|	-	3e-37	127.3	0.4	5e-37	126.6	0.3	1.4	1	0	0	1	1	1	1	Fumarate	reductase	flavoprotein	C-term
Pyr_redox_2	PF07992.9	gi|257053893|ref|YP_003131726.1|	-	5.8e-09	36.1	8.9	7e-07	29.3	6.2	3.1	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|257053893|ref|YP_003131726.1|	-	1.5e-07	30.6	10.0	9.3e-07	28.0	4.1	2.9	2	1	0	2	2	2	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.9	gi|257053893|ref|YP_003131726.1|	-	6.8e-05	21.5	0.2	6.8e-05	21.5	0.1	2.5	3	0	0	3	3	3	1	HI0933-like	protein
GIDA	PF01134.17	gi|257053893|ref|YP_003131726.1|	-	0.00011	21.2	5.4	0.00026	19.9	2.9	2.0	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
Thi4	PF01946.12	gi|257053893|ref|YP_003131726.1|	-	0.00032	19.8	1.4	0.0095	15.0	0.3	3.0	3	0	0	3	3	3	1	Thi4	family
FAD_oxidored	PF12831.2	gi|257053893|ref|YP_003131726.1|	-	0.0016	17.6	7.7	0.0016	17.6	5.3	2.2	2	1	0	2	2	2	1	FAD	dependent	oxidoreductase
AlaDh_PNT_C	PF01262.16	gi|257053893|ref|YP_003131726.1|	-	0.0054	16.3	0.1	0.012	15.1	0.0	1.6	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
FAD_binding_3	PF01494.14	gi|257053893|ref|YP_003131726.1|	-	0.02	13.9	1.1	0.02	13.9	0.8	1.6	2	0	0	2	2	2	0	FAD	binding	domain
Pyr_redox	PF00070.22	gi|257053893|ref|YP_003131726.1|	-	0.034	14.5	0.7	0.11	12.9	0.5	1.9	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_7	PF13241.1	gi|257053893|ref|YP_003131726.1|	-	0.13	12.5	0.0	0.3	11.3	0.0	1.6	1	0	0	1	1	1	0	Putative	NAD(P)-binding
Pyr_redox_3	PF13738.1	gi|257053893|ref|YP_003131726.1|	-	0.18	11.8	1.0	0.6	10.1	0.4	2.0	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.1	gi|257053893|ref|YP_003131726.1|	-	0.35	10.9	2.4	0.66	10.0	0.5	2.4	2	0	0	2	2	2	0	NAD(P)-binding	Rossmann-like	domain
Fer2_3	PF13085.1	gi|257053894|ref|YP_003131727.1|	-	1e-32	112.2	0.1	2.1e-31	108.0	0.0	2.2	2	0	0	2	2	2	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer4_8	PF13183.1	gi|257053894|ref|YP_003131727.1|	-	8.5e-12	44.9	3.6	2.4e-11	43.4	2.5	1.7	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|257053894|ref|YP_003131727.1|	-	2.2e-07	31.1	1.4	8e-07	29.3	1.0	2.0	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|257053894|ref|YP_003131727.1|	-	4.3e-07	30.1	3.6	1.1e-06	28.8	2.5	1.8	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|257053894|ref|YP_003131727.1|	-	4.9e-06	26.8	8.7	0.0083	16.5	0.1	2.6	2	1	1	3	3	2	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|257053894|ref|YP_003131727.1|	-	3.4e-05	23.5	7.0	0.00012	21.7	4.8	1.9	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|257053894|ref|YP_003131727.1|	-	3.8e-05	23.8	19.2	0.00011	22.4	5.8	2.5	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|257053894|ref|YP_003131727.1|	-	0.0029	17.8	9.7	0.015	15.5	2.3	2.7	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_2	PF12797.2	gi|257053894|ref|YP_003131727.1|	-	0.0041	16.9	1.4	0.0041	16.9	1.0	2.7	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4	PF00037.22	gi|257053894|ref|YP_003131727.1|	-	0.0059	16.1	9.2	0.017	14.6	1.8	2.5	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_20	PF14691.1	gi|257053894|ref|YP_003131727.1|	-	0.0094	15.5	6.7	0.68	9.5	0.3	2.4	1	1	1	2	2	2	2	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
YtkA	PF13115.1	gi|257053894|ref|YP_003131727.1|	-	0.045	14.1	1.3	0.12	12.7	0.0	2.3	3	0	0	3	3	2	0	YtkA-like
Fer4_16	PF13484.1	gi|257053894|ref|YP_003131727.1|	-	0.21	12.3	11.0	1.7	9.4	2.8	2.7	1	1	2	3	3	3	0	4Fe-4S	double	cluster	binding	domain
Fer4_6	PF12837.2	gi|257053894|ref|YP_003131727.1|	-	0.22	11.4	10.8	0.19	11.6	2.4	2.6	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|257053894|ref|YP_003131727.1|	-	2.1	8.2	10.6	32	4.4	7.3	2.4	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Sdh_cyt	PF01127.17	gi|257053895|ref|YP_003131728.1|	-	1.1e-12	47.8	4.0	1.4e-12	47.5	2.8	1.1	1	0	0	1	1	1	1	Succinate	dehydrogenase/Fumarate	reductase	transmembrane	subunit
MgtC	PF02308.11	gi|257053895|ref|YP_003131728.1|	-	0.048	13.4	3.3	0.041	13.7	1.2	1.6	1	1	0	1	1	1	0	MgtC	family
DUF2269	PF10027.4	gi|257053895|ref|YP_003131728.1|	-	2.5	7.8	9.2	0.44	10.3	1.5	2.0	2	0	0	2	2	2	0	Predicted	integral	membrane	protein	(DUF2269)
Sdh_cyt	PF01127.17	gi|257053896|ref|YP_003131729.1|	-	4.2e-22	78.2	3.0	4.6e-22	78.1	2.1	1.0	1	0	0	1	1	1	1	Succinate	dehydrogenase/Fumarate	reductase	transmembrane	subunit
Ferric_reduct	PF01794.14	gi|257053896|ref|YP_003131729.1|	-	0.066	13.3	4.5	0.097	12.7	3.1	1.4	1	1	0	1	1	1	0	Ferric	reductase	like	transmembrane	component
Tox-ODYAM1	PF15642.1	gi|257053896|ref|YP_003131729.1|	-	0.17	10.4	0.1	0.23	10.0	0.1	1.2	1	0	0	1	1	1	0	Toxin	in	Odyssella	and	Amoebophilus
PgaD	PF13994.1	gi|257053896|ref|YP_003131729.1|	-	0.46	9.9	6.0	0.27	10.7	2.9	1.4	2	0	0	2	2	2	0	PgaD-like	protein
Ni_hydr_CYTB	PF01292.15	gi|257053896|ref|YP_003131729.1|	-	1.6	8.0	7.6	0.19	11.1	1.4	1.9	1	1	1	2	2	2	0	Prokaryotic	cytochrome	b561
Glyco_hydro_3	PF00933.16	gi|257053897|ref|YP_003131730.1|	-	3.6e-81	272.4	0.0	2.9e-80	269.4	0.0	2.0	1	1	0	1	1	1	1	Glycosyl	hydrolase	family	3	N	terminal	domain
Glyco_hydro_3_C	PF01915.17	gi|257053897|ref|YP_003131730.1|	-	4.6e-64	216.0	0.1	2.3e-63	213.7	0.1	2.1	1	1	0	1	1	1	1	Glycosyl	hydrolase	family	3	C-terminal	domain
Fn3-like	PF14310.1	gi|257053897|ref|YP_003131730.1|	-	1.2e-24	86.0	0.1	2.7e-24	84.9	0.1	1.6	1	0	0	1	1	1	1	Fibronectin	type	III-like	domain
MS_channel	PF00924.13	gi|257053898|ref|YP_003131731.1|	-	1.3e-44	151.9	0.0	1.8e-44	151.5	0.0	1.2	1	0	0	1	1	1	1	Mechanosensitive	ion	channel
Plasmid_stabil	PF05016.9	gi|257053899|ref|YP_003131732.1|	-	0.0031	17.8	0.1	0.005	17.2	0.1	1.3	1	1	0	1	1	1	1	Plasmid	stabilisation	system	protein
RHH_1	PF01402.16	gi|257053900|ref|YP_003131733.1|	-	4.9e-06	26.1	0.1	8.7e-06	25.4	0.1	1.4	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
DUF309	PF03745.9	gi|257053901|ref|YP_003131734.1|	-	2.8e-13	49.1	0.1	4e-13	48.6	0.1	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF309)
Glyco_hydro_2_C	PF02836.12	gi|257053903|ref|YP_003131736.1|	-	7e-31	107.2	0.0	9.4e-31	106.8	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	2,	TIM	barrel	domain
Glyco_hydro_2_N	PF02837.13	gi|257053903|ref|YP_003131736.1|	-	6.8e-27	94.0	0.0	1.2e-26	93.2	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	2,	sugar	binding	domain
Glyco_hydro_2	PF00703.16	gi|257053903|ref|YP_003131736.1|	-	0.00039	20.8	0.0	0.00088	19.6	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	2
BetaGal_dom4_5	PF13364.1	gi|257053903|ref|YP_003131736.1|	-	0.0056	16.9	0.1	0.023	14.9	0.0	2.0	3	0	0	3	3	3	1	Beta-galactosidase	jelly	roll	domain
CBS	PF00571.23	gi|257053904|ref|YP_003131737.1|	-	6.5e-27	93.0	5.0	1.1e-14	53.9	1.0	2.7	2	0	0	2	2	2	2	CBS	domain
ParBc	PF02195.13	gi|257053904|ref|YP_003131737.1|	-	9e-10	38.5	0.2	3.9e-09	36.4	0.1	2.0	1	1	0	1	1	1	1	ParB-like	nuclease	domain
ParBc_2	PF08857.6	gi|257053904|ref|YP_003131737.1|	-	0.00057	19.7	0.1	0.0054	16.5	0.0	2.1	1	1	0	1	1	1	1	Putative	ParB-like	nuclease
DUF1015	PF06245.6	gi|257053904|ref|YP_003131737.1|	-	0.0059	15.1	0.0	0.0084	14.6	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1015)
DHH	PF01368.15	gi|257053905|ref|YP_003131738.1|	-	1.7e-15	56.8	0.0	3.5e-15	55.8	0.0	1.5	1	0	0	1	1	1	1	DHH	family
DHHA1	PF02272.14	gi|257053905|ref|YP_003131738.1|	-	2.1e-13	49.7	0.1	5.7e-13	48.3	0.1	1.8	1	0	0	1	1	1	1	DHHA1	domain
TrkA_N	PF02254.13	gi|257053905|ref|YP_003131738.1|	-	1.2e-05	25.2	0.2	3e-05	23.9	0.1	1.6	1	0	0	1	1	1	1	TrkA-N	domain
LGT	PF01790.13	gi|257053905|ref|YP_003131738.1|	-	0.095	11.6	0.0	0.15	10.9	0.0	1.2	1	0	0	1	1	1	0	Prolipoprotein	diacylglyceryl	transferase
AMP-binding	PF00501.23	gi|257053906|ref|YP_003131739.1|	-	2e-84	283.4	0.4	2.4e-84	283.1	0.3	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.1	gi|257053906|ref|YP_003131739.1|	-	5.9e-17	62.3	1.4	1.3e-16	61.2	1.0	1.7	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
HTH_24	PF13412.1	gi|257053907|ref|YP_003131740.1|	-	2.2e-13	49.3	0.0	3.2e-13	48.8	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
AsnC_trans_reg	PF01037.16	gi|257053907|ref|YP_003131740.1|	-	4.7e-11	42.2	0.0	7.3e-11	41.6	0.0	1.3	1	0	0	1	1	1	1	AsnC	family
HTH_AsnC-type	PF13404.1	gi|257053907|ref|YP_003131740.1|	-	5.5e-10	38.6	0.0	1.1e-09	37.6	0.0	1.5	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.7	gi|257053907|ref|YP_003131740.1|	-	3.2e-08	33.0	0.0	1.1e-07	31.3	0.0	1.9	2	0	0	2	2	2	1	HTH	domain
HTH_IclR	PF09339.5	gi|257053907|ref|YP_003131740.1|	-	8.1e-08	31.7	0.0	1.6e-07	30.7	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
FaeA	PF04703.7	gi|257053907|ref|YP_003131740.1|	-	3.2e-06	27.2	0.0	4.8e-06	26.6	0.0	1.2	1	0	0	1	1	1	1	FaeA-like	protein
HTH_DeoR	PF08220.7	gi|257053907|ref|YP_003131740.1|	-	1.4e-05	24.5	0.0	2.3e-05	23.8	0.0	1.3	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_23	PF13384.1	gi|257053907|ref|YP_003131740.1|	-	1.5e-05	24.5	0.0	2.9e-05	23.5	0.0	1.5	1	0	0	1	1	1	1	Homeodomain-like	domain
Fe_dep_repress	PF01325.14	gi|257053907|ref|YP_003131740.1|	-	2.5e-05	24.1	0.3	7e-05	22.6	0.1	1.8	2	0	0	2	2	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_5	PF01022.15	gi|257053907|ref|YP_003131740.1|	-	3.2e-05	23.4	0.0	5.7e-05	22.6	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.2	gi|257053907|ref|YP_003131740.1|	-	3.6e-05	23.4	0.0	6.6e-05	22.6	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_36	PF13730.1	gi|257053907|ref|YP_003131740.1|	-	7.8e-05	22.7	0.0	0.00013	22.0	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
GntR	PF00392.16	gi|257053907|ref|YP_003131740.1|	-	8.3e-05	21.9	0.1	0.00015	21.1	0.1	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_28	PF13518.1	gi|257053907|ref|YP_003131740.1|	-	9.2e-05	22.3	0.0	0.00016	21.6	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|257053907|ref|YP_003131740.1|	-	0.00035	20.1	0.0	0.00094	18.8	0.0	1.6	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.14	gi|257053907|ref|YP_003131740.1|	-	0.00041	19.9	0.1	0.00072	19.2	0.1	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.17	gi|257053907|ref|YP_003131740.1|	-	0.00045	19.8	0.0	0.00069	19.2	0.0	1.3	1	0	0	1	1	1	1	MarR	family
Sigma70_r4_2	PF08281.7	gi|257053907|ref|YP_003131740.1|	-	0.00048	19.5	0.1	0.0012	18.2	0.0	1.6	2	0	0	2	2	1	1	Sigma-70,	region	4
FeoC	PF09012.5	gi|257053907|ref|YP_003131740.1|	-	0.00074	19.1	0.0	0.0011	18.5	0.0	1.2	1	0	0	1	1	1	1	FeoC	like	transcriptional	regulator
Rrf2	PF02082.15	gi|257053907|ref|YP_003131740.1|	-	0.0011	19.0	0.0	0.0019	18.2	0.0	1.4	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_10	PF04967.7	gi|257053907|ref|YP_003131740.1|	-	0.0018	17.8	0.0	0.0033	16.9	0.0	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_29	PF13551.1	gi|257053907|ref|YP_003131740.1|	-	0.0018	18.4	0.0	0.0025	17.9	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn	helix
LacI	PF00356.16	gi|257053907|ref|YP_003131740.1|	-	0.0046	16.5	0.7	0.094	12.3	0.0	2.8	3	0	0	3	3	3	1	Bacterial	regulatory	proteins,	lacI	family
EAP30	PF04157.11	gi|257053907|ref|YP_003131740.1|	-	0.0056	15.8	0.1	0.0077	15.4	0.0	1.2	1	0	0	1	1	1	1	EAP30/Vps36	family
HTH_Crp_2	PF13545.1	gi|257053907|ref|YP_003131740.1|	-	0.0066	16.2	0.0	0.015	15.0	0.0	1.6	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_6	PF01418.12	gi|257053907|ref|YP_003131740.1|	-	0.0067	16.1	0.0	0.011	15.4	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain,	rpiR	family
HTH_Tnp_ISL3	PF13542.1	gi|257053907|ref|YP_003131740.1|	-	0.0074	15.4	0.0	0.02	14.0	0.0	1.7	2	0	0	2	2	2	1	Helix-turn-helix	domain	of	transposase	family	ISL3
TFIIE_alpha	PF02002.12	gi|257053907|ref|YP_003131740.1|	-	0.0079	15.6	0.0	0.012	15.1	0.0	1.2	1	0	0	1	1	1	1	TFIIE	alpha	subunit
HTH_38	PF13936.1	gi|257053907|ref|YP_003131740.1|	-	0.01	15.3	0.0	0.023	14.2	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
RPA_C	PF08784.6	gi|257053907|ref|YP_003131740.1|	-	0.013	15.8	0.0	0.028	14.8	0.0	1.5	2	0	0	2	2	1	0	Replication	protein	A	C	terminal
HTH_34	PF13601.1	gi|257053907|ref|YP_003131740.1|	-	0.016	15.1	0.0	0.047	13.7	0.0	1.7	2	0	0	2	2	1	0	Winged	helix	DNA-binding	domain
HTH_Mga	PF08280.6	gi|257053907|ref|YP_003131740.1|	-	0.058	13.1	0.0	0.093	12.5	0.0	1.2	1	0	0	1	1	1	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
MerR	PF00376.18	gi|257053907|ref|YP_003131740.1|	-	0.077	12.5	0.0	0.17	11.4	0.0	1.5	1	0	0	1	1	1	0	MerR	family	regulatory	protein
HTH_1	PF00126.22	gi|257053907|ref|YP_003131740.1|	-	0.077	12.7	0.0	0.14	11.9	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_27	PF13463.1	gi|257053907|ref|YP_003131740.1|	-	0.084	13.2	0.0	0.15	12.4	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
TetR_N	PF00440.18	gi|257053907|ref|YP_003131740.1|	-	0.093	12.3	0.0	0.17	11.5	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	tetR	family
Sigma70_r4	PF04545.11	gi|257053907|ref|YP_003131740.1|	-	0.1	11.9	0.0	0.21	10.9	0.0	1.6	1	0	0	1	1	1	0	Sigma-70,	region	4
GerE	PF00196.14	gi|257053907|ref|YP_003131740.1|	-	0.11	11.8	0.0	0.18	11.1	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
HTH_45	PF14947.1	gi|257053907|ref|YP_003131740.1|	-	0.13	12.0	0.0	0.2	11.4	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix
TPP_enzyme_C	PF02775.16	gi|257053908|ref|YP_003131741.1|	-	2.3e-32	111.6	0.0	3.3e-32	111.1	0.0	1.2	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
POR_N	PF01855.14	gi|257053909|ref|YP_003131742.1|	-	2.3e-49	167.9	0.2	4.3e-49	167.0	0.1	1.4	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
POR	PF01558.13	gi|257053909|ref|YP_003131742.1|	-	1.1e-44	152.3	0.1	2.2e-44	151.3	0.0	1.5	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
TPP_enzyme_N	PF02776.13	gi|257053909|ref|YP_003131742.1|	-	3.1e-05	23.5	0.9	6.4e-05	22.4	0.2	1.9	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
GFO_IDH_MocA	PF01408.17	gi|257053910|ref|YP_003131743.1|	-	5.5e-27	94.6	0.1	1.5e-26	93.2	0.0	1.7	2	0	0	2	2	2	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
GFO_IDH_MocA_C	PF02894.12	gi|257053910|ref|YP_003131743.1|	-	1.1e-11	44.5	0.1	2.8e-11	43.1	0.0	1.8	2	0	0	2	2	2	1	Oxidoreductase	family,	C-terminal	alpha/beta	domain
NAD_binding_3	PF03447.11	gi|257053910|ref|YP_003131743.1|	-	0.01	16.2	0.4	0.01	16.2	0.3	2.0	2	0	0	2	2	2	0	Homoserine	dehydrogenase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.14	gi|257053910|ref|YP_003131743.1|	-	0.011	14.8	0.1	0.021	13.9	0.0	1.5	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Semialdhyde_dh	PF01118.19	gi|257053910|ref|YP_003131743.1|	-	0.024	14.9	0.1	0.05	13.8	0.0	1.5	1	0	0	1	1	1	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
DapB_N	PF01113.15	gi|257053910|ref|YP_003131743.1|	-	0.041	13.7	0.5	0.15	11.9	0.2	2.1	1	1	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
Saccharop_dh	PF03435.13	gi|257053910|ref|YP_003131743.1|	-	0.095	11.6	1.6	0.16	10.9	1.1	1.2	1	0	0	1	1	1	0	Saccharopine	dehydrogenase
HATPase_c	PF02518.21	gi|257053911|ref|YP_003131744.1|	-	2.7e-17	62.4	0.5	5.6e-17	61.4	0.2	1.6	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.1	gi|257053911|ref|YP_003131744.1|	-	1.5e-09	37.6	2.2	1.9e-09	37.3	0.2	1.9	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
