#                                                                           --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                       accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------             -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
AAA	PF00004.29	gi|257051091|ref|YP_003128924.1|	-	3e-92	305.9	0.0	3.7e-46	156.8	0.0	2.3	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|257051091|ref|YP_003128924.1|	-	3.5e-27	93.9	4.0	8.9e-14	51.0	0.1	2.7	2	0	0	2	2	2	2	AAA+	lid	domain
CDC48_N	PF02359.18	gi|257051091|ref|YP_003128924.1|	-	7.1e-20	71.0	0.3	6.1e-19	68.0	0.2	2.6	3	0	0	3	3	2	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
AAA_16	PF13191.6	gi|257051091|ref|YP_003128924.1|	-	1.4e-15	58.1	0.7	4.1e-07	30.6	0.0	3.4	2	1	0	2	2	2	2	AAA	ATPase	domain
RuvB_N	PF05496.12	gi|257051091|ref|YP_003128924.1|	-	1.9e-15	57.0	0.0	3.3e-07	30.2	0.0	3.2	3	1	0	3	3	3	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_33	PF13671.6	gi|257051091|ref|YP_003128924.1|	-	2.7e-14	53.5	0.0	6.9e-06	26.3	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
AAA_2	PF07724.14	gi|257051091|ref|YP_003128924.1|	-	6.4e-12	45.9	0.0	2.4e-05	24.5	0.0	2.5	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
AAA_22	PF13401.6	gi|257051091|ref|YP_003128924.1|	-	8e-12	45.6	1.6	0.0015	18.8	0.1	4.0	2	2	0	2	2	2	2	AAA	domain
AAA_5	PF07728.14	gi|257051091|ref|YP_003128924.1|	-	1.1e-11	44.9	0.7	4.1e-05	23.6	0.1	3.8	2	2	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
AAA_18	PF13238.6	gi|257051091|ref|YP_003128924.1|	-	4.1e-09	37.1	0.0	0.0045	17.5	0.0	2.8	2	0	0	2	2	2	2	AAA	domain
TIP49	PF06068.13	gi|257051091|ref|YP_003128924.1|	-	1.3e-08	34.5	0.0	0.00039	19.7	0.0	2.4	2	0	0	2	2	2	2	TIP49	P-loop	domain
AAA_28	PF13521.6	gi|257051091|ref|YP_003128924.1|	-	1.1e-07	32.2	0.4	0.0089	16.3	0.0	3.5	3	1	0	3	3	3	2	AAA	domain
AAA_14	PF13173.6	gi|257051091|ref|YP_003128924.1|	-	2.4e-07	30.8	0.0	0.01	15.9	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
Mg_chelatase	PF01078.21	gi|257051091|ref|YP_003128924.1|	-	7.6e-07	28.7	0.1	0.044	13.2	0.1	2.5	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
RNA_helicase	PF00910.22	gi|257051091|ref|YP_003128924.1|	-	9e-07	29.3	0.0	0.056	13.8	0.0	2.4	2	0	0	2	2	2	2	RNA	helicase
IstB_IS21	PF01695.17	gi|257051091|ref|YP_003128924.1|	-	9.2e-07	28.8	0.0	0.039	13.7	0.0	2.4	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
AAA_3	PF07726.11	gi|257051091|ref|YP_003128924.1|	-	1.3e-06	28.3	0.0	0.025	14.4	0.0	2.4	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_24	PF13479.6	gi|257051091|ref|YP_003128924.1|	-	1.6e-06	28.0	0.0	0.053	13.2	0.0	2.7	2	1	1	3	3	2	2	AAA	domain
TsaE	PF02367.17	gi|257051091|ref|YP_003128924.1|	-	1.3e-05	25.2	0.0	0.23	11.5	0.0	2.4	2	0	0	2	2	2	2	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_7	PF12775.7	gi|257051091|ref|YP_003128924.1|	-	1.6e-05	24.5	0.0	0.09	12.3	0.0	2.6	3	0	0	3	3	3	2	P-loop	containing	dynein	motor	region
NACHT	PF05729.12	gi|257051091|ref|YP_003128924.1|	-	1.7e-05	24.8	0.9	0.85	9.5	0.0	3.8	4	0	0	4	4	4	1	NACHT	domain
Sigma54_activat	PF00158.26	gi|257051091|ref|YP_003128924.1|	-	2.2e-05	24.2	0.0	0.48	10.1	0.0	3.5	3	1	1	4	4	4	2	Sigma-54	interaction	domain
ABC_tran	PF00005.27	gi|257051091|ref|YP_003128924.1|	-	3.4e-05	24.4	0.0	0.28	11.7	0.0	2.5	2	0	0	2	2	2	2	ABC	transporter
Parvo_NS1	PF01057.17	gi|257051091|ref|YP_003128924.1|	-	5.7e-05	22.3	0.0	0.064	12.3	0.0	2.2	2	0	0	2	2	2	2	Parvovirus	non-structural	protein	NS1
AAA_11	PF13086.6	gi|257051091|ref|YP_003128924.1|	-	5.7e-05	23.0	0.0	0.28	11.0	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
AAA_25	PF13481.6	gi|257051091|ref|YP_003128924.1|	-	6.9e-05	22.5	8.9	0.12	11.9	0.9	4.3	2	2	0	3	3	3	2	AAA	domain
Zeta_toxin	PF06414.12	gi|257051091|ref|YP_003128924.1|	-	7.1e-05	22.2	0.0	0.46	9.7	0.0	2.8	2	1	0	2	2	2	2	Zeta	toxin
DUF815	PF05673.13	gi|257051091|ref|YP_003128924.1|	-	8.9e-05	21.8	0.0	0.13	11.4	0.0	2.3	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
ATPase	PF06745.13	gi|257051091|ref|YP_003128924.1|	-	0.00025	20.5	1.1	0.73	9.1	0.0	3.4	3	1	1	4	4	4	2	KaiC
PhoH	PF02562.16	gi|257051091|ref|YP_003128924.1|	-	0.00028	20.4	0.1	0.65	9.4	0.0	2.5	2	0	0	2	2	2	2	PhoH-like	protein
DUF2075	PF09848.9	gi|257051091|ref|YP_003128924.1|	-	0.00032	20.1	0.0	0.44	9.7	0.0	2.3	2	0	0	2	2	2	2	Uncharacterized	conserved	protein	(DUF2075)
ATPase_2	PF01637.18	gi|257051091|ref|YP_003128924.1|	-	0.00058	19.8	0.0	1.7	8.5	0.0	2.7	2	1	0	2	2	2	2	ATPase	domain	predominantly	from	Archaea
AAA_30	PF13604.6	gi|257051091|ref|YP_003128924.1|	-	0.0008	19.2	0.8	1	9.0	0.2	3.4	2	1	0	2	2	2	1	AAA	domain
Sigma54_activ_2	PF14532.6	gi|257051091|ref|YP_003128924.1|	-	0.00085	19.5	0.0	1	9.5	0.0	2.5	2	0	0	2	2	2	1	Sigma-54	interaction	domain
AAA_19	PF13245.6	gi|257051091|ref|YP_003128924.1|	-	0.00088	19.6	0.9	0.7	10.2	0.0	2.8	2	2	0	2	2	2	1	AAA	domain
AAA_17	PF13207.6	gi|257051091|ref|YP_003128924.1|	-	0.0015	19.0	0.0	1.5	9.3	0.0	2.8	2	1	0	2	2	2	1	AAA	domain
CDC48_2	PF02933.17	gi|257051091|ref|YP_003128924.1|	-	0.0019	18.0	2.6	0.0033	17.2	1.2	2.3	2	0	0	2	2	1	1	Cell	division	protein	48	(CDC48),	domain	2
NB-ARC	PF00931.22	gi|257051091|ref|YP_003128924.1|	-	0.0021	17.3	0.0	0.85	8.7	0.0	2.4	2	0	0	2	2	2	1	NB-ARC	domain
TniB	PF05621.11	gi|257051091|ref|YP_003128924.1|	-	0.0032	16.9	0.0	18	4.7	0.0	3.9	3	1	1	4	4	4	0	Bacterial	TniB	protein
DEAD	PF00270.29	gi|257051091|ref|YP_003128924.1|	-	0.018	14.8	1.5	3.9	7.2	0.0	3.7	2	2	1	4	4	4	0	DEAD/DEAH	box	helicase
AFG1_ATPase	PF03969.16	gi|257051091|ref|YP_003128924.1|	-	0.059	12.3	0.0	5.8	5.7	0.0	2.4	2	0	0	2	2	2	0	AFG1-like	ATPase
NTPase_1	PF03266.15	gi|257051091|ref|YP_003128924.1|	-	0.092	12.7	0.3	23	4.9	0.0	3.3	2	2	2	4	4	4	0	NTPase
MMR_HSR1	PF01926.23	gi|257051091|ref|YP_003128924.1|	-	0.095	12.8	0.0	25	5.0	0.0	3.2	3	1	0	3	3	2	0	50S	ribosome-binding	GTPase
Polyketide_cyc2	PF10604.9	gi|257051092|ref|YP_003128925.1|	-	5.7e-19	68.8	1.3	6.3e-19	68.7	1.3	1.0	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
COXG	PF06240.13	gi|257051092|ref|YP_003128925.1|	-	6.6e-05	22.7	0.0	0.00021	21.0	0.0	1.7	1	1	1	2	2	2	1	Carbon	monoxide	dehydrogenase	subunit	G	(CoxG)
Polyketide_cyc	PF03364.20	gi|257051092|ref|YP_003128925.1|	-	0.0001	22.5	0.3	0.00014	22.0	0.3	1.3	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
AHSA1	PF08327.11	gi|257051092|ref|YP_003128925.1|	-	0.00024	21.3	0.5	0.0009	19.5	0.5	1.8	1	1	0	1	1	1	1	Activator	of	Hsp90	ATPase	homolog	1-like	protein
DUF2505	PF10698.9	gi|257051092|ref|YP_003128925.1|	-	0.0093	16.1	1.8	0.12	12.5	1.8	2.2	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF2505)
FaeA	PF04703.12	gi|257051093|ref|YP_003128926.1|	-	0.0019	18.5	0.1	0.0024	18.2	0.1	1.2	1	0	0	1	1	1	1	FaeA-like	protein
Put_DNA-bind_N	PF06971.13	gi|257051093|ref|YP_003128926.1|	-	0.094	12.7	0.0	0.15	12.1	0.0	1.4	1	0	0	1	1	1	0	Putative	DNA-binding	protein	N-terminus
DUF3040	PF11239.8	gi|257051094|ref|YP_003128927.1|	-	0.0061	16.8	1.1	0.007	16.6	1.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3040)
FAD_binding_3	PF01494.19	gi|257051095|ref|YP_003128928.1|	-	6.3e-14	52.0	1.0	7e-08	32.1	0.0	3.0	3	0	0	3	3	3	3	FAD	binding	domain
DAO	PF01266.24	gi|257051095|ref|YP_003128928.1|	-	7.1e-09	35.7	0.7	0.0016	18.1	0.0	2.7	3	0	0	3	3	3	2	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.14	gi|257051095|ref|YP_003128928.1|	-	5.3e-07	29.2	0.1	2.6e-05	23.6	0.0	2.2	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Lycopene_cycl	PF05834.12	gi|257051095|ref|YP_003128928.1|	-	6.8e-07	28.7	2.6	0.015	14.4	1.4	2.6	2	1	0	2	2	2	2	Lycopene	cyclase	protein
HI0933_like	PF03486.14	gi|257051095|ref|YP_003128928.1|	-	1.2e-05	24.2	0.1	9.4e-05	21.3	0.0	1.9	2	0	0	2	2	2	1	HI0933-like	protein
NAD_binding_8	PF13450.6	gi|257051095|ref|YP_003128928.1|	-	2.9e-05	24.2	0.8	0.0001	22.5	0.2	2.3	2	1	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_2	PF00890.24	gi|257051095|ref|YP_003128928.1|	-	7.7e-05	21.9	0.9	0.0002	20.6	0.2	1.9	1	1	1	2	2	2	1	FAD	binding	domain
Pyr_redox_3	PF13738.6	gi|257051095|ref|YP_003128928.1|	-	0.0012	18.2	0.1	0.011	15.0	0.1	1.9	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Trp_halogenase	PF04820.14	gi|257051095|ref|YP_003128928.1|	-	0.0089	14.9	0.1	1.3	7.8	0.1	2.4	3	0	0	3	3	3	1	Tryptophan	halogenase
FAD_oxidored	PF12831.7	gi|257051095|ref|YP_003128928.1|	-	0.01	15.2	0.2	0.018	14.4	0.2	1.5	1	1	0	1	1	1	0	FAD	dependent	oxidoreductase
Ebola_NP	PF05505.12	gi|257051095|ref|YP_003128928.1|	-	0.034	12.5	0.3	0.045	12.1	0.3	1.1	1	0	0	1	1	1	0	Ebola	nucleoprotein
GIDA	PF01134.22	gi|257051095|ref|YP_003128928.1|	-	0.041	13.0	0.1	0.056	12.5	0.1	1.2	1	0	0	1	1	1	0	Glucose	inhibited	division	protein	A
Thi4	PF01946.17	gi|257051095|ref|YP_003128928.1|	-	0.07	12.4	0.2	0.22	10.8	0.0	1.8	2	0	0	2	2	2	0	Thi4	family
Pyr_redox	PF00070.27	gi|257051095|ref|YP_003128928.1|	-	0.12	12.9	0.7	13	6.4	0.0	2.4	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
PfkB	PF00294.24	gi|257051096|ref|YP_003128929.1|	-	1.4e-36	126.3	0.1	1.7e-36	126.1	0.1	1.0	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Cdc13_OB2	PF18691.1	gi|257051096|ref|YP_003128929.1|	-	0.09	12.8	0.0	0.14	12.2	0.0	1.2	1	0	0	1	1	1	0	Cell	division	control	protein	13,	OB2	domain
MutL_C	PF08676.11	gi|257051097|ref|YP_003128930.1|	-	8.9e-39	132.6	0.0	1.4e-38	132.0	0.0	1.3	1	0	0	1	1	1	1	MutL	C	terminal	dimerisation	domain
DNA_mis_repair	PF01119.19	gi|257051097|ref|YP_003128930.1|	-	4.8e-33	113.4	0.0	7.3e-33	112.8	0.0	1.3	1	0	0	1	1	1	1	DNA	mismatch	repair	protein,	C-terminal	domain
HATPase_c_3	PF13589.6	gi|257051097|ref|YP_003128930.1|	-	1.3e-12	47.7	0.1	2.6e-12	46.7	0.1	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c	PF02518.26	gi|257051097|ref|YP_003128930.1|	-	2.1e-05	25.0	0.1	4.4e-05	24.0	0.1	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
SOG2	PF10428.9	gi|257051097|ref|YP_003128930.1|	-	1.3	8.1	7.0	1.7	7.8	7.0	1.2	1	0	0	1	1	1	0	RAM	signalling	pathway	protein
DUF1405	PF07187.11	gi|257051098|ref|YP_003128931.1|	-	2.3e-48	164.2	11.3	2.8e-48	163.9	11.3	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1405)
Iron_permease	PF04120.12	gi|257051098|ref|YP_003128931.1|	-	0.21	11.3	0.3	0.46	10.3	0.3	1.5	1	0	0	1	1	1	0	Low	affinity	iron	permease
ABC_tran_CTD	PF16326.5	gi|257051099|ref|YP_003128932.1|	-	3.2e-07	30.5	0.6	0.0013	18.9	0.6	3.0	2	1	1	3	3	3	1	ABC	transporter	C-terminal	domain
NPV_P10	PF05531.12	gi|257051099|ref|YP_003128932.1|	-	3e-06	27.6	1.9	0.00028	21.3	0.2	2.4	1	1	1	2	2	2	1	Nucleopolyhedrovirus	P10	protein
BLOC1_2	PF10046.9	gi|257051099|ref|YP_003128932.1|	-	4.9e-06	26.8	3.1	0.00011	22.4	0.1	3.0	1	1	2	3	3	3	1	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
SlyX	PF04102.12	gi|257051099|ref|YP_003128932.1|	-	0.00038	21.0	1.8	0.029	15.0	0.4	2.9	2	1	0	2	2	2	1	SlyX
MutS_III	PF05192.18	gi|257051099|ref|YP_003128932.1|	-	0.00067	19.9	0.9	0.00075	19.8	0.9	1.2	1	0	0	1	1	1	1	MutS	domain	III
Fmp27_WPPW	PF10359.9	gi|257051099|ref|YP_003128932.1|	-	0.0021	17.0	0.2	0.0026	16.7	0.2	1.1	1	0	0	1	1	1	1	RNA	pol	II	promoter	Fmp27	protein	domain
DUF4988	PF16378.5	gi|257051099|ref|YP_003128932.1|	-	0.0024	17.6	1.3	0.2	11.3	0.1	2.9	2	1	1	3	3	3	1	Domain	of	unknown	function
DUF1664	PF07889.12	gi|257051099|ref|YP_003128932.1|	-	0.0025	17.9	1.4	0.0031	17.5	0.5	1.5	2	0	0	2	2	1	1	Protein	of	unknown	function	(DUF1664)
SKA1	PF07160.12	gi|257051099|ref|YP_003128932.1|	-	0.0026	17.6	0.1	0.004	17.0	0.1	1.2	1	0	0	1	1	1	1	Spindle	and	kinetochore-associated	protein	1
Tropomyosin	PF00261.20	gi|257051099|ref|YP_003128932.1|	-	0.0031	16.9	2.9	0.0051	16.2	2.9	1.5	1	1	0	1	1	1	1	Tropomyosin
XhlA	PF10779.9	gi|257051099|ref|YP_003128932.1|	-	0.0036	17.5	4.3	1.9	8.8	0.1	3.3	2	1	1	3	3	3	1	Haemolysin	XhlA
Spectrin	PF00435.21	gi|257051099|ref|YP_003128932.1|	-	0.0038	17.7	0.3	0.12	12.8	0.0	2.2	1	1	0	2	2	2	1	Spectrin	repeat
Sugarporin_N	PF11471.8	gi|257051099|ref|YP_003128932.1|	-	0.0039	17.1	3.9	17	5.5	0.0	3.5	3	0	0	3	3	3	0	Maltoporin	periplasmic	N-terminal	extension
Matrilin_ccoil	PF10393.9	gi|257051099|ref|YP_003128932.1|	-	0.005	16.7	1.2	1	9.3	0.0	3.3	3	0	0	3	3	3	1	Trimeric	coiled-coil	oligomerisation	domain	of	matrilin
CLZ	PF16526.5	gi|257051099|ref|YP_003128932.1|	-	0.0053	17.1	3.7	0.47	10.8	0.0	3.1	2	1	1	3	3	3	1	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
DUF3450	PF11932.8	gi|257051099|ref|YP_003128932.1|	-	0.0054	16.1	1.4	0.0068	15.7	1.0	1.4	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF3450)
RPW8	PF05659.11	gi|257051099|ref|YP_003128932.1|	-	0.0067	16.1	0.1	0.014	15.1	0.0	1.6	2	0	0	2	2	1	1	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
PspA_IM30	PF04012.12	gi|257051099|ref|YP_003128932.1|	-	0.0076	15.8	0.2	0.014	15.0	0.2	1.5	1	0	0	1	1	1	1	PspA/IM30	family
Hemagglutinin	PF00509.18	gi|257051099|ref|YP_003128932.1|	-	0.008	14.6	0.1	0.011	14.1	0.1	1.1	1	0	0	1	1	1	1	Haemagglutinin
YlqD	PF11068.8	gi|257051099|ref|YP_003128932.1|	-	0.0085	16.5	0.0	0.014	15.7	0.0	1.3	1	0	0	1	1	1	1	YlqD	protein
TRAF_BIRC3_bd	PF16673.5	gi|257051099|ref|YP_003128932.1|	-	0.011	15.5	3.0	0.027	14.3	0.9	2.1	2	0	0	2	2	2	0	TNF	receptor-associated	factor	BIRC3	binding	domain
DUF3552	PF12072.8	gi|257051099|ref|YP_003128932.1|	-	0.012	15.1	0.4	0.012	15.1	0.4	1.4	2	0	0	2	2	1	0	Domain	of	unknown	function	(DUF3552)
Dynactin_p22	PF07426.11	gi|257051099|ref|YP_003128932.1|	-	0.014	15.3	1.5	0.68	9.8	0.7	2.4	2	1	0	2	2	2	0	Dynactin	subunit	p22
Prefoldin_2	PF01920.20	gi|257051099|ref|YP_003128932.1|	-	0.015	15.2	1.9	1.3	9.0	0.3	2.7	2	1	1	3	3	2	0	Prefoldin	subunit
PCRF	PF03462.18	gi|257051099|ref|YP_003128932.1|	-	0.016	15.1	0.2	0.026	14.4	0.2	1.3	1	0	0	1	1	1	0	PCRF	domain
ISG65-75	PF11727.8	gi|257051099|ref|YP_003128932.1|	-	0.017	14.4	0.2	0.023	13.9	0.2	1.2	1	0	0	1	1	1	0	Invariant	surface	glycoprotein
FlaC_arch	PF05377.11	gi|257051099|ref|YP_003128932.1|	-	0.02	15.2	2.0	0.39	11.1	0.2	3.1	2	1	1	3	3	3	0	Flagella	accessory	protein	C	(FlaC)
Tropomyosin_1	PF12718.7	gi|257051099|ref|YP_003128932.1|	-	0.023	14.9	3.7	0.056	13.6	3.6	1.7	1	1	0	1	1	1	0	Tropomyosin	like
Syntaxin-6_N	PF09177.11	gi|257051099|ref|YP_003128932.1|	-	0.027	15.0	2.0	0.052	14.1	1.1	2.1	1	1	1	2	2	2	0	Syntaxin	6,	N-terminal
Cluap1	PF10234.9	gi|257051099|ref|YP_003128932.1|	-	0.028	13.8	1.0	0.052	12.9	1.0	1.4	1	1	0	1	1	1	0	Clusterin-associated	protein-1
MscS_porin	PF12795.7	gi|257051099|ref|YP_003128932.1|	-	0.03	13.9	1.2	0.053	13.1	0.5	1.7	1	1	1	2	2	2	0	Mechanosensitive	ion	channel	porin	domain
DUF3584	PF12128.8	gi|257051099|ref|YP_003128932.1|	-	0.03	11.9	2.9	0.03	11.9	2.9	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
DUF16	PF01519.16	gi|257051099|ref|YP_003128932.1|	-	0.038	14.5	0.3	0.1	13.1	0.3	1.7	2	1	0	2	2	1	0	Protein	of	unknown	function	DUF16
Uso1_p115_C	PF04871.13	gi|257051099|ref|YP_003128932.1|	-	0.043	14.2	1.7	0.061	13.7	0.6	1.8	1	1	0	1	1	1	0	Uso1	/	p115	like	vesicle	tethering	protein,	C	terminal	region
DUF4407	PF14362.6	gi|257051099|ref|YP_003128932.1|	-	0.054	12.8	1.7	0.063	12.6	1.7	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
Cob_adeno_trans	PF01923.18	gi|257051099|ref|YP_003128932.1|	-	0.056	13.6	0.3	0.081	13.1	0.3	1.3	1	0	0	1	1	1	0	Cobalamin	adenosyltransferase
HsbA	PF12296.8	gi|257051099|ref|YP_003128932.1|	-	0.056	13.9	0.1	0.11	12.9	0.1	1.5	1	0	0	1	1	1	0	Hydrophobic	surface	binding	protein	A
Wtap	PF17098.5	gi|257051099|ref|YP_003128932.1|	-	0.058	13.3	1.2	4.5	7.2	0.1	2.3	1	1	1	2	2	2	0	WTAP/Mum2p	family
DUF3422	PF11902.8	gi|257051099|ref|YP_003128932.1|	-	0.061	12.4	0.6	0.18	10.9	0.6	1.9	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3422)
ADIP	PF11559.8	gi|257051099|ref|YP_003128932.1|	-	0.063	13.4	0.3	0.27	11.3	0.1	2.1	1	1	1	2	2	2	0	Afadin-	and	alpha	-actinin-Binding
Spc7	PF08317.11	gi|257051099|ref|YP_003128932.1|	-	0.067	12.1	0.8	0.088	11.7	0.2	1.5	2	0	0	2	2	1	0	Spc7	kinetochore	protein
HSBP1	PF06825.12	gi|257051099|ref|YP_003128932.1|	-	0.071	13.0	4.8	0.41	10.5	0.2	3.0	3	0	0	3	3	3	0	Heat	shock	factor	binding	protein	1
COG6	PF06419.11	gi|257051099|ref|YP_003128932.1|	-	0.09	11.0	0.0	0.1	10.8	0.0	1.1	1	0	0	1	1	1	0	Conserved	oligomeric	complex	COG6
Fib_alpha	PF08702.10	gi|257051099|ref|YP_003128932.1|	-	0.091	12.9	0.3	0.37	11.0	0.1	2.1	1	1	1	2	2	2	0	Fibrinogen	alpha/beta	chain	family
UPF0184	PF03670.13	gi|257051099|ref|YP_003128932.1|	-	0.1	13.0	2.3	4.6	7.7	0.3	2.9	1	1	1	2	2	2	0	Uncharacterised	protein	family	(UPF0184)
FH2	PF02181.23	gi|257051099|ref|YP_003128932.1|	-	0.11	11.6	0.1	0.18	10.9	0.1	1.3	1	0	0	1	1	1	0	Formin	Homology	2	Domain
DASH_Spc19	PF08287.11	gi|257051099|ref|YP_003128932.1|	-	0.12	12.3	1.7	0.55	10.1	0.7	2.1	1	1	1	2	2	2	0	Spc19
Snapin_Pallidin	PF14712.6	gi|257051099|ref|YP_003128932.1|	-	0.12	12.8	0.6	2	8.9	0.3	2.7	2	1	1	3	3	3	0	Snapin/Pallidin
DUF1515	PF07439.11	gi|257051099|ref|YP_003128932.1|	-	0.14	12.2	1.2	0.36	10.9	0.7	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1515)
CCDC53	PF10152.9	gi|257051099|ref|YP_003128932.1|	-	0.17	12.3	4.4	0.27	11.7	3.9	1.6	1	1	0	1	1	1	0	Subunit	CCDC53	of	WASH	complex
Baculo_PEP_C	PF04513.12	gi|257051099|ref|YP_003128932.1|	-	0.18	11.8	0.1	1.1	9.3	0.1	1.9	1	1	0	1	1	1	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DUF3818	PF12825.7	gi|257051099|ref|YP_003128932.1|	-	0.24	10.4	0.1	0.27	10.2	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	in	PX-proteins	(DUF3818)
Alanine_zipper	PF11839.8	gi|257051099|ref|YP_003128932.1|	-	0.33	11.3	4.0	0.95	9.9	2.7	2.3	1	1	1	2	2	2	0	Alanine-zipper,	major	outer	membrane	lipoprotein
bZIP_2	PF07716.15	gi|257051099|ref|YP_003128932.1|	-	0.35	11.0	3.4	17	5.6	0.3	3.1	3	0	0	3	3	3	0	Basic	region	leucine	zipper
MRF_C1	PF13887.6	gi|257051099|ref|YP_003128932.1|	-	0.5	9.6	2.8	6.5	6.0	0.2	3.2	3	1	0	3	3	3	0	Myelin	gene	regulatory	factor	-C-terminal	domain	1
DivIC	PF04977.15	gi|257051099|ref|YP_003128932.1|	-	0.54	10.1	4.0	4.1	7.2	0.0	2.5	2	1	1	3	3	2	0	Septum	formation	initiator
DUF5457	PF17540.2	gi|257051100|ref|YP_003128933.1|	-	0.15	12.1	0.0	0.23	11.6	0.0	1.2	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5457)
Band_7	PF01145.25	gi|257051101|ref|YP_003128934.1|	-	9.4	6.2	8.3	11	6.0	0.2	3.4	4	0	0	4	4	4	0	SPFH	domain	/	Band	7	family
T2SSF	PF00482.23	gi|257051104|ref|YP_003128937.1|	-	4.8e-05	23.3	0.9	0.00029	20.8	0.2	2.4	2	0	0	2	2	2	1	Type	II	secretion	system	(T2SS),	protein	F
T2SSE	PF00437.20	gi|257051105|ref|YP_003128938.1|	-	1.1e-36	126.4	0.1	1.7e-36	125.7	0.1	1.3	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_16	PF13191.6	gi|257051105|ref|YP_003128938.1|	-	0.002	18.5	0.1	0.0082	16.5	0.1	2.1	1	0	0	1	1	1	1	AAA	ATPase	domain
ABC_tran	PF00005.27	gi|257051105|ref|YP_003128938.1|	-	0.0021	18.6	0.0	0.004	17.7	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
cobW	PF02492.19	gi|257051105|ref|YP_003128938.1|	-	0.0022	17.6	0.1	0.004	16.8	0.1	1.4	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_29	PF13555.6	gi|257051105|ref|YP_003128938.1|	-	0.0032	17.2	0.2	0.0093	15.7	0.3	1.7	2	0	0	2	2	1	1	P-loop	containing	region	of	AAA	domain
FtsK_SpoIIIE	PF01580.18	gi|257051105|ref|YP_003128938.1|	-	0.0067	15.8	0.7	0.1	12.0	0.1	2.3	2	0	0	2	2	2	1	FtsK/SpoIIIE	family
TrwB_AAD_bind	PF10412.9	gi|257051105|ref|YP_003128938.1|	-	0.01	14.8	0.0	0.016	14.1	0.0	1.2	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_22	PF13401.6	gi|257051105|ref|YP_003128938.1|	-	0.018	15.3	0.1	0.19	12.0	0.1	2.6	2	1	0	2	2	2	0	AAA	domain
AAA_14	PF13173.6	gi|257051105|ref|YP_003128938.1|	-	0.023	14.7	0.0	0.048	13.7	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
Zeta_toxin	PF06414.12	gi|257051105|ref|YP_003128938.1|	-	0.026	13.8	0.3	0.057	12.7	0.0	1.6	2	0	0	2	2	2	0	Zeta	toxin
ATPase	PF06745.13	gi|257051105|ref|YP_003128938.1|	-	0.094	12.0	0.0	0.18	11.1	0.0	1.3	1	0	0	1	1	1	0	KaiC
RsgA_GTPase	PF03193.16	gi|257051105|ref|YP_003128938.1|	-	0.17	11.7	0.1	0.37	10.7	0.1	1.5	1	0	0	1	1	1	0	RsgA	GTPase
AAA_7	PF12775.7	gi|257051105|ref|YP_003128938.1|	-	0.19	11.2	0.0	0.34	10.4	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_23	PF13476.6	gi|257051105|ref|YP_003128938.1|	-	0.26	11.8	0.0	0.46	11.0	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
ThiS	PF02597.20	gi|257051106|ref|YP_003128939.1|	-	7.6e-16	58.5	0.1	8.5e-16	58.4	0.1	1.0	1	0	0	1	1	1	1	ThiS	family
MoaC	PF01967.21	gi|257051107|ref|YP_003128940.1|	-	6.8e-46	155.7	2.1	8.1e-46	155.5	2.1	1.0	1	0	0	1	1	1	1	MoaC	family
HTH_10	PF04967.12	gi|257051108|ref|YP_003128941.1|	-	1.5e-20	72.7	0.3	2.4e-20	72.1	0.3	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|257051108|ref|YP_003128941.1|	-	0.034	14.0	9.7	0.028	14.3	6.4	2.5	2	1	0	2	2	2	0	GAF	and	HTH_10	associated	domain
Rieske	PF00355.26	gi|257051110|ref|YP_003128943.1|	-	2e-12	46.9	0.0	3.2e-12	46.2	0.0	1.4	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Cytochrom_B_N_2	PF13631.6	gi|257051111|ref|YP_003128944.1|	-	5e-46	156.8	1.9	1.5e-45	155.3	0.1	2.6	3	0	0	3	3	3	1	Cytochrome	b(N-terminal)/b6/petB
Cytochrome_B	PF00033.19	gi|257051111|ref|YP_003128944.1|	-	1.2e-31	110.0	8.2	1.1e-29	103.7	8.2	2.4	1	1	0	1	1	1	1	Cytochrome	b/b6/petB
Cytochrom_B_C	PF00032.17	gi|257051111|ref|YP_003128944.1|	-	1.7e-07	31.5	0.9	5.6e-07	29.8	0.1	2.3	2	0	0	2	2	2	1	Cytochrome	b(C-terminal)/b6/petD
DUF4405	PF14358.6	gi|257051111|ref|YP_003128944.1|	-	0.00072	20.1	13.9	0.0037	17.8	9.4	3.6	2	1	0	2	2	2	1	Domain	of	unknown	function	(DUF4405)
SP_C-Propep	PF08999.10	gi|257051111|ref|YP_003128944.1|	-	0.028	14.2	0.0	0.68	9.8	0.0	2.5	2	0	0	2	2	2	0	Surfactant	protein	C,	N	terminal	propeptide
TetR_C_32	PF09209.11	gi|257051111|ref|YP_003128944.1|	-	0.099	12.6	0.0	0.24	11.4	0.0	1.6	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
Mntp	PF02659.15	gi|257051111|ref|YP_003128944.1|	-	0.11	12.3	0.0	0.11	12.3	0.0	2.8	5	0	0	5	5	5	0	Putative	manganese	efflux	pump
Ni_hydr_CYTB	PF01292.20	gi|257051111|ref|YP_003128944.1|	-	1.2	8.7	23.3	0.017	14.8	4.6	3.4	3	1	1	4	4	4	0	Prokaryotic	cytochrome	b561
Molybdopterin	PF00384.22	gi|257051113|ref|YP_003128946.1|	-	4.1e-91	306.1	0.0	6e-91	305.5	0.0	1.2	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.21	gi|257051113|ref|YP_003128946.1|	-	2.6e-21	75.7	0.0	5.5e-21	74.7	0.0	1.5	1	0	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
UCR_Fe-S_N	PF10399.9	gi|257051113|ref|YP_003128946.1|	-	0.00074	18.8	1.0	0.0015	17.9	1.0	1.4	1	0	0	1	1	1	1	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
TAT_signal	PF10518.9	gi|257051113|ref|YP_003128946.1|	-	0.0013	18.5	4.7	0.0024	17.6	4.7	1.4	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Molybdop_Fe4S4	PF04879.16	gi|257051113|ref|YP_003128946.1|	-	0.031	14.3	0.3	0.065	13.2	0.3	1.5	1	0	0	1	1	1	0	Molybdopterin	oxidoreductase	Fe4S4	domain
CDC48_N	PF02359.18	gi|257051113|ref|YP_003128946.1|	-	0.17	12.1	0.0	0.4	10.9	0.0	1.6	1	0	0	1	1	1	0	Cell	division	protein	48	(CDC48),	N-terminal	domain
Fer4_11	PF13247.6	gi|257051114|ref|YP_003128947.1|	-	3e-29	101.1	9.1	3e-29	101.1	9.1	1.8	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|257051114|ref|YP_003128947.1|	-	3.3e-10	39.9	17.0	4.6e-06	26.7	6.0	3.3	3	0	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|257051114|ref|YP_003128947.1|	-	2.2e-09	37.7	19.2	0.00019	21.9	8.5	3.5	2	1	1	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|257051114|ref|YP_003128947.1|	-	1.4e-06	28.3	20.9	0.0031	17.7	7.1	3.4	2	1	2	4	4	4	4	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|257051114|ref|YP_003128947.1|	-	4.7e-05	23.3	23.5	0.0059	16.6	0.9	4.2	5	0	0	5	5	5	3	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|257051114|ref|YP_003128947.1|	-	8e-05	22.5	26.6	0.0027	17.7	2.7	4.0	4	0	0	4	4	3	3	4Fe-4S	binding	domain
Fer4_15	PF13459.6	gi|257051114|ref|YP_003128947.1|	-	0.00018	22.2	6.1	0.15	12.8	0.1	3.6	3	0	0	3	3	3	2	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.6	gi|257051114|ref|YP_003128947.1|	-	0.00019	21.9	7.2	0.036	14.6	0.1	3.6	3	0	0	3	3	3	1	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_21	PF14697.6	gi|257051114|ref|YP_003128947.1|	-	0.0002	21.4	18.7	0.014	15.5	1.5	3.0	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|257051114|ref|YP_003128947.1|	-	0.00037	20.2	26.9	0.011	15.6	2.9	5.2	5	0	0	5	5	5	3	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|257051114|ref|YP_003128947.1|	-	0.00079	19.9	17.9	0.17	12.5	0.1	4.0	3	1	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|257051114|ref|YP_003128947.1|	-	0.0099	16.3	1.4	0.0099	16.3	1.4	4.4	4	1	0	4	4	4	2	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|257051114|ref|YP_003128947.1|	-	0.24	12.3	22.3	4	8.4	0.3	4.0	2	1	1	3	3	3	0	4Fe-4S	double	cluster	binding	domain
Fer4_3	PF12798.7	gi|257051114|ref|YP_003128947.1|	-	1.8	9.7	36.2	0.11	13.5	5.8	4.2	4	0	0	4	4	4	0	4Fe-4S	binding	domain
EB_dh	PF09459.10	gi|257051115|ref|YP_003128948.1|	-	9.7e-25	88.0	4.3	6.7e-15	55.7	0.6	2.1	1	1	1	2	2	2	2	Ethylbenzene	dehydrogenase
Nitrate_red_del	PF02613.15	gi|257051116|ref|YP_003128949.1|	-	1.2e-09	38.3	0.3	2.8e-09	37.1	0.3	1.8	1	1	0	1	1	1	1	Nitrate	reductase	delta	subunit
Pox_P21	PF05313.12	gi|257051117|ref|YP_003128950.1|	-	0.03	13.9	1.9	0.051	13.2	1.9	1.3	1	0	0	1	1	1	0	Poxvirus	P21	membrane	protein
HEAT_2	PF13646.6	gi|257051118|ref|YP_003128951.1|	-	3e-26	91.6	28.0	4.9e-14	52.5	3.8	3.2	1	1	2	3	3	3	3	HEAT	repeats
HEAT	PF02985.22	gi|257051118|ref|YP_003128951.1|	-	8.4e-13	47.4	11.3	0.0019	18.3	0.0	5.8	5	1	1	6	6	6	4	HEAT	repeat
Cnd1	PF12717.7	gi|257051118|ref|YP_003128951.1|	-	1.8e-06	28.1	0.0	0.00095	19.2	0.0	3.4	1	1	2	3	3	3	2	non-SMC	mitotic	condensation	complex	subunit	1
HEAT_EZ	PF13513.6	gi|257051118|ref|YP_003128951.1|	-	2.2e-06	28.1	13.2	0.023	15.2	0.0	4.7	4	2	1	5	5	5	2	HEAT-like	repeat
Adaptin_N	PF01602.20	gi|257051118|ref|YP_003128951.1|	-	5.4e-05	22.0	0.0	0.00013	20.7	0.0	1.5	2	0	0	2	2	2	1	Adaptin	N	terminal	region
HEAT_PBS	PF03130.16	gi|257051118|ref|YP_003128951.1|	-	0.017	15.7	15.3	0.12	13.1	0.1	5.3	5	1	0	5	5	5	0	PBS	lyase	HEAT-like	repeat
Vac14_Fab1_bd	PF12755.7	gi|257051118|ref|YP_003128951.1|	-	0.033	14.8	0.0	24	5.6	0.0	3.4	2	2	1	3	3	3	0	Vacuolar	14	Fab1-binding	region
PHY	PF00360.20	gi|257051118|ref|YP_003128951.1|	-	0.067	12.5	0.1	0.11	11.8	0.1	1.3	1	0	0	1	1	1	0	Phytochrome	region
Radical_SAM	PF04055.21	gi|257051120|ref|YP_003128953.1|	-	1.5e-19	71.0	0.0	2.2e-19	70.4	0.0	1.3	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|257051120|ref|YP_003128953.1|	-	8e-07	29.4	0.0	1.3e-06	28.8	0.0	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.6	gi|257051120|ref|YP_003128953.1|	-	2e-05	24.7	0.0	3.2e-05	24.0	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
SPASM	PF13186.6	gi|257051120|ref|YP_003128953.1|	-	0.0021	18.5	0.0	0.0047	17.4	0.0	1.6	1	0	0	1	1	1	1	Iron-sulfur	cluster-binding	domain
DUF2249	PF10006.9	gi|257051121|ref|YP_003128954.1|	-	5.1e-24	83.9	0.4	6.4e-24	83.6	0.4	1.1	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2249)
TusA	PF01206.17	gi|257051121|ref|YP_003128954.1|	-	0.012	15.4	0.0	0.019	14.8	0.0	1.3	1	0	0	1	1	1	0	Sulfurtransferase	TusA
MOSC_N	PF03476.16	gi|257051122|ref|YP_003128955.1|	-	1.8e-16	60.1	0.2	6.5e-16	58.3	0.2	1.9	1	1	0	1	1	1	1	MOSC	N-terminal	beta	barrel	domain
MOSC	PF03473.17	gi|257051122|ref|YP_003128955.1|	-	4.1e-08	33.3	0.0	7.7e-08	32.4	0.0	1.4	1	0	0	1	1	1	1	MOSC	domain
DUF2249	PF10006.9	gi|257051123|ref|YP_003128956.1|	-	1.6e-19	69.6	0.1	1.9e-19	69.2	0.1	1.1	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2249)
Cu-oxidase_3	PF07732.15	gi|257051124|ref|YP_003128957.1|	-	2e-13	50.4	0.2	1e-12	48.1	0.0	2.0	2	0	0	2	2	2	1	Multicopper	oxidase
Cu-oxidase_2	PF07731.14	gi|257051124|ref|YP_003128957.1|	-	2.4e-07	30.5	5.5	5.3e-05	23.0	0.0	3.9	3	1	1	4	4	4	1	Multicopper	oxidase
Copper-bind	PF00127.20	gi|257051124|ref|YP_003128957.1|	-	6.6e-06	26.5	0.8	5.7e-05	23.5	0.3	2.5	2	1	0	2	2	2	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.6	gi|257051124|ref|YP_003128957.1|	-	0.011	15.8	0.0	0.034	14.3	0.0	1.7	1	1	0	1	1	1	0	Cupredoxin-like	domain
Cu-oxidase	PF00394.22	gi|257051124|ref|YP_003128957.1|	-	0.05	13.7	0.1	0.49	10.5	0.0	2.4	3	0	0	3	3	3	0	Multicopper	oxidase
TAT_signal	PF10518.9	gi|257051124|ref|YP_003128957.1|	-	0.26	11.2	7.8	0.49	10.3	7.8	1.4	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
MoeA_N	PF03453.17	gi|257051125|ref|YP_003128958.1|	-	3.5e-39	134.1	6.2	3.5e-39	134.1	6.2	1.8	2	0	0	2	2	2	1	MoeA	N-terminal	region	(domain	I	and	II)
MoCF_biosynth	PF00994.24	gi|257051125|ref|YP_003128958.1|	-	3e-25	88.6	0.1	5.6e-25	87.7	0.1	1.5	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
PBP_like	PF12727.7	gi|257051125|ref|YP_003128958.1|	-	1.1e-13	50.8	0.4	4.4e-13	48.8	0.4	2.0	1	1	0	1	1	1	1	PBP	superfamily	domain
MoeA_C	PF03454.15	gi|257051125|ref|YP_003128958.1|	-	4.4e-13	49.2	1.3	2.1e-12	47.1	0.0	2.9	4	0	0	4	4	4	1	MoeA	C-terminal	region	(domain	IV)
SBP_bac_11	PF13531.6	gi|257051125|ref|YP_003128958.1|	-	1.3e-05	25.1	0.8	3.7e-05	23.6	0.7	1.8	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
LysR_substrate	PF03466.20	gi|257051125|ref|YP_003128958.1|	-	0.0012	18.3	3.7	0.48	9.7	0.2	2.4	1	1	1	2	2	2	2	LysR	substrate	binding	domain
Transketolase_C	PF02780.20	gi|257051125|ref|YP_003128958.1|	-	0.083	12.8	0.1	0.37	10.7	0.1	2.1	1	0	0	1	1	1	0	Transketolase,	C-terminal	domain
MoeA_N	PF03453.17	gi|257051126|ref|YP_003128959.1|	-	4.6e-35	120.7	8.5	4.6e-35	120.7	8.5	1.7	2	0	0	2	2	2	1	MoeA	N-terminal	region	(domain	I	and	II)
MoCF_biosynth	PF00994.24	gi|257051126|ref|YP_003128959.1|	-	5.8e-26	90.9	0.1	1e-25	90.1	0.1	1.4	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
MoeA_C	PF03454.15	gi|257051126|ref|YP_003128959.1|	-	1.3e-16	60.5	1.0	1.2e-15	57.4	0.6	2.8	2	0	0	2	2	2	1	MoeA	C-terminal	region	(domain	IV)
PASTA	PF03793.19	gi|257051126|ref|YP_003128959.1|	-	0.003	17.4	2.0	0.02	14.7	0.3	2.5	2	0	0	2	2	2	1	PASTA	domain
NTP_transf_3	PF12804.7	gi|257051127|ref|YP_003128960.1|	-	2.1e-29	102.9	0.7	2.8e-29	102.5	0.7	1.1	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
CofC	PF01983.16	gi|257051127|ref|YP_003128960.1|	-	0.051	12.8	0.0	0.06	12.5	0.0	1.2	1	0	0	1	1	1	0	Guanylyl	transferase	CofC	like
MoaE	PF02391.17	gi|257051128|ref|YP_003128961.1|	-	1.4e-26	93.0	0.1	2.4e-26	92.2	0.1	1.4	1	0	0	1	1	1	1	MoaE	protein
MobB	PF03205.14	gi|257051128|ref|YP_003128961.1|	-	1.1e-20	73.9	0.0	2.1e-20	73.0	0.0	1.6	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_18	PF13238.6	gi|257051128|ref|YP_003128961.1|	-	8.7e-05	23.1	0.1	0.0034	17.9	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
MeaB	PF03308.16	gi|257051128|ref|YP_003128961.1|	-	0.00023	20.2	0.1	0.0004	19.5	0.1	1.4	1	0	0	1	1	1	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_16	PF13191.6	gi|257051128|ref|YP_003128961.1|	-	0.00036	21.0	0.3	0.034	14.5	0.0	2.4	2	1	0	2	2	2	1	AAA	ATPase	domain
MMR_HSR1	PF01926.23	gi|257051128|ref|YP_003128961.1|	-	0.0012	19.0	0.3	0.0021	18.1	0.1	1.8	2	1	0	2	2	1	1	50S	ribosome-binding	GTPase
PRK	PF00485.18	gi|257051128|ref|YP_003128961.1|	-	0.0015	18.4	0.0	0.0022	17.8	0.0	1.3	1	0	0	1	1	1	1	Phosphoribulokinase	/	Uridine	kinase	family
DUF463	PF04317.12	gi|257051128|ref|YP_003128961.1|	-	0.0034	16.4	0.0	0.0056	15.7	0.0	1.3	1	0	0	1	1	1	1	YcjX-like	family,	DUF463
GTP_EFTU	PF00009.27	gi|257051128|ref|YP_003128961.1|	-	0.0051	16.4	0.1	0.011	15.3	0.1	1.5	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
ABC_tran	PF00005.27	gi|257051128|ref|YP_003128961.1|	-	0.0068	16.9	0.0	0.012	16.2	0.0	1.5	1	0	0	1	1	1	1	ABC	transporter
NTPase_1	PF03266.15	gi|257051128|ref|YP_003128961.1|	-	0.0069	16.3	0.2	0.013	15.4	0.2	1.4	1	0	0	1	1	1	1	NTPase
AAA_22	PF13401.6	gi|257051128|ref|YP_003128961.1|	-	0.018	15.4	0.0	0.041	14.2	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
APS_kinase	PF01583.20	gi|257051128|ref|YP_003128961.1|	-	0.021	14.7	0.1	0.13	12.2	0.0	2.1	2	0	0	2	2	2	0	Adenylylsulphate	kinase
ATPase_2	PF01637.18	gi|257051128|ref|YP_003128961.1|	-	0.021	14.7	0.0	0.048	13.6	0.0	1.6	2	0	0	2	2	2	0	ATPase	domain	predominantly	from	Archaea
DUF3906	PF13046.6	gi|257051128|ref|YP_003128961.1|	-	0.031	14.4	0.2	0.068	13.3	0.2	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3906)
AAA_29	PF13555.6	gi|257051128|ref|YP_003128961.1|	-	0.07	12.9	0.0	0.17	11.6	0.0	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
ATP_bind_1	PF03029.17	gi|257051128|ref|YP_003128961.1|	-	0.074	12.8	0.1	0.2	11.4	0.0	1.7	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
CLP1_P	PF16575.5	gi|257051128|ref|YP_003128961.1|	-	0.11	12.3	0.0	0.2	11.4	0.0	1.4	1	0	0	1	1	1	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
TsaE	PF02367.17	gi|257051128|ref|YP_003128961.1|	-	0.16	12.0	0.1	2.4	8.2	0.1	2.2	2	0	0	2	2	2	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_14	PF13173.6	gi|257051128|ref|YP_003128961.1|	-	0.16	12.0	0.0	0.32	11.0	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
Dynamin_N	PF00350.23	gi|257051128|ref|YP_003128961.1|	-	0.18	11.9	0.1	0.36	10.9	0.1	1.5	1	0	0	1	1	1	0	Dynamin	family
AAA_23	PF13476.6	gi|257051128|ref|YP_003128961.1|	-	0.2	12.1	0.0	0.52	10.8	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
MoCF_biosynth	PF00994.24	gi|257051129|ref|YP_003128962.1|	-	1.3e-30	106.0	0.8	1.5e-30	105.8	0.8	1.0	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
LapA_dom	PF06305.11	gi|257051130|ref|YP_003128963.1|	-	0.13	12.1	1.1	0.2	11.5	1.1	1.4	1	0	0	1	1	1	0	Lipopolysaccharide	assembly	protein	A	domain
COX1	PF00115.20	gi|257051131|ref|YP_003128964.1|	-	6.1e-147	489.9	61.2	8.7e-147	489.4	61.2	1.2	1	0	0	1	1	1	1	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
Phage_holin_3_6	PF07332.11	gi|257051132|ref|YP_003128965.1|	-	0.037	14.1	0.6	0.044	13.8	0.6	1.1	1	0	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
DUF2721	PF11026.8	gi|257051132|ref|YP_003128965.1|	-	0.11	12.4	2.1	0.13	12.2	2.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2721)
RDD	PF06271.12	gi|257051132|ref|YP_003128965.1|	-	0.16	12.2	2.8	0.2	11.9	2.8	1.1	1	0	0	1	1	1	0	RDD	family
DUF3007	PF11460.8	gi|257051132|ref|YP_003128965.1|	-	0.21	11.8	1.2	0.26	11.6	1.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3007)
Cyt_c_ox_IV	PF12270.8	gi|257051133|ref|YP_003128966.1|	-	0.046	13.8	1.9	0.046	13.8	1.9	1.9	1	1	1	2	2	2	0	Cytochrome	c	oxidase	subunit	IV
CENP-F_leu_zip	PF10473.9	gi|257051134|ref|YP_003128967.1|	-	0.0001	22.3	14.7	0.00027	21.0	14.7	1.6	1	0	0	1	1	1	1	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
APG6_N	PF17675.1	gi|257051134|ref|YP_003128967.1|	-	0.00041	20.9	19.0	0.00041	20.9	19.0	2.6	3	0	0	3	3	1	1	Apg6	coiled-coil	region
Fez1	PF06818.15	gi|257051134|ref|YP_003128967.1|	-	0.0017	18.8	16.5	0.0017	18.8	16.5	3.0	2	2	0	2	2	1	1	Fez1
HMMR_N	PF15905.5	gi|257051134|ref|YP_003128967.1|	-	0.0023	17.5	7.1	0.0023	17.5	7.1	1.8	2	0	0	2	2	1	1	Hyaluronan	mediated	motility	receptor	N-terminal
CCDC158	PF15921.5	gi|257051134|ref|YP_003128967.1|	-	0.0032	15.4	9.1	0.0047	14.8	9.1	1.1	1	0	0	1	1	1	1	Coiled-coil	domain-containing	protein	158
FapA	PF03961.13	gi|257051134|ref|YP_003128967.1|	-	0.0053	15.4	4.0	0.0086	14.7	4.0	1.2	1	0	0	1	1	1	1	Flagellar	Assembly	Protein	A
GAS	PF13851.6	gi|257051134|ref|YP_003128967.1|	-	0.0065	15.8	10.6	0.013	14.9	10.6	1.4	1	0	0	1	1	1	1	Growth-arrest	specific	micro-tubule	binding
DUF4201	PF13870.6	gi|257051134|ref|YP_003128967.1|	-	0.013	15.3	11.0	0.07	12.9	10.9	2.0	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4201)
ZapB	PF06005.12	gi|257051134|ref|YP_003128967.1|	-	0.014	15.8	13.2	0.014	15.8	13.2	2.3	1	1	1	2	2	1	0	Cell	division	protein	ZapB
GldM_N	PF12081.8	gi|257051134|ref|YP_003128967.1|	-	0.016	15.3	2.4	0.041	14.0	2.4	1.7	1	0	0	1	1	1	0	GldM	N-terminal	domain
DivIC	PF04977.15	gi|257051134|ref|YP_003128967.1|	-	0.02	14.7	18.6	0.14	12.0	4.1	3.4	1	1	2	3	3	3	0	Septum	formation	initiator
HAUS-augmin3	PF14932.6	gi|257051134|ref|YP_003128967.1|	-	0.024	14.3	8.3	0.073	12.6	8.3	1.8	1	0	0	1	1	1	0	HAUS	augmin-like	complex	subunit	3
Phage_GP20	PF06810.11	gi|257051134|ref|YP_003128967.1|	-	0.052	13.4	12.0	0.93	9.3	2.1	2.5	1	1	1	2	2	2	0	Phage	minor	structural	protein	GP20
BST2	PF16716.5	gi|257051134|ref|YP_003128967.1|	-	0.055	14.1	6.2	0.23	12.1	6.2	2.1	1	0	0	1	1	1	0	Bone	marrow	stromal	antigen	2
TEX13	PF15186.6	gi|257051134|ref|YP_003128967.1|	-	0.074	12.7	9.2	0.17	11.6	9.2	1.6	1	0	0	1	1	1	0	Testis-expressed	sequence	13	protein	family
DUF2968	PF11180.8	gi|257051134|ref|YP_003128967.1|	-	0.098	12.3	11.1	0.32	10.6	11.1	2.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2968)
DUF1664	PF07889.12	gi|257051134|ref|YP_003128967.1|	-	0.1	12.6	4.2	0.3	11.1	4.1	1.8	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
Syntaxin-6_N	PF09177.11	gi|257051134|ref|YP_003128967.1|	-	0.13	12.8	24.1	0.12	13.0	7.9	4.1	2	1	1	3	3	3	0	Syntaxin	6,	N-terminal
YabA	PF06156.13	gi|257051134|ref|YP_003128967.1|	-	0.13	12.9	9.3	1.8	9.3	8.8	2.9	2	1	0	2	2	1	0	Initiation	control	protein	YabA
DUF4472	PF14739.6	gi|257051134|ref|YP_003128967.1|	-	0.14	12.9	11.7	1.1	10.0	11.3	2.7	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4472)
CCDC-167	PF15188.6	gi|257051134|ref|YP_003128967.1|	-	0.16	12.4	13.0	0.48	10.8	13.0	1.9	1	0	0	1	1	1	0	Coiled-coil	domain-containing	protein	167
Prefoldin	PF02996.17	gi|257051134|ref|YP_003128967.1|	-	0.22	11.5	9.4	3.3	7.6	3.8	3.0	1	1	2	3	3	3	0	Prefoldin	subunit
EzrA	PF06160.12	gi|257051134|ref|YP_003128967.1|	-	0.22	9.7	11.3	0.33	9.1	11.3	1.1	1	0	0	1	1	1	0	Septation	ring	formation	regulator,	EzrA
BLOC1_2	PF10046.9	gi|257051134|ref|YP_003128967.1|	-	0.31	11.4	6.5	12	6.3	1.5	2.7	1	1	1	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Lebercilin	PF15619.6	gi|257051134|ref|YP_003128967.1|	-	0.31	10.7	18.3	0.81	9.3	18.3	1.6	1	0	0	1	1	1	0	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
TMF_TATA_bd	PF12325.8	gi|257051134|ref|YP_003128967.1|	-	0.36	11.1	14.6	2.3	8.5	13.0	2.6	1	1	0	1	1	1	0	TATA	element	modulatory	factor	1	TATA	binding
Seryl_tRNA_N	PF02403.22	gi|257051134|ref|YP_003128967.1|	-	0.38	11.0	12.4	1.8	8.8	12.2	2.2	1	1	0	1	1	1	0	Seryl-tRNA	synthetase	N-terminal	domain
HALZ	PF02183.18	gi|257051134|ref|YP_003128967.1|	-	0.43	10.9	12.3	0.47	10.7	4.4	2.6	1	1	1	2	2	2	0	Homeobox	associated	leucine	zipper
Sec34	PF04136.15	gi|257051134|ref|YP_003128967.1|	-	0.46	10.4	3.5	1.1	9.1	3.5	1.6	1	0	0	1	1	1	0	Sec34-like	family
bZIP_1	PF00170.21	gi|257051134|ref|YP_003128967.1|	-	0.52	10.4	7.9	0.37	10.9	3.2	2.5	1	1	1	2	2	2	0	bZIP	transcription	factor
Spc7	PF08317.11	gi|257051134|ref|YP_003128967.1|	-	0.53	9.1	17.3	2.9	6.7	16.1	2.2	1	1	1	2	2	2	0	Spc7	kinetochore	protein
DUF16	PF01519.16	gi|257051134|ref|YP_003128967.1|	-	0.64	10.5	6.2	1.9	9.0	6.2	1.8	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF16
FlaC_arch	PF05377.11	gi|257051134|ref|YP_003128967.1|	-	0.76	10.2	10.4	3.2	8.2	2.5	2.7	1	1	1	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
STAT_alpha	PF01017.20	gi|257051134|ref|YP_003128967.1|	-	1.1	9.2	6.4	2.5	8.0	6.4	1.6	1	0	0	1	1	1	0	STAT	protein,	all-alpha	domain
DUF724	PF05266.14	gi|257051134|ref|YP_003128967.1|	-	1.1	9.0	9.0	3.5	7.4	9.0	1.9	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
Mod_r	PF07200.13	gi|257051134|ref|YP_003128967.1|	-	1.4	9.1	15.4	0.034	14.2	8.1	2.1	2	0	0	2	2	1	0	Modifier	of	rudimentary	(Mod(r))	protein
Atg14	PF10186.9	gi|257051134|ref|YP_003128967.1|	-	1.4	7.9	16.9	0.019	14.1	9.5	1.6	2	0	0	2	2	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
DUF2730	PF10805.8	gi|257051134|ref|YP_003128967.1|	-	2	8.6	4.0	5.1	7.3	4.0	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2730)
Med9	PF07544.13	gi|257051134|ref|YP_003128967.1|	-	2.1	8.5	9.3	4.8	7.3	8.0	2.2	1	1	1	2	2	2	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
CEP209_CC5	PF16574.5	gi|257051134|ref|YP_003128967.1|	-	2.1	8.5	14.3	4.9	7.3	3.3	2.7	1	1	1	2	2	2	0	Coiled-coil	region	of	centrosome	protein	CE290
DUF5082	PF16888.5	gi|257051134|ref|YP_003128967.1|	-	2.3	8.5	10.5	0.94	9.8	1.9	2.8	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF5082)
DUF812	PF05667.11	gi|257051134|ref|YP_003128967.1|	-	2.6	6.8	23.3	17	4.2	22.3	2.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF812)
DUF641	PF04859.12	gi|257051134|ref|YP_003128967.1|	-	2.8	8.3	9.7	8.2	6.8	9.4	2.0	1	1	0	1	1	1	0	Plant	protein	of	unknown	function	(DUF641)
TolA_bind_tri	PF16331.5	gi|257051134|ref|YP_003128967.1|	-	2.8	8.1	15.5	1.8	8.7	1.6	2.7	1	1	1	2	2	2	0	TolA	binding	protein	trimerisation
TMF_DNA_bd	PF12329.8	gi|257051134|ref|YP_003128967.1|	-	3.8	7.6	16.5	3.6	7.7	0.9	2.7	1	1	1	2	2	2	0	TATA	element	modulatory	factor	1	DNA	binding
DUF2353	PF09789.9	gi|257051134|ref|YP_003128967.1|	-	4.5	6.5	16.7	1.2	8.4	0.9	2.3	1	1	1	2	2	2	0	Uncharacterized	coiled-coil	protein	(DUF2353)
Prefoldin_2	PF01920.20	gi|257051134|ref|YP_003128967.1|	-	4.9	7.2	13.0	25	4.9	7.3	2.9	1	1	0	1	1	1	0	Prefoldin	subunit
Phlebovirus_NSM	PF07246.11	gi|257051134|ref|YP_003128967.1|	-	5.2	6.4	7.3	8.9	5.6	7.3	1.3	1	0	0	1	1	1	0	Phlebovirus	nonstructural	protein	NS-M
5_nucleotid	PF05761.14	gi|257051134|ref|YP_003128967.1|	-	6.3	5.6	6.2	12	4.7	6.2	1.4	1	0	0	1	1	1	0	5'	nucleotidase	family
SlyX	PF04102.12	gi|257051134|ref|YP_003128967.1|	-	6.6	7.4	13.0	8.6	7.1	10.0	2.8	1	1	1	2	2	2	0	SlyX
ABC_tran_CTD	PF16326.5	gi|257051134|ref|YP_003128967.1|	-	8.3	6.7	22.6	18	5.6	3.3	3.3	2	1	1	3	3	2	0	ABC	transporter	C-terminal	domain
DUF4200	PF13863.6	gi|257051134|ref|YP_003128967.1|	-	8.5	6.8	17.5	18	5.8	14.6	2.7	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4200)
Swi5	PF07061.11	gi|257051134|ref|YP_003128967.1|	-	9.8	6.3	8.1	1.4e+03	-0.6	8.1	3.2	1	1	0	1	1	1	0	Swi5
THOC7	PF05615.13	gi|257051134|ref|YP_003128967.1|	-	9.9	6.5	23.5	0.64	10.3	16.2	2.5	2	0	0	2	2	2	0	Tho	complex	subunit	7
HTH_24	PF13412.6	gi|257051135|ref|YP_003128968.1|	-	0.01	15.3	0.4	0.016	14.8	0.0	1.5	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
HTH_12	PF08461.10	gi|257051135|ref|YP_003128968.1|	-	0.013	15.4	0.0	0.025	14.5	0.0	1.6	1	1	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
HTH_5	PF01022.20	gi|257051135|ref|YP_003128968.1|	-	0.037	13.9	0.2	0.093	12.6	0.2	1.6	1	1	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.19	gi|257051135|ref|YP_003128968.1|	-	0.054	13.4	0.1	0.098	12.5	0.0	1.5	1	1	1	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
SNARE	PF05739.19	gi|257051135|ref|YP_003128968.1|	-	0.064	13.3	0.8	4.4	7.4	0.1	2.2	2	0	0	2	2	2	0	SNARE	domain
Phage_rep_org_N	PF09681.10	gi|257051135|ref|YP_003128968.1|	-	0.067	13.1	0.0	0.11	12.4	0.0	1.5	1	1	0	1	1	1	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
DUF977	PF06163.11	gi|257051135|ref|YP_003128968.1|	-	0.073	13.0	0.0	0.085	12.8	0.0	1.1	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF977)
HTH_IclR	PF09339.10	gi|257051135|ref|YP_003128968.1|	-	0.15	11.9	0.0	0.21	11.4	0.0	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
Adenylsucc_synt	PF00709.21	gi|257051136|ref|YP_003128969.1|	-	1.6e-151	505.0	0.0	1.9e-151	504.8	0.0	1.0	1	0	0	1	1	1	1	Adenylosuccinate	synthetase
GFO_IDH_MocA	PF01408.22	gi|257051137|ref|YP_003128970.1|	-	3.1e-20	73.2	0.1	5.8e-20	72.3	0.1	1.4	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
F420_oxidored	PF03807.17	gi|257051137|ref|YP_003128970.1|	-	0.19	12.3	0.1	0.45	11.1	0.1	1.6	1	0	0	1	1	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
Trm112p	PF03966.16	gi|257051138|ref|YP_003128971.1|	-	4.2e-10	40.0	1.1	8.2e-10	39.1	1.1	1.5	1	1	0	1	1	1	1	Trm112p-like	protein
DUF1451	PF07295.11	gi|257051138|ref|YP_003128971.1|	-	0.077	13.0	0.0	0.092	12.8	0.0	1.1	1	0	0	1	1	1	0	Zinc-ribbon	containing	domain
DUF3247	PF11607.8	gi|257051139|ref|YP_003128972.1|	-	0.083	13.2	0.1	0.13	12.5	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3247)
DUF3040	PF11239.8	gi|257051139|ref|YP_003128972.1|	-	0.25	11.6	5.2	0.55	10.5	5.2	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3040)
Trp_oprn_chp	PF09534.10	gi|257051139|ref|YP_003128972.1|	-	5.3	6.8	12.8	0.061	13.1	2.5	2.1	1	1	1	2	2	2	0	Tryptophan-associated	transmembrane	protein	(Trp_oprn_chp)
tRNA-synt_1e	PF01406.19	gi|257051141|ref|YP_003128974.1|	-	5.7e-107	357.5	0.0	1.3e-105	353.1	0.0	2.1	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(C)	catalytic	domain
DALR_2	PF09190.11	gi|257051141|ref|YP_003128974.1|	-	2.5e-09	37.5	0.0	1.2e-08	35.3	0.0	2.1	2	0	0	2	2	2	1	DALR	domain
tRNA-synt_1g	PF09334.11	gi|257051141|ref|YP_003128974.1|	-	2.3e-08	33.2	0.0	0.00024	20.0	0.0	2.1	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(M)
tRNA-synt_1f	PF01921.18	gi|257051141|ref|YP_003128974.1|	-	0.00012	21.1	0.0	0.055	12.4	0.0	2.2	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(K)
UVR	PF02151.19	gi|257051141|ref|YP_003128974.1|	-	0.011	15.4	0.1	0.031	14.0	0.1	1.7	1	0	0	1	1	1	0	UvrB/uvrC	motif
tRNA-synt_1c	PF00749.21	gi|257051141|ref|YP_003128974.1|	-	0.013	14.4	0.1	0.041	12.8	0.0	1.8	2	0	0	2	2	2	0	tRNA	synthetases	class	I	(E	and	Q),	catalytic	domain
tRNA-synt_1	PF00133.22	gi|257051141|ref|YP_003128974.1|	-	0.015	13.6	0.1	0.032	12.5	0.0	1.6	2	0	0	2	2	2	0	tRNA	synthetases	class	I	(I,	L,	M	and	V)
T3SSipB	PF16535.5	gi|257051141|ref|YP_003128974.1|	-	0.025	15.0	0.7	0.048	14.1	0.7	1.4	1	0	0	1	1	1	0	Type	III	cell	invasion	protein	SipB
Uso1_p115_C	PF04871.13	gi|257051141|ref|YP_003128974.1|	-	0.087	13.2	2.0	1.9	8.9	0.4	2.4	2	0	0	2	2	2	0	Uso1	/	p115	like	vesicle	tethering	protein,	C	terminal	region
PsbN	PF02468.15	gi|257051142|ref|YP_003128975.1|	-	0.25	11.2	1.3	3.4	7.6	0.2	2.1	2	0	0	2	2	2	0	Photosystem	II	reaction	centre	N	protein	(psbN)
COX14	PF14880.6	gi|257051142|ref|YP_003128975.1|	-	0.86	9.5	5.0	1.5	8.7	1.2	2.1	2	0	0	2	2	2	0	Cytochrome	oxidase	c	assembly
CorA	PF01544.18	gi|257051143|ref|YP_003128976.1|	-	2.5e-70	237.1	0.0	2.8e-70	236.9	0.0	1.0	1	0	0	1	1	1	1	CorA-like	Mg2+	transporter	protein
TctA	PF01970.16	gi|257051144|ref|YP_003128977.1|	-	6.1e-62	209.6	40.5	7.5e-62	209.4	40.5	1.1	1	0	0	1	1	1	1	Tripartite	tricarboxylate	transporter	TctA	family
SOR_SNZ	PF01680.17	gi|257051145|ref|YP_003128978.1|	-	1.5e-102	341.8	6.3	1.9e-102	341.4	6.3	1.1	1	0	0	1	1	1	1	SOR/SNZ	family
ThiG	PF05690.14	gi|257051145|ref|YP_003128978.1|	-	3e-09	36.5	6.4	3.1e-05	23.4	1.0	2.2	2	0	0	2	2	2	2	Thiazole	biosynthesis	protein	ThiG
OMPdecase	PF00215.24	gi|257051145|ref|YP_003128978.1|	-	0.0027	17.4	2.2	0.53	9.8	0.4	2.7	2	1	1	3	3	3	2	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
Dus	PF01207.17	gi|257051145|ref|YP_003128978.1|	-	0.004	16.3	1.6	1	8.4	0.1	2.3	2	1	0	2	2	2	2	Dihydrouridine	synthase	(Dus)
IGPS	PF00218.21	gi|257051145|ref|YP_003128978.1|	-	0.012	14.8	0.1	0.35	10.0	0.0	2.3	2	1	0	2	2	2	0	Indole-3-glycerol	phosphate	synthase
TetR_C_27	PF17935.1	gi|257051145|ref|YP_003128978.1|	-	0.058	13.5	0.0	0.13	12.3	0.0	1.5	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
MS_channel	PF00924.18	gi|257051146|ref|YP_003128979.1|	-	1.7e-45	155.1	0.0	3.9e-45	154.0	0.0	1.6	1	0	0	1	1	1	1	Mechanosensitive	ion	channel
DUF3172	PF11371.8	gi|257051146|ref|YP_003128979.1|	-	0.13	12.0	0.0	0.39	10.4	0.0	1.8	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3172)
GHMP_kinases_N	PF00288.26	gi|257051147|ref|YP_003128980.1|	-	9.4e-13	48.2	1.3	9.4e-13	48.2	1.3	2.0	2	0	0	2	2	2	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.13	gi|257051147|ref|YP_003128980.1|	-	1e-07	32.2	0.0	2.4e-07	31.0	0.0	1.7	1	0	0	1	1	1	1	GHMP	kinases	C	terminal
HisKA_7TM	PF16927.5	gi|257051148|ref|YP_003128981.1|	-	8.6e-45	153.5	18.8	1.2e-44	153.0	18.8	1.1	1	0	0	1	1	1	1	N-terminal	7TM	region	of	histidine	kinase
HATPase_c	PF02518.26	gi|257051148|ref|YP_003128981.1|	-	7.2e-14	52.3	0.0	1.3e-13	51.4	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.6	gi|257051148|ref|YP_003128981.1|	-	1.7e-05	24.8	0.0	4.2e-05	23.5	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
PAS_4	PF08448.10	gi|257051148|ref|YP_003128981.1|	-	4.7e-05	23.6	0.7	0.0002	21.5	0.3	2.4	2	1	0	2	2	2	1	PAS	fold
PAS_8	PF13188.7	gi|257051148|ref|YP_003128981.1|	-	0.00011	22.1	0.1	0.00041	20.3	0.1	2.0	1	0	0	1	1	1	1	PAS	domain
HisKA_4TM	PF16926.5	gi|257051148|ref|YP_003128981.1|	-	0.00011	21.8	0.1	0.00035	20.2	0.1	1.8	1	0	0	1	1	1	1	Archaeal	4TM	region	of	histidine	kinase
GAF_3	PF13492.6	gi|257051148|ref|YP_003128981.1|	-	0.0019	18.5	0.0	0.0053	17.1	0.0	1.8	1	1	0	1	1	1	1	GAF	domain
HATPase_c_5	PF14501.6	gi|257051148|ref|YP_003128981.1|	-	0.004	17.0	0.0	0.0078	16.1	0.0	1.4	1	0	0	1	1	1	1	GHKL	domain
HisKA	PF00512.25	gi|257051148|ref|YP_003128981.1|	-	0.01	15.9	1.6	0.025	14.6	0.2	2.4	2	1	1	3	3	3	0	His	Kinase	A	(phospho-acceptor)	domain
PAS	PF00989.25	gi|257051148|ref|YP_003128981.1|	-	0.012	15.6	0.0	0.051	13.6	0.0	2.1	1	1	0	1	1	1	0	PAS	fold
Amino_oxidase	PF01593.24	gi|257051149|ref|YP_003128982.1|	-	2.7e-30	106.1	0.0	4.4e-30	105.4	0.0	1.3	1	1	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
DAO	PF01266.24	gi|257051149|ref|YP_003128982.1|	-	1.9e-13	50.7	0.2	2.8e-13	50.2	0.2	1.3	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.6	gi|257051149|ref|YP_003128982.1|	-	8.7e-13	48.3	0.1	2.2e-12	47.0	0.1	1.8	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_2	PF00890.24	gi|257051149|ref|YP_003128982.1|	-	1.8e-05	24.0	2.7	0.0009	18.4	1.4	2.1	2	0	0	2	2	2	1	FAD	binding	domain
FAD_oxidored	PF12831.7	gi|257051149|ref|YP_003128982.1|	-	2.3e-05	23.9	0.2	0.00073	19.0	0.2	2.1	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
FMO-like	PF00743.19	gi|257051149|ref|YP_003128982.1|	-	5.4e-05	21.8	0.0	7.9e-05	21.3	0.0	1.2	1	0	0	1	1	1	1	Flavin-binding	monooxygenase-like
NAD_binding_9	PF13454.6	gi|257051149|ref|YP_003128982.1|	-	8.5e-05	22.6	0.2	0.0011	18.9	0.0	2.3	2	0	0	2	2	2	1	FAD-NAD(P)-binding
Pyr_redox_2	PF07992.14	gi|257051149|ref|YP_003128982.1|	-	0.00033	20.0	0.5	0.00076	18.8	0.1	1.7	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|257051149|ref|YP_003128982.1|	-	0.0018	18.8	0.8	0.0047	17.4	0.1	2.0	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
AlaDh_PNT_C	PF01262.21	gi|257051149|ref|YP_003128982.1|	-	0.0024	17.2	2.5	0.039	13.2	0.0	2.2	2	0	0	2	2	2	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
HI0933_like	PF03486.14	gi|257051149|ref|YP_003128982.1|	-	0.0065	15.2	0.6	0.0099	14.6	0.6	1.2	1	0	0	1	1	1	1	HI0933-like	protein
3HCDH_N	PF02737.18	gi|257051149|ref|YP_003128982.1|	-	0.007	16.3	0.0	0.01	15.7	0.0	1.2	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_2	PF03446.15	gi|257051149|ref|YP_003128982.1|	-	0.014	15.5	0.0	0.03	14.5	0.0	1.5	1	0	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Lycopene_cycl	PF05834.12	gi|257051149|ref|YP_003128982.1|	-	0.018	14.1	0.0	0.028	13.5	0.0	1.2	1	0	0	1	1	1	0	Lycopene	cyclase	protein
FAD_binding_3	PF01494.19	gi|257051149|ref|YP_003128982.1|	-	0.04	13.2	1.2	0.07	12.4	1.2	1.4	1	0	0	1	1	1	0	FAD	binding	domain
F420_oxidored	PF03807.17	gi|257051149|ref|YP_003128982.1|	-	0.041	14.5	0.2	0.16	12.6	0.1	2.0	2	0	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_7	PF13241.6	gi|257051149|ref|YP_003128982.1|	-	0.054	13.9	0.0	0.12	12.8	0.0	1.6	1	0	0	1	1	1	0	Putative	NAD(P)-binding
YjeF_N	PF03853.15	gi|257051149|ref|YP_003128982.1|	-	0.069	13.0	0.0	0.1	12.5	0.0	1.3	1	0	0	1	1	1	0	YjeF-related	protein	N-terminus
TrkA_N	PF02254.18	gi|257051149|ref|YP_003128982.1|	-	0.11	12.7	0.1	0.26	11.6	0.0	1.6	2	0	0	2	2	1	0	TrkA-N	domain
Glyco_transf_4	PF13439.6	gi|257051149|ref|YP_003128982.1|	-	0.12	12.3	0.1	0.19	11.7	0.1	1.3	1	0	0	1	1	1	0	Glycosyltransferase	Family	4
GIDA	PF01134.22	gi|257051149|ref|YP_003128982.1|	-	0.16	11.1	0.1	0.23	10.5	0.1	1.2	1	0	0	1	1	1	0	Glucose	inhibited	division	protein	A
Thi4	PF01946.17	gi|257051149|ref|YP_003128982.1|	-	0.64	9.2	4.0	0.21	10.8	0.5	2.0	3	0	0	3	3	3	0	Thi4	family
GIDE	PF12483.8	gi|257051150|ref|YP_003128983.1|	-	6e-07	29.0	0.0	0.0012	18.3	0.0	2.3	2	0	0	2	2	2	2	E3	Ubiquitin	ligase
Deltameth_res	PF16020.5	gi|257051150|ref|YP_003128983.1|	-	0.037	13.9	0.0	0.089	12.7	0.0	1.6	1	0	0	1	1	1	0	Deltamethrin	resistance
Pyr_redox_2	PF07992.14	gi|257051153|ref|YP_003128986.1|	-	7.7e-44	150.1	0.4	9.4e-44	149.8	0.4	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|257051153|ref|YP_003128986.1|	-	2.1e-10	41.0	0.5	5.5e-05	23.7	0.1	3.3	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|257051153|ref|YP_003128986.1|	-	6.4e-09	35.5	0.0	8.4e-09	35.1	0.0	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Rubredoxin_C	PF18267.1	gi|257051153|ref|YP_003128986.1|	-	7.1e-08	32.3	0.0	1.1e-06	28.5	0.0	2.8	3	0	0	3	3	3	1	Rubredoxin	NAD+	reductase	C-terminal	domain
NAD_binding_8	PF13450.6	gi|257051153|ref|YP_003128986.1|	-	0.004	17.3	0.4	2	8.7	0.0	3.5	3	0	0	3	3	3	1	NAD(P)-binding	Rossmann-like	domain
HI0933_like	PF03486.14	gi|257051153|ref|YP_003128986.1|	-	0.0088	14.8	0.0	0.14	10.8	0.0	2.3	3	0	0	3	3	3	1	HI0933-like	protein
FAD_binding_2	PF00890.24	gi|257051153|ref|YP_003128986.1|	-	0.019	14.1	0.5	17	4.4	0.0	3.1	3	0	0	3	3	3	0	FAD	binding	domain
Reductase_C	PF14759.6	gi|257051153|ref|YP_003128986.1|	-	0.023	15.2	0.0	0.069	13.7	0.0	1.9	1	0	0	1	1	1	0	Reductase	C-terminal
DEK_C	PF08766.11	gi|257051156|ref|YP_003128989.1|	-	0.025	14.5	0.1	0.041	13.8	0.1	1.2	1	0	0	1	1	1	0	DEK	C	terminal	domain
TrmB	PF01978.19	gi|257051156|ref|YP_003128989.1|	-	0.079	12.9	0.1	0.62	10.0	0.1	2.1	1	1	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
PMT_2	PF13231.6	gi|257051157|ref|YP_003128990.1|	-	8.6e-12	45.5	2.5	8.6e-12	45.5	2.5	2.8	2	1	0	2	2	2	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
CPSase_L_D2	PF02786.17	gi|257051158|ref|YP_003128991.1|	-	6.7e-98	326.4	0.3	2.1e-62	210.4	0.0	2.2	2	0	0	2	2	2	2	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
CPSase_L_D3	PF02787.19	gi|257051158|ref|YP_003128991.1|	-	5.6e-26	91.3	0.0	1.4e-25	90.0	0.0	1.7	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthetase	large	chain,	oligomerisation	domain
ATP-grasp	PF02222.22	gi|257051158|ref|YP_003128991.1|	-	2.4e-15	56.5	0.0	2.4e-06	27.3	0.0	2.6	3	0	0	3	3	3	2	ATP-grasp	domain
ATPgrasp_Ter	PF15632.6	gi|257051158|ref|YP_003128991.1|	-	1.1e-13	51.0	0.0	8.9e-07	28.7	0.0	2.5	2	0	0	2	2	2	2	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
Dala_Dala_lig_C	PF07478.13	gi|257051158|ref|YP_003128991.1|	-	4.5e-12	46.0	0.0	1.1e-06	28.3	0.0	2.6	2	1	0	2	2	2	2	D-ala	D-ala	ligase	C-terminus
ATP-grasp_3	PF02655.14	gi|257051158|ref|YP_003128991.1|	-	4.9e-10	39.7	0.1	4.6e-05	23.5	0.0	2.4	2	0	0	2	2	2	2	ATP-grasp	domain
ATP-grasp_5	PF13549.6	gi|257051158|ref|YP_003128991.1|	-	0.024	14.1	0.0	0.23	10.9	0.0	2.4	2	0	0	2	2	2	0	ATP-grasp	domain
Peptidase_M24	PF00557.24	gi|257051160|ref|YP_003128993.1|	-	3.9e-41	141.0	0.7	5.9e-41	140.5	0.7	1.3	1	1	0	1	1	1	1	Metallopeptidase	family	M24
OrfB_IS605	PF01385.19	gi|257051161|ref|YP_003128994.1|	-	2.7e-32	111.5	0.2	5.4e-32	110.5	0.2	1.5	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|257051161|ref|YP_003128994.1|	-	1.1e-19	70.1	0.3	2.5e-19	69.0	0.3	1.7	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Gal-bind_lectin	PF00337.22	gi|257051161|ref|YP_003128994.1|	-	0.15	11.6	0.1	16	5.0	0.0	2.2	2	0	0	2	2	2	0	Galactoside-binding	lectin
HIT	PF01230.23	gi|257051163|ref|YP_003128996.1|	-	9.5e-14	51.9	0.0	2.3e-13	50.7	0.0	1.6	2	0	0	2	2	2	1	HIT	domain
DcpS_C	PF11969.8	gi|257051163|ref|YP_003128996.1|	-	0.00014	22.3	0.0	0.00024	21.5	0.0	1.4	1	0	0	1	1	1	1	Scavenger	mRNA	decapping	enzyme	C-term	binding
CwfJ_C_1	PF04677.15	gi|257051163|ref|YP_003128996.1|	-	0.0054	16.6	0.0	0.0098	15.8	0.0	1.4	1	0	0	1	1	1	1	Protein	similar	to	CwfJ	C-terminus	1
MAM33	PF02330.16	gi|257051164|ref|YP_003128997.1|	-	0.022	14.7	0.4	0.024	14.6	0.4	1.0	1	0	0	1	1	1	0	Mitochondrial	glycoprotein
P4Ha_N	PF08336.11	gi|257051164|ref|YP_003128997.1|	-	0.054	13.5	0.1	0.055	13.5	0.1	1.0	1	0	0	1	1	1	0	Prolyl	4-Hydroxylase	alpha-subunit,	N-terminal	region
Cation_efflux	PF01545.21	gi|257051165|ref|YP_003128998.1|	-	1.3e-39	136.0	5.7	1.7e-39	135.6	5.7	1.1	1	0	0	1	1	1	1	Cation	efflux	family
ZT_dimer	PF16916.5	gi|257051165|ref|YP_003128998.1|	-	9.9e-17	60.8	4.0	1.6e-16	60.2	4.0	1.3	1	0	0	1	1	1	1	Dimerisation	domain	of	Zinc	Transporter
CclA_1	PF16942.5	gi|257051165|ref|YP_003128998.1|	-	3.9	7.8	8.6	1.6	9.0	3.6	2.3	2	0	0	2	2	2	0	Putative	cyclic	bacteriocin
PGM_PMM_I	PF02878.16	gi|257051166|ref|YP_003128999.1|	-	3.6e-40	136.9	0.0	7.8e-40	135.8	0.0	1.5	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
PGM_PMM_II	PF02879.16	gi|257051166|ref|YP_003128999.1|	-	8.7e-26	90.5	0.1	1.7e-25	89.6	0.1	1.5	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
PGM_PMM_III	PF02880.16	gi|257051166|ref|YP_003128999.1|	-	6e-25	87.7	0.0	1.2e-24	86.6	0.0	1.5	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	III
PGM_PMM_IV	PF00408.20	gi|257051166|ref|YP_003128999.1|	-	8e-16	58.0	0.0	2.1e-15	56.6	0.0	1.7	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	C-terminal	domain
ACT	PF01842.25	gi|257051166|ref|YP_003128999.1|	-	0.12	12.1	0.0	0.82	9.5	0.0	2.4	2	0	0	2	2	2	0	ACT	domain
Fe_dep_repress	PF01325.19	gi|257051167|ref|YP_003129000.1|	-	9.6e-20	70.5	0.1	1.4e-19	70.0	0.1	1.2	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Fe_dep_repr_C	PF02742.15	gi|257051167|ref|YP_003129000.1|	-	1.8e-17	63.2	1.6	1.9e-17	63.1	0.4	1.7	2	0	0	2	2	1	1	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
MarR_2	PF12802.7	gi|257051167|ref|YP_003129000.1|	-	1.3e-08	34.6	0.8	2.5e-08	33.7	0.2	1.8	2	0	0	2	2	2	1	MarR	family
HTH_Crp_2	PF13545.6	gi|257051167|ref|YP_003129000.1|	-	4.2e-06	26.6	0.1	9.1e-06	25.6	0.1	1.5	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|257051167|ref|YP_003129000.1|	-	2.7e-05	23.9	0.1	5.1e-05	23.0	0.1	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
GntR	PF00392.21	gi|257051167|ref|YP_003129000.1|	-	3.5e-05	23.4	0.1	8.2e-05	22.2	0.1	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_1	PF00126.27	gi|257051167|ref|YP_003129000.1|	-	0.00013	21.8	0.4	0.00034	20.5	0.4	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
MarR	PF01047.22	gi|257051167|ref|YP_003129000.1|	-	0.00015	21.7	0.0	0.00024	20.9	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|257051167|ref|YP_003129000.1|	-	0.00021	20.8	0.0	0.00036	20.0	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|257051167|ref|YP_003129000.1|	-	0.00023	21.0	0.0	0.00048	19.9	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|257051167|ref|YP_003129000.1|	-	0.00091	19.2	0.5	0.0061	16.6	0.1	2.1	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_29	PF13551.6	gi|257051167|ref|YP_003129000.1|	-	0.001	19.0	0.1	0.0038	17.2	0.1	1.9	2	0	0	2	2	2	1	Winged	helix-turn	helix
Rrf2	PF02082.20	gi|257051167|ref|YP_003129000.1|	-	0.0024	18.2	0.0	0.0037	17.6	0.0	1.3	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_23	PF13384.6	gi|257051167|ref|YP_003129000.1|	-	0.015	15.1	0.0	0.035	13.9	0.0	1.6	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_10	PF04967.12	gi|257051167|ref|YP_003129000.1|	-	0.018	14.8	0.0	0.038	13.8	0.0	1.5	1	0	0	1	1	1	0	HTH	DNA	binding	domain
TrmB	PF01978.19	gi|257051167|ref|YP_003129000.1|	-	0.021	14.7	0.2	0.047	13.6	0.1	1.7	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
LPD22	PF18834.1	gi|257051167|ref|YP_003129000.1|	-	0.023	14.9	0.0	0.042	14.1	0.0	1.5	1	0	0	1	1	1	0	Large	polyvalent	protein	associated	domain	22
Crp	PF00325.20	gi|257051167|ref|YP_003129000.1|	-	0.025	14.2	0.0	0.047	13.4	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	crp	family
HTH_28	PF13518.6	gi|257051167|ref|YP_003129000.1|	-	0.053	13.7	0.1	0.094	12.9	0.1	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
Dimerisation2	PF16864.5	gi|257051167|ref|YP_003129000.1|	-	0.097	12.7	0.1	0.16	12.0	0.1	1.3	1	0	0	1	1	1	0	Dimerisation	domain
TFIIE_alpha	PF02002.17	gi|257051167|ref|YP_003129000.1|	-	0.11	12.3	0.0	0.19	11.6	0.0	1.4	1	0	0	1	1	1	0	TFIIE	alpha	subunit
Meth_synt_1	PF08267.12	gi|257051168|ref|YP_003129001.1|	-	2.9e-12	46.7	0.0	2.2e-11	43.8	0.0	1.9	1	1	1	2	2	2	1	Cobalamin-independent	synthase,	N-terminal	domain
Meth_synt_2	PF01717.18	gi|257051168|ref|YP_003129001.1|	-	9.2e-09	35.0	0.0	0.0032	16.8	0.0	2.0	2	0	0	2	2	2	2	Cobalamin-independent	synthase,	Catalytic	domain
Meth_synt_2	PF01717.18	gi|257051169|ref|YP_003129002.1|	-	3.6e-56	190.8	0.0	4.9e-56	190.3	0.0	1.2	1	0	0	1	1	1	1	Cobalamin-independent	synthase,	Catalytic	domain
Meth_synt_1	PF08267.12	gi|257051169|ref|YP_003129002.1|	-	6.3e-14	52.2	0.0	9.3e-14	51.6	0.0	1.2	1	0	0	1	1	1	1	Cobalamin-independent	synthase,	N-terminal	domain
URO-D	PF01208.17	gi|257051169|ref|YP_003129002.1|	-	0.00024	20.3	0.0	0.00047	19.4	0.0	1.5	1	1	0	1	1	1	1	Uroporphyrinogen	decarboxylase	(URO-D)
HMGL-like	PF00682.19	gi|257051169|ref|YP_003129002.1|	-	0.095	12.2	0.0	0.95	9.0	0.0	2.1	2	0	0	2	2	2	0	HMGL-like
Corona_6B_7B	PF03262.13	gi|257051169|ref|YP_003129002.1|	-	0.17	11.3	0.0	0.29	10.5	0.0	1.3	1	0	0	1	1	1	0	Coronavirus	6B/7B	protein
NUDIX	PF00293.28	gi|257051171|ref|YP_003129004.1|	-	2.3e-14	53.5	0.1	3e-14	53.2	0.1	1.2	1	0	0	1	1	1	1	NUDIX	domain
TFIIB	PF00382.19	gi|257051172|ref|YP_003129005.1|	-	7e-40	134.9	0.2	7e-19	67.7	0.0	2.2	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|257051172|ref|YP_003129005.1|	-	4.6e-17	61.3	5.0	1e-16	60.1	5.0	1.6	1	0	0	1	1	1	1	TFIIB	zinc-binding
Cyclin_C	PF02984.19	gi|257051172|ref|YP_003129005.1|	-	0.0017	18.4	0.0	0.19	11.8	0.0	2.2	2	0	0	2	2	2	1	Cyclin,	C-terminal	domain
Sigma70_r4	PF04545.16	gi|257051172|ref|YP_003129005.1|	-	0.017	14.7	0.0	0.017	14.7	0.0	3.2	4	0	0	4	4	4	0	Sigma-70,	region	4
zf-RRN7	PF11781.8	gi|257051172|ref|YP_003129005.1|	-	0.038	13.7	2.6	0.057	13.1	2.6	1.3	1	0	0	1	1	1	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
A2L_zn_ribbon	PF08792.10	gi|257051172|ref|YP_003129005.1|	-	0.14	11.9	1.2	0.29	10.9	1.2	1.5	1	1	0	1	1	1	0	A2L	zinc	ribbon	domain
zinc_ribbon_9	PF14369.6	gi|257051172|ref|YP_003129005.1|	-	0.18	12.1	0.3	0.18	12.1	0.3	1.8	1	1	1	2	2	2	0	zinc-ribbon
DUF1272	PF06906.11	gi|257051172|ref|YP_003129005.1|	-	0.19	11.9	0.0	0.19	11.9	0.0	1.9	3	0	0	3	3	2	0	Protein	of	unknown	function	(DUF1272)
zf-ribbon_3	PF13248.6	gi|257051172|ref|YP_003129005.1|	-	0.22	11.0	3.7	1.1	8.8	3.7	2.0	1	1	0	1	1	1	0	zinc-ribbon	domain
Auto_anti-p27	PF06677.12	gi|257051172|ref|YP_003129005.1|	-	0.36	11.0	1.5	0.63	10.2	1.5	1.4	1	0	0	1	1	1	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
Zn-ribbon_8	PF09723.10	gi|257051172|ref|YP_003129005.1|	-	0.38	10.9	4.3	0.87	9.8	0.5	2.4	1	1	1	2	2	2	0	Zinc	ribbon	domain
Glu-tRNAGln	PF02686.15	gi|257051173|ref|YP_003129006.1|	-	3.1e-17	62.6	2.9	3.1e-17	62.6	2.9	1.4	2	0	0	2	2	2	1	Glu-tRNAGln	amidotransferase	C	subunit
Amidase	PF01425.21	gi|257051174|ref|YP_003129007.1|	-	2.6e-140	468.3	0.3	3.2e-140	468.1	0.3	1.0	1	0	0	1	1	1	1	Amidase
FixG_C	PF11614.8	gi|257051175|ref|YP_003129008.1|	-	0.029	14.6	0.1	0.055	13.7	0.1	1.5	1	1	0	1	1	1	0	IG-like	fold	at	C-terminal	of	FixG,	putative	oxidoreductase
ASH	PF15780.5	gi|257051175|ref|YP_003129008.1|	-	0.094	12.9	1.2	0.21	11.8	0.7	1.8	1	1	1	2	2	2	0	Abnormal	spindle-like	microcephaly-assoc'd,	ASPM-SPD-2-Hydin
DUF756	PF05506.12	gi|257051175|ref|YP_003129008.1|	-	0.11	13.4	0.0	15	6.6	0.0	2.3	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF756)
TAT_signal	PF10518.9	gi|257051176|ref|YP_003129009.1|	-	0.045	13.6	0.1	0.045	13.6	0.1	1.8	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Ndc80_HEC	PF03801.13	gi|257051176|ref|YP_003129009.1|	-	0.15	11.7	0.0	0.2	11.3	0.0	1.1	1	0	0	1	1	1	0	HEC/Ndc80p	family
Glycos_transf_1	PF00534.20	gi|257051177|ref|YP_003129010.1|	-	7.4e-28	97.2	0.0	1.4e-26	93.1	0.0	2.0	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|257051177|ref|YP_003129010.1|	-	4.1e-24	85.5	0.3	3.2e-23	82.6	0.2	2.2	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_1_4	PF13692.6	gi|257051177|ref|YP_003129010.1|	-	3.1e-20	73.0	0.0	3.3e-18	66.4	0.0	2.4	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.6	gi|257051177|ref|YP_003129010.1|	-	3.6e-14	53.5	5.8	4e-13	50.1	1.7	2.4	2	1	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|257051177|ref|YP_003129010.1|	-	0.0059	17.0	0.0	0.016	15.6	0.0	1.7	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_2	PF13477.6	gi|257051177|ref|YP_003129010.1|	-	0.023	14.7	0.0	0.094	12.7	0.0	1.9	2	0	0	2	2	2	0	Glycosyl	transferase	4-like
Rpr2	PF04032.16	gi|257051178|ref|YP_003129011.1|	-	4.8e-11	42.8	0.1	6e-11	42.5	0.1	1.1	1	0	0	1	1	1	1	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
DUF4193	PF13834.6	gi|257051178|ref|YP_003129011.1|	-	0.1	13.1	0.6	0.15	12.6	0.6	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4193)
CRS1_YhbY	PF01985.21	gi|257051179|ref|YP_003129012.1|	-	8.1e-11	42.0	0.0	9.4e-11	41.7	0.0	1.0	1	0	0	1	1	1	1	CRS1	/	YhbY	(CRM)	domain
MS_channel	PF00924.18	gi|257051180|ref|YP_003129013.1|	-	2.7e-54	183.8	0.2	3.7e-54	183.4	0.2	1.2	1	0	0	1	1	1	1	Mechanosensitive	ion	channel
Nitrate_red_gam	PF02665.14	gi|257051180|ref|YP_003129013.1|	-	0.089	12.3	1.7	0.13	11.8	1.7	1.1	1	0	0	1	1	1	0	Nitrate	reductase	gamma	subunit
Lipase_GDSL_3	PF14606.6	gi|257051181|ref|YP_003129014.1|	-	1.4e-31	110.0	0.0	1.8e-31	109.7	0.0	1.1	1	0	0	1	1	1	1	GDSL-like	Lipase/Acylhydrolase	family
Lipase_GDSL_2	PF13472.6	gi|257051181|ref|YP_003129014.1|	-	1.2e-17	64.9	0.1	1.8e-17	64.3	0.1	1.2	1	0	0	1	1	1	1	GDSL-like	Lipase/Acylhydrolase	family
T4SS	PF07996.11	gi|257051183|ref|YP_003129016.1|	-	0.0018	18.7	1.8	0.025	15.0	0.4	2.0	1	1	1	2	2	2	2	Type	IV	secretion	system	proteins
RmuC	PF02646.16	gi|257051183|ref|YP_003129016.1|	-	0.0026	17.0	1.1	0.0033	16.6	1.1	1.1	1	0	0	1	1	1	1	RmuC	family
GOLGA2L5	PF15070.6	gi|257051183|ref|YP_003129016.1|	-	0.0033	16.2	1.3	0.0033	16.2	1.3	1.1	1	0	0	1	1	1	1	Putative	golgin	subfamily	A	member	2-like	protein	5
EzrA	PF06160.12	gi|257051183|ref|YP_003129016.1|	-	0.0033	15.7	0.8	0.0039	15.4	0.8	1.1	1	0	0	1	1	1	1	Septation	ring	formation	regulator,	EzrA
DivIVA	PF05103.13	gi|257051183|ref|YP_003129016.1|	-	0.0035	17.4	8.9	0.0041	17.2	8.9	1.0	1	0	0	1	1	1	1	DivIVA	protein
TBK1_CCD1	PF18394.1	gi|257051183|ref|YP_003129016.1|	-	0.0046	16.5	0.2	0.0064	16.1	0.2	1.2	1	0	0	1	1	1	1	TANK-binding	kinase	1	coiled-coil	domain	1
LPP	PF04728.13	gi|257051183|ref|YP_003129016.1|	-	0.005	17.2	0.4	0.005	17.2	0.4	2.4	3	0	0	3	3	2	1	Lipoprotein	leucine-zipper
Herpes_UL6	PF01763.16	gi|257051183|ref|YP_003129016.1|	-	0.0061	15.1	1.6	0.0067	15.0	1.6	1.0	1	0	0	1	1	1	1	Herpesvirus	UL6	like
TolA_bind_tri	PF16331.5	gi|257051183|ref|YP_003129016.1|	-	0.0062	16.6	2.9	0.0095	16.0	2.9	1.3	1	0	0	1	1	1	1	TolA	binding	protein	trimerisation
Spc7	PF08317.11	gi|257051183|ref|YP_003129016.1|	-	0.0067	15.3	3.7	0.0071	15.3	3.7	1.1	1	0	0	1	1	1	1	Spc7	kinetochore	protein
HOOK	PF05622.12	gi|257051183|ref|YP_003129016.1|	-	0.0068	14.6	2.7	0.007	14.6	2.7	1.0	1	0	0	1	1	1	1	HOOK	protein
TMCO5	PF14992.6	gi|257051183|ref|YP_003129016.1|	-	0.0073	15.9	3.1	0.0081	15.8	3.1	1.1	1	0	0	1	1	1	1	TMCO5	family
ATG16	PF08614.11	gi|257051183|ref|YP_003129016.1|	-	0.0076	16.5	3.3	0.0086	16.3	3.3	1.1	1	0	0	1	1	1	1	Autophagy	protein	16	(ATG16)
DUF3450	PF11932.8	gi|257051183|ref|YP_003129016.1|	-	0.0078	15.5	2.8	0.0091	15.3	2.8	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3450)
BLOC1_2	PF10046.9	gi|257051183|ref|YP_003129016.1|	-	0.0085	16.4	1.3	0.014	15.7	1.3	1.3	1	0	0	1	1	1	1	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
YscO-like	PF16789.5	gi|257051183|ref|YP_003129016.1|	-	0.011	15.8	2.6	0.012	15.7	2.6	1.1	1	0	0	1	1	1	0	YscO-like	protein
CENP-F_leu_zip	PF10473.9	gi|257051183|ref|YP_003129016.1|	-	0.011	15.7	4.1	0.015	15.4	4.1	1.2	1	0	0	1	1	1	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Ax_dynein_light	PF10211.9	gi|257051183|ref|YP_003129016.1|	-	0.012	15.6	1.0	0.013	15.5	1.0	1.2	1	0	0	1	1	1	0	Axonemal	dynein	light	chain
Med9	PF07544.13	gi|257051183|ref|YP_003129016.1|	-	0.012	15.7	1.1	0.02	15.0	1.1	1.4	1	0	0	1	1	1	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
DUF948	PF06103.11	gi|257051183|ref|YP_003129016.1|	-	0.016	15.5	2.2	0.02	15.1	1.9	1.4	1	1	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF948)
Atg14	PF10186.9	gi|257051183|ref|YP_003129016.1|	-	0.016	14.3	0.3	0.017	14.3	0.3	1.1	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
DUF16	PF01519.16	gi|257051183|ref|YP_003129016.1|	-	0.019	15.4	2.1	0.024	15.1	2.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF16
TPR_MLP1_2	PF07926.12	gi|257051183|ref|YP_003129016.1|	-	0.021	14.9	5.6	0.026	14.6	5.0	1.4	1	1	0	1	1	1	0	TPR/MLP1/MLP2-like	protein
YabA	PF06156.13	gi|257051183|ref|YP_003129016.1|	-	0.025	15.2	0.3	0.031	14.9	0.3	1.3	1	0	0	1	1	1	0	Initiation	control	protein	YabA
FlaC_arch	PF05377.11	gi|257051183|ref|YP_003129016.1|	-	0.025	14.9	0.9	0.042	14.2	0.9	1.5	1	0	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
DUF1664	PF07889.12	gi|257051183|ref|YP_003129016.1|	-	0.039	14.0	1.9	0.053	13.6	1.9	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
UPF0242	PF06785.11	gi|257051183|ref|YP_003129016.1|	-	0.049	13.7	1.4	0.054	13.6	1.4	1.1	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
NBD94	PF16830.5	gi|257051183|ref|YP_003129016.1|	-	0.05	14.0	0.6	0.06	13.7	0.6	1.3	1	1	0	1	1	1	0	Nucleotide-Binding	Domain	94	of	RH
AATF-Che1	PF13339.6	gi|257051183|ref|YP_003129016.1|	-	0.05	14.3	0.8	0.06	14.0	0.8	1.1	1	0	0	1	1	1	0	Apoptosis	antagonizing	transcription	factor
AAA_13	PF13166.6	gi|257051183|ref|YP_003129016.1|	-	0.053	12.2	1.9	0.053	12.2	1.9	1.1	1	0	0	1	1	1	0	AAA	domain
DUF745	PF05335.13	gi|257051183|ref|YP_003129016.1|	-	0.056	13.2	6.5	0.083	12.6	6.5	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF745)
DUF3782	PF12644.7	gi|257051183|ref|YP_003129016.1|	-	0.062	13.5	0.9	0.08	13.1	0.1	1.6	2	0	0	2	2	1	0	Protein	of	unknown	function	(DUF3782)
COG2	PF06148.11	gi|257051183|ref|YP_003129016.1|	-	0.065	13.3	1.2	0.077	13.1	1.2	1.2	1	0	0	1	1	1	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
TMPIT	PF07851.13	gi|257051183|ref|YP_003129016.1|	-	0.073	12.3	0.5	0.079	12.2	0.5	1.0	1	0	0	1	1	1	0	TMPIT-like	protein
DASH_Hsk3	PF08227.11	gi|257051183|ref|YP_003129016.1|	-	0.083	13.3	0.3	0.15	12.4	0.2	1.5	1	1	0	1	1	1	0	DASH	complex	subunit	Hsk3	like
NPV_P10	PF05531.12	gi|257051183|ref|YP_003129016.1|	-	0.084	13.3	2.0	0.13	12.7	2.0	1.4	1	0	0	1	1	1	0	Nucleopolyhedrovirus	P10	protein
DNA_pol_A_exoN	PF18305.1	gi|257051183|ref|YP_003129016.1|	-	0.094	13.0	0.3	0.72	10.2	0.1	2.0	1	1	1	2	2	2	0	3'	to	5'	exonuclease	C-terminal	domain
Sec34	PF04136.15	gi|257051183|ref|YP_003129016.1|	-	0.11	12.3	0.9	0.14	12.0	0.9	1.1	1	0	0	1	1	1	0	Sec34-like	family
Prominin	PF05478.11	gi|257051183|ref|YP_003129016.1|	-	0.11	10.4	0.2	0.11	10.4	0.2	1.1	1	0	0	1	1	1	0	Prominin
IFT57	PF10498.9	gi|257051183|ref|YP_003129016.1|	-	0.14	11.1	5.3	0.044	12.8	2.6	1.4	1	1	0	1	1	1	0	Intra-flagellar	transport	protein	57
DUF4795	PF16043.5	gi|257051183|ref|YP_003129016.1|	-	0.17	11.4	4.5	0.28	10.8	4.5	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4795)
Seryl_tRNA_N	PF02403.22	gi|257051183|ref|YP_003129016.1|	-	0.17	12.1	3.7	0.29	11.4	3.7	1.6	1	1	0	1	1	1	0	Seryl-tRNA	synthetase	N-terminal	domain
Snapin_Pallidin	PF14712.6	gi|257051183|ref|YP_003129016.1|	-	0.19	12.2	2.8	0.31	11.5	2.6	1.5	1	1	0	1	1	1	0	Snapin/Pallidin
Spc24	PF08286.11	gi|257051183|ref|YP_003129016.1|	-	0.21	11.9	4.2	0.31	11.3	4.2	1.4	1	1	0	1	1	1	0	Spc24	subunit	of	Ndc80
Lge1	PF11488.8	gi|257051183|ref|YP_003129016.1|	-	0.24	11.6	3.5	0.27	11.4	1.5	1.9	1	1	1	2	2	2	0	Transcriptional	regulatory	protein	LGE1
DUF2730	PF10805.8	gi|257051183|ref|YP_003129016.1|	-	0.25	11.5	1.7	0.38	10.9	1.7	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2730)
zf-C4H2	PF10146.9	gi|257051183|ref|YP_003129016.1|	-	0.39	11.0	2.8	0.6	10.4	2.8	1.3	1	1	0	1	1	1	0	Zinc	finger-containing	protein
SlyX	PF04102.12	gi|257051183|ref|YP_003129016.1|	-	1.5	9.5	6.3	12	6.6	1.2	2.3	1	1	1	2	2	2	0	SlyX
CoA_binding_2	PF13380.6	gi|257051184|ref|YP_003129017.1|	-	5.1e-35	120.5	0.0	6.1e-35	120.2	0.0	1.1	1	0	0	1	1	1	1	CoA	binding	domain
DUF3088	PF11287.8	gi|257051184|ref|YP_003129017.1|	-	0.12	12.1	0.1	0.24	11.2	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3088)
ICAT	PF06384.11	gi|257051185|ref|YP_003129018.1|	-	0.04	14.2	0.1	0.12	12.7	0.1	1.7	1	1	0	1	1	1	0	Beta-catenin-interacting	protein	ICAT
PadR	PF03551.14	gi|257051188|ref|YP_003129021.1|	-	1.1e-10	41.3	0.6	3.8e-10	39.6	0.6	1.8	1	1	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_5	PF01022.20	gi|257051188|ref|YP_003129021.1|	-	4.1e-10	39.4	0.0	6.4e-10	38.8	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|257051188|ref|YP_003129021.1|	-	1.2e-05	25.3	0.0	2.1e-05	24.5	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|257051188|ref|YP_003129021.1|	-	2.3e-05	24.2	0.1	3e-05	23.8	0.1	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|257051188|ref|YP_003129021.1|	-	6.8e-05	22.3	0.0	0.0007	19.1	0.0	2.3	2	1	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|257051188|ref|YP_003129021.1|	-	0.00024	20.9	0.0	0.0011	18.8	0.0	1.8	2	0	0	2	2	2	1	MarR	family
HTH_45	PF14947.6	gi|257051188|ref|YP_003129021.1|	-	0.00038	20.4	0.2	0.00048	20.1	0.2	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_11	PF08279.12	gi|257051188|ref|YP_003129021.1|	-	0.00063	19.6	0.0	0.0012	18.7	0.0	1.4	2	0	0	2	2	2	1	HTH	domain
HxlR	PF01638.17	gi|257051188|ref|YP_003129021.1|	-	0.0048	16.7	0.1	0.0059	16.4	0.1	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
DprA_WH	PF17782.1	gi|257051188|ref|YP_003129021.1|	-	0.0053	16.8	0.0	0.009	16.1	0.0	1.3	1	0	0	1	1	1	1	DprA	winged	helix	domain
HTH_34	PF13601.6	gi|257051188|ref|YP_003129021.1|	-	0.0088	16.2	0.0	0.01	16.0	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
Replic_Relax	PF13814.6	gi|257051188|ref|YP_003129021.1|	-	0.014	15.5	0.0	0.017	15.2	0.0	1.1	1	0	0	1	1	1	0	Replication-relaxation
HTH_41	PF14502.6	gi|257051188|ref|YP_003129021.1|	-	0.015	15.0	0.0	0.024	14.3	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF4364	PF14277.6	gi|257051188|ref|YP_003129021.1|	-	0.021	14.5	0.0	0.024	14.4	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
MarR	PF01047.22	gi|257051188|ref|YP_003129021.1|	-	0.03	14.2	0.0	0.04	13.8	0.0	1.3	1	0	0	1	1	1	0	MarR	family
Rrf2	PF02082.20	gi|257051188|ref|YP_003129021.1|	-	0.066	13.6	0.0	0.12	12.7	0.0	1.4	2	0	0	2	2	2	0	Transcriptional	regulator
FUR	PF01475.19	gi|257051188|ref|YP_003129021.1|	-	0.076	13.2	0.1	0.12	12.6	0.1	1.4	1	1	0	1	1	1	0	Ferric	uptake	regulator	family
TerD	PF02342.18	gi|257051188|ref|YP_003129021.1|	-	0.14	11.7	0.0	0.16	11.5	0.0	1.0	1	0	0	1	1	1	0	TerD	domain
DUF45	PF01863.17	gi|257051189|ref|YP_003129022.1|	-	3e-59	200.5	0.0	3.9e-59	200.2	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF45
WLM	PF08325.10	gi|257051189|ref|YP_003129022.1|	-	0.018	15.1	0.3	0.036	14.1	0.3	1.4	1	0	0	1	1	1	0	WLM	domain
Peptidase_M90	PF06167.12	gi|257051189|ref|YP_003129022.1|	-	0.028	14.0	0.0	0.058	13.0	0.0	1.4	1	1	0	1	1	1	0	Glucose-regulated	metallo-peptidase	M90
Importin_rep	PF18773.1	gi|257051189|ref|YP_003129022.1|	-	0.04	13.6	1.3	0.076	12.7	0.1	2.0	2	0	0	2	2	2	0	Importin	13	repeat
SprT-like	PF10263.9	gi|257051189|ref|YP_003129022.1|	-	0.098	12.5	0.3	0.17	11.7	0.3	1.5	1	1	0	1	1	1	0	SprT-like	family
SWI2_SNF2	PF18766.1	gi|257051190|ref|YP_003129023.1|	-	4.2e-56	190.1	0.1	1.4e-55	188.5	0.0	1.9	2	0	0	2	2	2	1	SWI2/SNF2	ATPase
HSDR_N	PF04313.14	gi|257051190|ref|YP_003129023.1|	-	1.2e-30	106.9	0.0	3.4e-30	105.5	0.0	1.8	1	0	0	1	1	1	1	Type	I	restriction	enzyme	R	protein	N	terminus	(HSDR_N)
ResIII	PF04851.15	gi|257051190|ref|YP_003129023.1|	-	2.6e-20	73.1	0.0	5.3e-20	72.1	0.0	1.6	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
DUF3387	PF11867.8	gi|257051190|ref|YP_003129023.1|	-	2.3e-12	46.9	5.0	6e-12	45.6	5.0	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3387)
DEAD	PF00270.29	gi|257051190|ref|YP_003129023.1|	-	9.5e-05	22.2	0.0	0.00065	19.5	0.0	2.4	3	0	0	3	3	3	1	DEAD/DEAH	box	helicase
DUF2075	PF09848.9	gi|257051190|ref|YP_003129023.1|	-	0.033	13.4	0.0	0.065	12.5	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
DUF5444	PF17519.2	gi|257051190|ref|YP_003129023.1|	-	0.11	12.6	0.0	0.32	11.0	0.0	1.8	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5444)
Methylase_S	PF01420.19	gi|257051191|ref|YP_003129024.1|	-	1.6e-24	87.0	0.0	5.6e-16	59.2	0.0	2.2	2	0	0	2	2	2	2	Type	I	restriction	modification	DNA	specificity	domain
N6_Mtase	PF02384.16	gi|257051192|ref|YP_003129025.1|	-	3.8e-83	279.3	0.0	4.9e-83	279.0	0.0	1.1	1	0	0	1	1	1	1	N-6	DNA	Methylase
HsdM_N	PF12161.8	gi|257051192|ref|YP_003129025.1|	-	4.9e-24	85.5	0.1	4.9e-24	85.5	0.1	2.6	3	1	0	3	3	3	1	HsdM	N-terminal	domain
UPF0020	PF01170.18	gi|257051192|ref|YP_003129025.1|	-	2e-06	27.6	0.0	5.4e-06	26.2	0.0	1.8	1	1	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Nas2_N	PF18265.1	gi|257051192|ref|YP_003129025.1|	-	0.12	12.3	1.1	0.38	10.7	0.4	2.2	2	0	0	2	2	2	0	Nas2	N_terminal	domain
HTH_23	PF13384.6	gi|257051193|ref|YP_003129026.1|	-	3.3e-06	26.7	0.4	9e-06	25.3	0.0	1.9	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_11	PF08279.12	gi|257051193|ref|YP_003129026.1|	-	0.00033	20.5	0.0	0.00094	19.1	0.0	1.7	1	0	0	1	1	1	1	HTH	domain
HTH_29	PF13551.6	gi|257051193|ref|YP_003129026.1|	-	0.00051	20.0	0.3	0.0013	18.7	0.0	1.8	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_17	PF12728.7	gi|257051193|ref|YP_003129026.1|	-	0.0059	16.8	0.0	0.012	15.8	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
Terminase_5	PF06056.12	gi|257051193|ref|YP_003129026.1|	-	0.0074	16.1	2.0	0.099	12.5	0.2	2.4	2	0	0	2	2	2	1	Putative	ATPase	subunit	of	terminase	(gpP-like)
HTH_7	PF02796.15	gi|257051193|ref|YP_003129026.1|	-	0.01	15.9	0.0	0.026	14.6	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
HTH_32	PF13565.6	gi|257051193|ref|YP_003129026.1|	-	0.011	16.4	0.2	0.036	14.7	0.0	2.0	2	0	0	2	2	2	0	Homeodomain-like	domain
HTH_22	PF13309.6	gi|257051193|ref|YP_003129026.1|	-	0.014	15.4	0.0	0.035	14.2	0.0	1.6	1	0	0	1	1	1	0	HTH	domain
DUF3791	PF12668.7	gi|257051193|ref|YP_003129026.1|	-	0.015	15.3	0.0	0.031	14.3	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3791)
Sigma70_r3	PF04539.16	gi|257051193|ref|YP_003129026.1|	-	0.023	14.8	0.1	0.083	13.0	0.1	1.9	1	0	0	1	1	1	0	Sigma-70	region	3
HTH_28	PF13518.6	gi|257051193|ref|YP_003129026.1|	-	0.036	14.2	0.0	0.076	13.2	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_3	PF01381.22	gi|257051193|ref|YP_003129026.1|	-	0.04	14.0	0.1	0.11	12.5	0.1	1.8	1	0	0	1	1	1	0	Helix-turn-helix
HTH_Tnp_1	PF01527.20	gi|257051193|ref|YP_003129026.1|	-	0.041	14.2	0.3	0.08	13.3	0.3	1.5	1	0	0	1	1	1	0	Transposase
Sigma70_r4_2	PF08281.12	gi|257051193|ref|YP_003129026.1|	-	0.067	12.9	0.9	0.19	11.4	0.0	2.0	2	0	0	2	2	2	0	Sigma-70,	region	4
UPF0122	PF04297.14	gi|257051193|ref|YP_003129026.1|	-	0.15	12.3	0.3	0.54	10.5	0.3	1.9	1	1	0	1	1	1	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
Prim-Pol	PF09250.11	gi|257051194|ref|YP_003129027.1|	-	3.1e-09	37.4	0.2	5.8e-09	36.5	0.2	1.5	1	0	0	1	1	1	1	Bifunctional	DNA	primase/polymerase,	N-terminal
DUF4314	PF14192.6	gi|257051196|ref|YP_003129029.1|	-	0.049	13.5	0.2	0.065	13.2	0.2	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4314)
Ribosomal_L21e	PF01157.18	gi|257051196|ref|YP_003129029.1|	-	0.14	12.1	0.0	0.24	11.3	0.0	1.4	1	0	0	1	1	1	0	Ribosomal	protein	L21e
DUF2387	PF09526.10	gi|257051197|ref|YP_003129030.1|	-	0.0004	20.5	2.4	0.00043	20.4	2.4	1.1	1	0	0	1	1	1	1	Probable	metal-binding	protein	(DUF2387)
Zn-ribbon_8	PF09723.10	gi|257051197|ref|YP_003129030.1|	-	0.0017	18.4	2.1	0.31	11.2	0.4	2.3	2	0	0	2	2	2	2	Zinc	ribbon	domain
PhnA_Zn_Ribbon	PF08274.12	gi|257051197|ref|YP_003129030.1|	-	0.0024	17.8	4.3	0.0074	16.2	0.9	2.1	2	0	0	2	2	2	1	PhnA	Zinc-Ribbon
zf-Dof	PF02701.15	gi|257051197|ref|YP_003129030.1|	-	0.0031	17.6	1.1	0.0041	17.2	1.1	1.2	1	0	0	1	1	1	1	Dof	domain,	zinc	finger
TFIIS_C	PF01096.18	gi|257051197|ref|YP_003129030.1|	-	0.0059	16.4	5.1	0.049	13.5	5.1	2.0	1	1	0	1	1	1	1	Transcription	factor	S-II	(TFIIS)
zf_UBZ	PF18439.1	gi|257051197|ref|YP_003129030.1|	-	0.0076	15.8	2.1	0.54	9.9	0.2	2.2	2	0	0	2	2	2	2	Ubiquitin-Binding	Zinc	Finger
zinc-ribbons_6	PF07191.12	gi|257051197|ref|YP_003129030.1|	-	0.041	13.9	2.1	0.083	12.9	2.1	1.5	1	1	0	1	1	1	0	zinc-ribbons
UPF0547	PF10571.9	gi|257051197|ref|YP_003129030.1|	-	0.1	12.7	7.2	1.8	8.7	0.9	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
DUF983	PF06170.12	gi|257051197|ref|YP_003129030.1|	-	0.15	12.5	0.7	1.7	9.1	0.1	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF983)
OrfB_Zn_ribbon	PF07282.11	gi|257051197|ref|YP_003129030.1|	-	0.15	12.0	4.3	0.3	11.0	4.3	1.5	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zf-C3HC4_2	PF13923.6	gi|257051197|ref|YP_003129030.1|	-	0.21	11.4	4.0	1.4	8.8	0.2	2.1	2	0	0	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
DUF4379	PF14311.6	gi|257051197|ref|YP_003129030.1|	-	1.3	9.5	8.8	0.98	9.8	2.5	2.2	2	1	0	2	2	2	0	Probable	Zinc-ribbon	domain
Phage_integrase	PF00589.22	gi|257051199|ref|YP_003129032.1|	-	2.8e-14	53.3	0.0	1.3e-13	51.1	0.0	1.9	1	1	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_1	PF02899.17	gi|257051199|ref|YP_003129032.1|	-	3.9e-05	23.9	0.0	0.0001	22.5	0.0	1.7	1	0	0	1	1	1	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_4	PF13495.6	gi|257051199|ref|YP_003129032.1|	-	0.01	16.3	0.0	0.022	15.2	0.0	1.5	1	0	0	1	1	1	0	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_5	PF13102.6	gi|257051199|ref|YP_003129032.1|	-	0.018	15.4	0.0	0.039	14.3	0.0	1.5	1	0	0	1	1	1	0	Phage	integrase	SAM-like	domain
VIT1	PF01988.19	gi|257051201|ref|YP_003129034.1|	-	1.2	9.0	8.4	1.2	8.9	8.4	1.1	1	0	0	1	1	1	0	VIT	family
MFS_1	PF07690.16	gi|257051202|ref|YP_003129035.1|	-	0.16	10.8	56.6	0.0061	15.5	28.0	2.4	1	1	1	2	2	2	0	Major	Facilitator	Superfamily
Bactofilin	PF04519.13	gi|257051203|ref|YP_003129036.1|	-	1.1e-06	28.8	6.2	1.9e-06	28.1	6.2	1.4	1	0	0	1	1	1	1	Polymer-forming	cytoskeletal
DUF2071	PF09844.9	gi|257051204|ref|YP_003129037.1|	-	6.5e-72	241.6	0.8	7.4e-72	241.4	0.8	1.0	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(COG2071)
ADC	PF06314.11	gi|257051204|ref|YP_003129037.1|	-	8.6e-10	38.6	0.1	1.1e-09	38.2	0.1	1.1	1	0	0	1	1	1	1	Acetoacetate	decarboxylase	(ADC)
DUF2835	PF11197.8	gi|257051204|ref|YP_003129037.1|	-	0.0069	16.2	0.0	0.041	13.7	0.0	2.1	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF2835)
DUF998	PF06197.13	gi|257051205|ref|YP_003129038.1|	-	2.1e-17	63.3	25.1	2.6e-17	63.0	25.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF998)
TraT	PF05818.12	gi|257051206|ref|YP_003129039.1|	-	0.13	11.9	2.1	0.17	11.5	2.1	1.2	1	0	0	1	1	1	0	Enterobacterial	TraT	complement	resistance	protein
DUF4191	PF13829.6	gi|257051206|ref|YP_003129039.1|	-	0.4	10.0	14.9	0.67	9.3	4.0	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4191)
DUF4407	PF14362.6	gi|257051206|ref|YP_003129039.1|	-	1.1	8.6	10.7	0.25	10.6	7.8	1.4	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4407)
YdjM	PF04307.14	gi|257051207|ref|YP_003129040.1|	-	1.2e-06	27.9	14.4	4e-05	23.0	14.4	2.4	1	1	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
NADH5_C	PF06455.11	gi|257051209|ref|YP_003129042.1|	-	8	6.0	7.3	0.35	10.4	0.3	2.2	2	0	0	2	2	2	0	NADH	dehydrogenase	subunit	5	C-terminus
ABC_tran	PF00005.27	gi|257051210|ref|YP_003129043.1|	-	2.9e-29	102.3	0.0	4.1e-29	101.9	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|257051210|ref|YP_003129043.1|	-	4.4e-15	56.3	0.3	2.1e-10	40.9	0.1	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_13	PF13166.6	gi|257051210|ref|YP_003129043.1|	-	0.0045	15.7	0.0	0.85	8.2	0.2	2.1	2	0	0	2	2	2	2	AAA	domain
AAA_23	PF13476.6	gi|257051210|ref|YP_003129043.1|	-	0.0067	17.0	0.0	0.0094	16.5	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_15	PF13175.6	gi|257051210|ref|YP_003129043.1|	-	0.0087	15.8	0.0	0.7	9.5	0.0	2.1	2	0	0	2	2	2	1	AAA	ATPase	domain
SMC_N	PF02463.19	gi|257051210|ref|YP_003129043.1|	-	0.04	13.3	0.0	6.2	6.2	0.0	2.1	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
AAA	PF00004.29	gi|257051210|ref|YP_003129043.1|	-	0.07	13.5	0.0	0.35	11.3	0.0	2.0	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_29	PF13555.6	gi|257051210|ref|YP_003129043.1|	-	0.074	12.8	0.1	0.14	12.0	0.1	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.6	gi|257051210|ref|YP_003129043.1|	-	0.15	12.3	0.1	0.32	11.3	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
MMR_HSR1	PF01926.23	gi|257051210|ref|YP_003129043.1|	-	0.17	11.9	0.0	0.88	9.7	0.0	2.1	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
Tetraspanin	PF00335.20	gi|257051211|ref|YP_003129044.1|	-	0.00092	19.0	0.1	0.0013	18.4	0.1	1.3	1	0	0	1	1	1	1	Tetraspanin	family
SdpI	PF13630.6	gi|257051212|ref|YP_003129045.1|	-	2e-15	56.7	1.6	2e-15	56.7	1.6	3.2	3	0	0	3	3	3	2	SdpI/YhfL	protein	family
DUF1648	PF07853.11	gi|257051212|ref|YP_003129045.1|	-	3.7e-15	55.3	0.3	3.7e-15	55.3	0.3	3.1	3	0	0	3	3	3	1	Protein	of	unknown	function	(DUF1648)
PhoR	PF11808.8	gi|257051212|ref|YP_003129045.1|	-	0.2	12.1	9.0	0.23	11.9	0.1	3.1	3	0	0	3	3	3	0	Phosphate	regulon	sensor	protein	PhoR
DUF2518	PF10726.9	gi|257051212|ref|YP_003129045.1|	-	2.3	7.9	5.5	0.29	10.8	0.9	1.9	2	0	0	2	2	2	0	Protein	of	function	(DUF2518)
DUF5624	PF18538.1	gi|257051213|ref|YP_003129046.1|	-	0.066	13.3	2.1	0.15	12.2	0.1	2.2	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF5624)
FlaC_arch	PF05377.11	gi|257051213|ref|YP_003129046.1|	-	1.5	9.3	4.4	21	5.6	0.2	2.9	3	0	0	3	3	3	0	Flagella	accessory	protein	C	(FlaC)
VIT1	PF01988.19	gi|257051215|ref|YP_003129048.1|	-	0.066	13.1	1.9	0.072	12.9	1.9	1.0	1	0	0	1	1	1	0	VIT	family
MMR_HSR1_C	PF08438.10	gi|257051216|ref|YP_003129049.1|	-	2.4e-27	95.7	0.0	3.7e-27	95.1	0.0	1.3	1	0	0	1	1	1	1	GTPase	of	unknown	function	C-terminal
MMR_HSR1	PF01926.23	gi|257051216|ref|YP_003129049.1|	-	3e-19	69.2	0.0	1.2e-18	67.2	0.0	2.0	3	0	0	3	3	3	1	50S	ribosome-binding	GTPase
TGS	PF02824.21	gi|257051216|ref|YP_003129049.1|	-	2.5e-10	40.2	0.0	5.3e-10	39.2	0.0	1.6	1	0	0	1	1	1	1	TGS	domain
FeoB_N	PF02421.18	gi|257051216|ref|YP_003129049.1|	-	1.4e-05	24.7	0.0	0.00018	21.1	0.0	2.5	3	0	0	3	3	3	1	Ferrous	iron	transport	protein	B
YchF-GTPase_C	PF06071.13	gi|257051216|ref|YP_003129049.1|	-	0.091	13.0	0.0	0.23	11.7	0.0	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF933)
MeaB	PF03308.16	gi|257051216|ref|YP_003129049.1|	-	0.15	11.0	0.0	0.24	10.4	0.0	1.3	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
Dynamin_N	PF00350.23	gi|257051216|ref|YP_003129049.1|	-	0.16	12.0	0.1	1	9.4	0.0	2.2	3	0	0	3	3	3	0	Dynamin	family
TP6A_N	PF04406.14	gi|257051217|ref|YP_003129050.1|	-	1.2e-14	54.0	0.5	2.1e-14	53.2	0.5	1.4	1	0	0	1	1	1	1	Type	IIB	DNA	topoisomerase
Topo-VIb_trans	PF09239.11	gi|257051218|ref|YP_003129051.1|	-	1.8e-62	209.8	0.0	9.3e-62	207.5	0.0	2.1	2	0	0	2	2	2	1	Topoisomerase	VI	B	subunit,	transducer
Top6b_C	PF18000.1	gi|257051218|ref|YP_003129051.1|	-	5.2e-33	113.6	1.8	1.6e-32	112.1	1.8	1.9	1	0	0	1	1	1	1	Type	2	DNA	topoisomerase	6	subunit	B	C-terminal	domain
HATPase_c_3	PF13589.6	gi|257051218|ref|YP_003129051.1|	-	1.2e-11	44.5	0.0	3.2e-11	43.2	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c	PF02518.26	gi|257051218|ref|YP_003129051.1|	-	2.8e-11	43.9	0.0	1e-10	42.1	0.0	2.0	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Regulator_TrmB	PF11495.8	gi|257051219|ref|YP_003129052.1|	-	1.7e-50	171.4	0.4	2.3e-50	171.0	0.4	1.2	1	0	0	1	1	1	1	Archaeal	transcriptional	regulator	TrmB
TrmB	PF01978.19	gi|257051219|ref|YP_003129052.1|	-	1.2e-16	60.3	0.0	3.8e-16	58.7	0.0	1.9	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|257051219|ref|YP_003129052.1|	-	0.00034	20.5	0.0	0.00094	19.0	0.0	1.7	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.12	gi|257051219|ref|YP_003129052.1|	-	0.00065	19.6	0.1	0.013	15.5	0.0	2.6	2	0	0	2	2	2	1	HTH	domain
Rrf2	PF02082.20	gi|257051219|ref|YP_003129052.1|	-	0.0017	18.6	0.0	0.0042	17.4	0.0	1.6	1	0	0	1	1	1	1	Transcriptional	regulator
Actin_micro	PF17003.5	gi|257051219|ref|YP_003129052.1|	-	0.0041	16.4	0.0	0.0059	15.8	0.0	1.1	1	0	0	1	1	1	1	Putative	actin-like	family
HTH_36	PF13730.6	gi|257051219|ref|YP_003129052.1|	-	0.0041	17.0	0.0	0.16	11.9	0.0	2.5	1	1	1	2	2	2	1	Helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|257051219|ref|YP_003129052.1|	-	0.0052	16.6	0.0	0.024	14.5	0.0	2.1	2	1	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.6	gi|257051219|ref|YP_003129052.1|	-	0.0056	16.2	0.0	0.0099	15.4	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|257051219|ref|YP_003129052.1|	-	0.053	13.5	0.0	0.099	12.6	0.0	1.5	1	0	0	1	1	1	0	MarR	family
Cdc6_C	PF09079.11	gi|257051219|ref|YP_003129052.1|	-	0.054	13.5	0.0	0.26	11.3	0.0	2.2	2	1	1	3	3	3	0	CDC6,	C	terminal	winged	helix	domain
FokI_C	PF02980.16	gi|257051219|ref|YP_003129052.1|	-	0.061	13.3	0.0	0.11	12.5	0.0	1.3	1	0	0	1	1	1	0	Restriction	endonuclease	FokI,	catalytic	domain
FaeA	PF04703.12	gi|257051219|ref|YP_003129052.1|	-	0.18	12.2	0.0	0.46	10.9	0.0	1.7	1	1	0	1	1	1	0	FaeA-like	protein
DNA_gyraseB	PF00204.25	gi|257051220|ref|YP_003129053.1|	-	9.2e-61	204.3	1.1	1.8e-60	203.4	1.1	1.5	1	0	0	1	1	1	1	DNA	gyrase	B
DNA_gyraseB_C	PF00986.21	gi|257051220|ref|YP_003129053.1|	-	1.5e-29	101.9	0.0	3.3e-29	100.9	0.0	1.6	1	0	0	1	1	1	1	DNA	gyrase	B	subunit,	carboxyl	terminus
HATPase_c	PF02518.26	gi|257051220|ref|YP_003129053.1|	-	3.4e-25	88.7	0.1	8.7e-25	87.4	0.1	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Toprim	PF01751.22	gi|257051220|ref|YP_003129053.1|	-	2.4e-18	66.2	0.1	8.8e-18	64.4	0.0	2.0	2	0	0	2	2	2	1	Toprim	domain
HATPase_c_3	PF13589.6	gi|257051220|ref|YP_003129053.1|	-	3.1e-05	23.8	0.0	7.4e-05	22.6	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
F5_F8_type_C	PF00754.25	gi|257051220|ref|YP_003129053.1|	-	0.14	12.3	0.1	0.39	10.8	0.0	1.8	2	0	0	2	2	2	0	F5/8	type	C	domain
DNA_topoisoIV	PF00521.20	gi|257051221|ref|YP_003129054.1|	-	1.2e-156	521.9	0.0	1.5e-156	521.6	0.0	1.1	1	0	0	1	1	1	1	DNA	gyrase/topoisomerase	IV,	subunit	A
DNA_gyraseA_C	PF03989.13	gi|257051221|ref|YP_003129054.1|	-	2.6e-71	234.9	7.0	3.1e-12	45.8	0.0	6.4	6	0	0	6	6	6	6	DNA	gyrase	C-terminal	domain,	beta-propeller
IKI3	PF04762.12	gi|257051221|ref|YP_003129054.1|	-	0.0088	14.1	0.5	0.086	10.8	0.0	2.2	1	1	0	2	2	2	1	IKI3	family
Nnf1	PF03980.14	gi|257051221|ref|YP_003129054.1|	-	0.012	16.0	3.3	0.28	11.6	2.1	2.5	2	0	0	2	2	2	0	Nnf1
TBCC_N	PF16752.5	gi|257051221|ref|YP_003129054.1|	-	0.036	14.5	1.5	0.072	13.5	1.5	1.4	1	0	0	1	1	1	0	Tubulin-specific	chaperone	C	N-terminal	domain
Integrase_Zn	PF02022.19	gi|257051221|ref|YP_003129054.1|	-	0.23	11.4	0.1	0.4	10.7	0.1	1.4	1	0	0	1	1	1	0	Integrase	Zinc	binding	domain
THOC7	PF05615.13	gi|257051221|ref|YP_003129054.1|	-	0.37	11.1	5.0	0.82	9.9	5.0	1.5	1	0	0	1	1	1	0	Tho	complex	subunit	7
DUF465	PF04325.13	gi|257051221|ref|YP_003129054.1|	-	0.87	9.7	5.1	2.7	8.1	5.1	1.8	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF465)
DUF5518	PF17647.1	gi|257051222|ref|YP_003129055.1|	-	0.00022	21.4	21.5	0.00027	21.1	21.5	1.1	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF5518)
Transgly_assoc	PF04226.13	gi|257051222|ref|YP_003129055.1|	-	0.24	11.7	11.9	0.86	9.9	0.0	3.7	3	1	1	4	4	4	0	Transglycosylase	associated	protein
PT-VENN	PF04829.13	gi|257051222|ref|YP_003129055.1|	-	2.6	8.2	5.5	0.46	10.6	0.4	2.4	2	1	1	3	3	3	0	Pre-toxin	domain	with	VENN	motif
DUF5518	PF17647.1	gi|257051223|ref|YP_003129056.1|	-	8.9e-07	29.1	25.3	1e-06	28.9	25.3	1.0	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF5518)
Phage_holin_3_6	PF07332.11	gi|257051223|ref|YP_003129056.1|	-	0.22	11.6	10.3	0.4	10.7	4.3	2.1	2	0	0	2	2	2	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
OrfB_Zn_ribbon	PF07282.11	gi|257051224|ref|YP_003129057.1|	-	5.1e-18	64.8	9.1	2.3e-17	62.7	6.1	3.0	2	1	0	2	2	2	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|257051224|ref|YP_003129057.1|	-	6.4e-08	32.8	0.1	1.6e-07	31.5	0.1	1.7	1	0	0	1	1	1	1	Probable	transposase
PAS_7	PF12860.7	gi|257051224|ref|YP_003129057.1|	-	0.14	12.3	1.6	0.2	11.9	0.4	1.8	2	0	0	2	2	2	0	PAS	fold
PocR	PF10114.9	gi|257051224|ref|YP_003129057.1|	-	0.41	10.4	2.3	0.79	9.5	0.0	2.3	2	0	0	2	2	2	0	Sensory	domain	found	in	PocR
zinc_ribbon_2	PF13240.6	gi|257051224|ref|YP_003129057.1|	-	4	7.3	11.1	0.77	9.6	6.0	2.4	2	1	1	3	3	3	0	zinc-ribbon	domain
DUF5518	PF17647.1	gi|257051225|ref|YP_003129058.1|	-	0.00056	20.0	21.4	0.00069	19.7	12.7	2.3	2	0	0	2	2	2	2	Family	of	unknown	function	(DUF5518)
DUF2232	PF09991.9	gi|257051225|ref|YP_003129058.1|	-	0.14	11.3	4.7	0.21	10.7	4.7	1.3	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2232)
UbiA	PF01040.18	gi|257051225|ref|YP_003129058.1|	-	0.6	9.4	13.9	0.051	12.9	8.5	1.7	2	0	0	2	2	2	0	UbiA	prenyltransferase	family
ThrE	PF06738.12	gi|257051225|ref|YP_003129058.1|	-	0.69	9.2	5.9	0.049	13.0	0.9	1.7	2	0	0	2	2	2	0	Putative	threonine/serine	exporter
7TM-7TMR_HD	PF07698.11	gi|257051225|ref|YP_003129058.1|	-	0.95	9.2	9.0	0.055	13.2	2.8	1.8	2	0	0	2	2	2	0	7TM	receptor	with	intracellular	HD	hydrolase
DUF211	PF02680.14	gi|257051226|ref|YP_003129059.1|	-	4.9e-34	116.3	1.9	5.5e-34	116.2	1.9	1.0	1	0	0	1	1	1	1	Uncharacterized	ArCR,	COG1888
PilN	PF05137.13	gi|257051226|ref|YP_003129059.1|	-	0.017	15.2	0.1	0.02	15.0	0.1	1.4	1	1	0	1	1	1	0	Fimbrial	assembly	protein	(PilN)
VIT1	PF01988.19	gi|257051227|ref|YP_003129060.1|	-	1e-10	41.9	9.0	1.1e-10	41.8	1.7	2.1	2	0	0	2	2	2	2	VIT	family
UPF0016	PF01169.19	gi|257051227|ref|YP_003129060.1|	-	0.24	11.8	11.7	0.91	9.9	3.1	2.8	2	1	0	2	2	2	0	Uncharacterized	protein	family	UPF0016
GSDH	PF07995.11	gi|257051228|ref|YP_003129061.1|	-	4.5e-35	121.5	0.0	5.9e-35	121.1	0.0	1.2	1	0	0	1	1	1	1	Glucose	/	Sorbosone	dehydrogenase
PUA	PF01472.20	gi|257051229|ref|YP_003129062.1|	-	2.8e-16	59.2	2.1	5.5e-16	58.3	2.1	1.5	1	0	0	1	1	1	1	PUA	domain
UPF0113	PF03657.13	gi|257051229|ref|YP_003129062.1|	-	0.00048	20.3	0.1	0.00078	19.7	0.1	1.3	1	0	0	1	1	1	1	UPF0113	PUA	domain
RNB	PF00773.19	gi|257051230|ref|YP_003129063.1|	-	2.1e-81	273.8	0.0	3.9e-80	269.6	0.0	2.0	1	1	0	1	1	1	1	RNB	domain
Clp_N	PF02861.20	gi|257051230|ref|YP_003129063.1|	-	0.0014	18.7	0.6	7	6.9	0.2	3.5	3	0	0	3	3	3	2	Clp	amino	terminal	domain,	pathogenicity	island	component
SQS_PSY	PF00494.19	gi|257051231|ref|YP_003129064.1|	-	5.4e-58	196.6	10.1	6.8e-58	196.2	10.1	1.0	1	0	0	1	1	1	1	Squalene/phytoene	synthase
EF-hand_7	PF13499.6	gi|257051231|ref|YP_003129064.1|	-	0.026	15.0	0.2	0.061	13.8	0.2	1.6	1	0	0	1	1	1	0	EF-hand	domain	pair
SepF	PF04472.12	gi|257051232|ref|YP_003129065.1|	-	4.7e-14	52.4	1.1	5.9e-14	52.1	1.1	1.1	1	0	0	1	1	1	1	Cell	division	protein	SepF
ATP-grasp_3	PF02655.14	gi|257051232|ref|YP_003129065.1|	-	0.011	15.7	0.1	0.015	15.3	0.1	1.1	1	0	0	1	1	1	0	ATP-grasp	domain
Lar_N	PF09861.9	gi|257051232|ref|YP_003129065.1|	-	0.026	13.7	0.1	0.031	13.4	0.1	1.2	1	0	0	1	1	1	0	Lactate	racemase	N-terminal	domain
DUF5611	PF18446.1	gi|257051233|ref|YP_003129066.1|	-	5.8e-25	88.1	0.0	6.6e-25	87.9	0.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5611)
DUF4989	PF16379.5	gi|257051233|ref|YP_003129066.1|	-	0.0077	15.6	0.0	0.0077	15.6	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4989)
DUF5517	PF17639.2	gi|257051233|ref|YP_003129066.1|	-	0.11	12.8	0.0	0.14	12.4	0.0	1.4	1	1	0	1	1	1	0	Family	of	unknown	function	(DUF5517)
Zn-ribbon_8	PF09723.10	gi|257051234|ref|YP_003129067.1|	-	0.0013	18.8	5.1	0.012	15.7	1.7	2.5	2	0	0	2	2	2	1	Zinc	ribbon	domain
Zn_ribbon_SprT	PF17283.2	gi|257051234|ref|YP_003129067.1|	-	0.0037	17.1	1.1	0.11	12.4	0.2	2.2	2	0	0	2	2	2	1	SprT-like	zinc	ribbon	domain
HypA	PF01155.19	gi|257051234|ref|YP_003129067.1|	-	0.0096	15.9	3.0	0.11	12.5	0.2	2.2	2	0	0	2	2	2	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc-ribbons_6	PF07191.12	gi|257051234|ref|YP_003129067.1|	-	0.031	14.3	0.8	0.2	11.6	0.1	2.1	2	0	0	2	2	2	0	zinc-ribbons
DUF1451	PF07295.11	gi|257051234|ref|YP_003129067.1|	-	0.052	13.6	0.9	0.55	10.3	0.1	2.4	2	0	0	2	2	2	0	Zinc-ribbon	containing	domain
RNHCP	PF12647.7	gi|257051234|ref|YP_003129067.1|	-	0.068	13.1	1.6	0.24	11.4	0.2	2.2	2	0	0	2	2	2	0	RNHCP	domain
DZR	PF12773.7	gi|257051234|ref|YP_003129067.1|	-	0.07	13.2	1.1	1.9	8.6	0.2	2.3	2	0	0	2	2	2	0	Double	zinc	ribbon
zf_UBZ	PF18439.1	gi|257051234|ref|YP_003129067.1|	-	0.58	9.8	5.0	33	4.2	0.1	3.2	3	0	0	3	3	3	0	Ubiquitin-Binding	Zinc	Finger
Rubredoxin_2	PF18073.1	gi|257051234|ref|YP_003129067.1|	-	0.7	9.7	0.1	0.7	9.7	0.1	3.2	3	0	0	3	3	3	0	Rubredoxin	metal	binding	domain
zf-IS66	PF13005.7	gi|257051234|ref|YP_003129067.1|	-	1	9.8	5.3	16	6.0	0.2	3.4	3	0	0	3	3	3	0	zinc-finger	binding	domain	of	transposase	IS66
TF_Zn_Ribbon	PF08271.12	gi|257051234|ref|YP_003129067.1|	-	4.2	7.0	8.3	10	5.7	0.5	3.9	3	0	0	3	3	3	0	TFIIB	zinc-binding
MarR_2	PF12802.7	gi|257051235|ref|YP_003129068.1|	-	0.0057	16.5	0.5	0.0091	15.9	0.5	1.3	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|257051235|ref|YP_003129068.1|	-	0.018	15.1	0.5	0.027	14.5	0.5	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
Rrf2	PF02082.20	gi|257051235|ref|YP_003129068.1|	-	0.11	12.9	0.0	0.16	12.4	0.0	1.2	1	0	0	1	1	1	0	Transcriptional	regulator
ThiF	PF00899.21	gi|257051238|ref|YP_003129071.1|	-	3.8e-64	216.4	0.0	4.9e-64	216.0	0.0	1.0	1	0	0	1	1	1	1	ThiF	family
DapB_N	PF01113.20	gi|257051238|ref|YP_003129071.1|	-	0.038	14.1	1.5	0.22	11.7	1.5	2.1	1	1	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
Shikimate_DH	PF01488.20	gi|257051238|ref|YP_003129071.1|	-	0.1	12.7	0.3	5.7	7.0	0.1	2.3	1	1	0	2	2	2	0	Shikimate	/	quinate	5-dehydrogenase
PglD_N	PF17836.1	gi|257051238|ref|YP_003129071.1|	-	0.12	13.0	0.0	0.22	12.2	0.0	1.5	1	0	0	1	1	1	0	PglD	N-terminal	domain
Yip1	PF04893.17	gi|257051239|ref|YP_003129072.1|	-	6.7e-12	45.5	15.0	7.9e-12	45.2	15.0	1.0	1	0	0	1	1	1	1	Yip1	domain
TcpE	PF12648.7	gi|257051239|ref|YP_003129072.1|	-	0.9	10.1	8.2	0.7	10.5	4.1	2.3	1	1	1	2	2	2	0	TcpE	family
DUF2512	PF10710.9	gi|257051239|ref|YP_003129072.1|	-	2.7	7.7	8.8	5.5	6.7	2.4	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2512)
Phage_holin_3_6	PF07332.11	gi|257051239|ref|YP_003129072.1|	-	3	7.9	16.2	0.042	13.9	4.3	2.3	2	1	0	2	2	2	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
Peptidase_M32	PF02074.15	gi|257051240|ref|YP_003129073.1|	-	9.7e-173	575.4	0.0	1.1e-172	575.2	0.0	1.0	1	0	0	1	1	1	1	Carboxypeptidase	Taq	(M32)	metallopeptidase
RHH_1	PF01402.21	gi|257051241|ref|YP_003129074.1|	-	0.22	11.5	1.9	0.34	10.9	0.0	2.2	3	0	0	3	3	3	0	Ribbon-helix-helix	protein,	copG	family
Phage_integrase	PF00589.22	gi|257051242|ref|YP_003129075.1|	-	1e-14	54.7	0.0	2.5e-14	53.4	0.0	1.6	1	1	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_1	PF02899.17	gi|257051242|ref|YP_003129075.1|	-	3e-09	37.0	0.5	5.7e-09	36.1	0.5	1.5	1	0	0	1	1	1	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_4	PF13495.6	gi|257051242|ref|YP_003129075.1|	-	0.00025	21.4	0.7	0.001	19.5	0.7	1.9	1	1	0	1	1	1	1	Phage	integrase,	N-terminal	SAM-like	domain
Glyco_hydro_3	PF00933.21	gi|257051243|ref|YP_003129076.1|	-	1.9e-75	254.2	0.0	2.5e-75	253.8	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	N	terminal	domain
Glyco_hydro_3_C	PF01915.22	gi|257051243|ref|YP_003129076.1|	-	2.4e-52	177.9	0.0	3.7e-52	177.3	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	C-terminal	domain
Fn3-like	PF14310.6	gi|257051243|ref|YP_003129076.1|	-	4.1e-21	74.9	0.0	1.1e-20	73.5	0.0	1.8	1	0	0	1	1	1	1	Fibronectin	type	III-like	domain
HyaE	PF07449.11	gi|257051243|ref|YP_003129076.1|	-	0.069	13.1	0.0	0.16	11.9	0.0	1.6	1	0	0	1	1	1	0	Hydrogenase-1	expression	protein	HyaE
Bac_rhamnosid6H	PF17389.2	gi|257051244|ref|YP_003129077.1|	-	2.6e-101	339.3	0.0	3.8e-101	338.7	0.0	1.3	1	0	0	1	1	1	1	Bacterial	alpha-L-rhamnosidase	6	hairpin	glycosidase	domain
Bac_rhamnosid_N	PF08531.10	gi|257051244|ref|YP_003129077.1|	-	1.7e-51	174.4	0.6	3.4e-51	173.5	0.0	1.8	2	0	0	2	2	2	1	Alpha-L-rhamnosidase	N-terminal	domain
Bac_rhamnosid	PF05592.11	gi|257051244|ref|YP_003129077.1|	-	1.5e-28	98.8	0.0	3e-28	97.8	0.0	1.5	1	0	0	1	1	1	1	Bacterial	alpha-L-rhamnosidase	concanavalin-like	domain
Bac_rhamnosid_C	PF17390.2	gi|257051244|ref|YP_003129077.1|	-	6.8e-16	57.8	0.0	1.5e-15	56.7	0.0	1.6	1	0	0	1	1	1	1	Bacterial	alpha-L-rhamnosidase	C-terminal	domain
F5_F8_type_C	PF00754.25	gi|257051244|ref|YP_003129077.1|	-	0.00038	20.6	7.8	0.0013	18.8	0.5	3.8	4	1	0	4	4	4	1	F5/8	type	C	domain
UxaE	PF16257.5	gi|257051245|ref|YP_003129078.1|	-	7.1e-172	572.3	0.0	8e-172	572.2	0.0	1.0	1	0	0	1	1	1	1	tagaturonate	epimerase
DUF5427	PF10310.9	gi|257051245|ref|YP_003129078.1|	-	0.13	11.2	0.0	0.19	10.6	0.0	1.2	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5427)
UxaC	PF02614.14	gi|257051246|ref|YP_003129079.1|	-	3.8e-147	490.9	0.0	4.3e-147	490.7	0.0	1.0	1	0	0	1	1	1	1	Glucuronate	isomerase
Glyco_hydro_4	PF02056.16	gi|257051247|ref|YP_003129080.1|	-	1.3e-49	168.3	0.0	1.8e-49	167.8	0.0	1.2	1	0	0	1	1	1	1	Family	4	glycosyl	hydrolase
Glyco_hydro_4C	PF11975.8	gi|257051247|ref|YP_003129080.1|	-	1.1e-43	149.7	0.0	1.7e-43	149.1	0.0	1.3	1	0	0	1	1	1	1	Family	4	glycosyl	hydrolase	C-terminal	domain
Ldh_1_N	PF00056.23	gi|257051247|ref|YP_003129080.1|	-	0.00077	19.6	0.0	0.28	11.3	0.0	2.3	2	0	0	2	2	2	2	lactate/malate	dehydrogenase,	NAD	binding	domain
OCD_Mu_crystall	PF02423.15	gi|257051247|ref|YP_003129080.1|	-	0.082	11.8	0.0	0.17	10.8	0.0	1.4	1	0	0	1	1	1	0	Ornithine	cyclodeaminase/mu-crystallin	family
PQQ_2	PF13360.6	gi|257051248|ref|YP_003129081.1|	-	4e-27	95.3	17.8	7e-12	45.4	3.1	4.0	2	1	2	4	4	4	4	PQQ-like	domain
PQQ	PF01011.21	gi|257051248|ref|YP_003129081.1|	-	2.2e-16	58.9	6.3	0.0033	17.3	0.0	7.5	7	0	0	7	7	7	4	PQQ	enzyme	repeat
PQQ_3	PF13570.6	gi|257051248|ref|YP_003129081.1|	-	1e-15	57.6	40.9	0.001	19.5	0.1	9.0	8	1	0	8	8	8	8	PQQ-like	domain
ABC_tran	PF00005.27	gi|257051249|ref|YP_003129082.1|	-	1.1e-29	103.6	0.0	1.6e-29	103.2	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|257051249|ref|YP_003129082.1|	-	7.7e-10	39.1	0.0	6.4e-05	22.9	0.0	2.1	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|257051249|ref|YP_003129082.1|	-	1.1e-05	24.9	0.0	0.039	13.4	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_28	PF13521.6	gi|257051249|ref|YP_003129082.1|	-	0.0011	19.2	0.1	0.0094	16.2	0.1	2.3	1	1	0	1	1	1	1	AAA	domain
AAA_25	PF13481.6	gi|257051249|ref|YP_003129082.1|	-	0.0013	18.4	0.1	0.0047	16.5	0.1	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|257051249|ref|YP_003129082.1|	-	0.0014	18.4	0.1	0.0024	17.6	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
IstB_IS21	PF01695.17	gi|257051249|ref|YP_003129082.1|	-	0.0021	17.8	0.0	0.66	9.7	0.0	2.3	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
AAA_24	PF13479.6	gi|257051249|ref|YP_003129082.1|	-	0.0032	17.2	0.0	0.0056	16.4	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_23	PF13476.6	gi|257051249|ref|YP_003129082.1|	-	0.0067	16.9	0.0	0.01	16.3	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|257051249|ref|YP_003129082.1|	-	0.011	15.7	0.1	0.027	14.4	0.0	1.6	2	0	0	2	2	2	0	RsgA	GTPase
AAA_16	PF13191.6	gi|257051249|ref|YP_003129082.1|	-	0.011	16.1	0.4	0.024	15.0	0.4	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_30	PF13604.6	gi|257051249|ref|YP_003129082.1|	-	0.022	14.5	0.0	0.034	13.9	0.0	1.4	1	1	0	1	1	1	0	AAA	domain
MMR_HSR1	PF01926.23	gi|257051249|ref|YP_003129082.1|	-	0.024	14.7	0.0	0.094	12.8	0.0	1.9	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
SbcCD_C	PF13558.6	gi|257051249|ref|YP_003129082.1|	-	0.036	14.3	1.3	0.28	11.4	1.3	2.2	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
DLIC	PF05783.11	gi|257051249|ref|YP_003129082.1|	-	0.061	12.2	0.0	0.09	11.6	0.0	1.2	1	0	0	1	1	1	0	Dynein	light	intermediate	chain	(DLIC)
AAA_18	PF13238.6	gi|257051249|ref|YP_003129082.1|	-	0.089	13.3	0.0	0.85	10.2	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_33	PF13671.6	gi|257051249|ref|YP_003129082.1|	-	0.089	13.0	0.3	1.1	9.4	0.3	2.2	1	1	0	1	1	1	0	AAA	domain
CbiQ	PF02361.16	gi|257051250|ref|YP_003129083.1|	-	3.5e-30	105.3	13.6	4.7e-30	104.8	13.6	1.1	1	0	0	1	1	1	1	Cobalt	transport	protein
CbiM	PF01891.16	gi|257051251|ref|YP_003129084.1|	-	1.7e-54	184.8	26.0	1.7e-54	184.8	26.0	2.0	2	0	0	2	2	2	1	Cobalt	uptake	substrate-specific	transmembrane	region
PDGLE	PF13190.6	gi|257051251|ref|YP_003129084.1|	-	1.2e-07	31.5	0.3	1.2e-07	31.5	0.3	3.7	2	1	2	4	4	4	1	PDGLE	domain
NikR_C	PF08753.11	gi|257051252|ref|YP_003129085.1|	-	3.1e-25	88.1	4.9	4.4e-25	87.6	4.9	1.2	1	0	0	1	1	1	1	NikR	C	terminal	nickel	binding	domain
RHH_1	PF01402.21	gi|257051252|ref|YP_003129085.1|	-	1.4e-06	28.0	0.1	2.8e-05	23.9	0.0	2.4	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
DUF4013	PF13197.6	gi|257051254|ref|YP_003129087.1|	-	0.0048	16.8	1.5	0.0056	16.5	1.5	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF4013)
DUF4212	PF13937.6	gi|257051254|ref|YP_003129087.1|	-	0.039	14.3	2.1	0.047	14.1	2.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4212)
Amino_oxidase	PF01593.24	gi|257051255|ref|YP_003129088.1|	-	5.5e-17	62.2	3.0	1.9e-11	43.9	0.9	2.0	1	1	1	2	2	2	2	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.6	gi|257051255|ref|YP_003129088.1|	-	1.3e-12	47.7	0.1	3.1e-12	46.5	0.1	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|257051255|ref|YP_003129088.1|	-	1.2e-08	34.9	5.2	3.3e-07	30.2	0.8	2.2	1	1	1	2	2	2	2	FAD	dependent	oxidoreductase
NAD_binding_9	PF13454.6	gi|257051255|ref|YP_003129088.1|	-	0.00021	21.3	1.5	0.34	10.9	0.1	2.4	2	0	0	2	2	2	2	FAD-NAD(P)-binding
Pyr_redox_2	PF07992.14	gi|257051255|ref|YP_003129088.1|	-	0.0019	17.5	1.3	0.0041	16.4	1.3	1.5	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.7	gi|257051255|ref|YP_003129088.1|	-	0.032	13.6	0.4	0.04	13.2	0.4	1.2	1	0	0	1	1	1	0	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.6	gi|257051255|ref|YP_003129088.1|	-	0.033	13.4	1.1	7	5.8	1.4	2.1	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Trp_halogenase	PF04820.14	gi|257051255|ref|YP_003129088.1|	-	0.052	12.4	1.0	0.089	11.6	1.0	1.3	1	0	0	1	1	1	0	Tryptophan	halogenase
AlaDh_PNT_C	PF01262.21	gi|257051255|ref|YP_003129088.1|	-	0.084	12.2	0.1	0.12	11.6	0.1	1.2	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
HI0933_like	PF03486.14	gi|257051255|ref|YP_003129088.1|	-	0.16	10.6	2.1	3.1	6.4	2.0	2.0	2	0	0	2	2	2	0	HI0933-like	protein
Thi4	PF01946.17	gi|257051255|ref|YP_003129088.1|	-	0.18	11.1	0.7	0.29	10.4	0.7	1.3	1	0	0	1	1	1	0	Thi4	family
GIDA	PF01134.22	gi|257051255|ref|YP_003129088.1|	-	2.9	6.9	4.3	2.1	7.3	2.9	1.5	2	0	0	2	2	2	0	Glucose	inhibited	division	protein	A
FAD_binding_2	PF00890.24	gi|257051255|ref|YP_003129088.1|	-	7.6	5.5	8.4	1.9	7.4	3.1	2.1	2	1	0	2	2	2	0	FAD	binding	domain
NucS	PF01939.16	gi|257051256|ref|YP_003129089.1|	-	7.8e-62	208.6	0.0	9.3e-62	208.4	0.0	1.1	1	0	0	1	1	1	1	Endonuclease	NucS
YhcG_C	PF06250.11	gi|257051256|ref|YP_003129089.1|	-	0.00088	19.1	0.0	0.0014	18.4	0.0	1.3	1	0	0	1	1	1	1	YhcG	PDDEXK	nuclease	domain
Radical_SAM	PF04055.21	gi|257051257|ref|YP_003129090.1|	-	1e-25	91.0	0.0	1.6e-25	90.5	0.0	1.3	1	0	0	1	1	1	1	Radical	SAM	superfamily
Mob_synth_C	PF06463.13	gi|257051257|ref|YP_003129090.1|	-	2.6e-15	56.5	0.0	4e-15	55.9	0.0	1.3	1	0	0	1	1	1	1	Molybdenum	Cofactor	Synthesis	C
Fer4_12	PF13353.6	gi|257051257|ref|YP_003129090.1|	-	3.2e-08	33.9	0.0	5.4e-08	33.2	0.0	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.6	gi|257051257|ref|YP_003129090.1|	-	7.9e-05	22.8	0.0	0.00016	21.8	0.0	1.5	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Cytochrome_CBB3	PF13442.6	gi|257051257|ref|YP_003129090.1|	-	0.039	14.3	0.1	2.9	8.3	0.0	3.1	3	1	0	3	3	3	0	Cytochrome	C	oxidase,	cbb3-type,	subunit	III
Lar_restr_allev	PF14354.6	gi|257051258|ref|YP_003129091.1|	-	0.00011	22.5	0.5	0.00011	22.5	0.5	1.1	1	0	0	1	1	1	1	Restriction	alleviation	protein	Lar
PhnA_Zn_Ribbon	PF08274.12	gi|257051258|ref|YP_003129091.1|	-	0.00033	20.5	1.2	0.00081	19.3	1.2	1.7	1	1	0	1	1	1	1	PhnA	Zinc-Ribbon
RNA_POL_M_15KD	PF02150.16	gi|257051258|ref|YP_003129091.1|	-	0.00054	19.8	0.2	0.00089	19.1	0.2	1.4	1	1	0	1	1	1	1	RNA	polymerases	M/15	Kd	subunit
Zn-ribbon_8	PF09723.10	gi|257051258|ref|YP_003129091.1|	-	0.00072	19.6	0.7	0.6	10.3	0.2	2.1	2	0	0	2	2	2	2	Zinc	ribbon	domain
zinc_ribbon_2	PF13240.6	gi|257051258|ref|YP_003129091.1|	-	0.0009	18.9	0.4	0.2	11.4	0.1	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
zinc_ribbon_5	PF13719.6	gi|257051258|ref|YP_003129091.1|	-	0.00097	18.9	0.2	0.0011	18.6	0.2	1.1	1	0	0	1	1	1	1	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|257051258|ref|YP_003129091.1|	-	0.0018	17.6	0.2	0.13	11.7	0.0	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
zf_UBZ	PF18439.1	gi|257051258|ref|YP_003129091.1|	-	0.0025	17.4	0.6	0.26	10.9	0.1	2.4	2	0	0	2	2	2	1	Ubiquitin-Binding	Zinc	Finger
DNA_RNApol_7kD	PF03604.13	gi|257051258|ref|YP_003129091.1|	-	0.0032	17.1	2.1	0.022	14.4	1.9	2.0	1	1	1	2	2	2	2	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-NADH-PPase	PF09297.11	gi|257051258|ref|YP_003129091.1|	-	0.0033	17.1	1.2	0.98	9.1	0.1	2.1	2	0	0	2	2	2	2	NADH	pyrophosphatase	zinc	ribbon	domain
DZR	PF12773.7	gi|257051258|ref|YP_003129091.1|	-	0.0089	16.0	0.8	0.036	14.1	0.8	1.8	1	1	0	1	1	1	1	Double	zinc	ribbon
zinc-ribbons_6	PF07191.12	gi|257051258|ref|YP_003129091.1|	-	0.01	15.8	0.3	0.015	15.3	0.3	1.3	1	1	0	1	1	1	0	zinc-ribbons
TF_Zn_Ribbon	PF08271.12	gi|257051258|ref|YP_003129091.1|	-	0.014	14.9	2.7	0.019	14.4	2.7	1.3	1	0	0	1	1	1	0	TFIIB	zinc-binding
zf-C4_Topoisom	PF01396.19	gi|257051258|ref|YP_003129091.1|	-	0.019	14.7	0.7	0.71	9.7	0.1	2.1	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
Nudix_N_2	PF14803.6	gi|257051258|ref|YP_003129091.1|	-	0.023	14.6	0.8	2.2	8.3	0.1	2.2	2	0	0	2	2	2	0	Nudix	N-terminal
zf-IS66	PF13005.7	gi|257051258|ref|YP_003129091.1|	-	0.026	14.9	3.0	0.98	9.9	0.5	2.2	1	1	1	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
zf-HYPF	PF07503.12	gi|257051258|ref|YP_003129091.1|	-	0.028	14.2	0.1	2.7	7.9	0.0	2.2	2	0	0	2	2	2	0	HypF	finger
YacG	PF03884.14	gi|257051258|ref|YP_003129091.1|	-	0.03	14.1	0.4	2.1	8.1	0.1	2.1	2	0	0	2	2	2	0	DNA	gyrase	inhibitor	YacG
Cys_rich_CPXG	PF14255.6	gi|257051258|ref|YP_003129091.1|	-	0.031	14.2	2.8	0.36	10.8	2.4	2.0	1	1	1	2	2	2	0	Cysteine-rich	CPXCG
HypA	PF01155.19	gi|257051258|ref|YP_003129091.1|	-	0.036	14.1	0.3	0.04	13.9	0.3	1.1	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
UPF0547	PF10571.9	gi|257051258|ref|YP_003129091.1|	-	0.043	13.9	2.1	0.18	11.9	0.2	2.1	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Elf1	PF05129.13	gi|257051258|ref|YP_003129091.1|	-	0.044	13.8	0.1	0.056	13.5	0.1	1.2	1	0	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
zf-tcix	PF14952.6	gi|257051258|ref|YP_003129091.1|	-	0.053	13.2	1.2	2.5	7.8	0.1	2.1	2	0	0	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
zf-TFIIB	PF13453.6	gi|257051258|ref|YP_003129091.1|	-	0.055	12.8	1.1	2.3	7.6	2.1	2.1	1	1	1	2	2	2	0	Transcription	factor	zinc-finger
CpXC	PF14353.6	gi|257051258|ref|YP_003129091.1|	-	0.068	13.2	0.4	3.9	7.5	0.0	2.0	2	0	0	2	2	2	0	CpXC	protein
YhfH	PF14149.6	gi|257051258|ref|YP_003129091.1|	-	0.069	13.1	1.4	8	6.5	0.1	2.1	2	0	0	2	2	2	0	YhfH-like	protein
Ribosomal_S27e	PF01667.17	gi|257051258|ref|YP_003129091.1|	-	0.079	12.7	0.3	0.11	12.2	0.3	1.3	1	0	0	1	1	1	0	Ribosomal	protein	S27
ADD_ATRX	PF17981.1	gi|257051258|ref|YP_003129091.1|	-	0.089	12.7	0.3	0.36	10.7	0.0	1.8	1	1	1	2	2	2	0	Cysteine	Rich	ADD	domain
OrfB_Zn_ribbon	PF07282.11	gi|257051258|ref|YP_003129091.1|	-	0.14	12.1	0.6	0.21	11.6	0.6	1.4	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
DUF1451	PF07295.11	gi|257051258|ref|YP_003129091.1|	-	0.17	11.9	0.7	0.21	11.6	0.7	1.2	1	0	0	1	1	1	0	Zinc-ribbon	containing	domain
DUF1610	PF07754.11	gi|257051258|ref|YP_003129091.1|	-	0.43	10.6	6.0	4.7	7.3	1.1	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
Prok-RING_1	PF14446.6	gi|257051258|ref|YP_003129091.1|	-	0.45	10.5	5.9	1.1	9.3	5.9	1.6	1	1	0	1	1	1	0	Prokaryotic	RING	finger	family	1
DUF983	PF06170.12	gi|257051258|ref|YP_003129091.1|	-	0.7	10.3	2.4	11	6.5	0.2	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF983)
DUF2249	PF10006.9	gi|257051259|ref|YP_003129092.1|	-	4.6e-15	55.2	0.4	5.7e-15	54.9	0.4	1.1	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2249)
TusA	PF01206.17	gi|257051259|ref|YP_003129092.1|	-	0.00069	19.4	0.0	0.00082	19.1	0.0	1.1	1	0	0	1	1	1	1	Sulfurtransferase	TusA
COX1	PF00115.20	gi|257051261|ref|YP_003129094.1|	-	2.4e-08	33.3	43.2	0.00025	20.0	10.5	4.2	1	1	4	5	5	5	5	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
Herpes_LMP1	PF05297.11	gi|257051261|ref|YP_003129094.1|	-	9.4	5.3	14.5	0.067	12.4	5.5	1.9	2	0	0	2	2	2	0	Herpesvirus	latent	membrane	protein	1	(LMP1)
HATPase_c_2	PF13581.6	gi|257051263|ref|YP_003129096.1|	-	4.4e-10	39.6	0.0	9.2e-10	38.5	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HATPase_c	PF02518.26	gi|257051263|ref|YP_003129096.1|	-	2.8e-09	37.5	0.0	5.3e-09	36.6	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA_4TM	PF16926.5	gi|257051263|ref|YP_003129096.1|	-	0.00017	21.2	0.1	0.00028	20.5	0.1	1.4	1	0	0	1	1	1	1	Archaeal	4TM	region	of	histidine	kinase
HATPase_c_3	PF13589.6	gi|257051263|ref|YP_003129096.1|	-	0.0053	16.6	0.0	0.011	15.5	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|257051263|ref|YP_003129096.1|	-	0.058	13.4	0.7	0.15	12.1	0.2	1.9	1	1	1	2	2	2	0	His	Kinase	A	(phospho-acceptor)	domain
LegC3_N	PF18654.1	gi|257051263|ref|YP_003129096.1|	-	0.18	11.0	3.5	0.24	10.6	3.5	1.1	1	0	0	1	1	1	0	LegC3	N-terminal	coiled-coil	domain
Trns_repr_metal	PF02583.17	gi|257051263|ref|YP_003129096.1|	-	0.18	12.2	0.6	0.5	10.8	0.1	2.0	2	0	0	2	2	2	0	Metal-sensitive	transcriptional	repressor
NIR_SIR	PF01077.22	gi|257051264|ref|YP_003129097.1|	-	1.3e-42	145.1	0.0	1.9e-33	115.2	0.0	2.4	2	0	0	2	2	2	2	Nitrite	and	sulphite	reductase	4Fe-4S	domain
NIR_SIR_ferr	PF03460.17	gi|257051264|ref|YP_003129097.1|	-	7e-40	134.7	0.6	1.5e-19	69.6	0.0	3.8	3	1	0	3	3	3	2	Nitrite/Sulfite	reductase	ferredoxin-like	half	domain
Rhodanese	PF00581.20	gi|257051264|ref|YP_003129097.1|	-	4.4e-31	107.6	0.0	1.2e-15	57.9	0.0	2.5	2	0	0	2	2	2	2	Rhodanese-like	domain
DUF1932	PF09130.11	gi|257051264|ref|YP_003129097.1|	-	0.052	13.5	0.0	0.36	10.8	0.0	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1932)
FrhB_FdhB_C	PF04432.13	gi|257051265|ref|YP_003129098.1|	-	5.2e-25	88.1	0.1	1.4e-24	86.7	0.0	1.7	2	0	0	2	2	2	1	Coenzyme	F420	hydrogenase/dehydrogenase,	beta	subunit	C	terminus
FrhB_FdhB_N	PF04422.13	gi|257051265|ref|YP_003129098.1|	-	3.3e-13	49.6	0.4	6.2e-13	48.7	0.4	1.5	1	0	0	1	1	1	1	Coenzyme	F420	hydrogenase/dehydrogenase,	beta	subunit	N-term
Fer4_21	PF14697.6	gi|257051265|ref|YP_003129098.1|	-	2.4e-09	37.2	8.5	5.8e-09	35.9	8.5	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|257051265|ref|YP_003129098.1|	-	3.1e-07	30.9	24.2	4.4e-05	24.0	13.5	2.7	2	1	2	4	4	4	3	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|257051265|ref|YP_003129098.1|	-	3.6e-07	29.7	19.9	6.9e-06	25.7	3.8	3.2	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|257051265|ref|YP_003129098.1|	-	4.6e-07	29.9	11.3	2.4e-06	27.6	11.2	2.2	2	1	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|257051265|ref|YP_003129098.1|	-	6.1e-07	29.5	12.5	6.1e-07	29.5	12.5	2.1	2	1	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|257051265|ref|YP_003129098.1|	-	7e-07	29.7	3.6	0.0017	18.9	0.2	2.6	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|257051265|ref|YP_003129098.1|	-	2.6e-05	24.4	17.2	0.00019	21.7	4.7	2.9	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|257051265|ref|YP_003129098.1|	-	5.8e-05	23.9	11.0	0.0089	16.9	1.3	2.7	3	0	0	3	3	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_2	PF12797.7	gi|257051265|ref|YP_003129098.1|	-	6.3e-05	22.8	3.8	6.3e-05	22.8	3.8	3.2	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|257051265|ref|YP_003129098.1|	-	8e-05	22.5	4.3	8e-05	22.5	4.3	3.1	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_22	PF17179.4	gi|257051265|ref|YP_003129098.1|	-	0.0022	18.8	8.0	0.24	12.3	1.4	2.4	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|257051265|ref|YP_003129098.1|	-	0.0025	18.0	3.7	0.0025	18.0	3.7	1.8	2	0	0	2	2	1	1	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|257051265|ref|YP_003129098.1|	-	0.0028	18.4	8.8	0.53	11.1	0.2	3.3	3	0	0	3	3	3	2	4Fe-4S	single	cluster	domain
Fer4_8	PF13183.6	gi|257051265|ref|YP_003129098.1|	-	0.0056	17.1	14.9	0.11	12.9	3.8	2.8	2	1	2	4	4	4	2	4Fe-4S	dicluster	domain
Fer4_20	PF14691.6	gi|257051265|ref|YP_003129098.1|	-	0.018	14.8	0.7	0.018	14.8	0.7	2.0	2	0	0	2	2	1	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_13	PF13370.6	gi|257051265|ref|YP_003129098.1|	-	0.3	11.7	16.6	0.95	10.1	4.8	2.8	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_3	PF12798.7	gi|257051265|ref|YP_003129098.1|	-	5	8.3	21.9	0.22	12.6	5.7	2.9	3	0	0	3	3	2	0	4Fe-4S	binding	domain
Retrotran_gag_2	PF14223.6	gi|257051266|ref|YP_003129099.1|	-	0.011	15.4	0.0	0.011	15.4	0.0	1.1	1	0	0	1	1	1	0	gag-polypeptide	of	LTR	copia-type
ROS_MUCR	PF05443.11	gi|257051266|ref|YP_003129099.1|	-	0.061	13.4	0.0	0.061	13.4	0.0	1.0	1	0	0	1	1	1	0	ROS/MUCR	transcriptional	regulator	protein
Gly-zipper_YMGG	PF13441.6	gi|257051267|ref|YP_003129100.1|	-	1.4e-07	31.1	15.0	1.9e-07	30.7	15.0	1.2	1	0	0	1	1	1	1	YMGG-like	Gly-zipper
Gly-zipper_Omp	PF13488.6	gi|257051267|ref|YP_003129100.1|	-	7.5e-05	22.6	35.2	0.002	18.1	20.3	1.9	1	1	1	2	2	2	2	Glycine	zipper
Gly-zipper_OmpA	PF13436.6	gi|257051267|ref|YP_003129100.1|	-	0.0002	21.1	13.6	0.00028	20.6	13.6	1.2	1	0	0	1	1	1	1	Glycine-zipper	domain
Rick_17kDa_Anti	PF05433.15	gi|257051267|ref|YP_003129100.1|	-	0.0014	18.4	18.6	0.0023	17.7	18.6	1.4	1	1	0	1	1	1	1	Glycine	zipper	2TM	domain
DUF456	PF04306.13	gi|257051267|ref|YP_003129100.1|	-	0.0063	16.8	1.2	0.0068	16.7	1.2	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF456)
EspB	PF05802.11	gi|257051267|ref|YP_003129100.1|	-	0.043	13.8	5.0	0.051	13.6	5.0	1.1	1	0	0	1	1	1	0	Enterobacterial	EspB	protein
Peptidase_M18	PF02127.15	gi|257051267|ref|YP_003129100.1|	-	0.062	12.1	0.3	0.066	12.0	0.3	1.0	1	0	0	1	1	1	0	Aminopeptidase	I	zinc	metalloprotease	(M18)
TraT	PF05818.12	gi|257051267|ref|YP_003129100.1|	-	0.85	9.3	4.4	0.83	9.3	4.4	1.1	1	0	0	1	1	1	0	Enterobacterial	TraT	complement	resistance	protein
MccV	PF17508.2	gi|257051267|ref|YP_003129100.1|	-	1.5	9.4	6.9	1.8	9.2	3.9	1.9	1	1	1	2	2	2	0	Microcin	V	bacteriocin
DUF1269	PF06897.12	gi|257051267|ref|YP_003129100.1|	-	6.1	7.2	10.2	51	4.2	10.2	2.0	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1269)
Chorismate_synt	PF01264.21	gi|257051269|ref|YP_003129102.1|	-	1.8e-115	385.1	0.0	2.1e-115	384.9	0.0	1.0	1	0	0	1	1	1	1	Chorismate	synthase
UDG	PF03167.19	gi|257051271|ref|YP_003129104.1|	-	1e-21	77.5	0.0	1.3e-21	77.2	0.0	1.1	1	0	0	1	1	1	1	Uracil	DNA	glycosylase	superfamily
CBS	PF00571.28	gi|257051272|ref|YP_003129105.1|	-	2.8e-24	85.3	5.7	2.8e-13	50.1	1.0	2.2	2	0	0	2	2	2	2	CBS	domain
TmoB	PF06234.12	gi|257051272|ref|YP_003129105.1|	-	0.093	12.8	2.9	0.17	12.0	0.7	2.1	1	1	1	2	2	2	0	Toluene-4-monooxygenase	system	protein	B	(TmoB)
DUF2064	PF09837.9	gi|257051273|ref|YP_003129106.1|	-	0.019	14.7	0.0	0.037	13.9	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2064)
DUF1297	PF06973.12	gi|257051273|ref|YP_003129106.1|	-	0.057	12.9	0.0	0.094	12.2	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1297)
AAA	PF00004.29	gi|257051274|ref|YP_003129107.1|	-	1.4e-100	332.9	0.0	7e-49	165.6	0.0	2.4	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|257051274|ref|YP_003129107.1|	-	3.2e-28	97.3	6.3	8.4e-15	54.3	0.7	2.9	2	0	0	2	2	2	2	AAA+	lid	domain
CDC48_N	PF02359.18	gi|257051274|ref|YP_003129107.1|	-	5.2e-25	87.4	0.1	3.4e-24	84.8	0.2	2.3	2	0	0	2	2	2	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
AAA_2	PF07724.14	gi|257051274|ref|YP_003129107.1|	-	2.7e-18	66.6	0.1	3.7e-09	36.9	0.0	2.5	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
RuvB_N	PF05496.12	gi|257051274|ref|YP_003129107.1|	-	1.7e-16	60.4	0.0	1.1e-07	31.7	0.0	2.8	3	0	0	3	3	2	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
CDC48_2	PF02933.17	gi|257051274|ref|YP_003129107.1|	-	4.5e-15	55.2	0.9	1.1e-14	54.0	0.9	1.7	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	domain	2
AAA_16	PF13191.6	gi|257051274|ref|YP_003129107.1|	-	3.4e-14	53.6	0.5	7.6e-06	26.4	0.0	3.8	3	2	0	3	3	2	2	AAA	ATPase	domain
AAA_22	PF13401.6	gi|257051274|ref|YP_003129107.1|	-	1.4e-11	44.8	0.4	0.00082	19.7	0.0	3.9	2	2	1	3	3	3	2	AAA	domain
AAA_5	PF07728.14	gi|257051274|ref|YP_003129107.1|	-	1.3e-10	41.4	1.5	0.0013	18.8	0.1	4.5	2	2	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
AAA_33	PF13671.6	gi|257051274|ref|YP_003129107.1|	-	2.2e-10	40.9	0.0	0.00029	21.0	0.0	3.0	2	1	0	2	2	2	2	AAA	domain
AAA_14	PF13173.6	gi|257051274|ref|YP_003129107.1|	-	2.2e-10	40.7	0.0	0.00095	19.2	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
TIP49	PF06068.13	gi|257051274|ref|YP_003129107.1|	-	3.4e-10	39.6	0.0	0.00021	20.6	0.0	2.6	2	0	0	2	2	2	2	TIP49	P-loop	domain
RNA_helicase	PF00910.22	gi|257051274|ref|YP_003129107.1|	-	4.2e-08	33.5	0.0	0.017	15.5	0.0	2.6	2	0	0	2	2	2	2	RNA	helicase
IstB_IS21	PF01695.17	gi|257051274|ref|YP_003129107.1|	-	4.6e-08	33.0	0.0	0.002	17.9	0.0	2.4	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
AAA_18	PF13238.6	gi|257051274|ref|YP_003129107.1|	-	1.5e-07	32.0	0.0	0.037	14.6	0.0	3.4	3	1	0	3	3	2	2	AAA	domain
AAA_7	PF12775.7	gi|257051274|ref|YP_003129107.1|	-	2e-07	30.7	0.1	0.021	14.4	0.0	2.7	2	1	0	2	2	2	2	P-loop	containing	dynein	motor	region
AAA_28	PF13521.6	gi|257051274|ref|YP_003129107.1|	-	9.2e-07	29.2	0.0	0.052	13.8	0.0	2.8	2	0	0	2	2	2	2	AAA	domain
Mg_chelatase	PF01078.21	gi|257051274|ref|YP_003129107.1|	-	1.3e-06	28.0	0.3	0.037	13.4	0.0	2.4	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
TsaE	PF02367.17	gi|257051274|ref|YP_003129107.1|	-	1.9e-06	27.9	0.0	0.039	13.9	0.0	2.4	2	0	0	2	2	2	2	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_3	PF07726.11	gi|257051274|ref|YP_003129107.1|	-	3.9e-06	26.8	0.0	0.035	14.0	0.0	2.6	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_25	PF13481.6	gi|257051274|ref|YP_003129107.1|	-	4.3e-06	26.4	1.8	1.2	8.6	0.1	4.2	4	0	0	4	4	4	1	AAA	domain
Sigma54_activat	PF00158.26	gi|257051274|ref|YP_003129107.1|	-	4.3e-06	26.5	0.0	0.13	12.0	0.0	3.5	4	0	0	4	4	4	2	Sigma-54	interaction	domain
DUF815	PF05673.13	gi|257051274|ref|YP_003129107.1|	-	5.6e-06	25.7	0.0	0.011	14.9	0.0	2.9	2	1	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
ATPase	PF06745.13	gi|257051274|ref|YP_003129107.1|	-	7.6e-06	25.4	0.9	0.22	10.9	0.0	3.6	3	1	1	4	4	3	2	KaiC
AAA_24	PF13479.6	gi|257051274|ref|YP_003129107.1|	-	1e-05	25.3	0.1	0.071	12.8	0.0	2.7	3	0	0	3	3	2	2	AAA	domain
AAA_30	PF13604.6	gi|257051274|ref|YP_003129107.1|	-	1.8e-05	24.6	0.1	0.24	11.1	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
AAA_11	PF13086.6	gi|257051274|ref|YP_003129107.1|	-	2e-05	24.5	0.2	0.14	11.9	0.0	2.5	3	0	0	3	3	2	2	AAA	domain
NB-ARC	PF00931.22	gi|257051274|ref|YP_003129107.1|	-	3.3e-05	23.2	0.0	0.28	10.3	0.0	3.1	3	0	0	3	3	3	2	NB-ARC	domain
PhoH	PF02562.16	gi|257051274|ref|YP_003129107.1|	-	4e-05	23.2	0.2	0.11	11.9	0.0	2.3	2	0	0	2	2	2	2	PhoH-like	protein
ABC_tran	PF00005.27	gi|257051274|ref|YP_003129107.1|	-	4.2e-05	24.1	0.0	0.18	12.3	0.0	2.7	2	0	0	2	2	2	2	ABC	transporter
NACHT	PF05729.12	gi|257051274|ref|YP_003129107.1|	-	5e-05	23.3	0.1	0.49	10.3	0.0	3.5	4	0	0	4	4	3	2	NACHT	domain
DUF2075	PF09848.9	gi|257051274|ref|YP_003129107.1|	-	6.2e-05	22.4	0.0	0.37	10.0	0.0	2.4	2	0	0	2	2	2	2	Uncharacterized	conserved	protein	(DUF2075)
Parvo_NS1	PF01057.17	gi|257051274|ref|YP_003129107.1|	-	0.00013	21.1	0.0	0.38	9.8	0.0	2.2	2	0	0	2	2	2	2	Parvovirus	non-structural	protein	NS1
Zeta_toxin	PF06414.12	gi|257051274|ref|YP_003129107.1|	-	0.00014	21.2	0.1	0.4	9.9	0.0	2.5	2	0	0	2	2	2	2	Zeta	toxin
AAA_17	PF13207.6	gi|257051274|ref|YP_003129107.1|	-	0.00023	21.6	0.0	1.4	9.4	0.0	3.2	3	0	0	3	3	2	2	AAA	domain
Sigma54_activ_2	PF14532.6	gi|257051274|ref|YP_003129107.1|	-	0.00046	20.3	0.0	2.7	8.1	0.0	3.1	3	0	0	3	3	3	2	Sigma-54	interaction	domain
NTPase_1	PF03266.15	gi|257051274|ref|YP_003129107.1|	-	0.00062	19.7	1.3	0.62	9.9	0.0	3.5	3	1	1	4	4	3	1	NTPase
Bac_DnaA	PF00308.18	gi|257051274|ref|YP_003129107.1|	-	0.00069	19.5	0.0	0.22	11.3	0.0	2.5	2	0	0	2	2	2	1	Bacterial	dnaA	protein
AAA_19	PF13245.6	gi|257051274|ref|YP_003129107.1|	-	0.00079	19.8	1.6	0.98	9.8	0.0	2.8	2	2	1	3	3	2	2	AAA	domain
ATPase_2	PF01637.18	gi|257051274|ref|YP_003129107.1|	-	0.0013	18.7	0.0	0.45	10.4	0.0	3.0	2	2	0	2	2	2	1	ATPase	domain	predominantly	from	Archaea
ResIII	PF04851.15	gi|257051274|ref|YP_003129107.1|	-	0.0021	18.1	0.1	4.5	7.3	0.0	3.3	3	1	0	3	3	3	0	Type	III	restriction	enzyme,	res	subunit
T2SSE	PF00437.20	gi|257051274|ref|YP_003129107.1|	-	0.015	14.3	0.0	3.5	6.6	0.0	2.5	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
Viral_helicase1	PF01443.18	gi|257051274|ref|YP_003129107.1|	-	0.021	14.5	0.0	2.5	7.8	0.0	2.3	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
AAA_29	PF13555.6	gi|257051274|ref|YP_003129107.1|	-	0.032	14.0	0.0	5.9	6.7	0.0	2.5	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
Guanylate_kin	PF00625.21	gi|257051274|ref|YP_003129107.1|	-	0.035	13.8	0.1	25	4.5	0.0	3.7	2	2	1	3	3	3	0	Guanylate	kinase
KAP_NTPase	PF07693.14	gi|257051274|ref|YP_003129107.1|	-	0.036	13.3	0.1	4.4	6.5	0.0	3.2	2	2	1	4	4	4	0	KAP	family	P-loop	domain
Cytidylate_kin	PF02224.18	gi|257051274|ref|YP_003129107.1|	-	0.038	13.7	0.1	12	5.6	0.0	2.6	2	0	0	2	2	2	0	Cytidylate	kinase
Zot	PF05707.12	gi|257051274|ref|YP_003129107.1|	-	0.058	13.0	0.0	3.6	7.2	0.0	3.0	2	1	0	2	2	2	0	Zonular	occludens	toxin	(Zot)
Molydop_binding	PF01568.21	gi|257051274|ref|YP_003129107.1|	-	0.064	13.3	0.1	0.23	11.5	0.1	1.9	1	0	0	1	1	1	0	Molydopterin	dinucleotide	binding	domain
Rad17	PF03215.15	gi|257051274|ref|YP_003129107.1|	-	0.064	13.2	0.0	9.1	6.2	0.0	2.3	2	0	0	2	2	2	0	Rad17	P-loop	domain
AFG1_ATPase	PF03969.16	gi|257051274|ref|YP_003129107.1|	-	0.065	12.1	0.0	4.3	6.1	0.0	2.4	2	0	0	2	2	2	0	AFG1-like	ATPase
Torsin	PF06309.11	gi|257051274|ref|YP_003129107.1|	-	0.068	13.3	0.0	5.6	7.1	0.0	2.4	2	0	0	2	2	2	0	Torsin
Vps4_C	PF09336.10	gi|257051274|ref|YP_003129107.1|	-	0.074	13.1	0.2	14	5.8	0.0	2.9	2	0	0	2	2	2	0	Vps4	C	terminal	oligomerisation	domain
CPT	PF07931.12	gi|257051274|ref|YP_003129107.1|	-	0.1	12.5	0.0	11	5.8	0.0	2.5	2	0	0	2	2	2	0	Chloramphenicol	phosphotransferase-like	protein
Pantoate_transf	PF02548.15	gi|257051276|ref|YP_003129109.1|	-	2.4e-101	338.5	1.0	2.7e-101	338.3	1.0	1.0	1	0	0	1	1	1	1	Ketopantoate	hydroxymethyltransferase
PEP_mutase	PF13714.6	gi|257051276|ref|YP_003129109.1|	-	9.6e-08	31.8	2.5	2.5e-07	30.4	2.3	1.8	1	1	0	1	1	1	1	Phosphoenolpyruvate	phosphomutase
DUF4231	PF14015.6	gi|257051277|ref|YP_003129110.1|	-	0.29	11.6	3.2	0.33	11.4	3.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4231)
HAD_2	PF13419.6	gi|257051278|ref|YP_003129111.1|	-	1.6e-16	60.9	0.0	4.7e-15	56.1	0.0	2.1	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|257051278|ref|YP_003129111.1|	-	2.1e-07	31.4	2.8	8e-06	26.3	0.1	2.2	1	1	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|257051278|ref|YP_003129111.1|	-	2.4e-06	27.5	0.0	5.4e-06	26.4	0.0	1.6	1	0	0	1	1	1	1	HAD-hyrolase-like
HAD	PF12710.7	gi|257051278|ref|YP_003129111.1|	-	0.0024	18.3	2.6	0.016	15.6	2.6	2.1	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.12	gi|257051278|ref|YP_003129111.1|	-	0.21	11.3	0.1	2	8.1	0.0	2.0	2	0	0	2	2	2	0	haloacid	dehalogenase-like	hydrolase
Prenyltransf	PF01255.19	gi|257051279|ref|YP_003129112.1|	-	1.9e-26	93.0	0.0	1.3e-25	90.2	0.0	1.9	2	0	0	2	2	2	1	Putative	undecaprenyl	diphosphate	synthase
DUF92	PF01940.16	gi|257051280|ref|YP_003129113.1|	-	1.1e-48	165.8	15.3	1.1e-48	165.8	15.3	2.9	2	2	0	2	2	2	1	Integral	membrane	protein	DUF92
Acetyltransf_1	PF00583.25	gi|257051281|ref|YP_003129114.1|	-	1.4e-14	54.4	0.0	1.6e-14	54.1	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|257051281|ref|YP_003129114.1|	-	8.4e-13	48.4	0.0	1e-12	48.1	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|257051281|ref|YP_003129114.1|	-	2.1e-11	44.1	0.1	2.9e-11	43.6	0.1	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_6	PF13480.7	gi|257051281|ref|YP_003129114.1|	-	1e-06	28.9	0.6	1.4e-06	28.6	0.6	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|257051281|ref|YP_003129114.1|	-	0.0014	18.6	0.1	0.0022	17.9	0.1	1.4	1	1	0	1	1	1	1	FR47-like	protein
Acetyltransf_4	PF13420.7	gi|257051281|ref|YP_003129114.1|	-	0.0022	18.1	0.0	0.0043	17.2	0.0	1.4	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
PanZ	PF12568.8	gi|257051281|ref|YP_003129114.1|	-	0.022	14.5	0.0	0.027	14.2	0.0	1.1	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain,	PanZ
Acetyltransf_9	PF13527.7	gi|257051281|ref|YP_003129114.1|	-	0.027	14.5	0.0	0.1	12.7	0.0	1.8	2	0	0	2	2	2	0	Acetyltransferase	(GNAT)	domain
Tudor_1_RapA	PF18339.1	gi|257051281|ref|YP_003129114.1|	-	0.04	13.9	0.1	0.11	12.4	0.0	1.8	2	0	0	2	2	2	0	RapA	N-terminal	Tudor	like	domain	1
Acetyltransf_CG	PF14542.6	gi|257051281|ref|YP_003129114.1|	-	0.046	13.9	0.1	0.078	13.1	0.1	1.3	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
Toprim_4	PF13662.6	gi|257051282|ref|YP_003129115.1|	-	1.1e-10	41.9	0.1	4.3e-10	39.9	0.2	2.0	2	0	0	2	2	2	1	Toprim	domain
Toprim_2	PF13155.6	gi|257051282|ref|YP_003129115.1|	-	5.6e-06	26.7	0.2	1.6e-05	25.2	0.0	1.9	2	0	0	2	2	2	1	Toprim-like
Toprim	PF01751.22	gi|257051282|ref|YP_003129115.1|	-	0.077	13.2	0.2	0.58	10.4	0.2	2.3	1	1	0	1	1	1	0	Toprim	domain
PAS_9	PF13426.7	gi|257051283|ref|YP_003129116.1|	-	3e-12	46.7	0.0	5.3e-12	45.9	0.0	1.4	1	0	0	1	1	1	1	PAS	domain
STAS	PF01740.21	gi|257051283|ref|YP_003129116.1|	-	6.7e-12	45.1	0.1	1.2e-11	44.3	0.1	1.4	1	0	0	1	1	1	1	STAS	domain
PAS_4	PF08448.10	gi|257051283|ref|YP_003129116.1|	-	6.5e-10	39.2	0.0	1.1e-09	38.5	0.0	1.4	1	0	0	1	1	1	1	PAS	fold
STAS_2	PF13466.6	gi|257051283|ref|YP_003129116.1|	-	2.2e-06	27.9	0.7	4.3e-06	27.0	0.7	1.5	1	0	0	1	1	1	1	STAS	domain
PAS	PF00989.25	gi|257051283|ref|YP_003129116.1|	-	2.2e-05	24.4	0.0	5.1e-05	23.2	0.0	1.6	1	0	0	1	1	1	1	PAS	fold
PAS_3	PF08447.12	gi|257051283|ref|YP_003129116.1|	-	0.0018	18.5	0.0	0.0031	17.7	0.0	1.4	1	0	0	1	1	1	1	PAS	fold
PAS_5	PF07310.13	gi|257051283|ref|YP_003129116.1|	-	0.01	15.7	0.1	0.032	14.0	0.0	1.8	3	0	0	3	3	3	1	PAS	domain
ATP-grasp_5	PF13549.6	gi|257051283|ref|YP_003129116.1|	-	0.033	13.6	0.7	0.058	12.8	0.1	1.6	2	0	0	2	2	2	0	ATP-grasp	domain
Transketolase_C	PF02780.20	gi|257051283|ref|YP_003129116.1|	-	0.046	13.6	0.5	0.32	10.9	0.3	2.0	2	0	0	2	2	2	0	Transketolase,	C-terminal	domain
STAS	PF01740.21	gi|257051284|ref|YP_003129117.1|	-	1.1e-07	31.5	0.0	1.2e-07	31.3	0.0	1.1	1	0	0	1	1	1	1	STAS	domain
STAS_2	PF13466.6	gi|257051284|ref|YP_003129117.1|	-	6.4e-06	26.4	0.9	9.3e-06	25.9	0.1	1.7	3	0	0	3	3	3	1	STAS	domain
HATPase_c_2	PF13581.6	gi|257051285|ref|YP_003129118.1|	-	6.3e-12	45.6	0.1	8e-12	45.2	0.1	1.1	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HATPase_c	PF02518.26	gi|257051285|ref|YP_003129118.1|	-	3.2e-06	27.6	0.1	4.9e-06	27.0	0.1	1.2	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Peptidase_C23	PF05379.11	gi|257051285|ref|YP_003129118.1|	-	0.065	13.4	0.0	0.74	10.0	0.0	2.2	2	0	0	2	2	2	0	Carlavirus	endopeptidase
HATPase_c_2	PF13581.6	gi|257051286|ref|YP_003129119.1|	-	5.8e-11	42.4	0.6	1.2e-10	41.4	0.6	1.4	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
SpoIIE	PF07228.12	gi|257051286|ref|YP_003129119.1|	-	2.6e-06	27.5	1.9	6.1e-06	26.3	1.1	2.0	2	0	0	2	2	2	1	Stage	II	sporulation	protein	E	(SpoIIE)
HATPase_c	PF02518.26	gi|257051286|ref|YP_003129119.1|	-	0.0045	17.5	0.1	0.0082	16.6	0.1	1.3	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c	PF02518.26	gi|257051287|ref|YP_003129120.1|	-	2.1e-17	63.6	0.0	5.2e-17	62.4	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_9	PF13426.7	gi|257051287|ref|YP_003129120.1|	-	3.2e-09	37.0	0.0	1.3e-08	35.0	0.0	2.0	2	0	0	2	2	2	1	PAS	domain
PAS_3	PF08447.12	gi|257051287|ref|YP_003129120.1|	-	9.1e-08	32.3	0.0	2.8e-07	30.7	0.0	1.9	1	0	0	1	1	1	1	PAS	fold
PAS_8	PF13188.7	gi|257051287|ref|YP_003129120.1|	-	6.1e-07	29.3	0.0	4.4e-06	26.6	0.0	2.5	2	0	0	2	2	2	1	PAS	domain
PAS	PF00989.25	gi|257051287|ref|YP_003129120.1|	-	1.2e-06	28.5	0.1	5e-06	26.5	0.0	2.1	2	0	0	2	2	2	1	PAS	fold
PAS_4	PF08448.10	gi|257051287|ref|YP_003129120.1|	-	3.5e-06	27.2	0.7	1e-05	25.7	0.1	2.2	2	0	0	2	2	2	1	PAS	fold
HisKA_4TM	PF16926.5	gi|257051287|ref|YP_003129120.1|	-	9.9e-06	25.2	0.0	1.6e-05	24.5	0.0	1.3	1	0	0	1	1	1	1	Archaeal	4TM	region	of	histidine	kinase
HATPase_c_2	PF13581.6	gi|257051287|ref|YP_003129120.1|	-	2.2e-05	24.4	0.2	9.7e-05	22.3	0.1	2.2	1	1	1	2	2	2	1	Histidine	kinase-like	ATPase	domain
HATPase_c_5	PF14501.6	gi|257051287|ref|YP_003129120.1|	-	2.6e-05	24.1	0.0	0.00044	20.1	0.0	2.5	2	0	0	2	2	2	1	GHKL	domain
SPOB_a	PF14689.6	gi|257051287|ref|YP_003129120.1|	-	0.00052	19.7	0.2	0.0042	16.7	0.1	2.3	2	0	0	2	2	2	1	Sensor_kinase_SpoOB-type,	alpha-helical	domain
HisKA	PF00512.25	gi|257051287|ref|YP_003129120.1|	-	0.0026	17.8	1.1	0.0026	17.8	1.1	2.1	2	0	0	2	2	1	1	His	Kinase	A	(phospho-acceptor)	domain
RasGAP_C	PF03836.15	gi|257051287|ref|YP_003129120.1|	-	0.12	12.5	2.6	0.23	11.6	0.2	2.2	2	0	0	2	2	2	0	RasGAP	C-terminus
TMF_DNA_bd	PF12329.8	gi|257051287|ref|YP_003129120.1|	-	0.16	12.0	2.3	0.73	9.9	0.2	2.4	2	0	0	2	2	2	0	TATA	element	modulatory	factor	1	DNA	binding
Spc7	PF08317.11	gi|257051287|ref|YP_003129120.1|	-	0.21	10.4	3.3	0.37	9.6	0.8	2.1	2	0	0	2	2	2	0	Spc7	kinetochore	protein
ABC_tran_CTD	PF16326.5	gi|257051287|ref|YP_003129120.1|	-	0.43	10.9	11.2	4.7	7.5	3.8	3.0	2	1	1	3	3	3	0	ABC	transporter	C-terminal	domain
MscS_porin	PF12795.7	gi|257051287|ref|YP_003129120.1|	-	0.83	9.1	8.1	8.5	5.9	4.3	2.2	2	0	0	2	2	2	0	Mechanosensitive	ion	channel	porin	domain
ATG16	PF08614.11	gi|257051287|ref|YP_003129120.1|	-	0.99	9.6	8.9	0.85	9.8	3.9	2.2	2	0	0	2	2	2	0	Autophagy	protein	16	(ATG16)
GrpE	PF01025.19	gi|257051287|ref|YP_003129120.1|	-	1	9.0	6.9	1.6	8.3	0.5	2.4	2	0	0	2	2	2	0	GrpE
ZapB	PF06005.12	gi|257051287|ref|YP_003129120.1|	-	1.3	9.5	10.5	6.8	7.2	0.7	3.1	3	0	0	3	3	3	0	Cell	division	protein	ZapB
PspA_IM30	PF04012.12	gi|257051287|ref|YP_003129120.1|	-	1.4	8.5	6.6	0.46	10.0	0.8	2.2	2	0	0	2	2	2	0	PspA/IM30	family
NPV_P10	PF05531.12	gi|257051287|ref|YP_003129120.1|	-	1.7	9.2	8.1	6.1	7.4	1.2	3.9	4	1	0	4	4	4	0	Nucleopolyhedrovirus	P10	protein
SlyX	PF04102.12	gi|257051287|ref|YP_003129120.1|	-	2.1	9.0	6.7	1.2	9.8	0.5	3.0	3	1	0	3	3	2	0	SlyX
DUF3311	PF11755.8	gi|257051288|ref|YP_003129121.1|	-	2.3e-15	56.3	16.0	2.7e-15	56.0	16.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3311)
TRAP-gamma	PF07074.12	gi|257051288|ref|YP_003129121.1|	-	0.19	11.3	1.1	0.2	11.2	1.1	1.2	1	0	0	1	1	1	0	Translocon-associated	protein,	gamma	subunit	(TRAP-gamma)
DUF4191	PF13829.6	gi|257051288|ref|YP_003129121.1|	-	0.7	9.2	3.3	0.81	9.0	3.3	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4191)
SSF	PF00474.17	gi|257051289|ref|YP_003129122.1|	-	6.8e-44	150.4	25.6	9.1e-44	149.9	25.6	1.1	1	0	0	1	1	1	1	Sodium:solute	symporter	family
Glutaredoxin	PF00462.24	gi|257051291|ref|YP_003129124.1|	-	3.2e-15	56.1	0.0	4.8e-15	55.5	0.0	1.3	1	0	0	1	1	1	1	Glutaredoxin
BolA	PF01722.18	gi|257051292|ref|YP_003129125.1|	-	6.4e-17	61.6	0.1	7.1e-17	61.5	0.1	1.1	1	0	0	1	1	1	1	BolA-like	protein
tRNA-synt_1	PF00133.22	gi|257051293|ref|YP_003129126.1|	-	6.5e-119	397.9	0.1	2.8e-117	392.5	0.1	2.4	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.13	gi|257051293|ref|YP_003129126.1|	-	9.9e-34	116.5	0.0	1.8e-33	115.6	0.0	1.5	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1g	PF09334.11	gi|257051293|ref|YP_003129126.1|	-	3.8e-21	75.3	0.2	3.9e-10	39.1	0.0	3.6	3	1	0	3	3	3	3	tRNA	synthetases	class	I	(M)
tRNA-synt_1_2	PF13603.6	gi|257051293|ref|YP_003129126.1|	-	7.4e-05	22.3	0.0	0.00023	20.7	0.0	1.8	1	1	0	1	1	1	1	Leucyl-tRNA	synthetase,	Domain	2
tRNA-synt_1f	PF01921.18	gi|257051293|ref|YP_003129126.1|	-	0.00023	20.2	0.0	0.0043	16.0	0.0	2.2	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(K)
tRNA-synt_1e	PF01406.19	gi|257051293|ref|YP_003129126.1|	-	0.00043	19.7	0.0	0.19	11.0	0.0	2.6	2	1	0	2	2	2	2	tRNA	synthetases	class	I	(C)	catalytic	domain
Zn-ribbon_8	PF09723.10	gi|257051293|ref|YP_003129126.1|	-	0.0024	18.0	3.6	0.025	14.7	0.8	2.7	2	0	0	2	2	2	1	Zinc	ribbon	domain
DUF3047	PF11249.8	gi|257051293|ref|YP_003129126.1|	-	0.02	14.3	0.2	0.046	13.1	0.2	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3047)
DZR	PF12773.7	gi|257051293|ref|YP_003129126.1|	-	0.04	13.9	0.4	1.2	9.2	0.1	2.3	2	0	0	2	2	2	0	Double	zinc	ribbon
zf-dskA_traR	PF01258.17	gi|257051293|ref|YP_003129126.1|	-	0.1	12.6	0.1	0.1	12.6	0.1	2.6	3	0	0	3	3	3	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
HypA	PF01155.19	gi|257051293|ref|YP_003129126.1|	-	0.11	12.6	0.1	2.9	7.9	0.0	2.5	2	0	0	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Lar_restr_allev	PF14354.6	gi|257051293|ref|YP_003129126.1|	-	0.38	11.2	2.1	21	5.6	0.0	3.4	3	0	0	3	3	3	0	Restriction	alleviation	protein	Lar
TF_Zn_Ribbon	PF08271.12	gi|257051293|ref|YP_003129126.1|	-	0.65	9.6	3.2	14	5.3	0.1	4.0	4	0	0	4	4	4	0	TFIIB	zinc-binding
zf-TFIIB	PF13453.6	gi|257051293|ref|YP_003129126.1|	-	1.8	7.9	6.3	4.2	6.8	0.1	3.4	3	0	0	3	3	3	0	Transcription	factor	zinc-finger
DUF35_N	PF12172.8	gi|257051293|ref|YP_003129126.1|	-	2.6	8.0	8.1	4.3	7.3	1.0	3.3	3	0	0	3	3	3	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Mntp	PF02659.15	gi|257051294|ref|YP_003129127.1|	-	0.1	12.3	1.4	0.36	10.6	0.0	2.1	2	0	0	2	2	2	0	Putative	manganese	efflux	pump
DUF973	PF06157.11	gi|257051294|ref|YP_003129127.1|	-	0.95	8.4	3.1	2.1	7.3	2.8	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF973)
TrkA_C	PF02080.21	gi|257051295|ref|YP_003129128.1|	-	0.057	13.2	0.0	0.16	11.8	0.0	1.8	1	0	0	1	1	1	0	TrkA-C	domain
CbiA	PF01656.23	gi|257051296|ref|YP_003129129.1|	-	1.4e-12	47.8	0.0	2.6e-12	46.9	0.0	1.4	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.6	gi|257051296|ref|YP_003129129.1|	-	8.3e-10	38.9	0.0	3.8e-08	33.4	0.0	2.3	1	1	0	1	1	1	1	AAA	domain
ParA	PF10609.9	gi|257051296|ref|YP_003129129.1|	-	3.3e-09	36.6	1.6	0.0018	17.8	0.5	2.2	2	0	0	2	2	2	2	NUBPL	iron-transfer	P-loop	NTPase
ATPase	PF06745.13	gi|257051296|ref|YP_003129129.1|	-	1.7e-06	27.6	0.1	0.017	14.5	0.0	2.6	2	1	1	3	3	3	2	KaiC