DUF2328	PF10090.4	gi|257053911|ref|YP_003131744.1|	-	0.0078	15.4	0.0	0.013	14.6	0.0	1.4	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2328)
HATPase_c_5	PF14501.1	gi|257053911|ref|YP_003131744.1|	-	0.018	14.7	0.0	0.042	13.5	0.0	1.6	1	0	0	1	1	1	0	GHKL	domain
IncA	PF04156.9	gi|257053911|ref|YP_003131744.1|	-	0.049	13.2	14.0	0.23	11.0	4.2	2.4	1	1	1	2	2	2	0	IncA	protein
HATPase_c_3	PF13589.1	gi|257053911|ref|YP_003131744.1|	-	0.1	12.2	0.0	0.18	11.4	0.0	1.3	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.20	gi|257053911|ref|YP_003131744.1|	-	0.11	12.4	0.5	0.33	10.9	0.3	1.9	1	1	0	1	1	1	0	His	Kinase	A	(phospho-acceptor)	domain
DUF1700	PF08006.6	gi|257053911|ref|YP_003131744.1|	-	1.6	8.0	6.0	2.4	7.4	4.2	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1700)
Usp	PF00582.21	gi|257053912|ref|YP_003131745.1|	-	2.3e-14	53.7	0.1	2.8e-14	53.5	0.1	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
DNA_photolyase	PF00875.13	gi|257053912|ref|YP_003131745.1|	-	0.091	12.5	0.1	0.25	11.0	0.0	1.7	1	1	0	1	1	1	0	DNA	photolyase
CheC	PF04509.7	gi|257053913|ref|YP_003131746.1|	-	2.4e-15	55.9	0.9	4e-15	55.2	0.1	1.8	2	0	0	2	2	2	1	CheC-like	family
CheX	PF13690.1	gi|257053913|ref|YP_003131746.1|	-	3.8e-05	23.4	0.5	8.6e-05	22.3	0.0	1.8	2	1	0	2	2	2	1	Chemotaxis	phosphatase	CheX
Methyltransf_3	PF01596.12	gi|257053914|ref|YP_003131747.1|	-	1.1e-24	86.6	0.0	1.3e-24	86.3	0.0	1.1	1	0	0	1	1	1	1	O-methyltransferase
Methyltransf_24	PF13578.1	gi|257053914|ref|YP_003131747.1|	-	2.1e-14	54.2	0.3	4.5e-14	53.1	0.1	1.6	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|257053914|ref|YP_003131747.1|	-	4e-13	49.9	0.1	6.2e-13	49.3	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|257053914|ref|YP_003131747.1|	-	8.6e-09	35.1	0.0	1.3e-08	34.5	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|257053914|ref|YP_003131747.1|	-	4.6e-08	33.0	0.0	1.3e-07	31.6	0.0	1.7	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|257053914|ref|YP_003131747.1|	-	0.0001	22.5	0.0	0.00023	21.4	0.0	1.6	2	0	0	2	2	2	1	Methyltransferase	domain
MTS	PF05175.9	gi|257053914|ref|YP_003131747.1|	-	0.00029	20.2	0.0	0.00042	19.7	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
PCMT	PF01135.14	gi|257053914|ref|YP_003131747.1|	-	0.00059	19.4	0.0	0.00081	18.9	0.0	1.1	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Ubie_methyltran	PF01209.13	gi|257053914|ref|YP_003131747.1|	-	0.026	13.6	0.0	0.036	13.1	0.0	1.1	1	0	0	1	1	1	0	ubiE/COQ5	methyltransferase	family
Methyltransf_12	PF08242.7	gi|257053914|ref|YP_003131747.1|	-	0.039	14.4	0.0	0.077	13.4	0.0	1.5	1	1	0	1	1	1	0	Methyltransferase	domain
MAF_flag10	PF01973.13	gi|257053914|ref|YP_003131747.1|	-	0.052	13.0	0.0	0.082	12.4	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF115
MS_channel	PF00924.13	gi|257053915|ref|YP_003131748.1|	-	1.3e-30	106.3	4.1	1.7e-29	102.6	2.8	2.1	1	1	0	1	1	1	1	Mechanosensitive	ion	channel
DUF3040	PF11239.3	gi|257053915|ref|YP_003131748.1|	-	0.02	14.9	3.1	0.035	14.1	1.6	1.8	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3040)
DUF805	PF05656.9	gi|257053915|ref|YP_003131748.1|	-	1.8	8.4	5.1	3.2	7.6	3.5	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF805)
AhpC-TSA	PF00578.16	gi|257053916|ref|YP_003131749.1|	-	1.7e-15	56.8	0.0	2.4e-15	56.2	0.0	1.2	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.5	gi|257053916|ref|YP_003131749.1|	-	4e-12	45.8	0.0	5e-12	45.5	0.0	1.1	1	0	0	1	1	1	1	Redoxin
Thioredoxin_2	PF13098.1	gi|257053916|ref|YP_003131749.1|	-	2.6e-05	24.4	0.0	3.6e-05	23.9	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_8	PF13905.1	gi|257053916|ref|YP_003131749.1|	-	0.0029	17.6	0.0	0.0045	17.0	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin-like
T4_deiodinase	PF00837.12	gi|257053916|ref|YP_003131749.1|	-	0.011	14.7	0.0	0.021	13.8	0.0	1.3	1	1	0	1	1	1	0	Iodothyronine	deiodinase
YukD	PF08817.5	gi|257053917|ref|YP_003131750.1|	-	0.1	13.1	0.2	0.13	12.8	0.1	1.2	1	0	0	1	1	1	0	WXG100	protein	secretion	system	(Wss),	protein	YukD
AsnC_trans_reg	PF01037.16	gi|257053918|ref|YP_003131751.1|	-	4.9e-15	55.0	0.3	1e-14	53.9	0.0	1.6	2	0	0	2	2	2	1	AsnC	family
HTH_AsnC-type	PF13404.1	gi|257053918|ref|YP_003131751.1|	-	4.3e-06	26.1	0.6	2e-05	24.0	0.1	2.1	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.1	gi|257053918|ref|YP_003131751.1|	-	0.00021	20.6	0.1	0.00095	18.5	0.0	2.1	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
FeoC	PF09012.5	gi|257053918|ref|YP_003131751.1|	-	0.006	16.2	0.0	0.011	15.4	0.0	1.3	1	0	0	1	1	1	1	FeoC	like	transcriptional	regulator
HTH_11	PF08279.7	gi|257053918|ref|YP_003131751.1|	-	0.025	14.2	0.1	0.049	13.2	0.0	1.5	1	0	0	1	1	1	0	HTH	domain
MarR_2	PF12802.2	gi|257053918|ref|YP_003131751.1|	-	0.03	14.0	0.1	0.06	13.0	0.1	1.6	1	0	0	1	1	1	0	MarR	family
HTH_20	PF12840.2	gi|257053918|ref|YP_003131751.1|	-	0.033	13.9	0.9	0.14	11.9	0.2	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_27	PF13463.1	gi|257053918|ref|YP_003131751.1|	-	0.056	13.7	0.1	1	9.7	0.1	2.4	2	1	0	2	2	2	0	Winged	helix	DNA-binding	domain
MarR	PF01047.17	gi|257053918|ref|YP_003131751.1|	-	0.082	12.6	0.0	0.14	11.8	0.0	1.3	1	0	0	1	1	1	0	MarR	family
Aminotran_1_2	PF00155.16	gi|257053919|ref|YP_003131752.1|	-	4e-61	206.9	0.0	4.5e-61	206.7	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Beta_elim_lyase	PF01212.16	gi|257053919|ref|YP_003131752.1|	-	8.3e-07	28.4	0.0	1.3e-06	27.8	0.0	1.2	1	0	0	1	1	1	1	Beta-eliminating	lyase
Aminotran_5	PF00266.14	gi|257053919|ref|YP_003131752.1|	-	0.0079	14.9	0.0	0.026	13.2	0.0	1.7	2	0	0	2	2	2	1	Aminotransferase	class-V
RNA_pol_Rpb2_7	PF04560.15	gi|257053919|ref|YP_003131752.1|	-	0.034	14.4	0.0	0.097	12.9	0.0	1.8	1	0	0	1	1	1	0	RNA	polymerase	Rpb2,	domain	7
OKR_DC_1	PF01276.15	gi|257053919|ref|YP_003131752.1|	-	0.043	12.3	0.0	0.11	10.9	0.0	1.6	2	0	0	2	2	2	0	Orn/Lys/Arg	decarboxylase,	major	domain
T2SE	PF00437.15	gi|257053920|ref|YP_003131753.1|	-	4.4e-45	153.6	0.0	7.1e-45	153.0	0.0	1.3	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_29	PF13555.1	gi|257053920|ref|YP_003131753.1|	-	2e-05	24.0	0.1	5.6e-05	22.5	0.1	1.8	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
FtsK_SpoIIIE	PF01580.13	gi|257053920|ref|YP_003131753.1|	-	0.081	12.3	0.0	0.37	10.2	0.0	2.0	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
T2SF	PF00482.18	gi|257053921|ref|YP_003131754.1|	-	1.5e-30	105.6	6.1	3.4e-16	59.2	0.5	3.2	2	0	0	2	2	2	2	Type	II	secretion	system	(T2SS),	protein	F
Phage_holin_1	PF04531.8	gi|257053921|ref|YP_003131754.1|	-	2.5	8.2	5.5	11	6.1	0.0	4.0	4	0	0	4	4	4	0	Bacteriophage	holin
DUF1628	PF07790.6	gi|257053922|ref|YP_003131755.1|	-	0.19	12.5	3.8	1.6	9.5	2.6	2.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1628)
TarH	PF02203.10	gi|257053923|ref|YP_003131756.1|	-	0.056	13.2	0.2	0.079	12.7	0.1	1.1	1	0	0	1	1	1	0	Tar	ligand	binding	domain	homologue
DUF3672	PF12421.3	gi|257053924|ref|YP_003131757.1|	-	0.12	12.5	1.1	0.22	11.6	0.2	1.9	2	0	0	2	2	2	0	Fibronectin	type	III	protein
HCV_NS4a	PF01006.15	gi|257053924|ref|YP_003131757.1|	-	0.48	9.9	2.3	8	6.0	0.2	2.9	3	0	0	3	3	3	0	Hepatitis	C	virus	non-structural	protein	NS4a
DUF1396	PF07161.8	gi|257053926|ref|YP_003131759.1|	-	0.039	13.6	0.0	0.044	13.4	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1396)
CARDB	PF07705.6	gi|257053927|ref|YP_003131760.1|	-	3.7e-20	71.8	123.3	0.00011	22.2	3.2	13.1	10	2	3	14	14	14	9	CARDB
4HBT	PF03061.17	gi|257053927|ref|YP_003131760.1|	-	2.2e-11	43.7	2.4	1.1	9.4	0.0	7.6	8	0	0	8	8	8	4	Thioesterase	superfamily
Glug	PF07581.7	gi|257053927|ref|YP_003131760.1|	-	0.0049	16.9	1.0	0.0049	16.9	0.7	6.9	5	0	0	5	5	5	2	The	GLUG	motif
Extensin-like_C	PF06904.7	gi|257053927|ref|YP_003131760.1|	-	0.38	10.4	0.7	17	5.1	0.0	2.8	2	0	0	2	2	2	0	Extensin-like	protein	C-terminus
Sec34	PF04136.10	gi|257053930|ref|YP_003131763.1|	-	0.057	13.1	0.0	0.09	12.4	0.0	1.2	1	0	0	1	1	1	0	Sec34-like	family
DUF1628	PF07790.6	gi|257053930|ref|YP_003131763.1|	-	0.075	13.7	0.7	2.5	8.8	0.1	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1628)
DUF1628	PF07790.6	gi|257053932|ref|YP_003131765.1|	-	0.00019	22.1	0.0	0.00058	20.5	0.0	1.9	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1628)
DUF4402	PF14352.1	gi|257053933|ref|YP_003131766.1|	-	0.039	14.4	18.7	0.14	12.6	0.5	4.4	4	2	0	4	4	4	0	Domain	of	unknown	function	(DUF4402)
GTP_EFTU	PF00009.22	gi|257053935|ref|YP_003131768.1|	-	1.5e-61	207.0	0.3	2.8e-61	206.2	0.2	1.4	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
EFG_IV	PF03764.13	gi|257053935|ref|YP_003131768.1|	-	1.2e-24	86.2	0.0	3.3e-24	84.7	0.0	1.8	1	0	0	1	1	1	1	Elongation	factor	G,	domain	IV
EFG_C	PF00679.19	gi|257053935|ref|YP_003131768.1|	-	4e-23	81.0	0.1	4.9e-22	77.5	0.0	2.7	3	0	0	3	3	3	1	Elongation	factor	G	C-terminus
EFG_II	PF14492.1	gi|257053935|ref|YP_003131768.1|	-	2.5e-21	75.2	0.6	2.5e-21	75.2	0.4	1.9	2	0	0	2	2	2	1	Elongation	Factor	G,	domain	II
GTP_EFTU_D2	PF03144.20	gi|257053935|ref|YP_003131768.1|	-	9.5e-17	60.8	1.9	4e-16	58.8	1.3	2.2	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.18	gi|257053935|ref|YP_003131768.1|	-	1.3e-05	25.1	0.1	5.9e-05	22.9	0.0	2.1	2	0	0	2	2	2	1	50S	ribosome-binding	GTPase
SRPRB	PF09439.5	gi|257053935|ref|YP_003131768.1|	-	0.076	12.2	0.1	0.25	10.5	0.1	1.8	1	1	0	1	1	1	0	Signal	recognition	particle	receptor	beta	subunit
Aldo_ket_red	PF00248.16	gi|257053936|ref|YP_003131769.1|	-	1.2e-72	244.1	0.0	1.4e-72	243.9	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
UPF0058	PF01893.11	gi|257053938|ref|YP_003131771.1|	-	1.4e-31	108.3	1.3	1.6e-31	108.2	0.9	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0058
Ada3	PF10198.4	gi|257053938|ref|YP_003131771.1|	-	0.024	14.3	0.0	0.026	14.2	0.0	1.2	1	0	0	1	1	1	0	Histone	acetyltransferases	subunit	3
Glu-tRNAGln	PF02686.10	gi|257053938|ref|YP_003131771.1|	-	0.12	12.2	0.6	0.18	11.6	0.4	1.5	1	1	0	1	1	1	0	Glu-tRNAGln	amidotransferase	C	subunit
ECH	PF00378.15	gi|257053939|ref|YP_003131772.1|	-	1.4e-40	138.9	0.0	1.7e-40	138.7	0.0	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase	family
EcsC	PF12787.2	gi|257053939|ref|YP_003131772.1|	-	0.059	12.7	0.3	0.096	12.0	0.2	1.3	1	0	0	1	1	1	0	EcsC	protein	family
ECH_C	PF13766.1	gi|257053939|ref|YP_003131772.1|	-	0.06	13.5	0.1	0.11	12.6	0.1	1.4	1	0	0	1	1	1	0	2-enoyl-CoA	Hydratase	C-terminal	region
FAD_binding_7	PF03441.9	gi|257053940|ref|YP_003131773.1|	-	1.6e-98	329.3	1.0	2e-98	328.9	0.7	1.1	1	0	0	1	1	1	1	FAD	binding	domain	of	DNA	photolyase
DNA_photolyase	PF00875.13	gi|257053940|ref|YP_003131773.1|	-	1.1e-46	158.6	0.2	5.9e-45	152.9	0.0	2.2	2	0	0	2	2	2	2	DNA	photolyase
Sod_Fe_C	PF02777.13	gi|257053941|ref|YP_003131774.1|	-	5.9e-37	125.7	0.2	9.6e-37	125.0	0.1	1.3	1	0	0	1	1	1	1	Iron/manganese	superoxide	dismutases,	C-terminal	domain
Sod_Fe_N	PF00081.17	gi|257053941|ref|YP_003131774.1|	-	7.6e-31	106.2	0.8	1.5e-30	105.2	0.5	1.5	1	0	0	1	1	1	1	Iron/manganese	superoxide	dismutases,	alpha-hairpin	domain
BAF1_ABF1	PF04684.8	gi|257053941|ref|YP_003131774.1|	-	0.15	10.8	0.7	0.17	10.6	0.5	1.2	1	0	0	1	1	1	0	BAF1	/	ABF1	chromatin	reorganising	factor
HATPase_c	PF02518.21	gi|257053942|ref|YP_003131775.1|	-	2.6e-18	65.7	0.1	5.3e-18	64.7	0.1	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.20	gi|257053942|ref|YP_003131775.1|	-	3.2e-12	46.2	1.5	9.9e-12	44.6	1.0	1.9	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_9	PF13426.1	gi|257053942|ref|YP_003131775.1|	-	1.3e-06	28.6	0.4	7.5e-06	26.2	0.0	2.5	3	1	0	3	3	3	1	PAS	domain
PAS_8	PF13188.1	gi|257053942|ref|YP_003131775.1|	-	6.4e-06	25.8	0.2	9.7e-05	22.0	0.0	2.6	2	0	0	2	2	2	1	PAS	domain
PAS_4	PF08448.5	gi|257053942|ref|YP_003131775.1|	-	1.7e-05	24.7	1.1	1.7e-05	24.7	0.8	2.9	3	1	0	3	3	3	1	PAS	fold
HATPase_c_2	PF13581.1	gi|257053942|ref|YP_003131775.1|	-	0.00014	21.6	0.1	0.00038	20.2	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
PAS	PF00989.19	gi|257053942|ref|YP_003131775.1|	-	0.0004	20.1	0.1	0.001	18.8	0.0	1.7	1	1	0	1	1	1	1	PAS	fold
PAS_7	PF12860.2	gi|257053942|ref|YP_003131775.1|	-	0.0063	16.5	0.3	0.038	13.9	0.0	2.5	1	1	1	2	2	2	1	PAS	fold
PAS_10	PF13596.1	gi|257053942|ref|YP_003131775.1|	-	0.016	15.4	0.2	0.037	14.3	0.0	1.7	2	0	0	2	2	2	0	PAS	domain
HATPase_c_5	PF14501.1	gi|257053942|ref|YP_003131775.1|	-	0.077	12.7	0.0	0.2	11.4	0.0	1.6	1	1	0	1	1	1	0	GHKL	domain
TFIID_20kDa	PF03847.8	gi|257053943|ref|YP_003131776.1|	-	0.071	13.4	0.2	0.14	12.4	0.1	1.5	1	1	0	1	1	1	0	Transcription	initiation	factor	TFIID	subunit	A
Lactamase_B	PF00753.22	gi|257053945|ref|YP_003131778.1|	-	1.3e-28	99.9	14.2	1.5e-28	99.7	9.9	1.0	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.2	gi|257053945|ref|YP_003131778.1|	-	1.8e-07	30.8	1.6	2.9e-07	30.2	1.1	1.3	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.1	gi|257053945|ref|YP_003131778.1|	-	0.001	18.8	2.8	0.0056	16.3	2.1	1.9	1	1	1	2	2	2	1	Beta-lactamase	superfamily	domain
HalX	PF08663.5	gi|257053946|ref|YP_003131779.1|	-	1.1e-22	79.7	7.2	2.7e-22	78.5	5.0	1.7	1	0	0	1	1	1	1	HalX	domain
Response_reg	PF00072.19	gi|257053946|ref|YP_003131779.1|	-	3.2e-20	72.2	0.1	5.8e-20	71.3	0.0	1.4	1	0	0	1	1	1	1	Response	regulator	receiver	domain
DUF3585	PF12130.3	gi|257053946|ref|YP_003131779.1|	-	0.035	13.9	0.0	0.054	13.3	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3585)
DASH_Dad3	PF08656.5	gi|257053946|ref|YP_003131779.1|	-	0.042	13.5	0.9	0.18	11.5	0.1	2.2	1	1	1	2	2	2	0	DASH	complex	subunit	Dad3
KaiC	PF06745.8	gi|257053947|ref|YP_003131780.1|	-	0.00014	21.0	0.3	0.0008	18.5	0.2	1.8	1	1	0	1	1	1	1	KaiC
PAXNEB	PF05625.6	gi|257053947|ref|YP_003131780.1|	-	0.047	12.5	0.0	0.1	11.4	0.0	1.5	2	0	0	2	2	2	0	PAXNEB	protein
Tim54	PF11711.3	gi|257053948|ref|YP_003131781.1|	-	0.0085	14.7	0.5	0.012	14.2	0.3	1.2	1	0	0	1	1	1	1	Inner	membrane	protein	import	complex	subunit	Tim54
Nexin_C	PF08628.7	gi|257053948|ref|YP_003131781.1|	-	0.027	14.5	0.2	0.039	14.0	0.1	1.3	1	0	0	1	1	1	0	Sorting	nexin	C	terminal
GvpK	PF05121.7	gi|257053948|ref|YP_003131781.1|	-	0.063	13.0	0.8	0.14	11.9	0.1	1.9	2	1	0	2	2	2	0	Gas	vesicle	protein	K
MutS_I	PF01624.15	gi|257053948|ref|YP_003131781.1|	-	0.065	13.2	0.0	0.1	12.5	0.0	1.3	1	0	0	1	1	1	0	MutS	domain	I
PIN	PF01850.16	gi|257053950|ref|YP_003131783.1|	-	1.5e-09	38.1	0.2	1.9e-09	37.9	0.2	1.1	1	0	0	1	1	1	1	PIN	domain
PIN_4	PF13638.1	gi|257053950|ref|YP_003131783.1|	-	0.039	14.0	0.0	0.05	13.7	0.0	1.1	1	0	0	1	1	1	0	PIN	domain
Response_reg	PF00072.19	gi|257053950|ref|YP_003131783.1|	-	0.11	12.5	0.0	0.26	11.2	0.0	1.5	1	1	0	1	1	1	0	Response	regulator	receiver	domain
Thy1	PF02511.10	gi|257053951|ref|YP_003131784.1|	-	1.3e-56	190.9	0.0	1.6e-56	190.7	0.0	1.0	1	0	0	1	1	1	1	Thymidylate	synthase	complementing	protein
MreB_Mbl	PF06723.8	gi|257053952|ref|YP_003131785.1|	-	1.8e-06	26.8	0.2	3.6e-06	25.8	0.1	1.6	1	1	0	1	1	1	1	MreB/Mbl	protein
BcrAD_BadFG	PF01869.15	gi|257053952|ref|YP_003131785.1|	-	0.0092	15.3	0.0	0.074	12.3	0.0	2.3	2	1	0	2	2	2	1	BadF/BadG/BcrA/BcrD	ATPase	family
Mrr_cat	PF04471.7	gi|257053953|ref|YP_003131786.1|	-	0.0003	20.5	0.0	0.00058	19.6	0.0	1.5	1	0	0	1	1	1	1	Restriction	endonuclease
DUF2564	PF10819.3	gi|257053953|ref|YP_003131786.1|	-	0.023	14.7	3.2	2.8	8.1	0.2	2.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2564)
TPR_11	PF13414.1	gi|257053953|ref|YP_003131786.1|	-	3.3	7.4	9.5	6.4	6.4	0.4	3.8	3	1	0	3	3	3	0	TPR	repeat
DNA_binding_1	PF01035.15	gi|257053954|ref|YP_003131787.1|	-	3.9e-08	32.9	0.0	5.7e-08	32.4	0.0	1.3	1	0	0	1	1	1	1	6-O-methylguanine	DNA	methyltransferase,	DNA	binding	domain
PQQ_2	PF13360.1	gi|257053955|ref|YP_003131788.1|	-	1.9e-36	125.7	9.4	5.3e-24	84.9	4.7	2.7	2	1	0	2	2	2	2	PQQ-like	domain
PQQ_3	PF13570.1	gi|257053955|ref|YP_003131788.1|	-	2.9e-27	94.1	24.6	7.2e-05	22.9	0.1	8.4	7	1	1	8	8	8	6	PQQ-like	domain
PQQ	PF01011.16	gi|257053955|ref|YP_003131788.1|	-	1.6e-15	55.7	7.4	3.8e-05	22.9	0.0	6.5	6	0	0	6	6	6	3	PQQ	enzyme	repeat
CDC48_2	PF02933.12	gi|257053955|ref|YP_003131788.1|	-	0.032	13.8	0.0	0.077	12.6	0.0	1.6	1	0	0	1	1	1	0	Cell	division	protein	48	(CDC48),	domain	2
TAT_signal	PF10518.4	gi|257053955|ref|YP_003131788.1|	-	0.13	12.3	2.8	0.38	10.8	1.9	1.9	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
BAAT_C	PF08840.6	gi|257053956|ref|YP_003131789.1|	-	6.2e-33	114.2	0.0	3.1e-32	111.9	0.0	2.0	2	1	0	2	2	2	1	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
Abhydrolase_5	PF12695.2	gi|257053956|ref|YP_003131789.1|	-	1.2e-08	34.7	0.0	9.5e-08	31.9	0.0	2.3	2	1	0	2	2	2	1	Alpha/beta	hydrolase	family
DLH	PF01738.13	gi|257053956|ref|YP_003131789.1|	-	7e-08	32.0	0.1	0.0012	18.1	0.0	3.0	2	1	0	2	2	2	2	Dienelactone	hydrolase	family
Abhydrolase_6	PF12697.2	gi|257053956|ref|YP_003131789.1|	-	9.2e-08	32.2	4.1	1.5e-07	31.5	2.8	1.3	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Bile_Hydr_Trans	PF04775.9	gi|257053956|ref|YP_003131789.1|	-	0.00054	19.6	0.0	0.0037	16.9	0.0	2.0	1	1	0	1	1	1	1	Acyl-CoA	thioester	hydrolase/BAAT	N-terminal	region
TAT_signal	PF10518.4	gi|257053956|ref|YP_003131789.1|	-	0.11	12.5	0.4	0.34	11.0	0.3	1.9	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Abi	PF02517.11	gi|257053957|ref|YP_003131790.1|	-	9.3e-12	44.9	5.7	9.3e-12	44.9	3.9	2.3	3	0	0	3	3	3	1	CAAX	protease	self-immunity
Lon_C	PF05362.8	gi|257053958|ref|YP_003131791.1|	-	8.6e-35	119.9	4.4	1.3e-34	119.3	3.1	1.3	1	0	0	1	1	1	1	Lon	protease	(S16)	C-terminal	proteolytic	domain
AAA_32	PF13654.1	gi|257053958|ref|YP_003131791.1|	-	3e-30	105.3	0.0	2.3e-22	79.3	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
Mg_chelatase	PF01078.16	gi|257053958|ref|YP_003131791.1|	-	3.2e-16	59.1	0.2	2.8e-10	39.7	0.0	2.4	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
Sigma54_activat	PF00158.21	gi|257053958|ref|YP_003131791.1|	-	4.9e-15	55.3	0.0	4.7e-09	35.9	0.0	2.4	2	0	0	2	2	2	2	Sigma-54	interaction	domain
MCM	PF00493.18	gi|257053958|ref|YP_003131791.1|	-	8.9e-12	44.4	1.1	0.0031	16.3	0.0	3.3	3	0	0	3	3	3	3	MCM2/3/5	family
ChlI	PF13541.1	gi|257053958|ref|YP_003131791.1|	-	1.2e-09	37.7	0.7	2.9e-09	36.4	0.5	1.7	1	0	0	1	1	1	1	Subunit	ChlI	of	Mg-chelatase
AAA_5	PF07728.9	gi|257053958|ref|YP_003131791.1|	-	1.6e-09	37.5	0.0	0.0012	18.5	0.0	2.6	2	0	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.24	gi|257053958|ref|YP_003131791.1|	-	1.4e-06	28.5	0.0	0.036	14.2	0.0	2.7	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
RuvB_N	PF05496.7	gi|257053958|ref|YP_003131791.1|	-	4e-06	26.0	0.1	0.0025	16.8	0.0	2.4	2	0	0	2	2	2	2	Holliday	junction	DNA	helicase	ruvB	N-terminus
Sigma54_activ_2	PF14532.1	gi|257053958|ref|YP_003131791.1|	-	2.9e-05	24.1	0.0	0.17	11.9	0.0	2.4	2	0	0	2	2	2	2	Sigma-54	interaction	domain
TIP49	PF06068.8	gi|257053958|ref|YP_003131791.1|	-	0.00011	21.1	0.6	0.032	12.9	0.0	2.7	3	0	0	3	3	3	1	TIP49	C-terminus
AAA_22	PF13401.1	gi|257053958|ref|YP_003131791.1|	-	0.0002	21.5	0.0	0.014	15.5	0.0	2.5	2	0	0	2	2	2	1	AAA	domain
AAA_3	PF07726.6	gi|257053958|ref|YP_003131791.1|	-	0.00025	20.6	0.2	0.39	10.3	0.0	2.7	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_PrkA	PF08298.6	gi|257053958|ref|YP_003131791.1|	-	0.0019	16.9	0.0	0.091	11.4	0.0	2.2	2	0	0	2	2	2	1	PrkA	AAA	domain
AAA_30	PF13604.1	gi|257053958|ref|YP_003131791.1|	-	0.0023	17.5	0.0	0.038	13.5	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
AAA_19	PF13245.1	gi|257053958|ref|YP_003131791.1|	-	0.0031	17.2	0.0	0.012	15.3	0.0	2.1	2	0	0	2	2	1	1	Part	of	AAA	domain
PhoH	PF02562.11	gi|257053958|ref|YP_003131791.1|	-	0.0043	16.3	0.0	0.0095	15.1	0.0	1.6	1	0	0	1	1	1	1	PhoH-like	protein
AAA_18	PF13238.1	gi|257053958|ref|YP_003131791.1|	-	0.0044	17.3	0.0	0.028	14.7	0.0	2.4	2	0	0	2	2	1	1	AAA	domain
AAA_33	PF13671.1	gi|257053958|ref|YP_003131791.1|	-	0.0047	16.8	0.1	0.037	13.9	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
T2SE	PF00437.15	gi|257053958|ref|YP_003131791.1|	-	0.0079	15.1	0.2	0.085	11.7	0.0	2.5	3	0	0	3	3	3	1	Type	II/IV	secretion	system	protein
Zeta_toxin	PF06414.7	gi|257053958|ref|YP_003131791.1|	-	0.014	14.4	0.0	0.032	13.3	0.0	1.6	1	0	0	1	1	1	0	Zeta	toxin
NACHT	PF05729.7	gi|257053958|ref|YP_003131791.1|	-	0.017	14.8	0.0	0.033	13.8	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
ABC_tran	PF00005.22	gi|257053958|ref|YP_003131791.1|	-	0.019	15.2	0.0	0.09	13.0	0.0	2.1	2	0	0	2	2	1	0	ABC	transporter
DUF815	PF05673.8	gi|257053958|ref|YP_003131791.1|	-	0.023	13.6	0.0	0.048	12.5	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
IstB_IS21	PF01695.12	gi|257053958|ref|YP_003131791.1|	-	0.026	13.9	0.0	0.056	12.8	0.0	1.5	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
TrwB_AAD_bind	PF10412.4	gi|257053958|ref|YP_003131791.1|	-	0.029	13.0	0.0	0.045	12.3	0.0	1.2	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
DUF4116	PF13475.1	gi|257053958|ref|YP_003131791.1|	-	0.056	12.9	0.5	1.7	8.1	0.1	2.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4116)
AAA_17	PF13207.1	gi|257053958|ref|YP_003131791.1|	-	0.12	13.2	3.4	0.8	10.5	0.0	3.1	2	1	1	3	3	3	0	AAA	domain
CTP_transf_2	PF01467.21	gi|257053959|ref|YP_003131792.1|	-	1.1e-15	58.0	0.0	1.6e-15	57.5	0.0	1.2	1	0	0	1	1	1	1	Cytidylyltransferase
Gly_reductase	PF09338.6	gi|257053959|ref|YP_003131792.1|	-	0.14	10.2	0.0	0.19	9.8	0.0	1.1	1	0	0	1	1	1	0	Glycine/sarcosine/betaine	reductase	component	B	subunits
SAM_adeno_trans	PF01887.11	gi|257053960|ref|YP_003131793.1|	-	4.6e-76	255.2	0.0	5.1e-76	255.1	0.0	1.0	1	0	0	1	1	1	1	S-adenosyl-l-methionine	hydroxide	adenosyltransferase
DUF422	PF04240.7	gi|257053961|ref|YP_003131794.1|	-	1.3e-08	34.5	10.7	1.9e-08	33.9	7.4	1.3	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF422)
Cpn60_TCP1	PF00118.19	gi|257053963|ref|YP_003131796.1|	-	2.6e-137	458.3	2.9	3e-137	458.2	2.0	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
Amidohydro_2	PF04909.9	gi|257053964|ref|YP_003131797.1|	-	1.5e-21	77.1	1.0	6.7e-21	75.0	0.7	1.8	1	1	0	1	1	1	1	Amidohydrolase
Glycos_transf_2	PF00535.21	gi|257053965|ref|YP_003131798.1|	-	1e-14	54.6	0.0	1.8e-14	53.8	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|257053965|ref|YP_003131798.1|	-	3.8e-07	30.1	2.1	1.2e-06	28.5	1.4	1.8	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Methyltransf_11	PF08241.7	gi|257053966|ref|YP_003131799.1|	-	6.3e-22	77.8	0.1	2e-21	76.2	0.0	1.7	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|257053966|ref|YP_003131799.1|	-	1.2e-17	64.1	0.0	1.5e-17	63.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|257053966|ref|YP_003131799.1|	-	1.5e-17	63.6	0.0	2.1e-17	63.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|257053966|ref|YP_003131799.1|	-	3.8e-17	62.8	0.0	6.2e-17	62.1	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|257053966|ref|YP_003131799.1|	-	4.3e-15	55.4	0.0	7.5e-15	54.6	0.0	1.3	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_25	PF13649.1	gi|257053966|ref|YP_003131799.1|	-	8.2e-15	55.0	0.0	1.7e-14	54.0	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|257053966|ref|YP_003131799.1|	-	2.1e-13	50.6	0.0	3.7e-13	49.7	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|257053966|ref|YP_003131799.1|	-	9.7e-13	48.1	0.1	1.3e-12	47.7	0.1	1.4	1	1	0	1	1	1	1	Methyltransferase	domain
MetW	PF07021.7	gi|257053966|ref|YP_003131799.1|	-	5e-08	32.5	0.0	6.7e-08	32.1	0.0	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
UPF0020	PF01170.13	gi|257053966|ref|YP_003131799.1|	-	3.2e-07	30.1	0.0	6e-07	29.2	0.0	1.3	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
MTS	PF05175.9	gi|257053966|ref|YP_003131799.1|	-	2.8e-06	26.8	0.0	3.9e-06	26.3	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
RrnaAD	PF00398.15	gi|257053966|ref|YP_003131799.1|	-	4.2e-06	25.9	0.0	5.3e-06	25.6	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
CMAS	PF02353.15	gi|257053966|ref|YP_003131799.1|	-	0.00027	20.1	0.0	0.00036	19.6	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
TehB	PF03848.9	gi|257053966|ref|YP_003131799.1|	-	0.00037	19.7	0.0	0.00051	19.2	0.0	1.2	1	0	0	1	1	1	1	Tellurite	resistance	protein	TehB
TPMT	PF05724.6	gi|257053966|ref|YP_003131799.1|	-	0.00054	19.4	0.0	0.001	18.5	0.0	1.4	1	0	0	1	1	1	1	Thiopurine	S-methyltransferase	(TPMT)
Methyltransf_9	PF08003.6	gi|257053966|ref|YP_003131799.1|	-	0.00077	18.2	0.0	0.0011	17.7	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
Methyltransf_15	PF09445.5	gi|257053966|ref|YP_003131799.1|	-	0.001	18.6	0.0	0.0013	18.3	0.0	1.2	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
NodS	PF05401.6	gi|257053966|ref|YP_003131799.1|	-	0.002	17.5	0.0	0.0028	17.0	0.0	1.2	1	0	0	1	1	1	1	Nodulation	protein	S	(NodS)
Methyltransf_20	PF12147.3	gi|257053966|ref|YP_003131799.1|	-	0.0024	16.8	0.0	0.0037	16.1	0.0	1.3	1	0	0	1	1	1	1	Putative	methyltransferase
Methyltransf_4	PF02390.12	gi|257053966|ref|YP_003131799.1|	-	0.0024	16.9	0.0	0.0032	16.5	0.0	1.2	1	0	0	1	1	1	1	Putative	methyltransferase
Methyltransf_32	PF13679.1	gi|257053966|ref|YP_003131799.1|	-	0.005	16.5	0.0	0.007	16.0	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.14	gi|257053966|ref|YP_003131799.1|	-	0.012	15.1	0.0	0.017	14.6	0.0	1.2	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
FmrO	PF07091.6	gi|257053966|ref|YP_003131799.1|	-	0.019	13.9	0.0	0.025	13.5	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	RNA	methyltransferase	(FmrO)
FtsJ	PF01728.14	gi|257053966|ref|YP_003131799.1|	-	0.057	13.4	0.0	0.068	13.1	0.0	1.3	1	0	0	1	1	1	0	FtsJ-like	methyltransferase
DUF938	PF06080.7	gi|257053966|ref|YP_003131799.1|	-	0.065	12.7	0.0	0.13	11.7	0.0	1.4	2	0	0	2	2	1	0	Protein	of	unknown	function	(DUF938)
tRNA_U5-meth_tr	PF05958.6	gi|257053966|ref|YP_003131799.1|	-	0.067	11.8	0.0	0.11	11.2	0.0	1.3	1	0	0	1	1	1	0	tRNA	(Uracil-5-)-methyltransferase
Methyltransf_3	PF01596.12	gi|257053966|ref|YP_003131799.1|	-	0.072	12.1	0.0	0.11	11.4	0.0	1.2	1	0	0	1	1	1	0	O-methyltransferase
GntR	PF00392.16	gi|257053967|ref|YP_003131800.1|	-	0.00014	21.1	0.1	0.00021	20.6	0.1	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_20	PF12840.2	gi|257053967|ref|YP_003131800.1|	-	0.00015	21.4	0.1	0.00025	20.7	0.1	1.5	1	1	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|257053967|ref|YP_003131800.1|	-	0.0003	20.3	0.2	0.00043	19.8	0.2	1.3	1	1	0	1	1	1	1	MarR	family
HTH_24	PF13412.1	gi|257053967|ref|YP_003131800.1|	-	0.00038	19.7	0.0	0.001	18.3	0.0	1.7	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.17	gi|257053967|ref|YP_003131800.1|	-	0.0012	18.5	0.0	0.0016	18.0	0.0	1.2	1	0	0	1	1	1	1	MarR	family
TFIIE_alpha	PF02002.12	gi|257053967|ref|YP_003131800.1|	-	0.0016	17.9	0.0	0.002	17.6	0.0	1.2	1	0	0	1	1	1	1	TFIIE	alpha	subunit
HTH_27	PF13463.1	gi|257053967|ref|YP_003131800.1|	-	0.0034	17.6	0.1	0.005	17.1	0.1	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_12	PF08461.5	gi|257053967|ref|YP_003131800.1|	-	0.0082	15.8	0.2	0.037	13.7	0.1	2.1	1	1	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
TrmB	PF01978.14	gi|257053967|ref|YP_003131800.1|	-	0.02	14.5	0.1	0.028	14.1	0.1	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Replic_Relax	PF13814.1	gi|257053967|ref|YP_003131800.1|	-	0.044	13.6	0.4	0.056	13.3	0.3	1.2	1	0	0	1	1	1	0	Replication-relaxation
HTH_Crp_2	PF13545.1	gi|257053967|ref|YP_003131800.1|	-	0.051	13.3	0.0	0.079	12.7	0.0	1.4	1	1	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_5	PF01022.15	gi|257053967|ref|YP_003131800.1|	-	0.058	13.0	0.0	0.081	12.6	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Rrf2	PF02082.15	gi|257053967|ref|YP_003131800.1|	-	0.068	13.2	0.0	0.096	12.8	0.0	1.2	1	0	0	1	1	1	0	Transcriptional	regulator
PadR	PF03551.9	gi|257053967|ref|YP_003131800.1|	-	0.12	12.1	0.4	0.16	11.7	0.3	1.4	1	1	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
CxxCxxCC	PF03692.10	gi|257053968|ref|YP_003131801.1|	-	5.5e-16	58.8	0.1	1.1e-15	57.8	0.0	1.6	1	1	0	1	1	1	1	Putative	zinc-	or	iron-chelating	domain
TRAM	PF01938.15	gi|257053969|ref|YP_003131802.1|	-	8.1e-13	47.9	3.1	1.6e-12	47.0	2.1	1.5	2	0	0	2	2	2	1	TRAM	domain
HTH_24	PF13412.1	gi|257053970|ref|YP_003131803.1|	-	0.00049	19.4	0.8	0.72	9.2	0.1	2.8	3	0	0	3	3	3	2	Winged	helix-turn-helix	DNA-binding
LexA_DNA_bind	PF01726.11	gi|257053970|ref|YP_003131803.1|	-	0.00063	19.2	0.0	0.00099	18.6	0.0	1.3	1	0	0	1	1	1	1	LexA	DNA	binding	domain
RepL	PF05732.6	gi|257053970|ref|YP_003131803.1|	-	0.063	12.4	0.0	0.075	12.2	0.0	1.1	1	0	0	1	1	1	0	Firmicute	plasmid	replication	protein	(RepL)
HTH_AsnC-type	PF13404.1	gi|257053970|ref|YP_003131803.1|	-	0.066	12.7	0.5	0.99	9.0	0.3	2.6	1	1	1	2	2	2	0	AsnC-type	helix-turn-helix	domain
HTH_6	PF01418.12	gi|257053970|ref|YP_003131803.1|	-	0.072	12.8	0.0	0.094	12.4	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain,	rpiR	family
TRM	PF02005.11	gi|257053970|ref|YP_003131803.1|	-	0.092	11.6	0.0	0.092	11.6	0.0	1.0	1	0	0	1	1	1	0	N2,N2-dimethylguanosine	tRNA	methyltransferase
HTH_20	PF12840.2	gi|257053971|ref|YP_003131804.1|	-	1.8e-14	53.2	1.2	1.1e-09	37.8	0.1	2.3	2	0	0	2	2	2	2	Helix-turn-helix	domain
HTH_34	PF13601.1	gi|257053971|ref|YP_003131804.1|	-	5.5e-12	45.5	0.0	1.3e-05	25.1	0.0	2.2	2	0	0	2	2	2	2	Winged	helix	DNA-binding	domain
HTH_5	PF01022.15	gi|257053971|ref|YP_003131804.1|	-	3.1e-10	39.5	0.0	2.3e-07	30.3	0.0	2.4	2	0	0	2	2	2	2	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.17	gi|257053971|ref|YP_003131804.1|	-	9.3e-10	38.0	0.1	9e-08	31.7	0.0	2.2	2	0	0	2	2	2	1	MarR	family
MarR_2	PF12802.2	gi|257053971|ref|YP_003131804.1|	-	2.4e-08	33.5	0.8	9.6e-08	31.5	0.1	2.2	2	0	0	2	2	2	1	MarR	family
HTH_24	PF13412.1	gi|257053971|ref|YP_003131804.1|	-	3.5e-07	29.4	0.1	1.3e-06	27.6	0.0	1.9	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.14	gi|257053971|ref|YP_003131804.1|	-	9.5e-07	28.4	0.0	6.8e-05	22.5	0.0	2.2	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.7	gi|257053971|ref|YP_003131804.1|	-	2.4e-06	27.0	0.0	4.4e-06	26.2	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
HTH_DeoR	PF08220.7	gi|257053971|ref|YP_003131804.1|	-	0.00039	19.8	0.0	0.00077	18.9	0.0	1.4	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
Fe_dep_repress	PF01325.14	gi|257053971|ref|YP_003131804.1|	-	0.00043	20.1	0.0	0.00086	19.1	0.0	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
GntR	PF00392.16	gi|257053971|ref|YP_003131804.1|	-	0.00046	19.5	0.0	0.0012	18.2	0.0	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