AAA_26	PF13500.6	gi|257051296|ref|YP_003129129.1|	-	1.6e-05	24.8	1.8	0.0028	17.5	0.1	2.3	2	0	0	2	2	2	2	AAA	domain
MipZ	PF09140.11	gi|257051296|ref|YP_003129129.1|	-	0.0019	17.6	0.0	0.0033	16.8	0.0	1.4	1	0	0	1	1	1	1	ATPase	MipZ
NACHT	PF05729.12	gi|257051296|ref|YP_003129129.1|	-	0.014	15.3	0.0	6.4	6.7	0.0	2.4	2	0	0	2	2	2	0	NACHT	domain
PAXNEB	PF05625.11	gi|257051296|ref|YP_003129129.1|	-	0.017	14.3	0.2	0.087	12.0	0.0	1.9	2	0	0	2	2	2	0	PAXNEB	protein
Rad51	PF08423.11	gi|257051296|ref|YP_003129129.1|	-	0.02	14.2	0.0	0.036	13.3	0.0	1.4	1	0	0	1	1	1	0	Rad51
PRK	PF00485.18	gi|257051296|ref|YP_003129129.1|	-	0.026	14.3	0.0	0.038	13.7	0.0	1.3	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
CBP_BcsQ	PF06564.12	gi|257051296|ref|YP_003129129.1|	-	0.051	13.1	0.0	0.23	10.9	0.1	1.9	2	0	0	2	2	2	0	Cellulose	biosynthesis	protein	BcsQ
GvpD	PF07088.11	gi|257051296|ref|YP_003129129.1|	-	0.062	11.9	0.1	8.6	4.9	0.0	2.2	1	1	0	2	2	2	0	GvpD	gas	vesicle	protein
FTHFS	PF01268.19	gi|257051296|ref|YP_003129129.1|	-	0.087	11.0	0.1	0.12	10.6	0.1	1.1	1	0	0	1	1	1	0	Formate--tetrahydrofolate	ligase
DUF853	PF05872.12	gi|257051296|ref|YP_003129129.1|	-	0.16	10.5	0.2	0.24	10.0	0.2	1.1	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF853)
ParA	PF10609.9	gi|257051297|ref|YP_003129130.1|	-	8e-12	45.1	1.0	3e-07	30.2	0.1	2.6	2	1	0	2	2	2	2	NUBPL	iron-transfer	P-loop	NTPase
CbiA	PF01656.23	gi|257051297|ref|YP_003129130.1|	-	4.7e-10	39.6	0.0	6e-10	39.3	0.0	1.1	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
Fer4_NifH	PF00142.18	gi|257051297|ref|YP_003129130.1|	-	1.6e-05	24.5	0.1	0.074	12.5	0.0	2.1	2	0	0	2	2	2	2	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
AAA_31	PF13614.6	gi|257051297|ref|YP_003129130.1|	-	0.00015	21.7	1.1	0.00093	19.2	1.1	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|257051297|ref|YP_003129130.1|	-	0.00037	20.7	4.9	0.00043	20.5	0.1	2.7	1	1	0	2	2	2	1	AAA	domain
MipZ	PF09140.11	gi|257051297|ref|YP_003129130.1|	-	0.00061	19.1	2.4	0.0026	17.1	2.4	2.1	1	1	0	1	1	1	1	ATPase	MipZ
CBP_BcsQ	PF06564.12	gi|257051297|ref|YP_003129130.1|	-	0.0032	17.0	0.3	1.6	8.2	0.0	2.2	2	0	0	2	2	2	2	Cellulose	biosynthesis	protein	BcsQ
ArsA_ATPase	PF02374.15	gi|257051297|ref|YP_003129130.1|	-	0.0066	15.7	0.9	0.016	14.4	0.4	1.7	2	0	0	2	2	2	1	Anion-transporting	ATPase
AAA_22	PF13401.6	gi|257051297|ref|YP_003129130.1|	-	0.019	15.2	0.1	3.5	7.9	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
AAA_26	PF13500.6	gi|257051297|ref|YP_003129130.1|	-	0.032	14.1	1.5	0.25	11.1	1.5	2.0	1	1	0	1	1	1	0	AAA	domain
AAA_24	PF13479.6	gi|257051297|ref|YP_003129130.1|	-	0.069	12.9	0.0	0.11	12.2	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_25	PF13481.6	gi|257051297|ref|YP_003129130.1|	-	0.074	12.6	3.2	0.075	12.6	1.9	2.0	1	1	0	2	2	2	0	AAA	domain
adh_short	PF00106.25	gi|257051297|ref|YP_003129130.1|	-	0.1	12.0	1.7	2	7.8	0.3	2.1	2	0	0	2	2	2	0	short	chain	dehydrogenase
AAA_18	PF13238.6	gi|257051297|ref|YP_003129130.1|	-	0.1	13.1	0.0	0.2	12.2	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
CARDB	PF07705.11	gi|257051299|ref|YP_003129132.1|	-	1.5e-05	25.2	18.6	0.00049	20.3	1.8	4.4	3	1	1	4	4	4	2	CARDB
PGF-CTERM	PF18204.1	gi|257051299|ref|YP_003129132.1|	-	0.0035	17.3	5.0	0.0087	16.0	5.0	1.7	1	0	0	1	1	1	1	PGF-CTERM	motif
Peptidase_M26_N	PF05342.14	gi|257051299|ref|YP_003129132.1|	-	0.004	16.6	0.0	0.008	15.6	0.0	1.4	1	0	0	1	1	1	1	M26	IgA1-specific	Metallo-endopeptidase	N-terminal	region
DUF3592	PF12158.8	gi|257051299|ref|YP_003129132.1|	-	0.11	12.6	1.2	0.26	11.3	1.2	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3592)
DUF5393	PF17371.2	gi|257051299|ref|YP_003129132.1|	-	0.16	10.1	4.0	0.31	9.1	4.0	1.4	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5393)
A2M	PF00207.22	gi|257051299|ref|YP_003129132.1|	-	0.4	10.6	2.2	1.4	8.8	0.0	2.9	3	0	0	3	3	3	0	Alpha-2-macroglobulin	family
CBM_X2	PF03442.14	gi|257051299|ref|YP_003129132.1|	-	0.75	10.0	7.3	1.4	9.1	4.4	3.2	3	0	0	3	3	3	0	Carbohydrate	binding	domain	X2
Aerolysin	PF01117.20	gi|257051299|ref|YP_003129132.1|	-	3.8	6.6	7.8	0.31	10.2	2.7	1.7	2	0	0	2	2	2	0	Aerolysin	toxin
MG4	PF17789.1	gi|257051300|ref|YP_003129133.1|	-	0.024	14.8	0.3	0.051	13.7	0.2	1.6	2	0	0	2	2	2	0	Macroglobulin	domain	MG4
YtkA	PF13115.6	gi|257051300|ref|YP_003129133.1|	-	0.059	14.0	0.5	0.14	12.8	0.4	1.7	1	1	0	1	1	1	0	YtkA-like
ID	PF18543.1	gi|257051300|ref|YP_003129133.1|	-	0.082	12.9	0.2	0.64	10.1	0.0	2.2	2	0	0	2	2	2	0	Intracellular	delivery	domain
GluRS_N	PF18466.1	gi|257051300|ref|YP_003129133.1|	-	7.8	7.0	7.2	18	5.8	0.9	2.6	3	0	0	3	3	3	0	Glutamate--tRNA	ligase	N-terminal	domain
DUF87	PF01935.17	gi|257051301|ref|YP_003129134.1|	-	3.1e-06	27.5	0.0	7.1e-05	23.0	0.0	2.2	1	1	0	1	1	1	1	Helicase	HerA,	central	domain
DUF853	PF05872.12	gi|257051301|ref|YP_003129134.1|	-	1.3e-05	24.0	0.2	0.019	13.6	0.0	2.1	2	0	0	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF853)
AAA_22	PF13401.6	gi|257051301|ref|YP_003129134.1|	-	0.042	14.1	0.0	9.7	6.5	0.1	2.3	2	0	0	2	2	2	0	AAA	domain
AAA_16	PF13191.6	gi|257051301|ref|YP_003129134.1|	-	0.12	12.8	0.1	0.2	12.0	0.1	1.7	1	1	0	1	1	1	0	AAA	ATPase	domain
Aldo_ket_red	PF00248.21	gi|257051305|ref|YP_003129138.1|	-	1.3e-09	37.7	0.0	1.5e-09	37.5	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
Methyltransf_25	PF13649.6	gi|257051306|ref|YP_003129139.1|	-	1.8e-13	51.0	0.1	2.9e-13	50.3	0.1	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|257051306|ref|YP_003129139.1|	-	6.1e-12	46.0	0.1	9.8e-12	45.4	0.1	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|257051306|ref|YP_003129139.1|	-	1.9e-08	34.3	0.0	2.2e-08	34.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
MetW	PF07021.12	gi|257051306|ref|YP_003129139.1|	-	1.7e-07	31.0	0.0	2.5e-07	30.5	0.0	1.1	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Methyltransf_12	PF08242.12	gi|257051306|ref|YP_003129139.1|	-	3.2e-06	27.8	0.1	4.9e-06	27.2	0.1	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|257051306|ref|YP_003129139.1|	-	2.9e-05	23.9	0.0	3.4e-05	23.7	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
TehB	PF03848.14	gi|257051306|ref|YP_003129139.1|	-	0.0076	15.7	0.0	0.0093	15.4	0.0	1.3	1	1	0	1	1	1	1	Tellurite	resistance	protein	TehB
Methyltransf_9	PF08003.11	gi|257051306|ref|YP_003129139.1|	-	0.0082	15.1	0.0	0.01	14.8	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
Methyltransf_24	PF13578.6	gi|257051306|ref|YP_003129139.1|	-	0.016	16.2	0.1	0.068	14.2	0.1	1.9	1	1	1	2	2	2	0	Methyltransferase	domain
DUF938	PF06080.12	gi|257051306|ref|YP_003129139.1|	-	0.037	13.8	0.0	0.069	12.9	0.0	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF938)
BAAT_C	PF08840.11	gi|257051307|ref|YP_003129140.1|	-	0.072	13.0	0.0	0.11	12.4	0.0	1.2	1	0	0	1	1	1	0	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
TM_helix	PF05552.12	gi|257051308|ref|YP_003129141.1|	-	2.6e-05	24.1	13.4	5e-05	23.2	0.2	3.5	3	0	0	3	3	3	2	Conserved	TM	helix
Abhydrolase_3	PF07859.13	gi|257051309|ref|YP_003129142.1|	-	9.7e-19	68.1	9.3	6.8e-16	58.8	9.3	3.0	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Peptidase_S9	PF00326.21	gi|257051309|ref|YP_003129142.1|	-	8.6e-18	64.6	0.4	3.1e-13	49.7	0.0	2.2	2	0	0	2	2	2	2	Prolyl	oligopeptidase	family
COesterase	PF00135.28	gi|257051309|ref|YP_003129142.1|	-	1.3e-09	37.5	0.4	2.8e-08	33.1	0.3	2.5	1	1	1	2	2	2	1	Carboxylesterase	family
DLH	PF01738.18	gi|257051309|ref|YP_003129142.1|	-	3.8e-08	33.2	0.0	3.4e-07	30.1	0.0	2.1	2	0	0	2	2	2	1	Dienelactone	hydrolase	family
Hydrolase_4	PF12146.8	gi|257051309|ref|YP_003129142.1|	-	1.9e-05	24.0	0.1	0.005	16.1	0.0	2.6	2	0	0	2	2	2	2	Serine	aminopeptidase,	S33
LIP	PF03583.14	gi|257051309|ref|YP_003129142.1|	-	0.0023	17.3	0.1	0.24	10.7	0.0	2.2	2	0	0	2	2	2	1	Secretory	lipase
Esterase_phd	PF10503.9	gi|257051309|ref|YP_003129142.1|	-	0.0036	16.8	2.9	2	7.8	0.3	3.6	3	1	1	4	4	4	1	Esterase	PHB	depolymerase
Abhydrolase_4	PF08386.10	gi|257051309|ref|YP_003129142.1|	-	0.0075	16.4	0.1	0.02	15.0	0.0	1.7	2	0	0	2	2	2	1	TAP-like	protein
Abhydrolase_2	PF02230.16	gi|257051309|ref|YP_003129142.1|	-	0.021	14.7	0.0	0.059	13.2	0.0	1.7	2	0	0	2	2	2	0	Phospholipase/Carboxylesterase
DUF2920	PF11144.8	gi|257051309|ref|YP_003129142.1|	-	0.036	13.2	0.0	0.74	8.9	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2920)
DUF829	PF05705.14	gi|257051309|ref|YP_003129142.1|	-	0.079	12.8	0.0	0.13	12.1	0.0	1.3	1	0	0	1	1	1	0	Eukaryotic	protein	of	unknown	function	(DUF829)
PaaX	PF07848.12	gi|257051309|ref|YP_003129142.1|	-	0.15	12.3	0.0	1.1	9.5	0.0	2.1	2	0	0	2	2	2	0	PaaX-like	protein
HAD	PF12710.7	gi|257051310|ref|YP_003129143.1|	-	1.5e-20	74.4	1.8	1.9e-20	74.0	1.8	1.1	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|257051310|ref|YP_003129143.1|	-	3.7e-12	47.0	6.5	9.4e-12	45.7	6.5	1.6	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.12	gi|257051310|ref|YP_003129143.1|	-	9.8e-10	38.6	0.2	7.4e-08	32.4	0.0	2.8	3	0	0	3	3	3	1	haloacid	dehalogenase-like	hydrolase
Put_Phosphatase	PF06888.12	gi|257051310|ref|YP_003129143.1|	-	7.4e-06	25.5	0.0	0.0015	17.9	0.0	2.1	2	0	0	2	2	2	2	Putative	Phosphatase
HAD_2	PF13419.6	gi|257051310|ref|YP_003129143.1|	-	0.00013	22.2	0.1	0.011	15.8	0.0	2.5	2	1	0	2	2	2	1	Haloacid	dehalogenase-like	hydrolase
UMPH-1	PF05822.12	gi|257051310|ref|YP_003129143.1|	-	0.0026	17.3	0.0	0.0035	16.9	0.0	1.2	1	0	0	1	1	1	1	Pyrimidine	5'-nucleotidase	(UMPH-1)
LpxI_N	PF17930.1	gi|257051310|ref|YP_003129143.1|	-	0.0076	16.1	0.0	0.017	15.0	0.0	1.6	2	0	0	2	2	2	1	LpxI	N-terminal	domain
S6PP	PF05116.13	gi|257051310|ref|YP_003129143.1|	-	0.2	11.1	0.0	0.43	10.1	0.0	1.5	1	0	0	1	1	1	0	Sucrose-6F-phosphate	phosphohydrolase
MFS_1	PF07690.16	gi|257051311|ref|YP_003129144.1|	-	1.7e-33	116.0	52.4	2.4e-21	76.0	29.5	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.7	gi|257051311|ref|YP_003129144.1|	-	3.1e-05	23.0	8.9	0.045	12.6	8.7	2.4	2	0	0	2	2	2	2	MFS_1	like	family
OATP	PF03137.20	gi|257051311|ref|YP_003129144.1|	-	0.44	8.8	7.6	1.2	7.4	1.6	2.4	1	1	1	2	2	2	0	Organic	Anion	Transporter	Polypeptide	(OATP)	family
NYN	PF01936.18	gi|257051312|ref|YP_003129145.1|	-	3.5e-35	121.6	0.4	4.3e-35	121.3	0.4	1.0	1	0	0	1	1	1	1	NYN	domain
Amidohydro_3	PF07969.11	gi|257051312|ref|YP_003129145.1|	-	0.0049	16.4	0.3	0.0054	16.2	0.3	1.1	1	0	0	1	1	1	1	Amidohydrolase	family
FMO-like	PF00743.19	gi|257051312|ref|YP_003129145.1|	-	0.059	11.8	0.0	0.075	11.4	0.0	1.1	1	0	0	1	1	1	0	Flavin-binding	monooxygenase-like
LpxI_N	PF17930.1	gi|257051312|ref|YP_003129145.1|	-	0.11	12.4	0.0	0.3	11.0	0.0	1.7	2	0	0	2	2	2	0	LpxI	N-terminal	domain
Wzy_C	PF04932.15	gi|257051313|ref|YP_003129146.1|	-	0.31	10.7	2.5	0.35	10.5	2.5	1.0	1	0	0	1	1	1	0	O-Antigen	ligase
TGT_C2	PF14810.6	gi|257051314|ref|YP_003129147.1|	-	8.6e-23	80.3	0.4	2.2e-22	79.0	0.2	1.7	2	0	0	2	2	2	1	Patch-forming	domain	C2	of	tRNA-guanine	transglycosylase
PUA	PF01472.20	gi|257051314|ref|YP_003129147.1|	-	5.1e-14	52.0	0.3	1e-13	51.0	0.3	1.5	2	0	0	2	2	2	1	PUA	domain
UPF0113	PF03657.13	gi|257051314|ref|YP_003129147.1|	-	0.049	13.9	0.0	0.069	13.4	0.0	1.2	1	0	0	1	1	1	0	UPF0113	PUA	domain
NAC	PF01849.18	gi|257051315|ref|YP_003129148.1|	-	7.2e-18	64.3	0.2	1.2e-17	63.6	0.2	1.4	1	0	0	1	1	1	1	NAC	domain
UBA_4	PF14555.6	gi|257051315|ref|YP_003129148.1|	-	0.0011	18.8	0.7	0.0028	17.4	0.4	1.8	2	0	0	2	2	2	1	UBA-like	domain
Mlf1IP	PF10248.9	gi|257051315|ref|YP_003129148.1|	-	0.045	13.7	0.0	0.054	13.5	0.0	1.1	1	0	0	1	1	1	0	Myelodysplasia-myeloid	leukemia	factor	1-interacting	protein
UBA	PF00627.31	gi|257051315|ref|YP_003129148.1|	-	1.3	9.0	5.0	0.65	10.0	0.5	2.7	3	0	0	3	3	3	0	UBA/TS-N	domain
GCD14	PF08704.10	gi|257051316|ref|YP_003129149.1|	-	1.5e-16	60.8	0.0	6.3e-13	49.0	0.0	2.0	1	1	1	2	2	2	2	tRNA	methyltransferase	complex	GCD14	subunit
PCMT	PF01135.19	gi|257051316|ref|YP_003129149.1|	-	1.7e-07	31.2	0.1	2.4e-07	30.7	0.1	1.3	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_25	PF13649.6	gi|257051316|ref|YP_003129149.1|	-	3.7e-07	30.8	0.3	7.2e-07	29.8	0.3	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|257051316|ref|YP_003129149.1|	-	4.9e-06	26.4	0.0	6.5e-06	26.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
PrmA	PF06325.13	gi|257051316|ref|YP_003129149.1|	-	1.4e-05	24.6	0.2	1.9e-05	24.2	0.2	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_11	PF08241.12	gi|257051316|ref|YP_003129149.1|	-	1.9e-05	25.2	0.2	3.7e-05	24.3	0.2	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_24	PF13578.6	gi|257051316|ref|YP_003129149.1|	-	2.6e-05	25.2	0.3	4.7e-05	24.4	0.3	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_3	PF01596.17	gi|257051316|ref|YP_003129149.1|	-	5.8e-05	22.4	0.0	7.7e-05	22.0	0.0	1.2	1	0	0	1	1	1	1	O-methyltransferase
RrnaAD	PF00398.20	gi|257051316|ref|YP_003129149.1|	-	8.1e-05	21.8	0.0	0.00012	21.3	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_23	PF13489.6	gi|257051316|ref|YP_003129149.1|	-	0.0001	22.2	0.0	0.00018	21.4	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|257051316|ref|YP_003129149.1|	-	0.00011	21.8	0.1	0.00019	21.0	0.1	1.4	1	1	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_18	PF12847.7	gi|257051316|ref|YP_003129149.1|	-	0.00047	20.1	0.0	0.0008	19.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
CMAS	PF02353.20	gi|257051316|ref|YP_003129149.1|	-	0.0026	17.1	0.0	0.0031	16.9	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Cons_hypoth95	PF03602.15	gi|257051316|ref|YP_003129149.1|	-	0.0063	16.2	0.0	0.0098	15.5	0.0	1.4	1	1	0	1	1	1	1	Conserved	hypothetical	protein	95
MetW	PF07021.12	gi|257051316|ref|YP_003129149.1|	-	0.04	13.5	0.6	0.12	12.0	0.3	1.8	2	0	0	2	2	2	0	Methionine	biosynthesis	protein	MetW
Methyltransf_12	PF08242.12	gi|257051316|ref|YP_003129149.1|	-	0.1	13.4	0.2	0.19	12.5	0.2	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
Pilin_N	PF07790.11	gi|257051317|ref|YP_003129150.1|	-	6.8e-09	36.5	0.3	1.5e-08	35.4	0.0	1.7	2	0	0	2	2	2	1	Archaeal	Type	IV	pilin,	N-terminal
TFIIS_C	PF01096.18	gi|257051319|ref|YP_003129152.1|	-	5.7e-17	61.3	4.5	5.7e-17	61.3	4.5	2.9	3	0	0	3	3	3	1	Transcription	factor	S-II	(TFIIS)
RNA_POL_M_15KD	PF02150.16	gi|257051319|ref|YP_003129152.1|	-	6.4e-08	32.3	8.2	9.5e-08	31.8	0.8	2.9	3	0	0	3	3	3	1	RNA	polymerases	M/15	Kd	subunit
DZR	PF12773.7	gi|257051319|ref|YP_003129152.1|	-	9.7e-05	22.3	10.4	0.00059	19.8	0.8	3.0	2	1	0	2	2	2	1	Double	zinc	ribbon
TF_Zn_Ribbon	PF08271.12	gi|257051319|ref|YP_003129152.1|	-	0.00015	21.2	10.3	0.0076	15.7	0.4	3.4	2	2	0	2	2	2	1	TFIIB	zinc-binding
zf-ribbon_3	PF13248.6	gi|257051319|ref|YP_003129152.1|	-	0.00017	20.9	6.3	0.0059	16.0	0.6	3.2	3	0	0	3	3	3	1	zinc-ribbon	domain
Prok-RING_1	PF14446.6	gi|257051319|ref|YP_003129152.1|	-	0.00054	19.8	0.2	0.00054	19.8	0.2	2.6	3	0	0	3	3	3	1	Prokaryotic	RING	finger	family	1
OrfB_Zn_ribbon	PF07282.11	gi|257051319|ref|YP_003129152.1|	-	0.0016	18.3	11.1	0.014	15.3	0.9	2.6	2	1	0	2	2	2	2	Putative	transposase	DNA-binding	domain
zf-RING_7	PF02591.15	gi|257051319|ref|YP_003129152.1|	-	0.006	16.7	8.1	1.4	9.2	0.1	3.8	3	1	0	3	3	3	1	C4-type	zinc	ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|257051319|ref|YP_003129152.1|	-	0.0076	16.2	4.9	0.084	12.9	0.7	2.4	2	0	0	2	2	2	1	Transposase	zinc-ribbon	domain
PhnA_Zn_Ribbon	PF08274.12	gi|257051319|ref|YP_003129152.1|	-	0.0078	16.1	9.7	0.22	11.5	0.6	3.2	3	0	0	3	3	3	2	PhnA	Zinc-Ribbon
Nudix_N_2	PF14803.6	gi|257051319|ref|YP_003129152.1|	-	0.01	15.7	4.6	6.3	6.8	0.1	3.5	3	0	0	3	3	3	0	Nudix	N-terminal
Rubredoxin_2	PF18073.1	gi|257051319|ref|YP_003129152.1|	-	0.023	14.4	11.4	0.93	9.3	0.1	4.0	4	0	0	4	4	4	0	Rubredoxin	metal	binding	domain
zf_UBZ	PF18439.1	gi|257051319|ref|YP_003129152.1|	-	0.031	13.9	10.8	1.5	8.4	0.2	3.8	3	1	1	4	4	4	0	Ubiquitin-Binding	Zinc	Finger
zf-RRN7	PF11781.8	gi|257051319|ref|YP_003129152.1|	-	0.037	13.7	10.5	4.1	7.2	1.0	4.1	4	0	0	4	4	4	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
zinc-ribbons_6	PF07191.12	gi|257051319|ref|YP_003129152.1|	-	0.093	12.7	8.4	0.25	11.3	0.4	2.6	1	1	1	2	2	2	0	zinc-ribbons
bcl-2I13	PF12201.8	gi|257051319|ref|YP_003129152.1|	-	0.1	12.5	0.1	0.13	12.2	0.1	1.1	1	0	0	1	1	1	0	Bcl2-interacting	killer,	BH3-domain	containing
TackOD1	PF18551.1	gi|257051319|ref|YP_003129152.1|	-	0.1	12.3	6.8	0.34	10.6	0.2	2.6	2	1	0	2	2	2	0	Thaumarchaeal	output	domain	1
zinc_ribbon_2	PF13240.6	gi|257051319|ref|YP_003129152.1|	-	0.16	11.8	10.1	4.2	7.2	0.2	3.6	4	0	0	4	4	4	0	zinc-ribbon	domain
PHD	PF00628.29	gi|257051319|ref|YP_003129152.1|	-	0.3	11.0	10.1	2.4	8.1	2.2	3.1	3	0	0	3	3	3	0	PHD-finger
HypA	PF01155.19	gi|257051319|ref|YP_003129152.1|	-	0.67	10.0	10.1	12	6.0	5.1	2.7	1	1	1	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-UBP	PF02148.19	gi|257051319|ref|YP_003129152.1|	-	0.75	10.2	9.2	1.9	8.9	1.5	2.4	2	1	0	2	2	2	0	Zn-finger	in	ubiquitin-hydrolases	and	other	protein
DNA_RNApol_7kD	PF03604.13	gi|257051319|ref|YP_003129152.1|	-	0.95	9.2	12.0	6.3	6.6	0.3	4.0	4	0	0	4	4	4	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
Zn_ribbon_SprT	PF17283.2	gi|257051319|ref|YP_003129152.1|	-	0.97	9.4	6.0	2.8	7.9	0.0	3.1	3	0	0	3	3	3	0	SprT-like	zinc	ribbon	domain
zinc_ribbon_4	PF13717.6	gi|257051319|ref|YP_003129152.1|	-	1.3	9.0	9.0	0.66	10.0	0.5	3.5	3	1	0	3	3	3	0	zinc-ribbon	domain
Ribosomal_L37ae	PF01780.19	gi|257051319|ref|YP_003129152.1|	-	1.4	9.1	6.5	3.9	7.6	0.5	2.6	2	1	0	2	2	2	0	Ribosomal	L37ae	protein	family
zf-RING_5	PF14634.6	gi|257051319|ref|YP_003129152.1|	-	2.1	8.4	8.6	14	5.7	0.7	2.9	2	2	1	3	3	3	0	zinc-RING	finger	domain
Stc1	PF12898.7	gi|257051319|ref|YP_003129152.1|	-	3.1	8.4	8.7	6.5	7.4	2.7	2.5	1	1	1	2	2	2	0	Stc1	domain
C1_1	PF00130.22	gi|257051319|ref|YP_003129152.1|	-	3.5	7.6	11.6	0.39	10.6	2.0	2.7	2	1	0	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
zf-ACC	PF17848.1	gi|257051319|ref|YP_003129152.1|	-	6.2	7.0	13.2	7	6.8	0.4	3.9	4	0	0	4	4	4	0	Acetyl-coA	carboxylase	zinc	finger	domain
SPC25	PF06703.11	gi|257051320|ref|YP_003129153.1|	-	2.1	8.1	3.3	1.2	9.0	0.1	1.9	2	0	0	2	2	2	0	Microsomal	signal	peptidase	25	kDa	subunit	(SPC25)
DUF4956	PF16316.5	gi|257051320|ref|YP_003129153.1|	-	6.2	6.5	8.3	3.6	7.2	1.4	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4956)
Oxidored_q2	PF00420.24	gi|257051320|ref|YP_003129153.1|	-	9.5	5.9	10.6	1.5e+02	2.0	10.7	2.3	1	1	0	1	1	1	0	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
NTP_transf_2	PF01909.23	gi|257051322|ref|YP_003129155.1|	-	1.4e-08	34.9	0.0	2.2e-08	34.3	0.0	1.5	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
Polbeta	PF18765.1	gi|257051322|ref|YP_003129155.1|	-	1.8e-08	34.4	0.0	8.7e-08	32.2	0.0	2.0	2	0	0	2	2	2	1	Polymerase	beta,	Nucleotidyltransferase
MarR_2	PF12802.7	gi|257051322|ref|YP_003129155.1|	-	0.00013	21.8	0.1	0.00049	19.9	0.1	2.0	1	0	0	1	1	1	1	MarR	family
Adenyl_cycl_N	PF12633.7	gi|257051322|ref|YP_003129155.1|	-	0.0055	16.6	0.0	0.01	15.8	0.0	1.4	1	0	0	1	1	1	1	Adenylate	cyclase	NT	domain
DUF4423	PF14394.6	gi|257051322|ref|YP_003129155.1|	-	0.078	12.7	0.0	0.18	11.5	0.0	1.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4423)
Cdc6_C	PF09079.11	gi|257051322|ref|YP_003129155.1|	-	0.1	12.6	0.0	0.5	10.4	0.0	1.9	2	0	0	2	2	2	0	CDC6,	C	terminal	winged	helix	domain
DUF3572	PF12096.8	gi|257051323|ref|YP_003129156.1|	-	0.0011	19.1	0.0	0.86	9.9	0.0	2.3	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF3572)
HEPN	PF05168.14	gi|257051323|ref|YP_003129156.1|	-	0.0013	18.8	0.1	0.0019	18.3	0.1	1.2	1	0	0	1	1	1	1	HEPN	domain
Csc2	PF18320.1	gi|257051326|ref|YP_003129159.1|	-	0.27	10.2	1.6	0.36	9.7	0.1	1.8	2	0	0	2	2	2	0	Csc2	Crispr
HNH_repeat	PF18780.1	gi|257051328|ref|YP_003129161.1|	-	9.4e-17	60.5	0.3	0.00016	21.4	0.0	3.3	3	0	0	3	3	3	3	Homing	endonuclease	repeat
HNH	PF01844.23	gi|257051328|ref|YP_003129161.1|	-	2.8e-10	40.2	6.7	4.9e-10	39.4	6.7	1.4	1	0	0	1	1	1	1	HNH	endonuclease
HNH_2	PF13391.6	gi|257051328|ref|YP_003129161.1|	-	0.018	15.2	2.0	0.052	13.7	2.0	1.8	1	0	0	1	1	1	0	HNH	endonuclease
Helitron_like_N	PF14214.6	gi|257051329|ref|YP_003129162.1|	-	0.13	12.5	0.0	0.29	11.3	0.0	1.6	1	0	0	1	1	1	0	Helitron	helicase-like	domain	at	N-terminus
Met_10	PF02475.16	gi|257051330|ref|YP_003129163.1|	-	9.4e-59	198.5	0.1	1.2e-58	198.2	0.1	1.1	1	0	0	1	1	1	1	Met-10+	like-protein
Trm5_N	PF18093.1	gi|257051330|ref|YP_003129163.1|	-	1.8e-10	40.5	0.1	4.3e-10	39.3	0.1	1.6	1	0	0	1	1	1	1	tRNA	methyltransferase	5	N-terminal	domain
Methyltransf_25	PF13649.6	gi|257051330|ref|YP_003129163.1|	-	1.6e-08	35.1	0.1	7.8e-08	32.9	0.0	2.0	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_15	PF09445.10	gi|257051330|ref|YP_003129163.1|	-	8.3e-08	32.0	0.0	1.3e-07	31.4	0.0	1.4	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
MTS	PF05175.14	gi|257051330|ref|YP_003129163.1|	-	1.4e-06	27.9	0.0	2.4e-06	27.2	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_31	PF13847.6	gi|257051330|ref|YP_003129163.1|	-	9.4e-06	25.5	0.0	1.8e-05	24.6	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|257051330|ref|YP_003129163.1|	-	5e-05	23.9	0.1	0.00016	22.2	0.0	1.9	2	0	0	2	2	2	1	Methyltransferase	domain
PrmA	PF06325.13	gi|257051330|ref|YP_003129163.1|	-	0.0001	21.8	0.0	0.00015	21.2	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_24	PF13578.6	gi|257051330|ref|YP_003129163.1|	-	0.00017	22.6	0.3	0.0027	18.7	0.0	2.4	2	0	0	2	2	2	1	Methyltransferase	domain
Cons_hypoth95	PF03602.15	gi|257051330|ref|YP_003129163.1|	-	0.0013	18.4	0.0	0.0024	17.6	0.0	1.3	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
SRP54_N	PF02881.19	gi|257051330|ref|YP_003129163.1|	-	0.0062	16.7	2.0	0.2	11.9	0.3	2.4	2	0	0	2	2	2	1	SRP54-type	protein,	helical	bundle	domain
UPF0020	PF01170.18	gi|257051330|ref|YP_003129163.1|	-	0.0079	15.9	0.0	0.013	15.1	0.0	1.3	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Methyltr_RsmB-F	PF01189.17	gi|257051330|ref|YP_003129163.1|	-	0.011	15.4	0.0	0.019	14.6	0.0	1.4	1	0	0	1	1	1	0	16S	rRNA	methyltransferase	RsmB/F
TRM	PF02005.16	gi|257051330|ref|YP_003129163.1|	-	0.011	14.9	0.0	0.015	14.5	0.0	1.2	1	0	0	1	1	1	0	N2,N2-dimethylguanosine	tRNA	methyltransferase
Methyltransf_18	PF12847.7	gi|257051330|ref|YP_003129163.1|	-	0.019	14.9	0.0	0.46	10.4	0.0	2.2	2	0	0	2	2	2	0	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|257051330|ref|YP_003129163.1|	-	0.036	13.9	0.0	0.1	12.4	0.0	1.6	1	1	0	1	1	1	0	Methyltransferase	domain
DNA_methylase	PF00145.17	gi|257051330|ref|YP_003129163.1|	-	0.24	10.7	0.0	0.31	10.3	0.0	1.1	1	0	0	1	1	1	0	C-5	cytosine-specific	DNA	methylase
TP_methylase	PF00590.20	gi|257051331|ref|YP_003129164.1|	-	2.9e-22	79.7	0.8	3.7e-22	79.3	0.8	1.1	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
GHL6	PF14871.6	gi|257051331|ref|YP_003129164.1|	-	0.17	12.0	0.0	0.65	10.1	0.0	1.8	2	0	0	2	2	2	0	Hypothetical	glycosyl	hydrolase	6
Exosortase_EpsH	PF09721.10	gi|257051332|ref|YP_003129165.1|	-	1.9e-12	47.3	17.4	1.9e-12	47.3	17.4	1.9	1	1	1	2	2	2	1	Transmembrane	exosortase	(Exosortase_EpsH)
TraQ	PF09679.10	gi|257051332|ref|YP_003129165.1|	-	0.13	12.2	1.5	0.41	10.6	1.5	1.8	1	0	0	1	1	1	0	Type-F	conjugative	transfer	system	pilin	chaperone	(TraQ)
DUF1834	PF08873.11	gi|257051332|ref|YP_003129165.1|	-	0.13	11.9	0.0	0.26	11.0	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1834)
DUF5518	PF17647.1	gi|257051334|ref|YP_003129167.1|	-	1.1e-19	70.8	21.6	1.2e-19	70.6	21.6	1.0	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF5518)
Phage_holin_2_3	PF16080.5	gi|257051334|ref|YP_003129167.1|	-	0.23	11.2	3.4	12	5.7	0.5	2.7	3	0	0	3	3	3	0	Bacteriophage	holin	family	HP1
Glyoxalase	PF00903.25	gi|257051335|ref|YP_003129168.1|	-	6.8e-24	84.5	4.3	4.9e-15	55.9	0.9	2.2	2	0	0	2	2	2	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_4	PF13669.6	gi|257051335|ref|YP_003129168.1|	-	1.9e-11	44.2	2.2	6.8e-06	26.3	0.6	3.8	1	1	3	4	4	4	3	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_6	PF18029.1	gi|257051335|ref|YP_003129168.1|	-	4.3e-11	43.6	2.9	4.1e-06	27.5	0.5	2.2	2	0	0	2	2	2	2	Glyoxalase-like	domain
Glyoxalase_3	PF13468.6	gi|257051335|ref|YP_003129168.1|	-	3e-07	30.7	0.8	0.12	12.5	0.3	3.5	2	2	1	3	3	3	2	Glyoxalase-like	domain
Glyoxalase_2	PF12681.7	gi|257051335|ref|YP_003129168.1|	-	0.024	14.6	0.4	1.3	9.0	0.1	3.2	3	1	0	3	3	3	0	Glyoxalase-like	domain
Glyoxalase_5	PF14696.6	gi|257051335|ref|YP_003129168.1|	-	0.075	13.2	0.0	2.2	8.4	0.0	2.6	1	1	2	3	3	3	0	Hydroxyphenylpyruvate	dioxygenase,	HPPD,	N-terminal
TAT_signal	PF10518.9	gi|257051337|ref|YP_003129170.1|	-	0.076	12.9	3.6	0.16	11.8	3.6	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
S-AdoMet_synt_M	PF02772.16	gi|257051337|ref|YP_003129170.1|	-	0.1	12.9	0.0	0.17	12.2	0.0	1.3	1	0	0	1	1	1	0	S-adenosylmethionine	synthetase,	central	domain
MMR_HSR1_Xtn	PF16897.5	gi|257051338|ref|YP_003129171.1|	-	1.5e-29	102.1	0.9	3.7e-29	100.8	0.5	1.9	2	0	0	2	2	2	1	C-terminal	region	of	MMR_HSR1	domain
MMR_HSR1	PF01926.23	gi|257051338|ref|YP_003129171.1|	-	8.1e-24	83.9	0.0	1.7e-23	82.9	0.0	1.5	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
TGS	PF02824.21	gi|257051338|ref|YP_003129171.1|	-	3.8e-15	55.7	0.0	7.9e-15	54.7	0.0	1.6	1	0	0	1	1	1	1	TGS	domain
FeoB_N	PF02421.18	gi|257051338|ref|YP_003129171.1|	-	1.1e-13	51.1	0.5	1e-12	47.9	0.0	2.2	2	0	0	2	2	2	1	Ferrous	iron	transport	protein	B
RsgA_GTPase	PF03193.16	gi|257051338|ref|YP_003129171.1|	-	5e-07	29.8	0.0	0.012	15.5	0.0	2.6	2	0	0	2	2	2	2	RsgA	GTPase
Dynamin_N	PF00350.23	gi|257051338|ref|YP_003129171.1|	-	5.9e-06	26.4	0.8	0.12	12.4	0.1	2.6	2	1	1	3	3	3	2	Dynamin	family
MeaB	PF03308.16	gi|257051338|ref|YP_003129171.1|	-	0.0013	17.8	0.2	0.014	14.4	0.1	2.3	2	0	0	2	2	2	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
Arf	PF00025.21	gi|257051338|ref|YP_003129171.1|	-	0.028	13.9	0.0	1.2	8.6	0.0	2.3	2	0	0	2	2	2	0	ADP-ribosylation	factor	family
AAA_28	PF13521.6	gi|257051338|ref|YP_003129171.1|	-	0.057	13.7	0.0	0.14	12.4	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
ThiS	PF02597.20	gi|257051338|ref|YP_003129171.1|	-	0.061	14.0	0.7	0.3	11.7	0.0	2.4	3	1	0	3	3	2	0	ThiS	family
cobW	PF02492.19	gi|257051338|ref|YP_003129171.1|	-	0.066	12.8	0.5	3.7	7.1	0.0	2.6	3	0	0	3	3	3	0	CobW/HypB/UreG,	nucleotide-binding	domain
ABC_tran	PF00005.27	gi|257051338|ref|YP_003129171.1|	-	0.07	13.6	0.0	0.24	11.9	0.0	1.8	2	0	0	2	2	2	0	ABC	transporter
AAA_29	PF13555.6	gi|257051338|ref|YP_003129171.1|	-	0.13	12.0	0.1	0.41	10.4	0.1	1.8	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_18	PF13238.6	gi|257051338|ref|YP_003129171.1|	-	1.3	9.6	3.9	2	9.0	0.0	2.8	3	1	1	4	4	4	0	AAA	domain
ABC_tran_CTD	PF16326.5	gi|257051338|ref|YP_003129171.1|	-	2.9	8.2	7.7	0.44	10.8	3.4	1.9	2	0	0	2	2	1	0	ABC	transporter	C-terminal	domain
Ribosomal_L11	PF00298.19	gi|257051340|ref|YP_003129173.1|	-	5.9e-20	71.5	0.0	8.8e-20	71.0	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L11,	RNA	binding	domain
Ribosomal_L11_N	PF03946.14	gi|257051340|ref|YP_003129173.1|	-	3.4e-15	55.6	0.1	6.3e-15	54.8	0.1	1.5	1	0	0	1	1	1	1	Ribosomal	protein	L11,	N-terminal	domain
HATPase_c	PF02518.26	gi|257051341|ref|YP_003129174.1|	-	2.8e-14	53.5	0.0	5.8e-14	52.6	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
dCache_1	PF02743.18	gi|257051341|ref|YP_003129174.1|	-	3.6e-13	49.9	0.6	7.8e-13	48.8	0.6	1.6	1	0	0	1	1	1	1	Cache	domain
HATPase_c_2	PF13581.6	gi|257051341|ref|YP_003129174.1|	-	3.4e-09	36.7	0.2	8.7e-09	35.4	0.2	1.7	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
sCache_3_2	PF17203.4	gi|257051341|ref|YP_003129174.1|	-	0.0038	17.4	0.8	0.015	15.5	0.8	2.0	1	1	0	1	1	1	1	Single	cache	domain	3
HAMP	PF00672.25	gi|257051341|ref|YP_003129174.1|	-	0.005	17.2	0.0	0.012	15.9	0.0	1.7	1	0	0	1	1	1	1	HAMP	domain
Ribosomal_L1	PF00687.21	gi|257051342|ref|YP_003129175.1|	-	3e-41	141.4	0.0	3.6e-41	141.1	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L1p/L10e	family
Ribosomal_L10	PF00466.20	gi|257051343|ref|YP_003129176.1|	-	3.7e-20	71.9	0.0	6.2e-20	71.2	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L10
RL10P_insert	PF17777.1	gi|257051343|ref|YP_003129176.1|	-	1.7e-14	53.6	0.0	2.9e-14	52.8	0.0	1.4	1	0	0	1	1	1	1	Insertion	domain	in	60S	ribosomal	protein	L10P
ISG65-75	PF11727.8	gi|257051343|ref|YP_003129176.1|	-	0.22	10.7	2.3	0.34	10.1	2.3	1.3	1	0	0	1	1	1	0	Invariant	surface	glycoprotein
RNA_pol_3_Rpc31	PF11705.8	gi|257051343|ref|YP_003129176.1|	-	0.34	11.1	12.6	0.48	10.6	12.6	1.3	1	0	0	1	1	1	0	DNA-directed	RNA	polymerase	III	subunit	Rpc31
Cwf_Cwc_15	PF04889.12	gi|257051343|ref|YP_003129176.1|	-	2.4	7.8	10.0	3.7	7.2	10.0	1.3	1	0	0	1	1	1	0	Cwf15/Cwc15	cell	cycle	control	protein
Ribosomal_60s	PF00428.19	gi|257051344|ref|YP_003129177.1|	-	7e-14	52.2	18.4	1.1e-13	51.6	18.4	1.3	1	0	0	1	1	1	1	60s	Acidic	ribosomal	protein
RRN3	PF05327.11	gi|257051344|ref|YP_003129177.1|	-	0.0051	15.4	4.6	0.0057	15.3	4.6	1.0	1	0	0	1	1	1	1	RNA	polymerase	I	specific	transcription	initiation	factor	RRN3
NOA36	PF06524.12	gi|257051344|ref|YP_003129177.1|	-	1.7	7.9	9.7	1.9	7.7	9.7	1.1	1	0	0	1	1	1	0	NOA36	protein
CDC45	PF02724.14	gi|257051344|ref|YP_003129177.1|	-	5.4	5.2	6.7	5.9	5.0	6.7	1.0	1	0	0	1	1	1	0	CDC45-like	protein
Lactamase_B	PF00753.27	gi|257051345|ref|YP_003129178.1|	-	1.3e-11	44.9	12.1	2.7e-11	43.8	12.1	1.6	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Rhodanese	PF00581.20	gi|257051345|ref|YP_003129178.1|	-	1.8e-08	34.8	0.0	3.6e-08	33.9	0.0	1.5	1	0	0	1	1	1	1	Rhodanese-like	domain
Lactamase_B_2	PF12706.7	gi|257051345|ref|YP_003129178.1|	-	0.035	13.6	1.1	0.065	12.7	1.1	1.4	1	0	0	1	1	1	0	Beta-lactamase	superfamily	domain
Sulf_transp	PF04143.14	gi|257051346|ref|YP_003129179.1|	-	1.3e-13	51.2	10.7	2e-13	50.6	10.7	1.2	1	0	0	1	1	1	1	Sulphur	transport
Spec3	PF15795.5	gi|257051346|ref|YP_003129179.1|	-	0.069	13.7	3.0	0.095	13.2	0.1	2.1	2	0	0	2	2	2	0	Ectodermal	ciliogenesis	protein
DUF4231	PF14015.6	gi|257051346|ref|YP_003129179.1|	-	0.17	12.3	0.1	0.17	12.3	0.1	2.5	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF4231)
Trp_oprn_chp	PF09534.10	gi|257051346|ref|YP_003129179.1|	-	1.6	8.5	8.7	0.039	13.8	1.4	1.9	2	1	0	2	2	2	0	Tryptophan-associated	transmembrane	protein	(Trp_oprn_chp)
Sulf_transp	PF04143.14	gi|257051347|ref|YP_003129180.1|	-	1.9e-07	30.9	6.9	1.9e-07	30.9	6.9	2.1	1	1	0	2	2	2	2	Sulphur	transport
PHO4	PF01384.20	gi|257051348|ref|YP_003129181.1|	-	2.7e-43	148.3	33.8	4.1e-43	147.7	33.8	1.3	1	0	0	1	1	1	1	Phosphate	transporter	family
HATPase_c	PF02518.26	gi|257051349|ref|YP_003129182.1|	-	6.4e-18	65.3	0.2	1.1e-17	64.5	0.2	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|257051349|ref|YP_003129182.1|	-	8.4e-12	45.0	0.5	4.1e-11	42.7	0.2	2.4	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_9	PF13426.7	gi|257051349|ref|YP_003129182.1|	-	6.9e-10	39.1	0.0	1.5e-09	38.1	0.0	1.6	1	0	0	1	1	1	1	PAS	domain
PAS	PF00989.25	gi|257051349|ref|YP_003129182.1|	-	9e-10	38.6	0.0	2e-09	37.5	0.0	1.6	1	0	0	1	1	1	1	PAS	fold
PAS_4	PF08448.10	gi|257051349|ref|YP_003129182.1|	-	2.1e-09	37.6	0.1	6.6e-09	36.0	0.1	1.9	1	0	0	1	1	1	1	PAS	fold
Response_reg	PF00072.24	gi|257051349|ref|YP_003129182.1|	-	9.3e-09	35.4	0.0	2.5e-08	34.1	0.0	1.7	1	0	0	1	1	1	1	Response	regulator	receiver	domain
PAS_8	PF13188.7	gi|257051349|ref|YP_003129182.1|	-	0.00031	20.7	0.0	0.0011	19.0	0.0	2.0	1	0	0	1	1	1	1	PAS	domain
GAF	PF01590.26	gi|257051349|ref|YP_003129182.1|	-	0.0032	18.1	0.0	0.0075	16.9	0.0	1.7	1	0	0	1	1	1	1	GAF	domain
GAF_3	PF13492.6	gi|257051349|ref|YP_003129182.1|	-	0.0038	17.6	0.0	0.011	16.1	0.0	1.9	1	0	0	1	1	1	1	GAF	domain
HATPase_c_3	PF13589.6	gi|257051349|ref|YP_003129182.1|	-	0.0093	15.8	0.0	0.018	14.9	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.6	gi|257051349|ref|YP_003129182.1|	-	0.038	13.9	0.1	0.094	12.7	0.1	1.6	1	0	0	1	1	1	0	Histidine	kinase-like	ATPase	domain
HAS-barrel	PF09378.10	gi|257051349|ref|YP_003129182.1|	-	0.049	13.8	0.0	0.26	11.4	0.0	2.2	2	0	0	2	2	2	0	HAS	barrel	domain
PAS_3	PF08447.12	gi|257051349|ref|YP_003129182.1|	-	0.055	13.8	0.0	0.13	12.6	0.0	1.6	1	0	0	1	1	1	0	PAS	fold
Usp	PF00582.26	gi|257051350|ref|YP_003129183.1|	-	3.4e-37	128.1	0.2	3.4e-21	76.2	0.2	2.5	2	1	0	2	2	2	2	Universal	stress	protein	family
TauE	PF01925.19	gi|257051352|ref|YP_003129185.1|	-	5.3e-38	131.0	27.0	5.3e-38	131.0	27.0	1.7	1	1	0	1	1	1	1	Sulfite	exporter	TauE/SafE
DPRP	PF04244.13	gi|257051353|ref|YP_003129186.1|	-	8e-58	195.9	0.0	1.4e-57	195.1	0.0	1.5	1	0	0	1	1	1	1	Deoxyribodipyrimidine	photo-lyase-related	protein
FAD_binding_7	PF03441.14	gi|257051353|ref|YP_003129186.1|	-	0.017	14.6	0.3	0.035	13.6	0.3	1.5	1	0	0	1	1	1	0	FAD	binding	domain	of	DNA	photolyase
MttA_Hcf106	PF02416.16	gi|257051354|ref|YP_003129187.1|	-	1.4e-12	46.7	0.0	1.6e-12	46.5	0.0	1.2	1	0	0	1	1	1	1	mttA/Hcf106	family
DUF4148	PF13663.6	gi|257051354|ref|YP_003129187.1|	-	0.11	12.7	0.1	0.17	12.0	0.1	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4148)
AhpC-TSA	PF00578.21	gi|257051355|ref|YP_003129188.1|	-	7.2e-31	106.7	0.0	8.5e-31	106.5	0.0	1.0	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|257051355|ref|YP_003129188.1|	-	6e-24	84.4	0.0	6.7e-24	84.3	0.0	1.0	1	0	0	1	1	1	1	Redoxin
AhpC-TSA_2	PF13911.6	gi|257051355|ref|YP_003129188.1|	-	5.8e-05	23.2	0.0	0.0005	20.2	0.0	1.9	2	0	0	2	2	2	1	AhpC/TSA	antioxidant	enzyme
DUF899	PF05988.12	gi|257051355|ref|YP_003129188.1|	-	0.039	13.5	0.0	0.052	13.1	0.0	1.1	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF899)
DUF3103	PF11301.8	gi|257051355|ref|YP_003129188.1|	-	0.04	12.7	0.1	0.056	12.2	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3103)
HD	PF01966.22	gi|257051356|ref|YP_003129189.1|	-	4.2e-08	33.5	1.6	8.3e-08	32.5	1.6	1.6	1	0	0	1	1	1	1	HD	domain
NikR_C	PF08753.11	gi|257051357|ref|YP_003129190.1|	-	8.9e-20	70.6	1.5	1.3e-19	70.1	1.5	1.3	1	0	0	1	1	1	1	NikR	C	terminal	nickel	binding	domain
RHH_1	PF01402.21	gi|257051357|ref|YP_003129190.1|	-	1.4e-07	31.2	0.0	2.4e-07	30.4	0.0	1.4	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
HicB_lk_antitox	PF15919.5	gi|257051357|ref|YP_003129190.1|	-	0.0036	17.4	0.0	0.0065	16.6	0.0	1.5	1	0	0	1	1	1	1	HicB_like	antitoxin	of	bacterial	toxin-antitoxin	system
RHH_5	PF07878.11	gi|257051357|ref|YP_003129190.1|	-	0.027	14.4	0.0	0.053	13.4	0.0	1.4	1	0	0	1	1	1	0	CopG-like	RHH_1	or	ribbon-helix-helix	domain,	RHH_5
Arc	PF03869.14	gi|257051357|ref|YP_003129190.1|	-	0.031	14.1	0.1	0.054	13.4	0.1	1.3	1	0	0	1	1	1	0	Arc-like	DNA	binding	domain
RHH_8	PF17723.1	gi|257051357|ref|YP_003129190.1|	-	0.037	14.2	0.0	0.055	13.6	0.0	1.3	1	0	0	1	1	1	0	Ribbon-Helix-Helix	transcriptional	regulator	family
SurE	PF01975.17	gi|257051359|ref|YP_003129192.1|	-	5e-44	150.4	0.4	6.4e-44	150.1	0.4	1.1	1	0	0	1	1	1	1	Survival	protein	SurE
TraI_2	PF07514.11	gi|257051359|ref|YP_003129192.1|	-	0.048	12.6	0.0	0.071	12.0	0.0	1.2	1	0	0	1	1	1	0	Putative	helicase
Methyltransf_23	PF13489.6	gi|257051360|ref|YP_003129193.1|	-	4.6e-12	46.1	0.0	7.3e-12	45.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|257051360|ref|YP_003129193.1|	-	1.3e-09	38.7	0.0	2.4e-09	37.8	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|257051360|ref|YP_003129193.1|	-	1.5e-06	28.7	0.0	3e-06	27.8	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|257051360|ref|YP_003129193.1|	-	1.2e-05	25.9	0.0	2.5e-05	24.9	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Rsm22	PF09243.10	gi|257051360|ref|YP_003129193.1|	-	2.5e-05	23.7	0.0	3.8e-05	23.1	0.0	1.2	1	0	0	1	1	1	1	Mitochondrial	small	ribosomal	subunit	Rsm22
Methyltransf_31	PF13847.6	gi|257051360|ref|YP_003129193.1|	-	4.3e-05	23.3	0.0	0.00011	22.0	0.0	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
GidB	PF02527.15	gi|257051360|ref|YP_003129193.1|	-	0.017	14.4	0.1	0.049	13.0	0.1	1.7	1	1	0	1	1	1	0	rRNA	small	subunit	methyltransferase	G
MetW	PF07021.12	gi|257051360|ref|YP_003129193.1|	-	0.051	13.2	0.0	0.094	12.3	0.0	1.3	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
DREV	PF05219.12	gi|257051360|ref|YP_003129193.1|	-	0.077	12.1	0.0	0.14	11.2	0.0	1.3	1	0	0	1	1	1	0	DREV	methyltransferase
PDH	PF02153.17	gi|257051361|ref|YP_003129194.1|	-	5.7e-14	51.7	0.1	5.6e-13	48.5	0.1	1.9	1	1	0	1	1	1	1	Prephenate	dehydrogenase
F420_oxidored	PF03807.17	gi|257051361|ref|YP_003129194.1|	-	0.00016	22.2	0.1	0.00032	21.2	0.1	1.5	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
Sacchrp_dh_NADP	PF03435.18	gi|257051361|ref|YP_003129194.1|	-	0.001	19.3	0.1	0.0016	18.7	0.1	1.4	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
Shikimate_DH	PF01488.20	gi|257051361|ref|YP_003129194.1|	-	0.0016	18.5	0.1	0.0047	17.0	0.0	1.7	1	1	1	2	2	2	1	Shikimate	/	quinate	5-dehydrogenase
GFO_IDH_MocA	PF01408.22	gi|257051361|ref|YP_003129194.1|	-	0.0022	18.8	0.4	0.0051	17.6	0.1	1.9	2	0	0	2	2	2	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
TrkA_N	PF02254.18	gi|257051361|ref|YP_003129194.1|	-	0.0047	17.2	0.0	0.0088	16.3	0.0	1.5	1	0	0	1	1	1	1	TrkA-N	domain
NAD_binding_2	PF03446.15	gi|257051361|ref|YP_003129194.1|	-	0.032	14.4	0.1	0.063	13.4	0.1	1.6	1	0	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NAD_binding_7	PF13241.6	gi|257051361|ref|YP_003129194.1|	-	0.038	14.4	0.6	0.075	13.5	0.3	1.7	2	0	0	2	2	2	0	Putative	NAD(P)-binding
NAD_binding_10	PF13460.6	gi|257051361|ref|YP_003129194.1|	-	0.053	13.4	2.0	8.6	6.2	0.1	2.8	3	0	0	3	3	3	0	NAD(P)H-binding
3HCDH_N	PF02737.18	gi|257051361|ref|YP_003129194.1|	-	0.056	13.3	0.9	0.087	12.7	0.4	1.7	1	1	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
FAA_hydrolase	PF01557.18	gi|257051362|ref|YP_003129195.1|	-	1.2e-63	214.8	0.1	1.4e-63	214.5	0.1	1.1	1	0	0	1	1	1	1	Fumarylacetoacetate	(FAA)	hydrolase	family
DUF4154	PF13689.6	gi|257051362|ref|YP_003129195.1|	-	0.12	12.6	0.0	0.2	11.9	0.0	1.2	1	0	0	1	1	1	0	YfiR/HmsC-like
DUF2437	PF10370.9	gi|257051362|ref|YP_003129195.1|	-	0.14	13.1	0.3	0.14	13.1	0.3	2.7	3	1	0	3	3	3	0	Domain	of	unknown	function	(DUF2437)
Rad50_zn_hook	PF04423.14	gi|257051363|ref|YP_003129196.1|	-	0.079	12.8	0.1	0.12	12.3	0.1	1.4	1	0	0	1	1	1	0	Rad50	zinc	hook	motif
HMG-CoA_red	PF00368.18	gi|257051364|ref|YP_003129197.1|	-	4.3e-126	420.8	6.1	4.8e-126	420.7	6.1	1.0	1	0	0	1	1	1	1	Hydroxymethylglutaryl-coenzyme	A	reductase
Rrf2	PF02082.20	gi|257051367|ref|YP_003129200.1|	-	0.01	16.1	0.1	0.029	14.7	0.0	1.7	2	0	0	2	2	2	0	Transcriptional	regulator
DUF2072	PF09845.9	gi|257051367|ref|YP_003129200.1|	-	0.077	13.3	0.1	0.11	12.8	0.1	1.3	1	0	0	1	1	1	0	Zn-ribbon	containing	protein
TerY_C	PF15616.6	gi|257051367|ref|YP_003129200.1|	-	0.13	12.3	0.2	0.2	11.8	0.2	1.3	1	0	0	1	1	1	0	TerY-C	metal	binding	domain
Zn_Tnp_IS91	PF14319.6	gi|257051367|ref|YP_003129200.1|	-	0.15	12.1	0.3	0.28	11.3	0.3	1.4	1	0	0	1	1	1	0	Transposase	zinc-binding	domain
FYDLN_acid	PF09538.10	gi|257051367|ref|YP_003129200.1|	-	0.21	12.3	3.8	0.43	11.3	3.7	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(FYDLN_acid)
HypA	PF01155.19	gi|257051367|ref|YP_003129200.1|	-	0.21	11.6	0.3	0.37	10.8	0.3	1.3	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-CSL	PF05207.13	gi|257051367|ref|YP_003129200.1|	-	0.25	11.1	1.8	13	5.6	0.4	2.5	2	0	0	2	2	2	0	CSL	zinc	finger
Acetyltransf_10	PF13673.7	gi|257051368|ref|YP_003129201.1|	-	1.2e-26	93.1	0.1	1.4e-26	92.9	0.1	1.0	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|257051368|ref|YP_003129201.1|	-	2.2e-15	56.9	0.2	2.9e-15	56.5	0.2	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|257051368|ref|YP_003129201.1|	-	1.1e-13	51.4	0.1	1.8e-13	50.7	0.1	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.7	gi|257051368|ref|YP_003129201.1|	-	5.9e-06	26.5	0.0	8.1e-06	26.0	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|257051368|ref|YP_003129201.1|	-	1.4e-05	24.9	0.0	2.5e-05	24.2	0.0	1.4	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_9	PF13527.7	gi|257051368|ref|YP_003129201.1|	-	4.4e-05	23.6	0.2	0.00021	21.4	0.2	1.9	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_5	PF13444.6	gi|257051368|ref|YP_003129201.1|	-	5.3e-05	23.9	0.3	0.00012	22.7	0.2	1.8	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|257051368|ref|YP_003129201.1|	-	0.00029	20.9	0.1	0.00091	19.3	0.1	1.8	2	0	0	2	2	2	1	GCN5-related	N-acetyl-transferase
Iso_dh	PF00180.20	gi|257051369|ref|YP_003129202.1|	-	5.4e-103	344.8	0.0	7e-103	344.4	0.0	1.1	1	0	0	1	1	1	1	Isocitrate/isopropylmalate	dehydrogenase
CAF1A	PF12253.8	gi|257051369|ref|YP_003129202.1|	-	0.37	11.0	4.6	1.9	8.7	4.6	2.3	1	1	0	1	1	1	0	Chromatin	assembly	factor	1	subunit	A
Thioredoxin_4	PF13462.6	gi|257051371|ref|YP_003129204.1|	-	2.9e-17	63.3	0.0	3.8e-17	62.9	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
DSBA	PF01323.20	gi|257051371|ref|YP_003129204.1|	-	2.4e-07	30.7	1.1	3.5e-07	30.2	0.2	1.8	2	0	0	2	2	2	1	DSBA-like	thioredoxin	domain
Thioredoxin_3	PF13192.6	gi|257051371|ref|YP_003129204.1|	-	0.053	13.6	0.0	0.29	11.2	0.0	2.1	2	0	0	2	2	2	0	Thioredoxin	domain
Trm56	PF01994.16	gi|257051372|ref|YP_003129205.1|	-	3.8e-46	155.9	0.0	4.8e-46	155.6	0.0	1.1	1	0	0	1	1	1	1	tRNA	ribose	2'-O-methyltransferase,	aTrm56
rRNA_methylase	PF06962.12	gi|257051372|ref|YP_003129205.1|	-	0.13	12.2	0.0	0.25	11.3	0.0	1.4	1	0	0	1	1	1	0	Putative	rRNA	methylase
TFIIE_alpha	PF02002.17	gi|257051373|ref|YP_003129206.1|	-	2.5e-19	69.1	0.0	4.2e-19	68.4	0.0	1.4	1	0	0	1	1	1	1	TFIIE	alpha	subunit
Zn-ribbon_8	PF09723.10	gi|257051373|ref|YP_003129206.1|	-	0.00027	21.0	1.7	0.00075	19.6	1.7	1.8	1	1	1	2	2	2	2	Zinc	ribbon	domain
Sigma70_r3	PF04539.16	gi|257051373|ref|YP_003129206.1|	-	0.0029	17.6	0.0	0.006	16.7	0.0	1.6	1	0	0	1	1	1	1	Sigma-70	region	3
TF_Zn_Ribbon	PF08271.12	gi|257051373|ref|YP_003129206.1|	-	0.0042	16.6	3.8	0.015	14.8	3.0	2.4	1	1	1	2	2	2	2	TFIIB	zinc-binding
HypA	PF01155.19	gi|257051373|ref|YP_003129206.1|	-	0.0084	16.1	0.0	0.012	15.7	0.0	1.3	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf_UBZ	PF18439.1	gi|257051373|ref|YP_003129206.1|	-	0.011	15.3	0.5	3.4	7.3	0.1	2.4	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
zf-HYPF	PF07503.12	gi|257051373|ref|YP_003129206.1|	-	0.017	14.9	0.2	1.7	8.5	0.0	2.5	2	0	0	2	2	2	0	HypF	finger
PhnA_Zn_Ribbon	PF08274.12	gi|257051373|ref|YP_003129206.1|	-	0.03	14.3	1.1	2.1	8.4	0.1	2.4	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
DNA_ligase_ZBD	PF03119.16	gi|257051373|ref|YP_003129206.1|	-	0.053	13.6	0.0	0.1	12.6	0.0	1.5	1	0	0	1	1	1	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zinc-ribbons_6	PF07191.12	gi|257051373|ref|YP_003129206.1|	-	0.055	13.5	0.1	0.089	12.8	0.1	1.3	1	0	0	1	1	1	0	zinc-ribbons
NRDD	PF13597.6	gi|257051373|ref|YP_003129206.1|	-	0.062	12.1	0.0	0.075	11.8	0.0	1.1	1	0	0	1	1	1	0	Anaerobic	ribonucleoside-triphosphate	reductase
DZR	PF12773.7	gi|257051373|ref|YP_003129206.1|	-	0.067	13.2	0.3	0.14	12.2	0.3	1.5	1	1	0	1	1	1	0	Double	zinc	ribbon
Ogr_Delta	PF04606.12	gi|257051373|ref|YP_003129206.1|	-	0.099	12.6	0.2	6.8	6.8	0.0	2.2	2	0	0	2	2	2	0	Ogr/Delta-like	zinc	finger
zf-ribbon_3	PF13248.6	gi|257051373|ref|YP_003129206.1|	-	0.2	11.1	1.2	4.1	7.0	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
TFIIS_C	PF01096.18	gi|257051373|ref|YP_003129206.1|	-	0.27	11.1	0.8	11	5.9	0.1	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zf-Mss51	PF13824.6	gi|257051373|ref|YP_003129206.1|	-	0.34	11.0	3.8	4.5	7.5	2.3	2.6	1	1	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
DUF2110	PF09883.9	gi|257051374|ref|YP_003129207.1|	-	3.1e-95	318.0	0.0	3.7e-95	317.8	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2110)
MoCF_biosynth	PF00994.24	gi|257051376|ref|YP_003129209.1|	-	7.2e-36	123.0	1.0	1e-35	122.5	0.5	1.5	2	0	0	2	2	2	1	Probable	molybdopterin	binding	domain
DUF5419	PF17441.2	gi|257051376|ref|YP_003129209.1|	-	0.02	15.0	1.0	0.043	13.9	0.2	2.0	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5419)
Glyco_trans_4_4	PF13579.6	gi|257051376|ref|YP_003129209.1|	-	0.061	13.8	2.2	8.8	6.7	0.0	2.4	2	1	0	2	2	2	0	Glycosyl	transferase	4-like	domain
DnaJ_C	PF01556.18	gi|257051378|ref|YP_003129211.1|	-	5.9e-43	146.5	0.0	7.8e-43	146.1	0.0	1.2	1	0	0	1	1	1	1	DnaJ	C	terminal	domain
DnaJ	PF00226.31	gi|257051378|ref|YP_003129211.1|	-	1.2e-23	83.0	4.4	2.4e-23	82.0	4.4	1.5	1	0	0	1	1	1	1	DnaJ	domain
DnaJ_CXXCXGXG	PF00684.19	gi|257051378|ref|YP_003129211.1|	-	2.7e-12	46.9	15.9	5.5e-12	45.9	15.9	1.6	1	0	0	1	1	1	1	DnaJ	central	domain
A2L_zn_ribbon	PF08792.10	gi|257051378|ref|YP_003129211.1|	-	0.00038	20.1	5.4	1.3	8.8	0.2	3.3	2	1	1	3	3	3	2	A2L	zinc	ribbon	domain
RPT	PF13446.6	gi|257051378|ref|YP_003129211.1|	-	0.034	14.0	0.3	0.078	12.9	0.1	1.6	2	0	0	2	2	2	0	A	repeated	domain	in	UCH-protein
Anti-TRAP	PF15777.5	gi|257051378|ref|YP_003129211.1|	-	0.045	13.7	15.9	0.49	10.4	6.1	2.6	1	1	1	2	2	2	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
DUF5351	PF17302.2	gi|257051378|ref|YP_003129211.1|	-	0.057	13.6	23.5	1.3	9.2	0.4	4.4	4	0	0	4	4	4	0	Family	of	unknown	function	(DUF5351)
DZR	PF12773.7	gi|257051378|ref|YP_003129211.1|	-	0.21	11.6	11.7	0.72	9.9	11.7	1.8	1	1	0	1	1	1	0	Double	zinc	ribbon
CPP1-like	PF11833.8	gi|257051378|ref|YP_003129211.1|	-	0.45	10.1	1.2	8.7	5.9	0.6	2.2	2	0	0	2	2	2	0	Protein	CHAPERONE-LIKE	PROTEIN	OF	POR1-like
HypA	PF01155.19	gi|257051378|ref|YP_003129211.1|	-	1.4	9.0	10.9	1.6	8.8	1.7	2.3	1	1	1	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
GRP	PF07172.11	gi|257051378|ref|YP_003129211.1|	-	7.6	7.3	17.4	0.72	10.6	12.3	2.0	2	0	0	2	2	1	0	Glycine	rich	protein	family
HhH-GPD	PF00730.25	gi|257051379|ref|YP_003129212.1|	-	8.7e-15	55.1	0.0	1.1e-14	54.7	0.0	1.1	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH	PF00633.23	gi|257051379|ref|YP_003129212.1|	-	0.052	13.4	0.0	0.12	12.2	0.0	1.6	1	0	0	1	1	1	0	Helix-hairpin-helix	motif
HHH_5	PF14520.6	gi|257051379|ref|YP_003129212.1|	-	0.074	13.7	0.0	0.48	11.1	0.0	2.1	2	0	0	2	2	2	0	Helix-hairpin-helix	domain
Hexapep	PF00132.24	gi|257051380|ref|YP_003129213.1|	-	1e-12	47.2	3.4	8.2e-07	28.5	0.5	2.7	2	1	1	3	3	3	2	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|257051380|ref|YP_003129213.1|	-	5.8e-05	22.8	1.1	5.8e-05	22.8	1.1	2.9	2	1	0	2	2	2	1	Hexapeptide	repeat	of	succinyl-transferase
SATase_N	PF06426.14	gi|257051380|ref|YP_003129213.1|	-	0.0098	16.3	0.0	0.017	15.5	0.0	1.4	1	0	0	1	1	1	1	Serine	acetyltransferase,	N-terminal
ECH_1	PF00378.20	gi|257051381|ref|YP_003129214.1|	-	1.4e-64	217.8	0.0	1.6e-64	217.6	0.0	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
ECH_2	PF16113.5	gi|257051381|ref|YP_003129214.1|	-	1.2e-36	126.9	0.1	3.1e-34	118.9	0.2	2.0	1	1	1	2	2	2	2	Enoyl-CoA	hydratase/isomerase
Pro_CA	PF00484.19	gi|257051382|ref|YP_003129215.1|	-	5.8e-28	98.2	0.0	6.9e-28	97.9	0.0	1.1	1	0	0	1	1	1	1	Carbonic	anhydrase
HTH_24	PF13412.6	gi|257051383|ref|YP_003129216.1|	-	5.5e-14	51.5	0.2	8.7e-14	50.8	0.2	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|257051383|ref|YP_003129216.1|	-	1.7e-13	50.1	0.8	3.6e-13	49.1	0.7	1.6	2	0	0	2	2	1	1	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.12	gi|257051383|ref|YP_003129216.1|	-	7.9e-07	28.9	0.1	1.3e-06	28.2	0.1	1.4	1	0	0	1	1	1	1	HTH	domain
Sigma70_r4_2	PF08281.12	gi|257051383|ref|YP_003129216.1|	-	7.4e-06	25.5	0.1	1.3e-05	24.7	0.1	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_IclR	PF09339.10	gi|257051383|ref|YP_003129216.1|	-	1.8e-05	24.4	0.0	3.2e-05	23.7	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|257051383|ref|YP_003129216.1|	-	5.5e-05	23.0	0.1	0.00012	21.9	0.1	1.5	1	0	0	1	1	1	1	MarR	family
HTH_DeoR	PF08220.12	gi|257051383|ref|YP_003129216.1|	-	0.00016	21.4	0.2	0.0061	16.3	0.1	2.3	2	0	0	2	2	2	1	DeoR-like	helix-turn-helix	domain
Rrf2	PF02082.20	gi|257051383|ref|YP_003129216.1|	-	0.00022	21.5	0.0	0.00052	20.3	0.0	1.5	2	0	0	2	2	1	1	Transcriptional	regulator
Fe_dep_repress	PF01325.19	gi|257051383|ref|YP_003129216.1|	-	0.00024	21.2	0.0	0.00047	20.3	0.0	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_Crp_2	PF13545.6	gi|257051383|ref|YP_003129216.1|	-	0.00056	19.8	0.0	0.001	19.0	0.0	1.4	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_5	PF01022.20	gi|257051383|ref|YP_003129216.1|	-	0.00068	19.4	0.0	0.0011	18.8	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_28	PF13518.6	gi|257051383|ref|YP_003129216.1|	-	0.00077	19.5	0.0	0.0015	18.6	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_20	PF12840.7	gi|257051383|ref|YP_003129216.1|	-	0.00088	19.3	0.0	0.0023	17.9	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_27	PF13463.6	gi|257051383|ref|YP_003129216.1|	-	0.0012	19.3	0.2	0.003	18.0	0.1	1.7	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_Tnp_ISL3	PF13542.6	gi|257051383|ref|YP_003129216.1|	-	0.0027	17.1	0.1	0.0062	15.9	0.1	1.7	2	0	0	2	2	2	1	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_Mga	PF08280.11	gi|257051383|ref|YP_003129216.1|	-	0.0038	17.2	0.0	0.0057	16.7	0.0	1.3	1	0	0	1	1	1	1	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
Put_DNA-bind_N	PF06971.13	gi|257051383|ref|YP_003129216.1|	-	0.0045	17.0	0.1	0.0093	16.0	0.1	1.4	1	0	0	1	1	1	1	Putative	DNA-binding	protein	N-terminus
HTH_23	PF13384.6	gi|257051383|ref|YP_003129216.1|	-	0.0048	16.7	0.1	0.0094	15.7	0.1	1.5	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_36	PF13730.6	gi|257051383|ref|YP_003129216.1|	-	0.0058	16.6	0.0	0.0095	15.9	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_10	PF04967.12	gi|257051383|ref|YP_003129216.1|	-	0.021	14.6	0.1	0.036	13.9	0.1	1.4	1	0	0	1	1	1	0	HTH	DNA	binding	domain
HTH_19	PF12844.7	gi|257051383|ref|YP_003129216.1|	-	0.023	14.7	0.2	0.082	12.9	0.2	1.9	1	1	0	1	1	1	0	Helix-turn-helix	domain
MarR	PF01047.22	gi|257051383|ref|YP_003129216.1|	-	0.023	14.6	0.0	0.066	13.1	0.0	1.7	2	0	0	2	2	2	0	MarR	family
GntR	PF00392.21	gi|257051383|ref|YP_003129216.1|	-	0.028	14.1	0.0	0.072	12.8	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_38	PF13936.6	gi|257051383|ref|YP_003129216.1|	-	0.052	13.3	0.2	0.1	12.4	0.2	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_29	PF13551.6	gi|257051383|ref|YP_003129216.1|	-	0.067	13.2	0.0	0.11	12.5	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_3	PF01381.22	gi|257051383|ref|YP_003129216.1|	-	0.086	12.9	0.1	0.18	11.9	0.1	1.5	1	0	0	1	1	1	0	Helix-turn-helix
HTH_30	PF13556.6	gi|257051383|ref|YP_003129216.1|	-	0.089	12.6	0.2	0.22	11.3	0.1	1.6	2	0	0	2	2	1	0	PucR	C-terminal	helix-turn-helix	domain
HTH_1	PF00126.27	gi|257051383|ref|YP_003129216.1|	-	0.095	12.7	0.1	0.18	11.8	0.1	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
Sigma70_r4	PF04545.16	gi|257051383|ref|YP_003129216.1|	-	0.12	12.0	0.0	0.18	11.3	0.0	1.3	1	0	0	1	1	1	0	Sigma-70,	region	4
TrmB	PF01978.19	gi|257051383|ref|YP_003129216.1|	-	0.14	12.0	0.1	0.41	10.6	0.0	1.8	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_12	PF08461.10	gi|257051383|ref|YP_003129216.1|	-	0.15	12.0	0.3	0.5	10.3	0.3	2.0	1	1	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
Replic_Relax	PF13814.6	gi|257051383|ref|YP_003129216.1|	-	0.15	12.1	0.0	0.23	11.5	0.0	1.2	1	0	0	1	1	1	0	Replication-relaxation
Proton_antipo_M	PF00361.20	gi|257051384|ref|YP_003129217.1|	-	6.3e-38	130.6	13.7	6.3e-38	130.6	13.7	1.8	2	0	0	2	2	2	1	Proton-conducting	membrane	transporter
Proton_antipo_N	PF00662.20	gi|257051384|ref|YP_003129217.1|	-	1.2e-08	34.9	0.3	1.2e-08	34.9	0.3	2.6	2	0	0	2	2	2	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
DUF2309	PF10070.9	gi|257051385|ref|YP_003129218.1|	-	5e-263	874.9	0.0	5.7e-263	874.7	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2309)
Hexapep	PF00132.24	gi|257051386|ref|YP_003129219.1|	-	4.9e-09	35.6	0.4	3.9e-07	29.5	0.2	3.2	3	0	0	3	3	3	1	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|257051386|ref|YP_003129219.1|	-	1e-08	34.8	1.4	1.8e-06	27.6	0.2	3.1	3	0	0	3	3	3	1	Hexapeptide	repeat	of	succinyl-transferase
MS_channel	PF00924.18	gi|257051387|ref|YP_003129220.1|	-	2.3e-16	59.9	0.6	2.3e-16	59.9	0.6	2.5	2	1	0	3	3	3	1	Mechanosensitive	ion	channel
TM_helix	PF05552.12	gi|257051387|ref|YP_003129220.1|	-	0.011	15.7	1.3	0.25	11.3	0.2	3.2	3	0	0	3	3	3	0	Conserved	TM	helix
DUF4713	PF15831.5	gi|257051387|ref|YP_003129220.1|	-	0.14	12.6	0.6	0.14	12.6	0.6	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4713)
MIG-14_Wnt-bd	PF06664.12	gi|257051387|ref|YP_003129220.1|	-	1	8.5	11.4	0.078	12.2	4.4	2.0	1	1	1	2	2	2	0	Wnt-binding	factor	required	for	Wnt	secretion
DisA_N	PF02457.16	gi|257051388|ref|YP_003129221.1|	-	2.4e-21	75.5	0.0	3.7e-21	74.9	0.0	1.3	1	0	0	1	1	1	1	DisA	bacterial	checkpoint	controller	nucleotide-binding
Cellulase	PF00150.18	gi|257051389|ref|YP_003129222.1|	-	4.8e-26	91.8	0.7	6.6e-26	91.4	0.7	1.2	1	0	0	1	1	1	1	Cellulase	(glycosyl	hydrolase	family	5)
TAT_signal	PF10518.9	gi|257051389|ref|YP_003129222.1|	-	0.0016	18.2	0.7	0.0032	17.3	0.7	1.5	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
EF-hand_6	PF13405.6	gi|257051389|ref|YP_003129222.1|	-	0.18	11.8	1.1	0.61	10.2	0.1	2.3	2	0	0	2	2	2	0	EF-hand	domain
TrmB	PF01978.19	gi|257051391|ref|YP_003129224.1|	-	0.0019	18.1	0.0	0.0026	17.6	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|257051391|ref|YP_003129224.1|	-	0.0087	15.9	0.0	0.015	15.2	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_Crp_2	PF13545.6	gi|257051391|ref|YP_003129224.1|	-	0.02	14.8	0.0	0.026	14.5	0.0	1.4	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_11	PF08279.12	gi|257051391|ref|YP_003129224.1|	-	0.057	13.4	0.0	0.1	12.6	0.0	1.4	1	0	0	1	1	1	0	HTH	domain
HTH_3	PF01381.22	gi|257051391|ref|YP_003129224.1|	-	0.11	12.6	0.0	0.31	11.1	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix
COX3	PF00510.18	gi|257051392|ref|YP_003129225.1|	-	1.1e-34	120.5	16.3	1.7e-34	119.9	16.3	1.3	1	0	0	1	1	1	1	Cytochrome	c	oxidase	subunit	III
zf-C2H2	PF00096.26	gi|257051394|ref|YP_003129227.1|	-	0.011	16.2	0.1	0.015	15.7	0.1	1.2	1	0	0	1	1	1	0	Zinc	finger,	C2H2	type
FYDLN_acid	PF09538.10	gi|257051394|ref|YP_003129227.1|	-	0.022	15.4	0.0	0.027	15.1	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(FYDLN_acid)
zf-RING_7	PF02591.15	gi|257051394|ref|YP_003129227.1|	-	0.073	13.3	0.2	0.14	12.4	0.2	1.5	1	0	0	1	1	1	0	C4-type	zinc	ribbon	domain
zinc_ribbon_9	PF14369.6	gi|257051394|ref|YP_003129227.1|	-	0.1	12.9	0.1	0.15	12.3	0.1	1.4	1	0	0	1	1	1	0	zinc-ribbon
ResIII	PF04851.15	gi|257051395|ref|YP_003129228.1|	-	3e-26	92.5	0.0	3.7e-25	88.9	0.0	2.1	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
ERCC3_RAD25_C	PF16203.5	gi|257051395|ref|YP_003129228.1|	-	1e-18	67.5	0.0	1.5e-18	66.9	0.0	1.2	1	0	0	1	1	1	1	ERCC3/RAD25/XPB	C-terminal	helicase
XPB_DRD	PF18458.1	gi|257051395|ref|YP_003129228.1|	-	4.2e-17	61.8	1.8	1.3e-16	60.2	1.8	1.9	1	0	0	1	1	1	1	Xeroderma	pigmentosum	group	B	helicase	damage	recognition	domain
Helicase_C	PF00271.31	gi|257051395|ref|YP_003129228.1|	-	4.3e-15	56.0	0.0	4.4e-14	52.8	0.0	2.2	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.29	gi|257051395|ref|YP_003129228.1|	-	1.6e-08	34.5	0.0	1.3e-07	31.6	0.0	2.3	2	1	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C_2	PF13307.6	gi|257051395|ref|YP_003129228.1|	-	0.00052	20.2	0.0	0.14	12.4	0.0	2.8	2	1	1	3	3	3	1	Helicase	C-terminal	domain
GrpE	PF01025.19	gi|257051396|ref|YP_003129229.1|	-	1.9e-39	135.0	10.0	5e-39	133.6	10.0	1.7	1	1	0	1	1	1	1	GrpE
Troponin	PF00992.20	gi|257051396|ref|YP_003129229.1|	-	3.5e-05	24.1	14.4	5.4e-05	23.5	14.4	1.3	1	0	0	1	1	1	1	Troponin
DUF641	PF04859.12	gi|257051396|ref|YP_003129229.1|	-	0.0022	18.3	3.3	0.0056	17.0	3.3	1.7	1	0	0	1	1	1	1	Plant	protein	of	unknown	function	(DUF641)
UPF0242	PF06785.11	gi|257051396|ref|YP_003129229.1|	-	0.0062	16.7	12.6	0.0088	16.2	12.6	1.3	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0242)	N-terminus
MPS2	PF17060.5	gi|257051396|ref|YP_003129229.1|	-	0.008	15.5	9.6	0.01	15.2	9.6	1.1	1	0	0	1	1	1	1	Monopolar	spindle	protein	2
Med9	PF07544.13	gi|257051396|ref|YP_003129229.1|	-	0.0087	16.1	2.9	0.0087	16.1	2.9	2.3	2	1	1	3	3	3	1	RNA	polymerase	II	transcription	mediator	complex	subunit	9
DUF327	PF03885.13	gi|257051396|ref|YP_003129229.1|	-	0.012	15.6	4.5	0.012	15.6	4.5	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF327)
FAM76	PF16046.5	gi|257051396|ref|YP_003129229.1|	-	0.014	14.8	8.3	0.02	14.3	8.3	1.2	1	0	0	1	1	1	0	FAM76	protein
Spc7	PF08317.11	gi|257051396|ref|YP_003129229.1|	-	0.016	14.1	16.2	0.018	13.9	15.4	1.4	1	1	0	1	1	1	0	Spc7	kinetochore	protein
Exonuc_VII_L	PF02601.15	gi|257051396|ref|YP_003129229.1|	-	0.021	14.4	7.2	0.028	14.0	7.2	1.1	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
Wtap	PF17098.5	gi|257051396|ref|YP_003129229.1|	-	0.029	14.3	4.6	0.029	14.3	4.6	2.2	1	1	1	2	2	2	0	WTAP/Mum2p	family
Atg14	PF10186.9	gi|257051396|ref|YP_003129229.1|	-	0.035	13.2	7.8	0.043	12.9	7.8	1.1	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
AAA_13	PF13166.6	gi|257051396|ref|YP_003129229.1|	-	0.045	12.4	5.6	0.054	12.1	5.6	1.2	1	0	0	1	1	1	0	AAA	domain
MCC-bdg_PDZ	PF10506.9	gi|257051396|ref|YP_003129229.1|	-	0.053	13.5	1.4	0.12	12.4	1.4	1.6	1	0	0	1	1	1	0	PDZ	domain	of	MCC-2	bdg	protein	for	Usher	syndrome
AcylCoA_dehyd_C	PF12186.8	gi|257051396|ref|YP_003129229.1|	-	0.089	12.9	2.9	0.93	9.6	0.8	2.8	3	0	0	3	3	3	0	Acyl-CoA	dehydrogenase	C	terminal
GAT	PF03127.14	gi|257051396|ref|YP_003129229.1|	-	0.11	12.8	5.7	0.29	11.5	5.5	1.9	1	1	0	1	1	1	0	GAT	domain
TMF_DNA_bd	PF12329.8	gi|257051396|ref|YP_003129229.1|	-	0.17	11.9	18.0	0.37	10.8	14.5	2.9	1	1	1	2	2	2	0	TATA	element	modulatory	factor	1	DNA	binding
TMPIT	PF07851.13	gi|257051396|ref|YP_003129229.1|	-	0.19	11.0	2.8	0.24	10.6	2.8	1.3	1	0	0	1	1	1	0	TMPIT-like	protein
Fib_alpha	PF08702.10	gi|257051396|ref|YP_003129229.1|	-	0.24	11.6	4.0	0.37	11.0	3.1	1.7	1	1	1	2	2	1	0	Fibrinogen	alpha/beta	chain	family
DUF4407	PF14362.6	gi|257051396|ref|YP_003129229.1|	-	0.25	10.6	11.4	0.36	10.1	11.4	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
VitD-bind_III	PF09164.10	gi|257051396|ref|YP_003129229.1|	-	0.31	11.1	1.0	0.7	9.9	1.0	1.6	1	0	0	1	1	1	0	Vitamin	D	binding	protein,	domain	III
Fez1	PF06818.15	gi|257051396|ref|YP_003129229.1|	-	0.44	11.0	13.3	0.66	10.4	13.3	1.3	1	0	0	1	1	1	0	Fez1
DUF5063	PF16702.5	gi|257051396|ref|YP_003129229.1|	-	0.62	10.4	7.2	0.32	11.4	4.3	1.8	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF5063)
CMS1	PF14617.6	gi|257051396|ref|YP_003129229.1|	-	0.77	9.1	12.2	0.26	10.6	6.5	2.0	1	1	1	2	2	2	0	U3-containing	90S	pre-ribosomal	complex	subunit
HAUS6_N	PF14661.6	gi|257051396|ref|YP_003129229.1|	-	0.82	9.2	6.9	1.3	8.6	6.9	1.3	1	0	0	1	1	1	0	HAUS	augmin-like	complex	subunit	6	N-terminus
Golgin_A5	PF09787.9	gi|257051396|ref|YP_003129229.1|	-	1.2	8.5	14.9	1.7	8.0	14.9	1.3	1	0	0	1	1	1	0	Golgin	subfamily	A	member	5
CorA	PF01544.18	gi|257051396|ref|YP_003129229.1|	-	2.4	7.4	11.3	3.6	6.8	11.3	1.2	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
SlyX	PF04102.12	gi|257051396|ref|YP_003129229.1|	-	3	8.5	13.1	8	7.2	10.5	2.9	1	1	2	3	3	3	0	SlyX
FUSC	PF04632.12	gi|257051396|ref|YP_003129229.1|	-	4	5.9	7.9	5.4	5.4	7.9	1.2	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
DotU	PF09850.9	gi|257051396|ref|YP_003129229.1|	-	5.2	6.7	8.2	0.59	9.8	0.2	2.7	1	1	3	4	4	4	0	Type	VI	secretion	system	protein	DotU
zf-C4H2	PF10146.9	gi|257051396|ref|YP_003129229.1|	-	5.6	7.2	10.9	10	6.3	10.9	1.4	1	1	0	1	1	1	0	Zinc	finger-containing	protein
DUF572	PF04502.13	gi|257051396|ref|YP_003129229.1|	-	6.3	6.3	16.6	7.6	6.1	16.6	1.2	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF572)
LMBR1	PF04791.16	gi|257051396|ref|YP_003129229.1|	-	6.3	5.6	4.4	7.8	5.3	4.4	1.1	1	0	0	1	1	1	0	LMBR1-like	membrane	protein
OmpH	PF03938.14	gi|257051396|ref|YP_003129229.1|	-	6.4	7.1	16.1	16	5.8	16.0	1.8	1	1	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
Csm1_N	PF18504.1	gi|257051396|ref|YP_003129229.1|	-	6.8	7.1	16.6	0.23	11.8	6.8	3.1	2	1	1	3	3	3	0	Csm1	N-terminal	domain
HSP70	PF00012.20	gi|257051397|ref|YP_003129230.1|	-	1.9e-242	805.8	17.3	2.4e-240	798.8	17.3	2.0	1	1	0	1	1	1	1	Hsp70	protein
MreB_Mbl	PF06723.13	gi|257051397|ref|YP_003129230.1|	-	1.1e-18	67.1	0.2	1.1e-18	67.1	0.2	2.1	2	0	0	2	2	2	1	MreB/Mbl	protein
FGGY_C	PF02782.16	gi|257051397|ref|YP_003129230.1|	-	0.0017	18.1	0.0	0.0054	16.5	0.0	1.8	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	C-terminal	domain
StbA	PF06406.11	gi|257051397|ref|YP_003129230.1|	-	0.017	14.4	0.0	0.21	10.8	0.0	2.4	1	1	0	2	2	2	0	StbA	protein
FIVAR	PF07554.13	gi|257051397|ref|YP_003129230.1|	-	0.034	14.9	5.9	0.11	13.3	5.0	2.5	2	0	0	2	2	2	0	FIVAR	domain
Telomere_reg-2	PF10193.9	gi|257051397|ref|YP_003129230.1|	-	0.17	12.3	0.2	0.42	11.1	0.2	1.6	1	0	0	1	1	1	0	Telomere	length	regulation	protein
Pro_dh	PF01619.18	gi|257051397|ref|YP_003129230.1|	-	0.19	11.2	6.2	0.35	10.4	0.0	2.6	3	0	0	3	3	3	0	Proline	dehydrogenase
DUF1664	PF07889.12	gi|257051397|ref|YP_003129230.1|	-	0.74	9.9	5.4	0.69	10.0	2.9	2.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
MT0933_antitox	PF14013.6	gi|257051397|ref|YP_003129230.1|	-	1.5	9.2	8.7	0.2	12.0	0.7	3.5	2	1	1	3	3	3	0	MT0933-like	antitoxin	protein
DUF2570	PF10828.8	gi|257051397|ref|YP_003129230.1|	-	3.2	7.6	6.7	27	4.6	0.0	3.2	3	1	0	3	3	3	0	Protein	of	unknown	function	(DUF2570)
IR1-M	PF12185.8	gi|257051397|ref|YP_003129230.1|	-	3.6	7.6	7.7	12	5.9	1.3	2.9	1	1	1	2	2	2	0	Nup358/RanBP2	E3	ligase	domain
Aldo_ket_red	PF00248.21	gi|257051398|ref|YP_003129231.1|	-	7.7e-60	202.6	0.0	2.5e-57	194.3	0.0	2.0	1	1	0	1	1	1	1	Aldo/keto	reductase	family
Radical_SAM	PF04055.21	gi|257051398|ref|YP_003129231.1|	-	0.054	13.9	0.0	0.22	11.9	0.0	2.0	2	1	0	2	2	2	0	Radical	SAM	superfamily
PhoU	PF01895.19	gi|257051399|ref|YP_003129232.1|	-	2.8e-16	59.8	5.8	4.4e-13	49.5	0.2	2.4	2	0	0	2	2	2	2	PhoU	domain
MazE_antitoxin	PF04014.18	gi|257051399|ref|YP_003129232.1|	-	0.00013	21.8	0.0	0.00025	20.9	0.0	1.5	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
UPF0113	PF03657.13	gi|257051399|ref|YP_003129232.1|	-	0.055	13.7	0.0	0.12	12.7	0.0	1.5	1	0	0	1	1	1	0	UPF0113	PUA	domain
HisKA_7TM	PF16927.5	gi|257051400|ref|YP_003129233.1|	-	1.3e-16	61.3	20.3	1.7e-16	60.9	20.3	1.1	1	0	0	1	1	1	1	N-terminal	7TM	region	of	histidine	kinase
HATPase_c	PF02518.26	gi|257051400|ref|YP_003129233.1|	-	9.7e-15	55.0	0.1	2e-14	54.0	0.1	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|257051400|ref|YP_003129233.1|	-	4.1e-10	39.5	0.2	8.9e-10	38.5	0.2	1.6	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_4	PF08448.10	gi|257051400|ref|YP_003129233.1|	-	0.00024	21.3	2.9	0.00077	19.7	0.4	3.1	3	1	0	3	3	3	1	PAS	fold
HATPase_c_2	PF13581.6	gi|257051400|ref|YP_003129233.1|	-	0.02	14.9	0.0	0.046	13.7	0.0	1.6	1	0	0	1	1	1	0	Histidine	kinase-like	ATPase	domain
PAS_9	PF13426.7	gi|257051400|ref|YP_003129233.1|	-	0.075	13.3	0.0	0.15	12.4	0.0	1.5	1	0	0	1	1	1	0	PAS	domain
PAS	PF00989.25	gi|257051400|ref|YP_003129233.1|	-	0.1	12.6	0.0	0.9	9.6	0.0	2.3	2	0	0	2	2	2	0	PAS	fold
UvrA_inter	PF17760.1	gi|257051401|ref|YP_003129234.1|	-	3.7e-31	107.4	0.0	1.2e-30	105.8	0.0	2.0	1	0	0	1	1	1	1	UvrA	interaction	domain
UvrA_DNA-bind	PF17755.1	gi|257051401|ref|YP_003129234.1|	-	3.3e-30	104.7	0.1	3.6e-28	98.1	0.0	3.0	3	0	0	3	3	3	1	UvrA	DNA-binding	domain
ABC_tran	PF00005.27	gi|257051401|ref|YP_003129234.1|	-	8.8e-21	74.9	0.0	5.6e-10	39.9	0.0	4.4	3	2	0	3	3	3	3	ABC	transporter
SMC_N	PF02463.19	gi|257051401|ref|YP_003129234.1|	-	1.7e-11	44.0	0.0	0.054	12.9	0.0	4.1	3	1	0	3	3	3	3	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|257051401|ref|YP_003129234.1|	-	2.3e-08	33.7	0.1	0.0017	18.0	0.0	2.5	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|257051401|ref|YP_003129234.1|	-	6.2e-07	30.0	0.2	0.013	15.9	0.0	3.4	4	0	0	4	4	3	2	AAA	ATPase	domain
AAA_22	PF13401.6	gi|257051401|ref|YP_003129234.1|	-	1e-05	25.9	0.1	0.09	13.0	0.0	3.2	3	0	0	3	3	2	2	AAA	domain
AAA_21	PF13304.6	gi|257051401|ref|YP_003129234.1|	-	1.9e-05	24.6	9.5	0.028	14.2	0.1	4.3	4	0	0	4	4	4	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_23	PF13476.6	gi|257051401|ref|YP_003129234.1|	-	3.4e-05	24.4	0.0	0.025	15.1	0.0	2.6	2	0	0	2	2	2	1	AAA	domain
AAA_25	PF13481.6	gi|257051401|ref|YP_003129234.1|	-	7.5e-05	22.4	0.1	0.74	9.4	0.0	3.0	3	0	0	3	3	3	2	AAA	domain
AAA_15	PF13175.6	gi|257051401|ref|YP_003129234.1|	-	8.5e-05	22.4	0.0	0.094	12.4	0.0	3.7	4	0	0	4	4	4	1	AAA	ATPase	domain
DnaJ_CXXCXGXG	PF00684.19	gi|257051401|ref|YP_003129234.1|	-	8.9e-05	22.8	12.0	0.0083	16.5	1.1	3.8	4	0	0	4	4	3	1	DnaJ	central	domain
ATPase	PF06745.13	gi|257051401|ref|YP_003129234.1|	-	0.00012	21.5	0.1	0.083	12.2	0.0	2.7	3	0	0	3	3	3	1	KaiC
RsgA_GTPase	PF03193.16	gi|257051401|ref|YP_003129234.1|	-	0.00014	21.8	0.1	0.54	10.1	0.0	2.3	2	0	0	2	2	2	2	RsgA	GTPase
HypA	PF01155.19	gi|257051401|ref|YP_003129234.1|	-	0.00064	19.7	2.3	2.3	8.3	0.1	4.1	4	0	0	4	4	4	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn-ribbon_8	PF09723.10	gi|257051401|ref|YP_003129234.1|	-	0.00067	19.7	15.3	0.76	9.9	0.6	4.5	4	0	0	4	4	4	2	Zinc	ribbon	domain
AAA_33	PF13671.6	gi|257051401|ref|YP_003129234.1|	-	0.002	18.3	0.0	3.3	7.9	0.0	3.1	2	0	0	2	2	2	1	AAA	domain
AAA_18	PF13238.6	gi|257051401|ref|YP_003129234.1|	-	0.0032	18.0	0.0	2.6	8.6	0.0	2.8	2	0	0	2	2	2	1	AAA	domain
AAA_14	PF13173.6	gi|257051401|ref|YP_003129234.1|	-	0.0034	17.4	0.0	2	8.4	0.0	3.0	3	0	0	3	3	3	1	AAA	domain
cobW	PF02492.19	gi|257051401|ref|YP_003129234.1|	-	0.005	16.4	0.1	1	8.9	0.0	2.5	2	0	0	2	2	2	1	CobW/HypB/UreG,	nucleotide-binding	domain
APS_kinase	PF01583.20	gi|257051401|ref|YP_003129234.1|	-	0.009	15.9	0.1	5.7	6.8	0.0	2.6	2	0	0	2	2	2	0	Adenylylsulphate	kinase
NACHT	PF05729.12	gi|257051401|ref|YP_003129234.1|	-	0.015	15.2	0.0	1.2	9.0	0.0	2.4	2	0	0	2	2	2	0	NACHT	domain
DUF2075	PF09848.9	gi|257051401|ref|YP_003129234.1|	-	0.018	14.3	0.1	6.1	6.0	0.0	2.3	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
NMDAR2_C	PF10565.9	gi|257051401|ref|YP_003129234.1|	-	0.029	13.3	0.0	0.043	12.7	0.0	1.2	1	0	0	1	1	1	0	N-methyl	D-aspartate	receptor	2B3	C-terminus
Viral_helicase1	PF01443.18	gi|257051401|ref|YP_003129234.1|	-	0.043	13.6	0.0	1.4	8.6	0.0	2.3	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
RNA_helicase	PF00910.22	gi|257051401|ref|YP_003129234.1|	-	0.044	14.2	0.0	1.6	9.2	0.0	2.3	2	0	0	2	2	2	0	RNA	helicase
AAA_30	PF13604.6	gi|257051401|ref|YP_003129234.1|	-	0.051	13.3	0.1	4.7	6.9	0.0	2.7	3	0	0	3	3	2	0	AAA	domain
AAA_24	PF13479.6	gi|257051401|ref|YP_003129234.1|	-	0.078	12.7	0.7	13	5.4	0.0	3.7	4	0	0	4	4	4	0	AAA	domain
DZR	PF12773.7	gi|257051401|ref|YP_003129234.1|	-	0.08	13.0	9.3	4.5	7.4	0.4	4.1	4	0	0	4	4	4	0	Double	zinc	ribbon
ATPase_2	PF01637.18	gi|257051401|ref|YP_003129234.1|	-	0.11	12.3	0.0	15	5.4	0.0	2.3	2	0	0	2	2	2	0	ATPase	domain	predominantly	from	Archaea
Zn_Tnp_IS91	PF14319.6	gi|257051401|ref|YP_003129234.1|	-	0.12	12.4	4.6	1.6	8.9	0.0	3.3	4	0	0	4	4	3	0	Transposase	zinc-binding	domain
Anti-TRAP	PF15777.5	gi|257051401|ref|YP_003129234.1|	-	8.4	6.4	12.0	29	4.7	0.0	4.2	4	0	0	4	4	4	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
Bac_rhodopsin	PF01036.18	gi|257051402|ref|YP_003129235.1|	-	2.4e-62	210.4	16.2	2.7e-62	210.3	16.2	1.0	1	0	0	1	1	1	1	Bacteriorhodopsin-like	protein
DUF21	PF01595.20	gi|257051402|ref|YP_003129235.1|	-	0.0025	17.6	3.5	0.0025	17.6	3.5	1.6	2	0	0	2	2	2	1	Cyclin	M	transmembrane	N-terminal	domain
DUF4131	PF13567.6	gi|257051402|ref|YP_003129235.1|	-	0.24	11.0	8.7	2.5	7.7	3.2	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4131)
DUF4149	PF13664.6	gi|257051402|ref|YP_003129235.1|	-	7.3	7.0	11.8	4.8	7.6	1.9	2.9	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4149)
BAT	PF15915.5	gi|257051404|ref|YP_003129237.1|	-	1.6e-33	115.8	9.2	1.6e-33	115.8	9.2	3.5	4	0	0	4	4	4	1	GAF	and	HTH_10	associated	domain
PAS_9	PF13426.7	gi|257051404|ref|YP_003129237.1|	-	1.6e-22	79.7	0.1	6.7e-21	74.5	0.1	2.6	2	0	0	2	2	2	1	PAS	domain
HTH_10	PF04967.12	gi|257051404|ref|YP_003129237.1|	-	1.4e-20	72.8	0.0	3.1e-20	71.7	0.0	1.6	1	0	0	1	1	1	1	HTH	DNA	binding	domain
PAS	PF00989.25	gi|257051404|ref|YP_003129237.1|	-	3.6e-11	43.1	0.1	4.8e-09	36.2	0.0	2.6	2	0	0	2	2	2	1	PAS	fold
PAS_4	PF08448.10	gi|257051404|ref|YP_003129237.1|	-	5.3e-10	39.5	4.5	1.8e-09	37.8	0.0	3.4	4	0	0	4	4	3	1	PAS	fold
Response_reg	PF00072.24	gi|257051404|ref|YP_003129237.1|	-	2.4e-09	37.4	0.0	7.7e-09	35.7	0.0	1.9	1	0	0	1	1	1	1	Response	regulator	receiver	domain
GAF_2	PF13185.6	gi|257051404|ref|YP_003129237.1|	-	2.1e-08	34.6	2.0	3.9e-08	33.7	0.2	2.5	3	0	0	3	3	2	1	GAF	domain
PAS_3	PF08447.12	gi|257051404|ref|YP_003129237.1|	-	2.6e-08	34.0	0.0	7.1e-08	32.6	0.0	1.8	1	0	0	1	1	1	1	PAS	fold
GAF_3	PF13492.6	gi|257051404|ref|YP_003129237.1|	-	2.5e-07	31.1	0.0	8.5e-07	29.4	0.0	2.0	1	0	0	1	1	1	1	GAF	domain
PAS_8	PF13188.7	gi|257051404|ref|YP_003129237.1|	-	8.2e-05	22.5	0.0	0.00027	20.9	0.0	1.9	1	0	0	1	1	1	1	PAS	domain
GAF	PF01590.26	gi|257051404|ref|YP_003129237.1|	-	0.00062	20.4	0.0	0.0018	18.9	0.0	1.9	1	0	0	1	1	1	1	GAF	domain
AfsA	PF03756.13	gi|257051404|ref|YP_003129237.1|	-	0.018	15.0	0.4	0.077	13.0	0.0	2.3	2	0	0	2	2	2	0	A-factor	biosynthesis	hotdog	domain
OsmC	PF02566.19	gi|257051404|ref|YP_003129237.1|	-	0.036	14.5	0.6	0.31	11.5	0.1	2.7	2	0	0	2	2	2	0	OsmC-like	protein
DUF1492	PF07374.11	gi|257051404|ref|YP_003129237.1|	-	0.14	12.3	0.1	9.8	6.4	0.0	2.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1492)
Amino_oxidase	PF01593.24	gi|257051405|ref|YP_003129238.1|	-	2.5e-30	106.2	0.0	3.7e-30	105.6	0.0	1.3	1	0	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.6	gi|257051405|ref|YP_003129238.1|	-	1.8e-17	63.3	0.7	7.3e-17	61.4	0.0	2.4	3	0	0	3	3	3	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|257051405|ref|YP_003129238.1|	-	3.6e-16	59.7	1.4	3.6e-07	30.1	1.6	2.5	2	1	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|257051405|ref|YP_003129238.1|	-	7.4e-07	28.6	1.9	2.3e-06	27.0	1.9	1.7	1	0	0	1	1	1	1	FAD	binding	domain
FAD_oxidored	PF12831.7	gi|257051405|ref|YP_003129238.1|	-	1.2e-05	24.8	0.0	2e-05	24.1	0.0	1.4	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.14	gi|257051405|ref|YP_003129238.1|	-	6.8e-05	22.2	2.1	0.00015	21.1	0.3	2.2	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|257051405|ref|YP_003129238.1|	-	0.0001	22.8	1.9	0.00023	21.7	0.2	2.5	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.19	gi|257051405|ref|YP_003129238.1|	-	0.00024	20.5	0.4	0.0004	19.7	0.4	1.3	1	0	0	1	1	1	1	FAD	binding	domain
MCRA	PF06100.11	gi|257051405|ref|YP_003129238.1|	-	0.00033	19.6	0.0	0.0018	17.2	0.0	1.8	2	0	0	2	2	2	1	MCRA	family
HI0933_like	PF03486.14	gi|257051405|ref|YP_003129238.1|	-	0.00041	19.2	0.6	0.011	14.4	1.2	2.1	2	0	0	2	2	2	1	HI0933-like	protein
AlaDh_PNT_C	PF01262.21	gi|257051405|ref|YP_003129238.1|	-	0.0022	17.3	2.4	0.0032	16.8	2.4	1.2	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
GIDA	PF01134.22	gi|257051405|ref|YP_003129238.1|	-	0.012	14.7	1.0	0.019	14.1	1.0	1.2	1	0	0	1	1	1	0	Glucose	inhibited	division	protein	A
Thi4	PF01946.17	gi|257051405|ref|YP_003129238.1|	-	0.034	13.4	0.7	0.064	12.5	0.7	1.3	1	0	0	1	1	1	0	Thi4	family
NAD_binding_7	PF13241.6	gi|257051405|ref|YP_003129238.1|	-	0.039	14.4	0.0	0.076	13.5	0.0	1.5	1	0	0	1	1	1	0	Putative	NAD(P)-binding
Pyr_redox_3	PF13738.6	gi|257051405|ref|YP_003129238.1|	-	0.11	11.8	1.7	0.34	10.1	0.8	1.9	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
BCD	PF15461.6	gi|257051406|ref|YP_003129239.1|	-	3.8e-73	246.3	16.8	5.3e-73	245.8	16.8	1.2	1	0	0	1	1	1	1	Beta-carotene	15,15'-dioxygenase
zf-HYPF	PF07503.12	gi|257051407|ref|YP_003129240.1|	-	0.017	14.9	1.0	1.9	8.3	0.1	2.2	2	0	0	2	2	2	0	HypF	finger
zinc_ribbon_5	PF13719.6	gi|257051407|ref|YP_003129240.1|	-	0.3	10.9	0.1	0.3	10.9	0.1	2.3	2	1	1	3	3	3	0	zinc-ribbon	domain
adh_short_C2	PF13561.6	gi|257051408|ref|YP_003129241.1|	-	7.6e-49	166.4	0.0	2e-48	165.0	0.0	1.6	1	1	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|257051408|ref|YP_003129241.1|	-	1.1e-43	149.0	0.0	1.3e-43	148.8	0.0	1.0	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|257051408|ref|YP_003129241.1|	-	5.4e-09	36.2	0.0	7.5e-09	35.7	0.0	1.2	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|257051408|ref|YP_003129241.1|	-	0.01	15.3	0.1	0.017	14.6	0.1	1.6	1	1	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
Enoyl_reductase	PF12241.8	gi|257051408|ref|YP_003129241.1|	-	0.022	14.1	0.0	0.031	13.6	0.0	1.1	1	0	0	1	1	1	0	Trans-2-enoyl-CoA	reductase	catalytic	region
NmrA	PF05368.13	gi|257051408|ref|YP_003129241.1|	-	0.11	12.0	0.4	0.16	11.5	0.4	1.2	1	0	0	1	1	1	0	NmrA-like	family
AIM24	PF01987.17	gi|257051409|ref|YP_003129242.1|	-	3.9e-62	209.6	0.0	4.4e-62	209.5	0.0	1.0	1	0	0	1	1	1	1	Mitochondrial	biogenesis	AIM24
FG-GAP_2	PF14312.6	gi|257051410|ref|YP_003129243.1|	-	1.2e-29	102.3	15.4	3.5e-07	30.4	0.0	7.5	8	0	0	8	8	8	6	FG-GAP	repeat
DUF402	PF04167.13	gi|257051411|ref|YP_003129244.1|	-	1e-15	57.6	3.1	2.6e-15	56.3	3.1	1.8	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF402)
S1	PF00575.23	gi|257051411|ref|YP_003129244.1|	-	0.0006	20.1	0.0	0.0019	18.5	0.0	1.9	1	0	0	1	1	1	1	S1	RNA	binding	domain
Sec61_beta	PF03911.16	gi|257051412|ref|YP_003129245.1|	-	1.6e-17	63.3	0.1	2e-17	62.9	0.1	1.2	1	0	0	1	1	1	1	Sec61beta	family
Thioredoxin	PF00085.20	gi|257051413|ref|YP_003129246.1|	-	4e-18	65.3	0.0	4.3e-18	65.2	0.0	1.0	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_8	PF13905.6	gi|257051413|ref|YP_003129246.1|	-	5.4e-08	33.1	0.0	0.0035	17.6	0.0	2.1	1	1	1	2	2	2	2	Thioredoxin-like
Thioredoxin_2	PF13098.6	gi|257051413|ref|YP_003129246.1|	-	7.9e-07	29.5	0.2	3.3e-05	24.3	0.2	2.0	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_9	PF14595.6	gi|257051413|ref|YP_003129246.1|	-	1.3e-05	24.9	0.1	1.4e-05	24.8	0.1	1.1	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_3	PF13192.6	gi|257051413|ref|YP_003129246.1|	-	0.00035	20.6	0.0	0.00039	20.4	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin	domain
Glutaredoxin	PF00462.24	gi|257051413|ref|YP_003129246.1|	-	0.0021	18.3	0.0	0.0033	17.6	0.0	1.3	1	0	0	1	1	1	1	Glutaredoxin
AhpC-TSA	PF00578.21	gi|257051413|ref|YP_003129246.1|	-	0.0061	16.5	0.1	0.046	13.6	0.1	1.9	1	1	0	1	1	1	1	AhpC/TSA	family
DUF836	PF05768.14	gi|257051413|ref|YP_003129246.1|	-	0.0064	16.9	0.0	0.0069	16.8	0.0	1.1	1	0	0	1	1	1	1	Glutaredoxin-like	domain	(DUF836)
TraF	PF13728.6	gi|257051413|ref|YP_003129246.1|	-	0.018	14.9	0.0	0.022	14.6	0.0	1.1	1	0	0	1	1	1	0	F	plasmid	transfer	operon	protein
Thioredoxin_7	PF13899.6	gi|257051413|ref|YP_003129246.1|	-	0.031	14.5	1.2	0.05	13.8	0.2	2.1	2	1	0	2	2	2	0	Thioredoxin-like
Thioredoxin_5	PF13743.6	gi|257051413|ref|YP_003129246.1|	-	0.12	12.0	0.0	0.16	11.6	0.0	1.3	1	1	0	1	1	1	0	Thioredoxin
Redoxin	PF08534.10	gi|257051413|ref|YP_003129246.1|	-	0.19	11.4	0.2	2.2	8.0	0.0	1.9	1	1	1	2	2	2	0	Redoxin
F420_oxidored	PF03807.17	gi|257051414|ref|YP_003129247.1|	-	8.6e-20	71.1	0.7	1.3e-19	70.5	0.2	1.6	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_Gly3P_dh_N	PF01210.23	gi|257051414|ref|YP_003129247.1|	-	7.4e-06	26.0	0.0	9.7e-06	25.6	0.0	1.2	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
ApbA	PF02558.16	gi|257051414|ref|YP_003129247.1|	-	1.1e-05	25.2	0.0	1.4e-05	24.8	0.0	1.2	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
Sacchrp_dh_NADP	PF03435.18	gi|257051414|ref|YP_003129247.1|	-	0.00011	22.5	0.1	0.0002	21.6	0.1	1.4	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
Semialdhyde_dh	PF01118.24	gi|257051414|ref|YP_003129247.1|	-	0.00013	22.4	0.3	0.00023	21.6	0.1	1.5	2	0	0	2	2	2	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
KR	PF08659.10	gi|257051414|ref|YP_003129247.1|	-	0.0011	18.9	0.2	0.0019	18.2	0.2	1.3	1	0	0	1	1	1	1	KR	domain
NAD_binding_2	PF03446.15	gi|257051414|ref|YP_003129247.1|	-	0.0065	16.7	0.0	0.012	15.8	0.0	1.4	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NmrA	PF05368.13	gi|257051414|ref|YP_003129247.1|	-	0.0089	15.6	0.1	0.014	15.0	0.1	1.2	1	0	0	1	1	1	1	NmrA-like	family
Shikimate_DH	PF01488.20	gi|257051414|ref|YP_003129247.1|	-	0.0097	16.0	0.0	0.017	15.2	0.0	1.4	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
GFO_IDH_MocA	PF01408.22	gi|257051414|ref|YP_003129247.1|	-	0.019	15.8	0.4	0.05	14.4	0.1	1.7	2	0	0	2	2	2	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
NAD_binding_10	PF13460.6	gi|257051414|ref|YP_003129247.1|	-	0.036	13.9	2.5	0.06	13.2	2.5	1.5	1	1	0	1	1	1	0	NAD(P)H-binding
3HCDH_N	PF02737.18	gi|257051414|ref|YP_003129247.1|	-	0.049	13.5	0.4	0.12	12.3	0.4	1.7	1	1	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Ldh_1_N	PF00056.23	gi|257051414|ref|YP_003129247.1|	-	0.083	13.0	0.0	0.15	12.2	0.0	1.4	1	0	0	1	1	1	0	lactate/malate	dehydrogenase,	NAD	binding	domain
Hydrolase	PF00702.26	gi|257051415|ref|YP_003129248.1|	-	4.2e-08	33.7	2.5	1.7e-07	31.7	2.5	1.9	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD_2	PF13419.6	gi|257051415|ref|YP_003129248.1|	-	7.9e-08	32.6	0.0	5.9e-06	26.5	0.0	2.5	2	1	0	2	2	2	1	Haloacid	dehalogenase-like	hydrolase
Pribosyl_synth	PF14572.6	gi|257051415|ref|YP_003129248.1|	-	0.016	15.2	0.1	0.34	10.9	0.0	2.1	2	0	0	2	2	2	0	Phosphoribosyl	synthetase-associated	domain
Flagellin_IN	PF07196.13	gi|257051415|ref|YP_003129248.1|	-	0.068	13.4	0.7	0.26	11.5	0.5	2.0	2	0	0	2	2	2	0	Flagellin	hook	IN	motif
Peptidase_M54	PF07998.11	gi|257051416|ref|YP_003129249.1|	-	1.2e-24	87.4	0.1	1.5e-24	87.1	0.1	1.1	1	0	0	1	1	1	1	Peptidase	family	M54
Peptidase_M10	PF00413.24	gi|257051416|ref|YP_003129249.1|	-	3.1e-05	23.9	0.0	3.1e-05	23.9	0.0	1.2	1	0	0	1	1	1	1	Matrixin
DUF4953	PF16313.5	gi|257051416|ref|YP_003129249.1|	-	9.1e-05	21.8	0.1	0.00013	21.3	0.1	1.2	1	0	0	1	1	1	1	Met-zincin
Reprolysin_3	PF13582.6	gi|257051416|ref|YP_003129249.1|	-	0.0001	22.8	0.0	0.00013	22.5	0.0	1.3	1	0	0	1	1	1	1	Metallo-peptidase	family	M12B	Reprolysin-like
Reprolysin_4	PF13583.6	gi|257051416|ref|YP_003129249.1|	-	0.00024	20.8	0.0	0.00028	20.6	0.0	1.1	1	0	0	1	1	1	1	Metallo-peptidase	family	M12B	Reprolysin-like
Reprolysin_2	PF13574.6	gi|257051416|ref|YP_003129249.1|	-	0.00043	20.2	0.0	0.00045	20.2	0.0	1.1	1	0	0	1	1	1	1	Metallo-peptidase	family	M12B	Reprolysin-like
Reprolysin_5	PF13688.6	gi|257051416|ref|YP_003129249.1|	-	0.0019	18.4	0.0	0.002	18.3	0.0	1.1	1	0	0	1	1	1	1	Metallo-peptidase	family	M12
Zincin_1	PF06262.11	gi|257051416|ref|YP_003129249.1|	-	0.013	15.6	0.1	0.024	14.7	0.1	1.3	1	0	0	1	1	1	0	Zincin-like	metallopeptidase
Peptidase_M66	PF10462.9	gi|257051416|ref|YP_003129249.1|	-	0.018	14.0	0.1	0.022	13.7	0.1	1.1	1	0	0	1	1	1	0	Peptidase	M66
Metallopep	PF12044.8	gi|257051416|ref|YP_003129249.1|	-	0.036	12.7	0.1	0.048	12.3	0.1	1.1	1	0	0	1	1	1	0	Putative	peptidase	family
Reprolysin	PF01421.19	gi|257051416|ref|YP_003129249.1|	-	0.044	13.7	0.0	0.058	13.3	0.0	1.1	1	0	0	1	1	1	0	Reprolysin	(M12B)	family	zinc	metalloprotease
Peptidase_M43	PF05572.13	gi|257051416|ref|YP_003129249.1|	-	0.046	13.6	0.1	0.079	12.9	0.1	1.4	1	1	0	1	1	1	0	Pregnancy-associated	plasma	protein-A
Peptidase_M57	PF12388.8	gi|257051416|ref|YP_003129249.1|	-	0.046	13.3	0.1	0.099	12.2	0.1	1.5	2	0	0	2	2	2	0	Dual-action	HEIGH	metallo-peptidase
Response_reg	PF00072.24	gi|257051417|ref|YP_003129250.1|	-	8.2e-22	77.5	0.0	2.2e-21	76.1	0.0	1.8	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HATPase_c	PF02518.26	gi|257051417|ref|YP_003129250.1|	-	6e-19	68.6	0.0	1.5e-18	67.3	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_4	PF08448.10	gi|257051417|ref|YP_003129250.1|	-	3.5e-14	53.0	3.6	2.7e-13	50.1	0.4	3.2	2	1	0	2	2	2	1	PAS	fold
GAF_2	PF13185.6	gi|257051417|ref|YP_003129250.1|	-	3.7e-09	37.0	1.4	9.3e-09	35.7	0.1	2.4	3	0	0	3	3	3	1	GAF	domain
PAS_8	PF13188.7	gi|257051417|ref|YP_003129250.1|	-	5e-09	36.0	0.1	0.0005	20.0	0.0	3.0	2	0	0	2	2	2	2	PAS	domain
HisKA	PF00512.25	gi|257051417|ref|YP_003129250.1|	-	2.5e-07	30.6	4.9	6.9e-07	29.2	0.5	3.6	3	0	0	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_9	PF13426.7	gi|257051417|ref|YP_003129250.1|	-	0.0011	19.1	0.0	0.067	13.4	0.0	3.0	3	0	0	3	3	3	1	PAS	domain
PAS	PF00989.25	gi|257051417|ref|YP_003129250.1|	-	0.0038	17.2	0.0	0.18	11.8	0.0	2.7	2	0	0	2	2	2	1	PAS	fold
HATPase_c_2	PF13581.6	gi|257051417|ref|YP_003129250.1|	-	0.0063	16.5	0.1	0.02	14.9	0.1	1.8	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
Lactate_perm	PF02652.14	gi|257051418|ref|YP_003129251.1|	-	7.4e-96	321.9	29.1	2.7e-95	320.1	29.1	1.7	1	1	0	1	1	1	1	L-lactate	permease
PHP	PF02811.19	gi|257051419|ref|YP_003129252.1|	-	4.2e-06	27.2	0.2	8e-06	26.3	0.1	1.4	1	1	0	1	1	1	1	PHP	domain
ABC_tran	PF00005.27	gi|257051420|ref|YP_003129253.1|	-	2.2e-36	125.4	0.0	5.6e-19	69.0	0.0	2.8	2	1	0	2	2	2	2	ABC	transporter
SMC_N	PF02463.19	gi|257051420|ref|YP_003129253.1|	-	2.9e-13	49.8	2.4	0.0012	18.4	0.0	4.2	4	0	0	4	4	4	2	RecF/RecN/SMC	N	terminal	domain
RLI	PF04068.15	gi|257051420|ref|YP_003129253.1|	-	5.1e-12	45.4	0.6	1.1e-11	44.4	0.6	1.5	1	0	0	1	1	1	1	Possible	Fer4-like	domain	in	RNase	L	inhibitor,	RLI
AAA_21	PF13304.6	gi|257051420|ref|YP_003129253.1|	-	1.8e-11	44.5	0.2	0.2	11.4	0.0	4.2	4	0	0	4	4	4	4	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_16	PF13191.6	gi|257051420|ref|YP_003129253.1|	-	7.7e-08	32.9	0.2	0.0038	17.6	0.0	2.7	2	1	0	2	2	2	2	AAA	ATPase	domain
AAA_22	PF13401.6	gi|257051420|ref|YP_003129253.1|	-	1.1e-06	29.0	0.0	0.00055	20.2	0.0	2.6	2	0	0	2	2	2	1	AAA	domain
AAA	PF00004.29	gi|257051420|ref|YP_003129253.1|	-	5.1e-06	26.9	0.0	0.21	12.0	0.0	2.7	3	0	0	3	3	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
RNA_helicase	PF00910.22	gi|257051420|ref|YP_003129253.1|	-	7e-06	26.4	0.0	0.091	13.2	0.0	2.6	2	0	0	2	2	2	2	RNA	helicase
Rad17	PF03215.15	gi|257051420|ref|YP_003129253.1|	-	7.4e-06	26.0	0.0	0.15	11.9	0.0	3.1	2	1	1	3	3	3	2	Rad17	P-loop	domain
RuvB_N	PF05496.12	gi|257051420|ref|YP_003129253.1|	-	3.4e-05	23.6	0.0	0.27	11.0	0.0	2.8	3	0	0	3	3	3	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_23	PF13476.6	gi|257051420|ref|YP_003129253.1|	-	9.5e-05	23.0	0.0	0.25	11.8	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
AAA_18	PF13238.6	gi|257051420|ref|YP_003129253.1|	-	0.00014	22.4	0.0	0.54	10.8	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
NACHT	PF05729.12	gi|257051420|ref|YP_003129253.1|	-	0.00015	21.8	0.0	0.59	10.0	0.0	2.5	2	0	0	2	2	2	2	NACHT	domain
AAA_33	PF13671.6	gi|257051420|ref|YP_003129253.1|	-	0.00016	21.9	0.0	0.1	12.7	0.0	2.9	2	1	0	2	2	2	1	AAA	domain
AAA_24	PF13479.6	gi|257051420|ref|YP_003129253.1|	-	0.00023	21.0	0.0	0.16	11.7	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
Fer4	PF00037.27	gi|257051420|ref|YP_003129253.1|	-	0.00058	19.6	1.3	0.00058	19.6	1.3	2.7	3	0	0	3	3	3	1	4Fe-4S	binding	domain
RsgA_GTPase	PF03193.16	gi|257051420|ref|YP_003129253.1|	-	0.0025	17.7	0.1	0.97	9.3	0.0	2.3	2	0	0	2	2	2	1	RsgA	GTPase
AAA_14	PF13173.6	gi|257051420|ref|YP_003129253.1|	-	0.0026	17.8	0.0	4.8	7.2	0.0	2.9	3	0	0	3	3	3	0	AAA	domain
Fer4_6	PF12837.7	gi|257051420|ref|YP_003129253.1|	-	0.0038	17.2	11.8	0.015	15.4	1.7	2.4	2	0	0	2	2	2	1	4Fe-4S	binding	domain
AAA_15	PF13175.6	gi|257051420|ref|YP_003129253.1|	-	0.005	16.6	0.0	1.3	8.6	0.0	2.5	3	0	0	3	3	2	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|257051420|ref|YP_003129253.1|	-	0.005	16.5	0.4	3.6	7.4	0.0	2.5	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
AAA_5	PF07728.14	gi|257051420|ref|YP_003129253.1|	-	0.0064	16.5	0.0	1	9.3	0.0	3.0	3	0	0	3	3	3	1	AAA	domain	(dynein-related	subfamily)
NTPase_1	PF03266.15	gi|257051420|ref|YP_003129253.1|	-	0.007	16.3	0.6	4	7.3	0.1	2.8	3	0	0	3	3	2	1	NTPase
SRP54	PF00448.22	gi|257051420|ref|YP_003129253.1|	-	0.0083	15.8	0.0	2.7	7.6	0.1	2.3	2	0	0	2	2	2	1	SRP54-type	protein,	GTPase	domain
AAA_28	PF13521.6	gi|257051420|ref|YP_003129253.1|	-	0.012	15.9	0.2	6	7.1	0.0	3.1	3	0	0	3	3	2	0	AAA	domain
Fer4_2	PF12797.7	gi|257051420|ref|YP_003129253.1|	-	0.015	15.4	1.1	0.015	15.4	1.1	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Thymidylate_kin	PF02223.17	gi|257051420|ref|YP_003129253.1|	-	0.018	14.7	0.0	2.8	7.6	0.0	2.4	2	0	0	2	2	2	0	Thymidylate	kinase
SbcCD_C	PF13558.6	gi|257051420|ref|YP_003129253.1|	-	0.02	15.1	0.0	7.4	6.9	0.0	2.9	2	1	0	2	2	2	0	Putative	exonuclease	SbcCD,	C	subunit
DUF87	PF01935.17	gi|257051420|ref|YP_003129253.1|	-	0.023	14.8	0.0	6	6.9	0.0	2.5	2	0	0	2	2	2	0	Helicase	HerA,	central	domain
NB-ARC	PF00931.22	gi|257051420|ref|YP_003129253.1|	-	0.052	12.7	0.0	1.1	8.4	0.0	2.3	2	0	0	2	2	2	0	NB-ARC	domain
Fer4_10	PF13237.6	gi|257051420|ref|YP_003129253.1|	-	0.064	13.4	11.2	0.64	10.2	1.2	2.3	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Cytidylate_kin	PF02224.18	gi|257051420|ref|YP_003129253.1|	-	0.064	13.0	0.1	1.9	8.2	0.0	2.4	2	0	0	2	2	2	0	Cytidylate	kinase
MeaB	PF03308.16	gi|257051420|ref|YP_003129253.1|	-	0.083	11.9	0.2	6.6	5.6	0.0	2.2	2	0	0	2	2	2	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_30	PF13604.6	gi|257051420|ref|YP_003129253.1|	-	0.1	12.3	0.0	10	5.8	0.0	2.6	2	0	0	2	2	2	0	AAA	domain
dNK	PF01712.19	gi|257051420|ref|YP_003129253.1|	-	0.12	12.2	0.0	10	5.9	0.0	2.4	2	0	0	2	2	2	0	Deoxynucleoside	kinase
SKI	PF01202.22	gi|257051420|ref|YP_003129253.1|	-	0.13	12.3	0.0	7.1	6.7	0.0	2.8	2	0	0	2	2	2	0	Shikimate	kinase
Fer4_9	PF13187.6	gi|257051420|ref|YP_003129253.1|	-	0.15	12.3	8.7	0.32	11.2	8.8	1.6	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
CLP1_P	PF16575.5	gi|257051420|ref|YP_003129253.1|	-	0.16	11.8	0.0	3.9	7.2	0.0	2.5	2	0	0	2	2	2	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
AAA_25	PF13481.6	gi|257051420|ref|YP_003129253.1|	-	0.26	10.8	5.0	11	5.6	0.0	3.6	4	0	0	4	4	4	0	AAA	domain
Fer4_7	PF12838.7	gi|257051420|ref|YP_003129253.1|	-	0.3	11.7	9.3	0.65	10.6	9.3	1.6	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|257051420|ref|YP_003129253.1|	-	1.5	9.0	7.8	3.1	8.0	7.8	1.5	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|257051420|ref|YP_003129253.1|	-	5.8	7.9	10.0	17	6.5	9.9	1.8	1	1	0	1	1	1	0	4Fe-4S	double	cluster	binding	domain
HTH_24	PF13412.6	gi|257051422|ref|YP_003129255.1|	-	0.0065	16.0	0.0	0.01	15.4	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.19	gi|257051422|ref|YP_003129255.1|	-	0.014	15.3	0.1	0.017	15.0	0.1	1.2	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|257051422|ref|YP_003129255.1|	-	0.032	14.1	0.0	0.041	13.8	0.0	1.3	1	1	0	1	1	1	0	MarR	family
HTH_27	PF13463.6	gi|257051422|ref|YP_003129255.1|	-	0.037	14.5	0.0	0.048	14.2	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
MarR	PF01047.22	gi|257051422|ref|YP_003129255.1|	-	0.05	13.5	0.0	0.07	13.1	0.0	1.2	1	0	0	1	1	1	0	MarR	family
GntR	PF00392.21	gi|257051422|ref|YP_003129255.1|	-	0.079	12.6	0.1	0.11	12.1	0.1	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_11	PF08279.12	gi|257051422|ref|YP_003129255.1|	-	0.11	12.4	0.0	0.16	12.0	0.0	1.2	1	0	0	1	1	1	0	HTH	domain
Abhydrolase_2	PF02230.16	gi|257051423|ref|YP_003129256.1|	-	1.1e-18	67.9	0.0	1e-17	64.7	0.0	1.9	1	1	0	1	1	1	1	Phospholipase/Carboxylesterase
DLH	PF01738.18	gi|257051423|ref|YP_003129256.1|	-	2e-05	24.3	0.0	2.6e-05	23.9	0.0	1.1	1	0	0	1	1	1	1	Dienelactone	hydrolase	family
Hydrolase_4	PF12146.8	gi|257051423|ref|YP_003129256.1|	-	0.00012	21.4	0.1	0.097	11.9	0.0	2.9	2	1	1	3	3	3	2	Serine	aminopeptidase,	S33
FSH1	PF03959.13	gi|257051423|ref|YP_003129256.1|	-	0.0016	18.1	0.0	0.0017	18.1	0.0	1.2	1	0	0	1	1	1	1	Serine	hydrolase	(FSH1)
Abhydrolase_1	PF00561.20	gi|257051423|ref|YP_003129256.1|	-	0.0059	16.3	0.0	0.0069	16.1	0.0	1.3	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
Esterase_phd	PF10503.9	gi|257051423|ref|YP_003129256.1|	-	0.021	14.3	0.1	0.04	13.4	0.1	1.5	1	1	0	1	1	1	0	Esterase	PHB	depolymerase
Esterase	PF00756.20	gi|257051423|ref|YP_003129256.1|	-	0.039	13.6	0.0	0.055	13.1	0.0	1.2	1	0	0	1	1	1	0	Putative	esterase
PE-PPE	PF08237.11	gi|257051423|ref|YP_003129256.1|	-	0.09	12.3	0.0	0.13	11.8	0.0	1.2	1	0	0	1	1	1	0	PE-PPE	domain
PTPS	PF01242.19	gi|257051424|ref|YP_003129257.1|	-	0.055	13.4	0.0	0.11	12.5	0.0	1.4	1	1	0	1	1	1	0	6-pyruvoyl	tetrahydropterin	synthase
NAD_binding_2	PF03446.15	gi|257051425|ref|YP_003129258.1|	-	1e-44	152.5	0.6	1.5e-44	151.9	0.6	1.2	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NAD_binding_11	PF14833.6	gi|257051425|ref|YP_003129258.1|	-	1.3e-26	93.2	0.1	2.5e-26	92.3	0.1	1.5	1	0	0	1	1	1	1	NAD-binding	of	NADP-dependent	3-hydroxyisobutyrate	dehydrogenase
F420_oxidored	PF03807.17	gi|257051425|ref|YP_003129258.1|	-	5.3e-08	33.3	0.0	1.4e-07	32.0	0.0	1.8	1	1	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
2-Hacid_dh_C	PF02826.19	gi|257051425|ref|YP_003129258.1|	-	1.7e-06	27.5	0.0	2.4e-06	27.0	0.0	1.2	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Sacchrp_dh_NADP	PF03435.18	gi|257051425|ref|YP_003129258.1|	-	0.0001	22.6	0.0	0.0051	17.1	0.0	2.2	1	1	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
IlvN	PF07991.12	gi|257051425|ref|YP_003129258.1|	-	0.00037	20.1	0.0	0.00069	19.2	0.0	1.3	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
ApbA	PF02558.16	gi|257051425|ref|YP_003129258.1|	-	0.00061	19.5	0.0	0.0011	18.7	0.0	1.4	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
Shikimate_DH	PF01488.20	gi|257051425|ref|YP_003129258.1|	-	0.002	18.2	0.0	0.0043	17.1	0.0	1.5	1	1	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
3HCDH_N	PF02737.18	gi|257051425|ref|YP_003129258.1|	-	0.0056	16.6	0.1	0.016	15.1	0.0	1.7	1	1	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
DUF790	PF05626.11	gi|257051426|ref|YP_003129259.1|	-	2.6e-138	461.0	0.0	3.4e-138	460.6	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF790)
Methyltranf_PUA	PF13636.6	gi|257051427|ref|YP_003129260.1|	-	3e-12	46.3	0.0	5.2e-12	45.6	0.0	1.4	1	0	0	1	1	1	1	RNA-binding	PUA-like	domain	of	methyltransferase	RsmF
Methyltr_RsmB-F	PF01189.17	gi|257051428|ref|YP_003129261.1|	-	3.8e-51	173.6	0.0	4.7e-51	173.3	0.0	1.1	1	0	0	1	1	1	1	16S	rRNA	methyltransferase	RsmB/F
Methyltr_RsmF_N	PF17125.5	gi|257051428|ref|YP_003129261.1|	-	8.6e-07	29.4	0.0	2.9e-06	27.7	0.0	1.8	2	0	0	2	2	2	1	N-terminal	domain	of	16S	rRNA	methyltransferase	RsmF
Methyltransf_31	PF13847.6	gi|257051428|ref|YP_003129261.1|	-	2e-06	27.6	0.0	3.6e-06	26.8	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
FtsJ	PF01728.19	gi|257051428|ref|YP_003129261.1|	-	0.00023	21.3	0.0	0.00042	20.5	0.0	1.4	1	1	0	1	1	1	1	FtsJ-like	methyltransferase
Methyltransf_25	PF13649.6	gi|257051428|ref|YP_003129261.1|	-	0.0019	18.8	0.1	0.033	14.9	0.1	2.6	2	1	0	2	2	2	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|257051428|ref|YP_003129261.1|	-	0.0071	17.0	0.0	1.5	9.5	0.0	3.0	2	1	0	2	2	2	1	Methyltransferase	domain
PAC2	PF09754.9	gi|257051429|ref|YP_003129262.1|	-	3.2e-36	125.3	0.1	3.8e-36	125.1	0.1	1.0	1	0	0	1	1	1	1	PAC2	family
kleA_kleC	PF17383.2	gi|257051429|ref|YP_003129262.1|	-	0.055	13.8	0.7	0.11	12.9	0.7	1.4	1	0	0	1	1	1	0	Uncharacterized	KorC	regulated	protein	A
LysE	PF01810.18	gi|257051430|ref|YP_003129263.1|	-	4.6e-21	75.2	8.7	2.5e-20	72.8	0.6	2.1	1	1	1	2	2	2	2	LysE	type	translocator
HD	PF01966.22	gi|257051431|ref|YP_003129264.1|	-	1.1e-15	57.9	1.2	1.9e-15	57.1	1.2	1.4	1	0	0	1	1	1	1	HD	domain
Acetyltransf_1	PF00583.25	gi|257051432|ref|YP_003129265.1|	-	8.1e-11	42.2	0.0	1.4e-10	41.4	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|257051432|ref|YP_003129265.1|	-	7e-09	35.7	0.0	2.1e-08	34.2	0.0	1.7	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|257051432|ref|YP_003129265.1|	-	3e-07	30.7	0.0	7.7e-07	29.5	0.0	1.7	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|257051432|ref|YP_003129265.1|	-	4.4e-05	23.6	0.0	0.00012	22.2	0.0	1.8	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|257051432|ref|YP_003129265.1|	-	0.0067	16.4	0.0	0.014	15.3	0.0	1.5	1	0	0	1	1	1	1	FR47-like	protein
Zn-ribbon_8	PF09723.10	gi|257051432|ref|YP_003129265.1|	-	0.0078	16.3	1.4	0.014	15.5	1.4	1.4	1	0	0	1	1	1	1	Zinc	ribbon	domain
Acetyltransf_4	PF13420.7	gi|257051432|ref|YP_003129265.1|	-	0.01	16.0	0.0	0.024	14.8	0.0	1.6	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|257051432|ref|YP_003129265.1|	-	0.021	15.0	0.0	0.041	14.0	0.0	1.5	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
DZR	PF12773.7	gi|257051432|ref|YP_003129265.1|	-	0.065	13.3	0.4	0.11	12.6	0.4	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-ribbon_3	PF13248.6	gi|257051432|ref|YP_003129265.1|	-	0.12	11.8	1.7	6.3	6.4	0.1	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
Bactofilin	PF04519.13	gi|257051433|ref|YP_003129266.1|	-	3.6e-15	56.1	18.0	3.3e-12	46.5	9.1	2.2	1	1	1	2	2	2	2	Polymer-forming	cytoskeletal
FapA	PF03961.13	gi|257051433|ref|YP_003129266.1|	-	0.065	11.8	8.6	0.11	11.0	8.6	1.4	1	0	0	1	1	1	0	Flagellar	Assembly	Protein	A
Phage_spike	PF18715.1	gi|257051433|ref|YP_003129266.1|	-	0.073	13.1	12.4	5.8	7.1	3.5	4.2	1	1	1	2	2	2	0	Phage	spike	trimer
FA_desaturase	PF00487.24	gi|257051433|ref|YP_003129266.1|	-	0.8	9.5	3.1	1.5	8.6	3.1	1.5	1	0	0	1	1	1	0	Fatty	acid	desaturase
GFO_IDH_MocA	PF01408.22	gi|257051434|ref|YP_003129267.1|	-	5.1e-19	69.3	0.0	1.1e-18	68.2	0.0	1.6	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
GFO_IDH_MocA_C	PF02894.17	gi|257051434|ref|YP_003129267.1|	-	0.0063	16.5	0.0	0.015	15.3	0.0	1.7	2	0	0	2	2	2	1	Oxidoreductase	family,	C-terminal	alpha/beta	domain
DNA_RNApol_7kD	PF03604.13	gi|257051435|ref|YP_003129268.1|	-	0.018	14.7	1.1	5.8	6.7	0.1	2.3	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
DUF3268	PF11672.8	gi|257051435|ref|YP_003129268.1|	-	0.022	15.1	0.1	0.025	14.9	0.1	1.3	1	1	0	1	1	1	0	zinc-finger-containing	domain
C1_4	PF07975.12	gi|257051435|ref|YP_003129268.1|	-	0.027	14.7	0.6	2.1	8.6	0.0	2.3	1	1	1	2	2	2	0	TFIIH	C1-like	domain
CpXC	PF14353.6	gi|257051435|ref|YP_003129268.1|	-	0.14	12.2	0.1	14	5.8	0.1	2.1	1	1	1	2	2	2	0	CpXC	protein
A2L_zn_ribbon	PF08792.10	gi|257051435|ref|YP_003129268.1|	-	0.24	11.1	1.8	5.4	6.9	0.2	2.3	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
zf-NADH-PPase	PF09297.11	gi|257051435|ref|YP_003129268.1|	-	1.4	8.7	5.1	8.1	6.2	0.3	2.5	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
DJ-1_PfpI	PF01965.24	gi|257051436|ref|YP_003129269.1|	-	4.5e-51	172.9	0.0	5.3e-51	172.7	0.0	1.0	1	0	0	1	1	1	1	DJ-1/PfpI	family
GATase	PF00117.28	gi|257051436|ref|YP_003129269.1|	-	1.2e-05	25.2	0.0	1.6e-05	24.8	0.0	1.3	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
GATase_5	PF13507.6	gi|257051436|ref|YP_003129269.1|	-	0.031	13.4	0.0	0.045	12.8	0.0	1.4	1	0	0	1	1	1	0	CobB/CobQ-like	glutamine	amidotransferase	domain
GATase_3	PF07685.14	gi|257051436|ref|YP_003129269.1|	-	0.067	12.8	0.0	0.093	12.3	0.0	1.3	1	0	0	1	1	1	0	CobB/CobQ-like	glutamine	amidotransferase	domain
Glyco_transf_4	PF13439.6	gi|257051436|ref|YP_003129269.1|	-	0.1	12.6	0.1	0.44	10.5	0.1	2.1	1	1	0	1	1	1	0	Glycosyltransferase	Family	4
Catalase_C	PF18011.1	gi|257051436|ref|YP_003129269.1|	-	0.18	11.4	0.0	0.37	10.4	0.0	1.5	1	1	0	1	1	1	0	C-terminal	domain	found	in	long	catalases
ABC_tran	PF00005.27	gi|257051439|ref|YP_003129272.1|	-	7.5e-24	84.8	0.0	1e-23	84.4	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|257051439|ref|YP_003129272.1|	-	3.2e-10	40.3	1.1	0.00017	21.5	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_23	PF13476.6	gi|257051439|ref|YP_003129272.1|	-	0.002	18.6	0.4	0.0056	17.2	0.4	1.6	2	0	0	2	2	2	1	AAA	domain
AAA_15	PF13175.6	gi|257051439|ref|YP_003129272.1|	-	0.0024	17.7	0.1	1.5	8.5	0.1	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_28	PF13521.6	gi|257051439|ref|YP_003129272.1|	-	0.04	14.2	0.2	0.88	9.8	0.0	2.4	2	1	0	2	2	2	0	AAA	domain
AAA_29	PF13555.6	gi|257051439|ref|YP_003129272.1|	-	0.14	11.9	0.1	0.27	11.0	0.1	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|257051439|ref|YP_003129272.1|	-	0.15	12.4	0.4	0.34	11.3	0.4	1.8	1	1	0	1	1	1	0	AAA	ATPase	domain
TrkA_N	PF02254.18	gi|257051440|ref|YP_003129273.1|	-	1.8e-46	157.2	4.5	1.6e-23	83.2	0.8	2.9	2	1	0	2	2	2	2	TrkA-N	domain
TrkA_C	PF02080.21	gi|257051440|ref|YP_003129273.1|	-	2.3e-27	94.6	0.5	1.6e-13	50.3	0.0	3.0	2	0	0	2	2	2	2	TrkA-C	domain
Ion_trans_2	PF07885.16	gi|257051440|ref|YP_003129273.1|	-	0.00025	21.0	6.3	0.00059	19.7	6.3	1.6	1	0	0	1	1	1	1	Ion	channel
NAD_binding_7	PF13241.6	gi|257051440|ref|YP_003129273.1|	-	0.0019	18.6	0.3	0.0096	16.3	0.1	2.3	2	1	0	2	2	2	1	Putative	NAD(P)-binding
2-Hacid_dh_C	PF02826.19	gi|257051440|ref|YP_003129273.1|	-	0.0052	16.2	0.0	0.034	13.5	0.0	2.1	2	0	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
RMMBL	PF07521.12	gi|257051440|ref|YP_003129273.1|	-	0.0079	16.1	0.0	6.5	6.8	0.0	2.4	2	0	0	2	2	2	2	Zn-dependent	metallo-hydrolase	RNA	specificity	domain
KH_1	PF00013.29	gi|257051440|ref|YP_003129273.1|	-	0.023	14.5	1.0	0.35	10.7	0.0	3.3	3	1	1	4	4	4	0	KH	domain
bPH_2	PF03703.14	gi|257051441|ref|YP_003129274.1|	-	2.4e-44	149.4	7.9	4e-21	75.0	0.6	3.3	3	0	0	3	3	3	3	Bacterial	PH	domain
bPH_4	PF06713.11	gi|257051441|ref|YP_003129274.1|	-	0.12	12.5	0.0	0.61	10.2	0.0	2.1	2	0	0	2	2	2	0	Bacterial	PH	domain
FA_desaturase	PF00487.24	gi|257051441|ref|YP_003129274.1|	-	0.5	10.1	7.3	0.33	10.7	0.8	2.5	3	0	0	3	3	3	0	Fatty	acid	desaturase
bPH_2	PF03703.14	gi|257051442|ref|YP_003129275.1|	-	2.8e-16	59.5	0.0	3.8e-16	59.0	0.0	1.2	1	0	0	1	1	1	1	Bacterial	PH	domain
DUF4229	PF14012.6	gi|257051442|ref|YP_003129275.1|	-	0.045	13.8	4.4	0.075	13.1	4.4	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4229)
DUF1349	PF07081.11	gi|257051443|ref|YP_003129276.1|	-	4.5e-17	62.3	1.3	1.5e-08	34.6	0.1	3.2	2	1	0	2	2	2	2	Protein	of	unknown	function	(DUF1349)
fn3	PF00041.21	gi|257051443|ref|YP_003129276.1|	-	5.3e-05	23.5	0.1	0.15	12.4	0.0	2.8	2	0	0	2	2	2	2	Fibronectin	type	III	domain
Pec_lyase_C	PF00544.19	gi|257051443|ref|YP_003129276.1|	-	0.0002	21.0	4.0	0.0013	18.4	4.0	2.1	1	1	0	1	1	1	1	Pectate	lyase
Pur_ac_phosph_N	PF16656.5	gi|257051443|ref|YP_003129276.1|	-	0.0063	17.1	18.7	0.055	14.0	2.6	4.4	5	1	0	5	5	5	2	Purple	acid	Phosphatase,	N-terminal	domain
TAT_signal	PF10518.9	gi|257051443|ref|YP_003129276.1|	-	0.13	12.2	0.5	0.38	10.7	0.5	1.9	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Pyr_redox_2	PF07992.14	gi|257051444|ref|YP_003129277.1|	-	2.5e-18	66.3	3.2	3.2e-10	39.7	2.4	2.0	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|257051444|ref|YP_003129277.1|	-	1.1e-13	51.1	0.5	1.4e-08	34.3	0.0	2.7	1	1	1	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|257051444|ref|YP_003129277.1|	-	7e-11	41.5	0.1	0.00011	21.1	0.0	2.1	2	0	0	2	2	2	2	HI0933-like	protein
DAO	PF01266.24	gi|257051444|ref|YP_003129277.1|	-	1.8e-09	37.6	0.6	0.00043	20.0	0.1	2.2	1	1	1	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|257051444|ref|YP_003129277.1|	-	4.4e-07	29.3	1.3	3.1e-06	26.6	0.0	2.0	1	1	1	2	2	2	1	FAD	binding	domain
GIDA	PF01134.22	gi|257051444|ref|YP_003129277.1|	-	6.9e-07	28.7	0.6	0.00043	19.5	0.0	2.3	1	1	1	2	2	2	2	Glucose	inhibited	division	protein	A
NAD_binding_9	PF13454.6	gi|257051444|ref|YP_003129277.1|	-	8.6e-07	29.1	0.2	0.00089	19.3	0.1	2.4	2	0	0	2	2	2	2	FAD-NAD(P)-binding
FAD_binding_3	PF01494.19	gi|257051444|ref|YP_003129277.1|	-	8.8e-07	28.5	2.8	0.00044	19.6	0.0	2.1	1	1	1	2	2	2	2	FAD	binding	domain
Thi4	PF01946.17	gi|257051444|ref|YP_003129277.1|	-	1.9e-05	24.0	0.2	0.00012	21.5	0.0	2.0	2	0	0	2	2	2	1	Thi4	family
FAD_oxidored	PF12831.7	gi|257051444|ref|YP_003129277.1|	-	3.9e-05	23.2	0.0	8.8e-05	22.0	0.0	1.6	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.6	gi|257051444|ref|YP_003129277.1|	-	0.00052	20.2	0.0	0.0013	18.9	0.0	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
K_oxygenase	PF13434.6	gi|257051444|ref|YP_003129277.1|	-	0.0014	17.8	0.3	0.39	9.8	0.1	2.0	1	1	1	2	2	2	2	L-lysine	6-monooxygenase	(NADPH-requiring)
Trp_halogenase	PF04820.14	gi|257051444|ref|YP_003129277.1|	-	0.0022	16.9	1.2	0.39	9.5	0.4	2.1	2	0	0	2	2	2	2	Tryptophan	halogenase
Lycopene_cycl	PF05834.12	gi|257051444|ref|YP_003129277.1|	-	0.0041	16.2	1.1	0.026	13.6	0.1	2.0	1	1	1	2	2	2	1	Lycopene	cyclase	protein
AlaDh_PNT_C	PF01262.21	gi|257051444|ref|YP_003129277.1|	-	0.0069	15.7	0.1	0.015	14.6	0.0	1.6	1	1	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
Pyr_redox	PF00070.27	gi|257051444|ref|YP_003129277.1|	-	0.062	13.9	0.3	0.84	10.2	0.3	2.4	1	1	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
TIM	PF00121.18	gi|257051445|ref|YP_003129278.1|	-	2e-05	24.1	0.0	2.7e-05	23.7	0.0	1.1	1	0	0	1	1	1	1	Triosephosphate	isomerase
ThiG	PF05690.14	gi|257051445|ref|YP_003129278.1|	-	0.00027	20.4	5.1	0.00036	19.9	1.2	2.3	2	1	1	3	3	3	1	Thiazole	biosynthesis	protein	ThiG
FMN_dh	PF01070.18	gi|257051445|ref|YP_003129278.1|	-	0.00099	18.2	1.5	0.00099	18.2	1.5	1.6	2	1	0	2	2	2	1	FMN-dependent	dehydrogenase
IGPS	PF00218.21	gi|257051445|ref|YP_003129278.1|	-	0.0034	16.6	0.0	0.0054	15.9	0.0	1.4	1	0	0	1	1	1	1	Indole-3-glycerol	phosphate	synthase
Hydrolase_like	PF13242.6	gi|257051445|ref|YP_003129278.1|	-	0.019	15.0	1.2	0.17	12.0	0.2	2.6	2	0	0	2	2	2	0	HAD-hyrolase-like
NMO	PF03060.15	gi|257051445|ref|YP_003129278.1|	-	1.7	7.9	11.2	0.59	9.5	6.2	2.0	1	1	1	2	2	2	0	Nitronate	monooxygenase
Response_reg	PF00072.24	gi|257051446|ref|YP_003129279.1|	-	2.5e-19	69.5	0.6	4.9e-19	68.6	0.6	1.5	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HalX	PF08663.10	gi|257051446|ref|YP_003129279.1|	-	2.3e-12	47.0	8.3	4.6e-12	46.1	8.3	1.5	1	0	0	1	1	1	1	HalX	domain
LemA	PF04011.12	gi|257051446|ref|YP_003129279.1|	-	0.0059	16.5	1.0	0.0094	15.8	1.0	1.3	1	0	0	1	1	1	1	LemA	family
Troponin	PF00992.20	gi|257051446|ref|YP_003129279.1|	-	0.015	15.6	3.7	0.023	15.0	3.7	1.3	1	0	0	1	1	1	0	Troponin
BLOC1_2	PF10046.9	gi|257051446|ref|YP_003129279.1|	-	0.041	14.2	1.5	0.065	13.5	1.5	1.3	1	0	0	1	1	1	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
bZIP_2	PF07716.15	gi|257051446|ref|YP_003129279.1|	-	0.13	12.4	6.8	0.58	10.3	6.8	2.1	1	1	0	1	1	1	0	Basic	region	leucine	zipper
DUF2203	PF09969.9	gi|257051446|ref|YP_003129279.1|	-	0.33	11.7	2.5	3.1	8.5	2.0	2.1	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2203)
BST2	PF16716.5	gi|257051446|ref|YP_003129279.1|	-	0.37	11.4	3.4	0.57	10.8	3.4	1.4	1	0	0	1	1	1	0	Bone	marrow	stromal	antigen	2
DUF4140	PF13600.6	gi|257051446|ref|YP_003129279.1|	-	0.66	10.4	4.7	1.6	9.2	4.7	1.8	1	1	0	1	1	1	0	N-terminal	domain	of	unknown	function	(DUF4140)
ABC_tran_CTD	PF16326.5	gi|257051446|ref|YP_003129279.1|	-	1.4	9.2	11.7	0.93	9.8	8.6	2.3	2	1	1	3	3	3	0	ABC	transporter	C-terminal	domain
DUF5595	PF18077.1	gi|257051446|ref|YP_003129279.1|	-	4	7.6	6.3	33	4.6	0.1	2.7	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF5595)
HTH_3	PF01381.22	gi|257051447|ref|YP_003129280.1|	-	1.1e-10	41.3	0.1	1.5e-10	40.9	0.1	1.2	1	0	0	1	1	1	1	Helix-turn-helix
HTH_31	PF13560.6	gi|257051447|ref|YP_003129280.1|	-	4.4e-09	36.5	0.1	7.1e-09	35.9	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_19	PF12844.7	gi|257051447|ref|YP_003129280.1|	-	2.7e-07	30.5	0.2	4.4e-07	29.8	0.2	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_25	PF13413.6	gi|257051447|ref|YP_003129280.1|	-	0.0001	22.1	0.5	0.00016	21.5	0.5	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
FadA	PF09403.10	gi|257051447|ref|YP_003129280.1|	-	0.027	14.9	0.5	0.05	14.1	0.5	1.3	1	0	0	1	1	1	0	Adhesion	protein	FadA
FAM47	PF14642.6	gi|257051447|ref|YP_003129280.1|	-	0.028	14.0	0.0	0.039	13.5	0.0	1.1	1	0	0	1	1	1	0	FAM47	family
SR-25	PF10500.9	gi|257051447|ref|YP_003129280.1|	-	0.03	13.9	3.7	0.033	13.8	3.7	1.3	1	0	0	1	1	1	0	Nuclear	RNA-splicing-associated	protein
PhnA_Zn_Ribbon	PF08274.12	gi|257051447|ref|YP_003129280.1|	-	0.09	12.7	0.2	0.22	11.5	0.2	1.7	1	1	0	1	1	1	0	PhnA	Zinc-Ribbon
Period_C	PF12114.8	gi|257051447|ref|YP_003129280.1|	-	0.94	9.0	9.6	1.4	8.5	9.6	1.4	1	0	0	1	1	1	0	Period	protein	2/3C-terminal	region
LUD_dom	PF02589.15	gi|257051448|ref|YP_003129281.1|	-	6.1e-12	45.6	0.0	4.1e-11	43.0	0.0	1.9	1	1	0	1	1	1	1	LUD	domain
LUD_dom	PF02589.15	gi|257051449|ref|YP_003129282.1|	-	3.4e-43	147.6	0.6	1e-42	146.0	0.1	2.0	2	0	0	2	2	2	1	LUD	domain
Fer4_8	PF13183.6	gi|257051449|ref|YP_003129282.1|	-	6.5e-09	36.1	4.0	1.6e-08	34.9	4.0	1.7	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|257051449|ref|YP_003129282.1|	-	3.1e-08	34.0	3.1	5.9e-08	33.1	3.1	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|257051449|ref|YP_003129282.1|	-	1.6e-07	31.3	3.2	0.0008	19.5	0.2	2.4	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|257051449|ref|YP_003129282.1|	-	4.8e-06	26.6	6.0	1.4e-05	25.1	6.1	1.8	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|257051449|ref|YP_003129282.1|	-	7.9e-06	26.4	6.6	1.7e-05	25.3	6.6	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|257051449|ref|YP_003129282.1|	-	0.00011	21.9	13.9	0.00028	20.6	2.9	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
CCG	PF02754.16	gi|257051449|ref|YP_003129282.1|	-	0.00016	21.8	1.2	0.003	17.7	0.0	3.1	3	0	0	3	3	3	1	Cysteine-rich	domain
Fer4_21	PF14697.6	gi|257051449|ref|YP_003129282.1|	-	0.00024	21.2	8.4	0.0014	18.7	8.4	2.1	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|257051449|ref|YP_003129282.1|	-	0.0015	18.5	2.3	0.0015	18.5	2.3	2.4	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|257051449|ref|YP_003129282.1|	-	0.0036	17.3	14.6	0.016	15.3	3.8	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Packaging_FI	PF14000.6	gi|257051449|ref|YP_003129282.1|	-	0.005	17.3	3.5	0.005	17.3	3.5	1.9	2	0	0	2	2	2	1	DNA	packaging	protein	FI
Fer4_3	PF12798.7	gi|257051449|ref|YP_003129282.1|	-	0.017	16.1	4.8	0.017	16.1	4.8	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_20	PF14691.6	gi|257051449|ref|YP_003129282.1|	-	0.018	14.8	2.3	0.048	13.4	0.1	2.2	2	0	0	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_16	PF13484.6	gi|257051449|ref|YP_003129282.1|	-	0.054	14.4	10.2	0.067	14.1	0.7	2.6	2	0	0	2	2	2	0	4Fe-4S	double	cluster	binding	domain
Fer4_22	PF17179.4	gi|257051449|ref|YP_003129282.1|	-	0.061	14.2	7.4	0.076	13.9	1.1	2.5	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|257051449|ref|YP_003129282.1|	-	0.072	13.6	13.6	0.24	12.0	3.6	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
ydhR	PF08803.11	gi|257051449|ref|YP_003129282.1|	-	0.19	11.7	0.0	0.99	9.4	0.0	2.2	2	0	0	2	2	2	0	Putative	mono-oxygenase	ydhR
Fer4_18	PF13746.6	gi|257051449|ref|YP_003129282.1|	-	0.29	11.3	9.5	0.14	12.4	0.9	2.5	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
TAT_signal	PF10518.9	gi|257051450|ref|YP_003129283.1|	-	0.047	13.6	0.8	0.11	12.3	0.8	1.7	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF1422	PF07226.11	gi|257051451|ref|YP_003129284.1|	-	0.0028	17.7	0.5	0.0032	17.4	0.5	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1422)
CDP-OH_P_transf	PF01066.21	gi|257051452|ref|YP_003129285.1|	-	3.9e-09	37.1	0.5	3.9e-09	37.1	0.5	2.4	2	1	0	2	2	2	1	CDP-alcohol	phosphatidyltransferase
DUF4051	PF13260.6	gi|257051452|ref|YP_003129285.1|	-	0.17	11.6	0.2	0.32	10.7	0.2	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4051)
AAA_18	PF13238.6	gi|257051453|ref|YP_003129286.1|	-	3e-20	73.1	0.0	4e-20	72.7	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|257051453|ref|YP_003129286.1|	-	2.1e-06	27.9	0.5	0.052	13.7	0.0	2.1	1	1	1	2	2	2	2	AAA	domain
AAA_28	PF13521.6	gi|257051453|ref|YP_003129286.1|	-	0.00012	22.4	1.8	0.0017	18.6	0.2	2.2	1	1	1	2	2	2	1	AAA	domain
AAA_24	PF13479.6	gi|257051453|ref|YP_003129286.1|	-	0.00057	19.7	0.0	0.00095	18.9	0.0	1.4	1	1	0	1	1	1	1	AAA	domain
AAA_17	PF13207.6	gi|257051453|ref|YP_003129286.1|	-	0.00063	20.2	0.8	1.4	9.3	0.1	2.4	1	1	0	2	2	2	2	AAA	domain
dNK	PF01712.19	gi|257051453|ref|YP_003129286.1|	-	0.014	15.3	0.1	0.17	11.7	0.0	2.1	1	1	0	2	2	2	0	Deoxynucleoside	kinase
NTPase_1	PF03266.15	gi|257051453|ref|YP_003129286.1|	-	0.043	13.7	0.0	0.069	13.0	0.0	1.6	1	0	0	1	1	1	0	NTPase
SKI	PF01202.22	gi|257051453|ref|YP_003129286.1|	-	0.075	13.2	0.3	0.22	11.6	0.1	1.7	2	0	0	2	2	2	0	Shikimate	kinase
AAA_22	PF13401.6	gi|257051453|ref|YP_003129286.1|	-	0.083	13.2	0.0	0.11	12.7	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
CoaE	PF01121.20	gi|257051453|ref|YP_003129286.1|	-	0.095	12.4	0.3	2.4	7.8	0.1	2.1	2	0	0	2	2	2	0	Dephospho-CoA	kinase
AAA_30	PF13604.6	gi|257051453|ref|YP_003129286.1|	-	0.099	12.3	0.0	0.17	11.6	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
ADK	PF00406.22	gi|257051453|ref|YP_003129286.1|	-	0.1	12.7	0.1	9.5	6.3	0.0	2.1	2	0	0	2	2	2	0	Adenylate	kinase
AAA	PF00004.29	gi|257051453|ref|YP_003129286.1|	-	0.11	12.9	0.1	0.53	10.7	0.0	1.9	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Trns_repr_metal	PF02583.17	gi|257051453|ref|YP_003129286.1|	-	0.14	12.5	0.1	0.6	10.5	0.1	2.0	1	1	0	1	1	1	0	Metal-sensitive	transcriptional	repressor
AAA_16	PF13191.6	gi|257051453|ref|YP_003129286.1|	-	0.17	12.2	1.1	0.54	10.6	1.1	1.8	1	1	0	1	1	1	0	AAA	ATPase	domain
ATPase	PF06745.13	gi|257051453|ref|YP_003129286.1|	-	0.22	10.8	0.7	0.37	10.1	0.1	1.6	2	0	0	2	2	2	0	KaiC
Aminotran_1_2	PF00155.21	gi|257051454|ref|YP_003129287.1|	-	4.4e-61	207.1	0.0	5e-61	206.9	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Cys_Met_Meta_PP	PF01053.20	gi|257051454|ref|YP_003129287.1|	-	0.0092	14.5	0.0	0.025	13.1	0.0	1.6	2	0	0	2	2	2	1	Cys/Met	metabolism	PLP-dependent	enzyme
Alliinase_C	PF04864.13	gi|257051454|ref|YP_003129287.1|	-	0.12	11.2	0.0	0.18	10.6	0.0	1.2	1	0	0	1	1	1	0	Allinase
TnsD	PF15978.5	gi|257051454|ref|YP_003129287.1|	-	0.26	10.3	0.0	0.47	9.4	0.0	1.4	1	0	0	1	1	1	0	Tn7-like	transposition	protein	D
AAA	PF00004.29	gi|257051455|ref|YP_003129288.1|	-	2.4e-44	150.9	0.1	2.4e-44	150.9	0.1	2.1	3	0	0	3	3	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|257051455|ref|YP_003129288.1|	-	1e-11	44.4	2.1	3e-11	42.9	2.1	1.9	1	0	0	1	1	1	1	AAA+	lid	domain
AAA_2	PF07724.14	gi|257051455|ref|YP_003129288.1|	-	2.4e-08	34.3	0.4	8.5e-08	32.5	0.0	2.2	2	0	0	2	2	1	1	AAA	domain	(Cdc48	subfamily)
RuvB_N	PF05496.12	gi|257051455|ref|YP_003129288.1|	-	3.9e-07	29.9	0.0	1.1e-06	28.5	0.0	1.7	2	0	0	2	2	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_22	PF13401.6	gi|257051455|ref|YP_003129288.1|	-	2.8e-06	27.7	0.5	0.00027	21.2	0.5	2.8	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|257051455|ref|YP_003129288.1|	-	1.3e-05	25.7	6.3	0.00024	21.5	0.0	3.2	2	2	1	3	3	3	1	AAA	ATPase	domain
AAA_5	PF07728.14	gi|257051455|ref|YP_003129288.1|	-	2.9e-05	24.1	2.5	0.0001	22.3	0.3	2.7	2	1	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
Prot_ATP_ID_OB	PF16450.5	gi|257051455|ref|YP_003129288.1|	-	4.2e-05	23.4	1.2	8.4e-05	22.4	0.3	2.0	2	0	0	2	2	1	1	Proteasomal	ATPase	OB	C-terminal	domain
AAA_17	PF13207.6	gi|257051455|ref|YP_003129288.1|	-	0.00013	22.4	7.2	0.062	13.7	0.1	2.9	2	1	0	2	2	2	2	AAA	domain
GrpE	PF01025.19	gi|257051455|ref|YP_003129288.1|	-	0.00063	19.4	8.2	0.0019	17.9	8.2	1.9	1	0	0	1	1	1	1	GrpE
AAA_33	PF13671.6	gi|257051455|ref|YP_003129288.1|	-	0.00065	19.9	0.6	0.0022	18.1	0.0	2.2	2	1	0	2	2	2	1	AAA	domain
AAA_14	PF13173.6	gi|257051455|ref|YP_003129288.1|	-	0.0012	18.8	0.3	0.0046	17.0	0.0	2.0	2	1	0	2	2	2	1	AAA	domain
Mg_chelatase	PF01078.21	gi|257051455|ref|YP_003129288.1|	-	0.0016	17.8	0.3	0.0077	15.6	0.2	2.0	1	1	1	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
AAA_18	PF13238.6	gi|257051455|ref|YP_003129288.1|	-	0.0017	18.9	2.2	0.015	15.8	0.0	2.6	2	1	0	2	2	2	1	AAA	domain
TIP49	PF06068.13	gi|257051455|ref|YP_003129288.1|	-	0.0021	17.3	1.8	0.003	16.8	0.0	2.1	2	1	1	3	3	3	1	TIP49	P-loop	domain
AAA_7	PF12775.7	gi|257051455|ref|YP_003129288.1|	-	0.0025	17.4	1.4	0.07	12.6	0.0	2.4	2	0	0	2	2	2	1	P-loop	containing	dynein	motor	region
Sigma54_activat	PF00158.26	gi|257051455|ref|YP_003129288.1|	-	0.0026	17.5	0.8	0.045	13.4	0.2	2.8	2	1	0	2	2	1	1	Sigma-54	interaction	domain
NACHT	PF05729.12	gi|257051455|ref|YP_003129288.1|	-	0.0032	17.4	1.4	0.051	13.5	0.0	2.6	2	1	1	3	3	2	1	NACHT	domain
DUF2334	PF10096.9	gi|257051455|ref|YP_003129288.1|	-	0.004	16.8	0.1	0.008	15.9	0.1	1.5	1	1	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2334)
IstB_IS21	PF01695.17	gi|257051455|ref|YP_003129288.1|	-	0.0052	16.5	0.0	0.012	15.3	0.0	1.7	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_3	PF07726.11	gi|257051455|ref|YP_003129288.1|	-	0.0057	16.5	0.2	0.028	14.3	0.0	2.3	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Atg14	PF10186.9	gi|257051455|ref|YP_003129288.1|	-	0.006	15.7	1.0	0.0081	15.3	1.0	1.2	1	0	0	1	1	1	1	Vacuolar	sorting	38	and	autophagy-related	subunit	14
TniB	PF05621.11	gi|257051455|ref|YP_003129288.1|	-	0.0072	15.8	0.0	1.9	7.9	0.0	2.5	1	1	1	2	2	2	1	Bacterial	TniB	protein
DUF815	PF05673.13	gi|257051455|ref|YP_003129288.1|	-	0.0072	15.5	0.0	0.015	14.5	0.0	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
CPT	PF07931.12	gi|257051455|ref|YP_003129288.1|	-	0.0094	15.8	0.1	0.024	14.5	0.0	1.8	2	0	0	2	2	1	1	Chloramphenicol	phosphotransferase-like	protein
AAA_28	PF13521.6	gi|257051455|ref|YP_003129288.1|	-	0.01	16.1	1.0	0.022	15.0	0.1	2.3	2	1	0	2	2	1	0	AAA	domain
Torsin	PF06309.11	gi|257051455|ref|YP_003129288.1|	-	0.013	15.6	0.1	0.059	13.5	0.0	1.9	2	0	0	2	2	2	0	Torsin
TsaE	PF02367.17	gi|257051455|ref|YP_003129288.1|	-	0.019	15.0	0.0	0.042	13.8	0.0	1.6	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
RNA_helicase	PF00910.22	gi|257051455|ref|YP_003129288.1|	-	0.02	15.3	0.0	0.053	13.9	0.0	1.8	1	0	0	1	1	1	0	RNA	helicase
NB-ARC	PF00931.22	gi|257051455|ref|YP_003129288.1|	-	0.021	14.0	0.0	0.072	12.3	0.0	2.0	2	1	0	2	2	2	0	NB-ARC	domain
DUF4438	PF14505.6	gi|257051455|ref|YP_003129288.1|	-	0.022	13.7	0.0	0.037	13.0	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4438)
Sigma54_activ_2	PF14532.6	gi|257051455|ref|YP_003129288.1|	-	0.028	14.5	0.0	0.091	12.9	0.0	1.8	1	0	0	1	1	1	0	Sigma-54	interaction	domain
AAA_30	PF13604.6	gi|257051455|ref|YP_003129288.1|	-	0.029	14.1	0.2	0.095	12.4	0.2	1.9	1	1	0	1	1	1	0	AAA	domain
bZIP_1	PF00170.21	gi|257051455|ref|YP_003129288.1|	-	0.031	14.4	14.7	0.31	11.1	7.3	2.7	1	1	1	2	2	2	0	bZIP	transcription	factor
ATPase	PF06745.13	gi|257051455|ref|YP_003129288.1|	-	0.052	12.9	6.8	0.36	10.1	0.0	3.3	2	1	1	3	3	3	0	KaiC
TUDOR	PF00567.24	gi|257051455|ref|YP_003129288.1|	-	0.055	13.5	0.1	0.16	12.0	0.1	1.8	1	0	0	1	1	1	0	Tudor	domain
Takusan	PF04822.13	gi|257051455|ref|YP_003129288.1|	-	0.056	13.3	6.3	0.15	11.9	6.3	1.7	1	0	0	1	1	1	0	Takusan
AAA_24	PF13479.6	gi|257051455|ref|YP_003129288.1|	-	0.087	12.5	0.1	0.087	12.5	0.1	2.9	3	2	0	3	3	3	0	AAA	domain
AAA_13	PF13166.6	gi|257051455|ref|YP_003129288.1|	-	0.087	11.5	5.7	1.2	7.7	6.2	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_11	PF13086.6	gi|257051455|ref|YP_003129288.1|	-	0.09	12.5	0.1	0.09	12.5	0.1	2.4	1	1	1	2	2	2	0	AAA	domain
Cep57_CLD_2	PF14197.6	gi|257051455|ref|YP_003129288.1|	-	0.11	12.6	10.0	0.32	11.1	10.0	1.7	1	0	0	1	1	1	0	Centrosome	localisation	domain	of	PPC89
AAA_25	PF13481.6	gi|257051455|ref|YP_003129288.1|	-	0.14	11.7	5.1	0.67	9.5	0.1	3.2	2	1	0	3	3	3	0	AAA	domain
ResIII	PF04851.15	gi|257051455|ref|YP_003129288.1|	-	0.15	12.0	2.7	7.8	6.5	0.0	2.5	1	1	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
ABC_tran	PF00005.27	gi|257051455|ref|YP_003129288.1|	-	0.36	11.3	0.0	0.36	11.3	0.0	2.8	2	2	0	2	2	1	0	ABC	transporter
SKA1	PF07160.12	gi|257051455|ref|YP_003129288.1|	-	0.63	9.8	9.5	2.5	7.9	8.7	2.1	1	1	1	2	2	2	0	Spindle	and	kinetochore-associated	protein	1
DUF4337	PF14235.6	gi|257051455|ref|YP_003129288.1|	-	0.87	9.7	3.5	1.8	8.7	3.5	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4337)
GAS	PF13851.6	gi|257051455|ref|YP_003129288.1|	-	1	8.7	15.1	2.1	7.7	15.1	1.6	1	1	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
SlyX	PF04102.12	gi|257051455|ref|YP_003129288.1|	-	3.7	8.2	9.8	6.2	7.5	7.8	2.5	1	1	1	2	2	1	0	SlyX
TMF_TATA_bd	PF12325.8	gi|257051455|ref|YP_003129288.1|	-	3.8	7.7	14.7	1.8	8.8	11.9	1.9	2	0	0	2	2	1	0	TATA	element	modulatory	factor	1	TATA	binding
Fez1	PF06818.15	gi|257051455|ref|YP_003129288.1|	-	5	7.5	13.0	11	6.3	12.5	1.9	1	1	1	2	2	2	0	Fez1
LTXXQ	PF07813.12	gi|257051455|ref|YP_003129288.1|	-	5.7	7.7	8.9	1.8	9.4	5.3	2.0	2	0	0	2	2	1	0	LTXXQ	motif	family	protein
APG6_N	PF17675.1	gi|257051455|ref|YP_003129288.1|	-	8.2	7.0	17.6	0.09	13.3	9.2	2.0	3	0	0	3	3	1	0	Apg6	coiled-coil	region
HTH_24	PF13412.6	gi|257051456|ref|YP_003129289.1|	-	1.6e-05	24.4	0.0	2.2e-05	23.9	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|257051456|ref|YP_003129289.1|	-	0.00087	19.1	0.1	0.0012	18.7	0.1	1.2	1	0	0	1	1	1	1	MarR	family
GntR	PF00392.21	gi|257051456|ref|YP_003129289.1|	-	0.0021	17.6	0.1	0.003	17.2	0.1	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_20	PF12840.7	gi|257051456|ref|YP_003129289.1|	-	0.0023	18.0	0.1	0.0031	17.5	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR	PF01047.22	gi|257051456|ref|YP_003129289.1|	-	0.0053	16.7	0.0	0.0076	16.1	0.0	1.2	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|257051456|ref|YP_003129289.1|	-	0.015	15.2	0.1	0.019	14.8	0.1	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.6	gi|257051456|ref|YP_003129289.1|	-	0.015	15.8	0.1	0.02	15.4	0.1	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
TFIIE_alpha	PF02002.17	gi|257051456|ref|YP_003129289.1|	-	0.02	14.7	0.0	0.026	14.4	0.0	1.1	1	0	0	1	1	1	0	TFIIE	alpha	subunit
HTH_5	PF01022.20	gi|257051456|ref|YP_003129289.1|	-	0.024	14.5	0.1	0.033	14.1	0.1	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_IclR	PF09339.10	gi|257051456|ref|YP_003129289.1|	-	0.088	12.6	0.4	0.14	12.0	0.4	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_43	PF09904.9	gi|257051456|ref|YP_003129289.1|	-	0.13	12.2	0.0	0.2	11.6	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn	helix
Metallophos	PF00149.28	gi|257051457|ref|YP_003129290.1|	-	3.4e-11	44.0	0.7	5.1e-11	43.5	0.7	1.4	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|257051457|ref|YP_003129290.1|	-	5.6e-11	42.9	0.2	1.2e-10	41.9	0.2	1.5	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
AAA_23	PF13476.6	gi|257051458|ref|YP_003129291.1|	-	3.8e-19	70.0	7.9	3.8e-19	70.0	7.9	7.0	1	1	2	3	3	1	1	AAA	domain
AAA_15	PF13175.6	gi|257051458|ref|YP_003129291.1|	-	1.2e-07	31.8	23.7	6.6e-06	26.1	0.0	5.3	2	1	2	4	4	3	2	AAA	ATPase	domain
Spc7	PF08317.11	gi|257051458|ref|YP_003129291.1|	-	1.8e-07	30.3	106.0	0.00013	21.0	18.6	5.4	1	1	4	5	5	5	5	Spc7	kinetochore	protein
SMC_N	PF02463.19	gi|257051458|ref|YP_003129291.1|	-	1.4e-06	28.0	55.5	1.7e-05	24.4	55.5	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_27	PF13514.6	gi|257051458|ref|YP_003129291.1|	-	5.8e-05	22.8	0.0	5.8e-05	22.8	0.0	5.4	6	1	0	6	6	5	1	AAA	domain
AAA_29	PF13555.6	gi|257051458|ref|YP_003129291.1|	-	8.5e-05	22.2	0.0	0.00016	21.4	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
Baculo_PEP_C	PF04513.12	gi|257051458|ref|YP_003129291.1|	-	0.00014	22.0	22.3	0.02	15.0	1.7	5.3	3	2	3	7	7	7	2	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Atg14	PF10186.9	gi|257051458|ref|YP_003129291.1|	-	0.00017	20.8	75.1	0.32	10.0	9.2	5.6	1	1	2	4	4	4	2	Vacuolar	sorting	38	and	autophagy-related	subunit	14
AAA_13	PF13166.6	gi|257051458|ref|YP_003129291.1|	-	0.00024	19.9	64.5	0.038	12.6	0.3	5.1	2	1	4	6	6	6	2	AAA	domain
DUF3584	PF12128.8	gi|257051458|ref|YP_003129291.1|	-	0.00059	17.5	107.5	0.00063	17.4	45.4	3.7	2	1	2	4	4	4	3	Protein	of	unknown	function	(DUF3584)
AAA_21	PF13304.6	gi|257051458|ref|YP_003129291.1|	-	0.00066	19.6	32.3	0.023	14.5	12.5	4.3	3	2	0	3	3	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SbcCD_C	PF13558.6	gi|257051458|ref|YP_003129291.1|	-	0.0013	19.0	0.0	0.0037	17.5	0.0	1.8	1	0	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
NPV_P10	PF05531.12	gi|257051458|ref|YP_003129291.1|	-	0.0085	16.5	23.4	10	6.7	0.1	7.6	4	2	3	8	8	8	0	Nucleopolyhedrovirus	P10	protein
DUF1664	PF07889.12	gi|257051458|ref|YP_003129291.1|	-	0.018	15.1	46.7	0.07	13.2	0.6	7.0	2	2	7	9	9	9	0	Protein	of	unknown	function	(DUF1664)
TPR_MLP1_2	PF07926.12	gi|257051458|ref|YP_003129291.1|	-	0.019	15.0	114.2	0.35	10.9	10.7	9.2	1	1	7	9	9	9	0	TPR/MLP1/MLP2-like	protein
FapA	PF03961.13	gi|257051458|ref|YP_003129291.1|	-	0.025	13.2	60.5	0.14	10.8	4.7	5.8	1	1	5	7	7	7	0	Flagellar	Assembly	Protein	A
GAS	PF13851.6	gi|257051458|ref|YP_003129291.1|	-	0.089	12.1	82.2	0.038	13.3	20.6	5.5	2	2	3	5	5	5	0	Growth-arrest	specific	micro-tubule	binding
MAD	PF05557.13	gi|257051458|ref|YP_003129291.1|	-	0.15	10.4	95.6	0.057	11.8	32.8	3.4	1	1	2	3	3	3	0	Mitotic	checkpoint	protein
DUF4041	PF13250.6	gi|257051458|ref|YP_003129291.1|	-	0.18	11.7	0.5	21	5.1	0.0	4.0	3	1	1	4	4	4	0	Domain	of	unknown	function	(DUF4041)
FliJ	PF02050.16	gi|257051458|ref|YP_003129291.1|	-	0.19	11.9	79.3	0.28	11.4	11.0	7.8	3	3	5	8	8	8	0	Flagellar	FliJ	protein
DUF745	PF05335.13	gi|257051458|ref|YP_003129291.1|	-	0.4	10.4	57.2	0.04	13.6	10.0	5.7	3	3	2	5	5	5	0	Protein	of	unknown	function	(DUF745)
T3SSipB	PF16535.5	gi|257051458|ref|YP_003129291.1|	-	0.54	10.7	47.4	1.4	9.3	8.3	5.9	1	1	5	6	6	6	0	Type	III	cell	invasion	protein	SipB
ABC_tran	PF00005.27	gi|257051458|ref|YP_003129291.1|	-	0.75	10.3	0.0	0.75	10.3	0.0	4.8	3	2	0	3	3	2	0	ABC	transporter
FlaC_arch	PF05377.11	gi|257051458|ref|YP_003129291.1|	-	0.93	9.9	57.9	0.8	10.1	0.5	10.0	8	3	0	9	9	9	0	Flagella	accessory	protein	C	(FlaC)
BLOC1_2	PF10046.9	gi|257051458|ref|YP_003129291.1|	-	1.2	9.5	52.1	3.3	8.1	0.2	8.4	4	2	4	8	8	8	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
ATG16	PF08614.11	gi|257051458|ref|YP_003129291.1|	-	1.2	9.3	119.1	0.022	15.0	20.2	6.1	2	2	3	5	5	5	0	Autophagy	protein	16	(ATG16)
DUF948	PF06103.11	gi|257051458|ref|YP_003129291.1|	-	1.9	8.8	23.5	0.86	9.9	1.7	6.9	6	3	1	7	7	5	0	Bacterial	protein	of	unknown	function	(DUF948)
CENP-K	PF11802.8	gi|257051458|ref|YP_003129291.1|	-	2.1	7.8	39.4	3	7.3	12.5	4.0	1	1	1	3	3	3	0	Centromere-associated	protein	K
Sec34	PF04136.15	gi|257051458|ref|YP_003129291.1|	-	2.6	7.9	33.3	1	9.3	1.0	5.7	3	2	2	5	5	5	0	Sec34-like	family
RPW8	PF05659.11	gi|257051458|ref|YP_003129291.1|	-	2.9	7.6	31.8	0.35	10.6	0.5	7.0	4	3	1	5	5	5	0	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
DASH_Spc19	PF08287.11	gi|257051458|ref|YP_003129291.1|	-	5.2	7.0	85.0	0.29	11.0	1.1	6.1	2	2	2	5	5	4	0	Spc19
EzrA	PF06160.12	gi|257051458|ref|YP_003129291.1|	-	8.7	4.4	78.5	0.19	9.9	16.8	4.5	1	1	3	4	4	4	0	Septation	ring	formation	regulator,	EzrA
DUF202	PF02656.15	gi|257051460|ref|YP_003129293.1|	-	1	9.8	4.0	1.7	9.2	3.9	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF202)
DNA_pol_B	PF00136.21	gi|257051462|ref|YP_003129295.1|	-	1e-47	162.9	0.0	2e-47	162.0	0.0	1.3	1	0	0	1	1	1	1	DNA	polymerase	family	B
DNA_pol_B_exo1	PF03104.19	gi|257051462|ref|YP_003129295.1|	-	7.2e-25	87.8	0.3	9.7e-18	64.4	0.1	2.7	2	1	0	2	2	2	2	DNA	polymerase	family	B,	exonuclease	domain
Intein_splicing	PF14890.6	gi|257051462|ref|YP_003129295.1|	-	1.1e-10	41.5	0.3	6.6e-10	39.1	0.0	2.4	3	0	0	3	3	3	1	Intein	splicing	domain
Hom_end	PF05204.14	gi|257051462|ref|YP_003129295.1|	-	1.2e-07	31.9	0.0	8.3e-05	22.7	0.0	2.6	2	0	0	2	2	2	2	Homing	endonuclease
Hint	PF01079.20	gi|257051462|ref|YP_003129295.1|	-	9.8e-07	28.5	0.0	2.1e-06	27.4	0.0	1.4	1	0	0	1	1	1	1	Hint	module
Hom_end_hint	PF05203.16	gi|257051462|ref|YP_003129295.1|	-	1.5e-06	28.4	0.9	3.9e-06	27.0	0.1	2.1	2	0	0	2	2	2	1	Hom_end-associated	Hint
LAGLIDADG_3	PF14528.6	gi|257051462|ref|YP_003129295.1|	-	1.4e-05	25.3	0.1	0.17	12.2	0.0	3.1	2	0	0	2	2	2	2	LAGLIDADG-like	domain
ABC_tran	PF00005.27	gi|257051463|ref|YP_003129296.1|	-	1.7e-16	61.0	0.0	5.3e-16	59.4	0.0	1.8	1	1	0	1	1	1	1	ABC	transporter
SMC_N	PF02463.19	gi|257051463|ref|YP_003129296.1|	-	3.3e-06	26.7	0.6	0.014	14.8	0.1	2.3	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_21	PF13304.6	gi|257051463|ref|YP_003129296.1|	-	2.6e-05	24.2	0.0	0.0072	16.2	0.0	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA	PF00004.29	gi|257051463|ref|YP_003129296.1|	-	0.00015	22.2	0.0	0.081	13.3	0.0	2.4	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_5	PF07728.14	gi|257051463|ref|YP_003129296.1|	-	0.002	18.2	0.5	0.9	9.5	0.0	2.6	3	0	0	3	3	3	2	AAA	domain	(dynein-related	subfamily)
AAA_29	PF13555.6	gi|257051463|ref|YP_003129296.1|	-	0.0045	16.7	0.1	0.0085	15.8	0.1	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
Zeta_toxin	PF06414.12	gi|257051463|ref|YP_003129296.1|	-	0.029	13.7	0.0	0.06	12.6	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
AAA_22	PF13401.6	gi|257051463|ref|YP_003129296.1|	-	0.032	14.5	0.7	1.3	9.3	0.0	2.3	2	1	0	2	2	2	0	AAA	domain
AAA_24	PF13479.6	gi|257051463|ref|YP_003129296.1|	-	0.073	12.8	0.0	0.14	11.8	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_28	PF13521.6	gi|257051463|ref|YP_003129296.1|	-	0.074	13.3	0.1	0.7	10.1	0.0	2.4	3	0	0	3	3	2	0	AAA	domain
AAA_18	PF13238.6	gi|257051463|ref|YP_003129296.1|	-	0.086	13.4	0.0	0.25	11.9	0.0	2.0	1	1	0	1	1	1	0	AAA	domain
AAA_23	PF13476.6	gi|257051463|ref|YP_003129296.1|	-	0.1	13.1	4.4	0.78	10.2	0.1	2.3	2	0	0	2	2	2	0	AAA	domain
AAA_25	PF13481.6	gi|257051463|ref|YP_003129296.1|	-	0.14	11.7	0.0	0.38	10.3	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
AAA_15	PF13175.6	gi|257051463|ref|YP_003129296.1|	-	0.17	11.6	1.3	0.55	9.9	0.0	1.9	1	1	0	2	2	2	0	AAA	ATPase	domain
Cytidylate_kin	PF02224.18	gi|257051463|ref|YP_003129296.1|	-	0.17	11.6	0.0	0.43	10.3	0.0	1.6	1	0	0	1	1	1	0	Cytidylate	kinase
AAA_33	PF13671.6	gi|257051463|ref|YP_003129296.1|	-	0.19	11.9	0.0	0.27	11.4	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Phe_tRNA-synt_N	PF02912.18	gi|257051463|ref|YP_003129296.1|	-	3.9	7.5	6.2	0.88	9.6	1.3	2.3	3	0	0	3	3	3	0	Aminoacyl	tRNA	synthetase	class	II,	N-terminal	domain
UPF0051	PF01458.17	gi|257051464|ref|YP_003129297.1|	-	1.1e-72	244.2	0.8	1.5e-72	243.8	0.8	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	family	(UPF0051)
UPF0051	PF01458.17	gi|257051465|ref|YP_003129298.1|	-	5.5e-64	215.8	1.7	7e-64	215.5	1.7	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	family	(UPF0051)
TAT_signal	PF10518.9	gi|257051466|ref|YP_003129299.1|	-	0.061	13.2	1.7	0.061	13.2	1.7	1.6	1	1	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF5010_C	PF18099.1	gi|257051466|ref|YP_003129299.1|	-	0.081	13.1	0.0	0.13	12.4	0.0	1.3	1	1	0	1	1	1	0	DUF5010	C-terminal	domain
DsbC	PF11412.8	gi|257051466|ref|YP_003129299.1|	-	0.13	12.3	0.0	0.24	11.4	0.0	1.4	1	0	0	1	1	1	0	Disulphide	bond	corrector	protein	DsbC
UCR_Fe-S_N	PF10399.9	gi|257051466|ref|YP_003129299.1|	-	1.2	8.5	5.6	0.23	10.8	0.8	2.0	1	1	1	2	2	2	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
BAR	PF03114.18	gi|257051467|ref|YP_003129300.1|	-	0.024	14.3	2.3	0.029	14.0	2.3	1.2	1	0	0	1	1	1	0	BAR	domain
Not3	PF04065.15	gi|257051467|ref|YP_003129300.1|	-	0.027	13.9	0.9	0.048	13.1	0.7	1.4	1	1	0	1	1	1	0	Not1	N-terminal	domain,	CCR4-Not	complex	component
DUF5312	PF17239.2	gi|257051467|ref|YP_003129300.1|	-	0.033	12.5	0.4	0.058	11.7	0.2	1.4	1	1	0	1	1	1	0	Family	of	unknown	function	(DUF5312)
FUSC	PF04632.12	gi|257051467|ref|YP_003129300.1|	-	0.91	8.0	3.7	1.1	7.8	3.7	1.1	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
GvpG	PF05120.12	gi|257051467|ref|YP_003129300.1|	-	1.2	9.2	6.9	13	5.9	0.7	3.0	1	1	2	3	3	3	0	Gas	vesicle	protein	G
Fe_dep_repress	PF01325.19	gi|257051468|ref|YP_003129301.1|	-	2.2e-18	66.2	0.2	4.5e-18	65.2	0.0	1.6	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Fe_dep_repr_C	PF02742.15	gi|257051468|ref|YP_003129301.1|	-	1e-11	44.8	0.0	4.3e-11	42.7	0.0	1.9	2	0	0	2	2	2	1	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
MarR_2	PF12802.7	gi|257051468|ref|YP_003129301.1|	-	3.1e-05	23.8	0.0	6.1e-05	22.8	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|257051468|ref|YP_003129301.1|	-	4.9e-05	22.8	0.0	8.3e-05	22.1	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|257051468|ref|YP_003129301.1|	-	0.00025	20.9	0.0	0.00037	20.4	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_Crp_2	PF13545.6	gi|257051468|ref|YP_003129301.1|	-	0.00031	20.6	0.0	0.00058	19.8	0.0	1.4	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_27	PF13463.6	gi|257051468|ref|YP_003129301.1|	-	0.00034	21.1	0.1	0.0043	17.5	0.0	2.2	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_AsnC-type	PF13404.6	gi|257051468|ref|YP_003129301.1|	-	0.00061	19.6	0.0	0.0019	18.0	0.0	1.8	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
TrmB	PF01978.19	gi|257051468|ref|YP_003129301.1|	-	0.00092	19.1	0.0	0.0014	18.5	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.7	gi|257051468|ref|YP_003129301.1|	-	0.0058	16.7	0.0	0.013	15.6	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
Rrf2	PF02082.20	gi|257051468|ref|YP_003129301.1|	-	0.0066	16.8	0.0	0.01	16.1	0.0	1.4	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_IclR	PF09339.10	gi|257051468|ref|YP_003129301.1|	-	0.016	15.0	0.0	0.029	14.2	0.0	1.5	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_1	PF00126.27	gi|257051468|ref|YP_003129301.1|	-	0.048	13.6	0.0	0.12	12.3	0.0	1.7	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
DUF995	PF06191.12	gi|257051469|ref|YP_003129302.1|	-	0.091	12.4	0.3	0.22	11.2	0.3	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF995)
DUF1054	PF06335.12	gi|257051469|ref|YP_003129302.1|	-	0.096	12.6	0.0	0.16	11.9	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1054)
DUF1249	PF06853.12	gi|257051470|ref|YP_003129303.1|	-	0.082	12.9	0.0	0.15	12.1	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1249)
CSD	PF00313.22	gi|257051473|ref|YP_003129306.1|	-	5.1e-17	61.5	0.4	7.5e-17	61.0	0.4	1.3	1	1	0	1	1	1	1	'Cold-shock'	DNA-binding	domain
Rho_RNA_bind	PF07497.12	gi|257051473|ref|YP_003129306.1|	-	0.011	15.6	0.0	0.013	15.3	0.0	1.1	1	0	0	1	1	1	0	Rho	termination	factor,	RNA-binding	domain
MarR	PF01047.22	gi|257051474|ref|YP_003129307.1|	-	3e-05	23.8	0.0	4.5e-05	23.3	0.0	1.2	1	0	0	1	1	1	1	MarR	family
B-block_TFIIIC	PF04182.12	gi|257051474|ref|YP_003129307.1|	-	0.00036	20.6	0.0	0.0004	20.5	0.0	1.2	1	0	0	1	1	1	1	B-block	binding	subunit	of	TFIIIC
MarR_2	PF12802.7	gi|257051474|ref|YP_003129307.1|	-	0.0044	16.9	0.0	0.0064	16.4	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.6	gi|257051474|ref|YP_003129307.1|	-	0.012	16.1	0.1	0.015	15.8	0.1	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Rio2_N	PF09202.11	gi|257051474|ref|YP_003129307.1|	-	0.12	12.6	0.0	0.17	12.1	0.0	1.4	1	1	0	1	1	1	0	Rio2,	N-terminal
SBP_bac_6	PF13343.6	gi|257051475|ref|YP_003129308.1|	-	4.5e-17	62.3	0.2	7.7e-17	61.5	0.2	1.3	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|257051475|ref|YP_003129308.1|	-	1.7e-08	34.8	7.3	5.1e-08	33.2	7.3	1.7	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.6	gi|257051475|ref|YP_003129308.1|	-	1.1e-05	25.3	0.1	1.9e-05	24.5	0.1	1.5	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.9	gi|257051475|ref|YP_003129308.1|	-	0.0055	16.5	1.0	0.0085	15.9	1.0	1.3	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
BPD_transp_1	PF00528.22	gi|257051476|ref|YP_003129309.1|	-	8.3e-30	103.9	34.2	1.9e-17	63.6	11.3	2.9	2	1	0	2	2	2	2	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.27	gi|257051477|ref|YP_003129310.1|	-	5e-33	114.5	0.0	7.5e-33	113.9	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
TOBE_2	PF08402.10	gi|257051477|ref|YP_003129310.1|	-	1.1e-11	44.8	0.5	5.6e-11	42.5	0.5	2.3	1	0	0	1	1	1	1	TOBE	domain
AAA_21	PF13304.6	gi|257051477|ref|YP_003129310.1|	-	1.9e-09	37.8	0.0	2.4e-05	24.3	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA	PF00004.29	gi|257051477|ref|YP_003129310.1|	-	0.0009	19.7	0.0	0.0035	17.8	0.0	1.9	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.6	gi|257051477|ref|YP_003129310.1|	-	0.00094	19.5	0.1	0.0038	17.5	0.1	2.0	1	1	0	1	1	1	1	AAA	domain
CysA_C_terminal	PF17850.1	gi|257051477|ref|YP_003129310.1|	-	0.002	18.6	0.1	0.021	15.4	0.0	2.8	2	0	0	2	2	2	1	CysA	C-terminal	regulatory	domain
SMC_N	PF02463.19	gi|257051477|ref|YP_003129310.1|	-	0.0028	17.1	0.0	0.16	11.4	0.0	2.1	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
Rad17	PF03215.15	gi|257051477|ref|YP_003129310.1|	-	0.0057	16.6	0.0	0.0084	16.1	0.0	1.2	1	0	0	1	1	1	1	Rad17	P-loop	domain
TOBE	PF03459.17	gi|257051477|ref|YP_003129310.1|	-	0.013	15.8	1.1	0.061	13.6	0.1	2.8	2	1	0	2	2	2	0	TOBE	domain
AAA_16	PF13191.6	gi|257051477|ref|YP_003129310.1|	-	0.014	15.8	0.2	0.043	14.2	0.0	1.8	2	0	0	2	2	2	0	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|257051477|ref|YP_003129310.1|	-	0.02	14.8	0.0	0.035	14.0	0.0	1.3	1	0	0	1	1	1	0	RsgA	GTPase
TniB	PF05621.11	gi|257051477|ref|YP_003129310.1|	-	0.046	13.1	0.0	1.7	8.0	0.0	2.1	2	0	0	2	2	2	0	Bacterial	TniB	protein
OB_MalK	PF17912.1	gi|257051477|ref|YP_003129310.1|	-	0.052	14.4	0.1	0.29	12.0	0.1	2.4	2	0	0	2	2	2	0	MalK	OB	fold	domain
AAA_33	PF13671.6	gi|257051477|ref|YP_003129310.1|	-	0.054	13.6	0.4	0.13	12.4	0.4	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_28	PF13521.6	gi|257051477|ref|YP_003129310.1|	-	0.082	13.2	1.3	0.091	13.0	0.1	1.6	2	0	0	2	2	1	0	AAA	domain
AAA_25	PF13481.6	gi|257051477|ref|YP_003129310.1|	-	0.085	12.4	0.1	0.39	10.2	0.0	2.0	2	1	0	2	2	2	0	AAA	domain
AAA_30	PF13604.6	gi|257051477|ref|YP_003129310.1|	-	0.1	12.3	0.1	0.32	10.7	0.1	1.8	1	0	0	1	1	1	0	AAA	domain
SRP54	PF00448.22	gi|257051477|ref|YP_003129310.1|	-	0.14	11.8	0.1	0.29	10.7	0.1	1.5	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_14	PF13173.6	gi|257051477|ref|YP_003129310.1|	-	0.16	12.0	0.0	0.31	11.1	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_23	PF13476.6	gi|257051477|ref|YP_003129310.1|	-	0.33	11.4	0.2	0.64	10.5	0.2	1.4	1	0	0	1	1	1	0	AAA	domain
AIRS_C	PF02769.22	gi|257051478|ref|YP_003129311.1|	-	5.7e-18	65.5	2.6	8.9e-18	64.9	2.6	1.3	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.24	gi|257051478|ref|YP_003129311.1|	-	2.1e-11	44.3	0.2	2.1e-11	44.3	0.2	2.2	3	1	0	3	3	3	1	AIR	synthase	related	protein,	N-terminal	domain
DUF1611_N	PF17396.2	gi|257051478|ref|YP_003129311.1|	-	0.16	12.2	0.7	0.85	9.9	0.0	2.4	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1611_N)	Rossmann-like	domain
AMP-binding	PF00501.28	gi|257051479|ref|YP_003129312.1|	-	6e-80	268.9	0.1	7.1e-80	268.7	0.1	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|257051479|ref|YP_003129312.1|	-	7.1e-18	65.4	0.1	1.6e-17	64.2	0.1	1.7	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
MR_MLE_C	PF13378.6	gi|257051480|ref|YP_003129313.1|	-	1.4e-46	158.8	6.9	1.5e-46	158.7	5.3	1.7	2	0	0	2	2	2	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|257051480|ref|YP_003129313.1|	-	0.0084	16.3	0.4	1	9.6	0.2	3.3	2	1	0	2	2	2	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
UbiA	PF01040.18	gi|257051481|ref|YP_003129314.1|	-	8e-39	133.4	17.1	8e-39	133.4	17.1	1.4	2	0	0	2	2	2	1	UbiA	prenyltransferase	family
ECH_1	PF00378.20	gi|257051482|ref|YP_003129315.1|	-	1.7e-55	188.0	0.0	3.1e-55	187.2	0.0	1.3	1	1	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
ECH_2	PF16113.5	gi|257051482|ref|YP_003129315.1|	-	9.1e-15	55.0	0.0	1.3e-14	54.5	0.0	1.3	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
PRC	PF05239.16	gi|257051483|ref|YP_003129316.1|	-	1.5e-11	44.2	0.2	2e-11	43.8	0.2	1.1	1	0	0	1	1	1	1	PRC-barrel	domain
TrkA_N	PF02254.18	gi|257051484|ref|YP_003129317.1|	-	5.3e-21	75.0	1.7	5.3e-21	75.0	1.7	2.0	2	0	0	2	2	1	1	TrkA-N	domain
DHH	PF01368.20	gi|257051484|ref|YP_003129317.1|	-	2.6e-13	50.0	2.9	3.8e-12	46.3	0.6	2.4	2	0	0	2	2	2	1	DHH	family
ApbA	PF02558.16	gi|257051484|ref|YP_003129317.1|	-	2.9e-07	30.2	0.0	2.2e-06	27.4	0.0	2.3	1	1	1	2	2	2	1	Ketopantoate	reductase	PanE/ApbA
Sacchrp_dh_NADP	PF03435.18	gi|257051484|ref|YP_003129317.1|	-	2.9e-07	30.8	1.5	1.8e-06	28.3	0.2	2.9	2	1	0	3	3	3	1	Saccharopine	dehydrogenase	NADP	binding	domain
DHHA1	PF02272.19	gi|257051484|ref|YP_003129317.1|	-	9.8e-07	29.3	0.2	9.6e-06	26.1	0.0	2.5	2	1	1	3	3	3	1	DHHA1	domain
F420_oxidored	PF03807.17	gi|257051484|ref|YP_003129317.1|	-	2.8e-06	27.8	0.1	1.2e-05	25.8	0.1	2.2	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
Epimerase	PF01370.21	gi|257051484|ref|YP_003129317.1|	-	9.9e-05	21.9	0.1	0.00019	21.0	0.1	1.5	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
NAD_binding_2	PF03446.15	gi|257051484|ref|YP_003129317.1|	-	0.00028	21.1	0.0	0.00064	19.9	0.0	1.6	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
adh_short_C2	PF13561.6	gi|257051484|ref|YP_003129317.1|	-	0.0011	18.6	2.6	0.024	14.2	0.6	2.6	2	0	0	2	2	2	1	Enoyl-(Acyl	carrier	protein)	reductase
UDPG_MGDP_dh_N	PF03721.14	gi|257051484|ref|YP_003129317.1|	-	0.0013	18.3	0.0	0.0039	16.8	0.0	1.8	1	1	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NAD_binding_7	PF13241.6	gi|257051484|ref|YP_003129317.1|	-	0.0017	18.8	3.2	0.0044	17.4	1.1	2.4	1	1	1	2	2	2	1	Putative	NAD(P)-binding
IlvN	PF07991.12	gi|257051484|ref|YP_003129317.1|	-	0.0031	17.1	0.1	0.0069	16.0	0.1	1.5	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
NAD_Gly3P_dh_N	PF01210.23	gi|257051484|ref|YP_003129317.1|	-	0.0034	17.4	0.0	0.0071	16.3	0.0	1.6	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
FAD_binding_3	PF01494.19	gi|257051484|ref|YP_003129317.1|	-	0.0054	16.0	0.0	0.0095	15.2	0.0	1.4	1	0	0	1	1	1	1	FAD	binding	domain
Shikimate_DH	PF01488.20	gi|257051484|ref|YP_003129317.1|	-	0.0075	16.3	0.4	0.017	15.1	0.1	1.7	2	0	0	2	2	1	1	Shikimate	/	quinate	5-dehydrogenase
3HCDH_N	PF02737.18	gi|257051484|ref|YP_003129317.1|	-	0.0093	15.9	0.0	0.029	14.3	0.0	1.9	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|257051484|ref|YP_003129317.1|	-	0.02	14.2	0.2	0.02	14.2	0.2	2.2	3	1	0	3	3	3	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
XdhC_C	PF13478.6	gi|257051484|ref|YP_003129317.1|	-	0.025	15.1	0.8	0.085	13.4	0.1	2.3	2	0	0	2	2	2	0	XdhC	Rossmann	domain
2-Hacid_dh_C	PF02826.19	gi|257051484|ref|YP_003129317.1|	-	0.026	13.9	0.0	0.068	12.5	0.0	1.7	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
adh_short	PF00106.25	gi|257051484|ref|YP_003129317.1|	-	0.039	13.4	0.5	0.19	11.1	0.2	2.2	2	0	0	2	2	2	0	short	chain	dehydrogenase
NAD_binding_8	PF13450.6	gi|257051484|ref|YP_003129317.1|	-	0.069	13.4	0.0	0.18	12.0	0.0	1.7	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
NAD_binding_3	PF03447.16	gi|257051484|ref|YP_003129317.1|	-	0.086	13.5	2.4	0.2	12.3	1.1	2.3	1	1	0	1	1	1	0	Homoserine	dehydrogenase,	NAD	binding	domain
APS_kinase	PF01583.20	gi|257051484|ref|YP_003129317.1|	-	0.095	12.6	0.1	0.22	11.4	0.1	1.5	1	0	0	1	1	1	0	Adenylylsulphate	kinase
DUF2092	PF09865.9	gi|257051485|ref|YP_003129318.1|	-	1e-06	28.3	0.0	1.9e-06	27.4	0.0	1.4	1	0	0	1	1	1	1	Predicted	periplasmic	protein	(DUF2092)
LolA_like	PF17131.4	gi|257051485|ref|YP_003129318.1|	-	0.01	15.6	0.0	0.072	12.8	0.0	2.2	2	1	0	2	2	2	0	Outer	membrane	lipoprotein-sorting	protein
AP2	PF00847.20	gi|257051485|ref|YP_003129318.1|	-	0.084	13.1	0.0	0.3	11.3	0.0	1.9	1	0	0	1	1	1	0	AP2	domain
Cnn_1N	PF07989.11	gi|257051486|ref|YP_003129319.1|	-	0.13	12.4	0.3	0.13	12.4	0.3	2.0	2	0	0	2	2	2	0	Centrosomin	N-terminal	motif	1