Rrf2	PF02082.15	gi|257053971|ref|YP_003131804.1|	-	0.00058	19.9	0.1	0.0019	18.2	0.0	1.9	2	0	0	2	2	1	1	Transcriptional	regulator
HTH_IclR	PF09339.5	gi|257053971|ref|YP_003131804.1|	-	0.00061	19.3	2.9	0.007	15.9	0.1	3.0	3	0	0	3	3	3	1	IclR	helix-turn-helix	domain
DUF4423	PF14394.1	gi|257053971|ref|YP_003131804.1|	-	0.00077	19.0	0.0	0.095	12.2	0.0	2.1	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4423)
HTH_27	PF13463.1	gi|257053971|ref|YP_003131804.1|	-	0.00085	19.5	0.3	0.0026	18.0	0.0	2.1	3	0	0	3	3	1	1	Winged	helix	DNA-binding	domain
HTH_Crp_2	PF13545.1	gi|257053971|ref|YP_003131804.1|	-	0.0028	17.4	0.1	0.022	14.5	0.0	2.2	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
HTH_AsnC-type	PF13404.1	gi|257053971|ref|YP_003131804.1|	-	0.0042	16.5	2.9	0.0057	16.1	0.0	2.4	3	0	0	3	3	2	1	AsnC-type	helix-turn-helix	domain
HTH_23	PF13384.1	gi|257053971|ref|YP_003131804.1|	-	0.0067	16.0	0.0	0.018	14.7	0.0	1.7	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_10	PF04967.7	gi|257053971|ref|YP_003131804.1|	-	0.0095	15.4	0.0	0.032	13.8	0.0	1.8	1	0	0	1	1	1	1	HTH	DNA	binding	domain
DUF2250	PF10007.4	gi|257053971|ref|YP_003131804.1|	-	0.02	14.7	0.0	0.032	14.1	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_41	PF14502.1	gi|257053971|ref|YP_003131804.1|	-	0.023	14.3	0.0	0.52	9.9	0.0	2.4	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_Tnp_1	PF01527.15	gi|257053971|ref|YP_003131804.1|	-	0.024	14.5	0.0	0.045	13.6	0.0	1.6	1	1	0	1	1	1	0	Transposase
HTH_36	PF13730.1	gi|257053971|ref|YP_003131804.1|	-	0.037	14.1	0.0	0.065	13.3	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
Band_7	PF01145.20	gi|257053972|ref|YP_003131805.1|	-	1.5e-37	129.2	4.4	1.5e-37	129.2	3.0	2.1	3	1	1	4	4	4	1	SPFH	domain	/	Band	7	family
Band_7_1	PF13421.1	gi|257053972|ref|YP_003131805.1|	-	8.2e-05	22.2	0.2	0.00017	21.1	0.2	1.5	1	0	0	1	1	1	1	SPFH	domain-Band	7	family
DUF719	PF05334.8	gi|257053972|ref|YP_003131805.1|	-	0.0037	17.3	3.7	0.67	9.9	0.3	2.9	3	0	0	3	3	3	2	Protein	of	unknown	function	(DUF719)
NfeD	PF01957.13	gi|257053973|ref|YP_003131806.1|	-	2.9e-14	53.4	1.8	3.8e-14	53.0	1.2	1.1	1	0	0	1	1	1	1	NfeD-like	C-terminal,	partner-binding
DUF308	PF03729.8	gi|257053973|ref|YP_003131806.1|	-	0.011	15.6	6.6	0.011	15.6	4.6	2.1	2	0	0	2	2	2	0	Short	repeat	of	unknown	function	(DUF308)
PGPGW	PF09656.5	gi|257053973|ref|YP_003131806.1|	-	5.6	6.3	16.1	34	3.8	0.0	3.4	3	1	0	3	3	3	0	Putative	transmembrane	protein	(PGPGW)
tRNA-synt_1g	PF09334.6	gi|257053975|ref|YP_003131808.1|	-	7.3e-130	433.1	0.0	1e-129	432.6	0.0	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(M)
tRNA_bind	PF01588.15	gi|257053975|ref|YP_003131808.1|	-	3.9e-21	74.6	0.0	6.3e-21	74.0	0.0	1.3	1	0	0	1	1	1	1	Putative	tRNA	binding	domain
tRNA-synt_1	PF00133.17	gi|257053975|ref|YP_003131808.1|	-	2.7e-13	48.8	0.2	1.5e-07	29.8	0.1	2.9	2	1	0	2	2	2	2	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.8	gi|257053975|ref|YP_003131808.1|	-	2e-08	34.1	0.1	4.5e-08	32.9	0.0	1.5	2	0	0	2	2	2	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1e	PF01406.14	gi|257053975|ref|YP_003131808.1|	-	9.8e-08	31.4	0.0	0.00012	21.3	0.0	2.2	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1f	PF01921.13	gi|257053975|ref|YP_003131808.1|	-	0.00015	20.5	0.9	0.6	8.7	0.0	3.3	2	1	0	3	3	3	3	tRNA	synthetases	class	I	(K)
tRNA-synt_1d	PF00750.14	gi|257053975|ref|YP_003131808.1|	-	0.00048	19.0	1.1	0.023	13.5	0.1	2.2	1	1	0	2	2	2	2	tRNA	synthetases	class	I	(R)
DUF2154	PF09922.4	gi|257053976|ref|YP_003131809.1|	-	2.4e-13	49.8	0.0	5.9e-13	48.5	0.0	1.8	1	0	0	1	1	1	1	Cell	wall-active	antibiotics	response	protein	(DUF2154)
Oxidored_q2	PF00420.19	gi|257053976|ref|YP_003131809.1|	-	5.7	6.6	7.8	14	5.3	0.4	3.0	1	1	1	2	2	2	0	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
PG_binding_1	PF01471.13	gi|257053977|ref|YP_003131810.1|	-	7.2e-16	57.9	0.4	1.7e-15	56.7	0.3	1.7	1	0	0	1	1	1	1	Putative	peptidoglycan	binding	domain
PG_binding_3	PF09374.5	gi|257053977|ref|YP_003131810.1|	-	0.1	12.6	0.0	0.22	11.5	0.0	1.6	1	0	0	1	1	1	0	Predicted	Peptidoglycan	domain
Trypan_PARP	PF05887.6	gi|257053977|ref|YP_003131810.1|	-	4	7.2	23.8	0.3	10.8	12.2	2.4	2	0	0	2	2	2	0	Procyclic	acidic	repetitive	protein	(PARP)
NTP_transferase	PF00483.18	gi|257053978|ref|YP_003131811.1|	-	1.2e-39	136.0	0.0	1.7e-39	135.6	0.0	1.2	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.2	gi|257053978|ref|YP_003131811.1|	-	1.7e-18	67.2	0.7	2.7e-18	66.5	0.2	1.5	2	0	0	2	2	2	1	MobA-like	NTP	transferase	domain
Hexapep	PF00132.19	gi|257053978|ref|YP_003131811.1|	-	3.7e-12	45.1	14.4	7e-05	22.1	0.2	4.5	2	1	3	5	5	5	5	Bacterial	transferase	hexapeptide	(six	repeats)
IspD	PF01128.14	gi|257053978|ref|YP_003131811.1|	-	6.2e-05	22.6	0.0	9.9e-05	21.9	0.0	1.3	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Hexapep_2	PF14602.1	gi|257053978|ref|YP_003131811.1|	-	0.0016	17.9	7.8	0.096	12.2	0.1	3.9	4	0	0	4	4	4	2	Hexapeptide	repeat	of	succinyl-transferase
CTP_transf_3	PF02348.14	gi|257053978|ref|YP_003131811.1|	-	0.12	12.0	0.0	0.2	11.2	0.0	1.3	1	0	0	1	1	1	0	Cytidylyltransferase
MMPL	PF03176.10	gi|257053979|ref|YP_003131812.1|	-	1.3e-38	132.5	43.8	4.8e-28	97.8	8.1	3.7	2	1	0	2	2	2	2	MMPL	family
Sterol-sensing	PF12349.3	gi|257053979|ref|YP_003131812.1|	-	1.9e-12	46.8	10.7	2.1e-07	30.5	0.7	2.5	2	0	0	2	2	2	2	Sterol-sensing	domain	of	SREBP	cleavage-activation
Patched	PF02460.13	gi|257053979|ref|YP_003131812.1|	-	4.7e-10	38.0	21.9	4e-06	25.0	4.3	2.4	2	0	0	2	2	2	2	Patched	family
SecD_SecF	PF02355.11	gi|257053979|ref|YP_003131812.1|	-	4.9e-06	25.8	23.3	0.00017	20.8	2.9	2.6	2	0	0	2	2	2	2	Protein	export	membrane	protein
DUF3552	PF12072.3	gi|257053979|ref|YP_003131812.1|	-	0.0079	15.4	22.5	0.0071	15.5	3.4	2.6	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF3552)
AAA_13	PF13166.1	gi|257053979|ref|YP_003131812.1|	-	0.55	8.6	11.2	0.83	8.0	7.8	1.2	1	0	0	1	1	1	0	AAA	domain
IFT57	PF10498.4	gi|257053979|ref|YP_003131812.1|	-	2.6	6.6	12.7	3.8	6.1	0.7	2.2	2	0	0	2	2	2	0	Intra-flagellar	transport	protein	57
DUF4200	PF13863.1	gi|257053979|ref|YP_003131812.1|	-	3.3	7.6	21.9	1.6	8.6	6.9	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4200)
GAS	PF13851.1	gi|257053979|ref|YP_003131812.1|	-	5.6	6.0	11.9	2.4	7.3	2.9	2.3	2	0	0	2	2	2	0	Growth-arrest	specific	micro-tubule	binding
TPR_MLP1_2	PF07926.7	gi|257053979|ref|YP_003131812.1|	-	9.4	5.9	24.9	0.77	9.5	6.5	2.7	2	0	0	2	2	2	0	TPR/MLP1/MLP2-like	protein
TetR_C_6	PF13977.1	gi|257053980|ref|YP_003131813.1|	-	6e-12	45.6	2.1	6e-12	45.6	1.5	1.6	2	0	0	2	2	2	1	Bacterial	transcriptional	repressor
TetR_N	PF00440.18	gi|257053980|ref|YP_003131813.1|	-	1.1e-08	34.6	0.1	1.8e-08	33.8	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
WHG	PF13305.1	gi|257053980|ref|YP_003131813.1|	-	0.0006	20.3	0.8	0.0024	18.4	0.1	2.2	2	1	1	3	3	3	1	WHG	domain
Methyltransf_33	PF10017.4	gi|257053980|ref|YP_003131813.1|	-	0.082	12.7	0.0	0.21	11.4	0.0	1.7	1	0	0	1	1	1	0	Histidine-specific	methyltransferase,	SAM-dependent
tRNA-synt_1	PF00133.17	gi|257053981|ref|YP_003131814.1|	-	4.3e-65	219.8	0.0	1.9e-25	88.9	0.1	4.8	2	2	2	4	4	4	4	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1_2	PF13603.1	gi|257053981|ref|YP_003131814.1|	-	3.3e-57	192.7	0.0	5.2e-57	192.1	0.0	1.3	1	0	0	1	1	1	1	Leucyl-tRNA	synthetase,	Domain	2
tRNA-synt_1g	PF09334.6	gi|257053981|ref|YP_003131814.1|	-	7e-35	120.4	0.0	4.6e-28	97.9	0.0	3.8	4	0	0	4	4	4	2	tRNA	synthetases	class	I	(M)
Anticodon_1	PF08264.8	gi|257053981|ref|YP_003131814.1|	-	6.1e-13	48.7	0.0	1.6e-12	47.4	0.0	1.7	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1f	PF01921.13	gi|257053981|ref|YP_003131814.1|	-	0.0045	15.7	0.0	0.31	9.6	0.0	2.8	2	1	1	3	3	3	1	tRNA	synthetases	class	I	(K)
tRNA-synt_1e	PF01406.14	gi|257053981|ref|YP_003131814.1|	-	0.031	13.4	0.0	1.9	7.5	0.0	2.2	2	0	0	2	2	2	0	tRNA	synthetases	class	I	(C)	catalytic	domain
DZR	PF12773.2	gi|257053981|ref|YP_003131814.1|	-	0.035	13.9	4.0	5.1	6.9	0.1	2.8	2	1	0	2	2	2	0	Double	zinc	ribbon
tRNA-synt_1d	PF00750.14	gi|257053981|ref|YP_003131814.1|	-	0.037	12.8	0.0	2	7.1	0.0	2.1	2	0	0	2	2	2	0	tRNA	synthetases	class	I	(R)
TF_Zn_Ribbon	PF08271.7	gi|257053981|ref|YP_003131814.1|	-	0.11	11.8	7.2	7.2	6.0	0.1	3.7	3	0	0	3	3	3	0	TFIIB	zinc-binding
Ribosomal_S27e	PF01667.12	gi|257053981|ref|YP_003131814.1|	-	0.12	11.9	0.6	27	4.3	0.0	3.5	4	0	0	4	4	4	0	Ribosomal	protein	S27
DNA_ligase_ZBD	PF03119.11	gi|257053981|ref|YP_003131814.1|	-	0.35	10.6	0.0	0.35	10.6	0.0	3.0	4	0	0	4	4	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
Zn-ribbon_8	PF09723.5	gi|257053981|ref|YP_003131814.1|	-	0.81	9.6	3.5	2.3	8.2	0.1	3.1	3	0	0	3	3	3	0	Zinc	ribbon	domain
UPF0547	PF10571.4	gi|257053981|ref|YP_003131814.1|	-	1	9.1	6.9	4.5	7.0	0.2	3.1	3	0	0	3	3	3	0	Uncharacterised	protein	family	UPF0547
zf-ribbon_3	PF13248.1	gi|257053981|ref|YP_003131814.1|	-	3.2	7.0	9.5	1.5	8.1	0.1	3.5	4	0	0	4	4	4	0	zinc-ribbon	domain
Auto_anti-p27	PF06677.7	gi|257053981|ref|YP_003131814.1|	-	3.8	7.3	4.0	54	3.6	0.0	3.2	3	0	0	3	3	3	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
Lactamase_B_2	PF12706.2	gi|257053982|ref|YP_003131815.1|	-	4.3e-21	75.3	0.4	5.2e-21	75.0	0.3	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.22	gi|257053982|ref|YP_003131815.1|	-	4.8e-12	45.9	7.3	7.9e-12	45.2	5.0	1.7	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_3	PF13483.1	gi|257053982|ref|YP_003131815.1|	-	0.00099	18.8	0.2	0.0015	18.2	0.1	1.4	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Methyltransf_26	PF13659.1	gi|257053982|ref|YP_003131815.1|	-	0.029	14.3	0.1	0.047	13.7	0.0	1.5	1	1	0	1	1	1	0	Methyltransferase	domain
Pyridox_oxidase	PF01243.15	gi|257053983|ref|YP_003131816.1|	-	6.1e-17	61.4	0.0	7.8e-17	61.0	0.0	1.1	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
HATPase_c	PF02518.21	gi|257053984|ref|YP_003131817.1|	-	2.9e-15	55.9	0.0	5.3e-15	55.1	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
GAF_3	PF13492.1	gi|257053984|ref|YP_003131817.1|	-	2.7e-09	37.1	0.4	6e-09	36.0	0.2	1.6	1	0	0	1	1	1	1	GAF	domain
HisKA	PF00512.20	gi|257053984|ref|YP_003131817.1|	-	0.00036	20.4	0.8	0.0012	18.8	0.0	2.2	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
SPOB_a	PF14689.1	gi|257053984|ref|YP_003131817.1|	-	0.00039	19.9	0.0	0.0012	18.3	0.0	1.9	1	0	0	1	1	1	1	Sensor_kinase_SpoOB-type,	alpha-helical	domain
GAF_2	PF13185.1	gi|257053984|ref|YP_003131817.1|	-	0.0013	19.2	1.2	0.0025	18.3	0.4	1.8	2	0	0	2	2	2	1	GAF	domain
HATPase_c_3	PF13589.1	gi|257053984|ref|YP_003131817.1|	-	0.014	15.0	0.0	0.028	14.0	0.0	1.4	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.1	gi|257053984|ref|YP_003131817.1|	-	0.023	14.4	0.0	0.069	12.9	0.0	1.8	1	0	0	1	1	1	0	Histidine	kinase-like	ATPase	domain
eRF1_1	PF03463.10	gi|257053985|ref|YP_003131818.1|	-	6.3e-32	109.9	0.2	1.2e-31	109.0	0.1	1.5	1	0	0	1	1	1	1	eRF1	domain	1
eRF1_3	PF03465.10	gi|257053985|ref|YP_003131818.1|	-	4.9e-23	81.5	0.4	2.3e-22	79.3	0.0	2.3	3	0	0	3	3	3	1	eRF1	domain	3
eRF1_2	PF03464.10	gi|257053985|ref|YP_003131818.1|	-	6.1e-17	62.1	0.0	9.9e-17	61.5	0.0	1.3	1	0	0	1	1	1	1	eRF1	domain	2
HTH_20	PF12840.2	gi|257053986|ref|YP_003131819.1|	-	1e-06	28.4	0.0	2.1e-06	27.4	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
zf-TFIIB	PF13453.1	gi|257053986|ref|YP_003131819.1|	-	0.14	11.3	6.0	1.7	7.9	1.2	2.5	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
Zn_Tnp_IS1	PF03811.8	gi|257053986|ref|YP_003131819.1|	-	1.1	8.8	7.0	14	5.2	0.1	3.8	4	0	0	4	4	4	0	InsA	N-terminal	domain
DZR	PF12773.2	gi|257053986|ref|YP_003131819.1|	-	2.1	8.2	6.6	1.2	9.0	0.1	2.7	2	1	0	2	2	2	0	Double	zinc	ribbon
zinc_ribbon_5	PF13719.1	gi|257053986|ref|YP_003131819.1|	-	2.5	7.7	7.1	19	4.9	0.0	4.0	4	0	0	4	4	4	0	zinc-ribbon	domain
Lar_restr_allev	PF14354.1	gi|257053986|ref|YP_003131819.1|	-	2.8	8.3	5.6	21	5.4	1.0	2.7	2	1	0	2	2	2	0	Restriction	alleviation	protein	Lar
zinc_ribbon_4	PF13717.1	gi|257053986|ref|YP_003131819.1|	-	3.5	7.4	7.1	19	5.0	0.0	4.0	4	0	0	4	4	4	0	zinc-ribbon	domain
UPF0547	PF10571.4	gi|257053986|ref|YP_003131819.1|	-	8.7	6.1	8.0	10	5.9	0.2	3.2	3	0	0	3	3	3	0	Uncharacterised	protein	family	UPF0547
Opy2	PF09463.5	gi|257053986|ref|YP_003131819.1|	-	9.8	6.3	11.3	29	4.8	0.1	3.9	4	0	0	4	4	4	0	Opy2	protein
Peptidase_M23	PF01551.17	gi|257053987|ref|YP_003131820.1|	-	2.8e-14	52.9	0.0	2.8e-14	52.9	0.0	2.2	3	0	0	3	3	3	1	Peptidase	family	M23
DUF422	PF04240.7	gi|257053988|ref|YP_003131821.1|	-	2.3e-10	40.2	20.0	2.3e-10	40.2	13.9	1.9	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF422)
FbpA	PF05833.6	gi|257053989|ref|YP_003131822.1|	-	6.6e-88	295.2	0.0	8.6e-88	294.8	0.0	1.1	1	0	0	1	1	1	1	Fibronectin-binding	protein	A	N-terminus	(FbpA)
DUF814	PF05670.8	gi|257053989|ref|YP_003131822.1|	-	1.4e-26	92.2	0.0	2.3e-26	91.5	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF814)
THOC7	PF05615.8	gi|257053989|ref|YP_003131822.1|	-	1.5	9.0	7.5	3.5	7.8	0.7	2.5	2	0	0	2	2	2	0	Tho	complex	subunit	7
DoxX	PF07681.7	gi|257053990|ref|YP_003131823.1|	-	0.011	16.1	0.3	0.013	15.9	0.2	1.1	1	0	0	1	1	1	0	DoxX
Radical_SAM	PF04055.16	gi|257053991|ref|YP_003131824.1|	-	1.2e-22	80.8	0.0	3e-22	79.5	0.0	1.7	1	0	0	1	1	1	1	Radical	SAM	superfamily
Acetyltransf_1	PF00583.19	gi|257053991|ref|YP_003131824.1|	-	6.9e-06	26.0	0.2	2e-05	24.5	0.1	1.9	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.1	gi|257053991|ref|YP_003131824.1|	-	0.11	12.6	0.1	0.71	10.0	0.1	2.3	2	0	0	2	2	2	0	Acetyltransferase	(GNAT)	domain
tRNA_anti-codon	PF01336.20	gi|257053992|ref|YP_003131825.1|	-	3.3e-12	46.0	0.2	1.3e-11	44.1	0.1	2.0	2	0	0	2	2	2	1	OB-fold	nucleic	acid	binding	domain
S1	PF00575.18	gi|257053992|ref|YP_003131825.1|	-	8.8e-11	41.7	0.0	3.7e-10	39.7	0.0	2.2	1	0	0	1	1	1	1	S1	RNA	binding	domain
tRNA_anti_2	PF13742.1	gi|257053992|ref|YP_003131825.1|	-	0.0002	21.1	0.0	0.00047	19.9	0.0	1.6	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
S1_2	PF13509.1	gi|257053992|ref|YP_003131825.1|	-	0.035	14.0	0.0	0.097	12.6	0.0	1.8	1	0	0	1	1	1	0	S1	domain
PPP4R2	PF09184.6	gi|257053992|ref|YP_003131825.1|	-	3.9	6.9	10.6	7	6.1	7.4	1.3	1	0	0	1	1	1	0	PPP4R2
Yip1	PF04893.12	gi|257053993|ref|YP_003131826.1|	-	3.7e-09	36.3	12.0	8.4e-09	35.1	8.3	1.5	1	1	0	1	1	1	1	Yip1	domain
DUF3084	PF11283.3	gi|257053993|ref|YP_003131826.1|	-	0.35	10.7	2.5	0.37	10.6	0.9	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3084)
FMN_red	PF03358.10	gi|257053994|ref|YP_003131827.1|	-	9.2e-37	125.8	0.0	1.2e-36	125.4	0.0	1.2	1	0	0	1	1	1	1	NADPH-dependent	FMN	reductase
Flavodoxin_2	PF02525.12	gi|257053994|ref|YP_003131827.1|	-	5.6e-11	42.3	0.0	1.3e-10	41.1	0.0	1.6	2	0	0	2	2	2	1	Flavodoxin-like	fold
Flavodoxin_5	PF12724.2	gi|257053994|ref|YP_003131827.1|	-	0.084	12.8	0.0	0.32	10.9	0.0	2.1	1	1	0	1	1	1	0	Flavodoxin	domain
Aminotran_4	PF01063.14	gi|257053995|ref|YP_003131828.1|	-	2.5e-43	148.2	0.0	3.1e-43	147.8	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class	IV
HTH_23	PF13384.1	gi|257053996|ref|YP_003131829.1|	-	2e-08	33.6	0.9	3.9e-08	32.6	0.6	1.6	1	1	0	1	1	1	1	Homeodomain-like	domain
HTH_28	PF13518.1	gi|257053996|ref|YP_003131829.1|	-	4.1e-05	23.4	0.1	6.1e-05	22.9	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.7	gi|257053996|ref|YP_003131829.1|	-	8.4e-05	22.1	0.1	0.00013	21.5	0.1	1.2	1	0	0	1	1	1	1	HTH	domain
HTH_24	PF13412.1	gi|257053996|ref|YP_003131829.1|	-	9.7e-05	21.6	0.0	0.00015	21.1	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_29	PF13551.1	gi|257053996|ref|YP_003131829.1|	-	0.00011	22.3	0.2	0.00013	22.0	0.1	1.3	1	1	0	1	1	1	1	Winged	helix-turn	helix
HTH_7	PF02796.10	gi|257053996|ref|YP_003131829.1|	-	0.00018	21.3	0.0	0.00025	20.8	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
HTH_IclR	PF09339.5	gi|257053996|ref|YP_003131829.1|	-	0.00049	19.6	0.1	0.00066	19.2	0.0	1.2	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Sigma70_r4_2	PF08281.7	gi|257053996|ref|YP_003131829.1|	-	0.00053	19.3	0.1	0.00073	18.9	0.1	1.2	1	0	0	1	1	1	1	Sigma-70,	region	4
Sigma70_r3	PF04539.11	gi|257053996|ref|YP_003131829.1|	-	0.00084	19.1	0.1	0.0012	18.7	0.1	1.3	1	0	0	1	1	1	1	Sigma-70	region	3
GerE	PF00196.14	gi|257053996|ref|YP_003131829.1|	-	0.0013	18.0	0.0	0.0018	17.5	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	luxR	family
HTH_31	PF13560.1	gi|257053996|ref|YP_003131829.1|	-	0.0018	18.4	0.5	0.0023	18.1	0.3	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
Sigma70_r4	PF04545.11	gi|257053996|ref|YP_003131829.1|	-	0.0021	17.2	0.1	0.0033	16.6	0.0	1.3	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_20	PF12840.2	gi|257053996|ref|YP_003131829.1|	-	0.0028	17.4	0.1	0.0048	16.6	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_10	PF04967.7	gi|257053996|ref|YP_003131829.1|	-	0.0031	17.0	0.1	0.0063	16.0	0.1	1.5	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_3	PF01381.17	gi|257053996|ref|YP_003131829.1|	-	0.0038	17.0	0.0	0.0063	16.3	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix
TrmB	PF01978.14	gi|257053996|ref|YP_003131829.1|	-	0.0043	16.7	0.2	0.017	14.8	0.1	1.8	1	1	1	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
Phage_NinH	PF06322.6	gi|257053996|ref|YP_003131829.1|	-	0.0054	16.3	0.1	0.0075	15.8	0.1	1.2	1	0	0	1	1	1	1	Phage	NinH	protein
HTH_Mga	PF08280.6	gi|257053996|ref|YP_003131829.1|	-	0.0056	16.4	0.0	0.0071	16.0	0.0	1.2	1	0	0	1	1	1	1	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
RepB	PF07506.6	gi|257053996|ref|YP_003131829.1|	-	0.0091	15.8	0.1	0.011	15.6	0.1	1.1	1	0	0	1	1	1	1	RepB	plasmid	partitioning	protein
HTH_AsnC-type	PF13404.1	gi|257053996|ref|YP_003131829.1|	-	0.016	14.6	0.1	0.027	14.0	0.1	1.3	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
HTH_38	PF13936.1	gi|257053996|ref|YP_003131829.1|	-	0.017	14.6	1.5	0.029	13.9	0.2	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_17	PF12728.2	gi|257053996|ref|YP_003131829.1|	-	0.019	15.1	0.1	0.033	14.4	0.1	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
FaeA	PF04703.7	gi|257053996|ref|YP_003131829.1|	-	0.029	14.5	0.0	0.039	14.1	0.0	1.2	1	0	0	1	1	1	0	FaeA-like	protein
HTH_30	PF13556.1	gi|257053996|ref|YP_003131829.1|	-	0.037	13.6	0.3	0.12	11.9	0.1	1.8	2	0	0	2	2	2	0	PucR	C-terminal	helix-turn-helix	domain
HTH_26	PF13443.1	gi|257053996|ref|YP_003131829.1|	-	0.042	14.0	0.0	0.064	13.4	0.0	1.3	1	0	0	1	1	1	0	Cro/C1-type	HTH	DNA-binding	domain
Sigma70_ECF	PF07638.6	gi|257053996|ref|YP_003131829.1|	-	0.045	13.4	0.0	0.055	13.1	0.0	1.1	1	0	0	1	1	1	0	ECF	sigma	factor
HTH_5	PF01022.15	gi|257053996|ref|YP_003131829.1|	-	0.081	12.6	0.0	0.12	12.0	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
GntR	PF00392.16	gi|257053996|ref|YP_003131829.1|	-	0.09	12.2	0.1	0.18	11.2	0.1	1.5	1	1	1	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
PAX	PF00292.13	gi|257053996|ref|YP_003131829.1|	-	0.093	12.4	0.0	0.11	12.1	0.0	1.1	1	0	0	1	1	1	0	'Paired	box'	domain
MarR_2	PF12802.2	gi|257053996|ref|YP_003131829.1|	-	0.095	12.3	0.2	0.14	11.8	0.1	1.3	1	0	0	1	1	1	0	MarR	family
HTH_Tnp_1	PF01527.15	gi|257053996|ref|YP_003131829.1|	-	0.13	12.1	0.0	0.18	11.7	0.0	1.3	1	0	0	1	1	1	0	Transposase
MerR	PF00376.18	gi|257053996|ref|YP_003131829.1|	-	0.14	11.7	0.2	0.22	11.1	0.2	1.4	1	0	0	1	1	1	0	MerR	family	regulatory	protein
HTH_8	PF02954.14	gi|257053996|ref|YP_003131829.1|	-	0.16	11.5	0.5	0.24	10.9	0.3	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	Fis	family
Terminase_5	PF06056.7	gi|257053996|ref|YP_003131829.1|	-	0.16	11.5	0.2	0.47	10.0	0.0	1.8	2	0	0	2	2	2	0	Putative	ATPase	subunit	of	terminase	(gpP-like)
ABC_membrane	PF00664.18	gi|257053997|ref|YP_003131830.1|	-	6.4e-37	127.4	2.2	7.9e-37	127.1	1.6	1.1	1	0	0	1	1	1	1	ABC	transporter	transmembrane	region
ABC_tran	PF00005.22	gi|257053997|ref|YP_003131830.1|	-	4.9e-35	120.8	0.0	8.9e-35	119.9	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
SMC_N	PF02463.14	gi|257053997|ref|YP_003131830.1|	-	0.00028	20.1	0.0	0.005	16.0	0.0	1.8	1	1	1	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_17	PF13207.1	gi|257053997|ref|YP_003131830.1|	-	0.00034	21.4	0.0	0.0031	18.3	0.0	2.7	2	1	0	2	2	2	1	AAA	domain
Zeta_toxin	PF06414.7	gi|257053997|ref|YP_003131830.1|	-	0.0011	18.0	0.0	0.0033	16.5	0.0	1.7	1	1	0	1	1	1	1	Zeta	toxin
AAA_21	PF13304.1	gi|257053997|ref|YP_003131830.1|	-	0.0017	18.3	0.0	0.092	12.6	0.0	2.8	2	1	1	3	3	2	1	AAA	domain
ACR_tran	PF00873.14	gi|257053997|ref|YP_003131830.1|	-	0.0021	15.5	0.1	0.0034	14.8	0.1	1.2	1	0	0	1	1	1	1	AcrB/AcrD/AcrF	family
UPF0079	PF02367.12	gi|257053997|ref|YP_003131830.1|	-	0.0028	17.2	0.0	0.0066	16.0	0.0	1.5	1	0	0	1	1	1	1	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_33	PF13671.1	gi|257053997|ref|YP_003131830.1|	-	0.0057	16.5	0.0	0.015	15.1	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|257053997|ref|YP_003131830.1|	-	0.0073	16.3	0.1	0.015	15.2	0.0	1.5	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_18	PF13238.1	gi|257053997|ref|YP_003131830.1|	-	0.0076	16.5	0.0	0.037	14.3	0.0	2.2	1	1	0	1	1	1	1	AAA	domain
DUF258	PF03193.11	gi|257053997|ref|YP_003131830.1|	-	0.0081	15.3	0.0	0.015	14.5	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA	PF00004.24	gi|257053997|ref|YP_003131830.1|	-	0.018	15.2	0.0	0.085	13.0	0.0	2.3	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.1	gi|257053997|ref|YP_003131830.1|	-	0.03	14.4	0.0	0.071	13.2	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
DUF2107	PF09880.4	gi|257053997|ref|YP_003131830.1|	-	0.031	14.1	0.3	0.081	12.8	0.2	1.6	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2107)
AAA_25	PF13481.1	gi|257053997|ref|YP_003131830.1|	-	0.033	13.5	0.1	0.098	12.0	0.1	1.8	1	1	0	1	1	1	0	AAA	domain
ABC_ATPase	PF09818.4	gi|257053997|ref|YP_003131830.1|	-	0.039	12.5	0.1	0.062	11.8	0.1	1.2	1	0	0	1	1	1	0	Predicted	ATPase	of	the	ABC	class
AAA_29	PF13555.1	gi|257053997|ref|YP_003131830.1|	-	0.059	12.8	0.0	0.16	11.4	0.0	1.8	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
DUF87	PF01935.12	gi|257053997|ref|YP_003131830.1|	-	0.085	12.6	0.0	0.17	11.6	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF87
AAA_5	PF07728.9	gi|257053997|ref|YP_003131830.1|	-	0.09	12.5	0.1	0.5	10.1	0.0	2.3	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_23	PF13476.1	gi|257053997|ref|YP_003131830.1|	-	0.09	13.0	0.0	0.22	11.8	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
MobB	PF03205.9	gi|257053997|ref|YP_003131830.1|	-	0.1	12.3	0.0	0.27	10.9	0.0	1.7	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
DUF4110	PF13422.1	gi|257053997|ref|YP_003131830.1|	-	0.13	12.1	0.1	0.27	11.1	0.1	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4110)
AAA_19	PF13245.1	gi|257053997|ref|YP_003131830.1|	-	6.7	6.5	5.7	0.57	9.9	0.1	2.2	3	0	0	3	3	1	0	Part	of	AAA	domain
DUF1814	PF08843.6	gi|257053998|ref|YP_003131831.1|	-	1e-33	117.0	0.1	1.2e-33	116.8	0.1	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase	of	unknown	function	(DUF1814)
DUF4095	PF13338.1	gi|257053999|ref|YP_003131832.1|	-	2.7e-24	85.7	0.1	5.2e-24	84.7	0.0	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4095)
HTH_27	PF13463.1	gi|257053999|ref|YP_003131832.1|	-	0.00014	22.1	0.1	0.00048	20.3	0.0	1.9	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.14	gi|257053999|ref|YP_003131832.1|	-	0.00021	20.9	0.0	0.00049	19.7	0.0	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.5	gi|257053999|ref|YP_003131832.1|	-	0.0046	16.5	0.0	0.0095	15.5	0.0	1.6	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Rrf2	PF02082.15	gi|257053999|ref|YP_003131832.1|	-	0.014	15.4	0.0	0.035	14.2	0.0	1.6	1	0	0	1	1	1	0	Transcriptional	regulator
MarR_2	PF12802.2	gi|257053999|ref|YP_003131832.1|	-	0.023	14.3	0.0	0.05	13.2	0.0	1.5	1	0	0	1	1	1	0	MarR	family
MarR	PF01047.17	gi|257053999|ref|YP_003131832.1|	-	0.028	14.1	0.0	0.1	12.3	0.0	1.9	2	0	0	2	2	2	0	MarR	family
HTH_Crp_2	PF13545.1	gi|257053999|ref|YP_003131832.1|	-	0.03	14.1	0.0	0.071	12.9	0.0	1.7	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HhH-GPD	PF00730.20	gi|257054000|ref|YP_003131833.1|	-	3.3e-17	62.7	0.0	7.4e-17	61.5	0.0	1.6	2	0	0	2	2	2	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH	PF00633.18	gi|257054000|ref|YP_003131833.1|	-	7.3e-09	34.8	0.0	1.2e-07	31.0	0.0	2.4	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
HHH_5	PF14520.1	gi|257054000|ref|YP_003131833.1|	-	0.17	12.0	2.8	0.82	9.8	0.0	3.0	3	1	0	3	3	3	0	Helix-hairpin-helix	domain
PadR	PF03551.9	gi|257054002|ref|YP_003131835.1|	-	1.2e-17	63.3	2.0	1.5e-17	63.1	1.4	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_27	PF13463.1	gi|257054002|ref|YP_003131835.1|	-	0.00011	22.4	0.0	0.00014	22.1	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
DUF1495	PF07381.6	gi|257054002|ref|YP_003131835.1|	-	0.0025	17.4	0.0	0.0038	16.8	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain	(DUF1495)
HTH_45	PF14947.1	gi|257054002|ref|YP_003131835.1|	-	0.0048	16.6	0.0	0.0065	16.2	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_34	PF13601.1	gi|257054002|ref|YP_003131835.1|	-	0.027	14.4	0.0	0.033	14.2	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
MarR_2	PF12802.2	gi|257054002|ref|YP_003131835.1|	-	0.031	13.9	0.6	2.2	7.9	0.1	2.5	3	0	0	3	3	3	0	MarR	family
TrmB	PF01978.14	gi|257054002|ref|YP_003131835.1|	-	0.078	12.6	0.1	0.11	12.2	0.1	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HemN_C	PF06969.11	gi|257054002|ref|YP_003131835.1|	-	0.11	12.5	0.0	0.19	11.8	0.0	1.5	1	1	0	1	1	1	0	HemN	C-terminal	domain
Penicillinase_R	PF03965.11	gi|257054002|ref|YP_003131835.1|	-	0.12	12.4	0.1	0.14	12.2	0.0	1.2	1	0	0	1	1	1	0	Penicillinase	repressor
HypA	PF01155.14	gi|257054003|ref|YP_003131836.1|	-	0.0088	15.7	0.8	0.015	14.9	0.5	1.4	1	0	0	1	1	1	1	Hydrogenase	expression/synthesis	hypA	family
TF_Zn_Ribbon	PF08271.7	gi|257054003|ref|YP_003131836.1|	-	0.013	14.8	2.7	0.031	13.6	1.9	1.7	1	0	0	1	1	1	0	TFIIB	zinc-binding
DZR	PF12773.2	gi|257054003|ref|YP_003131836.1|	-	0.027	14.2	0.4	0.05	13.4	0.3	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
FYVE_2	PF02318.11	gi|257054003|ref|YP_003131836.1|	-	0.043	13.7	0.1	1.6	8.6	0.1	2.2	2	0	0	2	2	2	0	FYVE-type	zinc	finger
TFIIS_C	PF01096.13	gi|257054003|ref|YP_003131836.1|	-	0.057	13.0	1.4	6.4	6.4	0.5	2.3	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
AAA_34	PF13872.1	gi|257054003|ref|YP_003131836.1|	-	0.085	11.6	0.0	0.45	9.2	0.0	1.8	2	0	0	2	2	2	0	P-loop	containing	NTP	hydrolase	pore-1
DUF1451	PF07295.6	gi|257054003|ref|YP_003131836.1|	-	0.12	12.1	1.8	0.16	11.7	0.3	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1451)
Zn_Tnp_IS1595	PF12760.2	gi|257054003|ref|YP_003131836.1|	-	0.18	11.6	4.4	6.4	6.6	0.1	2.5	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
DNA_RNApol_7kD	PF03604.8	gi|257054003|ref|YP_003131836.1|	-	0.22	11.0	1.2	0.59	9.6	0.9	1.8	1	1	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
OrfB_Zn_ribbon	PF07282.6	gi|257054003|ref|YP_003131836.1|	-	0.23	11.1	1.8	0.48	10.1	1.2	1.6	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Zn-ribbon_8	PF09723.5	gi|257054003|ref|YP_003131836.1|	-	0.27	11.2	2.7	1.1	9.2	1.9	2.0	1	1	0	1	1	1	0	Zinc	ribbon	domain
HHH_5	PF14520.1	gi|257054003|ref|YP_003131836.1|	-	0.3	11.3	3.1	1.2	9.3	2.2	2.1	1	1	0	1	1	1	0	Helix-hairpin-helix	domain
zf-ribbon_3	PF13248.1	gi|257054003|ref|YP_003131836.1|	-	0.44	9.8	4.6	6.8	6.0	3.2	2.3	1	1	1	2	2	2	0	zinc-ribbon	domain
PhnA_Zn_Ribbon	PF08274.7	gi|257054003|ref|YP_003131836.1|	-	1.4	8.7	5.0	0.88	9.4	1.9	1.8	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
THF_DHG_CYH_C	PF02882.14	gi|257054004|ref|YP_003131837.1|	-	1.5e-66	222.4	0.9	2.2e-66	221.8	0.6	1.2	1	0	0	1	1	1	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
THF_DHG_CYH	PF00763.18	gi|257054004|ref|YP_003131837.1|	-	8.6e-38	128.9	0.7	1.3e-37	128.4	0.5	1.2	1	0	0	1	1	1	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	catalytic	domain
OrfB_IS605	PF01385.14	gi|257054006|ref|YP_003131839.1|	-	1.1e-55	188.4	0.0	1.4e-55	188.1	0.0	1.1	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.6	gi|257054006|ref|YP_003131839.1|	-	1.4e-15	56.7	0.5	2.6e-15	55.8	0.4	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Toprim_4	PF13662.1	gi|257054007|ref|YP_003131840.1|	-	0.0086	16.0	0.1	0.019	14.9	0.1	1.5	1	0	0	1	1	1	1	Toprim	domain
FAP	PF07174.6	gi|257054007|ref|YP_003131840.1|	-	0.074	12.3	5.2	0.13	11.4	3.6	1.4	1	0	0	1	1	1	0	Fibronectin-attachment	protein	(FAP)
SHMT	PF00464.14	gi|257054008|ref|YP_003131841.1|	-	2.2e-150	500.5	0.0	2.6e-150	500.2	0.0	1.0	1	0	0	1	1	1	1	Serine	hydroxymethyltransferase
Aminotran_1_2	PF00155.16	gi|257054008|ref|YP_003131841.1|	-	1.4e-08	34.0	0.0	3.1e-08	32.9	0.0	1.4	1	1	0	1	1	1	1	Aminotransferase	class	I	and	II
Beta_elim_lyase	PF01212.16	gi|257054008|ref|YP_003131841.1|	-	9.7e-05	21.6	0.0	0.00063	18.9	0.0	1.9	1	1	0	1	1	1	1	Beta-eliminating	lyase
Trypsin_2	PF13365.1	gi|257054008|ref|YP_003131841.1|	-	0.064	13.2	0.0	0.11	12.4	0.0	1.5	1	1	0	1	1	1	0	Trypsin-like	peptidase	domain
DegT_DnrJ_EryC1	PF01041.12	gi|257054008|ref|YP_003131841.1|	-	0.18	10.8	1.8	0.34	9.9	1.2	1.6	1	1	0	1	1	1	0	DegT/DnrJ/EryC1/StrS	aminotransferase	family
DUF348	PF03990.9	gi|257054008|ref|YP_003131841.1|	-	0.24	10.9	2.3	0.39	10.3	0.1	2.3	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF348)
DUF876	PF05936.7	gi|257054009|ref|YP_003131842.1|	-	0.071	11.5	0.1	0.099	11.0	0.1	1.2	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF876)
YcaO	PF02624.11	gi|257054010|ref|YP_003131843.1|	-	3.1e-63	214.2	7.0	3.6e-63	214.0	4.3	1.5	1	1	0	1	1	1	1	YcaO-like	family
DUF63	PF01889.12	gi|257054011|ref|YP_003131844.1|	-	3.9e-33	115.6	10.8	3.8e-32	112.4	5.8	2.8	2	1	0	2	2	2	1	Membrane	protein	of	unknown	function	DUF63
AMP-binding	PF00501.23	gi|257054012|ref|YP_003131845.1|	-	0.0078	14.6	0.0	0.26	9.6	0.0	2.4	3	0	0	3	3	3	2	AMP-binding	enzyme
DUF1212	PF06738.7	gi|257054013|ref|YP_003131846.1|	-	0.46	9.9	6.0	0.76	9.2	4.1	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1212)
ABC2_membrane_3	PF12698.2	gi|257054013|ref|YP_003131846.1|	-	0.65	8.9	7.7	0.97	8.3	5.3	1.4	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
DUF1129	PF06570.6	gi|257054013|ref|YP_003131846.1|	-	3.6	6.8	5.9	4.6	6.4	3.4	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1129)