SLATT_3	PF18184.1	gi|257051486|ref|YP_003129319.1|	-	0.44	10.7	3.1	2.2	8.4	0.7	2.0	2	0	0	2	2	2	0	SMODS	and	SLOG-associating	2TM	effector	domain	3
DUF4140	PF13600.6	gi|257051486|ref|YP_003129319.1|	-	0.91	10.0	7.9	0.73	10.3	0.5	2.1	2	0	0	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
Cwf_Cwc_15	PF04889.12	gi|257051486|ref|YP_003129319.1|	-	1.1	8.9	13.4	0.071	12.8	2.8	2.0	2	0	0	2	2	2	0	Cwf15/Cwc15	cell	cycle	control	protein
DUF2797	PF10977.8	gi|257051487|ref|YP_003129320.1|	-	1.6e-24	87.1	4.1	2.8e-21	76.5	1.9	2.3	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF2797)
FeoA	PF04023.14	gi|257051487|ref|YP_003129320.1|	-	0.096	13.0	0.0	0.33	11.3	0.1	2.0	2	0	0	2	2	2	0	FeoA	domain
PQQ_3	PF13570.6	gi|257051488|ref|YP_003129321.1|	-	6.4e-42	141.0	28.8	4.2e-09	36.6	0.0	8.1	9	1	0	9	9	9	5	PQQ-like	domain
PQQ	PF01011.21	gi|257051488|ref|YP_003129321.1|	-	2.6e-37	125.0	17.5	1.2e-09	37.6	0.0	6.8	8	1	0	8	8	8	5	PQQ	enzyme	repeat
PQQ_2	PF13360.6	gi|257051488|ref|YP_003129321.1|	-	8.2e-33	114.0	4.6	2.1e-22	79.9	1.5	3.1	2	2	0	2	2	2	2	PQQ-like	domain
TAT_signal	PF10518.9	gi|257051488|ref|YP_003129321.1|	-	0.01	15.7	6.0	0.022	14.6	6.0	1.6	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
PepSY	PF03413.19	gi|257051488|ref|YP_003129321.1|	-	0.038	14.5	3.0	1.9	9.1	0.1	3.8	4	1	0	4	4	4	0	Peptidase	propeptide	and	YPEB	domain
Exotox-A_bind	PF09101.10	gi|257051488|ref|YP_003129321.1|	-	0.079	12.3	0.0	0.33	10.3	0.0	1.9	2	0	0	2	2	2	0	Exotoxin	A	binding
TFIIB	PF00382.19	gi|257051489|ref|YP_003129322.1|	-	6.1e-07	29.4	0.2	1.1e-06	28.5	0.2	1.4	1	1	0	1	1	1	1	Transcription	factor	TFIIB	repeat
HTH_AsnC-type	PF13404.6	gi|257051489|ref|YP_003129322.1|	-	0.00061	19.6	1.0	0.039	13.8	0.2	2.2	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
Sigma70_r4	PF04545.16	gi|257051489|ref|YP_003129322.1|	-	0.003	17.0	0.2	0.16	11.5	0.1	2.2	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_23	PF13384.6	gi|257051489|ref|YP_003129322.1|	-	0.0054	16.5	0.1	0.018	14.8	0.1	1.8	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_28	PF13518.6	gi|257051489|ref|YP_003129322.1|	-	0.006	16.7	0.2	0.017	15.2	0.1	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|257051489|ref|YP_003129322.1|	-	0.022	14.7	0.2	0.27	11.2	0.0	2.1	2	0	0	2	2	2	0	HTH	domain
HTH_30	PF13556.6	gi|257051489|ref|YP_003129322.1|	-	0.13	12.1	0.0	0.32	10.8	0.0	1.6	2	0	0	2	2	2	0	PucR	C-terminal	helix-turn-helix	domain
CTP_transf_like	PF01467.26	gi|257051490|ref|YP_003129323.1|	-	2.3e-14	53.8	0.0	2.8e-14	53.5	0.0	1.1	1	0	0	1	1	1	1	Cytidylyltransferase-like
FAD_syn	PF06574.12	gi|257051490|ref|YP_003129323.1|	-	0.0013	18.7	0.3	0.02	14.8	0.1	2.1	2	0	0	2	2	2	1	FAD	synthetase
TrmB	PF01978.19	gi|257051491|ref|YP_003129324.1|	-	9.1e-07	28.7	0.1	1.4e-06	28.1	0.1	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.7	gi|257051491|ref|YP_003129324.1|	-	1.3e-05	25.2	0.1	5.7e-05	23.1	0.1	1.9	1	1	1	2	2	2	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|257051491|ref|YP_003129324.1|	-	4.9e-05	22.8	0.0	7.9e-05	22.1	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.10	gi|257051491|ref|YP_003129324.1|	-	0.0017	18.1	0.0	0.0026	17.5	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
TFIIE_alpha	PF02002.17	gi|257051491|ref|YP_003129324.1|	-	0.0044	16.9	0.0	0.0079	16.0	0.0	1.5	1	1	0	1	1	1	1	TFIIE	alpha	subunit
HTH_Crp_2	PF13545.6	gi|257051491|ref|YP_003129324.1|	-	0.0095	15.9	0.1	0.015	15.3	0.1	1.3	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|257051491|ref|YP_003129324.1|	-	0.0099	16.1	0.0	0.019	15.2	0.0	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
GntR	PF00392.21	gi|257051491|ref|YP_003129324.1|	-	0.01	15.5	0.1	0.019	14.6	0.1	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
MarR_2	PF12802.7	gi|257051491|ref|YP_003129324.1|	-	0.011	15.6	0.1	0.03	14.2	0.1	1.8	2	0	0	2	2	2	0	MarR	family
HTH_5	PF01022.20	gi|257051491|ref|YP_003129324.1|	-	0.011	15.6	0.0	0.018	14.9	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Rrf2	PF02082.20	gi|257051491|ref|YP_003129324.1|	-	0.026	14.9	0.0	0.045	14.1	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
GCS2	PF04107.13	gi|257051492|ref|YP_003129325.1|	-	5.9e-70	235.9	0.2	7e-70	235.7	0.2	1.1	1	0	0	1	1	1	1	Glutamate-cysteine	ligase	family	2(GCS2)
Fibrillarin	PF01269.17	gi|257051493|ref|YP_003129326.1|	-	5.7e-57	192.4	0.0	6.6e-57	192.2	0.0	1.0	1	0	0	1	1	1	1	Fibrillarin
Histidinol_dh	PF00815.20	gi|257051493|ref|YP_003129326.1|	-	0.14	11.2	0.0	0.17	10.8	0.0	1.1	1	0	0	1	1	1	0	Histidinol	dehydrogenase
Nop	PF01798.18	gi|257051494|ref|YP_003129327.1|	-	2.6e-38	131.8	0.0	6.2e-38	130.5	0.0	1.4	1	1	0	1	1	1	1	snoRNA	binding	domain,	fibrillarin
UPF0047	PF01894.17	gi|257051495|ref|YP_003129328.1|	-	9.6e-36	122.4	0.0	1.2e-35	122.2	0.0	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0047
SpoVR	PF04293.13	gi|257051496|ref|YP_003129329.1|	-	2.6e-84	283.3	0.3	8.3e-71	238.9	0.0	2.1	2	0	0	2	2	2	2	SpoVR	like	protein
DUF444	PF04285.12	gi|257051497|ref|YP_003129330.1|	-	7.1e-121	404.2	0.1	8e-121	404.0	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF444)
UBA	PF00627.31	gi|257051497|ref|YP_003129330.1|	-	0.13	12.2	0.0	0.33	10.9	0.0	1.7	1	0	0	1	1	1	0	UBA/TS-N	domain
PrkA	PF06798.12	gi|257051498|ref|YP_003129331.1|	-	1.8e-38	132.7	0.0	4.2e-38	131.5	0.0	1.7	1	0	0	1	1	1	1	PrkA	serine	protein	kinase	C-terminal	domain
AAA_PrkA	PF08298.11	gi|257051498|ref|YP_003129331.1|	-	1.8e-13	50.1	0.0	1.2e-10	40.9	0.0	3.1	2	1	0	2	2	2	2	PrkA	AAA	domain
PrkA	PF06798.12	gi|257051499|ref|YP_003129332.1|	-	2.5e-68	230.5	7.0	2.5e-68	230.5	7.0	2.4	2	0	0	2	2	2	1	PrkA	serine	protein	kinase	C-terminal	domain
AAA_PrkA	PF08298.11	gi|257051499|ref|YP_003129332.1|	-	7.3e-65	219.2	0.0	1.1e-64	218.7	0.0	1.2	1	0	0	1	1	1	1	PrkA	AAA	domain
AAA_18	PF13238.6	gi|257051499|ref|YP_003129332.1|	-	0.031	14.8	0.2	0.86	10.1	0.0	3.2	2	1	0	2	2	2	0	AAA	domain
UPF0179	PF03684.13	gi|257051501|ref|YP_003129334.1|	-	2.7e-46	157.0	0.0	3e-46	156.8	0.0	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0179)
LRV_FeS	PF05484.11	gi|257051501|ref|YP_003129334.1|	-	0.0072	16.3	2.4	2.7	8.1	0.1	2.9	3	0	0	3	3	3	2	LRV	protein	FeS4	cluster
DDE_Tnp_1_6	PF13751.6	gi|257051501|ref|YP_003129334.1|	-	0.035	14.3	0.0	0.067	13.4	0.0	1.5	1	0	0	1	1	1	0	Transposase	DDE	domain
Asparaginase_2	PF01112.18	gi|257051502|ref|YP_003129335.1|	-	5.1e-61	206.3	16.7	6.1e-61	206.1	16.7	1.0	1	0	0	1	1	1	1	Asparaginase
bPH_3	PF14470.6	gi|257051503|ref|YP_003129336.1|	-	0.011	16.1	0.0	0.015	15.6	0.0	1.3	1	0	0	1	1	1	0	Bacterial	PH	domain
DUF4278	PF14105.6	gi|257051503|ref|YP_003129336.1|	-	0.014	15.8	0.1	0.044	14.2	0.0	1.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4278)
FinO_N	PF12602.8	gi|257051503|ref|YP_003129336.1|	-	0.025	14.9	1.0	0.17	12.2	0.1	2.5	3	0	0	3	3	3	0	Fertility	inhibition	protein	N	terminal
HTH_15	PF12324.8	gi|257051503|ref|YP_003129336.1|	-	0.11	12.4	0.1	0.48	10.4	0.0	1.9	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	alkylmercury	lyase
zf-ISL3	PF14690.6	gi|257051503|ref|YP_003129336.1|	-	0.16	12.7	0.9	9	7.1	0.2	2.3	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
CPSase_sm_chain	PF00988.22	gi|257051504|ref|YP_003129337.1|	-	2.7e-35	121.0	0.0	1e-34	119.1	0.0	2.0	2	0	0	2	2	2	1	Carbamoyl-phosphate	synthase	small	chain,	CPSase	domain
GATase	PF00117.28	gi|257051504|ref|YP_003129337.1|	-	1.5e-34	119.4	0.0	2e-34	119.1	0.0	1.2	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|257051504|ref|YP_003129337.1|	-	5.9e-05	22.9	0.2	0.046	13.5	0.1	2.3	1	1	1	2	2	2	2	Peptidase	C26
HTH_AsnC-type	PF13404.6	gi|257051505|ref|YP_003129338.1|	-	1.6e-16	59.8	0.6	3.3e-16	58.8	0.6	1.6	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.6	gi|257051505|ref|YP_003129338.1|	-	8.4e-15	54.1	0.1	1.4e-14	53.3	0.1	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
AsnC_trans_reg	PF01037.21	gi|257051505|ref|YP_003129338.1|	-	1.3e-08	34.6	1.0	2.2e-08	34.0	1.0	1.3	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HTH_20	PF12840.7	gi|257051505|ref|YP_003129338.1|	-	9.8e-06	25.5	0.0	2.1e-05	24.5	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
Sigma70_r4_2	PF08281.12	gi|257051505|ref|YP_003129338.1|	-	0.00081	19.0	0.0	0.0027	17.3	0.0	1.8	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_IclR	PF09339.10	gi|257051505|ref|YP_003129338.1|	-	0.002	17.9	0.0	0.0039	17.0	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Sigma70_r4	PF04545.16	gi|257051505|ref|YP_003129338.1|	-	0.0021	17.5	0.1	0.0045	16.5	0.1	1.6	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_Tnp_ISL3	PF13542.6	gi|257051505|ref|YP_003129338.1|	-	0.0024	17.2	0.0	0.0056	16.1	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_DeoR	PF08220.12	gi|257051505|ref|YP_003129338.1|	-	0.004	16.9	0.2	0.0071	16.1	0.2	1.4	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
MarR	PF01047.22	gi|257051505|ref|YP_003129338.1|	-	0.0043	17.0	0.1	0.0099	15.8	0.0	1.5	2	0	0	2	2	1	1	MarR	family
HTH_11	PF08279.12	gi|257051505|ref|YP_003129338.1|	-	0.0098	15.8	0.0	0.015	15.2	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
HTH_23	PF13384.6	gi|257051505|ref|YP_003129338.1|	-	0.014	15.1	0.0	0.023	14.5	0.0	1.4	1	0	0	1	1	1	0	Homeodomain-like	domain
MarR_2	PF12802.7	gi|257051505|ref|YP_003129338.1|	-	0.018	14.9	0.1	0.034	14.0	0.1	1.4	1	0	0	1	1	1	0	MarR	family
HrcA_DNA-bdg	PF03444.15	gi|257051505|ref|YP_003129338.1|	-	0.027	14.1	0.0	0.054	13.2	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
FaeA	PF04703.12	gi|257051505|ref|YP_003129338.1|	-	0.033	14.5	0.0	0.055	13.8	0.0	1.4	1	0	0	1	1	1	0	FaeA-like	protein
MIase	PF02426.16	gi|257051505|ref|YP_003129338.1|	-	0.052	13.7	0.1	0.55	10.4	0.0	2.1	1	1	1	2	2	2	0	Muconolactone	delta-isomerase
HTH_Mga	PF08280.11	gi|257051505|ref|YP_003129338.1|	-	0.074	13.1	0.0	0.13	12.3	0.0	1.4	1	0	0	1	1	1	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
DUF746	PF05344.11	gi|257051505|ref|YP_003129338.1|	-	0.11	12.3	0.0	0.45	10.4	0.0	1.9	2	0	0	2	2	2	0	Domain	of	Unknown	Function	(DUF746)
HTH_5	PF01022.20	gi|257051505|ref|YP_003129338.1|	-	0.12	12.3	0.0	0.18	11.7	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.19	gi|257051505|ref|YP_003129338.1|	-	0.13	12.2	0.0	0.3	11.0	0.0	1.6	1	1	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
NUDIX	PF00293.28	gi|257051506|ref|YP_003129339.1|	-	4.7e-15	55.8	0.2	5.8e-15	55.5	0.2	1.1	1	0	0	1	1	1	1	NUDIX	domain
HMA	PF00403.26	gi|257051507|ref|YP_003129340.1|	-	2.5e-18	66.3	0.4	2.7e-18	66.2	0.4	1.0	1	0	0	1	1	1	1	Heavy-metal-associated	domain
SCVP	PF17619.2	gi|257051507|ref|YP_003129340.1|	-	0.038	14.9	0.1	0.044	14.6	0.1	1.1	1	0	0	1	1	1	0	Secreted	clade	V	proteins
Thioredoxin_3	PF13192.6	gi|257051507|ref|YP_003129340.1|	-	0.078	13.0	0.4	0.11	12.6	0.4	1.3	1	1	0	1	1	1	0	Thioredoxin	domain
HisKA_7TM	PF16927.5	gi|257051508|ref|YP_003129341.1|	-	1.9e-47	162.1	19.9	2.5e-47	161.7	19.9	1.1	1	0	0	1	1	1	1	N-terminal	7TM	region	of	histidine	kinase
HATPase_c_2	PF13581.6	gi|257051508|ref|YP_003129341.1|	-	2e-11	43.9	0.1	4.1e-11	42.9	0.1	1.5	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HATPase_c	PF02518.26	gi|257051508|ref|YP_003129341.1|	-	3.2e-11	43.7	0.1	6.4e-11	42.7	0.1	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS	PF00989.25	gi|257051508|ref|YP_003129341.1|	-	3.2e-05	23.9	0.0	8e-05	22.6	0.0	1.7	1	0	0	1	1	1	1	PAS	fold
HisKA_4TM	PF16926.5	gi|257051508|ref|YP_003129341.1|	-	0.00012	21.7	0.2	0.00012	21.7	0.2	2.7	3	0	0	3	3	3	1	Archaeal	4TM	region	of	histidine	kinase
PAS_4	PF08448.10	gi|257051508|ref|YP_003129341.1|	-	0.00021	21.5	1.6	0.0026	18.0	0.5	3.0	2	1	0	2	2	2	1	PAS	fold
PAS_9	PF13426.7	gi|257051508|ref|YP_003129341.1|	-	0.0021	18.3	0.0	0.0054	17.0	0.0	1.8	1	1	0	1	1	1	1	PAS	domain
PAS_8	PF13188.7	gi|257051508|ref|YP_003129341.1|	-	0.014	15.4	0.1	0.047	13.7	0.1	1.9	1	0	0	1	1	1	0	PAS	domain
HATPase_c_5	PF14501.6	gi|257051508|ref|YP_003129341.1|	-	0.029	14.3	0.0	0.047	13.6	0.0	1.3	1	0	0	1	1	1	0	GHKL	domain
HisKA	PF00512.25	gi|257051508|ref|YP_003129341.1|	-	0.057	13.5	0.1	0.15	12.1	0.1	1.8	1	0	0	1	1	1	0	His	Kinase	A	(phospho-acceptor)	domain
Myosin_N	PF02736.19	gi|257051508|ref|YP_003129341.1|	-	0.079	12.8	2.1	0.095	12.5	0.8	1.8	2	0	0	2	2	2	0	Myosin	N-terminal	SH3-like	domain
MerE	PF05052.12	gi|257051509|ref|YP_003129342.1|	-	0.11	12.4	1.6	0.15	12.0	1.6	1.3	1	1	0	1	1	1	0	MerE	protein
Lactamase_B	PF00753.27	gi|257051511|ref|YP_003129344.1|	-	2.3e-28	99.5	2.3	2.9e-28	99.2	2.3	1.1	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_5	PF14597.6	gi|257051511|ref|YP_003129344.1|	-	4.9e-08	32.7	0.0	1.4e-07	31.2	0.0	1.7	2	0	0	2	2	2	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|257051511|ref|YP_003129344.1|	-	7.6e-05	22.3	0.3	9.9e-05	21.9	0.3	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
TrkA_N	PF02254.18	gi|257051512|ref|YP_003129345.1|	-	0.0013	19.0	0.8	0.0015	18.8	0.8	1.2	1	0	0	1	1	1	1	TrkA-N	domain
GMP_synt_C	PF00958.22	gi|257051513|ref|YP_003129346.1|	-	3.3e-30	104.0	0.3	3.1e-29	100.9	0.1	2.2	2	0	0	2	2	2	1	GMP	synthase	C	terminal	domain
NAD_synthase	PF02540.17	gi|257051513|ref|YP_003129346.1|	-	5e-08	32.3	0.0	4.8e-05	22.6	0.0	2.2	2	0	0	2	2	2	2	NAD	synthase
tRNA_Me_trans	PF03054.16	gi|257051513|ref|YP_003129346.1|	-	0.00015	20.7	0.0	0.0044	15.9	0.0	2.2	2	0	0	2	2	2	1	tRNA	methyl	transferase
QueC	PF06508.13	gi|257051513|ref|YP_003129346.1|	-	0.0021	17.6	0.0	0.01	15.3	0.0	2.0	1	1	0	2	2	2	1	Queuosine	biosynthesis	protein	QueC
ThiI	PF02568.14	gi|257051513|ref|YP_003129346.1|	-	0.043	13.4	0.0	0.14	11.7	0.0	1.7	1	1	0	1	1	1	0	Thiamine	biosynthesis	protein	(ThiI)
Asn_synthase	PF00733.21	gi|257051513|ref|YP_003129346.1|	-	0.068	12.8	0.0	0.11	12.1	0.0	1.3	1	0	0	1	1	1	0	Asparagine	synthase
PGBA_C	PF15437.6	gi|257051513|ref|YP_003129346.1|	-	0.63	10.4	1.9	0.7	10.3	0.1	1.9	2	0	0	2	2	2	0	Plasminogen-binding	protein	pgbA	C-terminal
CTP_synth_N	PF06418.14	gi|257051514|ref|YP_003129347.1|	-	1.8e-124	414.3	0.1	2.3e-124	414.0	0.1	1.1	1	0	0	1	1	1	1	CTP	synthase	N-terminus
GATase	PF00117.28	gi|257051514|ref|YP_003129347.1|	-	6.3e-53	179.4	0.0	1e-52	178.7	0.0	1.3	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
CbiA	PF01656.23	gi|257051514|ref|YP_003129347.1|	-	0.0005	20.1	0.0	0.00087	19.3	0.0	1.8	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
Peptidase_C26	PF07722.13	gi|257051514|ref|YP_003129347.1|	-	0.0025	17.6	0.0	0.0082	15.9	0.0	1.9	1	1	0	1	1	1	1	Peptidase	C26
BAT	PF15915.5	gi|257051515|ref|YP_003129348.1|	-	1.1	9.1	7.2	1.4	8.8	1.1	3.4	3	2	0	3	3	3	0	GAF	and	HTH_10	associated	domain
PspA_IM30	PF04012.12	gi|257051516|ref|YP_003129349.1|	-	3.5e-31	108.5	30.5	4.8e-31	108.0	30.5	1.2	1	0	0	1	1	1	1	PspA/IM30	family
Snf7	PF03357.21	gi|257051516|ref|YP_003129349.1|	-	0.00057	19.5	15.2	0.00057	19.5	15.2	4.0	1	1	2	3	3	3	1	Snf7
YabA	PF06156.13	gi|257051516|ref|YP_003129349.1|	-	0.0011	19.6	21.3	0.026	15.1	2.9	3.3	1	1	2	3	3	3	2	Initiation	control	protein	YabA
Spc7	PF08317.11	gi|257051516|ref|YP_003129349.1|	-	0.0034	16.3	23.8	0.0034	16.3	23.8	2.5	1	1	1	2	2	2	2	Spc7	kinetochore	protein
ERM	PF00769.19	gi|257051516|ref|YP_003129349.1|	-	0.0087	15.9	38.0	0.0045	16.8	36.5	1.4	1	1	0	1	1	1	1	Ezrin/radixin/moesin	family
APG6_N	PF17675.1	gi|257051516|ref|YP_003129349.1|	-	0.01	16.3	11.0	0.01	16.3	11.0	4.3	1	1	2	3	3	2	0	Apg6	coiled-coil	region
DUF3535	PF12054.8	gi|257051516|ref|YP_003129349.1|	-	0.056	12.7	6.7	0.084	12.1	6.7	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3535)
FAM184	PF15665.5	gi|257051516|ref|YP_003129349.1|	-	0.17	11.6	34.9	2.3	8.0	24.1	2.3	1	1	1	2	2	2	0	Family	with	sequence	similarity	184,	A	and	B
Prominin	PF05478.11	gi|257051516|ref|YP_003129349.1|	-	0.53	8.2	9.9	0.74	7.7	9.9	1.3	1	0	0	1	1	1	0	Prominin
FTA4	PF13093.6	gi|257051516|ref|YP_003129349.1|	-	0.71	9.7	23.9	25	4.7	17.2	3.1	1	1	1	2	2	2	0	Kinetochore	complex	Fta4	of	Sim4	subunit,	or	CENP-50
DUF3450	PF11932.8	gi|257051516|ref|YP_003129349.1|	-	1.2	8.4	30.7	0.14	11.5	5.9	3.1	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF3450)
DUF1664	PF07889.12	gi|257051516|ref|YP_003129349.1|	-	1.9	8.5	18.8	2.2	8.3	6.6	3.3	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF1664)
DUF3584	PF12128.8	gi|257051516|ref|YP_003129349.1|	-	1.9	5.9	38.9	4.6	4.6	38.9	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
YlqD	PF11068.8	gi|257051516|ref|YP_003129349.1|	-	2	8.8	31.0	0.88	9.9	14.1	3.0	1	1	2	3	3	3	0	YlqD	protein
SHE3	PF17078.5	gi|257051516|ref|YP_003129349.1|	-	2.5	7.8	23.0	2.9	7.5	17.5	2.9	1	1	1	3	3	3	0	SWI5-dependent	HO	expression	protein	3
NPV_P10	PF05531.12	gi|257051516|ref|YP_003129349.1|	-	2.6	8.6	13.3	26	5.4	3.1	4.0	2	1	1	3	3	3	0	Nucleopolyhedrovirus	P10	protein
COG5	PF10392.9	gi|257051516|ref|YP_003129349.1|	-	3.2	8.0	13.4	4.7	7.4	7.8	2.8	1	1	2	3	3	3	0	Golgi	transport	complex	subunit	5
FapA	PF03961.13	gi|257051516|ref|YP_003129349.1|	-	3.5	6.1	21.6	0.66	8.5	9.4	2.5	1	1	2	3	3	3	0	Flagellar	Assembly	Protein	A
CENP-F_leu_zip	PF10473.9	gi|257051516|ref|YP_003129349.1|	-	4.6	7.3	34.0	5.5	7.0	14.7	3.5	1	1	2	3	3	3	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
DUF948	PF06103.11	gi|257051516|ref|YP_003129349.1|	-	4.9	7.5	12.0	2.4	8.5	2.9	3.5	1	1	1	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF948)
DUF5082	PF16888.5	gi|257051516|ref|YP_003129349.1|	-	5.4	7.3	24.3	3.2	8.0	10.5	3.4	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF5082)
DUF4200	PF13863.6	gi|257051516|ref|YP_003129349.1|	-	6	7.3	34.4	3.6	8.0	3.8	3.7	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4200)
Exonuc_VII_L	PF02601.15	gi|257051516|ref|YP_003129349.1|	-	6.8	6.2	22.6	38	3.7	22.7	1.9	1	1	0	1	1	1	0	Exonuclease	VII,	large	subunit
ALMT	PF11744.8	gi|257051516|ref|YP_003129349.1|	-	8.4	5.1	11.5	10	4.8	11.5	1.2	1	0	0	1	1	1	0	Aluminium	activated	malate	transporter
SlyX	PF04102.12	gi|257051516|ref|YP_003129349.1|	-	8.9	7.0	27.3	0.81	10.4	7.2	4.0	2	1	2	4	4	4	0	SlyX
DUF2892	PF11127.8	gi|257051517|ref|YP_003129350.1|	-	1.5e-15	57.0	1.8	2.2e-15	56.4	1.8	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2892)
tRNA-Thr_ED	PF08915.11	gi|257051518|ref|YP_003129351.1|	-	2.8e-49	166.7	0.0	6.3e-49	165.6	0.0	1.6	1	0	0	1	1	1	1	Archaea-specific	editing	domain	of	threonyl-tRNA	synthetase
HGTP_anticodon	PF03129.20	gi|257051518|ref|YP_003129351.1|	-	2.6e-19	69.2	0.4	8.3e-19	67.5	0.1	2.1	2	0	0	2	2	2	1	Anticodon	binding	domain
tRNA-synt_2b	PF00587.25	gi|257051518|ref|YP_003129351.1|	-	1.1e-16	61.4	0.1	1.7e-16	60.7	0.1	1.3	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
Usp	PF00582.26	gi|257051519|ref|YP_003129352.1|	-	5.2e-34	117.8	0.4	5.8e-34	117.6	0.4	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
Toprim_3	PF13362.6	gi|257051519|ref|YP_003129352.1|	-	0.0011	19.3	1.1	0.0026	18.1	1.2	1.7	1	1	1	2	2	2	1	Toprim	domain
Ribosomal_S21	PF01165.20	gi|257051519|ref|YP_003129352.1|	-	0.21	11.4	0.0	0.33	10.7	0.0	1.3	1	0	0	1	1	1	0	Ribosomal	protein	S21
AIRS_C	PF02769.22	gi|257051520|ref|YP_003129353.1|	-	3.1e-21	76.1	0.0	5.5e-21	75.3	0.0	1.4	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.24	gi|257051520|ref|YP_003129353.1|	-	2.6e-12	47.2	3.5	5.5e-12	46.2	3.5	1.5	1	0	0	1	1	1	1	AIR	synthase	related	protein,	N-terminal	domain
Acetyltransf_9	PF13527.7	gi|257051521|ref|YP_003129354.1|	-	2.1e-22	79.6	0.6	7.3e-22	77.8	0.0	2.1	3	0	0	3	3	3	1	Acetyltransferase	(GNAT)	domain
SCP2_2	PF13530.6	gi|257051521|ref|YP_003129354.1|	-	4.3e-22	78.5	0.0	6.9e-22	77.8	0.0	1.3	1	0	0	1	1	1	1	Sterol	carrier	protein	domain
Acetyltransf_17	PF17668.1	gi|257051521|ref|YP_003129354.1|	-	5.7e-22	78.7	2.4	1.4e-21	77.5	2.4	1.7	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
MetallophosC	PF16370.5	gi|257051521|ref|YP_003129354.1|	-	0.02	15.2	0.1	0.031	14.5	0.1	1.2	1	0	0	1	1	1	0	C	terminal	of	Calcineurin-like	phosphoesterase
Peptidase_M50	PF02163.22	gi|257051522|ref|YP_003129355.1|	-	1.5e-05	24.4	11.4	0.018	14.3	0.3	3.1	1	1	1	2	2	2	2	Peptidase	family	M50
ABC2_membrane_5	PF13346.6	gi|257051522|ref|YP_003129355.1|	-	0.36	10.3	3.4	0.31	10.6	1.3	1.8	2	0	0	2	2	2	0	ABC-2	family	transporter	protein
DUF3267	PF11667.8	gi|257051522|ref|YP_003129355.1|	-	3.6	7.9	7.8	0.73	10.2	3.1	2.3	2	1	0	2	2	2	0	Putative	zincin	peptidase
TraB	PF01963.17	gi|257051523|ref|YP_003129356.1|	-	7e-32	111.4	0.0	1e-19	71.5	0.0	2.2	2	0	0	2	2	2	2	TraB	family
DUF4407	PF14362.6	gi|257051523|ref|YP_003129356.1|	-	0.037	13.4	0.2	0.081	12.3	0.2	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
Trimer_CC	PF08954.11	gi|257051523|ref|YP_003129356.1|	-	0.31	10.6	1.2	3.2	7.4	0.1	2.5	2	0	0	2	2	2	0	Trimerisation	motif
Methyltransf_11	PF08241.12	gi|257051524|ref|YP_003129357.1|	-	1.5e-12	47.9	0.0	2.7e-12	47.2	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|257051524|ref|YP_003129357.1|	-	3.3e-11	43.7	0.0	6.6e-11	42.8	0.0	1.5	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|257051524|ref|YP_003129357.1|	-	0.00057	19.8	0.0	0.00094	19.1	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|257051524|ref|YP_003129357.1|	-	0.0049	16.7	0.0	1	9.1	0.0	2.1	2	0	0	2	2	2	2	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|257051524|ref|YP_003129357.1|	-	0.0067	15.8	0.0	0.0089	15.4	0.0	1.2	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_12	PF08242.12	gi|257051524|ref|YP_003129357.1|	-	0.031	15.0	0.0	0.085	13.6	0.0	1.8	1	1	0	1	1	1	0	Methyltransferase	domain
Methyltransf_2	PF00891.18	gi|257051524|ref|YP_003129357.1|	-	0.068	12.5	0.0	0.12	11.6	0.0	1.5	1	1	0	1	1	1	0	O-methyltransferase	domain
RrnaAD	PF00398.20	gi|257051524|ref|YP_003129357.1|	-	0.073	12.1	0.0	0.1	11.6	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
FtsJ	PF01728.19	gi|257051524|ref|YP_003129357.1|	-	0.15	12.1	0.0	0.18	11.9	0.0	1.2	1	0	0	1	1	1	0	FtsJ-like	methyltransferase
ATP-grasp_2	PF08442.10	gi|257051525|ref|YP_003129358.1|	-	7e-64	215.1	0.2	1.2e-63	214.4	0.2	1.4	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_5	PF13549.6	gi|257051525|ref|YP_003129358.1|	-	2.2e-20	73.1	2.0	4e-20	72.2	1.0	1.8	2	0	0	2	2	2	1	ATP-grasp	domain
CPSase_L_D2	PF02786.17	gi|257051525|ref|YP_003129358.1|	-	1.8e-13	50.5	2.5	1.3e-10	41.1	0.4	2.8	3	0	0	3	3	3	2	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
Ligase_CoA	PF00549.19	gi|257051525|ref|YP_003129358.1|	-	2.9e-11	43.4	0.5	6.8e-11	42.2	0.5	1.5	1	0	0	1	1	1	1	CoA-ligase
ATP-grasp	PF02222.22	gi|257051525|ref|YP_003129358.1|	-	1.9e-06	27.6	0.0	3.6e-06	26.6	0.0	1.4	1	0	0	1	1	1	1	ATP-grasp	domain
GARS_A	PF01071.19	gi|257051525|ref|YP_003129358.1|	-	2.1e-05	24.4	0.2	3.8e-05	23.5	0.2	1.4	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
RimK	PF08443.11	gi|257051525|ref|YP_003129358.1|	-	0.057	13.0	0.0	0.1	12.2	0.0	1.4	1	0	0	1	1	1	0	RimK-like	ATP-grasp	domain
YbaB_DNA_bd	PF02575.16	gi|257051525|ref|YP_003129358.1|	-	0.55	10.5	5.5	0.1	12.8	0.6	2.4	3	0	0	3	3	3	0	YbaB/EbfC	DNA-binding	family
CoA_binding	PF02629.19	gi|257051526|ref|YP_003129359.1|	-	6.7e-25	87.6	0.5	6.7e-25	87.6	0.5	1.9	2	0	0	2	2	2	1	CoA	binding	domain
Ligase_CoA	PF00549.19	gi|257051526|ref|YP_003129359.1|	-	5.2e-15	55.6	1.5	5.2e-15	55.6	1.5	1.9	2	0	0	2	2	2	1	CoA-ligase
Succ_CoA_lig	PF13607.6	gi|257051526|ref|YP_003129359.1|	-	1.2e-10	41.3	0.1	2.3e-10	40.4	0.1	1.4	1	0	0	1	1	1	1	Succinyl-CoA	ligase	like	flavodoxin	domain
CoA_binding_2	PF13380.6	gi|257051526|ref|YP_003129359.1|	-	2.7e-07	31.1	0.2	1.3e-06	28.9	0.1	2.1	2	1	0	2	2	2	1	CoA	binding	domain
GFO_IDH_MocA	PF01408.22	gi|257051526|ref|YP_003129359.1|	-	0.027	15.3	0.3	0.28	12.0	0.2	2.5	2	1	0	2	2	2	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Peptidase_C41	PF05417.11	gi|257051526|ref|YP_003129359.1|	-	0.07	13.0	1.0	0.12	12.2	0.3	1.7	2	0	0	2	2	2	0	Hepatitis	E	cysteine	protease
SDA1	PF05285.12	gi|257051527|ref|YP_003129360.1|	-	1.8	7.9	10.9	1.9	7.8	10.9	1.2	1	0	0	1	1	1	0	SDA1
Lar_restr_allev	PF14354.6	gi|257051528|ref|YP_003129361.1|	-	0.0049	17.2	0.4	0.008	16.5	0.4	1.4	1	0	0	1	1	1	1	Restriction	alleviation	protein	Lar
Nudix_N_2	PF14803.6	gi|257051528|ref|YP_003129361.1|	-	0.018	14.9	0.8	0.04	13.8	0.8	1.5	1	0	0	1	1	1	0	Nudix	N-terminal
TF_Zn_Ribbon	PF08271.12	gi|257051528|ref|YP_003129361.1|	-	0.033	13.7	2.1	0.069	12.7	2.1	1.6	1	0	0	1	1	1	0	TFIIB	zinc-binding
zf-TFIIB	PF13453.6	gi|257051528|ref|YP_003129361.1|	-	0.041	13.2	0.7	0.084	12.2	0.7	1.5	1	0	0	1	1	1	0	Transcription	factor	zinc-finger
Ribosomal_S27e	PF01667.17	gi|257051528|ref|YP_003129361.1|	-	0.048	13.4	0.5	0.071	12.8	0.5	1.3	1	0	0	1	1	1	0	Ribosomal	protein	S27
Zn-ribbon_8	PF09723.10	gi|257051528|ref|YP_003129361.1|	-	0.13	12.4	1.8	0.4	10.8	1.8	1.9	1	1	0	1	1	1	0	Zinc	ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|257051528|ref|YP_003129361.1|	-	0.15	12.0	0.5	0.23	11.4	0.5	1.3	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zf-piccolo	PF05715.13	gi|257051528|ref|YP_003129361.1|	-	0.16	12.2	0.7	0.27	11.4	0.1	1.7	2	0	0	2	2	2	0	Piccolo	Zn-finger
zf-ribbon_3	PF13248.6	gi|257051528|ref|YP_003129361.1|	-	0.17	11.4	2.0	10	5.7	0.3	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-C4_Topoisom	PF01396.19	gi|257051528|ref|YP_003129361.1|	-	0.27	11.1	1.5	1.8	8.4	0.2	2.1	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
zinc_ribbon_2	PF13240.6	gi|257051528|ref|YP_003129361.1|	-	0.96	9.3	4.1	12	5.7	0.2	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
FtsA	PF14450.6	gi|257051529|ref|YP_003129362.1|	-	0.012	16.0	0.0	0.04	14.3	0.0	1.8	2	0	0	2	2	2	0	Cell	division	protein	FtsA
Actin	PF00022.19	gi|257051529|ref|YP_003129362.1|	-	0.091	11.3	0.0	0.87	8.1	0.0	2.0	2	0	0	2	2	2	0	Actin
Phage_holin_3_6	PF07332.11	gi|257051530|ref|YP_003129363.1|	-	4.7	7.3	14.1	4.6e+02	0.9	14.1	2.3	1	1	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
GDPD	PF03009.17	gi|257051531|ref|YP_003129364.1|	-	7.9e-29	101.2	0.1	7.8e-20	71.7	0.0	2.0	1	1	1	2	2	2	2	Glycerophosphoryl	diester	phosphodiesterase	family
EI24	PF07264.11	gi|257051532|ref|YP_003129365.1|	-	0.036	14.3	12.3	0.06	13.6	12.3	1.3	1	0	0	1	1	1	0	Etoposide-induced	protein	2.4	(EI24)
Tetraspanin	PF00335.20	gi|257051532|ref|YP_003129365.1|	-	4	7.1	16.7	0.073	12.8	4.9	2.5	2	1	1	3	3	3	0	Tetraspanin	family
Pkinase	PF00069.25	gi|257051533|ref|YP_003129366.1|	-	2e-09	37.2	0.0	2.6e-09	36.8	0.0	1.2	1	0	0	1	1	1	1	Protein	kinase	domain
Pkinase_Tyr	PF07714.17	gi|257051533|ref|YP_003129366.1|	-	0.02	14.2	0.0	0.041	13.2	0.0	1.4	1	1	0	1	1	1	0	Protein	tyrosine	kinase
HEAT	PF02985.22	gi|257051533|ref|YP_003129366.1|	-	0.021	15.0	0.2	0.05	13.9	0.2	1.6	1	0	0	1	1	1	0	HEAT	repeat
HEAT_2	PF13646.6	gi|257051533|ref|YP_003129366.1|	-	0.027	14.8	0.2	0.057	13.8	0.2	1.5	1	0	0	1	1	1	0	HEAT	repeats
IFRD	PF05004.13	gi|257051533|ref|YP_003129366.1|	-	0.23	10.5	0.0	0.84	8.7	0.0	1.8	2	0	0	2	2	2	0	Interferon-related	developmental	regulator	(IFRD)
MCPsignal	PF00015.21	gi|257051534|ref|YP_003129367.1|	-	6.6e-39	133.5	54.0	2.7e-37	128.2	28.7	4.3	2	1	2	4	4	4	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
HAMP	PF00672.25	gi|257051534|ref|YP_003129367.1|	-	7.4e-13	48.7	19.8	8.2e-11	42.1	0.6	6.0	7	1	0	7	7	6	2	HAMP	domain
dCache_1	PF02743.18	gi|257051534|ref|YP_003129367.1|	-	5.9e-10	39.3	0.0	5.9e-10	39.3	0.0	4.1	2	1	1	4	4	4	1	Cache	domain
Prominin	PF05478.11	gi|257051534|ref|YP_003129367.1|	-	4.1e-06	25.1	10.6	7.9e-05	20.8	1.8	2.8	2	1	1	3	3	3	2	Prominin
DUF948	PF06103.11	gi|257051534|ref|YP_003129367.1|	-	0.00026	21.2	44.3	0.13	12.6	0.3	7.2	4	2	3	7	7	7	4	Bacterial	protein	of	unknown	function	(DUF948)
DUF1664	PF07889.12	gi|257051534|ref|YP_003129367.1|	-	0.0018	18.3	35.0	0.36	10.9	2.5	5.8	3	2	3	6	6	6	6	Protein	of	unknown	function	(DUF1664)
TMP_2	PF06791.13	gi|257051534|ref|YP_003129367.1|	-	0.0089	15.7	36.3	0.047	13.3	13.5	4.2	2	1	1	3	3	3	1	Prophage	tail	length	tape	measure	protein
Htr2	PF17909.1	gi|257051534|ref|YP_003129367.1|	-	0.019	15.3	1.6	0.019	15.3	1.6	3.9	4	0	0	4	4	3	0	Htr2	transmembrane	domain
Syntaxin-6_N	PF09177.11	gi|257051534|ref|YP_003129367.1|	-	0.21	12.2	32.3	0.82	10.3	3.4	5.0	4	2	1	5	5	5	0	Syntaxin	6,	N-terminal
KxDL	PF10241.9	gi|257051534|ref|YP_003129367.1|	-	0.28	11.5	11.0	6.4	7.1	0.0	4.9	2	2	3	5	5	5	0	Uncharacterized	conserved	protein
FliD_N	PF02465.18	gi|257051534|ref|YP_003129367.1|	-	0.86	10.3	21.1	0.12	13.0	0.4	5.6	2	1	2	4	4	3	0	Flagellar	hook-associated	protein	2	N-terminus
BLOC1_2	PF10046.9	gi|257051534|ref|YP_003129367.1|	-	1.7	9.0	29.9	0.97	9.8	1.0	6.7	3	3	3	6	6	6	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
ING	PF12998.7	gi|257051534|ref|YP_003129367.1|	-	3.5	8.3	14.0	0.23	12.0	2.1	3.9	3	2	2	5	5	5	0	Inhibitor	of	growth	proteins	N-terminal	histone-binding
YojJ	PF10372.9	gi|257051534|ref|YP_003129367.1|	-	9.4	6.4	5.7	3.3	7.9	0.1	3.1	3	0	0	3	3	3	0	Bacterial	membrane-spanning	protein	N-terminus
Bac_rhodopsin	PF01036.18	gi|257051535|ref|YP_003129368.1|	-	2e-44	151.8	20.0	2.2e-44	151.7	20.0	1.0	1	0	0	1	1	1	1	Bacteriorhodopsin-like	protein
3HCDH	PF00725.22	gi|257051536|ref|YP_003129369.1|	-	1.6e-20	73.5	0.0	5.1e-20	71.9	0.0	1.9	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	C-terminal	domain
3HCDH_N	PF02737.18	gi|257051536|ref|YP_003129369.1|	-	2.2e-14	53.8	0.0	4.6e-07	29.9	0.0	3.1	3	0	0	3	3	3	3	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
3HCDH_RFF	PF18321.1	gi|257051536|ref|YP_003129369.1|	-	0.012	16.1	0.0	0.036	14.5	0.0	1.9	1	0	0	1	1	1	0	3-hydroxybutyryl-CoA	dehydrogenase	reduced	Rossmann-fold	domain
Histidinol_dh	PF00815.20	gi|257051537|ref|YP_003129370.1|	-	5.8e-155	516.3	8.3	6.8e-155	516.1	8.3	1.0	1	0	0	1	1	1	1	Histidinol	dehydrogenase
DUF5130	PF17174.4	gi|257051537|ref|YP_003129370.1|	-	7.5	6.8	8.8	3.8	7.7	1.8	2.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF5130)
HTH_20	PF12840.7	gi|257051538|ref|YP_003129371.1|	-	4.8e-14	52.1	0.0	8.9e-14	51.3	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|257051538|ref|YP_003129371.1|	-	1.8e-06	27.4	0.0	3.7e-06	26.4	0.0	1.6	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|257051538|ref|YP_003129371.1|	-	1.3e-05	24.9	0.0	2.9e-05	23.9	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.6	gi|257051538|ref|YP_003129371.1|	-	0.082	13.4	0.0	0.18	12.4	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF2513	PF10711.9	gi|257051538|ref|YP_003129371.1|	-	0.086	13.1	0.0	0.13	12.6	0.0	1.3	1	0	0	1	1	1	0	Hypothetical	protein	(DUF2513)
HTH_5	PF01022.20	gi|257051538|ref|YP_003129371.1|	-	0.16	11.8	0.0	0.27	11.1	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
DnaJ	PF00226.31	gi|257051539|ref|YP_003129372.1|	-	5.5e-12	45.6	0.1	8.5e-12	45.0	0.1	1.3	1	0	0	1	1	1	1	DnaJ	domain
Fer2	PF00111.27	gi|257051539|ref|YP_003129372.1|	-	2.4e-10	40.2	0.2	4.6e-10	39.3	0.2	1.4	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
RPT	PF13446.6	gi|257051539|ref|YP_003129372.1|	-	0.039	13.9	0.0	0.16	11.9	0.0	1.9	1	1	1	2	2	2	0	A	repeated	domain	in	UCH-protein
Lar_N	PF09861.9	gi|257051540|ref|YP_003129373.1|	-	2.2e-36	124.9	0.0	4.7e-36	123.9	0.0	1.5	2	0	0	2	2	2	1	Lactate	racemase	N-terminal	domain
DUF362	PF04015.12	gi|257051540|ref|YP_003129373.1|	-	0.0029	17.9	0.0	0.0042	17.4	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF362)
AP_endonuc_2	PF01261.24	gi|257051541|ref|YP_003129374.1|	-	1.7e-10	40.7	1.1	2.6e-06	27.1	0.1	2.1	1	1	1	2	2	2	2	Xylose	isomerase-like	TIM	barrel
AAA_12	PF13087.6	gi|257051542|ref|YP_003129375.1|	-	3.2e-38	131.4	0.0	4.8e-38	130.8	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_11	PF13086.6	gi|257051542|ref|YP_003129375.1|	-	1.1e-36	127.0	0.1	2.5e-18	66.8	0.2	2.6	1	1	1	2	2	2	2	AAA	domain
Dna2	PF08696.11	gi|257051542|ref|YP_003129375.1|	-	1.6e-20	73.8	0.0	5.2e-20	72.1	0.0	1.9	2	1	0	2	2	2	1	DNA	replication	factor	Dna2
AAA_30	PF13604.6	gi|257051542|ref|YP_003129375.1|	-	4.7e-18	65.6	3.9	2e-17	63.6	2.6	2.7	2	1	0	2	2	2	1	AAA	domain
AAA_19	PF13245.6	gi|257051542|ref|YP_003129375.1|	-	9.8e-14	51.9	0.1	4.2e-13	49.9	0.1	2.1	2	0	0	2	2	2	1	AAA	domain
PDDEXK_1	PF12705.7	gi|257051542|ref|YP_003129375.1|	-	5.8e-13	49.4	0.4	5.2e-12	46.2	0.0	2.5	3	0	0	3	3	3	1	PD-(D/E)XK	nuclease	superfamily
Viral_helicase1	PF01443.18	gi|257051542|ref|YP_003129375.1|	-	2e-07	31.0	0.0	0.0088	15.8	0.0	3.2	3	0	0	3	3	3	1	Viral	(Superfamily	1)	RNA	helicase
AAA_22	PF13401.6	gi|257051542|ref|YP_003129375.1|	-	9.4e-06	25.9	0.1	0.00059	20.1	0.0	3.1	3	1	0	3	3	2	1	AAA	domain
AAA_16	PF13191.6	gi|257051542|ref|YP_003129375.1|	-	0.00013	22.4	2.2	0.00063	20.2	1.9	2.3	1	1	0	1	1	1	1	AAA	ATPase	domain
ResIII	PF04851.15	gi|257051542|ref|YP_003129375.1|	-	0.00025	21.1	0.0	0.00045	20.3	0.0	1.4	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
UvrD-helicase	PF00580.21	gi|257051542|ref|YP_003129375.1|	-	0.00026	20.6	0.0	0.0007	19.2	0.0	1.5	1	1	0	1	1	1	1	UvrD/REP	helicase	N-terminal	domain
UvrD_C_2	PF13538.6	gi|257051542|ref|YP_003129375.1|	-	0.00054	19.7	0.0	0.0013	18.6	0.0	1.7	1	0	0	1	1	1	1	UvrD-like	helicase	C-terminal	domain
Helicase_RecD	PF05127.14	gi|257051542|ref|YP_003129375.1|	-	0.0013	18.6	0.1	0.0048	16.8	0.1	2.0	1	1	0	1	1	1	1	Helicase
T2SSE	PF00437.20	gi|257051542|ref|YP_003129375.1|	-	0.0025	16.9	0.0	0.0046	16.0	0.0	1.5	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
DUF2075	PF09848.9	gi|257051542|ref|YP_003129375.1|	-	0.0045	16.3	1.0	0.014	14.7	0.0	2.2	2	1	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2075)
AAA_25	PF13481.6	gi|257051542|ref|YP_003129375.1|	-	0.0048	16.5	0.1	0.025	14.2	0.0	2.4	2	0	0	2	2	1	1	AAA	domain
PIF1	PF05970.14	gi|257051542|ref|YP_003129375.1|	-	0.0057	15.9	0.0	0.11	11.7	0.0	2.1	2	0	0	2	2	2	1	PIF1-like	helicase
AAA_24	PF13479.6	gi|257051542|ref|YP_003129375.1|	-	0.0085	15.8	0.0	0.018	14.8	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
SRP54	PF00448.22	gi|257051542|ref|YP_003129375.1|	-	0.013	15.1	0.1	0.14	11.7	0.0	2.3	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
AAA	PF00004.29	gi|257051542|ref|YP_003129375.1|	-	0.015	15.7	0.1	0.045	14.2	0.0	1.8	2	0	0	2	2	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
IstB_IS21	PF01695.17	gi|257051542|ref|YP_003129375.1|	-	0.037	13.8	0.0	0.1	12.3	0.0	1.7	2	0	0	2	2	1	0	IstB-like	ATP	binding	protein
TrwB_AAD_bind	PF10412.9	gi|257051542|ref|YP_003129375.1|	-	0.042	12.8	0.0	0.074	11.9	0.0	1.3	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
cobW	PF02492.19	gi|257051542|ref|YP_003129375.1|	-	0.043	13.4	0.3	6.4	6.3	0.1	3.4	3	1	0	3	3	3	0	CobW/HypB/UreG,	nucleotide-binding	domain
CbiA	PF01656.23	gi|257051542|ref|YP_003129375.1|	-	0.05	13.7	0.1	0.16	12.0	0.1	1.8	1	1	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
PhoH	PF02562.16	gi|257051542|ref|YP_003129375.1|	-	0.056	12.9	0.0	0.2	11.1	0.0	1.9	2	0	0	2	2	2	0	PhoH-like	protein
Cas_Cas4	PF01930.17	gi|257051542|ref|YP_003129375.1|	-	0.067	13.3	0.0	0.53	10.4	0.0	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	DUF83
AAA_7	PF12775.7	gi|257051542|ref|YP_003129375.1|	-	0.11	12.0	0.0	0.2	11.2	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_5	PF07728.14	gi|257051542|ref|YP_003129375.1|	-	0.13	12.2	0.0	0.43	10.6	0.0	1.8	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
NACHT	PF05729.12	gi|257051542|ref|YP_003129375.1|	-	0.13	12.1	0.0	0.7	9.8	0.0	2.0	2	0	0	2	2	2	0	NACHT	domain
RuvB_N	PF05496.12	gi|257051542|ref|YP_003129375.1|	-	0.16	11.7	0.0	0.36	10.6	0.0	1.6	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
Cadherin	PF00028.17	gi|257051544|ref|YP_003129377.1|	-	0.07	13.6	0.1	0.29	11.6	0.0	2.0	2	0	0	2	2	2	0	Cadherin	domain
Trypan_PARP	PF05887.11	gi|257051544|ref|YP_003129377.1|	-	0.2	11.6	11.4	0.53	10.3	4.0	2.3	2	0	0	2	2	2	0	Procyclic	acidic	repetitive	protein	(PARP)
MutS_V	PF00488.21	gi|257051545|ref|YP_003129378.1|	-	1.3e-77	260.1	0.3	2.4e-77	259.2	0.3	1.4	1	0	0	1	1	1	1	MutS	domain	V
MutS_III	PF05192.18	gi|257051545|ref|YP_003129378.1|	-	4.3e-37	128.2	2.5	9.7e-37	127.1	2.5	1.6	1	0	0	1	1	1	1	MutS	domain	III
MutS_I	PF01624.20	gi|257051545|ref|YP_003129378.1|	-	1.4e-35	122.0	0.0	5.7e-35	120.0	0.0	2.0	2	0	0	2	2	2	1	MutS	domain	I
MutS_IV	PF05190.18	gi|257051545|ref|YP_003129378.1|	-	2.9e-32	110.9	0.5	6.2e-32	109.8	0.5	1.6	1	0	0	1	1	1	1	MutS	family	domain	IV
MutS_II	PF05188.17	gi|257051545|ref|YP_003129378.1|	-	2.1e-16	60.5	0.0	1.2e-15	58.0	0.0	2.3	2	0	0	2	2	2	1	MutS	domain	II
LD_cluster3	PF18180.1	gi|257051545|ref|YP_003129378.1|	-	0.12	12.0	0.0	0.73	9.4	0.0	2.1	2	0	0	2	2	2	0	SLOG	cluster3	family
NPV_P10	PF05531.12	gi|257051545|ref|YP_003129378.1|	-	1.4	9.4	4.1	35	4.9	0.5	3.2	2	1	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
Thioredoxin	PF00085.20	gi|257051546|ref|YP_003129379.1|	-	5.6e-12	45.6	0.0	6.5e-12	45.3	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.6	gi|257051546|ref|YP_003129379.1|	-	0.00014	22.3	0.0	0.00031	21.2	0.0	1.6	1	1	0	1	1	1	1	Thioredoxin-like	domain
TraF	PF13728.6	gi|257051546|ref|YP_003129379.1|	-	0.0019	18.1	0.0	0.0046	16.8	0.0	1.6	1	1	0	1	1	1	1	F	plasmid	transfer	operon	protein
DUF836	PF05768.14	gi|257051546|ref|YP_003129379.1|	-	0.018	15.4	0.0	0.022	15.2	0.0	1.2	1	0	0	1	1	1	0	Glutaredoxin-like	domain	(DUF836)
Thioredoxin_3	PF13192.6	gi|257051546|ref|YP_003129379.1|	-	0.12	12.4	0.0	0.17	12.0	0.0	1.3	1	0	0	1	1	1	0	Thioredoxin	domain
UPF0058	PF01893.16	gi|257051547|ref|YP_003129380.1|	-	3.9e-15	55.9	0.0	4.3e-15	55.8	0.0	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0058
DUF4395	PF14340.6	gi|257051548|ref|YP_003129381.1|	-	9.6	6.5	14.7	0.31	11.4	5.6	2.6	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4395)
NAD_binding_10	PF13460.6	gi|257051549|ref|YP_003129382.1|	-	1.2e-15	57.9	0.1	1.8e-15	57.3	0.1	1.4	1	0	0	1	1	1	1	NAD(P)H-binding
Epimerase	PF01370.21	gi|257051549|ref|YP_003129382.1|	-	9.7e-13	48.1	0.0	1.8e-11	43.9	0.0	2.2	1	1	1	2	2	2	1	NAD	dependent	epimerase/dehydratase	family
NmrA	PF05368.13	gi|257051549|ref|YP_003129382.1|	-	1.1e-10	41.4	0.0	1.6e-10	41.0	0.0	1.2	1	0	0	1	1	1	1	NmrA-like	family
RmlD_sub_bind	PF04321.17	gi|257051549|ref|YP_003129382.1|	-	7e-07	28.6	0.1	4.1e-05	22.8	0.0	2.2	2	0	0	2	2	2	1	RmlD	substrate	binding	domain
GDP_Man_Dehyd	PF16363.5	gi|257051549|ref|YP_003129382.1|	-	4.6e-05	23.0	0.0	0.00011	21.8	0.0	1.6	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
3Beta_HSD	PF01073.19	gi|257051549|ref|YP_003129382.1|	-	0.0091	15.0	0.0	0.022	13.7	0.0	1.6	1	1	1	2	2	2	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
TrkA_N	PF02254.18	gi|257051549|ref|YP_003129382.1|	-	0.012	15.9	0.4	0.57	10.5	0.0	2.7	3	1	0	3	3	3	0	TrkA-N	domain
Semialdhyde_dh	PF01118.24	gi|257051549|ref|YP_003129382.1|	-	0.015	15.7	0.2	0.43	11.0	0.0	2.9	2	1	1	3	3	3	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
NAD_binding_4	PF07993.12	gi|257051549|ref|YP_003129382.1|	-	0.079	12.1	0.0	0.16	11.1	0.0	1.5	1	0	0	1	1	1	0	Male	sterility	protein
DapB_N	PF01113.20	gi|257051549|ref|YP_003129382.1|	-	0.11	12.7	0.1	0.36	10.9	0.0	1.9	2	0	0	2	2	2	0	Dihydrodipicolinate	reductase,	N-terminus
adh_short	PF00106.25	gi|257051549|ref|YP_003129382.1|	-	0.17	11.3	0.0	0.3	10.5	0.0	1.3	1	0	0	1	1	1	0	short	chain	dehydrogenase
Ldh_1_N	PF00056.23	gi|257051550|ref|YP_003129383.1|	-	5.8e-44	149.6	0.1	9.1e-44	149.0	0.1	1.3	1	0	0	1	1	1	1	lactate/malate	dehydrogenase,	NAD	binding	domain
Ldh_1_C	PF02866.18	gi|257051550|ref|YP_003129383.1|	-	5.4e-34	117.5	0.0	7.9e-34	117.0	0.0	1.2	1	0	0	1	1	1	1	lactate/malate	dehydrogenase,	alpha/beta	C-terminal	domain
F420_oxidored	PF03807.17	gi|257051550|ref|YP_003129383.1|	-	3.7e-05	24.2	0.7	6.9e-05	23.4	0.4	1.7	1	1	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
UDPG_MGDP_dh_N	PF03721.14	gi|257051550|ref|YP_003129383.1|	-	0.0005	19.7	0.4	0.0029	17.2	0.1	2.1	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
ThiF	PF00899.21	gi|257051550|ref|YP_003129383.1|	-	0.0012	18.2	0.1	0.0024	17.3	0.1	1.4	1	0	0	1	1	1	1	ThiF	family
Sacchrp_dh_NADP	PF03435.18	gi|257051550|ref|YP_003129383.1|	-	0.0017	18.6	0.1	0.0036	17.5	0.1	1.6	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
TrkA_N	PF02254.18	gi|257051550|ref|YP_003129383.1|	-	0.0042	17.3	0.3	0.01	16.1	0.3	1.7	1	0	0	1	1	1	1	TrkA-N	domain
GFO_IDH_MocA	PF01408.22	gi|257051550|ref|YP_003129383.1|	-	0.0046	17.8	0.1	0.0077	17.1	0.1	1.3	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Semialdhyde_dh	PF01118.24	gi|257051550|ref|YP_003129383.1|	-	0.0052	17.2	0.0	0.092	13.2	0.1	2.2	2	0	0	2	2	2	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
DAO	PF01266.24	gi|257051550|ref|YP_003129383.1|	-	0.0054	16.4	1.9	0.0087	15.7	0.8	1.8	1	1	1	2	2	2	1	FAD	dependent	oxidoreductase
Shikimate_DH	PF01488.20	gi|257051550|ref|YP_003129383.1|	-	0.0056	16.8	0.0	0.012	15.6	0.0	1.5	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
OCD_Mu_crystall	PF02423.15	gi|257051550|ref|YP_003129383.1|	-	0.0077	15.2	0.1	0.012	14.5	0.1	1.2	1	0	0	1	1	1	1	Ornithine	cyclodeaminase/mu-crystallin	family
Glyco_hydro_4	PF02056.16	gi|257051550|ref|YP_003129383.1|	-	0.0099	15.4	0.9	1.7	8.1	0.4	2.5	1	1	1	2	2	2	1	Family	4	glycosyl	hydrolase
NAD_binding_7	PF13241.6	gi|257051550|ref|YP_003129383.1|	-	0.017	15.5	0.4	0.082	13.3	0.1	2.2	2	1	0	2	2	2	0	Putative	NAD(P)-binding
3HCDH_N	PF02737.18	gi|257051550|ref|YP_003129383.1|	-	0.025	14.4	1.6	0.074	12.9	1.6	1.8	1	1	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Thi4	PF01946.17	gi|257051550|ref|YP_003129383.1|	-	0.04	13.2	0.9	0.75	9.0	0.2	2.5	3	0	0	3	3	3	0	Thi4	family
ApbA	PF02558.16	gi|257051550|ref|YP_003129383.1|	-	0.066	12.9	0.0	0.18	11.4	0.1	1.7	2	0	0	2	2	2	0	Ketopantoate	reductase	PanE/ApbA
Radical_SAM	PF04055.21	gi|257051551|ref|YP_003129384.1|	-	1.9e-16	60.9	0.0	6.4e-16	59.2	0.0	1.8	2	0	0	2	2	2	1	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|257051551|ref|YP_003129384.1|	-	8.3e-05	22.9	0.1	0.0032	17.7	0.0	2.3	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
DNA_RNApol_7kD	PF03604.13	gi|257051551|ref|YP_003129384.1|	-	0.12	12.0	2.9	1.3	8.8	0.4	2.7	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zinc_ribbon_4	PF13717.6	gi|257051551|ref|YP_003129384.1|	-	4.8	7.2	8.1	11	6.0	0.5	2.7	3	0	0	3	3	3	0	zinc-ribbon	domain
AIRS_C	PF02769.22	gi|257051552|ref|YP_003129385.1|	-	9.3e-27	94.1	0.2	1.5e-26	93.4	0.2	1.3	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.24	gi|257051552|ref|YP_003129385.1|	-	7.4e-09	36.2	0.2	1.7e-08	35.0	0.2	1.6	1	0	0	1	1	1	1	AIR	synthase	related	protein,	N-terminal	domain
HTH_20	PF12840.7	gi|257051555|ref|YP_003129388.1|	-	4.1e-06	26.8	0.0	5.2e-06	26.4	0.0	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|257051555|ref|YP_003129388.1|	-	1.6e-05	24.7	0.0	2.8e-05	23.9	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_45	PF14947.6	gi|257051555|ref|YP_003129388.1|	-	0.00094	19.1	0.0	0.0011	18.9	0.0	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
TrmB	PF01978.19	gi|257051555|ref|YP_003129388.1|	-	0.0029	17.4	0.0	0.004	17.0	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_Crp_2	PF13545.6	gi|257051555|ref|YP_003129388.1|	-	0.0031	17.5	0.0	0.0058	16.6	0.0	1.5	1	1	0	1	1	1	1	Crp-like	helix-turn-helix	domain
DprA_WH	PF17782.1	gi|257051555|ref|YP_003129388.1|	-	0.0037	17.4	0.1	0.0051	16.9	0.1	1.3	1	0	0	1	1	1	1	DprA	winged	helix	domain
HTH_IclR	PF09339.10	gi|257051555|ref|YP_003129388.1|	-	0.0065	16.3	0.0	0.011	15.6	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HxlR	PF01638.17	gi|257051555|ref|YP_003129388.1|	-	0.024	14.5	0.0	0.03	14.2	0.0	1.1	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
HTH_1	PF00126.27	gi|257051555|ref|YP_003129388.1|	-	0.027	14.4	0.0	0.039	13.9	0.0	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
DUF1495	PF07381.11	gi|257051555|ref|YP_003129388.1|	-	0.028	14.3	0.0	0.078	12.8	0.0	1.7	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
MarR_2	PF12802.7	gi|257051555|ref|YP_003129388.1|	-	0.03	14.2	0.1	0.041	13.8	0.1	1.2	1	0	0	1	1	1	0	MarR	family
PadR	PF03551.14	gi|257051555|ref|YP_003129388.1|	-	0.055	13.4	0.0	0.093	12.7	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
Replic_Relax	PF13814.6	gi|257051555|ref|YP_003129388.1|	-	0.067	13.3	0.0	0.073	13.1	0.0	1.1	1	0	0	1	1	1	0	Replication-relaxation
Rrf2	PF02082.20	gi|257051555|ref|YP_003129388.1|	-	0.096	13.0	0.0	0.19	12.1	0.0	1.5	1	1	0	1	1	1	0	Transcriptional	regulator
PolyA_pol_RNAbd	PF12627.7	gi|257051555|ref|YP_003129388.1|	-	0.11	12.3	0.0	4.9	7.0	0.0	2.2	2	0	0	2	2	2	0	Probable	RNA	and	SrmB-	binding	site	of	polymerase	A
Trp_repressor	PF01371.19	gi|257051555|ref|YP_003129388.1|	-	0.13	12.4	0.0	0.17	12.0	0.0	1.2	1	0	0	1	1	1	0	Trp	repressor	protein
HTH_36	PF13730.6	gi|257051555|ref|YP_003129388.1|	-	0.13	12.2	0.0	0.21	11.6	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
TMEM220	PF15071.6	gi|257051556|ref|YP_003129389.1|	-	0.12	13.1	0.1	0.21	12.4	0.1	1.3	1	0	0	1	1	1	0	Transmembrane	family	220,	helix
SIS	PF01380.22	gi|257051558|ref|YP_003129391.1|	-	2.2e-53	179.6	0.3	3.4e-27	94.9	0.1	2.3	2	0	0	2	2	2	2	SIS	domain
GATase_6	PF13522.6	gi|257051558|ref|YP_003129391.1|	-	9.8e-23	80.8	0.6	2.3e-22	79.6	0.1	1.8	2	1	0	2	2	2	1	Glutamine	amidotransferase	domain
GATase_7	PF13537.6	gi|257051558|ref|YP_003129391.1|	-	2.3e-18	66.3	0.0	4.1e-18	65.5	0.0	1.5	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
SIS_2	PF13580.6	gi|257051558|ref|YP_003129391.1|	-	0.0016	18.4	0.0	0.078	13.0	0.0	2.4	2	0	0	2	2	2	1	SIS	domain
GATase_4	PF13230.6	gi|257051558|ref|YP_003129391.1|	-	0.14	11.0	0.1	0.25	10.2	0.1	1.3	1	0	0	1	1	1	0	Glutamine	amidotransferases	class-II
DUF1616	PF07760.11	gi|257051559|ref|YP_003129392.1|	-	9.3e-51	172.9	0.0	1.1e-50	172.7	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1616)
PMT_2	PF13231.6	gi|257051560|ref|YP_003129393.1|	-	0.009	16.2	18.8	0.009	16.2	18.8	3.5	3	0	0	3	3	3	2	Dolichyl-phosphate-mannose-protein	mannosyltransferase
DUF4239	PF14023.6	gi|257051560|ref|YP_003129393.1|	-	3.8	7.2	7.5	0.23	11.2	0.3	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4239)
Glyco_transf_4	PF13439.6	gi|257051561|ref|YP_003129394.1|	-	7.4e-11	42.3	0.1	1.7e-10	41.2	0.0	1.7	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_1_4	PF13692.6	gi|257051561|ref|YP_003129394.1|	-	3.2e-10	40.6	0.1	6.5e-10	39.6	0.1	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.6	gi|257051561|ref|YP_003129394.1|	-	4.8e-09	36.9	0.8	4.8e-09	36.9	0.8	2.3	1	1	1	2	2	2	1	Glycosyl	transferase	4-like	domain
Glycos_transf_1	PF00534.20	gi|257051561|ref|YP_003129394.1|	-	1.3e-08	34.6	0.0	2e-08	34.0	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.6	gi|257051561|ref|YP_003129394.1|	-	0.065	13.6	0.0	0.12	12.7	0.0	1.4	1	0	0	1	1	1	0	Glycosyl	transferases	group	1
Glyco_trans_4_2	PF13477.6	gi|257051561|ref|YP_003129394.1|	-	0.21	11.6	0.0	0.39	10.7	0.0	1.4	1	0	0	1	1	1	0	Glycosyl	transferase	4-like
Sulfatase	PF00884.23	gi|257051562|ref|YP_003129395.1|	-	1.1e-34	120.2	0.3	1.6e-34	119.7	0.3	1.1	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.22	gi|257051562|ref|YP_003129395.1|	-	3.6e-08	33.4	1.2	0.0013	18.4	0.2	2.2	2	0	0	2	2	2	2	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Sulfatase_C	PF14707.6	gi|257051562|ref|YP_003129395.1|	-	0.076	13.8	0.0	0.21	12.3	0.0	1.8	1	0	0	1	1	1	0	C-terminal	region	of	aryl-sulfatase
Metalloenzyme	PF01676.18	gi|257051562|ref|YP_003129395.1|	-	0.08	12.3	0.1	0.18	11.1	0.1	1.6	2	0	0	2	2	2	0	Metalloenzyme	superfamily
DegQ	PF08181.11	gi|257051562|ref|YP_003129395.1|	-	0.096	12.8	0.4	0.31	11.2	0.0	1.9	2	0	0	2	2	2	0	DegQ	(SacQ)	family
Hexapep	PF00132.24	gi|257051563|ref|YP_003129396.1|	-	5.7e-28	95.6	9.0	1.9e-09	36.9	0.4	4.7	3	1	1	5	5	5	4	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|257051563|ref|YP_003129396.1|	-	9.9e-21	73.2	5.7	1.7e-08	34.0	0.9	4.4	4	0	0	4	4	4	4	Hexapeptide	repeat	of	succinyl-transferase
DegT_DnrJ_EryC1	PF01041.17	gi|257051564|ref|YP_003129397.1|	-	2.1e-122	408.9	0.2	2.4e-122	408.7	0.2	1.0	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Beta_elim_lyase	PF01212.21	gi|257051564|ref|YP_003129397.1|	-	1.8e-07	30.8	1.0	5.9e-07	29.0	1.0	1.8	1	1	0	1	1	1	1	Beta-eliminating	lyase
Aminotran_1_2	PF00155.21	gi|257051564|ref|YP_003129397.1|	-	0.00032	20.0	0.0	0.00056	19.2	0.0	1.5	1	1	0	1	1	1	1	Aminotransferase	class	I	and	II
HEAT_2	PF13646.6	gi|257051564|ref|YP_003129397.1|	-	3	8.3	7.6	2.8	8.4	1.4	3.1	3	0	0	3	3	3	0	HEAT	repeats
YdjM	PF04307.14	gi|257051565|ref|YP_003129398.1|	-	6.2e-09	35.4	3.7	8.6e-09	34.9	3.7	1.3	1	0	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
Polysacc_deac_1	PF01522.21	gi|257051566|ref|YP_003129399.1|	-	0.0037	17.1	0.0	0.0085	16.0	0.0	1.7	2	0	0	2	2	2	1	Polysaccharide	deacetylase
Glycos_transf_2	PF00535.26	gi|257051567|ref|YP_003129400.1|	-	1.6e-17	63.9	0.1	2.7e-17	63.1	0.1	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|257051567|ref|YP_003129400.1|	-	0.0014	18.6	0.0	0.0021	18.0	0.0	1.3	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.6	gi|257051567|ref|YP_003129400.1|	-	0.01	16.3	0.0	0.021	15.3	0.0	1.5	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
ATPgrasp_Ter	PF15632.6	gi|257051568|ref|YP_003129401.1|	-	5.4e-34	116.8	0.0	8.1e-34	116.2	0.0	1.2	1	0	0	1	1	1	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
ATP-grasp_3	PF02655.14	gi|257051568|ref|YP_003129401.1|	-	5e-11	42.9	0.0	8.8e-11	42.1	0.0	1.4	1	1	0	1	1	1	1	ATP-grasp	domain
CPSase_L_D2	PF02786.17	gi|257051568|ref|YP_003129401.1|	-	3.8e-06	26.6	0.0	0.014	14.9	0.0	2.1	2	0	0	2	2	2	2	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATP-grasp_4	PF13535.6	gi|257051568|ref|YP_003129401.1|	-	0.00022	20.9	0.0	0.0023	17.5	0.0	2.2	1	1	0	1	1	1	1	ATP-grasp	domain
ATPgrasp_ST	PF14397.6	gi|257051568|ref|YP_003129401.1|	-	0.11	11.8	0.0	1.4	8.1	0.0	2.1	2	0	0	2	2	2	0	Sugar-transfer	associated	ATP-grasp
HAD_2	PF13419.6	gi|257051569|ref|YP_003129402.1|	-	1e-20	74.5	0.0	1.2e-20	74.3	0.0	1.0	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|257051569|ref|YP_003129402.1|	-	3.3e-08	34.1	0.0	4.2e-07	30.5	0.0	2.0	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|257051569|ref|YP_003129402.1|	-	4.8e-05	23.3	0.0	0.00013	22.0	0.0	1.7	1	0	0	1	1	1	1	HAD-hyrolase-like
HAD	PF12710.7	gi|257051569|ref|YP_003129402.1|	-	0.00033	21.1	0.1	0.00045	20.7	0.1	1.3	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Polysacc_synt_C	PF14667.6	gi|257051570|ref|YP_003129403.1|	-	5.1e-17	62.3	13.8	5.1e-17	62.3	13.8	4.1	3	1	1	4	4	4	1	Polysaccharide	biosynthesis	C-terminal	domain
Polysacc_synt_3	PF13440.6	gi|257051570|ref|YP_003129403.1|	-	8.5e-10	38.3	14.7	8.5e-10	38.3	14.7	3.0	2	1	0	2	2	2	1	Polysaccharide	biosynthesis	protein
Polysacc_synt	PF01943.17	gi|257051570|ref|YP_003129403.1|	-	7e-09	35.5	21.7	7e-09	35.5	21.7	2.6	2	1	1	3	3	3	1	Polysaccharide	biosynthesis	protein
PIG-Y	PF15159.6	gi|257051570|ref|YP_003129403.1|	-	8.6	7.4	12.9	0.29	12.1	0.6	4.1	3	1	0	3	3	3	0	Phosphatidylinositol	N-acetylglucosaminyltransferase	subunit	Y
Glycos_transf_2	PF00535.26	gi|257051571|ref|YP_003129404.1|	-	2.3e-20	73.1	0.1	3.8e-20	72.4	0.1	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|257051571|ref|YP_003129404.1|	-	2.5e-14	53.7	0.4	1.5e-10	41.3	0.3	2.1	1	1	1	2	2	2	2	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.6	gi|257051571|ref|YP_003129404.1|	-	1.2e-09	38.4	2.5	1.4e-08	34.9	0.4	2.1	1	1	1	2	2	2	1	Glycosyl	transferase	family	group	2
Glyco_tranf_2_2	PF10111.9	gi|257051571|ref|YP_003129404.1|	-	0.00042	19.9	0.0	0.0014	18.2	0.0	1.7	1	1	0	2	2	2	1	Glycosyltransferase	like	family	2
Glyco_transf_21	PF13506.6	gi|257051571|ref|YP_003129404.1|	-	0.0022	17.5	0.0	0.0058	16.1	0.0	1.5	1	1	0	1	1	1	1	Glycosyl	transferase	family	21
Glyco_tranf_2_4	PF13704.6	gi|257051571|ref|YP_003129404.1|	-	0.1	13.1	0.0	0.27	11.8	0.0	1.8	1	1	0	1	1	1	0	Glycosyl	transferase	family	2
Beta_helix	PF13229.6	gi|257051572|ref|YP_003129405.1|	-	0.00011	22.1	7.8	0.0003	20.7	4.5	2.7	2	1	0	3	3	3	1	Right	handed	beta	helix	region
DegT_DnrJ_EryC1	PF01041.17	gi|257051573|ref|YP_003129406.1|	-	1.7e-39	136.2	0.0	7.3e-26	91.3	0.0	2.1	2	0	0	2	2	2	2	DegT/DnrJ/EryC1/StrS	aminotransferase	family
GFO_IDH_MocA	PF01408.22	gi|257051574|ref|YP_003129407.1|	-	2.2e-21	76.9	0.1	5.5e-21	75.6	0.1	1.7	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
F420_oxidored	PF03807.17	gi|257051574|ref|YP_003129407.1|	-	6.8e-07	29.8	0.0	2.3e-06	28.1	0.0	2.0	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
IlvN	PF07991.12	gi|257051574|ref|YP_003129407.1|	-	2.9e-05	23.7	0.1	7.6e-05	22.3	0.1	1.6	2	0	0	2	2	2	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
2-Hacid_dh_C	PF02826.19	gi|257051574|ref|YP_003129407.1|	-	7.6e-05	22.1	0.0	0.00016	21.1	0.0	1.6	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Sacchrp_dh_NADP	PF03435.18	gi|257051574|ref|YP_003129407.1|	-	0.0015	18.8	3.2	0.0069	16.6	0.1	3.1	2	2	1	3	3	3	1	Saccharopine	dehydrogenase	NADP	binding	domain
NAD_binding_3	PF03447.16	gi|257051574|ref|YP_003129407.1|	-	0.0063	17.2	0.3	0.019	15.6	0.1	1.8	2	0	0	2	2	2	1	Homoserine	dehydrogenase,	NAD	binding	domain
NAD_binding_2	PF03446.15	gi|257051574|ref|YP_003129407.1|	-	0.007	16.5	0.0	0.021	15.0	0.0	1.8	2	0	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Semialdhyde_dh	PF01118.24	gi|257051574|ref|YP_003129407.1|	-	0.07	13.6	0.2	0.4	11.1	0.0	2.2	2	0	0	2	2	2	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
CoA_binding	PF02629.19	gi|257051574|ref|YP_003129407.1|	-	0.071	13.8	0.0	0.18	12.5	0.0	1.6	1	0	0	1	1	1	0	CoA	binding	domain
UDPG_MGDP_dh_N	PF03721.14	gi|257051575|ref|YP_003129408.1|	-	4.8e-36	124.1	0.1	8.2e-36	123.3	0.1	1.3	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
UDPG_MGDP_dh	PF00984.19	gi|257051575|ref|YP_003129408.1|	-	1.4e-19	70.1	0.0	2.2e-19	69.4	0.0	1.4	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	central	domain
UDPG_MGDP_dh_C	PF03720.15	gi|257051575|ref|YP_003129408.1|	-	1.7e-16	60.5	0.0	3.9e-16	59.4	0.0	1.6	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
NAD_binding_2	PF03446.15	gi|257051575|ref|YP_003129408.1|	-	9.6e-05	22.6	0.4	0.00067	19.8	0.3	2.5	2	1	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
TrkA_N	PF02254.18	gi|257051575|ref|YP_003129408.1|	-	0.0028	17.9	3.7	0.98	9.7	0.0	3.6	4	0	0	4	4	4	2	TrkA-N	domain
NAD_Gly3P_dh_N	PF01210.23	gi|257051575|ref|YP_003129408.1|	-	0.061	13.3	0.0	0.18	11.8	0.0	1.8	2	0	0	2	2	2	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
DUF354	PF04007.12	gi|257051576|ref|YP_003129409.1|	-	9.1e-13	48.0	0.0	1.6e-12	47.2	0.0	1.4	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF354)
Glyco_transf_4	PF13439.6	gi|257051576|ref|YP_003129409.1|	-	0.02	14.9	0.6	0.068	13.2	0.2	2.0	2	0	0	2	2	2	0	Glycosyltransferase	Family	4
Epimerase_2	PF02350.19	gi|257051576|ref|YP_003129409.1|	-	0.046	12.6	0.0	0.092	11.6	0.0	1.5	1	1	0	1	1	1	0	UDP-N-acetylglucosamine	2-epimerase
HTH_IclR	PF09339.10	gi|257051576|ref|YP_003129409.1|	-	0.053	13.3	0.0	0.14	12.0	0.0	1.7	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
DUF179	PF02622.15	gi|257051577|ref|YP_003129410.1|	-	0.18	11.8	0.0	0.19	11.7	0.0	1.1	1	0	0	1	1	1	0	Uncharacterized	ACR,	COG1678
Phos_pyr_kin	PF08543.12	gi|257051578|ref|YP_003129411.1|	-	2e-80	269.8	4.1	2.6e-80	269.4	4.1	1.2	1	0	0	1	1	1	1	Phosphomethylpyrimidine	kinase
ThiP_synth	PF10120.9	gi|257051578|ref|YP_003129411.1|	-	1.3e-34	119.3	0.6	2.9e-34	118.0	0.3	1.8	2	0	0	2	2	2	1	Thiamine-phosphate	synthase
PfkB	PF00294.24	gi|257051578|ref|YP_003129411.1|	-	8.8e-08	31.8	2.2	1.5e-07	31.0	2.2	1.3	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Big_3_5	PF16640.5	gi|257051579|ref|YP_003129412.1|	-	0.0016	18.6	11.8	0.0063	16.7	2.4	6.5	5	1	1	6	6	6	3	Bacterial	Ig-like	domain	(group	3)
Cohesin	PF00963.18	gi|257051579|ref|YP_003129412.1|	-	0.0032	17.7	4.2	0.24	11.6	0.5	3.8	2	2	1	3	3	3	1	Cohesin	domain
4HBT_3	PF13622.6	gi|257051579|ref|YP_003129412.1|	-	0.03	14.6	0.4	0.03	14.6	0.4	3.8	4	1	1	5	5	5	0	Thioesterase-like	superfamily
PilZ	PF07238.14	gi|257051579|ref|YP_003129412.1|	-	0.054	13.8	0.0	0.61	10.4	0.0	2.7	3	0	0	3	3	3	0	PilZ	domain
Fn3-like	PF14310.6	gi|257051579|ref|YP_003129412.1|	-	0.25	11.5	4.7	19	5.4	0.1	4.9	5	2	1	6	6	6	0	Fibronectin	type	III-like	domain
MinC_C	PF03775.16	gi|257051579|ref|YP_003129412.1|	-	0.31	11.1	1.8	15	5.7	0.1	2.6	2	0	0	2	2	2	0	Septum	formation	inhibitor	MinC,	C-terminal	domain
Cadherin-like	PF12733.7	gi|257051579|ref|YP_003129412.1|	-	7.4	7.2	20.0	2.4	8.8	0.9	5.1	2	1	2	4	4	4	0	Cadherin-like	beta	sandwich	domain
MutS_V	PF00488.21	gi|257051580|ref|YP_003129413.1|	-	5.9e-80	267.7	0.0	9.9e-80	267.0	0.0	1.4	1	0	0	1	1	1	1	MutS	domain	V
MutS_III	PF05192.18	gi|257051580|ref|YP_003129413.1|	-	3.5e-34	118.7	2.2	6.1e-34	117.9	2.2	1.4	1	0	0	1	1	1	1	MutS	domain	III
MutS_I	PF01624.20	gi|257051580|ref|YP_003129413.1|	-	6e-25	87.7	0.0	1.2e-24	86.7	0.0	1.5	1	0	0	1	1	1	1	MutS	domain	I
MutS_IV	PF05190.18	gi|257051580|ref|YP_003129413.1|	-	1.6e-24	86.1	1.2	3.2e-24	85.1	1.2	1.5	1	0	0	1	1	1	1	MutS	family	domain	IV
MutS_II	PF05188.17	gi|257051580|ref|YP_003129413.1|	-	1.3e-23	83.8	0.0	3.6e-23	82.4	0.0	1.7	1	0	0	1	1	1	1	MutS	domain	II
AAA_27	PF13514.6	gi|257051580|ref|YP_003129413.1|	-	0.044	13.4	0.0	0.19	11.3	0.0	2.1	1	0	0	1	1	1	0	AAA	domain
RNA_pol_Rpb2_45	PF10385.9	gi|257051580|ref|YP_003129413.1|	-	0.1	12.9	0.0	0.37	11.1	0.0	1.9	1	0	0	1	1	1	0	RNA	polymerase	beta	subunit	external	1	domain
AAA_14	PF13173.6	gi|257051580|ref|YP_003129413.1|	-	0.12	12.4	0.0	0.4	10.7	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_29	PF13555.6	gi|257051580|ref|YP_003129413.1|	-	0.13	12.0	0.0	0.35	10.6	0.0	1.7	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
CFAP91	PF14738.6	gi|257051580|ref|YP_003129413.1|	-	0.17	11.9	1.6	11	6.0	0.6	2.6	2	0	0	2	2	2	0	Cilia-	and	flagella-associated	protein	91
APG6_N	PF17675.1	gi|257051580|ref|YP_003129413.1|	-	0.29	11.7	2.1	0.73	10.4	2.1	1.7	1	0	0	1	1	1	0	Apg6	coiled-coil	region
DUF2391	PF09622.10	gi|257051581|ref|YP_003129414.1|	-	1.5e-05	24.5	2.9	2e-05	24.1	2.9	1.1	1	0	0	1	1	1	1	Putative	integral	membrane	protein	(DUF2391)
EPSP_synthase	PF00275.20	gi|257051582|ref|YP_003129415.1|	-	1.8e-106	356.3	0.3	2.2e-106	356.1	0.3	1.0	1	0	0	1	1	1	1	EPSP	synthase	(3-phosphoshikimate	1-carboxyvinyltransferase)
Cu_amine_oxidN1	PF07833.11	gi|257051582|ref|YP_003129415.1|	-	0.17	12.4	0.0	0.54	10.8	0.0	2.0	1	1	0	1	1	1	0	Copper	amine	oxidase	N-terminal	domain
PAS_4	PF08448.10	gi|257051583|ref|YP_003129416.1|	-	1.3e-26	93.0	5.9	1.7e-08	34.7	0.0	4.2	4	0	0	4	4	4	3	PAS	fold
Response_reg	PF00072.24	gi|257051583|ref|YP_003129416.1|	-	3.1e-20	72.4	0.0	8e-20	71.1	0.0	1.7	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HATPase_c	PF02518.26	gi|257051583|ref|YP_003129416.1|	-	9.6e-20	71.2	0.1	2.2e-19	70.0	0.1	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
GAF_2	PF13185.6	gi|257051583|ref|YP_003129416.1|	-	1.8e-16	60.7	2.4	2.4e-16	60.3	0.2	2.5	3	0	0	3	3	3	1	GAF	domain
PAS_8	PF13188.7	gi|257051583|ref|YP_003129416.1|	-	5.4e-13	48.6	0.5	0.00011	22.1	0.0	3.8	3	0	0	3	3	3	2	PAS	domain
PAS_3	PF08447.12	gi|257051583|ref|YP_003129416.1|	-	7.2e-13	48.6	0.1	8.5e-09	35.6	0.0	3.6	3	0	0	3	3	3	2	PAS	fold
PAS_9	PF13426.7	gi|257051583|ref|YP_003129416.1|	-	2.1e-12	47.2	0.1	7.1e-05	23.0	0.0	4.1	3	0	0	3	3	3	3	PAS	domain
PAS	PF00989.25	gi|257051583|ref|YP_003129416.1|	-	2.9e-10	40.1	0.1	0.027	14.5	0.0	3.8	3	0	0	3	3	3	3	PAS	fold
HisKA	PF00512.25	gi|257051583|ref|YP_003129416.1|	-	1.4e-07	31.5	0.4	1.4e-07	31.5	0.4	2.8	2	0	0	2	2	1	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_7	PF12860.7	gi|257051583|ref|YP_003129416.1|	-	1.4e-07	31.7	0.1	0.02	15.0	0.0	3.6	3	0	0	3	3	3	2	PAS	fold
GAF	PF01590.26	gi|257051583|ref|YP_003129416.1|	-	1e-05	26.1	0.0	3.7e-05	24.4	0.0	2.0	1	0	0	1	1	1	1	GAF	domain
GAF_3	PF13492.6	gi|257051583|ref|YP_003129416.1|	-	1.6e-05	25.3	0.0	3.4e-05	24.2	0.0	1.6	1	0	0	1	1	1	1	GAF	domain
HATPase_c_2	PF13581.6	gi|257051583|ref|YP_003129416.1|	-	0.00033	20.6	0.4	0.0011	18.9	0.4	1.9	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
OKR_DC_1_N	PF03709.15	gi|257051583|ref|YP_003129416.1|	-	0.0061	16.8	0.0	0.022	15.0	0.0	2.0	2	0	0	2	2	2	1	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
ABC2_membrane	PF01061.24	gi|257051584|ref|YP_003129417.1|	-	4.8e-33	114.3	18.2	4.8e-33	114.3	18.2	1.4	2	0	0	2	2	2	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.7	gi|257051584|ref|YP_003129417.1|	-	2.6e-17	63.0	17.5	2.6e-17	63.0	17.5	1.6	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.7	gi|257051584|ref|YP_003129417.1|	-	0.0028	17.0	15.2	0.0028	17.0	15.2	2.1	1	1	1	2	2	2	2	ABC-2	family	transporter	protein
ABC_tran	PF00005.27	gi|257051585|ref|YP_003129418.1|	-	7.2e-31	107.5	0.0	1.1e-30	107.0	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|257051585|ref|YP_003129418.1|	-	4.9e-14	52.8	0.2	5.9e-09	36.2	0.0	2.2	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
DUF4162	PF13732.6	gi|257051585|ref|YP_003129418.1|	-	3e-08	34.3	0.0	7.1e-08	33.1	0.0	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4162)
AAA_16	PF13191.6	gi|257051585|ref|YP_003129418.1|	-	0.00073	20.0	0.0	0.0014	19.1	0.0	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|257051585|ref|YP_003129418.1|	-	0.0012	18.6	0.1	0.0026	17.5	0.1	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
SMC_N	PF02463.19	gi|257051585|ref|YP_003129418.1|	-	0.0023	17.4	0.0	0.076	12.4	0.0	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_30	PF13604.6	gi|257051585|ref|YP_003129418.1|	-	0.0026	17.5	0.0	0.0037	17.0	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|257051585|ref|YP_003129418.1|	-	0.0028	18.1	0.0	0.0075	16.7	0.0	1.9	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_15	PF13175.6	gi|257051585|ref|YP_003129418.1|	-	0.0063	16.3	0.0	0.78	9.4	0.0	2.1	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_23	PF13476.6	gi|257051585|ref|YP_003129418.1|	-	0.0083	16.7	0.4	0.013	16.0	0.4	1.5	1	1	0	1	1	1	1	AAA	domain
SRP54	PF00448.22	gi|257051585|ref|YP_003129418.1|	-	0.018	14.7	0.0	0.028	14.1	0.0	1.3	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_25	PF13481.6	gi|257051585|ref|YP_003129418.1|	-	0.019	14.5	1.7	3.4	7.2	0.4	3.0	2	1	0	2	2	2	0	AAA	domain
Rad17	PF03215.15	gi|257051585|ref|YP_003129418.1|	-	0.026	14.5	0.0	0.037	14.0	0.0	1.2	1	0	0	1	1	1	0	Rad17	P-loop	domain
TetR_C_6	PF13977.6	gi|257051586|ref|YP_003129419.1|	-	2.2e-12	47.2	2.9	4e-12	46.4	2.9	1.4	1	0	0	1	1	1	1	BetI-type	transcriptional	repressor,	C-terminal
TetR_C_27	PF17935.1	gi|257051586|ref|YP_003129419.1|	-	3e-08	33.7	2.2	5.4e-08	32.9	2.2	1.5	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_N	PF00440.23	gi|257051586|ref|YP_003129419.1|	-	1e-06	28.4	0.0	1.9e-06	27.6	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
TetR_C_24	PF17932.1	gi|257051586|ref|YP_003129419.1|	-	1.2e-06	28.8	0.4	1.9e-06	28.1	0.4	1.5	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_31	PF17940.1	gi|257051586|ref|YP_003129419.1|	-	0.003	17.7	0.2	0.0059	16.8	0.2	1.5	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_11	PF16859.5	gi|257051586|ref|YP_003129419.1|	-	0.018	15.3	0.4	0.033	14.5	0.3	1.5	1	1	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_29	PF17938.1	gi|257051586|ref|YP_003129419.1|	-	0.028	14.5	0.0	0.061	13.4	0.0	1.6	1	1	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_10	PF16295.5	gi|257051586|ref|YP_003129419.1|	-	0.037	14.3	0.3	0.06	13.6	0.3	1.3	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_17	PF17922.1	gi|257051586|ref|YP_003129419.1|	-	0.063	13.4	0.1	0.1	12.7	0.1	1.5	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
Peptidase_M24	PF00557.24	gi|257051587|ref|YP_003129420.1|	-	2.3e-47	161.4	1.9	1.5e-46	158.7	0.4	2.0	2	0	0	2	2	2	1	Metallopeptidase	family	M24
Creatinase_N	PF01321.18	gi|257051587|ref|YP_003129420.1|	-	4e-07	30.8	0.1	1.1e-06	29.4	0.1	1.7	1	0	0	1	1	1	1	Creatinase/Prolidase	N-terminal	domain
PfkB	PF00294.24	gi|257051588|ref|YP_003129421.1|	-	7.8e-60	202.7	0.1	8.9e-60	202.5	0.1	1.0	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Phos_pyr_kin	PF08543.12	gi|257051588|ref|YP_003129421.1|	-	0.0012	18.3	0.0	0.0017	17.8	0.0	1.2	1	0	0	1	1	1	1	Phosphomethylpyrimidine	kinase
GlcNAc_2-epim	PF07221.11	gi|257051589|ref|YP_003129422.1|	-	1.1e-94	317.5	9.4	1.4e-94	317.2	9.4	1.1	1	0	0	1	1	1	1	N-acylglucosamine	2-epimerase	(GlcNAc	2-epimerase)
Glyco_hydro_76	PF03663.14	gi|257051589|ref|YP_003129422.1|	-	2.3e-06	27.4	4.0	0.0014	18.2	0.5	3.1	3	0	0	3	3	3	2	Glycosyl	hydrolase	family	76
Glyco_hydro_127	PF07944.12	gi|257051589|ref|YP_003129422.1|	-	0.00081	18.0	0.1	0.0047	15.5	0.1	1.9	1	1	0	1	1	1	1	Beta-L-arabinofuranosidase,	GH127
T2SSE	PF00437.20	gi|257051590|ref|YP_003129423.1|	-	6.5e-13	48.4	0.1	1.2e-12	47.5	0.1	1.4	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_16	PF13191.6	gi|257051590|ref|YP_003129423.1|	-	0.00031	21.2	0.1	0.0015	18.9	0.0	2.2	2	0	0	2	2	2	1	AAA	ATPase	domain
PIN	PF01850.21	gi|257051590|ref|YP_003129423.1|	-	0.00062	20.3	0.2	0.0018	18.8	0.2	1.8	1	0	0	1	1	1	1	PIN	domain
NTPase_1	PF03266.15	gi|257051590|ref|YP_003129423.1|	-	0.001	19.0	0.0	0.0043	17.0	0.0	2.2	2	1	0	2	2	1	1	NTPase
Thymidylate_kin	PF02223.17	gi|257051590|ref|YP_003129423.1|	-	0.0017	18.0	0.0	0.0074	16.0	0.0	1.9	1	1	1	2	2	2	1	Thymidylate	kinase
AAA_18	PF13238.6	gi|257051590|ref|YP_003129423.1|	-	0.003	18.1	0.2	0.019	15.5	0.0	2.4	3	0	0	3	3	2	1	AAA	domain
AAA_5	PF07728.14	gi|257051590|ref|YP_003129423.1|	-	0.0046	17.0	0.0	0.011	15.8	0.0	1.6	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
IstB_IS21	PF01695.17	gi|257051590|ref|YP_003129423.1|	-	0.0052	16.5	0.0	0.01	15.6	0.0	1.4	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_29	PF13555.6	gi|257051590|ref|YP_003129423.1|	-	0.0056	16.4	0.0	0.015	15.0	0.0	1.7	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
KH_2	PF07650.17	gi|257051590|ref|YP_003129423.1|	-	0.0082	16.0	2.1	0.025	14.4	2.1	1.9	1	0	0	1	1	1	1	KH	domain
AAA_7	PF12775.7	gi|257051590|ref|YP_003129423.1|	-	0.0095	15.5	0.0	0.016	14.7	0.0	1.2	1	0	0	1	1	1	1	P-loop	containing	dynein	motor	region
AAA_30	PF13604.6	gi|257051590|ref|YP_003129423.1|	-	0.0096	15.7	0.0	0.038	13.7	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
MeaB	PF03308.16	gi|257051590|ref|YP_003129423.1|	-	0.0099	14.9	0.1	0.18	10.8	0.0	2.5	2	0	0	2	2	2	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_33	PF13671.6	gi|257051590|ref|YP_003129423.1|	-	0.011	15.9	0.0	0.052	13.7	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
KH_1	PF00013.29	gi|257051590|ref|YP_003129423.1|	-	0.011	15.5	1.1	0.03	14.1	0.6	2.0	1	1	0	1	1	1	0	KH	domain
KTI12	PF08433.10	gi|257051590|ref|YP_003129423.1|	-	0.013	15.0	0.0	0.022	14.2	0.0	1.3	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
AAA	PF00004.29	gi|257051590|ref|YP_003129423.1|	-	0.024	15.0	0.0	0.062	13.7	0.0	1.7	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.6	gi|257051590|ref|YP_003129423.1|	-	0.025	14.9	0.0	0.13	12.5	0.0	2.2	3	0	0	3	3	2	0	AAA	domain
ATP_bind_1	PF03029.17	gi|257051590|ref|YP_003129423.1|	-	0.026	14.3	0.0	0.041	13.7	0.0	1.3	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
AAA_25	PF13481.6	gi|257051590|ref|YP_003129423.1|	-	0.036	13.6	3.1	0.2	11.2	0.3	2.6	2	1	0	2	2	2	0	AAA	domain
Zeta_toxin	PF06414.12	gi|257051590|ref|YP_003129423.1|	-	0.042	13.1	0.0	0.094	12.0	0.0	1.5	1	0	0	1	1	1	0	Zeta	toxin
ATPase	PF06745.13	gi|257051590|ref|YP_003129423.1|	-	0.05	12.9	0.0	0.15	11.4	0.0	1.7	2	0	0	2	2	1	0	KaiC
NACHT	PF05729.12	gi|257051590|ref|YP_003129423.1|	-	0.057	13.3	0.0	0.11	12.4	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
KH_5	PF13184.6	gi|257051590|ref|YP_003129423.1|	-	0.059	13.5	0.2	0.16	12.1	0.2	1.7	1	0	0	1	1	1	0	NusA-like	KH	domain
AAA_28	PF13521.6	gi|257051590|ref|YP_003129423.1|	-	0.06	13.6	0.1	0.3	11.3	0.0	2.3	3	0	0	3	3	1	0	AAA	domain
RNA_helicase	PF00910.22	gi|257051590|ref|YP_003129423.1|	-	0.071	13.5	0.0	0.36	11.2	0.0	2.2	3	0	0	3	3	2	0	RNA	helicase
APS_kinase	PF01583.20	gi|257051590|ref|YP_003129423.1|	-	0.077	12.9	0.0	0.21	11.5	0.0	1.7	2	0	0	2	2	1	0	Adenylylsulphate	kinase
Viral_helicase1	PF01443.18	gi|257051590|ref|YP_003129423.1|	-	0.11	12.2	0.0	0.17	11.6	0.0	1.3	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
Sigma54_activat	PF00158.26	gi|257051590|ref|YP_003129423.1|	-	0.13	12.0	0.0	0.24	11.1	0.0	1.3	1	0	0	1	1	1	0	Sigma-54	interaction	domain
TsaE	PF02367.17	gi|257051590|ref|YP_003129423.1|	-	0.15	12.1	0.0	0.33	11.0	0.0	1.5	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
ABC_tran	PF00005.27	gi|257051590|ref|YP_003129423.1|	-	0.16	12.5	0.0	0.35	11.4	0.0	1.6	1	0	0	1	1	1	0	ABC	transporter
Imm1	PF14430.6	gi|257051590|ref|YP_003129423.1|	-	0.61	10.7	5.7	0.54	10.9	0.4	3.1	2	1	1	3	3	2	0	Immunity	protein	Imm1
DUF445	PF04286.12	gi|257051591|ref|YP_003129424.1|	-	0.00033	20.6	18.2	0.0018	18.2	18.2	1.9	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF445)
COMPASS-Shg1	PF05205.12	gi|257051591|ref|YP_003129424.1|	-	0.00065	20.4	14.2	0.25	12.0	6.0	3.0	1	1	1	2	2	2	2	COMPASS	(Complex	proteins	associated	with	Set1p)	component	shg1
DUF2884	PF11101.8	gi|257051591|ref|YP_003129424.1|	-	0.00082	19.0	19.0	1.1	8.7	18.9	2.9	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF2884)
DUF5314	PF17241.2	gi|257051591|ref|YP_003129424.1|	-	0.0018	18.0	10.0	1.4	8.5	0.8	3.4	1	1	2	3	3	3	3	Family	of	unknown	function	(DUF5314)
EcsC	PF12787.7	gi|257051591|ref|YP_003129424.1|	-	0.0025	17.6	3.7	2.7	7.6	3.7	3.1	1	1	0	1	1	1	1	EcsC	protein	family
YpjP	PF14005.6	gi|257051591|ref|YP_003129424.1|	-	0.0045	17.0	19.5	1.6	8.8	6.6	3.3	1	1	1	2	2	2	1	YpjP-like	protein
MT0933_antitox	PF14013.6	gi|257051591|ref|YP_003129424.1|	-	0.0095	16.2	20.2	1.8e+04	-8.2	20.2	5.0	1	1	0	1	1	0	0	MT0933-like	antitoxin	protein
GerPC	PF10737.9	gi|257051591|ref|YP_003129424.1|	-	0.014	15.5	6.7	0.66	10.0	3.4	2.1	1	1	1	2	2	2	0	Spore	germination	protein	GerPC
DXP_synthase_N	PF13292.6	gi|257051591|ref|YP_003129424.1|	-	0.028	13.6	1.0	0.48	9.6	0.0	2.3	1	1	2	3	3	3	0	1-deoxy-D-xylulose-5-phosphate	synthase
Nexin_C	PF08628.12	gi|257051591|ref|YP_003129424.1|	-	0.066	13.8	2.1	44	4.7	2.1	3.8	1	1	0	1	1	1	0	Sorting	nexin	C	terminal
SecA_SW	PF07516.13	gi|257051591|ref|YP_003129424.1|	-	0.067	13.2	15.2	34	4.4	15.3	2.3	1	1	0	1	1	1	0	SecA	Wing	and	Scaffold	domain
CEL_III_C	PF18054.1	gi|257051591|ref|YP_003129424.1|	-	0.1	12.6	20.0	0.62	10.1	7.9	2.1	1	1	1	2	2	2	0	CEL-III	C-terminal
RNase_J_C	PF17770.1	gi|257051591|ref|YP_003129424.1|	-	0.22	12.6	14.1	1.8e+04	-3.6	14.1	4.0	1	1	0	1	1	0	0	Ribonuclease	J	C-terminal	domain
PROCN	PF08083.11	gi|257051591|ref|YP_003129424.1|	-	0.42	9.3	2.3	4.3	5.9	0.4	2.0	1	1	1	2	2	2	0	PROCN	(NUC071)	domain
DUF3819	PF12842.7	gi|257051591|ref|YP_003129424.1|	-	0.78	9.7	16.1	58	3.6	0.2	3.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3819)
Cornifin	PF02389.15	gi|257051591|ref|YP_003129424.1|	-	1.1	9.5	6.2	7.5	6.8	6.2	1.9	1	1	0	1	1	1	0	Cornifin	(SPRR)	family
Glycoprot_B_PH2	PF17417.2	gi|257051591|ref|YP_003129424.1|	-	1.2	9.5	12.8	94	3.4	0.2	3.9	1	1	1	2	2	2	0	Herpesvirus	Glycoprotein	B	PH-like	domain
Sec3_C_2	PF15278.6	gi|257051591|ref|YP_003129424.1|	-	1.3	9.4	21.8	2.4	8.6	2.6	4.6	1	1	3	4	4	4	0	Sec3	exocyst	complex	subunit
PGDH_C	PF16896.5	gi|257051591|ref|YP_003129424.1|	-	2	8.3	25.5	1.2e+02	2.6	2.3	4.4	1	1	1	2	2	1	0	Phosphogluconate	dehydrogenase	(decarboxylating)	C-term
Methyltransf_7	PF03492.15	gi|257051591|ref|YP_003129424.1|	-	2.9	7.0	9.6	2.1e+02	0.9	9.6	2.2	1	1	0	1	1	1	0	SAM	dependent	carboxyl	methyltransferase
NTS_2	PF15448.6	gi|257051591|ref|YP_003129424.1|	-	3.1	8.3	6.0	4.6	7.7	1.3	3.3	1	1	3	4	4	4	0	N-terminal	segments	of	P.	falciparum	erythrocyte	membrane	protein
ACP	PF06857.11	gi|257051591|ref|YP_003129424.1|	-	3.4	8.0	19.5	1.8e+02	2.5	7.1	4.1	1	1	1	2	2	2	0	Malonate	decarboxylase	delta	subunit	(MdcD)
tRNA_bind_2	PF13725.6	gi|257051591|ref|YP_003129424.1|	-	6	6.5	17.4	1.7	8.3	1.2	2.4	1	1	1	2	2	2	0	Possible	tRNA	binding	domain
Virul_fac_BrkB	PF03631.15	gi|257051591|ref|YP_003129424.1|	-	6.1	6.4	7.4	17	4.9	0.1	3.5	1	1	2	3	3	3	0	Virulence	factor	BrkB
DUF302	PF03625.14	gi|257051592|ref|YP_003129425.1|	-	1.6e-22	79.1	0.0	2.3e-22	78.6	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF302
GARS_A	PF01071.19	gi|257051593|ref|YP_003129426.1|	-	5.8e-52	176.3	0.0	9.1e-52	175.7	0.0	1.3	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
GARS_N	PF02844.15	gi|257051593|ref|YP_003129426.1|	-	3.5e-21	75.8	0.0	8.2e-21	74.6	0.0	1.6	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	N	domain
GARS_C	PF02843.16	gi|257051593|ref|YP_003129426.1|	-	2.7e-13	50.0	0.8	8.9e-13	48.3	0.3	2.1	2	0	0	2	2	2	1	Phosphoribosylglycinamide	synthetase,	C	domain
ATP-grasp_3	PF02655.14	gi|257051593|ref|YP_003129426.1|	-	3.5e-06	27.1	0.0	7.2e-06	26.1	0.0	1.5	1	1	0	1	1	1	1	ATP-grasp	domain
ATPgrasp_ST	PF14397.6	gi|257051593|ref|YP_003129426.1|	-	0.0061	15.8	0.0	0.011	15.1	0.0	1.4	1	0	0	1	1	1	1	Sugar-transfer	associated	ATP-grasp
CPSase_L_D2	PF02786.17	gi|257051593|ref|YP_003129426.1|	-	0.025	14.1	0.0	0.05	13.1	0.0	1.5	1	0	0	1	1	1	0	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATP-grasp_4	PF13535.6	gi|257051593|ref|YP_003129426.1|	-	0.034	13.8	0.0	0.14	11.7	0.0	2.0	2	1	0	2	2	2	0	ATP-grasp	domain
Thioredox_DsbH	PF03190.15	gi|257051594|ref|YP_003129427.1|	-	6.3e-73	244.1	0.0	9.2e-73	243.6	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF255
Thioredoxin_7	PF13899.6	gi|257051594|ref|YP_003129427.1|	-	6.2e-09	35.9	0.0	2e-08	34.3	0.0	1.9	2	0	0	2	2	2	1	Thioredoxin-like
GlcNAc_2-epim	PF07221.11	gi|257051594|ref|YP_003129427.1|	-	0.00049	19.5	0.0	0.16	11.2	0.0	2.3	2	0	0	2	2	2	2	N-acylglucosamine	2-epimerase	(GlcNAc	2-epimerase)
Thioredoxin	PF00085.20	gi|257051595|ref|YP_003129428.1|	-	2.8e-09	36.9	0.0	3.6e-09	36.5	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_9	PF14595.6	gi|257051595|ref|YP_003129428.1|	-	0.00033	20.4	0.0	0.00046	20.0	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin
AhpC-TSA	PF00578.21	gi|257051595|ref|YP_003129428.1|	-	0.016	15.1	0.1	0.059	13.3	0.0	1.8	1	1	1	2	2	2	0	AhpC/TSA	family
Thioredoxin_8	PF13905.6	gi|257051595|ref|YP_003129428.1|	-	0.037	14.3	0.0	1.2	9.5	0.0	2.3	1	1	1	2	2	2	0	Thioredoxin-like
PALP	PF00291.25	gi|257051596|ref|YP_003129429.1|	-	1.3e-62	211.9	0.7	1.7e-62	211.5	0.7	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
ADH_zinc_N	PF00107.26	gi|257051596|ref|YP_003129429.1|	-	0.0047	16.9	0.0	0.011	15.8	0.0	1.7	1	1	0	1	1	1	1	Zinc-binding	dehydrogenase
DFP	PF04127.15	gi|257051596|ref|YP_003129429.1|	-	0.078	12.8	0.3	1.3	8.9	0.0	2.5	2	0	0	2	2	2	0	DNA	/	pantothenate	metabolism	flavoprotein
Response_reg	PF00072.24	gi|257051597|ref|YP_003129430.1|	-	3.3e-23	82.0	0.0	7.7e-23	80.8	0.0	1.6	1	0	0	1	1	1	1	Response	regulator	receiver	domain
PAS_9	PF13426.7	gi|257051597|ref|YP_003129430.1|	-	4.7e-11	42.9	0.0	1.7e-09	37.9	0.0	3.0	3	1	0	3	3	3	1	PAS	domain
GAF_2	PF13185.6	gi|257051597|ref|YP_003129430.1|	-	6e-08	33.1	0.0	1.6e-07	31.7	0.0	1.7	1	0	0	1	1	1	1	GAF	domain
PAS	PF00989.25	gi|257051597|ref|YP_003129430.1|	-	4.8e-07	29.8	0.0	1.7e-06	28.0	0.0	2.0	1	0	0	1	1	1	1	PAS	fold
PAS_8	PF13188.7	gi|257051597|ref|YP_003129430.1|	-	1e-05	25.4	0.4	0.00019	21.4	0.0	2.9	3	0	0	3	3	3	1	PAS	domain
GAF	PF01590.26	gi|257051597|ref|YP_003129430.1|	-	0.00034	21.3	0.0	0.00062	20.4	0.0	1.5	1	0	0	1	1	1	1	GAF	domain
PAS_4	PF08448.10	gi|257051597|ref|YP_003129430.1|	-	0.00049	20.3	0.1	0.0071	16.6	0.0	2.5	2	0	0	2	2	2	1	PAS	fold
GAF_3	PF13492.6	gi|257051597|ref|YP_003129430.1|	-	0.0005	20.4	0.0	0.0013	19.1	0.0	1.7	2	0	0	2	2	2	1	GAF	domain
ThiI	PF02568.14	gi|257051599|ref|YP_003129432.1|	-	1.7e-43	148.6	0.0	2.3e-43	148.1	0.0	1.1	1	0	0	1	1	1	1	Thiamine	biosynthesis	protein	(ThiI)
THUMP	PF02926.17	gi|257051599|ref|YP_003129432.1|	-	5.4e-13	49.3	0.0	7.4e-13	48.8	0.0	1.2	1	0	0	1	1	1	1	THUMP	domain
QueC	PF06508.13	gi|257051599|ref|YP_003129432.1|	-	3.5e-05	23.4	0.0	0.28	10.7	0.0	2.2	2	0	0	2	2	2	2	Queuosine	biosynthesis	protein	QueC
tRNA_Me_trans	PF03054.16	gi|257051599|ref|YP_003129432.1|	-	0.019	13.8	0.0	0.028	13.2	0.0	1.2	1	0	0	1	1	1	0	tRNA	methyl	transferase
ATP_bind_3	PF01171.20	gi|257051599|ref|YP_003129432.1|	-	0.042	13.6	0.0	0.079	12.7	0.0	1.4	1	1	0	1	1	1	0	PP-loop	family
AdoMet_Synthase	PF01941.19	gi|257051600|ref|YP_003129433.1|	-	3.9e-173	575.8	4.7	4.4e-173	575.6	4.7	1.0	1	0	0	1	1	1	1	S-adenosylmethionine	synthetase	(AdoMet	synthetase)
Asp23	PF03780.13	gi|257051600|ref|YP_003129433.1|	-	3.8	8.0	7.3	3.1	8.3	1.3	3.2	2	2	0	2	2	2	0	Asp23	family,	cell	envelope-related	function
CYTH	PF01928.21	gi|257051601|ref|YP_003129434.1|	-	6.4e-43	146.8	3.5	7.2e-43	146.6	3.5	1.0	1	0	0	1	1	1	1	CYTH	domain
FKBP_C	PF00254.28	gi|257051602|ref|YP_003129435.1|	-	2.1e-05	24.8	1.2	4e-05	23.9	0.1	2.1	2	1	0	2	2	2	1	FKBP-type	peptidyl-prolyl	cis-trans	isomerase
ScdA_N	PF04405.14	gi|257051602|ref|YP_003129435.1|	-	0.15	11.8	0.4	0.37	10.5	0.4	1.6	1	0	0	1	1	1	0	Domain	of	Unknown	function	(DUF542)
NUDIX	PF00293.28	gi|257051603|ref|YP_003129436.1|	-	9.4e-15	54.8	1.3	1.4e-14	54.3	1.3	1.1	1	0	0	1	1	1	1	NUDIX	domain
ATPase	PF06745.13	gi|257051606|ref|YP_003129439.1|	-	7e-08	32.1	0.0	0.0015	18.0	0.0	2.1	1	1	0	2	2	2	2	KaiC
Importin_rep_3	PF18806.1	gi|257051606|ref|YP_003129439.1|	-	0.061	13.4	0.0	0.12	12.5	0.0	1.4	1	0	0	1	1	1	0	Importin	13	repeat
OTCace_N	PF02729.21	gi|257051607|ref|YP_003129440.1|	-	2.4e-42	144.5	0.0	5.1e-42	143.4	0.0	1.5	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	carbamoyl-P	binding	domain
OTCace	PF00185.24	gi|257051607|ref|YP_003129440.1|	-	1.5e-28	99.8	0.0	2.3e-28	99.2	0.0	1.3	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	Asp/Orn	binding	domain
PyrI	PF01948.18	gi|257051608|ref|YP_003129441.1|	-	1.5e-33	114.9	0.8	1.9e-33	114.6	0.8	1.1	1	0	0	1	1	1	1	Aspartate	carbamoyltransferase	regulatory	chain,	allosteric	domain
PyrI_C	PF02748.15	gi|257051608|ref|YP_003129441.1|	-	1.6e-12	47.1	1.1	3.4e-12	46.1	1.1	1.5	1	0	0	1	1	1	1	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
NUDIX	PF00293.28	gi|257051610|ref|YP_003129443.1|	-	3.8e-15	56.1	0.1	5.8e-15	55.5	0.1	1.3	1	0	0	1	1	1	1	NUDIX	domain
RNA_binding	PF01877.17	gi|257051612|ref|YP_003129445.1|	-	3.2e-31	108.1	0.0	4.5e-31	107.6	0.0	1.2	1	0	0	1	1	1	1	RNA	binding
Arg_decarbox_C	PF17944.1	gi|257051612|ref|YP_003129445.1|	-	0.11	13.1	0.1	0.31	11.6	0.1	1.8	1	0	0	1	1	1	0	Arginine	decarboxylase	C-terminal	helical	extension
RNase_P_p30	PF01876.16	gi|257051613|ref|YP_003129446.1|	-	2.7e-36	125.0	0.0	3.3e-36	124.8	0.0	1.0	1	0	0	1	1	1	1	RNase	P	subunit	p30
HisKA_4TM	PF16926.5	gi|257051614|ref|YP_003129447.1|	-	3.3e-12	46.3	2.1	7.9e-12	45.0	2.1	1.6	1	0	0	1	1	1	1	Archaeal	4TM	region	of	histidine	kinase
GAF_3	PF13492.6	gi|257051614|ref|YP_003129447.1|	-	0.0059	17.0	0.7	0.023	15.1	0.2	2.1	2	1	0	2	2	2	1	GAF	domain
GAF_2	PF13185.6	gi|257051614|ref|YP_003129447.1|	-	0.0084	16.4	1.4	0.017	15.4	0.2	2.2	2	1	0	2	2	2	1	GAF	domain
GAF	PF01590.26	gi|257051614|ref|YP_003129447.1|	-	0.072	13.7	0.2	0.16	12.6	0.2	1.6	1	0	0	1	1	1	0	GAF	domain
SdpI	PF13630.6	gi|257051615|ref|YP_003129448.1|	-	0.11	12.7	0.0	0.14	12.4	0.0	1.2	1	0	0	1	1	1	0	SdpI/YhfL	protein	family
MTS	PF05175.14	gi|257051616|ref|YP_003129449.1|	-	9.6e-13	48.0	0.0	1.4e-12	47.4	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_25	PF13649.6	gi|257051616|ref|YP_003129449.1|	-	7.5e-11	42.6	0.0	5.1e-10	39.9	0.0	2.2	2	1	0	2	2	2	1	Methyltransferase	domain
PrmA	PF06325.13	gi|257051616|ref|YP_003129449.1|	-	1.6e-10	40.9	0.0	2.1e-10	40.5	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
UPF0020	PF01170.18	gi|257051616|ref|YP_003129449.1|	-	2.3e-10	40.5	0.1	4.3e-09	36.3	0.1	2.1	1	1	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Methyltransf_31	PF13847.6	gi|257051616|ref|YP_003129449.1|	-	8e-09	35.5	0.0	1.8e-08	34.3	0.0	1.6	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|257051616|ref|YP_003129449.1|	-	4e-08	33.8	0.0	1.4e-07	32.0	0.0	1.9	2	0	0	2	2	2	1	Methyltransferase	domain
Cons_hypoth95	PF03602.15	gi|257051616|ref|YP_003129449.1|	-	2.2e-06	27.4	0.0	3.1e-06	26.9	0.0	1.1	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
Methyltransf_32	PF13679.6	gi|257051616|ref|YP_003129449.1|	-	6.9e-06	26.1	0.0	8.9e-06	25.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|257051616|ref|YP_003129449.1|	-	6.4e-05	22.8	0.0	7.7e-05	22.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|257051616|ref|YP_003129449.1|	-	0.00012	21.5	0.0	0.00031	20.2	0.0	1.6	2	0	0	2	2	2	1	ubiE/COQ5	methyltransferase	family
Methyltransf_12	PF08242.12	gi|257051616|ref|YP_003129449.1|	-	0.00015	22.5	0.0	0.00025	21.7	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.7	gi|257051616|ref|YP_003129449.1|	-	0.00075	19.5	0.0	0.0011	18.9	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
N6_Mtase	PF02384.16	gi|257051616|ref|YP_003129449.1|	-	0.0012	18.2	0.0	0.0017	17.7	0.0	1.2	1	0	0	1	1	1	1	N-6	DNA	Methylase
Methyltransf_9	PF08003.11	gi|257051616|ref|YP_003129449.1|	-	0.0027	16.7	0.0	0.0038	16.2	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
FtsJ	PF01728.19	gi|257051616|ref|YP_003129449.1|	-	0.0085	16.2	0.0	0.01	15.9	0.0	1.2	1	0	0	1	1	1	1	FtsJ-like	methyltransferase
Methyltransf_15	PF09445.10	gi|257051616|ref|YP_003129449.1|	-	0.013	15.1	0.0	0.018	14.6	0.0	1.2	1	0	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
Met_10	PF02475.16	gi|257051616|ref|YP_003129449.1|	-	0.015	15.1	0.0	0.019	14.7	0.0	1.2	1	0	0	1	1	1	0	Met-10+	like-protein
PCMT	PF01135.19	gi|257051616|ref|YP_003129449.1|	-	0.03	14.1	0.0	0.041	13.6	0.0	1.1	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
CMAS	PF02353.20	gi|257051616|ref|YP_003129449.1|	-	0.1	11.9	0.0	0.14	11.4	0.0	1.1	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
Methyltransf_4	PF02390.17	gi|257051616|ref|YP_003129449.1|	-	0.11	11.9	0.0	0.2	11.1	0.0	1.4	1	0	0	1	1	1	0	Putative	methyltransferase
Methyltrans_SAM	PF10672.9	gi|257051616|ref|YP_003129449.1|	-	0.2	10.8	0.0	0.28	10.3	0.0	1.2	1	0	0	1	1	1	0	S-adenosylmethionine-dependent	methyltransferase
Rhomboid	PF01694.22	gi|257051617|ref|YP_003129450.1|	-	2.3e-09	37.5	20.2	2.3e-09	37.5	20.2	2.6	2	1	0	2	2	2	1	Rhomboid	family
DUF2795	PF11387.8	gi|257051618|ref|YP_003129451.1|	-	0.011	15.9	0.1	0.39	10.9	0.0	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2795)
Glycos_transf_2	PF00535.26	gi|257051619|ref|YP_003129452.1|	-	4e-19	69.0	0.0	5.9e-19	68.5	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|257051619|ref|YP_003129452.1|	-	1.8e-10	41.1	0.0	2.7e-10	40.6	0.0	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
NTP_transf_3	PF12804.7	gi|257051619|ref|YP_003129452.1|	-	0.0029	18.0	0.0	0.0044	17.4	0.0	1.3	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
SfLAP	PF11139.8	gi|257051619|ref|YP_003129452.1|	-	0.0056	16.2	1.0	0.0079	15.7	1.0	1.1	1	0	0	1	1	1	1	Sap,	sulfolipid-1-addressing	protein
Glyco_tranf_2_4	PF13704.6	gi|257051619|ref|YP_003129452.1|	-	0.0096	16.4	0.0	0.022	15.3	0.0	1.6	1	1	0	1	1	1	1	Glycosyl	transferase	family	2
YSIRK_signal	PF04650.17	gi|257051619|ref|YP_003129452.1|	-	0.39	10.6	2.8	0.7	9.8	2.8	1.4	1	0	0	1	1	1	0	YSIRK	type	signal	peptide
Transgly_assoc	PF04226.13	gi|257051619|ref|YP_003129452.1|	-	1.5	9.2	8.0	6.3	7.1	0.0	2.5	2	0	0	2	2	2	0	Transglycosylase	associated	protein
Sulfatase	PF00884.23	gi|257051620|ref|YP_003129453.1|	-	7.5e-31	107.7	0.0	1.3e-30	106.9	0.0	1.4	1	1	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.22	gi|257051620|ref|YP_003129453.1|	-	1.2e-10	41.6	0.6	2.1e-09	37.4	0.6	2.1	1	1	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF229	PF02995.17	gi|257051620|ref|YP_003129453.1|	-	2.8e-05	22.9	0.0	0.00029	19.6	0.0	2.0	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF229)
DUF1501	PF07394.12	gi|257051620|ref|YP_003129453.1|	-	0.0074	15.4	0.1	0.012	14.7	0.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1501)
DUF3573	PF12097.8	gi|257051620|ref|YP_003129453.1|	-	0.048	12.5	0.0	0.073	11.9	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3573)
OrfB_Zn_ribbon	PF07282.11	gi|257051621|ref|YP_003129454.1|	-	2e-22	78.9	0.3	4.8e-22	77.7	0.3	1.7	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|257051621|ref|YP_003129454.1|	-	3e-08	33.9	0.0	5e-08	33.2	0.0	1.4	1	0	0	1	1	1	1	Probable	transposase
zf-piccolo	PF05715.13	gi|257051621|ref|YP_003129454.1|	-	0.035	14.2	0.6	0.098	12.8	0.6	1.7	1	0	0	1	1	1	0	Piccolo	Zn-finger
C1_2	PF03107.16	gi|257051621|ref|YP_003129454.1|	-	0.067	13.5	1.7	0.15	12.4	1.7	1.6	1	0	0	1	1	1	0	C1	domain
Phosphodiest	PF01663.22	gi|257051622|ref|YP_003129455.1|	-	1.6e-13	51.0	0.8	3.5e-13	49.9	0.8	1.6	1	1	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Metalloenzyme	PF01676.18	gi|257051622|ref|YP_003129455.1|	-	0.00055	19.4	0.4	0.00075	18.9	0.4	1.2	1	0	0	1	1	1	1	Metalloenzyme	superfamily
Sulfatase	PF00884.23	gi|257051622|ref|YP_003129455.1|	-	0.0057	16.1	0.1	0.3	10.5	0.1	2.1	1	1	0	1	1	1	1	Sulfatase
Sulfatase	PF00884.23	gi|257051623|ref|YP_003129456.1|	-	1.6e-43	149.3	0.1	2e-43	148.9	0.1	1.1	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.22	gi|257051623|ref|YP_003129456.1|	-	3.6e-06	26.8	5.0	0.0004	20.1	5.1	2.4	1	1	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF229	PF02995.17	gi|257051623|ref|YP_003129456.1|	-	0.0041	15.8	0.0	0.47	9.0	0.0	2.1	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF229)
Metalloenzyme	PF01676.18	gi|257051623|ref|YP_003129456.1|	-	0.036	13.4	0.0	0.055	12.8	0.0	1.3	1	0	0	1	1	1	0	Metalloenzyme	superfamily
Alk_phosphatase	PF00245.20	gi|257051623|ref|YP_003129456.1|	-	0.076	12.0	0.3	0.34	9.8	0.0	2.0	2	1	1	3	3	3	0	Alkaline	phosphatase
NYN_YacP	PF05991.11	gi|257051623|ref|YP_003129456.1|	-	0.18	11.7	0.0	0.29	11.0	0.0	1.3	1	0	0	1	1	1	0	YacP-like	NYN	domain
Polysacc_synt_C	PF14667.6	gi|257051624|ref|YP_003129457.1|	-	1.3e-14	54.4	11.9	1.3e-14	54.4	11.9	4.4	1	1	2	4	4	4	1	Polysaccharide	biosynthesis	C-terminal	domain
MurJ	PF03023.14	gi|257051624|ref|YP_003129457.1|	-	0.00059	18.6	9.3	0.00059	18.6	9.3	2.8	2	1	0	2	2	2	1	Lipid	II	flippase	MurJ
S1FA	PF04689.13	gi|257051624|ref|YP_003129457.1|	-	2.1	8.6	5.5	63	3.8	0.0	3.9	2	1	1	3	3	3	0	DNA	binding	protein	S1FA
Sulfatase	PF00884.23	gi|257051625|ref|YP_003129458.1|	-	1.7e-38	132.8	0.8	2.1e-38	132.5	0.8	1.1	1	0	0	1	1	1	1	Sulfatase
DUF4976	PF16347.5	gi|257051625|ref|YP_003129458.1|	-	1.3e-06	28.6	0.0	3e-06	27.4	0.0	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4976)
DUF4994	PF16385.5	gi|257051625|ref|YP_003129458.1|	-	0.00035	20.4	0.0	0.015	15.2	0.0	2.4	1	1	0	1	1	1	1	Domain	of	unknown	function
Sulfatase_C	PF14707.6	gi|257051625|ref|YP_003129458.1|	-	0.093	13.5	0.0	0.18	12.5	0.0	1.4	1	0	0	1	1	1	0	C-terminal	region	of	aryl-sulfatase
Med9	PF07544.13	gi|257051625|ref|YP_003129458.1|	-	0.12	12.5	0.0	0.26	11.4	0.0	1.5	1	0	0	1	1	1	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
Glycos_transf_1	PF00534.20	gi|257051626|ref|YP_003129459.1|	-	8.9e-28	97.0	0.0	1.3e-27	96.5	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|257051626|ref|YP_003129459.1|	-	1.6e-26	93.4	0.0	3.3e-26	92.3	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.6	gi|257051626|ref|YP_003129459.1|	-	3.3e-06	27.4	0.0	1.5e-05	25.3	0.0	2.1	3	0	0	3	3	3	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.6	gi|257051626|ref|YP_003129459.1|	-	0.003	18.0	2.3	0.0053	17.2	2.3	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
AOC_like	PF18678.1	gi|257051626|ref|YP_003129459.1|	-	0.035	13.7	0.1	0.085	12.5	0.0	1.5	1	1	0	1	1	1	0	Allene	oxide	cyclase	barrel	like	domain
Glycos_transf_2	PF00535.26	gi|257051627|ref|YP_003129460.1|	-	1.5e-25	90.0	0.1	2.4e-25	89.3	0.1	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|257051627|ref|YP_003129460.1|	-	3.4e-11	43.5	0.2	1e-10	41.9	0.2	1.7	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.9	gi|257051627|ref|YP_003129460.1|	-	7.3e-07	28.9	0.6	9.6e-06	25.3	0.0	2.0	2	0	0	2	2	2	1	Glycosyltransferase	like	family	2
Glyco_transf_21	PF13506.6	gi|257051627|ref|YP_003129460.1|	-	0.013	15.0	0.0	0.04	13.4	0.0	1.8	1	1	0	1	1	1	0	Glycosyl	transferase	family	21
Glyco_tranf_2_5	PF13712.6	gi|257051627|ref|YP_003129460.1|	-	0.027	14.1	0.0	0.061	13.0	0.0	1.5	2	0	0	2	2	2	0	Glycosyltransferase	like	family
Glyco_trans_2_3	PF13632.6	gi|257051627|ref|YP_003129460.1|	-	0.082	12.8	0.0	0.11	12.3	0.0	1.4	1	0	0	1	1	1	0	Glycosyl	transferase	family	group	2
Glyco_transf_7C	PF02709.14	gi|257051627|ref|YP_003129460.1|	-	0.15	11.7	0.5	2.9	7.6	0.1	2.6	2	1	0	2	2	2	0	N-terminal	domain	of	galactosyltransferase
Fer4	PF00037.27	gi|257051628|ref|YP_003129461.1|	-	6.5e-11	41.6	13.8	3.4e-07	29.8	5.0	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|257051628|ref|YP_003129461.1|	-	1.7e-09	38.1	4.3	6.2e-05	23.5	1.5	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|257051628|ref|YP_003129461.1|	-	5.1e-08	33.0	5.0	7.8e-08	32.4	5.0	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|257051628|ref|YP_003129461.1|	-	6.9e-07	29.3	18.6	4.7e-05	23.4	7.9	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|257051628|ref|YP_003129461.1|	-	3.3e-06	26.9	13.6	4e-05	23.5	5.3	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|257051628|ref|YP_003129461.1|	-	6.2e-06	26.3	10.3	4.3e-05	23.6	10.5	1.9	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|257051628|ref|YP_003129461.1|	-	1.1e-05	26.2	5.6	0.00041	21.2	1.6	2.4	2	0	0	2	2	2	1	4Fe-4S	double	cluster	binding	domain
Fer4_17	PF13534.6	gi|257051628|ref|YP_003129461.1|	-	1.8e-05	25.2	1.4	0.026	15.1	0.6	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|257051628|ref|YP_003129461.1|	-	9.8e-05	22.7	6.2	0.0027	18.1	6.8	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|257051628|ref|YP_003129461.1|	-	0.00035	20.5	11.1	0.0094	16.0	4.1	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|257051628|ref|YP_003129461.1|	-	0.00065	20.0	1.6	0.00065	20.0	1.6	2.2	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|257051628|ref|YP_003129461.1|	-	0.0023	18.1	3.4	0.0023	18.1	3.4	2.0	1	1	1	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|257051628|ref|YP_003129461.1|	-	0.0023	18.7	4.1	0.0023	18.7	4.1	2.3	2	0	0	2	2	2	1	4Fe-4S	binding	domain
ETF_QO	PF05187.13	gi|257051628|ref|YP_003129461.1|	-	0.0026	17.8	0.4	0.0029	17.7	0.4	1.1	1	0	0	1	1	1	1	Electron	transfer	flavoprotein-ubiquinone	oxidoreductase,	4Fe-4S
Fer4_13	PF13370.6	gi|257051628|ref|YP_003129461.1|	-	0.0083	16.6	13.7	0.23	12.0	13.7	2.5	1	1	0	1	1	1	1	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
RibD_C	PF01872.17	gi|257051630|ref|YP_003129463.1|	-	3.3e-53	180.5	0.1	3.6e-53	180.4	0.1	1.0	1	0	0	1	1	1	1	RibD	C-terminal	domain
tRNA_anti-codon	PF01336.25	gi|257051631|ref|YP_003129464.1|	-	3.4e-07	30.2	2.1	0.11	12.5	0.1	4.2	4	1	0	4	4	4	3	OB-fold	nucleic	acid	binding	domain
zf-RING_7	PF02591.15	gi|257051631|ref|YP_003129464.1|	-	0.021	15.0	0.1	0.051	13.8	0.1	1.7	1	0	0	1	1	1	0	C4-type	zinc	ribbon	domain
CytochromB561_N	PF09786.9	gi|257051632|ref|YP_003129465.1|	-	2.8	6.8	5.2	3.6	6.5	5.2	1.1	1	0	0	1	1	1	0	Cytochrome	B561,	N	terminal
Metallophos	PF00149.28	gi|257051633|ref|YP_003129466.1|	-	4.5e-08	33.8	0.0	8.5e-08	32.9	0.0	1.4	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|257051633|ref|YP_003129466.1|	-	1.1e-07	32.2	0.2	1.7e-07	31.5	0.2	1.3	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Creatininase	PF02633.14	gi|257051635|ref|YP_003129468.1|	-	5.8e-66	222.4	0.5	6.6e-66	222.2	0.5	1.0	1	0	0	1	1	1	1	Creatinine	amidohydrolase
DEAD_assoc	PF08494.11	gi|257051636|ref|YP_003129469.1|	-	4.4e-33	114.7	0.0	1e-32	113.5	0.0	1.6	1	0	0	1	1	1	1	DEAD/H	associated
DEAD	PF00270.29	gi|257051636|ref|YP_003129469.1|	-	6e-29	101.0	0.0	3e-28	98.8	0.0	2.0	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|257051636|ref|YP_003129469.1|	-	1.3e-21	77.0	0.1	1.4e-20	73.6	0.1	2.5	3	0	0	3	3	3	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|257051636|ref|YP_003129469.1|	-	2.2e-09	37.6	0.0	4.5e-09	36.5	0.0	1.5	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
AAA_25	PF13481.6	gi|257051636|ref|YP_003129469.1|	-	0.00022	20.9	2.6	0.00028	20.5	0.6	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_19	PF13245.6	gi|257051636|ref|YP_003129469.1|	-	0.001	19.4	0.1	0.011	16.0	0.0	2.7	3	0	0	3	3	3	1	AAA	domain
HypA	PF01155.19	gi|257051636|ref|YP_003129469.1|	-	0.074	13.1	0.2	0.22	11.6	0.2	1.7	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DZR	PF12773.7	gi|257051637|ref|YP_003129470.1|	-	0.054	13.5	1.1	0.09	12.8	1.1	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
UPF0547	PF10571.9	gi|257051637|ref|YP_003129470.1|	-	0.27	11.4	6.8	0.6	10.2	6.8	1.6	1	1	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
DUF872	PF05915.12	gi|257051637|ref|YP_003129470.1|	-	0.45	10.7	2.4	0.71	10.1	1.5	1.6	1	1	1	2	2	2	0	Eukaryotic	protein	of	unknown	function	(DUF872)
zf-ribbon_3	PF13248.6	gi|257051637|ref|YP_003129470.1|	-	1.4	8.4	4.4	3.9	7.0	4.4	1.7	1	1	0	1	1	1	0	zinc-ribbon	domain
MutS_V	PF00488.21	gi|257051638|ref|YP_003129471.1|	-	1.4e-08	35.0	0.0	2.7e-08	34.1	0.0	1.4	1	0	0	1	1	1	1	MutS	domain	V
AAA_28	PF13521.6	gi|257051638|ref|YP_003129471.1|	-	0.00019	21.7	0.9	0.00096	19.4	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
AAA_21	PF13304.6	gi|257051638|ref|YP_003129471.1|	-	0.0011	18.9	0.0	0.003	17.4	0.0	1.7	1	0	0	1	1	1	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
DUF4232	PF14016.6	gi|257051638|ref|YP_003129471.1|	-	0.014	15.5	0.2	0.043	13.9	0.2	1.8	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4232)
IMS_HHH	PF11798.8	gi|257051638|ref|YP_003129471.1|	-	0.023	15.0	0.0	0.06	13.7	0.0	1.8	1	0	0	1	1	1	0	IMS	family	HHH	motif
AAA_14	PF13173.6	gi|257051638|ref|YP_003129471.1|	-	0.028	14.4	0.0	0.054	13.5	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
Ferredoxin_N	PF16947.5	gi|257051638|ref|YP_003129471.1|	-	0.099	12.8	0.5	0.77	9.9	0.5	2.4	2	0	0	2	2	2	0	N-terminal	region	of	4Fe-4S	ferredoxin	iron-sulfur	binding
AMMECR1	PF01871.17	gi|257051639|ref|YP_003129472.1|	-	1.9e-51	174.0	0.0	2.2e-51	173.8	0.0	1.0	1	0	0	1	1	1	1	AMMECR1
DUF357	PF04010.13	gi|257051640|ref|YP_003129473.1|	-	8.6e-32	109.0	0.1	9.9e-32	108.8	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF357)
TFIIB	PF00382.19	gi|257051641|ref|YP_003129474.1|	-	1.3e-40	137.3	0.2	9.6e-20	70.4	0.1	2.2	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|257051641|ref|YP_003129474.1|	-	4.9e-17	61.2	5.0	1.1e-16	60.1	5.0	1.6	1	0	0	1	1	1	1	TFIIB	zinc-binding
HTH_24	PF13412.6	gi|257051641|ref|YP_003129474.1|	-	0.012	15.2	0.1	0.028	14.0	0.1	1.7	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Sigma70_r4	PF04545.16	gi|257051641|ref|YP_003129474.1|	-	0.023	14.2	3.9	0.051	13.1	0.1	3.1	3	0	0	3	3	3	0	Sigma-70,	region	4
zf-RRN7	PF11781.8	gi|257051641|ref|YP_003129474.1|	-	0.038	13.7	2.6	0.058	13.1	2.6	1.3	1	0	0	1	1	1	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
HTH_11	PF08279.12	gi|257051641|ref|YP_003129474.1|	-	0.039	13.9	0.1	0.089	12.8	0.1	1.6	1	0	0	1	1	1	0	HTH	domain
Cyclin_C	PF02984.19	gi|257051641|ref|YP_003129474.1|	-	0.039	14.0	0.0	0.18	11.9	0.0	1.9	2	0	0	2	2	2	0	Cyclin,	C-terminal	domain
zf-TFIIB	PF13453.6	gi|257051641|ref|YP_003129474.1|	-	0.052	12.9	0.1	0.14	11.5	0.1	1.7	1	0	0	1	1	1	0	Transcription	factor	zinc-finger
HTH_AsnC-type	PF13404.6	gi|257051641|ref|YP_003129474.1|	-	0.056	13.3	0.1	0.22	11.4	0.1	2.1	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
A2L_zn_ribbon	PF08792.10	gi|257051641|ref|YP_003129474.1|	-	0.14	11.9	1.2	0.3	10.9	1.2	1.5	1	1	0	1	1	1	0	A2L	zinc	ribbon	domain
DUF1272	PF06906.11	gi|257051641|ref|YP_003129474.1|	-	0.18	11.9	1.0	0.21	11.7	0.1	1.6	2	0	0	2	2	1	0	Protein	of	unknown	function	(DUF1272)
zinc_ribbon_9	PF14369.6	gi|257051641|ref|YP_003129474.1|	-	0.24	11.7	0.3	0.24	11.7	0.3	1.9	1	1	1	2	2	2	0	zinc-ribbon
zf-ribbon_3	PF13248.6	gi|257051641|ref|YP_003129474.1|	-	0.24	10.9	3.8	1.1	8.7	3.8	2.0	1	1	0	1	1	1	0	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|257051641|ref|YP_003129474.1|	-	0.37	10.8	1.2	0.77	9.7	1.2	1.5	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Auto_anti-p27	PF06677.12	gi|257051641|ref|YP_003129474.1|	-	0.37	11.0	1.5	0.65	10.2	1.5	1.4	1	0	0	1	1	1	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
Zn-ribbon_8	PF09723.10	gi|257051641|ref|YP_003129474.1|	-	0.6	10.3	4.2	1.5	9.0	0.5	2.4	1	1	1	2	2	2	0	Zinc	ribbon	domain
FUN14	PF04930.15	gi|257051642|ref|YP_003129475.1|	-	7.1e-23	80.8	6.1	8.5e-23	80.6	6.1	1.1	1	0	0	1	1	1	1	FUN14	family
Acetyltransf_1	PF00583.25	gi|257051643|ref|YP_003129476.1|	-	1.7e-17	63.7	0.1	1.9e-17	63.5	0.1	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|257051643|ref|YP_003129476.1|	-	4.9e-09	36.2	0.0	6e-09	35.9	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|257051643|ref|YP_003129476.1|	-	1.1e-08	35.4	0.0	1.5e-08	35.0	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
PanZ	PF12568.8	gi|257051643|ref|YP_003129476.1|	-	0.00043	20.0	0.0	0.00045	19.9	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain,	PanZ
Acetyltransf_4	PF13420.7	gi|257051643|ref|YP_003129476.1|	-	0.002	18.3	0.0	0.0025	17.9	0.0	1.3	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|257051643|ref|YP_003129476.1|	-	0.019	15.1	0.0	0.03	14.4	0.0	1.3	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
Pribosyltran	PF00156.27	gi|257051644|ref|YP_003129477.1|	-	2.4e-16	59.6	4.1	2.5e-16	59.6	3.2	1.4	1	1	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.6	gi|257051644|ref|YP_003129477.1|	-	0.0027	17.2	0.2	0.0034	16.8	0.2	1.3	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
Proton_antipo_M	PF00361.20	gi|257051647|ref|YP_003129480.1|	-	1.4e-66	224.7	16.6	1.4e-66	224.7	16.6	2.7	2	0	0	2	2	2	1	Proton-conducting	membrane	transporter
DUF4040	PF13244.6	gi|257051647|ref|YP_003129480.1|	-	1e-16	60.8	12.8	1e-16	60.8	12.8	5.2	4	0	0	4	4	4	1	Domain	of	unknown	function	(DUF4040)
Proton_antipo_N	PF00662.20	gi|257051647|ref|YP_003129480.1|	-	1e-12	47.9	0.1	1e-12	47.9	0.1	3.5	4	0	0	4	4	4	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
Oxidored_q3	PF00499.20	gi|257051647|ref|YP_003129480.1|	-	0.0017	18.1	9.5	0.0017	18.1	9.5	4.9	4	1	0	4	4	4	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	6
DUF3918	PF13056.6	gi|257051647|ref|YP_003129480.1|	-	0.92	9.2	3.3	0.79	9.4	0.2	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3918)
YrhC	PF14143.6	gi|257051647|ref|YP_003129480.1|	-	3.9	7.6	11.7	2	8.5	0.6	3.7	2	2	0	2	2	2	0	YrhC-like	protein
MnhB	PF04039.13	gi|257051648|ref|YP_003129481.1|	-	4.3e-31	107.8	14.9	1.7e-30	105.9	14.9	1.7	1	1	0	1	1	1	1	Domain	related	to	MnhB	subunit	of	Na+/H+	antiporter
DUF3377	PF11857.8	gi|257051648|ref|YP_003129481.1|	-	0.042	13.8	0.4	0.11	12.5	0.4	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3377)
DUF5313	PF17240.2	gi|257051648|ref|YP_003129481.1|	-	0.078	13.4	0.0	0.12	12.8	0.0	1.3	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5313)
Phage_holin_3_6	PF07332.11	gi|257051648|ref|YP_003129481.1|	-	2.7	8.1	15.3	7.1	6.7	8.9	2.2	2	0	0	2	2	2	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
Oxidored_q2	PF00420.24	gi|257051649|ref|YP_003129482.1|	-	5e-30	103.2	2.0	5.9e-30	103.0	2.0	1.1	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
DUF5134	PF17197.4	gi|257051649|ref|YP_003129482.1|	-	0.014	15.3	0.2	0.017	15.0	0.2	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5134)
Phage_holin_2_3	PF16080.5	gi|257051649|ref|YP_003129482.1|	-	0.5	10.2	2.5	1.9	8.3	0.2	2.3	2	0	0	2	2	2	0	Bacteriophage	holin	family	HP1
Proton_antipo_M	PF00361.20	gi|257051650|ref|YP_003129483.1|	-	1.2e-52	179.0	18.8	1.2e-52	179.0	18.8	3.0	2	1	0	2	2	2	1	Proton-conducting	membrane	transporter
Proton_antipo_N	PF00662.20	gi|257051650|ref|YP_003129483.1|	-	0.00067	19.7	0.7	0.00067	19.7	0.7	2.9	3	0	0	3	3	3	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
NADHdeh_related	PF10125.9	gi|257051650|ref|YP_003129483.1|	-	0.0052	16.2	8.0	0.0052	16.2	8.0	2.8	2	1	1	3	3	3	1	NADH	dehydrogenase	I,	subunit	N	related	protein
MNHE	PF01899.16	gi|257051651|ref|YP_003129484.1|	-	3.9e-40	137.0	1.0	4.9e-40	136.6	1.0	1.0	1	0	0	1	1	1	1	Na+/H+	ion	antiporter	subunit
MrpF_PhaF	PF04066.13	gi|257051652|ref|YP_003129485.1|	-	2.5e-17	63.0	9.8	2.5e-17	63.0	9.8	2.2	2	0	0	2	2	2	1	Multiple	resistance	and	pH	regulation	protein	F	(MrpF	/	PhaF)
PhaG_MnhG_YufB	PF03334.14	gi|257051652|ref|YP_003129485.1|	-	0.36	11.1	11.0	0.54	10.5	11.0	1.3	1	0	0	1	1	1	0	Na+/H+	antiporter	subunit
DUF4006	PF13179.6	gi|257051652|ref|YP_003129485.1|	-	5.9	6.9	5.9	12	5.9	5.6	1.6	1	1	0	1	1	1	0	Family	of	unknown	function	(DUF4006)
PhaG_MnhG_YufB	PF03334.14	gi|257051653|ref|YP_003129486.1|	-	4.2e-24	84.6	8.9	5.4e-24	84.2	8.9	1.2	1	0	0	1	1	1	1	Na+/H+	antiporter	subunit
DFP	PF04127.15	gi|257051654|ref|YP_003129487.1|	-	7.5e-46	156.3	4.3	6.3e-45	153.3	0.9	2.2	2	0	0	2	2	2	2	DNA	/	pantothenate	metabolism	flavoprotein
Flavoprotein	PF02441.19	gi|257051654|ref|YP_003129487.1|	-	1.6e-32	112.5	0.3	2.5e-32	111.8	0.3	1.3	1	0	0	1	1	1	1	Flavoprotein
PALP	PF00291.25	gi|257051654|ref|YP_003129487.1|	-	0.03	13.8	5.2	0.55	9.6	0.2	2.6	1	1	1	2	2	2	0	Pyridoxal-phosphate	dependent	enzyme
Glyco_trans_4_4	PF13579.6	gi|257051654|ref|YP_003129487.1|	-	5.3	7.5	8.3	3.6	8.0	1.3	3.3	2	2	0	2	2	2	0	Glycosyl	transferase	4-like	domain
PALP	PF00291.25	gi|257051655|ref|YP_003129488.1|	-	4.2e-44	151.1	0.8	5.3e-44	150.8	0.8	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Pilin_N	PF07790.11	gi|257051656|ref|YP_003129489.1|	-	6.6e-24	84.6	2.5	1.2e-23	83.8	2.5	1.4	1	0	0	1	1	1	1	Archaeal	Type	IV	pilin,	N-terminal
MacB_PCD	PF12704.7	gi|257051656|ref|YP_003129489.1|	-	0.022	15.1	2.2	0.027	14.8	2.2	1.1	1	0	0	1	1	1	0	MacB-like	periplasmic	core	domain
Flp1_like	PF16982.5	gi|257051656|ref|YP_003129489.1|	-	0.059	12.8	0.8	0.1	12.0	0.8	1.5	1	0	0	1	1	1	0	Putative	Flagellin,	Flp1-like,	domain
Copper-bind	PF00127.20	gi|257051657|ref|YP_003129490.1|	-	6.3e-13	49.0	0.1	2.3e-12	47.2	0.1	1.8	1	1	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
NAD_kinase	PF01513.21	gi|257051659|ref|YP_003129492.1|	-	2.4e-13	49.9	0.5	2.8e-13	49.7	0.5	1.1	1	0	0	1	1	1	1	ATP-NAD	kinase
sCache_3_2	PF17203.4	gi|257051659|ref|YP_003129492.1|	-	0.067	13.3	0.9	0.11	12.6	0.9	1.5	1	1	0	1	1	1	0	Single	cache	domain	3
DUF4131	PF13567.6	gi|257051661|ref|YP_003129494.1|	-	0.036	13.7	0.7	0.036	13.7	0.7	2.9	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4131)
DUF2746	PF10874.8	gi|257051661|ref|YP_003129494.1|	-	0.21	12.0	0.0	0.36	11.3	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2746)
DUF2723	PF11028.8	gi|257051663|ref|YP_003129496.1|	-	0.013	15.5	0.3	0.016	15.1	0.3	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2723)
UbiA	PF01040.18	gi|257051663|ref|YP_003129496.1|	-	0.028	13.7	3.3	0.036	13.4	3.3	1.1	1	0	0	1	1	1	0	UbiA	prenyltransferase	family
DUF308	PF03729.13	gi|257051663|ref|YP_003129496.1|	-	0.071	13.4	5.6	0.098	13.0	5.6	1.2	1	0	0	1	1	1	0	Short	repeat	of	unknown	function	(DUF308)
ABC2_membrane_3	PF12698.7	gi|257051663|ref|YP_003129496.1|	-	0.96	8.5	4.4	1.3	8.0	4.4	1.1	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
Cytochrom_B_C	PF00032.17	gi|257051664|ref|YP_003129497.1|	-	1.9e-08	34.5	0.3	1.9e-08	34.5	0.3	1.6	2	0	0	2	2	2	1	Cytochrome	b(C-terminal)/b6/petD
DUF2214	PF09980.9	gi|257051664|ref|YP_003129497.1|	-	0.057	13.2	0.1	0.12	12.2	0.1	1.4	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2214)
Jiraiya	PF15038.6	gi|257051664|ref|YP_003129497.1|	-	0.081	12.4	0.5	0.86	9.0	0.2	2.1	2	0	0	2	2	2	0	Jiraiya
Cytochrome_B	PF00033.19	gi|257051665|ref|YP_003129498.1|	-	1.7e-44	151.9	15.4	2.9e-44	151.2	15.4	1.3	1	0	0	1	1	1	1	Cytochrome	b/b6/petB
Cytochrom_B_N_2	PF13631.6	gi|257051665|ref|YP_003129498.1|	-	7.6e-42	143.2	9.6	1.5e-41	142.2	9.1	1.7	2	0	0	2	2	2	1	Cytochrome	b(N-terminal)/b6/petB
DUF4405	PF14358.6	gi|257051665|ref|YP_003129498.1|	-	0.00028	21.4	2.1	0.00028	21.4	2.1	2.9	2	1	0	2	2	2	1	Domain	of	unknown	function	(DUF4405)
DUF373	PF04123.13	gi|257051665|ref|YP_003129498.1|	-	0.005	16.3	1.2	0.0065	16.0	0.6	1.3	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF373)
Ni_hydr_CYTB	PF01292.20	gi|257051665|ref|YP_003129498.1|	-	0.032	13.8	18.7	0.1	12.2	3.4	2.2	1	1	1	2	2	2	0	Prokaryotic	cytochrome	b561
Rieske	PF00355.26	gi|257051666|ref|YP_003129499.1|	-	0.00037	20.4	0.1	0.00072	19.5	0.1	1.5	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Flp1_like	PF16982.5	gi|257051667|ref|YP_003129500.1|	-	0.088	12.2	0.4	0.17	11.3	0.4	1.4	1	0	0	1	1	1	0	Putative	Flagellin,	Flp1-like,	domain
Copper-bind	PF00127.20	gi|257051668|ref|YP_003129501.1|	-	2.8e-13	50.2	0.2	1.1e-12	48.3	0.2	1.9	1	1	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
TAT_signal	PF10518.9	gi|257051668|ref|YP_003129501.1|	-	0.0028	17.4	6.5	0.0028	17.4	6.5	2.6	2	0	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
UCR_Fe-S_N	PF10399.9	gi|257051668|ref|YP_003129501.1|	-	0.76	9.2	6.0	2.7	7.4	6.0	2.0	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
Cytochrom_B561	PF03188.16	gi|257051670|ref|YP_003129503.1|	-	0.041	14.0	2.4	0.079	13.1	2.4	1.6	1	0	0	1	1	1	0	Eukaryotic	cytochrome	b561
HhH-GPD	PF00730.25	gi|257051671|ref|YP_003129504.1|	-	2.1e-22	79.6	0.0	3.1e-22	79.1	0.0	1.3	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH	PF00633.23	gi|257051671|ref|YP_003129504.1|	-	2.6e-10	39.6	0.4	2.6e-09	36.5	0.0	2.8	3	0	0	3	3	3	1	Helix-hairpin-helix	motif
HHH_5	PF14520.6	gi|257051671|ref|YP_003129504.1|	-	0.00015	22.3	0.1	0.073	13.7	0.0	2.6	3	0	0	3	3	3	2	Helix-hairpin-helix	domain
EndIII_4Fe-2S	PF10576.9	gi|257051671|ref|YP_003129504.1|	-	0.00027	21.2	4.7	0.00042	20.6	4.7	1.3	1	0	0	1	1	1	1	Iron-sulfur	binding	domain	of	endonuclease	III
5_3_exonuc	PF01367.20	gi|257051671|ref|YP_003129504.1|	-	0.071	13.7	0.0	0.15	12.7	0.0	1.5	1	0	0	1	1	1	0	5'-3'	exonuclease,	C-terminal	SAM	fold
HHH_8	PF14716.6	gi|257051671|ref|YP_003129504.1|	-	0.11	12.9	0.0	0.37	11.2	0.0	1.9	1	1	0	1	1	1	0	Helix-hairpin-helix	domain
Acetyltransf_3	PF13302.7	gi|257051672|ref|YP_003129505.1|	-	1.1e-26	94.1	0.0	1.3e-26	93.9	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|257051672|ref|YP_003129505.1|	-	2e-14	53.8	0.0	2.6e-14	53.4	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_4	PF13420.7	gi|257051672|ref|YP_003129505.1|	-	7.2e-12	45.7	0.0	8.5e-12	45.5	0.0	1.0	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.6	gi|257051672|ref|YP_003129505.1|	-	2.5e-11	43.4	0.3	2e-06	27.5	0.0	2.0	2	0	0	2	2	2	2	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|257051672|ref|YP_003129505.1|	-	5e-05	23.2	0.0	6.6e-05	22.8	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|257051672|ref|YP_003129505.1|	-	0.0002	21.2	0.0	0.00038	20.4	0.0	1.4	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_7	PF13508.7	gi|257051672|ref|YP_003129505.1|	-	0.0026	18.1	0.0	0.0045	17.4	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
GNAT_acetyltran	PF12746.7	gi|257051672|ref|YP_003129505.1|	-	0.094	12.3	0.0	0.14	11.7	0.0	1.2	1	0	0	1	1	1	0	GNAT	acetyltransferase
RIO1	PF01163.22	gi|257051673|ref|YP_003129506.1|	-	5.5e-11	42.4	0.0	9.9e-11	41.6	0.0	1.3	1	0	0	1	1	1	1	RIO1	family
Pkinase	PF00069.25	gi|257051673|ref|YP_003129506.1|	-	1.5e-06	27.8	0.0	2.1e-06	27.3	0.0	1.1	1	0	0	1	1	1	1	Protein	kinase	domain
APH	PF01636.23	gi|257051673|ref|YP_003129506.1|	-	9.3e-06	25.7	1.9	0.046	13.6	0.9	2.2	1	1	1	2	2	2	2	Phosphotransferase	enzyme	family
Kdo	PF06293.14	gi|257051673|ref|YP_003129506.1|	-	3.8e-05	23.2	0.1	0.00019	20.8	0.1	1.9	1	1	0	1	1	1	1	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
Fructosamin_kin	PF03881.14	gi|257051673|ref|YP_003129506.1|	-	0.012	14.8	0.1	1.3	8.1	0.0	2.2	1	1	1	2	2	2	0	Fructosamine	kinase
Kinase-PolyVal	PF18762.1	gi|257051673|ref|YP_003129506.1|	-	0.035	14.1	0.0	0.057	13.4	0.0	1.2	1	0	0	1	1	1	0	Serine/Threonine/Tyrosine	Kinase	found	in	polyvalent	proteins
EamA	PF00892.20	gi|257051674|ref|YP_003129507.1|	-	3.3e-29	101.8	34.0	1.3e-14	54.6	12.8	2.0	2	0	0	2	2	2	2	EamA-like	transporter	family
TPT	PF03151.16	gi|257051674|ref|YP_003129507.1|	-	0.068	12.5	12.0	0.083	12.2	2.0	2.1	2	0	0	2	2	2	0	Triose-phosphate	Transporter	family
Polyketide_cyc2	PF10604.9	gi|257051675|ref|YP_003129508.1|	-	1.4e-10	41.6	1.4	1.5e-10	41.5	1.4	1.0	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
Polyketide_cyc	PF03364.20	gi|257051675|ref|YP_003129508.1|	-	2.9e-09	37.2	0.0	3.7e-09	36.9	0.0	1.1	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
ELFV_dehydrog	PF00208.21	gi|257051676|ref|YP_003129509.1|	-	3e-68	230.1	0.3	3.9e-68	229.8	0.3	1.1	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
ELFV_dehydrog_N	PF02812.18	gi|257051676|ref|YP_003129509.1|	-	7e-55	184.4	0.0	1.1e-54	183.7	0.0	1.3	1	0	0	1	1	1	1	Glu/Leu/Phe/Val	dehydrogenase,	dimerisation	domain
2-Hacid_dh_C	PF02826.19	gi|257051676|ref|YP_003129509.1|	-	0.014	14.8	1.1	0.042	13.2	0.0	2.1	2	0	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Oxidored_nitro	PF00148.19	gi|257051676|ref|YP_003129509.1|	-	0.049	12.4	0.1	0.077	11.7	0.1	1.2	1	0	0	1	1	1	0	Nitrogenase	component	1	type	Oxidoreductase
DUF1028	PF06267.12	gi|257051677|ref|YP_003129510.1|	-	2e-64	216.9	0.0	2.4e-64	216.7	0.0	1.1	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF1028)
TMEMspv1-c74-12	PF11044.8	gi|257051678|ref|YP_003129511.1|	-	0.05	13.6	4.4	0.11	12.5	0.4	2.1	2	0	0	2	2	2	0	Plectrovirus	spv1-c74	ORF	12	transmembrane	protein
NDUF_B12	PF08122.12	gi|257051679|ref|YP_003129512.1|	-	0.053	13.6	0.4	18	5.5	0.0	2.8	2	0	0	2	2	2	0	NADH-ubiquinone	oxidoreductase	B12	subunit	family
PAP2	PF01569.21	gi|257051679|ref|YP_003129512.1|	-	2.9	7.7	16.9	1.8	8.3	11.9	2.6	2	1	0	2	2	2	0	PAP2	superfamily
MarR_2	PF12802.7	gi|257051680|ref|YP_003129513.1|	-	2.4e-07	30.6	0.0	3.4e-07	30.0	0.0	1.2	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|257051680|ref|YP_003129513.1|	-	5.6e-06	26.1	0.0	8.6e-06	25.6	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|257051680|ref|YP_003129513.1|	-	1.8e-05	24.4	0.1	3e-05	23.7	0.1	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Rrf2	PF02082.20	gi|257051680|ref|YP_003129513.1|	-	0.00037	20.8	0.0	0.00056	20.2	0.0	1.2	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_Crp_2	PF13545.6	gi|257051680|ref|YP_003129513.1|	-	0.0028	17.6	0.0	0.0034	17.3	0.0	1.2	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
MarR	PF01047.22	gi|257051680|ref|YP_003129513.1|	-	0.0062	16.4	0.0	0.0095	15.9	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|257051680|ref|YP_003129513.1|	-	0.0095	16.0	0.0	0.012	15.7	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
Sulfolobus_pRN	PF05584.11	gi|257051680|ref|YP_003129513.1|	-	0.011	15.7	0.0	0.013	15.5	0.0	1.2	1	0	0	1	1	1	0	Sulfolobus	plasmid	regulatory	protein
HTH_27	PF13463.6	gi|257051680|ref|YP_003129513.1|	-	0.028	14.9	0.0	0.038	14.5	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_24	PF13412.6	gi|257051680|ref|YP_003129513.1|	-	0.044	13.4	0.0	0.067	12.8	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Fe_dep_repress	PF01325.19	gi|257051680|ref|YP_003129513.1|	-	0.17	12.1	0.0	0.32	11.2	0.0	1.4	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
TFIIE_alpha	PF02002.17	gi|257051680|ref|YP_003129513.1|	-	0.17	11.7	0.0	0.3	11.0	0.0	1.4	1	1	1	2	2	2	0	TFIIE	alpha	subunit
DUF3906	PF13046.6	gi|257051680|ref|YP_003129513.1|	-	0.17	12.0	0.0	0.27	11.4	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3906)
HTH_5	PF01022.20	gi|257051680|ref|YP_003129513.1|	-	0.21	11.5	0.0	0.29	11.0	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
FG-GAP_2	PF14312.6	gi|257051681|ref|YP_003129514.1|	-	5.6e-109	356.3	48.7	3.3e-17	62.5	1.0	7.1	7	0	0	7	7	7	7	FG-GAP	repeat
ydhR	PF08803.11	gi|257051681|ref|YP_003129514.1|	-	2.3e-05	24.2	3.8	17	5.4	0.0	6.2	7	0	0	7	7	7	2	Putative	mono-oxygenase	ydhR
FG-GAP	PF01839.23	gi|257051681|ref|YP_003129514.1|	-	7.4e-05	22.8	8.3	20	5.5	0.0	7.5	7	0	0	7	7	7	1	FG-GAP	repeat
Viral_DNA_bi	PF02236.17	gi|257051681|ref|YP_003129514.1|	-	0.00019	21.6	0.1	21	5.4	0.0	5.2	5	0	0	5	5	5	1	Viral	DNA-binding	protein,	all	alpha	domain
Kelch_3	PF13415.6	gi|257051681|ref|YP_003129514.1|	-	4.5	7.7	9.8	73	3.8	0.1	5.5	6	0	0	6	6	6	0	Galactose	oxidase,	central	domain
Fer2	PF00111.27	gi|257051683|ref|YP_003129516.1|	-	1.3e-11	44.3	0.8	2e-11	43.7	0.8	1.3	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_4	PF13510.6	gi|257051683|ref|YP_003129516.1|	-	0.028	14.4	0.0	0.056	13.5	0.0	1.5	1	0	0	1	1	1	0	2Fe-2S	iron-sulfur	cluster	binding	domain
Thiolase_N	PF00108.23	gi|257051684|ref|YP_003129517.1|	-	9e-32	110.5	3.3	5.4e-31	107.9	1.5	2.4	2	1	0	2	2	2	1	Thiolase,	N-terminal	domain
ketoacyl-synt	PF00109.26	gi|257051684|ref|YP_003129517.1|	-	2e-10	40.7	8.7	3.4e-09	36.7	2.1	3.3	2	2	1	4	4	4	2	Beta-ketoacyl	synthase,	N-terminal	domain
Thiolase_C	PF02803.18	gi|257051684|ref|YP_003129517.1|	-	5.4e-08	32.5	0.1	5.4e-08	32.5	0.1	2.5	3	1	1	4	4	4	1	Thiolase,	C-terminal	domain
Ketoacyl-synt_C	PF02801.22	gi|257051684|ref|YP_003129517.1|	-	0.0013	18.8	0.8	0.023	14.7	0.7	3.0	2	1	0	2	2	2	1	Beta-ketoacyl	synthase,	C-terminal	domain
OB_aCoA_assoc	PF01796.17	gi|257051685|ref|YP_003129518.1|	-	9.7e-09	35.1	0.8	1.7e-08	34.3	0.8	1.4	1	0	0	1	1	1	1	DUF35	OB-fold	domain,	acyl-CoA-associated
DUF35_N	PF12172.8	gi|257051685|ref|YP_003129518.1|	-	0.00019	21.2	0.2	0.00032	20.5	0.2	1.4	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Ribosomal_L19	PF01245.20	gi|257051685|ref|YP_003129518.1|	-	0.063	13.2	0.0	0.092	12.7	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L19
AICARFT_IMPCHas	PF01808.18	gi|257051686|ref|YP_003129519.1|	-	2.4e-87	293.1	0.0	3.3e-87	292.7	0.0	1.1	1	0	0	1	1	1	1	AICARFT/IMPCHase	bienzyme
Formyl_trans_N	PF00551.19	gi|257051686|ref|YP_003129519.1|	-	3.8e-44	150.6	0.0	8.1e-44	149.5	0.0	1.6	2	0	0	2	2	2	1	Formyl	transferase
LPD22	PF18834.1	gi|257051686|ref|YP_003129519.1|	-	0.049	13.8	0.2	0.3	11.3	0.1	2.2	2	0	0	2	2	2	0	Large	polyvalent	protein	associated	domain	22
Ribosomal_L11	PF00298.19	gi|257051686|ref|YP_003129519.1|	-	0.058	13.9	0.3	0.11	13.0	0.3	1.4	1	0	0	1	1	1	0	Ribosomal	protein	L11,	RNA	binding	domain
UPF0688	PF15772.5	gi|257051687|ref|YP_003129520.1|	-	0.055	13.7	7.3	0.17	12.1	0.0	2.1	2	0	0	2	2	2	0	UPF0688	family
LPAM_1	PF08139.12	gi|257051687|ref|YP_003129520.1|	-	0.085	13.4	2.0	0.15	12.6	2.0	1.4	1	0	0	1	1	1	0	Prokaryotic	membrane	lipoprotein	lipid	attachment	site
SMYLE_N	PF18615.1	gi|257051687|ref|YP_003129520.1|	-	0.48	9.9	1.7	0.8	9.2	1.7	1.3	1	0	0	1	1	1	0	Short	myomegalin-like	EB1	binding	proteins,	N-terminal	domain
Shisa	PF13908.6	gi|257051688|ref|YP_003129521.1|	-	0.078	13.2	0.5	0.15	12.3	0.5	1.4	1	0	0	1	1	1	0	Wnt	and	FGF	inhibitory	regulator
Mucin	PF01456.17	gi|257051688|ref|YP_003129521.1|	-	2.5	8.1	24.5	0.32	11.0	19.5	2.0	2	0	0	2	2	2	0	Mucin-like	glycoprotein
Pterin_bind	PF00809.22	gi|257051689|ref|YP_003129522.1|	-	4.5e-81	272.1	0.6	6.9e-81	271.5	0.6	1.3	1	0	0	1	1	1	1	Pterin	binding	enzyme
Mur_ligase_M	PF08245.12	gi|257051689|ref|YP_003129522.1|	-	1.1e-12	48.3	0.0	1.9e-12	47.6	0.0	1.4	1	0	0	1	1	1	1	Mur	ligase	middle	domain
Mur_ligase_C	PF02875.21	gi|257051689|ref|YP_003129522.1|	-	2.6e-08	34.0	0.0	8.7e-08	32.3	0.0	2.0	1	0	0	1	1	1	1	Mur	ligase	family,	glutamate	ligase	domain
PEP_mutase	PF13714.6	gi|257051689|ref|YP_003129522.1|	-	0.0025	17.3	1.9	0.26	10.7	0.0	3.0	3	0	0	3	3	3	2	Phosphoenolpyruvate	phosphomutase
T2SSM	PF04612.12	gi|257051689|ref|YP_003129522.1|	-	0.078	13.0	0.0	0.17	11.9	0.0	1.5	1	0	0	1	1	1	0	Type	II	secretion	system	(T2SS),	protein	M
Glyco_transf_4	PF13439.6	gi|257051690|ref|YP_003129523.1|	-	4.6e-22	78.8	0.4	8.6e-22	77.9	0.4	1.5	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|257051690|ref|YP_003129523.1|	-	9.3e-22	78.2	8.4	9.3e-22	78.2	8.4	2.3	2	1	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glycos_transf_1	PF00534.20	gi|257051690|ref|YP_003129523.1|	-	6.3e-16	58.4	0.0	9.2e-16	57.9	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|257051690|ref|YP_003129523.1|	-	3.6e-12	46.9	0.0	9.9e-12	45.4	0.0	1.7	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_4_2	PF13477.6	gi|257051690|ref|YP_003129523.1|	-	0.00014	21.9	0.0	0.00038	20.5	0.0	1.7	2	0	0	2	2	2	1	Glycosyl	transferase	4-like
Regnase_1_C	PF18561.1	gi|257051690|ref|YP_003129523.1|	-	0.13	12.1	0.0	0.33	10.7	0.0	1.7	1	0	0	1	1	1	0	Endoribonuclease	Regnase	1/	ZC3H12	C-terminal	domain
Fe-ADH_2	PF13685.6	gi|257051691|ref|YP_003129524.1|	-	3.1e-65	220.3	1.3	4.2e-65	219.9	1.3	1.2	1	0	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
Fe-ADH	PF00465.19	gi|257051691|ref|YP_003129524.1|	-	1.1e-22	80.4	5.2	4.6e-22	78.3	5.2	1.7	1	1	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
DHQ_synthase	PF01761.20	gi|257051691|ref|YP_003129524.1|	-	3.3e-11	42.9	0.1	6.5e-11	41.9	0.1	1.4	1	1	0	1	1	1	1	3-dehydroquinate	synthase
AP_endonuc_2	PF01261.24	gi|257051691|ref|YP_003129524.1|	-	0.025	14.0	0.1	0.14	11.5	0.1	2.0	1	1	0	1	1	1	0	Xylose	isomerase-like	TIM	barrel
Ferritin	PF00210.24	gi|257051692|ref|YP_003129525.1|	-	2.5e-21	76.1	1.9	2.7e-21	76.0	1.9	1.0	1	0	0	1	1	1	1	Ferritin-like	domain
Rubrerythrin	PF02915.17	gi|257051692|ref|YP_003129525.1|	-	1.2e-05	25.7	2.1	2.2e-05	24.9	2.1	1.4	1	1	0	1	1	1	1	Rubrerythrin
DUF296	PF03479.15	gi|257051693|ref|YP_003129526.1|	-	6.7e-18	65.0	0.0	8.3e-18	64.7	0.0	1.1	1	0	0	1	1	1	1	Plants	and	Prokaryotes	Conserved	(PCC)	domain
DUF4820	PF16091.5	gi|257051694|ref|YP_003129527.1|	-	0.06	12.7	0.0	0.1	11.9	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4820)
RraA-like	PF03737.15	gi|257051695|ref|YP_003129528.1|	-	2.1e-22	79.9	0.0	2.9e-22	79.4	0.0	1.2	1	0	0	1	1	1	1	Aldolase/RraA
Pyr_redox_2	PF07992.14	gi|257051696|ref|YP_003129529.1|	-	9.5e-32	110.4	0.5	3.3e-31	108.6	0.5	1.9	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Fer4_20	PF14691.6	gi|257051696|ref|YP_003129529.1|	-	6.8e-22	77.4	0.0	1.1e-21	76.7	0.0	1.3	1	0	0	1	1	1	1	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
NAD_binding_8	PF13450.6	gi|257051696|ref|YP_003129529.1|	-	9.3e-12	45.0	0.1	2.2e-10	40.6	0.0	2.8	3	0	0	3	3	3	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox	PF00070.27	gi|257051696|ref|YP_003129529.1|	-	1.9e-11	44.4	0.3	1.9e-07	31.5	0.1	2.9	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|257051696|ref|YP_003129529.1|	-	2.5e-10	40.1	0.0	0.00084	18.7	0.0	3.3	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
Amino_oxidase	PF01593.24	gi|257051696|ref|YP_003129529.1|	-	9.5e-09	35.0	0.2	7.3e-07	28.8	0.1	2.4	2	0	0	2	2	2	1	Flavin	containing	amine	oxidoreductase
FAD_oxidored	PF12831.7	gi|257051696|ref|YP_003129529.1|	-	1.7e-07	30.9	3.6	2.8e-06	27.0	0.0	2.3	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|257051696|ref|YP_003129529.1|	-	2.1e-07	30.0	0.4	1e-05	24.5	0.1	2.2	2	0	0	2	2	2	1	HI0933-like	protein
FAD_binding_3	PF01494.19	gi|257051696|ref|YP_003129529.1|	-	8.2e-07	28.6	0.4	1.8e-06	27.5	0.0	1.8	2	0	0	2	2	2	1	FAD	binding	domain
Thi4	PF01946.17	gi|257051696|ref|YP_003129529.1|	-	2.1e-06	27.1	0.5	1.6e-05	24.3	0.0	2.1	2	0	0	2	2	2	1	Thi4	family
FAD_binding_2	PF00890.24	gi|257051696|ref|YP_003129529.1|	-	2.7e-06	26.7	5.5	2.7e-05	23.4	0.2	3.1	3	0	0	3	3	3	1	FAD	binding	domain
NAD_binding_7	PF13241.6	gi|257051696|ref|YP_003129529.1|	-	2.6e-05	24.6	0.0	0.072	13.5	0.0	2.4	2	0	0	2	2	2	2	Putative	NAD(P)-binding
DAO	PF01266.24	gi|257051696|ref|YP_003129529.1|	-	3.3e-05	23.6	0.2	3.3e-05	23.6	0.2	2.6	2	1	0	3	3	3	1	FAD	dependent	oxidoreductase
Lycopene_cycl	PF05834.12	gi|257051696|ref|YP_003129529.1|	-	4.9e-05	22.6	0.0	0.0072	15.4	0.0	2.3	2	0	0	2	2	2	1	Lycopene	cyclase	protein
AlaDh_PNT_C	PF01262.21	gi|257051696|ref|YP_003129529.1|	-	5.4e-05	22.6	0.2	0.075	12.3	0.1	2.4	2	0	0	2	2	2	2	Alanine	dehydrogenase/PNT,	C-terminal	domain
GIDA	PF01134.22	gi|257051696|ref|YP_003129529.1|	-	6.4e-05	22.2	0.2	0.0045	16.1	0.0	2.2	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
FMO-like	PF00743.19	gi|257051696|ref|YP_003129529.1|	-	0.00017	20.1	0.0	0.0051	15.3	0.0	2.1	2	0	0	2	2	2	1	Flavin-binding	monooxygenase-like
K_oxygenase	PF13434.6	gi|257051696|ref|YP_003129529.1|	-	0.00048	19.4	0.0	0.087	11.9	0.0	2.3	2	0	0	2	2	2	1	L-lysine	6-monooxygenase	(NADPH-requiring)
NAD_binding_9	PF13454.6	gi|257051696|ref|YP_003129529.1|	-	0.0025	17.8	0.0	0.019	15.0	0.0	2.3	2	0	0	2	2	2	1	FAD-NAD(P)-binding
YjeF_N	PF03853.15	gi|257051696|ref|YP_003129529.1|	-	0.0086	16.0	0.1	1.9	8.4	0.0	2.3	2	0	0	2	2	2	1	YjeF-related	protein	N-terminus
TrkA_N	PF02254.18	gi|257051696|ref|YP_003129529.1|	-	0.011	15.9	0.2	0.4	11.0	0.0	2.6	3	0	0	3	3	2	0	TrkA-N	domain
Trp_halogenase	PF04820.14	gi|257051696|ref|YP_003129529.1|	-	0.017	14.0	0.1	0.23	10.2	0.1	2.1	2	0	0	2	2	2	0	Tryptophan	halogenase
DJ-1_PfpI	PF01965.24	gi|257051696|ref|YP_003129529.1|	-	0.019	14.8	0.6	0.14	11.9	0.1	2.4	3	0	0	3	3	3	0	DJ-1/PfpI	family
3HCDH_N	PF02737.18	gi|257051696|ref|YP_003129529.1|	-	0.02	14.8	1.0	0.031	14.2	0.0	1.8	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
AdoHcyase_NAD	PF00670.21	gi|257051696|ref|YP_003129529.1|	-	0.038	14.1	0.5	0.53	10.3	0.1	2.2	2	0	0	2	2	2	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
Rossmann-like	PF10727.9	gi|257051696|ref|YP_003129529.1|	-	0.045	13.6	0.0	0.1	12.4	0.0	1.6	1	0	0	1	1	1	0	Rossmann-like	domain
2-Hacid_dh_C	PF02826.19	gi|257051696|ref|YP_003129529.1|	-	0.052	12.9	0.0	2	7.8	0.0	2.2	2	0	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
ApbA	PF02558.16	gi|257051696|ref|YP_003129529.1|	-	0.12	12.0	0.2	0.33	10.6	0.2	1.8	1	1	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
F420_oxidored	PF03807.17	gi|257051696|ref|YP_003129529.1|	-	0.19	12.3	1.2	2	9.0	0.1	2.9	3	0	0	3	3	3	0	NADP	oxidoreductase	coenzyme	F420-dependent
Shikimate_DH	PF01488.20	gi|257051696|ref|YP_003129529.1|	-	0.2	11.7	0.0	6.9	6.7	0.0	2.3	2	0	0	2	2	2	0	Shikimate	/	quinate	5-dehydrogenase
Fer4_9	PF13187.6	gi|257051696|ref|YP_003129529.1|	-	0.85	9.8	5.3	0.85	9.8	1.2	1.9	1	1	2	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|257051696|ref|YP_003129529.1|	-	6.1	7.6	7.1	1.7	9.3	0.7	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
GATase_2	PF00310.21	gi|257051697|ref|YP_003129530.1|	-	1.2e-160	534.9	0.0	1.5e-160	534.5	0.0	1.1	1	0	0	1	1	1	1	Glutamine	amidotransferases	class-II
Glu_synthase	PF01645.17	gi|257051697|ref|YP_003129530.1|	-	2e-148	494.4	0.1	2e-147	491.2	0.0	2.1	2	0	0	2	2	2	1	Conserved	region	in	glutamate	synthase
Glu_syn_central	PF04898.14	gi|257051697|ref|YP_003129530.1|	-	1.2e-115	385.8	0.0	2.5e-114	381.5	0.0	2.2	2	0	0	2	2	2	1	Glutamate	synthase	central	domain
GXGXG	PF01493.19	gi|257051697|ref|YP_003129530.1|	-	1.3e-77	259.7	9.2	2.2e-77	259.0	9.2	1.4	1	0	0	1	1	1	1	GXGXG	motif
FMN_dh	PF01070.18	gi|257051697|ref|YP_003129530.1|	-	0.00076	18.6	1.7	0.00076	18.6	1.7	2.5	3	0	0	3	3	3	1	FMN-dependent	dehydrogenase
Acetyltransf_10	PF13673.7	gi|257051698|ref|YP_003129531.1|	-	1.8e-10	40.8	0.0	2e-10	40.7	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|257051698|ref|YP_003129531.1|	-	4.1e-10	39.9	0.0	5.7e-10	39.5	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|257051698|ref|YP_003129531.1|	-	3e-06	27.4	0.0	3.7e-06	27.2	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_13	PF13880.6	gi|257051698|ref|YP_003129531.1|	-	0.0007	19.5	0.0	0.0011	18.9	0.0	1.3	1	0	0	1	1	1	1	ESCO1/2	acetyl-transferase
FR47	PF08445.10	gi|257051698|ref|YP_003129531.1|	-	0.0028	17.6	0.0	0.0046	16.9	0.0	1.5	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_9	PF13527.7	gi|257051698|ref|YP_003129531.1|	-	0.0028	17.7	0.0	0.0038	17.3	0.0	1.3	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.7	gi|257051698|ref|YP_003129531.1|	-	0.005	17.5	0.0	0.0062	17.2	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|257051698|ref|YP_003129531.1|	-	0.012	15.7	0.0	0.018	15.2	0.0	1.3	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
Acetyltransf_15	PF17013.5	gi|257051698|ref|YP_003129531.1|	-	0.066	12.7	0.0	0.079	12.4	0.0	1.2	1	0	0	1	1	1	0	Putative	acetyl-transferase
GNAT_acetyltran	PF12746.7	gi|257051698|ref|YP_003129531.1|	-	0.15	11.6	0.0	0.21	11.1	0.0	1.2	1	0	0	1	1	1	0	GNAT	acetyltransferase
Mem_trans	PF03547.18	gi|257051700|ref|YP_003129533.1|	-	1.6e-21	76.2	14.7	1.1e-13	50.4	11.3	2.0	1	1	1	2	2	2	2	Membrane	transport	protein
SBF	PF01758.16	gi|257051700|ref|YP_003129533.1|	-	0.0003	20.5	7.7	0.0003	20.5	7.7	2.5	1	1	3	4	4	4	1	Sodium	Bile	acid	symporter	family
DUF2781	PF10914.8	gi|257051700|ref|YP_003129533.1|	-	6.2	7.2	9.9	2.1	8.7	3.4	2.9	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2781)
Flavoprotein	PF02441.19	gi|257051701|ref|YP_003129534.1|	-	9.9e-21	74.1	0.0	1.2e-20	73.8	0.0	1.1	1	0	0	1	1	1	1	Flavoprotein
DUF3618	PF12277.8	gi|257051701|ref|YP_003129534.1|	-	0.17	12.2	0.9	0.17	12.2	0.9	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3618)
DUF126	PF01989.16	gi|257051702|ref|YP_003129535.1|	-	2.3e-33	113.8	0.0	3.6e-33	113.2	0.0	1.3	1	0	0	1	1	1	1	Aconitase	X	swivel	domain
DUF521	PF04412.13	gi|257051703|ref|YP_003129536.1|	-	2.4e-149	497.4	0.0	2.7e-149	497.3	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF521)
UbiD	PF01977.16	gi|257051704|ref|YP_003129537.1|	-	7e-83	278.7	3.9	8.6e-83	278.4	3.9	1.0	1	0	0	1	1	1	1	3-octaprenyl-4-hydroxybenzoate	carboxy-lyase
tRNA-synt_2c	PF01411.19	gi|257051705|ref|YP_003129538.1|	-	1.3e-14	53.7	0.0	1.7e-14	53.3	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(A)
tRNA_SAD	PF07973.14	gi|257051705|ref|YP_003129538.1|	-	2e-13	50.2	0.2	3.7e-13	49.3	0.2	1.5	1	0	0	1	1	1	1	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
DUF2371	PF10177.9	gi|257051706|ref|YP_003129539.1|	-	0.0053	16.9	2.1	0.27	11.4	0.0	2.1	2	0	0	2	2	2	2	Uncharacterised	conserved	protein	(DUF2371)
DUF202	PF02656.15	gi|257051706|ref|YP_003129539.1|	-	0.6	10.6	3.6	2.6	8.5	0.5	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF202)
Methyltransf_11	PF08241.12	gi|257051707|ref|YP_003129540.1|	-	3.9e-09	37.1	0.2	2.8e-08	34.3	0.2	2.1	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|257051707|ref|YP_003129540.1|	-	1.1e-07	32.4	0.0	7.5e-07	29.8	0.0	2.3	3	0	0	3	3	2	1	Methyltransferase	domain
MTS	PF05175.14	gi|257051707|ref|YP_003129540.1|	-	1.3e-06	28.1	0.0	1.2e-05	25.0	0.0	2.1	2	0	0	2	2	2	1	Methyltransferase	small	domain
Methyltransf_23	PF13489.6	gi|257051707|ref|YP_003129540.1|	-	1.4e-06	28.3	0.0	3.3e-06	27.0	0.0	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|257051707|ref|YP_003129540.1|	-	5.5e-06	26.3	0.0	1.2e-05	25.1	0.0	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|257051707|ref|YP_003129540.1|	-	3.2e-05	24.6	0.1	0.00015	22.5	0.1	2.1	2	1	0	2	2	2	1	Methyltransferase	domain
Methyltransf_32	PF13679.6	gi|257051707|ref|YP_003129540.1|	-	0.00036	20.6	0.0	0.00056	19.9	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
PrmA	PF06325.13	gi|257051707|ref|YP_003129540.1|	-	0.00065	19.2	0.8	0.00093	18.7	0.8	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
TrkA_N	PF02254.18	gi|257051707|ref|YP_003129540.1|	-	0.00077	19.7	0.1	0.19	12.0	0.0	2.2	2	0	0	2	2	2	1	TrkA-N	domain
UPF0146	PF03686.13	gi|257051707|ref|YP_003129540.1|	-	0.0062	16.4	0.0	0.01	15.7	0.0	1.3	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0146)
MetW	PF07021.12	gi|257051707|ref|YP_003129540.1|	-	0.012	15.2	0.0	0.019	14.6	0.0	1.2	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
PCMT	PF01135.19	gi|257051707|ref|YP_003129540.1|	-	0.014	15.1	0.1	0.027	14.2	0.1	1.4	2	0	0	2	2	2	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
CMAS	PF02353.20	gi|257051707|ref|YP_003129540.1|	-	0.019	14.3	0.0	0.23	10.7	0.0	1.9	2	0	0	2	2	2	0	Mycolic	acid	cyclopropane	synthetase
Methyltransf_18	PF12847.7	gi|257051707|ref|YP_003129540.1|	-	0.019	14.9	0.0	0.034	14.1	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
TPMT	PF05724.11	gi|257051707|ref|YP_003129540.1|	-	0.036	13.7	0.1	0.066	12.9	0.1	1.4	1	0	0	1	1	1	0	Thiopurine	S-methyltransferase	(TPMT)
Met_10	PF02475.16	gi|257051707|ref|YP_003129540.1|	-	0.11	12.3	0.0	0.15	11.8	0.0	1.2	1	0	0	1	1	1	0	Met-10+	like-protein
UDPG_MGDP_dh_N	PF03721.14	gi|257051707|ref|YP_003129540.1|	-	0.14	11.8	0.0	0.21	11.2	0.0	1.2	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Methyltransf_10	PF05971.12	gi|257051707|ref|YP_003129540.1|	-	0.14	11.5	0.2	0.42	9.9	0.2	1.7	1	1	0	1	1	1	0	RNA	methyltransferase
RrnaAD	PF00398.20	gi|257051708|ref|YP_003129541.1|	-	4e-45	154.0	0.0	5.1e-45	153.6	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_25	PF13649.6	gi|257051708|ref|YP_003129541.1|	-	0.00023	21.8	0.0	0.00058	20.5	0.0	1.6	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|257051708|ref|YP_003129541.1|	-	0.0078	16.8	0.0	0.017	15.8	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
NodS	PF05401.11	gi|257051708|ref|YP_003129541.1|	-	0.16	11.5	0.0	0.25	11.0	0.0	1.3	1	0	0	1	1	1	0	Nodulation	protein	S	(NodS)
DUF655	PF04919.12	gi|257051709|ref|YP_003129542.1|	-	1.3e-61	207.7	0.1	1.5e-61	207.5	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF655)
HHH_6	PF14579.6	gi|257051709|ref|YP_003129542.1|	-	0.00068	19.8	0.0	0.0022	18.2	0.0	1.9	1	1	0	1	1	1	1	Helix-hairpin-helix	motif
HHH_3	PF12836.7	gi|257051709|ref|YP_003129542.1|	-	0.0012	19.1	0.0	0.0026	18.0	0.0	1.6	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
RNA_pol_Rpb4	PF03874.16	gi|257051710|ref|YP_003129543.1|	-	8.5e-12	45.5	1.4	1.1e-11	45.1	1.4	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb4
Ribosomal_L21e	PF01157.18	gi|257051711|ref|YP_003129544.1|	-	1.5e-30	105.0	0.0	1.7e-30	104.9	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L21e
EF1_GNE	PF00736.19	gi|257051712|ref|YP_003129545.1|	-	9.5e-20	70.6	0.1	1e-19	70.5	0.1	1.0	1	0	0	1	1	1	1	EF-1	guanine	nucleotide	exchange	domain
DUF1610	PF07754.11	gi|257051713|ref|YP_003129546.1|	-	4.1e-06	26.7	5.0	4.1e-06	26.7	5.0	2.9	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF1610)
zf-Mss51	PF13824.6	gi|257051713|ref|YP_003129546.1|	-	0.00045	20.2	13.6	0.052	13.7	2.8	3.0	1	1	1	2	2	2	2	Zinc-finger	of	mitochondrial	splicing	suppressor	51
C1_2	PF03107.16	gi|257051713|ref|YP_003129546.1|	-	0.0007	19.9	11.2	0.089	13.1	1.2	2.1	1	1	1	2	2	2	2	C1	domain
Zn_Tnp_IS91	PF14319.6	gi|257051713|ref|YP_003129546.1|	-	0.00081	19.4	10.1	0.0013	18.7	10.1	1.3	1	1	0	1	1	1	1	Transposase	zinc-binding	domain
OrfB_Zn_ribbon	PF07282.11	gi|257051713|ref|YP_003129546.1|	-	0.00093	19.1	10.4	0.0075	16.2	5.8	2.1	1	1	1	2	2	2	1	Putative	transposase	DNA-binding	domain
Rhodanese_C	PF12368.8	gi|257051713|ref|YP_003129546.1|	-	0.0047	17.3	9.3	0.0052	17.1	9.3	1.1	1	0	0	1	1	1	1	Rhodanase	C-terminal
zf-ribbon_3	PF13248.6	gi|257051713|ref|YP_003129546.1|	-	0.0078	15.6	14.3	0.44	10.0	0.2	4.1	4	0	0	4	4	4	1	zinc-ribbon	domain
DNA_RNApol_7kD	PF03604.13	gi|257051713|ref|YP_003129546.1|	-	0.013	15.2	1.4	0.013	15.2	1.4	3.0	1	1	1	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-ACC	PF17848.1	gi|257051713|ref|YP_003129546.1|	-	0.015	15.4	13.5	0.018	15.1	0.2	3.9	3	1	1	4	4	4	0	Acetyl-coA	carboxylase	zinc	finger	domain
zf-CHY	PF05495.12	gi|257051713|ref|YP_003129546.1|	-	0.017	15.6	11.7	0.32	11.5	2.2	2.1	1	1	1	2	2	2	0	CHY	zinc	finger
zf-C2H2	PF00096.26	gi|257051713|ref|YP_003129546.1|	-	0.022	15.2	11.9	3.5	8.3	0.7	3.4	3	0	0	3	3	3	0	Zinc	finger,	C2H2	type
C1_1	PF00130.22	gi|257051713|ref|YP_003129546.1|	-	0.027	14.3	1.8	0.027	14.3	1.8	2.6	1	1	1	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
zf-H2C2_2	PF13465.6	gi|257051713|ref|YP_003129546.1|	-	0.034	14.6	15.7	1.8	9.2	0.4	4.0	2	1	2	4	4	4	0	Zinc-finger	double	domain
HypA	PF01155.19	gi|257051713|ref|YP_003129546.1|	-	0.041	13.9	11.8	0.053	13.6	1.3	2.1	1	1	1	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc_ribbon_10	PF10058.9	gi|257051713|ref|YP_003129546.1|	-	0.065	13.0	11.3	2.5	7.9	0.1	3.9	2	1	2	4	4	4	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
NMDAR2_C	PF10565.9	gi|257051713|ref|YP_003129546.1|	-	0.1	11.4	5.9	0.12	11.3	5.9	1.0	1	0	0	1	1	1	0	N-methyl	D-aspartate	receptor	2B3	C-terminus
UPF0547	PF10571.9	gi|257051713|ref|YP_003129546.1|	-	0.12	12.5	20.7	0.17	12.0	0.6	3.8	3	1	0	3	3	3	0	Uncharacterised	protein	family	UPF0547
zinc-ribbons_6	PF07191.12	gi|257051713|ref|YP_003129546.1|	-	0.12	12.3	12.1	1.8	8.6	12.1	2.1	1	1	0	1	1	1	0	zinc-ribbons
HscB_4_cys	PF18256.1	gi|257051713|ref|YP_003129546.1|	-	0.15	11.9	0.9	0.15	11.9	0.9	3.0	2	1	1	3	3	3	0	Co-chaperone	HscB	tetracysteine	metal	binding	motif
PhnA_Zn_Ribbon	PF08274.12	gi|257051713|ref|YP_003129546.1|	-	0.17	11.9	14.8	0.41	10.6	3.0	3.7	1	1	0	2	2	2	0	PhnA	Zinc-Ribbon
zinc_ribbon_2	PF13240.6	gi|257051713|ref|YP_003129546.1|	-	0.24	11.2	17.5	0.32	10.8	0.3	3.9	2	2	0	3	3	3	0	zinc-ribbon	domain
PolC_DP2	PF03833.13	gi|257051713|ref|YP_003129546.1|	-	0.28	9.0	7.9	0.31	8.9	7.9	1.0	1	0	0	1	1	1	0	DNA	polymerase	II	large	subunit	DP2
Zn-ribbon_8	PF09723.10	gi|257051713|ref|YP_003129546.1|	-	0.39	10.9	18.4	8.5	6.6	13.0	3.8	1	1	1	2	2	2	0	Zinc	ribbon	domain
zf_UBZ	PF18439.1	gi|257051713|ref|YP_003129546.1|	-	0.43	10.2	16.4	0.75	9.4	0.4	3.9	2	1	2	4	4	4	0	Ubiquitin-Binding	Zinc	Finger
FYVE_2	PF02318.16	gi|257051713|ref|YP_003129546.1|	-	0.56	10.4	7.1	0.63	10.3	7.1	1.1	1	0	0	1	1	1	0	FYVE-type	zinc	finger
zf-UBR	PF02207.20	gi|257051713|ref|YP_003129546.1|	-	0.64	10.2	12.2	1.5	9.1	5.4	2.6	1	1	1	2	2	2	0	Putative	zinc	finger	in	N-recognin	(UBR	box)
zf-HIT	PF04438.16	gi|257051713|ref|YP_003129546.1|	-	1.3	9.0	18.8	3.8	7.5	1.9	3.6	1	1	2	3	3	3	0	HIT	zinc	finger
TFIIS_C	PF01096.18	gi|257051713|ref|YP_003129546.1|	-	1.3	9.0	16.2	4.1	7.3	0.6	4.0	2	1	2	4	4	4	0	Transcription	factor	S-II	(TFIIS)
NMD3	PF04981.13	gi|257051713|ref|YP_003129546.1|	-	1.5	8.3	9.3	1.8	8.0	9.3	1.0	1	0	0	1	1	1	0	NMD3	family
zf-C2H2_11	PF16622.5	gi|257051713|ref|YP_003129546.1|	-	1.7	8.5	10.6	3.6	7.4	0.2	3.5	4	0	0	4	4	4	0	zinc-finger	C2H2-type
Rubredoxin_2	PF18073.1	gi|257051713|ref|YP_003129546.1|	-	1.7	8.5	17.2	2	8.2	0.1	3.9	4	0	0	4	4	4	0	Rubredoxin	metal	binding	domain
zinc_ribbon_4	PF13717.6	gi|257051713|ref|YP_003129546.1|	-	1.7	8.6	17.1	5.4	7.0	3.2	3.9	1	1	3	4	4	4	0	zinc-ribbon	domain
zf-C3HC4_3	PF13920.6	gi|257051713|ref|YP_003129546.1|	-	2.1	8.3	14.6	0.37	10.7	3.7	2.7	2	1	0	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
Ribosomal_L37ae	PF01780.19	gi|257051713|ref|YP_003129546.1|	-	2.8	8.1	11.6	9.2	6.4	2.3	3.2	1	1	1	2	2	2	0	Ribosomal	L37ae	protein	family
Zn_Tnp_IS1595	PF12760.7	gi|257051713|ref|YP_003129546.1|	-	3.4	7.7	16.9	2.2e+02	1.9	16.9	3.3	1	1	0	1	1	1	0	Transposase	zinc-ribbon	domain
DUF2752	PF10825.8	gi|257051713|ref|YP_003129546.1|	-	3.5	7.7	10.0	22	5.2	0.4	3.8	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF2752)
Zn_ribbon_SprT	PF17283.2	gi|257051713|ref|YP_003129546.1|	-	3.6	7.6	17.3	8	6.5	0.2	3.9	3	1	0	3	3	3	0	SprT-like	zinc	ribbon	domain
zf-RING_5	PF14634.6	gi|257051713|ref|YP_003129546.1|	-	4.2	7.4	14.2	42	4.2	13.6	2.7	1	1	1	2	2	2	0	zinc-RING	finger	domain
NRDD	PF13597.6	gi|257051713|ref|YP_003129546.1|	-	4.5	5.9	12.4	2	7.1	3.5	2.0	1	1	1	2	2	2	0	Anaerobic	ribonucleoside-triphosphate	reductase
A2L_zn_ribbon	PF08792.10	gi|257051713|ref|YP_003129546.1|	-	5.8	6.8	14.7	55	3.6	3.3	3.4	1	1	1	2	2	2	0	A2L	zinc	ribbon	domain
YacG	PF03884.14	gi|257051713|ref|YP_003129546.1|	-	7.5	6.4	12.9	1.5	8.6	0.6	3.3	1	1	2	3	3	3	0	DNA	gyrase	inhibitor	YacG
RNA_pol_L_2	PF13656.6	gi|257051714|ref|YP_003129547.1|	-	3.6e-17	61.9	0.0	4.4e-17	61.6	0.0	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
RNA_pol_L	PF01193.24	gi|257051714|ref|YP_003129547.1|	-	1.1e-05	24.7	0.0	2.4e-05	23.6	0.0	1.6	1	1	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
zinc_ribbon_13	PF09855.9	gi|257051715|ref|YP_003129548.1|	-	2.7e-28	97.9	0.6	3e-28	97.8	0.6	1.0	1	0	0	1	1	1	1	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
Lar_restr_allev	PF14354.6	gi|257051715|ref|YP_003129548.1|	-	0.00078	19.8	0.2	0.0011	19.3	0.2	1.3	1	0	0	1	1	1	1	Restriction	alleviation	protein	Lar
Zn_Tnp_IS1595	PF12760.7	gi|257051715|ref|YP_003129548.1|	-	0.0009	19.2	0.1	0.89	9.6	0.0	2.1	2	0	0	2	2	2	2	Transposase	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|257051715|ref|YP_003129548.1|	-	0.0018	17.6	1.6	0.64	9.5	0.1	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
Zn_Tnp_IS91	PF14319.6	gi|257051715|ref|YP_003129548.1|	-	0.0077	16.2	0.2	0.68	10.0	0.0	2.1	2	0	0	2	2	2	1	Transposase	zinc-binding	domain
TFIIS_C	PF01096.18	gi|257051715|ref|YP_003129548.1|	-	0.019	14.8	2.7	1.6	8.6	0.3	2.3	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
CpXC	PF14353.6	gi|257051715|ref|YP_003129548.1|	-	0.022	14.8	0.5	0.04	14.0	0.5	1.4	1	1	0	1	1	1	0	CpXC	protein
Elf1	PF05129.13	gi|257051715|ref|YP_003129548.1|	-	0.023	14.7	0.6	0.063	13.3	0.6	1.6	1	1	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
TF_Zn_Ribbon	PF08271.12	gi|257051715|ref|YP_003129548.1|	-	0.026	14.1	4.1	0.6	9.7	4.0	2.1	1	1	1	2	2	2	0	TFIIB	zinc-binding
DUF2387	PF09526.10	gi|257051715|ref|YP_003129548.1|	-	0.05	13.8	1.6	0.56	10.4	1.4	2.0	1	1	1	2	2	2	0	Probable	metal-binding	protein	(DUF2387)
Zn-ribbon_8	PF09723.10	gi|257051715|ref|YP_003129548.1|	-	0.051	13.7	0.7	2.9	8.1	0.2	2.2	2	0	0	2	2	2	0	Zinc	ribbon	domain
A2L_zn_ribbon	PF08792.10	gi|257051715|ref|YP_003129548.1|	-	0.062	13.0	1.5	7.7	6.4	0.2	2.2	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
Spt4	PF06093.13	gi|257051715|ref|YP_003129548.1|	-	0.064	13.4	1.1	2	8.6	0.1	2.0	1	1	1	2	2	2	0	Spt4/RpoE2	zinc	finger
DNA_RNApol_7kD	PF03604.13	gi|257051715|ref|YP_003129548.1|	-	0.082	12.6	2.5	0.83	9.4	0.0	2.2	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zinc_ribbon_4	PF13717.6	gi|257051715|ref|YP_003129548.1|	-	0.097	12.6	1.2	7.8	6.5	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|257051715|ref|YP_003129548.1|	-	0.098	12.6	2.6	1	9.3	2.6	2.0	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zinc_ribbon_2	PF13240.6	gi|257051715|ref|YP_003129548.1|	-	0.1	12.3	8.0	2.4	8.0	0.2	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-C2H2_3	PF13878.6	gi|257051715|ref|YP_003129548.1|	-	0.13	12.1	1.5	2.4	8.1	0.1	2.2	2	0	0	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
UPF0547	PF10571.9	gi|257051715|ref|YP_003129548.1|	-	0.15	12.1	4.3	3.3	7.9	0.7	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
DUF2225	PF09986.9	gi|257051715|ref|YP_003129548.1|	-	0.24	11.1	1.0	0.41	10.3	1.0	1.6	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2225)
zf-IS66	PF13005.7	gi|257051715|ref|YP_003129548.1|	-	0.25	11.8	3.7	5.9	7.4	4.6	2.1	1	1	1	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