Aldo_ket_red	PF00248.16	gi|257054014|ref|YP_003131847.1|	-	4.3e-59	199.6	0.0	5.1e-59	199.4	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
Trp_halogenase	PF04820.9	gi|257054015|ref|YP_003131848.1|	-	1.4e-14	53.6	2.1	6.3e-10	38.2	0.0	2.3	1	1	1	2	2	2	2	Tryptophan	halogenase
DAO	PF01266.19	gi|257054015|ref|YP_003131848.1|	-	1.1e-13	50.8	4.4	3.1e-06	26.3	0.5	2.2	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_oxidored	PF12831.2	gi|257054015|ref|YP_003131848.1|	-	3.2e-12	46.2	6.7	1.6e-11	43.9	4.5	2.0	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.19	gi|257054015|ref|YP_003131848.1|	-	1.1e-10	40.9	6.3	1.2e-05	24.3	1.9	2.3	2	0	0	2	2	2	2	FAD	binding	domain
HI0933_like	PF03486.9	gi|257054015|ref|YP_003131848.1|	-	6.4e-08	31.4	0.3	7.2e-06	24.7	0.2	2.3	2	0	0	2	2	2	1	HI0933-like	protein
Lycopene_cycl	PF05834.7	gi|257054015|ref|YP_003131848.1|	-	1.2e-07	31.0	0.4	2.6e-07	29.9	0.3	1.5	1	1	0	1	1	1	1	Lycopene	cyclase	protein
GIDA	PF01134.17	gi|257054015|ref|YP_003131848.1|	-	1.4e-07	30.7	0.1	2.1e-07	30.1	0.1	1.3	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
FAD_binding_3	PF01494.14	gi|257054015|ref|YP_003131848.1|	-	1.7e-07	30.6	5.2	0.0002	20.5	0.8	2.6	2	1	0	2	2	2	2	FAD	binding	domain
Pyr_redox_2	PF07992.9	gi|257054015|ref|YP_003131848.1|	-	3.5e-07	30.3	1.3	1.6e-06	28.1	0.9	2.1	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.1	gi|257054015|ref|YP_003131848.1|	-	8.9e-05	22.4	0.2	0.00034	20.5	0.1	2.0	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_3	PF13738.1	gi|257054015|ref|YP_003131848.1|	-	0.00037	20.5	0.1	0.00067	19.7	0.1	1.4	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.12	gi|257054015|ref|YP_003131848.1|	-	0.00038	19.6	1.2	0.00081	18.5	0.1	2.0	2	0	0	2	2	2	1	Thi4	family
Pyr_redox	PF00070.22	gi|257054015|ref|YP_003131848.1|	-	0.0009	19.5	4.0	0.14	12.5	0.1	2.9	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.13	gi|257054015|ref|YP_003131848.1|	-	0.0086	15.7	0.0	0.019	14.6	0.0	1.6	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
GMC_oxred_N	PF00732.14	gi|257054015|ref|YP_003131848.1|	-	0.02	14.0	0.0	1.9	7.5	0.0	2.4	2	0	0	2	2	2	0	GMC	oxidoreductase
NAD_binding_10	PF13460.1	gi|257054015|ref|YP_003131848.1|	-	0.037	14.0	2.7	0.16	11.9	0.3	2.8	2	1	0	3	3	3	0	NADH(P)-binding
K_oxygenase	PF13434.1	gi|257054015|ref|YP_003131848.1|	-	0.12	11.2	0.1	4.6	6.0	0.0	2.1	2	0	0	2	2	2	0	L-lysine	6-monooxygenase	(NADPH-requiring)
polyprenyl_synt	PF00348.12	gi|257054017|ref|YP_003131850.1|	-	4.9e-41	140.2	0.2	1.9e-40	138.3	0.1	1.8	1	1	0	1	1	1	1	Polyprenyl	synthetase
DUF485	PF04341.7	gi|257054019|ref|YP_003131852.1|	-	0.069	12.8	0.1	0.069	12.8	0.1	2.1	2	1	1	3	3	3	0	Protein	of	unknown	function,	DUF485
DUF2721	PF11026.3	gi|257054020|ref|YP_003131853.1|	-	3.2	7.4	6.5	0.26	10.9	0.5	2.1	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2721)
PcrB	PF01884.12	gi|257054021|ref|YP_003131854.1|	-	3.1e-25	88.7	0.0	1.2e-24	86.8	0.0	1.7	1	1	0	1	1	1	1	PcrB	family
His_biosynth	PF00977.16	gi|257054021|ref|YP_003131854.1|	-	7.5e-05	22.0	0.1	0.00012	21.3	0.0	1.3	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
Y_phosphatase3C	PF13348.1	gi|257054021|ref|YP_003131854.1|	-	0.006	16.6	0.3	12	6.1	0.0	3.7	3	0	0	3	3	3	2	Tyrosine	phosphatase	family	C-terminal	region
NMO	PF03060.10	gi|257054021|ref|YP_003131854.1|	-	0.044	12.9	0.1	0.069	12.2	0.1	1.2	1	0	0	1	1	1	0	Nitronate	monooxygenase
DUF420	PF04238.7	gi|257054022|ref|YP_003131855.1|	-	4.2e-35	120.6	13.0	5.9e-35	120.1	9.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF420)
DUF2306	PF10067.4	gi|257054022|ref|YP_003131855.1|	-	0.0082	16.2	3.9	0.0082	16.2	2.7	2.9	1	1	2	3	3	3	1	Predicted	membrane	protein	(DUF2306)
Cytochrom_B561	PF03188.11	gi|257054022|ref|YP_003131855.1|	-	0.19	11.5	13.2	0.37	10.6	3.3	2.4	1	1	1	2	2	2	0	Eukaryotic	cytochrome	b561
Intg_mem_TP0381	PF09529.5	gi|257054022|ref|YP_003131855.1|	-	0.32	10.2	6.3	0.88	8.7	2.6	2.1	1	1	1	2	2	2	0	Integral	membrane	protein	(intg_mem_TP0381)
DUF1240	PF06836.7	gi|257054022|ref|YP_003131855.1|	-	0.47	10.6	4.4	0.59	10.3	0.4	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1240)
Orai-1	PF07856.7	gi|257054022|ref|YP_003131855.1|	-	0.77	9.3	4.4	8	5.9	0.5	2.3	2	0	0	2	2	2	0	Mediator	of	CRAC	channel	activity
DUF418	PF04235.7	gi|257054022|ref|YP_003131855.1|	-	1.1	8.8	12.7	0.22	11.1	5.7	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF418)
DUF3397	PF11877.3	gi|257054022|ref|YP_003131855.1|	-	3.1	7.8	9.5	21	5.1	6.1	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3397)
DsbD	PF02683.10	gi|257054023|ref|YP_003131856.1|	-	4.6e-12	45.9	14.6	6.6e-12	45.4	10.1	1.2	1	0	0	1	1	1	1	Cytochrome	C	biogenesis	protein	transmembrane	region
Redoxin	PF08534.5	gi|257054024|ref|YP_003131857.1|	-	3.7e-11	42.7	0.0	4.5e-11	42.4	0.0	1.1	1	0	0	1	1	1	1	Redoxin
AhpC-TSA	PF00578.16	gi|257054024|ref|YP_003131857.1|	-	8.1e-08	31.9	0.0	1e-07	31.6	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Thioredoxin_8	PF13905.1	gi|257054024|ref|YP_003131857.1|	-	1.1e-05	25.4	0.0	2e-05	24.6	0.0	1.4	1	1	0	1	1	1	1	Thioredoxin-like
Thioredoxin	PF00085.15	gi|257054024|ref|YP_003131857.1|	-	0.00043	19.9	0.0	0.0006	19.4	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.1	gi|257054024|ref|YP_003131857.1|	-	0.0016	18.5	0.0	0.0023	18.0	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin-like	domain
SCO1-SenC	PF02630.9	gi|257054025|ref|YP_003131858.1|	-	8.4e-13	48.3	0.0	1.2e-12	47.8	0.0	1.1	1	0	0	1	1	1	1	SCO1/SenC
DUF2613	PF11021.3	gi|257054025|ref|YP_003131858.1|	-	0.078	12.7	0.2	0.37	10.5	0.1	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2613)
NosL	PF05573.7	gi|257054026|ref|YP_003131859.1|	-	1.7e-33	115.4	0.5	4.7e-33	113.9	0.3	1.6	1	1	0	1	1	1	1	NosL
NosD	PF05048.8	gi|257054027|ref|YP_003131860.1|	-	9.4e-26	90.4	0.2	4e-24	85.0	0.1	2.1	1	1	1	2	2	2	2	Periplasmic	copper-binding	protein	(NosD)
Beta_helix	PF13229.1	gi|257054027|ref|YP_003131860.1|	-	6.7e-14	51.9	7.0	3.8e-11	42.9	2.9	2.3	1	1	1	2	2	2	2	Right	handed	beta	helix	region
NosL	PF05573.7	gi|257054027|ref|YP_003131860.1|	-	3.6e-09	36.4	0.0	7.3e-09	35.4	0.0	1.4	1	0	0	1	1	1	1	NosL
DUF1565	PF07602.6	gi|257054027|ref|YP_003131860.1|	-	3.1e-05	23.2	6.7	0.022	13.8	0.6	3.0	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF1565)
Pectate_lyase_3	PF12708.2	gi|257054027|ref|YP_003131860.1|	-	3.7e-05	23.9	2.3	6.8e-05	23.0	1.6	1.4	1	0	0	1	1	1	1	Pectate	lyase	superfamily	protein
ABC_tran	PF00005.22	gi|257054028|ref|YP_003131861.1|	-	3.3e-23	82.5	0.0	5.1e-23	81.8	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|257054028|ref|YP_003131861.1|	-	2.3e-17	63.9	0.0	2.1e-09	37.8	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|257054028|ref|YP_003131861.1|	-	3.3e-07	29.7	0.0	0.022	14.0	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_19	PF13245.1	gi|257054028|ref|YP_003131861.1|	-	2e-05	24.2	1.4	0.11	12.2	0.0	2.8	2	1	0	2	2	2	2	Part	of	AAA	domain
AAA_29	PF13555.1	gi|257054028|ref|YP_003131861.1|	-	3.3e-05	23.3	0.1	6.4e-05	22.4	0.1	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_13	PF13166.1	gi|257054028|ref|YP_003131861.1|	-	0.00014	20.5	0.0	0.22	9.9	0.0	2.0	2	0	0	2	2	2	2	AAA	domain
AAA_16	PF13191.1	gi|257054028|ref|YP_003131861.1|	-	0.00032	20.7	0.5	0.00081	19.4	0.3	1.8	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_23	PF13476.1	gi|257054028|ref|YP_003131861.1|	-	0.0022	18.3	0.0	0.0034	17.7	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
Hydrolase	PF00702.21	gi|257054028|ref|YP_003131861.1|	-	0.0023	18.3	0.2	0.004	17.5	0.1	1.3	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
AAA_10	PF12846.2	gi|257054028|ref|YP_003131861.1|	-	0.0031	16.9	0.1	0.62	9.4	0.0	2.2	2	0	0	2	2	2	2	AAA-like	domain
AAA_25	PF13481.1	gi|257054028|ref|YP_003131861.1|	-	0.01	15.2	1.2	0.031	13.6	0.0	2.1	2	1	0	2	2	2	0	AAA	domain
AAA_15	PF13175.1	gi|257054028|ref|YP_003131861.1|	-	0.012	14.6	0.0	1.6	7.7	0.0	2.0	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_33	PF13671.1	gi|257054028|ref|YP_003131861.1|	-	0.021	14.7	0.1	0.11	12.3	0.0	2.0	1	1	0	1	1	1	0	AAA	domain
DUF258	PF03193.11	gi|257054028|ref|YP_003131861.1|	-	0.076	12.2	0.0	0.11	11.6	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA_14	PF13173.1	gi|257054028|ref|YP_003131861.1|	-	0.11	12.3	0.0	1.8	8.4	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
ABC2_membrane_2	PF12679.2	gi|257054029|ref|YP_003131862.1|	-	3.5e-12	45.7	17.2	6.9e-12	44.8	11.9	1.4	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.2	gi|257054029|ref|YP_003131862.1|	-	8.7e-05	21.7	12.1	0.00012	21.3	8.4	1.1	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.2	gi|257054029|ref|YP_003131862.1|	-	0.00011	21.4	13.6	0.00013	21.1	9.4	1.1	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
Abhydrolase_6	PF12697.2	gi|257054030|ref|YP_003131863.1|	-	4.6e-30	105.2	4.6	5.6e-30	104.9	3.2	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_5	PF12695.2	gi|257054030|ref|YP_003131863.1|	-	1.1e-12	47.8	0.2	2.5e-11	43.5	0.1	2.1	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.15	gi|257054030|ref|YP_003131863.1|	-	1.4e-06	28.0	0.2	5e-06	26.2	0.1	1.9	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.3	gi|257054030|ref|YP_003131863.1|	-	3.9e-05	23.4	0.0	8e-05	22.4	0.0	1.5	1	0	0	1	1	1	1	Putative	lysophospholipase
TMEM61	PF15105.1	gi|257054030|ref|YP_003131863.1|	-	0.069	12.6	0.0	0.1	12.1	0.0	1.3	1	0	0	1	1	1	0	TMEM61	protein	family
Polysacc_synt_C	PF14667.1	gi|257054032|ref|YP_003131865.1|	-	1.1e-22	80.3	16.0	1.1e-22	80.3	11.1	3.7	2	2	1	4	4	4	1	Polysaccharide	biosynthesis	C-terminal	domain
Polysacc_synt	PF01943.12	gi|257054032|ref|YP_003131865.1|	-	2.6e-21	76.0	32.9	3.1e-19	69.3	10.7	2.3	1	1	1	2	2	2	2	Polysaccharide	biosynthesis	protein
MVIN	PF03023.9	gi|257054032|ref|YP_003131865.1|	-	2.9e-12	45.7	11.6	2.9e-12	45.7	8.0	2.1	2	0	0	2	2	2	1	MviN-like	protein
Polysacc_synt_3	PF13440.1	gi|257054032|ref|YP_003131865.1|	-	1e-11	44.8	25.0	1e-11	44.8	17.3	2.1	2	0	0	2	2	2	1	Polysaccharide	biosynthesis	protein
Inositol_P	PF00459.20	gi|257054033|ref|YP_003131866.1|	-	3.7e-59	200.2	1.5	4.3e-59	200.0	1.1	1.0	1	0	0	1	1	1	1	Inositol	monophosphatase	family
UDG	PF03167.14	gi|257054035|ref|YP_003131868.1|	-	8.1e-07	28.6	0.0	9.8e-07	28.3	0.0	1.1	1	0	0	1	1	1	1	Uracil	DNA	glycosylase	superfamily
DUF3406	PF11886.3	gi|257054035|ref|YP_003131868.1|	-	0.016	14.0	0.1	0.022	13.5	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3406)
SseB	PF07179.7	gi|257054035|ref|YP_003131868.1|	-	0.12	12.1	0.1	3.4	7.4	0.0	2.3	2	0	0	2	2	2	0	SseB	protein	N-terminal	domain
SNF	PF00209.13	gi|257054036|ref|YP_003131869.1|	-	4.5e-55	187.0	26.4	1.3e-29	103.0	9.7	2.2	2	0	0	2	2	2	2	Sodium:neurotransmitter	symporter	family
SNF	PF00209.13	gi|257054038|ref|YP_003131871.1|	-	3.9e-75	253.2	23.4	2.6e-44	151.5	6.1	2.1	2	0	0	2	2	2	2	Sodium:neurotransmitter	symporter	family
adh_short	PF00106.20	gi|257054039|ref|YP_003131872.1|	-	3.3e-25	88.9	4.9	4.4e-25	88.5	3.4	1.2	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.1	gi|257054039|ref|YP_003131872.1|	-	3.3e-15	56.5	0.0	2e-14	53.9	0.0	1.8	1	1	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.5	gi|257054039|ref|YP_003131872.1|	-	4.4e-10	39.5	2.5	6.8e-10	38.9	1.8	1.3	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.16	gi|257054039|ref|YP_003131872.1|	-	1.2e-06	28.0	0.1	1.8e-06	27.5	0.1	1.4	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
NAD_binding_10	PF13460.1	gi|257054039|ref|YP_003131872.1|	-	3.5e-06	27.1	1.6	4.9e-06	26.6	1.1	1.2	1	0	0	1	1	1	1	NADH(P)-binding
NAD_binding_7	PF13241.1	gi|257054039|ref|YP_003131872.1|	-	0.056	13.6	0.0	0.16	12.2	0.0	1.8	2	1	0	2	2	2	0	Putative	NAD(P)-binding
NmrA	PF05368.8	gi|257054039|ref|YP_003131872.1|	-	0.058	12.6	0.1	0.099	11.8	0.1	1.3	1	0	0	1	1	1	0	NmrA-like	family
RmlD_sub_bind	PF04321.12	gi|257054039|ref|YP_003131872.1|	-	0.099	11.5	0.1	0.15	10.9	0.0	1.2	1	0	0	1	1	1	0	RmlD	substrate	binding	domain
3HCDH_N	PF02737.13	gi|257054039|ref|YP_003131872.1|	-	0.1	12.2	0.1	0.16	11.5	0.1	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
adh_short_C2	PF13561.1	gi|257054040|ref|YP_003131873.1|	-	3.9e-31	108.6	0.1	4.6e-31	108.4	0.1	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.20	gi|257054040|ref|YP_003131873.1|	-	4.4e-30	104.7	4.0	5.7e-30	104.4	2.8	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.5	gi|257054040|ref|YP_003131873.1|	-	6.3e-12	45.5	2.5	9.6e-12	44.9	1.7	1.2	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.16	gi|257054040|ref|YP_003131873.1|	-	0.025	14.0	0.4	0.039	13.3	0.3	1.4	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
ABC_tran	PF00005.22	gi|257054041|ref|YP_003131874.1|	-	1.2e-27	96.9	0.0	2.2e-27	96.0	0.0	1.5	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|257054041|ref|YP_003131874.1|	-	2.9e-15	57.0	0.0	3.1e-08	33.9	0.0	2.1	1	1	1	2	2	2	2	AAA	domain
AAA_23	PF13476.1	gi|257054041|ref|YP_003131874.1|	-	0.00021	21.6	0.3	0.00042	20.7	0.2	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.1	gi|257054041|ref|YP_003131874.1|	-	0.00032	20.3	0.1	0.0013	18.3	0.1	2.0	2	0	0	2	2	2	1	AAA	domain
AAA_29	PF13555.1	gi|257054041|ref|YP_003131874.1|	-	0.0013	18.2	0.1	0.0031	16.9	0.1	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_17	PF13207.1	gi|257054041|ref|YP_003131874.1|	-	0.0047	17.7	0.2	0.016	16.0	0.1	2.1	1	1	0	1	1	1	1	AAA	domain
SRP54	PF00448.17	gi|257054041|ref|YP_003131874.1|	-	0.011	15.2	0.2	0.032	13.6	0.1	1.7	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
AAA_19	PF13245.1	gi|257054041|ref|YP_003131874.1|	-	0.026	14.2	0.0	0.078	12.7	0.0	1.8	1	0	0	1	1	1	0	Part	of	AAA	domain
AAA_22	PF13401.1	gi|257054041|ref|YP_003131874.1|	-	0.05	13.7	0.1	0.12	12.5	0.1	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_24	PF13479.1	gi|257054041|ref|YP_003131874.1|	-	0.053	13.0	0.9	1.1	8.8	0.1	2.6	3	0	0	3	3	3	0	AAA	domain
AAA_33	PF13671.1	gi|257054041|ref|YP_003131874.1|	-	0.083	12.7	0.1	0.46	10.3	0.1	2.1	1	1	0	1	1	1	0	AAA	domain
AAA_16	PF13191.1	gi|257054041|ref|YP_003131874.1|	-	0.095	12.6	0.0	0.16	11.9	0.0	1.5	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_14	PF13173.1	gi|257054041|ref|YP_003131874.1|	-	0.13	12.1	0.0	0.22	11.4	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
ABC2_membrane_2	PF12679.2	gi|257054042|ref|YP_003131875.1|	-	5.8e-07	28.6	0.6	5.8e-07	28.6	0.4	3.0	2	1	0	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.2	gi|257054042|ref|YP_003131875.1|	-	0.00011	21.4	23.2	0.00011	21.4	16.1	2.6	2	1	1	3	3	3	1	ABC-2	family	transporter	protein
DUF2852	PF11014.3	gi|257054042|ref|YP_003131875.1|	-	0.37	10.7	1.6	13	5.8	0.0	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2852)
ABC2_membrane_3	PF12698.2	gi|257054043|ref|YP_003131876.1|	-	6e-23	81.4	1.4	7.8e-23	81.0	1.0	1.1	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.2	gi|257054043|ref|YP_003131876.1|	-	6.6e-13	48.1	6.9	1.3e-12	47.1	4.8	1.5	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.2	gi|257054043|ref|YP_003131876.1|	-	7.2e-10	38.4	0.0	4.1e-09	35.9	0.0	2.0	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.19	gi|257054043|ref|YP_003131876.1|	-	1e-07	31.3	6.0	1e-07	31.3	4.2	2.3	3	0	0	3	3	3	1	ABC-2	type	transporter