zf-HYPF	PF07503.12	gi|257051715|ref|YP_003129548.1|	-	0.29	10.9	2.7	2.1	8.2	0.1	2.3	2	0	0	2	2	2	0	HypF	finger
Sensor	PF13796.6	gi|257051716|ref|YP_003129549.1|	-	0.029	14.4	0.0	0.03	14.4	0.0	1.0	1	0	0	1	1	1	0	Putative	sensor
His_biosynth	PF00977.21	gi|257051717|ref|YP_003129550.1|	-	4.3e-81	271.7	0.7	4.8e-81	271.6	0.7	1.0	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
Dus	PF01207.17	gi|257051717|ref|YP_003129550.1|	-	2.8e-07	30.0	0.1	8.6e-05	21.8	0.0	2.1	2	0	0	2	2	2	2	Dihydrouridine	synthase	(Dus)
ThiG	PF05690.14	gi|257051717|ref|YP_003129550.1|	-	2.9e-07	30.0	0.3	0.00015	21.1	0.1	2.1	2	0	0	2	2	2	2	Thiazole	biosynthesis	protein	ThiG
NMO	PF03060.15	gi|257051717|ref|YP_003129550.1|	-	1.5e-05	24.6	0.9	0.0014	18.1	0.1	2.2	2	0	0	2	2	2	2	Nitronate	monooxygenase
G3P_antiterm	PF04309.12	gi|257051717|ref|YP_003129550.1|	-	0.0006	19.3	0.0	0.0017	17.8	0.1	1.7	2	0	0	2	2	2	1	Glycerol-3-phosphate	responsive	antiterminator
DHO_dh	PF01180.21	gi|257051717|ref|YP_003129550.1|	-	0.0016	17.7	0.1	0.02	14.1	0.0	2.1	2	0	0	2	2	2	1	Dihydroorotate	dehydrogenase
IMPDH	PF00478.25	gi|257051717|ref|YP_003129550.1|	-	0.0088	15.1	0.5	0.019	14.0	0.2	1.6	2	0	0	2	2	2	1	IMP	dehydrogenase	/	GMP	reductase	domain
TMP-TENI	PF02581.17	gi|257051717|ref|YP_003129550.1|	-	0.027	13.8	0.1	0.15	11.4	0.0	2.1	2	0	0	2	2	2	0	Thiamine	monophosphate	synthase
Glu_synthase	PF01645.17	gi|257051717|ref|YP_003129550.1|	-	0.067	12.3	0.1	0.097	11.8	0.1	1.2	1	0	0	1	1	1	0	Conserved	region	in	glutamate	synthase
FMN_dh	PF01070.18	gi|257051717|ref|YP_003129550.1|	-	0.098	11.7	0.3	0.32	10.0	0.3	1.7	2	0	0	2	2	2	0	FMN-dependent	dehydrogenase
PcrB	PF01884.17	gi|257051717|ref|YP_003129550.1|	-	0.098	12.1	0.1	0.16	11.4	0.1	1.4	1	0	0	1	1	1	0	PcrB	family
HicA_toxin	PF07927.12	gi|257051718|ref|YP_003129551.1|	-	1.2e-13	50.8	0.0	1.4e-13	50.6	0.0	1.1	1	0	0	1	1	1	1	HicA	toxin	of	bacterial	toxin-antitoxin,
Trypan_PARP	PF05887.11	gi|257051720|ref|YP_003129553.1|	-	0.0048	16.9	0.4	0.0053	16.7	0.4	1.1	1	0	0	1	1	1	1	Procyclic	acidic	repetitive	protein	(PARP)
AIRS	PF00586.24	gi|257051721|ref|YP_003129554.1|	-	1.5e-42	144.1	9.5	5.2e-24	84.7	0.1	3.6	4	0	0	4	4	4	2	AIR	synthase	related	protein,	N-terminal	domain
AIRS_C	PF02769.22	gi|257051721|ref|YP_003129554.1|	-	7.1e-38	130.2	7.9	1.7e-31	109.4	1.2	3.0	3	0	0	3	3	3	2	AIR	synthase	related	protein,	C-terminal	domain
FGAR-AT_linker	PF18072.1	gi|257051721|ref|YP_003129554.1|	-	2e-07	31.4	0.0	8.5e-07	29.4	0.0	2.2	1	0	0	1	1	1	1	Formylglycinamide	ribonucleotide	amidotransferase	linker	domain
Fn3-like	PF14310.6	gi|257051722|ref|YP_003129555.1|	-	0.0091	16.1	0.0	0.025	14.7	0.0	1.8	1	1	1	2	2	2	1	Fibronectin	type	III-like	domain
CitMHS	PF03600.16	gi|257051723|ref|YP_003129556.1|	-	7.2e-62	209.3	6.8	7.2e-62	209.3	6.8	1.8	1	1	1	2	2	2	1	Citrate	transporter
TrkA_C	PF02080.21	gi|257051723|ref|YP_003129556.1|	-	6.5e-24	83.6	2.0	3.1e-11	42.9	0.1	3.2	3	0	0	3	3	3	2	TrkA-C	domain
Na_sulph_symp	PF00939.19	gi|257051723|ref|YP_003129556.1|	-	2.8e-19	69.5	35.0	1e-11	44.6	17.4	3.1	3	0	0	3	3	3	3	Sodium:sulfate	symporter	transmembrane	region
DctM	PF06808.12	gi|257051723|ref|YP_003129556.1|	-	1.5e-05	24.1	18.7	1.5e-05	24.1	18.7	2.4	2	0	0	2	2	2	1	Tripartite	ATP-independent	periplasmic	transporter,	DctM	component
EMC3_TMCO1	PF01956.16	gi|257051723|ref|YP_003129556.1|	-	0.48	10.1	1.7	1.3	8.7	1.7	1.8	1	0	0	1	1	1	0	Integral	membrane	protein	EMC3/TMCO1-like
Metallophos_2	PF12850.7	gi|257051724|ref|YP_003129557.1|	-	2.6e-13	50.5	0.1	6e-07	29.8	0.0	2.2	2	0	0	2	2	2	2	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|257051724|ref|YP_003129557.1|	-	6e-09	36.7	0.7	1.3e-07	32.4	0.3	2.1	2	0	0	2	2	2	1	Calcineurin-like	phosphoesterase
HMGL-like	PF00682.19	gi|257051725|ref|YP_003129558.1|	-	1.2e-64	218.4	6.8	1.2e-64	218.4	6.8	1.7	2	0	0	2	2	2	1	HMGL-like
Radical_SAM	PF04055.21	gi|257051725|ref|YP_003129558.1|	-	0.0015	18.9	0.2	0.0052	17.2	0.1	2.0	2	0	0	2	2	2	1	Radical	SAM	superfamily
DUF4754	PF15946.5	gi|257051725|ref|YP_003129558.1|	-	0.15	12.4	0.1	0.73	10.2	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4754)
TPP_enzyme_C	PF02775.21	gi|257051726|ref|YP_003129559.1|	-	2.2e-52	176.9	0.0	6.5e-52	175.4	0.0	1.9	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
TPP_enzyme_N	PF02776.18	gi|257051726|ref|YP_003129559.1|	-	7.2e-51	172.2	0.8	4.8e-49	166.3	1.0	2.5	3	0	0	3	3	3	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_M	PF00205.22	gi|257051726|ref|YP_003129559.1|	-	1.5e-44	151.1	0.1	2.6e-44	150.3	0.1	1.4	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	central	domain
CO_dh	PF02552.16	gi|257051726|ref|YP_003129559.1|	-	0.057	13.2	0.0	0.11	12.3	0.0	1.4	1	0	0	1	1	1	0	CO	dehydrogenase	beta	subunit/acetyl-CoA	synthase	epsilon	subunit
ALS_ss_C	PF10369.9	gi|257051727|ref|YP_003129560.1|	-	1.8e-22	79.3	0.2	2.9e-22	78.6	0.2	1.3	1	0	0	1	1	1	1	Small	subunit	of	acetolactate	synthase
ACT	PF01842.25	gi|257051727|ref|YP_003129560.1|	-	1e-13	50.8	0.4	2.5e-13	49.5	0.1	1.8	2	0	0	2	2	2	1	ACT	domain
ACT_5	PF13710.6	gi|257051727|ref|YP_003129560.1|	-	5.1e-13	48.7	0.1	2.7e-12	46.3	0.0	2.1	2	1	0	2	2	2	1	ACT	domain
ACT_4	PF13291.6	gi|257051727|ref|YP_003129560.1|	-	0.0064	17.1	0.0	0.016	15.8	0.0	1.6	1	0	0	1	1	1	1	ACT	domain
NIL	PF09383.10	gi|257051727|ref|YP_003129560.1|	-	0.079	12.8	0.4	9.9	6.1	0.0	2.7	3	0	0	3	3	3	0	NIL	domain
Acylphosphatase	PF00708.18	gi|257051727|ref|YP_003129560.1|	-	0.12	12.8	0.7	15	6.1	0.1	2.4	2	0	0	2	2	2	0	Acylphosphatase
YjeJ	PF15922.5	gi|257051727|ref|YP_003129560.1|	-	0.13	11.5	0.3	0.21	10.8	0.3	1.3	1	1	0	1	1	1	0	YjeJ-like
KH_1	PF00013.29	gi|257051727|ref|YP_003129560.1|	-	0.21	11.5	2.7	0.96	9.3	0.1	2.8	3	1	1	4	4	4	0	KH	domain
Pro_Al_protease	PF02983.14	gi|257051727|ref|YP_003129560.1|	-	0.27	11.3	3.4	0.23	11.5	0.6	2.3	3	0	0	3	3	3	0	Alpha-lytic	protease	prodomain
IlvN	PF07991.12	gi|257051728|ref|YP_003129561.1|	-	1.7e-67	226.1	0.1	2.2e-67	225.7	0.1	1.1	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
IlvC	PF01450.19	gi|257051728|ref|YP_003129561.1|	-	1.7e-62	210.0	1.2	2.6e-62	209.4	1.2	1.3	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
F420_oxidored	PF03807.17	gi|257051728|ref|YP_003129561.1|	-	7.1e-07	29.7	0.0	1.5e-06	28.7	0.0	1.6	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
2-Hacid_dh_C	PF02826.19	gi|257051728|ref|YP_003129561.1|	-	8.2e-06	25.3	0.0	1.5e-05	24.4	0.0	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_2	PF03446.15	gi|257051728|ref|YP_003129561.1|	-	0.00088	19.5	0.0	0.0021	18.3	0.0	1.6	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Mur_ligase	PF01225.25	gi|257051728|ref|YP_003129561.1|	-	0.022	15.1	0.1	0.063	13.6	0.1	1.8	1	0	0	1	1	1	0	Mur	ligase	family,	catalytic	domain
Aconitase	PF00330.20	gi|257051729|ref|YP_003129562.1|	-	2e-146	488.7	0.0	2.2e-146	488.5	0.0	1.0	1	0	0	1	1	1	1	Aconitase	family	(aconitate	hydratase)
Aconitase_C	PF00694.19	gi|257051730|ref|YP_003129563.1|	-	1.4e-19	70.7	0.0	1.9e-19	70.3	0.0	1.2	1	0	0	1	1	1	1	Aconitase	C-terminal	domain
BRK	PF07533.16	gi|257051730|ref|YP_003129563.1|	-	0.094	12.4	0.0	0.77	9.4	0.0	2.2	2	0	0	2	2	2	0	BRK	domain
UPF0184	PF03670.13	gi|257051731|ref|YP_003129564.1|	-	0.18	12.2	2.3	0.41	11.1	1.4	1.9	1	1	1	2	2	2	0	Uncharacterised	protein	family	(UPF0184)
HalX	PF08663.10	gi|257051731|ref|YP_003129564.1|	-	2	8.8	8.6	71	3.8	8.1	2.8	1	1	0	1	1	1	0	HalX	domain
Elong_Iki1	PF10483.9	gi|257051732|ref|YP_003129565.1|	-	2.8e-06	27.0	0.0	3.8e-06	26.6	0.0	1.1	1	0	0	1	1	1	1	Elongator	subunit	Iki1
Goodbye	PF17109.5	gi|257051733|ref|YP_003129566.1|	-	0.015	15.8	0.0	0.015	15.7	0.0	1.0	1	0	0	1	1	1	0	fungal	STAND	N-terminal	Goodbye	domain
DUF4404	PF14357.6	gi|257051733|ref|YP_003129566.1|	-	0.043	14.5	0.1	0.048	14.3	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4404)
zf-HC2	PF13490.6	gi|257051735|ref|YP_003129568.1|	-	0.38	11.1	2.7	0.65	10.3	0.4	2.7	3	0	0	3	3	3	0	Putative	zinc-finger
F_bP_aldolase	PF01116.20	gi|257051736|ref|YP_003129569.1|	-	2.8e-73	246.8	0.0	3.2e-73	246.7	0.0	1.0	1	0	0	1	1	1	1	Fructose-bisphosphate	aldolase	class-II
PfkB	PF00294.24	gi|257051737|ref|YP_003129570.1|	-	1.2e-44	152.9	0.2	2.4e-44	151.9	0.2	1.4	1	1	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Phos_pyr_kin	PF08543.12	gi|257051737|ref|YP_003129570.1|	-	0.0047	16.3	0.0	0.0076	15.7	0.0	1.3	1	0	0	1	1	1	1	Phosphomethylpyrimidine	kinase
DAGK_cat	PF00781.24	gi|257051737|ref|YP_003129570.1|	-	0.047	13.3	0.0	0.13	11.9	0.0	1.7	1	0	0	1	1	1	0	Diacylglycerol	kinase	catalytic	domain
Iso_dh	PF00180.20	gi|257051738|ref|YP_003129571.1|	-	4.6e-98	328.6	0.0	5.8e-98	328.2	0.0	1.0	1	0	0	1	1	1	1	Isocitrate/isopropylmalate	dehydrogenase
Lyase_1	PF00206.20	gi|257051739|ref|YP_003129572.1|	-	3.5e-53	181.0	0.0	4.7e-53	180.6	0.0	1.1	1	0	0	1	1	1	1	Lyase
ASL_C	PF08328.11	gi|257051739|ref|YP_003129572.1|	-	4.9e-41	139.4	0.0	8.2e-41	138.7	0.0	1.4	1	0	0	1	1	1	1	Adenylosuccinate	lyase	C-terminal
DUF4448	PF14610.6	gi|257051740|ref|YP_003129573.1|	-	0.27	11.0	5.6	0.18	11.6	1.1	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4448)
Fer2	PF00111.27	gi|257051741|ref|YP_003129574.1|	-	1.1e-06	28.5	0.1	2.6e-06	27.3	0.1	1.7	1	1	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
NAD_binding_1	PF00175.21	gi|257051742|ref|YP_003129575.1|	-	1.3e-15	58.0	0.0	4.1e-15	56.4	0.0	1.8	1	1	0	1	1	1	1	Oxidoreductase	NAD-binding	domain
FAD_binding_6	PF00970.24	gi|257051742|ref|YP_003129575.1|	-	1.5e-10	41.3	0.0	2.6e-10	40.5	0.0	1.3	1	0	0	1	1	1	1	Oxidoreductase	FAD-binding	domain
NAD_binding_6	PF08030.12	gi|257051742|ref|YP_003129575.1|	-	0.2	11.8	0.0	8.2	6.5	0.0	2.3	2	0	0	2	2	2	0	Ferric	reductase	NAD	binding	domain
DUF5326	PF17260.2	gi|257051743|ref|YP_003129576.1|	-	0.13	12.4	5.9	0.21	11.8	5.9	1.4	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5326)
RHH_1	PF01402.21	gi|257051744|ref|YP_003129577.1|	-	0.0016	18.3	0.0	0.0027	17.6	0.0	1.4	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
SHOCT	PF09851.9	gi|257051744|ref|YP_003129577.1|	-	0.022	14.5	0.5	0.039	13.7	0.5	1.5	1	0	0	1	1	1	0	Short	C-terminal	domain
GvpK	PF05121.12	gi|257051744|ref|YP_003129577.1|	-	0.069	13.2	0.1	0.1	12.6	0.1	1.2	1	0	0	1	1	1	0	Gas	vesicle	protein	K
CSD	PF00313.22	gi|257051748|ref|YP_003129581.1|	-	6.1e-19	67.7	0.3	6.6e-19	67.5	0.3	1.0	1	0	0	1	1	1	1	'Cold-shock'	DNA-binding	domain
S1-like	PF14444.6	gi|257051748|ref|YP_003129581.1|	-	0.043	13.8	0.6	0.061	13.3	0.6	1.4	1	1	0	1	1	1	0	S1-like
Rho_RNA_bind	PF07497.12	gi|257051748|ref|YP_003129581.1|	-	0.092	12.6	0.0	0.1	12.5	0.0	1.1	1	0	0	1	1	1	0	Rho	termination	factor,	RNA-binding	domain
RNA_POL_M_15KD	PF02150.16	gi|257051749|ref|YP_003129582.1|	-	0.011	15.5	0.9	0.78	9.7	0.1	2.1	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
DUF4428	PF14471.6	gi|257051749|ref|YP_003129582.1|	-	0.025	14.5	0.5	0.14	12.1	0.5	2.0	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4428)
zf-C2H2	PF00096.26	gi|257051749|ref|YP_003129582.1|	-	0.33	11.5	3.6	0.7	10.5	0.1	2.1	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
Thioredoxin_3	PF13192.6	gi|257051750|ref|YP_003129583.1|	-	1.3e-22	79.6	0.6	1.4e-22	79.5	0.6	1.0	1	0	0	1	1	1	1	Thioredoxin	domain
Glutaredoxin	PF00462.24	gi|257051750|ref|YP_003129583.1|	-	0.0028	17.8	0.1	0.004	17.4	0.1	1.2	1	0	0	1	1	1	1	Glutaredoxin
NPV_P10	PF05531.12	gi|257051750|ref|YP_003129583.1|	-	0.055	13.9	1.6	0.2	12.2	0.6	1.9	1	1	1	2	2	2	0	Nucleopolyhedrovirus	P10	protein
BLOC1_2	PF10046.9	gi|257051750|ref|YP_003129583.1|	-	0.058	13.7	0.0	0.084	13.2	0.0	1.2	1	0	0	1	1	1	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
DUF241	PF03087.14	gi|257051750|ref|YP_003129583.1|	-	0.12	12.1	0.0	0.15	11.9	0.0	1.1	1	0	0	1	1	1	0	Arabidopsis	protein	of	unknown	function
ArsP_1	PF03773.13	gi|257051751|ref|YP_003129584.1|	-	1.6e-61	208.1	17.4	2.7e-60	204.0	17.4	2.0	1	1	0	1	1	1	1	Predicted	permease
SBF	PF01758.16	gi|257051752|ref|YP_003129585.1|	-	1.3e-48	165.3	5.8	1.3e-48	165.3	5.8	2.0	2	0	0	2	2	2	1	Sodium	Bile	acid	symporter	family
HTH_20	PF12840.7	gi|257051753|ref|YP_003129586.1|	-	9.9e-08	31.9	2.4	1.9e-07	31.1	2.4	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|257051753|ref|YP_003129586.1|	-	0.00012	21.9	0.9	0.0002	21.2	0.8	1.5	1	1	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_27	PF13463.6	gi|257051753|ref|YP_003129586.1|	-	0.0047	17.4	0.0	0.0087	16.5	0.0	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
GntR	PF00392.21	gi|257051753|ref|YP_003129586.1|	-	0.0051	16.4	2.2	0.01	15.4	0.3	2.1	1	1	1	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
TrmB	PF01978.19	gi|257051753|ref|YP_003129586.1|	-	0.0098	15.8	0.0	0.021	14.7	0.0	1.6	1	1	1	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
DUF480	PF04337.12	gi|257051753|ref|YP_003129586.1|	-	0.017	15.3	0.0	0.04	14.0	0.0	1.6	1	1	1	2	2	2	0	Protein	of	unknown	function,	DUF480
DUF4423	PF14394.6	gi|257051753|ref|YP_003129586.1|	-	0.019	14.6	0.0	0.029	14.1	0.0	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
MarR_2	PF12802.7	gi|257051753|ref|YP_003129586.1|	-	0.034	14.0	1.0	0.19	11.6	1.0	2.1	1	1	0	1	1	1	0	MarR	family
Cdc6_C	PF09079.11	gi|257051753|ref|YP_003129586.1|	-	0.035	14.1	0.0	0.07	13.1	0.0	1.4	1	0	0	1	1	1	0	CDC6,	C	terminal	winged	helix	domain
HTH_34	PF13601.6	gi|257051753|ref|YP_003129586.1|	-	0.093	12.9	0.0	0.41	10.9	0.0	1.8	1	1	0	2	2	2	0	Winged	helix	DNA-binding	domain
CBS	PF00571.28	gi|257051754|ref|YP_003129587.1|	-	2.4e-15	56.7	7.4	4.2e-07	30.3	1.8	2.3	2	0	0	2	2	2	2	CBS	domain
CMAS	PF02353.20	gi|257051755|ref|YP_003129588.1|	-	0.022	14.1	0.0	0.026	13.8	0.0	1.0	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
DUF420	PF04238.12	gi|257051757|ref|YP_003129590.1|	-	3.7e-34	117.8	5.2	5.3e-34	117.3	5.2	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF420)
DUF2306	PF10067.9	gi|257051757|ref|YP_003129590.1|	-	1e-06	29.0	7.8	1.8e-06	28.2	1.3	2.2	2	0	0	2	2	2	2	Predicted	membrane	protein	(DUF2306)
DUF3413	PF11893.8	gi|257051757|ref|YP_003129590.1|	-	0.055	12.6	2.6	1.6	7.8	0.2	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3413)
DUF5389	PF17364.2	gi|257051757|ref|YP_003129590.1|	-	0.11	12.6	3.4	0.065	13.3	1.2	1.8	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5389)
Gram_pos_anchor	PF00746.21	gi|257051757|ref|YP_003129590.1|	-	0.94	9.5	0.0	0.94	9.5	0.0	3.6	4	0	0	4	4	4	0	LPXTG	cell	wall	anchor	motif
CPP1-like	PF11833.8	gi|257051757|ref|YP_003129590.1|	-	9.3	5.8	6.3	2.5	7.7	2.4	1.9	1	1	1	2	2	2	0	Protein	CHAPERONE-LIKE	PROTEIN	OF	POR1-like
GATase_6	PF13522.6	gi|257051758|ref|YP_003129591.1|	-	2.7e-20	72.9	0.0	7.6e-20	71.5	0.0	1.7	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_7	PF13537.6	gi|257051758|ref|YP_003129591.1|	-	2.6e-19	69.3	0.0	1e-18	67.4	0.0	1.9	3	0	0	3	3	3	1	Glutamine	amidotransferase	domain
Pribosyltran	PF00156.27	gi|257051758|ref|YP_003129591.1|	-	4.8e-07	29.4	0.1	1.2e-06	28.2	0.1	1.6	2	0	0	2	2	2	1	Phosphoribosyl	transferase	domain
GATase_4	PF13230.6	gi|257051758|ref|YP_003129591.1|	-	9.6e-05	21.4	0.0	0.0002	20.3	0.0	1.5	2	0	0	2	2	2	1	Glutamine	amidotransferases	class-II
Ribosomal_L37e	PF01907.19	gi|257051759|ref|YP_003129592.1|	-	9e-23	80.2	11.7	9.9e-23	80.1	11.7	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L37e
HypA	PF01155.19	gi|257051759|ref|YP_003129592.1|	-	0.15	12.1	2.0	0.18	11.9	2.0	1.1	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
RNA_POL_M_15KD	PF02150.16	gi|257051759|ref|YP_003129592.1|	-	0.84	9.6	4.3	1	9.3	0.5	2.1	1	1	1	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
zinc_ribbon_2	PF13240.6	gi|257051759|ref|YP_003129592.1|	-	0.88	9.4	6.6	0.56	10.0	0.6	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
LSM	PF01423.22	gi|257051760|ref|YP_003129593.1|	-	4.9e-14	51.8	1.0	7.4e-12	44.8	1.0	2.0	1	1	0	1	1	1	1	LSM	domain
SM-ATX	PF14438.6	gi|257051760|ref|YP_003129593.1|	-	0.00023	21.2	0.5	0.0044	17.1	0.2	1.9	1	1	1	2	2	2	2	Ataxin	2	SM	domain
DUF2642	PF10842.8	gi|257051760|ref|YP_003129593.1|	-	0.05	13.5	0.1	0.089	12.7	0.1	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2642)
Peptidase_M42	PF05343.14	gi|257051761|ref|YP_003129594.1|	-	1.6e-81	273.6	2.9	1.8e-81	273.4	2.9	1.0	1	0	0	1	1	1	1	M42	glutamyl	aminopeptidase
Peptidase_M18	PF02127.15	gi|257051761|ref|YP_003129594.1|	-	2.7e-07	29.7	0.0	4e-05	22.6	0.0	2.2	2	0	0	2	2	2	2	Aminopeptidase	I	zinc	metalloprotease	(M18)
ADH_zinc_N	PF00107.26	gi|257051761|ref|YP_003129594.1|	-	0.0076	16.2	0.1	0.016	15.2	0.1	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
Sulf_transp	PF04143.14	gi|257051763|ref|YP_003129596.1|	-	1.1e-45	156.6	32.4	1.8e-45	155.9	32.4	1.4	1	1	0	1	1	1	1	Sulphur	transport
Cupredoxin_1	PF13473.6	gi|257051764|ref|YP_003129597.1|	-	2.3e-10	40.5	0.0	2.8e-10	40.2	0.0	1.1	1	0	0	1	1	1	1	Cupredoxin-like	domain
Zincin_2	PF10103.9	gi|257051765|ref|YP_003129598.1|	-	8.8e-66	222.4	7.6	6.4e-36	124.3	1.7	2.0	1	1	1	2	2	2	2	Zincin-like	metallopeptidase
HisKA	PF00512.25	gi|257051765|ref|YP_003129598.1|	-	0.06	13.4	0.1	0.18	11.9	0.1	1.8	2	0	0	2	2	2	0	His	Kinase	A	(phospho-acceptor)	domain
PucR	PF07905.11	gi|257051765|ref|YP_003129598.1|	-	0.13	12.6	0.0	0.36	11.1	0.0	1.8	1	1	0	1	1	1	0	Purine	catabolism	regulatory	protein-like	family
DUF1667	PF07892.11	gi|257051767|ref|YP_003129600.1|	-	4.7e-32	109.9	0.4	6.6e-32	109.4	0.4	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1667)
Molybdop_Fe4S4	PF04879.16	gi|257051767|ref|YP_003129600.1|	-	0.0012	18.8	2.0	0.005	16.8	2.0	1.9	1	1	0	1	1	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
Pyr_redox_2	PF07992.14	gi|257051768|ref|YP_003129601.1|	-	6.2e-34	117.6	1.8	1.1e-33	116.8	1.8	1.5	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|257051768|ref|YP_003129601.1|	-	5e-17	62.1	0.0	5.2e-09	35.8	0.0	2.2	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|257051768|ref|YP_003129601.1|	-	8.3e-10	39.1	3.8	0.0097	16.4	0.0	3.4	2	1	0	3	3	3	3	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|257051768|ref|YP_003129601.1|	-	2e-09	37.0	6.1	2.7e-05	23.4	0.4	3.7	2	2	2	4	4	4	2	FAD	binding	domain
DAO	PF01266.24	gi|257051768|ref|YP_003129601.1|	-	2.5e-09	37.2	7.2	0.00024	20.8	0.1	2.9	3	1	1	4	4	4	2	FAD	dependent	oxidoreductase
FAD_oxidored	PF12831.7	gi|257051768|ref|YP_003129601.1|	-	1.6e-07	31.1	0.2	3.1e-07	30.1	0.2	1.5	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.19	gi|257051768|ref|YP_003129601.1|	-	2e-06	27.3	1.1	0.00098	18.5	0.0	2.5	2	1	0	2	2	2	2	FAD	binding	domain
HI0933_like	PF03486.14	gi|257051768|ref|YP_003129601.1|	-	2.1e-06	26.8	3.6	0.0053	15.5	0.1	3.0	3	0	0	3	3	3	2	HI0933-like	protein
NAD_binding_8	PF13450.6	gi|257051768|ref|YP_003129601.1|	-	2.8e-06	27.5	0.1	7e-05	23.0	0.1	2.5	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
Amino_oxidase	PF01593.24	gi|257051768|ref|YP_003129601.1|	-	8.9e-05	21.9	1.3	0.049	12.9	0.1	2.2	1	1	1	2	2	2	2	Flavin	containing	amine	oxidoreductase
Thi4	PF01946.17	gi|257051768|ref|YP_003129601.1|	-	0.00087	18.6	1.7	0.0023	17.2	0.1	2.3	3	0	0	3	3	3	1	Thi4	family
NAD_binding_9	PF13454.6	gi|257051768|ref|YP_003129601.1|	-	0.0024	17.9	1.2	0.53	10.3	0.1	2.6	2	0	0	2	2	2	1	FAD-NAD(P)-binding
Lycopene_cycl	PF05834.12	gi|257051768|ref|YP_003129601.1|	-	0.0034	16.5	2.4	0.098	11.7	0.4	2.9	3	0	0	3	3	3	1	Lycopene	cyclase	protein
Glu_dehyd_C	PF16912.5	gi|257051768|ref|YP_003129601.1|	-	0.0051	16.3	0.1	3	7.3	0.0	2.5	2	0	0	2	2	2	2	Glucose	dehydrogenase	C-terminus
Shikimate_DH	PF01488.20	gi|257051768|ref|YP_003129601.1|	-	0.047	13.7	0.1	3	7.9	0.0	2.9	3	0	0	3	3	3	0	Shikimate	/	quinate	5-dehydrogenase
GIDA	PF01134.22	gi|257051768|ref|YP_003129601.1|	-	0.11	11.6	3.4	0.18	10.8	0.7	2.0	1	1	1	2	2	2	0	Glucose	inhibited	division	protein	A
K_oxygenase	PF13434.6	gi|257051768|ref|YP_003129601.1|	-	0.23	10.5	0.0	15	4.6	0.0	2.3	2	0	0	2	2	2	0	L-lysine	6-monooxygenase	(NADPH-requiring)
DAO	PF01266.24	gi|257051769|ref|YP_003129602.1|	-	2.2e-72	244.6	1.6	2.8e-72	244.2	1.6	1.1	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Fer2_BFD	PF04324.15	gi|257051769|ref|YP_003129602.1|	-	1.3e-15	57.5	2.1	1.3e-15	57.5	2.1	2.0	2	0	0	2	2	1	1	BFD-like	[2Fe-2S]	binding	domain
Pyr_redox_2	PF07992.14	gi|257051769|ref|YP_003129602.1|	-	2.7e-08	33.4	0.2	1.3e-05	24.6	0.0	2.2	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|257051769|ref|YP_003129602.1|	-	4.2e-07	29.5	0.6	0.0012	18.2	0.1	2.2	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Lycopene_cycl	PF05834.12	gi|257051769|ref|YP_003129602.1|	-	2.8e-06	26.6	0.5	0.00012	21.3	0.1	2.2	2	0	0	2	2	2	1	Lycopene	cyclase	protein
NAD_binding_8	PF13450.6	gi|257051769|ref|YP_003129602.1|	-	3.3e-06	27.2	0.1	8.4e-06	25.9	0.1	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox	PF00070.27	gi|257051769|ref|YP_003129602.1|	-	0.00011	22.7	0.2	0.00081	19.9	0.1	2.3	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.19	gi|257051769|ref|YP_003129602.1|	-	0.00018	20.9	0.7	0.0096	15.2	0.1	2.2	2	0	0	2	2	2	1	FAD	binding	domain
HI0933_like	PF03486.14	gi|257051769|ref|YP_003129602.1|	-	0.00027	19.8	0.5	0.047	12.4	0.1	2.1	2	0	0	2	2	2	2	HI0933-like	protein
Thi4	PF01946.17	gi|257051769|ref|YP_003129602.1|	-	0.00051	19.4	0.8	0.053	12.8	0.1	2.7	3	0	0	3	3	3	1	Thi4	family
NAD_binding_9	PF13454.6	gi|257051769|ref|YP_003129602.1|	-	0.0015	18.5	1.1	0.3	11.1	0.0	2.3	2	0	0	2	2	2	1	FAD-NAD(P)-binding
3HCDH_N	PF02737.18	gi|257051769|ref|YP_003129602.1|	-	0.0065	16.4	0.0	0.014	15.3	0.0	1.6	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
TrkA_N	PF02254.18	gi|257051769|ref|YP_003129602.1|	-	0.0079	16.5	0.6	0.071	13.4	0.0	2.5	3	0	0	3	3	3	1	TrkA-N	domain
FAD_binding_2	PF00890.24	gi|257051769|ref|YP_003129602.1|	-	0.032	13.3	0.0	0.047	12.8	0.0	1.4	1	0	0	1	1	1	0	FAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|257051769|ref|YP_003129602.1|	-	0.042	13.2	0.0	0.081	12.2	0.0	1.4	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
GIDA	PF01134.22	gi|257051769|ref|YP_003129602.1|	-	0.051	12.7	0.2	0.095	11.8	0.2	1.4	1	0	0	1	1	1	0	Glucose	inhibited	division	protein	A
NAD_Gly3P_dh_N	PF01210.23	gi|257051769|ref|YP_003129602.1|	-	0.15	12.0	0.0	0.3	11.0	0.0	1.5	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
TENA_THI-4	PF03070.16	gi|257051770|ref|YP_003129603.1|	-	9.5e-52	175.9	0.0	1.1e-51	175.7	0.0	1.0	1	0	0	1	1	1	1	TENA/THI-4/PQQC	family
TENA_THI-4	PF03070.16	gi|257051771|ref|YP_003129604.1|	-	9.4e-23	81.1	0.0	1.1e-22	80.9	0.0	1.1	1	0	0	1	1	1	1	TENA/THI-4/PQQC	family
SSF	PF00474.17	gi|257051772|ref|YP_003129605.1|	-	5.6e-29	101.2	24.5	1.1e-28	100.3	24.5	1.5	1	1	0	1	1	1	1	Sodium:solute	symporter	family
Arch_fla_DE	PF04659.13	gi|257051773|ref|YP_003129606.1|	-	8.5e-25	86.5	0.0	1.1e-24	86.1	0.0	1.2	1	0	0	1	1	1	1	Archaeal	flagella	protein
AAA_31	PF13614.6	gi|257051774|ref|YP_003129607.1|	-	1.6e-36	125.9	0.0	1.2e-35	123.0	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|257051774|ref|YP_003129607.1|	-	4.5e-21	75.2	0.0	6.3e-21	74.8	0.0	1.2	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
MipZ	PF09140.11	gi|257051774|ref|YP_003129607.1|	-	6.4e-10	38.7	3.1	1.4e-06	27.8	0.3	2.4	2	0	0	2	2	2	2	ATPase	MipZ
CBP_BcsQ	PF06564.12	gi|257051774|ref|YP_003129607.1|	-	7.2e-08	32.2	0.7	0.0021	17.6	0.1	2.3	2	0	0	2	2	2	2	Cellulose	biosynthesis	protein	BcsQ
ParA	PF10609.9	gi|257051774|ref|YP_003129607.1|	-	9e-08	31.9	1.0	1.8e-06	27.6	0.2	2.4	2	1	0	2	2	2	1	NUBPL	iron-transfer	P-loop	NTPase
Fer4_NifH	PF00142.18	gi|257051774|ref|YP_003129607.1|	-	7.6e-06	25.6	0.1	0.00015	21.3	0.0	2.3	2	0	0	2	2	2	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
ArsA_ATPase	PF02374.15	gi|257051774|ref|YP_003129607.1|	-	4e-05	22.9	0.3	0.00041	19.6	0.0	2.2	2	1	0	2	2	2	1	Anion-transporting	ATPase
adh_short_C2	PF13561.6	gi|257051774|ref|YP_003129607.1|	-	0.00033	20.3	0.4	0.048	13.2	0.0	2.1	2	0	0	2	2	2	1	Enoyl-(Acyl	carrier	protein)	reductase
DnaB_C	PF03796.15	gi|257051774|ref|YP_003129607.1|	-	0.0046	16.3	0.1	1.4	8.2	0.0	2.1	2	0	0	2	2	2	2	DnaB-like	helicase	C	terminal	domain
AAA_30	PF13604.6	gi|257051774|ref|YP_003129607.1|	-	0.033	13.9	0.0	0.056	13.2	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_25	PF13481.6	gi|257051774|ref|YP_003129607.1|	-	0.04	13.5	2.0	0.059	12.9	0.0	2.1	3	0	0	3	3	3	0	AAA	domain
LpxK	PF02606.14	gi|257051774|ref|YP_003129607.1|	-	0.048	12.8	0.1	0.081	12.0	0.1	1.3	1	0	0	1	1	1	0	Tetraacyldisaccharide-1-P	4'-kinase
MeaB	PF03308.16	gi|257051774|ref|YP_003129607.1|	-	0.079	11.9	0.2	0.21	10.5	0.1	1.7	2	0	0	2	2	2	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_24	PF13479.6	gi|257051774|ref|YP_003129607.1|	-	0.18	11.5	1.1	0.51	10.0	0.8	2.1	1	1	0	1	1	1	0	AAA	domain
SRP54	PF00448.22	gi|257051774|ref|YP_003129607.1|	-	0.19	11.4	0.6	3.5	7.2	0.1	2.6	3	0	0	3	3	3	0	SRP54-type	protein,	GTPase	domain
CLP1_P	PF16575.5	gi|257051774|ref|YP_003129607.1|	-	0.2	11.4	0.0	0.46	10.2	0.0	1.5	1	0	0	1	1	1	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
VirC1	PF07015.11	gi|257051774|ref|YP_003129607.1|	-	0.58	9.4	5.2	0.45	9.8	0.1	2.6	1	1	2	3	3	3	0	VirC1	protein
CheW	PF01584.19	gi|257051775|ref|YP_003129608.1|	-	2e-20	72.8	0.4	2.8e-20	72.4	0.4	1.2	1	0	0	1	1	1	1	CheW-like	domain
Pyr_redox_2	PF07992.14	gi|257051776|ref|YP_003129609.1|	-	2.6e-23	82.7	3.8	6.1e-23	81.5	3.8	1.6	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|257051776|ref|YP_003129609.1|	-	5e-11	43.0	0.4	6.2e-09	36.3	0.1	2.6	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.24	gi|257051776|ref|YP_003129609.1|	-	0.00049	19.8	10.0	0.21	11.1	0.4	3.3	3	0	0	3	3	3	2	FAD	dependent	oxidoreductase
NAD_binding_9	PF13454.6	gi|257051776|ref|YP_003129609.1|	-	0.0043	17.0	4.0	1.9	8.5	0.0	3.3	2	2	1	3	3	3	2	FAD-NAD(P)-binding
NAD_binding_8	PF13450.6	gi|257051776|ref|YP_003129609.1|	-	0.0073	16.5	1.6	4.2	7.7	0.2	3.1	3	0	0	3	3	3	2	NAD(P)-binding	Rossmann-like	domain
Sacchrp_dh_NADP	PF03435.18	gi|257051776|ref|YP_003129609.1|	-	0.044	14.0	0.3	0.42	10.9	0.0	2.4	2	0	0	2	2	2	0	Saccharopine	dehydrogenase	NADP	binding	domain
UDPG_MGDP_dh_N	PF03721.14	gi|257051776|ref|YP_003129609.1|	-	0.086	12.4	0.0	0.9	9.1	0.0	2.3	2	0	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
TrkA_N	PF02254.18	gi|257051776|ref|YP_003129609.1|	-	0.089	13.1	0.3	0.88	9.8	0.1	2.4	2	0	0	2	2	2	0	TrkA-N	domain
GHMP_kinases_N	PF00288.26	gi|257051777|ref|YP_003129610.1|	-	3.6e-07	30.3	1.8	7.2e-07	29.3	1.8	1.5	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
MDD_C	PF18376.1	gi|257051777|ref|YP_003129610.1|	-	0.0017	18.2	0.0	0.0025	17.6	0.0	1.2	1	0	0	1	1	1	1	Mevalonate	5-diphosphate	decarboxylase	C-terminal	domain
Proton_antipo_M	PF00361.20	gi|257051778|ref|YP_003129611.1|	-	1e-65	221.8	21.3	1e-65	221.8	21.3	2.2	2	0	0	2	2	2	2	Proton-conducting	membrane	transporter
Proton_antipo_M	PF00361.20	gi|257051779|ref|YP_003129612.1|	-	1.1e-72	244.8	21.6	1.1e-72	244.8	21.6	1.6	2	0	0	2	2	2	1	Proton-conducting	membrane	transporter
RAMP4	PF06624.12	gi|257051779|ref|YP_003129612.1|	-	0.12	12.5	0.0	0.35	10.9	0.0	1.8	1	0	0	1	1	1	0	Ribosome	associated	membrane	protein	RAMP4
Oxidored_q5_N	PF01059.17	gi|257051779|ref|YP_003129612.1|	-	0.43	10.7	0.0	0.43	10.7	0.0	2.9	3	1	0	3	3	3	0	NADH-ubiquinone	oxidoreductase	chain	4,	amino	terminus
Proton_antipo_M	PF00361.20	gi|257051780|ref|YP_003129613.1|	-	6.9e-77	258.5	17.1	1.7e-76	257.2	17.1	1.7	1	0	0	1	1	1	1	Proton-conducting	membrane	transporter
Proton_antipo_N	PF00662.20	gi|257051780|ref|YP_003129613.1|	-	1.3e-14	53.9	1.4	2.9e-14	52.9	0.1	2.4	2	0	0	2	2	2	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
Proton_antipo_C	PF01010.19	gi|257051780|ref|YP_003129613.1|	-	0.0075	15.9	0.0	0.034	13.8	0.0	2.1	2	1	0	2	2	2	1	NADH-dehyrogenase	subunit	F,	TMs,	(complex	I)	C-terminus
Oxidored_q2	PF00420.24	gi|257051781|ref|YP_003129614.1|	-	1.2e-22	79.5	8.6	1.5e-22	79.2	8.6	1.0	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
DUF2567	PF10821.8	gi|257051781|ref|YP_003129614.1|	-	0.015	15.4	2.3	0.023	14.7	2.4	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2567)
Oxidored_q3	PF00499.20	gi|257051782|ref|YP_003129615.1|	-	0.004	16.9	1.5	0.0046	16.7	1.5	1.1	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	6
Oxidored_q3	PF00499.20	gi|257051783|ref|YP_003129616.1|	-	7.9e-19	67.8	4.2	1.2e-18	67.2	4.2	1.3	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	6
DUF4040	PF13244.6	gi|257051783|ref|YP_003129616.1|	-	0.0016	18.5	12.6	0.0016	18.5	12.6	1.4	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4040)
CrgA	PF06781.12	gi|257051783|ref|YP_003129616.1|	-	3.4	7.8	7.6	2.2	8.4	6.4	1.4	1	1	0	1	1	1	0	Cell	division	protein	CrgA
DUF872	PF05915.12	gi|257051783|ref|YP_003129616.1|	-	6.2	7.0	7.1	2.1	8.6	0.7	2.4	1	1	2	3	3	3	0	Eukaryotic	protein	of	unknown	function	(DUF872)
ABC2_membrane_3	PF12698.7	gi|257051784|ref|YP_003129617.1|	-	1.4	7.9	19.9	0.064	12.4	11.8	1.9	1	1	1	2	2	2	0	ABC-2	family	transporter	protein
ABC_tran	PF00005.27	gi|257051785|ref|YP_003129618.1|	-	8.8e-29	100.8	0.0	1.4e-28	100.1	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|257051785|ref|YP_003129618.1|	-	1e-10	41.9	2.7	1.5e-06	28.2	0.1	2.2	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_16	PF13191.6	gi|257051785|ref|YP_003129618.1|	-	0.0075	16.7	0.1	0.017	15.5	0.1	1.6	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|257051785|ref|YP_003129618.1|	-	0.0078	15.9	0.1	0.016	14.9	0.1	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
SMC_N	PF02463.19	gi|257051785|ref|YP_003129618.1|	-	0.024	14.1	1.1	0.32	10.4	1.1	2.1	1	1	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|257051785|ref|YP_003129618.1|	-	0.026	15.0	0.2	0.044	14.3	0.2	1.4	1	1	0	1	1	1	0	AAA	domain
AAA_19	PF13245.6	gi|257051785|ref|YP_003129618.1|	-	0.038	14.3	0.0	0.06	13.7	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
MukB	PF04310.12	gi|257051785|ref|YP_003129618.1|	-	0.042	13.7	0.0	0.076	12.8	0.0	1.3	1	0	0	1	1	1	0	MukB	N-terminal
DUF456	PF04306.13	gi|257051786|ref|YP_003129619.1|	-	1e-27	97.1	28.5	1e-27	97.1	28.5	1.6	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF456)
DUF3285	PF11688.8	gi|257051786|ref|YP_003129619.1|	-	0.12	12.3	0.7	0.12	12.3	0.7	3.0	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3285)
DUF4177	PF13783.6	gi|257051787|ref|YP_003129620.1|	-	5.8e-06	26.5	0.2	9.6e-06	25.8	0.2	1.4	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4177)
SSV1_ORF_D-335	PF07935.11	gi|257051787|ref|YP_003129620.1|	-	0.14	12.5	0.0	0.15	12.4	0.0	1.1	1	0	0	1	1	1	0	ORF	D-335-like	protein
Fer4	PF00037.27	gi|257051788|ref|YP_003129621.1|	-	9.5e-13	47.4	9.3	4.5e-07	29.4	2.3	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|257051788|ref|YP_003129621.1|	-	7.9e-12	45.6	10.6	1.3e-11	44.9	10.6	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|257051788|ref|YP_003129621.1|	-	1.8e-11	44.8	2.1	6.1e-06	27.1	0.1	2.3	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_9	PF13187.6	gi|257051788|ref|YP_003129621.1|	-	4.1e-09	36.5	22.8	2.3e-07	30.9	11.9	1.7	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|257051788|ref|YP_003129621.1|	-	1.5e-08	34.6	9.3	2.3e-08	34.0	9.3	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|257051788|ref|YP_003129621.1|	-	2e-07	31.0	19.8	4.1e-06	26.8	11.5	1.7	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|257051788|ref|YP_003129621.1|	-	1.4e-06	28.7	7.8	0.0011	19.4	12.0	2.2	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|257051788|ref|YP_003129621.1|	-	1e-05	25.4	13.2	0.012	15.6	1.8	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|257051788|ref|YP_003129621.1|	-	2e-05	25.0	12.6	0.0089	16.6	1.8	2.2	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|257051788|ref|YP_003129621.1|	-	3e-05	23.9	12.6	0.0023	17.9	2.0	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|257051788|ref|YP_003129621.1|	-	0.0002	21.6	13.9	4.5	8.0	13.9	2.2	1	1	0	1	1	1	1	4Fe-4S	binding	domain
Fer4_3	PF12798.7	gi|257051788|ref|YP_003129621.1|	-	0.00023	21.9	14.0	0.0041	18.0	2.5	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|257051788|ref|YP_003129621.1|	-	0.0007	19.8	9.8	0.041	14.1	1.8	2.2	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_22	PF17179.4	gi|257051788|ref|YP_003129621.1|	-	0.0015	19.4	3.8	0.63	10.9	0.3	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|257051788|ref|YP_003129621.1|	-	0.021	15.4	9.9	0.4	11.2	1.1	2.6	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
ETF_QO	PF05187.13	gi|257051788|ref|YP_003129621.1|	-	0.039	14.1	8.0	0.15	12.2	8.1	1.7	1	1	0	1	1	1	0	Electron	transfer	flavoprotein-ubiquinone	oxidoreductase,	4Fe-4S
TNFR_c6	PF00020.18	gi|257051788|ref|YP_003129621.1|	-	0.28	11.6	8.0	4.2	7.9	1.3	2.5	2	0	0	2	2	2	0	TNFR/NGFR	cysteine-rich	region
c-SKI_SMAD_bind	PF08782.10	gi|257051788|ref|YP_003129621.1|	-	4.1	7.7	8.6	6.7	7.0	0.6	2.2	1	1	1	2	2	2	0	c-SKI	Smad4	binding	domain
NADHdh	PF00146.21	gi|257051789|ref|YP_003129622.1|	-	4.7e-98	328.2	15.0	5.7e-98	327.9	15.0	1.1	1	0	0	1	1	1	1	NADH	dehydrogenase
Complex1_49kDa	PF00346.19	gi|257051790|ref|YP_003129623.1|	-	8.3e-85	284.2	0.1	1.5e-83	280.0	0.1	2.1	1	1	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	49	Kd	subunit
Complex1_30kDa	PF00329.19	gi|257051790|ref|YP_003129623.1|	-	1.6e-32	112.7	0.1	3.5e-32	111.6	0.1	1.6	1	0	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	30	Kd	subunit
Oxidored_q6	PF01058.22	gi|257051791|ref|YP_003129624.1|	-	7e-21	74.4	0.1	1e-20	73.9	0.1	1.2	1	0	0	1	1	1	1	NADH	ubiquinone	oxidoreductase,	20	Kd	subunit
VlpA_repeat	PF04649.12	gi|257051791|ref|YP_003129624.1|	-	0.91	9.9	6.5	0.98	9.8	4.7	2.0	2	0	0	2	2	2	0	Mycoplasma	hyorhinis	VlpA	repeat
Oxidored_q4	PF00507.19	gi|257051792|ref|YP_003129625.1|	-	2.7e-30	104.5	0.1	3.3e-30	104.2	0.1	1.1	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase,	chain	3
TrbC	PF04956.13	gi|257051792|ref|YP_003129625.1|	-	1.9	8.8	7.7	0.5	10.6	1.4	2.3	2	0	0	2	2	2	0	TrbC/VIRB2	family
AIRC	PF00731.20	gi|257051793|ref|YP_003129626.1|	-	1.3e-48	164.3	0.0	2e-48	163.7	0.0	1.3	1	1	0	1	1	1	1	AIR	carboxylase
ATP-grasp	PF02222.22	gi|257051794|ref|YP_003129627.1|	-	2.9e-48	163.7	0.0	4.5e-48	163.1	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
PurK_C	PF17769.1	gi|257051794|ref|YP_003129627.1|	-	6.3e-14	51.4	0.0	1.2e-13	50.5	0.0	1.4	1	0	0	1	1	1	1	Phosphoribosylaminoimidazole	carboxylase	C-terminal	domain
2-Hacid_dh_C	PF02826.19	gi|257051794|ref|YP_003129627.1|	-	2.4e-06	27.0	0.0	4.1e-06	26.3	0.0	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Dala_Dala_lig_C	PF07478.13	gi|257051794|ref|YP_003129627.1|	-	0.0016	18.1	0.0	0.014	14.9	0.0	2.2	1	1	0	1	1	1	1	D-ala	D-ala	ligase	C-terminus
ATP-grasp_5	PF13549.6	gi|257051794|ref|YP_003129627.1|	-	0.0042	16.6	0.0	0.0088	15.5	0.0	1.4	1	0	0	1	1	1	1	ATP-grasp	domain
CPSase_L_D2	PF02786.17	gi|257051794|ref|YP_003129627.1|	-	0.0049	16.4	0.0	0.008	15.7	0.0	1.3	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
3HCDH_N	PF02737.18	gi|257051794|ref|YP_003129627.1|	-	0.0075	16.2	0.0	0.012	15.5	0.0	1.3	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ATPgrasp_N	PF18130.1	gi|257051794|ref|YP_003129627.1|	-	0.014	16.0	0.1	0.059	13.9	0.1	2.1	1	0	0	1	1	1	0	ATP-grasp	N-terminal	domain
XdhC_C	PF13478.6	gi|257051794|ref|YP_003129627.1|	-	0.03	14.8	0.0	0.062	13.8	0.0	1.6	1	0	0	1	1	1	0	XdhC	Rossmann	domain
Pyr_redox	PF00070.27	gi|257051794|ref|YP_003129627.1|	-	0.1	13.2	0.1	0.4	11.3	0.1	2.0	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
ATP-grasp_3	PF02655.14	gi|257051794|ref|YP_003129627.1|	-	0.11	12.6	0.0	0.68	10.0	0.0	2.0	1	1	0	1	1	1	0	ATP-grasp	domain
Epimerase	PF01370.21	gi|257051794|ref|YP_003129627.1|	-	0.15	11.5	0.0	0.23	10.9	0.0	1.2	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
PMT_2	PF13231.6	gi|257051795|ref|YP_003129628.1|	-	5e-10	39.8	3.9	5e-10	39.8	3.9	3.0	4	0	0	4	4	4	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
YjcB	PF15940.5	gi|257051795|ref|YP_003129628.1|	-	0.078	13.2	0.2	0.24	11.6	0.2	1.8	1	0	0	1	1	1	0	Family	of	unknown	function
Aminotran_1_2	PF00155.21	gi|257051796|ref|YP_003129629.1|	-	2.3e-67	227.7	0.0	2.7e-67	227.5	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Cys_Met_Meta_PP	PF01053.20	gi|257051796|ref|YP_003129629.1|	-	0.00018	20.2	0.0	0.00027	19.6	0.0	1.2	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Beta_elim_lyase	PF01212.21	gi|257051796|ref|YP_003129629.1|	-	0.0021	17.4	0.1	0.0067	15.7	0.0	1.7	2	0	0	2	2	2	1	Beta-eliminating	lyase
DinB_2	PF12867.7	gi|257051796|ref|YP_003129629.1|	-	0.04	14.4	1.1	6.6	7.3	1.0	2.9	2	1	0	2	2	2	0	DinB	superfamily
Flp_Fap	PF04964.14	gi|257051799|ref|YP_003129632.1|	-	0.3	10.9	0.3	0.3	10.9	0.3	3.0	3	0	0	3	3	3	0	Flp/Fap	pilin	component
Phage_holin_5_2	PF16079.5	gi|257051799|ref|YP_003129632.1|	-	3.5	8.0	11.1	0.078	13.3	2.1	2.5	2	1	1	3	3	3	0	Phage	holin	family	Hol44,	in	holin	superfamily	V
CTP_transf_like	PF01467.26	gi|257051800|ref|YP_003129633.1|	-	8.6e-18	64.9	0.0	9.8e-18	64.7	0.0	1.0	1	0	0	1	1	1	1	Cytidylyltransferase-like
FAD_syn	PF06574.12	gi|257051800|ref|YP_003129633.1|	-	0.14	12.1	0.4	0.24	11.3	0.4	1.6	1	1	0	1	1	1	0	FAD	synthetase
Prok-JAB	PF14464.6	gi|257051801|ref|YP_003129634.1|	-	6.4e-11	42.1	0.1	8.8e-11	41.6	0.1	1.2	1	0	0	1	1	1	1	Prokaryotic	homologs	of	the	JAB	domain
RadC	PF04002.15	gi|257051801|ref|YP_003129634.1|	-	0.00016	21.6	0.0	0.00026	20.9	0.0	1.3	1	0	0	1	1	1	1	RadC-like	JAB	domain
tRNA_anti-codon	PF01336.25	gi|257051802|ref|YP_003129635.1|	-	8.2e-11	41.7	0.2	1.5e-10	40.9	0.2	1.5	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
S1	PF00575.23	gi|257051802|ref|YP_003129635.1|	-	3.9e-05	23.9	0.3	0.00011	22.4	0.3	1.8	1	0	0	1	1	1	1	S1	RNA	binding	domain
DHH	PF01368.20	gi|257051802|ref|YP_003129635.1|	-	0.0029	17.8	0.9	0.0057	16.9	0.9	1.5	1	0	0	1	1	1	1	DHH	family
tRNA_anti_2	PF13742.6	gi|257051802|ref|YP_003129635.1|	-	0.018	15.3	0.0	0.036	14.3	0.0	1.5	1	0	0	1	1	1	0	OB-fold	nucleic	acid	binding	domain
PLDc_2	PF13091.6	gi|257051803|ref|YP_003129636.1|	-	1.4e-38	131.8	0.0	6.9e-21	74.5	0.0	2.1	2	0	0	2	2	2	2	PLD-like	domain
PLDc	PF00614.22	gi|257051803|ref|YP_003129636.1|	-	1.7e-07	31.1	5.6	6.6e-06	26.1	0.5	2.7	2	0	0	2	2	2	2	Phospholipase	D	Active	site	motif
FAM83	PF07894.12	gi|257051803|ref|YP_003129636.1|	-	0.0029	17.2	0.0	0.0067	16.0	0.0	1.6	2	0	0	2	2	2	1	FAM83	A-H
Regulator_TrmB	PF11495.8	gi|257051803|ref|YP_003129636.1|	-	0.0046	16.2	0.1	2.4	7.3	0.0	2.7	2	1	0	3	3	3	2	Archaeal	transcriptional	regulator	TrmB
LTD	PF00932.19	gi|257051803|ref|YP_003129636.1|	-	0.01	16.2	0.1	0.029	14.7	0.1	1.8	1	0	0	1	1	1	0	Lamin	Tail	Domain
Glyco_trans_4_4	PF13579.6	gi|257051803|ref|YP_003129636.1|	-	0.11	12.9	17.9	3.2	8.2	5.4	3.9	3	1	0	3	3	3	0	Glycosyl	transferase	4-like	domain
PP_kinase_C	PF13090.6	gi|257051803|ref|YP_003129636.1|	-	0.2	11.1	0.0	13	5.2	0.0	2.2	2	0	0	2	2	2	0	Polyphosphate	kinase	C-terminal	domain	2
Glyco_transf_4	PF13439.6	gi|257051803|ref|YP_003129636.1|	-	1.3	9.0	5.7	11	5.9	0.1	3.2	3	1	1	4	4	4	0	Glycosyltransferase	Family	4
HEAT_2	PF13646.6	gi|257051804|ref|YP_003129637.1|	-	4.2e-19	68.7	13.1	2.8e-11	43.6	0.5	4.3	2	2	2	4	4	4	2	HEAT	repeats
HEAT_PBS	PF03130.16	gi|257051804|ref|YP_003129637.1|	-	2e-15	55.9	13.9	3.9e-05	23.9	0.4	5.9	6	1	0	6	6	6	4	PBS	lyase	HEAT-like	repeat
HEAT	PF02985.22	gi|257051804|ref|YP_003129637.1|	-	9.8e-06	25.4	4.9	0.028	14.7	0.1	4.4	4	0	0	4	4	4	2	HEAT	repeat
HEAT_EZ	PF13513.6	gi|257051804|ref|YP_003129637.1|	-	0.00014	22.3	11.3	0.019	15.5	0.2	4.3	4	1	1	5	5	5	2	HEAT-like	repeat
Arm	PF00514.23	gi|257051804|ref|YP_003129637.1|	-	0.00028	20.8	0.7	1.4	9.1	0.0	3.6	1	1	2	3	3	3	2	Armadillo/beta-catenin-like	repeat
Adaptin_N	PF01602.20	gi|257051804|ref|YP_003129637.1|	-	0.21	10.1	0.0	0.34	9.4	0.0	1.4	1	0	0	1	1	1	0	Adaptin	N	terminal	region
CDP-OH_P_transf	PF01066.21	gi|257051805|ref|YP_003129638.1|	-	3.9e-11	43.6	2.0	3.9e-11	43.6	2.0	2.6	2	1	0	2	2	2	1	CDP-alcohol	phosphatidyltransferase
Cyt_bd_oxida_II	PF02322.15	gi|257051805|ref|YP_003129638.1|	-	5.5e-05	22.7	11.9	5.5e-05	22.7	11.9	1.8	1	1	1	2	2	2	1	Cytochrome	bd	terminal	oxidase	subunit	II
Copper-bind	PF00127.20	gi|257051806|ref|YP_003129639.1|	-	3.7e-13	49.7	0.0	7e-13	48.9	0.0	1.4	1	1	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.6	gi|257051806|ref|YP_003129639.1|	-	4.7e-05	23.4	0.0	0.091	12.9	0.0	2.1	2	0	0	2	2	2	2	Cupredoxin-like	domain
TAT_signal	PF10518.9	gi|257051806|ref|YP_003129639.1|	-	0.0029	17.4	2.5	0.0059	16.4	2.5	1.6	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
PKD	PF00801.20	gi|257051806|ref|YP_003129639.1|	-	0.24	11.3	6.5	0.54	10.1	6.5	1.5	1	1	0	1	1	1	0	PKD	domain
Ribosomal_S3Ae	PF01015.18	gi|257051807|ref|YP_003129640.1|	-	6.2e-60	202.3	0.0	7.5e-60	202.0	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	S3Ae	family
DUF2887	PF11103.8	gi|257051807|ref|YP_003129640.1|	-	0.027	14.5	0.3	0.045	13.8	0.3	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2887)
DUF2399	PF09664.10	gi|257051807|ref|YP_003129640.1|	-	0.033	14.1	0.4	0.059	13.3	0.4	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	C-terminus	(DUF2399)
Pcc1	PF09341.10	gi|257051808|ref|YP_003129641.1|	-	0.051	13.7	2.7	0.061	13.5	2.7	1.1	1	0	0	1	1	1	0	Transcription	factor	Pcc1
DUF3107	PF11305.8	gi|257051808|ref|YP_003129641.1|	-	0.23	11.7	1.8	0.33	11.2	1.2	1.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3107)
TPR_14	PF13428.6	gi|257051809|ref|YP_003129642.1|	-	0.033	15.0	0.6	0.033	15.0	0.6	4.9	5	0	0	5	5	5	0	Tetratricopeptide	repeat
Ribosomal_S13_N	PF08069.12	gi|257051810|ref|YP_003129643.1|	-	2.1e-20	72.5	0.1	3.1e-20	72.0	0.1	1.3	1	0	0	1	1	1	1	Ribosomal	S13/S15	N-terminal	domain
Ribosomal_S15	PF00312.22	gi|257051810|ref|YP_003129643.1|	-	2.8e-13	49.9	0.1	4.3e-13	49.3	0.1	1.3	1	0	0	1	1	1	1	Ribosomal	protein	S15
Arch_flagellin	PF01917.16	gi|257051812|ref|YP_003129645.1|	-	0.058	13.6	1.0	0.092	12.9	1.0	1.2	1	0	0	1	1	1	0	Archaebacterial	flagellin
DUF963	PF06131.11	gi|257051813|ref|YP_003129646.1|	-	0.021	14.3	0.4	0.038	13.4	0.4	1.4	1	0	0	1	1	1	0	Schizosaccharomyces	pombe	repeat	of	unknown	function	(DUF963)
Asn_synthase	PF00733.21	gi|257051817|ref|YP_003129650.1|	-	4.1e-28	99.1	5.5	1.5e-16	61.0	1.2	2.1	1	1	1	2	2	2	2	Asparagine	synthase
HemolysinCabind	PF00353.19	gi|257051817|ref|YP_003129650.1|	-	0.26	11.3	1.0	0.62	10.1	0.3	1.9	2	0	0	2	2	2	0	RTX	calcium-binding	nonapeptide	repeat	(4	copies)
PHP_C	PF13263.6	gi|257051818|ref|YP_003129651.1|	-	1.4e-23	82.4	0.7	4.6e-23	80.7	0.3	2.0	2	0	0	2	2	2	1	PHP-associated
PHP	PF02811.19	gi|257051818|ref|YP_003129651.1|	-	7.3e-08	32.9	0.0	8.3e-08	32.7	0.0	1.2	1	1	0	1	1	1	1	PHP	domain
Radical_SAM	PF04055.21	gi|257051819|ref|YP_003129652.1|	-	1.6e-17	64.4	0.3	5.8e-17	62.6	0.1	2.0	1	1	1	2	2	2	1	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|257051819|ref|YP_003129652.1|	-	1.7e-06	28.3	0.0	4.8e-06	26.9	0.0	1.6	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
SPASM	PF13186.6	gi|257051819|ref|YP_003129652.1|	-	5.7e-06	26.8	0.0	1.5e-05	25.4	0.0	1.7	2	0	0	2	2	2	1	Iron-sulfur	cluster-binding	domain
Fer4_14	PF13394.6	gi|257051819|ref|YP_003129652.1|	-	0.028	14.5	0.0	0.08	13.1	0.0	1.8	1	0	0	1	1	1	0	4Fe-4S	single	cluster	domain
OmpA	PF00691.20	gi|257051819|ref|YP_003129652.1|	-	0.2	12.1	0.0	0.57	10.6	0.0	1.8	1	0	0	1	1	1	0	OmpA	family
PaaB	PF06243.11	gi|257051820|ref|YP_003129653.1|	-	2.2e-06	27.8	0.0	2.7e-06	27.5	0.0	1.1	1	0	0	1	1	1	1	Phenylacetic	acid	degradation	B
HTH_20	PF12840.7	gi|257051821|ref|YP_003129654.1|	-	1.3e-11	44.3	0.3	2.8e-11	43.3	0.2	1.6	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|257051821|ref|YP_003129654.1|	-	6.5e-06	25.9	0.0	1.4e-05	24.8	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
TrmB	PF01978.19	gi|257051821|ref|YP_003129654.1|	-	0.0047	16.8	0.0	0.0081	16.0	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
DUF742	PF05331.11	gi|257051821|ref|YP_003129654.1|	-	0.035	13.9	0.1	0.048	13.5	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF742)
HTH_7	PF02796.15	gi|257051821|ref|YP_003129654.1|	-	0.056	13.5	0.0	0.15	12.1	0.0	1.7	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	resolvase
FUR	PF01475.19	gi|257051821|ref|YP_003129654.1|	-	0.065	13.4	0.0	0.071	13.3	0.0	1.3	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
HTH_5	PF01022.20	gi|257051821|ref|YP_003129654.1|	-	0.13	12.2	0.0	0.2	11.6	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
DUF4199	PF13858.6	gi|257051822|ref|YP_003129655.1|	-	0.34	11.3	6.4	0.12	12.8	4.0	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF4199)
COX14	PF14880.6	gi|257051822|ref|YP_003129655.1|	-	1.7	8.5	5.5	0.96	9.3	0.2	2.2	2	0	0	2	2	2	0	Cytochrome	oxidase	c	assembly
Copper-bind	PF00127.20	gi|257051824|ref|YP_003129657.1|	-	1.9e-13	50.7	0.0	6.6e-13	48.9	0.0	1.8	1	1	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.6	gi|257051824|ref|YP_003129657.1|	-	0.0066	16.5	0.0	0.0093	16.1	0.0	1.3	1	0	0	1	1	1	1	Cupredoxin-like	domain
DUF4690	PF15756.5	gi|257051824|ref|YP_003129657.1|	-	0.13	12.9	0.8	0.21	12.2	0.2	1.7	2	0	0	2	2	2	0	Small	Novel	Rich	in	Cartilage
ARGLU	PF15346.6	gi|257051825|ref|YP_003129658.1|	-	0.019	14.8	20.7	0.028	14.3	6.6	2.1	1	1	1	2	2	2	0	Arginine	and	glutamate-rich	1
EnY2	PF10163.9	gi|257051825|ref|YP_003129658.1|	-	0.66	10.4	10.1	6.5	7.2	1.7	2.4	1	1	1	2	2	2	0	Transcription	factor	e(y)2
Minor_tail_Z	PF06763.11	gi|257051825|ref|YP_003129658.1|	-	0.75	9.6	2.7	6.5	6.5	0.6	2.1	1	1	1	2	2	2	0	Prophage	minor	tail	protein	Z	(GPZ)
DUF826	PF05696.11	gi|257051825|ref|YP_003129658.1|	-	1.3	9.2	11.4	12	6.1	0.4	3.0	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF826)
YpjP	PF14005.6	gi|257051825|ref|YP_003129658.1|	-	1.8	8.6	5.9	10	6.2	5.9	1.9	1	1	0	1	1	1	0	YpjP-like	protein
ATP-cone	PF03477.16	gi|257051825|ref|YP_003129658.1|	-	4.5	7.9	9.4	2.1e+02	2.5	9.4	2.4	1	1	0	1	1	1	0	ATP	cone	domain
DUF1476	PF07345.11	gi|257051825|ref|YP_003129658.1|	-	5.5	7.4	11.3	4.1	7.8	4.7	2.5	2	1	1	3	3	3	0	ATPase	inhibitor	subunit	zeta
Peptidase_M29	PF02073.15	gi|257051826|ref|YP_003129659.1|	-	5.9e-64	216.3	0.0	7.1e-64	216.1	0.0	1.0	1	0	0	1	1	1	1	Thermophilic	metalloprotease	(M29)
ParE_toxin	PF05016.15	gi|257051827|ref|YP_003129660.1|	-	0.00038	21.0	0.0	0.00068	20.2	0.0	1.4	1	1	0	1	1	1	1	ParE	toxin	of	type	II	toxin-antitoxin	system,	parDE
RHH_1	PF01402.21	gi|257051828|ref|YP_003129661.1|	-	0.0036	17.2	0.0	0.007	16.3	0.0	1.4	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
HicB_lk_antitox	PF15919.5	gi|257051828|ref|YP_003129661.1|	-	0.011	15.9	0.0	0.02	15.0	0.0	1.4	1	0	0	1	1	1	0	HicB_like	antitoxin	of	bacterial	toxin-antitoxin	system
DUF3201	PF11447.8	gi|257051828|ref|YP_003129661.1|	-	0.089	12.3	0.0	0.11	12.1	0.0	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3201)
p450	PF00067.22	gi|257051829|ref|YP_003129662.1|	-	7.3e-83	278.8	0.0	8.9e-83	278.6	0.0	1.0	1	0	0	1	1	1	1	Cytochrome	P450
HTH_10	PF04967.12	gi|257051830|ref|YP_003129663.1|	-	1.6e-15	56.6	0.1	2.5e-15	56.0	0.1	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
LacI	PF00356.21	gi|257051830|ref|YP_003129663.1|	-	0.0054	16.5	1.7	0.015	15.0	1.7	1.8	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	lacI	family
HTH_23	PF13384.6	gi|257051830|ref|YP_003129663.1|	-	0.012	15.4	0.0	0.023	14.5	0.0	1.5	1	0	0	1	1	1	0	Homeodomain-like	domain
ILVD_EDD	PF00920.21	gi|257051831|ref|YP_003129664.1|	-	3.1e-208	692.6	0.0	3.5e-208	692.4	0.0	1.0	1	0	0	1	1	1	1	Dehydratase	family
MatE	PF01554.18	gi|257051832|ref|YP_003129665.1|	-	3.6e-58	195.8	34.9	1.4e-33	115.8	12.0	2.4	2	0	0	2	2	2	2	MatE
YniB	PF14002.6	gi|257051832|ref|YP_003129665.1|	-	0.063	13.1	0.5	0.24	11.1	0.0	2.1	2	0	0	2	2	2	0	YniB-like	protein
Polysacc_synt_C	PF14667.6	gi|257051832|ref|YP_003129665.1|	-	0.21	11.7	44.6	0.14	12.3	22.0	5.1	3	2	0	3	3	3	0	Polysaccharide	biosynthesis	C-terminal	domain
TetR_C_6	PF13977.6	gi|257051833|ref|YP_003129666.1|	-	2.1e-17	63.4	2.3	2.1e-17	63.4	2.3	1.7	2	1	0	2	2	2	1	BetI-type	transcriptional	repressor,	C-terminal
TetR_N	PF00440.23	gi|257051833|ref|YP_003129666.1|	-	1.2e-09	37.8	0.7	2.1e-09	37.0	0.7	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
TetR_C_24	PF17932.1	gi|257051833|ref|YP_003129666.1|	-	7.8e-08	32.6	0.1	1.7e-07	31.5	0.1	1.6	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_27	PF17935.1	gi|257051833|ref|YP_003129666.1|	-	2e-05	24.6	0.5	6.4e-05	23.0	0.5	2.1	1	1	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_17	PF17922.1	gi|257051833|ref|YP_003129666.1|	-	0.0019	18.3	0.0	0.0053	16.8	0.0	1.8	2	0	0	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_25	PF17933.1	gi|257051833|ref|YP_003129666.1|	-	0.0028	17.9	0.1	0.007	16.7	0.1	1.7	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_7	PF14246.6	gi|257051833|ref|YP_003129666.1|	-	0.0078	16.2	1.0	0.019	15.0	0.3	1.9	2	0	0	2	2	2	1	AefR-like	transcriptional	repressor,	C-terminal	domain
Helicase_RecD	PF05127.14	gi|257051834|ref|YP_003129667.1|	-	1.4e-48	165.1	0.0	3.4e-48	163.8	0.0	1.7	2	0	0	2	2	2	1	Helicase
GNAT_acetyltr_2	PF13718.6	gi|257051834|ref|YP_003129667.1|	-	6e-43	146.9	0.1	5.2e-25	88.2	0.0	2.2	1	1	1	2	2	2	2	GNAT	acetyltransferase	2
DUF1726	PF08351.11	gi|257051834|ref|YP_003129667.1|	-	6.4e-27	93.3	0.0	2.6e-26	91.4	0.0	2.0	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1726)
AAA_30	PF13604.6	gi|257051834|ref|YP_003129667.1|	-	8.8e-06	25.6	2.4	8.8e-06	25.6	2.4	2.0	2	0	0	2	2	2	1	AAA	domain
Acetyltransf_10	PF13673.7	gi|257051834|ref|YP_003129667.1|	-	0.003	17.5	0.0	0.007	16.3	0.0	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|257051834|ref|YP_003129667.1|	-	0.019	15.4	0.0	0.082	13.3	0.0	2.1	2	0	0	2	2	2	0	Acetyltransferase	(GNAT)	domain
Ribosomal_L7Ae	PF01248.26	gi|257051835|ref|YP_003129668.1|	-	1.2e-26	92.2	0.0	1.5e-26	91.9	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L7Ae/L30e/S12e/Gadd45	family
PELOTA_1	PF15608.6	gi|257051835|ref|YP_003129668.1|	-	7.5e-05	22.5	0.0	0.0001	22.1	0.0	1.2	1	0	0	1	1	1	1	PELOTA	RNA	binding	domain
eRF1_3	PF03465.15	gi|257051835|ref|YP_003129668.1|	-	0.024	15.1	0.1	0.024	15.1	0.1	1.2	1	0	0	1	1	1	0	eRF1	domain	3
DUF1269	PF06897.12	gi|257051835|ref|YP_003129668.1|	-	0.047	14.0	3.3	1	9.7	0.1	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1269)
Ribosomal_S28e	PF01200.18	gi|257051836|ref|YP_003129669.1|	-	9.3e-28	96.0	2.9	1e-27	95.9	2.9	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S28e
Ribosomal_L24e	PF01246.20	gi|257051837|ref|YP_003129670.1|	-	1.4e-21	76.5	0.0	1.8e-21	76.1	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L24e
zf-FCS	PF06467.14	gi|257051837|ref|YP_003129670.1|	-	0.0003	20.7	1.8	0.00046	20.1	1.8	1.2	1	0	0	1	1	1	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
YHS	PF04945.13	gi|257051837|ref|YP_003129670.1|	-	0.0093	16.0	0.3	0.017	15.2	0.3	1.3	1	0	0	1	1	1	1	YHS	domain
NOA36	PF06524.12	gi|257051837|ref|YP_003129670.1|	-	0.059	12.7	19.6	0.083	12.2	19.6	1.3	1	0	0	1	1	1	0	NOA36	protein
Arc_trans_TRASH	PF08394.10	gi|257051837|ref|YP_003129670.1|	-	0.18	12.2	1.4	0.31	11.4	1.4	1.4	1	1	0	1	1	1	0	Archaeal	TRASH	domain
Cwf_Cwc_15	PF04889.12	gi|257051837|ref|YP_003129670.1|	-	0.19	11.4	17.3	0.22	11.2	17.3	1.0	1	0	0	1	1	1	0	Cwf15/Cwc15	cell	cycle	control	protein
NDK	PF00334.19	gi|257051838|ref|YP_003129671.1|	-	9.1e-56	187.6	0.0	1.1e-55	187.4	0.0	1.0	1	0	0	1	1	1	1	Nucleoside	diphosphate	kinase
Usp	PF00582.26	gi|257051839|ref|YP_003129672.1|	-	5.1e-37	127.5	0.5	5.9e-37	127.3	0.5	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
Amidohydro_1	PF01979.20	gi|257051840|ref|YP_003129673.1|	-	3e-30	105.7	0.1	3.7e-20	72.5	0.0	2.1	1	1	1	2	2	2	2	Amidohydrolase	family
A_deaminase	PF00962.22	gi|257051840|ref|YP_003129673.1|	-	1.2e-06	28.1	0.0	1.7e-06	27.6	0.0	1.1	1	0	0	1	1	1	1	Adenosine/AMP	deaminase
Amidohydro_3	PF07969.11	gi|257051840|ref|YP_003129673.1|	-	0.00021	20.9	7.3	0.0006	19.4	1.5	2.7	1	1	2	3	3	3	2	Amidohydrolase	family
Molybdopterin_N	PF18364.1	gi|257051840|ref|YP_003129673.1|	-	0.15	12.1	0.2	4.4	7.4	0.0	2.6	2	0	0	2	2	2	0	Molybdopterin	oxidoreductase	N-terminal	domain
DUF2178	PF09946.9	gi|257051842|ref|YP_003129675.1|	-	0.0004	20.5	0.0	0.00087	19.4	0.0	1.6	1	1	1	2	2	2	1	Predicted	membrane	protein	(DUF2178)
DUF4079	PF13301.6	gi|257051842|ref|YP_003129675.1|	-	0.0076	16.4	0.9	0.01	16.0	0.1	1.6	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF4079)
DUF2157	PF09925.9	gi|257051842|ref|YP_003129675.1|	-	0.015	15.1	2.3	0.036	13.9	2.3	1.6	1	1	0	1	1	1	0	Predicted	membrane	protein	(DUF2157)
DUF3341	PF11821.8	gi|257051842|ref|YP_003129675.1|	-	0.68	9.6	0.1	0.68	9.6	0.1	2.2	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF3341)
DUF2178	PF09946.9	gi|257051843|ref|YP_003129676.1|	-	3.5e-05	23.9	0.4	5.7e-05	23.2	0.4	1.4	1	1	0	1	1	1	1	Predicted	membrane	protein	(DUF2178)
DUF2721	PF11026.8	gi|257051843|ref|YP_003129676.1|	-	0.05	13.5	0.1	0.05	13.5	0.1	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2721)
DUF3796	PF12676.7	gi|257051843|ref|YP_003129676.1|	-	0.062	13.7	0.8	0.24	11.8	0.6	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3796)
DUF1129	PF06570.11	gi|257051843|ref|YP_003129676.1|	-	0.65	9.4	4.0	0.38	10.2	0.8	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1129)
HTH_3	PF01381.22	gi|257051844|ref|YP_003129677.1|	-	3.9e-15	55.6	0.0	4.4e-15	55.5	0.0	1.1	1	0	0	1	1	1	1	Helix-turn-helix
HTH_31	PF13560.6	gi|257051844|ref|YP_003129677.1|	-	1.8e-09	37.8	0.0	2.1e-09	37.6	0.0	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_26	PF13443.6	gi|257051844|ref|YP_003129677.1|	-	5.1e-09	36.4	0.0	6e-09	36.2	0.0	1.0	1	0	0	1	1	1	1	Cro/C1-type	HTH	DNA-binding	domain
HTH_19	PF12844.7	gi|257051844|ref|YP_003129677.1|	-	6.5e-06	26.1	0.0	7.7e-06	25.8	0.0	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|257051844|ref|YP_003129677.1|	-	0.00015	21.2	0.0	0.00021	20.8	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.12	gi|257051844|ref|YP_003129677.1|	-	0.00037	20.4	0.0	0.00064	19.6	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
Sigma70_r4	PF04545.16	gi|257051844|ref|YP_003129677.1|	-	0.0025	17.3	0.0	0.0036	16.8	0.0	1.3	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_Crp_2	PF13545.6	gi|257051844|ref|YP_003129677.1|	-	0.0027	17.7	0.0	0.0035	17.3	0.0	1.2	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_25	PF13413.6	gi|257051844|ref|YP_003129677.1|	-	0.013	15.3	0.1	0.018	14.9	0.1	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF1323	PF07037.11	gi|257051844|ref|YP_003129677.1|	-	0.014	15.8	0.0	0.018	15.4	0.0	1.1	1	0	0	1	1	1	0	Putative	transcription	regulator	(DUF1323)
MarR_2	PF12802.7	gi|257051844|ref|YP_003129677.1|	-	0.014	15.2	0.0	0.024	14.5	0.0	1.4	1	0	0	1	1	1	0	MarR	family
YdaS_antitoxin	PF15943.5	gi|257051844|ref|YP_003129677.1|	-	0.015	15.1	0.0	0.041	13.8	0.0	1.6	1	1	1	2	2	2	0	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
HTH_23	PF13384.6	gi|257051844|ref|YP_003129677.1|	-	0.021	14.6	0.0	0.03	14.1	0.0	1.2	1	0	0	1	1	1	0	Homeodomain-like	domain
MerR	PF00376.23	gi|257051844|ref|YP_003129677.1|	-	0.022	14.5	0.0	0.029	14.1	0.0	1.2	1	0	0	1	1	1	0	MerR	family	regulatory	protein
GntR	PF00392.21	gi|257051844|ref|YP_003129677.1|	-	0.022	14.4	0.0	0.03	14.0	0.0	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_AsnC-type	PF13404.6	gi|257051844|ref|YP_003129677.1|	-	0.04	13.7	0.0	0.061	13.2	0.0	1.4	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
HTH_7	PF02796.15	gi|257051844|ref|YP_003129677.1|	-	0.14	12.3	0.0	0.4	10.8	0.0	1.7	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	resolvase
HD	PF01966.22	gi|257051845|ref|YP_003129678.1|	-	8.5e-12	45.4	2.1	2.3e-11	44.0	2.1	1.8	1	0	0	1	1	1	1	HD	domain
Clp_N	PF02861.20	gi|257051845|ref|YP_003129678.1|	-	0.0033	17.5	0.9	2.3	8.4	0.1	3.9	4	0	0	4	4	4	2	Clp	amino	terminal	domain,	pathogenicity	island	component
ParD_antitoxin	PF03693.14	gi|257051845|ref|YP_003129678.1|	-	0.043	14.2	1.6	0.73	10.3	0.1	2.4	2	0	0	2	2	2	0	Bacterial	antitoxin	of	ParD	toxin-antitoxin	type	II	system	and	RHH
DSPc	PF00782.20	gi|257051846|ref|YP_003129679.1|	-	0.0016	18.2	0.0	0.0021	17.9	0.0	1.2	1	0	0	1	1	1	1	Dual	specificity	phosphatase,	catalytic	domain
Y_phosphatase	PF00102.27	gi|257051846|ref|YP_003129679.1|	-	0.18	11.4	0.0	0.23	11.0	0.0	1.1	1	0	0	1	1	1	0	Protein-tyrosine	phosphatase
UPF0052	PF01933.18	gi|257051847|ref|YP_003129680.1|	-	3.3e-45	154.6	0.0	4.2e-45	154.2	0.0	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0052
Dus	PF01207.17	gi|257051848|ref|YP_003129681.1|	-	3.8e-13	49.2	1.1	1.9e-12	46.9	1.1	1.9	1	1	0	1	1	1	1	Dihydrouridine	synthase	(Dus)
His_biosynth	PF00977.21	gi|257051848|ref|YP_003129681.1|	-	3.4e-05	23.4	0.6	0.00027	20.5	0.5	2.1	1	1	0	1	1	1	1	Histidine	biosynthesis	protein
PEP_mutase	PF13714.6	gi|257051848|ref|YP_003129681.1|	-	0.0073	15.8	4.0	0.011	15.2	4.0	1.3	1	0	0	1	1	1	1	Phosphoenolpyruvate	phosphomutase
Radical_SAM	PF04055.21	gi|257051848|ref|YP_003129681.1|	-	0.011	16.1	0.1	0.55	10.6	0.1	2.6	1	1	1	2	2	2	0	Radical	SAM	superfamily
G3P_antiterm	PF04309.12	gi|257051848|ref|YP_003129681.1|	-	0.014	14.8	0.2	0.023	14.1	0.2	1.4	1	0	0	1	1	1	0	Glycerol-3-phosphate	responsive	antiterminator
QRPTase_C	PF01729.19	gi|257051848|ref|YP_003129681.1|	-	0.017	14.9	0.4	0.026	14.3	0.4	1.2	1	0	0	1	1	1	0	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
NMO	PF03060.15	gi|257051848|ref|YP_003129681.1|	-	0.017	14.5	1.9	0.029	13.7	1.9	1.6	1	1	0	1	1	1	0	Nitronate	monooxygenase
FMN_dh	PF01070.18	gi|257051848|ref|YP_003129681.1|	-	0.018	14.1	0.9	0.04	12.9	0.7	1.7	1	1	0	1	1	1	0	FMN-dependent	dehydrogenase
T7SS_ESX_EspC	PF10824.8	gi|257051848|ref|YP_003129681.1|	-	0.023	15.2	0.6	0.023	15.2	0.6	2.0	2	0	0	2	2	2	0	Excreted	virulence	factor	EspC,	type	VII	ESX	diderm
IMPDH	PF00478.25	gi|257051848|ref|YP_003129681.1|	-	0.28	10.2	2.8	0.42	9.6	2.8	1.3	1	1	0	1	1	1	0	IMP	dehydrogenase	/	GMP	reductase	domain
CitG	PF01874.16	gi|257051849|ref|YP_003129682.1|	-	4.1e-65	220.2	1.1	4.6e-65	220.1	1.1	1.0	1	0	0	1	1	1	1	ATP:dephospho-CoA	triphosphoribosyl	transferase
DUF447	PF04289.12	gi|257051850|ref|YP_003129683.1|	-	5.2e-41	140.3	0.1	6e-41	140.1	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF447)
Ribosomal_S17e	PF00833.18	gi|257051851|ref|YP_003129684.1|	-	4.9e-14	52.3	0.0	5.8e-14	52.1	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	S17
MitoNEET_N	PF10660.9	gi|257051852|ref|YP_003129685.1|	-	1.8	8.6	5.9	4.9	7.3	0.0	4.0	4	0	0	4	4	4	0	Iron-containing	outer	mitochondrial	membrane	protein	N-terminus
Semialdhyde_dh	PF01118.24	gi|257051853|ref|YP_003129686.1|	-	4.4e-33	114.3	0.0	9.7e-33	113.2	0.0	1.6	2	0	0	2	2	2	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
Semialdhyde_dhC	PF02774.18	gi|257051853|ref|YP_003129686.1|	-	2.4e-32	112.5	0.0	3.4e-32	112.0	0.0	1.2	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	dimerisation	domain
DapB_N	PF01113.20	gi|257051853|ref|YP_003129686.1|	-	0.00055	20.1	0.0	0.0013	18.9	0.0	1.7	1	1	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
DXP_reductoisom	PF02670.16	gi|257051853|ref|YP_003129686.1|	-	0.0012	19.5	0.0	0.0024	18.6	0.0	1.4	1	0	0	1	1	1	1	1-deoxy-D-xylulose	5-phosphate	reductoisomerase
Gp_dh_C	PF02800.20	gi|257051853|ref|YP_003129686.1|	-	0.0067	16.0	0.0	0.15	11.6	0.0	2.2	2	0	0	2	2	2	1	Glyceraldehyde	3-phosphate	dehydrogenase,	C-terminal	domain
Sacchrp_dh_NADP	PF03435.18	gi|257051853|ref|YP_003129686.1|	-	0.08	13.2	0.0	0.14	12.4	0.0	1.4	1	0	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
Subtilosin_A	PF11420.8	gi|257051853|ref|YP_003129686.1|	-	0.17	11.9	0.2	2.7	8.0	0.1	2.5	2	0	0	2	2	2	0	Bacteriocin	subtilosin	A
Phage_holin_8	PF16931.5	gi|257051855|ref|YP_003129688.1|	-	0.15	12.1	4.9	0.17	11.9	0.2	2.3	2	0	0	2	2	2	0	Putative	phage	holin
DUF4781	PF16013.5	gi|257051855|ref|YP_003129688.1|	-	0.39	9.5	2.7	0.24	10.2	0.9	1.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4781)
2-Hacid_dh_C	PF02826.19	gi|257051856|ref|YP_003129689.1|	-	4.6e-53	179.2	0.0	6.2e-53	178.8	0.0	1.2	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.30	gi|257051856|ref|YP_003129689.1|	-	1.6e-14	53.7	0.0	2e-14	53.4	0.0	1.0	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
TrkA_N	PF02254.18	gi|257051856|ref|YP_003129689.1|	-	0.014	15.6	0.2	0.28	11.5	0.1	2.5	3	0	0	3	3	3	0	TrkA-N	domain
ThiF	PF00899.21	gi|257051856|ref|YP_003129689.1|	-	0.047	13.1	0.0	0.075	12.4	0.0	1.3	1	0	0	1	1	1	0	ThiF	family
DUF4440	PF14534.6	gi|257051856|ref|YP_003129689.1|	-	0.083	13.3	0.0	4.4	7.8	0.0	3.1	4	0	0	4	4	4	0	Domain	of	unknown	function	(DUF4440)
ApbA	PF02558.16	gi|257051856|ref|YP_003129689.1|	-	0.11	12.1	0.3	0.33	10.6	0.3	1.8	2	0	0	2	2	2	0	Ketopantoate	reductase	PanE/ApbA
F420_oxidored	PF03807.17	gi|257051856|ref|YP_003129689.1|	-	0.16	12.6	0.1	0.47	11.1	0.0	1.8	2	0	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
Response_reg	PF00072.24	gi|257051857|ref|YP_003129690.1|	-	1.3e-15	57.5	0.1	1.9e-15	57.0	0.1	1.3	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HalX	PF08663.10	gi|257051857|ref|YP_003129690.1|	-	5.8e-12	45.8	1.4	1.1e-11	44.8	0.7	1.8	1	1	1	2	2	2	1	HalX	domain
Peptidase_C32	PF05411.12	gi|257051857|ref|YP_003129690.1|	-	0.19	11.6	0.0	0.26	11.2	0.0	1.3	1	0	0	1	1	1	0	Equine	arteritis	virus	putative	proteinase
DAO	PF01266.24	gi|257051858|ref|YP_003129691.1|	-	4.9e-11	42.8	9.3	4e-07	29.9	0.6	2.1	1	1	0	2	2	2	2	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.14	gi|257051858|ref|YP_003129691.1|	-	3.4e-09	36.4	4.0	4.2e-06	26.2	0.2	2.8	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.19	gi|257051858|ref|YP_003129691.1|	-	2.5e-08	33.6	0.9	0.00065	19.0	0.1	2.1	2	0	0	2	2	2	2	FAD	binding	domain
HI0933_like	PF03486.14	gi|257051858|ref|YP_003129691.1|	-	2.2e-06	26.6	1.9	0.0018	17.0	2.1	2.3	2	0	0	2	2	2	2	HI0933-like	protein
NAD_binding_8	PF13450.6	gi|257051858|ref|YP_003129691.1|	-	2.6e-05	24.4	0.7	8.5e-05	22.7	0.7	1.9	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
FAD_oxidored	PF12831.7	gi|257051858|ref|YP_003129691.1|	-	5.6e-05	22.7	6.9	0.00011	21.7	6.9	1.7	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
Trp_halogenase	PF04820.14	gi|257051858|ref|YP_003129691.1|	-	8.5e-05	21.6	1.1	0.044	12.6	0.0	2.1	2	0	0	2	2	2	2	Tryptophan	halogenase
GIDA	PF01134.22	gi|257051858|ref|YP_003129691.1|	-	0.0002	20.6	0.5	0.00035	19.8	0.5	1.3	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
FAD_binding_2	PF00890.24	gi|257051858|ref|YP_003129691.1|	-	0.00038	19.7	2.5	0.00071	18.8	2.5	1.4	1	0	0	1	1	1	1	FAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|257051858|ref|YP_003129691.1|	-	0.0016	17.8	0.1	0.003	16.9	0.1	1.4	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
NAD_binding_9	PF13454.6	gi|257051858|ref|YP_003129691.1|	-	0.011	15.7	2.0	1	9.3	0.0	2.8	2	1	1	3	3	3	0	FAD-NAD(P)-binding
Pyr_redox	PF00070.27	gi|257051858|ref|YP_003129691.1|	-	0.043	14.4	0.1	0.64	10.6	0.4	2.4	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|257051858|ref|YP_003129691.1|	-	0.066	12.5	0.1	0.13	11.5	0.1	1.4	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.17	gi|257051858|ref|YP_003129691.1|	-	0.086	12.1	0.1	0.14	11.3	0.1	1.3	1	0	0	1	1	1	0	Thi4	family
XdhC_C	PF13478.6	gi|257051858|ref|YP_003129691.1|	-	0.086	13.3	0.0	3.3	8.2	0.0	2.8	2	1	1	3	3	3	0	XdhC	Rossmann	domain
Lycopene_cycl	PF05834.12	gi|257051858|ref|YP_003129691.1|	-	0.13	11.3	0.2	5.4	6.0	0.5	2.1	2	0	0	2	2	2	0	Lycopene	cyclase	protein
NAD_binding_7	PF13241.6	gi|257051858|ref|YP_003129691.1|	-	0.16	12.5	0.0	0.41	11.1	0.0	1.8	2	0	0	2	2	2	0	Putative	NAD(P)-binding
3HCDH_N	PF02737.18	gi|257051858|ref|YP_003129691.1|	-	6.6	6.6	5.6	0.48	10.3	0.4	1.7	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Acetyltransf_1	PF00583.25	gi|257051859|ref|YP_003129692.1|	-	7.6e-17	61.6	0.1	1e-16	61.2	0.1	1.2	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|257051859|ref|YP_003129692.1|	-	3.7e-10	39.8	0.0	4.7e-10	39.5	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|257051859|ref|YP_003129692.1|	-	1.7e-09	38.0	0.0	2.2e-09	37.6	0.0	1.3	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|257051859|ref|YP_003129692.1|	-	7.3e-06	25.9	0.0	1.4e-05	25.0	0.0	1.4	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_9	PF13527.7	gi|257051859|ref|YP_003129692.1|	-	2.4e-05	24.4	0.0	3e-05	24.1	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|257051859|ref|YP_003129692.1|	-	0.02	15.0	0.0	0.036	14.2	0.0	1.5	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
Acetyltransf_4	PF13420.7	gi|257051859|ref|YP_003129692.1|	-	0.056	13.6	0.0	0.069	13.3	0.0	1.2	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.6	gi|257051859|ref|YP_003129692.1|	-	0.077	12.7	0.2	0.19	11.4	0.0	1.6	2	0	0	2	2	2	0	Acetyltransferase	(GNAT)	domain
PanZ	PF12568.8	gi|257051859|ref|YP_003129692.1|	-	0.12	12.1	0.3	0.15	11.8	0.3	1.2	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain,	PanZ
NAD_binding_10	PF13460.6	gi|257051860|ref|YP_003129693.1|	-	1.5e-29	103.2	0.5	1.8e-29	102.9	0.5	1.0	1	0	0	1	1	1	1	NAD(P)H-binding
Epimerase	PF01370.21	gi|257051860|ref|YP_003129693.1|	-	4.1e-06	26.4	0.0	5.2e-06	26.1	0.0	1.3	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
NmrA	PF05368.13	gi|257051860|ref|YP_003129693.1|	-	9.9e-06	25.3	0.0	1.4e-05	24.8	0.0	1.2	1	0	0	1	1	1	1	NmrA-like	family
TrkA_N	PF02254.18	gi|257051860|ref|YP_003129693.1|	-	0.00056	20.2	0.1	0.00086	19.6	0.1	1.3	1	0	0	1	1	1	1	TrkA-N	domain
RmlD_sub_bind	PF04321.17	gi|257051860|ref|YP_003129693.1|	-	0.0032	16.6	0.1	0.005	16.0	0.1	1.3	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
adh_short	PF00106.25	gi|257051860|ref|YP_003129693.1|	-	0.039	13.4	0.1	0.039	13.4	0.1	1.5	2	0	0	2	2	2	0	short	chain	dehydrogenase
DapB_N	PF01113.20	gi|257051860|ref|YP_003129693.1|	-	0.077	13.1	0.2	0.12	12.5	0.2	1.5	1	1	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
DFP	PF04127.15	gi|257051860|ref|YP_003129693.1|	-	0.078	12.8	0.1	0.12	12.2	0.1	1.2	1	0	0	1	1	1	0	DNA	/	pantothenate	metabolism	flavoprotein
ApbA	PF02558.16	gi|257051860|ref|YP_003129693.1|	-	0.21	11.2	0.0	0.28	10.8	0.0	1.2	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
eIF-1a	PF01176.19	gi|257051862|ref|YP_003129695.1|	-	3.5e-20	71.6	0.3	4.4e-20	71.2	0.3	1.1	1	0	0	1	1	1	1	Translation	initiation	factor	1A	/	IF-1
Glyco_trans_1_4	PF13692.6	gi|257051863|ref|YP_003129696.1|	-	1.9e-14	54.2	0.0	6.5e-14	52.5	0.0	1.9	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|257051863|ref|YP_003129696.1|	-	2.2e-12	47.3	0.1	4.3e-12	46.3	0.1	1.5	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glycos_transf_1	PF00534.20	gi|257051863|ref|YP_003129696.1|	-	4.4e-12	45.9	0.0	2.4e-11	43.4	0.0	2.3	2	1	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.6	gi|257051863|ref|YP_003129696.1|	-	2e-07	31.6	0.1	4.4e-07	30.5	0.1	1.6	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|257051863|ref|YP_003129696.1|	-	8e-06	26.2	0.0	1.9e-05	24.9	0.0	1.7	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
eIF-5_eIF-2B	PF01873.17	gi|257051864|ref|YP_003129697.1|	-	1e-30	106.0	0.0	1.4e-30	105.6	0.0	1.2	1	0	0	1	1	1	1	Domain	found	in	IF2B/IF5
TRAM	PF01938.20	gi|257051864|ref|YP_003129697.1|	-	1.6e-07	31.2	0.6	2.5e-07	30.6	0.6	1.3	1	0	0	1	1	1	1	TRAM	domain
Lar_restr_allev	PF14354.6	gi|257051864|ref|YP_003129697.1|	-	0.032	14.6	0.2	0.065	13.6	0.2	1.6	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
zinc_ribbon_12	PF11331.8	gi|257051864|ref|YP_003129697.1|	-	0.065	13.0	0.2	0.12	12.2	0.2	1.4	1	0	0	1	1	1	0	Probable	zinc-ribbon	domain
DNA_RNApol_7kD	PF03604.13	gi|257051864|ref|YP_003129697.1|	-	0.46	10.2	2.3	3.3	7.4	2.9	2.0	1	1	1	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
KH_2	PF07650.17	gi|257051865|ref|YP_003129698.1|	-	6.2e-16	58.0	0.6	9.4e-11	41.4	0.2	2.1	1	1	1	2	2	2	2	KH	domain
KH_5	PF13184.6	gi|257051865|ref|YP_003129698.1|	-	1.1e-11	44.7	0.1	2e-10	40.6	0.0	2.2	2	0	0	2	2	2	1	NusA-like	KH	domain
KH_4	PF13083.6	gi|257051865|ref|YP_003129698.1|	-	8.4e-08	32.0	0.9	0.012	15.4	0.0	2.2	2	0	0	2	2	2	2	KH	domain
KH_1	PF00013.29	gi|257051865|ref|YP_003129698.1|	-	0.0024	17.7	0.0	0.025	14.4	0.0	2.2	2	0	0	2	2	2	1	KH	domain
RNA_pol_Rpb1_5	PF04998.17	gi|257051866|ref|YP_003129699.1|	-	4.6e-45	154.1	1.0	5.5e-37	127.7	0.3	2.2	2	0	0	2	2	2	2	RNA	polymerase	Rpb1,	domain	5
Intein_splicing	PF14890.6	gi|257051866|ref|YP_003129699.1|	-	1.8e-19	70.0	0.0	3.3e-19	69.1	0.0	1.5	1	0	0	1	1	1	1	Intein	splicing	domain
LAGLIDADG_3	PF14528.6	gi|257051866|ref|YP_003129699.1|	-	7.1e-15	55.1	0.3	2.4e-09	37.4	0.0	2.9	3	0	0	3	3	3	2	LAGLIDADG-like	domain
HHH_4	PF14490.6	gi|257051866|ref|YP_003129699.1|	-	0.051	13.6	0.1	0.44	10.6	0.0	2.4	2	0	0	2	2	2	0	Helix-hairpin-helix	containing	domain
DraK_HK_N	PF18092.1	gi|257051866|ref|YP_003129699.1|	-	2.8	8.4	14.5	19	5.8	0.0	4.6	4	1	0	4	4	4	0	DraK	Histidine	Kinase	N-terminal	domain
RNA_pol_Rpb1_1	PF04997.12	gi|257051867|ref|YP_003129700.1|	-	1.4e-104	349.8	0.0	3.1e-104	348.7	0.0	1.6	1	1	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	1
RNA_pol_Rpb1_2	PF00623.20	gi|257051867|ref|YP_003129700.1|	-	7.6e-68	227.9	0.2	1.2e-67	227.3	0.2	1.3	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	2
RNA_pol_Rpb1_4	PF05000.17	gi|257051867|ref|YP_003129700.1|	-	6.5e-33	112.9	0.0	1.4e-32	111.8	0.0	1.6	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	4
RNA_pol_Rpb1_3	PF04983.18	gi|257051867|ref|YP_003129700.1|	-	8.3e-30	103.8	0.0	1.4e-29	103.1	0.0	1.4	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	3
RNA_pol_Rpb1_5	PF04998.17	gi|257051867|ref|YP_003129700.1|	-	1.2e-25	90.5	0.0	2.1e-25	89.7	0.0	1.4	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	5
DnaJ-X	PF14308.6	gi|257051867|ref|YP_003129700.1|	-	0.16	11.4	0.0	0.38	10.2	0.0	1.5	1	0	0	1	1	1	0	X-domain	of	DnaJ-containing
RNA_pol_Rpb2_6	PF00562.28	gi|257051868|ref|YP_003129701.1|	-	5e-129	430.8	0.0	7.8e-129	430.1	0.0	1.3	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	6
RNA_pol_Rpb2_7	PF04560.20	gi|257051868|ref|YP_003129701.1|	-	2e-30	105.1	0.1	3.4e-30	104.3	0.1	1.4	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	7
RNA_pol_Rpb2_4	PF04566.13	gi|257051868|ref|YP_003129701.1|	-	1.6e-20	73.2	0.3	2.9e-20	72.3	0.3	1.5	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	4
RNA_pol_Rpb2_5	PF04567.17	gi|257051868|ref|YP_003129701.1|	-	2.5e-08	34.3	4.4	1e-07	32.4	4.4	2.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	5
NOB1_Zn_bind	PF08772.11	gi|257051868|ref|YP_003129701.1|	-	0.02	15.0	0.2	0.041	14.0	0.2	1.5	1	0	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
OrfB_Zn_ribbon	PF07282.11	gi|257051868|ref|YP_003129701.1|	-	0.042	13.8	2.1	0.081	12.9	2.1	1.4	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zf-NADH-PPase	PF09297.11	gi|257051868|ref|YP_003129701.1|	-	0.16	11.6	2.8	0.2	11.3	1.3	1.9	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
Auto_anti-p27	PF06677.12	gi|257051868|ref|YP_003129701.1|	-	1.1	9.5	3.4	2	8.7	3.4	1.4	1	0	0	1	1	1	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
RNA_pol_Rpb2_1	PF04563.15	gi|257051869|ref|YP_003129702.1|	-	1.2e-49	168.5	0.1	1.5e-49	168.2	0.1	1.1	1	0	0	1	1	1	1	RNA	polymerase	beta	subunit
RNA_pol_Rpb2_2	PF04561.14	gi|257051869|ref|YP_003129702.1|	-	2.1e-28	99.3	0.1	3.4e-28	98.6	0.1	1.3	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	2
RNA_pol_Rpb2_3	PF04565.16	gi|257051869|ref|YP_003129702.1|	-	1.6e-24	85.9	0.0	3.1e-24	84.9	0.0	1.5	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	3
RNA_pol_Rpb5_C	PF01191.19	gi|257051870|ref|YP_003129703.1|	-	8.1e-25	86.5	0.1	9.1e-25	86.3	0.1	1.0	1	0	0	1	1	1	1	RNA	polymerase	Rpb5,	C-terminal	domain
DUF3006	PF11213.8	gi|257051870|ref|YP_003129703.1|	-	0.055	13.7	0.4	1.4	9.2	0.4	2.2	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3006)
DUF1653	PF07866.11	gi|257051870|ref|YP_003129703.1|	-	0.18	12.2	0.1	0.25	11.7	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1653)
zf-ribbon_3	PF13248.6	gi|257051871|ref|YP_003129704.1|	-	2.2e-06	26.8	0.7	4.2e-06	26.0	0.7	1.5	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.7	gi|257051871|ref|YP_003129704.1|	-	6.9e-06	26.0	0.6	1.1e-05	25.4	0.6	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|257051871|ref|YP_003129704.1|	-	9.8e-06	25.1	1.9	1.6e-05	24.4	1.9	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
zinc_ribbon_15	PF17032.5	gi|257051871|ref|YP_003129704.1|	-	0.032	15.0	2.2	0.044	14.5	2.2	1.2	1	0	0	1	1	1	0	zinc-ribbon	family
SKA2	PF16740.5	gi|257051872|ref|YP_003129705.1|	-	0.0079	16.0	0.1	2.2	8.1	0.3	2.6	2	1	1	3	3	3	1	Spindle	and	kinetochore-associated	protein	2
Rab5-bind	PF09311.11	gi|257051872|ref|YP_003129705.1|	-	0.018	14.4	0.2	0.036	13.4	0.2	1.4	1	0	0	1	1	1	0	Rabaptin-like	protein
DUF4140	PF13600.6	gi|257051872|ref|YP_003129705.1|	-	0.023	15.1	1.1	0.092	13.2	0.1	2.4	2	0	0	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
HalX	PF08663.10	gi|257051872|ref|YP_003129705.1|	-	0.041	14.2	8.2	0.041	14.2	8.2	3.0	3	0	0	3	3	3	0	HalX	domain
Spectrin	PF00435.21	gi|257051872|ref|YP_003129705.1|	-	0.11	13.0	1.2	8.6	6.9	0.3	2.4	2	0	0	2	2	2	0	Spectrin	repeat
ZapB	PF06005.12	gi|257051872|ref|YP_003129705.1|	-	0.23	11.9	3.3	10	6.7	0.4	2.4	2	0	0	2	2	2	0	Cell	division	protein	ZapB
CCDC-167	PF15188.6	gi|257051872|ref|YP_003129705.1|	-	0.26	11.6	4.1	5	7.5	0.9	2.3	2	0	0	2	2	2	0	Coiled-coil	domain-containing	protein	167
APG6_N	PF17675.1	gi|257051872|ref|YP_003129705.1|	-	0.41	11.2	5.7	0.087	13.4	0.8	2.0	2	0	0	2	2	2	0	Apg6	coiled-coil	region
DivIC	PF04977.15	gi|257051872|ref|YP_003129705.1|	-	1.2	9.0	6.2	0.25	11.1	1.9	1.9	2	0	0	2	2	2	0	Septum	formation	initiator
Pup	PF05639.11	gi|257051872|ref|YP_003129705.1|	-	1.3	10.0	4.5	1.7	9.6	1.6	2.5	2	0	0	2	2	2	0	Pup-like	protein
DUF3958	PF13125.6	gi|257051872|ref|YP_003129705.1|	-	2.5	8.4	6.4	0.25	11.5	1.4	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3958)
FUSC	PF04632.12	gi|257051872|ref|YP_003129705.1|	-	3.2	6.2	4.6	2.2	6.7	0.8	1.9	2	0	0	2	2	2	0	Fusaric	acid	resistance	protein	family
DUF2312	PF10073.9	gi|257051872|ref|YP_003129705.1|	-	3.7	7.3	5.8	1.6	8.4	2.7	2.0	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2312)
Aminotran_5	PF00266.19	gi|257051873|ref|YP_003129706.1|	-	1.1e-56	192.3	0.0	1.9e-56	191.7	0.0	1.3	1	1	0	1	1	1	1	Aminotransferase	class-V
Aminotran_1_2	PF00155.21	gi|257051873|ref|YP_003129706.1|	-	4.9e-12	45.7	0.0	5.3e-11	42.3	0.0	2.0	1	1	0	1	1	1	1	Aminotransferase	class	I	and	II
EF-hand_5	PF13202.6	gi|257051873|ref|YP_003129706.1|	-	0.16	11.5	0.0	0.42	10.2	0.0	1.6	1	0	0	1	1	1	0	EF	hand
Phage_int_SAM_1	PF02899.17	gi|257051874|ref|YP_003129707.1|	-	2.3e-08	34.2	0.7	2.3e-08	34.2	0.7	2.4	3	0	0	3	3	3	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_integrase	PF00589.22	gi|257051874|ref|YP_003129707.1|	-	1.3e-06	28.3	0.0	1.3e-05	25.1	0.0	2.3	3	0	0	3	3	3	1	Phage	integrase	family
Phage_int_SAM_5	PF13102.6	gi|257051874|ref|YP_003129707.1|	-	0.025	14.9	0.0	0.047	14.0	0.0	1.4	1	0	0	1	1	1	0	Phage	integrase	SAM-like	domain
Phage_int_SAM_4	PF13495.6	gi|257051874|ref|YP_003129707.1|	-	0.082	13.4	0.0	0.26	11.8	0.0	1.9	1	1	0	1	1	1	0	Phage	integrase,	N-terminal	SAM-like	domain
HTH_45	PF14947.6	gi|257051875|ref|YP_003129708.1|	-	0.00082	19.3	0.2	0.0013	18.7	0.2	1.4	1	1	0	1	1	1	1	Winged	helix-turn-helix
MarR_2	PF12802.7	gi|257051875|ref|YP_003129708.1|	-	0.0011	18.8	0.2	0.0023	17.8	0.1	1.7	2	1	0	2	2	2	1	MarR	family
Mrr_N	PF14338.6	gi|257051875|ref|YP_003129708.1|	-	0.0056	16.8	0.0	0.0097	16.0	0.0	1.5	1	0	0	1	1	1	1	Mrr	N-terminal	domain
MotA_activ	PF09114.10	gi|257051875|ref|YP_003129708.1|	-	0.013	15.6	0.0	0.015	15.4	0.0	1.1	1	0	0	1	1	1	0	Transcription	factor	MotA,	activation	domain
DUF4364	PF14277.6	gi|257051875|ref|YP_003129708.1|	-	0.017	14.9	0.0	0.02	14.7	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
Rio2_N	PF09202.11	gi|257051875|ref|YP_003129708.1|	-	0.026	14.8	0.1	0.035	14.3	0.1	1.3	1	0	0	1	1	1	0	Rio2,	N-terminal
RepL	PF05732.11	gi|257051875|ref|YP_003129708.1|	-	0.048	13.1	0.0	0.055	12.9	0.0	1.1	1	0	0	1	1	1	0	Firmicute	plasmid	replication	protein	(RepL)
DUF4423	PF14394.6	gi|257051875|ref|YP_003129708.1|	-	0.073	12.8	0.0	0.1	12.3	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
Pilin_N	PF07790.11	gi|257051876|ref|YP_003129709.1|	-	9.1e-24	84.2	1.4	1.6e-23	83.4	1.4	1.4	1	0	0	1	1	1	1	Archaeal	Type	IV	pilin,	N-terminal
Pilin_N	PF07790.11	gi|257051877|ref|YP_003129710.1|	-	8.7e-23	81.1	1.0	1.4e-22	80.4	1.0	1.3	1	0	0	1	1	1	1	Archaeal	Type	IV	pilin,	N-terminal
Sigma70_r4_2	PF08281.12	gi|257051878|ref|YP_003129711.1|	-	1.5e-08	34.2	0.0	0.00036	20.1	0.0	2.3	2	0	0	2	2	2	2	Sigma-70,	region	4
Sigma70_r4	PF04545.16	gi|257051878|ref|YP_003129711.1|	-	2.6e-06	26.8	1.5	0.038	13.5	0.0	2.2	2	0	0	2	2	2	2	Sigma-70,	region	4
Sigma70_ECF	PF07638.11	gi|257051878|ref|YP_003129711.1|	-	1.7e-05	24.8	0.4	0.0034	17.3	0.0	2.0	1	1	1	2	2	2	2	ECF	sigma	factor
HTH_38	PF13936.6	gi|257051878|ref|YP_003129711.1|	-	0.00014	21.6	1.1	0.01	15.6	0.1	2.3	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_AsnC-type	PF13404.6	gi|257051878|ref|YP_003129711.1|	-	0.00045	20.0	2.5	0.0014	18.5	0.0	2.3	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HTH_23	PF13384.6	gi|257051878|ref|YP_003129711.1|	-	0.00053	19.7	5.1	0.001	18.8	0.8	2.2	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_24	PF13412.6	gi|257051878|ref|YP_003129711.1|	-	0.0016	18.0	0.4	0.0082	15.7	0.0	2.1	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.10	gi|257051878|ref|YP_003129711.1|	-	0.0044	16.8	0.0	0.32	10.8	0.0	2.4	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
NPA	PF16469.5	gi|257051878|ref|YP_003129711.1|	-	0.0073	16.9	0.0	0.016	15.8	0.0	1.6	1	0	0	1	1	1	1	Nematode	polyprotein	allergen	ABA-1
MarR_2	PF12802.7	gi|257051878|ref|YP_003129711.1|	-	0.022	14.6	0.2	7	6.6	0.1	2.5	2	1	0	2	2	2	0	MarR	family
KORA	PF16509.5	gi|257051878|ref|YP_003129711.1|	-	0.028	14.7	0.1	4.1	7.7	0.0	2.2	1	1	1	2	2	2	0	TrfB	plasmid	transcriptional	repressor
HTH_11	PF08279.12	gi|257051878|ref|YP_003129711.1|	-	0.066	13.2	1.2	0.58	10.1	0.1	2.2	2	0	0	2	2	2	0	HTH	domain
HTH_1	PF00126.27	gi|257051878|ref|YP_003129711.1|	-	0.095	12.7	0.9	15	5.6	0.1	2.5	2	0	0	2	2	2	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
GerE	PF00196.19	gi|257051878|ref|YP_003129711.1|	-	0.098	12.2	0.0	2.4	7.8	0.0	2.1	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	luxR	family
FaeA	PF04703.12	gi|257051878|ref|YP_003129711.1|	-	0.11	12.9	1.2	0.22	11.9	0.1	2.0	2	1	0	2	2	2	0	FaeA-like	protein
EccE	PF11203.8	gi|257051878|ref|YP_003129711.1|	-	0.21	11.9	5.8	0.054	13.8	1.4	2.0	1	1	1	2	2	2	0	Putative	type	VII	ESX	secretion	system	translocon,	EccE
HD	PF01966.22	gi|257051880|ref|YP_003129713.1|	-	4.9e-13	49.4	0.1	3.2e-12	46.7	0.1	2.4	1	1	0	1	1	1	1	HD	domain
HD_assoc	PF13286.6	gi|257051880|ref|YP_003129713.1|	-	3e-11	43.7	0.5	1.1e-10	41.8	0.5	2.0	1	1	0	1	1	1	1	Phosphohydrolase-associated	domain
Imm65	PF15582.6	gi|257051880|ref|YP_003129713.1|	-	0.059	12.2	0.0	0.58	8.9	0.0	2.1	2	0	0	2	2	2	0	Immunity	protein	65
HNF-1_N	PF04814.13	gi|257051881|ref|YP_003129714.1|	-	0.064	13.9	0.1	0.074	13.7	0.1	1.1	1	0	0	1	1	1	0	Hepatocyte	nuclear	factor	1	(HNF-1),	N	terminus
CGI-121	PF08617.10	gi|257051881|ref|YP_003129714.1|	-	0.11	12.6	0.0	0.13	12.4	0.0	1.0	1	0	0	1	1	1	0	Kinase	binding	protein	CGI-121
FlgD_ig	PF13860.6	gi|257051883|ref|YP_003129716.1|	-	9.6e-06	25.4	15.4	0.013	15.3	3.5	3.2	2	2	1	3	3	3	2	FlgD	Ig-like	domain
DUF3244	PF11589.8	gi|257051883|ref|YP_003129716.1|	-	0.00012	22.1	1.5	0.026	14.6	0.0	2.8	2	1	1	3	3	3	2	Domain	of	unknown	function	(DUF3244)
CopC	PF04234.12	gi|257051883|ref|YP_003129716.1|	-	0.02	15.9	3.6	0.67	11.0	0.1	2.8	1	1	1	2	2	2	0	CopC	domain
PA14	PF07691.12	gi|257051883|ref|YP_003129716.1|	-	0.025	14.4	0.2	0.037	13.8	0.2	1.4	1	0	0	1	1	1	0	PA14	domain
Propeptide_C25	PF08126.11	gi|257051885|ref|YP_003129718.1|	-	0.14	11.3	0.1	0.25	10.4	0.1	1.3	1	1	0	1	1	1	0	Propeptide_C25
SAVED	PF18145.1	gi|257051886|ref|YP_003129719.1|	-	0.092	12.5	0.0	0.15	11.8	0.0	1.3	1	0	0	1	1	1	0	SMODS-associated	and	fused	to	various	effectors	sensor	domain
YtxH	PF12732.7	gi|257051886|ref|YP_003129719.1|	-	0.18	12.4	0.3	0.37	11.3	0.3	1.5	1	0	0	1	1	1	0	YtxH-like	protein
TIR_2	PF13676.6	gi|257051889|ref|YP_003129722.1|	-	2.2e-17	63.7	0.0	3.8e-17	63.0	0.0	1.4	1	0	0	1	1	1	1	TIR	domain
TIR	PF01582.20	gi|257051889|ref|YP_003129722.1|	-	6.5e-09	35.8	0.1	1.6e-08	34.5	0.0	1.6	1	1	0	2	2	2	1	TIR	domain
tRNA_synt_1c_R1	PF04558.15	gi|257051889|ref|YP_003129722.1|	-	0.069	13.1	0.1	7.9	6.5	0.2	2.2	2	0	0	2	2	2	0	Glutaminyl-tRNA	synthetase,	non-specific	RNA	binding	region	part	1
DUF436	PF04260.12	gi|257051889|ref|YP_003129722.1|	-	0.19	11.3	0.1	0.37	10.4	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF436)
CREPT	PF16566.5	gi|257051890|ref|YP_003129723.1|	-	0.16	12.1	0.3	0.32	11.2	0.3	1.4	1	0	0	1	1	1	0	Cell-cycle	alteration	and	expression-elevated	protein	in	tumour
Sigma70_r4_2	PF08281.12	gi|257051891|ref|YP_003129724.1|	-	1.4e-07	31.0	0.0	1.7e-07	30.8	0.0	1.1	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_38	PF13936.6	gi|257051891|ref|YP_003129724.1|	-	0.063	13.0	0.0	0.081	12.7	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
SASP	PF00269.20	gi|257051891|ref|YP_003129724.1|	-	0.11	12.5	0.1	0.12	12.4	0.1	1.3	1	1	0	1	1	1	0	Small,	acid-soluble	spore	proteins,	alpha/beta	type
Ribosomal_S10	PF00338.22	gi|257051895|ref|YP_003129728.1|	-	4.4e-26	91.0	0.0	4.9e-26	90.8	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S10p/S20e
GTP_EFTU	PF00009.27	gi|257051896|ref|YP_003129729.1|	-	2.7e-58	196.7	0.1	3.7e-58	196.3	0.1	1.1	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
GTP_EFTU_D3	PF03143.17	gi|257051896|ref|YP_003129729.1|	-	1.9e-36	124.7	0.0	4.5e-36	123.5	0.0	1.7	1	0	0	1	1	1	1	Elongation	factor	Tu	C-terminal	domain
GTP_EFTU_D2	PF03144.25	gi|257051896|ref|YP_003129729.1|	-	2.3e-14	53.5	3.0	1.1e-13	51.3	1.1	2.5	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.23	gi|257051896|ref|YP_003129729.1|	-	2.6e-07	30.7	0.1	1.5e-06	28.3	0.1	2.1	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
Gtr1_RagA	PF04670.12	gi|257051896|ref|YP_003129729.1|	-	0.00035	20.0	0.1	0.094	12.0	0.0	2.2	2	0	0	2	2	2	2	Gtr1/RagA	G	protein	conserved	region
RsgA_GTPase	PF03193.16	gi|257051896|ref|YP_003129729.1|	-	0.00044	20.2	1.4	0.024	14.5	0.2	2.3	1	1	1	2	2	2	1	RsgA	GTPase
FeoB_N	PF02421.18	gi|257051896|ref|YP_003129729.1|	-	0.007	15.9	0.4	0.15	11.6	0.3	2.7	2	1	0	2	2	2	1	Ferrous	iron	transport	protein	B
SRPRB	PF09439.10	gi|257051896|ref|YP_003129729.1|	-	0.0072	15.8	0.0	0.27	10.6	0.0	2.5	1	1	0	1	1	1	1	Signal	recognition	particle	receptor	beta	subunit
Septin	PF00735.18	gi|257051896|ref|YP_003129729.1|	-	0.012	14.9	0.1	0.031	13.5	0.1	1.6	1	1	0	1	1	1	0	Septin
Dynamin_N	PF00350.23	gi|257051896|ref|YP_003129729.1|	-	0.016	15.3	0.1	4.9	7.2	0.0	2.4	1	1	1	2	2	2	0	Dynamin	family
GTP_EFTU_D4	PF14578.6	gi|257051896|ref|YP_003129729.1|	-	0.08	12.9	0.3	0.21	11.5	0.3	1.7	1	0	0	1	1	1	0	Elongation	factor	Tu	domain	4
ATP_bind_1	PF03029.17	gi|257051896|ref|YP_003129729.1|	-	0.081	12.7	1.6	0.37	10.5	0.5	2.2	2	1	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
Homoserine_dh	PF00742.19	gi|257051897|ref|YP_003129730.1|	-	5.6e-47	159.9	0.0	9.7e-47	159.1	0.0	1.3	1	0	0	1	1	1	1	Homoserine	dehydrogenase
ELFV_dehydrog	PF00208.21	gi|257051897|ref|YP_003129730.1|	-	5.3e-05	23.0	0.1	8.5e-05	22.4	0.1	1.3	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
NAD_binding_3	PF03447.16	gi|257051897|ref|YP_003129730.1|	-	0.0001	22.9	0.2	0.00024	21.7	0.2	1.7	1	0	0	1	1	1	1	Homoserine	dehydrogenase,	NAD	binding	domain
3HCDH_N	PF02737.18	gi|257051897|ref|YP_003129730.1|	-	0.014	15.3	0.1	0.021	14.7	0.1	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|257051897|ref|YP_003129730.1|	-	0.015	14.6	0.0	0.024	14.0	0.0	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Pyr_redox	PF00070.27	gi|257051897|ref|YP_003129730.1|	-	0.098	13.2	0.1	0.21	12.1	0.1	1.6	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
TrkA_N	PF02254.18	gi|257051897|ref|YP_003129730.1|	-	0.1	12.9	0.0	0.5	10.6	0.0	2.1	2	0	0	2	2	2	0	TrkA-N	domain
ACT	PF01842.25	gi|257051898|ref|YP_003129731.1|	-	0.00011	21.9	0.2	0.0083	15.9	0.0	2.9	1	1	1	2	2	2	2	ACT	domain
Chorismate_bind	PF00425.18	gi|257051899|ref|YP_003129732.1|	-	9.4e-76	254.8	0.0	1.2e-75	254.5	0.0	1.1	1	0	0	1	1	1	1	chorismate	binding	enzyme
TPP_enzyme_N	PF02776.18	gi|257051900|ref|YP_003129733.1|	-	2.9e-37	127.9	0.9	5.5e-37	127.0	0.9	1.5	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_C	PF02775.21	gi|257051900|ref|YP_003129733.1|	-	1.5e-06	28.1	0.0	2.7e-06	27.2	0.0	1.4	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
TPP_enzyme_M_2	PF16582.5	gi|257051900|ref|YP_003129733.1|	-	4.1e-05	23.4	0.0	7.1e-05	22.6	0.0	1.3	1	1	0	1	1	1	1	Middle	domain	of	thiamine	pyrophosphate
TPP_enzyme_M	PF00205.22	gi|257051900|ref|YP_003129733.1|	-	0.0012	18.5	0.0	0.0041	16.9	0.0	1.9	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	central	domain
DnaJ	PF00226.31	gi|257051901|ref|YP_003129734.1|	-	6.7e-17	61.4	0.3	9.2e-17	60.9	0.3	1.2	1	0	0	1	1	1	1	DnaJ	domain
RED_N	PF07808.13	gi|257051901|ref|YP_003129734.1|	-	0.094	12.3	0.8	0.13	11.8	0.8	1.2	1	0	0	1	1	1	0	RED-like	protein	N-terminal	region
TrmB	PF01978.19	gi|257051902|ref|YP_003129735.1|	-	3.8e-16	58.7	0.0	5.2e-16	58.3	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.22	gi|257051902|ref|YP_003129735.1|	-	1.4e-06	28.1	0.1	3.3e-06	26.9	0.0	1.7	2	0	0	2	2	1	1	MarR	family
HTH_IclR	PF09339.10	gi|257051902|ref|YP_003129735.1|	-	2.2e-06	27.4	0.0	4.4e-06	26.4	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|257051902|ref|YP_003129735.1|	-	7.2e-05	22.6	0.0	0.00011	22.0	0.0	1.3	1	0	0	1	1	1	1	MarR	family
Penicillinase_R	PF03965.16	gi|257051902|ref|YP_003129735.1|	-	0.00015	22.1	0.0	0.00019	21.8	0.0	1.1	1	0	0	1	1	1	1	Penicillinase	repressor
HTH_11	PF08279.12	gi|257051902|ref|YP_003129735.1|	-	0.00057	19.8	0.0	0.00096	19.0	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
HTH_24	PF13412.6	gi|257051902|ref|YP_003129735.1|	-	0.001	18.6	0.0	0.0014	18.1	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_27	PF13463.6	gi|257051902|ref|YP_003129735.1|	-	0.0013	19.1	0.1	0.0036	17.8	0.0	1.8	1	1	1	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_23	PF13384.6	gi|257051902|ref|YP_003129735.1|	-	0.0015	18.3	0.0	0.0042	16.8	0.0	1.8	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_20	PF12840.7	gi|257051902|ref|YP_003129735.1|	-	0.0016	18.4	0.0	0.0033	17.5	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
RuvB_C	PF05491.13	gi|257051902|ref|YP_003129735.1|	-	0.0032	17.3	0.0	0.0053	16.6	0.0	1.3	1	0	0	1	1	1	1	RuvB	C-terminal	winged	helix	domain
HTH_38	PF13936.6	gi|257051902|ref|YP_003129735.1|	-	0.012	15.4	0.0	0.028	14.2	0.0	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain
UMPH-1	PF05822.12	gi|257051902|ref|YP_003129735.1|	-	0.015	14.8	0.0	0.023	14.2	0.0	1.4	1	1	0	1	1	1	0	Pyrimidine	5'-nucleotidase	(UMPH-1)
PadR	PF03551.14	gi|257051902|ref|YP_003129735.1|	-	0.022	14.7	0.1	0.054	13.5	0.1	1.6	1	1	1	2	2	2	0	Transcriptional	regulator	PadR-like	family
Peptidase_S7	PF00949.21	gi|257051902|ref|YP_003129735.1|	-	0.022	14.6	0.0	0.06	13.2	0.0	1.6	1	1	1	2	2	2	0	Peptidase	S7,	Flavivirus	NS3	serine	protease
Rrf2	PF02082.20	gi|257051902|ref|YP_003129735.1|	-	0.027	14.8	0.0	0.047	14.0	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	regulator
Sigma70_r4_2	PF08281.12	gi|257051902|ref|YP_003129735.1|	-	0.028	14.1	0.0	0.13	12.0	0.0	2.1	2	1	0	2	2	2	0	Sigma-70,	region	4
DUF4777	PF16007.5	gi|257051902|ref|YP_003129735.1|	-	0.031	14.5	0.1	0.16	12.3	0.1	2.2	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4777)
HTH_Crp_2	PF13545.6	gi|257051902|ref|YP_003129735.1|	-	0.032	14.2	0.1	0.065	13.2	0.1	1.5	1	1	0	1	1	1	0	Crp-like	helix-turn-helix	domain
Dimerisation	PF08100.11	gi|257051902|ref|YP_003129735.1|	-	0.039	14.0	0.0	0.079	13.0	0.0	1.5	1	0	0	1	1	1	0	Dimerisation	domain
HTH_29	PF13551.6	gi|257051902|ref|YP_003129735.1|	-	0.057	13.5	0.0	0.1	12.6	0.0	1.7	1	1	1	2	2	2	0	Winged	helix-turn	helix
Sigma54_DBD	PF04552.13	gi|257051902|ref|YP_003129735.1|	-	0.1	12.3	0.0	0.13	11.9	0.0	1.2	1	0	0	1	1	1	0	Sigma-54,	DNA	binding	domain
HTH_28	PF13518.6	gi|257051902|ref|YP_003129735.1|	-	0.11	12.6	0.1	0.27	11.4	0.0	1.6	2	0	0	2	2	1	0	Helix-turn-helix	domain
HTH_40	PF14493.6	gi|257051902|ref|YP_003129735.1|	-	0.13	12.7	0.0	0.21	12.1	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
Thioredoxin	PF00085.20	gi|257051903|ref|YP_003129736.1|	-	6.9e-27	93.4	0.0	9.5e-27	93.0	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.6	gi|257051903|ref|YP_003129736.1|	-	4.2e-09	36.8	0.1	1.9e-07	31.5	0.1	2.3	1	1	0	1	1	1	1	Thioredoxin-like	domain
DSBA	PF01323.20	gi|257051903|ref|YP_003129736.1|	-	1e-06	28.7	0.0	1.7e-06	27.9	0.0	1.5	1	0	0	1	1	1	1	DSBA-like	thioredoxin	domain
Thioredoxin_9	PF14595.6	gi|257051903|ref|YP_003129736.1|	-	8.1e-05	22.4	0.2	0.00018	21.3	0.2	1.5	1	1	0	1	1	1	1	Thioredoxin
Thioredoxin_8	PF13905.6	gi|257051903|ref|YP_003129736.1|	-	0.00011	22.4	0.1	0.27	11.6	0.0	2.5	2	1	1	3	3	3	2	Thioredoxin-like
Thioredoxin_5	PF13743.6	gi|257051903|ref|YP_003129736.1|	-	0.00024	20.8	0.0	0.00039	20.2	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin
HyaE	PF07449.11	gi|257051903|ref|YP_003129736.1|	-	0.00026	20.9	0.0	0.00048	20.1	0.0	1.4	1	0	0	1	1	1	1	Hydrogenase-1	expression	protein	HyaE
TraF	PF13728.6	gi|257051903|ref|YP_003129736.1|	-	0.00049	20.0	0.5	0.00095	19.1	0.0	1.6	1	1	1	2	2	2	1	F	plasmid	transfer	operon	protein
Thioredoxin_7	PF13899.6	gi|257051903|ref|YP_003129736.1|	-	0.00053	20.1	0.1	0.0011	19.1	0.1	1.6	1	0	0	1	1	1	1	Thioredoxin-like
Thioredoxin_3	PF13192.6	gi|257051903|ref|YP_003129736.1|	-	0.00072	19.5	0.0	0.0013	18.7	0.0	1.5	1	0	0	1	1	1	1	Thioredoxin	domain
Phosducin	PF02114.16	gi|257051903|ref|YP_003129736.1|	-	0.0008	18.4	0.0	0.001	18.1	0.0	1.0	1	0	0	1	1	1	1	Phosducin
Glutaredoxin	PF00462.24	gi|257051903|ref|YP_003129736.1|	-	0.0028	17.8	0.0	0.005	17.0	0.0	1.4	1	0	0	1	1	1	1	Glutaredoxin
DUF836	PF05768.14	gi|257051903|ref|YP_003129736.1|	-	0.0043	17.4	0.0	0.0071	16.7	0.0	1.5	1	0	0	1	1	1	1	Glutaredoxin-like	domain	(DUF836)
OST3_OST6	PF04756.13	gi|257051903|ref|YP_003129736.1|	-	0.054	12.9	0.0	0.057	12.8	0.0	1.2	1	0	0	1	1	1	0	OST3	/	OST6	family,	transporter	family
PhnA_Zn_Ribbon	PF08274.12	gi|257051904|ref|YP_003129737.1|	-	0.00024	21.0	3.8	0.011	15.7	0.4	2.3	2	0	0	2	2	2	2	PhnA	Zinc-Ribbon
HypA	PF01155.19	gi|257051904|ref|YP_003129737.1|	-	0.0029	17.6	0.3	0.0032	17.5	0.3	1.1	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
TackOD1	PF18551.1	gi|257051904|ref|YP_003129737.1|	-	0.0075	16.0	0.2	0.0085	15.8	0.2	1.1	1	0	0	1	1	1	1	Thaumarchaeal	output	domain	1
zinc_ribbon_10	PF10058.9	gi|257051904|ref|YP_003129737.1|	-	0.016	14.9	0.0	0.021	14.5	0.0	1.2	1	0	0	1	1	1	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
DUF4379	PF14311.6	gi|257051904|ref|YP_003129737.1|	-	0.021	15.2	0.6	0.031	14.6	0.6	1.3	1	0	0	1	1	1	0	Probable	Zinc-ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|257051904|ref|YP_003129737.1|	-	0.026	14.5	2.1	0.11	12.5	2.1	1.8	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
zf_UBZ	PF18439.1	gi|257051904|ref|YP_003129737.1|	-	0.044	13.4	1.7	5.2	6.7	0.2	2.3	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
zinc_ribbon_4	PF13717.6	gi|257051904|ref|YP_003129737.1|	-	0.051	13.5	2.0	0.3	11.0	2.4	1.8	1	1	1	2	2	2	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|257051904|ref|YP_003129737.1|	-	0.087	12.4	2.1	3.1	7.4	0.2	2.2	2	0	0	2	2	2	0	TFIIB	zinc-binding
zinc_ribbon_9	PF14369.6	gi|257051904|ref|YP_003129737.1|	-	0.089	13.1	3.7	0.35	11.1	3.8	1.9	1	1	1	2	2	2	0	zinc-ribbon
TFIIS_C	PF01096.18	gi|257051904|ref|YP_003129737.1|	-	0.098	12.5	1.9	2.3	8.2	0.4	2.1	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
DUF1610	PF07754.11	gi|257051904|ref|YP_003129737.1|	-	0.11	12.5	4.1	5.4	7.1	0.2	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
zf-H2C2_2	PF13465.6	gi|257051904|ref|YP_003129737.1|	-	0.14	12.7	4.0	4	8.0	0.5	2.2	2	0	0	2	2	2	0	Zinc-finger	double	domain
zf-C2H2_4	PF13894.6	gi|257051904|ref|YP_003129737.1|	-	0.14	13.1	0.6	12	7.0	0.1	2.3	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zinc-ribbons_6	PF07191.12	gi|257051904|ref|YP_003129737.1|	-	0.15	12.1	2.2	0.4	10.7	2.3	1.6	1	1	1	2	2	2	0	zinc-ribbons
DUF3039	PF11238.8	gi|257051904|ref|YP_003129737.1|	-	0.39	10.5	2.5	3.2	7.6	0.2	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3039)
zf_C2H2_10	PF18414.1	gi|257051904|ref|YP_003129737.1|	-	0.66	9.6	6.4	1.1	8.8	0.2	2.9	3	0	0	3	3	3	0	C2H2	type	zinc-finger
eIF-5_eIF-2B	PF01873.17	gi|257051905|ref|YP_003129738.1|	-	4.5e-36	123.3	0.0	5.5e-36	123.0	0.0	1.0	1	0	0	1	1	1	1	Domain	found	in	IF2B/IF5
zinc_ribbon_12	PF11331.8	gi|257051905|ref|YP_003129738.1|	-	0.091	12.6	0.8	0.2	11.5	0.8	1.5	1	1	0	1	1	1	0	Probable	zinc-ribbon	domain
DNA_RNApol_7kD	PF03604.13	gi|257051905|ref|YP_003129738.1|	-	0.15	11.7	4.1	2	8.1	4.6	2.1	1	1	1	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
Rubredoxin_2	PF18073.1	gi|257051905|ref|YP_003129738.1|	-	0.62	9.8	3.1	5.3	6.9	0.6	2.2	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
zinc_ribbon_4	PF13717.6	gi|257051905|ref|YP_003129738.1|	-	1	9.3	2.8	5.7	7.0	1.9	2.5	2	1	0	2	2	2	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|257051905|ref|YP_003129738.1|	-	1.6	8.3	4.6	3.6	7.2	0.4	2.4	1	1	1	2	2	2	0	TFIIB	zinc-binding
UPF0058	PF01893.16	gi|257051906|ref|YP_003129739.1|	-	5.6e-20	71.4	0.2	6.3e-20	71.3	0.2	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0058
DUF555	PF04475.12	gi|257051907|ref|YP_003129740.1|	-	3.6e-40	136.4	0.3	3.6e-40	136.4	0.3	1.4	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF555)
Zn_Tnp_IS1595	PF12760.7	gi|257051907|ref|YP_003129740.1|	-	0.039	13.9	0.0	0.085	12.8	0.0	1.5	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|257051907|ref|YP_003129740.1|	-	0.057	13.2	0.4	0.11	12.3	0.4	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|257051907|ref|YP_003129740.1|	-	0.09	12.2	0.2	0.17	11.3	0.2	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
Tom22	PF04281.13	gi|257051907|ref|YP_003129740.1|	-	8.2	6.2	12.3	15	5.3	12.3	1.5	1	0	0	1	1	1	0	Mitochondrial	import	receptor	subunit	Tom22
CDC45	PF02724.14	gi|257051907|ref|YP_003129740.1|	-	8.5	4.5	9.5	9.9	4.3	9.5	1.0	1	0	0	1	1	1	0	CDC45-like	protein
HhH-GPD	PF00730.25	gi|257051908|ref|YP_003129741.1|	-	5.7e-14	52.5	0.0	8.5e-14	51.9	0.0	1.2	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
OGG_N	PF07934.12	gi|257051908|ref|YP_003129741.1|	-	1.5e-07	31.5	0.0	1.7e-06	28.1	0.0	2.1	1	1	0	1	1	1	1	8-oxoguanine	DNA	glycosylase,	N-terminal	domain
DUF2525	PF10733.9	gi|257051908|ref|YP_003129741.1|	-	0.13	12.6	0.0	0.32	11.3	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2525)
Acylphosphatase	PF00708.18	gi|257051909|ref|YP_003129742.1|	-	2.7e-27	95.0	0.1	3.3e-27	94.7	0.1	1.1	1	0	0	1	1	1	1	Acylphosphatase
HEM4	PF02602.15	gi|257051909|ref|YP_003129742.1|	-	0.082	12.2	0.1	3.8	6.8	0.1	2.0	1	1	1	2	2	2	0	Uroporphyrinogen-III	synthase	HemD
Carb_kinase	PF01256.17	gi|257051911|ref|YP_003129744.1|	-	1.2e-48	165.8	0.8	1.6e-48	165.4	0.8	1.2	1	0	0	1	1	1	1	Carbohydrate	kinase
YjeF_N	PF03853.15	gi|257051911|ref|YP_003129744.1|	-	2.4e-41	141.5	0.7	2.4e-41	141.5	0.7	1.7	2	0	0	2	2	2	1	YjeF-related	protein	N-terminus
HK	PF02110.15	gi|257051911|ref|YP_003129744.1|	-	2.2e-06	27.3	0.0	3.9e-06	26.5	0.0	1.3	1	0	0	1	1	1	1	Hydroxyethylthiazole	kinase	family
4HBT	PF03061.22	gi|257051912|ref|YP_003129745.1|	-	2.2e-17	63.2	0.0	2.9e-17	62.8	0.0	1.2	1	0	0	1	1	1	1	Thioesterase	superfamily
GTP-bdg_N	PF13167.6	gi|257051913|ref|YP_003129746.1|	-	8.8e-21	74.4	0.0	2e-20	73.2	0.0	1.7	1	0	0	1	1	1	1	GTP-binding	GTPase	N-terminal
MMR_HSR1	PF01926.23	gi|257051913|ref|YP_003129746.1|	-	6.3e-18	64.9	0.1	3.4e-17	62.5	0.0	2.1	2	0	0	2	2	2	1	50S	ribosome-binding	GTPase
GTP-bdg_M	PF16360.5	gi|257051913|ref|YP_003129746.1|	-	1.4e-17	64.0	8.3	3.5e-17	62.7	8.3	1.7	1	0	0	1	1	1	1	GTP-binding	GTPase	Middle	Region
GTP_EFTU	PF00009.27	gi|257051913|ref|YP_003129746.1|	-	1.4e-11	44.3	0.2	2.9e-10	40.0	0.1	2.7	2	1	0	2	2	2	1	Elongation	factor	Tu	GTP	binding	domain
RsgA_GTPase	PF03193.16	gi|257051913|ref|YP_003129746.1|	-	3.5e-09	36.8	0.0	0.00043	20.2	0.1	2.7	3	0	0	3	3	3	2	RsgA	GTPase
cobW	PF02492.19	gi|257051913|ref|YP_003129746.1|	-	1.4e-06	28.0	0.1	0.00028	20.5	0.0	2.3	1	1	1	2	2	2	1	CobW/HypB/UreG,	nucleotide-binding	domain
MMR_HSR1_Xtn	PF16897.5	gi|257051913|ref|YP_003129746.1|	-	2e-06	27.7	0.0	6.6e-06	26.1	0.0	1.8	2	0	0	2	2	2	1	C-terminal	region	of	MMR_HSR1	domain
FeoB_N	PF02421.18	gi|257051913|ref|YP_003129746.1|	-	4e-05	23.2	0.1	0.043	13.3	0.0	2.7	3	0	0	3	3	3	2	Ferrous	iron	transport	protein	B
Arf	PF00025.21	gi|257051913|ref|YP_003129746.1|	-	0.00077	19.0	0.6	0.77	9.2	0.1	2.9	2	1	1	3	3	3	2	ADP-ribosylation	factor	family
MnmE_helical	PF12631.7	gi|257051913|ref|YP_003129746.1|	-	0.0014	18.8	0.1	0.0022	18.2	0.1	1.3	1	0	0	1	1	1	1	MnmE	helical	domain
AAA_18	PF13238.6	gi|257051913|ref|YP_003129746.1|	-	0.0014	19.1	0.6	0.0062	17.1	0.0	2.4	2	1	1	3	3	3	1	AAA	domain
DUF2046	PF09755.9	gi|257051913|ref|YP_003129746.1|	-	0.0085	15.4	0.7	0.041	13.1	0.0	2.0	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	H4	(DUF2046)
AAA_14	PF13173.6	gi|257051913|ref|YP_003129746.1|	-	0.014	15.4	0.0	0.033	14.2	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
ABC_tran	PF00005.27	gi|257051913|ref|YP_003129746.1|	-	0.025	15.1	0.0	0.099	13.2	0.0	2.1	1	1	1	2	2	2	0	ABC	transporter
MeaB	PF03308.16	gi|257051913|ref|YP_003129746.1|	-	0.034	13.1	0.4	43	3.0	0.0	3.5	3	1	1	4	4	4	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
DUF1949	PF09186.11	gi|257051913|ref|YP_003129746.1|	-	0.04	13.8	1.3	0.79	9.6	0.1	3.4	3	1	1	4	4	4	0	Domain	of	unknown	function	(DUF1949)
PduV-EutP	PF10662.9	gi|257051913|ref|YP_003129746.1|	-	0.042	13.6	0.0	1.2	8.9	0.0	2.2	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
Roc	PF08477.13	gi|257051913|ref|YP_003129746.1|	-	0.054	13.7	0.0	11	6.3	0.0	2.4	2	0	0	2	2	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
AAA_23	PF13476.6	gi|257051913|ref|YP_003129746.1|	-	0.087	13.3	0.2	21	5.5	0.0	2.5	3	0	0	3	3	3	0	AAA	domain
AAA_16	PF13191.6	gi|257051913|ref|YP_003129746.1|	-	0.11	12.9	6.0	0.069	13.5	0.9	2.5	1	1	1	2	2	2	0	AAA	ATPase	domain
AAA_22	PF13401.6	gi|257051913|ref|YP_003129746.1|	-	0.12	12.7	0.0	0.48	10.7	0.0	2.2	2	1	0	2	2	1	0	AAA	domain
AAA_33	PF13671.6	gi|257051913|ref|YP_003129746.1|	-	0.32	11.2	1.7	0.59	10.3	0.1	2.5	3	1	0	3	3	2	0	AAA	domain
PIN	PF01850.21	gi|257051914|ref|YP_003129747.1|	-	6.5e-09	36.3	0.1	7.5e-09	36.1	0.1	1.0	1	0	0	1	1	1	1	PIN	domain
DUF4872	PF16169.5	gi|257051914|ref|YP_003129747.1|	-	0.11	12.3	0.0	0.14	11.9	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4872)
ThiW	PF09512.10	gi|257051914|ref|YP_003129747.1|	-	0.16	12.0	0.0	0.22	11.7	0.0	1.1	1	0	0	1	1	1	0	Thiamine-precursor	transporter	protein	(ThiW)
HTH_11	PF08279.12	gi|257051915|ref|YP_003129748.1|	-	8e-06	25.7	0.0	1.1e-05	25.2	0.0	1.2	1	0	0	1	1	1	1	HTH	domain
HTH_20	PF12840.7	gi|257051915|ref|YP_003129748.1|	-	1.3e-05	25.2	0.0	3.8e-05	23.7	0.0	1.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|257051915|ref|YP_003129748.1|	-	0.0037	17.1	0.0	0.0062	16.4	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_23	PF13384.6	gi|257051915|ref|YP_003129748.1|	-	0.0042	16.8	0.0	0.006	16.4	0.0	1.2	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_Mga	PF08280.11	gi|257051915|ref|YP_003129748.1|	-	0.012	15.7	0.0	0.015	15.3	0.0	1.2	1	0	0	1	1	1	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
MarR_2	PF12802.7	gi|257051915|ref|YP_003129748.1|	-	0.017	15.0	0.1	0.024	14.5	0.1	1.2	1	0	0	1	1	1	0	MarR	family
HTH_Crp_2	PF13545.6	gi|257051915|ref|YP_003129748.1|	-	0.019	14.9	0.0	0.024	14.6	0.0	1.1	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
Rrf2	PF02082.20	gi|257051915|ref|YP_003129748.1|	-	0.039	14.3	0.0	0.055	13.8	0.0	1.2	1	0	0	1	1	1	0	Transcriptional	regulator
RPA_C	PF08784.11	gi|257051915|ref|YP_003129748.1|	-	0.05	14.3	0.0	0.066	13.9	0.0	1.1	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
Fe_dep_repress	PF01325.19	gi|257051915|ref|YP_003129748.1|	-	0.061	13.5	0.0	0.09	13.0	0.0	1.2	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_36	PF13730.6	gi|257051915|ref|YP_003129748.1|	-	0.14	12.2	0.0	0.2	11.7	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
GerE	PF00196.19	gi|257051915|ref|YP_003129748.1|	-	0.15	11.6	0.0	0.31	10.6	0.0	1.5	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	luxR	family
ThuA	PF06283.11	gi|257051916|ref|YP_003129749.1|	-	3.3e-30	105.9	0.0	8.5e-30	104.5	0.0	1.6	1	1	0	1	1	1	1	Trehalose	utilisation
DUF2194	PF09960.9	gi|257051916|ref|YP_003129749.1|	-	0.075	11.4	0.0	0.18	10.1	0.0	1.5	1	1	0	1	1	1	0	Uncharacterised	protein	conserved	in	bacteria	(DUF2194)
Rib_5-P_isom_A	PF06026.14	gi|257051917|ref|YP_003129750.1|	-	3.1e-55	186.4	0.3	3.8e-55	186.1	0.3	1.1	1	0	0	1	1	1	1	Ribose	5-phosphate	isomerase	A	(phosphoriboisomerase	A)
DeoRC	PF00455.22	gi|257051917|ref|YP_003129750.1|	-	2.5e-05	24.3	0.1	4.9e-05	23.3	0.1	1.5	1	0	0	1	1	1	1	DeoR	C	terminal	sensor	domain
Ribul_P_3_epim	PF00834.19	gi|257051918|ref|YP_003129751.1|	-	1.2e-65	220.7	0.0	1.3e-65	220.5	0.0	1.0	1	0	0	1	1	1	1	Ribulose-phosphate	3	epimerase	family
His_biosynth	PF00977.21	gi|257051918|ref|YP_003129751.1|	-	5.9e-05	22.6	0.1	0.0059	16.1	0.0	2.5	2	1	1	3	3	3	2	Histidine	biosynthesis	protein
PEP_mutase	PF13714.6	gi|257051918|ref|YP_003129751.1|	-	0.051	13.0	0.1	4.3	6.7	0.0	2.4	1	1	1	2	2	2	0	Phosphoenolpyruvate	phosphomutase
TMP-TENI	PF02581.17	gi|257051918|ref|YP_003129751.1|	-	0.084	12.2	0.0	0.11	11.9	0.0	1.2	1	0	0	1	1	1	0	Thiamine	monophosphate	synthase
Pribosyltran	PF00156.27	gi|257051919|ref|YP_003129752.1|	-	8.9e-10	38.3	0.2	2.2e-09	37.0	0.1	1.7	2	0	0	2	2	2	1	Phosphoribosyl	transferase	domain
Pribosyltran_N	PF13793.6	gi|257051919|ref|YP_003129752.1|	-	1.2e-08	34.9	0.0	1e-07	31.9	0.0	2.1	2	0	0	2	2	2	1	N-terminal	domain	of	ribose	phosphate	pyrophosphokinase
UPRTase	PF14681.6	gi|257051919|ref|YP_003129752.1|	-	1.6e-06	27.7	0.0	2.5e-06	27.1	0.0	1.3	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
PRTase_2	PF15609.6	gi|257051919|ref|YP_003129752.1|	-	7.6e-05	22.3	0.3	0.0014	18.2	0.4	2.3	2	1	1	3	3	3	1	Phosphoribosyl	transferase
Pribosyl_synth	PF14572.6	gi|257051919|ref|YP_003129752.1|	-	0.00034	20.7	0.3	0.00056	20.0	0.3	1.2	1	0	0	1	1	1	1	Phosphoribosyl	synthetase-associated	domain
Pyr_redox_2	PF07992.14	gi|257051920|ref|YP_003129753.1|	-	2.7e-28	99.1	0.3	3.3e-28	98.8	0.3	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|257051920|ref|YP_003129753.1|	-	9.1e-12	44.8	0.1	4.3e-08	32.8	0.0	2.4	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.24	gi|257051920|ref|YP_003129753.1|	-	7.4e-06	25.8	4.2	0.037	13.6	3.5	2.4	2	1	0	2	2	2	2	FAD	dependent	oxidoreductase
Pyr_redox	PF00070.27	gi|257051920|ref|YP_003129753.1|	-	9.8e-06	26.1	1.4	0.11	13.0	0.6	2.5	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.7	gi|257051920|ref|YP_003129753.1|	-	2.5e-05	23.8	4.4	3.7e-05	23.3	4.4	1.2	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
GIDA	PF01134.22	gi|257051920|ref|YP_003129753.1|	-	3.2e-05	23.2	0.7	7.2e-05	22.0	0.6	1.6	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
FAD_binding_2	PF00890.24	gi|257051920|ref|YP_003129753.1|	-	3.5e-05	23.1	7.8	0.00015	21.0	2.5	2.8	2	1	1	3	3	3	1	FAD	binding	domain
HI0933_like	PF03486.14	gi|257051920|ref|YP_003129753.1|	-	3.5e-05	22.7	0.3	0.007	15.1	1.3	2.1	2	0	0	2	2	2	2	HI0933-like	protein
AlaDh_PNT_C	PF01262.21	gi|257051920|ref|YP_003129753.1|	-	0.00026	20.4	0.1	0.00043	19.7	0.1	1.3	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
FAD_binding_3	PF01494.19	gi|257051920|ref|YP_003129753.1|	-	0.0029	16.9	0.7	0.0042	16.4	0.7	1.2	1	0	0	1	1	1	1	FAD	binding	domain
Thi4	PF01946.17	gi|257051920|ref|YP_003129753.1|	-	0.0059	15.9	0.1	0.01	15.1	0.1	1.4	1	0	0	1	1	1	1	Thi4	family
NAD_binding_9	PF13454.6	gi|257051920|ref|YP_003129753.1|	-	0.0086	16.1	0.3	0.48	10.4	0.0	2.8	3	0	0	3	3	3	1	FAD-NAD(P)-binding
NAD_binding_8	PF13450.6	gi|257051920|ref|YP_003129753.1|	-	0.009	16.2	0.3	0.02	15.1	0.3	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Trp_halogenase	PF04820.14	gi|257051920|ref|YP_003129753.1|	-	0.094	11.5	1.0	0.23	10.3	0.4	1.9	2	0	0	2	2	2	0	Tryptophan	halogenase
Lycopene_cycl	PF05834.12	gi|257051920|ref|YP_003129753.1|	-	0.29	10.1	0.6	0.44	9.5	0.6	1.2	1	0	0	1	1	1	0	Lycopene	cyclase	protein
AhpC-TSA	PF00578.21	gi|257051921|ref|YP_003129754.1|	-	8.9e-15	54.7	0.0	1.2e-14	54.2	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|257051921|ref|YP_003129754.1|	-	1.5e-07	31.3	0.0	1.8e-07	30.9	0.0	1.1	1	0	0	1	1	1	1	Redoxin
Thioredoxin_8	PF13905.6	gi|257051921|ref|YP_003129754.1|	-	0.038	14.3	0.0	0.059	13.7	0.0	1.3	1	0	0	1	1	1	0	Thioredoxin-like
HydF_tetramer	PF18133.1	gi|257051924|ref|YP_003129757.1|	-	0.061	13.1	0.0	0.094	12.5	0.0	1.3	1	0	0	1	1	1	0	Hydrogen	maturase	F	tetramerization	domain
Pyr_redox_2	PF07992.14	gi|257051925|ref|YP_003129758.1|	-	1.1e-52	179.1	3.2	1.5e-52	178.7	3.2	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|257051925|ref|YP_003129758.1|	-	2.7e-24	85.6	0.2	5.2e-24	84.6	0.2	1.5	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox	PF00070.27	gi|257051925|ref|YP_003129758.1|	-	4.8e-15	55.9	5.8	3e-14	53.3	0.2	2.5	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|257051925|ref|YP_003129758.1|	-	1.3e-09	37.7	0.7	4e-07	29.6	0.0	2.1	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|257051925|ref|YP_003129758.1|	-	1.4e-05	24.3	2.3	1.4e-05	24.3	2.3	2.1	2	1	0	2	2	2	1	Glucose	inhibited	division	protein	A
FAD_oxidored	PF12831.7	gi|257051925|ref|YP_003129758.1|	-	0.00022	20.7	0.9	0.0004	19.9	0.9	1.4	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Multi_ubiq	PF14452.6	gi|257051925|ref|YP_003129758.1|	-	0.0005	20.3	0.0	0.013	15.7	0.0	2.6	2	0	0	2	2	2	1	Multiubiquitin
FAD_binding_2	PF00890.24	gi|257051925|ref|YP_003129758.1|	-	0.0011	18.1	0.9	0.0011	18.1	0.9	2.0	4	0	0	4	4	4	1	FAD	binding	domain
3HCDH_N	PF02737.18	gi|257051925|ref|YP_003129758.1|	-	0.0049	16.8	0.6	2.7	7.9	0.0	2.3	2	0	0	2	2	2	2	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
K_oxygenase	PF13434.6	gi|257051925|ref|YP_003129758.1|	-	0.018	14.2	0.1	0.041	13.0	0.0	1.6	2	0	0	2	2	2	0	L-lysine	6-monooxygenase	(NADPH-requiring)
NAD_binding_8	PF13450.6	gi|257051925|ref|YP_003129758.1|	-	0.048	13.9	2.1	3.3	8.0	0.6	2.6	2	0	0	2	2	2	0	NAD(P)-binding	Rossmann-like	domain
MDMPI_C	PF07398.11	gi|257051925|ref|YP_003129758.1|	-	0.05	14.5	1.0	0.15	12.9	1.0	1.8	1	0	0	1	1	1	0	MDMPI	C-terminal	domain
HI0933_like	PF03486.14	gi|257051925|ref|YP_003129758.1|	-	0.6	8.8	1.8	0.56	8.8	0.2	1.8	3	0	0	3	3	3	0	HI0933-like	protein
HxlR	PF01638.17	gi|257051926|ref|YP_003129759.1|	-	1.6e-24	85.6	0.0	2e-24	85.3	0.0	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
PadR	PF03551.14	gi|257051926|ref|YP_003129759.1|	-	0.012	15.6	0.0	0.023	14.6	0.0	1.5	2	0	0	2	2	2	0	Transcriptional	regulator	PadR-like	family
HTH_5	PF01022.20	gi|257051926|ref|YP_003129759.1|	-	0.035	14.0	0.2	0.058	13.3	0.2	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
DUF2304	PF10066.9	gi|257051928|ref|YP_003129761.1|	-	0.00064	19.9	0.8	0.00064	19.9	0.8	1.6	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2304)
TauE	PF01925.19	gi|257051929|ref|YP_003129762.1|	-	3.3e-17	62.9	37.5	4e-17	62.6	37.5	1.0	1	0	0	1	1	1	1	Sulfite	exporter	TauE/SafE
HTH_IclR	PF09339.10	gi|257051930|ref|YP_003129763.1|	-	3.7e-06	26.6	0.0	1.1e-05	25.1	0.0	1.8	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|257051930|ref|YP_003129763.1|	-	0.00055	19.8	0.0	0.0014	18.5	0.0	1.6	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|257051930|ref|YP_003129763.1|	-	0.00088	18.8	0.0	0.0018	17.8	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.19	gi|257051930|ref|YP_003129763.1|	-	0.00097	19.0	0.0	0.0021	17.9	0.0	1.6	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.20	gi|257051930|ref|YP_003129763.1|	-	0.0017	18.2	0.0	0.0029	17.4	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
Desulfoferrod_N	PF06397.12	gi|257051930|ref|YP_003129763.1|	-	0.0044	16.6	0.5	0.0075	15.9	0.5	1.4	1	0	0	1	1	1	1	Desulfoferrodoxin,	N-terminal	domain
HTH_27	PF13463.6	gi|257051930|ref|YP_003129763.1|	-	0.0053	17.2	0.0	0.017	15.6	0.0	1.9	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_20	PF12840.7	gi|257051930|ref|YP_003129763.1|	-	0.0056	16.7	0.0	0.013	15.5	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
Dimerisation2	PF16864.5	gi|257051930|ref|YP_003129763.1|	-	0.0096	15.9	0.0	0.018	15.0	0.0	1.4	1	0	0	1	1	1	1	Dimerisation	domain
HTH_36	PF13730.6	gi|257051930|ref|YP_003129763.1|	-	0.024	14.6	0.0	0.04	13.9	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_29	PF13551.6	gi|257051930|ref|YP_003129763.1|	-	0.044	13.8	0.0	0.084	12.9	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_DeoR	PF08220.12	gi|257051930|ref|YP_003129763.1|	-	0.053	13.3	0.0	0.09	12.5	0.0	1.3	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
DUF742	PF05331.11	gi|257051930|ref|YP_003129763.1|	-	0.099	12.5	0.0	0.21	11.4	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF742)
HTH_40	PF14493.6	gi|257051930|ref|YP_003129763.1|	-	0.11	13.0	0.0	0.22	12.0	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
TFIIE_alpha	PF02002.17	gi|257051930|ref|YP_003129763.1|	-	0.14	12.0	0.0	0.22	11.4	0.0	1.3	1	0	0	1	1	1	0	TFIIE	alpha	subunit
HTH_38	PF13936.6	gi|257051930|ref|YP_003129763.1|	-	0.21	11.4	0.0	0.38	10.6	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HrcA_DNA-bdg	PF03444.15	gi|257051931|ref|YP_003129764.1|	-	0.0033	17.0	0.0	0.0046	16.6	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
HTH_20	PF12840.7	gi|257051931|ref|YP_003129764.1|	-	0.0084	16.2	0.0	0.01	15.9	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
CMD	PF02627.20	gi|257051934|ref|YP_003129767.1|	-	7e-10	38.8	0.2	8.2e-09	35.4	0.0	2.2	1	1	1	2	2	2	1	Carboxymuconolactone	decarboxylase	family
TauE	PF01925.19	gi|257051935|ref|YP_003129768.1|	-	2.9e-35	122.0	26.1	4.6e-35	121.3	26.1	1.2	1	0	0	1	1	1	1	Sulfite	exporter	TauE/SafE
adh_short_C2	PF13561.6	gi|257051938|ref|YP_003129771.1|	-	2.3e-39	135.3	0.6	6.1e-39	133.9	0.6	1.6	1	1	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|257051938|ref|YP_003129771.1|	-	2.4e-32	112.0	0.1	3.1e-32	111.6	0.1	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
Epimerase	PF01370.21	gi|257051938|ref|YP_003129771.1|	-	1.6e-05	24.5	0.1	2.5e-05	23.8	0.1	1.3	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
KR	PF08659.10	gi|257051938|ref|YP_003129771.1|	-	0.00032	20.7	0.4	0.00071	19.5	0.4	1.7	1	1	0	1	1	1	1	KR	domain
GDP_Man_Dehyd	PF16363.5	gi|257051938|ref|YP_003129771.1|	-	0.00041	19.9	0.0	0.00059	19.3	0.0	1.2	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Patatin	PF01734.22	gi|257051939|ref|YP_003129772.1|	-	3.2e-15	56.9	1.6	6.3e-14	52.6	1.6	2.1	1	1	0	1	1	1	1	Patatin-like	phospholipase
His_biosynth	PF00977.21	gi|257051940|ref|YP_003129773.1|	-	0.00027	20.5	0.2	0.0015	18.1	0.0	2.0	2	0	0	2	2	2	1	Histidine	biosynthesis	protein
ThiG	PF05690.14	gi|257051940|ref|YP_003129773.1|	-	0.00054	19.4	0.6	0.001	18.4	0.6	1.4	1	0	0	1	1	1	1	Thiazole	biosynthesis	protein	ThiG
TIM	PF00121.18	gi|257051940|ref|YP_003129773.1|	-	0.00082	18.8	0.0	0.0012	18.3	0.0	1.2	1	0	0	1	1	1	1	Triosephosphate	isomerase
Ribul_P_3_epim	PF00834.19	gi|257051940|ref|YP_003129773.1|	-	0.039	13.3	0.2	0.22	10.9	0.2	2.0	1	1	0	1	1	1	0	Ribulose-phosphate	3	epimerase	family
Aldo_ket_red	PF00248.21	gi|257051941|ref|YP_003129774.1|	-	6.5e-55	186.4	0.0	1.4e-52	178.7	0.0	2.0	1	1	0	1	1	1	1	Aldo/keto	reductase	family
TAL_FSA	PF00923.19	gi|257051942|ref|YP_003129775.1|	-	2.6e-54	184.5	0.0	6.4e-54	183.2	0.0	1.5	1	1	0	1	1	1	1	Transaldolase/Fructose-6-phosphate	aldolase
ALAD	PF00490.21	gi|257051942|ref|YP_003129775.1|	-	0.049	12.8	0.3	1.5	7.9	0.0	2.3	1	1	1	2	2	2	0	Delta-aminolevulinic	acid	dehydratase
ABC_transp_aux	PF09822.9	gi|257051942|ref|YP_003129775.1|	-	0.15	11.5	0.0	1.1	8.7	0.0	2.0	1	1	1	2	2	2	0	ABC-type	uncharacterized	transport	system
Transketolase_C	PF02780.20	gi|257051943|ref|YP_003129776.1|	-	5.6e-37	126.4	0.4	1.3e-36	125.2	0.4	1.7	1	0	0	1	1	1	1	Transketolase,	C-terminal	domain
Transket_pyr	PF02779.24	gi|257051943|ref|YP_003129776.1|	-	6.5e-33	113.9	0.0	1.3e-32	112.9	0.0	1.5	2	0	0	2	2	2	1	Transketolase,	pyrimidine	binding	domain
PFOR_II	PF17147.4	gi|257051943|ref|YP_003129776.1|	-	7e-05	23.1	0.1	0.00019	21.7	0.1	1.7	1	0	0	1	1	1	1	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
Transketolase_N	PF00456.21	gi|257051944|ref|YP_003129777.1|	-	2.2e-43	148.5	0.0	3.3e-43	147.9	0.0	1.2	1	0	0	1	1	1	1	Transketolase,	thiamine	diphosphate	binding	domain
DXP_synthase_N	PF13292.6	gi|257051944|ref|YP_003129777.1|	-	1.4e-13	50.7	0.0	2.9e-10	39.8	0.0	2.4	1	1	0	2	2	2	2	1-deoxy-D-xylulose-5-phosphate	synthase
XFP_N	PF09364.10	gi|257051944|ref|YP_003129777.1|	-	2.1e-07	30.1	0.1	6.8e-07	28.4	0.0	1.8	3	0	0	3	3	3	1	XFP	N-terminal	domain
E1_dh	PF00676.20	gi|257051944|ref|YP_003129777.1|	-	4.6e-06	25.8	0.0	6.5e-06	25.3	0.0	1.1	1	0	0	1	1	1	1	Dehydrogenase	E1	component
TPP_enzyme_C	PF02775.21	gi|257051944|ref|YP_003129777.1|	-	1.2e-05	25.2	0.0	0.00025	20.9	0.0	2.2	1	1	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
SBP_bac_8	PF13416.6	gi|257051945|ref|YP_003129778.1|	-	6.6e-19	68.8	0.5	8.4e-19	68.5	0.5	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|257051945|ref|YP_003129778.1|	-	3.6e-10	40.3	1.7	5.4e-10	39.7	1.7	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.6	gi|257051945|ref|YP_003129778.1|	-	0.0038	17.0	1.1	0.021	14.6	1.1	2.0	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
Glyco_hydro_4	PF02056.16	gi|257051946|ref|YP_003129779.1|	-	1.9e-44	151.4	0.0	2.7e-44	150.9	0.0	1.2	1	0	0	1	1	1	1	Family	4	glycosyl	hydrolase
Glyco_hydro_4C	PF11975.8	gi|257051946|ref|YP_003129779.1|	-	4.2e-40	138.0	0.0	6.5e-40	137.4	0.0	1.3	1	0	0	1	1	1	1	Family	4	glycosyl	hydrolase	C-terminal	domain
UDPG_MGDP_dh_C	PF03720.15	gi|257051946|ref|YP_003129779.1|	-	0.065	13.7	0.3	0.81	10.1	0.1	2.5	2	0	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
Ldh_1_N	PF00056.23	gi|257051946|ref|YP_003129779.1|	-	0.075	13.1	0.2	0.9	9.6	0.0	2.6	3	0	0	3	3	3	0	lactate/malate	dehydrogenase,	NAD	binding	domain
Rrf2	PF02082.20	gi|257051948|ref|YP_003129781.1|	-	4.2e-07	30.2	0.0	1.1e-06	28.9	0.0	1.7	2	0	0	2	2	2	1	Transcriptional	regulator
HTH_20	PF12840.7	gi|257051948|ref|YP_003129781.1|	-	0.00075	19.5	0.1	0.0028	17.7	0.0	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
LexA_DNA_bind	PF01726.16	gi|257051948|ref|YP_003129781.1|	-	0.0022	17.7	0.0	0.0044	16.8	0.0	1.4	1	0	0	1	1	1	1	LexA	DNA	binding	domain
HTH_IclR	PF09339.10	gi|257051948|ref|YP_003129781.1|	-	0.011	15.5	0.1	0.2	11.5	0.0	2.3	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
SgrR_N	PF12793.7	gi|257051948|ref|YP_003129781.1|	-	0.069	13.4	0.0	0.12	12.6	0.0	1.5	1	0	0	1	1	1	0	Sugar	transport-related	sRNA	regulator	N-term
MarR_2	PF12802.7	gi|257051948|ref|YP_003129781.1|	-	0.12	12.3	0.1	0.35	10.8	0.0	1.8	2	0	0	2	2	2	0	MarR	family
Ets	PF00178.22	gi|257051949|ref|YP_003129782.1|	-	0.093	13.2	0.0	0.19	12.2	0.0	1.5	2	0	0	2	2	2	0	Ets-domain
Glyco_hydro_3	PF00933.21	gi|257051950|ref|YP_003129783.1|	-	5.7e-81	272.4	0.0	8.3e-81	271.8	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	N	terminal	domain
Glyco_hydro_3_C	PF01915.22	gi|257051950|ref|YP_003129783.1|	-	2.1e-54	184.6	0.0	4.7e-54	183.5	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	C-terminal	domain
Fn3-like	PF14310.6	gi|257051950|ref|YP_003129783.1|	-	4.1e-21	74.9	0.1	9.8e-21	73.7	0.1	1.7	1	0	0	1	1	1	1	Fibronectin	type	III-like	domain
adh_short_C2	PF13561.6	gi|257051951|ref|YP_003129784.1|	-	5.8e-64	215.9	0.2	6.8e-64	215.6	0.2	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|257051951|ref|YP_003129784.1|	-	1.8e-55	187.4	0.6	2.2e-55	187.2	0.6	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|257051951|ref|YP_003129784.1|	-	6.8e-11	42.4	0.2	1.2e-10	41.6	0.2	1.3	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|257051951|ref|YP_003129784.1|	-	0.013	15.0	0.1	0.023	14.1	0.1	1.5	2	0	0	2	2	2	0	NAD	dependent	epimerase/dehydratase	family
UxuA	PF03786.13	gi|257051952|ref|YP_003129785.1|	-	2.3e-79	266.8	0.1	1.5e-60	204.9	0.0	2.0	1	1	1	2	2	2	2	D-mannonate	dehydratase	(UxuA)
AP_endonuc_2	PF01261.24	gi|257051952|ref|YP_003129785.1|	-	4.7e-20	71.9	0.1	5.9e-20	71.6	0.1	1.1	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
UxaC	PF02614.14	gi|257051953|ref|YP_003129786.1|	-	1.2e-138	462.9	0.1	1.3e-138	462.7	0.1	1.0	1	0	0	1	1	1	1	Glucuronate	isomerase
Glyco_hydro_67M	PF07488.12	gi|257051954|ref|YP_003129787.1|	-	3.3e-132	440.5	0.0	4.3e-132	440.1	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	67	middle	domain
Glyco_hydro_67C	PF07477.12	gi|257051954|ref|YP_003129787.1|	-	2.6e-85	285.5	0.5	4e-85	284.9	0.5	1.3	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	67	C-terminus
Glyco_hydro_67N	PF03648.14	gi|257051954|ref|YP_003129787.1|	-	1.5e-22	80.1	0.0	2.3e-22	79.6	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	67	N-terminus
DUF4838	PF16126.5	gi|257051954|ref|YP_003129787.1|	-	0.0019	17.6	0.0	0.0041	16.5	0.0	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4838)
Mut7-C	PF01927.16	gi|257051955|ref|YP_003129788.1|	-	6.3e-44	149.6	0.0	7e-44	149.5	0.0	1.0	1	0	0	1	1	1	1	Mut7-C	RNAse	domain
DUF5615	PF18480.1	gi|257051955|ref|YP_003129788.1|	-	1.9e-05	24.3	0.1	3.3e-05	23.5	0.1	1.5	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF5615)
Penicillinase_R	PF03965.16	gi|257051956|ref|YP_003129789.1|	-	0.039	14.3	0.0	0.063	13.6	0.0	1.4	1	0	0	1	1	1	0	Penicillinase	repressor
DUF3040	PF11239.8	gi|257051959|ref|YP_003129792.1|	-	0.046	14.0	3.3	1.3	9.3	1.4	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3040)
Imm27	PF15590.6	gi|257051959|ref|YP_003129792.1|	-	0.087	12.6	0.0	0.15	11.9	0.0	1.3	1	0	0	1	1	1	0	Immunity	protein	27
DUF4131	PF13567.6	gi|257051960|ref|YP_003129793.1|	-	0.028	14.1	0.0	0.031	13.9	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
CAAD	PF14159.6	gi|257051960|ref|YP_003129793.1|	-	0.1	12.4	0.9	0.13	12.1	0.9	1.1	1	0	0	1	1	1	0	CAAD	domains	of	cyanobacterial	aminoacyl-tRNA	synthetase
DUF2975	PF11188.8	gi|257051960|ref|YP_003129793.1|	-	0.17	11.7	2.0	0.24	11.3	2.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2975)
DUF2721	PF11026.8	gi|257051960|ref|YP_003129793.1|	-	3	7.7	6.3	1.1	9.2	1.6	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2721)
NUDIX	PF00293.28	gi|257051961|ref|YP_003129794.1|	-	4.4e-17	62.4	1.8	6.9e-17	61.7	1.9	1.3	1	1	0	1	1	1	1	NUDIX	domain
AAA_17	PF13207.6	gi|257051961|ref|YP_003129794.1|	-	0.017	15.5	0.1	0.021	15.3	0.1	1.3	1	1	0	1	1	1	0	AAA	domain
NUDIX_4	PF14815.6	gi|257051961|ref|YP_003129794.1|	-	0.094	12.7	0.1	0.13	12.3	0.1	1.3	1	0	0	1	1	1	0	NUDIX	domain
Ribosomal_S10	PF00338.22	gi|257051962|ref|YP_003129795.1|	-	1.2e-11	44.7	0.0	1.4e-11	44.5	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S10p/S20e
Peptidase_M20	PF01546.28	gi|257051963|ref|YP_003129796.1|	-	3.9e-22	79.0	5.8	5.1e-22	78.6	5.8	1.2	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|257051963|ref|YP_003129796.1|	-	8.1e-11	41.8	0.4	1.7e-10	40.8	0.4	1.5	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
FAD_binding_2	PF00890.24	gi|257051964|ref|YP_003129797.1|	-	1.1e-11	44.5	9.0	3.4e-07	29.7	1.1	2.5	3	0	0	3	3	3	2	FAD	binding	domain
FAD_binding_3	PF01494.19	gi|257051964|ref|YP_003129797.1|	-	2.1e-10	40.4	2.1	0.00025	20.4	0.1	2.4	2	1	0	2	2	2	2	FAD	binding	domain
Trp_halogenase	PF04820.14	gi|257051964|ref|YP_003129797.1|	-	2.5e-09	36.5	1.7	5.1e-07	28.9	0.0	2.3	2	0	0	2	2	2	2	Tryptophan	halogenase
DAO	PF01266.24	gi|257051964|ref|YP_003129797.1|	-	1.1e-08	35.1	9.2	0.00042	20.0	0.6	2.8	2	1	1	3	3	3	2	FAD	dependent	oxidoreductase
FAD_oxidored	PF12831.7	gi|257051964|ref|YP_003129797.1|	-	4e-08	33.0	5.0	4e-08	33.0	5.0	2.5	2	1	0	2	2	2	1	FAD	dependent	oxidoreductase
Pyr_redox	PF00070.27	gi|257051964|ref|YP_003129797.1|	-	2.7e-07	31.0	1.3	0.00045	20.7	0.8	2.6	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|257051964|ref|YP_003129797.1|	-	7.1e-06	25.3	0.3	1e-05	24.8	0.3	1.4	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
NAD_binding_8	PF13450.6	gi|257051964|ref|YP_003129797.1|	-	1.6e-05	25.1	0.3	1.6e-05	25.1	0.3	2.5	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
Thi4	PF01946.17	gi|257051964|ref|YP_003129797.1|	-	7e-05	22.2	1.8	0.00011	21.6	0.8	1.8	2	0	0	2	2	2	1	Thi4	family
HI0933_like	PF03486.14	gi|257051964|ref|YP_003129797.1|	-	7.6e-05	21.6	0.7	0.0011	17.8	0.6	2.1	2	0	0	2	2	2	1	HI0933-like	protein
Pyr_redox_2	PF07992.14	gi|257051964|ref|YP_003129797.1|	-	8e-05	22.0	5.6	0.00028	20.2	0.3	2.7	2	1	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
Lycopene_cycl	PF05834.12	gi|257051964|ref|YP_003129797.1|	-	0.00011	21.4	3.3	0.077	12.0	0.6	2.9	3	0	0	3	3	3	2	Lycopene	cyclase	protein
ApbA	PF02558.16	gi|257051964|ref|YP_003129797.1|	-	0.011	15.4	0.0	0.023	14.3	0.0	1.5	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
3HCDH_N	PF02737.18	gi|257051964|ref|YP_003129797.1|	-	0.034	14.0	0.1	0.062	13.2	0.1	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|257051964|ref|YP_003129797.1|	-	0.044	13.1	0.2	0.044	13.1	0.2	1.7	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
NAD_binding_9	PF13454.6	gi|257051964|ref|YP_003129797.1|	-	0.074	13.0	0.2	0.48	10.4	0.1	2.3	3	0	0	3	3	2	0	FAD-NAD(P)-binding
Shikimate_DH	PF01488.20	gi|257051964|ref|YP_003129797.1|	-	0.14	12.2	0.0	0.54	10.3	0.0	2.0	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
Pyr_redox_3	PF13738.6	gi|257051964|ref|YP_003129797.1|	-	0.15	11.3	2.1	0.11	11.7	0.5	1.6	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
GMC_oxred_N	PF00732.19	gi|257051964|ref|YP_003129797.1|	-	0.19	11.0	0.1	8.6	5.6	0.0	2.2	2	0	0	2	2	2	0	GMC	oxidoreductase
Fer2	PF00111.27	gi|257051965|ref|YP_003129798.1|	-	1.4e-11	44.1	1.9	2.1e-11	43.6	1.9	1.3	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_3	PF13085.6	gi|257051965|ref|YP_003129798.1|	-	0.0011	18.9	0.1	0.0014	18.6	0.1	1.1	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
DHODB_Fe-S_bind	PF10418.9	gi|257051965|ref|YP_003129798.1|	-	0.05	13.4	0.6	0.16	11.8	0.3	1.9	2	0	0	2	2	2	0	Iron-sulfur	cluster	binding	domain	of	dihydroorotate	dehydrogenase	B
PQQ_2	PF13360.6	gi|257051966|ref|YP_003129799.1|	-	2.9e-30	105.6	9.6	1.3e-19	70.8	7.2	3.6	1	1	2	3	3	3	3	PQQ-like	domain
PQQ_3	PF13570.6	gi|257051966|ref|YP_003129799.1|	-	4.2e-15	55.7	25.5	0.0028	18.1	0.0	8.4	9	0	0	9	9	9	5	PQQ-like	domain
PQQ	PF01011.21	gi|257051966|ref|YP_003129799.1|	-	3e-13	49.0	2.3	0.054	13.4	0.0	8.1	8	0	0	8	8	8	4	PQQ	enzyme	repeat
SH3_15	PF18346.1	gi|257051966|ref|YP_003129799.1|	-	0.03	14.7	0.1	0.11	12.8	0.0	2.0	2	1	0	2	2	2	0	Mind	bomb	SH3	repeat	domain
PQQ_2	PF13360.6	gi|257051967|ref|YP_003129800.1|	-	2.6e-29	102.5	10.0	1.2e-15	57.7	3.3	3.6	1	1	3	4	4	4	3	PQQ-like	domain
PQQ	PF01011.21	gi|257051967|ref|YP_003129800.1|	-	3.6e-20	70.9	11.0	0.00012	21.8	0.2	6.6	7	0	0	7	7	7	5	PQQ	enzyme	repeat
PQQ_3	PF13570.6	gi|257051967|ref|YP_003129800.1|	-	2.5e-15	56.4	27.5	2.1e-06	28.0	0.6	6.8	7	1	0	7	7	7	4	PQQ-like	domain
PLDc	PF00614.22	gi|257051967|ref|YP_003129800.1|	-	0.057	13.6	0.2	0.27	11.5	0.1	2.3	2	0	0	2	2	2	0	Phospholipase	D	Active	site	motif
Pyr_redox_2	PF07992.14	gi|257051968|ref|YP_003129801.1|	-	1.5e-35	122.9	0.6	2e-35	122.4	0.6	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|257051968|ref|YP_003129801.1|	-	6.1e-10	39.5	2.0	4.4e-08	33.6	0.0	2.8	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|257051968|ref|YP_003129801.1|	-	1.7e-08	34.7	0.0	3.5e-08	33.7	0.0	1.5	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
GIDA	PF01134.22	gi|257051968|ref|YP_003129801.1|	-	0.012	14.7	0.0	0.61	9.1	0.0	2.3	2	1	0	2	2	2	0	Glucose	inhibited	division	protein	A
Semialdhyde_dh	PF01118.24	gi|257051968|ref|YP_003129801.1|	-	0.031	14.7	0.2	2	8.9	0.0	3.3	3	1	1	4	4	4	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
Sacchrp_dh_NADP	PF03435.18	gi|257051968|ref|YP_003129801.1|	-	0.055	13.7	0.0	7.1	6.9	0.1	2.7	2	1	0	2	2	2	0	Saccharopine	dehydrogenase	NADP	binding	domain
NAD_binding_9	PF13454.6	gi|257051968|ref|YP_003129801.1|	-	0.15	12.0	3.3	1.7	8.6	1.5	2.7	2	1	0	2	2	2	0	FAD-NAD(P)-binding
DAO	PF01266.24	gi|257051968|ref|YP_003129801.1|	-	0.24	10.9	6.3	1.4	8.4	0.1	2.7	2	1	0	2	2	2	0	FAD	dependent	oxidoreductase
PAPS_reduct	PF01507.19	gi|257051970|ref|YP_003129803.1|	-	3.8e-19	69.4	0.0	4e-15	56.3	0.0	3.1	2	1	0	2	2	2	2	Phosphoadenosine	phosphosulfate	reductase	family
Diphthami_syn_2	PF01902.17	gi|257051970|ref|YP_003129803.1|	-	0.033	13.7	0.0	0.097	12.2	0.0	1.7	2	0	0	2	2	2	0	Diphthamide	synthase
ATP_bind_3	PF01171.20	gi|257051970|ref|YP_003129803.1|	-	0.14	11.9	0.0	0.29	10.9	0.0	1.4	1	0	0	1	1	1	0	PP-loop	family
PAS_4	PF08448.10	gi|257051971|ref|YP_003129804.1|	-	3.9e-43	146.2	7.4	3e-17	62.8	0.2	3.7	3	0	0	3	3	3	3	PAS	fold
PAS_9	PF13426.7	gi|257051971|ref|YP_003129804.1|	-	3.5e-27	94.7	0.0	6.7e-10	39.2	0.0	4.3	3	0	0	3	3	3	3	PAS	domain
PAS	PF00989.25	gi|257051971|ref|YP_003129804.1|	-	3.8e-24	84.9	0.1	1.2e-06	28.5	0.0	3.9	3	0	0	3	3	3	3	PAS	fold
Response_reg	PF00072.24	gi|257051971|ref|YP_003129804.1|	-	5e-22	78.2	0.0	1.2e-21	76.9	0.0	1.7	1	0	0	1	1	1	1	Response	regulator	receiver	domain
GAF_2	PF13185.6	gi|257051971|ref|YP_003129804.1|	-	5.7e-22	78.5	1.6	1.8e-14	54.2	0.1	4.0	3	0	0	3	3	3	2	GAF	domain
HATPase_c	PF02518.26	gi|257051971|ref|YP_003129804.1|	-	2.8e-17	63.2	0.0	1.1e-16	61.3	0.0	2.0	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
GAF_3	PF13492.6	gi|257051971|ref|YP_003129804.1|	-	1.5e-13	51.2	0.0	4.9e-06	26.9	0.0	3.1	3	0	0	3	3	3	2	GAF	domain
PAS_8	PF13188.7	gi|257051971|ref|YP_003129804.1|	-	2.5e-12	46.5	3.1	4.3e-07	29.8	0.0	5.0	5	0	0	5	5	4	3	PAS	domain
GAF	PF01590.26	gi|257051971|ref|YP_003129804.1|	-	1.9e-11	44.7	0.0	0.00094	19.8	0.0	3.8	3	0	0	3	3	3	2	GAF	domain
HisKA	PF00512.25	gi|257051971|ref|YP_003129804.1|	-	3.3e-11	43.1	7.1	3.6e-11	42.9	1.2	3.8	3	1	0	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_3	PF08447.12	gi|257051971|ref|YP_003129804.1|	-	3.8e-11	43.1	0.0	3.3e-07	30.5	0.0	3.2	2	0	0	2	2	2	2	PAS	fold
HATPase_c_2	PF13581.6	gi|257051971|ref|YP_003129804.1|	-	0.0014	18.6	1.7	0.0025	17.8	0.1	2.2	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
HTH_34	PF13601.6	gi|257051972|ref|YP_003129805.1|	-	1.6e-23	82.6	0.0	1.8e-23	82.5	0.0	1.0	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_20	PF12840.7	gi|257051972|ref|YP_003129805.1|	-	2.5e-11	43.5	0.0	4.2e-11	42.7	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|257051972|ref|YP_003129805.1|	-	4.1e-07	29.8	0.0	6.5e-07	29.1	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
PadR	PF03551.14	gi|257051972|ref|YP_003129805.1|	-	5.3e-06	26.3	0.0	7.4e-06	25.8	0.0	1.2	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_24	PF13412.6	gi|257051972|ref|YP_003129805.1|	-	2.7e-05	23.6	0.0	4.8e-05	22.8	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|257051972|ref|YP_003129805.1|	-	6.7e-05	22.7	0.0	8.5e-05	22.4	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HxlR	PF01638.17	gi|257051972|ref|YP_003129805.1|	-	0.00049	19.9	0.0	0.00057	19.7	0.0	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
HTH_45	PF14947.6	gi|257051972|ref|YP_003129805.1|	-	0.004	17.1	0.0	0.0052	16.7	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix
MarR	PF01047.22	gi|257051972|ref|YP_003129805.1|	-	0.0085	16.0	0.0	0.011	15.6	0.0	1.3	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|257051972|ref|YP_003129805.1|	-	0.014	15.3	0.0	0.019	14.8	0.0	1.2	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HBM	PF16591.5	gi|257051972|ref|YP_003129805.1|	-	0.016	14.6	0.0	0.041	13.3	0.0	1.5	2	0	0	2	2	2	0	Helical	bimodular	sensor	domain
HTH_27	PF13463.6	gi|257051972|ref|YP_003129805.1|	-	0.022	15.3	0.0	0.029	14.8	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF4191	PF13829.6	gi|257051973|ref|YP_003129806.1|	-	0.02	14.2	0.6	0.02	14.2	0.6	2.3	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4191)
PNTB	PF02233.16	gi|257051973|ref|YP_003129806.1|	-	0.077	11.9	4.6	0.089	11.7	4.6	1.1	1	0	0	1	1	1	0	NAD(P)	transhydrogenase	beta	subunit
MFS_1	PF07690.16	gi|257051973|ref|YP_003129806.1|	-	0.14	11.1	23.2	0.049	12.5	6.0	2.1	2	0	0	2	2	2	0	Major	Facilitator	Superfamily
Saf_2TM	PF18303.1	gi|257051973|ref|YP_003129806.1|	-	0.15	11.7	1.0	5.3	6.6	0.1	2.3	2	0	0	2	2	2	0	SAVED-fused	2TM	effector	domain
DUF998	PF06197.13	gi|257051973|ref|YP_003129806.1|	-	2.4	7.7	38.3	0.73	9.4	27.9	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF998)
ABC2_membrane_2	PF12679.7	gi|257051974|ref|YP_003129807.1|	-	1.1e-33	116.7	17.8	2.3e-32	112.4	17.8	2.0	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.7	gi|257051974|ref|YP_003129807.1|	-	1.6e-09	37.9	5.5	1.6e-09	37.9	5.5	1.8	2	1	0	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.7	gi|257051974|ref|YP_003129807.1|	-	8.1e-05	21.9	21.1	9.9e-05	21.6	21.1	1.1	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_5	PF13346.6	gi|257051974|ref|YP_003129807.1|	-	0.00014	21.5	10.7	0.00031	20.4	10.7	1.6	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC_tran	PF00005.27	gi|257051975|ref|YP_003129808.1|	-	1e-29	103.8	0.0	1.6e-29	103.2	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|257051975|ref|YP_003129808.1|	-	2.6e-13	50.5	0.1	1.8e-08	34.5	0.0	2.4	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|257051975|ref|YP_003129808.1|	-	0.04	13.7	0.2	0.073	12.8	0.2	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
RsgA_GTPase	PF03193.16	gi|257051975|ref|YP_003129808.1|	-	0.048	13.6	0.1	0.087	12.7	0.1	1.3	1	0	0	1	1	1	0	RsgA	GTPase
AAA_23	PF13476.6	gi|257051975|ref|YP_003129808.1|	-	0.052	14.0	0.1	0.079	13.5	0.1	1.2	1	0	0	1	1	1	0	AAA	domain
DUF4162	PF13732.6	gi|257051975|ref|YP_003129808.1|	-	0.13	12.9	0.0	0.23	12.2	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4162)
AAA_22	PF13401.6	gi|257051975|ref|YP_003129808.1|	-	0.17	12.2	0.0	0.58	10.4	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
MMR_HSR1	PF01926.23	gi|257051975|ref|YP_003129808.1|	-	0.18	11.9	0.1	0.9	9.6	0.0	2.1	2	1	0	2	2	2	0	50S	ribosome-binding	GTPase
AAA_15	PF13175.6	gi|257051975|ref|YP_003129808.1|	-	0.22	11.2	0.0	0.3	10.7	0.0	1.2	1	0	0	1	1	1	0	AAA	ATPase	domain
Spt5-NGN	PF03439.13	gi|257051976|ref|YP_003129809.1|	-	7.8e-25	86.6	0.1	1.2e-24	86.0	0.1	1.3	1	0	0	1	1	1	1	Early	transcription	elongation	factor	of	RNA	pol	II,	NGN	section
KOW	PF00467.29	gi|257051976|ref|YP_003129809.1|	-	6.1e-08	32.4	0.8	1.3e-07	31.3	0.3	1.9	2	0	0	2	2	2	1	KOW	motif
DbpA	PF03880.15	gi|257051976|ref|YP_003129809.1|	-	0.046	13.7	0.2	0.31	11.1	0.1	2.1	2	0	0	2	2	2	0	DbpA	RNA	binding	domain
Glyco_hydro_65C	PF03633.15	gi|257051976|ref|YP_003129809.1|	-	0.11	12.4	0.2	0.19	11.7	0.2	1.4	1	0	0	1	1	1	0	Glycosyl	hydrolase	family	65,	C-terminal	domain
SecE	PF00584.20	gi|257051977|ref|YP_003129810.1|	-	2.3e-05	24.2	0.5	2.5e-05	24.1	0.5	1.1	1	0	0	1	1	1	1	SecE/Sec61-gamma	subunits	of	protein	translocation	complex
Tubulin	PF00091.25	gi|257051978|ref|YP_003129811.1|	-	4e-41	141.4	0.5	6e-41	140.8	0.5	1.3	1	0	0	1	1	1	1	Tubulin/FtsZ	family,	GTPase	domain
FtsZ_C	PF12327.8	gi|257051978|ref|YP_003129811.1|	-	3.6e-33	113.7	1.5	1.3e-32	112.0	0.3	2.4	2	0	0	2	2	2	1	FtsZ	family,	C-terminal	domain
NAD_binding_10	PF13460.6	gi|257051978|ref|YP_003129811.1|	-	0.041	13.8	2.6	0.1	12.5	0.2	2.3	2	0	0	2	2	2	0	NAD(P)H-binding
Tubulin_2	PF13809.6	gi|257051978|ref|YP_003129811.1|	-	0.078	12.1	7.0	0.49	9.5	7.0	2.1	1	1	0	1	1	1	0	Tubulin	like
Semialdhyde_dh	PF01118.24	gi|257051978|ref|YP_003129811.1|	-	0.15	12.5	2.0	1.9	8.9	2.0	2.3	1	1	0	1	1	1	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
Shikimate_DH	PF01488.20	gi|257051978|ref|YP_003129811.1|	-	0.15	12.1	0.9	1.5	8.8	0.5	2.3	1	1	1	2	2	2	0	Shikimate	/	quinate	5-dehydrogenase
NmrA	PF05368.13	gi|257051978|ref|YP_003129811.1|	-	0.35	10.4	1.8	0.63	9.5	1.7	1.5	1	1	0	1	1	1	0	NmrA-like	family
FAD_binding_6	PF00970.24	gi|257051979|ref|YP_003129812.1|	-	1.4e-08	35.0	0.0	1.8e-08	34.6	0.0	1.2	1	0	0	1	1	1	1	Oxidoreductase	FAD-binding	domain
POR_N	PF01855.19	gi|257051980|ref|YP_003129813.1|	-	4e-58	196.9	0.9	6.5e-58	196.2	0.9	1.3	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
POR	PF01558.18	gi|257051980|ref|YP_003129813.1|	-	1.9e-39	135.6	0.6	5.3e-39	134.1	0.6	1.8	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
TPP_enzyme_N	PF02776.18	gi|257051980|ref|YP_003129813.1|	-	1.7e-06	27.7	1.4	3.1e-06	26.9	0.7	1.8	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
PFOR_II	PF17147.4	gi|257051980|ref|YP_003129813.1|	-	0.00044	20.5	0.0	0.001	19.3	0.0	1.7	1	0	0	1	1	1	1	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
TPP_enzyme_C	PF02775.21	gi|257051981|ref|YP_003129814.1|	-	2.2e-33	115.2	0.4	3.2e-33	114.7	0.4	1.3	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
PFO_beta_C	PF12367.8	gi|257051981|ref|YP_003129814.1|	-	1.7e-17	63.3	0.1	4e-17	62.1	0.1	1.6	1	0	0	1	1	1	1	Pyruvate	ferredoxin	oxidoreductase	beta	subunit	C	terminal
Phage_holin_3_6	PF07332.11	gi|257051982|ref|YP_003129815.1|	-	0.34	11.0	7.4	0.43	10.6	7.4	1.1	1	0	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
NifU	PF01106.17	gi|257051984|ref|YP_003129817.1|	-	4.1e-14	52.5	0.1	5.5e-14	52.1	0.1	1.2	1	0	0	1	1	1	1	NifU-like	domain
ApbA	PF02558.16	gi|257051985|ref|YP_003129818.1|	-	2.3e-30	105.3	0.2	3.3e-30	104.8	0.2	1.2	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
ApbA_C	PF08546.11	gi|257051985|ref|YP_003129818.1|	-	3.5e-30	104.8	0.1	9e-30	103.4	0.0	1.8	3	0	0	3	3	3	1	Ketopantoate	reductase	PanE/ApbA	C	terminal
DUF111	PF01969.17	gi|257051986|ref|YP_003129819.1|	-	6e-128	427.1	4.9	6.8e-128	426.9	4.9	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF111
SelP_N	PF04592.14	gi|257051986|ref|YP_003129819.1|	-	2	7.8	9.2	5	6.5	9.0	1.6	2	0	0	2	2	2	0	Selenoprotein	P,	N	terminal	region
ABC_tran	PF00005.27	gi|257051988|ref|YP_003129821.1|	-	2.5e-31	109.0	0.0	3.3e-31	108.6	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|257051988|ref|YP_003129821.1|	-	1.9e-14	54.2	0.0	6.4e-10	39.3	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_15	PF13175.6	gi|257051988|ref|YP_003129821.1|	-	0.005	16.6	0.0	3	7.5	0.0	2.0	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_23	PF13476.6	gi|257051988|ref|YP_003129821.1|	-	0.013	16.0	0.0	0.019	15.5	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|257051988|ref|YP_003129821.1|	-	0.096	13.1	0.1	0.16	12.3	0.1	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA	PF00004.29	gi|257051988|ref|YP_003129821.1|	-	0.15	12.5	0.1	0.62	10.5	0.1	1.9	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF460	PF04312.13	gi|257051989|ref|YP_003129822.1|	-	0.036	13.8	1.0	0.084	12.6	1.0	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF460)
Rad51	PF08423.11	gi|257051990|ref|YP_003129823.1|	-	9.2e-28	97.2	0.0	1.2e-27	96.9	0.0	1.0	1	0	0	1	1	1	1	Rad51
RecA	PF00154.21	gi|257051990|ref|YP_003129823.1|	-	3.9e-11	42.9	0.0	5.5e-11	42.4	0.0	1.2	1	0	0	1	1	1	1	recA	bacterial	DNA	recombination	protein
AAA_25	PF13481.6	gi|257051990|ref|YP_003129823.1|	-	9.8e-11	41.6	0.8	1.7e-10	40.8	0.8	1.3	1	0	0	1	1	1	1	AAA	domain
ATPase	PF06745.13	gi|257051990|ref|YP_003129823.1|	-	1.6e-09	37.4	0.0	3.3e-09	36.4	0.0	1.6	1	1	0	1	1	1	1	KaiC
AAA_24	PF13479.6	gi|257051990|ref|YP_003129823.1|	-	5.4e-09	36.1	0.0	6.9e-08	32.5	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
Zot	PF05707.12	gi|257051990|ref|YP_003129823.1|	-	4.5e-07	29.7	0.0	4.9e-07	29.6	0.0	1.2	1	0	0	1	1	1	1	Zonular	occludens	toxin	(Zot)
DnaB_C	PF03796.15	gi|257051990|ref|YP_003129823.1|	-	0.00026	20.4	0.9	0.0022	17.4	0.4	1.9	1	1	1	2	2	2	1	DnaB-like	helicase	C	terminal	domain
AAA_16	PF13191.6	gi|257051990|ref|YP_003129823.1|	-	0.015	15.7	0.5	0.019	15.4	0.5	1.2	1	0	0	1	1	1	0	AAA	ATPase	domain
IstB_IS21	PF01695.17	gi|257051990|ref|YP_003129823.1|	-	0.029	14.1	0.4	0.18	11.5	0.1	2.0	1	1	1	2	2	2	0	IstB-like	ATP	binding	protein
Isochorismatase	PF00857.20	gi|257051990|ref|YP_003129823.1|	-	0.043	14.0	0.0	0.066	13.4	0.0	1.3	1	0	0	1	1	1	0	Isochorismatase	family
Zeta_toxin	PF06414.12	gi|257051990|ref|YP_003129823.1|	-	0.06	12.6	0.8	0.11	11.8	0.1	1.7	2	0	0	2	2	2	0	Zeta	toxin
ATPase_2	PF01637.18	gi|257051990|ref|YP_003129823.1|	-	0.18	11.7	0.0	0.23	11.3	0.0	1.2	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
PhoU	PF01895.19	gi|257051992|ref|YP_003129825.1|	-	5.4e-39	132.6	14.2	1.7e-22	79.7	1.0	2.1	2	0	0	2	2	2	2	PhoU	domain
ATP-synt_D	PF01813.17	gi|257051992|ref|YP_003129825.1|	-	0.006	16.4	0.0	0.0093	15.8	0.0	1.4	1	0	0	1	1	1	1	ATP	synthase	subunit	D
UPF0515	PF15135.6	gi|257051992|ref|YP_003129825.1|	-	0.24	10.7	0.8	0.35	10.2	0.8	1.2	1	0	0	1	1	1	0	Uncharacterised	protein	UPF0515
ABC_tran	PF00005.27	gi|257051993|ref|YP_003129826.1|	-	1.8e-33	116.0	0.0	4e-33	114.8	0.0	1.6	2	0	0	2	2	1	1	ABC	transporter
AAA_21	PF13304.6	gi|257051993|ref|YP_003129826.1|	-	6.5e-13	49.1	0.0	3.4e-06	27.1	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|257051993|ref|YP_003129826.1|	-	1.2e-08	34.7	0.2	7.1e-07	28.9	0.2	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.6	gi|257051993|ref|YP_003129826.1|	-	7.5e-07	29.2	0.0	9.4e-06	25.6	0.0	2.0	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|257051993|ref|YP_003129826.1|	-	4.2e-05	23.8	0.0	0.00021	21.6	0.0	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|257051993|ref|YP_003129826.1|	-	0.00025	21.5	0.1	0.00062	20.2	0.1	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_25	PF13481.6	gi|257051993|ref|YP_003129826.1|	-	0.00044	19.9	0.1	0.012	15.3	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|257051993|ref|YP_003129826.1|	-	0.00046	20.1	0.0	0.0013	18.7	0.0	1.7	2	0	0	2	2	2	1	RsgA	GTPase
AAA_29	PF13555.6	gi|257051993|ref|YP_003129826.1|	-	0.00081	19.1	0.0	0.0019	17.9	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|257051993|ref|YP_003129826.1|	-	0.0018	18.8	0.0	0.0044	17.6	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
DeoRC	PF00455.22	gi|257051993|ref|YP_003129826.1|	-	0.0042	17.0	0.0	0.0071	16.3	0.0	1.3	1	0	0	1	1	1	1	DeoR	C	terminal	sensor	domain