ABC2_membrane_5	PF13346.1	gi|257054043|ref|YP_003131876.1|	-	0.00079	18.7	3.9	0.00079	18.7	2.7	1.8	2	0	0	2	2	2	1	ABC-2	family	transporter	protein
Radical_SAM	PF04055.16	gi|257054044|ref|YP_003131877.1|	-	1.1e-15	58.2	0.0	2.5e-15	57.0	0.0	1.6	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_14	PF13394.1	gi|257054044|ref|YP_003131877.1|	-	0.00014	21.8	0.0	0.00065	19.7	0.0	2.1	2	1	1	3	3	3	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.1	gi|257054044|ref|YP_003131877.1|	-	0.00025	21.1	0.0	0.00043	20.4	0.0	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
SPASM	PF13186.1	gi|257054044|ref|YP_003131877.1|	-	0.0079	16.5	0.0	0.017	15.4	0.0	1.6	1	0	0	1	1	1	1	Iron-sulfur	cluster-binding	domain
adh_short	PF00106.20	gi|257054045|ref|YP_003131878.1|	-	3.2e-18	66.2	1.6	4.4e-18	65.7	0.3	1.8	2	0	0	2	2	2	1	short	chain	dehydrogenase
KR	PF08659.5	gi|257054045|ref|YP_003131878.1|	-	1.9e-07	30.9	0.1	4.2e-07	29.7	0.0	1.6	1	0	0	1	1	1	1	KR	domain
adh_short_C2	PF13561.1	gi|257054045|ref|YP_003131878.1|	-	3.7e-06	26.8	0.0	5.9e-06	26.2	0.0	1.2	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
Epimerase	PF01370.16	gi|257054045|ref|YP_003131878.1|	-	0.0002	20.8	0.0	0.00031	20.2	0.0	1.3	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
NAD_binding_10	PF13460.1	gi|257054045|ref|YP_003131878.1|	-	0.0054	16.7	0.7	0.012	15.6	0.5	1.7	1	1	0	1	1	1	1	NADH(P)-binding
RmlD_sub_bind	PF04321.12	gi|257054045|ref|YP_003131878.1|	-	0.0078	15.1	0.0	0.024	13.5	0.0	1.7	2	0	0	2	2	2	1	RmlD	substrate	binding	domain
BMFP	PF04380.8	gi|257054046|ref|YP_003131879.1|	-	0.018	15.1	0.1	0.019	15.0	0.1	1.1	1	0	0	1	1	1	0	Membrane	fusogenic	activity
DAO	PF01266.19	gi|257054047|ref|YP_003131880.1|	-	2.4e-27	95.7	0.0	3.1e-27	95.4	0.0	1.1	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Mqo	PF06039.10	gi|257054047|ref|YP_003131880.1|	-	6.1e-21	74.1	0.0	9.9e-20	70.1	0.0	2.0	1	1	0	1	1	1	1	Malate:quinone	oxidoreductase	(Mqo)
Pyr_redox_3	PF13738.1	gi|257054047|ref|YP_003131880.1|	-	0.001	19.1	0.0	0.18	11.8	0.0	2.2	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.1	gi|257054047|ref|YP_003131880.1|	-	0.0014	18.5	0.0	0.0033	17.4	0.0	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
HI0933_like	PF03486.9	gi|257054047|ref|YP_003131880.1|	-	0.0015	17.0	0.1	0.033	12.6	0.0	2.1	2	0	0	2	2	2	1	HI0933-like	protein
Pyr_redox_2	PF07992.9	gi|257054047|ref|YP_003131880.1|	-	0.019	14.8	0.0	5.1	6.9	0.0	2.3	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|257054047|ref|YP_003131880.1|	-	0.03	14.7	0.5	7.6	7.0	0.1	2.5	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Lycopene_cycl	PF05834.7	gi|257054047|ref|YP_003131880.1|	-	0.042	12.7	0.0	1.3	7.8	0.0	2.2	2	0	0	2	2	2	0	Lycopene	cyclase	protein
NAD_binding_9	PF13454.1	gi|257054047|ref|YP_003131880.1|	-	0.088	12.5	0.1	2.1	8.1	0.0	2.5	2	0	0	2	2	2	0	FAD-NAD(P)-binding
HTH_20	PF12840.2	gi|257054049|ref|YP_003131882.1|	-	0.0015	18.3	2.3	0.0042	16.8	0.0	2.5	2	1	0	2	2	2	1	Helix-turn-helix	domain
HTH_27	PF13463.1	gi|257054049|ref|YP_003131882.1|	-	0.0032	17.7	0.1	0.011	16.0	0.1	1.9	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.14	gi|257054049|ref|YP_003131882.1|	-	0.0091	15.6	0.0	0.032	13.9	0.0	2.0	2	1	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
Nop53	PF07767.6	gi|257054049|ref|YP_003131882.1|	-	0.014	14.4	3.3	0.015	14.2	2.3	1.1	1	0	0	1	1	1	0	Nop53	(60S	ribosomal	biogenesis)
Histone_HNS	PF00816.16	gi|257054049|ref|YP_003131882.1|	-	0.015	15.8	4.3	0.033	14.6	3.0	1.6	1	0	0	1	1	1	0	H-NS	histone	family
MarR_2	PF12802.2	gi|257054049|ref|YP_003131882.1|	-	0.028	14.0	0.7	0.096	12.3	0.1	2.0	2	0	0	2	2	2	0	MarR	family
DUF2894	PF11445.3	gi|257054049|ref|YP_003131882.1|	-	0.045	14.0	2.9	0.056	13.7	2.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2894)
HTH_7	PF02796.10	gi|257054049|ref|YP_003131882.1|	-	0.12	12.3	0.0	0.31	10.9	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	resolvase
Spore_III_AF	PF09581.5	gi|257054049|ref|YP_003131882.1|	-	0.12	12.2	0.3	0.18	11.6	0.2	1.2	1	0	0	1	1	1	0	Stage	III	sporulation	protein	AF	(Spore_III_AF)
DUF3772	PF12607.3	gi|257054049|ref|YP_003131882.1|	-	0.14	11.8	2.6	9	6.0	0.1	2.7	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3772)
cwf21	PF08312.7	gi|257054049|ref|YP_003131882.1|	-	0.19	11.5	0.3	0.19	11.5	0.2	2.9	2	1	0	2	2	2	0	cwf21	domain
HTH_Tnp_1	PF01527.15	gi|257054049|ref|YP_003131882.1|	-	0.23	11.4	2.2	0.43	10.5	0.0	2.4	2	1	0	2	2	2	0	Transposase
CorA	PF01544.13	gi|257054049|ref|YP_003131882.1|	-	0.39	9.6	4.6	0.69	8.8	3.2	1.3	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
Mnd1	PF03962.10	gi|257054049|ref|YP_003131882.1|	-	0.43	10.2	6.7	2.3	7.8	3.8	2.2	1	1	0	1	1	1	0	Mnd1	family
FANCI_S1-cap	PF14674.1	gi|257054049|ref|YP_003131882.1|	-	1.2	9.2	3.3	1.6	8.8	0.3	2.3	2	0	0	2	2	2	0	FANCI	solenoid	1	cap
DUF4164	PF13747.1	gi|257054049|ref|YP_003131882.1|	-	2.9	8.0	13.1	1	9.5	6.4	2.3	2	1	0	2	2	1	0	Domain	of	unknown	function	(DUF4164)
IncA	PF04156.9	gi|257054049|ref|YP_003131882.1|	-	9.6	5.7	8.8	15	5.1	6.1	1.3	1	0	0	1	1	1	0	IncA	protein
Mut7-C	PF01927.11	gi|257054050|ref|YP_003131883.1|	-	0.018	14.9	0.0	0.018	14.9	0.0	1.1	1	0	0	1	1	1	0	Mut7-C	RNAse	domain
HTH_39	PF14090.1	gi|257054050|ref|YP_003131883.1|	-	0.12	11.8	0.0	0.22	10.9	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF433	PF04255.9	gi|257054051|ref|YP_003131884.1|	-	7.3e-13	47.7	0.5	9.8e-13	47.3	0.3	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF433)
DUF4296	PF14129.1	gi|257054051|ref|YP_003131884.1|	-	0.00058	19.9	0.0	0.00076	19.5	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4296)
Glyco_trans_1_2	PF13524.1	gi|257054051|ref|YP_003131884.1|	-	0.098	12.9	0.0	0.13	12.5	0.0	1.3	1	0	0	1	1	1	0	Glycosyl	transferases	group	1
Mso1_Sec1_bdg	PF14475.1	gi|257054051|ref|YP_003131884.1|	-	0.1	12.0	0.1	0.18	11.2	0.0	1.4	1	0	0	1	1	1	0	Sec1-binding	region	of	Mso1
Aldo_ket_red	PF00248.16	gi|257054052|ref|YP_003131885.1|	-	2.5e-73	246.3	0.0	2.8e-73	246.2	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
Lipase_GDSL_2	PF13472.1	gi|257054052|ref|YP_003131885.1|	-	0.0046	17.0	0.6	0.094	12.8	0.4	2.5	1	1	1	2	2	2	1	GDSL-like	Lipase/Acylhydrolase	family
Cuticle_1	PF08140.6	gi|257054054|ref|YP_003131887.1|	-	0.01	15.6	0.7	0.62	9.9	0.0	2.7	2	0	0	2	2	2	0	Crustacean	cuticle	protein	repeat
Memo	PF01875.12	gi|257054055|ref|YP_003131888.1|	-	3.2e-63	213.1	0.0	3.7e-63	212.9	0.0	1.0	1	0	0	1	1	1	1	Memo-like	protein
Radical_SAM	PF04055.16	gi|257054056|ref|YP_003131889.1|	-	8e-21	74.9	0.0	1.3e-20	74.2	0.0	1.3	1	0	0	1	1	1	1	Radical	SAM	superfamily
UPF0004	PF00919.15	gi|257054056|ref|YP_003131889.1|	-	1.6e-19	69.5	0.0	2.8e-19	68.7	0.0	1.4	1	0	0	1	1	1	1	Uncharacterized	protein	family	UPF0004
TRAM	PF01938.15	gi|257054056|ref|YP_003131889.1|	-	7.9e-07	28.7	0.0	1.5e-06	27.9	0.0	1.5	1	0	0	1	1	1	1	TRAM	domain
LEA_2	PF03168.8	gi|257054057|ref|YP_003131890.1|	-	0.15	12.4	0.1	8.8	6.7	0.0	3.7	4	0	0	4	4	4	0	Late	embryogenesis	abundant	protein
Trypan_PARP	PF05887.6	gi|257054057|ref|YP_003131890.1|	-	1.8	8.3	9.9	0.43	10.3	3.5	2.1	2	0	0	2	2	2	0	Procyclic	acidic	repetitive	protein	(PARP)
DUF63	PF01889.12	gi|257054058|ref|YP_003131891.1|	-	2.1e-09	37.8	10.6	3.1e-09	37.2	7.4	1.2	1	0	0	1	1	1	1	Membrane	protein	of	unknown	function	DUF63
DUF1211	PF06736.6	gi|257054058|ref|YP_003131891.1|	-	0.2	11.8	0.0	0.2	11.8	0.0	2.5	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1211)
GpcrRhopsn4	PF10192.4	gi|257054058|ref|YP_003131891.1|	-	0.65	9.1	5.5	0.38	9.8	1.3	1.9	2	0	0	2	2	2	0	Rhodopsin-like	GPCR	transmembrane	domain
Usp	PF00582.21	gi|257054059|ref|YP_003131892.1|	-	1.1e-07	32.0	12.6	0.042	14.0	4.8	4.7	3	2	0	3	3	3	2	Universal	stress	protein	family
HPP	PF04982.8	gi|257054059|ref|YP_003131892.1|	-	1.1e-05	25.2	3.2	2e-05	24.4	2.2	1.4	1	0	0	1	1	1	1	HPP	family
TrkA_N	PF02254.13	gi|257054060|ref|YP_003131893.1|	-	5.3e-30	103.8	0.3	8.4e-30	103.1	0.2	1.3	1	0	0	1	1	1	1	TrkA-N	domain
Ion_trans_2	PF07885.11	gi|257054060|ref|YP_003131893.1|	-	2e-14	53.0	3.3	2e-14	53.0	2.3	2.2	2	0	0	2	2	2	1	Ion	channel
Saccharop_dh	PF03435.13	gi|257054060|ref|YP_003131893.1|	-	0.0096	14.9	0.1	0.032	13.2	0.0	1.8	1	1	1	2	2	2	1	Saccharopine	dehydrogenase
Ion_trans	PF00520.26	gi|257054060|ref|YP_003131893.1|	-	0.01	15.1	0.2	0.018	14.3	0.2	1.4	1	1	0	1	1	1	0	Ion	transport	protein
ADH_zinc_N	PF00107.21	gi|257054060|ref|YP_003131893.1|	-	0.048	13.2	0.1	0.28	10.7	0.0	2.3	1	1	1	2	2	2	0	Zinc-binding	dehydrogenase
bPH_6	PF10756.4	gi|257054060|ref|YP_003131893.1|	-	0.1	12.5	0.8	0.27	11.1	0.6	1.7	1	0	0	1	1	1	0	Bacterial	PH	domain
TrkA_C	PF02080.16	gi|257054061|ref|YP_003131894.1|	-	1.1e-13	50.5	0.2	1.2e-11	44.0	0.0	2.6	2	0	0	2	2	2	2	TrkA-C	domain
TrkA_C	PF02080.16	gi|257054062|ref|YP_003131895.1|	-	1.8e-06	27.4	1.4	4.2e-06	26.2	0.2	2.1	2	0	0	2	2	2	1	TrkA-C	domain
Asparaginase	PF00710.15	gi|257054064|ref|YP_003131897.1|	-	7.4e-89	297.6	0.5	8.7e-89	297.4	0.4	1.0	1	0	0	1	1	1	1	Asparaginase
HTH_5	PF01022.15	gi|257054066|ref|YP_003131899.1|	-	3.9e-17	61.6	0.0	9e-16	57.2	0.0	2.3	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.2	gi|257054066|ref|YP_003131899.1|	-	7.6e-15	54.4	0.1	1.3e-13	50.4	0.3	2.2	2	0	0	2	2	2	1	Helix-turn-helix	domain
TrmB	PF01978.14	gi|257054066|ref|YP_003131899.1|	-	4.7e-13	48.6	0.1	3e-06	26.8	0.1	2.2	2	0	0	2	2	2	2	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|257054066|ref|YP_003131899.1|	-	2e-11	43.4	0.9	2.6e-08	33.4	0.3	2.4	2	0	0	2	2	2	2	MarR	family
HTH_27	PF13463.1	gi|257054066|ref|YP_003131899.1|	-	5.8e-10	39.3	0.1	1.2e-06	28.6	0.0	2.6	2	1	0	2	2	2	2	Winged	helix	DNA-binding	domain
HTH_IclR	PF09339.5	gi|257054066|ref|YP_003131899.1|	-	1.1e-09	37.6	0.0	0.0013	18.2	0.0	3.1	2	1	0	2	2	2	2	IclR	helix-turn-helix	domain
HTH_24	PF13412.1	gi|257054066|ref|YP_003131899.1|	-	2.7e-09	36.2	1.8	6.1e-08	31.9	0.0	2.8	3	0	0	3	3	3	1	Winged	helix-turn-helix	DNA-binding
Rrf2	PF02082.15	gi|257054066|ref|YP_003131899.1|	-	3.4e-08	33.4	0.0	0.0033	17.5	0.0	2.3	2	0	0	2	2	2	2	Transcriptional	regulator
MarR	PF01047.17	gi|257054066|ref|YP_003131899.1|	-	3.7e-07	29.7	0.0	3.1e-06	26.7	0.0	2.1	2	0	0	2	2	2	1	MarR	family
HTH_Crp_2	PF13545.1	gi|257054066|ref|YP_003131899.1|	-	3.4e-06	26.7	0.0	0.00083	19.0	0.0	2.4	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
HTH_11	PF08279.7	gi|257054066|ref|YP_003131899.1|	-	1.6e-05	24.4	0.0	3.5e-05	23.3	0.0	1.5	1	0	0	1	1	1	1	HTH	domain
DUF2250	PF10007.4	gi|257054066|ref|YP_003131899.1|	-	2.9e-05	23.8	0.0	0.1	12.5	0.0	2.2	2	0	0	2	2	2	2	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
Fe_dep_repress	PF01325.14	gi|257054066|ref|YP_003131899.1|	-	3.9e-05	23.5	0.0	0.0049	16.7	0.0	2.4	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_CodY	PF08222.6	gi|257054066|ref|YP_003131899.1|	-	0.00017	20.8	0.0	0.00091	18.5	0.0	2.0	2	0	0	2	2	2	1	CodY	helix-turn-helix	domain
LexA_DNA_bind	PF01726.11	gi|257054066|ref|YP_003131899.1|	-	0.00048	19.6	0.0	0.022	14.3	0.0	2.5	2	0	0	2	2	2	1	LexA	DNA	binding	domain
HTH_23	PF13384.1	gi|257054066|ref|YP_003131899.1|	-	0.00063	19.3	0.0	0.0042	16.6	0.0	2.2	2	0	0	2	2	2	1	Homeodomain-like	domain
DUF4423	PF14394.1	gi|257054066|ref|YP_003131899.1|	-	0.00081	18.9	0.0	0.29	10.6	0.0	2.3	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4423)
FeoC	PF09012.5	gi|257054066|ref|YP_003131899.1|	-	0.0013	18.3	0.0	1.8	8.3	0.0	2.5	2	0	0	2	2	2	2	FeoC	like	transcriptional	regulator
GntR	PF00392.16	gi|257054066|ref|YP_003131899.1|	-	0.0015	17.9	0.0	0.2	11.0	0.0	2.4	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
PadR	PF03551.9	gi|257054066|ref|YP_003131899.1|	-	0.0017	18.1	0.4	0.011	15.5	0.1	2.4	3	1	0	3	3	1	1	Transcriptional	regulator	PadR-like	family
HxlR	PF01638.12	gi|257054066|ref|YP_003131899.1|	-	0.0067	16.0	0.1	0.075	12.6	0.0	2.4	3	0	0	3	3	3	1	HxlR-like	helix-turn-helix
DDRGK	PF09756.4	gi|257054066|ref|YP_003131899.1|	-	0.0088	15.4	0.0	0.015	14.7	0.0	1.3	1	0	0	1	1	1	1	DDRGK	domain
HTH_10	PF04967.7	gi|257054066|ref|YP_003131899.1|	-	0.012	15.1	0.0	0.037	13.6	0.0	1.8	2	0	0	2	2	2	0	HTH	DNA	binding	domain
HTH_28	PF13518.1	gi|257054066|ref|YP_003131899.1|	-	0.014	15.4	0.1	0.21	11.6	0.2	2.5	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_36	PF13730.1	gi|257054066|ref|YP_003131899.1|	-	0.021	14.9	0.0	0.039	14.0	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_29	PF13551.1	gi|257054066|ref|YP_003131899.1|	-	0.027	14.6	0.1	0.19	11.8	0.1	2.2	2	0	0	2	2	2	0	Winged	helix-turn	helix
HemN_C	PF06969.11	gi|257054066|ref|YP_003131899.1|	-	0.033	14.2	0.0	5.5	7.1	0.0	2.6	2	0	0	2	2	2	0	HemN	C-terminal	domain
FaeA	PF04703.7	gi|257054066|ref|YP_003131899.1|	-	0.039	14.1	0.0	0.072	13.2	0.0	1.4	1	0	0	1	1	1	0	FaeA-like	protein
DUF387	PF04079.11	gi|257054066|ref|YP_003131899.1|	-	0.041	13.2	0.0	0.4	10.0	0.0	2.4	2	1	1	3	3	3	0	Putative	transcriptional	regulators	(Ypuh-like)
DUF2513	PF10711.4	gi|257054066|ref|YP_003131899.1|	-	0.053	13.6	0.0	0.086	12.9	0.0	1.3	1	0	0	1	1	1	0	Hypothetical	protein	(DUF2513)
ArsR	PF09824.4	gi|257054066|ref|YP_003131899.1|	-	0.071	12.4	0.0	0.39	10.0	0.0	1.9	2	0	0	2	2	2	0	ArsR	transcriptional	regulator
PSRT	PF07636.6	gi|257054066|ref|YP_003131899.1|	-	0.079	12.4	0.8	0.16	11.4	0.5	1.5	1	0	0	1	1	1	0	PSRT
Sugarporin_N	PF11471.3	gi|257054067|ref|YP_003131900.1|	-	0.0038	16.8	5.1	0.055	13.1	1.4	2.5	2	0	0	2	2	2	1	Maltoporin	periplasmic	N-terminal	extension
DUF3450	PF11932.3	gi|257054067|ref|YP_003131900.1|	-	0.0072	15.6	0.9	0.0098	15.1	0.6	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3450)
IncA	PF04156.9	gi|257054067|ref|YP_003131900.1|	-	0.027	14.0	0.1	0.027	14.0	0.1	1.4	2	0	0	2	2	1	0	IncA	protein
Dynamitin	PF04912.9	gi|257054067|ref|YP_003131900.1|	-	0.028	13.2	0.0	0.039	12.7	0.0	1.2	1	0	0	1	1	1	0	Dynamitin
DUF4140	PF13600.1	gi|257054067|ref|YP_003131900.1|	-	0.033	14.6	6.5	0.039	14.4	1.2	2.2	1	1	1	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
Herpes_UL25	PF01499.11	gi|257054067|ref|YP_003131900.1|	-	0.034	12.4	0.3	0.043	12.1	0.2	1.1	1	0	0	1	1	1	0	Herpesvirus	UL25	family
DUF2802	PF10975.3	gi|257054067|ref|YP_003131900.1|	-	0.1	12.3	0.3	0.18	11.6	0.2	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2802)
Tropomyosin_1	PF12718.2	gi|257054067|ref|YP_003131900.1|	-	0.13	12.0	3.8	0.27	11.0	2.6	1.4	1	1	0	1	1	1	0	Tropomyosin	like
TMF_DNA_bd	PF12329.3	gi|257054067|ref|YP_003131900.1|	-	0.16	11.7	2.4	9.1	6.1	0.9	2.2	2	0	0	2	2	2	0	TATA	element	modulatory	factor	1	DNA	binding
MerR-DNA-bind	PF09278.6	gi|257054067|ref|YP_003131900.1|	-	0.27	11.6	2.7	14	6.1	0.3	2.3	2	0	0	2	2	2	0	MerR,	DNA	binding
PspB	PF06667.7	gi|257054067|ref|YP_003131900.1|	-	0.52	10.2	3.4	15	5.5	0.2	2.7	2	1	1	3	3	3	0	Phage	shock	protein	B
Fmp27_WPPW	PF10359.4	gi|257054067|ref|YP_003131900.1|	-	0.71	8.2	2.3	0.96	7.7	1.6	1.1	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
DUF2937	PF11157.3	gi|257054067|ref|YP_003131900.1|	-	1.3	8.2	4.6	5.3	6.3	0.1	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2937)