Rad17	PF03215.15	gi|257051993|ref|YP_003129826.1|	-	0.0085	16.0	0.0	0.015	15.2	0.0	1.4	1	0	0	1	1	1	1	Rad17	P-loop	domain
AAA_30	PF13604.6	gi|257051993|ref|YP_003129826.1|	-	0.0098	15.6	0.1	0.85	9.3	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_18	PF13238.6	gi|257051993|ref|YP_003129826.1|	-	0.035	14.7	0.1	0.13	12.8	0.0	2.0	2	1	1	3	3	3	0	AAA	domain
AAA_33	PF13671.6	gi|257051993|ref|YP_003129826.1|	-	0.046	13.9	0.0	0.088	13.0	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
NYN_YacP	PF05991.11	gi|257051993|ref|YP_003129826.1|	-	0.052	13.5	0.1	0.12	12.2	0.1	1.6	1	0	0	1	1	1	0	YacP-like	NYN	domain
PRK	PF00485.18	gi|257051993|ref|YP_003129826.1|	-	0.056	13.2	0.0	0.11	12.2	0.0	1.5	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
Adeno_IVa2	PF02456.15	gi|257051993|ref|YP_003129826.1|	-	0.078	11.8	0.0	1.7	7.3	0.0	2.0	2	0	0	2	2	2	0	Adenovirus	IVa2	protein
PPV_E1_C	PF00519.17	gi|257051993|ref|YP_003129826.1|	-	0.22	10.3	0.0	0.31	9.8	0.0	1.1	1	0	0	1	1	1	0	Papillomavirus	helicase
BPD_transp_1	PF00528.22	gi|257051994|ref|YP_003129827.1|	-	9.9e-22	77.6	10.6	9.9e-22	77.6	10.6	5.9	2	2	3	5	5	5	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF3262	PF11660.8	gi|257051994|ref|YP_003129827.1|	-	0.084	13.3	0.4	0.084	13.3	0.4	4.4	5	0	0	5	5	5	0	Protein	of	unknown	function	(DUF3262)
BPD_transp_1	PF00528.22	gi|257051995|ref|YP_003129828.1|	-	1.3e-18	67.4	9.2	1.3e-18	67.4	9.2	3.0	1	1	2	3	3	3	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF5357	PF17310.2	gi|257051995|ref|YP_003129828.1|	-	0.76	8.3	2.7	1.3	7.5	2.7	1.3	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5357)
PBP_like_2	PF12849.7	gi|257051996|ref|YP_003129829.1|	-	6e-23	81.9	2.6	3.6e-22	79.4	2.6	2.1	1	1	0	1	1	1	1	PBP	superfamily	domain
PBP_like	PF12727.7	gi|257051996|ref|YP_003129829.1|	-	1.3e-11	44.0	0.1	2.8e-11	42.9	0.1	1.4	1	1	0	1	1	1	1	PBP	superfamily	domain
TAT_signal	PF10518.9	gi|257051996|ref|YP_003129829.1|	-	0.00015	21.4	0.5	0.00032	20.4	0.5	1.6	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
UCR_Fe-S_N	PF10399.9	gi|257051996|ref|YP_003129829.1|	-	0.083	12.3	1.0	0.15	11.5	1.0	1.4	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
PhoU	PF01895.19	gi|257051997|ref|YP_003129830.1|	-	2.1e-20	73.0	5.8	6.4e-17	61.8	1.1	2.5	2	0	0	2	2	2	2	PhoU	domain
MazE_antitoxin	PF04014.18	gi|257051997|ref|YP_003129830.1|	-	8.5e-10	38.3	0.0	3.5e-09	36.4	0.0	2.1	2	0	0	2	2	2	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
MCPsignal	PF00015.21	gi|257051997|ref|YP_003129830.1|	-	0.022	14.6	0.9	0.33	10.7	0.1	2.4	2	1	0	2	2	2	0	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
Bep_C_terminal	PF17841.1	gi|257051997|ref|YP_003129830.1|	-	0.023	14.9	0.0	0.082	13.1	0.0	1.9	2	0	0	2	2	2	0	BID	domain	of	Bartonella	effector	protein	(Bep)
HTH_10	PF04967.12	gi|257051998|ref|YP_003129831.1|	-	1.4e-18	66.4	0.1	3.1e-18	65.3	0.1	1.6	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|257051998|ref|YP_003129831.1|	-	3.8e-06	26.8	1.1	4.6e-06	26.6	0.3	1.5	2	0	0	2	2	2	1	GAF	and	HTH_10	associated	domain
Sigma70_r4	PF04545.16	gi|257051998|ref|YP_003129831.1|	-	0.053	13.1	0.0	0.12	12.0	0.0	1.6	1	0	0	1	1	1	0	Sigma-70,	region	4
Abhydrolase_6	PF12697.7	gi|257051999|ref|YP_003129832.1|	-	1.2e-19	71.8	10.1	1.4e-19	71.6	10.1	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.20	gi|257051999|ref|YP_003129832.1|	-	5.3e-09	36.1	0.0	1e-08	35.2	0.0	1.5	2	0	0	2	2	2	1	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.8	gi|257051999|ref|YP_003129832.1|	-	6.1e-07	29.0	0.0	1.1e-06	28.1	0.0	1.3	1	0	0	1	1	1	1	Serine	aminopeptidase,	S33
Abhydrolase_8	PF06259.12	gi|257051999|ref|YP_003129832.1|	-	0.00097	18.8	0.1	0.0022	17.7	0.0	1.5	1	1	0	1	1	1	1	Alpha/beta	hydrolase
Thioesterase	PF00975.20	gi|257051999|ref|YP_003129832.1|	-	0.01	15.9	0.0	0.016	15.3	0.0	1.5	1	1	0	1	1	1	0	Thioesterase	domain
Ribosomal_S8e	PF01201.22	gi|257052000|ref|YP_003129833.1|	-	8.7e-31	106.9	2.5	9.8e-31	106.8	2.5	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S8e
Fer4_15	PF13459.6	gi|257052001|ref|YP_003129834.1|	-	5.9e-18	65.4	7.2	6.6e-18	65.2	7.2	1.0	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.6	gi|257052001|ref|YP_003129834.1|	-	7.3e-16	58.5	2.6	8.3e-16	58.3	2.6	1.0	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_19	PF06902.11	gi|257052001|ref|YP_003129834.1|	-	1.7e-06	28.0	0.1	1.8e-06	27.9	0.1	1.1	1	0	0	1	1	1	1	Divergent	4Fe-4S	mono-cluster
Fer4	PF00037.27	gi|257052001|ref|YP_003129834.1|	-	0.00043	20.0	5.5	0.1	12.5	0.4	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|257052001|ref|YP_003129834.1|	-	0.017	15.2	3.0	0.19	11.9	0.3	2.2	2	0	0	2	2	2	0	4Fe-4S	binding	domain
DUF2240	PF09999.9	gi|257052002|ref|YP_003129835.1|	-	5.4e-50	168.8	0.0	6e-50	168.6	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2240)
Phage_fiber_2	PF03406.13	gi|257052003|ref|YP_003129836.1|	-	0.079	12.5	0.3	0.14	11.7	0.3	1.3	1	0	0	1	1	1	0	Phage	tail	fibre	repeat
TGT_C2	PF14810.6	gi|257052003|ref|YP_003129836.1|	-	0.097	12.8	0.0	3.5	7.8	0.0	2.3	2	0	0	2	2	2	0	Patch-forming	domain	C2	of	tRNA-guanine	transglycosylase
DUF21	PF01595.20	gi|257052004|ref|YP_003129837.1|	-	1.3e-45	155.3	2.9	1.8e-45	154.8	2.9	1.2	1	0	0	1	1	1	1	Cyclin	M	transmembrane	N-terminal	domain
CorC_HlyC	PF03471.17	gi|257052004|ref|YP_003129837.1|	-	3.6e-21	74.9	1.0	1.4e-20	73.1	0.3	2.4	2	0	0	2	2	2	1	Transporter	associated	domain
CBS	PF00571.28	gi|257052004|ref|YP_003129837.1|	-	7.4e-13	48.7	1.7	6.3e-07	29.7	0.6	2.5	2	0	0	2	2	2	2	CBS	domain
LapA_dom	PF06305.11	gi|257052004|ref|YP_003129837.1|	-	1.8	8.5	5.6	3.1	7.7	0.3	2.4	2	0	0	2	2	2	0	Lipopolysaccharide	assembly	protein	A	domain
HAD_2	PF13419.6	gi|257052005|ref|YP_003129838.1|	-	9e-24	84.5	0.0	1.1e-23	84.3	0.0	1.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|257052005|ref|YP_003129838.1|	-	1.9e-13	51.2	4.1	1.3e-12	48.5	4.1	1.9	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|257052005|ref|YP_003129838.1|	-	1.1e-09	38.2	1.2	1.7e-09	37.6	0.1	2.0	2	0	0	2	2	2	1	HAD-hyrolase-like
HAD	PF12710.7	gi|257052005|ref|YP_003129838.1|	-	7.2e-07	29.8	0.3	1e-06	29.3	0.3	1.3	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
OMPdecase	PF00215.24	gi|257052006|ref|YP_003129839.1|	-	4.2e-31	108.3	0.0	5.1e-31	108.0	0.0	1.1	1	0	0	1	1	1	1	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
Sensor	PF13796.6	gi|257052007|ref|YP_003129840.1|	-	1e-32	113.5	23.3	2.3e-30	105.8	19.0	1.9	1	1	1	2	2	2	2	Putative	sensor
zf-HIT	PF04438.16	gi|257052008|ref|YP_003129841.1|	-	9.3e-06	25.4	3.4	9.3e-06	25.4	3.4	2.0	2	0	0	2	2	2	1	HIT	zinc	finger
zf-B_box	PF00643.24	gi|257052008|ref|YP_003129841.1|	-	0.0018	18.4	3.4	0.0074	16.4	0.3	2.1	1	1	1	2	2	2	2	B-box	zinc	finger
C1_2	PF03107.16	gi|257052008|ref|YP_003129841.1|	-	0.023	15.0	6.4	0.11	12.9	6.6	1.9	1	1	1	2	2	2	0	C1	domain
DZR	PF12773.7	gi|257052008|ref|YP_003129841.1|	-	0.35	10.9	8.0	3.2	7.9	8.0	2.1	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-AN1	PF01428.16	gi|257052008|ref|YP_003129841.1|	-	1.2	9.4	8.0	1	9.6	5.9	2.0	1	1	0	1	1	1	0	AN1-like	Zinc	finger
zf_UBZ	PF18439.1	gi|257052008|ref|YP_003129841.1|	-	4.2	7.0	7.9	0.45	10.1	0.6	2.7	3	0	0	3	3	3	0	Ubiquitin-Binding	Zinc	Finger
CarS-like	PF01864.17	gi|257052009|ref|YP_003129842.1|	-	1.5e-45	155.4	0.8	1.7e-45	155.1	0.8	1.1	1	0	0	1	1	1	1	CDP-archaeol	synthase
CTP_transf_1	PF01148.20	gi|257052009|ref|YP_003129842.1|	-	0.00017	21.5	1.9	0.00023	21.0	0.1	1.9	1	1	0	1	1	1	1	Cytidylyltransferase	family
CcmD	PF04995.14	gi|257052009|ref|YP_003129842.1|	-	0.11	12.5	0.1	0.11	12.5	0.1	3.1	5	0	0	5	5	5	0	Heme	exporter	protein	D	(CcmD)
Porphobil_deam	PF01379.20	gi|257052010|ref|YP_003129843.1|	-	3.2e-63	213.0	0.7	9.5e-50	168.9	0.2	2.3	2	0	0	2	2	2	2	Porphobilinogen	deaminase,	dipyromethane	cofactor	binding	domain
Porphobil_deamC	PF03900.15	gi|257052010|ref|YP_003129843.1|	-	1.7e-10	41.1	1.3	2.7e-10	40.5	0.1	2.0	2	0	0	2	2	2	1	Porphobilinogen	deaminase,	C-terminal	domain
HEM4	PF02602.15	gi|257052011|ref|YP_003129844.1|	-	1.6e-38	132.4	3.7	1.9e-38	132.1	3.7	1.0	1	0	0	1	1	1	1	Uroporphyrinogen-III	synthase	HemD
DUF1442	PF07279.11	gi|257052011|ref|YP_003129844.1|	-	0.079	12.3	0.0	0.14	11.5	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1442)
Unstab_antitox	PF09720.10	gi|257052011|ref|YP_003129844.1|	-	0.1	12.7	0.3	0.24	11.5	0.3	1.6	1	0	0	1	1	1	0	Putative	addiction	module	component
HATPase_c	PF02518.26	gi|257052012|ref|YP_003129845.1|	-	4e-05	24.1	0.1	7.3e-05	23.2	0.1	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
DUF1440	PF07274.12	gi|257052012|ref|YP_003129845.1|	-	0.0013	19.1	3.0	0.0021	18.4	2.3	1.6	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1440)
HisKA_4TM	PF16926.5	gi|257052012|ref|YP_003129845.1|	-	0.012	15.2	1.9	0.012	15.2	1.9	2.1	2	1	1	3	3	3	0	Archaeal	4TM	region	of	histidine	kinase
HisKA	PF00512.25	gi|257052012|ref|YP_003129845.1|	-	0.039	14.0	3.0	0.041	13.9	0.1	2.4	2	1	1	3	3	3	0	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_5	PF14501.6	gi|257052012|ref|YP_003129845.1|	-	0.23	11.4	0.0	0.5	10.3	0.0	1.5	1	0	0	1	1	1	0	GHKL	domain
Cellulase	PF00150.18	gi|257052013|ref|YP_003129846.1|	-	0.0063	16.0	0.0	0.0085	15.5	0.0	1.2	1	0	0	1	1	1	1	Cellulase	(glycosyl	hydrolase	family	5)
CM_2	PF01817.21	gi|257052013|ref|YP_003129846.1|	-	0.023	15.0	0.3	6.2	7.2	0.1	2.7	2	1	1	3	3	3	0	Chorismate	mutase	type	II
DUF4434	PF14488.6	gi|257052013|ref|YP_003129846.1|	-	0.1	12.6	0.0	0.16	12.0	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4434)
DHHA1	PF02272.19	gi|257052014|ref|YP_003129847.1|	-	4e-18	66.2	1.1	7.1e-18	65.3	0.5	1.7	2	0	0	2	2	2	1	DHHA1	domain
DHH	PF01368.20	gi|257052014|ref|YP_003129847.1|	-	0.037	14.3	0.1	0.067	13.4	0.1	1.5	1	0	0	1	1	1	0	DHH	family
ComA	PF02679.15	gi|257052014|ref|YP_003129847.1|	-	0.064	12.7	0.0	0.11	12.0	0.0	1.4	1	0	0	1	1	1	0	(2R)-phospho-3-sulfolactate	synthase	(ComA)
PALP	PF00291.25	gi|257052015|ref|YP_003129848.1|	-	1e-65	222.1	1.0	1.1e-65	221.9	1.0	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
DUF3798	PF12683.7	gi|257052015|ref|YP_003129848.1|	-	0.087	12.2	0.0	0.18	11.2	0.0	1.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3798)
Cys_Met_Meta_PP	PF01053.20	gi|257052016|ref|YP_003129849.1|	-	4.4e-151	502.8	0.0	5e-151	502.6	0.0	1.0	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
DegT_DnrJ_EryC1	PF01041.17	gi|257052016|ref|YP_003129849.1|	-	4.4e-05	23.0	0.1	0.00012	21.5	0.0	1.6	1	1	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Aminotran_5	PF00266.19	gi|257052016|ref|YP_003129849.1|	-	0.00032	19.8	0.0	0.00046	19.2	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-V
Met_gamma_lyase	PF06838.11	gi|257052016|ref|YP_003129849.1|	-	0.021	13.3	0.0	0.029	12.9	0.0	1.2	1	0	0	1	1	1	0	Methionine	gamma-lyase
SQS_PSY	PF00494.19	gi|257052017|ref|YP_003129850.1|	-	7e-46	156.9	4.1	8.3e-46	156.6	4.1	1.1	1	0	0	1	1	1	1	Squalene/phytoene	synthase
Arg_decarbox_C	PF17944.1	gi|257052017|ref|YP_003129850.1|	-	0.095	13.3	0.0	0.26	11.9	0.0	1.8	1	0	0	1	1	1	0	Arginine	decarboxylase	C-terminal	helical	extension
CheC	PF04509.12	gi|257052018|ref|YP_003129851.1|	-	1.5e-10	40.8	0.1	4.2e-10	39.4	0.1	1.8	1	0	0	1	1	1	1	CheC-like	family
CheX	PF13690.6	gi|257052018|ref|YP_003129851.1|	-	1.7e-07	31.3	0.0	3.1e-07	30.5	0.0	1.5	1	0	0	1	1	1	1	Chemotaxis	phosphatase	CheX
CopD	PF05425.13	gi|257052019|ref|YP_003129852.1|	-	2.3e-07	31.1	7.5	2.3e-07	31.1	7.5	1.8	2	0	0	2	2	2	1	Copper	resistance	protein	D
Ribosomal_S6e	PF01092.19	gi|257052020|ref|YP_003129853.1|	-	2.2e-39	134.3	0.0	2.5e-39	134.1	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S6e
CheF-arch	PF04283.12	gi|257052021|ref|YP_003129854.1|	-	3.4e-68	229.7	0.1	4.5e-68	229.2	0.1	1.2	1	0	0	1	1	1	1	Chemotaxis	signal	transduction	system	protein	F	from	archaea
CheF-arch	PF04283.12	gi|257052022|ref|YP_003129855.1|	-	1.2e-68	231.2	1.2	1.9e-68	230.5	1.2	1.3	1	0	0	1	1	1	1	Chemotaxis	signal	transduction	system	protein	F	from	archaea
bPH_4	PF06713.11	gi|257052022|ref|YP_003129855.1|	-	0.00027	20.9	0.0	0.00081	19.4	0.0	1.7	2	0	0	2	2	2	1	Bacterial	PH	domain
bPH_5	PF10882.8	gi|257052022|ref|YP_003129855.1|	-	0.018	15.1	0.3	5	7.3	0.0	2.9	2	1	1	3	3	3	0	Bacterial	PH	domain
HEAT_2	PF13646.6	gi|257052023|ref|YP_003129856.1|	-	6.3e-63	209.2	51.6	3.7e-20	72.1	2.0	5.9	2	1	6	8	8	8	8	HEAT	repeats
HEAT	PF02985.22	gi|257052023|ref|YP_003129856.1|	-	3.2e-25	86.0	9.6	0.0065	16.6	0.0	10.6	11	0	0	11	11	11	5	HEAT	repeat
HEAT_PBS	PF03130.16	gi|257052023|ref|YP_003129856.1|	-	6.9e-25	85.2	21.8	1.4e-05	25.3	0.9	9.0	10	0	0	10	10	10	6	PBS	lyase	HEAT-like	repeat
HEAT_EZ	PF13513.6	gi|257052023|ref|YP_003129856.1|	-	1.1e-17	64.2	21.2	0.026	15.0	0.0	10.3	9	2	2	11	11	11	7	HEAT-like	repeat
Cnd1	PF12717.7	gi|257052023|ref|YP_003129856.1|	-	2.4e-11	44.0	6.0	0.0064	16.6	0.1	5.7	2	1	4	6	6	6	3	non-SMC	mitotic	condensation	complex	subunit	1
Arm	PF00514.23	gi|257052023|ref|YP_003129856.1|	-	5.3e-11	42.2	0.2	17	5.7	0.0	8.9	10	0	0	10	10	10	0	Armadillo/beta-catenin-like	repeat
Adaptin_N	PF01602.20	gi|257052023|ref|YP_003129856.1|	-	6.4e-07	28.3	0.0	0.013	14.1	0.1	3.9	2	1	1	3	3	3	2	Adaptin	N	terminal	region
ERAP1_C	PF11838.8	gi|257052023|ref|YP_003129856.1|	-	1.2e-06	28.4	1.7	0.0029	17.2	0.1	3.0	1	1	1	2	2	2	2	ERAP1-like	C-terminal	domain
DUF2019	PF09450.10	gi|257052023|ref|YP_003129856.1|	-	0.0099	15.8	0.4	12	5.9	0.0	3.6	2	1	1	3	3	3	1	Domain	of	unknown	function	(DUF2019)
ThylakoidFormat	PF11264.8	gi|257052023|ref|YP_003129856.1|	-	0.024	14.3	0.4	17	5.0	0.0	3.5	3	1	1	4	4	4	0	Thylakoid	formation	protein
Vac14_Fab1_bd	PF12755.7	gi|257052023|ref|YP_003129856.1|	-	0.028	15.0	0.0	1.2e+02	3.3	0.0	4.0	3	1	1	4	4	4	0	Vacuolar	14	Fab1-binding	region
CheR	PF01739.18	gi|257052024|ref|YP_003129857.1|	-	1.3e-47	161.8	0.0	1.6e-47	161.5	0.0	1.1	1	0	0	1	1	1	1	CheR	methyltransferase,	SAM	binding	domain
CheR_N	PF03705.15	gi|257052024|ref|YP_003129857.1|	-	4.4e-05	23.1	4.8	0.00011	21.8	4.8	1.8	1	0	0	1	1	1	1	CheR	methyltransferase,	all-alpha	domain
Methyltransf_31	PF13847.6	gi|257052024|ref|YP_003129857.1|	-	7.7e-05	22.5	0.0	0.00088	19.1	0.0	2.1	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|257052024|ref|YP_003129857.1|	-	0.0023	18.7	0.0	0.036	14.8	0.0	2.3	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|257052024|ref|YP_003129857.1|	-	0.0044	17.7	0.0	0.47	11.2	0.0	2.8	1	1	1	2	2	2	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|257052024|ref|YP_003129857.1|	-	0.006	16.4	0.0	0.0087	15.9	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|257052024|ref|YP_003129857.1|	-	0.12	13.1	0.0	1.2	9.9	0.0	2.4	1	1	0	1	1	1	0	Methyltransferase	domain
Hpt	PF01627.23	gi|257052025|ref|YP_003129858.1|	-	4.1e-20	71.8	0.6	2.3e-19	69.4	0.2	2.6	2	1	0	2	2	2	1	Hpt	domain
HATPase_c	PF02518.26	gi|257052025|ref|YP_003129858.1|	-	6.7e-20	71.7	0.1	2.3e-19	70.0	0.1	2.0	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
CheW	PF01584.19	gi|257052025|ref|YP_003129858.1|	-	8.4e-20	70.8	0.4	8.4e-20	70.8	0.4	2.5	4	0	0	4	4	4	1	CheW-like	domain
P2	PF07194.11	gi|257052025|ref|YP_003129858.1|	-	1.1e-09	38.1	0.0	4.3e-09	36.3	0.0	2.0	1	0	0	1	1	1	1	P2	response	regulator	binding	domain
H-kinase_dim	PF02895.14	gi|257052025|ref|YP_003129858.1|	-	1.1e-05	25.7	3.0	1.1e-05	25.7	3.0	2.0	2	0	0	2	2	2	1	Signal	transducing	histidine	kinase,	homodimeric	domain
HATPase_c_2	PF13581.6	gi|257052025|ref|YP_003129858.1|	-	0.011	15.7	1.8	0.014	15.4	0.1	2.2	2	0	0	2	2	2	0	Histidine	kinase-like	ATPase	domain
HATPase_c_5	PF14501.6	gi|257052025|ref|YP_003129858.1|	-	0.019	14.9	0.2	0.11	12.4	0.0	2.3	2	1	0	2	2	2	0	GHKL	domain
HATPase_c_3	PF13589.6	gi|257052025|ref|YP_003129858.1|	-	0.036	13.9	0.0	0.12	12.2	0.0	1.9	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
KH_5	PF13184.6	gi|257052025|ref|YP_003129858.1|	-	0.086	12.9	0.1	0.45	10.6	0.0	2.2	2	0	0	2	2	2	0	NusA-like	KH	domain
CheB_methylest	PF01339.17	gi|257052026|ref|YP_003129859.1|	-	1.8e-57	193.7	0.4	4.8e-57	192.4	0.1	1.8	2	0	0	2	2	2	1	CheB	methylesterase
Response_reg	PF00072.24	gi|257052026|ref|YP_003129859.1|	-	3.5e-26	91.6	0.2	8.6e-26	90.3	0.2	1.7	1	0	0	1	1	1	1	Response	regulator	receiver	domain
OpuAC	PF04069.12	gi|257052026|ref|YP_003129859.1|	-	0.0086	15.7	0.1	0.53	9.8	0.0	2.4	2	0	0	2	2	2	1	Substrate	binding	domain	of	ABC-type	glycine	betaine	transport	system
Nitro_FeMo-Co	PF02579.17	gi|257052026|ref|YP_003129859.1|	-	0.13	12.6	0.1	1.9	8.9	0.1	2.7	3	0	0	3	3	3	0	Dinitrogenase	iron-molybdenum	cofactor
CheW	PF01584.19	gi|257052027|ref|YP_003129860.1|	-	1.3e-27	96.1	0.4	1.4e-27	96.0	0.4	1.0	1	0	0	1	1	1	1	CheW-like	domain
ATPase	PF06745.13	gi|257052028|ref|YP_003129861.1|	-	4.2e-47	160.4	0.0	4.9e-47	160.2	0.0	1.0	1	0	0	1	1	1	1	KaiC
AAA_25	PF13481.6	gi|257052028|ref|YP_003129861.1|	-	4.9e-07	29.5	0.0	6.6e-07	29.1	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
Rad51	PF08423.11	gi|257052028|ref|YP_003129861.1|	-	0.00015	21.2	0.2	0.00022	20.6	0.2	1.3	1	1	0	1	1	1	1	Rad51
AAA_14	PF13173.6	gi|257052028|ref|YP_003129861.1|	-	0.0064	16.5	0.1	0.014	15.5	0.1	1.8	1	1	0	1	1	1	1	AAA	domain
DUF2075	PF09848.9	gi|257052028|ref|YP_003129861.1|	-	0.0074	15.6	0.0	0.0089	15.3	0.0	1.2	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2075)
DnaB_C	PF03796.15	gi|257052028|ref|YP_003129861.1|	-	0.0082	15.5	0.0	0.011	15.0	0.0	1.3	1	0	0	1	1	1	1	DnaB-like	helicase	C	terminal	domain
AAA_24	PF13479.6	gi|257052028|ref|YP_003129861.1|	-	0.035	13.8	0.0	0.054	13.2	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
HTH_20	PF12840.7	gi|257052029|ref|YP_003129862.1|	-	1.3e-09	37.9	0.1	2.2e-09	37.2	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|257052029|ref|YP_003129862.1|	-	0.00042	19.8	0.0	0.00069	19.1	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.10	gi|257052029|ref|YP_003129862.1|	-	0.0032	17.2	0.0	0.0063	16.3	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_27	PF13463.6	gi|257052029|ref|YP_003129862.1|	-	0.0065	16.9	0.1	0.01	16.3	0.1	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.19	gi|257052029|ref|YP_003129862.1|	-	0.013	15.4	0.0	0.024	14.5	0.0	1.5	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.12	gi|257052029|ref|YP_003129862.1|	-	0.014	15.3	0.0	0.025	14.5	0.0	1.4	1	0	0	1	1	1	0	HTH	domain
MarR_2	PF12802.7	gi|257052029|ref|YP_003129862.1|	-	0.014	15.3	0.1	0.022	14.6	0.1	1.3	1	0	0	1	1	1	0	MarR	family
RDV-p3	PF09231.10	gi|257052029|ref|YP_003129862.1|	-	0.05	11.3	0.2	0.051	11.3	0.2	1.0	1	0	0	1	1	1	0	Rice	dwarf	virus	p3
DUF4131	PF13567.6	gi|257052030|ref|YP_003129863.1|	-	0.49	10.0	3.2	0.59	9.8	3.2	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
DUF202	PF02656.15	gi|257052030|ref|YP_003129863.1|	-	4.1	7.9	9.8	1.7	9.2	0.2	2.3	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF202)
Arch_flagellin	PF01917.16	gi|257052031|ref|YP_003129864.1|	-	6.3e-34	117.5	13.4	7.6e-34	117.3	13.4	1.1	1	0	0	1	1	1	1	Archaebacterial	flagellin
Arch_flagellin	PF01917.16	gi|257052032|ref|YP_003129865.1|	-	4.3e-34	118.1	13.4	4.9e-34	117.9	13.4	1.0	1	0	0	1	1	1	1	Archaebacterial	flagellin
DUF4493	PF14900.6	gi|257052032|ref|YP_003129865.1|	-	0.011	15.6	4.3	0.15	11.9	4.3	2.0	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4493)
PMT_2	PF13231.6	gi|257052035|ref|YP_003129868.1|	-	0.0012	19.0	8.5	0.0012	19.0	8.5	3.3	4	0	0	4	4	4	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
PrgI	PF12666.7	gi|257052035|ref|YP_003129868.1|	-	0.048	14.4	0.8	0.048	14.4	0.8	6.0	5	2	2	7	7	7	0	PrgI	family	protein
Response_reg	PF00072.24	gi|257052036|ref|YP_003129869.1|	-	5.8e-32	110.2	1.2	6.5e-32	110.0	1.2	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
QRPTase_C	PF01729.19	gi|257052036|ref|YP_003129869.1|	-	0.28	11.0	2.8	2.4	7.9	2.4	1.9	1	1	1	2	2	2	0	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
CheC	PF04509.12	gi|257052037|ref|YP_003129870.1|	-	1.4e-25	88.9	0.0	2.1e-11	43.6	0.0	2.4	2	0	0	2	2	2	2	CheC-like	family
CheX	PF13690.6	gi|257052037|ref|YP_003129870.1|	-	8.2e-16	58.0	1.4	4.2e-07	30.1	0.0	2.8	3	0	0	3	3	3	2	Chemotaxis	phosphatase	CheX
CheD	PF03975.13	gi|257052038|ref|YP_003129871.1|	-	1.1e-28	99.5	0.0	1.4e-28	99.1	0.0	1.2	1	0	0	1	1	1	1	CheD	chemotactic	sensory	transduction
Arch_fla_DE	PF04659.13	gi|257052039|ref|YP_003129872.1|	-	1.5e-29	101.7	0.0	3.4e-29	100.6	0.0	1.6	1	0	0	1	1	1	1	Archaeal	flagella	protein
FlaC_arch	PF05377.11	gi|257052039|ref|YP_003129872.1|	-	4.1e-22	78.3	1.5	1e-21	77.1	1.5	1.7	1	0	0	1	1	1	1	Flagella	accessory	protein	C	(FlaC)
ZapB	PF06005.12	gi|257052039|ref|YP_003129872.1|	-	0.0025	18.2	0.3	0.0064	16.9	0.3	1.6	1	0	0	1	1	1	1	Cell	division	protein	ZapB
Trimer_CC	PF08954.11	gi|257052039|ref|YP_003129872.1|	-	0.053	13.1	1.6	0.62	9.7	0.1	2.5	2	0	0	2	2	2	0	Trimerisation	motif
DUF948	PF06103.11	gi|257052039|ref|YP_003129872.1|	-	0.094	13.0	0.2	0.38	11.0	0.2	2.0	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF948)
NPV_P10	PF05531.12	gi|257052039|ref|YP_003129872.1|	-	0.11	13.0	0.3	0.46	11.0	0.3	2.1	2	0	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
bZIP_1	PF00170.21	gi|257052039|ref|YP_003129872.1|	-	0.12	12.5	0.6	0.46	10.6	0.2	1.8	1	1	0	1	1	1	0	bZIP	transcription	factor
DUF1664	PF07889.12	gi|257052039|ref|YP_003129872.1|	-	0.13	12.3	0.2	0.29	11.2	0.2	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
Sec34	PF04136.15	gi|257052039|ref|YP_003129872.1|	-	0.15	11.9	0.0	0.35	10.7	0.0	1.6	1	0	0	1	1	1	0	Sec34-like	family
APG6_N	PF17675.1	gi|257052039|ref|YP_003129872.1|	-	0.75	10.3	0.0	0.75	10.3	0.0	3.1	3	0	0	3	3	3	0	Apg6	coiled-coil	region
LPP	PF04728.13	gi|257052039|ref|YP_003129872.1|	-	7.7	7.0	7.2	0.61	10.5	0.2	2.6	2	0	0	2	2	2	0	Lipoprotein	leucine-zipper
Arch_flagellin	PF01917.16	gi|257052040|ref|YP_003129873.1|	-	4.4e-07	30.2	4.6	5.1e-07	30.0	4.6	1.1	1	0	0	1	1	1	1	Archaebacterial	flagellin
DUF4352	PF11611.8	gi|257052040|ref|YP_003129873.1|	-	0.014	15.7	0.4	0.019	15.3	0.4	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4352)
CARDB	PF07705.11	gi|257052040|ref|YP_003129873.1|	-	0.014	15.6	0.2	0.021	15.1	0.2	1.4	1	0	0	1	1	1	0	CARDB
Arch_flagellin	PF01917.16	gi|257052041|ref|YP_003129874.1|	-	4.1e-24	85.6	3.5	4.5e-24	85.5	3.5	1.0	1	0	0	1	1	1	1	Archaebacterial	flagellin
CARDB	PF07705.11	gi|257052041|ref|YP_003129874.1|	-	0.019	15.2	0.0	0.035	14.4	0.0	1.5	1	1	0	1	1	1	0	CARDB
TPPK_C	PF12555.8	gi|257052041|ref|YP_003129874.1|	-	0.15	12.2	2.2	0.3	11.2	2.2	1.4	1	0	0	1	1	1	0	Thiamine	pyrophosphokinase	C	terminal
ATPase	PF06745.13	gi|257052042|ref|YP_003129875.1|	-	3.3e-14	52.8	0.2	6.8e-14	51.8	0.2	1.5	1	1	0	1	1	1	1	KaiC
AAA_25	PF13481.6	gi|257052042|ref|YP_003129875.1|	-	2.2e-07	30.6	0.0	4.1e-07	29.8	0.0	1.4	1	1	0	1	1	1	1	AAA	domain
NACHT	PF05729.12	gi|257052042|ref|YP_003129875.1|	-	0.00033	20.6	0.0	0.0023	17.9	0.0	2.0	1	1	0	1	1	1	1	NACHT	domain
AAA_22	PF13401.6	gi|257052042|ref|YP_003129875.1|	-	0.00055	20.2	0.0	0.00088	19.6	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
Rad51	PF08423.11	gi|257052042|ref|YP_003129875.1|	-	0.0097	15.2	0.1	0.019	14.3	0.1	1.5	1	1	0	1	1	1	1	Rad51
AAA_16	PF13191.6	gi|257052042|ref|YP_003129875.1|	-	0.015	15.7	0.1	0.034	14.5	0.1	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
ArsA_ATPase	PF02374.15	gi|257052042|ref|YP_003129875.1|	-	0.025	13.7	0.1	0.047	12.9	0.1	1.4	1	1	0	1	1	1	0	Anion-transporting	ATPase
TsaE	PF02367.17	gi|257052042|ref|YP_003129875.1|	-	0.029	14.4	0.0	0.051	13.6	0.0	1.5	1	1	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
MipZ	PF09140.11	gi|257052042|ref|YP_003129875.1|	-	0.045	13.0	0.0	0.072	12.4	0.0	1.3	1	0	0	1	1	1	0	ATPase	MipZ
PAXNEB	PF05625.11	gi|257052042|ref|YP_003129875.1|	-	0.087	12.0	0.0	2.7	7.0	0.1	2.0	2	0	0	2	2	2	0	PAXNEB	protein
FF	PF01846.19	gi|257052042|ref|YP_003129875.1|	-	0.18	12.0	0.1	0.44	10.8	0.1	1.6	1	0	0	1	1	1	0	FF	domain
T2SSE	PF00437.20	gi|257052043|ref|YP_003129876.1|	-	3.2e-43	147.8	0.0	4.4e-43	147.3	0.0	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_16	PF13191.6	gi|257052043|ref|YP_003129876.1|	-	0.0015	19.0	0.0	0.006	17.0	0.0	1.9	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|257052043|ref|YP_003129876.1|	-	0.0067	16.7	0.0	0.021	15.1	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
ABC_tran	PF00005.27	gi|257052043|ref|YP_003129876.1|	-	0.0075	16.8	0.0	0.052	14.1	0.0	2.2	2	0	0	2	2	2	1	ABC	transporter
AAA_7	PF12775.7	gi|257052043|ref|YP_003129876.1|	-	0.015	14.8	0.0	0.025	14.1	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
Dynamin_N	PF00350.23	gi|257052043|ref|YP_003129876.1|	-	0.046	13.8	0.0	0.09	12.8	0.0	1.5	1	0	0	1	1	1	0	Dynamin	family
AIG1	PF04548.16	gi|257052043|ref|YP_003129876.1|	-	0.074	12.4	0.0	0.24	10.7	0.0	1.9	2	0	0	2	2	2	0	AIG1	family
AAA_15	PF13175.6	gi|257052043|ref|YP_003129876.1|	-	0.13	11.9	0.0	0.56	9.9	0.0	1.9	2	0	0	2	2	2	0	AAA	ATPase	domain
FtsK_SpoIIIE	PF01580.18	gi|257052043|ref|YP_003129876.1|	-	0.16	11.3	0.0	0.3	10.4	0.0	1.3	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
AAA_29	PF13555.6	gi|257052043|ref|YP_003129876.1|	-	0.2	11.4	0.0	0.38	10.5	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
T2SSF	PF00482.23	gi|257052044|ref|YP_003129877.1|	-	4.8e-19	68.5	2.1	9.4e-10	38.5	0.3	2.9	2	0	0	2	2	2	2	Type	II	secretion	system	(T2SS),	protein	F
AAA_32	PF13654.6	gi|257052044|ref|YP_003129877.1|	-	0.016	14.0	0.0	0.029	13.2	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
DUF4010	PF13194.6	gi|257052044|ref|YP_003129877.1|	-	0.033	13.9	0.6	0.033	13.9	0.6	3.2	3	1	0	3	3	3	0	Domain	of	unknown	function	(DUF4010)
Bac_export_2	PF01312.19	gi|257052044|ref|YP_003129877.1|	-	5.4	6.1	8.4	1.5	7.9	0.5	2.4	2	0	0	2	2	2	0	FlhB	HrpN	YscU	SpaS	Family
ABC2_membrane_5	PF13346.6	gi|257052046|ref|YP_003129879.1|	-	0.067	12.7	0.1	0.07	12.7	0.1	1.0	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
DHHA1	PF02272.19	gi|257052047|ref|YP_003129880.1|	-	0.044	14.2	0.6	0.12	12.8	0.6	1.8	1	1	0	1	1	1	0	DHHA1	domain
Usp	PF00582.26	gi|257052048|ref|YP_003129881.1|	-	3e-34	118.5	6.1	3.4e-34	118.4	6.1	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
DNA_photolyase	PF00875.18	gi|257052048|ref|YP_003129881.1|	-	0.023	14.7	0.3	0.034	14.1	0.3	1.2	1	0	0	1	1	1	0	DNA	photolyase
GGDEF_2	PF17853.1	gi|257052048|ref|YP_003129881.1|	-	0.081	13.2	4.2	0.1	12.9	3.9	1.3	1	1	0	1	1	1	0	GGDEF-like	domain
Usp	PF00582.26	gi|257052049|ref|YP_003129882.1|	-	1.7e-19	70.7	1.2	2.5e-19	70.2	1.2	1.3	1	1	0	1	1	1	1	Universal	stress	protein	family
Acetyltransf_1	PF00583.25	gi|257052050|ref|YP_003129883.1|	-	5.5e-18	65.3	0.0	1.1e-17	64.4	0.0	1.5	1	1	1	2	2	2	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|257052050|ref|YP_003129883.1|	-	6.7e-10	39.0	0.0	9.5e-10	38.5	0.0	1.3	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|257052050|ref|YP_003129883.1|	-	1.1e-09	38.6	0.0	2.5e-09	37.4	0.0	1.5	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.7	gi|257052050|ref|YP_003129883.1|	-	3e-09	37.7	0.0	2.1e-08	34.9	0.0	1.9	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.7	gi|257052050|ref|YP_003129883.1|	-	0.0002	21.5	0.0	0.00028	21.1	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|257052050|ref|YP_003129883.1|	-	0.00025	20.9	0.0	0.00052	19.9	0.0	1.4	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_9	PF13527.7	gi|257052050|ref|YP_003129883.1|	-	0.015	15.4	0.0	6.4	6.9	0.0	2.1	2	0	0	2	2	2	0	Acetyltransferase	(GNAT)	domain
Usp	PF00582.26	gi|257052051|ref|YP_003129884.1|	-	7.7e-15	55.6	0.1	1e-12	48.8	0.1	2.0	1	1	0	1	1	1	1	Universal	stress	protein	family
baeRF_family10	PF18854.1	gi|257052051|ref|YP_003129884.1|	-	0.053	13.8	0.1	0.13	12.5	0.1	1.8	1	1	0	1	1	1	0	Bacterial	archaeo-eukaryotic	release	factor	family	10
mIF3	PF14877.6	gi|257052051|ref|YP_003129884.1|	-	0.12	12.0	0.0	0.16	11.6	0.0	1.1	1	0	0	1	1	1	0	Mitochondrial	translation	initiation	factor
UPF0547	PF10571.9	gi|257052052|ref|YP_003129885.1|	-	0.091	12.9	0.7	0.18	11.9	0.4	1.6	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Zn-ribbon_8	PF09723.10	gi|257052052|ref|YP_003129885.1|	-	0.13	12.4	0.1	0.35	11.0	0.1	1.7	1	0	0	1	1	1	0	Zinc	ribbon	domain
Amidohydro_1	PF01979.20	gi|257052053|ref|YP_003129886.1|	-	3e-24	86.0	0.0	5.2e-23	81.9	0.0	2.0	1	1	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|257052053|ref|YP_003129886.1|	-	1e-15	58.2	12.5	9.7e-09	35.2	7.7	2.6	2	1	0	2	2	2	2	Amidohydrolase	family
TatD_DNase	PF01026.21	gi|257052053|ref|YP_003129886.1|	-	0.024	14.0	0.1	0.45	9.8	0.1	2.4	1	1	0	1	1	1	0	TatD	related	DNase
Glyco_transf_4	PF13439.6	gi|257052053|ref|YP_003129886.1|	-	0.13	12.3	1.7	0.33	10.9	1.2	1.8	1	1	1	2	2	2	0	Glycosyltransferase	Family	4
Acetyltransf_1	PF00583.25	gi|257052054|ref|YP_003129887.1|	-	4.3e-15	56.0	0.0	5.1e-15	55.7	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|257052054|ref|YP_003129887.1|	-	6.1e-13	49.0	0.0	8.1e-13	48.6	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|257052054|ref|YP_003129887.1|	-	2.3e-11	43.8	0.0	2.7e-11	43.5	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|257052054|ref|YP_003129887.1|	-	1.6e-05	25.0	0.0	0.00021	21.4	0.0	2.0	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.7	gi|257052054|ref|YP_003129887.1|	-	0.00022	21.4	0.0	0.00029	21.0	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
GNAT_acetyltr_2	PF13718.6	gi|257052054|ref|YP_003129887.1|	-	0.0033	16.9	0.0	0.0043	16.5	0.0	1.1	1	0	0	1	1	1	1	GNAT	acetyltransferase	2
Acetyltransf_6	PF13480.7	gi|257052054|ref|YP_003129887.1|	-	0.0047	17.1	0.2	0.0089	16.2	0.2	1.7	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|257052054|ref|YP_003129887.1|	-	0.0078	16.2	0.0	0.011	15.7	0.0	1.2	1	0	0	1	1	1	1	FR47-like	protein
Isochorismatase	PF00857.20	gi|257052055|ref|YP_003129888.1|	-	6.6e-47	159.9	0.1	7.4e-47	159.8	0.1	1.0	1	0	0	1	1	1	1	Isochorismatase	family
Tim54	PF11711.8	gi|257052056|ref|YP_003129889.1|	-	0.79	8.4	4.2	1.4	7.6	4.2	1.3	1	0	0	1	1	1	0	Inner	membrane	protein	import	complex	subunit	Tim54
SAPS	PF04499.15	gi|257052056|ref|YP_003129889.1|	-	0.81	8.4	8.7	1.4	7.6	8.7	1.3	1	0	0	1	1	1	0	SIT4	phosphatase-associated	protein
Nop14	PF04147.12	gi|257052056|ref|YP_003129889.1|	-	5.1	5.2	15.4	7.5	4.6	15.4	1.1	1	0	0	1	1	1	0	Nop14-like	family
SDA1	PF05285.12	gi|257052056|ref|YP_003129889.1|	-	5.5	6.3	16.8	11	5.3	16.8	1.4	1	0	0	1	1	1	0	SDA1
PGF-CTERM	PF18204.1	gi|257052057|ref|YP_003129890.1|	-	0.014	15.3	6.0	0.014	15.3	6.0	1.7	2	0	0	2	2	2	0	PGF-CTERM	motif
Zincin_2	PF10103.9	gi|257052057|ref|YP_003129890.1|	-	0.027	13.8	0.0	0.59	9.3	0.0	2.2	2	0	0	2	2	2	0	Zincin-like	metallopeptidase
Nop14	PF04147.12	gi|257052057|ref|YP_003129890.1|	-	7.7	4.6	9.1	11	4.1	9.1	1.1	1	0	0	1	1	1	0	Nop14-like	family
SDA1	PF05285.12	gi|257052057|ref|YP_003129890.1|	-	9.2	5.6	8.7	15	4.9	8.7	1.3	1	0	0	1	1	1	0	SDA1
PIN	PF01850.21	gi|257052058|ref|YP_003129891.1|	-	0.06	13.9	0.0	0.078	13.5	0.0	1.2	1	0	0	1	1	1	0	PIN	domain
MazE_antitoxin	PF04014.18	gi|257052059|ref|YP_003129892.1|	-	3.8e-11	42.6	0.1	6.3e-11	41.9	0.1	1.4	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
PrlF_antitoxin	PF15937.5	gi|257052059|ref|YP_003129892.1|	-	9.9e-05	22.7	0.0	0.00012	22.4	0.0	1.3	1	1	0	1	1	1	1	prlF	antitoxin	for	toxin	YhaV_toxin
QRPTase_C	PF01729.19	gi|257052060|ref|YP_003129893.1|	-	1.6e-16	60.5	0.0	2.4e-16	60.0	0.0	1.3	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
QRPTase_N	PF02749.16	gi|257052060|ref|YP_003129893.1|	-	0.0026	17.8	0.0	0.0077	16.3	0.0	1.8	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
NAPRTase_N	PF17767.1	gi|257052060|ref|YP_003129893.1|	-	0.13	12.6	0.0	4.5	7.7	0.0	2.3	1	1	1	2	2	2	0	Nicotinate	phosphoribosyltransferase	(NAPRTase)	N-terminal	domain
HisKA_7TM	PF16927.5	gi|257052061|ref|YP_003129894.1|	-	2.6e-53	181.3	20.5	3.5e-53	180.9	20.5	1.2	1	0	0	1	1	1	1	N-terminal	7TM	region	of	histidine	kinase
HATPase_c_2	PF13581.6	gi|257052061|ref|YP_003129894.1|	-	1.7e-12	47.4	0.0	4.9e-12	45.9	0.0	1.8	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HATPase_c	PF02518.26	gi|257052061|ref|YP_003129894.1|	-	4.4e-12	46.5	0.0	1.6e-11	44.7	0.0	2.0	2	1	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_4	PF08448.10	gi|257052061|ref|YP_003129894.1|	-	8.1e-08	32.5	0.2	2.8e-07	30.8	0.2	2.0	1	1	0	1	1	1	1	PAS	fold
PAS	PF00989.25	gi|257052061|ref|YP_003129894.1|	-	0.00011	22.1	0.0	0.00028	20.9	0.0	1.7	1	0	0	1	1	1	1	PAS	fold
HATPase_c_3	PF13589.6	gi|257052061|ref|YP_003129894.1|	-	0.002	18.0	0.0	0.017	14.9	0.0	2.2	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_8	PF13188.7	gi|257052061|ref|YP_003129894.1|	-	0.007	16.4	0.0	0.02	14.9	0.0	1.8	1	0	0	1	1	1	1	PAS	domain
PAS_9	PF13426.7	gi|257052061|ref|YP_003129894.1|	-	0.074	13.3	0.0	0.16	12.2	0.0	1.6	1	0	0	1	1	1	0	PAS	domain
DHDPS	PF00701.22	gi|257052062|ref|YP_003129895.1|	-	8e-92	307.0	0.0	9e-92	306.8	0.0	1.0	1	0	0	1	1	1	1	Dihydrodipicolinate	synthetase	family
ThiG	PF05690.14	gi|257052062|ref|YP_003129895.1|	-	0.014	14.7	0.0	0.024	13.9	0.0	1.3	1	0	0	1	1	1	0	Thiazole	biosynthesis	protein	ThiG
DapB_C	PF05173.14	gi|257052063|ref|YP_003129896.1|	-	3.5e-37	127.1	0.0	4.9e-37	126.6	0.0	1.2	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	C-terminus
DapB_N	PF01113.20	gi|257052063|ref|YP_003129896.1|	-	2.5e-26	92.2	0.7	4.8e-26	91.3	0.7	1.5	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
Sacchrp_dh_NADP	PF03435.18	gi|257052063|ref|YP_003129896.1|	-	0.00012	22.4	0.5	0.00079	19.7	0.5	2.1	1	1	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
Peripla_BP_6	PF13458.6	gi|257052063|ref|YP_003129896.1|	-	0.003	17.3	1.6	0.0056	16.4	1.6	1.5	1	1	0	1	1	1	1	Periplasmic	binding	protein
GFO_IDH_MocA	PF01408.22	gi|257052063|ref|YP_003129896.1|	-	0.014	16.2	0.1	0.027	15.3	0.1	1.4	1	0	0	1	1	1	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Gp_dh_N	PF00044.24	gi|257052063|ref|YP_003129896.1|	-	0.016	15.5	0.1	0.046	14.0	0.1	1.8	2	0	0	2	2	2	0	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
CoA_binding_2	PF13380.6	gi|257052063|ref|YP_003129896.1|	-	0.051	14.1	0.3	0.096	13.2	0.3	1.5	1	1	0	1	1	1	0	CoA	binding	domain
THDPS_N_2	PF14805.6	gi|257052064|ref|YP_003129897.1|	-	1.7e-24	85.8	1.4	2.7e-24	85.1	1.4	1.4	1	0	0	1	1	1	1	Tetrahydrodipicolinate	N-succinyltransferase	N-terminal
Hexapep	PF00132.24	gi|257052064|ref|YP_003129897.1|	-	5.2e-12	45.0	8.6	2.1e-06	27.2	2.7	3.5	3	0	0	3	3	3	3	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|257052064|ref|YP_003129897.1|	-	6.7e-05	22.5	14.2	0.0062	16.3	1.0	3.5	2	1	2	4	4	4	2	Hexapeptide	repeat	of	succinyl-transferase
Unstab_antitox	PF09720.10	gi|257052064|ref|YP_003129897.1|	-	0.12	12.5	2.4	0.27	11.3	2.4	1.6	1	0	0	1	1	1	0	Putative	addiction	module	component
PIN	PF01850.21	gi|257052065|ref|YP_003129898.1|	-	3.1e-09	37.4	3.3	3.9e-09	37.0	3.3	1.1	1	0	0	1	1	1	1	PIN	domain
MazE_antitoxin	PF04014.18	gi|257052066|ref|YP_003129899.1|	-	0.0025	17.7	0.6	0.004	17.0	0.6	1.3	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
RNase_HII	PF01351.18	gi|257052068|ref|YP_003129901.1|	-	3.2e-39	134.8	0.0	3.7e-39	134.6	0.0	1.0	1	0	0	1	1	1	1	Ribonuclease	HII
THUMP	PF02926.17	gi|257052069|ref|YP_003129902.1|	-	2.5e-09	37.4	0.0	4.7e-09	36.5	0.0	1.4	1	0	0	1	1	1	1	THUMP	domain
DnaJ_CXXCXGXG	PF00684.19	gi|257052069|ref|YP_003129902.1|	-	0.012	16.0	0.3	0.012	16.0	0.3	2.7	2	1	0	2	2	2	0	DnaJ	central	domain
Prim-Pol	PF09250.11	gi|257052069|ref|YP_003129902.1|	-	0.064	13.6	0.2	0.13	12.6	0.2	1.5	1	0	0	1	1	1	0	Bifunctional	DNA	primase/polymerase,	N-terminal
Anti-TRAP	PF15777.5	gi|257052069|ref|YP_003129902.1|	-	0.31	11.0	10.0	0.046	13.7	2.3	2.8	3	0	0	3	3	3	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
CheF-arch	PF04283.12	gi|257052070|ref|YP_003129903.1|	-	1e-48	166.0	0.0	1.5e-48	165.5	0.0	1.2	1	0	0	1	1	1	1	Chemotaxis	signal	transduction	system	protein	F	from	archaea
TrmB	PF01978.19	gi|257052070|ref|YP_003129903.1|	-	0.056	13.3	0.3	0.13	12.2	0.3	1.5	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
PASTA	PF03793.19	gi|257052070|ref|YP_003129903.1|	-	0.093	12.6	0.1	0.64	9.9	0.0	2.3	2	0	0	2	2	2	0	PASTA	domain
Glyco_hydro_10	PF00331.20	gi|257052071|ref|YP_003129904.1|	-	1.8e-35	122.6	2.7	3.3e-35	121.8	2.7	1.3	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	10
Dockerin_1	PF00404.18	gi|257052071|ref|YP_003129904.1|	-	8.5e-07	29.1	3.0	3.2e-06	27.2	3.0	2.1	1	0	0	1	1	1	1	Dockerin	type	I	domain
TAT_signal	PF10518.9	gi|257052071|ref|YP_003129904.1|	-	0.00013	21.7	2.0	0.00036	20.3	2.0	1.7	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
CarboxypepD_reg	PF13620.6	gi|257052071|ref|YP_003129904.1|	-	0.00071	19.8	1.0	0.33	11.2	0.0	2.6	2	0	0	2	2	2	2	Carboxypeptidase	regulatory-like	domain
DUF3823	PF12866.7	gi|257052071|ref|YP_003129904.1|	-	0.014	15.7	0.1	0.048	14.0	0.1	1.9	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3823)	N-terminal	domain
EF-hand_6	PF13405.6	gi|257052071|ref|YP_003129904.1|	-	0.47	10.5	2.1	2.6	8.2	0.1	2.9	2	0	0	2	2	2	0	EF-hand	domain
DraK_HK_N	PF18092.1	gi|257052071|ref|YP_003129904.1|	-	0.99	9.9	5.4	0.97	9.9	1.5	3.0	3	0	0	3	3	3	0	DraK	Histidine	Kinase	N-terminal	domain
UPF0242	PF06785.11	gi|257052072|ref|YP_003129905.1|	-	1.4e-05	25.3	28.0	0.00027	21.1	17.7	2.2	1	1	1	2	2	2	2	Uncharacterised	protein	family	(UPF0242)	N-terminus
PGF-CTERM	PF18204.1	gi|257052072|ref|YP_003129905.1|	-	8.6e-05	22.4	7.3	0.00018	21.3	7.3	1.6	1	0	0	1	1	1	1	PGF-CTERM	motif
ATG16	PF08614.11	gi|257052072|ref|YP_003129905.1|	-	0.00011	22.5	35.1	0.016	15.4	5.9	2.6	1	1	1	2	2	2	2	Autophagy	protein	16	(ATG16)
CEP63	PF17045.5	gi|257052072|ref|YP_003129905.1|	-	0.0015	18.5	21.6	0.0025	17.8	21.6	1.3	1	0	0	1	1	1	1	Centrosomal	protein	of	63	kDa
FPP	PF05911.11	gi|257052072|ref|YP_003129905.1|	-	0.0026	16.0	21.6	0.004	15.4	21.6	1.2	1	0	0	1	1	1	1	Filament-like	plant	protein,	long	coiled-coil
DUF4763	PF15960.5	gi|257052072|ref|YP_003129905.1|	-	0.0028	17.0	22.0	0.034	13.5	2.3	2.8	1	1	2	3	3	3	2	Domain	of	unknown	function	(DUF4763)
Exonuc_VII_L	PF02601.15	gi|257052072|ref|YP_003129905.1|	-	0.0073	15.9	10.5	0.014	15.0	10.5	1.4	1	0	0	1	1	1	1	Exonuclease	VII,	large	subunit
AAA_13	PF13166.6	gi|257052072|ref|YP_003129905.1|	-	0.011	14.5	22.7	0.02	13.6	13.0	1.9	1	1	1	2	2	2	0	AAA	domain
Fib_alpha	PF08702.10	gi|257052072|ref|YP_003129905.1|	-	0.011	15.9	22.1	0.06	13.5	12.0	2.3	1	1	0	2	2	2	0	Fibrinogen	alpha/beta	chain	family
Spc7	PF08317.11	gi|257052072|ref|YP_003129905.1|	-	0.012	14.5	32.2	0.13	11.1	19.3	2.2	1	1	1	2	2	2	0	Spc7	kinetochore	protein
OmpH	PF03938.14	gi|257052072|ref|YP_003129905.1|	-	0.014	15.8	25.7	0.017	15.5	14.7	2.3	1	1	1	2	2	2	0	Outer	membrane	protein	(OmpH-like)
CCDC144C	PF14915.6	gi|257052072|ref|YP_003129905.1|	-	0.014	14.5	27.9	0.022	13.9	27.9	1.2	1	0	0	1	1	1	0	CCDC144C	protein	coiled-coil	region
CALCOCO1	PF07888.11	gi|257052072|ref|YP_003129905.1|	-	0.016	14.1	19.8	0.025	13.4	19.8	1.2	1	0	0	1	1	1	0	Calcium	binding	and	coiled-coil	domain	(CALCOCO1)	like
KASH_CCD	PF14662.6	gi|257052072|ref|YP_003129905.1|	-	0.02	14.7	27.9	0.2	11.5	16.5	2.4	1	1	1	2	2	2	0	Coiled-coil	region	of	CCDC155	or	KASH
CENP-F_leu_zip	PF10473.9	gi|257052072|ref|YP_003129905.1|	-	0.022	14.8	34.8	0.019	15.0	20.5	2.3	1	1	1	2	2	2	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
DUF3584	PF12128.8	gi|257052072|ref|YP_003129905.1|	-	0.023	12.2	25.3	0.04	11.4	25.3	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
DUF641	PF04859.12	gi|257052072|ref|YP_003129905.1|	-	0.029	14.7	20.4	0.25	11.7	3.0	3.4	2	1	2	4	4	3	0	Plant	protein	of	unknown	function	(DUF641)
BST2	PF16716.5	gi|257052072|ref|YP_003129905.1|	-	0.035	14.7	28.5	0.97	10.1	5.2	2.6	1	1	1	2	2	2	0	Bone	marrow	stromal	antigen	2
HrpB7	PF09486.10	gi|257052072|ref|YP_003129905.1|	-	0.066	13.6	18.5	4.1	7.8	14.2	2.7	1	1	1	2	2	2	0	Bacterial	type	III	secretion	protein	(HrpB7)
NYD-SP28	PF14772.6	gi|257052072|ref|YP_003129905.1|	-	0.066	13.3	23.7	0.16	12.0	12.8	3.1	1	1	1	2	2	2	0	Sperm	tail
DUF724	PF05266.14	gi|257052072|ref|YP_003129905.1|	-	0.092	12.6	21.2	0.72	9.7	5.6	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF724)
Filament	PF00038.21	gi|257052072|ref|YP_003129905.1|	-	0.15	11.6	28.7	0.66	9.5	14.7	2.3	1	1	1	2	2	2	0	Intermediate	filament	protein
PKcGMP_CC	PF16808.5	gi|257052072|ref|YP_003129905.1|	-	0.15	11.9	6.7	4.2	7.3	0.0	3.7	3	0	0	3	3	3	0	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
FAM76	PF16046.5	gi|257052072|ref|YP_003129905.1|	-	0.21	10.9	17.9	0.6	9.4	2.2	2.3	1	1	1	2	2	2	0	FAM76	protein
Tropomyosin	PF00261.20	gi|257052072|ref|YP_003129905.1|	-	0.27	10.6	29.4	0.25	10.7	15.8	2.2	1	1	1	2	2	2	0	Tropomyosin
ERM	PF00769.19	gi|257052072|ref|YP_003129905.1|	-	0.37	10.6	26.5	0.63	9.8	26.5	1.3	1	0	0	1	1	1	0	Ezrin/radixin/moesin	family
HMMR_N	PF15905.5	gi|257052072|ref|YP_003129905.1|	-	0.41	10.1	31.3	0.51	9.8	17.0	2.1	1	1	1	2	2	2	0	Hyaluronan	mediated	motility	receptor	N-terminal
Fez1	PF06818.15	gi|257052072|ref|YP_003129905.1|	-	0.44	11.0	23.1	1.1	9.7	20.2	2.1	1	1	1	2	2	2	0	Fez1
IFT57	PF10498.9	gi|257052072|ref|YP_003129905.1|	-	0.76	8.7	25.0	0.18	10.7	13.0	2.1	1	1	1	2	2	2	0	Intra-flagellar	transport	protein	57
DUF3552	PF12072.8	gi|257052072|ref|YP_003129905.1|	-	0.83	9.0	27.5	0.16	11.4	4.1	2.7	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3552)
TPR_MLP1_2	PF07926.12	gi|257052072|ref|YP_003129905.1|	-	0.99	9.5	36.3	0.82	9.7	26.1	2.5	1	1	1	2	2	2	0	TPR/MLP1/MLP2-like	protein
DUF4201	PF13870.6	gi|257052072|ref|YP_003129905.1|	-	1.1	8.9	18.8	3.6	7.3	18.7	1.9	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4201)
MAD	PF05557.13	gi|257052072|ref|YP_003129905.1|	-	1.2	7.4	24.9	2.6	6.3	24.9	1.5	1	0	0	1	1	1	0	Mitotic	checkpoint	protein
TMPIT	PF07851.13	gi|257052072|ref|YP_003129905.1|	-	1.2	8.3	21.5	1.1	8.4	8.9	2.2	1	1	1	2	2	2	0	TMPIT-like	protein
Atg14	PF10186.9	gi|257052072|ref|YP_003129905.1|	-	1.2	8.1	20.9	2.5	7.1	8.8	2.2	1	1	1	2	2	2	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
MscS_porin	PF12795.7	gi|257052072|ref|YP_003129905.1|	-	1.8	8.1	42.7	20	4.6	43.1	2.1	1	1	0	1	1	1	0	Mechanosensitive	ion	channel	porin	domain
Lebercilin	PF15619.6	gi|257052072|ref|YP_003129905.1|	-	2.3	7.9	27.5	18	4.9	24.4	2.6	1	1	1	2	2	2	0	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
HAUS-augmin3	PF14932.6	gi|257052072|ref|YP_003129905.1|	-	2.4	7.7	32.0	4.1	6.9	15.3	2.4	1	1	1	2	2	2	0	HAUS	augmin-like	complex	subunit	3
DUF948	PF06103.11	gi|257052072|ref|YP_003129905.1|	-	2.5	8.4	16.7	1.4	9.3	6.5	3.9	1	1	2	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF948)
APG6_N	PF17675.1	gi|257052072|ref|YP_003129905.1|	-	2.5	8.6	38.6	9.9	6.7	20.3	2.4	1	1	1	2	2	2	0	Apg6	coiled-coil	region
DUF4200	PF13863.6	gi|257052072|ref|YP_003129905.1|	-	2.6	8.5	24.2	11	6.4	13.9	2.7	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4200)
PHM7_cyt	PF14703.6	gi|257052072|ref|YP_003129905.1|	-	2.6	8.3	5.5	4.4	7.5	4.0	2.0	1	1	1	2	2	2	0	Cytosolic	domain	of	10TM	putative	phosphate	transporter
V-SNARE	PF05008.15	gi|257052072|ref|YP_003129905.1|	-	2.6	8.5	26.5	5.4	7.5	0.8	3.8	2	2	1	3	3	3	0	Vesicle	transport	v-SNARE	protein	N-terminus
CdvA	PF18822.1	gi|257052072|ref|YP_003129905.1|	-	2.8	7.8	20.0	9.2	6.1	14.2	3.4	1	1	2	3	3	3	0	CdvA-like	coiled-coil	domain
SlyX	PF04102.12	gi|257052072|ref|YP_003129905.1|	-	2.8	8.6	29.4	0.39	11.4	2.3	3.9	1	1	2	3	3	2	0	SlyX
DUF4407	PF14362.6	gi|257052072|ref|YP_003129905.1|	-	2.9	7.2	25.7	1.8	7.8	19.8	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4407)
Prominin	PF05478.11	gi|257052072|ref|YP_003129905.1|	-	3	5.7	15.3	5.1	4.9	15.3	1.3	1	0	0	1	1	1	0	Prominin
Cob_adeno_trans	PF01923.18	gi|257052072|ref|YP_003129905.1|	-	3.1	7.9	14.1	8.8	6.4	10.0	2.3	1	1	1	2	2	2	0	Cobalamin	adenosyltransferase
DHR10	PF18595.1	gi|257052072|ref|YP_003129905.1|	-	3.2	7.8	31.1	12	6.0	3.7	2.8	1	1	1	2	2	2	0	Designed	helical	repeat	protein	10	domain
Pox_A_type_inc	PF04508.12	gi|257052072|ref|YP_003129905.1|	-	3.3	7.7	8.2	16	5.5	0.2	4.3	4	1	0	4	4	4	0	Viral	A-type	inclusion	protein	repeat
DegS	PF05384.11	gi|257052072|ref|YP_003129905.1|	-	4.1	6.9	19.1	3.3	7.2	14.0	2.3	1	1	1	2	2	2	0	Sensor	protein	DegS
SHE3	PF17078.5	gi|257052072|ref|YP_003129905.1|	-	5	6.8	23.5	3.4	7.3	9.7	2.3	1	1	1	2	2	2	0	SWI5-dependent	HO	expression	protein	3
Swi5	PF07061.11	gi|257052072|ref|YP_003129905.1|	-	7.1	6.8	27.2	2.7	8.2	4.0	4.3	2	1	2	4	4	4	0	Swi5
DUF745	PF05335.13	gi|257052072|ref|YP_003129905.1|	-	8.1	6.1	26.6	9.5	5.9	15.6	2.3	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF745)
ADIP	PF11559.8	gi|257052072|ref|YP_003129905.1|	-	8.4	6.5	32.4	4.6	7.3	5.2	3.4	1	1	2	3	3	3	0	Afadin-	and	alpha	-actinin-Binding
MPS2	PF17060.5	gi|257052072|ref|YP_003129905.1|	-	8.6	5.5	16.5	9.2	5.4	6.8	2.7	1	1	1	2	2	2	0	Monopolar	spindle	protein	2
Syntaxin-6_N	PF09177.11	gi|257052072|ref|YP_003129905.1|	-	9	6.9	27.4	7.1	7.3	5.7	3.5	1	1	2	3	3	3	0	Syntaxin	6,	N-terminal
CheF-arch	PF04283.12	gi|257052073|ref|YP_003129906.1|	-	5.4e-59	199.6	1.3	5.4e-59	199.6	1.3	1.7	2	0	0	2	2	2	1	Chemotaxis	signal	transduction	system	protein	F	from	archaea
DUF1080	PF06439.11	gi|257052073|ref|YP_003129906.1|	-	0.023	14.8	0.2	1.6	8.8	0.0	2.1	1	1	1	2	2	2	0	Domain	of	Unknown	Function	(DUF1080)
Ycf4	PF02392.16	gi|257052073|ref|YP_003129906.1|	-	0.074	12.6	0.0	0.16	11.6	0.0	1.5	1	0	0	1	1	1	0	Ycf4
NTP_transferase	PF00483.23	gi|257052074|ref|YP_003129907.1|	-	7e-37	127.3	0.0	8.5e-37	127.1	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|257052074|ref|YP_003129907.1|	-	2.8e-19	70.0	0.7	1.1e-18	68.1	0.1	2.1	2	1	0	2	2	2	1	MobA-like	NTP	transferase	domain
Hexapep	PF00132.24	gi|257052074|ref|YP_003129907.1|	-	2.3e-13	49.3	11.6	1e-07	31.4	4.9	5.1	3	1	1	4	4	4	3	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|257052074|ref|YP_003129907.1|	-	2.2e-05	24.1	15.8	0.0089	15.8	5.6	4.3	2	1	3	5	5	5	4	Hexapeptide	repeat	of	succinyl-transferase
IspD	PF01128.19	gi|257052074|ref|YP_003129907.1|	-	0.0018	18.1	0.0	0.0033	17.2	0.0	1.5	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
DUF1028	PF06267.12	gi|257052074|ref|YP_003129907.1|	-	0.038	13.8	0.0	0.1	12.3	0.0	1.7	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF1028)
NTP_transf_4	PF13562.6	gi|257052074|ref|YP_003129907.1|	-	0.19	12.0	0.1	4	7.6	0.1	2.6	2	1	0	2	2	2	0	Sugar	nucleotidyl	transferase
SIS	PF01380.22	gi|257052075|ref|YP_003129908.1|	-	4.3e-53	178.7	0.3	2.3e-25	89.0	0.0	2.2	2	0	0	2	2	2	2	SIS	domain
GATase_6	PF13522.6	gi|257052075|ref|YP_003129908.1|	-	3.6e-19	69.3	0.0	8.2e-19	68.1	0.0	1.5	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_7	PF13537.6	gi|257052075|ref|YP_003129908.1|	-	2.7e-16	59.6	0.0	4.8e-16	58.8	0.0	1.5	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
SIS_2	PF13580.6	gi|257052075|ref|YP_003129908.1|	-	0.02	14.9	0.2	0.2	11.7	0.0	2.4	2	0	0	2	2	2	0	SIS	domain
GATase_4	PF13230.6	gi|257052075|ref|YP_003129908.1|	-	0.058	12.3	0.0	0.1	11.5	0.0	1.4	1	0	0	1	1	1	0	Glutamine	amidotransferases	class-II
DUF4154	PF13689.6	gi|257052075|ref|YP_003129908.1|	-	0.1	12.8	0.0	0.33	11.2	0.0	1.8	2	0	0	2	2	2	0	YfiR/HmsC-like
DUF4330	PF14221.6	gi|257052077|ref|YP_003129910.1|	-	5.2e-20	72.3	0.4	6.3e-20	72.1	0.4	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4330)
DUF3357	PF11837.8	gi|257052077|ref|YP_003129910.1|	-	0.049	14.1	1.0	0.084	13.3	0.6	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF3357)
Bac_transf	PF02397.16	gi|257052078|ref|YP_003129911.1|	-	3.6e-60	202.7	0.0	5.2e-60	202.2	0.0	1.2	1	0	0	1	1	1	1	Bacterial	sugar	transferase
DUF1970	PF09301.10	gi|257052078|ref|YP_003129911.1|	-	1.1e-07	32.1	0.0	2.7e-07	30.8	0.0	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1970)
OrfB_Zn_ribbon	PF07282.11	gi|257052079|ref|YP_003129912.1|	-	3.4e-24	84.6	0.8	7.4e-24	83.5	0.8	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|257052079|ref|YP_003129912.1|	-	4.7e-07	30.1	0.0	9.3e-07	29.1	0.0	1.5	1	0	0	1	1	1	1	Probable	transposase
DZR	PF12773.7	gi|257052079|ref|YP_003129912.1|	-	0.13	12.3	1.3	0.37	10.9	1.3	1.8	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-piccolo	PF05715.13	gi|257052079|ref|YP_003129912.1|	-	0.14	12.4	0.9	0.35	11.0	0.9	1.6	1	0	0	1	1	1	0	Piccolo	Zn-finger
Rubredoxin_2	PF18073.1	gi|257052079|ref|YP_003129912.1|	-	0.21	11.3	4.1	1.8	8.4	0.3	2.4	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
zinc_ribbon_2	PF13240.6	gi|257052079|ref|YP_003129912.1|	-	0.57	10.0	5.4	2.4	8.0	5.4	2.0	1	1	1	2	2	2	0	zinc-ribbon	domain
Epimerase	PF01370.21	gi|257052080|ref|YP_003129913.1|	-	8.7e-65	218.5	0.1	1e-64	218.3	0.1	1.0	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|257052080|ref|YP_003129913.1|	-	5.7e-60	203.5	0.0	1.8e-59	201.8	0.0	1.7	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
3Beta_HSD	PF01073.19	gi|257052080|ref|YP_003129913.1|	-	2.1e-22	79.4	0.0	2.8e-22	79.0	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.17	gi|257052080|ref|YP_003129913.1|	-	4.6e-17	62.0	0.1	5.9e-17	61.7	0.1	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Polysacc_synt_2	PF02719.15	gi|257052080|ref|YP_003129913.1|	-	2e-15	56.7	0.1	1.6e-14	53.8	0.1	2.2	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.12	gi|257052080|ref|YP_003129913.1|	-	8.2e-11	41.6	0.0	2.5e-07	30.1	0.0	2.7	1	1	0	1	1	1	1	Male	sterility	protein
NAD_binding_10	PF13460.6	gi|257052080|ref|YP_003129913.1|	-	1.7e-09	37.9	0.0	3.7e-09	36.7	0.0	1.5	1	1	0	1	1	1	1	NAD(P)H-binding
NmrA	PF05368.13	gi|257052080|ref|YP_003129913.1|	-	0.0004	20.0	0.2	0.0007	19.2	0.2	1.3	1	0	0	1	1	1	1	NmrA-like	family
KR	PF08659.10	gi|257052080|ref|YP_003129913.1|	-	0.00059	19.8	0.3	0.032	14.1	0.3	2.4	1	1	0	1	1	1	1	KR	domain
adh_short	PF00106.25	gi|257052080|ref|YP_003129913.1|	-	0.0023	17.4	0.2	0.0045	16.5	0.2	1.5	1	1	0	1	1	1	1	short	chain	dehydrogenase
TrkA_N	PF02254.18	gi|257052080|ref|YP_003129913.1|	-	0.0033	17.7	1.1	0.0096	16.2	0.2	2.0	2	0	0	2	2	2	1	TrkA-N	domain
eIF-6	PF01912.18	gi|257052081|ref|YP_003129914.1|	-	4e-73	245.0	0.1	4.7e-73	244.8	0.1	1.0	1	0	0	1	1	1	1	eIF-6	family
Ribosomal_L31e	PF01198.19	gi|257052082|ref|YP_003129915.1|	-	1.3e-08	35.0	0.0	1.6e-08	34.6	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L31e
Ribosomal_L39	PF00832.20	gi|257052083|ref|YP_003129916.1|	-	9.9e-21	73.1	7.1	1.1e-20	72.9	7.1	1.1	1	0	0	1	1	1	1	Ribosomal	L39	protein
Zip	PF02535.22	gi|257052084|ref|YP_003129917.1|	-	7.6e-17	61.5	15.0	2.6e-15	56.5	2.0	3.1	1	1	0	2	2	2	2	ZIP	Zinc	transporter
LigT_PEase	PF02834.16	gi|257052085|ref|YP_003129918.1|	-	3.6e-22	78.4	0.0	1.8e-13	50.5	0.0	2.1	2	0	0	2	2	2	2	LigT	like	Phosphoesterase
2_5_RNA_ligase2	PF13563.6	gi|257052085|ref|YP_003129918.1|	-	1.4e-17	64.0	0.0	1.8e-17	63.6	0.0	1.1	1	0	0	1	1	1	1	2'-5'	RNA	ligase	superfamily
AKAP7_NLS	PF10469.9	gi|257052085|ref|YP_003129918.1|	-	1.4e-06	28.4	0.0	1.7e-06	28.1	0.0	1.1	1	0	0	1	1	1	1	AKAP7	2'5'	RNA	ligase-like	domain
HVSL	PF09749.9	gi|257052085|ref|YP_003129918.1|	-	0.053	13.0	0.0	0.065	12.7	0.0	1.1	1	0	0	1	1	1	0	Uncharacterised	conserved	protein
TPR_1	PF00515.28	gi|257052086|ref|YP_003129919.1|	-	2.4e-24	84.1	7.8	2.3e-08	33.5	0.3	4.9	5	0	0	5	5	5	4	Tetratricopeptide	repeat
TPR_2	PF07719.17	gi|257052086|ref|YP_003129919.1|	-	2.1e-22	77.4	17.6	3.1e-06	26.9	0.8	5.1	5	0	0	5	5	5	5	Tetratricopeptide	repeat
TPR_16	PF13432.6	gi|257052086|ref|YP_003129919.1|	-	3.9e-21	75.4	20.6	3.7e-11	43.5	2.2	3.2	2	1	1	3	3	3	3	Tetratricopeptide	repeat
TPR_8	PF13181.6	gi|257052086|ref|YP_003129919.1|	-	1e-20	72.1	3.8	2e-05	24.4	0.3	5.1	5	0	0	5	5	5	4	Tetratricopeptide	repeat
TPR_14	PF13428.6	gi|257052086|ref|YP_003129919.1|	-	1.7e-14	53.3	25.0	3e-05	24.5	0.3	5.2	1	1	4	5	5	5	4	Tetratricopeptide	repeat
TPR_11	PF13414.6	gi|257052086|ref|YP_003129919.1|	-	2.1e-14	52.9	9.4	6.9e-06	25.6	0.0	4.6	2	1	3	5	5	4	3	TPR	repeat
TPR_12	PF13424.6	gi|257052086|ref|YP_003129919.1|	-	1.2e-13	51.2	21.5	5.5e-08	33.0	5.7	3.6	2	2	2	4	4	4	4	Tetratricopeptide	repeat
TPR_9	PF13371.6	gi|257052086|ref|YP_003129919.1|	-	9.9e-13	48.1	13.3	3.4e-06	27.1	1.0	3.4	1	1	2	3	3	3	3	Tetratricopeptide	repeat
TPR_17	PF13431.6	gi|257052086|ref|YP_003129919.1|	-	2.5e-11	43.1	1.6	0.00011	22.3	0.0	4.5	4	0	0	4	4	4	2	Tetratricopeptide	repeat
TPR_19	PF14559.6	gi|257052086|ref|YP_003129919.1|	-	9.5e-10	38.9	2.4	4.1e-05	24.0	0.6	4.1	2	1	2	4	4	4	4	Tetratricopeptide	repeat
TPR_7	PF13176.6	gi|257052086|ref|YP_003129919.1|	-	6e-09	35.3	13.6	0.059	13.4	0.2	4.7	5	0	0	5	5	5	4	Tetratricopeptide	repeat
TPR_6	PF13174.6	gi|257052086|ref|YP_003129919.1|	-	8e-07	29.3	8.9	0.21	12.3	0.1	4.7	5	0	0	5	5	4	3	Tetratricopeptide	repeat
TPR_4	PF07721.14	gi|257052086|ref|YP_003129919.1|	-	0.00096	19.6	1.2	0.00096	19.6	1.2	5.4	6	0	0	6	6	5	1	Tetratricopeptide	repeat
TPR_10	PF13374.6	gi|257052086|ref|YP_003129919.1|	-	0.001	18.9	25.8	0.0045	16.8	0.5	4.8	5	0	0	5	5	5	2	Tetratricopeptide	repeat
Fis1_TPR_C	PF14853.6	gi|257052086|ref|YP_003129919.1|	-	0.0018	18.3	2.9	2.7	8.1	0.0	3.9	4	0	0	4	4	4	1	Fis1	C-terminal	tetratricopeptide	repeat
ANAPC3	PF12895.7	gi|257052086|ref|YP_003129919.1|	-	0.0037	17.4	1.1	0.025	14.8	0.3	2.5	2	1	0	2	2	2	1	Anaphase-promoting	complex,	cyclosome,	subunit	3
YfiO	PF13525.6	gi|257052086|ref|YP_003129919.1|	-	0.0039	16.9	0.6	0.0085	15.8	0.5	1.5	1	1	0	1	1	1	1	Outer	membrane	lipoprotein
DUF4192	PF13830.6	gi|257052086|ref|YP_003129919.1|	-	0.0042	17.2	4.9	0.0042	17.2	4.9	1.9	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4192)
ANAPC5	PF12862.7	gi|257052086|ref|YP_003129919.1|	-	0.046	13.8	9.3	2.5	8.2	1.4	3.9	1	1	2	3	3	3	0	Anaphase-promoting	complex	subunit	5
PPTA	PF01239.22	gi|257052086|ref|YP_003129919.1|	-	0.087	12.6	0.0	1.6	8.6	0.0	2.4	2	0	0	2	2	2	0	Protein	prenyltransferase	alpha	subunit	repeat
Acetyltransf_11	PF13720.6	gi|257052086|ref|YP_003129919.1|	-	0.39	11.2	1.4	0.81	10.2	0.4	2.0	2	0	0	2	2	2	0	Udp	N-acetylglucosamine	O-acyltransferase;	Domain	2
Virulence_fact	PF13769.6	gi|257052086|ref|YP_003129919.1|	-	4.5	7.6	9.2	14	6.0	0.9	2.4	2	0	0	2	2	2	0	Virulence	factor
DUF424	PF04242.13	gi|257052087|ref|YP_003129920.1|	-	4.1e-29	100.7	0.0	4.7e-29	100.5	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF424)
Lipase_GDSL_3	PF14606.6	gi|257052088|ref|YP_003129921.1|	-	1.2e-24	87.4	0.0	1.6e-24	87.0	0.0	1.1	1	0	0	1	1	1	1	GDSL-like	Lipase/Acylhydrolase	family
Lipase_GDSL_2	PF13472.6	gi|257052088|ref|YP_003129921.1|	-	2.5e-12	47.6	0.3	5.1e-12	46.6	0.3	1.5	1	0	0	1	1	1	1	GDSL-like	Lipase/Acylhydrolase	family
GxDLY	PF14607.6	gi|257052088|ref|YP_003129921.1|	-	0.0055	16.5	0.0	0.011	15.6	0.0	1.4	1	0	0	1	1	1	1	N-terminus	of	Esterase_SGNH_hydro-type
Peptidase_M48	PF01435.18	gi|257052089|ref|YP_003129922.1|	-	5.6e-44	150.3	0.0	1.1e-43	149.3	0.0	1.5	2	0	0	2	2	2	1	Peptidase	family	M48
Peptidase_M56	PF05569.11	gi|257052089|ref|YP_003129922.1|	-	2.8e-08	33.3	0.4	1.4e-06	27.7	0.0	2.2	2	0	0	2	2	2	2	BlaR1	peptidase	M56
SprT-like	PF10263.9	gi|257052089|ref|YP_003129922.1|	-	0.1	12.5	0.0	0.14	12.0	0.0	1.2	1	0	0	1	1	1	0	SprT-like	family
DAO	PF01266.24	gi|257052090|ref|YP_003129923.1|	-	2.1e-11	44.0	3.5	6.8e-06	25.9	0.0	3.0	2	1	1	3	3	3	2	FAD	dependent	oxidoreductase
FAD_oxidored	PF12831.7	gi|257052090|ref|YP_003129923.1|	-	6.8e-09	35.6	0.8	1.4e-08	34.5	0.5	1.5	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
Trp_halogenase	PF04820.14	gi|257052090|ref|YP_003129923.1|	-	3.5e-08	32.7	0.1	0.019	13.8	0.1	3.0	3	0	0	3	3	3	2	Tryptophan	halogenase
FAD_binding_2	PF00890.24	gi|257052090|ref|YP_003129923.1|	-	2.8e-07	30.0	0.1	9.7e-07	28.2	0.0	1.8	1	1	1	2	2	2	1	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|257052090|ref|YP_003129923.1|	-	7.3e-07	28.7	0.2	8.5e-06	25.2	0.1	1.9	1	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.19	gi|257052090|ref|YP_003129923.1|	-	1.2e-06	28.1	0.6	0.0033	16.7	0.0	2.1	2	0	0	2	2	2	2	FAD	binding	domain
Lycopene_cycl	PF05834.12	gi|257052090|ref|YP_003129923.1|	-	2.5e-06	26.8	1.0	3.6e-05	23.0	0.3	2.7	2	1	0	2	2	2	1	Lycopene	cyclase	protein
HI0933_like	PF03486.14	gi|257052090|ref|YP_003129923.1|	-	6.4e-06	25.1	0.0	0.00038	19.3	0.2	2.1	2	0	0	2	2	2	1	HI0933-like	protein
GIDA	PF01134.22	gi|257052090|ref|YP_003129923.1|	-	1.2e-05	24.6	0.0	0.0015	17.7	0.1	2.1	2	0	0	2	2	2	2	Glucose	inhibited	division	protein	A
Thi4	PF01946.17	gi|257052090|ref|YP_003129923.1|	-	1.8e-05	24.1	0.2	0.00016	21.0	0.0	2.2	2	1	0	2	2	2	1	Thi4	family
NAD_binding_8	PF13450.6	gi|257052090|ref|YP_003129923.1|	-	0.0012	19.0	1.5	0.0018	18.4	0.2	2.0	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_3	PF13738.6	gi|257052090|ref|YP_003129923.1|	-	0.0032	16.8	0.0	0.0055	16.0	0.0	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|257052090|ref|YP_003129923.1|	-	0.048	14.2	0.0	0.11	13.1	0.0	1.6	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
SatD	PF16264.5	gi|257052091|ref|YP_003129924.1|	-	5.5e-32	111.1	0.0	7.2e-32	110.7	0.0	1.1	1	0	0	1	1	1	1	SatD	family	(SatD)
HTH_Tnp_4	PF13613.6	gi|257052091|ref|YP_003129924.1|	-	0.0059	16.3	0.0	0.047	13.4	0.0	2.2	2	0	0	2	2	2	1	Helix-turn-helix	of	DDE	superfamily	endonuclease
HTH_23	PF13384.6	gi|257052091|ref|YP_003129924.1|	-	0.016	15.0	0.1	0.034	13.9	0.1	1.5	1	1	0	1	1	1	0	Homeodomain-like	domain
Sigma70_r4	PF04545.16	gi|257052091|ref|YP_003129924.1|	-	0.05	13.1	0.1	0.096	12.2	0.1	1.4	1	0	0	1	1	1	0	Sigma-70,	region	4
LacI	PF00356.21	gi|257052091|ref|YP_003129924.1|	-	0.089	12.6	0.7	0.089	12.6	0.7	1.9	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	lacI	family
Fe_dep_repress	PF01325.19	gi|257052091|ref|YP_003129924.1|	-	0.1	12.8	0.1	0.18	12.1	0.1	1.3	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
SpoIIID	PF12116.8	gi|257052091|ref|YP_003129924.1|	-	0.14	12.3	0.0	0.24	11.5	0.0	1.4	1	0	0	1	1	1	0	Stage	III	sporulation	protein	D
DUF3307	PF11750.8	gi|257052092|ref|YP_003129925.1|	-	1.7e-17	63.7	1.6	1.7e-17	63.7	1.6	1.5	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF3307)
NMD3	PF04981.13	gi|257052093|ref|YP_003129926.1|	-	9.7e-63	211.9	0.0	1.2e-62	211.6	0.0	1.1	1	0	0	1	1	1	1	NMD3	family
Rpr2	PF04032.16	gi|257052093|ref|YP_003129926.1|	-	0.00071	19.8	0.3	0.066	13.5	0.0	2.6	3	0	0	3	3	2	1	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
DZR	PF12773.7	gi|257052093|ref|YP_003129926.1|	-	0.047	13.7	5.3	1.6	8.8	3.6	3.0	2	1	0	2	2	2	0	Double	zinc	ribbon
DUF2703	PF10865.8	gi|257052093|ref|YP_003129926.1|	-	0.049	13.8	0.2	0.15	12.2	0.0	1.9	2	0	0	2	2	1	0	Domain	of	unknown	function	(DUF2703)
eIF-5a	PF01287.20	gi|257052093|ref|YP_003129926.1|	-	0.078	13.1	0.0	0.24	11.5	0.0	1.8	1	0	0	1	1	1	0	Eukaryotic	elongation	factor	5A	hypusine,	DNA-binding	OB	fold
GFA	PF04828.14	gi|257052093|ref|YP_003129926.1|	-	0.099	13.0	2.4	15	6.0	0.0	3.2	3	0	0	3	3	3	0	Glutathione-dependent	formaldehyde-activating	enzyme
FYVE	PF01363.21	gi|257052093|ref|YP_003129926.1|	-	0.21	11.7	3.2	3.8	7.7	2.1	2.6	2	1	0	2	2	2	0	FYVE	zinc	finger
zinc_ribbon_2	PF13240.6	gi|257052093|ref|YP_003129926.1|	-	0.43	10.4	9.2	3.4	7.5	0.1	3.8	4	0	0	4	4	4	0	zinc-ribbon	domain
zf-NADH-PPase	PF09297.11	gi|257052093|ref|YP_003129926.1|	-	0.44	10.3	11.9	0.44	10.2	0.3	3.3	3	0	0	3	3	3	0	NADH	pyrophosphatase	zinc	ribbon	domain
Nudix_N_2	PF14803.6	gi|257052093|ref|YP_003129926.1|	-	1.1	9.2	18.7	1.9	8.5	0.4	4.5	5	0	0	5	5	5	0	Nudix	N-terminal
zf-ribbon_3	PF13248.6	gi|257052093|ref|YP_003129926.1|	-	1.6	8.2	11.2	8.2	6.0	0.2	4.2	4	0	0	4	4	4	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|257052093|ref|YP_003129926.1|	-	2	8.0	12.4	2.6	7.6	1.0	4.0	4	0	0	4	4	4	0	TFIIB	zinc-binding
DUF35_N	PF12172.8	gi|257052093|ref|YP_003129926.1|	-	3.8	7.5	10.4	5.3	7.0	0.2	3.4	3	0	0	3	3	3	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zf_UBZ	PF18439.1	gi|257052093|ref|YP_003129926.1|	-	9.7	5.9	11.0	7	6.3	0.1	3.8	4	0	0	4	4	4	0	Ubiquitin-Binding	Zinc	Finger
Met_10	PF02475.16	gi|257052094|ref|YP_003129927.1|	-	1.9e-53	181.2	0.0	2.7e-53	180.7	0.0	1.2	1	0	0	1	1	1	1	Met-10+	like-protein
Methyltransf_15	PF09445.10	gi|257052094|ref|YP_003129927.1|	-	1.7e-06	27.7	0.0	2.6e-06	27.1	0.0	1.2	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
Methyltransf_25	PF13649.6	gi|257052094|ref|YP_003129927.1|	-	1.9e-05	25.3	0.0	4.6e-05	24.0	0.0	1.7	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|257052094|ref|YP_003129927.1|	-	0.00026	20.8	0.0	0.00047	20.0	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Cons_hypoth95	PF03602.15	gi|257052094|ref|YP_003129927.1|	-	0.00073	19.2	0.0	0.0012	18.5	0.0	1.3	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
MTS	PF05175.14	gi|257052094|ref|YP_003129927.1|	-	0.00086	18.9	0.0	0.0024	17.4	0.0	1.7	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_11	PF08241.12	gi|257052094|ref|YP_003129927.1|	-	0.0016	19.0	0.0	0.0035	18.0	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_24	PF13578.6	gi|257052094|ref|YP_003129927.1|	-	0.0089	17.0	0.3	0.039	15.0	0.1	2.2	2	0	0	2	2	1	1	Methyltransferase	domain
TRM	PF02005.16	gi|257052094|ref|YP_003129927.1|	-	0.017	14.3	0.0	0.023	13.9	0.0	1.1	1	0	0	1	1	1	0	N2,N2-dimethylguanosine	tRNA	methyltransferase
Trm5_N	PF18093.1	gi|257052094|ref|YP_003129927.1|	-	0.023	14.6	0.0	0.042	13.8	0.0	1.4	1	0	0	1	1	1	0	tRNA	methyltransferase	5	N-terminal	domain
Methyltransf_23	PF13489.6	gi|257052094|ref|YP_003129927.1|	-	0.055	13.3	0.0	0.35	10.7	0.0	2.2	2	1	0	2	2	2	0	Methyltransferase	domain
PRMT5	PF05185.16	gi|257052094|ref|YP_003129927.1|	-	0.13	12.1	0.0	0.22	11.4	0.0	1.2	1	0	0	1	1	1	0	PRMT5	arginine-N-methyltransferase
PrmA	PF06325.13	gi|257052094|ref|YP_003129927.1|	-	0.14	11.6	0.1	0.28	10.5	0.0	1.5	2	0	0	2	2	2	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
DNA_methylase	PF00145.17	gi|257052094|ref|YP_003129927.1|	-	0.2	11.0	0.0	0.29	10.4	0.0	1.1	1	0	0	1	1	1	0	C-5	cytosine-specific	DNA	methylase
tRNA_U5-meth_tr	PF05958.11	gi|257052094|ref|YP_003129927.1|	-	0.22	10.5	0.0	0.3	10.0	0.0	1.1	1	0	0	1	1	1	0	tRNA	(Uracil-5-)-methyltransferase
PNP_UDP_1	PF01048.20	gi|257052095|ref|YP_003129928.1|	-	3.4e-48	164.0	1.8	4.1e-48	163.7	1.8	1.0	1	0	0	1	1	1	1	Phosphorylase	superfamily
DUF3060	PF11259.8	gi|257052095|ref|YP_003129928.1|	-	0.1	12.3	1.0	0.15	11.8	0.1	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3060)
Helicase_C_2	PF13307.6	gi|257052096|ref|YP_003129929.1|	-	2.2e-19	70.3	0.0	3.2e-19	69.7	0.0	1.3	1	0	0	1	1	1	1	Helicase	C-terminal	domain
ResIII	PF04851.15	gi|257052096|ref|YP_003129929.1|	-	3.5e-05	23.9	0.0	0.018	15.0	0.0	2.2	2	0	0	2	2	2	2	Type	III	restriction	enzyme,	res	subunit
DEAD_2	PF06733.15	gi|257052096|ref|YP_003129929.1|	-	8.4e-05	22.3	0.0	0.00013	21.7	0.0	1.2	1	0	0	1	1	1	1	DEAD_2
AAA_30	PF13604.6	gi|257052096|ref|YP_003129929.1|	-	0.00058	19.6	0.4	0.33	10.7	0.1	2.3	2	0	0	2	2	2	2	AAA	domain
DEAD	PF00270.29	gi|257052096|ref|YP_003129929.1|	-	0.0011	18.7	0.0	0.29	10.9	0.0	2.3	2	0	0	2	2	2	2	DEAD/DEAH	box	helicase
AAA_22	PF13401.6	gi|257052096|ref|YP_003129929.1|	-	0.0014	18.9	0.0	0.01	16.1	0.0	2.3	2	1	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|257052096|ref|YP_003129929.1|	-	0.0088	16.4	1.0	0.022	15.2	0.0	2.2	3	0	0	3	3	3	1	AAA	ATPase	domain
PhoH	PF02562.16	gi|257052096|ref|YP_003129929.1|	-	0.065	12.7	0.0	0.12	11.8	0.0	1.4	1	0	0	1	1	1	0	PhoH-like	protein
DXP_redisom_C	PF08436.12	gi|257052096|ref|YP_003129929.1|	-	0.094	12.9	0.0	0.2	11.8	0.0	1.5	1	0	0	1	1	1	0	1-deoxy-D-xylulose	5-phosphate	reductoisomerase	C-terminal	domain
Mg_chelatase	PF01078.21	gi|257052096|ref|YP_003129929.1|	-	0.1	11.9	0.0	0.17	11.2	0.0	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA	PF00004.29	gi|257052096|ref|YP_003129929.1|	-	0.19	12.1	0.0	3	8.3	0.0	2.4	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
CxxCxxCC	PF03692.15	gi|257052097|ref|YP_003129930.1|	-	3.6e-05	24.3	3.7	0.00076	20.1	3.7	2.3	1	1	0	1	1	1	1	Putative	zinc-	or	iron-chelating	domain
PGF-CTERM	PF18204.1	gi|257052098|ref|YP_003129931.1|	-	4.8e-05	23.2	3.8	4.8e-05	23.2	3.8	2.1	2	0	0	2	2	2	1	PGF-CTERM	motif
adh_short_C2	PF13561.6	gi|257052100|ref|YP_003129933.1|	-	2.1e-68	230.4	3.3	2.4e-68	230.2	3.3	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|257052100|ref|YP_003129933.1|	-	1.2e-56	191.3	1.4	1.6e-56	190.9	1.4	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|257052100|ref|YP_003129933.1|	-	1.3e-20	74.0	0.5	1.7e-20	73.7	0.5	1.1	1	0	0	1	1	1	1	KR	domain
3HCDH_N	PF02737.18	gi|257052100|ref|YP_003129933.1|	-	0.019	14.9	0.7	0.1	12.5	0.2	2.0	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Epimerase	PF01370.21	gi|257052100|ref|YP_003129933.1|	-	0.043	13.3	0.2	0.085	12.3	0.1	1.5	2	0	0	2	2	2	0	NAD	dependent	epimerase/dehydratase	family
PucR	PF07905.11	gi|257052100|ref|YP_003129933.1|	-	0.1	12.9	0.2	1.1	9.6	0.1	2.1	2	0	0	2	2	2	0	Purine	catabolism	regulatory	protein-like	family
TrmO	PF01980.16	gi|257052101|ref|YP_003129934.1|	-	1.5e-34	118.8	0.0	1.8e-34	118.5	0.0	1.1	1	0	0	1	1	1	1	tRNA-methyltransferase	O
Usp	PF00582.26	gi|257052102|ref|YP_003129935.1|	-	2.9e-16	60.2	1.3	5.3e-16	59.4	1.3	1.4	1	1	0	1	1	1	1	Universal	stress	protein	family
ABC_tran	PF00005.27	gi|257052103|ref|YP_003129936.1|	-	2e-30	106.1	0.0	3.5e-30	105.3	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|257052103|ref|YP_003129936.1|	-	8e-08	32.4	0.3	0.008	16.0	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
RsgA_GTPase	PF03193.16	gi|257052103|ref|YP_003129936.1|	-	0.00022	21.2	0.0	0.00046	20.1	0.0	1.5	1	0	0	1	1	1	1	RsgA	GTPase
AAA_23	PF13476.6	gi|257052103|ref|YP_003129936.1|	-	0.0005	20.6	0.0	0.00079	20.0	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|257052103|ref|YP_003129936.1|	-	0.00053	19.7	0.1	0.001	18.7	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
OB_MalK	PF17912.1	gi|257052103|ref|YP_003129936.1|	-	0.0033	18.2	0.5	0.012	16.4	0.2	2.2	2	0	0	2	2	1	1	MalK	OB	fold	domain
TOBE	PF03459.17	gi|257052103|ref|YP_003129936.1|	-	0.0049	17.1	5.7	0.0081	16.4	0.7	2.7	2	1	0	2	2	2	1	TOBE	domain
SMC_N	PF02463.19	gi|257052103|ref|YP_003129936.1|	-	0.0054	16.2	0.0	0.15	11.5	0.0	2.1	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_33	PF13671.6	gi|257052103|ref|YP_003129936.1|	-	0.011	15.9	0.2	0.13	12.4	0.2	2.3	1	1	0	1	1	1	0	AAA	domain
AAA_30	PF13604.6	gi|257052103|ref|YP_003129936.1|	-	0.017	14.8	0.0	0.041	13.6	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|257052103|ref|YP_003129936.1|	-	0.027	14.9	0.3	0.071	13.5	0.3	1.8	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_22	PF13401.6	gi|257052103|ref|YP_003129936.1|	-	0.065	13.5	0.1	0.18	12.0	0.1	1.7	1	0	0	1	1	1	0	AAA	domain
Dynamin_N	PF00350.23	gi|257052103|ref|YP_003129936.1|	-	0.12	12.4	0.1	0.19	11.7	0.1	1.2	1	0	0	1	1	1	0	Dynamin	family
CysA_C_terminal	PF17850.1	gi|257052103|ref|YP_003129936.1|	-	0.71	10.5	9.4	0.26	11.9	0.4	4.5	5	1	0	5	5	5	0	CysA	C-terminal	regulatory	domain
BPD_transp_1	PF00528.22	gi|257052104|ref|YP_003129937.1|	-	3.1e-19	69.4	12.3	3.1e-19	69.4	12.3	1.9	1	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_11	PF13531.6	gi|257052105|ref|YP_003129938.1|	-	1.7e-35	122.8	2.1	2.1e-35	122.5	2.1	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|257052105|ref|YP_003129938.1|	-	1.7e-09	38.1	0.0	1.4e-08	35.1	0.0	1.9	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.9	gi|257052105|ref|YP_003129938.1|	-	0.028	14.2	5.8	0.12	12.2	5.8	2.1	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
PBP_like_2	PF12849.7	gi|257052105|ref|YP_003129938.1|	-	0.045	13.4	0.1	0.071	12.8	0.1	1.2	1	0	0	1	1	1	0	PBP	superfamily	domain
TOBE	PF03459.17	gi|257052106|ref|YP_003129939.1|	-	2.3e-14	53.4	4.9	2.8e-14	53.2	3.6	1.9	2	0	0	2	2	2	1	TOBE	domain
HTH_1	PF00126.27	gi|257052106|ref|YP_003129939.1|	-	4.9e-10	39.2	1.6	5.3e-10	39.1	0.2	1.8	2	0	0	2	2	2	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
TOBE_2	PF08402.10	gi|257052106|ref|YP_003129939.1|	-	0.0089	16.2	1.6	0.0089	16.2	1.6	2.2	2	0	0	2	2	2	1	TOBE	domain
MutS_V	PF00488.21	gi|257052107|ref|YP_003129940.1|	-	7.6e-10	39.1	0.1	1.3e-09	38.4	0.1	1.3	1	0	0	1	1	1	1	MutS	domain	V
HHH_5	PF14520.6	gi|257052107|ref|YP_003129940.1|	-	4.6e-07	30.3	0.7	4.6e-07	30.3	0.7	3.2	3	0	0	3	3	3	1	Helix-hairpin-helix	domain
HHH	PF00633.23	gi|257052107|ref|YP_003129940.1|	-	0.001	18.8	1.3	0.0048	16.7	0.1	2.7	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
IMS_HHH	PF11798.8	gi|257052107|ref|YP_003129940.1|	-	0.079	13.3	0.0	0.28	11.6	0.0	2.0	1	0	0	1	1	1	0	IMS	family	HHH	motif
SRP54	PF00448.22	gi|257052107|ref|YP_003129940.1|	-	0.14	11.8	0.0	0.24	11.0	0.0	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_21	PF13304.6	gi|257052107|ref|YP_003129940.1|	-	0.21	11.3	0.2	19	5.0	0.0	2.4	2	0	0	2	2	2	0	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
DUF2892	PF11127.8	gi|257052108|ref|YP_003129941.1|	-	4.7e-17	61.8	5.0	1e-16	60.7	5.0	1.5	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF2892)
YtpI	PF14007.6	gi|257052108|ref|YP_003129941.1|	-	0.00068	19.7	1.2	0.00089	19.3	1.2	1.1	1	0	0	1	1	1	1	YtpI-like	protein
DUF202	PF02656.15	gi|257052108|ref|YP_003129941.1|	-	0.44	11.0	7.2	0.6	10.6	7.2	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF202)
PAS_4	PF08448.10	gi|257052109|ref|YP_003129942.1|	-	3.3e-40	136.8	12.9	1.1e-14	54.6	0.6	4.0	4	0	0	4	4	4	3	PAS	fold
PAS_9	PF13426.7	gi|257052109|ref|YP_003129942.1|	-	8e-25	87.1	0.2	1.1e-09	38.4	0.0	3.6	3	0	0	3	3	3	3	PAS	domain
PAS	PF00989.25	gi|257052109|ref|YP_003129942.1|	-	5.1e-23	81.2	0.4	1e-10	41.6	0.1	3.4	3	0	0	3	3	3	3	PAS	fold
HATPase_c	PF02518.26	gi|257052109|ref|YP_003129942.1|	-	4.1e-18	65.9	0.1	1.8e-17	63.8	0.0	2.0	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_8	PF13188.7	gi|257052109|ref|YP_003129942.1|	-	2.7e-15	56.0	0.4	2.1e-06	27.6	0.0	3.8	3	0	0	3	3	3	3	PAS	domain
PAS_3	PF08447.12	gi|257052109|ref|YP_003129942.1|	-	1.5e-13	50.8	0.0	5.2e-08	33.1	0.0	3.5	3	0	0	3	3	3	2	PAS	fold
HisKA	PF00512.25	gi|257052109|ref|YP_003129942.1|	-	2.9e-08	33.6	2.3	7.4e-08	32.3	0.2	2.8	3	0	0	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_2	PF13581.6	gi|257052109|ref|YP_003129942.1|	-	0.0021	18.0	0.0	0.0076	16.2	0.0	2.0	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HATPase_c_5	PF14501.6	gi|257052109|ref|YP_003129942.1|	-	0.016	15.1	0.0	0.058	13.3	0.0	1.9	1	1	0	1	1	1	0	GHKL	domain
Lebercilin	PF15619.6	gi|257052109|ref|YP_003129942.1|	-	0.075	12.7	0.1	0.28	10.8	0.0	1.9	2	0	0	2	2	2	0	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
HATPase_c_3	PF13589.6	gi|257052109|ref|YP_003129942.1|	-	0.091	12.6	0.0	0.28	11.0	0.0	1.8	1	1	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Bac_luciferase	PF00296.20	gi|257052110|ref|YP_003129943.1|	-	6.1e-35	121.1	6.7	7.5e-35	120.9	6.7	1.1	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
DUF746	PF05344.11	gi|257052110|ref|YP_003129943.1|	-	0.071	13.0	0.1	0.23	11.3	0.1	2.0	2	0	0	2	2	2	0	Domain	of	Unknown	Function	(DUF746)
ETF_alpha	PF00766.19	gi|257052110|ref|YP_003129943.1|	-	0.14	12.2	1.4	3	7.9	0.1	2.8	3	0	0	3	3	3	0	Electron	transfer	flavoprotein	FAD-binding	domain
HHA	PF05321.11	gi|257052110|ref|YP_003129943.1|	-	0.22	11.9	0.2	3.9	7.9	0.0	2.3	2	0	0	2	2	2	0	Haemolysin	expression	modulating	protein
tRNA_Me_trans	PF03054.16	gi|257052111|ref|YP_003129944.1|	-	2.8e-10	39.5	0.0	2.4e-06	26.6	0.1	2.4	2	0	0	2	2	2	2	tRNA	methyl	transferase
Asn_synthase	PF00733.21	gi|257052111|ref|YP_003129944.1|	-	1.3e-09	38.2	0.4	2e-09	37.6	0.4	1.3	1	0	0	1	1	1	1	Asparagine	synthase
NAD_synthase	PF02540.17	gi|257052111|ref|YP_003129944.1|	-	3.9e-09	36.0	0.0	7e-09	35.2	0.0	1.4	1	0	0	1	1	1	1	NAD	synthase
QueC	PF06508.13	gi|257052111|ref|YP_003129944.1|	-	4.5e-06	26.3	0.2	2.3e-05	24.0	0.1	2.1	2	1	0	2	2	2	1	Queuosine	biosynthesis	protein	QueC
ATP_bind_3	PF01171.20	gi|257052111|ref|YP_003129944.1|	-	0.00091	19.0	0.3	0.0034	17.2	0.2	2.0	1	1	1	2	2	2	1	PP-loop	family
Arginosuc_synth	PF00764.19	gi|257052111|ref|YP_003129944.1|	-	0.0021	17.4	0.0	0.0032	16.8	0.0	1.2	1	0	0	1	1	1	1	Arginosuccinate	synthase
QueH	PF02677.14	gi|257052111|ref|YP_003129944.1|	-	0.01	15.9	0.4	0.023	14.8	0.1	1.7	2	0	0	2	2	2	0	Epoxyqueuosine	reductase	QueH
HTH_31	PF13560.6	gi|257052111|ref|YP_003129944.1|	-	0.11	12.9	1.6	7	7.1	0.0	3.6	4	0	0	4	4	4	0	Helix-turn-helix	domain
DNA_photolyase	PF00875.18	gi|257052111|ref|YP_003129944.1|	-	0.11	12.5	0.1	0.24	11.4	0.1	1.5	1	0	0	1	1	1	0	DNA	photolyase
ThiI	PF02568.14	gi|257052111|ref|YP_003129944.1|	-	0.2	11.2	0.0	0.38	10.3	0.0	1.5	1	1	0	1	1	1	0	Thiamine	biosynthesis	protein	(ThiI)
MarR_2	PF12802.7	gi|257052114|ref|YP_003129947.1|	-	3.3e-05	23.7	0.0	4.9e-05	23.1	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|257052114|ref|YP_003129947.1|	-	0.0013	18.2	0.0	0.004	16.7	0.0	1.8	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|257052114|ref|YP_003129947.1|	-	0.0021	17.9	0.0	0.0037	17.2	0.0	1.4	1	0	0	1	1	1	1	MarR	family
Fe_dep_repress	PF01325.19	gi|257052114|ref|YP_003129947.1|	-	0.0054	16.9	0.0	0.0084	16.3	0.0	1.3	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_23	PF13384.6	gi|257052114|ref|YP_003129947.1|	-	0.0099	15.7	0.0	0.025	14.4	0.0	1.6	1	0	0	1	1	1	1	Homeodomain-like	domain
TrmB	PF01978.19	gi|257052114|ref|YP_003129947.1|	-	0.012	15.4	0.0	0.021	14.7	0.0	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.7	gi|257052114|ref|YP_003129947.1|	-	0.087	12.9	0.0	0.17	11.9	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|257052114|ref|YP_003129947.1|	-	0.11	12.4	0.0	0.2	11.5	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
TatC	PF00902.18	gi|257052115|ref|YP_003129948.1|	-	8.5e-36	123.7	25.2	1.1e-35	123.3	19.5	2.9	3	0	0	3	3	3	1	Sec-independent	protein	translocase	protein	(TatC)
DHHC	PF01529.20	gi|257052115|ref|YP_003129948.1|	-	0.53	10.4	4.2	1.3	9.1	4.2	1.7	1	0	0	1	1	1	0	DHHC	palmitoyltransferase
TatC	PF00902.18	gi|257052116|ref|YP_003129949.1|	-	2.5e-72	243.0	36.9	1.4e-39	136.1	12.5	2.5	3	0	0	3	3	3	2	Sec-independent	protein	translocase	protein	(TatC)
Peptidase_M50	PF02163.22	gi|257052116|ref|YP_003129949.1|	-	0.17	11.1	1.9	0.5	9.6	0.9	2.1	2	0	0	2	2	2	0	Peptidase	family	M50
PHO4	PF01384.20	gi|257052117|ref|YP_003129950.1|	-	9.4e-36	123.5	33.6	4.2e-35	121.4	33.6	1.9	1	1	0	1	1	1	1	Phosphate	transporter	family
SpoVS	PF04232.12	gi|257052117|ref|YP_003129950.1|	-	0.52	10.1	7.6	0.17	11.6	0.8	3.0	3	1	0	3	3	3	0	Stage	V	sporulation	protein	S	(SpoVS)
DUF677	PF05055.12	gi|257052117|ref|YP_003129950.1|	-	1.5	7.7	3.1	3.8	6.3	3.1	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF677)
Flavodoxin_5	PF12724.7	gi|257052118|ref|YP_003129951.1|	-	2.8e-40	137.9	0.0	3.5e-40	137.5	0.0	1.1	1	0	0	1	1	1	1	Flavodoxin	domain
Flavodoxin_1	PF00258.25	gi|257052118|ref|YP_003129951.1|	-	3.5e-06	27.3	0.0	9.5e-06	25.9	0.0	1.9	1	1	0	1	1	1	1	Flavodoxin
Flavodoxin_3	PF12641.7	gi|257052118|ref|YP_003129951.1|	-	0.0022	17.7	0.0	0.0057	16.4	0.0	1.7	2	0	0	2	2	2	1	Flavodoxin	domain
RHH_1	PF01402.21	gi|257052119|ref|YP_003129952.1|	-	1.9e-06	27.6	1.8	1.6e-05	24.6	0.2	2.1	1	1	1	2	2	2	2	Ribbon-helix-helix	protein,	copG	family
RHH_8	PF17723.1	gi|257052119|ref|YP_003129952.1|	-	0.018	15.2	0.0	0.018	15.2	0.0	1.1	1	0	0	1	1	1	0	Ribbon-Helix-Helix	transcriptional	regulator	family
Vut_1	PF02592.15	gi|257052120|ref|YP_003129953.1|	-	8.6e-49	165.7	5.8	8.6e-49	165.7	5.8	1.4	2	0	0	2	2	2	1	Putative	vitamin	uptake	transporter
UPF0016	PF01169.19	gi|257052120|ref|YP_003129953.1|	-	3	8.3	10.7	0.11	12.8	0.9	3.2	2	1	2	4	4	4	0	Uncharacterized	protein	family	UPF0016
IMP_cyclohyd	PF07826.11	gi|257052121|ref|YP_003129954.1|	-	1.6e-63	213.8	0.0	1.9e-63	213.5	0.0	1.0	1	0	0	1	1	1	1	IMP	cyclohydrolase-like	protein
MDMPI_N	PF11716.8	gi|257052122|ref|YP_003129955.1|	-	1.1	9.9	5.9	1.2	9.9	4.3	2.0	1	1	0	1	1	1	0	Mycothiol	maleylpyruvate	isomerase	N-terminal	domain
HTH_10	PF04967.12	gi|257052124|ref|YP_003129957.1|	-	5.6e-14	51.7	0.0	1e-13	50.9	0.0	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|257052124|ref|YP_003129957.1|	-	6.3e-12	45.6	7.8	6.3e-12	45.6	7.8	1.6	2	0	0	2	2	2	1	GAF	and	HTH_10	associated	domain
Sigma70_r4_2	PF08281.12	gi|257052124|ref|YP_003129957.1|	-	0.013	15.2	0.0	0.026	14.2	0.0	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
Sigma70_r4	PF04545.16	gi|257052124|ref|YP_003129957.1|	-	0.018	14.5	0.0	0.036	13.6	0.0	1.4	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_20	PF12840.7	gi|257052124|ref|YP_003129957.1|	-	0.026	14.6	0.0	0.054	13.6	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_psq	PF05225.16	gi|257052124|ref|YP_003129957.1|	-	0.043	13.6	0.0	0.14	11.9	0.0	1.8	1	1	0	1	1	1	0	helix-turn-helix,	Psq	domain
TusA	PF01206.17	gi|257052124|ref|YP_003129957.1|	-	0.12	12.2	0.0	0.26	11.1	0.0	1.6	1	0	0	1	1	1	0	Sulfurtransferase	TusA
Phage_CI_repr	PF07022.13	gi|257052124|ref|YP_003129957.1|	-	0.16	12.1	0.0	0.36	10.9	0.0	1.5	1	0	0	1	1	1	0	Bacteriophage	CI	repressor	helix-turn-helix	domain
HTH_Tnp_4	PF13613.6	gi|257052124|ref|YP_003129957.1|	-	0.18	11.6	0.0	0.39	10.5	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	of	DDE	superfamily	endonuclease
MafB19-deam	PF14437.6	gi|257052125|ref|YP_003129958.1|	-	1.1e-17	64.1	0.0	1.3e-17	63.9	0.0	1.1	1	0	0	1	1	1	1	MafB19-like	deaminase
dCMP_cyt_deam_1	PF00383.23	gi|257052125|ref|YP_003129958.1|	-	1.2e-17	63.7	0.4	4e-17	61.9	0.1	1.8	2	0	0	2	2	2	1	Cytidine	and	deoxycytidylate	deaminase	zinc-binding	region
Bd3614-deam	PF14439.6	gi|257052125|ref|YP_003129958.1|	-	0.092	12.8	3.0	0.26	11.3	2.9	1.8	1	1	1	2	2	2	0	Bd3614-like	deaminase
XOO_2897-deam	PF14440.6	gi|257052125|ref|YP_003129958.1|	-	1.1	9.4	5.9	6	7.0	2.8	2.6	2	1	1	3	3	3	0	Xanthomonas	XOO_2897-like	deaminase
HNH	PF01844.23	gi|257052126|ref|YP_003129959.1|	-	0.0017	18.5	23.2	0.23	11.7	5.9	3.9	2	2	0	2	2	2	2	HNH	endonuclease
Phage_tail_S	PF05069.13	gi|257052126|ref|YP_003129959.1|	-	0.049	13.5	0.1	0.087	12.7	0.1	1.4	1	0	0	1	1	1	0	Phage	virion	morphogenesis	family
NinF	PF05810.12	gi|257052126|ref|YP_003129959.1|	-	0.073	12.9	3.9	4.5	7.2	0.1	2.8	2	0	0	2	2	2	0	NinF	protein
Jag_N	PF14804.6	gi|257052126|ref|YP_003129959.1|	-	0.11	12.9	0.2	0.24	11.8	0.2	1.6	1	0	0	1	1	1	0	Jag	N-terminus
DUF4120	PF13496.6	gi|257052126|ref|YP_003129959.1|	-	0.14	12.5	1.1	1.2	9.5	0.0	2.7	3	1	0	3	3	3	0	Domain	of	unknown	function	(DUF4120)
Cytochrome_C7	PF14522.6	gi|257052126|ref|YP_003129959.1|	-	1.5	8.9	16.6	7.7	6.6	1.0	2.9	1	1	1	2	2	2	0	Cytochrome	c7	and	related	cytochrome	c
DUF3795	PF12675.7	gi|257052126|ref|YP_003129959.1|	-	2.8	8.4	12.8	2.4	8.6	3.2	3.1	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3795)
RDD	PF06271.12	gi|257052127|ref|YP_003129960.1|	-	1.1e-15	58.1	4.5	1.3e-15	57.8	4.5	1.1	1	0	0	1	1	1	1	RDD	family
MFS_1	PF07690.16	gi|257052129|ref|YP_003129962.1|	-	2.9e-29	102.1	68.9	1.4e-20	73.5	31.5	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.7	gi|257052129|ref|YP_003129962.1|	-	8.5	5.1	23.1	1.9e+03	-2.6	23.1	3.2	1	1	0	1	1	1	0	MFS_1	like	family
Glyco_hydro_3	PF00933.21	gi|257052130|ref|YP_003129963.1|	-	4.5e-76	256.3	0.0	5.8e-76	255.9	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	N	terminal	domain
Glyco_hydro_3_C	PF01915.22	gi|257052130|ref|YP_003129963.1|	-	9.8e-46	156.3	0.0	1.7e-45	155.5	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	C-terminal	domain
Fn3-like	PF14310.6	gi|257052130|ref|YP_003129963.1|	-	1e-22	80.0	0.1	2.4e-22	78.8	0.1	1.7	1	0	0	1	1	1	1	Fibronectin	type	III-like	domain
DUF11	PF01345.18	gi|257052130|ref|YP_003129963.1|	-	0.11	12.8	0.5	0.49	10.7	0.5	2.1	1	1	0	1	1	1	0	Domain	of	unknown	function	DUF11
NTP_transferase	PF00483.23	gi|257052131|ref|YP_003129964.1|	-	7.9e-35	120.6	0.0	9.7e-35	120.3	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|257052131|ref|YP_003129964.1|	-	1.2e-09	38.7	0.0	1.5e-09	38.4	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.19	gi|257052131|ref|YP_003129964.1|	-	0.017	14.8	0.0	0.029	14.1	0.0	1.4	1	0	0	1	1	1	0	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Glyco_hydro_77	PF02446.17	gi|257052132|ref|YP_003129965.1|	-	8.3e-143	476.6	0.0	1e-142	476.3	0.0	1.0	1	0	0	1	1	1	1	4-alpha-glucanotransferase
Glycos_transf_1	PF00534.20	gi|257052133|ref|YP_003129966.1|	-	7.7e-26	90.7	0.0	1.3e-25	90.0	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|257052133|ref|YP_003129966.1|	-	6.3e-22	78.5	0.0	1.1e-21	77.7	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|257052133|ref|YP_003129966.1|	-	5.5e-17	62.3	0.0	9e-17	61.6	0.0	1.4	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|257052133|ref|YP_003129966.1|	-	7.7e-13	49.2	0.1	1.2e-12	48.6	0.1	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_transf_5	PF08323.11	gi|257052133|ref|YP_003129966.1|	-	0.0022	17.7	0.1	0.026	14.2	0.0	2.3	1	1	1	2	2	2	1	Starch	synthase	catalytic	domain
TT_ORF2a	PF08197.11	gi|257052133|ref|YP_003129966.1|	-	0.15	12.1	0.3	0.34	11.0	0.3	1.6	1	0	0	1	1	1	0	pORF2a	truncated	protein
Alpha-amylase	PF00128.24	gi|257052135|ref|YP_003129968.1|	-	4.6e-44	151.4	0.0	7e-41	140.9	0.0	2.7	1	1	0	1	1	1	1	Alpha	amylase,	catalytic	domain
Alpha-amylase_C	PF02806.18	gi|257052135|ref|YP_003129968.1|	-	1.2e-05	25.7	0.0	0.00022	21.6	0.0	2.4	2	0	0	2	2	2	1	Alpha	amylase,	C-terminal	all-beta	domain
DUF3459	PF11941.8	gi|257052135|ref|YP_003129968.1|	-	0.00068	19.9	0.2	0.0028	17.9	0.2	2.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3459)
PKD	PF00801.20	gi|257052135|ref|YP_003129968.1|	-	0.0024	17.7	0.6	0.012	15.4	0.1	2.5	2	0	0	2	2	2	1	PKD	domain
Malt_amylase_C	PF16657.5	gi|257052135|ref|YP_003129968.1|	-	0.0026	17.9	0.0	0.0057	16.8	0.0	1.5	1	0	0	1	1	1	1	Maltogenic	Amylase,	C-terminal	domain
hDGE_amylase	PF14701.6	gi|257052135|ref|YP_003129968.1|	-	0.12	11.4	0.0	1.2	8.2	0.0	2.0	2	0	0	2	2	2	0	Glycogen	debranching	enzyme,	glucanotransferase	domain
Glucodextran_N	PF09137.11	gi|257052136|ref|YP_003129969.1|	-	2.7e-67	227.1	0.1	4e-67	226.5	0.1	1.3	1	0	0	1	1	1	1	Glucodextranase,	domain	N
Glyco_hydro_15	PF00723.21	gi|257052136|ref|YP_003129969.1|	-	1.3e-32	113.2	3.1	1.7e-21	76.6	0.1	4.6	3	2	0	4	4	4	4	Glycosyl	hydrolases	family	15
AAA_16	PF13191.6	gi|257052138|ref|YP_003129971.1|	-	2.8e-10	40.8	0.4	3.9e-09	37.1	0.1	2.6	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|257052138|ref|YP_003129971.1|	-	1.2e-07	32.0	0.0	2.5e-07	31.0	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
Cdc6_C	PF09079.11	gi|257052138|ref|YP_003129971.1|	-	7e-06	25.9	0.1	1.9e-05	24.5	0.1	1.8	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA	PF00004.29	gi|257052138|ref|YP_003129971.1|	-	0.00017	22.0	0.0	0.00048	20.6	0.0	1.8	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_33	PF13671.6	gi|257052138|ref|YP_003129971.1|	-	0.0008	19.6	0.0	0.0017	18.6	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|257052138|ref|YP_003129971.1|	-	0.0055	16.4	0.4	0.035	13.8	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
MarR_2	PF12802.7	gi|257052138|ref|YP_003129971.1|	-	0.0097	15.8	0.0	0.034	14.0	0.0	2.0	1	0	0	1	1	1	1	MarR	family
Rad17	PF03215.15	gi|257052138|ref|YP_003129971.1|	-	0.013	15.5	0.0	0.027	14.4	0.0	1.6	1	1	0	1	1	1	0	Rad17	P-loop	domain
NTPase_1	PF03266.15	gi|257052138|ref|YP_003129971.1|	-	0.014	15.3	0.0	0.035	14.0	0.0	1.6	1	0	0	1	1	1	0	NTPase
AAA_11	PF13086.6	gi|257052138|ref|YP_003129971.1|	-	0.015	15.1	0.0	0.033	14.0	0.0	1.5	2	0	0	2	2	2	0	AAA	domain
AAA_7	PF12775.7	gi|257052138|ref|YP_003129971.1|	-	0.018	14.6	0.0	0.049	13.1	0.0	1.6	2	0	0	2	2	2	0	P-loop	containing	dynein	motor	region
T2SSE	PF00437.20	gi|257052138|ref|YP_003129971.1|	-	0.023	13.8	0.0	0.037	13.1	0.0	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
HTH_36	PF13730.6	gi|257052138|ref|YP_003129971.1|	-	0.023	14.6	0.0	0.049	13.6	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
CbiA	PF01656.23	gi|257052138|ref|YP_003129971.1|	-	0.029	14.4	0.0	0.043	13.9	0.0	1.4	1	1	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_32	PF13654.6	gi|257052138|ref|YP_003129971.1|	-	0.03	13.1	0.1	3.8	6.2	0.1	2.3	2	0	0	2	2	2	0	AAA	domain
HTH_27	PF13463.6	gi|257052138|ref|YP_003129971.1|	-	0.036	14.6	0.1	0.074	13.6	0.1	1.6	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
AAA_14	PF13173.6	gi|257052138|ref|YP_003129971.1|	-	0.038	14.0	0.0	0.17	11.9	0.0	2.0	1	1	0	1	1	1	0	AAA	domain
Sigma54_activat	PF00158.26	gi|257052138|ref|YP_003129971.1|	-	0.042	13.6	0.0	0.082	12.6	0.0	1.4	1	0	0	1	1	1	0	Sigma-54	interaction	domain
AAA_19	PF13245.6	gi|257052138|ref|YP_003129971.1|	-	0.052	13.9	0.0	0.082	13.2	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|257052138|ref|YP_003129971.1|	-	0.058	13.3	0.0	0.098	12.6	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
AAA_18	PF13238.6	gi|257052138|ref|YP_003129971.1|	-	0.058	13.9	0.1	0.16	12.6	0.0	1.9	2	1	0	2	2	1	0	AAA	domain
ATP_bind_1	PF03029.17	gi|257052138|ref|YP_003129971.1|	-	0.072	12.9	0.1	2.7	7.7	0.0	2.2	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
AAA_6	PF12774.7	gi|257052138|ref|YP_003129971.1|	-	0.079	11.9	0.0	0.14	11.1	0.0	1.3	1	0	0	1	1	1	0	Hydrolytic	ATP	binding	site	of	dynein	motor	region
Zeta_toxin	PF06414.12	gi|257052138|ref|YP_003129971.1|	-	0.099	11.9	0.0	0.18	11.1	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
DUF2250	PF10007.9	gi|257052138|ref|YP_003129971.1|	-	0.11	12.6	0.3	0.32	11.1	0.0	1.9	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
Mg_chelatase	PF01078.21	gi|257052138|ref|YP_003129971.1|	-	0.11	11.8	0.0	0.19	11.1	0.0	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
RuvB_N	PF05496.12	gi|257052138|ref|YP_003129971.1|	-	0.16	11.7	0.0	0.37	10.5	0.0	1.6	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
RNA_helicase	PF00910.22	gi|257052138|ref|YP_003129971.1|	-	0.2	12.1	0.0	0.46	10.9	0.0	1.7	1	0	0	1	1	1	0	RNA	helicase
SDF	PF00375.18	gi|257052139|ref|YP_003129972.1|	-	0.0017	17.5	3.3	0.0017	17.5	3.3	1.6	2	0	0	2	2	2	1	Sodium:dicarboxylate	symporter	family
SCFA_trans	PF02667.14	gi|257052139|ref|YP_003129972.1|	-	0.022	13.8	1.1	0.032	13.2	1.1	1.1	1	0	0	1	1	1	0	Short	chain	fatty	acid	transporter
Band_7_C	PF16200.5	gi|257052139|ref|YP_003129972.1|	-	0.067	13.2	0.2	17	5.5	0.0	2.8	2	0	0	2	2	2	0	C-terminal	region	of	band_7
DUF5362	PF17319.2	gi|257052139|ref|YP_003129972.1|	-	6.2	6.7	8.0	1	9.3	0.9	2.8	3	0	0	3	3	3	0	Family	of	unknown	function	(DUF5362)
TrmB	PF01978.19	gi|257052140|ref|YP_003129973.1|	-	1.4e-08	34.5	0.0	2.1e-06	27.5	0.0	2.3	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|257052140|ref|YP_003129973.1|	-	1.3e-06	28.1	0.0	0.056	13.3	0.0	2.5	2	0	0	2	2	2	2	IclR	helix-turn-helix	domain
MarR	PF01047.22	gi|257052140|ref|YP_003129973.1|	-	6.8e-06	25.9	0.0	0.0047	16.8	0.0	2.2	2	0	0	2	2	2	2	MarR	family
HTH_20	PF12840.7	gi|257052140|ref|YP_003129973.1|	-	1e-05	25.5	0.0	0.00071	19.6	0.0	2.4	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_29	PF13551.6	gi|257052140|ref|YP_003129973.1|	-	1.2e-05	25.2	0.0	0.16	12.0	0.0	2.4	2	0	0	2	2	2	2	Winged	helix-turn	helix
HTH_24	PF13412.6	gi|257052140|ref|YP_003129973.1|	-	2.7e-05	23.6	0.0	0.098	12.2	0.0	2.3	2	0	0	2	2	2	2	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|257052140|ref|YP_003129973.1|	-	9e-05	22.3	0.0	0.019	14.8	0.0	2.3	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|257052140|ref|YP_003129973.1|	-	0.00013	21.8	0.1	0.033	14.1	0.0	2.3	2	0	0	2	2	2	1	MarR	family
Rrf2	PF02082.20	gi|257052140|ref|YP_003129973.1|	-	0.00033	21.0	0.0	0.041	14.2	0.0	2.3	2	0	0	2	2	2	1	Transcriptional	regulator
HTH_7	PF02796.15	gi|257052140|ref|YP_003129973.1|	-	0.00054	20.0	0.0	1.4	9.0	0.0	2.5	2	0	0	2	2	2	2	Helix-turn-helix	domain	of	resolvase
HTH_11	PF08279.12	gi|257052140|ref|YP_003129973.1|	-	0.0024	17.8	0.1	0.017	15.1	0.0	2.1	2	0	0	2	2	2	1	HTH	domain
FUR	PF01475.19	gi|257052140|ref|YP_003129973.1|	-	0.003	17.7	0.0	0.0089	16.2	0.0	1.7	2	0	0	2	2	2	1	Ferric	uptake	regulator	family
HTH_36	PF13730.6	gi|257052140|ref|YP_003129973.1|	-	0.0057	16.6	0.0	0.011	15.6	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_27	PF13463.6	gi|257052140|ref|YP_003129973.1|	-	0.0059	17.1	0.7	0.024	15.1	0.0	2.2	3	0	0	3	3	2	1	Winged	helix	DNA-binding	domain
PadR	PF03551.14	gi|257052140|ref|YP_003129973.1|	-	0.0092	15.9	0.1	0.027	14.4	0.0	1.8	2	0	0	2	2	2	1	Transcriptional	regulator	PadR-like	family
HTH_23	PF13384.6	gi|257052140|ref|YP_003129973.1|	-	0.011	15.6	0.0	2.6	7.9	0.0	2.5	2	0	0	2	2	2	0	Homeodomain-like	domain
HTH_DeoR	PF08220.12	gi|257052140|ref|YP_003129973.1|	-	0.015	15.0	0.0	0.11	12.3	0.0	2.1	2	0	0	2	2	2	0	DeoR-like	helix-turn-helix	domain
HTH_17	PF12728.7	gi|257052140|ref|YP_003129973.1|	-	0.016	15.4	0.1	6.1	7.1	0.0	2.5	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_10	PF04967.12	gi|257052140|ref|YP_003129973.1|	-	0.033	14.0	0.1	0.74	9.7	0.1	2.5	2	0	0	2	2	2	0	HTH	DNA	binding	domain
MerR	PF00376.23	gi|257052140|ref|YP_003129973.1|	-	0.036	13.8	0.8	2.8	7.8	0.3	2.9	2	1	0	2	2	2	0	MerR	family	regulatory	protein
HTH_28	PF13518.6	gi|257052140|ref|YP_003129973.1|	-	0.04	14.1	0.0	14	5.9	0.0	2.8	2	1	1	3	3	3	0	Helix-turn-helix	domain
PIN_4	PF13638.6	gi|257052141|ref|YP_003129974.1|	-	0.13	12.5	0.0	0.35	11.1	0.0	1.7	1	1	0	1	1	1	0	PIN	domain
Phage_holin_3_6	PF07332.11	gi|257052142|ref|YP_003129975.1|	-	0.022	14.8	0.7	0.029	14.4	0.7	1.2	1	0	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
SLATT_1	PF18181.1	gi|257052142|ref|YP_003129975.1|	-	0.089	12.7	0.0	0.1	12.5	0.0	1.1	1	0	0	1	1	1	0	SMODS	and	SLOG-associating	2TM	effector	domain	1
DUF2975	PF11188.8	gi|257052142|ref|YP_003129975.1|	-	0.34	10.8	2.8	7.1	6.5	3.3	2.0	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2975)
Tad	PF13400.6	gi|257052142|ref|YP_003129975.1|	-	2.4	8.5	6.6	10	6.5	1.1	2.2	1	1	1	2	2	2	0	Putative	Flp	pilus-assembly	TadE/G-like
DUF1616	PF07760.11	gi|257052143|ref|YP_003129976.1|	-	3.2e-117	391.1	0.8	4e-117	390.8	0.8	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1616)
DUF4870	PF09685.10	gi|257052143|ref|YP_003129976.1|	-	0.039	14.0	0.0	0.039	14.0	0.0	2.3	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4870)
Glycos_transf_2	PF00535.26	gi|257052144|ref|YP_003129977.1|	-	1.7e-22	80.0	0.0	3.5e-22	79.0	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|257052144|ref|YP_003129977.1|	-	1.4e-05	25.1	0.1	2.7e-05	24.2	0.1	1.4	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
DUF374	PF04028.13	gi|257052144|ref|YP_003129977.1|	-	0.033	13.7	0.3	0.18	11.4	0.1	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF374)
FTP	PF07504.13	gi|257052144|ref|YP_003129977.1|	-	0.05	13.4	0.7	1	9.3	0.2	2.8	2	0	0	2	2	2	0	Fungalysin/Thermolysin	Propeptide	Motif
DRTGG	PF07085.12	gi|257052144|ref|YP_003129977.1|	-	0.073	12.9	0.0	0.24	11.2	0.0	1.8	1	0	0	1	1	1	0	DRTGG	domain
Glyco_tranf_2_4	PF13704.6	gi|257052144|ref|YP_003129977.1|	-	0.2	12.2	0.0	0.48	11.0	0.0	1.6	2	0	0	2	2	2	0	Glycosyl	transferase	family	2
DUF373	PF04123.13	gi|257052144|ref|YP_003129977.1|	-	1.7	8.0	7.8	1.1	8.6	1.2	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF373)
Epimerase_2	PF02350.19	gi|257052145|ref|YP_003129978.1|	-	5.7e-113	377.3	0.0	6.5e-113	377.1	0.0	1.0	1	0	0	1	1	1	1	UDP-N-acetylglucosamine	2-epimerase
Glyco_trans_4_4	PF13579.6	gi|257052145|ref|YP_003129978.1|	-	0.012	16.1	0.0	0.059	13.8	0.0	2.3	2	1	0	2	2	2	0	Glycosyl	transferase	4-like	domain
UDPG_MGDP_dh_N	PF03721.14	gi|257052146|ref|YP_003129979.1|	-	4.7e-51	173.0	0.1	7.7e-51	172.3	0.1	1.3	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
UDPG_MGDP_dh	PF00984.19	gi|257052146|ref|YP_003129979.1|	-	6.8e-24	83.9	0.0	1.1e-23	83.2	0.0	1.4	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	central	domain
UDPG_MGDP_dh_C	PF03720.15	gi|257052146|ref|YP_003129979.1|	-	1.4e-20	73.7	0.7	1.5e-19	70.3	0.1	2.9	3	2	0	3	3	3	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
NAD_binding_2	PF03446.15	gi|257052146|ref|YP_003129979.1|	-	3.9e-07	30.4	0.0	8.7e-07	29.2	0.0	1.6	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
ApbA	PF02558.16	gi|257052146|ref|YP_003129979.1|	-	2.1e-05	24.2	0.0	5.3e-05	22.9	0.0	1.8	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
TrkA_N	PF02254.18	gi|257052146|ref|YP_003129979.1|	-	0.00011	22.4	0.3	0.095	13.0	0.1	2.6	2	0	0	2	2	2	2	TrkA-N	domain
2-Hacid_dh_C	PF02826.19	gi|257052146|ref|YP_003129979.1|	-	0.0029	17.0	0.1	0.094	12.1	0.0	2.7	3	0	0	3	3	3	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_11	PF14833.6	gi|257052146|ref|YP_003129979.1|	-	0.0063	16.7	0.0	0.017	15.3	0.0	1.7	1	0	0	1	1	1	1	NAD-binding	of	NADP-dependent	3-hydroxyisobutyrate	dehydrogenase
3HCDH_N	PF02737.18	gi|257052146|ref|YP_003129979.1|	-	0.015	15.2	0.0	0.026	14.4	0.0	1.5	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Bac_rhamnosid_C	PF17390.2	gi|257052146|ref|YP_003129979.1|	-	0.046	13.5	0.0	0.093	12.5	0.0	1.5	1	0	0	1	1	1	0	Bacterial	alpha-L-rhamnosidase	C-terminal	domain
NAD_Gly3P_dh_N	PF01210.23	gi|257052146|ref|YP_003129979.1|	-	0.091	12.7	0.0	0.87	9.6	0.0	2.4	2	0	0	2	2	2	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Pyr_redox	PF00070.27	gi|257052146|ref|YP_003129979.1|	-	0.11	13.1	0.0	0.41	11.2	0.0	2.0	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
F420_oxidored	PF03807.17	gi|257052146|ref|YP_003129979.1|	-	0.12	12.9	0.3	3.5	8.3	0.1	2.8	2	1	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
DUF354	PF04007.12	gi|257052147|ref|YP_003129980.1|	-	3.3e-32	111.9	0.0	4.3e-32	111.5	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF354)
Epimerase_2	PF02350.19	gi|257052147|ref|YP_003129980.1|	-	0.032	13.1	0.0	0.05	12.4	0.0	1.3	1	0	0	1	1	1	0	UDP-N-acetylglucosamine	2-epimerase
CotH	PF08757.11	gi|257052147|ref|YP_003129980.1|	-	0.11	12.1	0.1	0.18	11.3	0.1	1.3	1	0	0	1	1	1	0	CotH	kinase	protein
Glyco_trans_1_4	PF13692.6	gi|257052148|ref|YP_003129981.1|	-	1.7e-09	38.2	0.0	3e-09	37.4	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glycos_transf_1	PF00534.20	gi|257052148|ref|YP_003129981.1|	-	3.3e-08	33.3	0.0	8.7e-08	31.9	0.0	1.5	1	1	1	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|257052148|ref|YP_003129981.1|	-	1.1e-06	28.8	0.0	1.8e-06	28.1	0.0	1.4	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_2	PF13477.6	gi|257052148|ref|YP_003129981.1|	-	4.2e-05	23.6	0.0	0.00026	21.1	0.0	2.0	1	1	0	1	1	1	1	Glycosyl	transferase	4-like
Glyco_trans_4_4	PF13579.6	gi|257052148|ref|YP_003129981.1|	-	0.0013	19.2	0.0	0.0021	18.5	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|257052148|ref|YP_003129981.1|	-	0.11	12.9	0.0	0.3	11.5	0.0	1.8	2	0	0	2	2	2	0	Glycosyl	transferases	group	1
DUF2897	PF11446.8	gi|257052149|ref|YP_003129982.1|	-	3.6	7.5	6.7	2.9	7.8	0.2	3.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2897)
DUF563	PF04577.14	gi|257052151|ref|YP_003129984.1|	-	9.7e-38	130.4	0.0	1.4e-37	129.9	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF563)
DUF1565	PF07602.11	gi|257052152|ref|YP_003129985.1|	-	0.015	14.7	1.0	0.027	13.8	0.3	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1565)
Sulfatase	PF00884.23	gi|257052153|ref|YP_003129986.1|	-	1.5e-30	106.7	0.0	2.2e-30	106.1	0.0	1.3	1	0	0	1	1	1	1	Sulfatase
DUF3584	PF12128.8	gi|257052153|ref|YP_003129986.1|	-	0.018	12.6	0.8	0.026	12.1	0.8	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
Phosphodiest	PF01663.22	gi|257052153|ref|YP_003129986.1|	-	0.05	13.2	1.8	3.7	7.0	1.8	2.5	1	1	0	1	1	1	0	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Polysacc_synt_C	PF14667.6	gi|257052154|ref|YP_003129987.1|	-	1.7e-21	76.8	13.4	1.7e-21	76.8	13.4	3.5	2	1	1	3	3	3	1	Polysaccharide	biosynthesis	C-terminal	domain
Polysacc_synt_3	PF13440.6	gi|257052154|ref|YP_003129987.1|	-	7.1e-17	61.6	3.0	7.1e-17	61.6	3.0	1.8	1	1	1	2	2	2	1	Polysaccharide	biosynthesis	protein
Polysacc_synt	PF01943.17	gi|257052154|ref|YP_003129987.1|	-	9.2e-14	51.5	17.2	9.2e-14	51.5	17.2	3.0	2	2	1	3	3	3	1	Polysaccharide	biosynthesis	protein
MatE	PF01554.18	gi|257052154|ref|YP_003129987.1|	-	8e-12	45.1	1.9	8e-12	45.1	1.9	3.4	3	1	1	4	4	4	1	MatE
DUF5336	PF17270.2	gi|257052154|ref|YP_003129987.1|	-	0.0028	17.3	2.9	0.0028	17.3	2.9	3.0	3	0	0	3	3	3	1	Family	of	unknown	function	(DUF5336)
Sulfatase	PF00884.23	gi|257052155|ref|YP_003129988.1|	-	0.0081	15.6	0.0	0.011	15.2	0.0	1.2	1	0	0	1	1	1	1	Sulfatase
PglZ	PF08665.12	gi|257052155|ref|YP_003129988.1|	-	0.055	13.6	0.1	0.36	10.9	0.0	2.0	2	0	0	2	2	2	0	PglZ	domain
DDE_Tnp_1	PF01609.21	gi|257052156|ref|YP_003129989.1|	-	5.4e-18	65.4	1.6	7.7e-18	64.9	1.6	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_2	PF13586.6	gi|257052156|ref|YP_003129989.1|	-	9e-05	22.8	0.1	0.00027	21.3	0.1	1.9	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_3	PF13612.6	gi|257052156|ref|YP_003129989.1|	-	0.0013	18.8	0.0	0.0023	18.0	0.0	1.4	2	0	0	2	2	2	1	Transposase	DDE	domain
GDP_Man_Dehyd	PF16363.5	gi|257052157|ref|YP_003129990.1|	-	7.1e-69	232.7	0.0	9e-69	232.4	0.0	1.1	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Epimerase	PF01370.21	gi|257052157|ref|YP_003129990.1|	-	7.2e-64	215.5	0.0	8.9e-64	215.2	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.19	gi|257052157|ref|YP_003129990.1|	-	3.1e-28	98.6	0.0	4.2e-28	98.2	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.17	gi|257052157|ref|YP_003129990.1|	-	6.5e-21	74.7	0.0	8.5e-21	74.3	0.0	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Polysacc_synt_2	PF02719.15	gi|257052157|ref|YP_003129990.1|	-	7.3e-18	64.7	0.0	4.9e-17	62.0	0.0	1.9	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_10	PF13460.6	gi|257052157|ref|YP_003129990.1|	-	1.9e-12	47.5	0.1	3.9e-11	43.2	0.1	2.2	1	1	0	1	1	1	1	NAD(P)H-binding
NAD_binding_4	PF07993.12	gi|257052157|ref|YP_003129990.1|	-	1.3e-09	37.6	0.1	1.2e-08	34.5	0.1	2.3	1	1	0	1	1	1	1	Male	sterility	protein
NmrA	PF05368.13	gi|257052157|ref|YP_003129990.1|	-	3.7e-07	29.9	0.0	4.8e-07	29.6	0.0	1.3	1	0	0	1	1	1	1	NmrA-like	family
KR	PF08659.10	gi|257052157|ref|YP_003129990.1|	-	7.4e-07	29.2	0.0	3.3e-06	27.1	0.0	1.9	1	1	0	1	1	1	1	KR	domain
adh_short	PF00106.25	gi|257052157|ref|YP_003129990.1|	-	2.5e-05	23.8	1.2	0.0011	18.4	0.1	2.9	2	1	0	2	2	2	1	short	chain	dehydrogenase
3HCDH_N	PF02737.18	gi|257052157|ref|YP_003129990.1|	-	0.032	14.1	0.0	0.099	12.5	0.0	1.8	1	1	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
TrkA_N	PF02254.18	gi|257052157|ref|YP_003129990.1|	-	0.15	12.3	0.5	1.7	8.9	0.5	2.5	2	1	0	2	2	2	0	TrkA-N	domain
Cdc6_C	PF09079.11	gi|257052158|ref|YP_003129991.1|	-	1.7e-15	56.7	0.0	4.4e-15	55.4	0.0	1.7	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_16	PF13191.6	gi|257052158|ref|YP_003129991.1|	-	4.1e-15	56.6	0.2	2.8e-14	53.8	0.0	2.2	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|257052158|ref|YP_003129991.1|	-	7.3e-09	36.0	0.0	1.9e-08	34.7	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|257052158|ref|YP_003129991.1|	-	0.0012	18.6	0.2	0.0046	16.7	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
AAA	PF00004.29	gi|257052158|ref|YP_003129991.1|	-	0.0013	19.2	0.0	0.0041	17.5	0.0	1.9	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
NACHT	PF05729.12	gi|257052158|ref|YP_003129991.1|	-	0.014	15.3	0.0	0.022	14.7	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
AAA_19	PF13245.6	gi|257052158|ref|YP_003129991.1|	-	0.017	15.4	0.0	0.042	14.2	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
DUF2791	PF10923.8	gi|257052158|ref|YP_003129991.1|	-	0.019	13.8	0.0	0.035	12.9	0.0	1.5	1	0	0	1	1	1	0	P-loop	Domain	of	unknown	function	(DUF2791)
Sigma54_activat	PF00158.26	gi|257052158|ref|YP_003129991.1|	-	0.022	14.5	0.0	0.05	13.3	0.0	1.6	1	0	0	1	1	1	0	Sigma-54	interaction	domain
AAA_18	PF13238.6	gi|257052158|ref|YP_003129991.1|	-	0.023	15.2	0.2	0.31	11.6	0.2	2.4	1	1	0	1	1	1	0	AAA	domain
AAA_assoc_2	PF16193.5	gi|257052158|ref|YP_003129991.1|	-	0.051	13.9	0.1	0.15	12.4	0.1	1.8	1	0	0	1	1	1	0	AAA	C-terminal	domain
AAA_32	PF13654.6	gi|257052158|ref|YP_003129991.1|	-	0.061	12.1	0.6	0.31	9.8	0.3	1.9	2	0	0	2	2	2	0	AAA	domain
AAA_2	PF07724.14	gi|257052158|ref|YP_003129991.1|	-	0.081	13.0	0.0	0.23	11.5	0.0	1.7	2	0	0	2	2	2	0	AAA	domain	(Cdc48	subfamily)
AAA_5	PF07728.14	gi|257052158|ref|YP_003129991.1|	-	0.088	12.8	0.1	0.88	9.6	0.1	2.5	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
DUF815	PF05673.13	gi|257052158|ref|YP_003129991.1|	-	0.12	11.6	0.0	0.2	10.8	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
KAP_NTPase	PF07693.14	gi|257052158|ref|YP_003129991.1|	-	0.18	11.0	1.3	3.7	6.7	0.0	2.2	1	1	1	2	2	2	0	KAP	family	P-loop	domain
AAA_7	PF12775.7	gi|257052158|ref|YP_003129991.1|	-	0.21	11.1	0.0	0.37	10.3	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
TrmB	PF01978.19	gi|257052159|ref|YP_003129992.1|	-	2.6e-06	27.2	0.0	4.1e-06	26.6	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.7	gi|257052159|ref|YP_003129992.1|	-	9.3e-06	25.6	0.0	2.5e-05	24.3	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
Penicillinase_R	PF03965.16	gi|257052159|ref|YP_003129992.1|	-	0.00014	22.2	0.0	0.00022	21.5	0.0	1.3	1	0	0	1	1	1	1	Penicillinase	repressor
MarR_2	PF12802.7	gi|257052159|ref|YP_003129992.1|	-	0.0015	18.4	0.0	0.003	17.4	0.0	1.5	1	0	0	1	1	1	1	MarR	family
DUF4423	PF14394.6	gi|257052159|ref|YP_003129992.1|	-	0.0039	16.9	0.0	0.0057	16.4	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4423)
HTH_29	PF13551.6	gi|257052159|ref|YP_003129992.1|	-	0.0039	17.2	0.0	0.011	15.8	0.0	1.8	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_11	PF08279.12	gi|257052159|ref|YP_003129992.1|	-	0.0093	15.9	0.0	0.015	15.2	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
HTH_27	PF13463.6	gi|257052159|ref|YP_003129992.1|	-	0.011	16.2	0.0	0.023	15.2	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_17	PF12728.7	gi|257052159|ref|YP_003129992.1|	-	0.016	15.4	0.2	1.3	9.2	0.0	2.7	2	1	0	2	2	2	0	Helix-turn-helix	domain
HTH_43	PF09904.9	gi|257052159|ref|YP_003129992.1|	-	0.037	14.0	0.0	0.073	13.0	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_IclR	PF09339.10	gi|257052159|ref|YP_003129992.1|	-	0.04	13.7	0.0	0.093	12.5	0.0	1.6	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_5	PF01022.20	gi|257052159|ref|YP_003129992.1|	-	0.048	13.5	0.1	0.13	12.2	0.0	1.7	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|257052160|ref|YP_003129993.1|	-	0.00013	22.0	0.0	0.00022	21.2	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|257052160|ref|YP_003129993.1|	-	0.0004	20.3	0.0	0.00055	19.9	0.0	1.3	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_11	PF08279.12	gi|257052160|ref|YP_003129993.1|	-	0.0011	18.9	0.0	0.0017	18.3	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
MarR_2	PF12802.7	gi|257052160|ref|YP_003129993.1|	-	0.0041	17.0	0.0	0.0068	16.3	0.0	1.4	1	0	0	1	1	1	1	MarR	family
Phage_CI_repr	PF07022.13	gi|257052160|ref|YP_003129993.1|	-	0.018	15.1	0.0	0.024	14.7	0.0	1.3	1	0	0	1	1	1	0	Bacteriophage	CI	repressor	helix-turn-helix	domain
DUF1415	PF07209.12	gi|257052160|ref|YP_003129993.1|	-	0.035	13.8	0.0	0.037	13.8	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1415)
HTH_5	PF01022.20	gi|257052160|ref|YP_003129993.1|	-	0.04	13.8	0.0	0.08	12.8	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_IclR	PF09339.10	gi|257052160|ref|YP_003129993.1|	-	0.049	13.4	0.0	0.084	12.7	0.0	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_24	PF13412.6	gi|257052160|ref|YP_003129993.1|	-	0.057	13.0	0.0	0.098	12.2	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
ATPase_2	PF01637.18	gi|257052162|ref|YP_003129995.1|	-	1.4e-16	61.1	0.0	1.2e-14	54.9	0.0	2.2	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
DUF234	PF03008.14	gi|257052162|ref|YP_003129995.1|	-	7.3e-14	52.0	0.0	1.6e-13	51.0	0.0	1.5	1	0	0	1	1	1	1	Archaea	bacterial	proteins	of	unknown	function
AAA_14	PF13173.6	gi|257052162|ref|YP_003129995.1|	-	1e-05	25.6	0.0	1.7e-05	24.9	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|257052162|ref|YP_003129995.1|	-	4.4e-05	23.9	0.1	0.00014	22.3	0.1	1.9	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|257052162|ref|YP_003129995.1|	-	0.024	14.9	0.0	0.048	13.9	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
DUF58	PF01882.18	gi|257052164|ref|YP_003129997.1|	-	3.8e-21	75.2	0.2	1.2e-20	73.5	0.0	2.0	2	0	0	2	2	2	1	Protein	of	unknown	function	DUF58
VWA_2	PF13519.6	gi|257052164|ref|YP_003129997.1|	-	0.0003	21.4	0.4	0.0051	17.4	0.2	2.5	2	0	0	2	2	2	1	von	Willebrand	factor	type	A	domain
Orbi_NS3	PF01616.16	gi|257052165|ref|YP_003129998.1|	-	0.091	12.5	1.8	0.42	10.3	0.4	2.0	2	0	0	2	2	2	0	Orbivirus	NS3
YdjM	PF04307.14	gi|257052167|ref|YP_003130000.1|	-	1.3e-08	34.3	8.6	2.6e-08	33.4	8.6	1.5	1	1	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
Acyl_transf_3	PF01757.22	gi|257052168|ref|YP_003130001.1|	-	0.2	10.7	8.2	0.27	10.3	8.2	1.3	1	1	0	1	1	1	0	Acyltransferase	family
DUF4350	PF14258.6	gi|257052169|ref|YP_003130002.1|	-	2.5e-05	24.6	0.4	8e-05	23.0	0.4	1.9	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4350)
ABC_transp_aux	PF09822.9	gi|257052169|ref|YP_003130002.1|	-	0.026	14.0	0.0	0.045	13.2	0.0	1.3	1	0	0	1	1	1	0	ABC-type	uncharacterized	transport	system
TACC_C	PF05010.14	gi|257052170|ref|YP_003130003.1|	-	0.11	12.2	3.9	0.18	11.6	3.9	1.2	1	0	0	1	1	1	0	Transforming	acidic	coiled-coil-containing	protein	(TACC),	C-terminal
Elongin_A	PF06881.11	gi|257052170|ref|YP_003130003.1|	-	0.13	12.7	1.2	0.3	11.6	1.2	1.5	1	0	0	1	1	1	0	RNA	polymerase	II	transcription	factor	SIII	(Elongin)	subunit	A
MbeD_MobD	PF04899.12	gi|257052170|ref|YP_003130003.1|	-	0.52	10.5	4.7	0.81	9.8	3.0	2.1	2	0	0	2	2	2	0	MbeD/MobD	like
Snapin_Pallidin	PF14712.6	gi|257052170|ref|YP_003130003.1|	-	0.65	10.5	3.2	1.5	9.3	3.2	1.6	1	0	0	1	1	1	0	Snapin/Pallidin
DUF4129	PF13559.6	gi|257052170|ref|YP_003130003.1|	-	2.2	8.6	15.3	0.022	15.0	5.9	2.7	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4129)
PI3K_P85_iSH2	PF16454.5	gi|257052170|ref|YP_003130003.1|	-	4.2	7.0	8.5	9.9	5.7	8.5	1.5	1	1	0	1	1	1	0	Phosphatidylinositol	3-kinase	regulatory	subunit	P85	inter-SH2	domain
AAA_3	PF07726.11	gi|257052171|ref|YP_003130004.1|	-	1.6e-60	202.7	0.1	2.4e-60	202.1	0.1	1.3	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_2	PF17863.1	gi|257052171|ref|YP_003130004.1|	-	1.7e-21	75.8	0.6	4e-21	74.6	0.6	1.7	1	0	0	1	1	1	1	AAA	lid	domain
AAA_5	PF07728.14	gi|257052171|ref|YP_003130004.1|	-	2.2e-17	63.3	0.0	3.9e-17	62.5	0.0	1.4	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
MCM	PF00493.23	gi|257052171|ref|YP_003130004.1|	-	7.2e-06	25.3	0.0	1.3e-05	24.4	0.0	1.5	1	1	0	1	1	1	1	MCM	P-loop	domain
Sigma54_activat	PF00158.26	gi|257052171|ref|YP_003130004.1|	-	0.00015	21.5	0.0	0.0033	17.2	0.0	2.2	1	1	0	1	1	1	1	Sigma-54	interaction	domain
AAA	PF00004.29	gi|257052171|ref|YP_003130004.1|	-	0.00032	21.1	0.0	0.0012	19.3	0.0	1.9	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
RuvB_N	PF05496.12	gi|257052171|ref|YP_003130004.1|	-	0.00034	20.4	0.1	0.0035	17.1	0.1	2.3	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
Mg_chelatase	PF01078.21	gi|257052171|ref|YP_003130004.1|	-	0.05	13.0	0.2	7.1	5.9	0.0	2.2	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
DUF1543	PF07566.12	gi|257052171|ref|YP_003130004.1|	-	0.11	12.2	0.0	0.35	10.6	0.0	1.8	1	0	0	1	1	1	0	Domain	of	Unknown	Function	(DUF1543)
TM_helix	PF05552.12	gi|257052172|ref|YP_003130005.1|	-	0.12	12.4	6.6	0.22	11.5	0.2	3.8	3	0	0	3	3	3	0	Conserved	TM	helix
FtsX	PF02687.21	gi|257052173|ref|YP_003130006.1|	-	2.6e-10	40.6	17.8	5.5e-07	30.0	7.4	4.3	5	0	0	5	5	5	2	FtsX-like	permease	family
A2M	PF00207.22	gi|257052173|ref|YP_003130006.1|	-	0.055	13.3	1.0	5.2	7.0	0.1	2.6	1	1	1	2	2	2	0	Alpha-2-macroglobulin	family
BsuPI	PF12690.7	gi|257052173|ref|YP_003130006.1|	-	0.16	12.0	0.0	0.9	9.6	0.0	2.0	2	0	0	2	2	2	0	Intracellular	proteinase	inhibitor
Big_3	PF07523.12	gi|257052173|ref|YP_003130006.1|	-	0.5	10.7	4.8	6.3	7.2	0.2	3.0	2	1	0	2	2	2	0	Bacterial	Ig-like	domain	(group	3)
CARDB	PF07705.11	gi|257052173|ref|YP_003130006.1|	-	1.7	9.0	9.6	0.87	9.9	0.3	2.9	3	0	0	3	3	3	0	CARDB
ABC_tran	PF00005.27	gi|257052174|ref|YP_003130007.1|	-	1.5e-30	106.5	0.0	2.1e-30	106.0	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|257052174|ref|YP_003130007.1|	-	0.00018	21.4	0.5	0.064	13.1	0.1	2.2	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|257052174|ref|YP_003130007.1|	-	0.00045	19.7	0.0	0.016	14.7	0.0	2.1	1	1	1	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|257052174|ref|YP_003130007.1|	-	0.0006	19.5	0.1	0.0012	18.5	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|257052174|ref|YP_003130007.1|	-	0.0038	17.6	0.7	0.009	16.4	0.7	1.8	1	1	0	1	1	1	1	AAA	ATPase	domain
DEAD	PF00270.29	gi|257052174|ref|YP_003130007.1|	-	0.018	14.8	0.1	0.023	14.4	0.1	1.5	1	1	0	1	1	1	0	DEAD/DEAH	box	helicase
NACHT	PF05729.12	gi|257052174|ref|YP_003130007.1|	-	0.021	14.7	2.5	0.032	14.1	0.3	2.2	2	1	1	3	3	3	0	NACHT	domain
SbcCD_C	PF13558.6	gi|257052174|ref|YP_003130007.1|	-	0.027	14.7	0.1	0.65	10.3	0.1	2.4	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
ATPase	PF06745.13	gi|257052174|ref|YP_003130007.1|	-	0.061	12.7	0.0	0.1	11.9	0.0	1.4	1	0	0	1	1	1	0	KaiC
NTPase_1	PF03266.15	gi|257052174|ref|YP_003130007.1|	-	0.09	12.7	0.0	2	8.3	0.0	2.1	2	0	0	2	2	2	0	NTPase
AAA_23	PF13476.6	gi|257052174|ref|YP_003130007.1|	-	0.15	12.5	0.0	0.29	11.6	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Mg_chelatase	PF01078.21	gi|257052174|ref|YP_003130007.1|	-	0.17	11.3	0.0	0.33	10.3	0.0	1.5	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
Xan_ur_permease	PF00860.20	gi|257052175|ref|YP_003130008.1|	-	2.8e-81	273.2	37.2	4.5e-81	272.5	37.2	1.3	1	0	0	1	1	1	1	Permease	family
Polysacc_deac_1	PF01522.21	gi|257052176|ref|YP_003130009.1|	-	2.4e-14	53.3	0.0	5.3e-14	52.2	0.0	1.5	1	0	0	1	1	1	1	Polysaccharide	deacetylase
NESP55	PF06390.12	gi|257052176|ref|YP_003130009.1|	-	0.0018	18.0	16.2	0.0028	17.3	16.2	1.3	1	0	0	1	1	1	1	Neuroendocrine-specific	golgi	protein	P55	(NESP55)
TAT_signal	PF10518.9	gi|257052176|ref|YP_003130009.1|	-	0.0074	16.1	0.9	0.0074	16.1	0.9	1.7	2	0	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Trypan_PARP	PF05887.11	gi|257052176|ref|YP_003130009.1|	-	0.012	15.6	20.6	0.03	14.3	20.6	1.6	1	0	0	1	1	1	0	Procyclic	acidic	repetitive	protein	(PARP)
Polysacc_deac_1	PF01522.21	gi|257052177|ref|YP_003130010.1|	-	2.6e-07	30.6	0.0	5.5e-07	29.5	0.0	1.5	1	0	0	1	1	1	1	Polysaccharide	deacetylase
DUF2635	PF10948.8	gi|257052177|ref|YP_003130010.1|	-	0.14	11.9	0.0	0.38	10.5	0.0	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2635)
RNA_pol_Rpc4	PF05132.14	gi|257052177|ref|YP_003130010.1|	-	2.6	8.4	4.9	4.4	7.7	4.9	1.2	1	0	0	1	1	1	0	RNA	polymerase	III	RPC4
Mucin	PF01456.17	gi|257052177|ref|YP_003130010.1|	-	4.3	7.3	14.1	8.5	6.4	14.1	1.4	1	0	0	1	1	1	0	Mucin-like	glycoprotein
NESP55	PF06390.12	gi|257052177|ref|YP_003130010.1|	-	6.9	6.2	23.7	11	5.5	23.7	1.2	1	0	0	1	1	1	0	Neuroendocrine-specific	golgi	protein	P55	(NESP55)
Auto_anti-p27	PF06677.12	gi|257052178|ref|YP_003130011.1|	-	7.2e-15	54.9	0.6	1e-14	54.4	0.6	1.2	1	0	0	1	1	1	1	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zinc-ribbons_6	PF07191.12	gi|257052178|ref|YP_003130011.1|	-	0.004	17.1	0.7	0.006	16.5	0.7	1.2	1	0	0	1	1	1	1	zinc-ribbons
DZR	PF12773.7	gi|257052178|ref|YP_003130011.1|	-	0.0092	16.0	1.6	0.017	15.2	1.6	1.4	1	0	0	1	1	1	1	Double	zinc	ribbon
Zn_Tnp_IS91	PF14319.6	gi|257052178|ref|YP_003130011.1|	-	0.087	12.9	0.5	0.16	12.0	0.5	1.4	1	0	0	1	1	1	0	Transposase	zinc-binding	domain
HypA	PF01155.19	gi|257052178|ref|YP_003130011.1|	-	0.17	11.9	0.8	0.29	11.2	0.8	1.3	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DUF2116	PF09889.9	gi|257052178|ref|YP_003130011.1|	-	2.2	8.3	5.7	7	6.7	0.8	2.2	2	0	0	2	2	2	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
zf-dskA_traR	PF01258.17	gi|257052178|ref|YP_003130011.1|	-	4.1	7.4	6.3	90	3.1	6.3	2.5	1	1	0	1	1	1	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
DUF3179	PF11376.8	gi|257052179|ref|YP_003130012.1|	-	2.9e-94	315.6	0.0	3.5e-94	315.4	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3179)
MerT	PF02411.15	gi|257052180|ref|YP_003130013.1|	-	0.014	15.5	2.5	0.014	15.5	2.5	1.8	2	0	0	2	2	2	0	MerT	mercuric	transport	protein
Ammonium_transp	PF00909.21	gi|257052180|ref|YP_003130013.1|	-	0.11	11.2	8.7	0.023	13.4	5.0	1.6	2	0	0	2	2	2	0	Ammonium	Transporter	Family
MMR_HSR1	PF01926.23	gi|257052181|ref|YP_003130014.1|	-	2e-18	66.5	0.0	3.1e-18	65.9	0.0	1.3	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
FeoB_N	PF02421.18	gi|257052181|ref|YP_003130014.1|	-	1.4e-13	50.6	0.0	2.3e-12	46.7	0.0	2.0	1	1	0	1	1	1	1	Ferrous	iron	transport	protein	B
GTP_EFTU	PF00009.27	gi|257052181|ref|YP_003130014.1|	-	6e-07	29.2	0.0	0.00033	20.2	0.0	2.2	2	0	0	2	2	2	2	Elongation	factor	Tu	GTP	binding	domain
RsgA_GTPase	PF03193.16	gi|257052181|ref|YP_003130014.1|	-	1.6e-05	24.9	0.4	0.02	14.8	0.1	2.6	3	1	0	3	3	3	2	RsgA	GTPase
MeaB	PF03308.16	gi|257052181|ref|YP_003130014.1|	-	0.0004	19.5	0.0	0.58	9.1	0.0	2.3	2	0	0	2	2	2	2	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
TIP49	PF06068.13	gi|257052181|ref|YP_003130014.1|	-	0.0044	16.3	0.2	0.0075	15.5	0.2	1.3	1	0	0	1	1	1	1	TIP49	P-loop	domain
Roc	PF08477.13	gi|257052181|ref|YP_003130014.1|	-	0.0055	16.9	0.0	0.01	16.1	0.0	1.4	1	0	0	1	1	1	1	Ras	of	Complex,	Roc,	domain	of	DAPkinase
Ras	PF00071.22	gi|257052181|ref|YP_003130014.1|	-	0.032	13.9	0.0	0.072	12.7	0.0	1.6	2	0	0	2	2	2	0	Ras	family
ATP_bind_1	PF03029.17	gi|257052181|ref|YP_003130014.1|	-	0.04	13.7	0.3	4.1	7.1	0.0	2.5	2	1	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
AIG1	PF04548.16	gi|257052181|ref|YP_003130014.1|	-	0.04	13.2	0.0	0.046	13.0	0.0	1.3	1	0	0	1	1	1	0	AIG1	family
AAA_18	PF13238.6	gi|257052181|ref|YP_003130014.1|	-	0.045	14.3	0.0	0.079	13.5	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
Dynamin_N	PF00350.23	gi|257052181|ref|YP_003130014.1|	-	0.047	13.8	0.1	3.1	7.8	0.0	2.2	1	1	1	2	2	2	0	Dynamin	family
SRPRB	PF09439.10	gi|257052181|ref|YP_003130014.1|	-	0.052	13.0	0.0	0.073	12.5	0.0	1.3	1	0	0	1	1	1	0	Signal	recognition	particle	receptor	beta	subunit
AAA_22	PF13401.6	gi|257052181|ref|YP_003130014.1|	-	0.097	12.9	0.1	0.66	10.3	0.1	2.4	1	1	0	1	1	1	0	AAA	domain
ABC_tran	PF00005.27	gi|257052181|ref|YP_003130014.1|	-	0.15	12.6	0.0	0.29	11.6	0.0	1.4	1	0	0	1	1	1	0	ABC	transporter
AAA_29	PF13555.6	gi|257052181|ref|YP_003130014.1|	-	0.17	11.7	0.0	0.34	10.7	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
RNA_helicase	PF00910.22	gi|257052181|ref|YP_003130014.1|	-	0.2	12.0	0.0	0.36	11.2	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
PfkB	PF00294.24	gi|257052182|ref|YP_003130015.1|	-	6.5e-39	134.0	1.9	1.2e-38	133.1	1.9	1.4	1	1	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Phos_pyr_kin	PF08543.12	gi|257052182|ref|YP_003130015.1|	-	0.0014	18.1	0.1	0.0027	17.2	0.0	1.5	2	0	0	2	2	2	1	Phosphomethylpyrimidine	kinase
Phage_RpbA	PF10789.9	gi|257052182|ref|YP_003130015.1|	-	0.21	11.7	0.0	0.38	10.8	0.0	1.4	1	0	0	1	1	1	0	Phage	RNA	polymerase	binding,	RpbA
Trp_oprn_chp	PF09534.10	gi|257052184|ref|YP_003130017.1|	-	0.0093	15.8	4.2	0.0093	15.8	4.2	1.8	1	1	0	1	1	1	1	Tryptophan-associated	transmembrane	protein	(Trp_oprn_chp)
ThrE	PF06738.12	gi|257052184|ref|YP_003130017.1|	-	0.41	10.0	4.2	0.23	10.8	1.7	1.8	2	0	0	2	2	2	0	Putative	threonine/serine	exporter
YdjM	PF04307.14	gi|257052184|ref|YP_003130017.1|	-	0.49	9.7	6.8	3.4	6.9	6.8	1.9	1	1	0	1	1	1	0	LexA-binding,	inner	membrane-associated	putative	hydrolase
Gram_pos_anchor	PF00746.21	gi|257052184|ref|YP_003130017.1|	-	2.2	8.3	6.2	1	9.3	0.2	2.9	2	1	1	3	3	3	0	LPXTG	cell	wall	anchor	motif
Ten1_2	PF15490.6	gi|257052185|ref|YP_003130018.1|	-	0.0077	15.9	0.0	0.011	15.4	0.0	1.2	1	0	0	1	1	1	1	Telomere-capping,	CST	complex	subunit
Methyltrn_RNA_2	PF04013.12	gi|257052186|ref|YP_003130019.1|	-	2e-57	194.1	0.0	2.3e-57	193.9	0.0	1.0	1	0	0	1	1	1	1	Putative	SAM-dependent	RNA	methyltransferase
PIN	PF01850.21	gi|257052189|ref|YP_003130022.1|	-	1.8e-08	34.9	0.0	4.2e-08	33.7	0.0	1.5	1	1	0	1	1	1	1	PIN	domain
XPG_I_2	PF12813.7	gi|257052189|ref|YP_003130022.1|	-	0.13	11.7	0.0	0.18	11.2	0.0	1.2	1	0	0	1	1	1	0	XPG	domain	containing
VAPB_antitox	PF02697.14	gi|257052190|ref|YP_003130023.1|	-	1.2e-13	51.7	5.2	1.5e-13	51.3	5.2	1.1	1	0	0	1	1	1	1	Putative	antitoxin
DUF1690	PF07956.11	gi|257052190|ref|YP_003130023.1|	-	0.01	16.2	1.8	0.012	16.0	1.8	1.1	1	0	0	1	1	1	0	Protein	of	Unknown	function	(DUF1690)
APG6_N	PF17675.1	gi|257052190|ref|YP_003130023.1|	-	0.018	15.6	1.1	0.025	15.1	1.1	1.2	1	0	0	1	1	1	0	Apg6	coiled-coil	region
Glyco_hydro_10	PF00331.20	gi|257052191|ref|YP_003130024.1|	-	5.8e-99	331.2	0.0	6.5e-99	331.0	0.0	1.0	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	10
Cellulase	PF00150.18	gi|257052191|ref|YP_003130024.1|	-	0.0012	18.4	1.0	0.094	12.1	0.3	2.5	2	1	1	3	3	3	3	Cellulase	(glycosyl	hydrolase	family	5)
AP_endonuc_2	PF01261.24	gi|257052191|ref|YP_003130024.1|	-	0.018	14.5	0.1	0.086	12.3	0.0	2.1	2	1	0	2	2	2	0	Xylose	isomerase-like	TIM	barrel
TAT_signal	PF10518.9	gi|257052192|ref|YP_003130025.1|	-	0.1	12.5	0.7	0.26	11.2	0.7	1.7	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Epimerase	PF01370.21	gi|257052193|ref|YP_003130026.1|	-	1.3e-36	126.3	0.0	1.5e-36	126.1	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|257052193|ref|YP_003130026.1|	-	7.8e-26	91.3	0.0	9.4e-26	91.0	0.0	1.1	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
RmlD_sub_bind	PF04321.17	gi|257052193|ref|YP_003130026.1|	-	3e-23	82.3	0.1	3.7e-23	82.0	0.1	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.19	gi|257052193|ref|YP_003130026.1|	-	2.6e-19	69.3	0.0	1.1e-18	67.3	0.0	1.8	1	1	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.15	gi|257052193|ref|YP_003130026.1|	-	7.5e-15	54.8	0.0	6.4e-14	51.8	0.0	2.2	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.12	gi|257052193|ref|YP_003130026.1|	-	3.3e-10	39.6	0.0	4e-07	29.5	0.0	2.6	1	1	1	2	2	2	2	Male	sterility	protein
NAD_binding_10	PF13460.6	gi|257052193|ref|YP_003130026.1|	-	1.5e-06	28.2	0.0	1.7e-05	24.8	0.0	2.1	2	0	0	2	2	2	1	NAD(P)H-binding
Sacchrp_dh_NADP	PF03435.18	gi|257052193|ref|YP_003130026.1|	-	0.011	16.0	0.1	0.025	14.8	0.1	1.7	1	1	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
Ldh_1_N	PF00056.23	gi|257052193|ref|YP_003130026.1|	-	0.014	15.5	0.1	0.032	14.3	0.1	1.5	2	0	0	2	2	2	0	lactate/malate	dehydrogenase,	NAD	binding	domain
DapB_N	PF01113.20	gi|257052193|ref|YP_003130026.1|	-	0.019	15.1	0.1	0.041	14.0	0.1	1.6	1	0	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
Semialdhyde_dh	PF01118.24	gi|257052193|ref|YP_003130026.1|	-	0.038	14.4	0.0	0.073	13.5	0.0	1.5	1	0	0	1	1	1	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
DUF357	PF04010.13	gi|257052193|ref|YP_003130026.1|	-	0.18	11.9	0.4	4.3	7.5	0.1	2.3	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF357)
Epimerase	PF01370.21	gi|257052194|ref|YP_003130027.1|	-	1.8e-51	174.9	0.0	2.2e-51	174.7	0.0	1.0	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|257052194|ref|YP_003130027.1|	-	7.3e-37	127.5	0.0	1.1e-36	126.9	0.0	1.4	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
3Beta_HSD	PF01073.19	gi|257052194|ref|YP_003130027.1|	-	1.1e-24	87.0	0.0	1.7e-24	86.3	0.0	1.3	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.17	gi|257052194|ref|YP_003130027.1|	-	9.5e-14	51.2	0.1	1.3e-13	50.8	0.1	1.2	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Polysacc_synt_2	PF02719.15	gi|257052194|ref|YP_003130027.1|	-	6.6e-13	48.4	0.0	1.7e-12	47.1	0.0	1.6	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_10	PF13460.6	gi|257052194|ref|YP_003130027.1|	-	9.1e-11	42.0	0.2	1.4e-10	41.4	0.2	1.3	1	0	0	1	1	1	1	NAD(P)H-binding
NAD_binding_4	PF07993.12	gi|257052194|ref|YP_003130027.1|	-	1.3e-08	34.4	0.8	1.9e-06	27.3	0.8	2.3	1	1	0	1	1	1	1	Male	sterility	protein
Sacchrp_dh_NADP	PF03435.18	gi|257052194|ref|YP_003130027.1|	-	1.2e-05	25.5	0.0	3.2e-05	24.2	0.0	1.7	1	1	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
KR	PF08659.10	gi|257052194|ref|YP_003130027.1|	-	0.00031	20.7	0.7	0.00092	19.2	0.7	1.9	1	1	0	1	1	1	1	KR	domain
adh_short	PF00106.25	gi|257052194|ref|YP_003130027.1|	-	0.0069	15.9	0.2	0.018	14.5	0.2	1.7	1	1	0	1	1	1	1	short	chain	dehydrogenase
NmrA	PF05368.13	gi|257052194|ref|YP_003130027.1|	-	0.0073	15.9	0.0	0.031	13.8	0.0	1.9	1	1	0	1	1	1	1	NmrA-like	family
Epimerase	PF01370.21	gi|257052195|ref|YP_003130028.1|	-	3.3e-19	69.3	0.1	7.3e-19	68.2	0.1	1.6	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|257052195|ref|YP_003130028.1|	-	6.4e-16	58.7	0.5	5.7e-12	45.7	0.0	2.5	2	1	0	2	2	2	2	GDP-mannose	4,6	dehydratase
Polysacc_synt_2	PF02719.15	gi|257052195|ref|YP_003130028.1|	-	6.4e-05	22.2	0.1	0.00056	19.1	0.0	2.2	2	1	0	2	2	2	1	Polysaccharide	biosynthesis	protein
3Beta_HSD	PF01073.19	gi|257052195|ref|YP_003130028.1|	-	0.011	14.7	0.0	0.04	12.9	0.0	2.0	2	1	0	2	2	2	0	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.17	gi|257052195|ref|YP_003130028.1|	-	0.023	13.8	0.0	0.42	9.6	0.1	2.7	2	1	0	2	2	2	0	RmlD	substrate	binding	domain
DUF2334	PF10096.9	gi|257052197|ref|YP_003130030.1|	-	8.8e-11	41.8	0.0	1.2e-10	41.5	0.0	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2334)
Polysacc_deac_1	PF01522.21	gi|257052197|ref|YP_003130030.1|	-	6.3e-06	26.1	0.0	1.1e-05	25.3	0.0	1.5	1	0	0	1	1	1	1	Polysaccharide	deacetylase
DUF2194	PF09960.9	gi|257052197|ref|YP_003130030.1|	-	0.022	13.1	0.0	0.035	12.5	0.0	1.2	1	0	0	1	1	1	0	Uncharacterised	protein	conserved	in	bacteria	(DUF2194)
Polysacc_synt_C	PF14667.6	gi|257052198|ref|YP_003130031.1|	-	5.7e-17	62.1	21.9	5.7e-17	62.1	21.9	4.2	2	2	3	5	5	5	1	Polysaccharide	biosynthesis	C-terminal	domain
Polysacc_synt_3	PF13440.6	gi|257052198|ref|YP_003130031.1|	-	3.4e-16	59.3	9.3	3.4e-16	59.3	9.3	2.5	2	1	1	3	3	3	1	Polysaccharide	biosynthesis	protein
Polysacc_synt	PF01943.17	gi|257052198|ref|YP_003130031.1|	-	1.2e-13	51.1	15.5	1.2e-13	51.1	15.5	3.0	2	1	0	2	2	2	1	Polysaccharide	biosynthesis	protein
MurJ	PF03023.14	gi|257052198|ref|YP_003130031.1|	-	1.2e-08	34.1	24.5	1.2e-08	34.1	24.5	1.7	1	1	0	1	1	1	1	Lipid	II	flippase	MurJ
Glycos_transf_1	PF00534.20	gi|257052199|ref|YP_003130032.1|	-	2.7e-31	108.4	0.0	4.8e-31	107.6	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|257052199|ref|YP_003130032.1|	-	9.4e-27	94.1	0.0	1.5e-26	93.4	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.6	gi|257052199|ref|YP_003130032.1|	-	4.9e-12	46.1	0.0	1.1e-11	44.9	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|257052199|ref|YP_003130032.1|	-	1e-05	25.6	0.0	2.6e-05	24.3	0.0	1.9	1	1	0	1	1	1	1	Glycosyltransferase	Family	4
Suppressor_APC	PF11414.8	gi|257052200|ref|YP_003130033.1|	-	0.028	14.5	0.1	0.057	13.5	0.1	1.4	1	0	0	1	1	1	0	Adenomatous	polyposis	coli	tumour	suppressor	protein
PglZ	PF08665.12	gi|257052200|ref|YP_003130033.1|	-	0.086	12.9	0.0	0.31	11.1	0.0	1.8	2	0	0	2	2	2	0	PglZ	domain
Methyltransf_24	PF13578.6	gi|257052201|ref|YP_003130034.1|	-	9.9e-18	65.1	0.0	1.9e-17	64.2	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
CmcI	PF04989.12	gi|257052201|ref|YP_003130034.1|	-	0.0016	18.2	0.1	0.076	12.7	0.0	2.4	2	0	0	2	2	2	1	Cephalosporin	hydroxylase
TetR_C_27	PF17935.1	gi|257052201|ref|YP_003130034.1|	-	0.0053	16.8	0.0	0.0083	16.2	0.0	1.3	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
Glycos_transf_1	PF00534.20	gi|257052202|ref|YP_003130035.1|	-	9.9e-34	116.3	0.0	1.8e-33	115.5	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|257052202|ref|YP_003130035.1|	-	7.2e-30	104.1	0.0	1.4e-29	103.3	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|257052202|ref|YP_003130035.1|	-	1.6e-18	67.3	0.0	1.2e-17	64.4	0.0	2.0	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|257052202|ref|YP_003130035.1|	-	3.5e-10	40.6	0.0	6.4e-10	39.7	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|257052202|ref|YP_003130035.1|	-	0.00012	22.3	0.0	0.00038	20.8	0.0	1.7	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glycos_transf_1	PF00534.20	gi|257052203|ref|YP_003130036.1|	-	1.2e-35	122.6	0.0	1.7e-35	122.1	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|257052203|ref|YP_003130036.1|	-	1e-32	113.4	0.0	2e-32	112.5	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|257052203|ref|YP_003130036.1|	-	1.8e-14	54.1	0.4	4e-14	53.0	0.1	1.7	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|257052203|ref|YP_003130036.1|	-	9.8e-14	52.1	8.7	1.8e-13	51.2	3.5	2.5	2	1	1	3	3	3	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|257052203|ref|YP_003130036.1|	-	1.5e-06	28.5	0.0	2.9e-06	27.6	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
PMT_2	PF13231.6	gi|257052204|ref|YP_003130037.1|	-	2.3e-06	27.9	10.0	2.3e-06	27.9	10.0	3.1	3	0	0	3	3	3	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
Glyco_transf_4	PF13439.6	gi|257052206|ref|YP_003130039.1|	-	2e-30	106.0	0.7	3.4e-30	105.3	0.7	1.4	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_1_4	PF13692.6	gi|257052206|ref|YP_003130039.1|	-	1.1e-28	100.3	0.3	1.7e-28	99.7	0.3	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glycos_transf_1	PF00534.20	gi|257052206|ref|YP_003130039.1|	-	7e-25	87.5	0.0	1.1e-24	86.9	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.6	gi|257052206|ref|YP_003130039.1|	-	1.2e-22	81.1	0.9	1.2e-22	81.1	0.9	2.4	3	0	0	3	3	3	1	Glycosyl	transferase	4-like	domain
Glyco_trans_4_2	PF13477.6	gi|257052206|ref|YP_003130039.1|	-	3.9e-06	26.9	0.0	5.9e-06	26.4	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	4-like
Glycos_transf_N	PF04413.16	gi|257052206|ref|YP_003130039.1|	-	0.0033	17.1	0.0	0.0054	16.4	0.0	1.3	1	0	0	1	1	1	1	3-Deoxy-D-manno-octulosonic-acid	transferase	(kdotransferase)
Glyco_trans_1_2	PF13524.6	gi|257052206|ref|YP_003130039.1|	-	0.085	13.3	0.0	0.18	12.2	0.0	1.6	1	0	0	1	1	1	0	Glycosyl	transferases	group	1
SWIM	PF04434.17	gi|257052207|ref|YP_003130040.1|	-	4e-06	26.4	0.1	8.3e-06	25.4	0.1	1.6	1	0	0	1	1	1	1	SWIM	zinc	finger
RtcB	PF01139.17	gi|257052208|ref|YP_003130041.1|	-	1.5e-56	192.3	0.0	1.1e-29	103.9	0.0	2.4	2	1	0	2	2	2	2	tRNA-splicing	ligase	RtcB
Acetyltransf_4	PF13420.7	gi|257052209|ref|YP_003130042.1|	-	6.2e-30	104.4	0.0	7.2e-30	104.2	0.0	1.0	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|257052209|ref|YP_003130042.1|	-	7.4e-13	48.8	0.0	1e-12	48.3	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_3	PF13302.7	gi|257052209|ref|YP_003130042.1|	-	3.1e-06	27.9	0.0	4e-06	27.5	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|257052209|ref|YP_003130042.1|	-	1.6e-05	24.8	0.0	2.3e-05	24.3	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|257052209|ref|YP_003130042.1|	-	0.00075	19.4	0.0	0.0015	18.5	0.0	1.5	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_7	PF13508.7	gi|257052209|ref|YP_003130042.1|	-	0.0055	17.1	0.0	0.0078	16.6	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
GNAT_acetyltran	PF12746.7	gi|257052209|ref|YP_003130042.1|	-	0.036	13.6	0.1	0.053	13.1	0.0	1.3	2	0	0	2	2	2	0	GNAT	acetyltransferase
MarR_2	PF12802.7	gi|257052210|ref|YP_003130043.1|	-	8.6e-07	28.8	0.0	2e-06	27.6	0.0	1.5	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.22	gi|257052210|ref|YP_003130043.1|	-	3.6e-06	26.8	0.0	5.9e-06	26.1	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|257052210|ref|YP_003130043.1|	-	0.0011	18.5	0.0	0.0018	17.8	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.19	gi|257052210|ref|YP_003130043.1|	-	0.0034	17.2	0.1	0.0054	16.6	0.1	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Penicillinase_R	PF03965.16	gi|257052210|ref|YP_003130043.1|	-	0.0097	16.3	0.0	0.016	15.6	0.0	1.3	1	0	0	1	1	1	1	Penicillinase	repressor
Sigma70_r4	PF04545.16	gi|257052210|ref|YP_003130043.1|	-	0.058	12.9	0.0	0.1	12.1	0.0	1.4	1	0	0	1	1	1	0	Sigma-70,	region	4
RPA_C	PF08784.11	gi|257052210|ref|YP_003130043.1|	-	0.068	13.8	0.6	0.2	12.4	0.1	2.1	2	1	0	2	2	2	0	Replication	protein	A	C	terminal
HTH_Crp_2	PF13545.6	gi|257052210|ref|YP_003130043.1|	-	0.083	12.9	0.0	0.13	12.2	0.0	1.4	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_27	PF13463.6	gi|257052210|ref|YP_003130043.1|	-	0.1	13.1	0.0	0.16	12.5	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_IclR	PF09339.10	gi|257052210|ref|YP_003130043.1|	-	0.11	12.3	0.0	0.2	11.5	0.0	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
SHOCT	PF09851.9	gi|257052212|ref|YP_003130045.1|	-	3e-10	39.5	1.7	4.3e-10	39.0	1.7	1.2	1	0	0	1	1	1	1	Short	C-terminal	domain
DUF1707	PF08044.11	gi|257052212|ref|YP_003130045.1|	-	0.00017	21.6	3.3	0.00026	21.0	3.3	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1707)
HTH_11	PF08279.12	gi|257052214|ref|YP_003130047.1|	-	0.00042	20.2	0.8	0.22	11.5	0.0	2.6	3	0	0	3	3	3	2	HTH	domain
HTH_24	PF13412.6	gi|257052214|ref|YP_003130047.1|	-	0.002	17.6	1.0	0.14	11.7	0.0	2.6	3	0	0	3	3	3	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|257052214|ref|YP_003130047.1|	-	0.0029	17.6	0.2	0.0029	17.6	0.2	2.8	3	0	0	3	3	3	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|257052214|ref|YP_003130047.1|	-	0.016	15.1	0.0	0.029	14.3	0.0	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|257052214|ref|YP_003130047.1|	-	0.016	15.0	0.0	0.045	13.6	0.0	1.8	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|257052214|ref|YP_003130047.1|	-	0.14	12.1	0.2	0.14	12.1	0.2	2.5	2	1	0	2	2	2	0	MarR	family
HTH_AsnC-type	PF13404.6	gi|257052214|ref|YP_003130047.1|	-	0.9	9.4	11.4	1.1	9.2	0.4	3.3	3	0	0	3	3	3	0	AsnC-type	helix-turn-helix	domain
GDP_Man_Dehyd	PF16363.5	gi|257052215|ref|YP_003130048.1|	-	5.3e-68	229.9	0.0	6.2e-68	229.6	0.0	1.1	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Epimerase	PF01370.21	gi|257052215|ref|YP_003130048.1|	-	6.8e-63	212.3	0.1	8.2e-63	212.1	0.1	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.19	gi|257052215|ref|YP_003130048.1|	-	7e-26	90.9	0.0	9.2e-26	90.5	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.17	gi|257052215|ref|YP_003130048.1|	-	3.3e-20	72.3	0.3	4.1e-20	72.1	0.3	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Polysacc_synt_2	PF02719.15	gi|257052215|ref|YP_003130048.1|	-	4.4e-17	62.2	0.0	2.3e-16	59.8	0.0	1.8	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_10	PF13460.6	gi|257052215|ref|YP_003130048.1|	-	5.6e-12	45.9	0.9	6.9e-11	42.4	0.9	2.2	1	1	0	1	1	1	1	NAD(P)H-binding
NAD_binding_4	PF07993.12	gi|257052215|ref|YP_003130048.1|	-	7.6e-09	35.1	0.5	9.7e-08	31.5	0.4	2.6	1	1	0	1	1	1	1	Male	sterility	protein
NmrA	PF05368.13	gi|257052215|ref|YP_003130048.1|	-	2.2e-06	27.4	0.3	5.7e-06	26.0	0.3	1.6	1	1	0	1	1	1	1	NmrA-like	family
adh_short	PF00106.25	gi|257052215|ref|YP_003130048.1|	-	2.1e-05	24.1	0.4	0.00025	20.6	0.4	2.6	1	1	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|257052215|ref|YP_003130048.1|	-	0.0001	22.3	0.5	0.00097	19.1	0.0	2.6	2	2	1	3	3	3	1	KR	domain
adh_short_C2	PF13561.6	gi|257052215|ref|YP_003130048.1|	-	0.0018	17.9	1.7	0.071	12.7	0.3	2.4	2	1	0	2	2	2	1	Enoyl-(Acyl	carrier	protein)	reductase
3HCDH_N	PF02737.18	gi|257052215|ref|YP_003130048.1|	-	0.0094	15.9	0.1	0.047	13.6	0.1	2.1	1	1	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
F420_oxidored	PF03807.17	gi|257052215|ref|YP_003130048.1|	-	0.026	15.1	0.1	0.093	13.3	0.0	2.0	2	1	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
TrkA_N	PF02254.18	gi|257052215|ref|YP_003130048.1|	-	0.049	13.9	0.7	0.36	11.1	0.4	2.7	2	1	0	2	2	2	0	TrkA-N	domain
NTP_transferase	PF00483.23	gi|257052216|ref|YP_003130049.1|	-	8.2e-44	150.0	0.0	9.1e-44	149.9	0.0	1.0	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|257052216|ref|YP_003130049.1|	-	4.6e-16	59.6	0.0	5.3e-16	59.4	0.0	1.1	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.19	gi|257052216|ref|YP_003130049.1|	-	4.4e-07	29.9	0.0	3.2e-06	27.1	0.0	2.1	2	0	0	2	2	2	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
UDPG_MGDP_dh_N	PF03721.14	gi|257052217|ref|YP_003130050.1|	-	1.2e-55	187.9	0.6	3.3e-55	186.6	0.2	1.8	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
UDPG_MGDP_dh	PF00984.19	gi|257052217|ref|YP_003130050.1|	-	5.2e-35	119.5	0.1	1.2e-34	118.3	0.0	1.7	2	0	0	2	2	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	central	domain
UDPG_MGDP_dh_C	PF03720.15	gi|257052217|ref|YP_003130050.1|	-	7.6e-28	97.0	0.1	5.1e-27	94.4	0.0	2.3	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
3HCDH_N	PF02737.18	gi|257052217|ref|YP_003130050.1|	-	8.3e-06	25.8	0.1	1.9e-05	24.7	0.1	1.6	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_Gly3P_dh_N	PF01210.23	gi|257052217|ref|YP_003130050.1|	-	6.4e-05	23.0	0.1	0.00015	21.8	0.1	1.7	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Pyr_redox	PF00070.27	gi|257052217|ref|YP_003130050.1|	-	0.0013	19.3	0.8	0.006	17.1	0.4	2.3	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
F420_oxidored	PF03807.17	gi|257052217|ref|YP_003130050.1|	-	0.0015	19.1	0.3	1.7	9.3	0.0	3.9	3	1	0	3	3	3	1	NADP	oxidoreductase	coenzyme	F420-dependent
Pyr_redox_2	PF07992.14	gi|257052217|ref|YP_003130050.1|	-	0.0018	17.5	0.1	0.0031	16.8	0.1	1.4	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
ApbA	PF02558.16	gi|257052217|ref|YP_003130050.1|	-	0.0093	15.6	0.0	0.017	14.8	0.0	1.5	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
TrkA_N	PF02254.18	gi|257052217|ref|YP_003130050.1|	-	0.032	14.5	1.9	0.33	11.2	0.1	3.1	3	0	0	3	3	3	0	TrkA-N	domain
AlaDh_PNT_C	PF01262.21	gi|257052217|ref|YP_003130050.1|	-	0.074	12.3	1.2	0.09	12.1	0.4	1.6	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
DUF4350	PF14258.6	gi|257052217|ref|YP_003130050.1|	-	0.081	13.4	0.2	2.9	8.4	0.0	2.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4350)
NAD_binding_2	PF03446.15	gi|257052217|ref|YP_003130050.1|	-	0.089	13.0	0.7	0.42	10.8	0.1	2.4	3	1	0	3	3	2	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
2-Hacid_dh_C	PF02826.19	gi|257052217|ref|YP_003130050.1|	-	0.13	11.6	0.1	0.75	9.1	0.0	2.2	3	0	0	3	3	3	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Semialdhyde_dh	PF01118.24	gi|257052217|ref|YP_003130050.1|	-	0.14	12.6	0.6	2	8.8	0.1	3.0	3	1	0	3	3	3	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
NAD_binding_11	PF14833.6	gi|257052217|ref|YP_003130050.1|	-	0.24	11.6	1.2	0.49	10.6	0.3	1.9	2	0	0	2	2	2	0	NAD-binding	of	NADP-dependent	3-hydroxyisobutyrate	dehydrogenase
DAO	PF01266.24	gi|257052217|ref|YP_003130050.1|	-	0.95	9.0	3.7	3.9	7.0	3.7	2.3	1	1	0	1	1	1	0	FAD	dependent	oxidoreductase
DUF433	PF04255.14	gi|257052218|ref|YP_003130051.1|	-	3.2e-13	49.3	0.4	4.6e-13	48.8	0.4	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF433)
DUF5615	PF18480.1	gi|257052219|ref|YP_003130052.1|	-	7.3e-16	57.7	0.3	2.4e-15	56.1	0.2	1.7	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF5615)
PIN_10	PF18478.1	gi|257052219|ref|YP_003130052.1|	-	4.1e-05	23.7	0.2	7.2e-05	22.9	0.2	1.4	1	0	0	1	1	1	1	PIN	like	domain
Mut7-C	PF01927.16	gi|257052219|ref|YP_003130052.1|	-	0.00013	22.1	0.0	0.00014	21.9	0.0	1.1	1	0	0	1	1	1	1	Mut7-C	RNAse	domain
Thiamine_BP	PF01910.17	gi|257052220|ref|YP_003130053.1|	-	2.5e-20	72.2	0.2	3e-20	71.9	0.2	1.0	1	0	0	1	1	1	1	Thiamine-binding	protein
LacI	PF00356.21	gi|257052220|ref|YP_003130053.1|	-	0.034	13.9	0.1	0.18	11.6	0.0	2.0	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	lacI	family
MCH	PF02289.16	gi|257052221|ref|YP_003130054.1|	-	2.4e-112	375.3	0.5	2.7e-112	375.1	0.5	1.0	1	0	0	1	1	1	1	Cyclohydrolase	(MCH)
Methyltransf_25	PF13649.6	gi|257052222|ref|YP_003130055.1|	-	5.1e-21	75.2	0.3	2.7e-20	72.9	0.1	2.0	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|257052222|ref|YP_003130055.1|	-	6.3e-21	74.8	0.4	1.5e-20	73.6	0.1	1.8	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|257052222|ref|YP_003130055.1|	-	2.6e-18	66.3	0.0	4.5e-18	65.5	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|257052222|ref|YP_003130055.1|	-	7.5e-18	65.1	0.1	1.6e-17	64.1	0.0	1.6	2	0	0	2	2	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|257052222|ref|YP_003130055.1|	-	2.2e-16	60.1	0.0	3.2e-16	59.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|257052222|ref|YP_003130055.1|	-	9.1e-10	38.3	0.0	1.9e-09	37.3	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	small	domain
CMAS	PF02353.20	gi|257052222|ref|YP_003130055.1|	-	5.5e-07	29.2	0.0	8e-07	28.6	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
NodS	PF05401.11	gi|257052222|ref|YP_003130055.1|	-	4.5e-06	26.4	0.0	6.9e-06	25.8	0.0	1.3	1	0	0	1	1	1	1	Nodulation	protein	S	(NodS)
PCMT	PF01135.19	gi|257052222|ref|YP_003130055.1|	-	6.3e-06	26.1	0.0	8.6e-06	25.7	0.0	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Ubie_methyltran	PF01209.18	gi|257052222|ref|YP_003130055.1|	-	1.9e-05	24.1	0.0	3e-05	23.5	0.0	1.3	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
DREV	PF05219.12	gi|257052222|ref|YP_003130055.1|	-	3.9e-05	22.9	0.0	5.5e-05	22.4	0.0	1.1	1	0	0	1	1	1	1	DREV	methyltransferase
Methyltransf_32	PF13679.6	gi|257052222|ref|YP_003130055.1|	-	6e-05	23.1	0.0	9.1e-05	22.5	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_9	PF08003.11	gi|257052222|ref|YP_003130055.1|	-	7.3e-05	21.8	0.0	9.1e-05	21.5	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
UPF0020	PF01170.18	gi|257052222|ref|YP_003130055.1|	-	0.00037	20.2	0.4	0.18	11.5	0.6	3.2	2	1	0	2	2	2	1	Putative	RNA	methylase	family	UPF0020
TPMT	PF05724.11	gi|257052222|ref|YP_003130055.1|	-	0.0012	18.6	0.0	0.0018	18.0	0.0	1.4	1	0	0	1	1	1	1	Thiopurine	S-methyltransferase	(TPMT)
MetW	PF07021.12	gi|257052222|ref|YP_003130055.1|	-	0.0012	18.5	0.0	0.0018	17.9	0.0	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Methyltransf_4	PF02390.17	gi|257052222|ref|YP_003130055.1|	-	0.0014	18.1	0.0	0.0044	16.5	0.0	1.8	1	1	0	1	1	1	1	Putative	methyltransferase
CheR	PF01739.18	gi|257052222|ref|YP_003130055.1|	-	0.0058	16.1	0.2	11	5.5	0.0	3.3	2	1	1	3	3	3	0	CheR	methyltransferase,	SAM	binding	domain
PrmA	PF06325.13	gi|257052222|ref|YP_003130055.1|	-	0.0083	15.5	0.1	0.012	15.1	0.1	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_2	PF00891.18	gi|257052222|ref|YP_003130055.1|	-	0.014	14.7	0.0	0.021	14.1	0.0	1.2	1	0	0	1	1	1	0	O-methyltransferase	domain
Methyltr_RsmB-F	PF01189.17	gi|257052222|ref|YP_003130055.1|	-	0.016	14.8	0.0	0.05	13.2	0.0	1.7	2	0	0	2	2	2	0	16S	rRNA	methyltransferase	RsmB/F
RrnaAD	PF00398.20	gi|257052222|ref|YP_003130055.1|	-	0.039	13.0	0.0	0.055	12.5	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
HAD_2	PF13419.6	gi|257052223|ref|YP_003130056.1|	-	3.3e-22	79.4	0.0	6.2e-22	78.5	0.0	1.4	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|257052223|ref|YP_003130056.1|	-	9e-14	52.3	0.1	1.9e-13	51.2	0.1	1.5	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|257052223|ref|YP_003130056.1|	-	4.7e-08	33.0	0.2	3.6e-07	30.1	0.1	2.3	1	1	1	2	2	2	1	HAD-hyrolase-like