eRF1_2	PF03464.10	gi|257054069|ref|YP_003131902.1|	-	0.0064	16.8	0.0	0.0097	16.2	0.0	1.3	1	0	0	1	1	1	1	eRF1	domain	2
DUF3584	PF12128.3	gi|257054069|ref|YP_003131902.1|	-	0.0065	13.8	4.1	0.0088	13.4	2.9	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3584)
MCC-bdg_PDZ	PF10506.4	gi|257054069|ref|YP_003131902.1|	-	0.0077	16.0	5.3	1.1	9.1	0.5	2.5	2	0	0	2	2	2	2	PDZ	domain	of	MCC-2	bdg	protein	for	Usher	syndrome
Fmp27_WPPW	PF10359.4	gi|257054069|ref|YP_003131902.1|	-	0.014	13.8	5.1	0.02	13.3	3.5	1.2	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
ERM	PF00769.14	gi|257054069|ref|YP_003131902.1|	-	0.035	13.6	8.2	0.062	12.8	5.7	1.3	1	0	0	1	1	1	0	Ezrin/radixin/moesin	family
IncA	PF04156.9	gi|257054069|ref|YP_003131902.1|	-	0.039	13.5	9.7	0.069	12.7	6.8	1.3	1	0	0	1	1	1	0	IncA	protein
GAS	PF13851.1	gi|257054069|ref|YP_003131902.1|	-	0.078	12.1	2.0	0.13	11.4	1.4	1.3	1	0	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
Atg14	PF10186.4	gi|257054069|ref|YP_003131902.1|	-	0.083	11.8	5.0	0.12	11.3	3.5	1.1	1	0	0	1	1	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
BLOC1_2	PF10046.4	gi|257054069|ref|YP_003131902.1|	-	0.091	12.9	1.0	0.2	11.7	0.7	1.5	1	0	0	1	1	1	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
GST_C_3	PF14497.1	gi|257054069|ref|YP_003131902.1|	-	0.099	13.1	0.8	16	6.0	0.0	2.6	2	1	1	3	3	3	0	Glutathione	S-transferase,	C-terminal	domain
DUF4559	PF15112.1	gi|257054069|ref|YP_003131902.1|	-	0.1	11.7	0.5	0.16	11.0	0.3	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4559)
HOOK	PF05622.7	gi|257054069|ref|YP_003131902.1|	-	0.14	9.9	7.6	0.18	9.5	5.3	1.1	1	0	0	1	1	1	0	HOOK	protein
Syntaxin	PF00804.20	gi|257054069|ref|YP_003131902.1|	-	0.17	12.0	4.5	0.31	11.2	3.1	1.3	1	0	0	1	1	1	0	Syntaxin
ADIP	PF11559.3	gi|257054069|ref|YP_003131902.1|	-	0.25	11.2	5.6	0.5	10.2	3.9	1.4	1	0	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
Reo_sigmaC	PF04582.7	gi|257054069|ref|YP_003131902.1|	-	0.28	10.3	1.3	0.83	8.7	0.4	1.8	1	1	1	2	2	2	0	Reovirus	sigma	C	capsid	protein
bZIP_1	PF00170.16	gi|257054069|ref|YP_003131902.1|	-	0.28	11.1	9.2	1.6	8.7	0.5	2.4	1	1	1	2	2	2	0	bZIP	transcription	factor
OmpH	PF03938.9	gi|257054069|ref|YP_003131902.1|	-	0.29	11.0	3.1	0.18	11.7	0.8	1.5	2	0	0	2	2	2	0	Outer	membrane	protein	(OmpH-like)
APG6	PF04111.7	gi|257054069|ref|YP_003131902.1|	-	0.34	9.9	3.9	0.48	9.4	2.7	1.2	1	0	0	1	1	1	0	Autophagy	protein	Apg6
Mnd1	PF03962.10	gi|257054069|ref|YP_003131902.1|	-	0.38	10.3	4.1	0.61	9.7	2.8	1.3	1	0	0	1	1	1	0	Mnd1	family
ATG16	PF08614.6	gi|257054069|ref|YP_003131902.1|	-	0.73	9.6	10.8	0.085	12.6	4.7	1.5	2	0	0	2	2	1	0	Autophagy	protein	16	(ATG16)
Cep57_CLD_2	PF14197.1	gi|257054069|ref|YP_003131902.1|	-	0.74	9.8	22.2	0.047	13.6	11.5	1.9	2	0	0	2	2	2	0	Centrosome	localisation	domain	of	PPC89
DivIC	PF04977.10	gi|257054069|ref|YP_003131902.1|	-	1.5	8.3	9.4	0.95	8.9	1.9	2.3	1	1	1	2	2	2	0	Septum	formation	initiator
TMF_DNA_bd	PF12329.3	gi|257054069|ref|YP_003131902.1|	-	1.7	8.5	7.2	2.5	7.9	2.0	2.0	1	1	1	2	2	2	0	TATA	element	modulatory	factor	1	DNA	binding
DUF4200	PF13863.1	gi|257054069|ref|YP_003131902.1|	-	2	8.3	10.3	3.8	7.4	7.2	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4200)
DUF3552	PF12072.3	gi|257054069|ref|YP_003131902.1|	-	2.3	7.3	9.9	3.4	6.8	6.8	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3552)
WD40_alt	PF14077.1	gi|257054069|ref|YP_003131902.1|	-	2.4	7.8	8.8	1.7	8.3	0.8	2.8	2	1	0	2	2	2	0	Alternative	WD40	repeat	motif
DUF4140	PF13600.1	gi|257054069|ref|YP_003131902.1|	-	5.2	7.5	12.7	16	5.9	3.2	2.5	1	1	1	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
DUF904	PF06005.7	gi|257054069|ref|YP_003131902.1|	-	5.7	7.2	9.7	1.9e+02	2.4	6.8	2.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF904)
GreA_GreB_N	PF03449.10	gi|257054069|ref|YP_003131902.1|	-	6.2	6.9	12.5	6.2	6.9	6.9	2.3	2	1	0	2	2	2	0	Transcription	elongation	factor,	N-terminal
KfrA_N	PF11740.3	gi|257054069|ref|YP_003131902.1|	-	7	7.1	17.9	79	3.7	8.5	3.6	3	1	1	4	4	4	0	Plasmid	replication	region	DNA-binding	N-term
MraZ	PF02381.13	gi|257054070|ref|YP_003131903.1|	-	0.0011	18.6	0.0	0.0029	17.3	0.0	1.6	2	0	0	2	2	2	1	MraZ	protein
Antitoxin-MazE	PF04014.13	gi|257054070|ref|YP_003131903.1|	-	0.0025	17.5	0.0	0.006	16.2	0.0	1.7	1	1	0	1	1	1	1	Antidote-toxin	recognition	MazE
PIN	PF01850.16	gi|257054071|ref|YP_003131904.1|	-	1.3e-06	28.7	2.0	1.5e-06	28.5	1.4	1.1	1	0	0	1	1	1	1	PIN	domain
IspD	PF01128.14	gi|257054071|ref|YP_003131904.1|	-	0.11	12.0	0.2	0.15	11.5	0.1	1.2	1	0	0	1	1	1	0	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
AAA	PF00004.24	gi|257054072|ref|YP_003131905.1|	-	1.4e-11	44.7	0.0	4.4e-11	43.1	0.0	1.9	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.1	gi|257054072|ref|YP_003131905.1|	-	7.1e-08	32.6	0.1	3.8e-06	27.0	0.0	3.1	2	1	0	2	2	2	1	AAA	domain
RuvB_N	PF05496.7	gi|257054072|ref|YP_003131905.1|	-	1.3e-05	24.3	0.0	4.7e-05	22.5	0.0	1.8	2	0	0	2	2	2	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_16	PF13191.1	gi|257054072|ref|YP_003131905.1|	-	4.5e-05	23.5	0.2	0.039	13.9	0.0	3.4	1	1	2	3	3	3	1	AAA	ATPase	domain
AAA_17	PF13207.1	gi|257054072|ref|YP_003131905.1|	-	0.00022	22.0	0.7	0.0022	18.7	0.4	2.4	1	1	0	1	1	1	1	AAA	domain
Zeta_toxin	PF06414.7	gi|257054072|ref|YP_003131905.1|	-	0.00043	19.4	0.0	0.00089	18.4	0.0	1.5	1	0	0	1	1	1	1	Zeta	toxin
IstB_IS21	PF01695.12	gi|257054072|ref|YP_003131905.1|	-	0.00046	19.6	0.0	0.0015	17.9	0.0	1.8	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
AAA_5	PF07728.9	gi|257054072|ref|YP_003131905.1|	-	0.0014	18.3	0.0	0.0049	16.5	0.0	1.9	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA_14	PF13173.1	gi|257054072|ref|YP_003131905.1|	-	0.003	17.4	0.0	0.0081	16.0	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
Bac_DnaA	PF00308.13	gi|257054072|ref|YP_003131905.1|	-	0.0031	17.1	0.0	0.08	12.5	0.0	2.2	2	0	0	2	2	2	1	Bacterial	dnaA	protein
AAA_25	PF13481.1	gi|257054072|ref|YP_003131905.1|	-	0.011	15.1	0.2	0.7	9.2	0.0	2.8	1	1	1	2	2	2	0	AAA	domain
Rad17	PF03215.10	gi|257054072|ref|YP_003131905.1|	-	0.011	14.4	0.0	0.15	10.7	0.0	2.0	2	0	0	2	2	2	0	Rad17	cell	cycle	checkpoint	protein
AAA_24	PF13479.1	gi|257054072|ref|YP_003131905.1|	-	0.013	15.0	0.0	0.026	14.1	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_28	PF13521.1	gi|257054072|ref|YP_003131905.1|	-	0.013	15.4	0.0	0.05	13.5	0.0	2.0	1	0	0	1	1	1	0	AAA	domain
RNA_helicase	PF00910.17	gi|257054072|ref|YP_003131905.1|	-	0.02	15.0	0.0	0.065	13.4	0.0	1.8	2	0	0	2	2	2	0	RNA	helicase
DUF815	PF05673.8	gi|257054072|ref|YP_003131905.1|	-	0.024	13.5	0.0	0.053	12.4	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
AAA_33	PF13671.1	gi|257054072|ref|YP_003131905.1|	-	0.055	13.3	0.0	0.15	11.9	0.0	1.8	1	0	0	1	1	1	0	AAA	domain
AAA_18	PF13238.1	gi|257054072|ref|YP_003131905.1|	-	0.09	13.0	0.0	0.4	10.9	0.0	2.1	1	1	0	1	1	1	0	AAA	domain
DUF258	PF03193.11	gi|257054072|ref|YP_003131905.1|	-	0.1	11.7	0.0	0.22	10.6	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
Mg_chelatase	PF01078.16	gi|257054072|ref|YP_003131905.1|	-	0.12	11.5	0.0	0.2	10.8	0.0	1.4	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
NACHT	PF05729.7	gi|257054072|ref|YP_003131905.1|	-	0.13	11.8	0.0	0.61	9.7	0.0	1.9	2	0	0	2	2	2	0	NACHT	domain
DNA_pol3_delta	PF06144.8	gi|257054072|ref|YP_003131905.1|	-	0.16	11.4	0.0	0.28	10.6	0.0	1.3	1	0	0	1	1	1	0	DNA	polymerase	III,	delta	subunit
PQQ_2	PF13360.1	gi|257054073|ref|YP_003131906.1|	-	9.2e-49	166.0	10.3	1.7e-24	86.5	1.0	3.3	1	1	2	3	3	3	3	PQQ-like	domain
PQQ_3	PF13570.1	gi|257054073|ref|YP_003131906.1|	-	2.2e-41	138.9	28.2	4.1e-06	26.8	0.0	8.3	8	0	0	8	8	8	8	PQQ-like	domain
PQQ	PF01011.16	gi|257054073|ref|YP_003131906.1|	-	8.9e-27	91.2	6.2	0.00012	21.4	0.0	7.7	7	0	0	7	7	7	6	PQQ	enzyme	repeat
COX15-CtaA	PF02628.10	gi|257054074|ref|YP_003131907.1|	-	2.5e-23	82.3	14.1	2.5e-23	82.3	9.8	2.0	1	1	1	2	2	2	1	Cytochrome	oxidase	assembly	protein
DUF3382	PF11862.3	gi|257054074|ref|YP_003131907.1|	-	0.28	11.1	0.1	0.28	11.1	0.1	3.1	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF3382)
PTA_PTB	PF01515.14	gi|257054075|ref|YP_003131908.1|	-	6.4e-88	294.8	0.0	8.6e-88	294.4	0.0	1.2	1	0	0	1	1	1	1	Phosphate	acetyl/butaryl	transferase
Malic_M	PF03949.10	gi|257054075|ref|YP_003131908.1|	-	1.5e-65	221.3	0.9	1.5e-65	221.3	0.6	1.8	2	0	0	2	2	2	1	Malic	enzyme,	NAD	binding	domain
malic	PF00390.14	gi|257054075|ref|YP_003131908.1|	-	2.1e-27	95.8	0.0	4.6e-25	88.2	0.0	2.5	1	1	0	1	1	1	1	Malic	enzyme,	N-terminal	domain
RNase_H	PF00075.19	gi|257054076|ref|YP_003131909.1|	-	0.0032	17.8	0.0	0.0038	17.5	0.0	1.2	1	0	0	1	1	1	1	RNase	H
Oxidored_FMN	PF00724.15	gi|257054077|ref|YP_003131910.1|	-	2.2e-75	253.7	0.0	2.8e-75	253.4	0.0	1.1	1	0	0	1	1	1	1	NADH:flavin	oxidoreductase	/	NADH	oxidase	family
NanE	PF04131.9	gi|257054077|ref|YP_003131910.1|	-	0.02	13.8	0.0	0.03	13.2	0.0	1.3	1	0	0	1	1	1	0	Putative	N-acetylmannosamine-6-phosphate	epimerase
Usp	PF00582.21	gi|257054078|ref|YP_003131911.1|	-	2.4e-58	196.2	13.0	6.3e-30	104.2	1.2	2.0	2	0	0	2	2	2	2	Universal	stress	protein	family
MetJ	PF01340.15	gi|257054078|ref|YP_003131911.1|	-	0.069	12.8	0.2	0.28	10.9	0.0	1.9	2	0	0	2	2	2	0	Met	Apo-repressor,	MetJ
GHMP_kinases_N	PF00288.21	gi|257054079|ref|YP_003131912.1|	-	3.1e-15	55.9	0.2	7.5e-15	54.7	0.1	1.6	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
GalKase_gal_bdg	PF10509.4	gi|257054079|ref|YP_003131912.1|	-	8.4e-14	50.5	0.0	2.1e-13	49.3	0.0	1.7	1	0	0	1	1	1	1	Galactokinase	galactose-binding	signature
GHMP_kinases_C	PF08544.8	gi|257054079|ref|YP_003131912.1|	-	9.3e-13	48.1	0.8	2.8e-12	46.6	0.2	2.1	2	0	0	2	2	2	1	GHMP	kinases	C	terminal
Epimerase	PF01370.16	gi|257054080|ref|YP_003131913.1|	-	1.4e-42	145.8	0.0	1.6e-42	145.5	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
RmlD_sub_bind	PF04321.12	gi|257054080|ref|YP_003131913.1|	-	1.1e-15	57.2	0.0	1.4e-15	56.9	0.0	1.0	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.14	gi|257054080|ref|YP_003131913.1|	-	1.8e-12	46.5	0.0	2.5e-12	46.0	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.10	gi|257054080|ref|YP_003131913.1|	-	6.6e-11	41.6	0.0	5.4e-10	38.6	0.0	2.2	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_10	PF13460.1	gi|257054080|ref|YP_003131913.1|	-	1e-10	41.9	0.0	1.2e-10	41.6	0.0	1.2	1	0	0	1	1	1	1	NADH(P)-binding
NAD_binding_4	PF07993.7	gi|257054080|ref|YP_003131913.1|	-	1e-07	31.1	0.1	2.9e-05	23.1	0.0	2.2	1	1	1	2	2	2	2	Male	sterility	protein
TrkA_N	PF02254.13	gi|257054080|ref|YP_003131913.1|	-	4.8e-07	29.7	0.8	9.4e-07	28.8	0.5	1.5	1	0	0	1	1	1	1	TrkA-N	domain
adh_short	PF00106.20	gi|257054080|ref|YP_003131913.1|	-	2e-05	24.5	0.4	3.8e-05	23.6	0.3	1.5	1	0	0	1	1	1	1	short	chain	dehydrogenase
NmrA	PF05368.8	gi|257054080|ref|YP_003131913.1|	-	0.004	16.4	0.5	0.045	12.9	0.2	2.1	2	0	0	2	2	2	1	NmrA-like	family
Methyltransf_17	PF12692.2	gi|257054080|ref|YP_003131913.1|	-	0.042	13.5	0.0	0.082	12.5	0.0	1.4	1	0	0	1	1	1	0	S-adenosyl-L-methionine	methyltransferase
AAA_28	PF13521.1	gi|257054080|ref|YP_003131913.1|	-	0.073	13.0	0.0	0.16	11.9	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
HATPase_c	PF02518.21	gi|257054081|ref|YP_003131914.1|	-	5.4e-21	74.3	0.3	3.2e-20	71.8	0.0	2.3	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Response_reg	PF00072.19	gi|257054081|ref|YP_003131914.1|	-	3.4e-19	68.9	0.0	8.3e-19	67.6	0.0	1.6	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HATPase_c_2	PF13581.1	gi|257054081|ref|YP_003131914.1|	-	2.2e-09	37.1	0.4	2.6e-08	33.7	0.0	2.5	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
PAS_4	PF08448.5	gi|257054081|ref|YP_003131914.1|	-	7.6e-09	35.5	0.1	1.7e-08	34.4	0.1	1.6	1	0	0	1	1	1	1	PAS	fold
PAS	PF00989.19	gi|257054081|ref|YP_003131914.1|	-	1.6e-06	27.8	0.0	3.1e-06	26.9	0.0	1.5	1	0	0	1	1	1	1	PAS	fold
PAS_9	PF13426.1	gi|257054081|ref|YP_003131914.1|	-	3.7e-05	24.0	0.0	8.8e-05	22.8	0.0	1.7	1	0	0	1	1	1	1	PAS	domain
HATPase_c_5	PF14501.1	gi|257054081|ref|YP_003131914.1|	-	0.00016	21.3	0.0	0.0004	20.0	0.0	1.6	1	0	0	1	1	1	1	GHKL	domain
HisKA	PF00512.20	gi|257054081|ref|YP_003131914.1|	-	0.0019	18.1	0.0	0.0061	16.5	0.0	1.8	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_8	PF13188.1	gi|257054081|ref|YP_003131914.1|	-	0.0091	15.8	0.0	0.03	14.1	0.0	1.9	1	0	0	1	1	1	1	PAS	domain
HATPase_c_3	PF13589.1	gi|257054081|ref|YP_003131914.1|	-	0.026	14.1	0.2	0.079	12.6	0.0	1.9	2	0	0	2	2	2	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
SPOB_a	PF14689.1	gi|257054081|ref|YP_003131914.1|	-	0.2	11.2	1.2	0.69	9.5	0.9	2.0	1	1	0	1	1	1	0	Sensor_kinase_SpoOB-type,	alpha-helical	domain
DUF883	PF05957.8	gi|257054082|ref|YP_003131915.1|	-	0.0052	17.1	2.1	0.2	12.0	0.3	2.1	2	0	0	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF883)
Apolipoprotein	PF01442.13	gi|257054082|ref|YP_003131915.1|	-	0.013	15.0	0.9	4.1	6.8	0.1	1.9	1	1	0	1	1	1	0	Apolipoprotein	A1/A4/E	domain
CsbD	PF05532.7	gi|257054082|ref|YP_003131915.1|	-	0.052	13.2	4.7	0.2	11.3	0.6	2.5	2	1	1	3	3	3	0	CsbD-like
PilJ	PF13675.1	gi|257054082|ref|YP_003131915.1|	-	0.07	13.4	0.1	0.081	13.2	0.0	1.1	1	0	0	1	1	1	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
ApoLp-III	PF07464.6	gi|257054082|ref|YP_003131915.1|	-	0.13	12.2	1.5	0.33	10.9	0.2	1.8	1	1	1	2	2	2	0	Apolipophorin-III	precursor	(apoLp-III)
Cob_adeno_trans	PF01923.13	gi|257054083|ref|YP_003131916.1|	-	7.8e-57	191.6	0.0	8.7e-57	191.4	0.0	1.0	1	0	0	1	1	1	1	Cobalamin	adenosyltransferase
Response_reg	PF00072.19	gi|257054084|ref|YP_003131917.1|	-	1.9e-15	56.8	0.0	2.2e-15	56.6	0.0	1.1	1	0	0	1	1	1	1	Response	regulator	receiver	domain
OKR_DC_1_N	PF03709.10	gi|257054084|ref|YP_003131917.1|	-	0.00014	21.8	0.2	0.00034	20.6	0.1	1.6	1	1	1	2	2	2	2	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
FleQ	PF06490.6	gi|257054084|ref|YP_003131917.1|	-	0.017	15.3	0.0	0.018	15.2	0.0	1.1	1	0	0	1	1	1	0	Flagellar	regulatory	protein	FleQ
CM_2	PF01817.16	gi|257054085|ref|YP_003131918.1|	-	3.6e-17	62.2	5.0	4.2e-17	61.9	3.5	1.1	1	0	0	1	1	1	1	Chorismate	mutase	type	II
DUF4404	PF14357.1	gi|257054085|ref|YP_003131918.1|	-	0.2	12.1	1.1	0.26	11.7	0.8	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4404)
GHMP_kinases_N	PF00288.21	gi|257054086|ref|YP_003131919.1|	-	7.9e-09	35.4	5.2	7.9e-09	35.4	3.6	2.0	2	0	0	2	2	2	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.8	gi|257054086|ref|YP_003131919.1|	-	0.049	13.8	0.0	0.049	13.8	0.0	2.1	3	0	0	3	3	3	0	GHMP	kinases	C	terminal
Qn_am_d_aII	PF14930.1	gi|257054087|ref|YP_003131920.1|	-	0.081	12.8	0.1	3.2	7.7	0.0	2.1	2	0	0	2	2	2	0	Quinohemoprotein	amine	dehydrogenase,	alpha	subunit	domain	II
zf-C2H2_4	PF13894.1	gi|257054088|ref|YP_003131921.1|	-	0.0053	16.9	0.1	0.0068	16.6	0.0	1.2	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf-C2H2_3	PF13878.1	gi|257054088|ref|YP_003131921.1|	-	0.023	14.2	1.9	0.034	13.7	1.3	1.4	1	1	0	1	1	1	0	zinc-finger	of	acetyl-transferase	ESCO
zf-C2H2	PF00096.21	gi|257054088|ref|YP_003131921.1|	-	0.026	14.8	0.1	0.034	14.4	0.1	1.2	1	0	0	1	1	1	0	Zinc	finger,	C2H2	type
C1_1	PF00130.17	gi|257054088|ref|YP_003131921.1|	-	0.12	12.1	0.5	0.14	11.8	0.3	1.3	1	1	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)