HAD	PF12710.7	gi|257052223|ref|YP_003130056.1|	-	4e-07	30.6	0.3	5e-07	30.3	0.3	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Aldolase_II	PF00596.21	gi|257052225|ref|YP_003130058.1|	-	2.7e-46	157.9	0.0	3.1e-46	157.6	0.0	1.0	1	0	0	1	1	1	1	Class	II	Aldolase	and	Adducin	N-terminal	domain
FGGY_N	PF00370.21	gi|257052226|ref|YP_003130059.1|	-	2.4e-62	210.7	0.0	3.4e-62	210.2	0.0	1.2	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	N-terminal	domain
FGGY_C	PF02782.16	gi|257052226|ref|YP_003130059.1|	-	7.6e-33	113.9	0.0	1.1e-32	113.4	0.0	1.2	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	C-terminal	domain
BcrAD_BadFG	PF01869.20	gi|257052226|ref|YP_003130059.1|	-	0.0028	17.2	0.0	0.0054	16.3	0.0	1.4	1	0	0	1	1	1	1	BadF/BadG/BcrA/BcrD	ATPase	family
Glyco_hydro_127	PF07944.12	gi|257052227|ref|YP_003130060.1|	-	3e-160	534.2	0.0	3.7e-160	533.9	0.0	1.1	1	0	0	1	1	1	1	Beta-L-arabinofuranosidase,	GH127
Alpha-L-AF_C	PF06964.12	gi|257052228|ref|YP_003130061.1|	-	1.7e-31	109.6	0.8	2.4e-31	109.1	0.8	1.2	1	0	0	1	1	1	1	Alpha-L-arabinofuranosidase	C-terminal	domain
Glyco_hydro_97	PF10566.9	gi|257052229|ref|YP_003130062.1|	-	2.6e-70	236.9	5.0	9.6e-70	235.0	5.0	1.8	1	1	0	1	1	1	1	Glycoside	hydrolase	97
GH97_N	PF14508.6	gi|257052229|ref|YP_003130062.1|	-	2.8e-38	131.7	0.0	4.4e-38	131.1	0.0	1.2	1	0	0	1	1	1	1	Glycosyl-hydrolase	97	N-terminal
GH97_C	PF14509.6	gi|257052229|ref|YP_003130062.1|	-	4.1e-20	71.8	0.0	6.5e-19	68.0	0.0	2.4	2	0	0	2	2	2	1	Glycosyl-hydrolase	97	C-terminal,	oligomerisation
Arabinose_Isome	PF02610.15	gi|257052230|ref|YP_003130063.1|	-	7.4e-174	578.0	0.0	9.6e-174	577.7	0.0	1.1	1	0	0	1	1	1	1	L-arabinose	isomerase
Arabinose_Iso_C	PF11762.8	gi|257052230|ref|YP_003130063.1|	-	3.8e-50	168.5	0.0	1.3e-49	166.8	0.0	1.9	2	0	0	2	2	2	1	L-arabinose	isomerase	C-terminal	domain
GTP_EFTU	PF00009.27	gi|257052231|ref|YP_003130064.1|	-	6.5e-35	120.4	0.0	1e-34	119.8	0.0	1.3	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
GTP_EFTU_D2	PF03144.25	gi|257052231|ref|YP_003130064.1|	-	3.5e-09	36.9	0.6	1e-08	35.4	0.6	1.9	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	2
GTP_EFTU_D3	PF03143.17	gi|257052231|ref|YP_003130064.1|	-	2.8e-07	30.8	0.0	1.8e-06	28.2	0.0	2.1	1	1	0	1	1	1	1	Elongation	factor	Tu	C-terminal	domain
ATP_bind_1	PF03029.17	gi|257052231|ref|YP_003130064.1|	-	0.016	15.0	0.3	0.12	12.1	0.0	2.0	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
RsgA_GTPase	PF03193.16	gi|257052231|ref|YP_003130064.1|	-	0.019	14.9	0.2	1	9.2	0.0	2.8	2	1	0	2	2	2	0	RsgA	GTPase
MMR_HSR1	PF01926.23	gi|257052231|ref|YP_003130064.1|	-	0.084	13.0	0.0	0.34	11.0	0.0	2.0	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
Hydrolase_3	PF08282.12	gi|257052232|ref|YP_003130065.1|	-	2.2e-26	93.2	0.1	3.7e-17	62.9	0.1	2.0	2	0	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|257052232|ref|YP_003130065.1|	-	4.4e-08	33.7	4.6	0.00016	22.0	0.0	3.2	2	1	1	3	3	3	3	haloacid	dehalogenase-like	hydrolase
S6PP	PF05116.13	gi|257052232|ref|YP_003130065.1|	-	9.7e-07	28.6	0.1	2.6e-05	23.9	0.0	2.1	2	0	0	2	2	2	1	Sucrose-6F-phosphate	phosphohydrolase
HAD_2	PF13419.6	gi|257052232|ref|YP_003130065.1|	-	0.025	14.7	1.6	0.037	14.1	0.0	1.9	2	0	0	2	2	2	0	Haloacid	dehalogenase-like	hydrolase
Trehalose_PPase	PF02358.16	gi|257052232|ref|YP_003130065.1|	-	0.17	11.0	0.5	0.24	10.5	0.0	1.5	2	0	0	2	2	2	0	Trehalose-phosphatase
DUF389	PF04087.14	gi|257052233|ref|YP_003130066.1|	-	1.2e-33	116.2	16.4	1.2e-33	116.2	16.4	2.2	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF389)
SIMPL	PF04402.14	gi|257052234|ref|YP_003130067.1|	-	8.7e-40	137.3	11.7	1e-39	137.1	11.7	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF541)
Antimicrobial10	PF08105.11	gi|257052234|ref|YP_003130067.1|	-	0.24	11.5	0.5	0.7	10.0	0.5	1.8	1	0	0	1	1	1	0	Metchnikowin	family
DotU	PF09850.9	gi|257052234|ref|YP_003130067.1|	-	0.4	10.4	0.1	0.4	10.4	0.1	2.0	3	0	0	3	3	3	0	Type	VI	secretion	system	protein	DotU
NOG1_N	PF17835.1	gi|257052235|ref|YP_003130068.1|	-	7.6e-45	152.8	0.0	1.2e-44	152.1	0.0	1.3	1	0	0	1	1	1	1	NOG1	N-terminal	helical	domain
NOG1	PF06858.14	gi|257052235|ref|YP_003130068.1|	-	4.5e-22	77.6	0.0	9.4e-22	76.6	0.0	1.6	1	0	0	1	1	1	1	Nucleolar	GTP-binding	protein	1	(NOG1)
MMR_HSR1	PF01926.23	gi|257052235|ref|YP_003130068.1|	-	1.4e-21	76.7	0.0	4.6e-21	75.0	0.0	1.8	2	1	0	2	2	2	1	50S	ribosome-binding	GTPase
FeoB_N	PF02421.18	gi|257052235|ref|YP_003130068.1|	-	1.6e-11	43.9	0.0	2.5e-11	43.3	0.0	1.3	1	0	0	1	1	1	1	Ferrous	iron	transport	protein	B
Dynamin_N	PF00350.23	gi|257052235|ref|YP_003130068.1|	-	0.00011	22.3	0.0	0.41	10.7	0.0	2.6	1	1	1	2	2	2	2	Dynamin	family
AIG1	PF04548.16	gi|257052235|ref|YP_003130068.1|	-	0.002	17.5	0.0	0.003	16.9	0.0	1.3	1	0	0	1	1	1	1	AIG1	family
RsgA_GTPase	PF03193.16	gi|257052235|ref|YP_003130068.1|	-	0.013	15.4	0.0	0.051	13.5	0.0	2.0	1	1	0	1	1	1	0	RsgA	GTPase
GTP_EFTU	PF00009.27	gi|257052235|ref|YP_003130068.1|	-	0.019	14.5	0.1	0.2	11.2	0.1	2.4	1	1	1	2	2	2	0	Elongation	factor	Tu	GTP	binding	domain
AAA_16	PF13191.6	gi|257052235|ref|YP_003130068.1|	-	0.019	15.3	0.1	0.082	13.3	0.0	2.0	1	1	1	2	2	2	0	AAA	ATPase	domain
Phage_tail_APC	PF16778.5	gi|257052235|ref|YP_003130068.1|	-	0.055	13.4	1.2	0.19	11.7	1.2	1.9	1	0	0	1	1	1	0	Phage	tail	assembly	chaperone	protein
FUSC	PF04632.12	gi|257052235|ref|YP_003130068.1|	-	0.064	11.8	1.3	0.088	11.3	1.3	1.2	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
AAA_18	PF13238.6	gi|257052235|ref|YP_003130068.1|	-	0.083	13.4	0.0	1.2	9.7	0.0	2.5	3	0	0	3	3	3	0	AAA	domain
SRPRB	PF09439.10	gi|257052235|ref|YP_003130068.1|	-	0.088	12.2	0.0	1.9	7.9	0.0	2.5	2	1	0	2	2	2	0	Signal	recognition	particle	receptor	beta	subunit
Roc	PF08477.13	gi|257052235|ref|YP_003130068.1|	-	0.14	12.4	0.0	1.4	9.2	0.0	2.3	1	1	0	1	1	1	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
Ras	PF00071.22	gi|257052235|ref|YP_003130068.1|	-	0.18	11.4	0.0	0.53	9.9	0.0	1.8	1	1	0	1	1	1	0	Ras	family
AAA	PF00004.29	gi|257052236|ref|YP_003130069.1|	-	5.6e-44	149.8	0.8	9.3e-44	149.1	0.1	1.8	2	0	0	2	2	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|257052236|ref|YP_003130069.1|	-	9.1e-14	51.0	0.6	9.1e-14	51.0	0.6	2.1	2	0	0	2	2	1	1	AAA+	lid	domain
AAA_2	PF07724.14	gi|257052236|ref|YP_003130069.1|	-	4.1e-08	33.5	0.0	1.2e-07	32.0	0.0	1.8	1	0	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
RuvB_N	PF05496.12	gi|257052236|ref|YP_003130069.1|	-	4.3e-07	29.8	0.5	1.3e-06	28.2	0.0	2.0	3	0	0	3	3	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_16	PF13191.6	gi|257052236|ref|YP_003130069.1|	-	4.4e-07	30.4	3.9	0.00015	22.2	0.0	3.4	2	1	1	3	3	3	1	AAA	ATPase	domain
AAA_5	PF07728.14	gi|257052236|ref|YP_003130069.1|	-	1.1e-06	28.7	1.6	6.4e-06	26.2	0.2	2.8	2	1	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA_22	PF13401.6	gi|257052236|ref|YP_003130069.1|	-	1.1e-05	25.7	3.3	0.00049	20.4	0.0	3.1	2	1	1	3	3	3	1	AAA	domain
ZapB	PF06005.12	gi|257052236|ref|YP_003130069.1|	-	0.00024	21.5	2.8	0.00024	21.5	2.8	2.2	3	0	0	3	3	1	1	Cell	division	protein	ZapB
DUF815	PF05673.13	gi|257052236|ref|YP_003130069.1|	-	0.00027	20.2	0.2	0.00055	19.2	0.0	1.6	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF815)
TIP49	PF06068.13	gi|257052236|ref|YP_003130069.1|	-	0.00084	18.6	0.1	0.0026	17.0	0.0	1.7	1	1	0	1	1	1	1	TIP49	P-loop	domain
AAA_33	PF13671.6	gi|257052236|ref|YP_003130069.1|	-	0.0016	18.6	0.1	0.0016	18.6	0.1	2.3	3	1	0	3	3	2	1	AAA	domain
AAA_28	PF13521.6	gi|257052236|ref|YP_003130069.1|	-	0.0021	18.3	0.5	0.0077	16.5	0.0	2.3	2	1	0	2	2	2	1	AAA	domain
Sigma54_activat	PF00158.26	gi|257052236|ref|YP_003130069.1|	-	0.0023	17.7	0.1	0.03	14.0	0.1	2.5	1	1	0	1	1	1	1	Sigma-54	interaction	domain
AAA_14	PF13173.6	gi|257052236|ref|YP_003130069.1|	-	0.0027	17.7	0.0	0.006	16.6	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
NTPase_1	PF03266.15	gi|257052236|ref|YP_003130069.1|	-	0.0028	17.6	0.4	0.95	9.3	0.1	2.9	2	1	1	3	3	3	1	NTPase
Mg_chelatase	PF01078.21	gi|257052236|ref|YP_003130069.1|	-	0.0028	17.1	0.0	0.0053	16.2	0.0	1.4	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
NACHT	PF05729.12	gi|257052236|ref|YP_003130069.1|	-	0.0045	16.9	0.3	0.051	13.5	0.0	2.3	1	1	1	2	2	2	1	NACHT	domain
AAA_18	PF13238.6	gi|257052236|ref|YP_003130069.1|	-	0.0049	17.4	0.1	0.027	15.0	0.0	2.1	2	1	0	2	2	2	1	AAA	domain
AAA_17	PF13207.6	gi|257052236|ref|YP_003130069.1|	-	0.0055	17.1	1.7	0.041	14.3	0.1	2.7	2	1	0	2	2	2	1	AAA	domain
Taxilin	PF09728.9	gi|257052236|ref|YP_003130069.1|	-	0.0055	15.9	2.0	0.0092	15.2	2.0	1.2	1	0	0	1	1	1	1	Myosin-like	coiled-coil	protein
IstB_IS21	PF01695.17	gi|257052236|ref|YP_003130069.1|	-	0.0061	16.3	0.0	0.016	14.9	0.0	1.7	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_3	PF07726.11	gi|257052236|ref|YP_003130069.1|	-	0.0093	15.8	0.1	0.034	14.0	0.0	2.0	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_11	PF13086.6	gi|257052236|ref|YP_003130069.1|	-	0.01	15.7	0.1	0.053	13.3	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
GIT_CC	PF16559.5	gi|257052236|ref|YP_003130069.1|	-	0.012	15.4	3.8	0.19	11.6	2.9	2.6	2	1	0	2	2	2	0	GIT	coiled-coil	Rho	guanine	nucleotide	exchange	factor
CPT	PF07931.12	gi|257052236|ref|YP_003130069.1|	-	0.012	15.4	0.0	0.027	14.3	0.0	1.6	1	0	0	1	1	1	0	Chloramphenicol	phosphotransferase-like	protein
TsaE	PF02367.17	gi|257052236|ref|YP_003130069.1|	-	0.016	15.2	0.0	0.032	14.2	0.0	1.5	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
Rootletin	PF15035.6	gi|257052236|ref|YP_003130069.1|	-	0.016	15.2	0.8	0.035	14.1	0.8	1.5	1	0	0	1	1	1	0	Ciliary	rootlet	component,	centrosome	cohesion
NB-ARC	PF00931.22	gi|257052236|ref|YP_003130069.1|	-	0.018	14.2	0.0	0.062	12.5	0.0	1.9	1	1	0	1	1	1	0	NB-ARC	domain
SHE3	PF17078.5	gi|257052236|ref|YP_003130069.1|	-	0.023	14.4	0.8	0.049	13.3	0.8	1.4	1	0	0	1	1	1	0	SWI5-dependent	HO	expression	protein	3
AAA_7	PF12775.7	gi|257052236|ref|YP_003130069.1|	-	0.023	14.2	0.1	0.054	13.0	0.1	1.6	1	1	0	1	1	1	0	P-loop	containing	dynein	motor	region
Sigma54_activ_2	PF14532.6	gi|257052236|ref|YP_003130069.1|	-	0.025	14.7	0.1	0.17	12.0	0.0	2.2	2	0	0	2	2	2	0	Sigma-54	interaction	domain
RNA_helicase	PF00910.22	gi|257052236|ref|YP_003130069.1|	-	0.031	14.7	0.0	0.075	13.4	0.0	1.7	2	0	0	2	2	1	0	RNA	helicase
COG6	PF06419.11	gi|257052236|ref|YP_003130069.1|	-	0.037	12.3	1.1	0.058	11.6	1.1	1.2	1	0	0	1	1	1	0	Conserved	oligomeric	complex	COG6
AAA_24	PF13479.6	gi|257052236|ref|YP_003130069.1|	-	0.039	13.7	0.8	0.11	12.2	0.1	2.1	2	1	0	2	2	1	0	AAA	domain
Torsin	PF06309.11	gi|257052236|ref|YP_003130069.1|	-	0.047	13.8	0.0	0.1	12.7	0.0	1.4	1	0	0	1	1	1	0	Torsin
DNA_Packaging	PF11053.8	gi|257052236|ref|YP_003130069.1|	-	0.054	13.3	0.6	1.2	9.0	0.1	2.4	2	0	0	2	2	2	0	Terminase	DNA	packaging	enzyme
DUF4515	PF14988.6	gi|257052236|ref|YP_003130069.1|	-	0.061	13.2	2.3	0.066	13.0	1.3	1.5	2	0	0	2	2	1	0	Domain	of	unknown	function	(DUF4515)
ABC_tran	PF00005.27	gi|257052236|ref|YP_003130069.1|	-	0.11	13.0	0.2	0.44	11.1	0.0	2.2	3	0	0	3	3	1	0	ABC	transporter
Parvo_NS1	PF01057.17	gi|257052236|ref|YP_003130069.1|	-	0.14	11.2	0.0	0.27	10.3	0.0	1.4	1	0	0	1	1	1	0	Parvovirus	non-structural	protein	NS1
APG6_N	PF17675.1	gi|257052236|ref|YP_003130069.1|	-	0.14	12.7	3.3	0.55	10.8	3.3	2.0	1	0	0	1	1	1	0	Apg6	coiled-coil	region
ATPase	PF06745.13	gi|257052236|ref|YP_003130069.1|	-	0.16	11.3	4.0	0.47	9.8	0.3	3.0	2	1	0	2	2	2	0	KaiC
AAA_13	PF13166.6	gi|257052236|ref|YP_003130069.1|	-	0.95	8.0	4.0	3.4	6.2	2.4	2.2	2	1	0	3	3	3	0	AAA	domain
TolA_bind_tri	PF16331.5	gi|257052236|ref|YP_003130069.1|	-	1.3	9.2	9.4	0.099	12.7	2.5	2.6	3	0	0	3	3	2	0	TolA	binding	protein	trimerisation
AAA_25	PF13481.6	gi|257052236|ref|YP_003130069.1|	-	3.1	7.3	9.5	0.54	9.8	0.1	3.5	3	1	0	4	4	3	0	AAA	domain
Peptidase_M3	PF01432.20	gi|257052237|ref|YP_003130070.1|	-	1.3e-67	229.0	1.4	1.9e-67	228.5	1.1	1.4	2	0	0	2	2	2	1	Peptidase	family	M3
Peptidase_M3_N	PF08439.10	gi|257052237|ref|YP_003130070.1|	-	6.6e-24	84.0	2.3	1.9e-23	82.5	0.3	2.9	3	0	0	3	3	3	1	Oligopeptidase	F
Reprolysin_5	PF13688.6	gi|257052237|ref|YP_003130070.1|	-	0.16	12.1	0.1	0.58	10.3	0.0	1.9	2	0	0	2	2	2	0	Metallo-peptidase	family	M12
Reprolysin_3	PF13582.6	gi|257052237|ref|YP_003130070.1|	-	0.17	12.4	0.2	0.57	10.7	0.0	2.0	2	0	0	2	2	2	0	Metallo-peptidase	family	M12B	Reprolysin-like
DUF5638	PF18688.1	gi|257052237|ref|YP_003130070.1|	-	0.24	11.7	0.8	8.1	6.8	0.0	3.6	4	0	0	4	4	4	0	Family	of	unknown	function	(DUF5638)
Glyco_hydro_3	PF00933.21	gi|257052239|ref|YP_003130072.1|	-	2.5e-69	234.1	0.0	3.2e-69	233.7	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	N	terminal	domain
Glyco_hydro_3_C	PF01915.22	gi|257052239|ref|YP_003130072.1|	-	1.6e-49	168.7	0.0	3.6e-49	167.5	0.0	1.6	2	0	0	2	2	2	1	Glycosyl	hydrolase	family	3	C-terminal	domain
Fn3-like	PF14310.6	gi|257052239|ref|YP_003130072.1|	-	1e-13	51.2	0.0	2.5e-13	49.9	0.0	1.7	1	0	0	1	1	1	1	Fibronectin	type	III-like	domain
ABC2_membrane_3	PF12698.7	gi|257052241|ref|YP_003130074.1|	-	8.7e-07	28.4	8.9	1.7e-06	27.4	8.9	1.4	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.24	gi|257052241|ref|YP_003130074.1|	-	1.3e-05	24.8	7.9	1.3e-05	24.8	7.9	1.8	2	0	0	2	2	2	1	ABC-2	type	transporter
DUF3267	PF11667.8	gi|257052241|ref|YP_003130074.1|	-	7.9	6.8	8.9	2.9	8.2	3.5	2.7	1	1	1	2	2	2	0	Putative	zincin	peptidase
ABC_tran	PF00005.27	gi|257052242|ref|YP_003130075.1|	-	3.1e-26	92.5	0.0	4.5e-26	92.0	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|257052242|ref|YP_003130075.1|	-	3.4e-10	40.2	0.0	0.00025	21.0	0.0	2.2	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_23	PF13476.6	gi|257052242|ref|YP_003130075.1|	-	5.3e-05	23.8	0.0	7.7e-05	23.3	0.0	1.3	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|257052242|ref|YP_003130075.1|	-	0.00038	20.1	0.1	0.00069	19.3	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
MukB	PF04310.12	gi|257052242|ref|YP_003130075.1|	-	0.0046	16.8	0.0	0.0069	16.2	0.0	1.4	1	0	0	1	1	1	1	MukB	N-terminal
AAA_15	PF13175.6	gi|257052242|ref|YP_003130075.1|	-	0.0077	16.0	0.2	0.011	15.4	0.2	1.1	1	0	0	1	1	1	1	AAA	ATPase	domain
MMR_HSR1	PF01926.23	gi|257052242|ref|YP_003130075.1|	-	0.0078	16.3	0.0	0.015	15.4	0.0	1.4	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
RsgA_GTPase	PF03193.16	gi|257052242|ref|YP_003130075.1|	-	0.0088	16.0	0.1	0.015	15.2	0.1	1.3	1	0	0	1	1	1	1	RsgA	GTPase
NACHT	PF05729.12	gi|257052242|ref|YP_003130075.1|	-	0.038	13.9	0.0	0.06	13.3	0.0	1.3	1	0	0	1	1	1	0	NACHT	domain
MobB	PF03205.14	gi|257052242|ref|YP_003130075.1|	-	0.042	13.7	0.0	0.67	9.8	0.0	2.1	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
SMC_N	PF02463.19	gi|257052242|ref|YP_003130075.1|	-	0.044	13.2	0.0	0.17	11.3	0.0	1.8	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|257052242|ref|YP_003130075.1|	-	0.079	13.3	0.0	0.13	12.7	0.0	1.4	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_30	PF13604.6	gi|257052242|ref|YP_003130075.1|	-	0.096	12.4	0.2	0.16	11.6	0.2	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_22	PF13401.6	gi|257052242|ref|YP_003130075.1|	-	0.11	12.7	0.0	0.2	11.9	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
DUF87	PF01935.17	gi|257052242|ref|YP_003130075.1|	-	0.12	12.5	0.2	0.29	11.2	0.1	1.6	2	0	0	2	2	2	0	Helicase	HerA,	central	domain
RNA_helicase	PF00910.22	gi|257052242|ref|YP_003130075.1|	-	0.18	12.2	0.0	0.3	11.5	0.0	1.3	1	0	0	1	1	1	0	RNA	helicase
HTH_20	PF12840.7	gi|257052243|ref|YP_003130076.1|	-	0.0064	16.5	0.3	2.8	8.1	0.0	2.3	2	0	0	2	2	2	2	Helix-turn-helix	domain
DUF4164	PF13747.6	gi|257052243|ref|YP_003130076.1|	-	0.0074	16.5	2.6	0.0074	16.5	2.6	1.8	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4164)
SMC_ScpB	PF04079.16	gi|257052243|ref|YP_003130076.1|	-	0.012	15.3	0.4	0.048	13.3	0.1	2.0	1	1	1	2	2	2	0	Segregation	and	condensation	complex	subunit	ScpB
Penicillinase_R	PF03965.16	gi|257052243|ref|YP_003130076.1|	-	0.016	15.6	0.2	0.024	15.0	0.2	1.3	1	0	0	1	1	1	0	Penicillinase	repressor
HTH_IclR	PF09339.10	gi|257052243|ref|YP_003130076.1|	-	0.016	15.0	0.1	0.034	13.9	0.1	1.5	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
TrmB	PF01978.19	gi|257052243|ref|YP_003130076.1|	-	0.051	13.5	0.1	0.11	12.4	0.1	1.6	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
DUF4363	PF14276.6	gi|257052243|ref|YP_003130076.1|	-	0.062	13.4	0.0	0.12	12.5	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4363)
REV	PF00424.18	gi|257052243|ref|YP_003130076.1|	-	0.1	12.6	0.6	0.22	11.6	0.5	1.6	2	0	0	2	2	2	0	REV	protein	(anti-repression	trans-activator	protein)
HTH_36	PF13730.6	gi|257052243|ref|YP_003130076.1|	-	0.16	11.9	0.0	0.36	10.8	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
RHH_1	PF01402.21	gi|257052244|ref|YP_003130077.1|	-	0.15	12.0	0.0	0.21	11.6	0.0	1.2	1	0	0	1	1	1	0	Ribbon-helix-helix	protein,	copG	family
IGPS	PF00218.21	gi|257052245|ref|YP_003130078.1|	-	3.6e-66	222.9	0.0	4.2e-66	222.7	0.0	1.0	1	0	0	1	1	1	1	Indole-3-glycerol	phosphate	synthase
FMN_dh	PF01070.18	gi|257052245|ref|YP_003130078.1|	-	7.8e-07	28.4	2.6	1.7e-06	27.3	2.6	1.5	2	0	0	2	2	2	1	FMN-dependent	dehydrogenase
NanE	PF04131.14	gi|257052245|ref|YP_003130078.1|	-	7e-06	25.4	1.2	3.3e-05	23.2	1.2	2.1	1	1	0	1	1	1	1	Putative	N-acetylmannosamine-6-phosphate	epimerase
His_biosynth	PF00977.21	gi|257052245|ref|YP_003130078.1|	-	9.5e-06	25.2	0.1	0.00047	19.7	0.2	2.3	2	0	0	2	2	2	1	Histidine	biosynthesis	protein
QRPTase_C	PF01729.19	gi|257052245|ref|YP_003130078.1|	-	0.0073	16.1	0.2	0.012	15.4	0.2	1.3	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
Trp_syntA	PF00290.20	gi|257052245|ref|YP_003130078.1|	-	0.0092	14.9	0.1	0.014	14.2	0.1	1.4	1	0	0	1	1	1	1	Tryptophan	synthase	alpha	chain
DHO_dh	PF01180.21	gi|257052245|ref|YP_003130078.1|	-	0.038	13.2	0.2	0.061	12.5	0.2	1.3	1	0	0	1	1	1	0	Dihydroorotate	dehydrogenase
AP_endonuc_2	PF01261.24	gi|257052245|ref|YP_003130078.1|	-	0.041	13.3	0.1	0.63	9.4	0.1	2.3	2	1	0	2	2	2	0	Xylose	isomerase-like	TIM	barrel
IMPDH	PF00478.25	gi|257052245|ref|YP_003130078.1|	-	0.057	12.4	1.4	0.12	11.3	0.3	1.9	1	1	1	2	2	2	0	IMP	dehydrogenase	/	GMP	reductase	domain
EAL	PF00563.20	gi|257052245|ref|YP_003130078.1|	-	0.087	12.3	1.0	0.13	11.7	1.0	1.2	1	0	0	1	1	1	0	EAL	domain
PALP	PF00291.25	gi|257052246|ref|YP_003130079.1|	-	7.9e-40	137.1	0.6	9.8e-40	136.8	0.6	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Trp_syntA	PF00290.20	gi|257052247|ref|YP_003130080.1|	-	3.4e-92	307.9	0.0	4.1e-92	307.7	0.0	1.0	1	0	0	1	1	1	1	Tryptophan	synthase	alpha	chain
His_biosynth	PF00977.21	gi|257052247|ref|YP_003130080.1|	-	0.00017	21.1	0.1	0.00042	19.9	0.1	1.6	2	0	0	2	2	2	1	Histidine	biosynthesis	protein
PcrB	PF01884.17	gi|257052247|ref|YP_003130080.1|	-	0.00019	21.0	0.2	0.0035	16.8	0.2	2.1	2	0	0	2	2	2	1	PcrB	family
PucR	PF07905.11	gi|257052247|ref|YP_003130080.1|	-	0.0089	16.3	0.0	0.041	14.2	0.0	2.1	3	0	0	3	3	3	1	Purine	catabolism	regulatory	protein-like	family
FMN_dh	PF01070.18	gi|257052247|ref|YP_003130080.1|	-	0.071	12.1	0.1	0.13	11.3	0.1	1.5	1	1	0	1	1	1	0	FMN-dependent	dehydrogenase
IGPS	PF00218.21	gi|257052247|ref|YP_003130080.1|	-	0.22	10.7	0.0	0.28	10.3	0.0	1.3	1	0	0	1	1	1	0	Indole-3-glycerol	phosphate	synthase
DUF58	PF01882.18	gi|257052249|ref|YP_003130082.1|	-	8.2e-20	70.9	0.5	1.8e-19	69.8	0.5	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF58
DUF11	PF01345.18	gi|257052249|ref|YP_003130082.1|	-	1.8e-06	28.1	2.5	7.9e-06	26.1	2.5	2.1	1	1	0	1	1	1	1	Domain	of	unknown	function	DUF11
NPCBM_assoc	PF10633.9	gi|257052249|ref|YP_003130082.1|	-	0.00085	19.5	0.8	0.0063	16.7	0.4	2.4	2	0	0	2	2	2	1	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
TRAP_beta	PF05753.14	gi|257052249|ref|YP_003130082.1|	-	0.0079	15.6	0.0	0.012	15.0	0.0	1.2	1	0	0	1	1	1	1	Translocon-associated	protein	beta	(TRAPB)
CARDB	PF07705.11	gi|257052249|ref|YP_003130082.1|	-	0.047	13.9	0.0	0.18	12.1	0.0	2.0	2	0	0	2	2	2	0	CARDB
DUF4129	PF13559.6	gi|257052251|ref|YP_003130084.1|	-	6.1e-06	26.4	7.4	1.8e-05	24.9	7.4	1.8	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4129)
Trp_oprn_chp	PF09534.10	gi|257052251|ref|YP_003130084.1|	-	0.0045	16.8	0.2	0.0085	15.9	0.2	1.4	1	0	0	1	1	1	1	Tryptophan-associated	transmembrane	protein	(Trp_oprn_chp)
AAA_3	PF07726.11	gi|257052252|ref|YP_003130085.1|	-	1.2e-65	219.3	0.0	3.1e-65	217.9	0.0	1.7	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_2	PF17863.1	gi|257052252|ref|YP_003130085.1|	-	5e-21	74.3	0.7	1.1e-20	73.2	0.7	1.6	1	0	0	1	1	1	1	AAA	lid	domain
AAA_5	PF07728.14	gi|257052252|ref|YP_003130085.1|	-	3e-16	59.7	0.0	5.6e-16	58.8	0.0	1.5	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.29	gi|257052252|ref|YP_003130085.1|	-	1.7e-05	25.2	0.0	4.2e-05	24.0	0.0	1.7	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.26	gi|257052252|ref|YP_003130085.1|	-	6.2e-05	22.8	0.0	0.001	18.8	0.0	2.1	1	1	0	1	1	1	1	Sigma-54	interaction	domain
RuvB_N	PF05496.12	gi|257052252|ref|YP_003130085.1|	-	0.036	13.8	0.0	0.31	10.8	0.0	2.2	1	1	0	1	1	1	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
Mg_chelatase	PF01078.21	gi|257052252|ref|YP_003130085.1|	-	0.12	11.7	0.1	2.7	7.3	0.0	2.6	3	1	0	3	3	3	0	Magnesium	chelatase,	subunit	ChlI
MCM	PF00493.23	gi|257052252|ref|YP_003130085.1|	-	0.16	11.0	0.0	0.28	10.2	0.0	1.4	1	0	0	1	1	1	0	MCM	P-loop	domain
MLTD_N	PF06474.12	gi|257052253|ref|YP_003130086.1|	-	0.4	10.9	3.8	2.4	8.4	1.8	2.3	2	0	0	2	2	2	0	MltD	lipid	attachment	motif
DeoC	PF01791.9	gi|257052254|ref|YP_003130087.1|	-	3e-46	157.9	0.4	3.6e-46	157.7	0.4	1.1	1	0	0	1	1	1	1	DeoC/LacD	family	aldolase
AP_endonuc_2	PF01261.24	gi|257052254|ref|YP_003130087.1|	-	0.00021	20.8	0.1	0.00033	20.1	0.1	1.3	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
URO-D	PF01208.17	gi|257052254|ref|YP_003130087.1|	-	0.075	12.2	0.1	1.6	7.8	0.0	2.1	1	1	1	2	2	2	0	Uroporphyrinogen	decarboxylase	(URO-D)
TFIIB	PF00382.19	gi|257052255|ref|YP_003130088.1|	-	0.012	15.6	1.4	3.9	7.6	0.0	4.3	5	0	0	5	5	5	0	Transcription	factor	TFIIB	repeat
TrmB	PF01978.19	gi|257052255|ref|YP_003130088.1|	-	0.019	14.9	0.0	3.3	7.6	0.0	3.6	3	0	0	3	3	3	0	Sugar-specific	transcriptional	regulator	TrmB
DUF5585	PF17823.1	gi|257052255|ref|YP_003130088.1|	-	0.16	10.9	0.7	0.26	10.2	0.7	1.3	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5585)
DHQS	PF01959.16	gi|257052256|ref|YP_003130089.1|	-	1.1e-143	478.4	1.9	1.3e-143	478.2	1.9	1.0	1	0	0	1	1	1	1	3-dehydroquinate	synthase	II
Hint_2	PF13403.6	gi|257052256|ref|YP_003130089.1|	-	0.0047	17.2	4.1	0.044	14.1	0.1	3.1	4	0	0	4	4	4	1	Hint	domain
QRPTase_C	PF01729.19	gi|257052256|ref|YP_003130089.1|	-	0.0055	16.5	1.1	0.07	12.9	0.2	2.3	2	0	0	2	2	2	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
Hint	PF01079.20	gi|257052256|ref|YP_003130089.1|	-	0.015	14.8	0.0	0.87	9.1	0.0	2.4	2	0	0	2	2	2	0	Hint	module
NusG_II	PF07009.11	gi|257052256|ref|YP_003130089.1|	-	0.18	12.0	0.1	1.4	9.1	0.0	2.2	2	0	0	2	2	2	0	NusG	domain	II
zinc_ribbon_2	PF13240.6	gi|257052257|ref|YP_003130090.1|	-	1.5e-06	27.7	0.6	2.4e-06	27.1	0.6	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|257052257|ref|YP_003130090.1|	-	1.6e-05	24.1	1.2	2.6e-05	23.4	1.2	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.7	gi|257052257|ref|YP_003130090.1|	-	9.8e-05	22.3	0.7	0.00015	21.8	0.7	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
Prok-RING_1	PF14446.6	gi|257052257|ref|YP_003130090.1|	-	0.00025	20.9	1.1	0.00041	20.2	1.1	1.2	1	0	0	1	1	1	1	Prokaryotic	RING	finger	family	1
zf-NADH-PPase	PF09297.11	gi|257052257|ref|YP_003130090.1|	-	0.00087	18.9	1.2	0.019	14.6	0.5	2.2	2	0	0	2	2	2	1	NADH	pyrophosphatase	zinc	ribbon	domain
Rad50_zn_hook	PF04423.14	gi|257052257|ref|YP_003130090.1|	-	0.0027	17.5	0.3	0.048	13.5	0.0	2.2	2	0	0	2	2	2	1	Rad50	zinc	hook	motif
Nudix_N_2	PF14803.6	gi|257052257|ref|YP_003130090.1|	-	0.0054	16.6	0.6	1.5	8.8	0.1	2.4	2	0	0	2	2	2	1	Nudix	N-terminal
zinc_ribbon_15	PF17032.5	gi|257052257|ref|YP_003130090.1|	-	0.017	15.8	0.0	0.021	15.6	0.0	1.2	1	0	0	1	1	1	0	zinc-ribbon	family
Cys_rich_CPXG	PF14255.6	gi|257052257|ref|YP_003130090.1|	-	0.029	14.3	1.0	2.9	7.8	0.0	2.2	2	0	0	2	2	2	0	Cysteine-rich	CPXCG
DNA_ligase_ZBD	PF03119.16	gi|257052257|ref|YP_003130090.1|	-	0.037	14.1	0.6	1.7	8.8	0.1	2.4	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
UPF0547	PF10571.9	gi|257052257|ref|YP_003130090.1|	-	0.048	13.7	2.5	0.41	10.8	0.3	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
zinc-ribbons_6	PF07191.12	gi|257052257|ref|YP_003130090.1|	-	0.054	13.5	0.5	0.087	12.8	0.5	1.3	1	0	0	1	1	1	0	zinc-ribbons
OrfB_Zn_ribbon	PF07282.11	gi|257052257|ref|YP_003130090.1|	-	0.098	12.6	0.4	0.18	11.7	0.4	1.4	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
CarbpepA_inh	PF02977.15	gi|257052257|ref|YP_003130090.1|	-	0.12	12.1	2.7	0.21	11.4	2.7	1.3	1	0	0	1	1	1	0	Carboxypeptidase	A	inhibitor
zf-C4_Topoisom	PF01396.19	gi|257052257|ref|YP_003130090.1|	-	0.19	11.5	2.1	2.8	7.8	0.6	2.2	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
PLATZ	PF04640.14	gi|257052257|ref|YP_003130090.1|	-	0.2	12.3	0.1	0.31	11.7	0.1	1.3	1	0	0	1	1	1	0	PLATZ	transcription	factor
Zn-ribbon_8	PF09723.10	gi|257052257|ref|YP_003130090.1|	-	0.21	11.7	3.0	1.6	8.9	3.1	2.0	1	1	1	2	2	2	0	Zinc	ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|257052257|ref|YP_003130090.1|	-	0.29	10.7	2.9	0.82	9.2	2.9	1.8	1	1	0	1	1	1	0	TFIIB	zinc-binding
RecR	PF02132.15	gi|257052257|ref|YP_003130090.1|	-	0.37	10.4	3.3	0.18	11.4	0.8	1.7	2	0	0	2	2	2	0	RecR	protein
PhnA_Zn_Ribbon	PF08274.12	gi|257052257|ref|YP_003130090.1|	-	0.73	9.8	6.2	9	6.4	6.2	2.1	1	1	0	1	1	1	0	PhnA	Zinc-Ribbon
zf-IS66	PF13005.7	gi|257052257|ref|YP_003130090.1|	-	0.75	10.2	3.8	1.9	9.0	0.6	2.4	1	1	1	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
DHquinase_I	PF01487.15	gi|257052258|ref|YP_003130091.1|	-	8.3e-44	150.5	0.0	9.7e-44	150.3	0.0	1.0	1	0	0	1	1	1	1	Type	I	3-dehydroquinase
MarR_2	PF12802.7	gi|257052259|ref|YP_003130092.1|	-	1.1e-05	25.3	0.4	2.8e-05	23.9	0.1	1.8	2	0	0	2	2	2	1	MarR	family
HTH_IclR	PF09339.10	gi|257052259|ref|YP_003130092.1|	-	9.4e-05	22.1	0.1	0.00016	21.4	0.1	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
TrmB	PF01978.19	gi|257052259|ref|YP_003130092.1|	-	0.00012	21.9	0.0	0.0002	21.1	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.7	gi|257052259|ref|YP_003130092.1|	-	0.00024	21.1	0.0	0.0004	20.4	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR	PF01047.22	gi|257052259|ref|YP_003130092.1|	-	0.0011	18.9	0.0	0.0018	18.1	0.0	1.4	1	0	0	1	1	1	1	MarR	family
Rrf2	PF02082.20	gi|257052259|ref|YP_003130092.1|	-	0.014	15.7	0.0	0.023	15.0	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
NfeD	PF01957.18	gi|257052259|ref|YP_003130092.1|	-	0.023	15.0	0.0	0.03	14.7	0.0	1.3	1	0	0	1	1	1	0	NfeD-like	C-terminal,	partner-binding
Fe_dep_repress	PF01325.19	gi|257052259|ref|YP_003130092.1|	-	0.039	14.2	0.0	0.068	13.4	0.0	1.4	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_27	PF13463.6	gi|257052259|ref|YP_003130092.1|	-	0.039	14.4	0.0	0.058	13.9	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
GntR	PF00392.21	gi|257052259|ref|YP_003130092.1|	-	0.068	12.8	0.2	0.12	12.1	0.0	1.6	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
HTH_5	PF01022.20	gi|257052259|ref|YP_003130092.1|	-	0.069	13.0	0.0	0.11	12.4	0.0	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
BLACT_WH	PF17778.1	gi|257052259|ref|YP_003130092.1|	-	0.12	12.3	0.0	0.29	11.1	0.0	1.7	1	0	0	1	1	1	0	Beta-lactamase	associated	winged	helix	domain
DUF4071	PF13281.6	gi|257052259|ref|YP_003130092.1|	-	0.14	11.1	0.0	0.18	10.8	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4071)
UL42	PF17638.2	gi|257052260|ref|YP_003130093.1|	-	0.019	14.9	0.1	0.8	9.7	0.2	2.0	2	0	0	2	2	2	0	HCMV	UL42
PemK_toxin	PF02452.17	gi|257052260|ref|YP_003130093.1|	-	0.027	14.9	0.0	0.035	14.5	0.0	1.2	1	0	0	1	1	1	0	PemK-like,	MazF-like	toxin	of	type	II	toxin-antitoxin	system
PXA	PF02194.15	gi|257052260|ref|YP_003130093.1|	-	0.17	11.8	0.0	0.25	11.3	0.0	1.2	1	0	0	1	1	1	0	PXA	domain
N6_N4_Mtase	PF01555.18	gi|257052261|ref|YP_003130094.1|	-	3e-31	108.9	0.0	5e-31	108.2	0.0	1.3	1	0	0	1	1	1	1	DNA	methylase
UPF0020	PF01170.18	gi|257052261|ref|YP_003130094.1|	-	0.00016	21.5	0.0	0.56	9.9	0.0	2.3	2	0	0	2	2	2	2	Putative	RNA	methylase	family	UPF0020
Methyltransf_11	PF08241.12	gi|257052261|ref|YP_003130094.1|	-	0.061	14.0	0.1	9.1	7.0	0.0	3.1	3	1	0	3	3	3	0	Methyltransferase	domain
MCPsignal	PF00015.21	gi|257052262|ref|YP_003130095.1|	-	1.8e-50	171.1	50.9	2.3e-46	157.8	30.1	4.0	1	1	2	3	3	3	3	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
DUF948	PF06103.11	gi|257052262|ref|YP_003130095.1|	-	7e-07	29.4	34.2	0.0083	16.4	5.1	4.5	2	2	2	4	4	4	4	Bacterial	protein	of	unknown	function	(DUF948)
Laminin_II	PF06009.12	gi|257052262|ref|YP_003130095.1|	-	5.8e-05	23.1	41.4	0.05	13.6	1.5	4.2	2	2	2	4	4	4	3	Laminin	Domain	II
CorA	PF01544.18	gi|257052262|ref|YP_003130095.1|	-	0.0014	18.0	17.2	0.0048	16.3	4.5	2.1	2	0	0	2	2	2	2	CorA-like	Mg2+	transporter	protein
DUF1664	PF07889.12	gi|257052262|ref|YP_003130095.1|	-	0.0035	17.4	31.7	1.2	9.2	2.4	4.3	2	2	2	4	4	4	3	Protein	of	unknown	function	(DUF1664)
TPR_MLP1_2	PF07926.12	gi|257052262|ref|YP_003130095.1|	-	0.0046	17.0	9.4	0.0046	17.0	9.4	3.0	2	1	0	2	2	2	1	TPR/MLP1/MLP2-like	protein
Syntaxin-6_N	PF09177.11	gi|257052262|ref|YP_003130095.1|	-	0.014	16.0	26.8	0.017	15.7	2.2	4.0	2	2	2	4	4	4	0	Syntaxin	6,	N-terminal
BLOC1_2	PF10046.9	gi|257052262|ref|YP_003130095.1|	-	0.017	15.4	31.2	0.99	9.7	3.0	5.0	2	2	2	4	4	4	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
FlgN	PF05130.12	gi|257052262|ref|YP_003130095.1|	-	0.026	15.0	27.6	0.065	13.7	8.7	3.6	1	1	1	2	2	2	0	FlgN	protein
T7SS_ESX_EspC	PF10824.8	gi|257052262|ref|YP_003130095.1|	-	0.051	14.1	30.3	0.063	13.8	0.6	3.9	1	1	2	4	4	4	0	Excreted	virulence	factor	EspC,	type	VII	ESX	diderm
FUSC	PF04632.12	gi|257052262|ref|YP_003130095.1|	-	0.051	12.1	13.0	0.42	9.1	2.2	2.1	1	1	1	2	2	2	0	Fusaric	acid	resistance	protein	family
Spc7	PF08317.11	gi|257052262|ref|YP_003130095.1|	-	0.1	11.5	33.7	0.27	10.1	11.2	2.7	1	1	2	3	3	3	0	Spc7	kinetochore	protein
Syntaxin_2	PF14523.6	gi|257052262|ref|YP_003130095.1|	-	0.14	12.6	18.8	6.3	7.2	2.2	4.4	1	1	2	3	3	3	0	Syntaxin-like	protein
Goodbye	PF17109.5	gi|257052262|ref|YP_003130095.1|	-	0.15	12.6	14.1	18	5.8	0.0	4.4	2	2	1	4	4	4	0	fungal	STAND	N-terminal	Goodbye	domain
Med30	PF11315.8	gi|257052262|ref|YP_003130095.1|	-	0.2	11.9	12.2	0.19	12.0	2.2	2.8	1	1	2	3	3	3	0	Mediator	complex	subunit	30
Fzo_mitofusin	PF04799.13	gi|257052262|ref|YP_003130095.1|	-	0.23	11.0	22.0	0.49	9.9	2.2	3.9	2	2	2	4	4	4	0	fzo-like	conserved	region
Fib_alpha	PF08702.10	gi|257052262|ref|YP_003130095.1|	-	0.23	11.7	24.8	0.6	10.3	5.5	3.9	2	2	2	4	4	4	0	Fibrinogen	alpha/beta	chain	family
Mce4_CUP1	PF11887.8	gi|257052262|ref|YP_003130095.1|	-	0.25	10.8	20.1	0.44	10.0	4.9	2.9	1	1	1	3	3	3	0	Cholesterol	uptake	porter	CUP1	of	Mce4,	putative
COG2	PF06148.11	gi|257052262|ref|YP_003130095.1|	-	0.26	11.4	29.8	1.9	8.6	3.8	4.5	2	2	2	4	4	4	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Mod_r	PF07200.13	gi|257052262|ref|YP_003130095.1|	-	0.29	11.2	22.4	1.1	9.4	4.8	3.5	2	2	0	2	2	2	0	Modifier	of	rudimentary	(Mod(r))	protein
Sec34	PF04136.15	gi|257052262|ref|YP_003130095.1|	-	0.3	11.0	17.8	1.2	9.0	0.8	4.3	2	2	1	3	3	3	0	Sec34-like	family
HEPN_AbiU2	PF18734.1	gi|257052262|ref|YP_003130095.1|	-	0.31	10.5	3.8	0.31	10.5	0.2	2.6	2	2	0	2	2	2	0	AbiU2
Aminotran_1_2	PF00155.21	gi|257052262|ref|YP_003130095.1|	-	0.31	10.2	7.1	1.4	8.0	0.4	2.9	1	1	1	3	3	3	0	Aminotransferase	class	I	and	II
GAS	PF13851.6	gi|257052262|ref|YP_003130095.1|	-	0.45	9.8	20.1	0.3	10.4	3.8	2.5	2	1	0	2	2	2	0	Growth-arrest	specific	micro-tubule	binding
YtxH	PF12732.7	gi|257052262|ref|YP_003130095.1|	-	0.49	11.0	38.4	3.5	8.2	1.7	5.2	1	1	2	3	3	2	0	YtxH-like	protein
DASH_Dam1	PF08653.10	gi|257052262|ref|YP_003130095.1|	-	0.6	10.0	8.4	20	5.1	0.0	4.8	5	1	0	5	5	5	0	DASH	complex	subunit	Dam1
DUF4201	PF13870.6	gi|257052262|ref|YP_003130095.1|	-	0.73	9.5	8.0	0.097	12.4	0.5	2.6	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4201)
CheZ	PF04344.13	gi|257052262|ref|YP_003130095.1|	-	0.8	9.6	23.3	4.7	7.1	6.0	2.8	1	1	0	2	2	2	0	Chemotaxis	phosphatase,	CheZ
DUF2203	PF09969.9	gi|257052262|ref|YP_003130095.1|	-	1.2	9.9	27.0	3	8.6	4.2	3.7	1	1	1	3	3	3	0	Uncharacterized	conserved	protein	(DUF2203)
TMPIT	PF07851.13	gi|257052262|ref|YP_003130095.1|	-	1.5	8.0	19.9	1.9	7.7	4.4	3.0	1	1	2	3	3	3	0	TMPIT-like	protein
Alanine_zipper	PF11839.8	gi|257052262|ref|YP_003130095.1|	-	1.9	8.9	49.2	0.2	12.0	7.1	5.3	1	1	4	5	5	4	0	Alanine-zipper,	major	outer	membrane	lipoprotein
APG17	PF04108.12	gi|257052262|ref|YP_003130095.1|	-	2	7.5	28.1	9.7	5.2	12.3	2.5	1	1	1	2	2	2	0	Autophagy	protein	Apg17
HalX	PF08663.10	gi|257052262|ref|YP_003130095.1|	-	3.1	8.2	29.3	2.6	8.4	1.6	5.2	3	2	0	4	4	4	0	HalX	domain
Spectrin	PF00435.21	gi|257052262|ref|YP_003130095.1|	-	3.4	8.2	25.2	1.1	9.8	4.7	3.9	2	2	2	4	4	4	0	Spectrin	repeat
Cauli_AT	PF03233.13	gi|257052262|ref|YP_003130095.1|	-	3.5	7.5	18.8	3.4	7.6	3.3	3.7	1	1	4	5	5	5	0	Aphid	transmission	protein
Laminin_I	PF06008.14	gi|257052262|ref|YP_003130095.1|	-	3.8	7.2	35.1	6.5	6.4	2.3	3.9	1	1	1	3	3	3	0	Laminin	Domain	I
DUF812	PF05667.11	gi|257052262|ref|YP_003130095.1|	-	4	6.2	35.2	1.4	7.8	5.1	2.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF812)
HOOK	PF05622.12	gi|257052262|ref|YP_003130095.1|	-	4.1	5.4	29.3	1.8	6.6	17.1	2.1	1	1	1	2	2	2	0	HOOK	protein
ATG16	PF08614.11	gi|257052262|ref|YP_003130095.1|	-	4.2	7.5	30.4	3.7	7.7	15.2	2.2	1	1	1	2	2	2	0	Autophagy	protein	16	(ATG16)
DUF489	PF04356.12	gi|257052262|ref|YP_003130095.1|	-	4.6	7.2	15.0	7.1	6.6	4.9	3.4	2	2	0	2	2	2	0	Protein	of	unknown	function	(DUF489)
LOH1CR12	PF10158.9	gi|257052262|ref|YP_003130095.1|	-	4.7	7.2	14.9	1	9.4	3.6	3.1	1	1	2	3	3	3	0	Tumour	suppressor	protein
Med9	PF07544.13	gi|257052262|ref|YP_003130095.1|	-	5.3	7.2	15.9	4	7.6	2.0	4.4	2	2	2	4	4	4	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
V_ATPase_I	PF01496.19	gi|257052262|ref|YP_003130095.1|	-	5.4	4.8	22.2	0.89	7.4	12.0	2.1	1	1	1	2	2	2	0	V-type	ATPase	116kDa	subunit	family
FlaC_arch	PF05377.11	gi|257052262|ref|YP_003130095.1|	-	6	7.3	30.5	0.41	11.1	2.3	5.7	3	3	2	5	5	5	0	Flagella	accessory	protein	C	(FlaC)
Seryl_tRNA_N	PF02403.22	gi|257052262|ref|YP_003130095.1|	-	7.1	6.9	34.4	1.8	8.9	4.4	4.2	1	1	4	5	5	5	0	Seryl-tRNA	synthetase	N-terminal	domain
VPS38	PF17649.1	gi|257052262|ref|YP_003130095.1|	-	7.7	5.3	13.4	0.44	9.4	3.7	2.3	2	0	0	2	2	2	0	Vacuolar	protein	sorting	38
Spidroin_MaSp	PF11260.8	gi|257052262|ref|YP_003130095.1|	-	7.8	6.9	15.4	20	5.5	6.3	3.9	4	1	1	5	5	4	0	Major	ampullate	spidroin	1	and	2
Dor1	PF04124.12	gi|257052262|ref|YP_003130095.1|	-	7.8	5.1	17.8	1.5	7.4	3.5	2.8	1	1	1	2	2	2	0	Dor1-like	family
Kre28	PF17097.5	gi|257052262|ref|YP_003130095.1|	-	8.4	5.2	27.9	7.2	5.5	11.2	2.6	1	1	1	2	2	2	0	Spindle	pole	body	component
DUF3450	PF11932.8	gi|257052262|ref|YP_003130095.1|	-	8.7	5.6	38.9	3.5	6.9	7.0	3.9	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF3450)
Prominin	PF05478.11	gi|257052262|ref|YP_003130095.1|	-	9	4.1	17.2	1.8e+02	-0.2	17.3	2.0	1	1	0	1	1	1	0	Prominin
TFIIB	PF00382.19	gi|257052263|ref|YP_003130096.1|	-	4.2e-38	129.2	0.2	8.7e-18	64.1	0.0	2.2	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|257052263|ref|YP_003130096.1|	-	1.2e-16	59.9	4.3	2e-16	59.2	3.3	2.0	2	0	0	2	2	2	1	TFIIB	zinc-binding
Sigma70_r4	PF04545.16	gi|257052263|ref|YP_003130096.1|	-	0.015	14.8	0.1	0.32	10.5	0.1	2.8	2	0	0	2	2	2	0	Sigma-70,	region	4
OrfB_Zn_ribbon	PF07282.11	gi|257052263|ref|YP_003130096.1|	-	0.019	14.9	1.1	0.049	13.6	1.1	1.6	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Anti-TRAP	PF15777.5	gi|257052263|ref|YP_003130096.1|	-	0.021	14.8	0.3	0.041	13.9	0.3	1.5	1	0	0	1	1	1	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
Cyclin_C	PF02984.19	gi|257052263|ref|YP_003130096.1|	-	0.024	14.7	0.0	1.1	9.3	0.0	2.2	2	0	0	2	2	2	0	Cyclin,	C-terminal	domain
A2L_zn_ribbon	PF08792.10	gi|257052263|ref|YP_003130096.1|	-	0.11	12.2	0.8	0.2	11.4	0.8	1.4	1	0	0	1	1	1	0	A2L	zinc	ribbon	domain
HTH_Tnp_ISL3	PF13542.6	gi|257052263|ref|YP_003130096.1|	-	0.28	10.6	1.2	0.49	9.9	0.2	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	transposase	family	ISL3
Nnf1	PF03980.14	gi|257052263|ref|YP_003130096.1|	-	0.81	10.1	4.5	5.1	7.5	1.0	2.7	2	2	0	2	2	2	0	Nnf1
LPG_synthase_TM	PF03706.13	gi|257052264|ref|YP_003130097.1|	-	2.8e-36	125.6	29.2	3.7e-36	125.2	29.2	1.2	1	0	0	1	1	1	1	Lysylphosphatidylglycerol	synthase	TM	region
Glycos_transf_2	PF00535.26	gi|257052264|ref|YP_003130097.1|	-	4.2e-30	104.8	0.0	6.3e-30	104.2	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|257052264|ref|YP_003130097.1|	-	1.9e-09	37.8	0.6	4.6e-09	36.5	0.6	1.6	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.6	gi|257052264|ref|YP_003130097.1|	-	0.065	13.8	0.2	0.16	12.5	0.1	1.8	2	0	0	2	2	2	0	Glycosyl	transferase	family	2
MFS_1	PF07690.16	gi|257052265|ref|YP_003130098.1|	-	1.9e-44	152.0	52.5	8.6e-31	107.1	23.3	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.7	gi|257052265|ref|YP_003130098.1|	-	4.9e-10	38.8	3.9	1e-07	31.2	4.0	2.3	1	1	0	1	1	1	1	MFS_1	like	family
Sugar_tr	PF00083.24	gi|257052265|ref|YP_003130098.1|	-	9.4e-08	31.3	13.9	0.00023	20.2	5.7	2.3	2	0	0	2	2	2	2	Sugar	(and	other)	transporter
LacY_symp	PF01306.19	gi|257052265|ref|YP_003130098.1|	-	8.3e-06	24.8	1.0	8.3e-06	24.8	1.0	2.4	2	1	0	2	2	2	1	LacY	proton/sugar	symporter
TRI12	PF06609.13	gi|257052265|ref|YP_003130098.1|	-	0.0055	15.2	11.9	0.045	12.2	1.5	2.9	2	1	1	3	3	3	2	Fungal	trichothecene	efflux	pump	(TRI12)
MFS_5	PF05631.14	gi|257052265|ref|YP_003130098.1|	-	0.016	14.2	0.2	0.016	14.2	0.2	2.0	2	1	0	2	2	2	0	Sugar-tranasporters,	12	TM
DUF4781	PF16013.5	gi|257052265|ref|YP_003130098.1|	-	2.3	6.9	5.9	5.5	5.7	5.9	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4781)
MFS_4	PF06779.14	gi|257052265|ref|YP_003130098.1|	-	4.4	6.5	27.8	0.37	10.0	12.5	2.9	2	1	1	3	3	3	0	Uncharacterised	MFS-type	transporter	YbfB
Radical_SAM	PF04055.21	gi|257052266|ref|YP_003130099.1|	-	1.5e-15	57.9	0.0	1.3e-13	51.6	0.0	3.1	4	0	0	4	4	4	1	Radical	SAM	superfamily
HHH_3	PF12836.7	gi|257052266|ref|YP_003130099.1|	-	1.9e-06	28.0	0.0	4.9e-06	26.7	0.0	1.6	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
HHH	PF00633.23	gi|257052266|ref|YP_003130099.1|	-	2.4e-06	27.1	0.0	6.8e-06	25.7	0.0	1.8	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
PsbU	PF06514.11	gi|257052266|ref|YP_003130099.1|	-	0.0029	17.6	0.0	0.0083	16.1	0.0	1.8	1	0	0	1	1	1	1	Photosystem	II	12	kDa	extrinsic	protein	(PsbU)
HHH_5	PF14520.6	gi|257052266|ref|YP_003130099.1|	-	0.0059	17.2	0.0	0.013	16.1	0.0	1.6	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
HHH_2	PF12826.7	gi|257052266|ref|YP_003130099.1|	-	0.13	12.4	0.1	0.48	10.6	0.0	1.9	2	0	0	2	2	2	0	Helix-hairpin-helix	motif
HSP20	PF00011.21	gi|257052268|ref|YP_003130101.1|	-	4.3e-05	23.6	0.0	7.2e-05	22.9	0.0	1.4	1	0	0	1	1	1	1	Hsp20/alpha	crystallin	family
Astro_capsid_p	PF12226.8	gi|257052268|ref|YP_003130101.1|	-	5.4	6.1	7.5	7.1	5.7	7.5	1.1	1	0	0	1	1	1	0	Turkey	astrovirus	capsid	protein
NUDIX	PF00293.28	gi|257052269|ref|YP_003130102.1|	-	1.2e-13	51.3	0.1	1.7e-13	50.8	0.1	1.2	1	0	0	1	1	1	1	NUDIX	domain
TF_Zn_Ribbon	PF08271.12	gi|257052272|ref|YP_003130105.1|	-	0.015	14.8	2.7	0.023	14.2	2.7	1.3	1	0	0	1	1	1	0	TFIIB	zinc-binding
PhnA_Zn_Ribbon	PF08274.12	gi|257052272|ref|YP_003130105.1|	-	0.019	14.9	1.2	0.053	13.5	1.2	1.6	1	1	1	2	2	2	0	PhnA	Zinc-Ribbon
DZR	PF12773.7	gi|257052272|ref|YP_003130105.1|	-	0.022	14.8	0.9	0.033	14.2	0.9	1.4	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-NADH-PPase	PF09297.11	gi|257052272|ref|YP_003130105.1|	-	0.068	12.8	0.2	0.068	12.8	0.2	1.8	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
Prok-RING_1	PF14446.6	gi|257052272|ref|YP_003130105.1|	-	0.11	12.4	2.5	0.21	11.6	2.5	1.5	1	1	0	1	1	1	0	Prokaryotic	RING	finger	family	1
DHH	PF01368.20	gi|257052273|ref|YP_003130106.1|	-	6.5e-11	42.4	0.0	1.1e-10	41.7	0.0	1.4	1	0	0	1	1	1	1	DHH	family
DHHA1	PF02272.19	gi|257052273|ref|YP_003130106.1|	-	9.2e-09	35.8	0.2	2.1e-08	34.7	0.2	1.6	1	0	0	1	1	1	1	DHHA1	domain
DUF4381	PF14316.6	gi|257052273|ref|YP_003130106.1|	-	0.072	13.3	0.1	0.12	12.6	0.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4381)
CcmD	PF04995.14	gi|257052273|ref|YP_003130106.1|	-	0.14	12.3	5.0	0.25	11.4	2.3	2.6	2	0	0	2	2	2	0	Heme	exporter	protein	D	(CcmD)
SKG6	PF08693.10	gi|257052273|ref|YP_003130106.1|	-	1.1	8.7	6.5	3	7.3	6.5	1.8	1	0	0	1	1	1	0	Transmembrane	alpha-helix	domain
DAP10	PF07213.11	gi|257052273|ref|YP_003130106.1|	-	3.3	7.7	5.4	2	8.5	0.4	2.9	3	0	0	3	3	3	0	DAP10	membrane	protein
NAD_binding_10	PF13460.6	gi|257052274|ref|YP_003130107.1|	-	6.9e-13	48.9	0.1	9.6e-13	48.4	0.1	1.2	1	0	0	1	1	1	1	NAD(P)H-binding
Epimerase	PF01370.21	gi|257052274|ref|YP_003130107.1|	-	4.4e-11	42.7	0.0	1.7e-10	40.8	0.0	1.8	1	1	1	2	2	2	1	NAD	dependent	epimerase/dehydratase	family
TrkA_N	PF02254.18	gi|257052274|ref|YP_003130107.1|	-	1.2e-05	25.6	0.1	2e-05	24.8	0.1	1.4	1	0	0	1	1	1	1	TrkA-N	domain
3Beta_HSD	PF01073.19	gi|257052274|ref|YP_003130107.1|	-	7.5e-05	21.9	0.0	0.00014	21.0	0.0	1.4	2	0	0	2	2	2	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
F420_oxidored	PF03807.17	gi|257052274|ref|YP_003130107.1|	-	0.00027	21.5	0.1	0.00046	20.7	0.1	1.4	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
ApbA	PF02558.16	gi|257052274|ref|YP_003130107.1|	-	0.00038	20.1	0.1	0.00061	19.5	0.1	1.3	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
UDPG_MGDP_dh_N	PF03721.14	gi|257052274|ref|YP_003130107.1|	-	0.00056	19.5	0.1	0.00091	18.8	0.1	1.3	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Pyr_redox	PF00070.27	gi|257052274|ref|YP_003130107.1|	-	0.00062	20.3	0.2	0.002	18.6	0.4	1.8	2	0	0	2	2	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_2	PF03446.15	gi|257052274|ref|YP_003130107.1|	-	0.0061	16.7	0.0	0.0098	16.1	0.0	1.4	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Pyr_redox_2	PF07992.14	gi|257052274|ref|YP_003130107.1|	-	0.0065	15.7	0.6	0.0099	15.1	0.6	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
GDP_Man_Dehyd	PF16363.5	gi|257052274|ref|YP_003130107.1|	-	0.0073	15.7	0.0	1.7	8.0	0.0	2.2	2	0	0	2	2	2	2	GDP-mannose	4,6	dehydratase
DUF1731	PF08338.11	gi|257052274|ref|YP_003130107.1|	-	0.011	15.5	0.1	0.023	14.5	0.1	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1731)
3HCDH_N	PF02737.18	gi|257052274|ref|YP_003130107.1|	-	0.019	14.8	0.0	0.028	14.3	0.0	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
RmlD_sub_bind	PF04321.17	gi|257052274|ref|YP_003130107.1|	-	0.031	13.4	0.2	0.48	9.5	0.1	2.4	2	1	0	2	2	2	0	RmlD	substrate	binding	domain
ThiF	PF00899.21	gi|257052274|ref|YP_003130107.1|	-	0.097	12.0	1.0	0.15	11.4	1.0	1.3	1	0	0	1	1	1	0	ThiF	family
IlvN	PF07991.12	gi|257052274|ref|YP_003130107.1|	-	0.14	11.7	0.1	0.21	11.2	0.1	1.3	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
Rossmann-like	PF10727.9	gi|257052274|ref|YP_003130107.1|	-	0.14	12.0	0.2	0.26	11.2	0.2	1.5	1	0	0	1	1	1	0	Rossmann-like	domain
adh_short	PF00106.25	gi|257052274|ref|YP_003130107.1|	-	0.19	11.1	0.0	0.5	9.8	0.0	1.6	2	0	0	2	2	2	0	short	chain	dehydrogenase
CnrY	PF17524.2	gi|257052275|ref|YP_003130108.1|	-	0.04	14.1	0.3	0.19	12.0	0.0	2.1	1	1	2	3	3	3	0	Anti-sigma	factor	CnrY
Tubulin	PF00091.25	gi|257052276|ref|YP_003130109.1|	-	3.5e-27	95.9	0.0	8.9e-27	94.6	0.0	1.7	1	1	0	1	1	1	1	Tubulin/FtsZ	family,	GTPase	domain
Tubulin_2	PF13809.6	gi|257052276|ref|YP_003130109.1|	-	6e-05	22.4	1.1	9.7e-05	21.7	0.2	1.7	1	1	1	2	2	2	1	Tubulin	like
T2SSF	PF00482.23	gi|257052276|ref|YP_003130109.1|	-	0.049	13.6	2.2	0.66	9.9	0.6	3.0	3	1	0	3	3	3	0	Type	II	secretion	system	(T2SS),	protein	F
ABC_tran_CTD	PF16326.5	gi|257052277|ref|YP_003130110.1|	-	0.026	14.8	1.8	0.43	10.9	0.2	2.5	2	0	0	2	2	2	0	ABC	transporter	C-terminal	domain
YvrJ	PF12841.7	gi|257052277|ref|YP_003130110.1|	-	0.16	11.5	0.4	0.28	10.7	0.4	1.3	1	0	0	1	1	1	0	YvrJ	protein	family
Phosphodiest	PF01663.22	gi|257052278|ref|YP_003130111.1|	-	1.1e-58	199.5	0.1	1.3e-58	199.3	0.1	1.0	1	0	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF2063	PF09836.9	gi|257052278|ref|YP_003130111.1|	-	0.059	13.6	0.2	0.11	12.8	0.2	1.5	1	0	0	1	1	1	0	Putative	DNA-binding	domain
Pyrophosphatase	PF00719.19	gi|257052280|ref|YP_003130113.1|	-	4.1e-52	176.2	0.5	4.7e-52	176.0	0.5	1.0	1	0	0	1	1	1	1	Inorganic	pyrophosphatase
PadR	PF03551.14	gi|257052281|ref|YP_003130114.1|	-	1.1e-14	54.1	0.8	1.7e-14	53.5	0.8	1.3	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
Rio2_N	PF09202.11	gi|257052281|ref|YP_003130114.1|	-	0.0037	17.5	0.1	0.0066	16.6	0.1	1.4	1	1	0	1	1	1	1	Rio2,	N-terminal
HTH_45	PF14947.6	gi|257052281|ref|YP_003130114.1|	-	0.0053	16.7	0.1	0.0093	15.9	0.1	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_27	PF13463.6	gi|257052281|ref|YP_003130114.1|	-	0.011	16.3	0.0	0.015	15.8	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
RVT_3	PF13456.6	gi|257052283|ref|YP_003130116.1|	-	2.1e-27	95.4	0.0	5.1e-27	94.1	0.0	1.6	2	0	0	2	2	2	1	Reverse	transcriptase-like
RNase_H	PF00075.24	gi|257052283|ref|YP_003130116.1|	-	1.3e-14	54.6	0.0	4.4e-14	52.9	0.0	1.8	1	1	0	1	1	1	1	RNase	H
Mac	PF12464.8	gi|257052283|ref|YP_003130116.1|	-	0.29	11.4	1.3	0.36	11.1	0.2	1.7	2	0	0	2	2	2	0	Maltose	acetyltransferase
TrkH	PF02386.16	gi|257052284|ref|YP_003130117.1|	-	5e-67	226.5	14.5	1.4e-66	225.0	14.5	1.5	1	1	0	1	1	1	1	Cation	transport	protein
TrkA_N	PF02254.18	gi|257052285|ref|YP_003130118.1|	-	2.1e-48	163.4	15.6	9.1e-26	90.4	4.9	3.5	4	0	0	4	4	4	2	TrkA-N	domain
TrkA_C	PF02080.21	gi|257052285|ref|YP_003130118.1|	-	1.7e-25	88.6	6.5	7.6e-12	44.9	0.6	3.8	3	0	0	3	3	3	2	TrkA-C	domain
NAD_binding_7	PF13241.6	gi|257052285|ref|YP_003130118.1|	-	8.8e-08	32.5	6.4	0.00038	20.8	1.2	3.4	2	1	1	3	3	3	2	Putative	NAD(P)-binding
Shikimate_DH	PF01488.20	gi|257052285|ref|YP_003130118.1|	-	1.2e-07	31.9	0.2	0.0067	16.5	0.2	2.6	2	1	0	2	2	2	2	Shikimate	/	quinate	5-dehydrogenase
FAD_binding_3	PF01494.19	gi|257052285|ref|YP_003130118.1|	-	3.3e-06	26.6	2.6	0.0077	15.5	0.0	2.8	3	0	0	3	3	3	2	FAD	binding	domain
Sacchrp_dh_NADP	PF03435.18	gi|257052285|ref|YP_003130118.1|	-	4.5e-06	27.0	5.8	0.00044	20.5	1.3	2.9	3	0	0	3	3	3	2	Saccharopine	dehydrogenase	NADP	binding	domain
3HCDH_N	PF02737.18	gi|257052285|ref|YP_003130118.1|	-	0.00025	21.0	1.4	0.0038	17.1	0.3	2.5	3	0	0	3	3	3	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Castor_Poll_mid	PF06241.12	gi|257052285|ref|YP_003130118.1|	-	0.0006	19.7	0.0	0.99	9.4	0.0	2.6	2	0	0	2	2	2	2	Castor	and	Pollux,	part	of	voltage-gated	ion	channel
NAD_binding_2	PF03446.15	gi|257052285|ref|YP_003130118.1|	-	0.0013	18.9	0.6	0.023	14.9	0.5	2.5	2	0	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
UDPG_MGDP_dh_N	PF03721.14	gi|257052285|ref|YP_003130118.1|	-	0.0014	18.3	0.3	0.0014	18.3	0.3	1.8	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
F420_oxidored	PF03807.17	gi|257052285|ref|YP_003130118.1|	-	0.0015	19.0	2.2	0.029	15.0	0.1	3.4	3	2	0	3	3	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
Pyr_redox_2	PF07992.14	gi|257052285|ref|YP_003130118.1|	-	0.0017	17.6	1.3	1.6	7.9	0.0	2.5	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
HEM4	PF02602.15	gi|257052285|ref|YP_003130118.1|	-	0.0021	17.5	0.1	0.004	16.5	0.1	1.5	1	0	0	1	1	1	1	Uroporphyrinogen-III	synthase	HemD
ThiS	PF02597.20	gi|257052285|ref|YP_003130118.1|	-	0.0039	17.8	2.4	3.4	8.4	0.2	4.1	3	1	0	3	3	3	1	ThiS	family
ApbA	PF02558.16	gi|257052285|ref|YP_003130118.1|	-	0.0068	16.1	0.1	0.18	11.5	0.0	2.6	2	0	0	2	2	2	1	Ketopantoate	reductase	PanE/ApbA
GFO_IDH_MocA	PF01408.22	gi|257052285|ref|YP_003130118.1|	-	0.012	16.4	1.9	4.7	8.1	0.0	3.0	3	1	0	3	3	2	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Pyr_redox	PF00070.27	gi|257052285|ref|YP_003130118.1|	-	0.048	14.2	3.7	5.9	7.5	0.6	3.3	3	0	0	3	3	3	0	Pyridine	nucleotide-disulphide	oxidoreductase
DUF1188	PF06690.11	gi|257052285|ref|YP_003130118.1|	-	0.054	13.0	0.1	0.12	11.9	0.1	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1188)
DAO	PF01266.24	gi|257052285|ref|YP_003130118.1|	-	0.063	12.8	4.4	0.16	11.5	0.9	2.8	2	1	1	3	3	3	0	FAD	dependent	oxidoreductase
ThiF	PF00899.21	gi|257052285|ref|YP_003130118.1|	-	0.15	11.4	1.0	0.66	9.3	0.1	2.3	2	0	0	2	2	2	0	ThiF	family
TrkA_C	PF02080.21	gi|257052286|ref|YP_003130119.1|	-	2.4e-11	43.3	0.3	5e-11	42.3	0.3	1.5	1	0	0	1	1	1	1	TrkA-C	domain
HTH_24	PF13412.6	gi|257052286|ref|YP_003130119.1|	-	7.6e-09	35.0	0.3	1.5e-08	34.1	0.3	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|257052286|ref|YP_003130119.1|	-	1.2e-08	34.7	0.7	2.6e-08	33.5	0.7	1.7	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.12	gi|257052286|ref|YP_003130119.1|	-	1.3e-05	25.0	0.1	3.3e-05	23.7	0.1	1.7	1	0	0	1	1	1	1	HTH	domain
MarR_2	PF12802.7	gi|257052286|ref|YP_003130119.1|	-	0.00038	20.3	0.1	0.0023	17.8	0.1	2.1	2	0	0	2	2	2	1	MarR	family
HTH_20	PF12840.7	gi|257052286|ref|YP_003130119.1|	-	0.001	19.1	0.0	0.0022	18.0	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_28	PF13518.6	gi|257052286|ref|YP_003130119.1|	-	0.0012	18.9	0.2	0.0028	17.7	0.2	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|257052286|ref|YP_003130119.1|	-	0.003	17.4	0.0	0.0052	16.6	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
GntR	PF00392.21	gi|257052286|ref|YP_003130119.1|	-	0.0057	16.3	0.2	0.017	14.8	0.2	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_DeoR	PF08220.12	gi|257052286|ref|YP_003130119.1|	-	0.013	15.2	0.0	0.028	14.2	0.0	1.6	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
MarR	PF01047.22	gi|257052286|ref|YP_003130119.1|	-	0.016	15.1	0.0	0.026	14.4	0.0	1.4	1	0	0	1	1	1	0	MarR	family
Rrf2	PF02082.20	gi|257052286|ref|YP_003130119.1|	-	0.018	15.4	0.0	0.04	14.3	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_IclR	PF09339.10	gi|257052286|ref|YP_003130119.1|	-	0.031	14.1	0.1	0.072	12.9	0.1	1.6	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_CodY	PF08222.11	gi|257052286|ref|YP_003130119.1|	-	0.05	13.2	0.1	0.18	11.4	0.0	1.9	2	0	0	2	2	2	0	CodY	helix-turn-helix	domain
Sigma70_r4_2	PF08281.12	gi|257052286|ref|YP_003130119.1|	-	0.08	12.6	0.3	0.21	11.3	0.3	1.8	1	1	0	1	1	1	0	Sigma-70,	region	4
DDRGK	PF09756.9	gi|257052286|ref|YP_003130119.1|	-	0.11	12.1	0.0	0.16	11.5	0.0	1.2	1	0	0	1	1	1	0	DDRGK	domain
Fe_dep_repress	PF01325.19	gi|257052286|ref|YP_003130119.1|	-	0.15	12.3	0.0	0.29	11.3	0.0	1.5	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
p25-alpha	PF05517.12	gi|257052287|ref|YP_003130120.1|	-	0.023	14.9	0.0	0.029	14.5	0.0	1.2	1	0	0	1	1	1	0	p25-alpha
Usp	PF00582.26	gi|257052288|ref|YP_003130121.1|	-	1.1e-12	48.6	2.4	1.6e-12	48.2	2.4	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
CcdB	PF01845.17	gi|257052288|ref|YP_003130121.1|	-	0.095	12.9	0.0	0.16	12.2	0.0	1.5	1	0	0	1	1	1	0	CcdB	protein
Adeno_PIX	PF03955.14	gi|257052288|ref|YP_003130121.1|	-	0.4	10.9	4.0	0.49	10.6	0.2	2.4	1	1	0	2	2	2	0	Adenovirus	hexon-associated	protein	(IX)
TrkA_N	PF02254.18	gi|257052289|ref|YP_003130122.1|	-	2.5e-27	95.4	1.5	4.3e-27	94.7	1.5	1.4	1	0	0	1	1	1	1	TrkA-N	domain
TrkA_C	PF02080.21	gi|257052289|ref|YP_003130122.1|	-	9.3e-15	54.2	1.2	3.9e-13	49.0	0.1	2.4	2	0	0	2	2	2	1	TrkA-C	domain
F420_oxidored	PF03807.17	gi|257052289|ref|YP_003130122.1|	-	1.1e-06	29.1	0.2	3.1e-06	27.7	0.2	1.8	1	1	1	2	2	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
Sacchrp_dh_NADP	PF03435.18	gi|257052289|ref|YP_003130122.1|	-	1.5e-06	28.5	0.3	2.4e-06	27.8	0.3	1.3	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
NAD_binding_10	PF13460.6	gi|257052289|ref|YP_003130122.1|	-	3.1e-05	23.9	1.4	8e-05	22.6	1.4	1.5	1	1	0	1	1	1	1	NAD(P)H-binding
Shikimate_DH	PF01488.20	gi|257052289|ref|YP_003130122.1|	-	5.3e-05	23.3	0.2	9.5e-05	22.5	0.2	1.4	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
AlaDh_PNT_C	PF01262.21	gi|257052289|ref|YP_003130122.1|	-	0.00014	21.3	1.2	0.0002	20.7	1.2	1.2	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
NAD_binding_7	PF13241.6	gi|257052289|ref|YP_003130122.1|	-	0.00015	22.1	0.2	0.00028	21.3	0.2	1.4	1	0	0	1	1	1	1	Putative	NAD(P)-binding
XdhC_C	PF13478.6	gi|257052289|ref|YP_003130122.1|	-	0.00018	22.0	0.1	0.00029	21.3	0.1	1.4	1	0	0	1	1	1	1	XdhC	Rossmann	domain
3HCDH_N	PF02737.18	gi|257052289|ref|YP_003130122.1|	-	0.00044	20.2	0.2	0.00066	19.6	0.2	1.3	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Pyr_redox	PF00070.27	gi|257052289|ref|YP_003130122.1|	-	0.0012	19.4	0.4	0.0037	17.8	0.3	1.9	1	1	1	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_2	PF07992.14	gi|257052289|ref|YP_003130122.1|	-	0.0015	17.8	0.4	0.0041	16.4	0.2	1.7	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_2	PF03446.15	gi|257052289|ref|YP_003130122.1|	-	0.0088	16.2	0.1	0.02	15.0	0.1	1.5	1	1	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
2-Hacid_dh_C	PF02826.19	gi|257052289|ref|YP_003130122.1|	-	0.017	14.4	0.0	0.035	13.5	0.0	1.6	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
UDPG_MGDP_dh_N	PF03721.14	gi|257052289|ref|YP_003130122.1|	-	0.022	14.3	0.9	0.25	10.9	0.1	2.2	1	1	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
FAD_binding_3	PF01494.19	gi|257052289|ref|YP_003130122.1|	-	0.022	14.0	0.2	0.037	13.3	0.2	1.5	1	1	0	1	1	1	0	FAD	binding	domain
Peripla_BP_3	PF13377.6	gi|257052289|ref|YP_003130122.1|	-	0.026	14.9	0.4	0.052	13.9	0.2	1.6	1	1	1	2	2	2	0	Periplasmic	binding	protein-like	domain
GFO_IDH_MocA	PF01408.22	gi|257052289|ref|YP_003130122.1|	-	0.027	15.3	0.2	0.046	14.5	0.2	1.6	1	1	0	1	1	1	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
NmrA	PF05368.13	gi|257052289|ref|YP_003130122.1|	-	0.03	13.9	0.4	0.048	13.2	0.4	1.2	1	0	0	1	1	1	0	NmrA-like	family
ApbA	PF02558.16	gi|257052289|ref|YP_003130122.1|	-	0.055	13.1	0.1	0.066	12.8	0.1	1.2	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
adh_short	PF00106.25	gi|257052289|ref|YP_003130122.1|	-	0.071	12.5	0.3	0.1	12.0	0.3	1.3	1	0	0	1	1	1	0	short	chain	dehydrogenase
PglD_N	PF17836.1	gi|257052289|ref|YP_003130122.1|	-	0.099	13.3	0.0	0.21	12.2	0.0	1.6	1	0	0	1	1	1	0	PglD	N-terminal	domain
LYTB	PF02401.18	gi|257052289|ref|YP_003130122.1|	-	0.1	11.8	0.3	0.74	9.0	0.1	2.0	1	1	1	2	2	2	0	LytB	protein
Epimerase	PF01370.21	gi|257052289|ref|YP_003130122.1|	-	0.12	11.8	0.1	0.18	11.2	0.1	1.2	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
Usp	PF00582.26	gi|257052290|ref|YP_003130123.1|	-	3e-07	31.0	0.7	4.8e-07	30.4	0.7	1.3	1	0	0	1	1	1	1	Universal	stress	protein	family
DUF3323	PF11796.8	gi|257052290|ref|YP_003130123.1|	-	0.036	14.0	0.1	0.044	13.7	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	N-terminus	(DUF3323)
AA_permease_2	PF13520.6	gi|257052291|ref|YP_003130124.1|	-	6.4e-54	183.4	39.5	8.4e-54	183.0	39.5	1.1	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.21	gi|257052291|ref|YP_003130124.1|	-	1.9e-43	148.8	44.9	3.3e-43	148.0	44.9	1.3	1	1	0	1	1	1	1	Amino	acid	permease
Usp	PF00582.26	gi|257052291|ref|YP_003130124.1|	-	6.3e-27	94.8	16.2	4.7e-16	59.6	6.4	2.3	2	0	0	2	2	2	2	Universal	stress	protein	family
Spore_permease	PF03845.13	gi|257052291|ref|YP_003130124.1|	-	2.3e-06	26.7	8.2	2.3e-06	26.7	8.2	2.3	2	1	0	2	2	2	1	Spore	germination	protein
DNA_topoisoIV	PF00521.20	gi|257052291|ref|YP_003130124.1|	-	0.14	11.1	0.1	0.22	10.4	0.1	1.2	1	0	0	1	1	1	0	DNA	gyrase/topoisomerase	IV,	subunit	A
TrkA_N	PF02254.18	gi|257052292|ref|YP_003130125.1|	-	1.7e-25	89.5	3.2	2e-25	89.3	1.7	1.8	2	0	0	2	2	2	1	TrkA-N	domain
TrkA_C	PF02080.21	gi|257052292|ref|YP_003130125.1|	-	2.6e-16	59.2	0.9	3.8e-15	55.5	0.1	2.3	2	0	0	2	2	2	1	TrkA-C	domain
F420_oxidored	PF03807.17	gi|257052292|ref|YP_003130125.1|	-	1.4e-06	28.8	0.9	1.7e-05	25.3	0.2	2.5	2	1	1	3	3	3	1	NADP	oxidoreductase	coenzyme	F420-dependent
Sacchrp_dh_NADP	PF03435.18	gi|257052292|ref|YP_003130125.1|	-	0.00013	22.3	0.1	0.00024	21.4	0.1	1.6	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
XdhC_C	PF13478.6	gi|257052292|ref|YP_003130125.1|	-	0.00039	20.9	0.1	0.00083	19.9	0.1	1.6	1	0	0	1	1	1	1	XdhC	Rossmann	domain
3HCDH_N	PF02737.18	gi|257052292|ref|YP_003130125.1|	-	0.00093	19.1	0.1	0.0015	18.5	0.1	1.4	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_7	PF13241.6	gi|257052292|ref|YP_003130125.1|	-	0.0013	19.2	0.6	0.0035	17.8	0.1	1.8	2	0	0	2	2	2	1	Putative	NAD(P)-binding
AlaDh_PNT_C	PF01262.21	gi|257052292|ref|YP_003130125.1|	-	0.002	17.5	0.8	0.0034	16.7	0.8	1.3	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
Pyr_redox	PF00070.27	gi|257052292|ref|YP_003130125.1|	-	0.0047	17.4	0.1	0.023	15.3	0.1	2.1	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Shikimate_DH	PF01488.20	gi|257052292|ref|YP_003130125.1|	-	0.0054	16.8	0.2	0.013	15.6	0.2	1.6	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
NAD_binding_10	PF13460.6	gi|257052292|ref|YP_003130125.1|	-	0.0077	16.1	2.8	0.015	15.2	1.5	2.0	1	1	0	2	2	2	1	NAD(P)H-binding
UDPG_MGDP_dh_N	PF03721.14	gi|257052292|ref|YP_003130125.1|	-	0.0079	15.8	0.6	0.1	12.2	0.1	2.2	1	1	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NAD_binding_2	PF03446.15	gi|257052292|ref|YP_003130125.1|	-	0.024	14.8	0.1	0.062	13.5	0.0	1.7	1	1	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
GFO_IDH_MocA	PF01408.22	gi|257052292|ref|YP_003130125.1|	-	0.031	15.1	0.6	0.095	13.5	0.6	1.9	1	1	0	1	1	1	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Epimerase	PF01370.21	gi|257052292|ref|YP_003130125.1|	-	0.04	13.4	0.1	0.077	12.4	0.1	1.5	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
Pyr_redox_2	PF07992.14	gi|257052292|ref|YP_003130125.1|	-	0.041	13.1	0.4	0.11	11.7	0.1	1.7	1	1	1	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
PglD_N	PF17836.1	gi|257052292|ref|YP_003130125.1|	-	0.051	14.2	0.3	0.15	12.7	0.1	1.9	2	0	0	2	2	2	0	PglD	N-terminal	domain
2-Hacid_dh_C	PF02826.19	gi|257052292|ref|YP_003130125.1|	-	0.083	12.2	0.0	0.14	11.5	0.0	1.5	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
LYTB	PF02401.18	gi|257052292|ref|YP_003130125.1|	-	0.092	12.0	0.3	0.42	9.8	0.1	1.9	2	0	0	2	2	2	0	LytB	protein
PK_C	PF02887.16	gi|257052292|ref|YP_003130125.1|	-	0.098	12.9	0.6	0.2	11.9	0.2	1.8	2	1	0	2	2	2	0	Pyruvate	kinase,	alpha/beta	domain
DUF3631	PF12307.8	gi|257052292|ref|YP_003130125.1|	-	0.1	12.8	0.1	0.16	12.1	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3631)
TrkH	PF02386.16	gi|257052293|ref|YP_003130126.1|	-	9.6e-75	251.9	13.2	8.9e-74	248.7	13.2	1.9	1	1	0	1	1	1	1	Cation	transport	protein
Tox-WTIP	PF15654.6	gi|257052294|ref|YP_003130127.1|	-	0.51	10.8	2.3	0.61	10.5	1.8	1.4	1	1	0	1	1	1	0	Toxin	with	a	conserved	tryptophan	and	TIP	tripeptide	motif
TFIIB	PF00382.19	gi|257052295|ref|YP_003130128.1|	-	3.1e-47	158.5	1.9	7.7e-26	89.9	0.2	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|257052295|ref|YP_003130128.1|	-	2.2e-19	68.7	3.6	4.6e-19	67.7	3.6	1.6	1	0	0	1	1	1	1	TFIIB	zinc-binding
A2L_zn_ribbon	PF08792.10	gi|257052295|ref|YP_003130128.1|	-	0.0098	15.6	0.7	0.024	14.3	0.7	1.7	1	0	0	1	1	1	1	A2L	zinc	ribbon	domain
Lar_restr_allev	PF14354.6	gi|257052295|ref|YP_003130128.1|	-	0.013	15.9	1.1	0.028	14.8	0.4	1.9	2	0	0	2	2	2	0	Restriction	alleviation	protein	Lar
PhnA_Zn_Ribbon	PF08274.12	gi|257052295|ref|YP_003130128.1|	-	0.015	15.3	2.3	0.031	14.2	2.3	1.5	1	0	0	1	1	1	0	PhnA	Zinc-Ribbon
TerY_C	PF15616.6	gi|257052295|ref|YP_003130128.1|	-	0.018	15.1	0.1	0.042	13.9	0.1	1.5	1	0	0	1	1	1	0	TerY-C	metal	binding	domain
Zn_Tnp_IS1595	PF12760.7	gi|257052295|ref|YP_003130128.1|	-	0.045	13.7	0.0	0.1	12.6	0.0	1.5	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
Cyclin_C	PF02984.19	gi|257052295|ref|YP_003130128.1|	-	0.051	13.7	0.0	0.49	10.5	0.0	2.1	2	0	0	2	2	2	0	Cyclin,	C-terminal	domain
Sigma70_r4	PF04545.16	gi|257052295|ref|YP_003130128.1|	-	0.053	13.1	2.4	0.37	10.3	0.1	3.4	3	1	1	4	4	4	0	Sigma-70,	region	4
OrfB_Zn_ribbon	PF07282.11	gi|257052295|ref|YP_003130128.1|	-	0.098	12.6	1.0	0.37	10.7	0.6	2.1	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
HTH_23	PF13384.6	gi|257052295|ref|YP_003130128.1|	-	0.11	12.3	0.7	0.75	9.7	0.1	2.7	3	0	0	3	3	3	0	Homeodomain-like	domain
zf-ribbon_3	PF13248.6	gi|257052295|ref|YP_003130128.1|	-	0.27	10.7	2.5	1.3	8.5	2.5	2.0	1	1	0	1	1	1	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|257052295|ref|YP_003130128.1|	-	0.39	10.9	4.2	1.5	9.0	0.7	2.5	1	1	0	2	2	2	0	Zinc	ribbon	domain
Trm112p	PF03966.16	gi|257052295|ref|YP_003130128.1|	-	1.2	9.8	3.9	32	5.2	3.9	2.7	1	1	0	1	1	1	0	Trm112p-like	protein
zf-C4_Topoisom	PF01396.19	gi|257052295|ref|YP_003130128.1|	-	1.3	8.9	3.1	0.49	10.2	0.3	1.8	1	1	1	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
HTH_20	PF12840.7	gi|257052297|ref|YP_003130130.1|	-	1.3e-07	31.6	0.4	1.8e-07	31.1	0.4	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|257052297|ref|YP_003130130.1|	-	0.00093	19.1	0.1	0.0019	18.1	0.0	1.5	2	0	0	2	2	2	1	HTH	domain
HTH_AsnC-type	PF13404.6	gi|257052297|ref|YP_003130130.1|	-	0.002	17.9	2.4	0.0051	16.6	2.4	1.7	1	1	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
MarR_2	PF12802.7	gi|257052297|ref|YP_003130130.1|	-	0.0025	17.7	0.0	0.0032	17.3	0.0	1.4	1	1	0	1	1	1	1	MarR	family
PadR	PF03551.14	gi|257052297|ref|YP_003130130.1|	-	0.0083	16.1	0.0	0.011	15.7	0.0	1.3	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_Crp_2	PF13545.6	gi|257052297|ref|YP_003130130.1|	-	0.014	15.4	0.1	0.021	14.8	0.1	1.3	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
TrmB	PF01978.19	gi|257052297|ref|YP_003130130.1|	-	0.016	15.1	0.0	0.023	14.6	0.0	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|257052297|ref|YP_003130130.1|	-	0.049	13.2	0.0	0.079	12.5	0.0	1.4	1	1	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.10	gi|257052297|ref|YP_003130130.1|	-	0.084	12.7	0.0	0.13	12.0	0.0	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
FUR	PF01475.19	gi|257052297|ref|YP_003130130.1|	-	0.09	12.9	0.0	0.11	12.7	0.0	1.2	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
HTH_27	PF13463.6	gi|257052297|ref|YP_003130130.1|	-	0.097	13.2	0.0	0.14	12.6	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_36	PF13730.6	gi|257052297|ref|YP_003130130.1|	-	0.22	11.5	0.0	0.3	11.1	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
Chlor_dismutase	PF06778.12	gi|257052298|ref|YP_003130131.1|	-	3e-66	222.7	0.1	7.4e-66	221.4	0.1	1.7	1	0	0	1	1	1	1	Chlorite	dismutase
ABM	PF03992.16	gi|257052298|ref|YP_003130131.1|	-	9.7e-10	38.4	0.1	9.7e-10	38.4	0.1	3.3	3	1	0	3	3	3	1	Antibiotic	biosynthesis	monooxygenase
Polbeta	PF18765.1	gi|257052299|ref|YP_003130132.1|	-	1.1e-15	57.5	0.0	1.6e-15	57.0	0.0	1.3	1	0	0	1	1	1	1	Polymerase	beta,	Nucleotidyltransferase
NTP_transf_2	PF01909.23	gi|257052299|ref|YP_003130132.1|	-	6.9e-08	32.7	0.1	8.8e-08	32.3	0.1	1.4	1	1	0	1	1	1	1	Nucleotidyltransferase	domain
DUF4269	PF14091.6	gi|257052299|ref|YP_003130132.1|	-	0.089	13.0	0.0	0.13	12.5	0.0	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4269)
DUF86	PF01934.17	gi|257052300|ref|YP_003130133.1|	-	1.8e-23	82.7	0.1	2e-23	82.5	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF86
NTase_sub_bind	PF08780.11	gi|257052300|ref|YP_003130133.1|	-	0.0018	18.2	0.1	0.0023	17.9	0.1	1.2	1	0	0	1	1	1	1	Nucleotidyltransferase	substrate	binding	protein	like
RIG-I_C-RD	PF11648.8	gi|257052301|ref|YP_003130134.1|	-	0.062	13.5	0.0	0.11	12.8	0.0	1.5	1	1	0	1	1	1	0	C-terminal	domain	of	RIG-I
NifU_N	PF01592.16	gi|257052302|ref|YP_003130135.1|	-	2.4e-28	98.8	0.1	2.8e-28	98.6	0.1	1.1	1	0	0	1	1	1	1	NifU-like	N	terminal	domain
SufE	PF02657.15	gi|257052302|ref|YP_003130135.1|	-	0.07	13.0	0.0	0.1	12.5	0.0	1.2	1	0	0	1	1	1	0	Fe-S	metabolism	associated	domain
Peptidase_S51	PF03575.17	gi|257052303|ref|YP_003130136.1|	-	0.028	14.1	0.0	0.053	13.2	0.0	1.4	1	0	0	1	1	1	0	Peptidase	family	S51
HSBP1	PF06825.12	gi|257052303|ref|YP_003130136.1|	-	0.054	13.4	0.1	0.88	9.5	0.0	2.5	2	0	0	2	2	2	0	Heat	shock	factor	binding	protein	1
bPH_3	PF14470.6	gi|257052303|ref|YP_003130136.1|	-	0.068	13.5	0.0	0.11	12.8	0.0	1.4	1	0	0	1	1	1	0	Bacterial	PH	domain
Phasin_2	PF09361.10	gi|257052303|ref|YP_003130136.1|	-	0.55	10.5	10.0	7	7.0	0.0	4.1	3	2	1	4	4	4	0	Phasin	protein
Phasin	PF05597.11	gi|257052303|ref|YP_003130136.1|	-	1.1	9.3	9.5	0.87	9.6	0.4	4.1	2	1	3	5	5	5	0	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
AATF-Che1	PF13339.6	gi|257052303|ref|YP_003130136.1|	-	2.4	8.9	6.3	3.5	8.3	0.1	2.6	2	1	0	2	2	2	0	Apoptosis	antagonizing	transcription	factor
OEP	PF02321.18	gi|257052303|ref|YP_003130136.1|	-	5.4	6.8	9.6	2.1	8.1	0.3	2.6	3	0	0	3	3	3	0	Outer	membrane	efflux	protein
DUF4404	PF14357.6	gi|257052303|ref|YP_003130136.1|	-	5.6	7.7	11.5	2.6	8.8	0.6	3.7	3	1	0	3	3	3	0	Domain	of	unknown	function	(DUF4404)
CorA	PF01544.18	gi|257052303|ref|YP_003130136.1|	-	9.3	5.5	6.4	3.8	6.7	0.6	2.6	2	1	0	2	2	2	0	CorA-like	Mg2+	transporter	protein
Aminotran_5	PF00266.19	gi|257052304|ref|YP_003130137.1|	-	1.2e-146	488.5	0.1	1.3e-146	488.3	0.1	1.0	1	0	0	1	1	1	1	Aminotransferase	class-V
DegT_DnrJ_EryC1	PF01041.17	gi|257052304|ref|YP_003130137.1|	-	9.3e-10	38.3	0.5	1.4e-09	37.8	0.5	1.2	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Beta_elim_lyase	PF01212.21	gi|257052304|ref|YP_003130137.1|	-	4.3e-07	29.5	0.2	4.5e-06	26.2	0.1	2.0	2	0	0	2	2	2	1	Beta-eliminating	lyase
Cys_Met_Meta_PP	PF01053.20	gi|257052304|ref|YP_003130137.1|	-	0.0012	17.5	0.0	0.0019	16.8	0.0	1.3	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Pyridoxal_deC	PF00282.19	gi|257052304|ref|YP_003130137.1|	-	0.0079	15.0	0.0	0.04	12.6	0.1	1.8	2	0	0	2	2	2	1	Pyridoxal-dependent	decarboxylase	conserved	domain
SelA	PF03841.13	gi|257052304|ref|YP_003130137.1|	-	0.15	11.0	0.0	0.36	9.8	0.0	1.5	1	1	0	1	1	1	0	L-seryl-tRNA	selenium	transferase
CHU_C	PF13585.6	gi|257052306|ref|YP_003130139.1|	-	0.0021	18.0	0.2	0.071	13.2	0.2	2.7	2	0	0	2	2	2	1	C-terminal	domain	of	CHU	protein	family
TAT_signal	PF10518.9	gi|257052306|ref|YP_003130139.1|	-	0.3	11.0	2.8	0.66	9.9	2.8	1.6	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
COXG	PF06240.13	gi|257052307|ref|YP_003130140.1|	-	2.5e-19	69.4	0.0	2.8e-19	69.2	0.0	1.0	1	0	0	1	1	1	1	Carbon	monoxide	dehydrogenase	subunit	G	(CoxG)
Polyketide_cyc2	PF10604.9	gi|257052307|ref|YP_003130140.1|	-	4.2e-07	30.3	0.2	4.6e-07	30.2	0.2	1.0	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
AHSA1	PF08327.11	gi|257052307|ref|YP_003130140.1|	-	3.5e-05	24.0	0.0	5.6e-05	23.4	0.0	1.3	1	1	0	1	1	1	1	Activator	of	Hsp90	ATPase	homolog	1-like	protein
Polyketide_cyc	PF03364.20	gi|257052307|ref|YP_003130140.1|	-	0.0036	17.5	0.0	0.011	16.0	0.0	1.7	1	1	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
Flavin_Reduct	PF01613.18	gi|257052308|ref|YP_003130141.1|	-	1.4e-17	64.2	0.0	1.8e-17	63.8	0.0	1.1	1	0	0	1	1	1	1	Flavin	reductase	like	domain
SBP_bac_6	PF13343.6	gi|257052309|ref|YP_003130142.1|	-	7.3e-10	38.7	0.0	1.1e-09	38.1	0.0	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.6	gi|257052309|ref|YP_003130142.1|	-	0.00045	20.0	0.0	0.00077	19.3	0.0	1.4	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|257052309|ref|YP_003130142.1|	-	0.00068	19.7	1.2	0.0047	16.9	0.1	2.5	2	1	0	2	2	2	1	Bacterial	extracellular	solute-binding	protein
BPD_transp_1	PF00528.22	gi|257052310|ref|YP_003130143.1|	-	4.3e-18	65.7	48.4	1.5e-10	41.1	20.5	3.8	2	2	2	4	4	4	2	Binding-protein-dependent	transport	system	inner	membrane	component
Phosphonate-bd	PF12974.7	gi|257052311|ref|YP_003130144.1|	-	6.2e-05	22.7	0.1	0.00015	21.5	0.1	1.6	1	1	0	1	1	1	1	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
NMT1	PF09084.11	gi|257052311|ref|YP_003130144.1|	-	0.00032	20.7	0.0	0.0021	18.1	0.0	2.3	2	2	1	3	3	3	1	NMT1/THI5	like
SBP_bac_3	PF00497.20	gi|257052311|ref|YP_003130144.1|	-	0.012	15.0	0.0	0.026	13.9	0.0	1.4	1	1	0	1	1	1	0	Bacterial	extracellular	solute-binding	proteins,	family	3
VitK2_biosynth	PF02621.14	gi|257052311|ref|YP_003130144.1|	-	0.013	15.0	0.0	0.75	9.3	0.0	2.4	2	0	0	2	2	2	0	Menaquinone	biosynthesis
NMT1	PF09084.11	gi|257052312|ref|YP_003130145.1|	-	0.0041	17.1	0.0	0.0071	16.3	0.0	1.4	1	0	0	1	1	1	1	NMT1/THI5	like
VitK2_biosynth	PF02621.14	gi|257052312|ref|YP_003130145.1|	-	0.05	13.1	0.0	0.19	11.2	0.0	1.9	2	1	0	2	2	2	0	Menaquinone	biosynthesis
ABC_tran	PF00005.27	gi|257052313|ref|YP_003130146.1|	-	1.6e-31	109.6	0.0	2.3e-31	109.1	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|257052313|ref|YP_003130146.1|	-	4.8e-07	29.9	0.4	0.0071	16.2	0.2	2.2	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
TOBE_2	PF08402.10	gi|257052313|ref|YP_003130146.1|	-	0.00031	20.8	0.1	0.00093	19.3	0.1	1.8	1	0	0	1	1	1	1	TOBE	domain
AAA_16	PF13191.6	gi|257052313|ref|YP_003130146.1|	-	0.0024	18.3	0.1	0.0043	17.5	0.1	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_23	PF13476.6	gi|257052313|ref|YP_003130146.1|	-	0.006	17.1	0.0	0.0095	16.4	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
Rad17	PF03215.15	gi|257052313|ref|YP_003130146.1|	-	0.019	14.9	0.1	0.03	14.3	0.1	1.2	1	0	0	1	1	1	0	Rad17	P-loop	domain
AAA_22	PF13401.6	gi|257052313|ref|YP_003130146.1|	-	0.079	13.2	1.3	0.21	11.9	0.1	2.0	2	0	0	2	2	2	0	AAA	domain
AAA	PF00004.29	gi|257052313|ref|YP_003130146.1|	-	0.12	12.8	0.2	0.24	11.8	0.2	1.5	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_29	PF13555.6	gi|257052313|ref|YP_003130146.1|	-	0.15	11.8	0.1	0.35	10.7	0.0	1.6	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
AAA_30	PF13604.6	gi|257052313|ref|YP_003130146.1|	-	0.15	11.8	0.1	0.26	11.0	0.1	1.3	1	0	0	1	1	1	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|257052313|ref|YP_003130146.1|	-	0.18	11.7	0.0	0.34	10.8	0.0	1.3	1	0	0	1	1	1	0	RsgA	GTPase
CysA_C_terminal	PF17850.1	gi|257052313|ref|YP_003130146.1|	-	0.64	10.6	5.5	0.94	10.1	0.0	3.5	5	0	0	5	5	5	0	CysA	C-terminal	regulatory	domain
HTH_24	PF13412.6	gi|257052314|ref|YP_003130147.1|	-	6.3e-08	32.1	3.3	1e-05	24.9	0.1	2.9	3	0	0	3	3	3	2	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|257052314|ref|YP_003130147.1|	-	4.1e-06	26.6	0.0	1.1e-05	25.2	0.0	1.8	1	0	0	1	1	1	1	MarR	family
MarR_2	PF12802.7	gi|257052314|ref|YP_003130147.1|	-	1.8e-05	24.5	0.1	1.8e-05	24.5	0.1	2.5	3	0	0	3	3	3	1	MarR	family
HTH_AsnC-type	PF13404.6	gi|257052314|ref|YP_003130147.1|	-	3.6e-05	23.5	5.5	0.025	14.4	0.1	3.2	3	0	0	3	3	3	2	AsnC-type	helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|257052314|ref|YP_003130147.1|	-	0.01	15.8	0.0	0.1	12.6	0.0	2.3	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
TrmB	PF01978.19	gi|257052314|ref|YP_003130147.1|	-	0.021	14.7	0.0	0.075	12.9	0.0	1.8	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_23	PF13384.6	gi|257052314|ref|YP_003130147.1|	-	0.034	13.9	0.1	0.12	12.2	0.1	2.0	1	0	0	1	1	1	0	Homeodomain-like	domain
Trimer_CC	PF08954.11	gi|257052314|ref|YP_003130147.1|	-	0.051	13.1	4.3	0.056	13.0	0.5	2.8	3	0	0	3	3	3	0	Trimerisation	motif
HTH_11	PF08279.12	gi|257052314|ref|YP_003130147.1|	-	0.056	13.4	0.1	0.5	10.4	0.0	2.2	2	0	0	2	2	2	0	HTH	domain
HTH_Tnp_Tc3_2	PF01498.18	gi|257052314|ref|YP_003130147.1|	-	0.062	13.6	0.1	3.7	7.9	0.0	2.4	2	0	0	2	2	2	0	Transposase
Fe_dep_repress	PF01325.19	gi|257052314|ref|YP_003130147.1|	-	0.082	13.1	0.0	0.23	11.7	0.0	1.7	1	1	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_Tnp_ISL3	PF13542.6	gi|257052314|ref|YP_003130147.1|	-	0.098	12.1	0.3	3.1	7.3	0.2	2.5	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	transposase	family	ISL3
SMC_ScpB	PF04079.16	gi|257052314|ref|YP_003130147.1|	-	0.31	10.7	1.1	0.97	9.0	0.1	2.3	2	1	0	2	2	2	0	Segregation	and	condensation	complex	subunit	ScpB
NMT1	PF09084.11	gi|257052315|ref|YP_003130148.1|	-	0.0023	17.9	0.0	0.005	16.8	0.0	1.6	1	1	0	1	1	1	1	NMT1/THI5	like
SBP_bac_3	PF00497.20	gi|257052315|ref|YP_003130148.1|	-	0.034	13.6	0.0	0.068	12.6	0.0	1.5	1	1	0	1	1	1	0	Bacterial	extracellular	solute-binding	proteins,	family	3
TIG	PF01833.24	gi|257052316|ref|YP_003130149.1|	-	5.9e-06	26.3	4.1	0.38	10.8	0.0	5.2	3	2	1	4	4	4	2	IPT/TIG	domain
Big_6	PF17936.1	gi|257052316|ref|YP_003130149.1|	-	0.043	14.1	0.1	1.2	9.5	0.0	3.0	3	0	0	3	3	3	0	Bacterial	Ig	domain
bMG5	PF17972.1	gi|257052316|ref|YP_003130149.1|	-	0.11	12.8	0.0	0.59	10.5	0.0	2.1	2	0	0	2	2	2	0	Bacterial	Alpha-2-macroglobulin	MG5	domain
DoxX	PF07681.12	gi|257052317|ref|YP_003130150.1|	-	2e-09	37.9	6.5	4.9e-09	36.7	6.5	1.7	1	1	0	1	1	1	1	DoxX
DoxD	PF04173.13	gi|257052317|ref|YP_003130150.1|	-	0.0018	18.2	5.4	0.038	13.9	0.1	2.2	2	0	0	2	2	2	2	TQO	small	subunit	DoxD
NUDIX	PF00293.28	gi|257052318|ref|YP_003130151.1|	-	1.1e-13	51.3	0.4	1.5e-13	50.9	0.4	1.1	1	0	0	1	1	1	1	NUDIX	domain
AA_kinase	PF00696.28	gi|257052319|ref|YP_003130152.1|	-	1.7e-49	168.6	2.5	1.7e-49	168.6	2.5	1.4	2	0	0	2	2	2	1	Amino	acid	kinase	family
ACT_7	PF13840.6	gi|257052319|ref|YP_003130152.1|	-	1.5e-15	56.7	0.6	8.6e-09	35.1	0.1	2.6	2	0	0	2	2	2	2	ACT	domain
ACT	PF01842.25	gi|257052319|ref|YP_003130152.1|	-	7.2e-10	38.5	0.6	0.0017	18.1	0.0	3.0	2	0	0	2	2	2	2	ACT	domain
ACT_4	PF13291.6	gi|257052319|ref|YP_003130152.1|	-	0.0012	19.4	0.4	0.22	12.1	0.1	2.6	2	0	0	2	2	2	1	ACT	domain
DUF2007	PF09413.10	gi|257052319|ref|YP_003130152.1|	-	0.053	13.7	0.4	4.7	7.5	0.0	3.7	4	0	0	4	4	4	0	Putative	prokaryotic	signal	transducing	protein
SBP_bac_5	PF00496.22	gi|257052320|ref|YP_003130153.1|	-	3.3e-50	171.1	0.0	5e-46	157.4	0.0	2.4	3	0	0	3	3	3	2	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
PAP2_3	PF14378.6	gi|257052321|ref|YP_003130154.1|	-	2.3e-17	63.3	12.7	2.3e-17	63.3	12.7	1.9	2	1	0	2	2	2	1	PAP2	superfamily
PAP2	PF01569.21	gi|257052321|ref|YP_003130154.1|	-	1.1e-10	41.4	3.8	1.1e-10	41.4	3.8	2.5	2	1	1	3	3	3	1	PAP2	superfamily
Radical_SAM	PF04055.21	gi|257052322|ref|YP_003130155.1|	-	1.4e-05	25.5	0.4	0.00045	20.6	0.2	2.3	1	1	1	2	2	2	1	Radical	SAM	superfamily
Fer4_14	PF13394.6	gi|257052322|ref|YP_003130155.1|	-	0.00023	21.3	0.0	0.00041	20.5	0.0	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.6	gi|257052322|ref|YP_003130155.1|	-	0.044	14.1	0.1	0.13	12.5	0.1	1.7	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
DUF1272	PF06906.11	gi|257052323|ref|YP_003130156.1|	-	0.00018	21.5	0.7	0.00021	21.3	0.7	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1272)
DZR	PF12773.7	gi|257052323|ref|YP_003130156.1|	-	0.0031	17.5	0.9	0.0036	17.3	0.9	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
IBR	PF01485.21	gi|257052323|ref|YP_003130156.1|	-	0.007	16.6	0.7	0.008	16.4	0.7	1.1	1	0	0	1	1	1	1	IBR	domain,	a	half	RING-finger	domain
zf-C2HC5	PF06221.13	gi|257052323|ref|YP_003130156.1|	-	0.0092	15.9	0.6	0.01	15.8	0.6	1.1	1	0	0	1	1	1	1	Putative	zinc	finger	motif,	C2HC5-type
HypA	PF01155.19	gi|257052323|ref|YP_003130156.1|	-	0.012	15.6	0.7	0.013	15.5	0.7	1.1	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
RNA_POL_M_15KD	PF02150.16	gi|257052323|ref|YP_003130156.1|	-	0.021	14.7	1.0	0.58	10.1	0.0	2.1	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
OrfB_Zn_ribbon	PF07282.11	gi|257052323|ref|YP_003130156.1|	-	0.025	14.5	0.9	0.03	14.2	0.9	1.1	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Zn-ribbon_8	PF09723.10	gi|257052323|ref|YP_003130156.1|	-	0.061	13.4	3.2	0.58	10.3	3.3	2.0	1	1	1	2	2	2	0	Zinc	ribbon	domain
zf-AN1	PF01428.16	gi|257052323|ref|YP_003130156.1|	-	0.063	13.4	1.2	0.63	10.3	1.4	1.9	1	1	1	2	2	2	0	AN1-like	Zinc	finger
VWA	PF00092.28	gi|257052324|ref|YP_003130157.1|	-	2.8e-16	60.2	0.8	9.1e-16	58.6	0.8	1.8	1	1	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA_2	PF13519.6	gi|257052324|ref|YP_003130157.1|	-	2.2e-14	54.0	0.1	5.9e-14	52.6	0.1	1.7	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA_3	PF13768.6	gi|257052324|ref|YP_003130157.1|	-	4.5e-07	29.9	0.2	1.3e-05	25.1	0.0	2.4	2	0	0	2	2	2	1	von	Willebrand	factor	type	A	domain
vWA-TerF-like	PF10138.9	gi|257052324|ref|YP_003130157.1|	-	0.0006	20.0	1.6	0.024	14.8	1.6	2.2	1	1	0	1	1	1	1	vWA	found	in	TerF	C	terminus
VWA_CoxE	PF05762.14	gi|257052324|ref|YP_003130157.1|	-	0.00064	19.2	0.6	0.015	14.7	0.0	2.4	1	1	1	2	2	2	1	VWA	domain	containing	CoxE-like	protein
UPF0020	PF01170.18	gi|257052325|ref|YP_003130158.1|	-	2.3e-23	82.9	0.3	2.1e-22	79.8	0.3	2.2	1	1	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Methyltransf_25	PF13649.6	gi|257052325|ref|YP_003130158.1|	-	3.1e-11	43.8	0.1	7.2e-11	42.7	0.1	1.7	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|257052325|ref|YP_003130158.1|	-	4.2e-09	36.4	0.0	5.9e-09	35.9	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|257052325|ref|YP_003130158.1|	-	2.1e-08	34.7	0.1	4.8e-08	33.5	0.1	1.7	1	0	0	1	1	1	1	Methyltransferase	domain
Cons_hypoth95	PF03602.15	gi|257052325|ref|YP_003130158.1|	-	2.4e-07	30.6	0.0	4.5e-07	29.7	0.0	1.4	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
Ubie_methyltran	PF01209.18	gi|257052325|ref|YP_003130158.1|	-	2e-05	24.1	0.0	3e-05	23.5	0.0	1.2	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_23	PF13489.6	gi|257052325|ref|YP_003130158.1|	-	4.3e-05	23.4	0.0	8.6e-05	22.4	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
THUMP	PF02926.17	gi|257052325|ref|YP_003130158.1|	-	9e-05	22.6	0.0	0.00014	22.0	0.0	1.3	1	0	0	1	1	1	1	THUMP	domain
N6_Mtase	PF02384.16	gi|257052325|ref|YP_003130158.1|	-	0.008	15.5	0.0	0.016	14.5	0.0	1.5	1	1	0	1	1	1	1	N-6	DNA	Methylase
Methyltr_RsmB-F	PF01189.17	gi|257052325|ref|YP_003130158.1|	-	0.015	15.0	0.0	0.024	14.3	0.0	1.2	1	0	0	1	1	1	0	16S	rRNA	methyltransferase	RsmB/F
PCMT	PF01135.19	gi|257052325|ref|YP_003130158.1|	-	0.032	14.0	0.0	0.051	13.3	0.0	1.3	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
TPMT	PF05724.11	gi|257052325|ref|YP_003130158.1|	-	0.052	13.2	0.0	0.085	12.5	0.0	1.3	1	0	0	1	1	1	0	Thiopurine	S-methyltransferase	(TPMT)
Hydrolase_like	PF13242.6	gi|257052325|ref|YP_003130158.1|	-	0.088	12.9	0.3	1.2	9.3	0.1	2.8	3	0	0	3	3	2	0	HAD-hyrolase-like
PrmA	PF06325.13	gi|257052325|ref|YP_003130158.1|	-	0.11	11.9	0.1	0.17	11.3	0.1	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
N6_N4_Mtase	PF01555.18	gi|257052325|ref|YP_003130158.1|	-	0.28	10.9	0.0	0.57	9.9	0.0	1.5	2	0	0	2	2	2	0	DNA	methylase
DUF4072	PF13284.6	gi|257052325|ref|YP_003130158.1|	-	0.69	10.4	6.1	0.32	11.5	1.8	2.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4072)
TBP	PF00352.21	gi|257052326|ref|YP_003130159.1|	-	1.1e-57	192.0	0.0	1.6e-27	95.3	0.0	2.0	2	0	0	2	2	2	2	Transcription	factor	TFIID	(or	TATA-binding	protein,	TBP)
DUF3378	PF11858.8	gi|257052326|ref|YP_003130159.1|	-	0.00016	21.7	0.0	0.29	11.3	0.0	2.2	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF3378)
T4bSS_IcmS	PF12608.8	gi|257052326|ref|YP_003130159.1|	-	0.00031	21.0	0.0	0.083	13.2	0.0	2.2	2	0	0	2	2	2	2	Type	IVb	secretion,	IcmS,	effector-recruitment
PucR	PF07905.11	gi|257052326|ref|YP_003130159.1|	-	0.11	12.8	0.0	6.2	7.1	0.0	2.4	2	0	0	2	2	2	0	Purine	catabolism	regulatory	protein-like	family
SNARE_assoc	PF09335.11	gi|257052327|ref|YP_003130160.1|	-	0.22	12.0	12.0	5.6	7.5	12.0	2.6	1	1	0	1	1	1	0	SNARE	associated	Golgi	protein
Pyr_redox_2	PF07992.14	gi|257052328|ref|YP_003130161.1|	-	3.3e-34	118.5	8.5	4e-34	118.2	8.5	1.0	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|257052328|ref|YP_003130161.1|	-	2.2e-18	66.5	1.9	8.3e-13	48.2	0.2	2.4	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|257052328|ref|YP_003130161.1|	-	7.3e-08	31.5	1.0	2.1e-05	23.4	0.4	2.7	2	1	1	3	3	3	2	HI0933-like	protein
Pyr_redox	PF00070.27	gi|257052328|ref|YP_003130161.1|	-	9.1e-08	32.6	1.0	5.3e-05	23.7	0.1	2.6	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.24	gi|257052328|ref|YP_003130161.1|	-	1.9e-07	31.0	8.1	0.00086	19.0	1.2	3.1	2	1	1	3	3	3	2	FAD	dependent	oxidoreductase
GIDA	PF01134.22	gi|257052328|ref|YP_003130161.1|	-	1.9e-06	27.2	6.3	0.0011	18.1	0.4	3.7	3	1	1	4	4	4	2	Glucose	inhibited	division	protein	A
FAD_binding_2	PF00890.24	gi|257052328|ref|YP_003130161.1|	-	7.2e-06	25.3	0.2	1.8e-05	24.0	0.1	1.8	2	0	0	2	2	2	1	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|257052328|ref|YP_003130161.1|	-	1.4e-05	25.3	0.2	6.9e-05	23.0	0.1	2.2	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
FAD_oxidored	PF12831.7	gi|257052328|ref|YP_003130161.1|	-	4.4e-05	23.0	1.5	7.1e-05	22.3	1.5	1.3	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Thi4	PF01946.17	gi|257052328|ref|YP_003130161.1|	-	7.7e-05	22.0	0.3	0.00021	20.6	0.1	1.7	2	0	0	2	2	2	1	Thi4	family
NAD_binding_7	PF13241.6	gi|257052328|ref|YP_003130161.1|	-	0.00041	20.7	0.1	0.048	14.1	0.0	2.3	2	0	0	2	2	2	1	Putative	NAD(P)-binding
NAD_binding_9	PF13454.6	gi|257052328|ref|YP_003130161.1|	-	0.00049	20.1	3.7	0.68	9.9	0.1	3.4	3	0	0	3	3	3	2	FAD-NAD(P)-binding
K_oxygenase	PF13434.6	gi|257052328|ref|YP_003130161.1|	-	0.0018	17.5	0.0	0.68	9.0	0.0	2.1	2	0	0	2	2	2	2	L-lysine	6-monooxygenase	(NADPH-requiring)
AlaDh_PNT_C	PF01262.21	gi|257052328|ref|YP_003130161.1|	-	0.0041	16.5	0.1	0.0084	15.4	0.1	1.6	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
FAD_binding_3	PF01494.19	gi|257052328|ref|YP_003130161.1|	-	0.0047	16.2	0.2	0.015	14.6	0.2	1.7	2	0	0	2	2	2	1	FAD	binding	domain
Lycopene_cycl	PF05834.12	gi|257052328|ref|YP_003130161.1|	-	0.0047	16.0	0.1	0.12	11.4	0.2	2.1	2	0	0	2	2	2	1	Lycopene	cyclase	protein
Trp_halogenase	PF04820.14	gi|257052328|ref|YP_003130161.1|	-	2.3	7.0	4.7	0.51	9.1	0.1	2.2	3	0	0	3	3	3	0	Tryptophan	halogenase
PadR	PF03551.14	gi|257052330|ref|YP_003130163.1|	-	1.8e-05	24.6	0.0	3.4e-05	23.7	0.0	1.5	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
FUR	PF01475.19	gi|257052330|ref|YP_003130163.1|	-	4.7e-05	23.5	0.0	8.7e-05	22.7	0.0	1.4	1	0	0	1	1	1	1	Ferric	uptake	regulator	family
DUF2513	PF10711.9	gi|257052330|ref|YP_003130163.1|	-	0.00026	21.2	0.0	0.00046	20.4	0.0	1.5	1	1	0	1	1	1	1	Hypothetical	protein	(DUF2513)
MarR_2	PF12802.7	gi|257052330|ref|YP_003130163.1|	-	0.00031	20.6	0.0	0.00064	19.6	0.0	1.5	1	1	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|257052330|ref|YP_003130163.1|	-	0.0013	18.8	0.0	0.0024	17.9	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|257052330|ref|YP_003130163.1|	-	0.0056	16.2	0.2	0.051	13.1	0.0	2.5	3	0	0	3	3	3	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.19	gi|257052330|ref|YP_003130163.1|	-	0.0061	16.4	0.0	0.016	15.1	0.0	1.7	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.12	gi|257052330|ref|YP_003130163.1|	-	0.017	15.1	0.0	0.03	14.3	0.0	1.5	1	1	0	1	1	1	0	HTH	domain
MarR	PF01047.22	gi|257052330|ref|YP_003130163.1|	-	0.024	14.5	0.0	0.068	13.1	0.0	1.7	1	1	0	1	1	1	0	MarR	family
HTH_27	PF13463.6	gi|257052330|ref|YP_003130163.1|	-	0.039	14.5	0.0	0.07	13.6	0.0	1.6	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
Replic_Relax	PF13814.6	gi|257052330|ref|YP_003130163.1|	-	0.054	13.6	0.0	0.07	13.2	0.0	1.2	1	0	0	1	1	1	0	Replication-relaxation
RuBisCO_small	PF00101.20	gi|257052330|ref|YP_003130163.1|	-	0.061	13.3	0.0	0.1	12.6	0.0	1.5	1	1	0	1	1	1	0	Ribulose	bisphosphate	carboxylase,	small	chain
HTH_34	PF13601.6	gi|257052330|ref|YP_003130163.1|	-	0.11	12.7	0.0	0.17	12.1	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_5	PF01022.20	gi|257052330|ref|YP_003130163.1|	-	0.15	12.0	0.0	0.27	11.1	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Mnd1	PF03962.15	gi|257052330|ref|YP_003130163.1|	-	0.18	12.1	0.1	0.3	11.4	0.1	1.4	1	0	0	1	1	1	0	Mnd1	HTH	domain
AstE_AspA	PF04952.14	gi|257052331|ref|YP_003130164.1|	-	9.4e-60	202.1	0.0	1.1e-59	202.0	0.0	1.0	1	0	0	1	1	1	1	Succinylglutamate	desuccinylase	/	Aspartoacylase	family
ABM	PF03992.16	gi|257052332|ref|YP_003130165.1|	-	6.8e-17	61.4	0.3	9.4e-17	60.9	0.3	1.2	1	0	0	1	1	1	1	Antibiotic	biosynthesis	monooxygenase
Multi_ubiq	PF14452.6	gi|257052332|ref|YP_003130165.1|	-	0.088	13.1	0.1	0.13	12.5	0.1	1.3	1	0	0	1	1	1	0	Multiubiquitin
Orthoreo_P10	PF07204.11	gi|257052333|ref|YP_003130166.1|	-	0.016	15.1	0.0	0.027	14.4	0.0	1.4	1	0	0	1	1	1	0	Orthoreovirus	membrane	fusion	protein	p10
DUF1774	PF08611.10	gi|257052333|ref|YP_003130166.1|	-	0.84	10.0	4.6	2.2	8.6	2.5	2.3	1	1	0	2	2	2	0	Fungal	protein	of	unknown	function	(DUF1774)
DPM3	PF08285.11	gi|257052333|ref|YP_003130166.1|	-	2.7	8.3	7.7	0.58	10.4	2.0	2.3	1	1	0	2	2	2	0	Dolichol-phosphate	mannosyltransferase	subunit	3	(DPM3)
DUF575	PF04746.12	gi|257052333|ref|YP_003130166.1|	-	2.7	8.3	5.7	5.1	7.4	1.0	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF575)
DoxX	PF07681.12	gi|257052334|ref|YP_003130167.1|	-	2.1e-09	37.8	33.6	3.6e-09	37.1	7.1	4.0	3	1	1	4	4	4	2	DoxX
DoxD	PF04173.13	gi|257052334|ref|YP_003130167.1|	-	0.0061	16.5	16.4	0.14	12.0	2.9	3.7	2	2	1	3	3	3	2	TQO	small	subunit	DoxD
PALP	PF00291.25	gi|257052335|ref|YP_003130168.1|	-	2e-62	211.3	3.7	2.2e-62	211.1	3.7	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Cyt_c_ox_IV	PF12270.8	gi|257052335|ref|YP_003130168.1|	-	0.14	12.3	0.1	0.24	11.6	0.1	1.3	1	0	0	1	1	1	0	Cytochrome	c	oxidase	subunit	IV
Lipoprotein_2	PF00921.17	gi|257052335|ref|YP_003130168.1|	-	0.15	11.6	0.7	0.24	10.9	0.7	1.3	1	0	0	1	1	1	0	Borrelia	lipoprotein
MCPsignal	PF00015.21	gi|257052336|ref|YP_003130169.1|	-	4.1e-37	127.6	27.7	4.1e-37	127.6	27.7	4.7	1	1	4	5	5	5	1	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
PAS_4	PF08448.10	gi|257052336|ref|YP_003130169.1|	-	7.4e-12	45.5	1.3	3.6e-11	43.3	0.1	2.7	2	0	0	2	2	2	1	PAS	fold
PAS_9	PF13426.7	gi|257052336|ref|YP_003130169.1|	-	3.4e-07	30.5	0.0	1e-06	28.9	0.0	1.8	1	0	0	1	1	1	1	PAS	domain
PAS	PF00989.25	gi|257052336|ref|YP_003130169.1|	-	1.1e-05	25.3	0.1	5.7e-05	23.1	0.0	2.3	2	0	0	2	2	1	1	PAS	fold
PAS_10	PF13596.6	gi|257052336|ref|YP_003130169.1|	-	0.00063	20.3	0.1	0.011	16.3	0.0	3.0	2	1	0	3	3	2	1	PAS	domain
NPV_P10	PF05531.12	gi|257052336|ref|YP_003130169.1|	-	0.0014	19.0	25.4	0.14	12.6	0.8	5.9	4	1	2	6	6	6	1	Nucleopolyhedrovirus	P10	protein
YkyA	PF10368.9	gi|257052336|ref|YP_003130169.1|	-	0.0034	17.1	5.7	0.0034	17.1	5.7	4.6	2	1	2	5	5	5	1	Putative	cell-wall	binding	lipoprotein
Spc7	PF08317.11	gi|257052336|ref|YP_003130169.1|	-	0.004	16.1	23.4	0.12	11.3	8.5	3.4	2	1	0	3	3	3	2	Spc7	kinetochore	protein
DUF948	PF06103.11	gi|257052336|ref|YP_003130169.1|	-	0.011	16.0	40.1	2.6	8.3	5.8	6.4	2	2	3	5	5	5	0	Bacterial	protein	of	unknown	function	(DUF948)
DASH_Duo1	PF08651.10	gi|257052336|ref|YP_003130169.1|	-	0.011	15.5	8.2	3.7	7.4	0.1	5.3	4	1	1	5	5	5	0	DASH	complex	subunit	Duo1
DUF1664	PF07889.12	gi|257052336|ref|YP_003130169.1|	-	0.014	15.4	23.8	1.5	8.9	3.1	5.7	2	2	5	7	7	7	0	Protein	of	unknown	function	(DUF1664)
AAA_13	PF13166.6	gi|257052336|ref|YP_003130169.1|	-	0.015	14.0	22.6	0.028	13.1	4.6	2.2	1	1	1	2	2	2	0	AAA	domain
BLOC1_2	PF10046.9	gi|257052336|ref|YP_003130169.1|	-	0.015	15.6	19.0	1.3	9.4	0.8	6.2	3	2	2	7	7	6	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
PPE	PF00823.19	gi|257052336|ref|YP_003130169.1|	-	0.021	14.9	0.3	0.021	14.9	0.3	4.0	2	1	1	4	4	3	0	PPE	family
Sec8_exocyst	PF04048.14	gi|257052336|ref|YP_003130169.1|	-	0.024	14.5	14.0	1.9	8.4	1.0	4.7	3	2	2	5	5	5	0	Sec8	exocyst	complex	component	specific	domain
DUF4200	PF13863.6	gi|257052336|ref|YP_003130169.1|	-	0.024	15.0	6.9	4.6	7.7	0.1	3.7	3	1	1	4	4	3	0	Domain	of	unknown	function	(DUF4200)
Lipoprotein_6	PF01441.19	gi|257052336|ref|YP_003130169.1|	-	0.026	14.6	16.0	0.016	15.2	5.6	3.6	3	1	1	4	4	4	0	Lipoprotein
Laminin_II	PF06009.12	gi|257052336|ref|YP_003130169.1|	-	0.037	14.1	37.7	0.088	12.8	4.9	5.4	3	2	3	6	6	6	0	Laminin	Domain	II
Transcrip_act	PF04949.13	gi|257052336|ref|YP_003130169.1|	-	0.047	13.6	1.8	0.18	11.7	0.8	2.4	1	1	1	2	2	2	0	Transcriptional	activator
APG17	PF04108.12	gi|257052336|ref|YP_003130169.1|	-	0.053	12.6	22.7	0.47	9.5	17.5	2.7	1	1	1	2	2	2	0	Autophagy	protein	Apg17
Atg14	PF10186.9	gi|257052336|ref|YP_003130169.1|	-	0.093	11.8	5.1	0.46	9.5	1.1	2.8	1	1	2	3	3	3	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
Fib_alpha	PF08702.10	gi|257052336|ref|YP_003130169.1|	-	0.11	12.7	11.5	1.8	8.8	2.1	4.6	3	2	3	6	6	6	0	Fibrinogen	alpha/beta	chain	family
FH2	PF02181.23	gi|257052336|ref|YP_003130169.1|	-	0.21	10.7	9.1	1.2	8.2	1.9	2.7	2	1	0	2	2	2	0	Formin	Homology	2	Domain
DUF16	PF01519.16	gi|257052336|ref|YP_003130169.1|	-	0.22	12.0	4.8	2.1	8.9	1.3	3.1	2	2	1	3	3	3	0	Protein	of	unknown	function	DUF16
TPR_MLP1_2	PF07926.12	gi|257052336|ref|YP_003130169.1|	-	0.25	11.4	29.4	4.8	7.3	3.3	5.1	3	2	2	5	5	5	0	TPR/MLP1/MLP2-like	protein
MAD	PF05557.13	gi|257052336|ref|YP_003130169.1|	-	0.29	9.4	11.6	0.13	10.6	8.5	2.0	1	1	0	1	1	1	0	Mitotic	checkpoint	protein
TMPIT	PF07851.13	gi|257052336|ref|YP_003130169.1|	-	0.39	9.9	8.5	4.6	6.4	2.7	3.1	1	1	2	3	3	3	0	TMPIT-like	protein
Prominin	PF05478.11	gi|257052336|ref|YP_003130169.1|	-	0.49	8.3	8.2	0.37	8.7	3.6	2.0	1	1	1	2	2	2	0	Prominin
V_ATPase_I	PF01496.19	gi|257052336|ref|YP_003130169.1|	-	0.51	8.2	10.9	0.099	10.5	0.2	2.3	1	1	0	2	2	2	0	V-type	ATPase	116kDa	subunit	family
Vps54_N	PF10475.9	gi|257052336|ref|YP_003130169.1|	-	0.52	9.5	3.3	14	4.9	0.0	3.1	3	1	0	3	3	3	0	Vacuolar-sorting	protein	54,	of	GARP	complex
Laminin_I	PF06008.14	gi|257052336|ref|YP_003130169.1|	-	0.56	9.9	27.7	7.7	6.1	16.7	4.3	1	1	4	5	5	5	0	Laminin	Domain	I
ERM	PF00769.19	gi|257052336|ref|YP_003130169.1|	-	0.58	9.9	27.0	20	4.9	8.5	2.6	1	1	1	2	2	2	0	Ezrin/radixin/moesin	family
HAMP	PF00672.25	gi|257052336|ref|YP_003130169.1|	-	0.86	10.0	8.6	3.3	8.2	0.5	4.4	4	0	0	4	4	3	0	HAMP	domain
Syntaxin_2	PF14523.6	gi|257052336|ref|YP_003130169.1|	-	1.1	9.7	9.8	53	4.3	5.1	4.3	2	2	1	3	3	2	0	Syntaxin-like	protein
ApoLp-III	PF07464.11	gi|257052336|ref|YP_003130169.1|	-	1.2	9.2	30.6	1.2	9.3	4.8	4.8	3	2	2	5	5	5	0	Apolipophorin-III	precursor	(apoLp-III)
WXG100	PF06013.12	gi|257052336|ref|YP_003130169.1|	-	1.3	9.3	28.0	0.86	9.9	3.1	6.9	2	1	2	6	6	6	0	Proteins	of	100	residues	with	WXG
FlaC_arch	PF05377.11	gi|257052336|ref|YP_003130169.1|	-	1.3	9.5	11.8	58	4.2	0.0	5.5	4	1	1	5	5	5	0	Flagella	accessory	protein	C	(FlaC)
Synaptobrevin	PF00957.21	gi|257052336|ref|YP_003130169.1|	-	1.3	8.8	8.7	0.28	11.0	1.2	3.1	2	1	0	3	3	2	0	Synaptobrevin
DUF4618	PF15397.6	gi|257052336|ref|YP_003130169.1|	-	1.3	8.3	8.0	0.18	11.2	1.9	2.6	3	2	0	3	3	2	0	Domain	of	unknown	function	(DUF4618)
CREPT	PF16566.5	gi|257052336|ref|YP_003130169.1|	-	1.4	9.1	6.4	20	5.4	1.2	3.7	2	2	0	3	3	3	0	Cell-cycle	alteration	and	expression-elevated	protein	in	tumour
CorA	PF01544.18	gi|257052336|ref|YP_003130169.1|	-	2	7.6	13.4	7.1	5.9	7.3	3.0	1	1	2	3	3	3	0	CorA-like	Mg2+	transporter	protein
DUF4795	PF16043.5	gi|257052336|ref|YP_003130169.1|	-	2.1	7.9	11.9	6	6.4	1.2	3.7	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4795)
DUF2730	PF10805.8	gi|257052336|ref|YP_003130169.1|	-	2.2	8.4	12.1	63	3.7	1.5	4.7	5	0	0	5	5	4	0	Protein	of	unknown	function	(DUF2730)
Not3	PF04065.15	gi|257052336|ref|YP_003130169.1|	-	2.5	7.5	13.4	2.6	7.4	5.8	3.4	1	1	0	2	2	2	0	Not1	N-terminal	domain,	CCR4-Not	complex	component
CENP-F_leu_zip	PF10473.9	gi|257052336|ref|YP_003130169.1|	-	2.5	8.1	16.7	0.19	11.7	6.7	3.8	4	2	1	5	5	3	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
T7SS_ESX_EspC	PF10824.8	gi|257052336|ref|YP_003130169.1|	-	2.6	8.6	48.7	0.048	14.1	7.4	6.3	2	2	4	6	6	6	0	Excreted	virulence	factor	EspC,	type	VII	ESX	diderm
DUF724	PF05266.14	gi|257052336|ref|YP_003130169.1|	-	2.7	7.8	12.9	2.3	8.0	2.0	3.4	1	1	1	3	3	3	0	Protein	of	unknown	function	(DUF724)
FlgN	PF05130.12	gi|257052336|ref|YP_003130169.1|	-	3	8.4	20.8	50	4.4	0.1	4.6	1	1	4	5	5	5	0	FlgN	protein
Sec34	PF04136.15	gi|257052336|ref|YP_003130169.1|	-	4.4	7.2	13.4	2.4	8.0	1.2	4.1	3	2	1	5	5	4	0	Sec34-like	family
Serine_rich	PF08824.10	gi|257052336|ref|YP_003130169.1|	-	5.2	7.1	11.4	11	6.0	0.3	3.8	2	2	2	4	4	4	0	Serine	rich	protein	interaction	domain
PRKG1_interact	PF15898.5	gi|257052336|ref|YP_003130169.1|	-	6.5	7.7	11.8	12	6.9	2.5	4.4	3	2	2	5	5	4	0	cGMP-dependent	protein	kinase	interacting	domain
Goodbye	PF17109.5	gi|257052336|ref|YP_003130169.1|	-	7	7.1	11.3	30	5.1	1.2	4.4	2	2	1	3	3	3	0	fungal	STAND	N-terminal	Goodbye	domain
GrpE	PF01025.19	gi|257052336|ref|YP_003130169.1|	-	8.6	6.0	17.3	1.7e+02	1.7	15.7	3.4	1	1	1	2	2	2	0	GrpE
SRP54	PF00448.22	gi|257052337|ref|YP_003130170.1|	-	2.5e-62	210.0	0.1	3.6e-62	209.5	0.1	1.3	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
SRP_SPB	PF02978.19	gi|257052337|ref|YP_003130170.1|	-	4.1e-28	97.9	5.5	4.1e-28	97.9	5.5	3.2	4	0	0	4	4	3	1	Signal	peptide	binding	domain
SRP54_N	PF02881.19	gi|257052337|ref|YP_003130170.1|	-	6.5e-18	64.7	0.4	2.5e-17	62.9	0.1	2.3	2	0	0	2	2	1	1	SRP54-type	protein,	helical	bundle	domain
CbiA	PF01656.23	gi|257052337|ref|YP_003130170.1|	-	0.00031	20.8	0.0	0.00077	19.5	0.0	1.7	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
cobW	PF02492.19	gi|257052337|ref|YP_003130170.1|	-	0.0014	18.3	0.6	0.022	14.4	0.6	2.3	1	1	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
Zeta_toxin	PF06414.12	gi|257052337|ref|YP_003130170.1|	-	0.0042	16.4	0.0	0.015	14.6	0.0	1.9	2	0	0	2	2	2	1	Zeta	toxin
SMC_N	PF02463.19	gi|257052337|ref|YP_003130170.1|	-	0.011	15.2	0.0	0.017	14.6	0.0	1.3	1	0	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
ArsA_ATPase	PF02374.15	gi|257052337|ref|YP_003130170.1|	-	0.013	14.7	5.0	0.05	12.8	0.0	3.1	3	0	0	3	3	3	0	Anion-transporting	ATPase
AAA_24	PF13479.6	gi|257052337|ref|YP_003130170.1|	-	0.05	13.3	0.0	0.13	12.0	0.0	1.8	1	0	0	1	1	1	0	AAA	domain
AAA_18	PF13238.6	gi|257052337|ref|YP_003130170.1|	-	0.05	14.1	0.0	0.19	12.3	0.0	2.1	1	1	0	1	1	1	0	AAA	domain
APS_kinase	PF01583.20	gi|257052337|ref|YP_003130170.1|	-	0.052	13.4	0.0	0.1	12.5	0.0	1.5	1	0	0	1	1	1	0	Adenylylsulphate	kinase
AAA_33	PF13671.6	gi|257052337|ref|YP_003130170.1|	-	0.066	13.4	0.0	0.15	12.2	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_22	PF13401.6	gi|257052337|ref|YP_003130170.1|	-	0.066	13.5	0.0	0.32	11.3	0.0	2.2	3	0	0	3	3	2	0	AAA	domain
KTI12	PF08433.10	gi|257052337|ref|YP_003130170.1|	-	0.089	12.2	0.0	0.18	11.2	0.0	1.5	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
MobB	PF03205.14	gi|257052337|ref|YP_003130170.1|	-	0.13	12.2	0.0	0.27	11.1	0.0	1.5	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
NACHT	PF05729.12	gi|257052337|ref|YP_003130170.1|	-	0.38	10.6	1.6	0.82	9.6	0.2	2.2	2	0	0	2	2	2	0	NACHT	domain
AAA_17	PF13207.6	gi|257052337|ref|YP_003130170.1|	-	1.3	9.4	7.3	0.85	10.0	0.8	3.5	3	1	0	3	3	3	0	AAA	domain
AAA_28	PF13521.6	gi|257052337|ref|YP_003130170.1|	-	2.2	8.5	4.6	14	5.9	0.3	3.3	2	1	1	3	3	3	0	AAA	domain
ABC_membrane	PF00664.23	gi|257052338|ref|YP_003130171.1|	-	7.8e-43	147.1	6.9	1.4e-42	146.3	6.9	1.4	1	1	0	1	1	1	1	ABC	transporter	transmembrane	region
ABC_tran	PF00005.27	gi|257052338|ref|YP_003130171.1|	-	3.1e-36	124.9	0.0	5.5e-36	124.1	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_22	PF13401.6	gi|257052338|ref|YP_003130171.1|	-	6.4e-05	23.3	0.0	0.00027	21.2	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
Zeta_toxin	PF06414.12	gi|257052338|ref|YP_003130171.1|	-	0.00018	20.9	0.0	0.00032	20.0	0.0	1.4	1	0	0	1	1	1	1	Zeta	toxin
SMC_N	PF02463.19	gi|257052338|ref|YP_003130171.1|	-	0.00042	19.8	0.6	0.025	14.0	0.1	2.1	1	1	1	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
RsgA_GTPase	PF03193.16	gi|257052338|ref|YP_003130171.1|	-	0.0012	18.8	0.0	0.0024	17.8	0.0	1.4	1	0	0	1	1	1	1	RsgA	GTPase
AAA_24	PF13479.6	gi|257052338|ref|YP_003130171.1|	-	0.0039	16.9	0.0	0.01	15.6	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|257052338|ref|YP_003130171.1|	-	0.0049	17.3	0.2	0.012	16.0	0.2	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_21	PF13304.6	gi|257052338|ref|YP_003130171.1|	-	0.0059	16.4	0.0	0.047	13.5	0.0	2.2	2	1	1	3	3	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA	PF00004.29	gi|257052338|ref|YP_003130171.1|	-	0.006	17.0	0.1	0.042	14.3	0.1	2.2	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_30	PF13604.6	gi|257052338|ref|YP_003130171.1|	-	0.0069	16.1	0.4	0.017	14.8	0.4	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|257052338|ref|YP_003130171.1|	-	0.0099	15.6	0.0	0.03	14.1	0.0	1.8	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_18	PF13238.6	gi|257052338|ref|YP_003130171.1|	-	0.021	15.4	0.0	0.057	14.0	0.0	1.9	1	0	0	1	1	1	0	AAA	domain
AAA_7	PF12775.7	gi|257052338|ref|YP_003130171.1|	-	0.042	13.4	0.0	0.097	12.2	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
DUF87	PF01935.17	gi|257052338|ref|YP_003130171.1|	-	0.047	13.8	0.0	0.13	12.3	0.0	1.7	1	0	0	1	1	1	0	Helicase	HerA,	central	domain
TsaE	PF02367.17	gi|257052338|ref|YP_003130171.1|	-	0.05	13.6	0.0	0.1	12.6	0.0	1.5	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_33	PF13671.6	gi|257052338|ref|YP_003130171.1|	-	0.055	13.6	0.0	0.13	12.4	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_5	PF07728.14	gi|257052338|ref|YP_003130171.1|	-	0.091	12.8	0.1	0.66	10.0	0.0	2.3	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
MMR_HSR1	PF01926.23	gi|257052338|ref|YP_003130171.1|	-	0.1	12.7	0.0	0.26	11.4	0.0	1.7	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
DUF815	PF05673.13	gi|257052338|ref|YP_003130171.1|	-	0.11	11.6	0.0	0.18	10.9	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
Guanylate_kin	PF00625.21	gi|257052338|ref|YP_003130171.1|	-	0.11	12.1	0.1	0.38	10.4	0.1	1.8	1	1	0	1	1	1	0	Guanylate	kinase
AAA_23	PF13476.6	gi|257052338|ref|YP_003130171.1|	-	0.12	12.9	0.0	0.26	11.8	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
HupE_UreJ_2	PF13795.6	gi|257052339|ref|YP_003130172.1|	-	0.014	15.1	0.3	0.014	15.1	0.3	1.1	1	0	0	1	1	1	0	HupE	/	UreJ	protein
DUF3488	PF11992.8	gi|257052339|ref|YP_003130172.1|	-	0.019	13.9	0.5	0.021	13.8	0.5	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3488)
PDT	PF00800.18	gi|257052340|ref|YP_003130173.1|	-	1.6e-47	161.7	0.7	2e-47	161.4	0.7	1.1	1	0	0	1	1	1	1	Prephenate	dehydratase
ACT	PF01842.25	gi|257052340|ref|YP_003130173.1|	-	1.6e-06	27.7	0.0	6.3e-06	25.9	0.0	2.0	1	1	0	1	1	1	1	ACT	domain
DBD_HTH	PF18430.1	gi|257052340|ref|YP_003130173.1|	-	0.053	13.3	0.6	4.8	7.0	0.0	3.5	3	0	0	3	3	3	0	Putative	DNA-binding	domain
Pkinase	PF00069.25	gi|257052341|ref|YP_003130174.1|	-	5.7e-06	25.9	0.0	8.5e-06	25.3	0.0	1.2	1	0	0	1	1	1	1	Protein	kinase	domain
Pkinase_Tyr	PF07714.17	gi|257052341|ref|YP_003130174.1|	-	3.4e-05	23.2	0.0	4.9e-05	22.8	0.0	1.3	1	0	0	1	1	1	1	Protein	tyrosine	kinase
Kinase-like	PF14531.6	gi|257052341|ref|YP_003130174.1|	-	0.11	11.8	0.0	0.15	11.3	0.0	1.2	1	0	0	1	1	1	0	Kinase-like
RHH_1	PF01402.21	gi|257052343|ref|YP_003130176.1|	-	8.3e-06	25.6	0.3	4.1e-05	23.4	0.0	2.0	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
HicB_lk_antitox	PF15919.5	gi|257052343|ref|YP_003130176.1|	-	0.0088	16.1	0.0	0.013	15.6	0.0	1.2	1	0	0	1	1	1	1	HicB_like	antitoxin	of	bacterial	toxin-antitoxin	system
SHOCT	PF09851.9	gi|257052345|ref|YP_003130178.1|	-	0.00011	21.8	2.8	0.00018	21.1	2.8	1.3	1	0	0	1	1	1	1	Short	C-terminal	domain
DUF1707	PF08044.11	gi|257052345|ref|YP_003130178.1|	-	0.0023	17.9	0.1	0.0039	17.2	0.1	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1707)
GvpG	PF05120.12	gi|257052345|ref|YP_003130178.1|	-	0.053	13.5	1.5	0.084	12.9	1.5	1.3	1	0	0	1	1	1	0	Gas	vesicle	protein	G
ThrE	PF06738.12	gi|257052345|ref|YP_003130178.1|	-	2.7	7.3	7.4	9.7	5.5	0.2	2.1	2	0	0	2	2	2	0	Putative	threonine/serine	exporter
Cpn60_TCP1	PF00118.24	gi|257052346|ref|YP_003130179.1|	-	9.5e-175	581.9	17.9	1.1e-174	581.7	17.9	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
Peptidase_S66	PF02016.15	gi|257052346|ref|YP_003130179.1|	-	0.15	12.2	0.4	0.91	9.7	0.0	2.2	2	0	0	2	2	2	0	LD-carboxypeptidase	N-terminal	domain
CoA_binding_2	PF13380.6	gi|257052346|ref|YP_003130179.1|	-	0.26	11.8	1.8	2.2	8.8	0.1	2.7	2	0	0	2	2	2	0	CoA	binding	domain
P-II	PF00543.22	gi|257052346|ref|YP_003130179.1|	-	2.5	8.7	7.6	2	9.1	0.1	3.8	3	1	0	3	3	3	0	Nitrogen	regulatory	protein	P-II
Ala_racemase_N	PF01168.20	gi|257052346|ref|YP_003130179.1|	-	6	6.4	9.8	15	5.2	0.4	3.1	2	1	1	3	3	3	0	Alanine	racemase,	N-terminal	domain
SCAB_CC	PF16712.5	gi|257052346|ref|YP_003130179.1|	-	7.4	6.4	11.2	0.066	13.0	0.8	2.5	2	1	1	3	3	3	0	Coiled-coil	regions	of	plant-specific	actin-binding	protein
AAA_22	PF13401.6	gi|257052347|ref|YP_003130180.1|	-	6.7e-11	42.6	0.1	2.4e-10	40.8	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
PilJ	PF13675.6	gi|257052347|ref|YP_003130180.1|	-	0.016	15.2	0.1	0.057	13.5	0.1	1.9	2	0	0	2	2	2	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
AAA_16	PF13191.6	gi|257052347|ref|YP_003130180.1|	-	0.072	13.5	4.8	0.24	11.8	0.3	2.5	2	1	0	2	2	2	0	AAA	ATPase	domain
KH_1	PF00013.29	gi|257052348|ref|YP_003130181.1|	-	1.7e-14	53.4	0.4	1.5e-07	31.1	0.1	2.3	2	0	0	2	2	2	2	KH	domain
KH_2	PF07650.17	gi|257052348|ref|YP_003130181.1|	-	4e-05	23.3	1.3	0.00079	19.2	0.1	2.6	2	1	0	2	2	2	1	KH	domain
KH_8	PF17903.1	gi|257052348|ref|YP_003130181.1|	-	0.0058	16.7	0.0	0.0095	16.0	0.0	1.3	1	0	0	1	1	1	1	Krr1	KH1	domain
KH_4	PF13083.6	gi|257052348|ref|YP_003130181.1|	-	0.19	11.7	6.3	1.2	9.0	0.5	3.1	2	1	1	3	3	3	0	KH	domain
Rad51	PF08423.11	gi|257052349|ref|YP_003130182.1|	-	1.1e-76	257.5	0.0	1.9e-75	253.5	0.0	2.0	1	1	0	1	1	1	1	Rad51
HHH_5	PF14520.6	gi|257052349|ref|YP_003130182.1|	-	3.9e-11	43.4	0.0	1.1e-10	41.9	0.0	1.8	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
RecA	PF00154.21	gi|257052349|ref|YP_003130182.1|	-	8.1e-08	32.0	0.0	0.0042	16.6	0.0	2.1	2	0	0	2	2	2	2	recA	bacterial	DNA	recombination	protein
HHH	PF00633.23	gi|257052349|ref|YP_003130182.1|	-	8.1e-07	28.6	1.2	0.00018	21.2	0.2	2.6	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
HHH_2	PF12826.7	gi|257052349|ref|YP_003130182.1|	-	7.1e-05	22.8	0.0	0.00018	21.5	0.0	1.7	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
AAA_25	PF13481.6	gi|257052349|ref|YP_003130182.1|	-	0.00016	21.3	0.1	0.00027	20.6	0.1	1.4	1	0	0	1	1	1	1	AAA	domain
Cdd1	PF11731.8	gi|257052349|ref|YP_003130182.1|	-	0.00021	21.4	0.0	0.00042	20.5	0.0	1.5	1	0	0	1	1	1	1	Pathogenicity	locus
ATPase	PF06745.13	gi|257052349|ref|YP_003130182.1|	-	0.00029	20.3	0.0	0.00054	19.4	0.0	1.6	2	0	0	2	2	2	1	KaiC
HHH_3	PF12836.7	gi|257052349|ref|YP_003130182.1|	-	0.013	15.7	0.0	1.7	8.9	0.0	2.5	2	0	0	2	2	2	0	Helix-hairpin-helix	motif
DNA_pol_lambd_f	PF10391.9	gi|257052349|ref|YP_003130182.1|	-	0.016	15.0	0.0	0.064	13.1	0.0	2.1	1	0	0	1	1	1	0	Fingers	domain	of	DNA	polymerase	lambda
AAA_22	PF13401.6	gi|257052349|ref|YP_003130182.1|	-	0.017	15.4	0.1	0.052	13.8	0.1	1.8	1	1	0	1	1	1	0	AAA	domain
IMS_HHH	PF11798.8	gi|257052349|ref|YP_003130182.1|	-	0.021	15.1	0.0	0.067	13.5	0.0	1.9	2	0	0	2	2	2	0	IMS	family	HHH	motif
HHH_8	PF14716.6	gi|257052349|ref|YP_003130182.1|	-	0.042	14.2	0.0	0.23	11.9	0.0	2.2	2	0	0	2	2	2	0	Helix-hairpin-helix	domain
LrgB	PF04172.16	gi|257052350|ref|YP_003130183.1|	-	0.0006	19.4	1.9	0.0007	19.2	1.9	1.2	1	0	0	1	1	1	1	LrgB-like	family
Na_sulph_symp	PF00939.19	gi|257052350|ref|YP_003130183.1|	-	0.017	14.2	3.4	0.019	14.0	3.4	1.0	1	0	0	1	1	1	0	Sodium:sulfate	symporter	transmembrane	region
BaxI_1	PF12811.7	gi|257052350|ref|YP_003130183.1|	-	0.036	13.6	2.8	0.038	13.6	2.8	1.0	1	0	0	1	1	1	0	Bax	inhibitor	1	like
OPT	PF03169.15	gi|257052350|ref|YP_003130183.1|	-	0.9	8.1	7.2	0.98	8.0	7.2	1.0	1	0	0	1	1	1	0	OPT	oligopeptide	transporter	protein
AsnC_trans_reg	PF01037.21	gi|257052351|ref|YP_003130184.1|	-	3.3e-08	33.4	0.1	3.6e-08	33.2	0.1	1.0	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
NapD	PF03927.13	gi|257052351|ref|YP_003130184.1|	-	0.0019	18.2	0.2	0.0025	17.9	0.2	1.1	1	0	0	1	1	1	1	NapD	protein
TrkA_N	PF02254.18	gi|257052352|ref|YP_003130185.1|	-	5.4e-24	84.7	0.1	7.9e-24	84.2	0.1	1.2	1	0	0	1	1	1	1	TrkA-N	domain
TrkA_C	PF02080.21	gi|257052352|ref|YP_003130185.1|	-	5.8e-08	32.5	0.1	1.2e-07	31.4	0.1	1.5	1	0	0	1	1	1	1	TrkA-C	domain
DAO	PF01266.24	gi|257052352|ref|YP_003130185.1|	-	7e-05	22.6	0.3	8e-05	22.4	0.3	1.2	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
NAD_binding_7	PF13241.6	gi|257052352|ref|YP_003130185.1|	-	8.8e-05	22.9	0.0	0.00019	21.8	0.0	1.6	2	0	0	2	2	1	1	Putative	NAD(P)-binding
UDPG_MGDP_dh_N	PF03721.14	gi|257052352|ref|YP_003130185.1|	-	0.00013	21.6	0.0	0.00023	20.8	0.0	1.4	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
FAD_binding_3	PF01494.19	gi|257052352|ref|YP_003130185.1|	-	0.00018	20.9	0.0	0.0002	20.7	0.0	1.2	1	0	0	1	1	1	1	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|257052352|ref|YP_003130185.1|	-	0.00065	19.0	0.0	0.00085	18.6	0.0	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|257052352|ref|YP_003130185.1|	-	0.0016	18.6	0.1	0.0035	17.5	0.1	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
AdoHcyase_NAD	PF00670.21	gi|257052352|ref|YP_003130185.1|	-	0.0024	17.9	0.0	0.0083	16.2	0.0	1.8	2	0	0	2	2	2	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
3HCDH_N	PF02737.18	gi|257052352|ref|YP_003130185.1|	-	0.0026	17.7	0.1	0.0048	16.8	0.0	1.6	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ApbA	PF02558.16	gi|257052352|ref|YP_003130185.1|	-	0.0026	17.4	0.0	0.004	16.8	0.0	1.3	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
Pyr_redox	PF00070.27	gi|257052352|ref|YP_003130185.1|	-	0.0028	18.2	0.1	0.0055	17.2	0.1	1.5	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|257052352|ref|YP_003130185.1|	-	0.0055	15.8	0.0	0.0061	15.7	0.0	1.3	1	0	0	1	1	1	1	FAD	binding	domain
NAD_binding_10	PF13460.6	gi|257052352|ref|YP_003130185.1|	-	0.0076	16.2	0.3	0.016	15.1	0.1	1.6	2	0	0	2	2	2	1	NAD(P)H-binding
Glyco_transf_4	PF13439.6	gi|257052352|ref|YP_003130185.1|	-	0.01	15.8	0.2	0.072	13.1	0.1	2.1	1	1	0	2	2	2	0	Glycosyltransferase	Family	4
2-Hacid_dh_C	PF02826.19	gi|257052352|ref|YP_003130185.1|	-	0.014	14.7	0.0	0.023	14.1	0.0	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
XdhC_C	PF13478.6	gi|257052352|ref|YP_003130185.1|	-	0.025	15.1	0.0	0.075	13.5	0.0	1.8	2	0	0	2	2	2	0	XdhC	Rossmann	domain
IlvN	PF07991.12	gi|257052352|ref|YP_003130185.1|	-	0.048	13.2	0.0	0.076	12.6	0.0	1.4	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
Glyco_trans_4_4	PF13579.6	gi|257052352|ref|YP_003130185.1|	-	0.06	13.8	1.3	0.092	13.2	0.5	1.8	2	1	0	2	2	2	0	Glycosyl	transferase	4-like	domain
Rossmann-like	PF10727.9	gi|257052352|ref|YP_003130185.1|	-	0.062	13.2	0.1	0.14	12.0	0.0	1.6	2	0	0	2	2	2	0	Rossmann-like	domain
HI0933_like	PF03486.14	gi|257052352|ref|YP_003130185.1|	-	0.15	10.7	0.0	0.23	10.1	0.0	1.2	1	0	0	1	1	1	0	HI0933-like	protein
Lycopene_cycl	PF05834.12	gi|257052352|ref|YP_003130185.1|	-	0.17	10.9	0.0	0.25	10.4	0.0	1.2	1	0	0	1	1	1	0	Lycopene	cyclase	protein
AsnC_trans_reg	PF01037.21	gi|257052353|ref|YP_003130186.1|	-	4.5e-15	55.4	0.3	5.1e-15	55.2	0.3	1.0	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
GYD	PF08734.11	gi|257052353|ref|YP_003130186.1|	-	0.0064	16.4	0.6	0.007	16.3	0.6	1.1	1	0	0	1	1	1	1	GYD	domain
TadZ_N	PF16968.5	gi|257052353|ref|YP_003130186.1|	-	0.051	13.3	0.0	0.055	13.2	0.0	1.1	1	0	0	1	1	1	0	Pilus	assembly	protein	TadZ	N-terminal
Spore_YhcN_YlaJ	PF09580.10	gi|257052353|ref|YP_003130186.1|	-	0.13	12.3	1.8	0.24	11.5	1.8	1.5	1	1	0	1	1	1	0	Sporulation	lipoprotein	YhcN/YlaJ	(Spore_YhcN_YlaJ)
DUF4184	PF13803.6	gi|257052356|ref|YP_003130189.1|	-	0.00096	18.9	3.9	0.0049	16.6	3.9	1.9	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4184)
YdjM	PF04307.14	gi|257052356|ref|YP_003130189.1|	-	0.058	12.7	1.4	0.089	12.1	1.4	1.6	1	1	0	1	1	1	0	LexA-binding,	inner	membrane-associated	putative	hydrolase
Zn_dep_PLPC	PF00882.18	gi|257052356|ref|YP_003130189.1|	-	0.092	12.7	0.0	0.18	11.8	0.0	1.4	1	1	0	1	1	1	0	Zinc	dependent	phospholipase	C
Glycos_transf_3	PF00591.21	gi|257052357|ref|YP_003130190.1|	-	8.1e-101	336.9	1.1	1.2e-100	336.3	1.1	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family,	a/b	domain
Glycos_trans_3N	PF02885.17	gi|257052357|ref|YP_003130190.1|	-	1.6e-16	59.9	5.3	2.8e-15	55.9	3.7	2.3	2	0	0	2	2	2	1	Glycosyl	transferase	family,	helical	bundle	domain
DUF2717	PF10911.8	gi|257052357|ref|YP_003130190.1|	-	0.0051	16.5	0.0	0.017	14.8	0.0	1.9	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2717)
PRAI	PF00697.22	gi|257052358|ref|YP_003130191.1|	-	1.4e-38	132.6	0.1	1.6e-38	132.4	0.1	1.0	1	0	0	1	1	1	1	N-(5'phosphoribosyl)anthranilate	(PRA)	isomerase
TMP-TENI	PF02581.17	gi|257052358|ref|YP_003130191.1|	-	0.01	15.2	1.5	0.033	13.5	0.0	2.2	2	1	0	2	2	2	0	Thiamine	monophosphate	synthase
BtpA	PF03437.15	gi|257052358|ref|YP_003130191.1|	-	0.01	15.3	0.2	0.33	10.4	0.0	2.2	1	1	1	2	2	2	0	BtpA	family
PEP_mutase	PF13714.6	gi|257052358|ref|YP_003130191.1|	-	0.026	14.0	2.3	6	6.2	0.0	3.1	2	1	1	3	3	3	0	Phosphoenolpyruvate	phosphomutase
AAA_26	PF13500.6	gi|257052358|ref|YP_003130191.1|	-	0.029	14.2	0.1	0.044	13.6	0.1	1.3	1	0	0	1	1	1	0	AAA	domain
V_ATPase_prox	PF18274.1	gi|257052358|ref|YP_003130191.1|	-	0.038	13.9	0.4	0.12	12.4	0.4	1.8	1	0	0	1	1	1	0	Vacuolar	ATPase	Subunit	I	N-terminal	proximal	lobe
FMN_dh	PF01070.18	gi|257052358|ref|YP_003130191.1|	-	0.057	12.4	2.0	1.5	7.8	1.8	2.6	1	1	1	2	2	2	0	FMN-dependent	dehydrogenase
Ala_racemase_N	PF01168.20	gi|257052358|ref|YP_003130191.1|	-	0.089	12.4	0.1	2.5	7.7	0.0	2.3	1	1	1	2	2	2	0	Alanine	racemase,	N-terminal	domain
DeoC	PF01791.9	gi|257052358|ref|YP_003130191.1|	-	0.16	11.6	1.3	13	5.3	0.1	2.6	2	1	0	2	2	2	0	DeoC/LacD	family	aldolase
Chorismate_bind	PF00425.18	gi|257052359|ref|YP_003130192.1|	-	2.3e-90	302.7	0.0	4.7e-90	301.6	0.0	1.5	2	0	0	2	2	2	1	chorismate	binding	enzyme
Anth_synt_I_N	PF04715.13	gi|257052359|ref|YP_003130192.1|	-	3e-18	66.4	0.1	1.1e-15	58.0	0.0	3.3	2	1	0	2	2	2	2	Anthranilate	synthase	component	I,	N	terminal	region
GATase	PF00117.28	gi|257052360|ref|YP_003130193.1|	-	9.8e-44	149.4	0.0	1.1e-43	149.2	0.0	1.0	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|257052360|ref|YP_003130193.1|	-	7.1e-06	25.9	0.1	4.9e-05	23.2	0.1	2.0	1	1	0	1	1	1	1	Peptidase	C26
Thioredoxin	PF00085.20	gi|257052361|ref|YP_003130194.1|	-	1.3e-06	28.3	0.0	4.4e-06	26.6	0.0	1.7	2	0	0	2	2	2	1	Thioredoxin
Redoxin	PF08534.10	gi|257052361|ref|YP_003130194.1|	-	2.3e-05	24.2	0.0	3.3e-05	23.6	0.0	1.3	1	0	0	1	1	1	1	Redoxin
Thioredoxin_8	PF13905.6	gi|257052361|ref|YP_003130194.1|	-	0.00068	19.9	0.0	0.00097	19.4	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin-like
AhpC-TSA	PF00578.21	gi|257052361|ref|YP_003130194.1|	-	0.00076	19.4	0.0	0.0011	18.9	0.0	1.2	1	0	0	1	1	1	1	AhpC/TSA	family
TAT_signal	PF10518.9	gi|257052361|ref|YP_003130194.1|	-	0.051	13.4	4.1	0.091	12.6	4.1	1.4	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DsbD	PF02683.15	gi|257052362|ref|YP_003130195.1|	-	1.9e-11	44.2	14.0	2.6e-11	43.8	14.0	1.2	1	0	0	1	1	1	1	Cytochrome	C	biogenesis	protein	transmembrane	region
DsbD_2	PF13386.6	gi|257052362|ref|YP_003130195.1|	-	0.00079	19.4	16.8	0.0019	18.2	16.8	1.7	1	1	0	1	1	1	1	Cytochrome	C	biogenesis	protein	transmembrane	region
Metallophos_2	PF12850.7	gi|257052364|ref|YP_003130197.1|	-	2.2e-08	34.5	1.1	0.00015	22.0	0.4	3.0	3	0	0	3	3	3	2	Calcineurin-like	phosphoesterase	superfamily	domain
Phasin_2	PF09361.10	gi|257052364|ref|YP_003130197.1|	-	3.4e-07	30.4	15.3	0.0075	16.5	0.2	5.8	4	2	2	6	6	6	3	Phasin	protein
Metallophos	PF00149.28	gi|257052364|ref|YP_003130197.1|	-	4.9e-06	27.2	4.6	2.2e-05	25.0	3.4	2.4	2	0	0	2	2	2	1	Calcineurin-like	phosphoesterase
Baculo_PEP_C	PF04513.12	gi|257052364|ref|YP_003130197.1|	-	0.00037	20.6	1.9	11	6.1	0.2	4.6	3	1	0	4	4	4	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Rep_fac_C	PF08542.11	gi|257052364|ref|YP_003130197.1|	-	0.00051	20.4	3.9	7.1	7.1	0.0	5.6	2	1	4	6	6	5	1	Replication	factor	C	C-terminal	domain
ApoLp-III	PF07464.11	gi|257052364|ref|YP_003130197.1|	-	0.00078	19.6	0.2	0.081	13.0	0.1	2.6	2	0	0	2	2	2	1	Apolipophorin-III	precursor	(apoLp-III)
Tape_meas_lam_C	PF09718.10	gi|257052364|ref|YP_003130197.1|	-	0.043	14.0	9.8	9.3	6.5	0.0	6.2	6	2	1	7	7	7	0	Lambda	phage	tail	tape-measure	protein	(Tape_meas_lam_C)
Focal_AT	PF03623.13	gi|257052364|ref|YP_003130197.1|	-	0.043	13.8	1.2	14	5.7	0.3	3.0	1	1	0	2	2	2	0	Focal	adhesion	targeting	region
Cadherin_C_2	PF16492.5	gi|257052364|ref|YP_003130197.1|	-	0.11	13.3	0.0	0.22	12.3	0.0	1.4	1	0	0	1	1	1	0	Cadherin	cytoplasmic	C-terminal
Apolipoprotein	PF01442.18	gi|257052364|ref|YP_003130197.1|	-	0.12	12.3	3.9	2.4	8.0	2.1	3.4	2	1	1	3	3	3	0	Apolipoprotein	A1/A4/E	domain
Prominin	PF05478.11	gi|257052364|ref|YP_003130197.1|	-	0.14	10.1	0.0	4.6	5.1	0.0	2.0	1	1	1	2	2	2	0	Prominin
HicB_lk_antitox	PF15919.5	gi|257052364|ref|YP_003130197.1|	-	0.22	11.7	5.6	2.3	8.4	0.1	4.0	3	1	1	4	4	4	0	HicB_like	antitoxin	of	bacterial	toxin-antitoxin	system
IL32	PF15225.6	gi|257052364|ref|YP_003130197.1|	-	0.24	11.8	12.3	0.95	9.9	0.1	5.1	4	2	2	6	6	6	0	Interleukin	32
DUF643	PF04867.12	gi|257052364|ref|YP_003130197.1|	-	0.29	11.8	0.2	54	4.5	0.0	2.7	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF643)
Perilipin	PF03036.16	gi|257052364|ref|YP_003130197.1|	-	0.6	9.1	8.4	0.78	8.7	0.2	2.5	3	0	0	3	3	3	0	Perilipin	family
REF	PF05755.12	gi|257052364|ref|YP_003130197.1|	-	0.67	9.7	5.1	2.5	7.9	4.2	2.0	1	1	1	2	2	2	0	Rubber	elongation	factor	protein	(REF)
DUF2884	PF11101.8	gi|257052364|ref|YP_003130197.1|	-	1.1	8.8	5.6	1.3	8.4	0.4	3.3	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF2884)
YtxH	PF12732.7	gi|257052364|ref|YP_003130197.1|	-	1.3	9.6	5.6	11	6.7	0.5	3.7	3	1	0	3	3	3	0	YtxH-like	protein
EspB	PF05802.11	gi|257052364|ref|YP_003130197.1|	-	2.5	8.0	12.2	16	5.4	3.5	3.5	2	1	0	3	3	3	0	Enterobacterial	EspB	protein
Peptidase_C25	PF01364.18	gi|257052365|ref|YP_003130198.1|	-	0.028	13.6	0.0	0.029	13.6	0.0	1.2	1	0	0	1	1	1	0	Peptidase	family	C25
Ribonuc_red_lgC	PF02867.15	gi|257052366|ref|YP_003130199.1|	-	1.8e-151	505.2	0.0	2.3e-151	504.9	0.0	1.1	1	0	0	1	1	1	1	Ribonucleotide	reductase,	barrel	domain
Ribonuc_red_lgN	PF00317.21	gi|257052366|ref|YP_003130199.1|	-	1.2e-25	89.3	0.0	4.8e-25	87.4	0.0	2.1	1	0	0	1	1	1	1	Ribonucleotide	reductase,	all-alpha	domain
TackOD1	PF18551.1	gi|257052366|ref|YP_003130199.1|	-	0.063	13.0	0.4	0.12	12.1	0.4	1.4	1	0	0	1	1	1	0	Thaumarchaeal	output	domain	1
DUF3563	PF12086.8	gi|257052366|ref|YP_003130199.1|	-	0.21	11.4	1.4	0.6	9.9	1.4	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3563)
zf-RRN7	PF11781.8	gi|257052366|ref|YP_003130199.1|	-	0.77	9.5	4.5	1.7	8.4	4.5	1.5	1	0	0	1	1	1	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
zf-RING_7	PF02591.15	gi|257052366|ref|YP_003130199.1|	-	0.82	9.9	5.1	0.27	11.4	0.3	2.5	2	0	0	2	2	2	0	C4-type	zinc	ribbon	domain
Auto_anti-p27	PF06677.12	gi|257052367|ref|YP_003130200.1|	-	0.0021	18.2	3.2	0.0027	17.8	3.2	1.2	1	0	0	1	1	1	1	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zf-Mss51	PF13824.6	gi|257052367|ref|YP_003130200.1|	-	0.89	9.7	7.9	8.7	6.5	0.4	2.0	1	1	1	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
SNARE_assoc	PF09335.11	gi|257052368|ref|YP_003130201.1|	-	6.9e-16	58.8	4.7	6.9e-16	58.8	4.7	2.1	3	0	0	3	3	3	1	SNARE	associated	Golgi	protein
Kinocilin	PF15033.6	gi|257052368|ref|YP_003130201.1|	-	0.0034	17.0	0.7	0.0034	17.0	0.7	1.7	2	0	0	2	2	2	1	Kinocilin	protein
TSC22	PF01166.18	gi|257052370|ref|YP_003130203.1|	-	0.009	16.3	1.3	0.023	15.0	1.3	1.6	1	0	0	1	1	1	1	TSC-22/dip/bun	family
DUF3294	PF07957.11	gi|257052370|ref|YP_003130203.1|	-	0.041	13.6	0.4	0.09	12.5	0.4	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3294)
DUF5089	PF17002.5	gi|257052370|ref|YP_003130203.1|	-	0.095	12.6	2.1	0.19	11.6	2.1	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF5089)
Thymidylate_kin	PF02223.17	gi|257052374|ref|YP_003130207.1|	-	5.3e-37	127.3	0.0	6e-37	127.1	0.0	1.0	1	0	0	1	1	1	1	Thymidylate	kinase
AAA_18	PF13238.6	gi|257052374|ref|YP_003130207.1|	-	0.0033	18.0	0.0	0.0079	16.7	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|257052374|ref|YP_003130207.1|	-	0.014	15.6	0.0	0.037	14.2	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
dNK	PF01712.19	gi|257052374|ref|YP_003130207.1|	-	0.017	15.0	0.0	0.037	13.9	0.0	1.6	1	1	0	1	1	1	0	Deoxynucleoside	kinase
NAD_binding_10	PF13460.6	gi|257052375|ref|YP_003130208.1|	-	9.9e-31	107.0	0.0	1.3e-30	106.6	0.0	1.3	1	0	0	1	1	1	1	NAD(P)H-binding
Epimerase	PF01370.21	gi|257052375|ref|YP_003130208.1|	-	4.6e-20	72.1	0.0	2.4e-19	69.7	0.0	2.0	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
NmrA	PF05368.13	gi|257052375|ref|YP_003130208.1|	-	8.6e-16	58.2	0.0	1.2e-15	57.7	0.0	1.1	1	0	0	1	1	1	1	NmrA-like	family
3Beta_HSD	PF01073.19	gi|257052375|ref|YP_003130208.1|	-	2e-14	53.2	0.0	4.2e-13	48.9	0.0	2.1	1	1	1	2	2	2	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.17	gi|257052375|ref|YP_003130208.1|	-	2.4e-14	53.1	0.0	1e-12	47.7	0.0	2.2	1	1	0	1	1	1	1	RmlD	substrate	binding	domain
GDP_Man_Dehyd	PF16363.5	gi|257052375|ref|YP_003130208.1|	-	4.9e-07	29.5	0.0	1.1e-06	28.3	0.0	1.5	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
NAD_binding_4	PF07993.12	gi|257052375|ref|YP_003130208.1|	-	1.5e-05	24.3	0.0	0.014	14.6	0.0	2.3	1	1	0	2	2	2	2	Male	sterility	protein
Polysacc_synt_2	PF02719.15	gi|257052375|ref|YP_003130208.1|	-	7.3e-05	22.0	0.0	0.0022	17.2	0.0	2.1	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
adh_short	PF00106.25	gi|257052375|ref|YP_003130208.1|	-	0.00022	20.7	0.0	0.00032	20.2	0.0	1.3	1	0	0	1	1	1	1	short	chain	dehydrogenase
TrkA_N	PF02254.18	gi|257052375|ref|YP_003130208.1|	-	0.0049	17.1	0.1	0.013	15.7	0.0	1.7	2	0	0	2	2	2	1	TrkA-N	domain
Glyco_trans_4_4	PF13579.6	gi|257052375|ref|YP_003130208.1|	-	0.023	15.1	0.1	0.048	14.1	0.1	1.6	1	0	0	1	1	1	0	Glycosyl	transferase	4-like	domain
Glyco_transf_4	PF13439.6	gi|257052375|ref|YP_003130208.1|	-	0.045	13.7	0.0	0.098	12.7	0.0	1.6	1	0	0	1	1	1	0	Glycosyltransferase	Family	4
KR	PF08659.10	gi|257052375|ref|YP_003130208.1|	-	0.1	12.5	0.0	1.4	8.8	0.0	2.5	2	1	0	2	2	2	0	KR	domain
Tubulin	PF00091.25	gi|257052376|ref|YP_003130209.1|	-	1.6e-27	97.0	0.0	2.8e-27	96.2	0.0	1.4	1	0	0	1	1	1	1	Tubulin/FtsZ	family,	GTPase	domain
Tubulin_2	PF13809.6	gi|257052376|ref|YP_003130209.1|	-	0.081	12.1	0.1	0.12	11.5	0.1	1.4	1	0	0	1	1	1	0	Tubulin	like
DUF4366	PF14283.6	gi|257052377|ref|YP_003130210.1|	-	0.016	15.3	1.0	0.12	12.4	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4366)
DUF4398	PF14346.6	gi|257052377|ref|YP_003130210.1|	-	0.074	13.7	5.5	0.21	12.3	5.5	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4398)
DUF3813	PF12758.7	gi|257052377|ref|YP_003130210.1|	-	0.19	12.1	2.1	3.2	8.1	0.4	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3813)
CofC	PF01983.16	gi|257052378|ref|YP_003130211.1|	-	7.2e-39	133.2	0.0	7.8e-39	133.1	0.0	1.0	1	0	0	1	1	1	1	Guanylyl	transferase	CofC	like
NTP_transf_3	PF12804.7	gi|257052378|ref|YP_003130211.1|	-	0.00021	21.7	0.7	0.00024	21.5	0.7	1.3	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Radical_SAM	PF04055.21	gi|257052380|ref|YP_003130213.1|	-	4e-15	56.6	0.0	7.8e-15	55.6	0.0	1.5	1	0	0	1	1	1	1	Radical	SAM	superfamily
CbiZ	PF01955.18	gi|257052380|ref|YP_003130213.1|	-	0.12	12.4	0.0	0.18	11.9	0.0	1.4	1	0	0	1	1	1	0	Adenosylcobinamide	amidohydrolase
SBP_bac_5	PF00496.22	gi|257052381|ref|YP_003130214.1|	-	4.3e-33	114.8	5.2	7e-33	114.1	5.2	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
UCR_Fe-S_N	PF10399.9	gi|257052381|ref|YP_003130214.1|	-	0.14	11.5	0.2	0.28	10.6	0.2	1.5	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
zinc_ribbon_2	PF13240.6	gi|257052382|ref|YP_003130215.1|	-	0.00059	19.5	3.3	0.00085	19.0	3.3	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.7	gi|257052382|ref|YP_003130215.1|	-	0.00059	19.8	2.5	0.00086	19.3	2.5	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_15	PF17032.5	gi|257052382|ref|YP_003130215.1|	-	0.0044	17.7	0.4	0.0056	17.4	0.4	1.2	1	0	0	1	1	1	1	zinc-ribbon	family
zf-ribbon_3	PF13248.6	gi|257052382|ref|YP_003130215.1|	-	0.014	14.7	1.6	0.024	14.0	1.6	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|257052382|ref|YP_003130215.1|	-	0.38	10.3	3.5	0.71	9.4	3.5	1.4	1	0	0	1	1	1	0	TFIIB	zinc-binding
YrhK	PF14145.6	gi|257052382|ref|YP_003130215.1|	-	0.54	10.2	4.1	9.5	6.2	0.3	2.0	1	1	0	1	1	1	0	YrhK-like	protein
HTH_10	PF04967.12	gi|257052383|ref|YP_003130216.1|	-	3.5e-14	52.3	0.0	5.4e-14	51.7	0.0	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_24	PF13412.6	gi|257052383|ref|YP_003130216.1|	-	0.00089	18.8	0.0	0.0015	18.1	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|257052383|ref|YP_003130216.1|	-	0.0025	17.6	0.0	0.0057	16.5	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|257052383|ref|YP_003130216.1|	-	0.045	13.6	0.0	0.095	12.6	0.0	1.5	1	0	0	1	1	1	0	MarR	family
Radical_SAM	PF04055.21	gi|257052384|ref|YP_003130217.1|	-	1.1e-14	55.2	0.1	4.2e-14	53.3	0.0	1.9	2	0	0	2	2	2	1	Radical	SAM	superfamily
MatE	PF01554.18	gi|257052385|ref|YP_003130218.1|	-	1.7e-60	203.3	30.2	5.9e-36	123.6	10.4	2.6	3	0	0	3	3	3	2	MatE
Polysacc_synt_C	PF14667.6	gi|257052385|ref|YP_003130218.1|	-	5.5e-05	23.2	22.2	0.00025	21.1	9.0	5.5	4	3	0	4	4	4	2	Polysaccharide	biosynthesis	C-terminal	domain
Sarcoglycan_1	PF04790.13	gi|257052387|ref|YP_003130220.1|	-	0.00019	20.9	4.4	0.13	11.6	1.1	3.0	1	1	1	2	2	2	2	Sarcoglycan	complex	subunit	protein
DUF2345	PF10106.9	gi|257052387|ref|YP_003130220.1|	-	0.00047	20.0	10.8	0.0044	16.9	0.9	3.2	2	1	0	2	2	2	2	Uncharacterized	protein	conserved	in	bacteria	(DUF2345)
DUF1533	PF07550.11	gi|257052387|ref|YP_003130220.1|	-	0.03	14.2	0.5	14	5.6	0.0	3.4	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF1533)
DUF945	PF06097.11	gi|257052387|ref|YP_003130220.1|	-	0.044	12.9	8.2	0.045	12.9	6.6	1.7	1	1	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF945)
TRAM_2	PF18693.1	gi|257052387|ref|YP_003130220.1|	-	0.1	12.8	0.8	0.29	11.3	0.8	1.8	1	0	0	1	1	1	0	TRAM	domain
DNA_pol3_beta	PF00712.19	gi|257052387|ref|YP_003130220.1|	-	0.28	11.3	1.3	2.4	8.3	0.2	2.6	1	1	1	3	3	3	0	DNA	polymerase	III	beta	subunit,	N-terminal	domain
KRE9	PF05390.11	gi|257052387|ref|YP_003130220.1|	-	1.4	9.7	5.6	2.7	8.8	0.0	3.1	3	1	0	4	4	4	0	Yeast	cell	wall	synthesis	protein	KRE9/KNH1
Peptidase_S24	PF00717.23	gi|257052388|ref|YP_003130221.1|	-	0.0013	18.6	0.3	0.0028	17.6	0.2	1.6	1	1	0	1	1	1	1	Peptidase	S24-like
Peptidase_M73	PF12389.8	gi|257052389|ref|YP_003130222.1|	-	1.4e-11	44.6	6.7	3.4e-11	43.4	6.7	1.6	1	1	0	1	1	1	1	Camelysin	metallo-endopeptidase
PATR	PF12951.7	gi|257052389|ref|YP_003130222.1|	-	0.31	11.2	6.9	0.11	12.6	2.5	2.5	2	0	0	2	2	2	0	Passenger-associated-transport-repeat
TAT_signal	PF10518.9	gi|257052389|ref|YP_003130222.1|	-	0.69	9.9	7.3	1.2	9.1	7.3	1.4	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Peptidase_M73	PF12389.8	gi|257052390|ref|YP_003130223.1|	-	8.1e-14	51.9	4.2	1.2e-13	51.4	4.2	1.2	1	0	0	1	1	1	1	Camelysin	metallo-endopeptidase
PATR	PF12951.7	gi|257052390|ref|YP_003130223.1|	-	0.11	12.6	5.9	0.14	12.2	0.3	2.8	2	0	0	2	2	2	0	Passenger-associated-transport-repeat
TAT_signal	PF10518.9	gi|257052390|ref|YP_003130223.1|	-	0.5	10.3	6.5	0.79	9.7	6.5	1.3	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
TrkA_N	PF02254.18	gi|257052391|ref|YP_003130224.1|	-	2e-15	57.1	0.8	4.5e-15	55.9	0.8	1.6	1	0	0	1	1	1	1	TrkA-N	domain
TrkA_C	PF02080.21	gi|257052391|ref|YP_003130224.1|	-	3.7e-12	45.9	2.3	1.5e-09	37.5	0.0	3.3	4	0	0	4	4	4	2	TrkA-C	domain
Abhydrolase_4	PF08386.10	gi|257052391|ref|YP_003130224.1|	-	0.0099	16.0	0.1	0.095	12.8	0.0	2.2	2	0	0	2	2	2	1	TAP-like	protein
DUF2064	PF09837.9	gi|257052391|ref|YP_003130224.1|	-	0.11	12.3	0.0	0.53	10.1	0.0	2.1	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2064)
Deltameth_res	PF16020.5	gi|257052392|ref|YP_003130225.1|	-	0.12	12.3	0.5	0.16	11.9	0.5	1.2	1	0	0	1	1	1	0	Deltamethrin	resistance
Na_Ca_ex	PF01699.24	gi|257052393|ref|YP_003130226.1|	-	7.9e-40	136.3	32.4	9.7e-22	77.5	14.4	2.0	2	0	0	2	2	2	2	Sodium/calcium	exchanger	protein
LHC	PF00556.20	gi|257052393|ref|YP_003130226.1|	-	0.09	13.0	0.3	0.09	13.0	0.3	3.7	4	0	0	4	4	4	0	Antenna	complex	alpha/beta	subunit
TrkA_N	PF02254.18	gi|257052394|ref|YP_003130227.1|	-	5.5e-33	113.7	2.5	1e-32	112.8	2.5	1.5	1	0	0	1	1	1	1	TrkA-N	domain
Na_H_Exchanger	PF00999.21	gi|257052394|ref|YP_003130227.1|	-	4.5e-29	101.4	47.8	5.7e-29	101.1	47.8	1.1	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
TrkA_C	PF02080.21	gi|257052394|ref|YP_003130227.1|	-	7.3e-13	48.2	0.9	3.3e-12	46.1	0.0	2.4	2	0	0	2	2	2	1	TrkA-C	domain
NAD_binding_7	PF13241.6	gi|257052394|ref|YP_003130227.1|	-	1.7e-06	28.4	0.2	4.6e-06	27.0	0.2	1.7	1	0	0	1	1	1	1	Putative	NAD(P)-binding
Epimerase	PF01370.21	gi|257052394|ref|YP_003130227.1|	-	0.00016	21.2	0.2	0.0003	20.3	0.2	1.4	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
FAD_binding_3	PF01494.19	gi|257052394|ref|YP_003130227.1|	-	0.0006	19.2	0.0	0.00082	18.7	0.0	1.3	1	0	0	1	1	1	1	FAD	binding	domain
ApbA	PF02558.16	gi|257052394|ref|YP_003130227.1|	-	0.0011	18.7	0.1	0.0027	17.4	0.1	1.7	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
F420_oxidored	PF03807.17	gi|257052394|ref|YP_003130227.1|	-	0.0011	19.5	4.9	0.0038	17.8	0.2	3.3	3	1	0	4	4	3	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_Gly3P_dh_N	PF01210.23	gi|257052394|ref|YP_003130227.1|	-	0.0012	18.8	0.0	0.0052	16.8	0.0	2.1	1	1	1	2	2	2	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Sacchrp_dh_NADP	PF03435.18	gi|257052394|ref|YP_003130227.1|	-	0.0021	18.3	0.5	0.0056	16.9	0.5	1.8	1	1	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
UDPG_MGDP_dh_N	PF03721.14	gi|257052394|ref|YP_003130227.1|	-	0.0029	17.2	0.2	0.0048	16.5	0.2	1.3	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
DAO	PF01266.24	gi|257052394|ref|YP_003130227.1|	-	0.016	14.8	0.1	0.038	13.6	0.1	1.7	1	0	0	1	1	1	0	FAD	dependent	oxidoreductase
PglD_N	PF17836.1	gi|257052394|ref|YP_003130227.1|	-	0.027	15.1	0.6	0.058	14.0	0.6	1.6	1	0	0	1	1	1	0	PglD	N-terminal	domain
2-Hacid_dh_C	PF02826.19	gi|257052394|ref|YP_003130227.1|	-	0.028	13.8	0.1	0.052	12.9	0.1	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.12	gi|257052394|ref|YP_003130227.1|	-	0.042	13.4	0.0	0.089	12.4	0.0	1.5	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
Pyr_redox	PF00070.27	gi|257052394|ref|YP_003130227.1|	-	0.042	14.4	0.3	0.2	12.3	0.2	2.2	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
UPF0180	PF03698.13	gi|257052394|ref|YP_003130227.1|	-	0.045	13.9	0.2	0.11	12.7	0.2	1.6	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0180)
XdhC_C	PF13478.6	gi|257052394|ref|YP_003130227.1|	-	0.058	13.9	0.0	0.14	12.7	0.0	1.8	1	0	0	1	1	1	0	XdhC	Rossmann	domain
Lactamase_B	PF00753.27	gi|257052395|ref|YP_003130228.1|	-	1.5e-27	96.9	10.1	2.5e-27	96.2	10.1	1.3	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|257052395|ref|YP_003130228.1|	-	1.3e-06	28.0	3.0	3.1e-06	26.9	3.0	1.8	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Ribosomal_L40e	PF01020.17	gi|257052396|ref|YP_003130229.1|	-	2.5e-07	30.5	4.7	3e-07	30.2	4.7	1.1	1	0	0	1	1	1	1	Ribosomal	L40e	family
zinc_ribbon_2	PF13240.6	gi|257052396|ref|YP_003130229.1|	-	0.00057	19.5	2.8	0.00088	18.9	2.8	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.7	gi|257052396|ref|YP_003130229.1|	-	0.0016	18.4	1.0	0.0016	18.4	1.0	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
DNA_RNApol_7kD	PF03604.13	gi|257052396|ref|YP_003130229.1|	-	0.074	12.7	6.6	0.14	11.8	6.6	1.5	1	1	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
DHHC	PF01529.20	gi|257052396|ref|YP_003130229.1|	-	0.11	12.6	1.2	0.12	12.5	1.2	1.1	1	0	0	1	1	1	0	DHHC	palmitoyltransferase
LysR_substrate	PF03466.20	gi|257052397|ref|YP_003130230.1|	-	0.0022	17.4	0.0	0.0046	16.4	0.0	1.4	1	0	0	1	1	1	1	LysR	substrate	binding	domain
MAAL_C	PF07476.11	gi|257052397|ref|YP_003130230.1|	-	0.095	11.8	0.0	0.15	11.2	0.0	1.2	1	0	0	1	1	1	0	Methylaspartate	ammonia-lyase	C-terminus
Ribo_biogen_C	PF04034.13	gi|257052398|ref|YP_003130231.1|	-	6.2e-45	152.0	0.0	7.5e-45	151.7	0.0	1.1	1	0	0	1	1	1	1	Ribosome	biogenesis	protein,	C-terminal
RLI	PF04068.15	gi|257052398|ref|YP_003130231.1|	-	1.2e-07	31.4	0.0	2e-07	30.7	0.0	1.3	1	0	0	1	1	1	1	Possible	Fer4-like	domain	in	RNase	L	inhibitor,	RLI
AhpC-TSA	PF00578.21	gi|257052399|ref|YP_003130232.1|	-	2e-26	92.3	0.0	3.8e-26	91.4	0.0	1.5	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|257052399|ref|YP_003130232.1|	-	3.3e-17	62.6	0.0	5.7e-17	61.8	0.0	1.4	1	0	0	1	1	1	1	Redoxin
DUF1771	PF08590.10	gi|257052399|ref|YP_003130232.1|	-	0.043	14.2	2.0	0.043	14.2	2.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1771)
Styelin	PF17562.2	gi|257052399|ref|YP_003130232.1|	-	0.42	11.0	3.3	4	7.9	0.1	2.5	2	0	0	2	2	2	0	Styelin
SnoaL_2	PF12680.7	gi|257052400|ref|YP_003130233.1|	-	1.4e-12	48.1	1.2	1.6e-12	47.9	1.2	1.1	1	0	0	1	1	1	1	SnoaL-like	domain
SnoaL_4	PF13577.6	gi|257052400|ref|YP_003130233.1|	-	1.8e-05	24.9	0.1	2.9e-05	24.2	0.1	1.3	1	1	0	1	1	1	1	SnoaL-like	domain
DUF4440	PF14534.6	gi|257052400|ref|YP_003130233.1|	-	4e-05	24.0	0.1	5.4e-05	23.6	0.1	1.3	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4440)
SnoaL	PF07366.12	gi|257052400|ref|YP_003130233.1|	-	0.00065	19.5	0.0	0.00088	19.1	0.0	1.3	1	0	0	1	1	1	1	SnoaL-like	polyketide	cyclase
NTF2	PF02136.20	gi|257052400|ref|YP_003130233.1|	-	0.0026	18.3	0.0	0.0034	18.0	0.0	1.2	1	0	0	1	1	1	1	Nuclear	transport	factor	2	(NTF2)	domain
SnoaL_3	PF13474.6	gi|257052400|ref|YP_003130233.1|	-	0.0051	17.1	0.0	0.0067	16.7	0.0	1.3	1	0	0	1	1	1	1	SnoaL-like	domain
LEH	PF07858.12	gi|257052400|ref|YP_003130233.1|	-	0.0067	16.5	0.0	0.0079	16.3	0.0	1.1	1	0	0	1	1	1	1	Limonene-1,2-epoxide	hydrolase	catalytic	domain
FrhB_FdhB_C	PF04432.13	gi|257052402|ref|YP_003130235.1|	-	2.6e-29	102.0	0.0	6.3e-29	100.8	0.0	1.7	1	0	0	1	1	1	1	Coenzyme	F420	hydrogenase/dehydrogenase,	beta	subunit	C	terminus
FrhB_FdhB_N	PF04422.13	gi|257052402|ref|YP_003130235.1|	-	1.2e-21	76.7	0.0	2.4e-21	75.7	0.0	1.5	1	0	0	1	1	1	1	Coenzyme	F420	hydrogenase/dehydrogenase,	beta	subunit	N-term
Fer4_21	PF14697.6	gi|257052402|ref|YP_003130235.1|	-	1.2e-09	38.1	5.6	1.2e-09	38.1	5.6	2.1	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|257052402|ref|YP_003130235.1|	-	4e-08	34.1	5.2	0.016	16.1	1.4	3.8	3	0	0	3	3	3	2	4Fe-4S	double	cluster	binding	domain
Fer4_9	PF13187.6	gi|257052402|ref|YP_003130235.1|	-	2.2e-07	30.9	7.3	2.2e-07	30.9	7.3	2.7	3	0	0	3	3	2	1	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|257052402|ref|YP_003130235.1|	-	5.2e-07	29.2	21.3	1e-05	25.1	3.5	3.6	4	0	0	4	4	3	2	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|257052402|ref|YP_003130235.1|	-	7.2e-07	29.2	13.8	1.1e-06	28.6	10.0	2.9	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|257052402|ref|YP_003130235.1|	-	3.3e-05	24.4	22.3	0.00034	21.1	10.8	3.1	2	1	2	4	4	4	3	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|257052402|ref|YP_003130235.1|	-	0.00013	21.9	3.9	0.00013	21.9	3.9	3.3	3	0	0	3	3	3	1	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|257052402|ref|YP_003130235.1|	-	0.00099	19.1	3.4	0.00099	19.1	3.4	3.7	4	0	0	4	4	3	2	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|257052402|ref|YP_003130235.1|	-	0.0019	18.4	2.4	0.006	16.8	2.4	1.8	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|257052402|ref|YP_003130235.1|	-	0.003	18.0	4.9	0.003	18.0	4.9	3.7	4	0	0	4	4	3	2	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|257052402|ref|YP_003130235.1|	-	0.029	14.8	13.8	0.71	10.4	4.2	3.3	2	1	2	4	4	4	0	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|257052402|ref|YP_003130235.1|	-	0.067	14.2	4.2	0.067	14.2	4.2	3.8	4	0	0	4	4	2	0	4Fe-4S	binding	domain
Fer4_13	PF13370.6	gi|257052402|ref|YP_003130235.1|	-	0.079	13.5	15.4	0.28	11.7	2.9	3.5	3	0	0	3	3	3	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_17	PF13534.6	gi|257052402|ref|YP_003130235.1|	-	0.08	13.5	17.0	0.12	12.9	3.2	3.0	2	1	1	4	4	2	0	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|257052402|ref|YP_003130235.1|	-	2.6	8.8	17.6	1.6e+02	3.1	10.7	4.1	3	1	0	3	3	3	0	4Fe-4S	single	cluster	domain
Fer4_22	PF17179.4	gi|257052402|ref|YP_003130235.1|	-	5.4	7.9	12.1	3.9	8.4	0.9	2.9	3	0	0	3	3	2	0	4Fe-4S	dicluster	domain
NIR_SIR	PF01077.22	gi|257052403|ref|YP_003130236.1|	-	1.9e-47	160.7	0.0	1.7e-36	125.1	0.0	2.5	2	0	0	2	2	2	2	Nitrite	and	sulphite	reductase	4Fe-4S	domain
NIR_SIR_ferr	PF03460.17	gi|257052403|ref|YP_003130236.1|	-	1.3e-28	98.7	0.1	3.5e-13	49.2	0.0	3.3	2	1	0	2	2	2	2	Nitrite/Sulfite	reductase	ferredoxin-like	half	domain
SRP54	PF00448.22	gi|257052404|ref|YP_003130237.1|	-	4e-67	225.7	0.2	5.4e-67	225.2	0.2	1.2	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
SRP54_N	PF02881.19	gi|257052404|ref|YP_003130237.1|	-	3e-11	43.4	0.6	3e-11	43.4	0.6	1.7	2	0	0	2	2	1	1	SRP54-type	protein,	helical	bundle	domain
APS_kinase	PF01583.20	gi|257052404|ref|YP_003130237.1|	-	8.1e-07	29.1	0.1	2.2e-06	27.6	0.0	1.7	2	0	0	2	2	2	1	Adenylylsulphate	kinase
Zeta_toxin	PF06414.12	gi|257052404|ref|YP_003130237.1|	-	1.8e-05	24.1	0.0	3e-05	23.4	0.0	1.3	1	0	0	1	1	1	1	Zeta	toxin
AAA_30	PF13604.6	gi|257052404|ref|YP_003130237.1|	-	0.00012	21.9	0.5	0.0003	20.6	0.5	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_17	PF13207.6	gi|257052404|ref|YP_003130237.1|	-	0.00027	21.4	0.0	0.0007	20.0	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|257052404|ref|YP_003130237.1|	-	0.00035	20.6	0.0	0.00075	19.6	0.0	1.6	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_16	PF13191.6	gi|257052404|ref|YP_003130237.1|	-	0.00038	20.9	3.4	0.0012	19.3	0.1	2.4	2	1	0	2	2	2	1	AAA	ATPase	domain
Thymidylate_kin	PF02223.17	gi|257052404|ref|YP_003130237.1|	-	0.00075	19.2	0.1	0.01	15.5	0.0	2.2	2	0	0	2	2	2	1	Thymidylate	kinase
AAA_28	PF13521.6	gi|257052404|ref|YP_003130237.1|	-	0.00093	19.5	3.0	0.0032	17.7	0.2	2.9	3	1	0	3	3	3	1	AAA	domain
MeaB	PF03308.16	gi|257052404|ref|YP_003130237.1|	-	0.00097	18.2	0.0	0.0018	17.3	0.0	1.4	1	0	0	1	1	1	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_19	PF13245.6	gi|257052404|ref|YP_003130237.1|	-	0.0014	19.0	0.1	0.0026	18.1	0.1	1.4	1	0	0	1	1	1	1	AAA	domain
NTPase_1	PF03266.15	gi|257052404|ref|YP_003130237.1|	-	0.0051	16.7	0.1	0.0094	15.9	0.1	1.4	1	0	0	1	1	1	1	NTPase
KTI12	PF08433.10	gi|257052404|ref|YP_003130237.1|	-	0.008	15.7	0.0	0.012	15.0	0.0	1.2	1	0	0	1	1	1	1	Chromatin	associated	protein	KTI12
AAA_33	PF13671.6	gi|257052404|ref|YP_003130237.1|	-	0.01	16.0	0.2	0.027	14.7	0.1	1.9	2	1	0	2	2	2	0	AAA	domain
PPK2	PF03976.14	gi|257052404|ref|YP_003130237.1|	-	0.017	14.6	0.0	0.028	13.9	0.0	1.2	1	0	0	1	1	1	0	Polyphosphate	kinase	2	(PPK2)
DUF2075	PF09848.9	gi|257052404|ref|YP_003130237.1|	-	0.02	14.2	0.0	0.031	13.5	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
cobW	PF02492.19	gi|257052404|ref|YP_003130237.1|	-	0.022	14.3	0.8	0.036	13.6	0.1	1.7	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_22	PF13401.6	gi|257052404|ref|YP_003130237.1|	-	0.029	14.7	0.0	0.068	13.4	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
6PF2K	PF01591.18	gi|257052404|ref|YP_003130237.1|	-	0.03	13.6	0.0	0.049	12.9	0.0	1.3	1	0	0	1	1	1	0	6-phosphofructo-2-kinase
ArsA_ATPase	PF02374.15	gi|257052404|ref|YP_003130237.1|	-	0.035	13.3	0.5	0.075	12.2	0.1	1.6	2	0	0	2	2	2	0	Anion-transporting	ATPase
ATP_bind_1	PF03029.17	gi|257052404|ref|YP_003130237.1|	-	0.044	13.6	0.1	0.081	12.7	0.1	1.4	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
ParA	PF10609.9	gi|257052404|ref|YP_003130237.1|	-	0.045	13.2	0.0	0.073	12.5	0.0	1.2	1	0	0	1	1	1	0	NUBPL	iron-transfer	P-loop	NTPase
RsgA_GTPase	PF03193.16	gi|257052404|ref|YP_003130237.1|	-	0.051	13.5	0.0	0.095	12.6	0.0	1.4	1	0	0	1	1	1	0	RsgA	GTPase
AAA_14	PF13173.6	gi|257052404|ref|YP_003130237.1|	-	0.06	13.4	0.0	0.14	12.1	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
AAA	PF00004.29	gi|257052404|ref|YP_003130237.1|	-	0.068	13.6	0.1	0.15	12.5	0.1	1.8	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
MobB	PF03205.14	gi|257052404|ref|YP_003130237.1|	-	0.088	12.7	0.1	0.21	11.5	0.1	1.6	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_31	PF13614.6	gi|257052404|ref|YP_003130237.1|	-	0.1	12.5	0.1	0.34	10.8	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
NACHT	PF05729.12	gi|257052404|ref|YP_003130237.1|	-	0.1	12.5	0.0	0.2	11.5	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
AAA_18	PF13238.6	gi|257052404|ref|YP_003130237.1|	-	0.11	13.0	0.0	0.29	11.7	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
AAA_24	PF13479.6	gi|257052404|ref|YP_003130237.1|	-	0.14	11.8	0.1	0.32	10.7	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_7	PF12775.7	gi|257052404|ref|YP_003130237.1|	-	0.17	11.4	0.0	0.46	10.0	0.0	1.7	2	0	0	2	2	2	0	P-loop	containing	dynein	motor	region
KAP_NTPase	PF07693.14	gi|257052404|ref|YP_003130237.1|	-	0.21	10.8	0.0	0.28	10.4	0.0	1.2	1	0	0	1	1	1	0	KAP	family	P-loop	domain
MMR_HSR1	PF01926.23	gi|257052404|ref|YP_003130237.1|	-	0.24	11.5	0.7	1.5	8.9	0.7	2.1	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
AF-4	PF05110.13	gi|257052404|ref|YP_003130237.1|	-	5.8	4.9	10.5	7.5	4.5	10.5	1.0	1	0	0	1	1	1	0	AF-4	proto-oncoprotein
Prefoldin	PF02996.17	gi|257052405|ref|YP_003130238.1|	-	3.5e-26	91.5	10.4	3.5e-26	91.5	10.4	2.2	1	1	2	3	3	2	1	Prefoldin	subunit
TSC22	PF01166.18	gi|257052405|ref|YP_003130238.1|	-	0.00064	20.0	8.2	0.00064	20.0	8.2	2.4	2	0	0	2	2	2	1	TSC-22/dip/bun	family
APG6_N	PF17675.1	gi|257052405|ref|YP_003130238.1|	-	0.0008	20.0	31.4	0.021	15.4	15.6	2.1	2	0	0	2	2	2	2	Apg6	coiled-coil	region
YabA	PF06156.13	gi|257052405|ref|YP_003130238.1|	-	0.00098	19.7	18.4	0.12	13.1	0.7	2.1	2	0	0	2	2	2	2	Initiation	control	protein	YabA
Prefoldin_2	PF01920.20	gi|257052405|ref|YP_003130238.1|	-	0.0013	18.7	12.4	0.0013	18.7	12.4	3.7	1	1	1	3	3	2	2	Prefoldin	subunit
ZapB	PF06005.12	gi|257052405|ref|YP_003130238.1|	-	0.0016	18.9	36.8	0.0022	18.4	20.2	2.2	2	0	0	2	2	2	1	Cell	division	protein	ZapB
KASH_CCD	PF14662.6	gi|257052405|ref|YP_003130238.1|	-	0.0022	17.8	25.0	0.094	12.5	3.3	2.0	2	0	0	2	2	2	2	Coiled-coil	region	of	CCDC155	or	KASH
CENP-F_leu_zip	PF10473.9	gi|257052405|ref|YP_003130238.1|	-	0.0023	18.0	22.2	0.098	12.7	12.0	2.2	2	0	0	2	2	2	2	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
DUF4515	PF14988.6	gi|257052405|ref|YP_003130238.1|	-	0.0028	17.5	23.0	0.0052	16.7	12.2	2.2	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4515)
Tropomyosin_1	PF12718.7	gi|257052405|ref|YP_003130238.1|	-	0.0035	17.5	23.4	0.095	12.9	3.4	2.1	2	0	0	2	2	2	2	Tropomyosin	like
MIS13	PF08202.11	gi|257052405|ref|YP_003130238.1|	-	0.0037	16.6	10.9	0.0054	16.1	10.9	1.1	1	0	0	1	1	1	1	Mis12-Mtw1	protein	family
BLOC1_2	PF10046.9	gi|257052405|ref|YP_003130238.1|	-	0.0056	16.9	5.9	0.0056	16.9	5.9	3.2	2	2	1	3	3	3	2	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
HAUS-augmin3	PF14932.6	gi|257052405|ref|YP_003130238.1|	-	0.0067	16.0	20.2	0.057	13.0	0.9	2.1	2	0	0	2	2	2	1	HAUS	augmin-like	complex	subunit	3
Fib_alpha	PF08702.10	gi|257052405|ref|YP_003130238.1|	-	0.0074	16.5	15.4	0.36	11.0	9.8	2.2	2	0	0	2	2	2	1	Fibrinogen	alpha/beta	chain	family
ATP-synt_D	PF01813.17	gi|257052405|ref|YP_003130238.1|	-	0.0095	15.8	10.7	0.075	12.9	4.3	2.1	2	0	0	2	2	2	1	ATP	synthase	subunit	D
Spc24	PF08286.11	gi|257052405|ref|YP_003130238.1|	-	0.015	15.5	18.6	0.15	12.3	0.7	2.3	2	0	0	2	2	2	0	Spc24	subunit	of	Ndc80
DUF4795	PF16043.5	gi|257052405|ref|YP_003130238.1|	-	0.018	14.7	13.5	0.52	9.9	6.7	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4795)
OmpH	PF03938.14	gi|257052405|ref|YP_003130238.1|	-	0.018	15.4	34.3	0.15	12.4	22.3	2.1	2	0	0	2	2	2	0	Outer	membrane	protein	(OmpH-like)
FliD_C	PF07195.12	gi|257052405|ref|YP_003130238.1|	-	0.018	14.4	14.1	0.028	13.8	7.1	2.1	2	0	0	2	2	2	0	Flagellar	hook-associated	protein	2	C-terminus
Sipho_Gp157	PF05565.11	gi|257052405|ref|YP_003130238.1|	-	0.019	15.0	14.6	0.15	12.0	6.2	2.2	2	0	0	2	2	2	0	Siphovirus	Gp157
YlqD	PF11068.8	gi|257052405|ref|YP_003130238.1|	-	0.02	15.2	32.0	0.27	11.6	3.6	2.4	2	0	0	2	2	2	0	YlqD	protein
Syntaxin_2	PF14523.6	gi|257052405|ref|YP_003130238.1|	-	0.021	15.2	15.8	0.22	11.9	7.2	2.1	2	0	0	2	2	2	0	Syntaxin-like	protein
NPV_P10	PF05531.12	gi|257052405|ref|YP_003130238.1|	-	0.023	15.1	21.8	0.12	12.9	2.8	2.5	2	1	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
CEP209_CC5	PF16574.5	gi|257052405|ref|YP_003130238.1|	-	0.026	14.7	1.3	0.026	14.7	1.3	2.2	2	0	0	2	2	2	0	Coiled-coil	region	of	centrosome	protein	CE290
DivIC	PF04977.15	gi|257052405|ref|YP_003130238.1|	-	0.026	14.3	8.4	0.026	14.3	8.4	3.1	2	1	1	3	3	2	0	Septum	formation	initiator
Ax_dynein_light	PF10211.9	gi|257052405|ref|YP_003130238.1|	-	0.027	14.4	23.6	0.51	10.3	2.8	2.1	2	0	0	2	2	2	0	Axonemal	dynein	light	chain
bZIP_1	PF00170.21	gi|257052405|ref|YP_003130238.1|	-	0.032	14.3	16.9	0.067	13.3	7.9	2.8	2	1	0	2	2	2	0	bZIP	transcription	factor
UPF0242	PF06785.11	gi|257052405|ref|YP_003130238.1|	-	0.037	14.1	24.4	0.044	13.9	13.3	2.1	2	0	0	2	2	2	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
Spc7	PF08317.11	gi|257052405|ref|YP_003130238.1|	-	0.039	12.8	25.3	0.2	10.5	3.9	2.1	2	0	0	2	2	2	0	Spc7	kinetochore	protein
Syntaxin-6_N	PF09177.11	gi|257052405|ref|YP_003130238.1|	-	0.044	14.3	14.2	0.55	10.8	1.4	2.2	2	0	0	2	2	2	0	Syntaxin	6,	N-terminal
Seryl_tRNA_N	PF02403.22	gi|257052405|ref|YP_003130238.1|	-	0.05	13.8	21.2	0.054	13.7	2.4	2.6	2	1	0	2	2	2	0	Seryl-tRNA	synthetase	N-terminal	domain
DUF4618	PF15397.6	gi|257052405|ref|YP_003130238.1|	-	0.055	12.9	20.5	0.54	9.6	1.5	2.3	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4618)
Baculo_PEP_C	PF04513.12	gi|257052405|ref|YP_003130238.1|	-	0.069	13.2	12.3	1.9	8.5	0.2	2.1	2	0	0	2	2	2	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Sec34	PF04136.15	gi|257052405|ref|YP_003130238.1|	-	0.075	12.9	19.8	0.24	11.3	1.4	2.1	2	0	0	2	2	2	0	Sec34-like	family
DUF4337	PF14235.6	gi|257052405|ref|YP_003130238.1|	-	0.076	13.1	17.6	0.13	12.3	9.6	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4337)
GPS2_interact	PF15784.5	gi|257052405|ref|YP_003130238.1|	-	0.086	13.3	19.7	0.52	10.8	8.3	2.2	2	0	0	2	2	2	0	G-protein	pathway	suppressor	2-interacting	domain
DUF4988	PF16378.5	gi|257052405|ref|YP_003130238.1|	-	0.098	12.3	7.2	2.3	7.8	1.8	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function
zf-CpG_bind_C	PF12269.8	gi|257052405|ref|YP_003130238.1|	-	0.1	12.4	14.5	0.69	9.7	0.4	2.1	2	0	0	2	2	2	0	CpG	binding	protein	zinc	finger	C	terminal	domain
Methyltransf_15	PF09445.10	gi|257052405|ref|YP_003130238.1|	-	0.11	12.1	0.9	1.1	8.8	0.9	2.5	1	1	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
TMF_TATA_bd	PF12325.8	gi|257052405|ref|YP_003130238.1|	-	0.11	12.7	21.5	1.3	9.2	3.3	2.3	2	0	0	2	2	2	0	TATA	element	modulatory	factor	1	TATA	binding
DUF3450	PF11932.8	gi|257052405|ref|YP_003130238.1|	-	0.12	11.7	29.9	0.78	9.0	18.5	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3450)
Jnk-SapK_ap_N	PF09744.9	gi|257052405|ref|YP_003130238.1|	-	0.13	12.4	26.0	0.083	13.1	13.9	2.1	2	0	0	2	2	2	0	JNK_SAPK-associated	protein-1
Tektin	PF03148.14	gi|257052405|ref|YP_003130238.1|	-	0.21	10.3	21.8	0.2	10.4	8.3	2.2	2	0	0	2	2	2	0	Tektin	family
Cytochrom_C_2	PF01322.20	gi|257052405|ref|YP_003130238.1|	-	0.22	12.4	9.0	0.24	12.3	4.1	2.1	2	0	0	2	2	2	0	Cytochrome	C'
Laminin_II	PF06009.12	gi|257052405|ref|YP_003130238.1|	-	0.25	11.3	14.2	1.9	8.5	0.8	2.2	2	0	0	2	2	2	0	Laminin	Domain	II
M	PF02370.16	gi|257052405|ref|YP_003130238.1|	-	0.27	11.9	18.5	1.6	9.5	3.7	3.5	3	0	0	3	3	2	0	M	protein	repeat
ABC_tran_CTD	PF16326.5	gi|257052405|ref|YP_003130238.1|	-	0.27	11.5	35.2	1.2	9.4	10.8	2.5	2	0	0	2	2	2	0	ABC	transporter	C-terminal	domain
Hemerythrin	PF01814.23	gi|257052405|ref|YP_003130238.1|	-	0.29	11.7	7.9	1.8	9.2	1.5	2.3	1	1	1	2	2	2	0	Hemerythrin	HHE	cation	binding	domain
ORF6C	PF10552.9	gi|257052405|ref|YP_003130238.1|	-	0.3	11.2	13.9	0.5	10.5	0.3	2.2	2	0	0	2	2	2	0	ORF6C	domain
DUF1515	PF07439.11	gi|257052405|ref|YP_003130238.1|	-	0.32	11.0	10.3	1.2	9.2	0.2	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1515)
COG2	PF06148.11	gi|257052405|ref|YP_003130238.1|	-	0.35	11.0	14.1	2.2	8.4	0.4	2.1	2	0	0	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
DUF1664	PF07889.12	gi|257052405|ref|YP_003130238.1|	-	0.36	10.9	20.2	0.66	10.0	1.7	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1664)
Mod_r	PF07200.13	gi|257052405|ref|YP_003130238.1|	-	0.37	10.9	21.2	0.39	10.8	10.2	2.0	2	0	0	2	2	2	0	Modifier	of	rudimentary	(Mod(r))	protein
FapA	PF03961.13	gi|257052405|ref|YP_003130238.1|	-	0.38	9.3	18.3	1.1	7.8	1.7	2.0	1	1	1	2	2	2	0	Flagellar	Assembly	Protein	A
Not3	PF04065.15	gi|257052405|ref|YP_003130238.1|	-	0.39	10.1	19.5	0.25	10.8	9.8	2.0	2	0	0	2	2	2	0	Not1	N-terminal	domain,	CCR4-Not	complex	component
Occludin_ELL	PF07303.13	gi|257052405|ref|YP_003130238.1|	-	0.39	11.4	14.4	1.9	9.3	7.0	2.2	2	0	0	2	2	2	0	Occludin	homology	domain
LPP	PF04728.13	gi|257052405|ref|YP_003130238.1|	-	0.41	11.1	22.3	1.7	9.1	11.6	3.6	2	2	1	3	3	3	0	Lipoprotein	leucine-zipper
TFR_dimer	PF04253.15	gi|257052405|ref|YP_003130238.1|	-	0.42	10.7	7.1	1.1	9.3	1.3	2.4	2	1	0	2	2	2	0	Transferrin	receptor-like	dimerisation	domain
DUF2203	PF09969.9	gi|257052405|ref|YP_003130238.1|	-	0.43	11.3	13.2	0.88	10.3	4.6	2.3	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2203)
DUF4407	PF14362.6	gi|257052405|ref|YP_003130238.1|	-	0.43	9.9	23.0	1.6	8.0	23.0	1.7	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
TMPIT	PF07851.13	gi|257052405|ref|YP_003130238.1|	-	0.47	9.7	13.4	1.8	7.8	8.2	2.0	2	0	0	2	2	2	0	TMPIT-like	protein
CorA	PF01544.18	gi|257052405|ref|YP_003130238.1|	-	0.47	9.7	18.5	2	7.7	18.5	1.8	1	1	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
SecA_DEAD	PF07517.14	gi|257052405|ref|YP_003130238.1|	-	0.48	9.7	8.2	5.3	6.2	0.0	2.1	2	0	0	2	2	2	0	SecA	DEAD-like	domain
BshC	PF10079.9	gi|257052405|ref|YP_003130238.1|	-	0.54	8.9	15.0	0.48	9.1	8.0	2.0	2	0	0	2	2	2	0	Bacillithiol	biosynthesis	BshC
FlxA	PF14282.6	gi|257052405|ref|YP_003130238.1|	-	0.6	10.1	41.5	0.64	10.0	29.4	2.3	2	0	0	2	2	2	0	FlxA-like	protein
Phage_GPO	PF05929.11	gi|257052405|ref|YP_003130238.1|	-	0.64	9.6	15.9	2.3	7.8	0.3	2.0	2	0	0	2	2	2	0	Phage	capsid	scaffolding	protein	(GPO)	serine	peptidase
LCD1	PF09798.9	gi|257052405|ref|YP_003130238.1|	-	0.66	8.4	17.0	0.17	10.4	10.5	1.9	2	0	0	2	2	2	0	DNA	damage	checkpoint	protein
RmuC	PF02646.16	gi|257052405|ref|YP_003130238.1|	-	0.69	9.0	17.3	1.5	7.9	0.3	2.1	2	0	0	2	2	2	0	RmuC	family
Fzo_mitofusin	PF04799.13	gi|257052405|ref|YP_003130238.1|	-	0.7	9.4	18.0	2	8.0	1.9	2.3	2	0	0	2	2	2	0	fzo-like	conserved	region
CENP-H	PF05837.12	gi|257052405|ref|YP_003130238.1|	-	0.7	10.3	19.1	0.28	11.6	8.2	2.2	2	0	0	2	2	2	0	Centromere	protein	H	(CENP-H)
Muted	PF14942.6	gi|257052405|ref|YP_003130238.1|	-	0.74	10.1	21.2	2	8.8	12.1	2.1	2	0	0	2	2	2	0	Organelle	biogenesis,	Muted-like	protein
Plk4_PB2	PF18409.1	gi|257052405|ref|YP_003130238.1|	-	0.75	10.5	5.5	8.3	7.1	2.8	2.1	2	0	0	2	2	2	0	Polo-like	Kinase	4	Polo	Box	2
DUF4446	PF14584.6	gi|257052405|ref|YP_003130238.1|	-	0.77	9.7	12.5	5.2	7.0	7.1	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4446)
AAA_13	PF13166.6	gi|257052405|ref|YP_003130238.1|	-	0.81	8.2	19.9	0.85	8.2	7.6	2.0	2	0	0	2	2	2	0	AAA	domain
XhlA	PF10779.9	gi|257052405|ref|YP_003130238.1|	-	0.85	9.9	18.8	0.13	12.5	2.7	2.6	2	1	1	3	3	3	0	Haemolysin	XhlA
AAA_lid_9	PF17871.1	gi|257052405|ref|YP_003130238.1|	-	0.91	9.5	15.8	2.6	8.0	9.6	2.3	2	0	0	2	2	2	0	AAA	lid	domain
DASH_Dam1	PF08653.10	gi|257052405|ref|YP_003130238.1|	-	0.96	9.3	12.3	13	5.7	0.3	3.4	2	2	0	2	2	2	0	DASH	complex	subunit	Dam1
PHM7_cyt	PF14703.6	gi|257052405|ref|YP_003130238.1|	-	0.98	9.6	11.2	9.3	6.4	6.1	2.2	2	0	0	2	2	2	0	Cytosolic	domain	of	10TM	putative	phosphate	transporter
Atg14	PF10186.9	gi|257052405|ref|YP_003130238.1|	-	1	8.4	13.4	1.9	7.5	6.8	2.0	2	0	0	2	2	2	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
DUF3552	PF12072.8	gi|257052405|ref|YP_003130238.1|	-	1.1	8.6	27.8	1.5	8.2	16.8	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3552)
Nmad5	PF18757.1	gi|257052405|ref|YP_003130238.1|	-	1.1	9.4	9.9	2	8.6	7.5	2.1	1	1	1	2	2	2	0	Nucleotide	modification	associated	domain	5
ERM	PF00769.19	gi|257052405|ref|YP_003130238.1|	-	1.1	9.0	32.5	0.65	9.8	5.3	2.1	2	0	0	2	2	2	0	Ezrin/radixin/moesin	family
HAUS5	PF14817.6	gi|257052405|ref|YP_003130238.1|	-	1.2	7.8	21.2	0.74	8.5	1.3	2.0	2	0	0	2	2	2	0	HAUS	augmin-like	complex	subunit	5
Golgin_A5	PF09787.9	gi|257052405|ref|YP_003130238.1|	-	1.2	8.5	28.0	0.51	9.8	17.4	2.0	2	0	0	2	2	2	0	Golgin	subfamily	A	member	5
DHR10	PF18595.1	gi|257052405|ref|YP_003130238.1|	-	1.2	9.2	31.5	0.41	10.7	14.8	2.3	2	0	0	2	2	2	0	Designed	helical	repeat	protein	10	domain
Pro_CA	PF00484.19	gi|257052405|ref|YP_003130238.1|	-	1.3	9.3	6.5	6	7.1	3.6	2.0	2	0	0	2	2	2	0	Carbonic	anhydrase
DASH_Spc19	PF08287.11	gi|257052405|ref|YP_003130238.1|	-	1.4	8.8	17.8	0.96	9.3	10.7	2.1	2	0	0	2	2	2	0	Spc19
SKA2	PF16740.5	gi|257052405|ref|YP_003130238.1|	-	1.6	8.6	23.4	0.43	10.4	0.8	2.3	2	1	0	2	2	2	0	Spindle	and	kinetochore-associated	protein	2
T2SSM	PF04612.12	gi|257052405|ref|YP_003130238.1|	-	1.6	8.8	15.2	2.7	8.1	0.1	2.3	2	0	0	2	2	2	0	Type	II	secretion	system	(T2SS),	protein	M
HemX	PF04375.14	gi|257052405|ref|YP_003130238.1|	-	1.7	7.9	26.5	1.3	8.2	1.2	2.1	2	0	0	2	2	2	0	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
DUF724	PF05266.14	gi|257052405|ref|YP_003130238.1|	-	1.7	8.4	18.7	3.7	7.3	10.9	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF724)
SHE3	PF17078.5	gi|257052405|ref|YP_003130238.1|	-	1.8	8.3	21.9	1	9.0	12.4	2.1	2	0	0	2	2	2	0	SWI5-dependent	HO	expression	protein	3
EzrA	PF06160.12	gi|257052405|ref|YP_003130238.1|	-	1.8	6.7	22.1	1.7	6.7	9.1	2.1	2	0	0	2	2	2	0	Septation	ring	formation	regulator,	EzrA
DUF4164	PF13747.6	gi|257052405|ref|YP_003130238.1|	-	1.8	8.9	17.5	2.1	8.7	2.9	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4164)
Med4	PF10018.9	gi|257052405|ref|YP_003130238.1|	-	2	8.1	17.6	2.4	7.8	0.7	2.3	2	0	0	2	2	2	0	Vitamin-D-receptor	interacting	Mediator	subunit	4
DUF2312	PF10073.9	gi|257052405|ref|YP_003130238.1|	-	2.1	8.1	17.8	2.9	7.6	5.2	3.0	2	1	1	3	3	3	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2312)
Ran-binding	PF05508.11	gi|257052405|ref|YP_003130238.1|	-	2.1	7.3	10.7	4.4	6.2	0.1	2.1	2	0	0	2	2	2	0	RanGTP-binding	protein
PRKG1_interact	PF15898.5	gi|257052405|ref|YP_003130238.1|	-	2.3	9.2	17.2	7.4	7.5	0.3	2.3	2	0	0	2	2	2	0	cGMP-dependent	protein	kinase	interacting	domain
EMP24_GP25L	PF01105.24	gi|257052405|ref|YP_003130238.1|	-	2.3	8.1	14.9	1.2	9.1	6.9	2.2	2	0	0	2	2	2	0	emp24/gp25L/p24	family/GOLD
Prominin	PF05478.11	gi|257052405|ref|YP_003130238.1|	-	2.4	6.0	10.3	4.5	5.1	0.4	2.0	2	0	0	2	2	2	0	Prominin
HALZ	PF02183.18	gi|257052405|ref|YP_003130238.1|	-	2.9	8.2	15.4	0.22	11.8	1.3	2.8	2	1	0	2	2	2	0	Homeobox	associated	leucine	zipper
ISG65-75	PF11727.8	gi|257052405|ref|YP_003130238.1|	-	3	7.0	11.5	3.6	6.7	0.7	2.0	2	0	0	2	2	2	0	Invariant	surface	glycoprotein
UPF0449	PF15136.6	gi|257052405|ref|YP_003130238.1|	-	3	8.4	21.0	6.7	7.2	2.4	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0449
DUF2072	PF09845.9	gi|257052405|ref|YP_003130238.1|	-	3.5	7.9	16.3	1.5	9.1	2.3	2.2	2	0	0	2	2	2	0	Zn-ribbon	containing	protein
Synaptobrevin	PF00957.21	gi|257052405|ref|YP_003130238.1|	-	3.6	7.4	16.7	0.16	11.8	7.1	2.3	2	0	0	2	2	2	0	Synaptobrevin
IFT57	PF10498.9	gi|257052405|ref|YP_003130238.1|	-	3.7	6.4	22.0	1.5	7.7	2.0	2.1	2	0	0	2	2	2	0	Intra-flagellar	transport	protein	57
L31	PF09784.9	gi|257052405|ref|YP_003130238.1|	-	4	7.9	7.1	12	6.4	3.5	2.3	2	0	0	2	2	2	0	Mitochondrial	ribosomal	protein	L31
Acetyltransf_11	PF13720.6	gi|257052405|ref|YP_003130238.1|	-	4.1	7.9	7.9	11	6.6	0.2	2.3	2	0	0	2	2	2	0	Udp	N-acetylglucosamine	O-acyltransferase;	Domain	2
THOC7	PF05615.13	gi|257052405|ref|YP_003130238.1|	-	4.2	7.7	27.4	2	8.7	5.0	2.6	2	1	0	2	2	2	0	Tho	complex	subunit	7
RasGAP_C	PF03836.15	gi|257052405|ref|YP_003130238.1|	-	4.4	7.5	19.5	7	6.8	10.0	2.1	2	0	0	2	2	2	0	RasGAP	C-terminus
DUF16	PF01519.16	gi|257052405|ref|YP_003130238.1|	-	4.5	7.8	22.1	2.1	8.9	10.6	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	DUF16
Rh5	PF18515.1	gi|257052405|ref|YP_003130238.1|	-	4.5	6.5	8.9	2.2	7.5	2.6	2.0	2	0	0	2	2	2	0	Rh5	coiled-coil	domain
DUF2730	PF10805.8	gi|257052405|ref|YP_003130238.1|	-	4.7	7.4	12.3	6	7.0	0.6	2.5	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2730)
DUF848	PF05852.11	gi|257052405|ref|YP_003130238.1|	-	5	7.2	16.0	2.4	8.3	2.3	2.2	2	0	0	2	2	2	0	Gammaherpesvirus	protein	of	unknown	function	(DUF848)
DIRP	PF06584.13	gi|257052405|ref|YP_003130238.1|	-	5.1	7.3	8.1	14	6.0	0.0	2.2	2	0	0	2	2	2	0	DIRP
DUF948	PF06103.11	gi|257052405|ref|YP_003130238.1|	-	5.3	7.4	14.2	8	6.8	1.0	2.2	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
WXG100	PF06013.12	gi|257052405|ref|YP_003130238.1|	-	5.7	7.3	27.3	1.1	9.5	3.0	2.5	2	1	0	2	2	2	0	Proteins	of	100	residues	with	WXG
GAS	PF13851.6	gi|257052405|ref|YP_003130238.1|	-	5.9	6.2	26.7	2.7	7.3	3.1	2.1	1	1	0	2	2	2	0	Growth-arrest	specific	micro-tubule	binding
GrpE	PF01025.19	gi|257052405|ref|YP_003130238.1|	-	6	6.5	20.4	3.4	7.3	10.6	2.1	2	0	0	2	2	2	0	GrpE
SKA1	PF07160.12	gi|257052405|ref|YP_003130238.1|	-	6.6	6.5	18.4	5.4	6.8	1.3	2.0	2	0	0	2	2	2	0	Spindle	and	kinetochore-associated	protein	1
Tho2	PF11262.8	gi|257052405|ref|YP_003130238.1|	-	6.8	5.8	13.6	1	8.5	5.2	2.0	2	0	0	2	2	2	0	Transcription	factor/nuclear	export	subunit	protein	2
JIP_LZII	PF16471.5	gi|257052405|ref|YP_003130238.1|	-	6.8	6.9	19.5	3.3	8.0	7.5	2.4	2	0	0	2	2	2	0	JNK-interacting	protein	leucine	zipper	II
MctB	PF11382.8	gi|257052405|ref|YP_003130238.1|	-	7	6.3	16.8	9.5	5.8	1.1	2.2	2	0	0	2	2	2	0	Copper	transport	outer	membrane	protein,	MctB
AAA_23	PF13476.6	gi|257052405|ref|YP_003130238.1|	-	8.3	6.9	29.4	3.5	8.1	13.1	2.0	2	0	0	2	2	2	0	AAA	domain
TraF_2	PF13729.6	gi|257052405|ref|YP_003130238.1|	-	8.5	5.6	14.9	3.1	7.1	7.9	2.0	1	1	1	2	2	2	0	F	plasmid	transfer	operon,	TraF,	protein
Ribosomal_L18A	PF01775.17	gi|257052406|ref|YP_003130239.1|	-	4.4e-10	39.7	0.0	4.8e-10	39.6	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	proteins	50S-L18Ae/60S-L20/60S-L18A
Aldolase	PF01081.19	gi|257052407|ref|YP_003130240.1|	-	4.6e-41	140.4	1.4	5.2e-41	140.2	1.4	1.0	1	0	0	1	1	1	1	KDPG	and	KHG	aldolase
TMP-TENI	PF02581.17	gi|257052407|ref|YP_003130240.1|	-	0.00061	19.2	1.7	0.0085	15.4	1.7	2.9	1	1	0	1	1	1	1	Thiamine	monophosphate	synthase
DHO_dh	PF01180.21	gi|257052407|ref|YP_003130240.1|	-	0.0091	15.2	3.4	1.4	8.0	0.1	3.0	1	1	2	3	3	3	3	Dihydroorotate	dehydrogenase
PEP_hydrolase	PF09370.10	gi|257052407|ref|YP_003130240.1|	-	0.0097	15.2	0.5	0.029	13.6	0.1	1.8	1	1	1	2	2	2	1	Phosphoenolpyruvate	hydrolase-like
FMN_dh	PF01070.18	gi|257052407|ref|YP_003130240.1|	-	0.037	13.0	0.5	0.079	12.0	0.5	1.6	1	1	0	1	1	1	0	FMN-dependent	dehydrogenase
AbiEii	PF08843.11	gi|257052409|ref|YP_003130242.1|	-	8.2e-14	52.1	0.1	1.2e-13	51.6	0.1	1.2	1	0	0	1	1	1	1	Nucleotidyl	transferase	AbiEii	toxin,	Type	IV	TA	system
AbiEi_4	PF13338.6	gi|257052410|ref|YP_003130243.1|	-	0.034	14.3	0.1	0.091	12.9	0.1	1.7	1	0	0	1	1	1	0	Transcriptional	regulator,	AbiEi	antitoxin
Mrr_N	PF14338.6	gi|257052410|ref|YP_003130243.1|	-	0.081	13.1	0.0	0.21	11.8	0.0	1.7	1	0	0	1	1	1	0	Mrr	N-terminal	domain
Aldo_ket_red	PF00248.21	gi|257052411|ref|YP_003130244.1|	-	4.6e-20	72.0	0.0	5.4e-20	71.8	0.0	1.2	1	0	0	1	1	1	1	Aldo/keto	reductase	family
Methyltransf_11	PF08241.12	gi|257052412|ref|YP_003130245.1|	-	3.4e-13	50.1	0.0	6.2e-13	49.2	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|257052412|ref|YP_003130245.1|	-	4.1e-12	46.6	0.0	8.3e-12	45.7	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|257052412|ref|YP_003130245.1|	-	2e-07	30.9	0.0	2.6e-07	30.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_24	PF13578.6	gi|257052412|ref|YP_003130245.1|	-	0.0033	18.4	0.6	0.0076	17.3	0.2	1.8	2	1	0	2	2	2	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|257052412|ref|YP_003130245.1|	-	0.0045	17.7	0.0	0.0077	17.0	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
CMAS	PF02353.20	gi|257052412|ref|YP_003130245.1|	-	0.0071	15.7	0.0	0.01	15.2	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Ubie_methyltran	PF01209.18	gi|257052412|ref|YP_003130245.1|	-	0.034	13.5	0.0	0.051	12.9	0.0	1.2	1	0	0	1	1	1	0	ubiE/COQ5	methyltransferase	family
RrnaAD	PF00398.20	gi|257052412|ref|YP_003130245.1|	-	0.1	11.7	0.0	0.14	11.2	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
Methyltransf_8	PF05148.15	gi|257052412|ref|YP_003130245.1|	-	0.25	11.2	0.0	0.33	10.8	0.0	1.1	1	0	0	1	1	1	0	Hypothetical	methyltransferase
Polyketide_cyc2	PF10604.9	gi|257052413|ref|YP_003130246.1|	-	3.6e-07	30.5	0.5	4.2e-07	30.3	0.5	1.1	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
DUF3168	PF11367.8	gi|257052413|ref|YP_003130246.1|	-	0.022	14.9	0.8	0.038	14.2	0.3	1.7	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3168)
HTH_10	PF04967.12	gi|257052414|ref|YP_003130247.1|	-	1.4e-17	63.2	0.1	5.3e-17	61.4	0.1	2.0	2	0	0	2	2	2	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|257052414|ref|YP_003130247.1|	-	3.5e-05	23.7	2.4	4.6e-05	23.3	1.4	1.8	1	1	0	1	1	1	1	GAF	and	HTH_10	associated	domain
DNA_photolyase	PF00875.18	gi|257052414|ref|YP_003130247.1|	-	0.013	15.5	0.2	0.02	14.9	0.2	1.4	1	1	0	1	1	1	0	DNA	photolyase
HTH_35	PF13693.6	gi|257052414|ref|YP_003130247.1|	-	0.029	14.4	0.0	0.084	12.9	0.0	1.7	1	1	1	2	2	2	0	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.10	gi|257052414|ref|YP_003130247.1|	-	0.075	12.8	0.4	0.23	11.3	0.1	2.0	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
PuR_N	PF09182.10	gi|257052414|ref|YP_003130247.1|	-	0.11	12.5	0.0	0.2	11.6	0.0	1.4	1	0	0	1	1	1	0	Bacterial	purine	repressor,	N-terminal
VAPB_antitox	PF02697.14	gi|257052415|ref|YP_003130248.1|	-	6e-18	65.4	2.1	7.5e-18	65.1	2.1	1.1	1	0	0	1	1	1	1	Putative	antitoxin
PIN	PF01850.21	gi|257052416|ref|YP_003130249.1|	-	3.8e-11	43.6	0.0	4.3e-11	43.4	0.0	1.0	1	0	0	1	1	1	1	PIN	domain
PIN_3	PF13470.6	gi|257052416|ref|YP_003130249.1|	-	0.019	15.7	0.1	0.024	15.4	0.1	1.3	1	1	0	1	1	1	0	PIN	domain
Inositol_P	PF00459.25	gi|257052417|ref|YP_003130250.1|	-	3.6e-43	148.1	0.5	4.2e-43	147.8	0.5	1.0	1	0	0	1	1	1	1	Inositol	monophosphatase	family
FBPase	PF00316.20	gi|257052417|ref|YP_003130250.1|	-	0.043	13.3	0.0	0.083	12.4	0.0	1.4	1	0	0	1	1	1	0	Fructose-1-6-bisphosphatase,	N-terminal	domain
ABC2_membrane	PF01061.24	gi|257052418|ref|YP_003130251.1|	-	3.5e-25	88.7	8.4	4.5e-25	88.3	8.4	1.2	1	0	0	1	1	1	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.7	gi|257052418|ref|YP_003130251.1|	-	2.4e-12	46.6	14.5	3.7e-12	46.0	14.5	1.2	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC_tran	PF00005.27	gi|257052419|ref|YP_003130252.1|	-	5.1e-31	108.0	0.0	7.8e-31	107.4	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|257052419|ref|YP_003130252.1|	-	6.9e-15	55.6	0.0	5.1e-10	39.7	0.0	2.1	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
DUF4162	PF13732.6	gi|257052419|ref|YP_003130252.1|	-	3.4e-10	40.5	0.0	7.2e-10	39.4	0.0	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4162)
AAA_15	PF13175.6	gi|257052419|ref|YP_003130252.1|	-	0.0027	17.5	0.0	1.6	8.4	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
SRP54	PF00448.22	gi|257052419|ref|YP_003130252.1|	-	0.0029	17.3	0.0	0.0059	16.2	0.0	1.5	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
AAA	PF00004.29	gi|257052419|ref|YP_003130252.1|	-	0.0041	17.5	0.0	0.013	15.9	0.0	1.9	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_29	PF13555.6	gi|257052419|ref|YP_003130252.1|	-	0.005	16.6	0.1	0.012	15.4	0.1	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|257052419|ref|YP_003130252.1|	-	0.017	15.6	0.0	0.028	14.9	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
SbcCD_C	PF13558.6	gi|257052419|ref|YP_003130252.1|	-	0.041	14.1	0.0	0.1	12.8	0.0	1.8	1	0	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_16	PF13191.6	gi|257052419|ref|YP_003130252.1|	-	0.041	14.3	0.1	0.15	12.4	0.0	2.0	1	1	1	2	2	2	0	AAA	ATPase	domain
Glyco_hydro_cc	PF11790.8	gi|257052420|ref|YP_003130253.1|	-	2.7e-07	30.4	0.0	4.2e-07	29.8	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	hydrolase	catalytic	core
Glyco_hydro_42	PF02449.15	gi|257052420|ref|YP_003130253.1|	-	0.0023	17.4	0.1	0.01	15.2	0.0	2.0	3	0	0	3	3	3	1	Beta-galactosidase
PGF-CTERM	PF18204.1	gi|257052420|ref|YP_003130253.1|	-	0.0027	17.6	0.1	0.0027	17.6	0.1	2.3	2	0	0	2	2	2	1	PGF-CTERM	motif
HTH_10	PF04967.12	gi|257052421|ref|YP_003130254.1|	-	2.5e-15	56.0	0.1	4.1e-15	55.3	0.1	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Sigma70_r4_2	PF08281.12	gi|257052421|ref|YP_003130254.1|	-	0.001	18.7	0.1	0.016	14.9	0.1	2.2	1	1	0	1	1	1	1	Sigma-70,	region	4
MarR_2	PF12802.7	gi|257052421|ref|YP_003130254.1|	-	0.0034	17.2	0.1	0.28	11.1	0.0	3.3	3	0	0	3	3	3	1	MarR	family
Sigma70_r4	PF04545.16	gi|257052421|ref|YP_003130254.1|	-	0.039	13.5	0.0	0.067	12.7	0.0	1.4	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_23	PF13384.6	gi|257052421|ref|YP_003130254.1|	-	0.039	13.8	0.0	0.078	12.8	0.0	1.5	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_20	PF12840.7	gi|257052421|ref|YP_003130254.1|	-	0.084	12.9	0.1	0.26	11.4	0.0	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain
SSI	PF00720.17	gi|257052421|ref|YP_003130254.1|	-	0.16	11.9	0.1	0.33	11.0	0.1	1.5	1	0	0	1	1	1	0	Subtilisin	inhibitor-like
MFS_1	PF07690.16	gi|257052422|ref|YP_003130255.1|	-	6.4e-28	97.7	48.3	6.4e-19	68.1	19.2	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
PTR2	PF00854.21	gi|257052422|ref|YP_003130255.1|	-	1.4	7.6	8.6	0.24	10.2	0.2	2.5	3	0	0	3	3	3	0	POT	family
Regulator_TrmB	PF11495.8	gi|257052423|ref|YP_003130256.1|	-	2.1e-39	135.1	0.0	2.7e-39	134.8	0.0	1.1	1	0	0	1	1	1	1	Archaeal	transcriptional	regulator	TrmB
TrmB	PF01978.19	gi|257052423|ref|YP_003130256.1|	-	6.5e-15	54.8	0.0	1.6e-14	53.5	0.0	1.7	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|257052423|ref|YP_003130256.1|	-	0.016	15.0	0.0	0.035	13.9	0.0	1.6	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
PadR	PF03551.14	gi|257052423|ref|YP_003130256.1|	-	0.024	14.6	0.0	0.056	13.4	0.0	1.6	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
YolD	PF08863.10	gi|257052423|ref|YP_003130256.1|	-	0.069	13.2	0.0	0.21	11.7	0.0	1.8	1	0	0	1	1	1	0	YolD-like	protein
HTH_20	PF12840.7	gi|257052423|ref|YP_003130256.1|	-	0.1	12.6	0.0	0.32	11.1	0.0	1.9	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF2187	PF09953.9	gi|257052423|ref|YP_003130256.1|	-	0.15	12.1	0.1	1.1	9.4	0.0	2.4	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2187)
HTH_23	PF13384.6	gi|257052423|ref|YP_003130256.1|	-	0.15	11.9	0.0	0.43	10.4	0.0	1.7	1	0	0	1	1	1	0	Homeodomain-like	domain
DUF2250	PF10007.9	gi|257052423|ref|YP_003130256.1|	-	0.18	11.9	0.0	0.57	10.3	0.0	1.8	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
2-Hacid_dh_C	PF02826.19	gi|257052425|ref|YP_003130258.1|	-	7.6e-50	168.7	0.0	1.3e-49	168.0	0.0	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.30	gi|257052425|ref|YP_003130258.1|	-	3.1e-33	114.3	0.4	1.3e-32	112.2	0.2	2.1	3	0	0	3	3	3	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
ACT	PF01842.25	gi|257052425|ref|YP_003130258.1|	-	6.9e-08	32.1	0.2	3.7e-07	29.8	0.0	2.4	2	0	0	2	2	2	1	ACT	domain
Peptidase_M48	PF01435.18	gi|257052426|ref|YP_003130259.1|	-	2.3e-37	128.7	0.0	5.3e-37	127.5	0.0	1.6	1	0	0	1	1	1	1	Peptidase	family	M48
Peptidase_M48_N	PF16491.5	gi|257052426|ref|YP_003130259.1|	-	7.6e-32	110.7	4.7	7.6e-32	110.7	4.7	2.1	3	0	0	3	3	3	1	CAAX	prenyl	protease	N-terminal,	five	membrane	helices
DUF2268	PF10026.9	gi|257052426|ref|YP_003130259.1|	-	0.023	14.2	0.0	0.33	10.5	0.0	2.0	2	0	0	2	2	2	0	Predicted	Zn-dependent	protease	(DUF2268)
DUF3113	PF11310.8	gi|257052426|ref|YP_003130259.1|	-	0.12	12.3	0.0	0.25	11.3	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3113)
Peptidase_M56	PF05569.11	gi|257052426|ref|YP_003130259.1|	-	1.6	7.9	4.7	3	7.0	0.0	2.9	3	1	0	3	3	3	0	BlaR1	peptidase	M56
DnaJ	PF00226.31	gi|257052427|ref|YP_003130260.1|	-	1.5e-10	41.1	0.0	2.7e-10	40.2	0.0	1.4	1	0	0	1	1	1	1	DnaJ	domain
Mntp	PF02659.15	gi|257052427|ref|YP_003130260.1|	-	0.01	15.6	0.6	0.014	15.1	0.6	1.1	1	0	0	1	1	1	0	Putative	manganese	efflux	pump
UBA	PF00627.31	gi|257052427|ref|YP_003130260.1|	-	0.063	13.2	0.0	0.14	12.1	0.0	1.6	1	0	0	1	1	1	0	UBA/TS-N	domain
Phage_holin_3_6	PF07332.11	gi|257052427|ref|YP_003130260.1|	-	3	7.9	8.1	4.9	7.2	8.1	1.2	1	0	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
NAD_synthase	PF02540.17	gi|257052428|ref|YP_003130261.1|	-	4e-80	268.4	0.0	5.1e-80	268.1	0.0	1.0	1	0	0	1	1	1	1	NAD	synthase
tRNA_Me_trans	PF03054.16	gi|257052428|ref|YP_003130261.1|	-	1.5e-07	30.6	0.0	2.3e-05	23.4	0.0	2.1	2	0	0	2	2	2	2	tRNA	methyl	transferase
Asn_synthase	PF00733.21	gi|257052428|ref|YP_003130261.1|	-	0.00013	21.7	0.1	0.00048	19.9	0.1	1.8	2	0	0	2	2	2	1	Asparagine	synthase
LPD22	PF18834.1	gi|257052428|ref|YP_003130261.1|	-	0.0017	18.5	0.2	29	5.0	0.0	3.3	3	0	0	3	3	3	0	Large	polyvalent	protein	associated	domain	22
HTH_28	PF13518.6	gi|257052428|ref|YP_003130261.1|	-	0.0023	18.0	0.0	0.019	15.1	0.0	2.3	2	0	0	2	2	2	1	Helix-turn-helix	domain
QueC	PF06508.13	gi|257052428|ref|YP_003130261.1|	-	0.0027	17.2	0.0	0.019	14.4	0.0	2.0	2	0	0	2	2	2	1	Queuosine	biosynthesis	protein	QueC
HTH_29	PF13551.6	gi|257052428|ref|YP_003130261.1|	-	0.0075	16.3	0.0	0.031	14.3	0.0	2.1	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|257052428|ref|YP_003130261.1|	-	0.13	12.1	0.2	3.8	7.4	0.0	3.0	3	0	0	3	3	3	0	Homeodomain-like	domain
Cyclase	PF04199.13	gi|257052430|ref|YP_003130263.1|	-	4.8e-22	78.7	0.6	7.6e-22	78.0	0.6	1.3	1	0	0	1	1	1	1	Putative	cyclase
HTH_AsnC-type	PF13404.6	gi|257052431|ref|YP_003130264.1|	-	3.8e-14	52.2	1.5	7e-14	51.4	1.5	1.5	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.6	gi|257052431|ref|YP_003130264.1|	-	1.6e-13	50.0	0.0	2.2e-13	49.5	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
AsnC_trans_reg	PF01037.21	gi|257052431|ref|YP_003130264.1|	-	2.9e-07	30.4	1.3	4.6e-07	29.7	0.5	1.8	2	0	0	2	2	2	1	Lrp/AsnC	ligand	binding	domain
HTH_20	PF12840.7	gi|257052431|ref|YP_003130264.1|	-	2.1e-05	24.5	0.1	4.5e-05	23.4	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_Tnp_ISL3	PF13542.6	gi|257052431|ref|YP_003130264.1|	-	4e-05	22.9	0.3	0.021	14.2	0.1	2.6	2	0	0	2	2	2	2	Helix-turn-helix	domain	of	transposase	family	ISL3
MarR_2	PF12802.7	gi|257052431|ref|YP_003130264.1|	-	7e-05	22.6	0.3	0.00014	21.7	0.3	1.4	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.12	gi|257052431|ref|YP_003130264.1|	-	0.0013	18.7	0.0	0.0025	17.7	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
TrmB	PF01978.19	gi|257052431|ref|YP_003130264.1|	-	0.0033	17.3	0.0	0.0057	16.5	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.20	gi|257052431|ref|YP_003130264.1|	-	0.0053	16.6	0.0	0.0087	15.9	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_Crp_2	PF13545.6	gi|257052431|ref|YP_003130264.1|	-	0.01	15.8	0.0	0.018	15.0	0.0	1.4	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
MarR	PF01047.22	gi|257052431|ref|YP_003130264.1|	-	0.012	15.6	0.0	0.022	14.7	0.0	1.5	1	0	0	1	1	1	0	MarR	family
Rrf2	PF02082.20	gi|257052431|ref|YP_003130264.1|	-	0.017	15.5	0.0	0.031	14.6	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_DeoR	PF08220.12	gi|257052431|ref|YP_003130264.1|	-	0.019	14.7	0.0	0.034	13.9	0.0	1.4	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
HTH_28	PF13518.6	gi|257052431|ref|YP_003130264.1|	-	0.037	14.2	0.2	0.06	13.5	0.2	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_23	PF13384.6	gi|257052431|ref|YP_003130264.1|	-	0.038	13.8	0.0	0.063	13.1	0.0	1.3	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_50	PF18024.1	gi|257052431|ref|YP_003130264.1|	-	0.039	13.6	0.0	0.13	11.9	0.0	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain
FeoC	PF09012.10	gi|257052431|ref|YP_003130264.1|	-	0.14	12.2	0.0	0.22	11.6	0.0	1.2	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
P-II	PF00543.22	gi|257052432|ref|YP_003130265.1|	-	2.2e-34	118.1	0.3	2.6e-34	117.9	0.3	1.0	1	0	0	1	1	1	1	Nitrogen	regulatory	protein	P-II
Methyltrans_RNA	PF04452.14	gi|257052432|ref|YP_003130265.1|	-	0.025	13.9	0.0	0.036	13.4	0.0	1.3	1	1	0	1	1	1	0	RNA	methyltransferase
Ammonium_transp	PF00909.21	gi|257052433|ref|YP_003130266.1|	-	1.9e-92	310.0	34.6	2.5e-92	309.6	34.6	1.1	1	0	0	1	1	1	1	Ammonium	Transporter	Family
PsbY	PF06298.11	gi|257052433|ref|YP_003130266.1|	-	0.043	13.7	0.3	0.043	13.7	0.3	3.2	3	0	0	3	3	3	0	Photosystem	II	protein	Y	(PsbY)
HTH_AsnC-type	PF13404.6	gi|257052434|ref|YP_003130267.1|	-	7.3e-13	48.1	3.8	7.3e-13	48.1	3.8	1.9	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.6	gi|257052434|ref|YP_003130267.1|	-	7e-12	44.7	0.0	1.1e-11	44.1	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
AsnC_trans_reg	PF01037.21	gi|257052434|ref|YP_003130267.1|	-	1.2e-09	38.0	1.5	1.5e-09	37.7	0.3	1.7	2	0	0	2	2	2	1	Lrp/AsnC	ligand	binding	domain
HTH_20	PF12840.7	gi|257052434|ref|YP_003130267.1|	-	1.7e-05	24.8	2.9	1.9e-05	24.6	0.2	2.3	3	0	0	3	3	3	1	Helix-turn-helix	domain
HTH_DeoR	PF08220.12	gi|257052434|ref|YP_003130267.1|	-	9.2e-05	22.1	0.0	0.00015	21.4	0.0	1.3	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|257052434|ref|YP_003130267.1|	-	0.00013	21.9	0.0	0.00023	21.1	0.0	1.4	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_Tnp_ISL3	PF13542.6	gi|257052434|ref|YP_003130267.1|	-	0.00016	21.0	1.9	0.047	13.1	0.1	3.1	3	0	0	3	3	3	1	Helix-turn-helix	domain	of	transposase	family	ISL3
MarR_2	PF12802.7	gi|257052434|ref|YP_003130267.1|	-	0.00087	19.1	0.2	0.0019	18.0	0.2	1.6	1	0	0	1	1	1	1	MarR	family
HTH_23	PF13384.6	gi|257052434|ref|YP_003130267.1|	-	0.003	17.3	0.1	0.08	12.8	0.0	2.2	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_5	PF01022.20	gi|257052434|ref|YP_003130267.1|	-	0.0047	16.8	0.0	0.0082	16.0	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.22	gi|257052434|ref|YP_003130267.1|	-	0.0055	16.6	0.0	0.0091	15.9	0.0	1.4	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|257052434|ref|YP_003130267.1|	-	0.0072	16.2	0.0	0.014	15.2	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.12	gi|257052434|ref|YP_003130267.1|	-	0.016	15.2	0.0	0.027	14.4	0.0	1.3	1	0	0	1	1	1	0	HTH	domain
Rrf2	PF02082.20	gi|257052434|ref|YP_003130267.1|	-	0.031	14.6	0.0	0.066	13.6	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator
FeoC	PF09012.10	gi|257052434|ref|YP_003130267.1|	-	0.033	14.3	0.0	0.055	13.5	0.0	1.3	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
TPR_9	PF13371.6	gi|257052434|ref|YP_003130267.1|	-	0.043	14.0	1.3	0.043	14.0	1.3	1.6	2	0	0	2	2	2	0	Tetratricopeptide	repeat
Fe_dep_repress	PF01325.19	gi|257052434|ref|YP_003130267.1|	-	0.046	13.9	0.0	0.09	13.0	0.0	1.4	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_7	PF02796.15	gi|257052434|ref|YP_003130267.1|	-	0.089	12.9	0.0	0.43	10.7	0.0	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	resolvase
HTH_28	PF13518.6	gi|257052434|ref|YP_003130267.1|	-	0.096	12.8	0.6	0.33	11.1	0.1	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_47	PF16221.5	gi|257052434|ref|YP_003130267.1|	-	0.1	12.2	0.2	0.2	11.2	0.2	1.5	1	0	0	1	1	1	0	winged	helix-turn-helix
HTH_9	PF08221.11	gi|257052434|ref|YP_003130267.1|	-	0.13	12.4	0.1	2.4	8.3	0.0	2.3	3	0	0	3	3	2	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
HTH_38	PF13936.6	gi|257052434|ref|YP_003130267.1|	-	0.22	11.3	0.0	3	7.7	0.0	2.1	2	0	0	2	2	2	0	Helix-turn-helix	domain
E3_UFM1_ligase	PF09743.9	gi|257052434|ref|YP_003130267.1|	-	0.23	11.0	0.0	0.3	10.7	0.0	1.2	1	0	0	1	1	1	0	E3	UFM1-protein	ligase	1
P-II	PF00543.22	gi|257052435|ref|YP_003130268.1|	-	5.2e-34	116.9	0.4	6e-34	116.7	0.4	1.0	1	0	0	1	1	1	1	Nitrogen	regulatory	protein	P-II
Methyltrans_RNA	PF04452.14	gi|257052435|ref|YP_003130268.1|	-	0.03	13.6	0.0	0.035	13.5	0.0	1.2	1	0	0	1	1	1	0	RNA	methyltransferase
Ammonium_transp	PF00909.21	gi|257052436|ref|YP_003130269.1|	-	3.3e-101	338.9	35.4	3.7e-101	338.7	35.4	1.0	1	0	0	1	1	1	1	Ammonium	Transporter	Family
P-II	PF00543.22	gi|257052437|ref|YP_003130270.1|	-	2.5e-34	117.9	0.1	2.9e-34	117.7	0.1	1.0	1	0	0	1	1	1	1	Nitrogen	regulatory	protein	P-II
FAD_binding_4	PF01565.23	gi|257052437|ref|YP_003130270.1|	-	8.9e-05	22.3	0.2	0.04	13.6	0.0	2.1	1	1	1	2	2	2	2	FAD	binding	domain
ALAD	PF00490.21	gi|257052438|ref|YP_003130271.1|	-	5.3e-143	475.9	0.2	6e-143	475.7	0.2	1.0	1	0	0	1	1	1	1	Delta-aminolevulinic	acid	dehydratase
PEP_mutase	PF13714.6	gi|257052438|ref|YP_003130271.1|	-	0.02	14.4	3.6	2.4	7.5	0.4	3.4	3	1	0	3	3	3	0	Phosphoenolpyruvate	phosphomutase
Glyco_hydro_36	PF17167.4	gi|257052439|ref|YP_003130272.1|	-	1.5e-153	511.5	0.1	1.8e-153	511.2	0.1	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolase	36	superfamily,	catalytic	domain
Glyco_transf_36	PF06165.11	gi|257052439|ref|YP_003130272.1|	-	1.5e-85	286.6	0.0	3e-85	285.6	0.0	1.5	1	0	0	1	1	1	1	Glycosyltransferase	family	36
Glyco_hydro_65C	PF03633.15	gi|257052439|ref|YP_003130272.1|	-	0.051	13.5	0.0	0.16	11.9	0.0	1.9	1	0	0	1	1	1	0	Glycosyl	hydrolase	family	65,	C-terminal	domain
Glyco_hydro_36	PF17167.4	gi|257052440|ref|YP_003130273.1|	-	1e-129	432.9	0.1	1.3e-129	432.6	0.1	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolase	36	superfamily,	catalytic	domain
Glyco_transf_36	PF06165.11	gi|257052440|ref|YP_003130273.1|	-	1.2e-80	270.5	0.0	1.8e-80	270.0	0.0	1.3	1	0	0	1	1	1	1	Glycosyltransferase	family	36
Bac_rhamnosid6H	PF17389.2	gi|257052440|ref|YP_003130273.1|	-	0.044	13.0	1.1	0.066	12.4	0.1	1.7	2	0	0	2	2	2	0	Bacterial	alpha-L-rhamnosidase	6	hairpin	glycosidase	domain
TPR_7	PF13176.6	gi|257052440|ref|YP_003130273.1|	-	0.62	10.2	2.2	33	4.8	0.2	3.3	3	0	0	3	3	3	0	Tetratricopeptide	repeat
TFIIA	PF03153.13	gi|257052441|ref|YP_003130274.1|	-	8.7	6.2	13.3	15	5.5	13.3	1.3	1	0	0	1	1	1	0	Transcription	factor	IIA,	alpha/beta	subunit
bPH_2	PF03703.14	gi|257052442|ref|YP_003130275.1|	-	1.7e-10	40.9	0.3	2.6e-10	40.4	0.3	1.3	1	0	0	1	1	1	1	Bacterial	PH	domain
Cation_efflux	PF01545.21	gi|257052442|ref|YP_003130275.1|	-	0.012	15.3	0.0	0.016	14.9	0.0	1.2	1	0	0	1	1	1	0	Cation	efflux	family
PIN	PF01850.21	gi|257052443|ref|YP_003130276.1|	-	8.8e-07	29.5	0.0	1.2e-06	29.0	0.0	1.2	1	0	0	1	1	1	1	PIN	domain
VAPB_antitox	PF02697.14	gi|257052444|ref|YP_003130277.1|	-	6.6e-12	46.0	3.9	7.5e-12	45.8	3.9	1.1	1	0	0	1	1	1	1	Putative	antitoxin
DUF4349	PF14257.6	gi|257052444|ref|YP_003130277.1|	-	0.027	13.9	2.7	0.03	13.7	2.7	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4349)
RHH_1	PF01402.21	gi|257052444|ref|YP_003130277.1|	-	0.069	13.1	5.8	0.096	12.7	0.9	2.6	1	1	1	2	2	2	0	Ribbon-helix-helix	protein,	copG	family
DUF973	PF06157.11	gi|257052445|ref|YP_003130278.1|	-	0.094	11.8	1.0	0.12	11.4	0.2	1.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF973)
DUF4149	PF13664.6	gi|257052445|ref|YP_003130278.1|	-	0.89	9.9	6.8	2.5	8.5	4.8	2.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4149)
Glyco_hydro_3	PF00933.21	gi|257052446|ref|YP_003130279.1|	-	2.6e-75	253.8	0.0	3.3e-75	253.4	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	N	terminal	domain
Glyco_hydro_3_C	PF01915.22	gi|257052446|ref|YP_003130279.1|	-	7.5e-45	153.4	0.0	1.2e-44	152.7	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	C-terminal	domain
Fn3-like	PF14310.6	gi|257052446|ref|YP_003130279.1|	-	3e-13	49.7	0.1	6.6e-13	48.6	0.1	1.5	1	0	0	1	1	1	1	Fibronectin	type	III-like	domain
Aldedh	PF00171.22	gi|257052447|ref|YP_003130280.1|	-	1.8e-27	96.0	2.6	1.3e-22	80.0	0.9	2.2	2	0	0	2	2	2	2	Aldehyde	dehydrogenase	family
AAA_assoc_2	PF16193.5	gi|257052447|ref|YP_003130280.1|	-	0.031	14.6	2.0	0.11	12.9	2.0	2.0	1	0	0	1	1	1	0	AAA	C-terminal	domain
LTXXQ	PF07813.12	gi|257052447|ref|YP_003130280.1|	-	0.062	14.0	0.2	0.19	12.5	0.3	1.8	2	0	0	2	2	2	0	LTXXQ	motif	family	protein
AA_kinase	PF00696.28	gi|257052448|ref|YP_003130281.1|	-	2.4e-38	132.1	3.1	2.9e-38	131.8	3.1	1.1	1	0	0	1	1	1	1	Amino	acid	kinase	family
P5CR_dimer	PF14748.6	gi|257052449|ref|YP_003130282.1|	-	1.2e-31	109.0	1.9	1.2e-31	109.0	1.9	1.7	2	0	0	2	2	2	1	Pyrroline-5-carboxylate	reductase	dimerisation
F420_oxidored	PF03807.17	gi|257052449|ref|YP_003130282.1|	-	6.9e-13	49.0	0.3	2e-12	47.5	0.3	1.8	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_2	PF03446.15	gi|257052449|ref|YP_003130282.1|	-	4.9e-06	26.8	0.7	1.1e-05	25.7	0.2	1.9	2	1	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
TrkA_N	PF02254.18	gi|257052449|ref|YP_003130282.1|	-	6.3e-05	23.2	1.0	0.00019	21.7	0.7	2.0	2	0	0	2	2	2	1	TrkA-N	domain
3HCDH_N	PF02737.18	gi|257052449|ref|YP_003130282.1|	-	0.00051	20.0	0.2	0.0016	18.3	0.2	1.9	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
UDPG_MGDP_dh_N	PF03721.14	gi|257052449|ref|YP_003130282.1|	-	0.0006	19.4	0.1	0.0016	18.1	0.1	1.7	1	1	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
PDH	PF02153.17	gi|257052449|ref|YP_003130282.1|	-	0.001	18.1	0.2	0.1	11.6	0.2	2.1	2	0	0	2	2	2	2	Prephenate	dehydrogenase
Rossmann-like	PF10727.9	gi|257052449|ref|YP_003130282.1|	-	0.0037	17.1	6.2	0.0096	15.8	6.2	1.7	1	0	0	1	1	1	1	Rossmann-like	domain
NAD_Gly3P_dh_N	PF01210.23	gi|257052449|ref|YP_003130282.1|	-	0.0083	16.1	0.3	3.7	7.5	0.0	2.5	2	0	0	2	2	2	2	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
XdhC_C	PF13478.6	gi|257052449|ref|YP_003130282.1|	-	0.014	15.9	1.0	0.097	13.2	0.7	2.4	1	1	0	1	1	1	0	XdhC	Rossmann	domain
TetR_C_6	PF13977.6	gi|257052450|ref|YP_003130283.1|	-	2.5e-12	47.0	3.0	4.5e-12	46.2	3.0	1.4	1	0	0	1	1	1	1	BetI-type	transcriptional	repressor,	C-terminal
TetR_N	PF00440.23	gi|257052450|ref|YP_003130283.1|	-	1.2e-09	37.8	0.0	2e-09	37.1	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
TetR_C_31	PF17940.1	gi|257052450|ref|YP_003130283.1|	-	9.9e-08	32.2	8.1	1e-07	32.1	4.8	2.3	1	1	2	3	3	3	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_27	PF17935.1	gi|257052450|ref|YP_003130283.1|	-	5.1e-06	26.5	0.4	1.6e-05	24.9	0.3	2.0	1	1	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_24	PF17932.1	gi|257052450|ref|YP_003130283.1|	-	5.6e-05	23.4	0.7	0.00011	22.5	0.1	1.8	2	0	0	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_29	PF17938.1	gi|257052450|ref|YP_003130283.1|	-	0.00018	21.6	0.1	0.00053	20.1	0.1	1.7	1	1	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_17	PF17922.1	gi|257052450|ref|YP_003130283.1|	-	0.00073	19.6	0.0	0.0014	18.7	0.0	1.6	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_5	PF08360.11	gi|257052450|ref|YP_003130283.1|	-	0.029	14.5	0.0	0.045	13.9	0.0	1.3	1	0	0	1	1	1	0	QacR-like	protein,	C-terminal	region
UPF0122	PF04297.14	gi|257052450|ref|YP_003130283.1|	-	0.056	13.7	0.1	0.11	12.7	0.1	1.4	1	0	0	1	1	1	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
ABC_membrane	PF00664.23	gi|257052451|ref|YP_003130284.1|	-	6e-44	150.7	0.2	8e-44	150.3	0.2	1.1	1	0	0	1	1	1	1	ABC	transporter	transmembrane	region
ABC_tran	PF00005.27	gi|257052451|ref|YP_003130284.1|	-	1e-37	129.7	0.0	1.8e-37	128.9	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_22	PF13401.6	gi|257052451|ref|YP_003130284.1|	-	0.00057	20.2	0.2	0.0044	17.3	0.2	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|257052451|ref|YP_003130284.1|	-	0.0012	18.6	0.2	0.0047	16.7	0.0	2.0	1	1	1	2	2	2	1	AAA	domain
AAA_21	PF13304.6	gi|257052451|ref|YP_003130284.1|	-	0.0025	17.7	0.0	0.0075	16.1	0.0	1.8	2	0	0	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|257052451|ref|YP_003130284.1|	-	0.0025	17.3	0.0	0.032	13.7	0.0	1.9	1	1	1	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA	PF00004.29	gi|257052451|ref|YP_003130284.1|	-	0.0038	17.7	0.0	0.028	14.8	0.0	2.3	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Zeta_toxin	PF06414.12	gi|257052451|ref|YP_003130284.1|	-	0.02	14.2	0.0	0.04	13.2	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
RsgA_GTPase	PF03193.16	gi|257052451|ref|YP_003130284.1|	-	0.021	14.7	0.0	0.044	13.7	0.0	1.4	1	0	0	1	1	1	0	RsgA	GTPase
AAA_33	PF13671.6	gi|257052451|ref|YP_003130284.1|	-	0.025	14.7	0.1	0.61	10.2	0.0	2.6	3	0	0	3	3	3	0	AAA	domain
AAA_18	PF13238.6	gi|257052451|ref|YP_003130284.1|	-	0.033	14.7	0.1	0.1	13.1	0.0	1.9	2	0	0	2	2	1	0	AAA	domain
AAA_24	PF13479.6	gi|257052451|ref|YP_003130284.1|	-	0.036	13.8	0.0	0.073	12.8	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
DEAD	PF00270.29	gi|257052451|ref|YP_003130284.1|	-	0.037	13.8	0.1	0.14	11.9	0.1	1.8	1	1	0	1	1	1	0	DEAD/DEAH	box	helicase
TsaE	PF02367.17	gi|257052451|ref|YP_003130284.1|	-	0.047	13.7	0.0	0.11	12.5	0.0	1.6	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
cobW	PF02492.19	gi|257052451|ref|YP_003130284.1|	-	0.066	12.8	0.0	0.12	12.0	0.0	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_23	PF13476.6	gi|257052451|ref|YP_003130284.1|	-	0.067	13.7	0.0	0.14	12.6	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|257052451|ref|YP_003130284.1|	-	0.073	13.4	0.3	0.19	12.1	0.3	1.8	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_29	PF13555.6	gi|257052451|ref|YP_003130284.1|	-	0.11	12.3	0.0	0.28	11.0	0.0	1.7	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
MobB	PF03205.14	gi|257052451|ref|YP_003130284.1|	-	0.18	11.7	0.0	0.52	10.2	0.0	1.8	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_14	PF13173.6	gi|257052451|ref|YP_003130284.1|	-	0.18	11.8	0.0	0.58	10.2	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
SpdB	PF05122.13	gi|257052453|ref|YP_003130286.1|	-	0.079	13.1	0.0	0.096	12.8	0.0	1.1	1	0	0	1	1	1	0	Mobile	element	transfer	protein
Exo_endo_phos	PF03372.23	gi|257052454|ref|YP_003130287.1|	-	9.2e-14	51.5	1.4	1.7e-13	50.6	1.4	1.5	1	1	0	1	1	1	1	Endonuclease/Exonuclease/phosphatase	family
Exo_endo_phos_2	PF14529.6	gi|257052454|ref|YP_003130287.1|	-	0.0079	16.0	0.1	0.09	12.6	0.1	2.2	1	1	0	1	1	1	1	Endonuclease-reverse	transcriptase
DUF87	PF01935.17	gi|257052455|ref|YP_003130288.1|	-	1.6e-08	35.0	0.0	2.9e-08	34.1	0.0	1.4	1	0	0	1	1	1	1	Helicase	HerA,	central	domain
DUF853	PF05872.12	gi|257052455|ref|YP_003130288.1|	-	6e-06	25.1	0.1	0.006	15.2	0.0	2.2	2	0	0	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF853)
AAA_16	PF13191.6	gi|257052455|ref|YP_003130288.1|	-	0.00019	21.9	0.0	0.00089	19.7	0.0	2.1	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|257052455|ref|YP_003130288.1|	-	0.0028	17.9	0.0	0.013	15.8	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
ResIII	PF04851.15	gi|257052455|ref|YP_003130288.1|	-	0.01	15.9	0.0	4.6	7.2	0.0	2.3	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
TrwB_AAD_bind	PF10412.9	gi|257052455|ref|YP_003130288.1|	-	0.018	13.9	0.0	0.029	13.3	0.0	1.2	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
T2SSE	PF00437.20	gi|257052455|ref|YP_003130288.1|	-	0.025	13.6	0.0	0.044	12.8	0.0	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
AAA	PF00004.29	gi|257052455|ref|YP_003130288.1|	-	0.031	14.7	0.1	5.3	7.5	0.0	2.4	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Zeta_toxin	PF06414.12	gi|257052455|ref|YP_003130288.1|	-	0.053	12.8	0.0	0.11	11.8	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
AAA_10	PF12846.7	gi|257052455|ref|YP_003130288.1|	-	0.055	12.4	0.0	1.5	7.7	0.0	2.1	2	0	0	2	2	2	0	AAA-like	domain
DEAD	PF00270.29	gi|257052455|ref|YP_003130288.1|	-	0.067	13.0	0.1	1.8	8.3	0.0	2.2	1	1	0	2	2	2	0	DEAD/DEAH	box	helicase
AAA_7	PF12775.7	gi|257052455|ref|YP_003130288.1|	-	0.082	12.4	0.0	0.22	11.0	0.0	1.6	2	0	0	2	2	2	0	P-loop	containing	dynein	motor	region
FtsK_SpoIIIE	PF01580.18	gi|257052455|ref|YP_003130288.1|	-	0.094	12.1	0.0	0.36	10.2	0.0	1.9	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
HAS-barrel	PF09378.10	gi|257052455|ref|YP_003130288.1|	-	0.12	12.6	0.0	0.39	10.9	0.0	1.8	2	0	0	2	2	1	0	HAS	barrel	domain
Ribosomal_L30_N	PF08079.12	gi|257052455|ref|YP_003130288.1|	-	0.16	12.2	0.2	0.35	11.1	0.2	1.5	1	0	0	1	1	1	0	Ribosomal	L30	N-terminal	domain
TAT_signal	PF10518.9	gi|257052456|ref|YP_003130289.1|	-	0.00048	19.9	2.9	0.0015	18.3	2.9	2.0	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
HTH_AsnC-type	PF13404.6	gi|257052456|ref|YP_003130289.1|	-	0.16	11.8	0.1	0.62	10.0	0.0	2.0	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
TAT_signal	PF10518.9	gi|257052457|ref|YP_003130290.1|	-	0.00044	20.0	4.4	0.00044	20.0	4.4	2.1	2	0	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Mut7-C	PF01927.16	gi|257052458|ref|YP_003130291.1|	-	0.12	12.5	2.3	0.76	9.9	0.9	2.2	2	0	0	2	2	2	0	Mut7-C	RNAse	domain
DZR	PF12773.7	gi|257052458|ref|YP_003130291.1|	-	3.6	7.7	8.9	67	3.6	6.2	2.7	2	1	0	2	2	2	0	Double	zinc	ribbon
zinc-ribbons_6	PF07191.12	gi|257052458|ref|YP_003130291.1|	-	4.3	7.4	8.8	1.9	8.5	6.0	1.8	2	0	0	2	2	2	0	zinc-ribbons
Usp	PF00582.26	gi|257052459|ref|YP_003130292.1|	-	9.6e-35	120.1	0.0	1.1e-34	120.0	0.0	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
PGM_PMM_I	PF02878.16	gi|257052460|ref|YP_003130293.1|	-	2.2e-30	105.2	0.2	6.5e-30	103.6	0.1	1.9	2	0	0	2	2	2	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
PGM_PMM_II	PF02879.16	gi|257052460|ref|YP_003130293.1|	-	3.3e-24	85.5	0.4	2.7e-23	82.5	0.2	2.7	3	0	0	3	3	3	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
PGM_PMM_IV	PF00408.20	gi|257052460|ref|YP_003130293.1|	-	1.5e-13	50.7	0.0	5e-13	49.0	0.0	1.9	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	C-terminal	domain
PGM_PMM_III	PF02880.16	gi|257052460|ref|YP_003130293.1|	-	0.00061	20.0	0.0	0.0015	18.7	0.0	1.7	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	III
PNP_UDP_1	PF01048.20	gi|257052461|ref|YP_003130294.1|	-	5.1e-45	153.6	0.8	6.4e-45	153.2	0.8	1.1	1	0	0	1	1	1	1	Phosphorylase	superfamily
dCMP_cyt_deam_1	PF00383.23	gi|257052462|ref|YP_003130295.1|	-	1.6e-14	53.6	0.0	1.8e-14	53.4	0.0	1.1	1	0	0	1	1	1	1	Cytidine	and	deoxycytidylate	deaminase	zinc-binding	region
dCMP_cyt_deam_2	PF08211.12	gi|257052462|ref|YP_003130295.1|	-	2.3e-12	47.2	0.7	4.6e-12	46.3	0.2	1.7	2	0	0	2	2	2	1	Cytidine	and	deoxycytidylate	deaminase	zinc-binding	region
LmjF365940-deam	PF14421.6	gi|257052462|ref|YP_003130295.1|	-	0.0025	17.5	0.4	0.58	9.7	0.0	2.0	1	1	1	2	2	2	2	A	distinct	subfamily	of	CDD/CDA-like	deaminases
DUF1427	PF07235.11	gi|257052463|ref|YP_003130296.1|	-	6.6e-06	26.0	4.1	7.6e-06	25.8	4.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1427)
SpoVAB	PF13782.6	gi|257052463|ref|YP_003130296.1|	-	0.02	15.2	1.0	0.025	14.9	1.0	1.1	1	0	0	1	1	1	0	Stage	V	sporulation	protein	AB
DeoC	PF01791.9	gi|257052464|ref|YP_003130297.1|	-	9.2e-13	48.3	1.0	1.3e-12	47.9	1.0	1.2	1	0	0	1	1	1	1	DeoC/LacD	family	aldolase
DHO_dh	PF01180.21	gi|257052464|ref|YP_003130297.1|	-	0.64	9.2	2.0	10	5.2	0.3	2.1	1	1	0	2	2	2	0	Dihydroorotate	dehydrogenase
ATPase	PF06745.13	gi|257052465|ref|YP_003130298.1|	-	7.4e-56	189.1	0.0	9.2e-56	188.8	0.0	1.1	1	0	0	1	1	1	1	KaiC
DnaB_C	PF03796.15	gi|257052465|ref|YP_003130298.1|	-	6.2e-09	35.6	0.0	2.5e-05	23.8	0.0	2.3	2	0	0	2	2	2	2	DnaB-like	helicase	C	terminal	domain
AAA_24	PF13479.6	gi|257052465|ref|YP_003130298.1|	-	1.8e-06	27.8	0.0	4.1e-06	26.7	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_25	PF13481.6	gi|257052465|ref|YP_003130298.1|	-	2.8e-06	27.1	0.0	4.6e-06	26.3	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
GvpD	PF07088.11	gi|257052465|ref|YP_003130298.1|	-	7.5e-05	21.5	0.2	0.00038	19.2	0.2	1.9	1	1	0	1	1	1	1	GvpD	gas	vesicle	protein
AAA_16	PF13191.6	gi|257052465|ref|YP_003130298.1|	-	0.00088	19.7	0.1	0.016	15.6	0.1	2.4	1	1	0	1	1	1	1	AAA	ATPase	domain
RecA	PF00154.21	gi|257052465|ref|YP_003130298.1|	-	0.0013	18.2	0.0	0.0027	17.2	0.0	1.5	2	0	0	2	2	2	1	recA	bacterial	DNA	recombination	protein
Rad51	PF08423.11	gi|257052465|ref|YP_003130298.1|	-	0.0019	17.5	0.0	0.0025	17.1	0.0	1.2	1	0	0	1	1	1	1	Rad51
MEDS	PF14417.6	gi|257052465|ref|YP_003130298.1|	-	0.0029	17.5	0.0	0.0053	16.6	0.0	1.4	1	0	0	1	1	1	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
AAA_14	PF13173.6	gi|257052465|ref|YP_003130298.1|	-	0.0045	17.0	0.0	0.011	15.8	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
T2SSE	PF00437.20	gi|257052465|ref|YP_003130298.1|	-	0.0068	15.5	0.0	0.01	14.9	0.0	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_22	PF13401.6	gi|257052465|ref|YP_003130298.1|	-	0.014	15.7	0.0	0.029	14.7	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
IstB_IS21	PF01695.17	gi|257052465|ref|YP_003130298.1|	-	0.018	14.7	0.0	0.031	14.0	0.0	1.4	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
DUF2075	PF09848.9	gi|257052465|ref|YP_003130298.1|	-	0.019	14.2	0.0	0.028	13.7	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_19	PF13245.6	gi|257052465|ref|YP_003130298.1|	-	0.024	15.0	0.0	0.044	14.1	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.6	gi|257052465|ref|YP_003130298.1|	-	0.029	14.5	0.1	0.06	13.5	0.1	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_11	PF13086.6	gi|257052465|ref|YP_003130298.1|	-	0.11	12.2	0.0	0.22	11.3	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
Mucin	PF01456.17	gi|257052465|ref|YP_003130298.1|	-	2.2	8.3	8.1	3.9	7.5	8.1	1.3	1	0	0	1	1	1	0	Mucin-like	glycoprotein
NAD_kinase	PF01513.21	gi|257052466|ref|YP_003130299.1|	-	3.3e-34	118.4	1.5	5e-34	117.8	1.5	1.3	1	1	0	1	1	1	1	ATP-NAD	kinase
DAGK_cat	PF00781.24	gi|257052466|ref|YP_003130299.1|	-	0.039	13.6	0.1	0.069	12.8	0.1	1.5	1	0	0	1	1	1	0	Diacylglycerol	kinase	catalytic	domain
zf-ribbon_3	PF13248.6	gi|257052469|ref|YP_003130302.1|	-	0.05	13.0	2.7	1.7	8.2	2.7	2.3	1	1	0	1	1	1	0	zinc-ribbon	domain
Auto_anti-p27	PF06677.12	gi|257052469|ref|YP_003130302.1|	-	0.061	13.5	0.1	0.081	13.1	0.1	1.2	1	0	0	1	1	1	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
SIR4_SID	PF16991.5	gi|257052469|ref|YP_003130302.1|	-	0.14	12.2	0.2	0.16	12.0	0.2	1.1	1	0	0	1	1	1	0	Sir4	SID	domain
HypA	PF01155.19	gi|257052469|ref|YP_003130302.1|	-	0.14	12.2	0.6	0.19	11.7	0.6	1.3	1	1	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
GET2	PF08690.10	gi|257052469|ref|YP_003130302.1|	-	0.46	10.1	1.9	0.51	10.0	1.9	1.0	1	0	0	1	1	1	0	GET	complex	subunit	GET2
Calici_coat	PF00915.20	gi|257052469|ref|YP_003130302.1|	-	1.9	7.3	3.7	2.2	7.1	3.7	1.1	1	0	0	1	1	1	0	Calicivirus	coat	protein
Bac_luciferase	PF00296.20	gi|257052471|ref|YP_003130304.1|	-	2.5e-65	221.0	8.2	3.2e-65	220.6	8.2	1.0	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
F420_ligase	PF01996.16	gi|257052472|ref|YP_003130305.1|	-	1.3e-54	185.1	0.0	1.7e-54	184.8	0.0	1.1	1	0	0	1	1	1	1	F420-0:Gamma-glutamyl	ligase
Metallophos_2	PF12850.7	gi|257052473|ref|YP_003130306.1|	-	6.4e-27	94.8	0.2	7.3e-27	94.6	0.2	1.0	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|257052473|ref|YP_003130306.1|	-	0.11	13.0	0.7	0.62	10.5	0.1	1.9	1	1	1	2	2	2	0	Calcineurin-like	phosphoesterase
IF-2B	PF01008.17	gi|257052474|ref|YP_003130307.1|	-	6.1e-40	137.2	0.0	7.6e-40	136.9	0.0	1.1	1	0	0	1	1	1	1	Initiation	factor	2	subunit	family
Phage_integrase	PF00589.22	gi|257052475|ref|YP_003130308.1|	-	2.6e-23	82.7	0.0	4.6e-23	81.9	0.0	1.4	1	0	0	1	1	1	1	Phage	integrase	family
zf-ribbon_3	PF13248.6	gi|257052475|ref|YP_003130308.1|	-	0.00023	20.4	3.5	0.00058	19.2	3.5	1.6	1	0	0	1	1	1	1	zinc-ribbon	domain
UPF0547	PF10571.9	gi|257052475|ref|YP_003130308.1|	-	0.00036	20.5	1.4	0.00065	19.7	1.4	1.4	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0547
DUF3435	PF11917.8	gi|257052475|ref|YP_003130308.1|	-	0.00062	18.8	0.2	0.0026	16.7	0.0	1.9	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF3435)
DZR	PF12773.7	gi|257052475|ref|YP_003130308.1|	-	0.00079	19.4	0.5	0.0016	18.4	0.5	1.4	1	0	0	1	1	1	1	Double	zinc	ribbon
Phage_int_SAM_1	PF02899.17	gi|257052475|ref|YP_003130308.1|	-	0.00095	19.4	0.6	0.72	10.2	0.1	3.0	2	1	1	3	3	3	2	Phage	integrase,	N-terminal	SAM-like	domain
zinc_ribbon_2	PF13240.6	gi|257052475|ref|YP_003130308.1|	-	0.0039	16.8	1.9	0.0078	15.9	1.9	1.5	1	0	0	1	1	1	1	zinc-ribbon	domain
Phage_integr_3	PF16795.5	gi|257052475|ref|YP_003130308.1|	-	0.013	15.4	0.0	0.2	11.6	0.0	2.2	2	0	0	2	2	2	0	Archaeal	phage	integrase
Phage_int_SAM_4	PF13495.6	gi|257052475|ref|YP_003130308.1|	-	0.02	15.4	0.0	0.05	14.1	0.0	1.7	1	0	0	1	1	1	0	Phage	integrase,	N-terminal	SAM-like	domain
Zn_ribbon_17	PF17120.5	gi|257052475|ref|YP_003130308.1|	-	0.084	12.5	0.1	0.15	11.7	0.1	1.4	1	0	0	1	1	1	0	Zinc-ribbon,	C4HC2	type
Phage_int_SAM_5	PF13102.6	gi|257052475|ref|YP_003130308.1|	-	0.098	13.0	0.0	2.4	8.5	0.0	2.7	2	0	0	2	2	2	0	Phage	integrase	SAM-like	domain
zinc_ribbon_15	PF17032.5	gi|257052475|ref|YP_003130308.1|	-	0.13	13.0	0.2	0.23	12.2	0.2	1.4	1	0	0	1	1	1	0	zinc-ribbon	family
Glyco_hydro_43	PF04616.14	gi|257052476|ref|YP_003130309.1|	-	2.9e-88	295.9	0.1	3.7e-88	295.6	0.1	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	43
GH43_C2	PF17851.1	gi|257052476|ref|YP_003130309.1|	-	1.2e-35	123.1	0.0	1.6e-35	122.7	0.0	1.2	1	0	0	1	1	1	1	Beta	xylosidase	C-terminal	Concanavalin	A-like	domain
Rhodanese	PF00581.20	gi|257052477|ref|YP_003130310.1|	-	1e-14	54.9	0.0	1.2e-14	54.7	0.0	1.1	1	0	0	1	1	1	1	Rhodanese-like	domain
NUDIX	PF00293.28	gi|257052478|ref|YP_003130311.1|	-	2e-15	57.0	0.3	2.7e-15	56.6	0.3	1.2	1	0	0	1	1	1	1	NUDIX	domain
Mitoc_L55	PF09776.9	gi|257052480|ref|YP_003130313.1|	-	0.12	12.2	0.0	0.27	11.0	0.0	1.5	2	0	0	2	2	2	0	Mitochondrial	ribosomal	protein	L55
zf-C2H2_9	PF16293.5	gi|257052481|ref|YP_003130314.1|	-	0.00021	21.1	0.0	0.00034	20.4	0.0	1.3	1	0	0	1	1	1	1	C2H2	type	zinc-finger	(1	copy)
zf-Di19	PF05605.12	gi|257052481|ref|YP_003130314.1|	-	0.18	12.2	0.2	0.42	10.9	0.2	1.5	1	0	0	1	1	1	0	Drought	induced	19	protein	(Di19),	zinc-binding
Acetyltransf_1	PF00583.25	gi|257052482|ref|YP_003130315.1|	-	9e-16	58.2	0.0	1.1e-15	57.9	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|257052482|ref|YP_003130315.1|	-	2.4e-11	43.9	0.0	3.3e-11	43.4	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|257052482|ref|YP_003130315.1|	-	1.1e-09	38.3	0.0	1.5e-09	37.8	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|257052482|ref|YP_003130315.1|	-	7e-06	26.1	0.0	9.8e-06	25.7	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|257052482|ref|YP_003130315.1|	-	2.5e-05	24.1	0.0	3.8e-05	23.6	0.0	1.2	1	0	0	1	1	1	1	FR47-like	protein
Ntox28	PF15605.6	gi|257052482|ref|YP_003130315.1|	-	0.0076	16.5	0.0	0.012	15.9	0.0	1.3	1	0	0	1	1	1	1	Bacterial	toxin	28
Acetyltransf_8	PF13523.6	gi|257052482|ref|YP_003130315.1|	-	0.036	13.7	0.0	0.056	13.1	0.0	1.2	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.7	gi|257052482|ref|YP_003130315.1|	-	0.037	14.7	0.0	0.048	14.3	0.0	1.2	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
MFS_4	PF06779.14	gi|257052483|ref|YP_003130316.1|	-	0.0053	16.1	1.4	0.0058	16.0	1.4	1.0	1	0	0	1	1	1	1	Uncharacterised	MFS-type	transporter	YbfB
AI-2E_transport	PF01594.16	gi|257052483|ref|YP_003130316.1|	-	0.023	13.9	3.8	0.029	13.5	3.8	1.1	1	0	0	1	1	1	0	AI-2E	family	transporter
PrsW-protease	PF13367.6	gi|257052484|ref|YP_003130317.1|	-	8e-42	142.9	20.5	8e-42	142.9	20.5	1.7	2	0	0	2	2	2	1	PrsW	family	intramembrane	metalloprotease
YbgT_YccB	PF08173.11	gi|257052484|ref|YP_003130317.1|	-	0.41	10.8	3.5	2.1	8.5	3.5	2.4	1	0	0	1	1	1	0	Membrane	bound	YbgT-like	protein
SNO	PF01174.19	gi|257052485|ref|YP_003130318.1|	-	6.5e-52	176.1	0.0	7.2e-52	176.0	0.0	1.0	1	0	0	1	1	1	1	SNO	glutamine	amidotransferase	family
GATase_3	PF07685.14	gi|257052485|ref|YP_003130318.1|	-	5.4e-09	35.9	0.0	8.4e-09	35.3	0.0	1.3	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
Peptidase_S51	PF03575.17	gi|257052485|ref|YP_003130318.1|	-	1.5e-05	24.7	0.0	1.9e-05	24.4	0.0	1.1	1	0	0	1	1	1	1	Peptidase	family	S51
GATase	PF00117.28	gi|257052485|ref|YP_003130318.1|	-	0.00078	19.3	0.0	0.0022	17.8	0.0	1.7	1	1	0	1	1	1	1	Glutamine	amidotransferase	class-I
DJ-1_PfpI	PF01965.24	gi|257052485|ref|YP_003130318.1|	-	0.003	17.4	0.1	0.0051	16.6	0.1	1.4	1	0	0	1	1	1	1	DJ-1/PfpI	family
BPL_N	PF09825.9	gi|257052485|ref|YP_003130318.1|	-	0.067	12.3	0.0	0.14	11.2	0.0	1.4	1	0	0	1	1	1	0	Biotin-protein	ligase,	N	terminal
Cyt_bd_oxida_I	PF01654.17	gi|257052486|ref|YP_003130319.1|	-	7.8e-143	476.1	21.2	8.8e-143	475.9	21.2	1.0	1	0	0	1	1	1	1	Cytochrome	bd	terminal	oxidase	subunit	I
Exosortase_EpsH	PF09721.10	gi|257052486|ref|YP_003130319.1|	-	0.00097	18.7	1.6	0.00097	18.7	1.6	3.3	3	1	0	3	3	3	2	Transmembrane	exosortase	(Exosortase_EpsH)
DUF2627	PF11118.8	gi|257052486|ref|YP_003130319.1|	-	0.0043	17.6	0.1	0.0043	17.6	0.1	3.3	3	0	0	3	3	3	1	Protein	of	unknown	function	(DUF2627)
Insulin_TMD	PF17870.1	gi|257052486|ref|YP_003130319.1|	-	0.53	10.4	0.1	0.53	10.4	0.1	2.3	2	0	0	2	2	2	0	Insulin	receptor	trans-membrane	segment
Cyt_bd_oxida_II	PF02322.15	gi|257052487|ref|YP_003130320.1|	-	2.3e-62	211.1	32.9	2.6e-62	210.9	32.9	1.0	1	0	0	1	1	1	1	Cytochrome	bd	terminal	oxidase	subunit	II
TrkH	PF02386.16	gi|257052488|ref|YP_003130321.1|	-	1.5e-61	208.4	10.1	6.4e-61	206.3	10.1	1.7	1	1	0	1	1	1	1	Cation	transport	protein
PRA-PH	PF01503.17	gi|257052489|ref|YP_003130322.1|	-	6.8e-18	64.9	2.6	7.5e-18	64.8	2.6	1.0	1	0	0	1	1	1	1	Phosphoribosyl-ATP	pyrophosphohydrolase
MazG	PF03819.17	gi|257052489|ref|YP_003130322.1|	-	0.00062	19.9	2.7	0.001	19.2	2.7	1.4	1	0	0	1	1	1	1	MazG	nucleotide	pyrophosphohydrolase	domain
Helicase_C_2	PF13307.6	gi|257052492|ref|YP_003130325.1|	-	1.8e-29	103.1	0.0	4.6e-29	101.8	0.0	1.6	2	0	0	2	2	1	1	Helicase	C-terminal	domain
DEAD_2	PF06733.15	gi|257052492|ref|YP_003130325.1|	-	3.1e-18	66.0	0.0	6.5e-18	65.0	0.0	1.5	1	1	0	1	1	1	1	DEAD_2
DEAD	PF00270.29	gi|257052492|ref|YP_003130325.1|	-	2.2e-10	40.6	0.3	3.5e-08	33.4	0.1	3.0	3	0	0	3	3	3	1	DEAD/DEAH	box	helicase
ResIII	PF04851.15	gi|257052492|ref|YP_003130325.1|	-	1.1e-06	28.8	0.1	4.4e-05	23.5	0.1	2.3	1	1	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
ATPase	PF06745.13	gi|257052492|ref|YP_003130325.1|	-	0.00032	20.1	0.6	0.0012	18.2	0.6	1.9	1	1	0	1	1	1	1	KaiC
DUF2075	PF09848.9	gi|257052492|ref|YP_003130325.1|	-	0.0067	15.7	0.4	0.29	10.3	0.0	2.6	2	1	0	3	3	3	1	Uncharacterized	conserved	protein	(DUF2075)
AAA_22	PF13401.6	gi|257052492|ref|YP_003130325.1|	-	0.012	15.9	0.9	0.13	12.5	0.1	2.7	3	0	0	3	3	3	0	AAA	domain
Zot	PF05707.12	gi|257052492|ref|YP_003130325.1|	-	0.018	14.7	0.0	0.94	9.1	0.0	2.3	2	0	0	2	2	2	0	Zonular	occludens	toxin	(Zot)
PhoH	PF02562.16	gi|257052492|ref|YP_003130325.1|	-	0.026	14.0	0.0	0.077	12.4	0.0	1.7	2	0	0	2	2	2	0	PhoH-like	protein
HBB	PF06777.11	gi|257052492|ref|YP_003130325.1|	-	0.049	13.3	0.0	0.11	12.2	0.0	1.5	1	0	0	1	1	1	0	Helical	and	beta-bridge	domain
AAA_25	PF13481.6	gi|257052492|ref|YP_003130325.1|	-	0.062	12.9	0.5	0.29	10.7	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
Sigma54_activat	PF00158.26	gi|257052492|ref|YP_003130325.1|	-	0.066	12.9	0.0	0.12	12.0	0.0	1.4	1	0	0	1	1	1	0	Sigma-54	interaction	domain
ALIX_LYPXL_bnd	PF13949.6	gi|257052492|ref|YP_003130325.1|	-	0.072	12.4	4.8	0.064	12.5	1.8	2.0	2	0	0	2	2	2	0	ALIX	V-shaped	domain	binding	to	HIV
AAA_34	PF13872.6	gi|257052492|ref|YP_003130325.1|	-	0.082	11.8	0.0	0.15	10.9	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	NTP	hydrolase	pore-1
DUF1441	PF07278.11	gi|257052492|ref|YP_003130325.1|	-	0.099	12.6	0.6	0.27	11.2	0.6	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1441)
TrwB_AAD_bind	PF10412.9	gi|257052492|ref|YP_003130325.1|	-	0.1	11.5	0.1	0.19	10.6	0.1	1.3	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
Alk_phosphatase	PF00245.20	gi|257052492|ref|YP_003130325.1|	-	0.11	11.4	1.0	0.24	10.3	0.1	1.9	3	0	0	3	3	3	0	Alkaline	phosphatase
CENP-H	PF05837.12	gi|257052492|ref|YP_003130325.1|	-	0.12	12.8	3.7	0.32	11.4	3.7	1.7	1	0	0	1	1	1	0	Centromere	protein	H	(CENP-H)
SecA_DEAD	PF07517.14	gi|257052492|ref|YP_003130325.1|	-	0.12	11.6	0.3	0.32	10.2	0.0	1.8	2	0	0	2	2	2	0	SecA	DEAD-like	domain
AAA	PF00004.29	gi|257052492|ref|YP_003130325.1|	-	0.35	11.3	1.6	4.2	7.8	1.5	2.6	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.6	gi|257052492|ref|YP_003130325.1|	-	0.67	10.3	9.0	1.8	9.0	5.8	2.9	2	1	0	2	2	2	0	AAA	ATPase	domain
Pup	PF05639.11	gi|257052492|ref|YP_003130325.1|	-	3.1	8.8	6.5	15	6.5	6.5	2.3	1	0	0	1	1	1	0	Pup-like	protein
HSP20	PF00011.21	gi|257052493|ref|YP_003130326.1|	-	1.9e-16	60.1	0.0	2.8e-16	59.5	0.0	1.3	1	0	0	1	1	1	1	Hsp20/alpha	crystallin	family
ArsA_HSP20	PF17886.1	gi|257052493|ref|YP_003130326.1|	-	5.2e-07	29.1	0.0	1.1e-06	28.1	0.0	1.6	1	1	0	1	1	1	1	HSP20-like	domain	found	in	ArsA
DUF5006	PF16397.5	gi|257052493|ref|YP_003130326.1|	-	0.065	12.4	0.0	0.09	11.9	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5006)
Aldo_ket_red	PF00248.21	gi|257052494|ref|YP_003130327.1|	-	2.2e-71	240.5	0.0	2.4e-71	240.3	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
ABC_tran	PF00005.27	gi|257052496|ref|YP_003130329.1|	-	8.2e-27	94.4	0.0	1.1e-26	94.0	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|257052496|ref|YP_003130329.1|	-	3.8e-14	53.2	0.1	5.3e-07	29.7	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_23	PF13476.6	gi|257052496|ref|YP_003130329.1|	-	0.00076	20.0	0.0	0.0009	19.8	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|257052496|ref|YP_003130329.1|	-	0.0022	17.7	0.3	0.0043	16.8	0.3	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|257052496|ref|YP_003130329.1|	-	0.0039	16.9	0.2	0.007	16.1	0.2	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_27	PF13514.6	gi|257052496|ref|YP_003130329.1|	-	0.0054	16.4	0.0	0.0085	15.7	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
SRP54	PF00448.22	gi|257052496|ref|YP_003130329.1|	-	0.0088	15.7	0.2	0.015	15.0	0.2	1.3	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
CbiA	PF01656.23	gi|257052496|ref|YP_003130329.1|	-	0.012	15.6	0.0	0.022	14.8	0.0	1.4	1	1	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
SMC_N	PF02463.19	gi|257052496|ref|YP_003130329.1|	-	0.013	15.0	0.1	2.5	7.5	0.0	2.1	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|257052496|ref|YP_003130329.1|	-	0.017	15.4	0.1	0.029	14.6	0.1	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_18	PF13238.6	gi|257052496|ref|YP_003130329.1|	-	0.06	13.9	0.0	0.52	10.9	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_25	PF13481.6	gi|257052496|ref|YP_003130329.1|	-	0.062	12.9	0.0	0.11	12.1	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|257052496|ref|YP_003130329.1|	-	0.083	13.3	0.2	0.16	12.4	0.2	1.7	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_15	PF13175.6	gi|257052496|ref|YP_003130329.1|	-	0.09	12.5	0.0	0.12	12.1	0.0	1.3	1	1	0	1	1	1	0	AAA	ATPase	domain
Rad17	PF03215.15	gi|257052496|ref|YP_003130329.1|	-	0.1	12.5	0.0	0.17	11.8	0.0	1.3	1	0	0	1	1	1	0	Rad17	P-loop	domain
AAA_24	PF13479.6	gi|257052496|ref|YP_003130329.1|	-	0.11	12.2	0.0	0.16	11.7	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
DUF853	PF05872.12	gi|257052496|ref|YP_003130329.1|	-	0.11	11.0	0.1	0.16	10.5	0.1	1.1	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF853)
AAA_5	PF07728.14	gi|257052496|ref|YP_003130329.1|	-	0.12	12.4	0.0	0.36	10.8	0.0	1.8	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_33	PF13671.6	gi|257052496|ref|YP_003130329.1|	-	0.2	11.8	0.2	0.4	10.8	0.1	1.5	1	1	0	1	1	1	0	AAA	domain
ABC2_membrane_3	PF12698.7	gi|257052497|ref|YP_003130330.1|	-	3.5e-36	125.0	14.8	4.4e-36	124.7	14.8	1.0	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.7	gi|257052497|ref|YP_003130330.1|	-	1.2e-13	51.0	12.9	2e-13	50.3	12.9	1.4	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.24	gi|257052497|ref|YP_003130330.1|	-	1.6e-08	34.2	12.7	1.6e-08	34.2	12.7	2.5	3	0	0	3	3	3	1	ABC-2	type	transporter
ABC2_membrane_5	PF13346.6	gi|257052497|ref|YP_003130330.1|	-	7.1e-06	25.7	15.3	7.1e-06	25.7	15.3	2.1	2	1	0	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.7	gi|257052497|ref|YP_003130330.1|	-	0.00021	21.3	6.8	0.00021	21.3	6.8	2.5	2	1	1	3	3	3	1	ABC-2	family	transporter	protein
DUF1684	PF07920.11	gi|257052498|ref|YP_003130331.1|	-	1.3e-50	171.3	0.0	1.7e-50	171.0	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1684)
Glu_synthase	PF01645.17	gi|257052500|ref|YP_003130333.1|	-	9.7e-12	44.7	0.0	3.9e-09	36.1	0.0	2.1	2	0	0	2	2	2	2	Conserved	region	in	glutamate	synthase
Hydrolase	PF00702.26	gi|257052500|ref|YP_003130333.1|	-	0.014	15.7	0.1	0.035	14.4	0.1	1.7	2	0	0	2	2	2	0	haloacid	dehalogenase-like	hydrolase
PPDK_N	PF01326.19	gi|257052500|ref|YP_003130333.1|	-	0.044	13.1	0.0	0.072	12.3	0.0	1.3	1	0	0	1	1	1	0	Pyruvate	phosphate	dikinase,	PEP/pyruvate	binding	domain
BCA_ABC_TP_C	PF12399.8	gi|257052500|ref|YP_003130333.1|	-	0.18	11.8	3.5	0.69	9.9	0.2	2.9	2	0	0	2	2	2	0	Branched-chain	amino	acid	ATP-binding	cassette	transporter
Pyr_redox_2	PF07992.14	gi|257052501|ref|YP_003130334.1|	-	6.2e-57	193.1	3.0	8.2e-57	192.7	3.0	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|257052501|ref|YP_003130334.1|	-	7.9e-24	84.0	0.7	5.8e-19	68.4	0.1	3.4	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|257052501|ref|YP_003130334.1|	-	1.5e-13	51.0	0.0	3.5e-13	49.8	0.0	1.6	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
DAO	PF01266.24	gi|257052501|ref|YP_003130334.1|	-	3.1e-10	40.2	6.3	0.0032	17.1	1.7	4.1	3	1	1	4	4	4	4	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.6	gi|257052501|ref|YP_003130334.1|	-	2.9e-08	33.3	1.2	0.028	13.7	0.0	3.7	2	2	1	3	3	3	3	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|257052501|ref|YP_003130334.1|	-	3.7e-08	33.5	0.4	0.011	16.0	0.1	2.6	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
HI0933_like	PF03486.14	gi|257052501|ref|YP_003130334.1|	-	1e-06	27.8	0.2	0.075	11.7	0.0	3.8	3	1	1	4	4	4	2	HI0933-like	protein
Amino_oxidase	PF01593.24	gi|257052501|ref|YP_003130334.1|	-	0.00014	21.3	0.5	0.7	9.1	0.0	2.7	1	1	1	2	2	2	2	Flavin	containing	amine	oxidoreductase
FAD_oxidored	PF12831.7	gi|257052501|ref|YP_003130334.1|	-	0.0046	16.3	0.0	0.051	12.9	0.0	2.2	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
Lycopene_cycl	PF05834.12	gi|257052501|ref|YP_003130334.1|	-	0.014	14.5	1.2	2.4	7.1	0.0	3.1	3	0	0	3	3	3	0	Lycopene	cyclase	protein
3HCDH_N	PF02737.18	gi|257052501|ref|YP_003130334.1|	-	0.022	14.6	0.1	0.036	13.9	0.1	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
TrkA_N	PF02254.18	gi|257052501|ref|YP_003130334.1|	-	0.027	14.7	1.4	4.5	7.6	0.4	3.6	3	1	0	3	3	2	0	TrkA-N	domain
polyprenyl_synt	PF00348.17	gi|257052502|ref|YP_003130335.1|	-	5.5e-53	179.6	0.0	6.6e-53	179.4	0.0	1.0	1	0	0	1	1	1	1	Polyprenyl	synthetase
HTH_IclR	PF09339.10	gi|257052503|ref|YP_003130336.1|	-	0.0039	17.0	0.0	0.011	15.5	0.0	1.8	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|257052503|ref|YP_003130336.1|	-	0.036	13.9	0.0	0.084	12.8	0.0	1.5	1	0	0	1	1	1	0	MarR	family
SpoIIIAH	PF12685.7	gi|257052503|ref|YP_003130336.1|	-	0.041	13.7	0.2	0.062	13.1	0.2	1.3	1	0	0	1	1	1	0	SpoIIIAH-like	protein
DUF2848	PF11010.8	gi|257052504|ref|YP_003130337.1|	-	0.085	12.4	0.9	0.23	11.1	0.1	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2848)
Pap_E4	PF02711.14	gi|257052504|ref|YP_003130337.1|	-	0.29	12.1	4.1	0.54	11.3	1.5	2.8	2	1	0	3	3	3	0	E4	protein
Pilin_N	PF07790.11	gi|257052505|ref|YP_003130338.1|	-	9.5e-17	61.7	4.4	1e-16	61.6	3.2	1.6	2	0	0	2	2	2	1	Archaeal	Type	IV	pilin,	N-terminal
Methyltransf_11	PF08241.12	gi|257052506|ref|YP_003130339.1|	-	6.3e-26	90.9	0.0	1.3e-25	89.8	0.0	1.5	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|257052506|ref|YP_003130339.1|	-	2.4e-22	79.5	0.0	4.3e-22	78.6	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|257052506|ref|YP_003130339.1|	-	8.8e-20	71.0	0.0	1.1e-19	70.8	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|257052506|ref|YP_003130339.1|	-	2.9e-17	63.0	0.0	4.1e-17	62.5	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|257052506|ref|YP_003130339.1|	-	1.1e-16	60.9	0.0	5.1e-13	48.9	0.0	2.0	1	1	1	2	2	2	2	ubiE/COQ5	methyltransferase	family
Methyltransf_12	PF08242.12	gi|257052506|ref|YP_003130339.1|	-	3.9e-15	56.4	0.0	6.2e-15	55.8	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
MetW	PF07021.12	gi|257052506|ref|YP_003130339.1|	-	2.3e-06	27.3	0.0	3.3e-06	26.8	0.0	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
PCMT	PF01135.19	gi|257052506|ref|YP_003130339.1|	-	2.6e-05	24.1	0.0	3.4e-05	23.7	0.0	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_9	PF08003.11	gi|257052506|ref|YP_003130339.1|	-	0.00021	20.4	0.0	0.00028	19.9	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
RrnaAD	PF00398.20	gi|257052506|ref|YP_003130339.1|	-	0.00024	20.3	0.0	0.0004	19.5	0.0	1.3	2	0	0	2	2	2	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_29	PF03141.16	gi|257052506|ref|YP_003130339.1|	-	0.0029	16.2	0.0	0.0039	15.8	0.0	1.2	1	0	0	1	1	1	1	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
Methyltransf_2	PF00891.18	gi|257052506|ref|YP_003130339.1|	-	0.015	14.6	0.0	0.029	13.6	0.0	1.4	1	1	0	1	1	1	0	O-methyltransferase	domain
Methyltransf_8	PF05148.15	gi|257052506|ref|YP_003130339.1|	-	0.015	15.1	0.0	0.032	14.1	0.0	1.5	1	1	0	1	1	1	0	Hypothetical	methyltransferase
MTS	PF05175.14	gi|257052506|ref|YP_003130339.1|	-	0.034	13.7	0.0	0.065	12.8	0.0	1.4	2	0	0	2	2	2	0	Methyltransferase	small	domain
CMAS	PF02353.20	gi|257052506|ref|YP_003130339.1|	-	0.047	13.0	0.0	0.054	12.8	0.0	1.2	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
ATP-synt_B	PF00430.18	gi|257052507|ref|YP_003130340.1|	-	3.6e-06	27.1	27.2	4.4e-06	26.8	26.4	1.5	1	1	0	1	1	1	1	ATP	synthase	B/B'	CF(0)
V-ATPase_G_2	PF16999.5	gi|257052507|ref|YP_003130340.1|	-	2.2e-05	24.8	23.7	3.4e-05	24.2	23.7	1.3	1	0	0	1	1	1	1	Vacuolar	(H+)-ATPase	G	subunit
V-ATPase_G	PF03179.15	gi|257052507|ref|YP_003130340.1|	-	4e-05	24.1	18.3	5.4e-05	23.7	18.3	1.2	1	0	0	1	1	1	1	Vacuolar	(H+)-ATPase	G	subunit
HrpE	PF06188.12	gi|257052507|ref|YP_003130340.1|	-	0.00028	20.8	14.0	0.0015	18.5	14.0	1.8	1	1	0	1	1	1	1	HrpE/YscL/FliH	and	V-type	ATPase	subunit	E
DivIVA	PF05103.13	gi|257052507|ref|YP_003130340.1|	-	0.0012	19.0	16.8	0.074	13.1	11.2	2.1	1	1	1	2	2	2	2	DivIVA	protein
DUF3552	PF12072.8	gi|257052507|ref|YP_003130340.1|	-	0.0066	15.9	25.2	0.02	14.3	17.6	2.0	1	1	1	2	2	2	2	Domain	of	unknown	function	(DUF3552)
PIN_8	PF18476.1	gi|257052507|ref|YP_003130340.1|	-	0.12	12.2	6.0	0.13	12.1	6.0	1.0	1	0	0	1	1	1	0	PIN	like	domain
Phasin	PF05597.11	gi|257052507|ref|YP_003130340.1|	-	0.22	11.5	12.0	0.17	11.9	3.1	2.1	1	1	1	2	2	2	0	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
DUF883	PF05957.13	gi|257052507|ref|YP_003130340.1|	-	0.28	11.8	19.8	1.4	9.6	8.1	2.1	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF883)
Apolipoprotein	PF01442.18	gi|257052507|ref|YP_003130340.1|	-	0.52	10.2	24.1	0.99	9.2	24.1	1.4	1	1	0	1	1	1	0	Apolipoprotein	A1/A4/E	domain
Phage_Mu_Gam	PF07352.12	gi|257052507|ref|YP_003130340.1|	-	0.53	10.2	16.1	17	5.3	16.1	2.2	1	1	0	1	1	1	0	Bacteriophage	Mu	Gam	like	protein
YtxH	PF12732.7	gi|257052507|ref|YP_003130340.1|	-	0.89	10.1	13.3	3.7	8.2	4.5	2.2	1	1	1	2	2	2	0	YtxH-like	protein
Caudo_TAP	PF02413.17	gi|257052507|ref|YP_003130340.1|	-	1.4	9.0	12.4	0.93	9.6	7.1	2.1	1	1	1	2	2	2	0	Caudovirales	tail	fibre	assembly	protein,	lambda	gpK
OmpH	PF03938.14	gi|257052507|ref|YP_003130340.1|	-	1.8	8.9	14.7	2.2	8.6	14.7	1.1	1	0	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
Remorin_C	PF03763.13	gi|257052507|ref|YP_003130340.1|	-	5.2	7.0	18.5	55	3.7	1.9	2.1	1	1	1	2	2	2	0	Remorin,	C-terminal	region
zf-C4H2	PF10146.9	gi|257052507|ref|YP_003130340.1|	-	6	7.1	9.0	7.1	6.9	9.0	1.1	1	0	0	1	1	1	0	Zinc	finger-containing	protein
AAA_11	PF13086.6	gi|257052507|ref|YP_003130340.1|	-	7.1	6.3	8.7	8	6.2	8.7	1.1	1	0	0	1	1	1	0	AAA	domain
PRKCSH-like	PF12999.7	gi|257052507|ref|YP_003130340.1|	-	8.1	6.2	7.3	12	5.7	0.3	2.0	1	1	1	2	2	2	0	Glucosidase	II	beta	subunit-like
V_ATPase_I	PF01496.19	gi|257052508|ref|YP_003130341.1|	-	1.4e-17	62.9	7.9	6.4e-08	31.0	0.8	4.1	5	0	0	5	5	5	3	V-type	ATPase	116kDa	subunit	family
FlaC_arch	PF05377.11	gi|257052508|ref|YP_003130341.1|	-	0.026	14.9	0.9	4.2	7.8	0.1	2.7	2	0	0	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
Spc24	PF08286.11	gi|257052508|ref|YP_003130341.1|	-	0.05	13.9	0.5	0.52	10.6	0.0	2.2	2	0	0	2	2	2	0	Spc24	subunit	of	Ndc80
KfrA_N	PF11740.8	gi|257052508|ref|YP_003130341.1|	-	0.09	13.5	2.4	7.5	7.3	0.3	3.1	3	0	0	3	3	3	0	Plasmid	replication	region	DNA-binding	N-term
TMF_TATA_bd	PF12325.8	gi|257052508|ref|YP_003130341.1|	-	0.11	12.7	3.0	3.2	8.0	0.8	2.3	2	0	0	2	2	2	0	TATA	element	modulatory	factor	1	TATA	binding
TMF_DNA_bd	PF12329.8	gi|257052508|ref|YP_003130341.1|	-	0.15	12.1	0.5	9.3	6.3	0.1	2.2	2	0	0	2	2	2	0	TATA	element	modulatory	factor	1	DNA	binding
Prefoldin_2	PF01920.20	gi|257052508|ref|YP_003130341.1|	-	0.16	11.9	0.2	9	6.3	0.3	2.3	2	0	0	2	2	2	0	Prefoldin	subunit
NPV_P10	PF05531.12	gi|257052508|ref|YP_003130341.1|	-	0.16	12.5	0.1	0.4	11.2	0.1	1.6	1	0	0	1	1	1	0	Nucleopolyhedrovirus	P10	protein
DUF4140	PF13600.6	gi|257052508|ref|YP_003130341.1|	-	0.17	12.3	2.0	3.6	8.1	0.6	2.4	2	0	0	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
Syntaxin-6_N	PF09177.11	gi|257052508|ref|YP_003130341.1|	-	0.19	12.3	0.6	33	5.1	0.1	2.5	2	0	0	2	2	2	0	Syntaxin	6,	N-terminal
XhlA	PF10779.9	gi|257052508|ref|YP_003130341.1|	-	0.59	10.4	2.2	2	8.7	2.2	1.9	1	0	0	1	1	1	0	Haemolysin	XhlA
DegS	PF05384.11	gi|257052508|ref|YP_003130341.1|	-	0.95	8.9	3.5	3.1	7.3	0.2	2.2	2	0	0	2	2	2	0	Sensor	protein	DegS
DivIC	PF04977.15	gi|257052508|ref|YP_003130341.1|	-	1.4	8.8	2.9	1.6	8.5	0.4	2.1	2	0	0	2	2	2	0	Septum	formation	initiator
CENP-F_leu_zip	PF10473.9	gi|257052508|ref|YP_003130341.1|	-	2.3	8.2	4.9	7.8	6.5	0.4	2.2	2	0	0	2	2	2	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
APG6_N	PF17675.1	gi|257052508|ref|YP_003130341.1|	-	2.6	8.6	5.8	7.7	7.1	0.6	2.2	2	0	0	2	2	2	0	Apg6	coiled-coil	region
ATP-synt_C	PF00137.21	gi|257052509|ref|YP_003130342.1|	-	3.3e-13	49.8	7.2	3.8e-13	49.6	7.2	1.0	1	0	0	1	1	1	1	ATP	synthase	subunit	C
vATP-synt_E	PF01991.18	gi|257052510|ref|YP_003130343.1|	-	1.5e-40	138.8	11.7	2.2e-40	138.2	11.7	1.2	1	0	0	1	1	1	1	ATP	synthase	(E/31	kDa)	subunit
V-ATPase_G_2	PF16999.5	gi|257052510|ref|YP_003130343.1|	-	5.6e-05	23.5	17.2	0.00013	22.4	17.2	1.6	1	0	0	1	1	1	1	Vacuolar	(H+)-ATPase	G	subunit
DivIVA	PF05103.13	gi|257052510|ref|YP_003130343.1|	-	0.007	16.5	9.3	0.007	16.5	9.3	2.1	1	1	1	2	2	2	1	DivIVA	protein
HrpE	PF06188.12	gi|257052510|ref|YP_003130343.1|	-	0.0085	16.0	8.5	0.014	15.3	8.5	1.3	1	0	0	1	1	1	1	HrpE/YscL/FliH	and	V-type	ATPase	subunit	E
D5_N	PF08706.11	gi|257052510|ref|YP_003130343.1|	-	0.04	14.2	1.4	0.073	13.3	1.4	1.4	1	0	0	1	1	1	0	D5	N	terminal	like
Mt_ATP-synt_B	PF05405.14	gi|257052510|ref|YP_003130343.1|	-	0.79	9.3	5.6	2.2	7.9	5.6	1.7	1	1	0	1	1	1	0	Mitochondrial	ATP	synthase	B	chain	precursor	(ATP-synt_B)
ATP-synt_B	PF00430.18	gi|257052510|ref|YP_003130343.1|	-	1.3	9.1	22.8	7.3	6.7	21.8	2.2	1	1	1	2	2	2	0	ATP	synthase	B/B'	CF(0)
YtxH	PF12732.7	gi|257052510|ref|YP_003130343.1|	-	5.5	7.6	7.6	7.4	7.2	4.5	2.7	2	1	0	2	2	2	0	YtxH-like	protein
vATP-synt_AC39	PF01992.16	gi|257052511|ref|YP_003130344.1|	-	1.7e-78	264.5	6.2	1.9e-78	264.3	6.2	1.0	1	0	0	1	1	1	1	ATP	synthase	(C/AC39)	subunit
AntA	PF08346.12	gi|257052511|ref|YP_003130344.1|	-	0.13	12.9	0.0	0.31	11.6	0.0	1.7	1	0	0	1	1	1	0	AntA/AntB	antirepressor
ATP-synt_F	PF01990.17	gi|257052512|ref|YP_003130345.1|	-	5.5e-16	58.7	0.1	6.3e-16	58.5	0.1	1.0	1	0	0	1	1	1	1	ATP	synthase	(F/14-kDa)	subunit
T2SSE_N	PF05157.15	gi|257052512|ref|YP_003130345.1|	-	0.056	13.7	0.1	0.091	13.0	0.1	1.4	1	0	0	1	1	1	0	Type	II	secretion	system	(T2SS),	protein	E,	N-terminal	domain
ATP-synt_ab	PF00006.25	gi|257052513|ref|YP_003130346.1|	-	2.3e-92	308.4	0.0	3.1e-92	308.0	0.0	1.2	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
ATP-synt_ab_Xtn	PF16886.5	gi|257052513|ref|YP_003130346.1|	-	1.5e-38	131.4	0.1	2.5e-38	130.6	0.1	1.4	1	0	0	1	1	1	1	ATPsynthase	alpha/beta	subunit	N-term	extension
ATP-synt_ab_N	PF02874.23	gi|257052513|ref|YP_003130346.1|	-	7.4e-11	42.4	3.7	7.4e-11	42.4	3.7	2.3	2	0	0	2	2	2	1	ATP	synthase	alpha/beta	family,	beta-barrel	domain
AAA_22	PF13401.6	gi|257052513|ref|YP_003130346.1|	-	0.023	14.9	0.0	0.067	13.5	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
ATP-synt_ab	PF00006.25	gi|257052514|ref|YP_003130347.1|	-	1.2e-62	211.3	0.0	1.7e-62	210.8	0.0	1.2	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
ATP-synt_ab_N	PF02874.23	gi|257052514|ref|YP_003130347.1|	-	1.6e-14	54.2	0.8	1.6e-14	54.2	0.8	1.7	2	0	0	2	2	2	1	ATP	synthase	alpha/beta	family,	beta-barrel	domain
HAS-barrel	PF09378.10	gi|257052514|ref|YP_003130347.1|	-	0.0012	18.9	0.4	0.0038	17.3	0.4	2.0	1	0	0	1	1	1	1	HAS	barrel	domain
Styelin	PF17562.2	gi|257052514|ref|YP_003130347.1|	-	0.07	13.5	0.6	10	6.5	0.0	3.0	3	0	0	3	3	3	0	Styelin
DUF5353	PF17304.2	gi|257052515|ref|YP_003130348.1|	-	0.015	15.1	0.4	0.019	14.7	0.4	1.2	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5353)
PMT_2	PF13231.6	gi|257052515|ref|YP_003130348.1|	-	0.016	15.4	1.2	0.017	15.4	1.2	1.0	1	0	0	1	1	1	0	Dolichyl-phosphate-mannose-protein	mannosyltransferase
BCD	PF15461.6	gi|257052516|ref|YP_003130349.1|	-	1.5e-74	250.9	16.4	2.3e-74	250.3	16.4	1.2	1	0	0	1	1	1	1	Beta-carotene	15,15'-dioxygenase
ATP-synt_D	PF01813.17	gi|257052517|ref|YP_003130350.1|	-	2.6e-53	180.8	10.1	3.1e-53	180.5	10.1	1.1	1	0	0	1	1	1	1	ATP	synthase	subunit	D
DUF3187	PF11383.8	gi|257052517|ref|YP_003130350.1|	-	0.18	11.0	0.1	0.31	10.2	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3187)
DUF948	PF06103.11	gi|257052517|ref|YP_003130350.1|	-	0.86	9.9	3.3	15	6.0	0.1	2.8	2	1	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
DPM3	PF08285.11	gi|257052517|ref|YP_003130350.1|	-	1.9	8.8	4.5	19	5.5	0.1	3.0	2	1	1	3	3	3	0	Dolichol-phosphate	mannosyltransferase	subunit	3	(DPM3)
Lig_C	PF18330.1	gi|257052518|ref|YP_003130351.1|	-	5.9e-43	145.8	0.2	9.2e-43	145.2	0.2	1.3	1	0	0	1	1	1	1	Ligase	Pab1020	C-terminal	region
RNA_ligase	PF09414.10	gi|257052518|ref|YP_003130351.1|	-	2e-14	54.2	0.0	3.5e-14	53.4	0.0	1.4	1	0	0	1	1	1	1	RNA	ligase
TusA	PF01206.17	gi|257052518|ref|YP_003130351.1|	-	0.15	11.9	0.1	2	8.3	0.1	2.4	2	0	0	2	2	2	0	Sulfurtransferase	TusA
UvrD-helicase	PF00580.21	gi|257052519|ref|YP_003130352.1|	-	1.3e-25	90.6	0.0	1.9e-24	86.8	0.0	2.2	1	1	0	1	1	1	1	UvrD/REP	helicase	N-terminal	domain
AAA_19	PF13245.6	gi|257052519|ref|YP_003130352.1|	-	2.5e-22	79.8	0.0	8.4e-22	78.1	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
UvrD_C	PF13361.6	gi|257052519|ref|YP_003130352.1|	-	3.8e-15	56.1	0.1	2.1e-09	37.2	0.0	2.3	2	0	0	2	2	2	2	UvrD-like	helicase	C-terminal	domain
UvrD_C_2	PF13538.6	gi|257052519|ref|YP_003130352.1|	-	3.6e-09	36.3	0.1	0.0029	17.4	0.0	2.7	2	0	0	2	2	2	2	UvrD-like	helicase	C-terminal	domain
AAA_30	PF13604.6	gi|257052519|ref|YP_003130352.1|	-	4e-06	26.7	0.1	0.00085	19.1	0.0	2.5	2	0	0	2	2	2	1	AAA	domain
Viral_helicase1	PF01443.18	gi|257052519|ref|YP_003130352.1|	-	4.1e-05	23.4	0.1	0.82	9.4	0.1	3.6	3	1	0	3	3	3	2	Viral	(Superfamily	1)	RNA	helicase
Herpes_ori_bp	PF02399.15	gi|257052519|ref|YP_003130352.1|	-	0.0038	15.4	0.0	0.0054	14.9	0.0	1.1	1	0	0	1	1	1	1	Origin	of	replication	binding	protein
AAA_22	PF13401.6	gi|257052519|ref|YP_003130352.1|	-	0.016	15.5	0.0	0.65	10.3	0.0	2.6	2	0	0	2	2	2	0	AAA	domain
AAA_11	PF13086.6	gi|257052519|ref|YP_003130352.1|	-	0.016	15.0	0.0	0.028	14.2	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_17	PF13207.6	gi|257052519|ref|YP_003130352.1|	-	0.054	13.9	4.6	2.4	8.6	0.3	3.8	2	1	2	4	4	4	0	AAA	domain
AAA_25	PF13481.6	gi|257052519|ref|YP_003130352.1|	-	0.067	12.8	0.4	0.36	10.4	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
DUF2075	PF09848.9	gi|257052519|ref|YP_003130352.1|	-	0.07	12.4	0.0	0.6	9.3	0.0	2.3	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
DEAD	PF00270.29	gi|257052519|ref|YP_003130352.1|	-	0.17	11.6	0.1	4.6	7.0	0.0	2.5	3	0	0	3	3	3	0	DEAD/DEAH	box	helicase
DUF2157	PF09925.9	gi|257052520|ref|YP_003130353.1|	-	0.015	15.1	2.8	0.018	14.8	2.8	1.2	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2157)
CPP1-like	PF11833.8	gi|257052520|ref|YP_003130353.1|	-	0.088	12.5	1.7	0.1	12.2	1.7	1.2	1	0	0	1	1	1	0	Protein	CHAPERONE-LIKE	PROTEIN	OF	POR1-like
RNaseH_C	PF09293.10	gi|257052520|ref|YP_003130353.1|	-	0.11	12.9	0.0	0.13	12.6	0.0	1.1	1	0	0	1	1	1	0	T4	RNase	H,	C	terminal
TssN	PF17555.2	gi|257052520|ref|YP_003130353.1|	-	0.17	11.3	2.3	0.18	11.1	2.3	1.0	1	0	0	1	1	1	0	Type	VI	secretion	system,	TssN
ISK_Channel	PF02060.15	gi|257052520|ref|YP_003130353.1|	-	0.69	9.6	2.8	4.6	7.0	0.1	2.1	1	1	1	2	2	2	0	Slow	voltage-gated	potassium	channel
HTH_5	PF01022.20	gi|257052521|ref|YP_003130354.1|	-	6.1e-08	32.4	0.4	1e-07	31.7	0.4	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|257052521|ref|YP_003130354.1|	-	7.4e-08	32.3	0.4	1.2e-07	31.7	0.4	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|257052521|ref|YP_003130354.1|	-	3.2e-05	23.7	0.1	5e-05	23.1	0.1	1.2	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|257052521|ref|YP_003130354.1|	-	5.5e-05	23.0	0.2	0.0001	22.1	0.2	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|257052521|ref|YP_003130354.1|	-	0.00015	21.2	0.0	0.0003	20.3	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.10	gi|257052521|ref|YP_003130354.1|	-	0.00017	21.3	0.1	0.00027	20.7	0.1	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
FUR	PF01475.19	gi|257052521|ref|YP_003130354.1|	-	0.00017	21.7	0.1	0.0002	21.5	0.1	1.2	1	0	0	1	1	1	1	Ferric	uptake	regulator	family
HTH_11	PF08279.12	gi|257052521|ref|YP_003130354.1|	-	0.0002	21.2	0.1	0.00032	20.6	0.1	1.3	1	0	0	1	1	1	1	HTH	domain
Plk4_PB1	PF18190.1	gi|257052521|ref|YP_003130354.1|	-	0.00081	19.5	0.1	0.0014	18.8	0.1	1.3	1	1	0	1	1	1	1	Polo-like	Kinase	4	Polo	Box	1
PadR	PF03551.14	gi|257052521|ref|YP_003130354.1|	-	0.0011	18.9	0.1	0.0018	18.2	0.1	1.3	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
ArsR	PF09824.9	gi|257052521|ref|YP_003130354.1|	-	0.0017	18.0	0.0	0.0022	17.6	0.0	1.1	1	0	0	1	1	1	1	ArsR	transcriptional	regulator
Fe_dep_repress	PF01325.19	gi|257052521|ref|YP_003130354.1|	-	0.0041	17.3	0.5	0.038	14.2	0.2	2.3	2	1	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR	PF01047.22	gi|257052521|ref|YP_003130354.1|	-	0.0052	16.7	0.1	0.012	15.5	0.0	1.6	2	0	0	2	2	2	1	MarR	family
TFIIE_alpha	PF02002.17	gi|257052521|ref|YP_003130354.1|	-	0.0063	16.4	0.2	0.0077	16.1	0.2	1.2	1	0	0	1	1	1	1	TFIIE	alpha	subunit
HTH_AsnC-type	PF13404.6	gi|257052521|ref|YP_003130354.1|	-	0.014	15.2	0.1	0.025	14.4	0.1	1.4	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
DprA_WH	PF17782.1	gi|257052521|ref|YP_003130354.1|	-	0.038	14.1	0.6	0.055	13.6	0.6	1.3	1	0	0	1	1	1	0	DprA	winged	helix	domain
HTH_22	PF13309.6	gi|257052521|ref|YP_003130354.1|	-	0.072	13.2	0.0	0.13	12.3	0.0	1.4	1	0	0	1	1	1	0	HTH	domain
Urocanase	PF01175.18	gi|257052521|ref|YP_003130354.1|	-	0.16	11.6	0.0	0.18	11.5	0.0	1.0	1	0	0	1	1	1	0	Urocanase	Rossmann-like	domain
RecR	PF02132.15	gi|257052522|ref|YP_003130355.1|	-	0.032	13.8	0.9	0.045	13.3	0.9	1.2	1	0	0	1	1	1	0	RecR	protein
OrfB_Zn_ribbon	PF07282.11	gi|257052522|ref|YP_003130355.1|	-	0.098	12.6	2.6	0.19	11.7	2.6	1.6	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zf-C2H2_3	PF13878.6	gi|257052522|ref|YP_003130355.1|	-	0.28	11.1	3.6	6.1	6.7	0.5	2.3	2	0	0	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
zf-ribbon_3	PF13248.6	gi|257052522|ref|YP_003130355.1|	-	0.53	9.8	5.6	2.3	7.8	5.2	2.1	1	1	1	2	2	2	0	zinc-ribbon	domain
CRISPR_Cas2	PF09827.9	gi|257052524|ref|YP_003130357.1|	-	1.9e-16	60.0	0.1	2.2e-16	59.8	0.1	1.1	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas2
Cas_Cas2CT1978	PF09707.10	gi|257052524|ref|YP_003130357.1|	-	0.0009	19.3	0.0	0.00095	19.2	0.0	1.1	1	0	0	1	1	1	1	CRISPR-associated	protein	(Cas_Cas2CT1978)
Cas_Cas1	PF01867.16	gi|257052525|ref|YP_003130358.1|	-	5.4e-88	294.8	0.0	6.3e-88	294.6	0.0	1.0	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas1
Cas_Cas4	PF01930.17	gi|257052526|ref|YP_003130359.1|	-	6.7e-46	156.3	0.0	7.8e-46	156.1	0.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF83
PDDEXK_1	PF12705.7	gi|257052526|ref|YP_003130359.1|	-	1.3e-06	28.5	0.1	1.6e-06	28.3	0.1	1.1	1	0	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
ResIII	PF04851.15	gi|257052527|ref|YP_003130360.1|	-	4.5e-08	33.3	0.0	7.8e-08	32.5	0.0	1.4	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
HD_6	PF18019.1	gi|257052527|ref|YP_003130360.1|	-	1.7e-07	31.6	0.6	4.9e-07	30.1	0.2	1.9	2	0	0	2	2	2	1	HD	domain
DEAD	PF00270.29	gi|257052527|ref|YP_003130360.1|	-	1.1e-05	25.3	0.0	2.3e-05	24.3	0.0	1.5	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
DUF1633	PF07794.11	gi|257052527|ref|YP_003130360.1|	-	0.065	11.4	0.1	0.2	9.8	0.1	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1633)
Cas_Cas5d	PF09704.10	gi|257052528|ref|YP_003130361.1|	-	2.8e-10	40.5	0.0	3.4e-10	40.2	0.0	1.2	1	0	0	1	1	1	1	CRISPR-associated	protein	(Cas_Cas5)
Cas_Cas7	PF05107.12	gi|257052529|ref|YP_003130362.1|	-	4.4e-47	160.8	0.0	5.2e-47	160.5	0.0	1.0	1	0	0	1	1	1	1	CRISPR-associated	protein	Cas7
Cas_TM1802	PF09484.10	gi|257052530|ref|YP_003130363.1|	-	3.4e-20	72.3	0.0	4.1e-09	35.8	0.0	2.1	2	0	0	2	2	2	2	CRISPR-associated	protein	TM1802	(cas_TM1802)
zf-HC2	PF13490.6	gi|257052530|ref|YP_003130363.1|	-	9.4	6.6	10.2	0.49	10.7	0.7	3.4	3	0	0	3	3	3	0	Putative	zinc-finger
Cas_Cas6	PF01881.16	gi|257052531|ref|YP_003130364.1|	-	1.9e-21	77.2	0.0	2.5e-21	76.8	0.0	1.2	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas6
RNase_H_2	PF13482.6	gi|257052533|ref|YP_003130366.1|	-	1.3e-33	116.3	0.0	1.7e-33	115.9	0.0	1.2	1	0	0	1	1	1	1	RNase_H	superfamily
DNA_pol_A_exo1	PF01612.20	gi|257052533|ref|YP_003130366.1|	-	0.0025	17.5	0.1	0.006	16.3	0.1	1.6	1	1	0	1	1	1	1	3'-5'	exonuclease
DNA_pol_B_exo2	PF10108.9	gi|257052533|ref|YP_003130366.1|	-	0.044	13.5	0.0	0.082	12.6	0.0	1.5	1	0	0	1	1	1	0	Predicted	3'-5'	exonuclease	related	to	the	exonuclease	domain	of	PolB
RNase_T	PF00929.24	gi|257052533|ref|YP_003130366.1|	-	0.052	14.1	0.3	9.1	6.8	0.0	2.3	1	1	1	2	2	2	0	Exonuclease
HHH_2	PF12826.7	gi|257052533|ref|YP_003130366.1|	-	0.16	12.1	0.0	29	4.9	0.0	3.1	3	0	0	3	3	3	0	Helix-hairpin-helix	motif
Rhomboid	PF01694.22	gi|257052534|ref|YP_003130367.1|	-	3.6e-27	95.2	8.0	3.6e-27	95.2	8.0	1.5	2	0	0	2	2	2	1	Rhomboid	family
DUF1751	PF08551.10	gi|257052534|ref|YP_003130367.1|	-	1.9e-06	28.3	2.0	1.9e-06	28.3	2.0	2.7	2	1	0	3	3	3	1	Eukaryotic	integral	membrane	protein	(DUF1751)
YdjM	PF04307.14	gi|257052534|ref|YP_003130367.1|	-	1.5	8.1	9.8	0.074	12.3	1.2	2.4	1	1	0	2	2	2	0	LexA-binding,	inner	membrane-associated	putative	hydrolase
Zn-ribbon_8	PF09723.10	gi|257052535|ref|YP_003130368.1|	-	0.001	19.2	10.5	0.081	13.1	4.6	2.6	1	1	0	2	2	2	2	Zinc	ribbon	domain
Prok-RING_1	PF14446.6	gi|257052535|ref|YP_003130368.1|	-	0.012	15.5	3.6	0.012	15.5	3.6	2.1	1	1	1	2	2	2	0	Prokaryotic	RING	finger	family	1
Cys_rich_CWC	PF14375.6	gi|257052535|ref|YP_003130368.1|	-	0.016	15.6	3.2	0.016	15.6	3.2	2.0	2	0	0	2	2	2	0	Cysteine-rich	CWC
zf-TFIIB	PF13453.6	gi|257052535|ref|YP_003130368.1|	-	0.024	13.9	14.4	1	8.8	8.8	2.9	2	1	0	2	2	2	0	Transcription	factor	zinc-finger
DZR	PF12773.7	gi|257052535|ref|YP_003130368.1|	-	0.039	14.0	10.3	0.058	13.4	10.3	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-ribbon_3	PF13248.6	gi|257052535|ref|YP_003130368.1|	-	0.049	13.0	14.0	1.2	8.6	8.3	2.4	2	1	0	2	2	2	0	zinc-ribbon	domain
Metallothio_5	PF02067.15	gi|257052535|ref|YP_003130368.1|	-	0.052	13.7	14.9	0.2	11.8	9.7	2.1	2	0	0	2	2	2	0	Metallothionein	family	5
Opy2	PF09463.10	gi|257052535|ref|YP_003130368.1|	-	0.097	13.0	13.2	0.14	12.5	8.4	2.1	2	0	0	2	2	2	0	Opy2	protein
UPF0547	PF10571.9	gi|257052535|ref|YP_003130368.1|	-	0.17	12.0	12.1	5.3	7.2	8.1	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
DUF2116	PF09889.9	gi|257052535|ref|YP_003130368.1|	-	0.32	11.0	6.2	0.83	9.7	3.0	2.0	1	1	1	2	2	2	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
zf-Mss51	PF13824.6	gi|257052535|ref|YP_003130368.1|	-	0.36	11.0	9.4	1.5	9.0	9.3	2.1	1	1	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
HypA	PF01155.19	gi|257052535|ref|YP_003130368.1|	-	0.41	10.7	8.3	0.52	10.4	6.2	1.9	1	1	1	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf_UBZ	PF18439.1	gi|257052535|ref|YP_003130368.1|	-	1	9.0	12.0	1.9	8.2	2.7	3.1	1	1	2	3	3	3	0	Ubiquitin-Binding	Zinc	Finger
zf-CXXC	PF02008.20	gi|257052535|ref|YP_003130368.1|	-	1.3	9.1	10.9	0.083	12.9	5.8	1.7	2	0	0	2	2	2	0	CXXC	zinc	finger	domain
A2L_zn_ribbon	PF08792.10	gi|257052535|ref|YP_003130368.1|	-	2.1	8.2	0.0	2.1	8.2	0.0	3.2	3	0	0	3	3	3	0	A2L	zinc	ribbon	domain
zinc_ribbon_2	PF13240.6	gi|257052535|ref|YP_003130368.1|	-	2.5	8.0	14.4	1.1	9.1	7.8	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-C2H2_4	PF13894.6	gi|257052535|ref|YP_003130368.1|	-	2.7	9.0	9.5	18	6.5	2.0	3.2	1	1	2	3	3	3	0	C2H2-type	zinc	finger
YacG	PF03884.14	gi|257052535|ref|YP_003130368.1|	-	8.1	6.3	10.8	2.1	8.1	0.2	2.6	1	1	2	3	3	3	0	DNA	gyrase	inhibitor	YacG
FeoB_N	PF02421.18	gi|257052536|ref|YP_003130369.1|	-	4.6e-50	169.2	0.1	6.5e-50	168.7	0.1	1.2	1	0	0	1	1	1	1	Ferrous	iron	transport	protein	B
Gate	PF07670.14	gi|257052536|ref|YP_003130369.1|	-	7.3e-17	61.7	12.3	1.7e-11	44.4	3.4	2.6	2	0	0	2	2	2	2	Nucleoside	recognition
MMR_HSR1	PF01926.23	gi|257052536|ref|YP_003130369.1|	-	8.8e-16	58.0	0.0	1.7e-15	57.1	0.0	1.5	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
FeoB_C	PF07664.12	gi|257052536|ref|YP_003130369.1|	-	8.3e-10	38.2	0.0	8.3e-10	38.2	0.0	4.0	4	1	1	5	5	5	1	Ferrous	iron	transport	protein	B	C	terminus
AAA_22	PF13401.6	gi|257052536|ref|YP_003130369.1|	-	0.026	14.8	0.0	0.31	11.3	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
GTP_EFTU	PF00009.27	gi|257052536|ref|YP_003130369.1|	-	0.16	11.5	0.2	0.38	10.2	0.2	1.5	1	1	0	1	1	1	0	Elongation	factor	Tu	GTP	binding	domain
FeoA	PF04023.14	gi|257052537|ref|YP_003130370.1|	-	7.9e-10	38.9	0.5	1e-09	38.5	0.5	1.1	1	0	0	1	1	1	1	FeoA	domain
DUF123	PF01986.16	gi|257052538|ref|YP_003130371.1|	-	2.8e-29	101.5	0.0	4.6e-29	100.8	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF123
TMP-TENI	PF02581.17	gi|257052539|ref|YP_003130372.1|	-	1.4e-62	210.2	2.7	1.6e-62	210.1	2.7	1.0	1	0	0	1	1	1	1	Thiamine	monophosphate	synthase
NMO	PF03060.15	gi|257052539|ref|YP_003130372.1|	-	6.5e-08	32.3	5.4	8e-08	32.0	5.4	1.1	1	0	0	1	1	1	1	Nitronate	monooxygenase
ThiG	PF05690.14	gi|257052539|ref|YP_003130372.1|	-	0.0026	17.1	3.9	0.0045	16.3	3.5	1.6	2	0	0	2	2	2	1	Thiazole	biosynthesis	protein	ThiG
Sacchrp_dh_NADP	PF03435.18	gi|257052539|ref|YP_003130372.1|	-	0.019	15.2	0.0	0.19	12.0	0.0	2.1	2	0	0	2	2	2	0	Saccharopine	dehydrogenase	NADP	binding	domain
DUF561	PF04481.12	gi|257052539|ref|YP_003130372.1|	-	0.048	12.8	0.7	0.12	11.5	0.4	1.7	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF561)
DHO_dh	PF01180.21	gi|257052539|ref|YP_003130372.1|	-	0.14	11.3	5.7	0.1	11.8	2.6	1.9	2	0	0	2	2	2	0	Dihydroorotate	dehydrogenase
PAS_4	PF08448.10	gi|257052540|ref|YP_003130373.1|	-	3.2e-42	143.3	9.2	2.8e-20	72.6	0.4	3.8	4	0	0	4	4	4	3	PAS	fold
PAS_9	PF13426.7	gi|257052540|ref|YP_003130373.1|	-	1.4e-41	140.9	0.2	8.7e-16	58.1	0.0	3.5	3	0	0	3	3	3	3	PAS	domain
PAS	PF00989.25	gi|257052540|ref|YP_003130373.1|	-	6.7e-38	129.2	1.2	1e-14	54.5	0.0	4.2	4	0	0	4	4	4	3	PAS	fold
PAS_8	PF13188.7	gi|257052540|ref|YP_003130373.1|	-	1.2e-32	111.4	0.9	4.1e-14	52.2	0.0	3.9	3	0	0	3	3	3	3	PAS	domain
PAS_3	PF08447.12	gi|257052540|ref|YP_003130373.1|	-	1.1e-13	51.3	0.0	1.4e-05	25.3	0.0	3.5	3	0	0	3	3	3	3	PAS	fold
HATPase_c	PF02518.26	gi|257052540|ref|YP_003130373.1|	-	1.4e-13	51.3	0.1	4e-13	49.9	0.1	1.8	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_7	PF12860.7	gi|257052540|ref|YP_003130373.1|	-	4.2e-08	33.3	0.7	0.011	15.9	0.0	4.7	4	2	1	5	5	5	2	PAS	fold
HATPase_c_2	PF13581.6	gi|257052540|ref|YP_003130373.1|	-	6.5e-08	32.6	0.0	2.6e-07	30.6	0.0	2.1	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
PAS_10	PF13596.6	gi|257052540|ref|YP_003130373.1|	-	2.8e-06	27.8	0.0	5.1e-05	23.8	0.0	2.8	2	1	0	2	2	2	1	PAS	domain
HisKA	PF00512.25	gi|257052540|ref|YP_003130373.1|	-	5.3e-05	23.2	1.9	0.0011	18.9	0.2	2.9	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_3	PF13589.6	gi|257052540|ref|YP_003130373.1|	-	0.00032	20.6	0.1	0.00063	19.6	0.1	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PHA-1	PF06542.11	gi|257052540|ref|YP_003130373.1|	-	0.2	10.5	0.0	0.33	9.7	0.0	1.3	1	0	0	1	1	1	0	Regulator	protein	PHA-1
E1-E2_ATPase	PF00122.20	gi|257052541|ref|YP_003130374.1|	-	1e-51	175.0	0.4	1e-51	175.0	0.4	2.0	2	0	0	2	2	2	1	E1-E2	ATPase
Hydrolase	PF00702.26	gi|257052541|ref|YP_003130374.1|	-	5.5e-39	134.6	6.6	5.5e-39	134.6	6.6	2.1	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.26	gi|257052541|ref|YP_003130374.1|	-	1.5e-15	57.3	0.9	3.3e-15	56.3	0.0	2.1	3	0	0	3	3	3	1	Heavy-metal-associated	domain
AP_endonuc_2	PF01261.24	gi|257052541|ref|YP_003130374.1|	-	0.0021	17.5	0.2	0.0051	16.3	0.2	1.6	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
Hydrolase_3	PF08282.12	gi|257052541|ref|YP_003130374.1|	-	0.005	16.6	0.5	0.011	15.5	0.5	1.5	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|257052541|ref|YP_003130374.1|	-	0.011	16.1	0.7	0.052	14.0	0.6	2.2	1	1	0	1	1	1	0	haloacid	dehalogenase-like	hydrolase
TAT_signal	PF10518.9	gi|257052542|ref|YP_003130375.1|	-	0.016	15.0	1.4	0.035	14.0	1.4	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
HTH_10	PF04967.12	gi|257052543|ref|YP_003130376.1|	-	1e-15	57.3	0.1	1.8e-15	56.5	0.1	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_30	PF13556.6	gi|257052543|ref|YP_003130376.1|	-	4.7e-05	23.1	0.1	0.00011	21.9	0.1	1.6	1	0	0	1	1	1	1	PucR	C-terminal	helix-turn-helix	domain
MarR_2	PF12802.7	gi|257052543|ref|YP_003130376.1|	-	0.0001	22.1	0.1	0.00024	20.9	0.1	1.6	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|257052543|ref|YP_003130376.1|	-	0.0022	17.5	0.0	0.0037	16.8	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_8	PF02954.19	gi|257052543|ref|YP_003130376.1|	-	0.004	16.9	0.0	0.0085	15.9	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	Fis	family
HTH_psq	PF05225.16	gi|257052543|ref|YP_003130376.1|	-	0.026	14.3	2.0	0.052	13.3	0.2	2.4	2	1	0	2	2	2	0	helix-turn-helix,	Psq	domain
Sigma70_r4_2	PF08281.12	gi|257052543|ref|YP_003130376.1|	-	0.16	11.7	0.0	0.38	10.5	0.0	1.6	2	0	0	2	2	2	0	Sigma-70,	region	4
PEPcase	PF00311.17	gi|257052544|ref|YP_003130377.1|	-	1.9e-232	773.8	0.0	2.5e-232	773.4	0.0	1.2	1	0	0	1	1	1	1	Phosphoenolpyruvate	carboxylase
PEPcase_2	PF14010.6	gi|257052544|ref|YP_003130377.1|	-	0.013	14.0	0.0	0.031	12.8	0.0	1.6	1	0	0	1	1	1	0	Phosphoenolpyruvate	carboxylase
Activator-TraM	PF11657.8	gi|257052544|ref|YP_003130377.1|	-	0.14	12.0	0.0	0.5	10.2	0.0	1.9	1	0	0	1	1	1	0	Transcriptional	activator	TraM
CCG	PF02754.16	gi|257052545|ref|YP_003130378.1|	-	2.9e-22	78.7	5.5	1.2e-10	41.4	0.3	3.2	3	0	0	3	3	3	2	Cysteine-rich	domain
Fer4_17	PF13534.6	gi|257052545|ref|YP_003130378.1|	-	5.3e-08	33.3	1.7	5.3e-08	33.3	1.7	3.4	3	0	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|257052545|ref|YP_003130378.1|	-	2.6e-07	31.0	2.8	2.6e-07	31.0	2.8	3.1	3	0	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|257052545|ref|YP_003130378.1|	-	0.0022	18.5	11.8	0.069	13.7	0.2	3.5	4	0	0	4	4	4	2	4Fe-4S	dicluster	domain
zf-CSL	PF05207.13	gi|257052545|ref|YP_003130378.1|	-	0.0082	15.9	10.9	0.011	15.4	0.1	3.6	4	0	0	4	4	4	2	CSL	zinc	finger
Fer4_10	PF13237.6	gi|257052545|ref|YP_003130378.1|	-	0.016	15.3	12.1	0.32	11.1	9.5	3.4	2	1	2	4	4	4	0	4Fe-4S	dicluster	domain
DUF3390	PF11870.8	gi|257052545|ref|YP_003130378.1|	-	0.027	14.8	0.4	0.058	13.8	0.4	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3390)
CxC7	PF18866.1	gi|257052545|ref|YP_003130378.1|	-	0.87	9.8	3.8	5.8	7.1	0.1	3.0	3	0	0	3	3	3	0	CxC7	like	cysteine	cluster	associated	with	KDZ	transposases
RecR	PF02132.15	gi|257052545|ref|YP_003130378.1|	-	1.3	8.7	6.1	2.8	7.6	0.1	3.3	3	0	0	3	3	3	0	RecR	protein
Fer4_9	PF13187.6	gi|257052545|ref|YP_003130378.1|	-	1.8	8.8	15.1	0.29	11.3	7.7	3.3	3	1	1	4	4	4	0	4Fe-4S	dicluster	domain
FAD_binding_2	PF00890.24	gi|257052546|ref|YP_003130379.1|	-	3.2e-33	115.4	6.0	3.8e-33	115.2	6.0	1.0	1	0	0	1	1	1	1	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|257052546|ref|YP_003130379.1|	-	1.6e-07	30.9	0.1	1.1e-06	28.1	0.1	2.0	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.24	gi|257052546|ref|YP_003130379.1|	-	2.9e-06	27.1	5.8	1e-05	25.3	5.7	2.0	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_oxidored	PF12831.7	gi|257052546|ref|YP_003130379.1|	-	1.9e-05	24.2	2.8	3.7e-05	23.3	2.8	1.5	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
GIDA	PF01134.22	gi|257052546|ref|YP_003130379.1|	-	2.1e-05	23.8	0.2	2.1e-05	23.8	0.2	1.6	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
FAD_binding_3	PF01494.19	gi|257052546|ref|YP_003130379.1|	-	0.00014	21.2	0.5	0.0002	20.7	0.5	1.2	1	0	0	1	1	1	1	FAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|257052546|ref|YP_003130379.1|	-	0.00026	20.4	0.8	0.00046	19.5	0.8	1.3	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
NAD_binding_8	PF13450.6	gi|257052546|ref|YP_003130379.1|	-	0.00035	20.7	1.0	0.0015	18.7	1.0	2.1	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
HI0933_like	PF03486.14	gi|257052546|ref|YP_003130379.1|	-	0.0023	16.7	0.2	0.0037	16.0	0.2	1.3	1	0	0	1	1	1	1	HI0933-like	protein
Pyr_redox	PF00070.27	gi|257052546|ref|YP_003130379.1|	-	0.0053	17.3	0.3	0.011	16.3	0.3	1.5	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_7	PF13241.6	gi|257052546|ref|YP_003130379.1|	-	0.011	16.1	0.0	0.023	15.1	0.0	1.4	1	0	0	1	1	1	0	Putative	NAD(P)-binding
Lycopene_cycl	PF05834.12	gi|257052546|ref|YP_003130379.1|	-	0.076	12.0	0.4	0.12	11.4	0.4	1.2	1	0	0	1	1	1	0	Lycopene	cyclase	protein
Pyr_redox_3	PF13738.6	gi|257052546|ref|YP_003130379.1|	-	0.12	11.6	0.2	0.21	10.8	0.2	1.3	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.18	gi|257052546|ref|YP_003130379.1|	-	0.26	11.1	0.3	0.4	10.5	0.3	1.2	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
DAO	PF01266.24	gi|257052547|ref|YP_003130380.1|	-	4.5e-48	164.6	1.1	6.5e-48	164.1	1.1	1.2	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Fer2_BFD	PF04324.15	gi|257052547|ref|YP_003130380.1|	-	1.3e-11	44.6	1.5	3.6e-11	43.2	1.5	1.8	1	0	0	1	1	1	1	BFD-like	[2Fe-2S]	binding	domain
Pyr_redox_2	PF07992.14	gi|257052547|ref|YP_003130380.1|	-	2.4e-06	27.0	0.2	8.9e-06	25.1	0.2	1.8	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|257052547|ref|YP_003130380.1|	-	6.9e-06	25.4	5.3	0.0001	21.5	5.3	2.2	1	1	0	1	1	1	1	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|257052547|ref|YP_003130380.1|	-	0.0012	19.0	0.5	0.02	15.1	0.8	2.5	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_3	PF01494.19	gi|257052547|ref|YP_003130380.1|	-	0.0034	16.7	0.8	0.045	13.0	0.1	2.1	2	0	0	2	2	2	1	FAD	binding	domain
DAO_C	PF16901.5	gi|257052547|ref|YP_003130380.1|	-	0.0049	16.7	0.0	0.016	15.1	0.0	1.9	2	0	0	2	2	2	1	C-terminal	domain	of	alpha-glycerophosphate	oxidase
3HCDH_N	PF02737.18	gi|257052547|ref|YP_003130380.1|	-	0.014	15.3	0.3	0.026	14.4	0.3	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
FAD_oxidored	PF12831.7	gi|257052547|ref|YP_003130380.1|	-	0.021	14.2	2.4	0.028	13.8	0.3	2.0	2	0	0	2	2	2	0	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.6	gi|257052547|ref|YP_003130380.1|	-	0.022	14.0	0.2	0.036	13.3	0.2	1.3	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|257052547|ref|YP_003130380.1|	-	0.022	13.5	0.2	0.036	12.8	0.2	1.3	1	0	0	1	1	1	0	HI0933-like	protein
Pyr_redox	PF00070.27	gi|257052547|ref|YP_003130380.1|	-	0.075	13.6	0.7	0.22	12.1	0.7	1.8	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|257052547|ref|YP_003130380.1|	-	0.19	10.8	0.9	0.4	9.7	0.9	1.5	1	0	0	1	1	1	0	Glucose	inhibited	division	protein	A
FGGY_N	PF00370.21	gi|257052548|ref|YP_003130381.1|	-	5.8e-71	238.9	0.0	7.6e-71	238.5	0.0	1.1	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	N-terminal	domain
FGGY_C	PF02782.16	gi|257052548|ref|YP_003130381.1|	-	2.4e-59	200.4	1.2	4.2e-59	199.6	1.2	1.4	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	C-terminal	domain
BcrAD_BadFG	PF01869.20	gi|257052548|ref|YP_003130381.1|	-	0.001	18.7	0.4	0.022	14.3	0.0	2.2	2	0	0	2	2	2	1	BadF/BadG/BcrA/BcrD	ATPase	family
Bacillus_PapR	PF05968.11	gi|257052549|ref|YP_003130382.1|	-	0.4	10.6	0.1	0.4	10.6	0.1	2.8	2	0	0	2	2	2	0	Bacillus	PapR	protein
ROK	PF00480.20	gi|257052550|ref|YP_003130383.1|	-	6.9e-43	147.2	0.1	7.9e-43	147.0	0.1	1.0	1	0	0	1	1	1	1	ROK	family
FGGY_N	PF00370.21	gi|257052550|ref|YP_003130383.1|	-	0.0042	16.7	0.0	0.018	14.6	0.0	1.8	1	1	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	N-terminal	domain
BcrAD_BadFG	PF01869.20	gi|257052550|ref|YP_003130383.1|	-	0.0089	15.5	0.4	0.0089	15.5	0.4	1.5	2	0	0	2	2	2	1	BadF/BadG/BcrA/BcrD	ATPase	family
PK	PF00224.21	gi|257052551|ref|YP_003130384.1|	-	6e-112	374.0	1.9	9.3e-112	373.4	1.9	1.2	1	0	0	1	1	1	1	Pyruvate	kinase,	barrel	domain
PK_C	PF02887.16	gi|257052551|ref|YP_003130384.1|	-	5.4e-30	104.0	1.0	1.2e-29	102.9	1.0	1.6	1	0	0	1	1	1	1	Pyruvate	kinase,	alpha/beta	domain
PEP-utilizers	PF00391.23	gi|257052551|ref|YP_003130384.1|	-	9.2e-08	31.7	0.3	4.1e-07	29.6	0.1	2.3	2	0	0	2	2	2	1	PEP-utilising	enzyme,	mobile	domain
IF2_N	PF04760.15	gi|257052551|ref|YP_003130384.1|	-	0.082	12.7	0.0	0.56	10.1	0.0	2.3	2	0	0	2	2	2	0	Translation	initiation	factor	IF-2,	N-terminal	region
Glyoxalase	PF00903.25	gi|257052552|ref|YP_003130385.1|	-	4.9e-16	59.1	0.1	7.7e-16	58.5	0.1	1.3	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_2	PF12681.7	gi|257052552|ref|YP_003130385.1|	-	1.6e-11	44.1	0.0	2.3e-11	43.7	0.0	1.2	1	0	0	1	1	1	1	Glyoxalase-like	domain
Glyoxalase_6	PF18029.1	gi|257052552|ref|YP_003130385.1|	-	2.7e-08	34.5	1.7	3.6e-08	34.2	0.9	1.6	2	0	0	2	2	2	1	Glyoxalase-like	domain
PBP	PF01161.20	gi|257052552|ref|YP_003130385.1|	-	2.8e-06	27.7	0.0	5.5e-06	26.7	0.0	1.5	1	0	0	1	1	1	1	Phosphatidylethanolamine-binding	protein
Glyoxalase_4	PF13669.6	gi|257052552|ref|YP_003130385.1|	-	0.03	14.6	0.2	0.31	11.3	0.2	2.3	1	1	0	1	1	1	0	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyco_hydro_10	PF00331.20	gi|257052553|ref|YP_003130386.1|	-	9.5e-95	317.4	0.0	1.1e-94	317.2	0.0	1.0	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	10
Cellulase	PF00150.18	gi|257052553|ref|YP_003130386.1|	-	0.01	15.3	0.1	1.4	8.2	0.0	2.2	2	0	0	2	2	2	0	Cellulase	(glycosyl	hydrolase	family	5)
HAD_2	PF13419.6	gi|257052554|ref|YP_003130387.1|	-	3.9e-14	53.1	0.0	2e-13	50.8	0.0	1.9	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|257052554|ref|YP_003130387.1|	-	7.9e-11	42.6	0.0	2.7e-09	37.6	0.0	2.1	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|257052554|ref|YP_003130387.1|	-	2.2e-09	37.2	0.2	5.1e-09	36.1	0.2	1.6	1	0	0	1	1	1	1	HAD-hyrolase-like
POR	PF01558.18	gi|257052555|ref|YP_003130388.1|	-	5.2e-40	137.4	0.2	6.1e-40	137.2	0.2	1.0	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
Fer4	PF00037.27	gi|257052556|ref|YP_003130389.1|	-	1.5e-14	53.1	16.7	6e-09	35.3	4.8	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|257052556|ref|YP_003130389.1|	-	9.5e-13	48.1	8.8	1.3e-12	47.7	8.8	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|257052556|ref|YP_003130389.1|	-	6.4e-11	42.7	20.3	2.7e-08	34.3	10.7	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|257052556|ref|YP_003130389.1|	-	3.1e-10	39.5	11.8	6.2e-05	22.9	1.5	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|257052556|ref|YP_003130389.1|	-	4.8e-10	39.4	20.6	9.4e-08	32.1	10.4	1.7	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|257052556|ref|YP_003130389.1|	-	1.7e-09	37.7	22.5	4.6e-07	29.9	13.3	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|257052556|ref|YP_003130389.1|	-	3.2e-09	36.5	16.6	1.1e-05	25.2	4.0	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|257052556|ref|YP_003130389.1|	-	1.8e-07	31.6	3.5	0.0017	18.8	0.2	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|257052556|ref|YP_003130389.1|	-	2.7e-07	31.4	9.3	0.00046	21.1	1.7	2.4	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_22	PF17179.4	gi|257052556|ref|YP_003130389.1|	-	2.5e-06	28.2	4.0	0.015	16.2	0.2	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|257052556|ref|YP_003130389.1|	-	1.8e-05	25.1	10.8	0.0054	17.1	1.5	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|257052556|ref|YP_003130389.1|	-	3.7e-05	23.9	14.6	0.024	15.1	3.9	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_13	PF13370.6	gi|257052556|ref|YP_003130389.1|	-	0.0003	21.3	13.5	0.0052	17.3	4.3	2.4	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
TSCPD	PF12637.7	gi|257052556|ref|YP_003130389.1|	-	0.0061	16.8	0.1	0.0098	16.1	0.1	1.4	1	0	0	1	1	1	1	TSCPD	domain
Fer4_3	PF12798.7	gi|257052556|ref|YP_003130389.1|	-	0.0073	17.2	16.7	0.013	16.4	5.0	2.3	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_15	PF13459.6	gi|257052556|ref|YP_003130389.1|	-	0.039	14.7	15.3	0.21	12.3	1.8	3.1	2	1	1	3	3	3	0	4Fe-4S	single	cluster	domain
Fer4_18	PF13746.6	gi|257052556|ref|YP_003130389.1|	-	0.97	9.6	10.8	2.2	8.5	1.4	2.1	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
POR_N	PF01855.19	gi|257052557|ref|YP_003130390.1|	-	3.8e-68	229.7	0.6	5.1e-68	229.3	0.6	1.1	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
PFOR_II	PF17147.4	gi|257052557|ref|YP_003130390.1|	-	5.4e-26	90.9	0.0	1.1e-25	89.9	0.0	1.5	1	0	0	1	1	1	1	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
Transketolase_C	PF02780.20	gi|257052557|ref|YP_003130390.1|	-	0.00013	21.8	0.0	0.00031	20.6	0.0	1.7	1	0	0	1	1	1	1	Transketolase,	C-terminal	domain
TPP_enzyme_C	PF02775.21	gi|257052558|ref|YP_003130391.1|	-	5.9e-28	97.6	0.1	8.7e-28	97.0	0.1	1.2	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
DXP_synthase_N	PF13292.6	gi|257052558|ref|YP_003130391.1|	-	0.23	10.6	0.5	0.6	9.3	0.3	1.6	1	1	1	2	2	2	0	1-deoxy-D-xylulose-5-phosphate	synthase
MCPsignal	PF00015.21	gi|257052559|ref|YP_003130392.1|	-	2.8e-40	137.9	39.5	1e-37	129.6	20.7	3.2	1	1	1	2	2	2	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
DUF948	PF06103.11	gi|257052559|ref|YP_003130392.1|	-	1.2e-09	38.3	30.3	0.015	15.5	4.7	6.6	3	3	4	7	7	7	4	Bacterial	protein	of	unknown	function	(DUF948)
DUF1664	PF07889.12	gi|257052559|ref|YP_003130392.1|	-	7.7e-06	26.0	30.4	0.052	13.6	2.5	5.2	2	1	3	6	6	6	3	Protein	of	unknown	function	(DUF1664)
ApoLp-III	PF07464.11	gi|257052559|ref|YP_003130392.1|	-	1.5e-05	25.1	25.6	0.0034	17.5	8.0	3.6	2	1	1	3	3	3	2	Apolipophorin-III	precursor	(apoLp-III)
DUF3450	PF11932.8	gi|257052559|ref|YP_003130392.1|	-	0.00039	19.8	30.6	0.0023	17.3	0.1	4.7	2	1	3	5	5	5	2	Protein	of	unknown	function	(DUF3450)
Golgin_A5	PF09787.9	gi|257052559|ref|YP_003130392.1|	-	0.00048	19.7	10.2	0.00048	19.7	10.2	3.3	2	1	1	3	3	3	1	Golgin	subfamily	A	member	5
Laminin_II	PF06009.12	gi|257052559|ref|YP_003130392.1|	-	0.00054	20.0	31.2	0.0069	16.4	5.4	5.0	3	2	3	6	6	6	1	Laminin	Domain	II
DHR10	PF18595.1	gi|257052559|ref|YP_003130392.1|	-	0.00062	19.8	0.2	0.00062	19.8	0.2	4.8	2	1	1	4	4	4	1	Designed	helical	repeat	protein	10	domain
Mce4_CUP1	PF11887.8	gi|257052559|ref|YP_003130392.1|	-	0.0008	18.9	1.3	0.0008	18.9	1.3	3.2	3	1	0	3	3	3	1	Cholesterol	uptake	porter	CUP1	of	Mce4,	putative
Fib_alpha	PF08702.10	gi|257052559|ref|YP_003130392.1|	-	0.00097	19.3	20.7	0.029	14.6	1.1	4.7	2	1	3	5	5	5	2	Fibrinogen	alpha/beta	chain	family
DUF4795	PF16043.5	gi|257052559|ref|YP_003130392.1|	-	0.0033	17.0	18.1	1.6	8.3	0.0	3.6	2	1	1	3	3	3	1	Domain	of	unknown	function	(DUF4795)
TRPM_tetra	PF16519.5	gi|257052559|ref|YP_003130392.1|	-	0.0054	16.8	11.6	0.0064	16.6	1.5	3.5	3	0	0	3	3	2	1	Tetramerisation	domain	of	TRPM
TPR_MLP1_2	PF07926.12	gi|257052559|ref|YP_003130392.1|	-	0.0055	16.8	31.6	0.054	13.5	0.4	4.0	3	1	0	3	3	3	2	TPR/MLP1/MLP2-like	protein
RmuC	PF02646.16	gi|257052559|ref|YP_003130392.1|	-	0.012	14.7	18.5	0.44	9.6	0.5	4.6	3	2	1	4	4	4	0	RmuC	family
Filament	PF00038.21	gi|257052559|ref|YP_003130392.1|	-	0.016	14.9	28.7	0.039	13.5	0.1	3.6	2	1	2	5	5	5	0	Intermediate	filament	protein
IFT57	PF10498.9	gi|257052559|ref|YP_003130392.1|	-	0.018	14.0	24.1	0.059	12.3	6.1	3.4	3	1	1	4	4	4	0	Intra-flagellar	transport	protein	57
Syntaxin-6_N	PF09177.11	gi|257052559|ref|YP_003130392.1|	-	0.02	15.4	20.6	1	9.9	3.4	4.5	3	1	1	4	4	4	0	Syntaxin	6,	N-terminal
DUF812	PF05667.11	gi|257052559|ref|YP_003130392.1|	-	0.02	13.8	32.0	0.074	11.9	9.6	3.2	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF812)
CENP-F_leu_zip	PF10473.9	gi|257052559|ref|YP_003130392.1|	-	0.021	14.8	0.2	0.021	14.8	0.2	4.2	2	1	1	4	4	4	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
ANAPC4	PF12896.7	gi|257052559|ref|YP_003130392.1|	-	0.026	14.0	1.6	0.97	8.9	0.3	2.6	2	0	0	2	2	2	0	Anaphase-promoting	complex,	cyclosome,	subunit	4
Spc7	PF08317.11	gi|257052559|ref|YP_003130392.1|	-	0.026	13.4	29.8	0.27	10.1	0.1	3.6	2	1	2	4	4	4	0	Spc7	kinetochore	protein
UPF0242	PF06785.11	gi|257052559|ref|YP_003130392.1|	-	0.027	14.6	18.7	2.5	8.1	0.0	3.5	2	1	1	3	3	3	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
BLOC1_2	PF10046.9	gi|257052559|ref|YP_003130392.1|	-	0.032	14.5	24.2	0.19	12.1	0.5	5.5	4	2	1	5	5	5	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
LOH1CR12	PF10158.9	gi|257052559|ref|YP_003130392.1|	-	0.037	14.1	6.4	3.2	7.8	0.3	3.2	2	1	1	3	3	3	0	Tumour	suppressor	protein
HAMP	PF00672.25	gi|257052559|ref|YP_003130392.1|	-	0.042	14.2	2.8	1.4	9.3	0.1	4.4	3	1	0	3	3	2	0	HAMP	domain
NPV_P10	PF05531.12	gi|257052559|ref|YP_003130392.1|	-	0.047	14.2	26.5	2.5	8.6	2.7	5.5	4	1	1	5	5	5	0	Nucleopolyhedrovirus	P10	protein
DUF3150	PF11348.8	gi|257052559|ref|YP_003130392.1|	-	0.055	12.7	9.1	0.0099	15.1	2.8	2.3	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3150)
SlyX	PF04102.12	gi|257052559|ref|YP_003130392.1|	-	0.066	13.8	1.1	0.066	13.8	1.1	5.2	4	2	1	5	5	4	0	SlyX
Prefoldin_2	PF01920.20	gi|257052559|ref|YP_003130392.1|	-	0.076	13.0	23.5	0.13	12.2	0.6	4.5	3	2	1	4	4	4	0	Prefoldin	subunit
APG6_N	PF17675.1	gi|257052559|ref|YP_003130392.1|	-	0.077	13.5	0.6	0.077	13.5	0.6	3.7	3	1	1	4	4	4	0	Apg6	coiled-coil	region
TMPIT	PF07851.13	gi|257052559|ref|YP_003130392.1|	-	0.099	11.9	14.1	3.7	6.7	0.3	3.8	2	1	1	4	4	4	0	TMPIT-like	protein
Atg14	PF10186.9	gi|257052559|ref|YP_003130392.1|	-	0.099	11.7	14.8	0.44	9.6	0.2	3.2	2	1	0	3	3	3	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
COMP	PF11598.8	gi|257052559|ref|YP_003130392.1|	-	0.099	13.1	2.1	1.4	9.4	0.9	2.8	2	0	0	2	2	2	0	Cartilage	oligomeric	matrix	protein
Sec34	PF04136.15	gi|257052559|ref|YP_003130392.1|	-	0.1	12.5	18.8	0.58	10.0	0.5	4.9	2	1	4	6	6	6	0	Sec34-like	family
YabA	PF06156.13	gi|257052559|ref|YP_003130392.1|	-	0.18	12.5	14.8	19	5.9	0.0	4.9	2	1	2	4	4	4	0	Initiation	control	protein	YabA
BAR_3	PF16746.5	gi|257052559|ref|YP_003130392.1|	-	0.25	11.0	14.7	0.11	12.2	2.0	3.5	3	1	0	3	3	2	0	BAR	domain	of	APPL	family
SHE3	PF17078.5	gi|257052559|ref|YP_003130392.1|	-	0.41	10.3	14.7	3.7	7.2	0.0	4.1	2	1	2	4	4	4	0	SWI5-dependent	HO	expression	protein	3
Cep57_CLD_2	PF14197.6	gi|257052559|ref|YP_003130392.1|	-	0.54	10.4	8.6	0.063	13.4	2.8	2.5	3	0	0	3	3	1	0	Centrosome	localisation	domain	of	PPC89
Med30	PF11315.8	gi|257052559|ref|YP_003130392.1|	-	0.86	9.8	10.8	6.1	7.0	1.3	3.2	1	1	2	3	3	3	0	Mediator	complex	subunit	30
FliD_N	PF02465.18	gi|257052559|ref|YP_003130392.1|	-	0.9	10.3	22.7	4.5	8.0	0.0	5.2	2	1	3	5	5	5	0	Flagellar	hook-associated	protein	2	N-terminus
DivIC	PF04977.15	gi|257052559|ref|YP_003130392.1|	-	0.93	9.3	0.0	0.93	9.3	0.0	5.4	4	2	2	7	7	6	0	Septum	formation	initiator
ISG65-75	PF11727.8	gi|257052559|ref|YP_003130392.1|	-	0.98	8.6	31.9	3.5	6.8	2.7	4.0	2	1	2	4	4	4	0	Invariant	surface	glycoprotein
Seryl_tRNA_N	PF02403.22	gi|257052559|ref|YP_003130392.1|	-	1.1	9.5	26.2	5.2	7.4	3.8	5.4	3	2	2	5	5	5	0	Seryl-tRNA	synthetase	N-terminal	domain
Tup_N	PF08581.10	gi|257052559|ref|YP_003130392.1|	-	1.1	9.6	10.4	1.6	9.1	0.4	4.0	3	1	0	3	3	3	0	Tup	N-terminal
Ferritin	PF00210.24	gi|257052559|ref|YP_003130392.1|	-	1.2	9.1	16.3	0.076	13.0	2.4	3.3	1	1	1	3	3	3	0	Ferritin-like	domain
ERM	PF00769.19	gi|257052559|ref|YP_003130392.1|	-	1.2	8.9	33.7	0.3	10.9	0.2	3.2	2	1	1	3	3	3	0	Ezrin/radixin/moesin	family
DASH_Dad2	PF08654.10	gi|257052559|ref|YP_003130392.1|	-	1.2	9.6	22.3	2.1	8.8	5.9	3.7	1	1	2	3	3	3	0	DASH	complex	subunit	Dad2
COG2	PF06148.11	gi|257052559|ref|YP_003130392.1|	-	1.5	8.9	22.9	9.9	6.3	4.3	5.1	2	1	4	6	6	6	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
STAT_alpha	PF01017.20	gi|257052559|ref|YP_003130392.1|	-	1.6	8.6	13.4	45	3.9	0.4	4.1	2	1	1	3	3	3	0	STAT	protein,	all-alpha	domain
Prominin	PF05478.11	gi|257052559|ref|YP_003130392.1|	-	1.6	6.6	15.6	2.8	5.8	9.8	2.5	2	1	0	2	2	2	0	Prominin
Not3	PF04065.15	gi|257052559|ref|YP_003130392.1|	-	1.7	8.0	24.1	0.59	9.5	7.7	3.1	2	1	0	3	3	3	0	Not1	N-terminal	domain,	CCR4-Not	complex	component
Mod_r	PF07200.13	gi|257052559|ref|YP_003130392.1|	-	1.7	8.8	22.6	3.7	7.7	1.9	4.5	3	2	2	5	5	5	0	Modifier	of	rudimentary	(Mod(r))	protein
YkyA	PF10368.9	gi|257052559|ref|YP_003130392.1|	-	1.7	8.3	34.1	1	9.0	7.0	3.9	2	1	2	4	4	3	0	Putative	cell-wall	binding	lipoprotein
Occludin_ELL	PF07303.13	gi|257052559|ref|YP_003130392.1|	-	1.8	9.3	9.6	16	6.2	0.3	4.8	3	2	3	6	6	5	0	Occludin	homology	domain
DUF724	PF05266.14	gi|257052559|ref|YP_003130392.1|	-	2	8.2	21.8	9.5	6.0	0.0	3.8	3	1	1	4	4	4	0	Protein	of	unknown	function	(DUF724)
IFT46_B_C	PF12317.8	gi|257052559|ref|YP_003130392.1|	-	2.1	8.0	11.2	14	5.3	3.3	3.2	2	1	2	4	4	3	0	Intraflagellar	transport	complex	B	protein	46	C	terminal
Bacillus_HBL	PF05791.11	gi|257052559|ref|YP_003130392.1|	-	2.5	7.9	13.1	1.5	8.6	2.2	4.0	2	1	2	4	4	4	0	Bacillus	haemolytic	enterotoxin	(HBL)
Nup54	PF13874.6	gi|257052559|ref|YP_003130392.1|	-	2.8	8.1	19.0	2.3	8.3	0.2	4.3	3	2	0	3	3	3	0	Nucleoporin	complex	subunit	54
CorA	PF01544.18	gi|257052559|ref|YP_003130392.1|	-	2.8	7.2	22.7	1.9	7.8	4.9	4.0	2	1	3	5	5	5	0	CorA-like	Mg2+	transporter	protein
Ndc1_Nup	PF09531.10	gi|257052559|ref|YP_003130392.1|	-	2.8	6.5	4.1	4.1	6.0	0.0	2.4	2	0	0	2	2	2	0	Nucleoporin	protein	Ndc1-Nup
USP8_interact	PF08941.10	gi|257052559|ref|YP_003130392.1|	-	3	7.6	11.0	3.6	7.4	0.6	3.7	3	2	1	4	4	4	0	USP8	interacting
Thioesterase	PF00975.20	gi|257052559|ref|YP_003130392.1|	-	3.3	7.8	7.1	1.1	9.3	0.9	2.6	2	1	0	2	2	2	0	Thioesterase	domain
DUF4164	PF13747.6	gi|257052559|ref|YP_003130392.1|	-	4.7	7.6	29.0	0.76	10.1	5.8	4.1	3	1	1	4	4	4	0	Domain	of	unknown	function	(DUF4164)
ZapB	PF06005.12	gi|257052559|ref|YP_003130392.1|	-	4.8	7.7	19.2	1.1	9.8	0.2	5.1	2	1	1	3	3	2	0	Cell	division	protein	ZapB
Lectin_N	PF03954.14	gi|257052559|ref|YP_003130392.1|	-	5.4	6.8	12.2	0.93	9.2	1.5	3.7	4	1	0	4	4	4	0	Hepatic	lectin,	N-terminal	domain
ATG_C	PF09333.11	gi|257052559|ref|YP_003130392.1|	-	5.5	7.4	7.7	1.4e+02	2.9	0.1	4.4	3	1	2	5	5	5	0	Autophagy-related	protein	C	terminal	domain
T7SS_ESX_EspC	PF10824.8	gi|257052559|ref|YP_003130392.1|	-	5.7	7.5	32.8	0.14	12.7	1.6	5.7	3	2	3	6	6	5	0	Excreted	virulence	factor	EspC,	type	VII	ESX	diderm
CENP-H	PF05837.12	gi|257052559|ref|YP_003130392.1|	-	5.7	7.4	28.3	5.1	7.5	3.0	4.7	3	2	2	5	5	5	0	Centromere	protein	H	(CENP-H)
HisKA_3	PF07730.13	gi|257052559|ref|YP_003130392.1|	-	6.4	7.4	25.5	19	5.8	0.3	6.4	3	2	2	5	5	5	0	Histidine	kinase
Cep57_MT_bd	PF06657.13	gi|257052559|ref|YP_003130392.1|	-	6.8	7.2	13.8	6.2	7.3	0.4	4.6	3	2	1	4	4	4	0	Centrosome	microtubule-binding	domain	of	Cep57
TSC22	PF01166.18	gi|257052559|ref|YP_003130392.1|	-	7.1	7.0	11.4	22	5.4	0.3	4.9	4	1	0	4	4	4	0	TSC-22/dip/bun	family
DUF2205	PF10224.9	gi|257052559|ref|YP_003130392.1|	-	8	6.5	11.5	4.9	7.2	0.1	4.7	3	1	1	4	4	4	0	Short	coiled-coil	protein
Bactofilin	PF04519.13	gi|257052560|ref|YP_003130393.1|	-	7.2e-14	51.9	7.2	5.3e-10	39.5	0.2	3.3	2	1	0	3	3	3	2	Polymer-forming	cytoskeletal
Hexapep	PF00132.24	gi|257052560|ref|YP_003130393.1|	-	5.5e-05	22.7	6.6	0.04	13.6	0.0	5.8	5	2	2	7	7	7	2	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|257052560|ref|YP_003130393.1|	-	0.32	10.8	6.9	1.2	9.0	0.0	4.2	4	1	0	4	4	4	0	Hexapeptide	repeat	of	succinyl-transferase
PPP4R2	PF09184.11	gi|257052560|ref|YP_003130393.1|	-	3.4	7.2	7.3	4.5	6.8	7.3	1.1	1	0	0	1	1	1	0	PPP4R2
ERCC4	PF02732.15	gi|257052562|ref|YP_003130395.1|	-	1.5e-22	80.5	0.0	4.4e-22	79.0	0.0	1.9	1	0	0	1	1	1	1	ERCC4	domain
Helicase_C	PF00271.31	gi|257052562|ref|YP_003130395.1|	-	4.3e-22	78.5	0.0	1.6e-21	76.7	0.0	2.0	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.29	gi|257052562|ref|YP_003130395.1|	-	4.1e-14	52.7	0.0	8.2e-14	51.7	0.0	1.5	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
HHH_2	PF12826.7	gi|257052562|ref|YP_003130395.1|	-	2.9e-11	43.3	0.1	1e-10	41.5	0.1	1.9	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
HHH_5	PF14520.6	gi|257052562|ref|YP_003130395.1|	-	6.1e-11	42.8	0.0	2.8e-10	40.6	0.0	2.1	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
ResIII	PF04851.15	gi|257052562|ref|YP_003130395.1|	-	6.1e-10	39.4	0.0	1.2e-09	38.4	0.0	1.5	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
HHH	PF00633.23	gi|257052562|ref|YP_003130395.1|	-	2.6e-07	30.2	0.1	7.7e-06	25.5	0.0	2.7	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
RuvB_N	PF05496.12	gi|257052562|ref|YP_003130395.1|	-	0.014	15.2	0.0	0.034	13.9	0.0	1.6	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
Helicase_C_2	PF13307.6	gi|257052562|ref|YP_003130395.1|	-	0.1	12.8	0.1	0.33	11.1	0.1	1.9	1	1	1	2	2	2	0	Helicase	C-terminal	domain
DUF4404	PF14357.6	gi|257052562|ref|YP_003130395.1|	-	0.26	12.0	5.4	0.28	11.9	0.2	3.4	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4404)
HGTP_anticodon	PF03129.20	gi|257052564|ref|YP_003130397.1|	-	5.2e-23	81.0	0.0	2e-22	79.1	0.0	2.0	2	0	0	2	2	2	1	Anticodon	binding	domain
tRNA-synt_2b	PF00587.25	gi|257052564|ref|YP_003130397.1|	-	4.5e-09	36.5	0.0	2.2e-08	34.3	0.0	1.9	2	0	0	2	2	2	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
zf-ribbon_3	PF13248.6	gi|257052564|ref|YP_003130397.1|	-	0.0086	15.5	0.5	1.7	8.1	0.0	2.4	2	0	0	2	2	2	2	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|257052564|ref|YP_003130397.1|	-	0.055	13.6	0.5	6.8	6.9	0.0	2.4	2	0	0	2	2	2	0	Zinc	ribbon	domain
Ribosomal_L32p	PF01783.23	gi|257052564|ref|YP_003130397.1|	-	0.099	12.9	0.1	7.1	7.0	0.0	2.7	3	0	0	3	3	3	0	Ribosomal	L32p	protein	family
Mu-like_Com	PF10122.9	gi|257052564|ref|YP_003130397.1|	-	0.22	11.0	0.2	13	5.4	0.0	2.6	3	0	0	3	3	3	0	Mu-like	prophage	protein	Com
Prok-RING_1	PF14446.6	gi|257052564|ref|YP_003130397.1|	-	2.2	8.3	4.6	4.6	7.2	0.1	2.7	3	0	0	3	3	3	0	Prokaryotic	RING	finger	family	1
DUF348	PF03990.14	gi|257052564|ref|YP_003130397.1|	-	7	6.5	8.1	30	4.5	0.2	3.8	4	0	0	4	4	4	0	G5-linked-Ubiquitin-like	domain
CBS	PF00571.28	gi|257052565|ref|YP_003130398.1|	-	2.6e-31	107.9	13.0	3.3e-10	40.2	0.3	4.1	4	0	0	4	4	4	4	CBS	domain
2-Hacid_dh_C	PF02826.19	gi|257052567|ref|YP_003130400.1|	-	2.1e-35	121.7	0.0	3.5e-35	121.0	0.0	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.30	gi|257052567|ref|YP_003130400.1|	-	8.7e-22	77.2	0.9	1.5e-21	76.5	0.9	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
ACT	PF01842.25	gi|257052567|ref|YP_003130400.1|	-	1.6e-06	27.7	3.6	6.4e-05	22.6	0.1	3.7	3	0	0	3	3	3	1	ACT	domain
NAD_binding_7	PF13241.6	gi|257052567|ref|YP_003130400.1|	-	0.016	15.6	0.0	0.042	14.3	0.0	1.8	1	0	0	1	1	1	0	Putative	NAD(P)-binding
IlvN	PF07991.12	gi|257052567|ref|YP_003130400.1|	-	0.064	12.8	0.0	0.18	11.4	0.0	1.8	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
PALP	PF00291.25	gi|257052569|ref|YP_003130402.1|	-	1.6e-70	237.9	2.0	1.9e-70	237.6	2.0	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
MazE_antitoxin	PF04014.18	gi|257052570|ref|YP_003130403.1|	-	6.2e-09	35.6	0.1	8.5e-09	35.2	0.1	1.2	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
PrlF_antitoxin	PF15937.5	gi|257052570|ref|YP_003130403.1|	-	1.3e-05	25.5	0.0	1.6e-05	25.3	0.0	1.1	1	0	0	1	1	1	1	prlF	antitoxin	for	toxin	YhaV_toxin
PIN	PF01850.21	gi|257052571|ref|YP_003130404.1|	-	3.3e-17	63.1	1.7	3.7e-17	63.0	1.7	1.0	1	0	0	1	1	1	1	PIN	domain
PIN_3	PF13470.6	gi|257052571|ref|YP_003130404.1|	-	1.1e-05	26.2	0.2	1.2e-05	26.0	0.2	1.2	1	0	0	1	1	1	1	PIN	domain
OTCace_N	PF02729.21	gi|257052572|ref|YP_003130405.1|	-	7.8e-51	172.0	0.0	1.4e-50	171.2	0.0	1.4	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	carbamoyl-P	binding	domain
OTCace	PF00185.24	gi|257052572|ref|YP_003130405.1|	-	1.2e-50	171.7	0.0	2.3e-50	170.7	0.0	1.5	2	0	0	2	2	2	1	Aspartate/ornithine	carbamoyltransferase,	Asp/Orn	binding	domain
Glyco_hydro_4	PF02056.16	gi|257052572|ref|YP_003130405.1|	-	0.043	13.4	0.1	0.21	11.1	0.1	2.0	1	1	0	1	1	1	0	Family	4	glycosyl	hydrolase
Peptidase_M20	PF01546.28	gi|257052573|ref|YP_003130406.1|	-	2.6e-24	86.1	0.2	3.5e-24	85.7	0.2	1.2	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|257052573|ref|YP_003130406.1|	-	1.6e-07	31.2	0.0	3.4e-07	30.2	0.0	1.6	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
Aminotran_3	PF00202.21	gi|257052574|ref|YP_003130407.1|	-	1.5e-106	356.5	0.1	1.9e-106	356.2	0.1	1.1	1	0	0	1	1	1	1	Aminotransferase	class-III
Beta_elim_lyase	PF01212.21	gi|257052574|ref|YP_003130407.1|	-	0.07	12.4	0.0	0.12	11.7	0.0	1.3	1	0	0	1	1	1	0	Beta-eliminating	lyase
AA_kinase	PF00696.28	gi|257052575|ref|YP_003130408.1|	-	4.4e-36	124.7	0.7	5.1e-36	124.5	0.7	1.0	1	0	0	1	1	1	1	Amino	acid	kinase	family
Semialdhyde_dh	PF01118.24	gi|257052576|ref|YP_003130409.1|	-	1.2e-28	100.0	0.0	2.1e-28	99.2	0.0	1.5	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
Semialdhyde_dhC	PF02774.18	gi|257052576|ref|YP_003130409.1|	-	3.3e-07	30.6	0.0	6.2e-07	29.7	0.0	1.5	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	dimerisation	domain
DapB_N	PF01113.20	gi|257052576|ref|YP_003130409.1|	-	0.0093	16.1	0.0	0.02	15.0	0.0	1.6	1	1	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
RimK	PF08443.11	gi|257052577|ref|YP_003130410.1|	-	5.7e-22	78.2	0.0	7.5e-22	77.8	0.0	1.1	1	0	0	1	1	1	1	RimK-like	ATP-grasp	domain
GSH-S_ATP	PF02955.16	gi|257052577|ref|YP_003130410.1|	-	7.5e-09	35.2	0.0	1.2e-08	34.5	0.0	1.3	1	0	0	1	1	1	1	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
ATP-grasp_3	PF02655.14	gi|257052577|ref|YP_003130410.1|	-	2.9e-08	33.9	0.0	4e-08	33.5	0.0	1.2	1	0	0	1	1	1	1	ATP-grasp	domain
CPSase_L_D2	PF02786.17	gi|257052577|ref|YP_003130410.1|	-	6.1e-06	25.9	0.0	9.9e-06	25.2	0.0	1.3	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATP-grasp_5	PF13549.6	gi|257052577|ref|YP_003130410.1|	-	1.7e-05	24.4	0.1	0.0011	18.5	0.0	2.8	1	1	1	2	2	2	1	ATP-grasp	domain
ATP-grasp	PF02222.22	gi|257052577|ref|YP_003130410.1|	-	0.00011	21.8	0.0	0.0007	19.2	0.0	2.3	2	1	0	2	2	2	1	ATP-grasp	domain
ATPgrasp_ST	PF14397.6	gi|257052577|ref|YP_003130410.1|	-	0.022	14.0	0.0	0.063	12.5	0.0	1.7	2	0	0	2	2	2	0	Sugar-transfer	associated	ATP-grasp
Lyase_1	PF00206.20	gi|257052579|ref|YP_003130412.1|	-	5.1e-54	183.8	1.4	7.5e-54	183.2	0.1	1.8	2	0	0	2	2	2	1	Lyase
ASL_C2	PF14698.6	gi|257052579|ref|YP_003130412.1|	-	3.9e-15	56.4	3.7	3.9e-15	56.4	3.7	2.9	3	0	0	3	3	3	1	Argininosuccinate	lyase	C-terminal
DUF4226	PF10774.9	gi|257052579|ref|YP_003130412.1|	-	0.54	10.6	8.3	0.76	10.1	2.7	2.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4226)
Arginosuc_synth	PF00764.19	gi|257052580|ref|YP_003130413.1|	-	3.3e-143	477.7	0.0	3.8e-143	477.4	0.0	1.0	1	0	0	1	1	1	1	Arginosuccinate	synthase
QueC	PF06508.13	gi|257052580|ref|YP_003130413.1|	-	0.0001	21.9	0.0	0.00019	21.0	0.0	1.4	1	0	0	1	1	1	1	Queuosine	biosynthesis	protein	QueC
Asn_synthase	PF00733.21	gi|257052580|ref|YP_003130413.1|	-	0.0012	18.6	0.0	0.002	17.9	0.0	1.2	1	0	0	1	1	1	1	Asparagine	synthase
NAD_synthase	PF02540.17	gi|257052580|ref|YP_003130413.1|	-	0.018	14.2	0.0	0.025	13.7	0.0	1.2	1	0	0	1	1	1	0	NAD	synthase
tRNA_Me_trans	PF03054.16	gi|257052580|ref|YP_003130413.1|	-	0.027	13.3	0.0	0.044	12.6	0.0	1.3	1	0	0	1	1	1	0	tRNA	methyl	transferase
DUF4282	PF14110.6	gi|257052581|ref|YP_003130414.1|	-	0.068	13.9	6.2	0.084	13.6	6.2	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4282)
CAAD	PF14159.6	gi|257052581|ref|YP_003130414.1|	-	7.6	6.4	10.6	41	4.1	10.8	1.8	1	1	0	1	1	1	0	CAAD	domains	of	cyanobacterial	aminoacyl-tRNA	synthetase
2_5_RNA_ligase2	PF13563.6	gi|257052582|ref|YP_003130415.1|	-	5.4e-16	58.8	0.0	9.7e-16	58.0	0.0	1.5	1	1	0	1	1	1	1	2'-5'	RNA	ligase	superfamily
LigT_PEase	PF02834.16	gi|257052582|ref|YP_003130415.1|	-	2.2e-09	37.4	0.1	0.0028	17.8	0.0	2.7	2	1	0	2	2	2	2	LigT	like	Phosphoesterase
AKAP7_NLS	PF10469.9	gi|257052582|ref|YP_003130415.1|	-	2.4e-06	27.6	0.0	3e-06	27.3	0.0	1.1	1	0	0	1	1	1	1	AKAP7	2'5'	RNA	ligase-like	domain
CBS	PF00571.28	gi|257052583|ref|YP_003130416.1|	-	1.9e-24	85.8	4.7	2.6e-11	43.8	0.5	2.4	2	0	0	2	2	2	2	CBS	domain
Peptidase_M50	PF02163.22	gi|257052583|ref|YP_003130416.1|	-	4e-14	52.5	8.4	2.8e-08	33.4	0.7	2.8	1	1	0	2	2	2	2	Peptidase	family	M50
DUF3267	PF11667.8	gi|257052583|ref|YP_003130416.1|	-	2.3	8.6	5.8	0.4	11.0	1.3	2.0	2	0	0	2	2	2	0	Putative	zincin	peptidase
Ham1p_like	PF01725.16	gi|257052585|ref|YP_003130418.1|	-	5.7e-51	173.1	0.0	6.4e-51	172.9	0.0	1.0	1	0	0	1	1	1	1	Ham1	family
PAS_4	PF08448.10	gi|257052586|ref|YP_003130419.1|	-	6.8e-15	55.3	0.0	2e-14	53.8	0.0	1.8	1	0	0	1	1	1	1	PAS	fold
Response_reg	PF00072.24	gi|257052586|ref|YP_003130419.1|	-	1.6e-13	50.8	0.0	4.2e-13	49.5	0.0	1.8	2	0	0	2	2	2	1	Response	regulator	receiver	domain
HisKA	PF00512.25	gi|257052586|ref|YP_003130419.1|	-	4.8e-13	48.9	0.8	4.8e-13	48.9	0.8	2.8	4	0	0	4	4	4	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c	PF02518.26	gi|257052586|ref|YP_003130419.1|	-	9.3e-13	48.7	0.0	1.8e-12	47.8	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
TBCA	PF02970.16	gi|257052586|ref|YP_003130419.1|	-	0.02	15.2	1.8	0.13	12.6	0.1	2.8	3	0	0	3	3	3	0	Tubulin	binding	cofactor	A
OKR_DC_1_N	PF03709.15	gi|257052586|ref|YP_003130419.1|	-	0.032	14.5	0.0	0.25	11.6	0.0	2.3	2	0	0	2	2	2	0	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
DUF3298	PF11738.8	gi|257052586|ref|YP_003130419.1|	-	0.094	13.8	0.0	0.29	12.2	0.0	1.8	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3298)
PAS_9	PF13426.7	gi|257052586|ref|YP_003130419.1|	-	0.14	12.4	0.0	0.41	10.9	0.0	1.8	1	0	0	1	1	1	0	PAS	domain
AdoHcyase	PF05221.17	gi|257052588|ref|YP_003130421.1|	-	9.9e-50	169.4	0.0	2.5e-25	89.3	0.0	2.0	1	1	1	2	2	2	2	S-adenosyl-L-homocysteine	hydrolase
AdoHcyase_NAD	PF00670.21	gi|257052588|ref|YP_003130421.1|	-	1.9e-47	161.3	2.0	3.3e-47	160.5	0.4	2.0	2	0	0	2	2	2	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|257052588|ref|YP_003130421.1|	-	1.1e-11	44.4	0.3	2.1e-11	43.5	0.3	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.12	gi|257052588|ref|YP_003130421.1|	-	1.1e-07	31.5	0.1	3.1e-07	30.1	0.1	1.7	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
ELFV_dehydrog	PF00208.21	gi|257052588|ref|YP_003130421.1|	-	0.027	14.2	0.2	0.048	13.4	0.2	1.4	1	0	0	1	1	1	0	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
Nop14	PF04147.12	gi|257052589|ref|YP_003130422.1|	-	0.59	8.3	73.6	0.044	12.0	43.3	2.1	2	0	0	2	2	2	0	Nop14-like	family
ECM1	PF05782.11	gi|257052589|ref|YP_003130422.1|	-	0.9	8.4	12.6	1.6	7.5	12.6	1.4	1	0	0	1	1	1	0	Extracellular	matrix	protein	1	(ECM1)
DUF262	PF03235.14	gi|257052589|ref|YP_003130422.1|	-	1.4	9.0	11.3	0.037	14.2	3.8	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	DUF262
GAGA_bind	PF06217.12	gi|257052589|ref|YP_003130422.1|	-	2	8.6	5.6	3.5	7.8	5.6	1.4	1	0	0	1	1	1	0	GAGA	binding	protein-like	family
RR_TM4-6	PF06459.12	gi|257052589|ref|YP_003130422.1|	-	2.1	8.1	42.7	0.43	10.3	29.4	2.2	2	0	0	2	2	2	0	Ryanodine	Receptor	TM	4-6
Membralin	PF09746.9	gi|257052589|ref|YP_003130422.1|	-	3.8	6.4	7.8	5	6.1	7.8	1.2	1	0	0	1	1	1	0	Tumour-associated	protein
FG-GAP_2	PF14312.6	gi|257052589|ref|YP_003130422.1|	-	6.1	7.2	8.7	1.2	9.5	2.4	3.0	2	1	1	3	3	3	0	FG-GAP	repeat
Amidohydro_1	PF01979.20	gi|257052590|ref|YP_003130423.1|	-	7.7e-72	242.5	3.3	8.9e-72	242.3	3.3	1.0	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|257052590|ref|YP_003130423.1|	-	1.3e-20	74.4	18.2	1.6e-15	57.6	12.0	2.8	2	1	0	2	2	2	2	Amidohydrolase	family
A_deaminase	PF00962.22	gi|257052590|ref|YP_003130423.1|	-	1.3e-05	24.7	0.0	2.6e-05	23.7	0.0	1.4	1	0	0	1	1	1	1	Adenosine/AMP	deaminase
HTH_23	PF13384.6	gi|257052591|ref|YP_003130424.1|	-	4e-05	23.3	0.1	8.5e-05	22.2	0.1	1.5	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_28	PF13518.6	gi|257052591|ref|YP_003130424.1|	-	0.00026	21.1	0.9	0.002	18.2	0.1	2.5	1	1	1	2	2	2	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|257052591|ref|YP_003130424.1|	-	0.0041	17.0	0.0	0.0082	16.0	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Rrf2	PF02082.20	gi|257052591|ref|YP_003130424.1|	-	0.015	15.6	0.0	1	9.7	0.0	2.4	2	0	0	2	2	2	0	Transcriptional	regulator
MarR_2	PF12802.7	gi|257052591|ref|YP_003130424.1|	-	0.028	14.3	0.2	0.073	13.0	0.1	1.7	1	1	1	2	2	2	0	MarR	family
HTH_1	PF00126.27	gi|257052591|ref|YP_003130424.1|	-	0.03	14.3	1.1	0.062	13.3	0.1	1.9	2	0	0	2	2	2	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_29	PF13551.6	gi|257052591|ref|YP_003130424.1|	-	0.047	13.7	0.0	0.088	12.8	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_47	PF16221.5	gi|257052591|ref|YP_003130424.1|	-	0.063	12.8	0.0	0.13	11.9	0.0	1.4	1	0	0	1	1	1	0	winged	helix-turn-helix
RPA_C	PF08784.11	gi|257052591|ref|YP_003130424.1|	-	0.089	13.5	0.0	0.25	12.0	0.0	1.6	2	0	0	2	2	2	0	Replication	protein	A	C	terminal
DUF1871	PF08958.10	gi|257052591|ref|YP_003130424.1|	-	0.18	12.2	0.0	0.35	11.2	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1871)
NTP_transf_5	PF14907.6	gi|257052592|ref|YP_003130425.1|	-	1.4e-07	31.5	0.2	2.7e-07	30.5	0.0	1.6	2	0	0	2	2	2	1	Uncharacterised	nucleotidyltransferase
AbiEii	PF08843.11	gi|257052592|ref|YP_003130425.1|	-	0.0063	16.5	0.4	0.012	15.6	0.4	1.7	1	1	0	1	1	1	1	Nucleotidyl	transferase	AbiEii	toxin,	Type	IV	TA	system
DUF99	PF01949.16	gi|257052592|ref|YP_003130425.1|	-	0.044	13.2	0.0	0.13	11.6	0.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	DUF99
RHH_1	PF01402.21	gi|257052593|ref|YP_003130426.1|	-	6.8e-06	25.8	0.8	8.4e-06	25.5	0.8	1.2	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
ParG	PF09274.10	gi|257052593|ref|YP_003130426.1|	-	0.1	12.8	0.7	0.19	11.9	0.7	1.6	1	1	0	1	1	1	0	ParG
HisKA_7TM	PF16927.5	gi|257052594|ref|YP_003130427.1|	-	5.3e-16	59.3	12.4	8.2e-16	58.7	12.4	1.2	1	0	0	1	1	1	1	N-terminal	7TM	region	of	histidine	kinase
HATPase_c	PF02518.26	gi|257052594|ref|YP_003130427.1|	-	5.9e-16	59.0	0.1	9.3e-16	58.3	0.1	1.3	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|257052594|ref|YP_003130427.1|	-	8.3e-11	41.8	2.2	8.3e-11	41.8	2.2	2.4	2	1	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_4	PF08448.10	gi|257052594|ref|YP_003130427.1|	-	6.3e-05	23.2	0.1	0.00019	21.7	0.1	1.9	1	0	0	1	1	1	1	PAS	fold
PAS_8	PF13188.7	gi|257052594|ref|YP_003130427.1|	-	0.014	15.4	0.1	0.077	13.0	0.1	2.4	1	0	0	1	1	1	0	PAS	domain
HATPase_c_3	PF13589.6	gi|257052594|ref|YP_003130427.1|	-	0.023	14.5	0.0	0.045	13.6	0.0	1.4	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS	PF00989.25	gi|257052594|ref|YP_003130427.1|	-	0.033	14.2	0.0	0.18	11.8	0.0	2.2	2	0	0	2	2	2	0	PAS	fold
HATPase_c_2	PF13581.6	gi|257052594|ref|YP_003130427.1|	-	0.052	13.5	0.1	0.1	12.6	0.1	1.4	1	0	0	1	1	1	0	Histidine	kinase-like	ATPase	domain
LUC7	PF03194.15	gi|257052594|ref|YP_003130427.1|	-	0.2	11.3	0.2	0.33	10.6	0.2	1.2	1	0	0	1	1	1	0	LUC7	N_terminus
HisG	PF01634.18	gi|257052595|ref|YP_003130428.1|	-	1.3e-48	165.0	0.1	2e-48	164.4	0.1	1.2	1	0	0	1	1	1	1	ATP	phosphoribosyltransferase
HisG_C	PF08029.11	gi|257052595|ref|YP_003130428.1|	-	2e-27	95.1	0.1	3.2e-27	94.5	0.1	1.3	1	0	0	1	1	1	1	HisG,	C-terminal	domain
NMT1	PF09084.11	gi|257052595|ref|YP_003130428.1|	-	0.00056	19.9	0.0	0.0013	18.8	0.0	1.5	1	1	0	1	1	1	1	NMT1/THI5	like
Phosphonate-bd	PF12974.7	gi|257052595|ref|YP_003130428.1|	-	0.0074	15.9	0.2	0.016	14.8	0.2	1.6	1	1	0	1	1	1	1	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
DUF3040	PF11239.8	gi|257052596|ref|YP_003130429.1|	-	0.035	14.4	3.6	0.046	14.0	3.6	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3040)
TrkA_C	PF02080.21	gi|257052597|ref|YP_003130430.1|	-	1.5e-30	104.8	0.3	6.6e-17	61.1	0.0	2.8	2	0	0	2	2	2	2	TrkA-C	domain
PhoU	PF01895.19	gi|257052597|ref|YP_003130430.1|	-	5.6e-20	71.6	6.5	9.2e-11	42.1	1.5	2.5	2	0	0	2	2	2	2	PhoU	domain
PhoU_div	PF01865.16	gi|257052597|ref|YP_003130430.1|	-	0.0064	15.9	1.2	0.87	8.9	0.1	2.2	2	0	0	2	2	2	2	Protein	of	unknown	function	DUF47
CLZ	PF16526.5	gi|257052597|ref|YP_003130430.1|	-	0.57	10.6	2.2	8.2	6.9	0.1	2.5	2	1	0	2	2	2	0	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
KfrA_N	PF11740.8	gi|257052597|ref|YP_003130430.1|	-	0.78	10.4	8.4	1.2	9.8	0.3	3.0	2	1	1	3	3	3	0	Plasmid	replication	region	DNA-binding	N-term
Citrate_synt	PF00285.21	gi|257052598|ref|YP_003130431.1|	-	1.1e-122	409.6	0.1	1.3e-122	409.4	0.1	1.0	1	0	0	1	1	1	1	Citrate	synthase,	C-terminal	domain
Usp	PF00582.26	gi|257052599|ref|YP_003130432.1|	-	8.5e-23	81.4	3.1	1e-22	81.2	3.1	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
baeRF_family10	PF18854.1	gi|257052599|ref|YP_003130432.1|	-	0.0098	16.1	3.2	0.5	10.6	0.0	2.1	1	1	1	2	2	2	2	Bacterial	archaeo-eukaryotic	release	factor	family	10
Aldo_ket_red	PF00248.21	gi|257052600|ref|YP_003130433.1|	-	2.9e-63	213.8	0.0	1e-60	205.4	0.0	2.0	1	1	0	1	1	1	1	Aldo/keto	reductase	family
Seadorna_VP6	PF07407.11	gi|257052600|ref|YP_003130433.1|	-	0.18	10.7	0.0	0.24	10.3	0.0	1.2	1	0	0	1	1	1	0	Seadornavirus	VP6	protein
PALP	PF00291.25	gi|257052601|ref|YP_003130434.1|	-	1.1e-81	274.5	12.2	1.3e-81	274.2	12.2	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
ACT_4	PF13291.6	gi|257052601|ref|YP_003130434.1|	-	2e-05	25.1	0.1	8e-05	23.2	0.0	2.0	2	0	0	2	2	2	1	ACT	domain
ACT	PF01842.25	gi|257052601|ref|YP_003130434.1|	-	0.0041	16.9	0.2	0.014	15.2	0.2	1.9	1	0	0	1	1	1	1	ACT	domain
PT	PF04886.12	gi|257052602|ref|YP_003130435.1|	-	0.0069	15.9	25.8	0.018	14.6	25.8	1.7	1	1	0	1	1	1	1	PT	repeat
TAT_signal	PF10518.9	gi|257052602|ref|YP_003130435.1|	-	0.067	13.1	2.0	0.12	12.3	2.0	1.4	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
TALPID3	PF15324.6	gi|257052602|ref|YP_003130435.1|	-	1.8	6.2	4.9	2	6.0	4.9	1.0	1	0	0	1	1	1	0	Hedgehog	signalling	target
SWIM	PF04434.17	gi|257052603|ref|YP_003130436.1|	-	0.00081	19.0	2.9	0.0069	16.0	2.9	2.1	1	1	0	1	1	1	1	SWIM	zinc	finger
Thg1	PF04446.12	gi|257052603|ref|YP_003130436.1|	-	0.13	12.4	0.0	0.16	12.0	0.0	1.2	1	0	0	1	1	1	0	tRNAHis	guanylyltransferase
TRM	PF02005.16	gi|257052604|ref|YP_003130437.1|	-	2.6e-91	306.6	0.0	3.3e-91	306.3	0.0	1.0	1	0	0	1	1	1	1	N2,N2-dimethylguanosine	tRNA	methyltransferase
MTS	PF05175.14	gi|257052604|ref|YP_003130437.1|	-	1.9e-06	27.6	0.1	5.3e-06	26.1	0.0	1.8	2	0	0	2	2	2	1	Methyltransferase	small	domain
Methyltransf_31	PF13847.6	gi|257052604|ref|YP_003130437.1|	-	0.00023	21.0	0.0	0.00038	20.3	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|257052604|ref|YP_003130437.1|	-	0.00033	21.3	0.1	0.0011	19.6	0.1	1.9	1	0	0	1	1	1	1	Methyltransferase	domain
Cons_hypoth95	PF03602.15	gi|257052604|ref|YP_003130437.1|	-	0.015	15.0	0.0	0.023	14.3	0.0	1.3	1	0	0	1	1	1	0	Conserved	hypothetical	protein	95
PrmA	PF06325.13	gi|257052604|ref|YP_003130437.1|	-	0.055	12.8	0.2	0.081	12.3	0.2	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
Zn-ribbon_8	PF09723.10	gi|257052604|ref|YP_003130437.1|	-	0.18	12.0	2.5	0.6	10.3	2.1	2.0	2	0	0	2	2	2	0	Zinc	ribbon	domain
HTH_20	PF12840.7	gi|257052606|ref|YP_003130439.1|	-	3.8e-08	33.3	0.2	6.2e-08	32.6	0.2	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|257052606|ref|YP_003130439.1|	-	2.3e-07	30.5	0.0	3.5e-07	30.0	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.19	gi|257052606|ref|YP_003130439.1|	-	0.00063	19.6	0.0	0.00093	19.0	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_30	PF13556.6	gi|257052606|ref|YP_003130439.1|	-	0.012	15.4	0.0	0.02	14.7	0.0	1.3	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
HTH_24	PF13412.6	gi|257052606|ref|YP_003130439.1|	-	0.018	14.6	0.1	0.05	13.2	0.0	1.8	2	1	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
GntR	PF00392.21	gi|257052606|ref|YP_003130439.1|	-	0.019	14.6	0.0	0.036	13.7	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_IclR	PF09339.10	gi|257052606|ref|YP_003130439.1|	-	0.031	14.1	0.0	0.048	13.5	0.0	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_45	PF14947.6	gi|257052606|ref|YP_003130439.1|	-	0.036	14.1	0.0	0.043	13.8	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix
Phage_rep_org_N	PF09681.10	gi|257052606|ref|YP_003130439.1|	-	0.039	13.9	0.0	0.045	13.7	0.0	1.2	1	0	0	1	1	1	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
HTH_29	PF13551.6	gi|257052606|ref|YP_003130439.1|	-	0.075	13.1	0.1	0.26	11.4	0.0	1.8	2	0	0	2	2	2	0	Winged	helix-turn	helix
HTH_11	PF08279.12	gi|257052606|ref|YP_003130439.1|	-	0.093	12.7	0.0	0.15	12.0	0.0	1.3	1	0	0	1	1	1	0	HTH	domain
DUF2089	PF09862.9	gi|257052606|ref|YP_003130439.1|	-	0.2	11.7	0.0	0.2	11.7	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2089)
Oxidored_molyb	PF00174.19	gi|257052607|ref|YP_003130440.1|	-	1.2e-31	109.7	0.0	1.8e-31	109.0	0.0	1.3	1	0	0	1	1	1	1	Oxidoreductase	molybdopterin	binding	domain
Mo-co_dimer	PF03404.16	gi|257052607|ref|YP_003130440.1|	-	2.6e-08	34.0	0.4	1.2e-07	31.9	0.4	1.9	1	1	0	1	1	1	1	Mo-co	oxidoreductase	dimerisation	domain
PG_binding_3	PF09374.10	gi|257052608|ref|YP_003130441.1|	-	0.063	13.5	3.3	49	4.3	3.3	3.6	1	1	0	1	1	1	0	Predicted	Peptidoglycan	domain
Raftlin	PF15250.6	gi|257052608|ref|YP_003130441.1|	-	0.14	10.9	5.8	0.17	10.6	5.8	1.0	1	0	0	1	1	1	0	Raftlin
DUF2892	PF11127.8	gi|257052609|ref|YP_003130442.1|	-	7.9	6.6	14.7	0.54	10.3	4.8	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2892)
Virul_fac_BrkB	PF03631.15	gi|257052610|ref|YP_003130443.1|	-	2e-44	152.1	26.9	2e-44	152.1	26.9	2.0	2	0	0	2	2	2	1	Virulence	factor	BrkB
DUF1192	PF06698.11	gi|257052610|ref|YP_003130443.1|	-	0.017	15.1	3.4	0.034	14.2	3.4	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1192)
DivIC	PF04977.15	gi|257052610|ref|YP_003130443.1|	-	0.063	13.1	0.1	0.16	11.8	0.1	1.6	1	0	0	1	1	1	0	Septum	formation	initiator
DUF4164	PF13747.6	gi|257052610|ref|YP_003130443.1|	-	0.14	12.5	1.8	0.24	11.7	1.8	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4164)
PhoU	PF01895.19	gi|257052610|ref|YP_003130443.1|	-	0.15	12.5	1.4	0.28	11.7	1.4	1.4	1	0	0	1	1	1	0	PhoU	domain
DUF4349	PF14257.6	gi|257052610|ref|YP_003130443.1|	-	0.23	10.9	0.0	0.23	10.9	0.0	3.1	4	1	0	4	4	4	0	Domain	of	unknown	function	(DUF4349)
PAP2	PF01569.21	gi|257052611|ref|YP_003130444.1|	-	1.2e-14	54.2	2.3	1.2e-14	54.2	2.3	2.2	2	0	0	2	2	2	1	PAP2	superfamily
PAP2_3	PF14378.6	gi|257052611|ref|YP_003130444.1|	-	0.00058	19.6	2.5	0.00058	19.6	2.5	2.0	2	1	0	2	2	2	1	PAP2	superfamily
Gln-synt_C	PF00120.24	gi|257052612|ref|YP_003130445.1|	-	2.2e-136	454.4	0.0	2.7e-136	454.1	0.0	1.1	1	0	0	1	1	1	1	Glutamine	synthetase,	catalytic	domain
Gln-synt_N	PF03951.19	gi|257052612|ref|YP_003130445.1|	-	1.3e-29	101.8	1.7	1.5e-29	101.5	0.1	1.9	2	0	0	2	2	2	1	Glutamine	synthetase,	beta-Grasp	domain
Gln-synt_N_2	PF16952.5	gi|257052612|ref|YP_003130445.1|	-	0.033	14.0	0.1	0.25	11.2	0.1	2.2	1	1	0	1	1	1	0	Glutamine	synthetase	N-terminal	domain
AsnC_trans_reg	PF01037.21	gi|257052613|ref|YP_003130446.1|	-	6.8e-13	48.4	0.1	1.2e-12	47.6	0.1	1.4	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HTH_24	PF13412.6	gi|257052613|ref|YP_003130446.1|	-	1.8e-12	46.6	0.2	3e-12	45.9	0.2	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|257052613|ref|YP_003130446.1|	-	1.3e-08	34.5	0.1	2.8e-08	33.5	0.1	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_AsnC-type	PF13404.6	gi|257052613|ref|YP_003130446.1|	-	1.8e-08	34.1	0.5	2.8e-08	33.5	0.5	1.4	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_20	PF12840.7	gi|257052613|ref|YP_003130446.1|	-	1.1e-06	28.5	0.0	2e-06	27.7	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|257052613|ref|YP_003130446.1|	-	1.9e-06	27.7	0.0	4.4e-06	26.6	0.0	1.6	1	0	0	1	1	1	1	HTH	domain
HTH_DeoR	PF08220.12	gi|257052613|ref|YP_003130446.1|	-	6.6e-05	22.6	0.3	0.00016	21.3	0.1	1.7	2	0	0	2	2	2	1	DeoR-like	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|257052613|ref|YP_003130446.1|	-	9.8e-05	22.1	0.0	0.00017	21.3	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
GntR	PF00392.21	gi|257052613|ref|YP_003130446.1|	-	0.00047	19.7	0.2	0.0012	18.5	0.0	1.7	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
HTH_Crp_2	PF13545.6	gi|257052613|ref|YP_003130446.1|	-	0.00088	19.2	0.0	0.0016	18.4	0.0	1.4	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
MarR	PF01047.22	gi|257052613|ref|YP_003130446.1|	-	0.00095	19.0	0.0	0.0016	18.3	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_38	PF13936.6	gi|257052613|ref|YP_003130446.1|	-	0.0011	18.7	0.0	0.0024	17.6	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_23	PF13384.6	gi|257052613|ref|YP_003130446.1|	-	0.0029	17.3	0.0	0.0049	16.6	0.0	1.3	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_28	PF13518.6	gi|257052613|ref|YP_003130446.1|	-	0.003	17.6	0.0	0.0053	16.9	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_10	PF04967.12	gi|257052613|ref|YP_003130446.1|	-	0.0031	17.3	0.0	0.0077	16.0	0.0	1.6	1	0	0	1	1	1	1	HTH	DNA	binding	domain
TrmB	PF01978.19	gi|257052613|ref|YP_003130446.1|	-	0.0034	17.2	0.0	0.007	16.2	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_50	PF18024.1	gi|257052613|ref|YP_003130446.1|	-	0.0086	15.7	0.0	0.017	14.7	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_29	PF13551.6	gi|257052613|ref|YP_003130446.1|	-	0.0093	16.0	0.0	0.014	15.4	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn	helix
MarR_2	PF12802.7	gi|257052613|ref|YP_003130446.1|	-	0.032	14.1	0.0	0.054	13.4	0.0	1.3	1	0	0	1	1	1	0	MarR	family
Fe_dep_repress	PF01325.19	gi|257052613|ref|YP_003130446.1|	-	0.033	14.4	0.0	0.084	13.1	0.0	1.7	2	0	0	2	2	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_34	PF13601.6	gi|257052613|ref|YP_003130446.1|	-	0.043	14.0	0.0	0.071	13.3	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_36	PF13730.6	gi|257052613|ref|YP_003130446.1|	-	0.047	13.6	0.0	0.078	12.9	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_40	PF14493.6	gi|257052613|ref|YP_003130446.1|	-	0.049	14.1	0.0	0.082	13.4	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
Rrf2	PF02082.20	gi|257052613|ref|YP_003130446.1|	-	0.056	13.8	0.0	0.13	12.6	0.0	1.6	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_9	PF08221.11	gi|257052613|ref|YP_003130446.1|	-	0.11	12.6	0.0	0.18	11.9	0.0	1.3	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
GerE	PF00196.19	gi|257052613|ref|YP_003130446.1|	-	0.12	11.9	0.1	0.4	10.2	0.0	1.8	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	luxR	family
Mga	PF05043.13	gi|257052613|ref|YP_003130446.1|	-	0.14	12.7	0.0	0.33	11.6	0.0	1.6	2	0	0	2	2	1	0	Mga	helix-turn-helix	domain
TrkA_N	PF02254.18	gi|257052614|ref|YP_003130447.1|	-	2.4e-26	92.3	0.3	3.3e-26	91.8	0.3	1.2	1	0	0	1	1	1	1	TrkA-N	domain
TrkA_C	PF02080.21	gi|257052614|ref|YP_003130447.1|	-	4.8e-12	45.5	0.1	8.2e-12	44.8	0.1	1.4	1	0	0	1	1	1	1	TrkA-C	domain
UDPG_MGDP_dh_N	PF03721.14	gi|257052614|ref|YP_003130447.1|	-	3.4e-05	23.5	0.0	7.2e-05	22.4	0.0	1.6	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
3HCDH_N	PF02737.18	gi|257052614|ref|YP_003130447.1|	-	9.1e-05	22.4	0.2	0.00012	22.0	0.2	1.3	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_7	PF13241.6	gi|257052614|ref|YP_003130447.1|	-	0.00015	22.2	0.1	0.00022	21.6	0.1	1.4	1	0	0	1	1	1	1	Putative	NAD(P)-binding
FAD_binding_3	PF01494.19	gi|257052614|ref|YP_003130447.1|	-	0.00024	20.5	0.0	0.00029	20.2	0.0	1.1	1	0	0	1	1	1	1	FAD	binding	domain
ApbA	PF02558.16	gi|257052614|ref|YP_003130447.1|	-	0.00029	20.5	0.0	0.00045	19.9	0.0	1.3	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
AdoHcyase_NAD	PF00670.21	gi|257052614|ref|YP_003130447.1|	-	0.00036	20.6	0.1	0.00047	20.3	0.1	1.3	1	0	0	1	1	1	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
NmrA	PF05368.13	gi|257052614|ref|YP_003130447.1|	-	0.003	17.2	0.1	0.004	16.7	0.1	1.3	1	0	0	1	1	1	1	NmrA-like	family
2-Hacid_dh_C	PF02826.19	gi|257052614|ref|YP_003130447.1|	-	0.0031	16.9	0.0	0.0058	16.0	0.0	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Pyr_redox_2	PF07992.14	gi|257052614|ref|YP_003130447.1|	-	0.0054	16.0	0.1	0.0065	15.7	0.1	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
IlvN	PF07991.12	gi|257052614|ref|YP_003130447.1|	-	0.0071	15.9	0.0	0.014	15.0	0.0	1.5	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
NAD_binding_2	PF03446.15	gi|257052614|ref|YP_003130447.1|	-	0.0074	16.5	0.2	0.015	15.5	0.1	1.6	2	0	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Pyr_redox	PF00070.27	gi|257052614|ref|YP_003130447.1|	-	0.012	16.2	0.1	0.025	15.2	0.1	1.5	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Gp_dh_N	PF00044.24	gi|257052614|ref|YP_003130447.1|	-	0.019	15.3	0.1	0.032	14.6	0.1	1.4	1	0	0	1	1	1	0	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
Sacchrp_dh_NADP	PF03435.18	gi|257052614|ref|YP_003130447.1|	-	0.022	15.0	0.1	0.029	14.6	0.1	1.3	1	0	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
DAO	PF01266.24	gi|257052614|ref|YP_003130447.1|	-	0.036	13.6	0.3	0.14	11.7	0.1	1.9	1	1	0	2	2	2	0	FAD	dependent	oxidoreductase
ADH_zinc_N	PF00107.26	gi|257052614|ref|YP_003130447.1|	-	0.047	13.7	0.9	7.3	6.6	0.2	2.2	1	1	1	2	2	2	0	Zinc-binding	dehydrogenase
F420_oxidored	PF03807.17	gi|257052614|ref|YP_003130447.1|	-	0.061	13.9	0.0	0.47	11.1	0.0	2.1	2	0	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
Epimerase	PF01370.21	gi|257052614|ref|YP_003130447.1|	-	0.091	12.2	0.1	0.12	11.8	0.1	1.3	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
MatE	PF01554.18	gi|257052616|ref|YP_003130449.1|	-	1.7e-52	177.3	34.1	3.7e-31	107.9	10.0	2.9	2	1	1	3	3	3	2	MatE
Polysacc_synt_C	PF14667.6	gi|257052616|ref|YP_003130449.1|	-	6.5e-08	32.8	10.6	6.5e-08	32.8	10.6	4.2	3	1	1	4	4	4	2	Polysaccharide	biosynthesis	C-terminal	domain
PK_C	PF02887.16	gi|257052617|ref|YP_003130450.1|	-	1e-06	29.0	0.0	2.1e-06	28.0	0.0	1.5	1	1	0	1	1	1	1	Pyruvate	kinase,	alpha/beta	domain
GARS_C	PF02843.16	gi|257052617|ref|YP_003130450.1|	-	0.11	12.7	0.1	0.41	11.0	0.1	1.9	2	0	0	2	2	2	0	Phosphoribosylglycinamide	synthetase,	C	domain
Pribosyltran_N	PF13793.6	gi|257052619|ref|YP_003130452.1|	-	9.9e-23	80.3	0.0	2e-20	72.9	0.0	2.2	2	0	0	2	2	2	2	N-terminal	domain	of	ribose	phosphate	pyrophosphokinase
Pribosyltran	PF00156.27	gi|257052619|ref|YP_003130452.1|	-	1.1e-08	34.8	0.5	4.5e-08	32.8	0.2	2.1	2	0	0	2	2	2	1	Phosphoribosyl	transferase	domain
Pribosyl_synth	PF14572.6	gi|257052619|ref|YP_003130452.1|	-	0.011	15.8	0.5	0.019	15.0	0.5	1.4	1	0	0	1	1	1	0	Phosphoribosyl	synthetase-associated	domain
UPRTase	PF14681.6	gi|257052619|ref|YP_003130452.1|	-	0.027	13.9	0.5	0.056	12.9	0.1	1.7	2	0	0	2	2	2	0	Uracil	phosphoribosyltransferase
Sigma70_r3	PF04539.16	gi|257052620|ref|YP_003130453.1|	-	0.046	13.8	2.2	0.26	11.4	0.4	2.8	2	1	0	2	2	2	0	Sigma-70	region	3
Latarcin	PF10279.9	gi|257052620|ref|YP_003130453.1|	-	0.077	13.4	1.5	11	6.6	0.4	2.7	2	1	0	2	2	2	0	Latarcin	precursor
DUF3071	PF11268.8	gi|257052620|ref|YP_003130453.1|	-	0.24	11.4	5.3	0.59	10.2	5.3	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3071)
DnaG_DnaB_bind	PF08278.11	gi|257052620|ref|YP_003130453.1|	-	1.9	9.1	5.6	0.82	10.3	1.4	2.1	2	0	0	2	2	2	0	DNA	primase	DnaG	DnaB-binding
Cas_Cas4	PF01930.17	gi|257052621|ref|YP_003130454.1|	-	9.7e-05	22.5	0.0	0.00069	19.8	0.0	1.9	2	0	0	2	2	2	1	Domain	of	unknown	function	DUF83
PDDEXK_1	PF12705.7	gi|257052621|ref|YP_003130454.1|	-	0.0013	18.7	0.9	0.069	13.0	0.0	2.1	2	0	0	2	2	2	2	PD-(D/E)XK	nuclease	superfamily
Sua5_yciO_yrdC	PF01300.18	gi|257052622|ref|YP_003130455.1|	-	8.4e-50	168.7	0.0	9.7e-50	168.5	0.0	1.0	1	0	0	1	1	1	1	Telomere	recombination
DUF21	PF01595.20	gi|257052623|ref|YP_003130456.1|	-	2.1e-47	161.1	0.1	3.3e-47	160.4	0.1	1.3	1	0	0	1	1	1	1	Cyclin	M	transmembrane	N-terminal	domain
CorC_HlyC	PF03471.17	gi|257052623|ref|YP_003130456.1|	-	1.1e-20	73.4	1.3	1.1e-20	73.4	1.3	1.8	2	0	0	2	2	2	1	Transporter	associated	domain
CBS	PF00571.28	gi|257052623|ref|YP_003130456.1|	-	2.6e-12	47.0	5.1	2.2e-05	24.8	0.1	3.3	3	0	0	3	3	3	2	CBS	domain
Rrp44_S1	PF17215.3	gi|257052623|ref|YP_003130456.1|	-	0.0039	17.1	0.5	1.6	8.7	0.0	2.6	2	0	0	2	2	2	2	S1	domain
PHO4	PF01384.20	gi|257052624|ref|YP_003130457.1|	-	5.9e-47	160.4	27.5	5.9e-47	160.4	27.5	1.6	1	1	0	1	1	1	1	Phosphate	transporter	family
YscO	PF07321.12	gi|257052625|ref|YP_003130458.1|	-	0.16	11.9	2.6	0.3	11.0	2.5	1.6	1	1	0	1	1	1	0	Type	III	secretion	protein	YscO
UPRTase	PF14681.6	gi|257052626|ref|YP_003130459.1|	-	2.2e-50	171.0	0.0	2.5e-50	170.8	0.0	1.0	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
Pribosyltran	PF00156.27	gi|257052626|ref|YP_003130459.1|	-	2.1e-08	33.9	0.2	3e-08	33.3	0.2	1.2	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
PRTase_2	PF15609.6	gi|257052626|ref|YP_003130459.1|	-	0.081	12.4	0.0	0.12	11.8	0.0	1.5	1	1	0	1	1	1	0	Phosphoribosyl	transferase
PIN	PF01850.21	gi|257052627|ref|YP_003130460.1|	-	5e-12	46.4	0.3	5.9e-12	46.2	0.3	1.0	1	0	0	1	1	1	1	PIN	domain
HTH_IclR	PF09339.10	gi|257052628|ref|YP_003130461.1|	-	1.7e-07	30.9	0.0	2.3e-07	30.5	0.0	1.1	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_20	PF12840.7	gi|257052628|ref|YP_003130461.1|	-	5.6e-07	29.5	0.0	8.6e-07	28.9	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|257052628|ref|YP_003130461.1|	-	0.00011	22.1	0.0	0.00018	21.4	0.0	1.4	1	1	0	1	1	1	1	HTH	domain
MarR_2	PF12802.7	gi|257052628|ref|YP_003130461.1|	-	0.00015	21.6	0.0	0.00021	21.1	0.0	1.2	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|257052628|ref|YP_003130461.1|	-	0.00023	21.0	0.0	0.00031	20.6	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_CodY	PF08222.11	gi|257052628|ref|YP_003130461.1|	-	0.0049	16.4	0.0	0.0072	15.9	0.0	1.2	1	0	0	1	1	1	1	CodY	helix-turn-helix	domain
Ribosomal_S25	PF03297.15	gi|257052628|ref|YP_003130461.1|	-	0.0051	17.0	0.0	0.0072	16.5	0.0	1.1	1	0	0	1	1	1	1	S25	ribosomal	protein
HTH_24	PF13412.6	gi|257052628|ref|YP_003130461.1|	-	0.0056	16.2	0.0	0.011	15.2	0.0	1.5	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_23	PF13384.6	gi|257052628|ref|YP_003130461.1|	-	0.0087	15.8	0.1	0.013	15.3	0.1	1.2	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_28	PF13518.6	gi|257052628|ref|YP_003130461.1|	-	0.022	14.9	0.1	0.027	14.6	0.1	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_17	PF12728.7	gi|257052628|ref|YP_003130461.1|	-	0.04	14.1	0.1	0.072	13.3	0.1	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_Tnp_4	PF13613.6	gi|257052628|ref|YP_003130461.1|	-	0.054	13.2	0.0	0.093	12.5	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	of	DDE	superfamily	endonuclease
MarR	PF01047.22	gi|257052628|ref|YP_003130461.1|	-	0.087	12.8	0.0	0.13	12.2	0.0	1.2	1	0	0	1	1	1	0	MarR	family
HTH_5	PF01022.20	gi|257052628|ref|YP_003130461.1|	-	0.14	12.0	0.0	0.19	11.6	0.0	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
FaeA	PF04703.12	gi|257052628|ref|YP_003130461.1|	-	0.18	12.2	0.0	0.27	11.7	0.0	1.2	1	0	0	1	1	1	0	FaeA-like	protein
UPF0029	PF01205.19	gi|257052629|ref|YP_003130462.1|	-	1.6e-26	92.7	0.0	2.2e-26	92.2	0.0	1.2	1	0	0	1	1	1	1	Uncharacterized	protein	family	UPF0029
DUF1949	PF09186.11	gi|257052629|ref|YP_003130462.1|	-	1.2e-09	37.9	0.1	2.3e-09	37.0	0.1	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1949)
EFG_C	PF00679.24	gi|257052629|ref|YP_003130462.1|	-	0.00012	22.1	0.0	0.0002	21.3	0.0	1.3	1	0	0	1	1	1	1	Elongation	factor	G	C-terminus
DUF2127	PF09900.9	gi|257052630|ref|YP_003130463.1|	-	3.7e-05	24.0	6.4	4.2e-05	23.8	6.4	1.2	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2127)
Cation_ATPase_C	PF00689.21	gi|257052630|ref|YP_003130463.1|	-	0.71	9.6	5.8	0.74	9.5	4.0	1.9	2	1	0	2	2	2	0	Cation	transporting	ATPase,	C-terminus
bPH_2	PF03703.14	gi|257052631|ref|YP_003130464.1|	-	7.8e-07	29.2	0.2	1.3e-06	28.4	0.2	1.4	1	0	0	1	1	1	1	Bacterial	PH	domain
DUF2178	PF09946.9	gi|257052631|ref|YP_003130464.1|	-	0.034	14.3	0.1	0.048	13.8	0.1	1.3	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2178)
MLANA	PF14991.6	gi|257052631|ref|YP_003130464.1|	-	0.059	13.7	0.1	0.097	13.0	0.1	1.4	1	0	0	1	1	1	0	Protein	melan-A
FA_desaturase	PF00487.24	gi|257052631|ref|YP_003130464.1|	-	0.12	12.1	0.8	0.19	11.6	0.8	1.3	1	0	0	1	1	1	0	Fatty	acid	desaturase
UPF0029	PF01205.19	gi|257052633|ref|YP_003130466.1|	-	1.6e-28	99.1	0.0	2.2e-28	98.6	0.0	1.2	1	0	0	1	1	1	1	Uncharacterized	protein	family	UPF0029
DUF1949	PF09186.11	gi|257052633|ref|YP_003130466.1|	-	1.7e-11	43.8	1.0	3.4e-11	42.8	0.1	2.0	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1949)
EFG_C	PF00679.24	gi|257052633|ref|YP_003130466.1|	-	0.00028	20.9	0.0	0.00062	19.7	0.0	1.5	1	0	0	1	1	1	1	Elongation	factor	G	C-terminus
Zn_ribbon_SprT	PF17283.2	gi|257052634|ref|YP_003130467.1|	-	0.0045	16.9	2.8	0.037	13.9	2.7	2.0	1	1	1	2	2	2	1	SprT-like	zinc	ribbon	domain
DUF3268	PF11672.8	gi|257052634|ref|YP_003130467.1|	-	0.0063	16.8	0.1	0.0074	16.6	0.1	1.0	1	0	0	1	1	1	1	zinc-finger-containing	domain
DUF35_N	PF12172.8	gi|257052634|ref|YP_003130467.1|	-	0.0074	16.1	3.5	0.62	10.0	0.4	2.1	2	0	0	2	2	2	2	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
DZR	PF12773.7	gi|257052634|ref|YP_003130467.1|	-	0.0087	16.1	0.4	0.019	15.0	0.4	1.6	1	1	0	1	1	1	1	Double	zinc	ribbon
Rubredoxin_2	PF18073.1	gi|257052634|ref|YP_003130467.1|	-	0.012	15.4	1.5	0.21	11.3	0.2	2.1	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
Terminase_GpA	PF05876.12	gi|257052634|ref|YP_003130467.1|	-	0.013	14.1	0.1	0.013	14.0	0.1	1.0	1	0	0	1	1	1	0	Phage	terminase	large	subunit	(GpA)
Zn-ribbon_8	PF09723.10	gi|257052634|ref|YP_003130467.1|	-	0.013	15.6	1.2	1.7	8.8	0.2	2.1	2	0	0	2	2	2	0	Zinc	ribbon	domain
zinc_ribbon_4	PF13717.6	gi|257052634|ref|YP_003130467.1|	-	0.013	15.4	0.9	4.8	7.2	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|257052634|ref|YP_003130467.1|	-	0.015	14.7	1.7	0.15	11.5	0.1	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|257052634|ref|YP_003130467.1|	-	0.024	14.3	1.2	0.35	10.7	0.1	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
zf_UBZ	PF18439.1	gi|257052634|ref|YP_003130467.1|	-	0.035	13.7	0.8	2.9	7.6	0.1	2.2	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
zinc_ribbon_9	PF14369.6	gi|257052634|ref|YP_003130467.1|	-	0.037	14.3	3.1	4.1	7.7	0.4	2.3	2	1	0	2	2	2	0	zinc-ribbon
Ribosomal_L32p	PF01783.23	gi|257052634|ref|YP_003130467.1|	-	0.057	13.7	1.4	4.1	7.7	0.2	2.1	1	1	1	2	2	2	0	Ribosomal	L32p	protein	family
DUF3797	PF12677.7	gi|257052634|ref|YP_003130467.1|	-	0.065	13.1	0.7	1.1	9.2	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3797)
zf-dskA_traR	PF01258.17	gi|257052634|ref|YP_003130467.1|	-	0.069	13.1	5.1	0.12	12.3	2.2	2.1	2	0	0	2	2	2	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
CpXC	PF14353.6	gi|257052634|ref|YP_003130467.1|	-	0.07	13.2	1.0	4.6	7.3	0.0	2.0	1	1	1	2	2	2	0	CpXC	protein
zf-ACC	PF17848.1	gi|257052634|ref|YP_003130467.1|	-	0.081	13.0	0.5	4.9	7.3	0.1	2.2	2	0	0	2	2	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
zf-CCHC_5	PF14787.6	gi|257052634|ref|YP_003130467.1|	-	0.15	11.7	1.3	0.15	11.7	1.3	1.9	2	0	0	2	2	2	0	GAG-polyprotein	viral	zinc-finger
zinc_ribbon_5	PF13719.6	gi|257052634|ref|YP_003130467.1|	-	0.26	11.1	2.1	12	5.8	0.2	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-TFIIB	PF13453.6	gi|257052634|ref|YP_003130467.1|	-	0.71	9.2	4.2	2.4	7.5	4.2	1.8	1	1	1	2	2	2	0	Transcription	factor	zinc-finger
DNA_ligase_ZBD	PF03119.16	gi|257052634|ref|YP_003130467.1|	-	2.8	8.0	9.2	6.3	6.9	1.6	3.2	2	1	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
Iron_transport	PF10634.9	gi|257052635|ref|YP_003130468.1|	-	0.00069	19.8	0.0	0.024	14.8	0.0	2.6	2	1	1	3	3	3	1	Fe2+	transport	protein
TAT_signal	PF10518.9	gi|257052636|ref|YP_003130469.1|	-	3.6e-05	23.4	0.1	6.7e-05	22.6	0.1	1.4	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
CBM60	PF16841.5	gi|257052637|ref|YP_003130470.1|	-	0.1	13.0	5.7	0.65	10.5	1.1	3.2	2	1	1	3	3	3	0	Ca-dependent	carbohydrate-binding	module	xylan-binding
DUF5110	PF17137.4	gi|257052637|ref|YP_003130470.1|	-	0.16	12.3	1.0	51	4.3	0.0	3.7	4	0	0	4	4	4	0	Domain	of	unknown	function	(DUF5110)
FlgD_ig	PF13860.6	gi|257052637|ref|YP_003130470.1|	-	0.19	11.7	6.6	2	8.3	0.1	3.2	2	1	0	2	2	2	0	FlgD	Ig-like	domain
Big_4	PF07532.11	gi|257052637|ref|YP_003130470.1|	-	0.19	11.5	3.3	0.54	10.0	0.3	2.7	2	0	0	2	2	2	0	Bacterial	Ig-like	domain	(group	4)
IPTL-CTERM	PF18203.1	gi|257052637|ref|YP_003130470.1|	-	0.59	10.1	3.8	1.1	9.2	3.8	1.5	1	0	0	1	1	1	0	IPTL-CTERM	motif
DUF2244	PF10003.9	gi|257052638|ref|YP_003130471.1|	-	1	9.0	4.8	1.3	8.7	4.8	1.2	1	0	0	1	1	1	0	Integral	membrane	protein	(DUF2244)
DUF1349	PF07081.11	gi|257052639|ref|YP_003130472.1|	-	3.2e-65	219.2	0.6	3.5e-65	219.1	0.6	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1349)
GH43_C2	PF17851.1	gi|257052639|ref|YP_003130472.1|	-	1.4e-06	28.2	0.0	1.7e-06	27.9	0.0	1.2	1	0	0	1	1	1	1	Beta	xylosidase	C-terminal	Concanavalin	A-like	domain
Methyltransf_11	PF08241.12	gi|257052640|ref|YP_003130473.1|	-	1.6e-21	76.7	0.0	3.6e-21	75.6	0.0	1.6	1	1	1	2	2	2	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|257052640|ref|YP_003130473.1|	-	9.5e-20	71.1	0.1	2e-19	70.1	0.0	1.6	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|257052640|ref|YP_003130473.1|	-	9.2e-19	67.9	0.0	1.1e-18	67.6	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|257052640|ref|YP_003130473.1|	-	1.1e-12	48.5	0.0	2.1e-12	47.6	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|257052640|ref|YP_003130473.1|	-	3.6e-12	46.3	0.0	5.1e-12	45.8	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|257052640|ref|YP_003130473.1|	-	2.7e-11	43.2	0.0	3.8e-11	42.8	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
MTS	PF05175.14	gi|257052640|ref|YP_003130473.1|	-	0.0017	18.0	0.0	0.0027	17.3	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	small	domain
MetW	PF07021.12	gi|257052640|ref|YP_003130473.1|	-	0.0063	16.1	0.0	0.0092	15.6	0.0	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Methyltransf_29	PF03141.16	gi|257052640|ref|YP_003130473.1|	-	0.047	12.2	0.0	0.055	12.0	0.0	1.1	1	0	0	1	1	1	0	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
DREV	PF05219.12	gi|257052640|ref|YP_003130473.1|	-	0.2	10.7	0.0	0.27	10.3	0.0	1.2	1	0	0	1	1	1	0	DREV	methyltransferase
Response_reg	PF00072.24	gi|257052642|ref|YP_003130475.1|	-	3.4e-27	94.8	0.0	3.8e-27	94.7	0.0	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
FleQ	PF06490.11	gi|257052642|ref|YP_003130475.1|	-	0.14	12.5	0.0	0.2	12.0	0.0	1.4	1	1	0	1	1	1	0	Flagellar	regulatory	protein	FleQ
LUD_dom	PF02589.15	gi|257052642|ref|YP_003130475.1|	-	0.15	11.8	0.0	0.16	11.7	0.0	1.1	1	0	0	1	1	1	0	LUD	domain
HEAT_2	PF13646.6	gi|257052643|ref|YP_003130476.1|	-	3.8e-14	52.8	6.2	8.7e-11	42.1	0.6	3.5	3	2	1	4	4	4	2	HEAT	repeats
HEAT	PF02985.22	gi|257052643|ref|YP_003130476.1|	-	0.00023	21.1	0.4	1.7	9.1	0.1	3.4	3	0	0	3	3	3	2	HEAT	repeat
HEAT_EZ	PF13513.6	gi|257052643|ref|YP_003130476.1|	-	0.0045	17.5	0.9	0.37	11.3	0.2	3.6	4	0	0	4	4	4	1	HEAT-like	repeat
HEAT_PBS	PF03130.16	gi|257052643|ref|YP_003130476.1|	-	0.043	14.5	5.2	0.069	13.9	1.1	3.4	4	0	0	4	4	4	0	PBS	lyase	HEAT-like	repeat
ATP-synt_B	PF00430.18	gi|257052643|ref|YP_003130476.1|	-	0.071	13.2	0.0	0.17	11.9	0.0	1.6	1	0	0	1	1	1	0	ATP	synthase	B/B'	CF(0)
Glyco_tranf_2_3	PF13641.6	gi|257052644|ref|YP_003130477.1|	-	8e-25	88.1	0.1	2.7e-23	83.1	0.1	2.1	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glycos_transf_2	PF00535.26	gi|257052644|ref|YP_003130477.1|	-	1.1e-19	70.8	0.4	6.5e-19	68.4	0.3	2.2	2	1	0	2	2	2	1	Glycosyl	transferase	family	2
Glyco_trans_2_3	PF13632.6	gi|257052644|ref|YP_003130477.1|	-	3.6e-16	59.7	2.3	2.4e-15	57.0	2.3	2.1	1	1	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glyco_transf_21	PF13506.6	gi|257052644|ref|YP_003130477.1|	-	4.2e-08	32.9	0.0	4.3e-07	29.6	0.0	2.1	1	1	0	1	1	1	1	Glycosyl	transferase	family	21
Glyco_tranf_2_2	PF10111.9	gi|257052644|ref|YP_003130477.1|	-	5.7e-05	22.7	0.1	0.00057	19.4	0.1	2.1	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Chitin_synth_2	PF03142.15	gi|257052644|ref|YP_003130477.1|	-	0.00014	20.7	2.8	0.0054	15.4	0.1	2.6	3	0	0	3	3	3	2	Chitin	synthase
Glyco_tranf_2_4	PF13704.6	gi|257052644|ref|YP_003130477.1|	-	0.0075	16.8	0.0	0.016	15.7	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
DUF4519	PF15012.6	gi|257052644|ref|YP_003130477.1|	-	0.23	11.6	0.9	1.6	9.0	0.0	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4519)
HisKA	PF00512.25	gi|257052645|ref|YP_003130478.1|	-	2e-14	53.4	1.3	1.7e-13	50.3	0.2	2.4	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c	PF02518.26	gi|257052645|ref|YP_003130478.1|	-	1.2e-13	51.5	0.0	2.3e-13	50.6	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
GAF	PF01590.26	gi|257052645|ref|YP_003130478.1|	-	6.6e-11	43.0	0.0	1.2e-10	42.1	0.0	1.5	1	0	0	1	1	1	1	GAF	domain
GAF_2	PF13185.6	gi|257052645|ref|YP_003130478.1|	-	1.1e-08	35.4	0.1	3e-08	34.1	0.1	1.8	1	0	0	1	1	1	1	GAF	domain
GAF_3	PF13492.6	gi|257052645|ref|YP_003130478.1|	-	3.1e-05	24.3	0.0	6.9e-05	23.2	0.0	1.7	1	0	0	1	1	1	1	GAF	domain
RBD-FIP	PF09457.10	gi|257052645|ref|YP_003130478.1|	-	0.1	12.5	0.0	0.23	11.4	0.0	1.5	1	0	0	1	1	1	0	FIP	domain
PAS_4	PF08448.10	gi|257052646|ref|YP_003130479.1|	-	7.6e-41	138.8	9.6	6.4e-14	52.1	0.4	4.1	4	0	0	4	4	4	3	PAS	fold
PAS	PF00989.25	gi|257052646|ref|YP_003130479.1|	-	2e-28	98.7	1.0	4.6e-16	58.8	0.1	4.5	4	1	0	4	4	4	3	PAS	fold
PAS_9	PF13426.7	gi|257052646|ref|YP_003130479.1|	-	1.1e-22	80.2	0.2	2.5e-13	50.2	0.0	3.8	3	0	0	3	3	3	3	PAS	domain
HATPase_c	PF02518.26	gi|257052646|ref|YP_003130479.1|	-	1.4e-17	64.2	0.3	2.9e-17	63.2	0.3	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Response_reg	PF00072.24	gi|257052646|ref|YP_003130479.1|	-	2.4e-14	53.4	0.1	7.9e-14	51.8	0.0	1.9	2	0	0	2	2	2	1	Response	regulator	receiver	domain
PAS_8	PF13188.7	gi|257052646|ref|YP_003130479.1|	-	4.2e-14	52.2	3.6	9.3e-07	28.7	0.0	4.6	4	1	0	4	4	4	3	PAS	domain
HisKA	PF00512.25	gi|257052646|ref|YP_003130479.1|	-	1.6e-12	47.2	0.1	1.6e-12	47.2	0.1	3.2	4	0	0	4	4	4	1	His	Kinase	A	(phospho-acceptor)	domain
GAF_2	PF13185.6	gi|257052646|ref|YP_003130479.1|	-	1.9e-12	47.6	0.3	1.9e-12	47.6	0.3	3.3	5	0	0	5	5	4	1	GAF	domain
PAS_3	PF08447.12	gi|257052646|ref|YP_003130479.1|	-	7.3e-10	39.0	0.1	1.7e-07	31.4	0.0	3.7	3	0	0	3	3	3	1	PAS	fold
GAF_3	PF13492.6	gi|257052646|ref|YP_003130479.1|	-	1.8e-08	34.8	0.0	2.4e-07	31.1	0.0	2.9	3	0	0	3	3	3	1	GAF	domain
GAF	PF01590.26	gi|257052646|ref|YP_003130479.1|	-	0.00014	22.5	0.0	0.0015	19.2	0.0	2.8	3	0	0	3	3	3	1	GAF	domain
PAS_10	PF13596.6	gi|257052646|ref|YP_003130479.1|	-	0.031	14.9	0.0	0.15	12.6	0.0	2.2	2	0	0	2	2	2	0	PAS	domain
HATPase_c_3	PF13589.6	gi|257052646|ref|YP_003130479.1|	-	0.058	13.2	0.0	0.13	12.1	0.0	1.5	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_7	PF12860.7	gi|257052646|ref|YP_003130479.1|	-	0.11	12.6	0.1	2.5	8.3	0.0	3.4	3	1	0	3	3	3	0	PAS	fold
TetR_C_15	PF17918.1	gi|257052646|ref|YP_003130479.1|	-	0.89	10.3	10.4	1.3	9.8	0.4	4.4	3	1	1	4	4	4	0	Tetracyclin	repressor-like,	C-terminal	domain
Hemerythrin	PF01814.23	gi|257052646|ref|YP_003130479.1|	-	9.9	6.8	8.9	1.3	9.6	1.6	3.2	3	0	0	3	3	3	0	Hemerythrin	HHE	cation	binding	domain
Pyr_redox_2	PF07992.14	gi|257052648|ref|YP_003130481.1|	-	8e-12	45.0	5.4	2e-05	24.0	0.3	2.1	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|257052648|ref|YP_003130481.1|	-	3.2e-08	33.1	4.8	5.1e-06	25.8	0.5	2.6	3	0	0	3	3	3	2	FAD	binding	domain
HI0933_like	PF03486.14	gi|257052648|ref|YP_003130481.1|	-	1.1e-06	27.7	0.2	0.0033	16.2	0.2	2.2	2	0	0	2	2	2	2	HI0933-like	protein
Lycopene_cycl	PF05834.12	gi|257052648|ref|YP_003130481.1|	-	1.2e-05	24.6	0.4	0.0043	16.2	0.1	2.1	2	0	0	2	2	2	2	Lycopene	cyclase	protein
DAO	PF01266.24	gi|257052648|ref|YP_003130481.1|	-	1.2e-05	25.0	11.1	0.0026	17.4	2.8	2.9	1	1	1	3	3	3	2	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.6	gi|257052648|ref|YP_003130481.1|	-	4.4e-05	23.6	0.6	0.00092	19.4	0.1	2.4	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
FAD_oxidored	PF12831.7	gi|257052648|ref|YP_003130481.1|	-	0.00012	21.5	2.1	0.00021	20.8	2.1	1.4	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.6	gi|257052648|ref|YP_003130481.1|	-	0.00015	21.2	2.3	0.0021	17.4	2.3	2.4	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|257052648|ref|YP_003130481.1|	-	0.00017	20.8	0.9	0.00027	20.2	0.6	1.4	1	1	0	1	1	1	1	Glucose	inhibited	division	protein	A
AlaDh_PNT_C	PF01262.21	gi|257052648|ref|YP_003130481.1|	-	0.00031	20.1	0.2	0.00043	19.6	0.2	1.3	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
FAD_binding_3	PF01494.19	gi|257052648|ref|YP_003130481.1|	-	0.00058	19.2	4.0	0.00091	18.6	0.9	2.0	1	1	1	2	2	2	1	FAD	binding	domain
3HCDH_N	PF02737.18	gi|257052648|ref|YP_003130481.1|	-	0.0026	17.7	0.1	0.004	17.1	0.1	1.5	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Pyr_redox	PF00070.27	gi|257052648|ref|YP_003130481.1|	-	0.0031	18.0	0.8	0.01	16.3	0.3	2.1	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.17	gi|257052648|ref|YP_003130481.1|	-	0.0084	15.4	0.7	0.017	14.4	0.2	1.7	2	0	0	2	2	2	1	Thi4	family
NAD_binding_9	PF13454.6	gi|257052648|ref|YP_003130481.1|	-	0.012	15.6	3.2	0.054	13.5	0.2	2.8	3	0	0	3	3	3	0	FAD-NAD(P)-binding
Trp_halogenase	PF04820.14	gi|257052648|ref|YP_003130481.1|	-	0.13	11.1	1.3	1.3	7.7	0.2	2.0	2	0	0	2	2	2	0	Tryptophan	halogenase
GPW_gp25	PF04965.14	gi|257052649|ref|YP_003130482.1|	-	0.074	12.8	0.3	0.25	11.1	0.0	2.0	2	0	0	2	2	2	0	Gene	25-like	lysozyme
KfrA_N	PF11740.8	gi|257052650|ref|YP_003130483.1|	-	2.1	9.1	11.3	8.6	7.1	3.2	2.6	3	0	0	3	3	3	0	Plasmid	replication	region	DNA-binding	N-term
DUF883	PF05957.13	gi|257052650|ref|YP_003130483.1|	-	8	7.1	9.9	16	6.2	0.5	3.3	2	2	1	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF883)
Usp	PF00582.26	gi|257052651|ref|YP_003130484.1|	-	3.3e-07	30.9	2.6	1.9e-06	28.4	0.8	2.4	2	1	0	2	2	2	1	Universal	stress	protein	family
DUF463	PF04317.12	gi|257052651|ref|YP_003130484.1|	-	0.043	12.8	0.7	0.057	12.3	0.7	1.1	1	0	0	1	1	1	0	YcjX-like	family,	DUF463
AA_permease	PF00324.21	gi|257052652|ref|YP_003130485.1|	-	2.6e-46	158.2	37.4	3.3e-46	157.9	37.4	1.1	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease_2	PF13520.6	gi|257052652|ref|YP_003130485.1|	-	3.4e-43	148.1	37.2	4.2e-43	147.7	37.2	1.1	1	0	0	1	1	1	1	Amino	acid	permease
Spore_permease	PF03845.13	gi|257052652|ref|YP_003130485.1|	-	5.1e-08	32.1	10.7	5.1e-08	32.1	10.7	2.2	2	0	0	2	2	2	1	Spore	germination	protein
AA_permease_C	PF13906.6	gi|257052652|ref|YP_003130485.1|	-	0.011	15.8	0.9	0.011	15.8	0.9	2.8	3	0	0	3	3	3	0	C-terminus	of	AA_permease
PHO4	PF01384.20	gi|257052653|ref|YP_003130486.1|	-	3.2e-42	144.8	26.1	4.6e-42	144.3	26.1	1.2	1	0	0	1	1	1	1	Phosphate	transporter	family
NadA	PF02445.16	gi|257052654|ref|YP_003130487.1|	-	4.6e-105	351.1	0.0	5.2e-105	350.9	0.0	1.0	1	0	0	1	1	1	1	Quinolinate	synthetase	A	protein
FAD_binding_2	PF00890.24	gi|257052655|ref|YP_003130488.1|	-	4.1e-74	250.1	14.4	5.4e-72	243.1	2.1	2.3	2	0	0	2	2	2	2	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|257052655|ref|YP_003130488.1|	-	1.5e-08	34.3	0.0	0.0034	16.6	0.0	2.9	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
Succ_DH_flav_C	PF02910.20	gi|257052655|ref|YP_003130488.1|	-	8.4e-06	25.8	0.1	2e-05	24.6	0.1	1.6	1	0	0	1	1	1	1	Fumarate	reductase	flavoprotein	C-term
GIDA	PF01134.22	gi|257052655|ref|YP_003130488.1|	-	0.00013	21.2	1.9	0.056	12.5	3.7	2.3	2	0	0	2	2	2	2	Glucose	inhibited	division	protein	A
FAD_oxidored	PF12831.7	gi|257052655|ref|YP_003130488.1|	-	0.0019	17.6	9.6	0.0088	15.4	3.2	2.7	3	1	0	3	3	3	2	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.6	gi|257052655|ref|YP_003130488.1|	-	0.04	14.2	2.4	0.08	13.2	1.8	1.9	1	1	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
AlaDh_PNT_C	PF01262.21	gi|257052655|ref|YP_003130488.1|	-	0.073	12.4	0.1	0.13	11.6	0.1	1.4	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Ins134_P3_kin_N	PF17927.1	gi|257052655|ref|YP_003130488.1|	-	0.074	13.5	0.0	2.3	8.7	0.0	2.8	3	0	0	3	3	3	0	Inositol	1,3,4-trisphosphate	5/6-kinase	pre-ATP-grasp	domain
DUF3640	PF12342.8	gi|257052655|ref|YP_003130488.1|	-	0.078	12.7	1.2	0.42	10.4	0.1	3.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3640)
DAO	PF01266.24	gi|257052655|ref|YP_003130488.1|	-	0.17	11.4	11.2	1.1	8.8	10.1	2.9	1	1	1	2	2	2	0	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|257052655|ref|YP_003130488.1|	-	0.35	9.5	2.7	11	4.6	0.0	2.4	2	0	0	2	2	2	0	HI0933-like	protein
QRPTase_C	PF01729.19	gi|257052656|ref|YP_003130489.1|	-	1.5e-55	187.5	2.1	1.9e-55	187.2	2.1	1.1	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
QRPTase_N	PF02749.16	gi|257052656|ref|YP_003130489.1|	-	1.9e-19	69.5	0.0	4.1e-19	68.4	0.0	1.6	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
Ribul_P_3_epim	PF00834.19	gi|257052656|ref|YP_003130489.1|	-	0.0096	15.3	1.0	0.085	12.2	0.1	2.2	1	1	0	2	2	2	1	Ribulose-phosphate	3	epimerase	family
zf_C2H2_ZHX	PF18387.1	gi|257052657|ref|YP_003130490.1|	-	0.025	14.2	0.3	0.051	13.2	0.3	1.5	1	1	0	1	1	1	0	Zinc-fingers	and	homeoboxes	C2H2	finger	domain
TauE	PF01925.19	gi|257052658|ref|YP_003130491.1|	-	1.7e-14	54.1	28.2	1.7e-14	54.1	28.2	1.5	1	1	0	1	1	1	1	Sulfite	exporter	TauE/SafE
YbjQ_1	PF01906.17	gi|257052659|ref|YP_003130492.1|	-	5.9e-37	126.5	1.4	6.4e-37	126.4	1.4	1.0	1	0	0	1	1	1	1	Putative	heavy-metal-binding
SeleniumBinding	PF11524.8	gi|257052659|ref|YP_003130492.1|	-	0.02	15.3	0.2	0.1	13.0	0.1	1.9	1	1	1	2	2	2	0	Selenium	binding	protein
Pan_kinase	PF03309.14	gi|257052659|ref|YP_003130492.1|	-	0.047	13.5	0.0	0.048	13.5	0.0	1.1	1	0	0	1	1	1	0	Type	III	pantothenate	kinase
AI-2E_transport	PF01594.16	gi|257052660|ref|YP_003130493.1|	-	2.1	7.4	9.6	0.016	14.4	1.5	1.4	2	0	0	2	2	2	0	AI-2E	family	transporter
Peptidase_M48	PF01435.18	gi|257052661|ref|YP_003130494.1|	-	7.1e-39	133.6	0.3	9.2e-39	133.2	0.3	1.1	1	0	0	1	1	1	1	Peptidase	family	M48
Peptidase_M56	PF05569.11	gi|257052661|ref|YP_003130494.1|	-	1.2e-08	34.5	0.1	5.4e-08	32.4	0.0	1.9	2	0	0	2	2	2	1	BlaR1	peptidase	M56
DUF45	PF01863.17	gi|257052661|ref|YP_003130494.1|	-	0.012	15.7	0.0	0.018	15.1	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF45
SprT-like	PF10263.9	gi|257052661|ref|YP_003130494.1|	-	0.026	14.4	0.0	0.041	13.7	0.0	1.3	1	0	0	1	1	1	0	SprT-like	family
DUF2976	PF11190.8	gi|257052661|ref|YP_003130494.1|	-	6.3	6.7	10.9	1.1	9.1	2.6	2.6	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2976)
iPGM_N	PF06415.13	gi|257052662|ref|YP_003130495.1|	-	5.9e-81	271.0	0.6	7.9e-81	270.6	0.6	1.2	1	0	0	1	1	1	1	BPG-independent	PGAM	N-terminus	(iPGM_N)
Metalloenzyme	PF01676.18	gi|257052662|ref|YP_003130495.1|	-	6.5e-64	215.7	0.4	3.3e-31	108.5	0.2	1.9	2	0	0	2	2	2	2	Metalloenzyme	superfamily
Phosphodiest	PF01663.22	gi|257052662|ref|YP_003130495.1|	-	1.3e-07	31.6	0.1	2.7e-07	30.5	0.1	1.6	1	0	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Sulfatase	PF00884.23	gi|257052662|ref|YP_003130495.1|	-	0.00038	20.0	0.2	0.0012	18.3	0.0	2.1	2	1	0	2	2	2	1	Sulfatase
PglZ	PF08665.12	gi|257052662|ref|YP_003130495.1|	-	0.0072	16.4	0.1	0.016	15.3	0.1	1.5	1	0	0	1	1	1	1	PglZ	domain
MFS_1_like	PF12832.7	gi|257052663|ref|YP_003130496.1|	-	7.9e-31	107.3	26.1	1.2e-30	106.7	26.1	1.2	1	0	0	1	1	1	1	MFS_1	like	family
MFS_1	PF07690.16	gi|257052663|ref|YP_003130496.1|	-	1.2e-20	73.8	72.4	9.4e-20	70.8	45.9	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Nuc_H_symport	PF03825.16	gi|257052663|ref|YP_003130496.1|	-	1.6e-06	27.4	27.1	2e-06	27.0	27.1	1.1	1	0	0	1	1	1	1	Nucleoside	H+	symporter
NurA	PF09376.10	gi|257052664|ref|YP_003130497.1|	-	5.5e-17	62.3	0.0	6.9e-17	62.0	0.0	1.1	1	0	0	1	1	1	1	NurA	domain
zf-RRN7	PF11781.8	gi|257052665|ref|YP_003130498.1|	-	0.00014	21.4	3.0	0.18	11.5	0.5	2.1	2	0	0	2	2	2	2	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
HalOD2	PF18547.1	gi|257052665|ref|YP_003130498.1|	-	0.0013	18.6	2.2	0.0055	16.6	0.3	2.1	2	0	0	2	2	2	1	Halobacterial	output	domain	2
Zn-ribbon_8	PF09723.10	gi|257052665|ref|YP_003130498.1|	-	0.0058	16.7	1.2	0.0082	16.2	1.2	1.3	1	0	0	1	1	1	1	Zinc	ribbon	domain
zf-FPG_IleRS	PF06827.14	gi|257052665|ref|YP_003130498.1|	-	0.0078	16.0	0.4	0.23	11.3	0.0	2.1	2	0	0	2	2	2	1	Zinc	finger	found	in	FPG	and	IleRS
GATA	PF00320.27	gi|257052665|ref|YP_003130498.1|	-	0.025	14.2	1.7	0.044	13.4	1.7	1.5	1	0	0	1	1	1	0	GATA	zinc	finger
Desulfoferrod_N	PF06397.12	gi|257052665|ref|YP_003130498.1|	-	0.033	13.8	2.8	3.8	7.2	0.0	2.2	2	0	0	2	2	2	0	Desulfoferrodoxin,	N-terminal	domain
YhfH	PF14149.6	gi|257052665|ref|YP_003130498.1|	-	0.04	13.9	3.3	1.7	8.7	0.1	2.1	2	0	0	2	2	2	0	YhfH-like	protein
Methyltransf_13	PF08421.11	gi|257052665|ref|YP_003130498.1|	-	0.054	13.7	1.1	1.1	9.5	0.1	2.1	2	0	0	2	2	2	0	Putative	zinc	binding	domain
ZZ	PF00569.17	gi|257052665|ref|YP_003130498.1|	-	0.093	12.6	1.3	5.9	6.8	0.1	2.1	2	0	0	2	2	2	0	Zinc	finger,	ZZ	type
zf-C2H2_4	PF13894.6	gi|257052665|ref|YP_003130498.1|	-	0.1	13.5	1.3	7.7	7.7	0.1	2.3	2	0	0	2	2	2	0	C2H2-type	zinc	finger
DUF4379	PF14311.6	gi|257052665|ref|YP_003130498.1|	-	0.13	12.6	3.4	0.35	11.3	3.3	1.7	1	1	1	2	2	2	0	Probable	Zinc-ribbon	domain
zinc_ribbon_13	PF09855.9	gi|257052665|ref|YP_003130498.1|	-	0.23	11.6	2.1	1.4	9.2	0.1	2.0	2	0	0	2	2	2	0	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
Rubredoxin_2	PF18073.1	gi|257052665|ref|YP_003130498.1|	-	0.26	11.1	4.8	1.4	8.7	0.6	2.2	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
zf-RanBP	PF00641.18	gi|257052665|ref|YP_003130498.1|	-	0.41	10.0	5.6	1.4	8.3	1.8	2.1	2	0	0	2	2	2	0	Zn-finger	in	Ran	binding	protein	and	others
Zn_ribbon_SprT	PF17283.2	gi|257052665|ref|YP_003130498.1|	-	0.52	10.3	3.8	1.3	9.0	3.8	1.8	1	1	0	1	1	1	0	SprT-like	zinc	ribbon	domain
PADR1	PF08063.12	gi|257052665|ref|YP_003130498.1|	-	0.67	9.8	4.5	1.2	9.0	0.3	2.1	1	1	1	2	2	2	0	PADR1	(NUC008)	domain
HisKA_7TM	PF16927.5	gi|257052666|ref|YP_003130499.1|	-	4e-20	72.8	20.8	5.4e-20	72.4	20.8	1.1	1	0	0	1	1	1	1	N-terminal	7TM	region	of	histidine	kinase
HATPase_c	PF02518.26	gi|257052666|ref|YP_003130499.1|	-	5.4e-13	49.4	0.0	1.1e-11	45.2	0.0	2.5	1	1	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|257052666|ref|YP_003130499.1|	-	5.2e-12	45.6	2.0	1.1e-11	44.5	2.0	1.6	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_4	PF08448.10	gi|257052666|ref|YP_003130499.1|	-	3.1e-07	30.6	1.4	8.9e-06	25.9	1.4	2.8	1	1	0	1	1	1	1	PAS	fold
HATPase_c_2	PF13581.6	gi|257052666|ref|YP_003130499.1|	-	0.00081	19.3	2.1	0.0019	18.1	0.1	2.6	3	0	0	3	3	3	1	Histidine	kinase-like	ATPase	domain
PAS_8	PF13188.7	gi|257052666|ref|YP_003130499.1|	-	0.0029	17.6	0.2	0.015	15.3	0.0	2.3	2	0	0	2	2	2	1	PAS	domain
PAS	PF00989.25	gi|257052666|ref|YP_003130499.1|	-	0.099	12.7	0.1	5.9	6.9	0.0	2.6	2	0	0	2	2	2	0	PAS	fold
Glu_cys_ligase	PF04262.14	gi|257052666|ref|YP_003130499.1|	-	0.12	11.0	0.3	0.18	10.4	0.3	1.2	1	0	0	1	1	1	0	Glutamate-cysteine	ligase
PAS_9	PF13426.7	gi|257052666|ref|YP_003130499.1|	-	0.17	12.2	0.0	0.87	9.9	0.0	2.2	1	1	0	1	1	1	0	PAS	domain
PBP_like_2	PF12849.7	gi|257052667|ref|YP_003130500.1|	-	4.3e-20	72.5	4.7	7.7e-20	71.7	2.2	2.3	1	1	1	2	2	2	1	PBP	superfamily	domain
PBP_like	PF12727.7	gi|257052667|ref|YP_003130500.1|	-	3.4e-08	32.8	0.0	5.8e-08	32.1	0.0	1.3	1	0	0	1	1	1	1	PBP	superfamily	domain
TAT_signal	PF10518.9	gi|257052667|ref|YP_003130500.1|	-	0.19	11.6	5.1	0.34	10.8	5.1	1.3	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
BPD_transp_1	PF00528.22	gi|257052668|ref|YP_003130501.1|	-	7.1e-17	61.7	11.0	7.1e-17	61.7	11.0	2.7	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
Methyltrn_RNA_4	PF09936.9	gi|257052668|ref|YP_003130501.1|	-	0.36	10.7	1.2	1.7	8.5	0.2	2.1	2	0	0	2	2	2	0	SAM-dependent	RNA	methyltransferase
BPD_transp_1	PF00528.22	gi|257052669|ref|YP_003130502.1|	-	4.3e-19	69.0	11.5	4.3e-19	69.0	11.5	5.9	2	1	4	6	6	6	1	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.27	gi|257052670|ref|YP_003130503.1|	-	1e-31	110.3	0.0	1.6e-31	109.6	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|257052670|ref|YP_003130503.1|	-	1.6e-11	44.6	0.0	1.6e-05	24.8	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|257052670|ref|YP_003130503.1|	-	2.5e-09	36.9	0.2	7.3e-08	32.1	0.2	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.6	gi|257052670|ref|YP_003130503.1|	-	1e-07	32.0	0.0	6.9e-07	29.3	0.0	1.9	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|257052670|ref|YP_003130503.1|	-	1.6e-05	25.2	0.0	5.4e-05	23.5	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_25	PF13481.6	gi|257052670|ref|YP_003130503.1|	-	9.3e-05	22.1	0.2	0.0086	15.7	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|257052670|ref|YP_003130503.1|	-	0.00029	20.8	0.0	0.00073	19.5	0.0	1.6	2	0	0	2	2	1	1	RsgA	GTPase
AAA_29	PF13555.6	gi|257052670|ref|YP_003130503.1|	-	0.00046	19.9	0.0	0.001	18.8	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|257052670|ref|YP_003130503.1|	-	0.00049	20.5	0.4	0.0014	19.0	0.3	1.8	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_30	PF13604.6	gi|257052670|ref|YP_003130503.1|	-	0.0061	16.3	0.3	0.29	10.8	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
DeoRC	PF00455.22	gi|257052670|ref|YP_003130503.1|	-	0.0066	16.4	0.0	0.011	15.7	0.0	1.3	1	0	0	1	1	1	1	DeoR	C	terminal	sensor	domain
Rad17	PF03215.15	gi|257052670|ref|YP_003130503.1|	-	0.0078	16.1	0.0	0.015	15.2	0.0	1.5	1	0	0	1	1	1	1	Rad17	P-loop	domain
AAA_23	PF13476.6	gi|257052670|ref|YP_003130503.1|	-	0.0082	16.7	0.0	0.017	15.6	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_18	PF13238.6	gi|257052670|ref|YP_003130503.1|	-	0.011	16.3	0.1	0.056	14.0	0.0	2.2	2	1	1	3	3	3	0	AAA	domain
G-alpha	PF00503.20	gi|257052670|ref|YP_003130503.1|	-	0.014	14.6	0.0	0.029	13.5	0.0	1.5	1	1	0	1	1	1	0	G-protein	alpha	subunit
AAA_33	PF13671.6	gi|257052670|ref|YP_003130503.1|	-	0.014	15.5	0.0	0.05	13.8	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
PRK	PF00485.18	gi|257052670|ref|YP_003130503.1|	-	0.023	14.4	0.0	0.05	13.3	0.0	1.6	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
AAA	PF00004.29	gi|257052670|ref|YP_003130503.1|	-	0.028	14.8	0.0	0.22	12.0	0.0	2.3	3	1	0	3	3	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
RNA_helicase	PF00910.22	gi|257052670|ref|YP_003130503.1|	-	0.053	13.9	0.0	0.18	12.2	0.0	1.9	2	0	0	2	2	1	0	RNA	helicase
AAA_28	PF13521.6	gi|257052670|ref|YP_003130503.1|	-	0.059	13.6	0.0	0.25	11.6	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
cobW	PF02492.19	gi|257052670|ref|YP_003130503.1|	-	0.062	12.9	0.0	0.26	10.8	0.0	1.8	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
MMR_HSR1	PF01926.23	gi|257052670|ref|YP_003130503.1|	-	0.063	13.4	0.0	0.19	11.8	0.0	1.8	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
NB-ARC	PF00931.22	gi|257052670|ref|YP_003130503.1|	-	0.069	12.3	0.0	0.087	12.0	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
PPV_E1_C	PF00519.17	gi|257052670|ref|YP_003130503.1|	-	0.07	11.9	0.0	0.11	11.4	0.0	1.1	1	0	0	1	1	1	0	Papillomavirus	helicase
NACHT	PF05729.12	gi|257052670|ref|YP_003130503.1|	-	0.075	13.0	0.0	0.15	12.0	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
AAA_24	PF13479.6	gi|257052670|ref|YP_003130503.1|	-	0.076	12.7	0.0	0.21	11.3	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
NYN_YacP	PF05991.11	gi|257052670|ref|YP_003130503.1|	-	0.11	12.4	0.1	0.22	11.5	0.1	1.4	1	0	0	1	1	1	0	YacP-like	NYN	domain
AAA_5	PF07728.14	gi|257052670|ref|YP_003130503.1|	-	0.12	12.4	0.0	0.26	11.3	0.0	1.5	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
Adeno_IVa2	PF02456.15	gi|257052670|ref|YP_003130503.1|	-	0.18	10.6	0.0	2.1	7.1	0.0	2.0	2	0	0	2	2	2	0	Adenovirus	IVa2	protein
PhoU	PF01895.19	gi|257052671|ref|YP_003130504.1|	-	5.5e-37	126.1	11.4	2.9e-20	72.5	1.5	2.1	2	0	0	2	2	2	2	PhoU	domain
MazE_antitoxin	PF04014.18	gi|257052672|ref|YP_003130505.1|	-	9.4e-06	25.4	0.0	2e-05	24.4	0.0	1.5	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
DUF21	PF01595.20	gi|257052673|ref|YP_003130506.1|	-	4.5e-31	107.9	0.1	6.3e-31	107.4	0.1	1.1	1	0	0	1	1	1	1	Cyclin	M	transmembrane	N-terminal	domain
CBS	PF00571.28	gi|257052673|ref|YP_003130506.1|	-	1.8e-10	41.1	0.2	1.9e-08	34.6	0.1	2.4	2	0	0	2	2	2	2	CBS	domain
Radical_SAM	PF04055.21	gi|257052674|ref|YP_003130507.1|	-	5.3e-21	75.7	0.0	6.4e-21	75.4	0.0	1.1	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|257052674|ref|YP_003130507.1|	-	6.1e-13	49.2	0.0	8.5e-13	48.8	0.0	1.1	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.6	gi|257052674|ref|YP_003130507.1|	-	4.8e-12	46.0	0.0	7.5e-12	45.4	0.0	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
NRDD	PF13597.6	gi|257052675|ref|YP_003130508.1|	-	1.6e-190	634.6	0.0	1.8e-190	634.4	0.0	1.0	1	0	0	1	1	1	1	Anaerobic	ribonucleoside-triphosphate	reductase
ATP-cone	PF03477.16	gi|257052675|ref|YP_003130508.1|	-	2.4e-22	79.3	0.1	6.1e-22	78.0	0.1	1.7	1	0	0	1	1	1	1	ATP	cone	domain
DUF3029	PF11230.8	gi|257052675|ref|YP_003130508.1|	-	0.016	13.6	0.1	0.68	8.2	0.0	2.8	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3029)
Ribosomal_L32p	PF01783.23	gi|257052675|ref|YP_003130508.1|	-	0.36	11.1	2.1	0.71	10.2	2.1	1.4	1	0	0	1	1	1	0	Ribosomal	L32p	protein	family
Gram_pos_anchor	PF00746.21	gi|257052677|ref|YP_003130510.1|	-	0.21	11.5	1.3	8.8	6.4	0.0	2.3	2	0	0	2	2	2	0	LPXTG	cell	wall	anchor	motif
VWA	PF00092.28	gi|257052678|ref|YP_003130511.1|	-	3.1e-27	96.0	0.0	6.2e-27	95.0	0.0	1.6	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA_2	PF13519.6	gi|257052678|ref|YP_003130511.1|	-	1.2e-19	70.9	0.0	5.7e-19	68.7	0.0	2.2	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA_3	PF13768.6	gi|257052678|ref|YP_003130511.1|	-	4.7e-06	26.6	0.1	1.7e-05	24.8	0.0	2.0	2	0	0	2	2	2	1	von	Willebrand	factor	type	A	domain
SMBP	PF16785.5	gi|257052678|ref|YP_003130511.1|	-	0.025	14.8	2.6	0.075	13.3	2.6	1.8	1	0	0	1	1	1	0	Small	metal-binding	protein
CobT_C	PF11775.8	gi|257052678|ref|YP_003130511.1|	-	0.16	11.6	0.1	0.39	10.3	0.0	1.6	2	0	0	2	2	2	0	Cobalamin	biosynthesis	protein	CobT	VWA	domain
Big_7	PF17957.1	gi|257052678|ref|YP_003130511.1|	-	0.84	10.5	6.1	0.55	11.0	0.5	3.5	3	0	0	3	3	3	0	Bacterial	Ig	domain
DUF4398	PF14346.6	gi|257052678|ref|YP_003130511.1|	-	2.2	8.9	5.3	5.3	7.7	5.3	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4398)
RIO1	PF01163.22	gi|257052679|ref|YP_003130512.1|	-	4.9e-58	195.8	0.0	2.1e-57	193.8	0.0	1.8	2	0	0	2	2	2	1	RIO1	family
APH	PF01636.23	gi|257052679|ref|YP_003130512.1|	-	1.1e-07	32.1	0.3	7.7e-06	26.0	0.0	2.6	1	1	1	2	2	2	1	Phosphotransferase	enzyme	family
Kdo	PF06293.14	gi|257052679|ref|YP_003130512.1|	-	1.4e-06	27.8	0.2	7e-06	25.5	0.2	1.9	1	1	0	1	1	1	1	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
Pkinase	PF00069.25	gi|257052679|ref|YP_003130512.1|	-	0.00032	20.2	0.0	0.00045	19.7	0.0	1.2	1	0	0	1	1	1	1	Protein	kinase	domain
Pkinase_fungal	PF17667.1	gi|257052679|ref|YP_003130512.1|	-	0.0023	16.8	0.0	0.0027	16.6	0.0	1.2	1	0	0	1	1	1	1	Fungal	protein	kinase
WaaY	PF06176.11	gi|257052679|ref|YP_003130512.1|	-	0.045	13.4	0.0	0.076	12.6	0.0	1.4	1	0	0	1	1	1	0	Lipopolysaccharide	core	biosynthesis	protein	(WaaY)
eIF-1a	PF01176.19	gi|257052680|ref|YP_003130513.1|	-	1.9e-24	85.2	0.7	2.4e-24	84.9	0.7	1.1	1	0	0	1	1	1	1	Translation	initiation	factor	1A	/	IF-1
Glyco_hydro_3	PF00933.21	gi|257052681|ref|YP_003130514.1|	-	1.3e-82	277.7	0.0	2e-82	277.1	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	N	terminal	domain
Glyco_hydro_3_C	PF01915.22	gi|257052681|ref|YP_003130514.1|	-	1.9e-58	197.8	0.1	4.2e-58	196.7	0.1	1.6	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	C-terminal	domain
Fn3-like	PF14310.6	gi|257052681|ref|YP_003130514.1|	-	2.2e-22	79.0	0.3	1.2e-21	76.6	0.2	2.3	2	0	0	2	2	2	1	Fibronectin	type	III-like	domain
DUF4232	PF14016.6	gi|257052681|ref|YP_003130514.1|	-	0.0024	18.0	0.3	0.0075	16.4	0.3	1.9	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF4232)
Cys_Met_Meta_PP	PF01053.20	gi|257052682|ref|YP_003130515.1|	-	6.2e-136	452.9	0.0	7e-136	452.7	0.0	1.0	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_1_2	PF00155.21	gi|257052682|ref|YP_003130515.1|	-	9.4e-09	34.9	0.0	1.3e-08	34.5	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
DegT_DnrJ_EryC1	PF01041.17	gi|257052682|ref|YP_003130515.1|	-	1.9e-08	34.0	0.3	5.6e-08	32.5	0.1	1.7	2	0	0	2	2	2	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Aminotran_5	PF00266.19	gi|257052682|ref|YP_003130515.1|	-	3.5e-06	26.2	0.0	6.2e-06	25.4	0.0	1.3	1	0	0	1	1	1	1	Aminotransferase	class-V
SepSecS	PF05889.13	gi|257052682|ref|YP_003130515.1|	-	0.0055	15.5	0.0	0.0081	14.9	0.0	1.2	1	0	0	1	1	1	1	O-phosphoseryl-tRNA(Sec)	selenium	transferase,	SepSecS
Beta_elim_lyase	PF01212.21	gi|257052682|ref|YP_003130515.1|	-	0.027	13.7	0.1	0.05	12.9	0.1	1.6	1	1	0	1	1	1	0	Beta-eliminating	lyase
TPP_enzyme_N	PF02776.18	gi|257052682|ref|YP_003130515.1|	-	0.029	14.0	0.4	3	7.4	0.1	2.5	2	0	0	2	2	2	0	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
IstB_IS21_ATP	PF08483.11	gi|257052682|ref|YP_003130515.1|	-	0.034	14.0	0.0	0.088	12.7	0.0	1.8	1	0	0	1	1	1	0	IstB-like	ATP	binding	N-terminal
DNA_pol_E_B	PF04042.16	gi|257052684|ref|YP_003130517.1|	-	2.2e-13	50.1	0.0	3.3e-13	49.5	0.0	1.2	1	0	0	1	1	1	1	DNA	polymerase	alpha/epsilon	subunit	B
Metallophos	PF00149.28	gi|257052684|ref|YP_003130517.1|	-	4.7e-09	37.0	1.6	1.4e-08	35.5	1.6	1.8	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|257052684|ref|YP_003130517.1|	-	7.6e-09	36.0	6.6	2.2e-08	34.5	6.6	1.7	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Peptidase_S24	PF00717.23	gi|257052685|ref|YP_003130518.1|	-	0.0048	16.8	0.8	0.025	14.6	0.8	2.0	1	1	0	1	1	1	1	Peptidase	S24-like
Peptidase_S24	PF00717.23	gi|257052686|ref|YP_003130519.1|	-	0.0027	17.6	0.1	0.0062	16.5	0.1	1.6	1	1	0	1	1	1	1	Peptidase	S24-like
Cdc6_C	PF09079.11	gi|257052687|ref|YP_003130520.1|	-	5.6e-25	87.1	0.1	1.3e-24	86.0	0.1	1.6	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_16	PF13191.6	gi|257052687|ref|YP_003130520.1|	-	3.4e-12	47.1	2.4	2.5e-11	44.3	0.0	2.9	3	0	0	3	3	3	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|257052687|ref|YP_003130520.1|	-	1.5e-08	35.0	0.2	2.8e-07	30.9	0.2	2.5	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|257052687|ref|YP_003130520.1|	-	2.5e-08	34.4	0.0	0.0028	18.1	0.0	2.5	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.26	gi|257052687|ref|YP_003130520.1|	-	0.0017	18.1	0.0	0.0041	16.8	0.0	1.6	1	0	0	1	1	1	1	Sigma-54	interaction	domain
TniB	PF05621.11	gi|257052687|ref|YP_003130520.1|	-	0.0021	17.5	0.1	0.017	14.6	0.0	2.2	2	0	0	2	2	2	1	Bacterial	TniB	protein
ATPase_2	PF01637.18	gi|257052687|ref|YP_003130520.1|	-	0.0024	17.8	0.4	0.0083	16.1	0.4	1.9	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
DUF815	PF05673.13	gi|257052687|ref|YP_003130520.1|	-	0.0036	16.5	0.0	0.0071	15.5	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
AAA_2	PF07724.14	gi|257052687|ref|YP_003130520.1|	-	0.0078	16.3	0.0	0.039	14.1	0.0	2.0	1	1	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
RuvB_N	PF05496.12	gi|257052687|ref|YP_003130520.1|	-	0.0095	15.7	0.0	0.03	14.1	0.0	1.9	2	0	0	2	2	2	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
T2SSE	PF00437.20	gi|257052687|ref|YP_003130520.1|	-	0.02	14.0	0.0	0.036	13.1	0.0	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
AAA_18	PF13238.6	gi|257052687|ref|YP_003130520.1|	-	0.046	14.3	0.0	0.12	12.9	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
AAA_lid_10	PF17872.1	gi|257052687|ref|YP_003130520.1|	-	0.068	13.3	0.0	0.33	11.1	0.0	2.0	2	0	0	2	2	2	0	AAA	lid	domain
ABC_tran	PF00005.27	gi|257052687|ref|YP_003130520.1|	-	0.068	13.7	0.0	0.18	12.3	0.0	1.9	1	1	0	1	1	1	0	ABC	transporter
AAA_assoc_2	PF16193.5	gi|257052687|ref|YP_003130520.1|	-	0.078	13.3	0.2	0.28	11.6	0.2	1.9	1	0	0	1	1	1	0	AAA	C-terminal	domain
AAA_7	PF12775.7	gi|257052687|ref|YP_003130520.1|	-	0.13	11.8	0.0	0.22	11.0	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
MutS_III	PF05192.18	gi|257052687|ref|YP_003130520.1|	-	0.15	12.3	3.4	0.31	11.2	3.1	1.8	1	1	0	1	1	1	0	MutS	domain	III
AAA_24	PF13479.6	gi|257052687|ref|YP_003130520.1|	-	0.16	11.7	0.1	0.44	10.2	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
TsaE	PF02367.17	gi|257052687|ref|YP_003130520.1|	-	0.17	11.9	0.0	0.32	11.0	0.0	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_32	PF13654.6	gi|257052687|ref|YP_003130520.1|	-	0.18	10.6	2.6	1.5	7.5	0.2	2.6	2	1	1	3	3	3	0	AAA	domain
DEAD	PF00270.29	gi|257052687|ref|YP_003130520.1|	-	0.56	9.9	3.9	7.5	6.3	2.2	2.6	2	1	0	2	2	2	0	DEAD/DEAH	box	helicase
Nnf1	PF03980.14	gi|257052687|ref|YP_003130520.1|	-	0.77	10.2	4.3	41	4.6	0.0	3.2	3	0	0	3	3	3	0	Nnf1
ABC_tran_CTD	PF16326.5	gi|257052687|ref|YP_003130520.1|	-	1.1	9.5	4.2	4	7.8	4.2	1.9	1	0	0	1	1	1	0	ABC	transporter	C-terminal	domain
MMR_HSR1	PF01926.23	gi|257052689|ref|YP_003130522.1|	-	1.2e-14	54.4	0.0	1.5e-14	54.0	0.0	1.2	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
GTP_EFTU	PF00009.27	gi|257052689|ref|YP_003130522.1|	-	3.3e-11	43.1	0.1	0.00016	21.3	0.0	3.4	1	1	1	2	2	2	2	Elongation	factor	Tu	GTP	binding	domain
Arf	PF00025.21	gi|257052689|ref|YP_003130522.1|	-	7e-08	32.1	0.0	7.4e-05	22.3	0.0	2.7	2	1	1	3	3	3	2	ADP-ribosylation	factor	family
FeoB_N	PF02421.18	gi|257052689|ref|YP_003130522.1|	-	4e-05	23.2	0.1	0.00034	20.2	0.1	2.3	1	1	0	1	1	1	1	Ferrous	iron	transport	protein	B
RsgA_GTPase	PF03193.16	gi|257052689|ref|YP_003130522.1|	-	0.0001	22.2	0.0	0.49	10.3	0.0	2.2	2	0	0	2	2	2	2	RsgA	GTPase
Roc	PF08477.13	gi|257052689|ref|YP_003130522.1|	-	0.00043	20.5	0.0	0.0064	16.7	0.0	2.1	2	0	0	2	2	2	1	Ras	of	Complex,	Roc,	domain	of	DAPkinase
Septin	PF00735.18	gi|257052689|ref|YP_003130522.1|	-	0.0005	19.4	0.0	0.00091	18.6	0.0	1.4	2	0	0	2	2	2	1	Septin
MMR_HSR1_Xtn	PF16897.5	gi|257052689|ref|YP_003130522.1|	-	0.00057	19.9	0.0	0.001	19.0	0.0	1.4	1	0	0	1	1	1	1	C-terminal	region	of	MMR_HSR1	domain
SRPRB	PF09439.10	gi|257052689|ref|YP_003130522.1|	-	0.00088	18.8	0.0	0.2	11.0	0.0	2.2	2	0	0	2	2	2	1	Signal	recognition	particle	receptor	beta	subunit
AAA_28	PF13521.6	gi|257052689|ref|YP_003130522.1|	-	0.00093	19.5	0.1	0.017	15.4	0.1	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_24	PF13479.6	gi|257052689|ref|YP_003130522.1|	-	0.0023	17.7	0.2	0.006	16.3	0.0	1.8	1	1	1	2	2	2	1	AAA	domain
AAA_18	PF13238.6	gi|257052689|ref|YP_003130522.1|	-	0.0031	18.1	0.0	0.01	16.4	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
NB-ARC	PF00931.22	gi|257052689|ref|YP_003130522.1|	-	0.0045	16.2	0.0	0.007	15.6	0.0	1.3	1	0	0	1	1	1	1	NB-ARC	domain
AAA	PF00004.29	gi|257052689|ref|YP_003130522.1|	-	0.0047	17.4	0.0	0.026	15.0	0.0	2.0	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Dynamin_N	PF00350.23	gi|257052689|ref|YP_003130522.1|	-	0.009	16.1	0.0	2	8.5	0.0	2.3	1	1	1	2	2	2	1	Dynamin	family
AAA_16	PF13191.6	gi|257052689|ref|YP_003130522.1|	-	0.014	15.8	0.0	0.028	14.8	0.0	1.7	1	1	0	1	1	1	0	AAA	ATPase	domain
RNA_helicase	PF00910.22	gi|257052689|ref|YP_003130522.1|	-	0.015	15.7	0.0	0.029	14.7	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
cobW	PF02492.19	gi|257052689|ref|YP_003130522.1|	-	0.019	14.5	0.0	6.1	6.4	0.0	2.3	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
ATPase_2	PF01637.18	gi|257052689|ref|YP_003130522.1|	-	0.024	14.6	0.0	0.039	13.9	0.0	1.6	1	1	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
RuvB_N	PF05496.12	gi|257052689|ref|YP_003130522.1|	-	0.045	13.5	0.0	0.091	12.5	0.0	1.5	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
ABC_tran	PF00005.27	gi|257052689|ref|YP_003130522.1|	-	0.056	14.0	0.0	0.092	13.3	0.0	1.5	1	1	0	1	1	1	0	ABC	transporter
AAA_25	PF13481.6	gi|257052689|ref|YP_003130522.1|	-	0.068	12.7	0.1	0.15	11.6	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|257052689|ref|YP_003130522.1|	-	0.08	12.9	0.0	0.14	12.1	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
Parvo_NS1	PF01057.17	gi|257052689|ref|YP_003130522.1|	-	0.17	11.0	0.0	0.28	10.3	0.0	1.2	1	0	0	1	1	1	0	Parvovirus	non-structural	protein	NS1
DUF2073	PF09846.9	gi|257052690|ref|YP_003130523.1|	-	8.1e-47	157.4	0.9	1e-46	157.1	0.9	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2073)
DUF2072	PF09845.9	gi|257052691|ref|YP_003130524.1|	-	9.8e-32	110.0	3.7	5.9e-17	62.2	0.2	2.3	1	1	1	2	2	2	2	Zn-ribbon	containing	protein
Zn-ribbon_8	PF09723.10	gi|257052691|ref|YP_003130524.1|	-	0.046	13.8	2.5	0.096	12.8	2.5	1.5	1	0	0	1	1	1	0	Zinc	ribbon	domain
DUF1451	PF07295.11	gi|257052691|ref|YP_003130524.1|	-	0.11	12.5	1.8	0.29	11.2	1.2	1.8	2	0	0	2	2	2	0	Zinc-ribbon	containing	domain
TF_Zn_Ribbon	PF08271.12	gi|257052691|ref|YP_003130524.1|	-	1.1	8.9	5.4	1.8	8.2	0.1	2.8	2	1	1	3	3	3	0	TFIIB	zinc-binding
DUF296	PF03479.15	gi|257052692|ref|YP_003130525.1|	-	8.9e-20	71.1	0.0	1.1e-19	70.8	0.0	1.1	1	0	0	1	1	1	1	Plants	and	Prokaryotes	Conserved	(PCC)	domain
DUF3961	PF13106.6	gi|257052692|ref|YP_003130525.1|	-	0.12	12.0	0.1	0.19	11.4	0.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3961)
PolC_DP2	PF03833.13	gi|257052693|ref|YP_003130526.1|	-	0	1312.3	0.0	0	1311.5	0.0	1.3	2	0	0	2	2	2	1	DNA	polymerase	II	large	subunit	DP2
zinc-ribbons_6	PF07191.12	gi|257052693|ref|YP_003130526.1|	-	0.12	12.4	11.8	4.4	7.4	8.8	2.7	2	1	0	2	2	2	0	zinc-ribbons
HypA	PF01155.19	gi|257052693|ref|YP_003130526.1|	-	0.29	11.2	17.2	3.8	7.6	1.6	3.5	2	1	1	3	3	3	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DZR	PF12773.7	gi|257052693|ref|YP_003130526.1|	-	0.96	9.5	18.0	6.8	6.8	0.3	3.2	2	1	0	2	2	2	0	Double	zinc	ribbon
Zn-ribbon_8	PF09723.10	gi|257052693|ref|YP_003130526.1|	-	5.9	7.1	19.4	1.6	9.0	1.8	3.7	3	0	0	3	3	3	0	Zinc	ribbon	domain
zf-CHY	PF05495.12	gi|257052693|ref|YP_003130526.1|	-	8.3	7.0	7.6	12	6.5	3.9	2.4	2	0	0	2	2	2	0	CHY	zinc	finger
DUF4265	PF14085.6	gi|257052695|ref|YP_003130528.1|	-	0.016	15.2	0.0	0.019	14.9	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4265)
CspB_prodomain	PF18425.1	gi|257052695|ref|YP_003130528.1|	-	0.12	12.4	0.0	0.15	12.0	0.0	1.1	1	0	0	1	1	1	0	Csp	protease	B	prodomain
TRAM	PF01938.20	gi|257052696|ref|YP_003130529.1|	-	1.5e-10	40.9	0.6	2.2e-10	40.4	0.6	1.3	1	0	0	1	1	1	1	TRAM	domain
LKAAEAR	PF15478.6	gi|257052696|ref|YP_003130529.1|	-	0.21	11.9	0.0	0.29	11.4	0.0	1.2	1	0	0	1	1	1	0	Family	of	unknown	function	with	LKAAEAR	motif
DNA_pol_phi	PF04931.13	gi|257052696|ref|YP_003130529.1|	-	9.5	4.2	6.6	10	4.1	6.6	1.0	1	0	0	1	1	1	0	DNA	polymerase	phi
adh_short_C2	PF13561.6	gi|257052697|ref|YP_003130530.1|	-	8.6e-53	179.3	0.2	1.3e-52	178.7	0.2	1.2	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|257052697|ref|YP_003130530.1|	-	5.9e-40	136.8	0.0	7.4e-40	136.5	0.0	1.0	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|257052697|ref|YP_003130530.1|	-	4.4e-09	36.5	0.1	6.9e-09	35.9	0.1	1.2	1	0	0	1	1	1	1	KR	domain
ADH_zinc_N	PF00107.26	gi|257052697|ref|YP_003130530.1|	-	0.047	13.7	0.5	0.094	12.7	0.5	1.6	1	1	0	1	1	1	0	Zinc-binding	dehydrogenase
ATP-synt_8	PF00895.20	gi|257052698|ref|YP_003130531.1|	-	0.15	12.5	1.7	1.3	9.6	0.9	2.0	2	0	0	2	2	2	0	ATP	synthase	protein	8
DUF4131	PF13567.6	gi|257052698|ref|YP_003130531.1|	-	0.43	10.2	3.9	0.51	10.0	3.9	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
PIG-P	PF08510.12	gi|257052698|ref|YP_003130531.1|	-	3	7.8	7.6	18	5.2	7.6	1.8	1	1	0	1	1	1	0	PIG-P
TPPK_C	PF12555.8	gi|257052698|ref|YP_003130531.1|	-	4.9	7.3	10.4	4.4	7.4	1.1	2.2	2	0	0	2	2	2	0	Thiamine	pyrophosphokinase	C	terminal
DUF2556	PF10831.8	gi|257052698|ref|YP_003130531.1|	-	9.9	6.2	8.5	0.69	9.9	2.9	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2556)
Laminin_G_3	PF13385.6	gi|257052699|ref|YP_003130532.1|	-	2.6e-15	56.9	5.0	5.3e-15	55.9	5.0	1.5	1	0	0	1	1	1	1	Concanavalin	A-like	lectin/glucanases	superfamily
Laminin_G_2	PF02210.24	gi|257052699|ref|YP_003130532.1|	-	0.0043	17.6	0.6	0.026	15.1	0.1	2.1	2	0	0	2	2	2	1	Laminin	G	domain
Pilin_N	PF07790.11	gi|257052699|ref|YP_003130532.1|	-	0.012	16.5	5.4	0.014	16.3	3.6	2.1	2	0	0	2	2	2	0	Archaeal	Type	IV	pilin,	N-terminal
ABC_tran	PF00005.27	gi|257052701|ref|YP_003130534.1|	-	1.6e-23	83.8	0.0	2e-23	83.4	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|257052701|ref|YP_003130534.1|	-	7.2e-17	62.2	0.3	2.6e-11	43.9	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_15	PF13175.6	gi|257052701|ref|YP_003130534.1|	-	0.0033	17.2	0.0	1.3	8.7	0.0	2.1	1	1	0	2	2	2	2	AAA	ATPase	domain
AAA_13	PF13166.6	gi|257052701|ref|YP_003130534.1|	-	0.02	13.5	0.1	1.6	7.3	0.1	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_23	PF13476.6	gi|257052701|ref|YP_003130534.1|	-	0.023	15.2	0.1	0.052	14.1	0.1	1.6	2	0	0	2	2	2	0	AAA	domain
SbcCD_C	PF13558.6	gi|257052701|ref|YP_003130534.1|	-	0.045	14.0	0.0	0.1	12.9	0.0	1.7	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA	PF00004.29	gi|257052701|ref|YP_003130534.1|	-	0.051	14.0	0.2	4	7.9	0.1	2.2	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_30	PF13604.6	gi|257052701|ref|YP_003130534.1|	-	0.14	11.9	0.1	0.27	10.9	0.1	1.4	1	0	0	1	1	1	0	AAA	domain
tRNA_anti-codon	PF01336.25	gi|257052703|ref|YP_003130536.1|	-	0.014	15.4	0.1	0.16	12.0	0.0	2.5	2	0	0	2	2	2	0	OB-fold	nucleic	acid	binding	domain
TMEM171	PF15471.6	gi|257052704|ref|YP_003130537.1|	-	0.042	12.8	0.1	0.054	12.5	0.1	1.1	1	0	0	1	1	1	0	Transmembrane	protein	family	171
Arch_flagellin	PF01917.16	gi|257052705|ref|YP_003130538.1|	-	1.8e-10	41.2	1.2	1.8e-10	41.2	1.2	2.2	2	0	0	2	2	2	1	Archaebacterial	flagellin
DUF4878	PF12870.7	gi|257052705|ref|YP_003130538.1|	-	3e-05	24.3	0.9	0.00041	20.6	0.1	2.8	2	2	0	2	2	2	1	Domain	of	unknown	function	(DUF4878)
DUF3416	PF11896.8	gi|257052705|ref|YP_003130538.1|	-	0.04	14.2	0.0	0.062	13.6	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3416)
RHH_1	PF01402.21	gi|257052706|ref|YP_003130539.1|	-	0.00015	21.6	1.8	0.00028	20.7	0.3	2.1	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
CopG_antitoxin	PF12441.8	gi|257052706|ref|YP_003130539.1|	-	0.011	16.3	0.0	0.022	15.3	0.0	1.5	1	0	0	1	1	1	0	CopG	antitoxin	of	type	II	toxin-antitoxin	system
DUF3562	PF12085.8	gi|257052706|ref|YP_003130539.1|	-	0.028	14.0	0.0	0.054	13.1	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3562)
UPF0449	PF15136.6	gi|257052706|ref|YP_003130539.1|	-	0.031	14.7	0.7	0.063	13.8	0.6	1.6	1	1	0	1	1	1	0	Uncharacterised	protein	family	UPF0449
DUF5305	PF17231.2	gi|257052706|ref|YP_003130539.1|	-	0.041	13.3	0.9	0.31	10.4	0.2	2.0	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5305)
RasGAP_C	PF03836.15	gi|257052706|ref|YP_003130539.1|	-	0.045	13.9	0.1	0.074	13.2	0.1	1.4	1	0	0	1	1	1	0	RasGAP	C-terminus
RHH_7	PF16777.5	gi|257052706|ref|YP_003130539.1|	-	0.3	11.5	1.6	0.32	11.4	0.1	1.8	2	0	0	2	2	2	0	Transcriptional	regulator,	RHH-like,	CopG
Med8	PF10232.9	gi|257052706|ref|YP_003130539.1|	-	6.9	6.2	7.2	5.6	6.5	6.0	1.4	1	1	0	1	1	1	0	Mediator	of	RNA	polymerase	II	transcription	complex	subunit	8
Pilin_N	PF07790.11	gi|257052709|ref|YP_003130542.1|	-	1.8e-22	80.1	3.0	2.3e-22	79.7	2.3	1.5	1	1	0	1	1	1	1	Archaeal	Type	IV	pilin,	N-terminal
HNH	PF01844.23	gi|257052710|ref|YP_003130543.1|	-	5.9e-07	29.6	1.6	5.9e-07	29.6	1.6	5.3	5	1	0	5	5	5	1	HNH	endonuclease
Zn-ribbon_8	PF09723.10	gi|257052710|ref|YP_003130543.1|	-	3.7e-05	23.7	26.8	0.087	13.0	2.2	5.8	5	1	0	5	5	5	3	Zinc	ribbon	domain
zf-C2H2_4	PF13894.6	gi|257052710|ref|YP_003130543.1|	-	0.0016	19.1	1.0	0.0016	19.1	1.0	6.8	7	1	0	7	7	7	1	C2H2-type	zinc	finger
DUF2318	PF10080.9	gi|257052710|ref|YP_003130543.1|	-	0.0058	16.7	0.2	0.0058	16.7	0.2	4.3	3	1	2	5	5	5	1	Predicted	membrane	protein	(DUF2318)
zf-C2H2	PF00096.26	gi|257052710|ref|YP_003130543.1|	-	0.014	15.8	1.7	0.014	15.8	1.7	6.5	7	1	0	7	7	7	0	Zinc	finger,	C2H2	type
C1_1	PF00130.22	gi|257052710|ref|YP_003130543.1|	-	0.03	14.2	0.4	0.03	14.2	0.4	5.2	5	2	1	6	6	6	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
DZR	PF12773.7	gi|257052710|ref|YP_003130543.1|	-	0.069	13.2	31.4	0.13	12.3	0.6	5.3	3	2	0	3	3	3	0	Double	zinc	ribbon
HNH_2	PF13391.6	gi|257052710|ref|YP_003130543.1|	-	0.53	10.5	4.9	0.14	12.3	1.3	1.9	2	0	0	2	2	2	0	HNH	endonuclease
zf-MYND	PF01753.18	gi|257052710|ref|YP_003130543.1|	-	8.9	6.5	33.2	28	4.9	0.5	6.1	4	3	1	5	5	5	0	MYND	finger
Spore_YtfJ	PF09579.10	gi|257052711|ref|YP_003130544.1|	-	9.3e-13	48.1	0.9	1.3e-12	47.7	0.9	1.2	1	0	0	1	1	1	1	Sporulation	protein	YtfJ	(Spore_YtfJ)
tRNA-synt_1	PF00133.22	gi|257052712|ref|YP_003130545.1|	-	3.8e-69	233.5	5.0	1.9e-39	135.4	6.4	5.0	1	1	1	2	2	2	2	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1_2	PF13603.6	gi|257052712|ref|YP_003130545.1|	-	2.4e-60	203.2	0.0	3.8e-60	202.6	0.0	1.3	1	0	0	1	1	1	1	Leucyl-tRNA	synthetase,	Domain	2
tRNA-synt_1g	PF09334.11	gi|257052712|ref|YP_003130545.1|	-	9.4e-35	120.1	0.0	2.9e-24	85.5	0.0	4.1	3	1	1	4	4	4	4	tRNA	synthetases	class	I	(M)
Anticodon_1	PF08264.13	gi|257052712|ref|YP_003130545.1|	-	4.1e-14	52.8	0.0	8.1e-14	51.8	0.0	1.5	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1f	PF01921.18	gi|257052712|ref|YP_003130545.1|	-	0.0042	16.1	0.0	0.25	10.2	0.0	2.4	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(K)
tRNA-synt_1e	PF01406.19	gi|257052712|ref|YP_003130545.1|	-	0.019	14.3	0.0	4.4	6.6	0.0	2.3	2	0	0	2	2	2	0	tRNA	synthetases	class	I	(C)	catalytic	domain
DNA_ligase_ZBD	PF03119.16	gi|257052712|ref|YP_003130545.1|	-	0.022	14.8	6.2	1.3	9.1	0.0	2.7	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
IBR	PF01485.21	gi|257052712|ref|YP_003130545.1|	-	0.032	14.5	3.1	0.13	12.5	0.2	2.6	2	1	0	2	2	2	0	IBR	domain,	a	half	RING-finger	domain
DZR	PF12773.7	gi|257052712|ref|YP_003130545.1|	-	0.055	13.5	5.1	0.78	9.8	0.5	3.0	2	1	1	3	3	3	0	Double	zinc	ribbon
Auto_anti-p27	PF06677.12	gi|257052712|ref|YP_003130545.1|	-	1	9.6	6.5	1.3	9.2	0.3	2.9	3	0	0	3	3	3	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
Prok-RING_1	PF14446.6	gi|257052712|ref|YP_003130545.1|	-	4.5	7.3	8.9	0.87	9.6	0.1	2.7	3	0	0	3	3	3	0	Prokaryotic	RING	finger	family	1
OCD_Mu_crystall	PF02423.15	gi|257052713|ref|YP_003130546.1|	-	4.3e-84	282.2	3.3	5.6e-84	281.8	3.3	1.1	1	0	0	1	1	1	1	Ornithine	cyclodeaminase/mu-crystallin	family
DUF1508	PF07411.12	gi|257052714|ref|YP_003130547.1|	-	4.1e-68	225.0	6.0	1.8e-13	50.1	0.0	12.2	12	0	0	12	12	12	10	Domain	of	unknown	function	(DUF1508)
DDE_Tnp_IS240	PF13610.6	gi|257052714|ref|YP_003130547.1|	-	0.0011	19.2	2.6	17	5.7	0.0	6.1	5	1	2	7	7	7	1	DDE	domain
sCache_like	PF16736.5	gi|257052714|ref|YP_003130547.1|	-	0.041	14.0	0.1	1.2	9.3	0.0	2.5	2	0	0	2	2	2	0	Single	Cache-like
MacB_PCD	PF12704.7	gi|257052714|ref|YP_003130547.1|	-	0.068	13.5	1.9	0.25	11.7	1.9	2.1	1	0	0	1	1	1	0	MacB-like	periplasmic	core	domain
Stimulus_sens_1	PF13756.6	gi|257052714|ref|YP_003130547.1|	-	0.094	13.3	0.6	14	6.3	0.0	4.0	4	1	1	5	5	5	0	Stimulus-sensing	domain
DUF2914	PF11141.8	gi|257052714|ref|YP_003130547.1|	-	1.1	9.0	8.9	1.9	8.3	0.0	5.4	6	0	0	6	6	6	0	Protein	of	unknown	function	(DUF2914)
ABC2_membrane_5	PF13346.6	gi|257052714|ref|YP_003130547.1|	-	3.3	7.2	13.4	4.6	6.8	13.4	1.1	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
Dodecin	PF07311.12	gi|257052714|ref|YP_003130547.1|	-	4.4	7.6	5.2	2.2	8.6	0.8	2.8	3	0	0	3	3	3	0	Dodecin
PQQ_2	PF13360.6	gi|257052717|ref|YP_003130550.1|	-	7.6e-47	159.9	15.6	4e-16	59.3	3.7	4.2	1	1	3	4	4	4	4	PQQ-like	domain
PQQ_3	PF13570.6	gi|257052717|ref|YP_003130550.1|	-	2e-44	149.0	37.1	7.1e-08	32.7	0.2	8.0	8	0	0	8	8	8	7	PQQ-like	domain
PQQ	PF01011.21	gi|257052717|ref|YP_003130550.1|	-	5.6e-38	127.1	20.8	2.2e-06	27.3	0.1	7.5	8	0	0	8	8	8	6	PQQ	enzyme	repeat
DUF11	PF01345.18	gi|257052717|ref|YP_003130550.1|	-	1.1e-05	25.6	1.1	2.6e-05	24.5	0.1	2.1	2	0	0	2	2	2	1	Domain	of	unknown	function	DUF11
WD40_like	PF17005.5	gi|257052717|ref|YP_003130550.1|	-	0.00092	18.6	0.0	0.3	10.3	0.0	2.6	2	1	1	3	3	3	2	WD40-like	domain
NPCBM_assoc	PF10633.9	gi|257052717|ref|YP_003130550.1|	-	0.002	18.3	0.0	0.028	14.7	0.0	2.7	1	1	0	1	1	1	1	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
bMG10	PF17973.1	gi|257052717|ref|YP_003130550.1|	-	0.019	15.2	0.0	0.043	14.0	0.0	1.6	1	0	0	1	1	1	0	Bacterial	Alpha-2-macroglobulin	MG10	domain
Mqo	PF06039.15	gi|257052717|ref|YP_003130550.1|	-	0.1	11.2	0.0	0.27	9.7	0.0	1.7	1	1	0	1	1	1	0	Malate:quinone	oxidoreductase	(Mqo)
SUKH-4	PF14435.6	gi|257052717|ref|YP_003130550.1|	-	0.84	9.7	4.9	3.8	7.5	0.2	3.4	2	2	2	4	4	4	0	SUKH-4	immunity	protein
PKD	PF00801.20	gi|257052718|ref|YP_003130551.1|	-	1.2e-16	60.3	20.1	6.8e-15	54.7	3.8	4.9	3	1	1	4	4	4	3	PKD	domain
SelB-wing_1	PF09105.10	gi|257052718|ref|YP_003130551.1|	-	0.00011	22.1	2.4	7.6	6.6	0.1	3.6	3	0	0	3	3	3	3	Elongation	factor	SelB,	winged	helix
FlgT_M	PF16539.5	gi|257052718|ref|YP_003130551.1|	-	0.00028	21.0	1.2	0.58	10.3	0.0	3.2	3	0	0	3	3	3	2	Flagellar	assembly	protein	T,	middle	domain
SNN_cytoplasm	PF09051.10	gi|257052718|ref|YP_003130551.1|	-	0.052	13.4	0.2	1.3e+02	2.6	0.0	4.1	4	0	0	4	4	4	0	Stannin	cytoplasmic
ChitinaseA_N	PF08329.10	gi|257052718|ref|YP_003130551.1|	-	0.081	12.6	1.3	0.2	11.3	0.1	2.3	3	0	0	3	3	3	0	Chitinase	A,	N-terminal	domain
FixH	PF05751.11	gi|257052718|ref|YP_003130551.1|	-	0.22	11.5	1.1	2.9	7.9	0.0	3.2	3	1	0	3	3	3	0	FixH
MG2	PF01835.19	gi|257052718|ref|YP_003130551.1|	-	0.44	11.0	6.4	29	5.2	0.1	5.6	5	1	0	5	5	5	0	MG2	domain
Abhydrolase_3	PF07859.13	gi|257052719|ref|YP_003130552.1|	-	2.9e-17	63.3	3.7	5.2e-11	42.8	1.2	2.4	2	1	0	2	2	2	2	alpha/beta	hydrolase	fold
Peptidase_S9	PF00326.21	gi|257052719|ref|YP_003130552.1|	-	1.6e-14	53.9	0.4	2.8e-09	36.8	0.0	2.2	2	0	0	2	2	2	2	Prolyl	oligopeptidase	family
COesterase	PF00135.28	gi|257052719|ref|YP_003130552.1|	-	3.3e-09	36.2	0.2	2e-08	33.6	0.1	1.9	1	1	0	1	1	1	1	Carboxylesterase	family
Peptidase_S15	PF02129.18	gi|257052719|ref|YP_003130552.1|	-	3.1e-06	27.0	0.1	0.059	13.0	0.0	2.3	2	0	0	2	2	2	2	X-Pro	dipeptidyl-peptidase	(S15	family)
Hydrolase_4	PF12146.8	gi|257052719|ref|YP_003130552.1|	-	4.8e-05	22.8	0.0	0.0049	16.2	0.0	2.3	2	0	0	2	2	2	1	Serine	aminopeptidase,	S33
Abhydrolase_6	PF12697.7	gi|257052719|ref|YP_003130552.1|	-	0.00043	20.9	9.5	0.00057	20.5	9.5	1.3	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
DLH	PF01738.18	gi|257052719|ref|YP_003130552.1|	-	0.021	14.4	0.0	0.34	10.4	0.0	2.6	2	1	0	2	2	2	0	Dienelactone	hydrolase	family
Abhydrolase_2	PF02230.16	gi|257052719|ref|YP_003130552.1|	-	0.05	13.4	0.0	0.69	9.7	0.0	2.3	2	1	0	2	2	2	0	Phospholipase/Carboxylesterase
FSH1	PF03959.13	gi|257052719|ref|YP_003130552.1|	-	0.11	12.2	0.0	0.17	11.6	0.0	1.3	1	0	0	1	1	1	0	Serine	hydrolase	(FSH1)
DUF2920	PF11144.8	gi|257052719|ref|YP_003130552.1|	-	0.25	10.4	0.0	15	4.6	0.0	2.5	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2920)
HATPase_c	PF02518.26	gi|257052720|ref|YP_003130553.1|	-	6e-16	58.9	0.0	1.2e-15	57.9	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|257052720|ref|YP_003130553.1|	-	1.8e-13	50.3	2.1	1.4e-12	47.4	0.5	2.5	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_4	PF08448.10	gi|257052720|ref|YP_003130553.1|	-	3.8e-05	23.9	0.2	0.0018	18.5	0.0	3.2	2	1	1	3	3	3	1	PAS	fold
HATPase_c_3	PF13589.6	gi|257052720|ref|YP_003130553.1|	-	0.01	15.6	0.0	0.021	14.7	0.0	1.5	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA_4TM	PF16926.5	gi|257052720|ref|YP_003130553.1|	-	2	7.9	11.8	23	4.5	9.5	2.9	2	1	0	2	2	2	0	Archaeal	4TM	region	of	histidine	kinase
Abhydrolase_6	PF12697.7	gi|257052721|ref|YP_003130554.1|	-	2.9e-19	70.6	4.4	3.5e-19	70.3	4.4	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.20	gi|257052721|ref|YP_003130554.1|	-	2.8e-18	66.5	0.0	1.6e-16	60.7	0.0	2.1	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.8	gi|257052721|ref|YP_003130554.1|	-	4.2e-14	52.4	0.0	1.3e-13	50.8	0.0	1.6	1	1	0	1	1	1	1	Serine	aminopeptidase,	S33
Ndr	PF03096.14	gi|257052721|ref|YP_003130554.1|	-	0.018	13.8	0.0	0.023	13.4	0.0	1.2	1	0	0	1	1	1	0	Ndr	family
PAF-AH_p_II	PF03403.13	gi|257052721|ref|YP_003130554.1|	-	0.084	11.4	0.0	0.15	10.6	0.0	1.3	1	0	0	1	1	1	0	Platelet-activating	factor	acetylhydrolase,	isoform	II
Abhydrolase_4	PF08386.10	gi|257052721|ref|YP_003130554.1|	-	0.089	12.9	0.0	0.62	10.2	0.0	2.1	2	0	0	2	2	2	0	TAP-like	protein
PCNA_N	PF00705.18	gi|257052722|ref|YP_003130555.1|	-	3.3e-10	39.7	0.1	6.7e-10	38.8	0.1	1.5	1	0	0	1	1	1	1	Proliferating	cell	nuclear	antigen,	N-terminal	domain
PCNA_C	PF02747.15	gi|257052722|ref|YP_003130555.1|	-	6.4e-07	29.6	0.0	9.5e-06	25.8	0.0	2.3	2	1	0	2	2	2	1	Proliferating	cell	nuclear	antigen,	C-terminal	domain
DNA_pol3_beta	PF00712.19	gi|257052722|ref|YP_003130555.1|	-	0.056	13.6	0.1	8.4	6.5	0.0	2.4	2	0	0	2	2	2	0	DNA	polymerase	III	beta	subunit,	N-terminal	domain
DUF3021	PF11457.8	gi|257052723|ref|YP_003130556.1|	-	0.072	13.4	3.0	0.094	13.1	3.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3021)
Sporozoite_P67	PF05642.11	gi|257052723|ref|YP_003130556.1|	-	0.21	9.6	0.2	0.19	9.7	0.2	1.0	1	0	0	1	1	1	0	Sporozoite	P67	surface	antigen
DNA_primase_lrg	PF04104.14	gi|257052724|ref|YP_003130557.1|	-	1.7e-31	109.6	0.0	3.3e-31	108.7	0.0	1.4	1	1	0	1	1	1	1	Eukaryotic	and	archaeal	DNA	primase,	large	subunit
Ploopntkinase1	PF18748.1	gi|257052724|ref|YP_003130557.1|	-	0.08	12.5	0.0	0.12	11.9	0.0	1.2	1	0	0	1	1	1	0	P-loop	Nucleotide	Kinase1
Hjc	PF01870.18	gi|257052726|ref|YP_003130559.1|	-	1.3e-29	102.0	0.0	1.8e-29	101.6	0.0	1.2	1	0	0	1	1	1	1	Archaeal	holliday	junction	resolvase	(hjc)
ABC_tran	PF00005.27	gi|257052727|ref|YP_003130560.1|	-	5.1e-24	85.3	0.0	7.6e-24	84.8	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|257052727|ref|YP_003130560.1|	-	7.6e-08	32.5	0.1	0.00025	21.0	0.0	2.1	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|257052727|ref|YP_003130560.1|	-	5.4e-05	22.7	0.0	0.012	15.1	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|257052727|ref|YP_003130560.1|	-	0.00017	22.2	0.0	0.00021	21.8	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_27	PF13514.6	gi|257052727|ref|YP_003130560.1|	-	0.0012	18.5	0.0	0.0018	17.9	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_13	PF13166.6	gi|257052727|ref|YP_003130560.1|	-	0.033	12.8	0.0	0.043	12.5	0.0	1.1	1	0	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|257052727|ref|YP_003130560.1|	-	0.037	14.4	0.0	0.067	13.6	0.0	1.4	1	1	0	1	1	1	0	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|257052727|ref|YP_003130560.1|	-	0.04	13.8	0.0	0.062	13.2	0.0	1.2	1	0	0	1	1	1	0	RsgA	GTPase
AAA_29	PF13555.6	gi|257052727|ref|YP_003130560.1|	-	0.078	12.7	0.0	0.14	11.9	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
SbcCD_C	PF13558.6	gi|257052727|ref|YP_003130560.1|	-	0.095	12.9	0.1	0.16	12.2	0.1	1.4	1	0	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_22	PF13401.6	gi|257052727|ref|YP_003130560.1|	-	0.18	12.1	0.0	0.23	11.7	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
ABC2_membrane_3	PF12698.7	gi|257052728|ref|YP_003130561.1|	-	5.4e-09	35.6	0.6	7.1e-09	35.2	0.6	1.1	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.24	gi|257052728|ref|YP_003130561.1|	-	5.4e-09	35.8	7.6	5.4e-09	35.8	7.6	1.7	2	0	0	2	2	2	1	ABC-2	type	transporter
TFIIA_gamma_N	PF02268.16	gi|257052728|ref|YP_003130561.1|	-	0.086	12.9	0.0	0.19	11.8	0.0	1.5	1	0	0	1	1	1	0	Transcription	initiation	factor	IIA,	gamma	subunit,	helical	domain
PepSY_TM	PF03929.16	gi|257052728|ref|YP_003130561.1|	-	5.5	6.6	8.0	0.88	9.2	1.8	2.7	1	1	1	2	2	2	0	PepSY-associated	TM	region
TAT_signal	PF10518.9	gi|257052730|ref|YP_003130563.1|	-	0.012	15.5	1.1	0.029	14.2	1.1	1.7	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Usp	PF00582.26	gi|257052731|ref|YP_003130564.1|	-	3.6e-62	209.0	9.7	7.5e-32	110.8	3.6	2.0	2	0	0	2	2	2	2	Universal	stress	protein	family
AP_endonuc_2	PF01261.24	gi|257052731|ref|YP_003130564.1|	-	0.01	15.3	0.3	0.066	12.6	0.1	2.0	2	0	0	2	2	2	0	Xylose	isomerase-like	TIM	barrel
FR47	PF08445.10	gi|257052731|ref|YP_003130564.1|	-	0.066	13.2	0.0	0.21	11.6	0.0	1.8	1	0	0	1	1	1	0	FR47-like	protein
DEAD	PF00270.29	gi|257052732|ref|YP_003130565.1|	-	4.1e-24	85.3	0.0	1.9e-23	83.1	0.0	2.1	3	0	0	3	3	3	1	DEAD/DEAH	box	helicase
Sec63	PF02889.16	gi|257052732|ref|YP_003130565.1|	-	1.6e-20	73.3	0.0	2.2e-20	72.9	0.0	1.1	1	0	0	1	1	1	1	Sec63	Brl	domain
ResIII	PF04851.15	gi|257052732|ref|YP_003130565.1|	-	2.6e-11	43.8	0.0	4.2e-11	43.1	0.0	1.3	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.31	gi|257052732|ref|YP_003130565.1|	-	6.2e-07	29.8	0.0	3.4e-06	27.4	0.0	2.2	1	1	0	1	1	1	1	Helicase	conserved	C-terminal	domain
HHH_5	PF14520.6	gi|257052732|ref|YP_003130565.1|	-	9.8e-05	22.9	1.6	0.00041	20.9	1.6	2.1	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
T2SSE	PF00437.20	gi|257052732|ref|YP_003130565.1|	-	0.018	14.1	0.0	0.072	12.1	0.0	1.9	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
DNA_pol_lambd_f	PF10391.9	gi|257052732|ref|YP_003130565.1|	-	0.14	12.0	0.3	0.49	10.3	0.0	2.0	2	0	0	2	2	2	0	Fingers	domain	of	DNA	polymerase	lambda
Cyclophil_like	PF04126.13	gi|257052734|ref|YP_003130567.1|	-	5e-27	94.1	0.0	5.9e-27	93.9	0.0	1.0	1	0	0	1	1	1	1	Cyclophilin-like
Cyclophil_like2	PF18050.1	gi|257052734|ref|YP_003130567.1|	-	2.3e-05	24.3	0.0	3.5e-05	23.7	0.0	1.4	1	1	0	1	1	1	1	Cyclophilin-like	family
GT87	PF09594.10	gi|257052735|ref|YP_003130568.1|	-	2.9e-22	79.5	32.2	2.9e-22	79.5	32.2	2.7	2	1	1	3	3	3	1	Glycosyltransferase	family	87
SecY	PF00344.20	gi|257052735|ref|YP_003130568.1|	-	3	7.0	9.0	0.18	11.0	0.9	2.6	3	0	0	3	3	3	0	SecY	translocase
HAD_2	PF13419.6	gi|257052736|ref|YP_003130569.1|	-	3.4e-23	82.6	0.0	4.6e-23	82.2	0.0	1.2	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|257052736|ref|YP_003130569.1|	-	5.6e-14	52.9	0.6	7.6e-13	49.2	0.6	2.0	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|257052736|ref|YP_003130569.1|	-	1.3e-08	35.5	0.1	1.7e-08	35.1	0.1	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|257052736|ref|YP_003130569.1|	-	1.9e-08	34.3	1.0	3.8e-08	33.3	0.5	1.8	3	0	0	3	3	3	1	HAD-hyrolase-like
Hydrolase_6	PF13344.6	gi|257052736|ref|YP_003130569.1|	-	0.048	13.8	0.0	0.23	11.6	0.0	2.2	1	1	0	1	1	1	0	Haloacid	dehalogenase-like	hydrolase
LOR	PF04525.12	gi|257052737|ref|YP_003130570.1|	-	1e-05	25.2	0.7	0.011	15.3	0.1	2.9	2	1	1	3	3	3	3	LURP-one-related
SNase	PF00565.17	gi|257052738|ref|YP_003130571.1|	-	1.3e-18	67.5	0.0	2e-18	66.8	0.0	1.2	1	0	0	1	1	1	1	Staphylococcal	nuclease	homologue
MttA_Hcf106	PF02416.16	gi|257052738|ref|YP_003130571.1|	-	0.53	9.7	1.9	1.2	8.6	1.9	1.5	1	0	0	1	1	1	0	mttA/Hcf106	family
TrmB	PF01978.19	gi|257052739|ref|YP_003130572.1|	-	1.1e-07	31.6	0.2	3.8e-07	29.9	0.2	1.8	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.7	gi|257052739|ref|YP_003130572.1|	-	5.8e-06	26.3	0.0	1.1e-05	25.4	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|257052739|ref|YP_003130572.1|	-	0.00023	20.9	0.2	0.0032	17.2	0.0	2.5	2	1	1	3	3	3	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.6	gi|257052739|ref|YP_003130572.1|	-	0.037	13.6	0.0	5.9	6.5	0.0	2.3	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.12	gi|257052739|ref|YP_003130572.1|	-	0.047	13.7	0.0	0.12	12.4	0.0	1.6	1	0	0	1	1	1	0	HTH	domain
DoxX_2	PF13564.6	gi|257052739|ref|YP_003130572.1|	-	0.059	13.5	0.6	0.1	12.7	0.6	1.4	1	0	0	1	1	1	0	DoxX-like	family
MarR_2	PF12802.7	gi|257052739|ref|YP_003130572.1|	-	0.081	12.8	0.1	0.54	10.2	0.0	2.2	2	0	0	2	2	2	0	MarR	family
PIN_12	PF16289.5	gi|257052740|ref|YP_003130573.1|	-	0.00049	20.6	0.0	0.12	12.8	0.0	2.3	2	0	0	2	2	2	2	PIN	domain
PIN_3	PF13470.6	gi|257052740|ref|YP_003130573.1|	-	0.0047	17.7	0.2	0.011	16.5	0.2	1.7	1	1	0	1	1	1	1	PIN	domain
AAA_33	PF13671.6	gi|257052740|ref|YP_003130573.1|	-	0.093	12.9	0.6	0.38	10.9	0.6	1.9	1	1	0	1	1	1	0	AAA	domain
RNA_pol_Rpb2_45	PF10385.9	gi|257052740|ref|YP_003130573.1|	-	0.36	11.1	2.0	0.75	10.1	0.1	2.2	2	0	0	2	2	2	0	RNA	polymerase	beta	subunit	external	1	domain
NucS	PF01939.16	gi|257052741|ref|YP_003130574.1|	-	3.6e-07	29.8	0.0	4.8e-07	29.4	0.0	1.1	1	0	0	1	1	1	1	Endonuclease	NucS
zf-C4_Topoisom	PF01396.19	gi|257052741|ref|YP_003130574.1|	-	7.2e-06	25.7	10.4	7e-05	22.5	0.5	3.0	3	0	0	3	3	3	2	Topoisomerase	DNA	binding	C4	zinc	finger
zinc-ribbons_6	PF07191.12	gi|257052741|ref|YP_003130574.1|	-	0.0024	17.8	3.9	0.4	10.7	0.8	2.5	1	1	1	2	2	2	2	zinc-ribbons
Auto_anti-p27	PF06677.12	gi|257052741|ref|YP_003130574.1|	-	0.0034	17.5	15.6	1.6	9.0	1.3	4.3	4	0	0	4	4	4	3	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zf-TFIIB	PF13453.6	gi|257052741|ref|YP_003130574.1|	-	0.12	11.8	5.7	0.32	10.4	0.2	2.9	2	1	1	3	3	3	0	Transcription	factor	zinc-finger
Rubredoxin_2	PF18073.1	gi|257052741|ref|YP_003130574.1|	-	0.13	12.0	2.9	7.5	6.4	0.2	3.3	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
zf_Rg	PF17915.1	gi|257052741|ref|YP_003130574.1|	-	0.15	11.5	0.1	0.15	11.5	0.1	2.8	2	1	1	3	3	3	0	Reverse	gyrase	zinc	finger
OrfB_Zn_ribbon	PF07282.11	gi|257052741|ref|YP_003130574.1|	-	0.38	10.7	3.7	8.1	6.5	0.6	2.5	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
Zn-ribbon_8	PF09723.10	gi|257052741|ref|YP_003130574.1|	-	0.96	9.6	10.3	1.5	9.0	0.1	3.6	3	0	0	3	3	3	0	Zinc	ribbon	domain
HypA	PF01155.19	gi|257052741|ref|YP_003130574.1|	-	1	9.4	7.7	2.8	8.0	1.7	3.2	1	1	1	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DUF1272	PF06906.11	gi|257052741|ref|YP_003130574.1|	-	6.4	6.9	10.5	1.5	9.0	1.6	2.9	3	0	0	3	3	2	0	Protein	of	unknown	function	(DUF1272)
DNA_ligase_ZBD	PF03119.16	gi|257052741|ref|YP_003130574.1|	-	6.6	6.9	13.8	0.19	11.8	2.4	3.8	3	0	0	3	3	3	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-ribbon_3	PF13248.6	gi|257052741|ref|YP_003130574.1|	-	9.2	5.8	10.6	2.5	7.6	1.5	3.2	3	0	0	3	3	3	0	zinc-ribbon	domain
tRNA_int_endo	PF01974.17	gi|257052742|ref|YP_003130575.1|	-	1.4e-33	114.8	0.5	4.9e-27	93.8	0.0	3.3	2	1	0	2	2	2	2	tRNA	intron	endonuclease,	catalytic	C-terminal	domain
tRNA_int_endo_N	PF02778.14	gi|257052742|ref|YP_003130575.1|	-	1.2e-26	92.1	0.2	1.4e-12	47.1	0.1	2.6	2	1	0	2	2	2	2	tRNA	intron	endonuclease,	N-terminal	domain
tRNA-synt_1b	PF00579.25	gi|257052743|ref|YP_003130576.1|	-	6.7e-40	137.2	0.0	8.7e-23	81.1	0.0	2.1	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(W	and	Y)
Rhomboid	PF01694.22	gi|257052744|ref|YP_003130577.1|	-	3e-12	46.8	10.6	1.5e-10	41.3	10.6	3.1	1	1	0	1	1	1	1	Rhomboid	family
Imm17	PF15562.6	gi|257052744|ref|YP_003130577.1|	-	0.054	13.4	0.3	0.054	13.4	0.3	3.3	3	0	0	3	3	3	0	Immunity	protein	17
COX4_pro_2	PF07835.12	gi|257052744|ref|YP_003130577.1|	-	0.85	9.8	4.9	0.73	10.0	0.2	3.0	2	0	0	2	2	2	0	Bacterial	aa3	type	cytochrome	c	oxidase	subunit	IV
MatE	PF01554.18	gi|257052745|ref|YP_003130578.1|	-	1.5e-47	161.2	26.5	1.7e-27	96.1	8.1	2.7	2	1	1	3	3	3	2	MatE
Polysacc_synt_C	PF14667.6	gi|257052745|ref|YP_003130578.1|	-	8.5e-11	42.1	9.4	8.5e-11	42.1	9.4	4.6	4	1	1	5	5	5	2	Polysaccharide	biosynthesis	C-terminal	domain
tRNA-synt_2d	PF01409.20	gi|257052748|ref|YP_003130581.1|	-	2.8e-74	249.7	0.0	3.6e-74	249.3	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	II	core	domain	(F)
tRNA-synt_2	PF00152.20	gi|257052748|ref|YP_003130581.1|	-	0.00018	20.7	1.8	0.16	11.0	0.1	2.6	3	0	0	3	3	3	2	tRNA	synthetases	class	II	(D,	K	and	N)
MarR_2	PF12802.7	gi|257052748|ref|YP_003130581.1|	-	0.00035	20.4	3.1	0.0013	18.5	0.3	3.1	3	1	1	4	4	4	1	MarR	family
HTH_24	PF13412.6	gi|257052748|ref|YP_003130581.1|	-	0.00045	19.7	0.0	0.00085	18.8	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|257052748|ref|YP_003130581.1|	-	0.00079	19.3	0.3	0.075	13.0	0.0	2.6	2	0	0	2	2	2	1	MarR	family
TrmB	PF01978.19	gi|257052748|ref|YP_003130581.1|	-	0.005	16.7	0.1	2.8	7.9	0.0	3.1	2	1	1	3	3	3	1	Sugar-specific	transcriptional	regulator	TrmB
DprA_WH	PF17782.1	gi|257052748|ref|YP_003130581.1|	-	0.016	15.3	2.5	0.016	15.3	2.5	2.3	2	0	0	2	2	2	0	DprA	winged	helix	domain
HTH_Crp_2	PF13545.6	gi|257052748|ref|YP_003130581.1|	-	0.018	15.0	1.2	1	9.4	0.1	2.5	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|257052748|ref|YP_003130581.1|	-	0.031	14.1	1.4	0.068	13.0	0.3	2.2	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
tRNA_synthFbeta	PF17759.1	gi|257052748|ref|YP_003130581.1|	-	0.033	13.6	0.0	1.6	8.1	0.0	2.3	2	0	0	2	2	2	0	Phenylalanyl	tRNA	synthetase	beta	chain	CLM	domain
HTH_27	PF13463.6	gi|257052748|ref|YP_003130581.1|	-	0.1	13.1	2.3	11	6.6	0.1	2.5	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
tRNA_synthFbeta	PF17759.1	gi|257052749|ref|YP_003130582.1|	-	5.5e-43	146.9	0.0	8.6e-43	146.3	0.0	1.3	1	0	0	1	1	1	1	Phenylalanyl	tRNA	synthetase	beta	chain	CLM	domain
B5	PF03484.15	gi|257052749|ref|YP_003130582.1|	-	6.3e-18	64.8	0.8	1.2e-16	60.8	0.1	2.7	2	0	0	2	2	2	1	tRNA	synthetase	B5	domain
B3_4	PF03483.17	gi|257052749|ref|YP_003130582.1|	-	7e-11	42.1	0.0	1.1e-10	41.4	0.0	1.3	1	0	0	1	1	1	1	B3/4	domain
PhetRS_B1	PF18262.1	gi|257052749|ref|YP_003130582.1|	-	3e-06	27.3	0.3	0.00024	21.3	0.2	3.0	2	1	0	2	2	2	1	Phe-tRNA	synthetase	beta	subunit	B1	domain
tRNA-synt_2d	PF01409.20	gi|257052749|ref|YP_003130582.1|	-	0.0041	16.6	0.0	0.007	15.9	0.0	1.3	1	0	0	1	1	1	1	tRNA	synthetases	class	II	core	domain	(F)
DHO_dh	PF01180.21	gi|257052751|ref|YP_003130584.1|	-	9.3e-84	281.1	0.0	1.1e-83	280.8	0.0	1.1	1	0	0	1	1	1	1	Dihydroorotate	dehydrogenase
NMO	PF03060.15	gi|257052751|ref|YP_003130584.1|	-	2.2e-06	27.3	0.3	2.7e-05	23.7	0.1	2.1	2	0	0	2	2	2	1	Nitronate	monooxygenase
MazE_antitoxin	PF04014.18	gi|257052752|ref|YP_003130585.1|	-	0.01	15.7	0.1	0.015	15.2	0.1	1.3	1	0	0	1	1	1	0	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
SymE_toxin	PF08845.10	gi|257052752|ref|YP_003130585.1|	-	0.016	15.2	0.0	0.017	15.1	0.0	1.2	1	0	0	1	1	1	0	Toxin	SymE,	type	I	toxin-antitoxin	system
MC1	PF05854.11	gi|257052753|ref|YP_003130586.1|	-	1.1e-47	160.3	0.2	1.3e-47	160.0	0.2	1.0	1	0	0	1	1	1	1	Non-histone	chromosomal	protein	MC1
DUF4776	PF16003.5	gi|257052753|ref|YP_003130586.1|	-	0.013	14.6	0.1	0.013	14.6	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4776)
UPF0175	PF03683.13	gi|257052755|ref|YP_003130588.1|	-	5.6e-14	51.6	0.2	7.9e-14	51.1	0.2	1.2	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0175)
RHH_1	PF01402.21	gi|257052755|ref|YP_003130588.1|	-	0.027	14.4	0.0	0.08	12.9	0.0	1.9	1	0	0	1	1	1	0	Ribbon-helix-helix	protein,	copG	family
PIN	PF01850.21	gi|257052756|ref|YP_003130589.1|	-	0.0024	18.4	0.5	0.0044	17.5	0.5	1.4	1	0	0	1	1	1	1	PIN	domain
Se-cys_synth_N	PF12390.8	gi|257052756|ref|YP_003130589.1|	-	0.058	13.6	0.8	0.16	12.2	0.8	1.7	1	0	0	1	1	1	0	Selenocysteine	synthase	N	terminal
TrbC	PF04956.13	gi|257052757|ref|YP_003130590.1|	-	7.1e-05	23.0	3.8	0.0001	22.5	3.6	1.5	1	1	0	1	1	1	1	TrbC/VIRB2	family
AAA_22	PF13401.6	gi|257052761|ref|YP_003130594.1|	-	1.5e-06	28.5	0.2	0.0023	18.2	0.1	2.5	2	0	0	2	2	2	2	AAA	domain
AAA_10	PF12846.7	gi|257052761|ref|YP_003130594.1|	-	4e-05	22.7	0.1	0.24	10.3	0.0	2.2	2	0	0	2	2	2	2	AAA-like	domain
DUF853	PF05872.12	gi|257052761|ref|YP_003130594.1|	-	0.013	14.1	0.0	0.026	13.1	0.0	1.4	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF853)
TrwB_AAD_bind	PF10412.9	gi|257052761|ref|YP_003130594.1|	-	0.042	12.8	0.4	0.82	8.5	0.1	2.2	2	0	0	2	2	2	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_16	PF13191.6	gi|257052761|ref|YP_003130594.1|	-	0.1	13.0	2.1	1.5	9.1	2.1	2.6	1	1	0	1	1	1	0	AAA	ATPase	domain
CENP-F_leu_zip	PF10473.9	gi|257052761|ref|YP_003130594.1|	-	0.14	12.2	0.1	0.27	11.2	0.1	1.4	1	0	0	1	1	1	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
ABC_tran	PF00005.27	gi|257052761|ref|YP_003130594.1|	-	0.17	12.4	0.0	5.6	7.5	0.0	2.5	2	0	0	2	2	2	0	ABC	transporter
DUF87	PF01935.17	gi|257052762|ref|YP_003130595.1|	-	0.0001	22.5	0.0	0.00029	21.0	0.0	1.8	1	1	0	1	1	1	1	Helicase	HerA,	central	domain
Pox_D5	PF03288.16	gi|257052762|ref|YP_003130595.1|	-	0.00031	21.2	0.0	0.0007	20.0	0.0	1.5	1	0	0	1	1	1	1	Poxvirus	D5	protein-like
TrwB_AAD_bind	PF10412.9	gi|257052762|ref|YP_003130595.1|	-	0.00084	18.4	0.0	0.12	11.2	0.0	2.1	2	0	0	2	2	2	2	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
TraG-D_C	PF12696.7	gi|257052762|ref|YP_003130595.1|	-	0.01	15.8	0.0	0.033	14.2	0.0	1.8	2	0	0	2	2	2	0	TraM	recognition	site	of	TraD	and	TraG
La_HTH_kDCL	PF18177.1	gi|257052762|ref|YP_003130595.1|	-	0.14	12.5	0.0	0.56	10.5	0.0	1.9	2	0	0	2	2	2	0	La	HTH	in	kinetoplastid	DICER	domain
Cortex-I_coil	PF09304.10	gi|257052763|ref|YP_003130596.1|	-	0.0076	16.5	0.7	0.016	15.4	0.7	1.5	1	0	0	1	1	1	1	Cortexillin	I,	coiled	coil
SlyX	PF04102.12	gi|257052763|ref|YP_003130596.1|	-	0.0083	16.7	2.2	0.66	10.6	0.7	3.3	3	0	0	3	3	3	1	SlyX
HAP1_N	PF04849.13	gi|257052763|ref|YP_003130596.1|	-	0.013	14.7	2.2	0.02	14.1	2.2	1.2	1	0	0	1	1	1	0	HAP1	N-terminal	conserved	region
PKcGMP_CC	PF16808.5	gi|257052763|ref|YP_003130596.1|	-	0.031	14.1	5.7	0.031	14.1	5.7	2.0	2	0	0	2	2	2	0	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
VirE_N	PF08800.10	gi|257052763|ref|YP_003130596.1|	-	0.093	12.9	0.0	0.2	11.7	0.0	1.6	1	0	0	1	1	1	0	VirE	N-terminal	domain
Pertussis_S1	PF02917.14	gi|257052766|ref|YP_003130599.1|	-	0.025	14.3	0.0	0.035	13.9	0.0	1.2	1	0	0	1	1	1	0	Pertussis	toxin,	subunit	1
tRNA_anti-codon	PF01336.25	gi|257052767|ref|YP_003130600.1|	-	0.073	13.1	0.0	0.15	12.0	0.0	1.6	1	0	0	1	1	1	0	OB-fold	nucleic	acid	binding	domain
PDDEXK_4	PF14281.6	gi|257052769|ref|YP_003130602.1|	-	2.6e-13	50.5	0.0	4.8e-13	49.7	0.0	1.4	1	0	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
HSDR_N	PF04313.14	gi|257052769|ref|YP_003130602.1|	-	0.0025	17.8	0.0	0.0064	16.5	0.0	1.7	1	0	0	1	1	1	1	Type	I	restriction	enzyme	R	protein	N	terminus	(HSDR_N)
YozE_SAM_like	PF06855.12	gi|257052769|ref|YP_003130602.1|	-	0.056	13.6	0.7	0.19	11.9	0.2	2.2	2	0	0	2	2	2	0	YozE	SAM-like	fold
TFIIB	PF00382.19	gi|257052770|ref|YP_003130603.1|	-	6.1e-29	99.9	0.1	1.8e-13	50.3	0.0	2.2	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|257052770|ref|YP_003130603.1|	-	1.9e-11	43.3	2.4	3.5e-11	42.4	2.4	1.5	1	0	0	1	1	1	1	TFIIB	zinc-binding
Sigma70_r4	PF04545.16	gi|257052770|ref|YP_003130603.1|	-	0.00042	19.8	0.0	0.0065	16.0	0.0	2.6	3	0	0	3	3	2	1	Sigma-70,	region	4
HTH_AsnC-type	PF13404.6	gi|257052770|ref|YP_003130603.1|	-	0.00043	20.0	0.2	0.0079	16.0	0.0	2.6	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HTH_23	PF13384.6	gi|257052770|ref|YP_003130603.1|	-	0.0023	17.7	0.1	0.021	14.6	0.1	2.6	3	0	0	3	3	3	1	Homeodomain-like	domain
HTH_3	PF01381.22	gi|257052770|ref|YP_003130603.1|	-	0.0044	17.0	0.0	0.024	14.7	0.0	2.1	2	0	0	2	2	2	1	Helix-turn-helix
HTH_24	PF13412.6	gi|257052770|ref|YP_003130603.1|	-	0.0065	16.0	0.0	0.02	14.4	0.0	1.9	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_Crp_2	PF13545.6	gi|257052770|ref|YP_003130603.1|	-	0.011	15.7	0.0	0.17	11.9	0.0	2.7	3	1	0	3	3	3	0	Crp-like	helix-turn-helix	domain
TetR_N	PF00440.23	gi|257052770|ref|YP_003130603.1|	-	0.021	14.6	0.1	0.89	9.4	0.0	3.2	3	0	0	3	3	3	0	Bacterial	regulatory	proteins,	tetR	family
MarR_2	PF12802.7	gi|257052770|ref|YP_003130603.1|	-	0.025	14.5	0.1	0.2	11.6	0.0	2.5	3	0	0	3	3	3	0	MarR	family
Cyclin_C	PF02984.19	gi|257052770|ref|YP_003130603.1|	-	0.033	14.3	0.0	1.2	9.3	0.0	2.2	2	0	0	2	2	2	0	Cyclin,	C-terminal	domain
OrfB_Zn_ribbon	PF07282.11	gi|257052770|ref|YP_003130603.1|	-	0.037	14.0	1.3	0.091	12.7	0.6	1.9	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
HTH_28	PF13518.6	gi|257052770|ref|YP_003130603.1|	-	0.038	14.1	0.2	1.1	9.4	0.1	2.7	2	0	0	2	2	2	0	Helix-turn-helix	domain
LacI	PF00356.21	gi|257052770|ref|YP_003130603.1|	-	0.049	13.4	0.6	1.2	9.0	0.0	2.6	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	lacI	family
Sigma70_r4_2	PF08281.12	gi|257052770|ref|YP_003130603.1|	-	0.077	12.7	0.0	0.25	11.0	0.0	1.8	2	0	0	2	2	2	0	Sigma-70,	region	4
HTH_31	PF13560.6	gi|257052770|ref|YP_003130603.1|	-	0.11	12.8	2.7	0.38	11.1	0.0	2.8	3	1	0	3	3	3	0	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|257052770|ref|YP_003130603.1|	-	0.14	12.2	0.0	1.4	8.9	0.0	2.2	2	0	0	2	2	2	0	HTH	domain
RB_B	PF01857.20	gi|257052770|ref|YP_003130603.1|	-	0.14	12.2	0.0	0.23	11.5	0.0	1.3	1	0	0	1	1	1	0	Retinoblastoma-associated	protein	B	domain
Zn-ribbon_8	PF09723.10	gi|257052770|ref|YP_003130603.1|	-	0.15	12.2	3.5	0.35	11.0	0.2	2.5	1	1	1	2	2	2	0	Zinc	ribbon	domain
H2O2_YaaD	PF03883.14	gi|257052772|ref|YP_003130605.1|	-	0.1	12.1	0.0	0.16	11.5	0.0	1.3	1	0	0	1	1	1	0	Peroxide	stress	protein	YaaA
TBPIP	PF07106.13	gi|257052774|ref|YP_003130607.1|	-	0.0002	21.2	0.0	0.00036	20.4	0.0	1.4	1	0	0	1	1	1	1	TBPIP/Hop2	winged	helix	domain
HTH_24	PF13412.6	gi|257052774|ref|YP_003130607.1|	-	0.004	16.7	0.0	0.0079	15.7	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.12	gi|257052774|ref|YP_003130607.1|	-	0.017	15.1	0.0	0.03	14.3	0.0	1.4	1	0	0	1	1	1	0	HTH	domain
HTH_IclR	PF09339.10	gi|257052774|ref|YP_003130607.1|	-	0.061	13.1	0.0	0.14	12.0	0.0	1.5	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
Phage_rep_O	PF04492.13	gi|257052774|ref|YP_003130607.1|	-	0.14	12.8	0.0	0.26	11.9	0.0	1.3	1	0	0	1	1	1	0	Bacteriophage	replication	protein	O
McrBC	PF10117.9	gi|257052776|ref|YP_003130609.1|	-	8.5e-58	196.0	0.0	1.1e-57	195.7	0.0	1.1	1	0	0	1	1	1	1	McrBC	5-methylcytosine	restriction	system	component
HSDR_N_2	PF13588.6	gi|257052776|ref|YP_003130609.1|	-	0.0095	15.9	0.0	0.021	14.8	0.0	1.5	1	0	0	1	1	1	1	Type	I	restriction	enzyme	R	protein	N	terminus	(HSDR_N)
AAA_5	PF07728.14	gi|257052777|ref|YP_003130610.1|	-	3.3e-15	56.3	0.0	8.6e-15	55.0	0.0	1.8	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA_22	PF13401.6	gi|257052777|ref|YP_003130610.1|	-	5.2e-07	30.0	0.0	1.4e-06	28.6	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|257052777|ref|YP_003130610.1|	-	9.2e-07	29.3	0.0	2.2e-06	28.1	0.0	1.6	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_19	PF13245.6	gi|257052777|ref|YP_003130610.1|	-	0.0027	18.1	0.0	0.0078	16.6	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|257052777|ref|YP_003130610.1|	-	0.0041	16.9	0.1	0.012	15.3	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|257052777|ref|YP_003130610.1|	-	0.01	16.3	0.0	0.031	14.7	0.0	1.9	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_24	PF13479.6	gi|257052777|ref|YP_003130610.1|	-	0.012	15.3	0.0	0.023	14.4	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Mg_chelatase	PF01078.21	gi|257052777|ref|YP_003130610.1|	-	0.054	12.9	0.0	0.1	11.9	0.0	1.4	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_7	PF12775.7	gi|257052777|ref|YP_003130610.1|	-	0.095	12.2	0.0	1.4	8.4	0.0	2.2	2	0	0	2	2	2	0	P-loop	containing	dynein	motor	region
RNA_helicase	PF00910.22	gi|257052777|ref|YP_003130610.1|	-	0.095	13.1	0.0	0.23	11.8	0.0	1.7	1	0	0	1	1	1	0	RNA	helicase
PhoH	PF02562.16	gi|257052777|ref|YP_003130610.1|	-	0.11	12.0	0.0	0.22	10.9	0.0	1.5	1	0	0	1	1	1	0	PhoH-like	protein
AAA_11	PF13086.6	gi|257052777|ref|YP_003130610.1|	-	0.13	12.1	0.0	0.25	11.1	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|257052777|ref|YP_003130610.1|	-	0.14	12.0	0.0	0.52	10.2	0.0	2.0	2	0	0	2	2	2	0	NACHT	domain
ASCH	PF04266.14	gi|257052777|ref|YP_003130610.1|	-	0.17	12.4	0.6	5.2	7.7	0.0	3.0	2	1	1	3	3	3	0	ASCH	domain
Helicase_C	PF00271.31	gi|257052779|ref|YP_003130612.1|	-	1.3e-21	77.0	0.0	4e-21	75.4	0.0	1.9	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
SNF2_N	PF00176.23	gi|257052779|ref|YP_003130612.1|	-	1.6e-14	53.4	0.0	3.5e-14	52.3	0.0	1.6	1	1	0	1	1	1	1	SNF2	family	N-terminal	domain
ResIII	PF04851.15	gi|257052779|ref|YP_003130612.1|	-	5.2e-11	42.8	0.0	2e-10	40.9	0.0	2.0	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
Helicase_RecD	PF05127.14	gi|257052779|ref|YP_003130612.1|	-	0.0014	18.5	0.0	0.0038	17.1	0.0	1.7	1	0	0	1	1	1	1	Helicase
RapA_C	PF12137.8	gi|257052779|ref|YP_003130612.1|	-	0.0054	15.8	0.0	0.0054	15.8	0.0	2.7	3	0	0	3	3	3	1	RNA	polymerase	recycling	family	C-terminal
DUF4404	PF14357.6	gi|257052779|ref|YP_003130612.1|	-	0.12	13.0	0.2	0.12	13.0	0.2	4.1	4	0	0	4	4	4	0	Domain	of	unknown	function	(DUF4404)
Phage_30_8	PF06019.11	gi|257052779|ref|YP_003130612.1|	-	0.16	11.9	0.1	5.2	7.0	0.0	2.9	3	0	0	3	3	3	0	Phage	GP30.8	protein
Flavi_DEAD	PF07652.14	gi|257052779|ref|YP_003130612.1|	-	0.16	11.9	0.1	0.37	10.7	0.1	1.5	1	0	0	1	1	1	0	Flavivirus	DEAD	domain
AAA_11	PF13086.6	gi|257052779|ref|YP_003130612.1|	-	0.84	9.4	7.1	1.2	8.8	0.0	3.3	4	0	0	4	4	4	0	AAA	domain
N6_Mtase	PF02384.16	gi|257052780|ref|YP_003130613.1|	-	7.5e-08	32.0	0.0	2.1e-05	24.0	0.0	2.7	2	0	0	2	2	2	2	N-6	DNA	Methylase
Eco57I	PF07669.11	gi|257052780|ref|YP_003130613.1|	-	5.3e-06	26.9	0.1	0.0011	19.4	0.1	2.9	1	1	0	1	1	1	1	Eco57I	restriction-modification	methylase
UPF0020	PF01170.18	gi|257052780|ref|YP_003130613.1|	-	0.0077	15.9	0.0	0.15	11.7	0.0	2.3	2	0	0	2	2	2	1	Putative	RNA	methylase	family	UPF0020
SRR	PF07709.11	gi|257052781|ref|YP_003130614.1|	-	0.038	14.3	1.3	8.5	7.3	0.1	3.1	2	0	0	2	2	2	0	Seven	Residue	Repeat
5_3_exonuc	PF01367.20	gi|257052781|ref|YP_003130614.1|	-	0.17	12.5	0.0	0.33	11.6	0.0	1.4	1	0	0	1	1	1	0	5'-3'	exonuclease,	C-terminal	SAM	fold
AAA_15	PF13175.6	gi|257052782|ref|YP_003130615.1|	-	4.1e-31	109.0	4.9	9e-30	104.6	4.9	2.3	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_21	PF13304.6	gi|257052782|ref|YP_003130615.1|	-	5.1e-25	88.9	4.0	6.3e-24	85.3	1.9	2.6	2	1	0	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|257052782|ref|YP_003130615.1|	-	3.2e-12	46.3	4.3	1.3e-05	24.7	0.9	2.3	2	1	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
DUF2813	PF11398.8	gi|257052782|ref|YP_003130615.1|	-	1.4e-07	31.1	0.0	0.00051	19.4	0.0	2.2	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF2813)
ABC_tran	PF00005.27	gi|257052782|ref|YP_003130615.1|	-	0.0015	19.1	0.6	0.0069	16.9	0.6	2.2	1	1	0	1	1	1	1	ABC	transporter
AAA_23	PF13476.6	gi|257052782|ref|YP_003130615.1|	-	0.0021	18.6	3.5	0.006	17.1	3.5	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_27	PF13514.6	gi|257052782|ref|YP_003130615.1|	-	0.012	15.2	0.0	0.021	14.4	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_29	PF13555.6	gi|257052782|ref|YP_003130615.1|	-	0.1	12.4	0.0	0.22	11.3	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
HATPase_c_3	PF13589.6	gi|257052783|ref|YP_003130616.1|	-	1.1e-05	25.3	0.0	0.00033	20.5	0.0	2.6	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
DEAD	PF00270.29	gi|257052784|ref|YP_003130617.1|	-	1.5e-22	80.2	0.0	5.5e-22	78.4	0.0	1.9	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|257052784|ref|YP_003130617.1|	-	6.7e-13	49.0	0.0	6.5e-12	45.8	0.0	2.5	3	0	0	3	3	3	1	Helicase	conserved	C-terminal	domain
DUF1998	PF09369.10	gi|257052784|ref|YP_003130617.1|	-	4.6e-09	36.9	1.3	7.6e-08	33.0	0.0	3.1	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1998)
ResIII	PF04851.15	gi|257052784|ref|YP_003130617.1|	-	0.00013	22.1	0.0	0.00025	21.1	0.0	1.5	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
DUF2072	PF09845.9	gi|257052784|ref|YP_003130617.1|	-	0.0086	16.3	0.6	0.79	10.0	0.1	3.1	2	0	0	2	2	2	1	Zn-ribbon	containing	protein
Auto_anti-p27	PF06677.12	gi|257052784|ref|YP_003130617.1|	-	0.19	11.9	10.5	0.095	12.9	0.8	2.8	2	0	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
OrfB_Zn_ribbon	PF07282.11	gi|257052784|ref|YP_003130617.1|	-	0.46	10.4	8.8	13	5.8	0.1	4.2	4	0	0	4	4	4	0	Putative	transposase	DNA-binding	domain
DUF3039	PF11238.8	gi|257052784|ref|YP_003130617.1|	-	2.7	7.8	4.1	3.8	7.3	0.2	3.1	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3039)
zf-ACC	PF17848.1	gi|257052784|ref|YP_003130617.1|	-	8.6	6.5	7.5	18	5.5	0.1	4.0	3	0	0	3	3	3	0	Acetyl-coA	carboxylase	zinc	finger	domain
AlbA_2	PF04326.14	gi|257052785|ref|YP_003130618.1|	-	3.1e-21	75.9	0.1	3.6e-21	75.7	0.1	1.0	1	0	0	1	1	1	1	Putative	DNA-binding	domain
Hyd_WA	PF06462.12	gi|257052785|ref|YP_003130618.1|	-	0.06	13.3	0.4	0.13	12.3	0.4	1.5	1	0	0	1	1	1	0	Propeller
Eco57I	PF07669.11	gi|257052786|ref|YP_003130619.1|	-	1.4e-10	41.6	0.0	2.7e-10	40.7	0.0	1.4	1	0	0	1	1	1	1	Eco57I	restriction-modification	methylase
TaqI_C	PF12950.7	gi|257052786|ref|YP_003130619.1|	-	6.4e-09	35.9	0.0	1.1e-08	35.2	0.0	1.4	1	0	0	1	1	1	1	TaqI-like	C-terminal	specificity	domain
MTS	PF05175.14	gi|257052786|ref|YP_003130619.1|	-	0.0013	18.3	0.0	0.11	12.1	0.0	2.3	1	1	0	1	1	1	1	Methyltransferase	small	domain
UPF0020	PF01170.18	gi|257052786|ref|YP_003130619.1|	-	0.0016	18.1	0.0	0.02	14.6	0.0	2.2	1	1	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
N6_Mtase	PF02384.16	gi|257052786|ref|YP_003130619.1|	-	0.0041	16.4	0.0	0.023	14.0	0.0	1.9	1	1	0	1	1	1	1	N-6	DNA	Methylase
Methyltransf_25	PF13649.6	gi|257052786|ref|YP_003130619.1|	-	0.023	15.4	0.0	0.069	13.9	0.0	1.9	1	1	0	1	1	1	0	Methyltransferase	domain
UvrD-helicase	PF00580.21	gi|257052787|ref|YP_003130620.1|	-	4.2e-50	171.0	0.3	4.3e-49	167.7	0.3	2.1	1	1	0	1	1	1	1	UvrD/REP	helicase	N-terminal	domain
UvrD_C	PF13361.6	gi|257052787|ref|YP_003130620.1|	-	8.6e-31	107.6	0.0	9.9e-19	67.9	0.0	2.2	1	1	1	2	2	2	2	UvrD-like	helicase	C-terminal	domain
AAA_19	PF13245.6	gi|257052787|ref|YP_003130620.1|	-	2.7e-24	86.2	0.0	2e-23	83.3	0.0	2.4	1	1	0	1	1	1	1	AAA	domain
UvrD_C_2	PF13538.6	gi|257052787|ref|YP_003130620.1|	-	4.1e-10	39.3	0.1	0.00013	21.7	0.1	2.7	2	0	0	2	2	2	2	UvrD-like	helicase	C-terminal	domain
PDDEXK_1	PF12705.7	gi|257052787|ref|YP_003130620.1|	-	9.1e-08	32.3	3.7	8.3e-07	29.2	0.4	2.7	2	1	1	3	3	3	1	PD-(D/E)XK	nuclease	superfamily
AAA_30	PF13604.6	gi|257052787|ref|YP_003130620.1|	-	5.3e-06	26.3	0.0	2.8e-05	23.9	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
Viral_helicase1	PF01443.18	gi|257052787|ref|YP_003130620.1|	-	0.0035	17.1	0.1	11	5.7	0.0	3.5	3	0	0	3	3	3	1	Viral	(Superfamily	1)	RNA	helicase
AAA_11	PF13086.6	gi|257052787|ref|YP_003130620.1|	-	0.0083	15.9	0.0	0.76	9.5	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_12	PF13087.6	gi|257052787|ref|YP_003130620.1|	-	0.04	13.5	0.0	0.19	11.3	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_22	PF13401.6	gi|257052787|ref|YP_003130620.1|	-	0.11	12.8	0.0	0.51	10.6	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
PhoH	PF02562.16	gi|257052787|ref|YP_003130620.1|	-	0.17	11.4	0.0	14	5.1	0.0	2.2	2	0	0	2	2	2	0	PhoH-like	protein
PDDEXK_1	PF12705.7	gi|257052788|ref|YP_003130621.1|	-	3e-12	47.0	0.1	1.3e-11	44.9	0.0	2.1	2	0	0	2	2	2	1	PD-(D/E)XK	nuclease	superfamily
YdjM	PF04307.14	gi|257052789|ref|YP_003130622.1|	-	3.2e-12	46.1	12.2	1.2e-11	44.2	12.2	1.8	1	1	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
IncE	PF17627.2	gi|257052789|ref|YP_003130622.1|	-	0.28	11.2	6.5	0.096	12.7	1.4	2.2	2	0	0	2	2	2	0	Inclusion	membrane	protein	E
VWA_2	PF13519.6	gi|257052791|ref|YP_003130624.1|	-	1.1e-08	35.6	1.0	1e-07	32.6	0.0	2.2	2	0	0	2	2	2	1	von	Willebrand	factor	type	A	domain
VWA	PF00092.28	gi|257052791|ref|YP_003130624.1|	-	5.9e-07	29.9	0.1	8.2e-07	29.4	0.1	1.3	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA_3	PF13768.6	gi|257052791|ref|YP_003130624.1|	-	0.0012	18.8	0.0	0.0023	17.9	0.0	1.5	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
SAVED	PF18145.1	gi|257052791|ref|YP_003130624.1|	-	0.07	12.9	0.2	0.11	12.3	0.2	1.3	1	0	0	1	1	1	0	SMODS-associated	and	fused	to	various	effectors	sensor	domain
DUF5070	PF16802.5	gi|257052792|ref|YP_003130625.1|	-	0.23	11.4	0.0	0.34	10.9	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5070)
Pentapeptide_3	PF13576.6	gi|257052793|ref|YP_003130626.1|	-	1.9e-09	37.5	23.2	0.0037	17.4	0.2	7.4	8	1	1	9	9	9	3	Pentapeptide	repeats	(9	copies)
Pentapeptide	PF00805.22	gi|257052793|ref|YP_003130626.1|	-	0.0017	17.9	0.4	26	4.6	0.0	5.2	5	0	0	5	5	5	1	Pentapeptide	repeats	(8	copies)
HEAT_2	PF13646.6	gi|257052795|ref|YP_003130628.1|	-	6e-19	68.2	5.2	1.9e-12	47.4	0.6	2.8	2	1	0	2	2	2	2	HEAT	repeats
HEAT	PF02985.22	gi|257052795|ref|YP_003130628.1|	-	3.5e-12	45.5	2.8	0.00087	19.4	0.0	4.6	4	0	0	4	4	4	2	HEAT	repeat
Cnd1	PF12717.7	gi|257052795|ref|YP_003130628.1|	-	2.1e-09	37.6	0.1	1.4e-05	25.2	0.0	3.0	3	0	0	3	3	3	2	non-SMC	mitotic	condensation	complex	subunit	1
HEAT_EZ	PF13513.6	gi|257052795|ref|YP_003130628.1|	-	7.8e-09	35.9	2.8	0.0048	17.4	0.1	4.3	4	0	0	4	4	4	2	HEAT-like	repeat
HEAT_PBS	PF03130.16	gi|257052795|ref|YP_003130628.1|	-	2.3e-05	24.7	1.9	0.0012	19.3	0.2	3.5	3	0	0	3	3	3	1	PBS	lyase	HEAT-like	repeat
Arm	PF00514.23	gi|257052795|ref|YP_003130628.1|	-	4.2e-05	23.4	1.5	0.055	13.5	0.0	3.9	4	0	0	4	4	4	1	Armadillo/beta-catenin-like	repeat
Adaptin_N	PF01602.20	gi|257052795|ref|YP_003130628.1|	-	0.00045	18.9	0.0	0.023	13.3	0.0	2.2	1	1	0	2	2	2	1	Adaptin	N	terminal	region
Vac14_Fab1_bd	PF12755.7	gi|257052795|ref|YP_003130628.1|	-	0.031	14.9	0.0	2.5	8.8	0.0	2.7	2	1	0	2	2	2	0	Vacuolar	14	Fab1-binding	region
ALF	PF03752.13	gi|257052795|ref|YP_003130628.1|	-	0.089	12.8	0.7	0.27	11.2	0.2	2.1	2	0	0	2	2	2	0	Short	repeats	of	unknown	function
Cohesin_HEAT	PF12765.7	gi|257052795|ref|YP_003130628.1|	-	0.12	12.7	0.3	28	5.1	0.0	2.7	2	0	0	2	2	2	0	HEAT	repeat	associated	with	sister	chromatid	cohesion
HNH_2	PF13391.6	gi|257052796|ref|YP_003130629.1|	-	2.3e-07	30.9	0.1	1.1e-06	28.7	0.1	2.2	1	0	0	1	1	1	1	HNH	endonuclease
HNH	PF01844.23	gi|257052796|ref|YP_003130629.1|	-	3.7e-05	23.8	2.4	5.2e-05	23.3	0.8	2.2	2	0	0	2	2	2	1	HNH	endonuclease
HTH_32	PF13565.6	gi|257052796|ref|YP_003130629.1|	-	0.0024	18.4	0.5	5.8	7.6	0.1	3.5	1	1	2	3	3	3	1	Homeodomain-like	domain
HTH_40	PF14493.6	gi|257052796|ref|YP_003130629.1|	-	0.0065	16.9	2.3	0.046	14.2	0.8	3.1	3	2	0	3	3	3	1	Helix-turn-helix	domain
MRP-L20	PF12824.7	gi|257052796|ref|YP_003130629.1|	-	0.017	15.3	0.0	0.07	13.3	0.0	1.9	2	0	0	2	2	2	0	Mitochondrial	ribosomal	protein	subunit	L20
Sigma70_r4_2	PF08281.12	gi|257052796|ref|YP_003130629.1|	-	0.02	14.6	0.9	0.034	13.8	0.3	1.7	2	0	0	2	2	2	0	Sigma-70,	region	4
Sigma70_r4	PF04545.16	gi|257052796|ref|YP_003130629.1|	-	0.026	14.1	0.1	0.77	9.3	0.0	2.3	2	0	0	2	2	2	0	Sigma-70,	region	4
HTH_38	PF13936.6	gi|257052796|ref|YP_003130629.1|	-	0.039	13.7	0.0	0.039	13.7	0.0	2.8	3	0	0	3	3	3	0	Helix-turn-helix	domain
DUF1390	PF07150.11	gi|257052796|ref|YP_003130629.1|	-	0.039	13.6	0.2	0.083	12.6	0.2	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1390)
HTH_10	PF04967.12	gi|257052796|ref|YP_003130629.1|	-	0.19	11.6	0.0	4.3	7.2	0.0	2.4	2	0	0	2	2	2	0	HTH	DNA	binding	domain
AAA_22	PF13401.6	gi|257052797|ref|YP_003130630.1|	-	5.8e-11	42.8	0.3	1.1e-09	38.6	0.0	2.5	1	1	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|257052797|ref|YP_003130630.1|	-	1.3e-09	38.6	9.3	5.2e-09	36.7	0.1	3.3	2	2	0	2	2	2	1	AAA	ATPase	domain
AAA_assoc_2	PF16193.5	gi|257052797|ref|YP_003130630.1|	-	6.3e-07	29.6	1.3	1.6e-06	28.4	1.3	1.7	1	0	0	1	1	1	1	AAA	C-terminal	domain
AAA	PF00004.29	gi|257052797|ref|YP_003130630.1|	-	1.4e-05	25.6	0.0	6.7e-05	23.3	0.0	2.3	1	1	1	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
ATPase_2	PF01637.18	gi|257052797|ref|YP_003130630.1|	-	3.4e-05	23.9	0.0	0.00078	19.4	0.0	2.7	1	1	2	3	3	3	1	ATPase	domain	predominantly	from	Archaea
NTPase_1	PF03266.15	gi|257052797|ref|YP_003130630.1|	-	0.00023	21.1	0.1	0.003	17.5	0.0	2.4	2	2	0	2	2	2	1	NTPase
AAA_5	PF07728.14	gi|257052797|ref|YP_003130630.1|	-	0.00088	19.3	0.0	0.003	17.6	0.0	2.0	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA_19	PF13245.6	gi|257052797|ref|YP_003130630.1|	-	0.0024	18.2	0.0	0.005	17.2	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|257052797|ref|YP_003130630.1|	-	0.0045	17.2	0.3	0.15	12.2	0.0	2.8	2	1	0	2	2	2	1	AAA	domain
Sigma54_activ_2	PF14532.6	gi|257052797|ref|YP_003130630.1|	-	0.0052	16.9	0.0	1.6	8.8	0.0	2.6	1	1	1	2	2	2	1	Sigma-54	interaction	domain
Zeta_toxin	PF06414.12	gi|257052797|ref|YP_003130630.1|	-	0.0071	15.6	0.7	3	7.1	0.0	2.6	2	1	0	2	2	2	2	Zeta	toxin
DUF815	PF05673.13	gi|257052797|ref|YP_003130630.1|	-	0.013	14.7	0.0	0.12	11.5	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF815)
AAA_7	PF12775.7	gi|257052797|ref|YP_003130630.1|	-	0.018	14.6	0.0	0.04	13.4	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
NACHT	PF05729.12	gi|257052797|ref|YP_003130630.1|	-	0.021	14.8	0.0	0.07	13.0	0.0	2.0	1	1	0	1	1	1	0	NACHT	domain
Penicillinase_R	PF03965.16	gi|257052797|ref|YP_003130630.1|	-	0.025	14.9	0.0	0.073	13.4	0.0	1.8	1	0	0	1	1	1	0	Penicillinase	repressor
NB-ARC	PF00931.22	gi|257052797|ref|YP_003130630.1|	-	0.026	13.7	0.0	0.036	13.2	0.0	1.4	1	1	0	1	1	1	0	NB-ARC	domain
AAA_18	PF13238.6	gi|257052797|ref|YP_003130630.1|	-	0.026	15.1	0.3	0.16	12.5	0.0	2.3	2	1	0	2	2	2	0	AAA	domain
ABC_tran	PF00005.27	gi|257052797|ref|YP_003130630.1|	-	0.028	14.9	0.2	0.86	10.1	0.0	2.4	1	1	1	2	2	2	0	ABC	transporter
Mg_chelatase_C	PF13335.6	gi|257052797|ref|YP_003130630.1|	-	0.03	14.9	4.8	0.064	13.9	4.8	1.5	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI	C-terminal
Cytidylate_kin	PF02224.18	gi|257052797|ref|YP_003130630.1|	-	0.03	14.0	0.7	0.19	11.4	0.0	2.4	2	1	1	3	3	3	0	Cytidylate	kinase
Bac_DnaA	PF00308.18	gi|257052797|ref|YP_003130630.1|	-	0.067	13.0	0.5	0.45	10.3	0.5	2.0	1	1	0	1	1	1	0	Bacterial	dnaA	protein
DUF2075	PF09848.9	gi|257052797|ref|YP_003130630.1|	-	0.071	12.3	0.0	0.14	11.4	0.0	1.6	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_14	PF13173.6	gi|257052797|ref|YP_003130630.1|	-	0.075	13.1	0.0	0.25	11.4	0.0	1.9	2	1	0	2	2	2	0	AAA	domain
SAP	PF02037.27	gi|257052797|ref|YP_003130630.1|	-	0.12	12.2	0.2	28	4.6	0.1	3.7	4	0	0	4	4	4	0	SAP	domain
Arg_decarbox_C	PF17944.1	gi|257052797|ref|YP_003130630.1|	-	0.24	12.0	2.0	0.77	10.4	0.2	2.5	1	1	1	2	2	2	0	Arginine	decarboxylase	C-terminal	helical	extension
GntR	PF00392.21	gi|257052798|ref|YP_003130631.1|	-	0.0038	16.8	0.0	0.18	11.5	0.0	2.3	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
HTH_IclR	PF09339.10	gi|257052798|ref|YP_003130631.1|	-	0.0051	16.6	0.0	0.27	11.1	0.0	2.2	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|257052798|ref|YP_003130631.1|	-	0.014	15.6	0.0	0.27	11.5	0.0	2.3	2	0	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR_2	PF12802.7	gi|257052798|ref|YP_003130631.1|	-	0.016	15.1	0.1	0.098	12.6	0.0	2.0	2	0	0	2	2	2	0	MarR	family
HTH_Crp_2	PF13545.6	gi|257052798|ref|YP_003130631.1|	-	0.027	14.5	0.0	0.46	10.5	0.0	2.4	3	0	0	3	3	3	0	Crp-like	helix-turn-helix	domain
Phage_NinH	PF06322.11	gi|257052798|ref|YP_003130631.1|	-	0.035	14.0	0.0	0.069	13.0	0.0	1.5	1	0	0	1	1	1	0	Phage	NinH	protein
MarR	PF01047.22	gi|257052798|ref|YP_003130631.1|	-	0.17	11.8	0.0	1.4	8.9	0.0	2.3	2	0	0	2	2	2	0	MarR	family
Rrf2	PF02082.20	gi|257052798|ref|YP_003130631.1|	-	0.19	12.1	0.0	11	6.5	0.0	2.4	2	0	0	2	2	2	0	Transcriptional	regulator
NTP_transf_5	PF14907.6	gi|257052799|ref|YP_003130632.1|	-	5.4e-06	26.2	0.0	7.2e-06	25.8	0.0	1.2	1	0	0	1	1	1	1	Uncharacterised	nucleotidyltransferase
AbiEii	PF08843.11	gi|257052799|ref|YP_003130632.1|	-	0.0017	18.3	0.8	0.005	16.8	0.8	2.0	1	1	0	1	1	1	1	Nucleotidyl	transferase	AbiEii	toxin,	Type	IV	TA	system
DUF2204	PF09970.9	gi|257052799|ref|YP_003130632.1|	-	0.028	14.1	0.2	0.045	13.4	0.2	1.3	1	0	0	1	1	1	0	Nucleotidyl	transferase	of	unknown	function	(DUF2204)
NTP_transf_2	PF01909.23	gi|257052800|ref|YP_003130633.1|	-	1.7e-05	25.1	0.1	4.1e-05	23.8	0.1	1.7	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
Polbeta	PF18765.1	gi|257052800|ref|YP_003130633.1|	-	0.0013	18.7	0.1	0.0033	17.5	0.1	1.8	1	0	0	1	1	1	1	Polymerase	beta,	Nucleotidyltransferase
UPF0180	PF03698.13	gi|257052800|ref|YP_003130633.1|	-	0.069	13.3	1.0	0.19	11.9	0.4	2.1	2	1	0	2	2	2	0	Uncharacterised	protein	family	(UPF0180)
MtrB	PF05440.12	gi|257052800|ref|YP_003130633.1|	-	0.19	12.1	1.3	0.36	11.3	0.2	2.0	2	0	0	2	2	2	0	Tetrahydromethanopterin	S-methyltransferase	subunit	B
UvrD-helicase	PF00580.21	gi|257052802|ref|YP_003130635.1|	-	9.5e-47	160.0	0.0	1.5e-46	159.4	0.0	1.3	1	0	0	1	1	1	1	UvrD/REP	helicase	N-terminal	domain
AAA_19	PF13245.6	gi|257052802|ref|YP_003130635.1|	-	3.8e-28	98.7	0.0	1.5e-27	96.7	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
UvrD_C	PF13361.6	gi|257052802|ref|YP_003130635.1|	-	9.9e-14	51.5	0.0	8.6e-10	38.5	0.0	2.6	2	0	0	2	2	2	2	UvrD-like	helicase	C-terminal	domain
AAA_30	PF13604.6	gi|257052802|ref|YP_003130635.1|	-	3e-06	27.1	0.0	0.0015	18.3	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
UvrD_C_2	PF13538.6	gi|257052802|ref|YP_003130635.1|	-	4.4e-06	26.4	1.2	0.081	12.8	0.1	3.2	3	0	0	3	3	3	2	UvrD-like	helicase	C-terminal	domain
Viral_helicase1	PF01443.18	gi|257052802|ref|YP_003130635.1|	-	0.0035	17.1	0.2	4.1	7.1	0.0	3.3	3	1	0	3	3	3	2	Viral	(Superfamily	1)	RNA	helicase
PEP-utilisers_N	PF05524.13	gi|257052802|ref|YP_003130635.1|	-	0.013	15.7	7.3	0.84	9.8	0.1	4.0	4	1	0	4	4	4	0	PEP-utilising	enzyme,	N-terminal
cwf21	PF08312.12	gi|257052802|ref|YP_003130635.1|	-	0.75	10.0	3.2	0.85	9.8	0.0	2.8	3	1	0	3	3	3	0	cwf21	domain
ADP_ribosyl_GH	PF03747.14	gi|257052803|ref|YP_003130636.1|	-	1.1e-71	242.0	5.1	1.3e-71	241.8	5.1	1.0	1	0	0	1	1	1	1	ADP-ribosylglycohydrolase
SurE	PF01975.17	gi|257052803|ref|YP_003130636.1|	-	0.11	12.3	0.0	0.16	11.7	0.0	1.3	1	0	0	1	1	1	0	Survival	protein	SurE
Gly-zipper_YMGG	PF13441.6	gi|257052803|ref|YP_003130636.1|	-	0.31	10.8	7.9	1.7	8.4	6.3	2.4	2	0	0	2	2	2	0	YMGG-like	Gly-zipper
zinc_ribbon_9	PF14369.6	gi|257052804|ref|YP_003130637.1|	-	0.0035	17.6	1.3	0.0062	16.8	0.5	1.8	2	0	0	2	2	2	1	zinc-ribbon
RHH_1	PF01402.21	gi|257052806|ref|YP_003130639.1|	-	0.036	14.0	0.3	0.063	13.2	0.2	1.4	2	0	0	2	2	2	0	Ribbon-helix-helix	protein,	copG	family
DUF4777	PF16007.5	gi|257052806|ref|YP_003130639.1|	-	0.13	12.5	0.1	0.15	12.3	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4777)
Phage_integrase	PF00589.22	gi|257052808|ref|YP_003130641.1|	-	1.3e-17	64.1	0.0	3.2e-17	62.8	0.0	1.6	2	0	0	2	2	2	1	Phage	integrase	family
DZR	PF12773.7	gi|257052808|ref|YP_003130641.1|	-	0.00075	19.5	0.8	0.0014	18.6	0.8	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_15	PF17032.5	gi|257052808|ref|YP_003130641.1|	-	0.042	14.6	0.1	0.083	13.7	0.1	1.5	1	0	0	1	1	1	0	zinc-ribbon	family
zinc_ribbon_2	PF13240.6	gi|257052808|ref|YP_003130641.1|	-	0.87	9.4	6.2	0.21	11.3	2.9	1.7	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|257052808|ref|YP_003130641.1|	-	0.95	9.0	2.9	2.1	7.9	2.9	1.5	1	0	0	1	1	1	0	zinc-ribbon	domain
DUF4404	PF14357.6	gi|257052808|ref|YP_003130641.1|	-	4.7	7.9	6.2	0.98	10.1	0.6	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4404)
YuiB	PF14068.6	gi|257052810|ref|YP_003130643.1|	-	0.21	12.2	4.2	0.21	12.2	0.6	2.6	1	1	1	2	2	2	0	Putative	membrane	protein
Response_reg	PF00072.24	gi|257052812|ref|YP_003130645.1|	-	3.7e-18	65.7	0.5	5.3e-18	65.2	0.5	1.2	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HalX	PF08663.10	gi|257052812|ref|YP_003130645.1|	-	3.9e-09	36.7	6.0	1e-08	35.3	6.0	1.7	1	0	0	1	1	1	1	HalX	domain
VIT1	PF01988.19	gi|257052812|ref|YP_003130645.1|	-	0.071	13.0	0.4	0.11	12.3	0.4	1.3	1	0	0	1	1	1	0	VIT	family
HTH_IclR	PF09339.10	gi|257052813|ref|YP_003130646.1|	-	4.9e-07	29.4	0.0	7.6e-07	28.8	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|257052813|ref|YP_003130646.1|	-	0.00014	21.7	0.1	0.0002	21.2	0.1	1.3	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|257052813|ref|YP_003130646.1|	-	0.0011	18.8	0.0	0.0017	18.2	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_Crp_2	PF13545.6	gi|257052813|ref|YP_003130646.1|	-	0.0021	18.0	0.0	0.0037	17.2	0.0	1.4	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_24	PF13412.6	gi|257052813|ref|YP_003130646.1|	-	0.0048	16.4	0.0	0.0082	15.7	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Dimerisation2	PF16864.5	gi|257052813|ref|YP_003130646.1|	-	0.0072	16.3	0.0	0.011	15.8	0.0	1.2	1	0	0	1	1	1	1	Dimerisation	domain
HTH_20	PF12840.7	gi|257052813|ref|YP_003130646.1|	-	0.013	15.5	0.4	0.021	14.9	0.4	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|257052813|ref|YP_003130646.1|	-	0.035	14.0	0.0	0.055	13.3	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
SRP19	PF01922.17	gi|257052813|ref|YP_003130646.1|	-	0.16	12.9	0.0	0.29	12.1	0.0	1.4	1	1	0	1	1	1	0	SRP19	protein
HisKA_7TM	PF16927.5	gi|257052814|ref|YP_003130647.1|	-	8.1e-10	39.1	19.5	1.1e-09	38.7	19.5	1.2	1	0	0	1	1	1	1	N-terminal	7TM	region	of	histidine	kinase
PAS_4	PF08448.10	gi|257052814|ref|YP_003130647.1|	-	3.8e-09	36.8	0.2	1.6e-08	34.8	0.2	2.1	1	1	0	1	1	1	1	PAS	fold
PAS_9	PF13426.7	gi|257052814|ref|YP_003130647.1|	-	3.6e-06	27.2	0.0	7.7e-06	26.1	0.0	1.6	1	0	0	1	1	1	1	PAS	domain
PAS_8	PF13188.7	gi|257052814|ref|YP_003130647.1|	-	5.3e-05	23.1	0.0	0.00035	20.5	0.0	2.3	2	0	0	2	2	2	1	PAS	domain
PAS	PF00989.25	gi|257052814|ref|YP_003130647.1|	-	8.6e-05	22.5	0.0	0.00028	20.8	0.0	1.9	1	1	0	1	1	1	1	PAS	fold
PAS_7	PF12860.7	gi|257052814|ref|YP_003130647.1|	-	0.00016	21.8	0.2	0.074	13.2	0.2	2.5	1	1	1	2	2	2	2	PAS	fold
HATPase_c	PF02518.26	gi|257052815|ref|YP_003130648.1|	-	1.8e-14	54.2	0.0	3.1e-14	53.4	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.6	gi|257052815|ref|YP_003130648.1|	-	2.6e-09	37.1	0.0	5.8e-09	36.0	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
PAS_8	PF13188.7	gi|257052815|ref|YP_003130648.1|	-	4.8e-07	29.7	0.0	1.8e-06	27.8	0.0	2.0	1	0	0	1	1	1	1	PAS	domain
HisKA_7TM	PF16927.5	gi|257052815|ref|YP_003130648.1|	-	1.1e-06	28.9	13.9	1.6e-06	28.3	13.9	1.3	1	0	0	1	1	1	1	N-terminal	7TM	region	of	histidine	kinase
PAS_4	PF08448.10	gi|257052815|ref|YP_003130648.1|	-	4.2e-05	23.7	1.7	0.0011	19.2	1.7	2.7	1	1	0	1	1	1	1	PAS	fold
HisKA_4TM	PF16926.5	gi|257052815|ref|YP_003130648.1|	-	0.00037	20.1	0.2	0.00037	20.1	0.2	2.8	3	1	0	3	3	3	1	Archaeal	4TM	region	of	histidine	kinase
HATPase_c_3	PF13589.6	gi|257052815|ref|YP_003130648.1|	-	0.00046	20.0	0.0	0.00081	19.2	0.0	1.3	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|257052815|ref|YP_003130648.1|	-	0.0013	18.8	0.2	0.0027	17.7	0.2	1.6	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
PAS	PF00989.25	gi|257052815|ref|YP_003130648.1|	-	0.002	18.1	0.0	0.0042	17.1	0.0	1.6	1	0	0	1	1	1	1	PAS	fold
HATPase_c_5	PF14501.6	gi|257052815|ref|YP_003130648.1|	-	0.04	13.8	0.0	0.065	13.2	0.0	1.3	1	0	0	1	1	1	0	GHKL	domain
TAT_signal	PF10518.9	gi|257052816|ref|YP_003130649.1|	-	0.059	13.2	1.5	0.15	12.0	1.5	1.7	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
RDD	PF06271.12	gi|257052817|ref|YP_003130650.1|	-	7.3e-20	71.6	1.1	8.2e-20	71.4	1.1	1.0	1	0	0	1	1	1	1	RDD	family
TOBE_3	PF12857.7	gi|257052817|ref|YP_003130650.1|	-	0.068	13.1	0.0	0.11	12.4	0.0	1.3	1	0	0	1	1	1	0	TOBE-like	domain
DUF5518	PF17647.1	gi|257052818|ref|YP_003130651.1|	-	1.2e-13	51.3	26.5	1.2e-13	51.3	26.5	2.8	2	1	0	2	2	2	1	Family	of	unknown	function	(DUF5518)
DUF4229	PF14012.6	gi|257052818|ref|YP_003130651.1|	-	0.00076	19.5	1.8	0.00076	19.5	1.8	2.7	3	1	0	3	3	3	1	Protein	of	unknown	function	(DUF4229)
Trp_oprn_chp	PF09534.10	gi|257052818|ref|YP_003130651.1|	-	2.5	7.9	24.5	1.3	8.7	7.0	2.9	1	1	1	2	2	2	0	Tryptophan-associated	transmembrane	protein	(Trp_oprn_chp)
Polysacc_synt_C	PF14667.6	gi|257052818|ref|YP_003130651.1|	-	8.1	6.5	21.4	0.3	11.1	10.9	2.6	3	0	0	3	3	3	0	Polysaccharide	biosynthesis	C-terminal	domain
BAT	PF15915.5	gi|257052819|ref|YP_003130652.1|	-	1.9e-33	115.6	14.2	1.9e-33	115.6	14.2	2.6	2	0	0	2	2	2	1	GAF	and	HTH_10	associated	domain
GAF_2	PF13185.6	gi|257052819|ref|YP_003130652.1|	-	2.4e-16	60.3	0.6	1.2e-15	58.0	0.3	2.4	2	0	0	2	2	2	1	GAF	domain
HTH_10	PF04967.12	gi|257052819|ref|YP_003130652.1|	-	2.4e-14	52.9	0.0	5.5e-14	51.7	0.0	1.7	1	0	0	1	1	1	1	HTH	DNA	binding	domain
GAF_3	PF13492.6	gi|257052819|ref|YP_003130652.1|	-	2.6e-07	31.0	0.0	9.1e-07	29.3	0.0	2.0	1	0	0	1	1	1	1	GAF	domain
GAF	PF01590.26	gi|257052819|ref|YP_003130652.1|	-	4.1e-05	24.2	0.0	0.00013	22.6	0.0	1.9	2	0	0	2	2	2	1	GAF	domain
PAS_4	PF08448.10	gi|257052819|ref|YP_003130652.1|	-	0.00024	21.3	3.4	0.001	19.3	0.2	3.2	2	1	1	3	3	3	1	PAS	fold
HTH_20	PF12840.7	gi|257052819|ref|YP_003130652.1|	-	0.00061	19.8	0.1	0.022	14.8	0.0	3.1	2	1	1	3	3	3	1	Helix-turn-helix	domain
DotD	PF16816.5	gi|257052819|ref|YP_003130652.1|	-	0.0063	16.5	0.0	0.024	14.6	0.0	1.9	2	0	0	2	2	2	1	DotD	protein
PAS	PF00989.25	gi|257052819|ref|YP_003130652.1|	-	0.066	13.2	0.2	0.5	10.4	0.0	2.4	3	0	0	3	3	3	0	PAS	fold
HTH_1	PF00126.27	gi|257052819|ref|YP_003130652.1|	-	0.097	12.6	0.5	0.32	11.0	0.1	2.1	2	0	0	2	2	2	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
AIM24	PF01987.17	gi|257052820|ref|YP_003130653.1|	-	7.7e-25	87.9	0.0	9.3e-25	87.6	0.0	1.0	1	0	0	1	1	1	1	Mitochondrial	biogenesis	AIM24
HATPase_c	PF02518.26	gi|257052821|ref|YP_003130654.1|	-	5.1e-17	62.4	0.0	8.8e-17	61.6	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|257052821|ref|YP_003130654.1|	-	3.2e-08	33.5	1.1	6.5e-08	32.5	0.5	1.8	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_3	PF13589.6	gi|257052821|ref|YP_003130654.1|	-	0.011	15.5	0.0	0.019	14.8	0.0	1.3	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_8	PF13188.7	gi|257052821|ref|YP_003130654.1|	-	0.028	14.4	0.0	0.082	13.0	0.0	1.8	1	0	0	1	1	1	0	PAS	domain
HTH_20	PF12840.7	gi|257052822|ref|YP_003130655.1|	-	1.2e-07	31.6	0.7	2e-07	30.9	0.7	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|257052822|ref|YP_003130655.1|	-	3.5e-07	30.0	0.0	4.9e-07	29.5	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.19	gi|257052822|ref|YP_003130655.1|	-	1.2e-06	28.4	0.0	1.7e-06	27.8	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|257052822|ref|YP_003130655.1|	-	0.00011	22.1	0.3	0.00021	21.1	0.3	1.5	1	0	0	1	1	1	1	MarR	family
PadR	PF03551.14	gi|257052822|ref|YP_003130655.1|	-	0.00015	21.7	0.0	0.00042	20.2	0.0	1.7	1	1	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_IclR	PF09339.10	gi|257052822|ref|YP_003130655.1|	-	0.00026	20.7	1.1	0.00026	20.7	1.1	2.0	2	1	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_11	PF08279.12	gi|257052822|ref|YP_003130655.1|	-	0.0016	18.3	0.1	0.0029	17.5	0.1	1.4	1	0	0	1	1	1	1	HTH	domain
FUR	PF01475.19	gi|257052822|ref|YP_003130655.1|	-	0.012	15.7	0.0	0.017	15.2	0.0	1.2	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
HTH_24	PF13412.6	gi|257052822|ref|YP_003130655.1|	-	0.029	13.9	0.1	0.079	12.5	0.1	1.7	1	1	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|257052822|ref|YP_003130655.1|	-	0.04	13.7	0.5	0.11	12.4	0.5	1.7	1	1	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
Replic_Relax	PF13814.6	gi|257052822|ref|YP_003130655.1|	-	0.1	12.6	0.6	0.13	12.3	0.1	1.5	2	0	0	2	2	2	0	Replication-relaxation
DUF2092	PF09865.9	gi|257052823|ref|YP_003130656.1|	-	1.1e-07	31.5	0.1	2e-07	30.6	0.1	1.4	1	0	0	1	1	1	1	Predicted	periplasmic	protein	(DUF2092)
DUF4367	PF14285.6	gi|257052823|ref|YP_003130656.1|	-	0.00019	21.8	0.0	0.00065	20.1	0.0	2.0	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4367)
LolA_like	PF17131.4	gi|257052823|ref|YP_003130656.1|	-	0.0013	18.5	0.3	0.013	15.2	0.0	2.3	2	1	1	3	3	3	1	Outer	membrane	lipoprotein-sorting	protein
LolA	PF03548.15	gi|257052823|ref|YP_003130656.1|	-	0.0057	16.4	0.0	0.25	11.0	0.0	2.3	2	0	0	2	2	2	1	Outer	membrane	lipoprotein	carrier	protein	LolA
MucB_RseB	PF03888.14	gi|257052823|ref|YP_003130656.1|	-	0.03	13.9	0.0	0.26	10.8	0.0	2.1	2	0	0	2	2	2	0	MucB/RseB	N-terminal	domain
HMA	PF00403.26	gi|257052824|ref|YP_003130657.1|	-	1.8e-17	63.5	1.1	2e-17	63.4	1.1	1.0	1	0	0	1	1	1	1	Heavy-metal-associated	domain
HTH_AsnC-type	PF13404.6	gi|257052825|ref|YP_003130658.1|	-	1e-15	57.3	0.1	1e-15	57.3	0.1	2.6	3	0	0	3	3	3	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.6	gi|257052825|ref|YP_003130658.1|	-	1.8e-14	53.0	0.0	5.2e-14	51.5	0.0	1.8	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|257052825|ref|YP_003130658.1|	-	2.4e-06	27.4	0.1	4.7e-06	26.4	0.1	1.5	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.22	gi|257052825|ref|YP_003130658.1|	-	2.4e-06	27.4	0.0	3.5e-06	26.8	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.20	gi|257052825|ref|YP_003130658.1|	-	2.1e-05	24.3	0.0	3.1e-05	23.8	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|257052825|ref|YP_003130658.1|	-	2.8e-05	24.1	0.4	7.9e-05	22.6	0.0	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
Arc_trans_TRASH	PF08394.10	gi|257052825|ref|YP_003130658.1|	-	0.00024	21.4	2.1	0.00035	20.8	2.1	1.3	1	0	0	1	1	1	1	Archaeal	TRASH	domain
YHS	PF04945.13	gi|257052825|ref|YP_003130658.1|	-	0.00028	20.9	0.2	0.00048	20.2	0.2	1.3	1	0	0	1	1	1	1	YHS	domain
LIM	PF00412.22	gi|257052825|ref|YP_003130658.1|	-	0.0022	18.2	0.7	0.0038	17.4	0.7	1.4	1	0	0	1	1	1	1	LIM	domain
TrmB	PF01978.19	gi|257052825|ref|YP_003130658.1|	-	0.0024	17.7	0.0	0.0046	16.8	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|257052825|ref|YP_003130658.1|	-	0.0026	17.5	0.0	0.0046	16.7	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
zf-FCS	PF06467.14	gi|257052825|ref|YP_003130658.1|	-	0.0071	16.3	1.7	0.012	15.5	1.1	1.7	2	0	0	2	2	2	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
HTH_Crp_2	PF13545.6	gi|257052825|ref|YP_003130658.1|	-	0.06	13.3	0.0	0.11	12.5	0.0	1.4	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
Sigma70_r4	PF04545.16	gi|257052825|ref|YP_003130658.1|	-	0.062	12.8	0.3	0.35	10.4	0.0	2.1	2	0	0	2	2	2	0	Sigma-70,	region	4
ATPase-cat_bd	PF12156.8	gi|257052825|ref|YP_003130658.1|	-	0.071	13.9	1.8	0.13	13.0	1.8	1.4	1	0	0	1	1	1	0	Putative	metal-binding	domain	of	cation	transport	ATPase
HTH_34	PF13601.6	gi|257052825|ref|YP_003130658.1|	-	0.074	13.2	0.0	0.12	12.5	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_27	PF13463.6	gi|257052825|ref|YP_003130658.1|	-	0.12	12.9	0.0	0.25	11.9	0.0	1.7	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
Crp	PF00325.20	gi|257052825|ref|YP_003130658.1|	-	0.13	12.0	0.0	0.3	10.8	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	crp	family
Hydrolase	PF00702.26	gi|257052826|ref|YP_003130659.1|	-	5.6e-50	170.5	8.3	5.6e-50	170.5	8.3	2.0	3	0	0	3	3	3	1	haloacid	dehalogenase-like	hydrolase
E1-E2_ATPase	PF00122.20	gi|257052826|ref|YP_003130659.1|	-	2.6e-48	163.9	1.7	6.8e-48	162.6	1.7	1.8	1	0	0	1	1	1	1	E1-E2	ATPase
HMA	PF00403.26	gi|257052826|ref|YP_003130659.1|	-	2.3e-24	85.6	0.7	3.3e-12	46.6	0.0	3.0	3	0	0	3	3	3	2	Heavy-metal-associated	domain
Hydrolase_3	PF08282.12	gi|257052826|ref|YP_003130659.1|	-	6.1e-08	32.7	1.4	0.00073	19.3	0.7	2.6	2	1	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|257052826|ref|YP_003130659.1|	-	4.5e-06	27.2	0.2	2e-05	25.0	0.1	2.2	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_6	PF13344.6	gi|257052826|ref|YP_003130659.1|	-	4.7e-05	23.4	0.5	0.00044	20.3	0.0	3.0	4	0	0	4	4	4	1	Haloacid	dehalogenase-like	hydrolase
HAD_2	PF13419.6	gi|257052826|ref|YP_003130659.1|	-	0.16	12.0	0.1	0.87	9.7	0.1	2.1	1	1	0	1	1	1	0	Haloacid	dehalogenase-like	hydrolase
SLS	PF14611.6	gi|257052826|ref|YP_003130659.1|	-	0.18	11.6	0.0	9.9	5.9	0.1	2.2	2	0	0	2	2	2	0	Mitochondrial	inner-membrane-bound	regulator
NAD_binding_7	PF13241.6	gi|257052827|ref|YP_003130660.1|	-	7e-22	77.8	0.0	1.2e-21	77.1	0.0	1.4	1	0	0	1	1	1	1	Putative	NAD(P)-binding
CysG_dimeriser	PF10414.9	gi|257052827|ref|YP_003130660.1|	-	9.1e-07	28.5	2.4	9.1e-07	28.5	2.4	1.8	2	0	0	2	2	2	1	Sirohaem	synthase	dimerisation	region
Sirohm_synth_M	PF14824.6	gi|257052827|ref|YP_003130660.1|	-	0.0012	18.3	0.0	0.0022	17.4	0.0	1.5	1	0	0	1	1	1	1	Sirohaem	biosynthesis	protein	central
TPR_4	PF07721.14	gi|257052827|ref|YP_003130660.1|	-	0.041	14.5	0.6	0.041	14.5	0.6	2.3	2	0	0	2	2	2	0	Tetratricopeptide	repeat
Abhydrolase_6	PF12697.7	gi|257052827|ref|YP_003130660.1|	-	0.13	12.9	7.3	0.16	12.6	1.1	2.2	1	1	1	2	2	2	0	Alpha/beta	hydrolase	family
TPR_14	PF13428.6	gi|257052827|ref|YP_003130660.1|	-	0.28	12.1	2.3	0.73	10.8	0.3	2.6	2	1	0	2	2	2	0	Tetratricopeptide	repeat
NifU	PF01106.17	gi|257052829|ref|YP_003130662.1|	-	0.087	13.0	0.2	0.18	12.0	0.2	1.5	1	0	0	1	1	1	0	NifU-like	domain
NIR_SIR	PF01077.22	gi|257052830|ref|YP_003130663.1|	-	7.3e-42	142.6	0.0	1.4e-30	105.9	0.0	2.3	2	0	0	2	2	2	2	Nitrite	and	sulphite	reductase	4Fe-4S	domain
NIR_SIR_ferr	PF03460.17	gi|257052830|ref|YP_003130663.1|	-	3e-34	116.7	0.2	2.5e-17	62.4	0.0	3.3	2	1	0	2	2	2	2	Nitrite/Sulfite	reductase	ferredoxin-like	half	domain
LIP	PF03583.14	gi|257052830|ref|YP_003130663.1|	-	0.19	11.0	0.0	0.34	10.2	0.0	1.4	1	0	0	1	1	1	0	Secretory	lipase
BssS	PF13991.6	gi|257052831|ref|YP_003130664.1|	-	0.064	13.3	0.1	0.083	13.0	0.1	1.3	1	0	0	1	1	1	0	BssS	protein	family
COMM_domain	PF07258.14	gi|257052831|ref|YP_003130664.1|	-	0.069	13.3	0.1	0.15	12.2	0.1	1.6	1	1	0	1	1	1	0	COMM	domain
CbiX	PF01903.17	gi|257052832|ref|YP_003130665.1|	-	9.7e-37	125.6	0.0	2.6e-17	63.1	0.0	2.3	2	0	0	2	2	2	2	CbiX
DR2241	PF18069.1	gi|257052832|ref|YP_003130665.1|	-	3.3e-23	81.7	0.3	3.3e-23	81.7	0.3	2.3	3	0	0	3	3	3	1	DR2241	stabilising	domain
Fer4_23	PF18009.1	gi|257052832|ref|YP_003130665.1|	-	1.7e-18	66.8	0.3	3.5e-18	65.8	0.3	1.6	1	0	0	1	1	1	1	4Fe-4S	iron-sulfur	cluster	binding	domain
CbiK	PF06180.11	gi|257052832|ref|YP_003130665.1|	-	1.1e-06	28.1	0.0	0.00046	19.6	0.0	2.1	2	0	0	2	2	2	2	Cobalt	chelatase	(CbiK)
Ferrochelatase	PF00762.19	gi|257052832|ref|YP_003130665.1|	-	0.18	10.8	0.0	0.35	9.9	0.0	1.4	1	1	0	1	1	1	0	Ferrochelatase
TP_methylase	PF00590.20	gi|257052833|ref|YP_003130666.1|	-	5.2e-50	170.3	6.2	7e-50	169.9	6.2	1.2	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
DUF4350	PF14258.6	gi|257052833|ref|YP_003130666.1|	-	0.018	15.5	0.0	0.049	14.1	0.0	1.8	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4350)
Glycos_transf_3	PF00591.21	gi|257052834|ref|YP_003130667.1|	-	2.8e-28	99.2	0.0	4.2e-28	98.6	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family,	a/b	domain
Glycos_trans_3N	PF02885.17	gi|257052834|ref|YP_003130667.1|	-	4.9e-07	29.5	0.1	1.2e-06	28.2	0.1	1.6	1	0	0	1	1	1	1	Glycosyl	transferase	family,	helical	bundle	domain
Fer4_15	PF13459.6	gi|257052835|ref|YP_003130668.1|	-	0.00032	21.4	0.5	0.00074	20.2	0.2	1.8	1	1	0	1	1	1	1	4Fe-4S	single	cluster	domain
Seryl_tRNA_N	PF02403.22	gi|257052836|ref|YP_003130669.1|	-	1.5e-29	102.4	4.6	2.5e-29	101.7	4.6	1.4	1	0	0	1	1	1	1	Seryl-tRNA	synthetase	N-terminal	domain
tRNA-synt_2b	PF00587.25	gi|257052836|ref|YP_003130669.1|	-	1.8e-26	93.2	0.1	4.4e-26	91.9	0.0	1.6	2	0	0	2	2	2	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
LUC7	PF03194.15	gi|257052836|ref|YP_003130669.1|	-	0.018	14.7	0.2	0.026	14.2	0.2	1.2	1	0	0	1	1	1	0	LUC7	N_terminus
FapA	PF03961.13	gi|257052836|ref|YP_003130669.1|	-	0.026	13.1	1.8	0.038	12.6	1.8	1.1	1	0	0	1	1	1	0	Flagellar	Assembly	Protein	A
tRNA-synt_His	PF13393.6	gi|257052836|ref|YP_003130669.1|	-	0.038	13.3	1.3	0.26	10.5	0.0	2.1	2	0	0	2	2	2	0	Histidyl-tRNA	synthetase
DUF1771	PF08590.10	gi|257052836|ref|YP_003130669.1|	-	0.056	13.8	1.8	0.2	12.1	1.3	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1771)
Fmp27_WPPW	PF10359.9	gi|257052836|ref|YP_003130669.1|	-	0.53	9.1	1.9	0.78	8.5	1.9	1.1	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
HlyD_2	PF12700.7	gi|257052836|ref|YP_003130669.1|	-	0.95	8.1	2.4	1.3	7.6	2.4	1.1	1	0	0	1	1	1	0	HlyD	family	secretion	protein
DUF4763	PF15960.5	gi|257052836|ref|YP_003130669.1|	-	1	8.6	5.9	2.1	7.6	5.9	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4763)
ZapB	PF06005.12	gi|257052836|ref|YP_003130669.1|	-	9.2	6.8	17.2	51	4.4	8.8	3.2	2	1	1	3	3	3	0	Cell	division	protein	ZapB
Lactamase_B	PF00753.27	gi|257052837|ref|YP_003130670.1|	-	2.9e-10	40.5	10.8	5.6e-09	36.3	10.0	2.3	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|257052837|ref|YP_003130670.1|	-	0.00035	20.1	4.1	0.0022	17.5	4.1	2.1	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
GST_C_2	PF13410.6	gi|257052837|ref|YP_003130670.1|	-	0.16	12.0	0.6	15	5.7	0.1	2.7	2	1	0	2	2	2	0	Glutathione	S-transferase,	C-terminal	domain
DUF99	PF01949.16	gi|257052839|ref|YP_003130672.1|	-	2.7e-60	202.9	0.0	3e-60	202.8	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF99
UDG	PF03167.19	gi|257052840|ref|YP_003130673.1|	-	3e-38	131.2	0.0	3.3e-38	131.1	0.0	1.0	1	0	0	1	1	1	1	Uracil	DNA	glycosylase	superfamily
DUF1127	PF06568.11	gi|257052840|ref|YP_003130673.1|	-	0.11	12.2	1.4	0.23	11.2	1.4	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1127)
TraC	PF07820.12	gi|257052841|ref|YP_003130674.1|	-	0.071	13.4	0.1	0.6	10.5	0.0	2.4	2	0	0	2	2	2	0	TraC-like	protein
LST1	PF05083.13	gi|257052841|ref|YP_003130674.1|	-	0.11	12.8	0.1	0.26	11.6	0.1	1.6	1	0	0	1	1	1	0	LST-1	protein
Response_reg	PF00072.24	gi|257052842|ref|YP_003130675.1|	-	5.7e-17	61.9	0.1	1e-16	61.1	0.1	1.4	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HalX	PF08663.10	gi|257052842|ref|YP_003130675.1|	-	4.8e-11	42.8	6.3	4.8e-11	42.8	6.3	1.8	2	0	0	2	2	2	1	HalX	domain
HAUS2	PF15003.6	gi|257052842|ref|YP_003130675.1|	-	0.049	13.3	0.3	0.072	12.8	0.3	1.2	1	0	0	1	1	1	0	HAUS	augmin-like	complex	subunit	2
DUF2312	PF10073.9	gi|257052842|ref|YP_003130675.1|	-	0.059	13.0	0.5	0.059	13.0	0.5	1.9	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2312)
Seryl_tRNA_N	PF02403.22	gi|257052842|ref|YP_003130675.1|	-	0.078	13.2	0.9	0.15	12.3	0.9	1.4	1	0	0	1	1	1	0	Seryl-tRNA	synthetase	N-terminal	domain
ABC_tran_CTD	PF16326.5	gi|257052842|ref|YP_003130675.1|	-	0.084	13.1	2.3	0.084	13.1	2.3	2.3	1	1	1	2	2	2	0	ABC	transporter	C-terminal	domain
Lipase_GDSL_2	PF13472.6	gi|257052842|ref|YP_003130675.1|	-	0.085	13.2	0.0	0.17	12.2	0.0	1.6	1	1	0	1	1	1	0	GDSL-like	Lipase/Acylhydrolase	family
Fer4_24	PF18109.1	gi|257052842|ref|YP_003130675.1|	-	0.15	12.3	1.5	0.38	11.1	1.5	1.7	1	0	0	1	1	1	0	Ferredoxin	I	4Fe-4S	cluster	domain
HisKA_7TM	PF16927.5	gi|257052843|ref|YP_003130676.1|	-	3.2e-21	76.4	17.9	4.1e-21	76.0	17.9	1.1	1	0	0	1	1	1	1	N-terminal	7TM	region	of	histidine	kinase
PAS_4	PF08448.10	gi|257052843|ref|YP_003130676.1|	-	5.2e-19	68.5	8.1	5.9e-13	49.0	0.6	4.0	3	1	0	3	3	3	2	PAS	fold
HATPase_c	PF02518.26	gi|257052843|ref|YP_003130676.1|	-	3e-17	63.1	0.0	9.4e-17	61.5	0.0	1.9	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS	PF00989.25	gi|257052843|ref|YP_003130676.1|	-	8.7e-16	57.9	0.4	1.6e-09	37.7	0.0	4.1	3	1	0	3	3	3	2	PAS	fold
PAS_9	PF13426.7	gi|257052843|ref|YP_003130676.1|	-	3.5e-13	49.7	0.0	4.2e-08	33.4	0.0	3.2	2	1	0	2	2	2	2	PAS	domain
PAS_8	PF13188.7	gi|257052843|ref|YP_003130676.1|	-	4.5e-11	42.5	0.3	8.4e-06	25.7	0.0	3.2	3	0	0	3	3	3	2	PAS	domain
PAS_3	PF08447.12	gi|257052843|ref|YP_003130676.1|	-	1.5e-10	41.2	0.1	8.1e-10	38.9	0.0	2.3	3	0	0	3	3	2	1	PAS	fold
HisKA	PF00512.25	gi|257052843|ref|YP_003130676.1|	-	9.1e-09	35.2	0.7	9.1e-09	35.2	0.7	2.1	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_7	PF12860.7	gi|257052843|ref|YP_003130676.1|	-	0.00096	19.3	1.6	0.72	10.0	0.0	3.7	2	2	1	4	4	4	1	PAS	fold
PAS_10	PF13596.6	gi|257052843|ref|YP_003130676.1|	-	0.0014	19.1	0.0	0.01	16.4	0.0	2.4	3	0	0	3	3	3	1	PAS	domain
HATPase_c_2	PF13581.6	gi|257052843|ref|YP_003130676.1|	-	0.0025	17.8	0.1	0.0063	16.5	0.1	1.6	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
TFIIB_C_1	PF18542.1	gi|257052843|ref|YP_003130676.1|	-	0.003	17.6	0.2	0.0085	16.1	0.2	1.7	1	0	0	1	1	1	1	Transcription	factor	IIB	C-terminal	module	1
HATPase_c_3	PF13589.6	gi|257052843|ref|YP_003130676.1|	-	0.053	13.3	0.0	0.14	12.0	0.0	1.7	2	0	0	2	2	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
VID27_N	PF17748.1	gi|257052843|ref|YP_003130676.1|	-	0.054	13.3	0.0	0.12	12.2	0.0	1.5	1	0	0	1	1	1	0	VID27	N-terminal	region
Thiamine_BP	PF01910.17	gi|257052843|ref|YP_003130676.1|	-	0.94	9.4	2.7	15	5.6	0.0	3.0	2	1	1	3	3	3	0	Thiamine-binding	protein
CBS	PF00571.28	gi|257052844|ref|YP_003130677.1|	-	8e-16	58.2	0.3	4.4e-08	33.4	0.0	2.2	2	0	0	2	2	2	2	CBS	domain
H_kinase_N	PF12282.8	gi|257052844|ref|YP_003130677.1|	-	0.067	13.1	0.0	0.21	11.5	0.0	1.8	2	0	0	2	2	2	0	Signal	transduction	histidine	kinase
Response_reg	PF00072.24	gi|257052845|ref|YP_003130678.1|	-	1.3e-20	73.7	0.2	2e-20	73.0	0.2	1.3	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HalX	PF08663.10	gi|257052845|ref|YP_003130678.1|	-	1.3e-09	38.3	1.7	3.5e-09	36.8	0.3	2.3	1	1	1	2	2	2	1	HalX	domain
PAS_4	PF08448.10	gi|257052846|ref|YP_003130679.1|	-	1.1e-12	48.1	0.5	2.8e-12	46.9	0.1	1.9	2	0	0	2	2	2	1	PAS	fold
PAS	PF00989.25	gi|257052846|ref|YP_003130679.1|	-	2.9e-05	24.0	0.0	6.5e-05	22.9	0.0	1.6	1	0	0	1	1	1	1	PAS	fold
PAS_9	PF13426.7	gi|257052846|ref|YP_003130679.1|	-	0.00024	21.3	0.0	0.0005	20.3	0.0	1.6	1	0	0	1	1	1	1	PAS	domain
ADH_zinc_N	PF00107.26	gi|257052846|ref|YP_003130679.1|	-	0.0048	16.9	0.3	0.02	14.9	0.2	2.0	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
PAS_7	PF12860.7	gi|257052846|ref|YP_003130679.1|	-	0.021	15.0	0.2	0.13	12.4	0.1	2.5	3	1	1	4	4	4	0	PAS	fold
PipA	PF07108.11	gi|257052846|ref|YP_003130679.1|	-	0.051	13.1	0.0	0.11	12.1	0.0	1.5	1	0	0	1	1	1	0	PipA	protein
GATase	PF00117.28	gi|257052847|ref|YP_003130680.1|	-	1.2e-21	77.4	0.0	1.5e-21	77.0	0.0	1.1	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
GATase_3	PF07685.14	gi|257052847|ref|YP_003130680.1|	-	4.8e-09	36.1	0.0	9.1e-09	35.2	0.0	1.4	1	1	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
SNO	PF01174.19	gi|257052847|ref|YP_003130680.1|	-	1e-06	28.8	0.0	0.021	14.6	0.0	2.1	2	0	0	2	2	2	2	SNO	glutamine	amidotransferase	family
Peptidase_C26	PF07722.13	gi|257052847|ref|YP_003130680.1|	-	0.00042	20.1	0.4	0.061	13.1	0.2	2.6	2	1	0	2	2	2	2	Peptidase	C26
DJ-1_PfpI	PF01965.24	gi|257052847|ref|YP_003130680.1|	-	0.0084	15.9	0.0	0.014	15.2	0.0	1.3	1	0	0	1	1	1	1	DJ-1/PfpI	family
Ribonuc_L-PSP	PF01042.21	gi|257052849|ref|YP_003130682.1|	-	2.1e-39	134.3	1.7	2.4e-39	134.1	1.7	1.0	1	0	0	1	1	1	1	Endoribonuclease	L-PSP
DUF3383	PF11863.8	gi|257052849|ref|YP_003130682.1|	-	0.038	13.0	0.1	0.038	13.0	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3383)
DUF350	PF03994.14	gi|257052850|ref|YP_003130683.1|	-	0.11	12.6	2.2	0.15	12.2	2.2	1.2	1	0	0	1	1	1	0	Domain	of	Unknown	Function	(DUF350)
Fer2	PF00111.27	gi|257052851|ref|YP_003130684.1|	-	2.5e-15	56.2	0.4	3.5e-15	55.7	0.4	1.2	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_4	PF13510.6	gi|257052851|ref|YP_003130684.1|	-	0.057	13.5	0.2	0.11	12.6	0.2	1.6	1	1	0	1	1	1	0	2Fe-2S	iron-sulfur	cluster	binding	domain
Arc_PepC_II	PF06847.11	gi|257052852|ref|YP_003130685.1|	-	1e-10	42.0	0.0	6.8e-09	36.1	0.0	2.3	2	0	0	2	2	2	1	Archaeal	Peptidase	A24	C-terminus	Type	II
Peptidase_A24	PF01478.18	gi|257052852|ref|YP_003130685.1|	-	6.1e-09	36.3	10.2	6.1e-09	36.3	10.2	1.9	2	0	0	2	2	2	1	Type	IV	leader	peptidase	family
PRA-CH	PF01502.18	gi|257052853|ref|YP_003130686.1|	-	3.3e-34	116.5	0.1	4.6e-34	116.1	0.1	1.2	1	0	0	1	1	1	1	Phosphoribosyl-AMP	cyclohydrolase
BNR_4	PF15892.5	gi|257052853|ref|YP_003130686.1|	-	0.011	15.1	0.0	0.013	14.9	0.0	1.1	1	0	0	1	1	1	0	BNR	repeat-containing	family	member
Phage_GP20	PF06810.11	gi|257052854|ref|YP_003130687.1|	-	0.016	15.1	0.9	1.7	8.4	0.2	3.4	3	1	0	3	3	3	0	Phage	minor	structural	protein	GP20
SNAP	PF14938.6	gi|257052854|ref|YP_003130687.1|	-	0.035	13.5	0.4	0.072	12.5	0.3	1.5	1	1	0	1	1	1	0	Soluble	NSF	attachment	protein,	SNAP
Flagellin_N	PF00669.20	gi|257052854|ref|YP_003130687.1|	-	0.053	13.6	0.1	0.29	11.3	0.0	2.2	2	1	1	3	3	3	0	Bacterial	flagellin	N-terminal	helical	region
DUF3510	PF12022.8	gi|257052854|ref|YP_003130687.1|	-	0.058	13.8	0.4	0.23	11.8	0.4	2.1	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF3510)
CENP-H	PF05837.12	gi|257052854|ref|YP_003130687.1|	-	0.43	11.0	8.7	6.2	7.3	0.2	3.3	3	0	0	3	3	3	0	Centromere	protein	H	(CENP-H)
CREPT	PF16566.5	gi|257052854|ref|YP_003130687.1|	-	0.88	9.7	8.4	1.8	8.7	0.1	4.3	2	1	1	4	4	4	0	Cell-cycle	alteration	and	expression-elevated	protein	in	tumour
CorA	PF01544.18	gi|257052854|ref|YP_003130687.1|	-	7.7	5.7	6.9	19	4.5	6.2	2.0	1	1	1	2	2	2	0	CorA-like	Mg2+	transporter	protein
bPH_2	PF03703.14	gi|257052855|ref|YP_003130688.1|	-	2.2e-19	69.4	0.1	3.9e-19	68.6	0.1	1.4	1	0	0	1	1	1	1	Bacterial	PH	domain
Pribosyltran	PF00156.27	gi|257052856|ref|YP_003130689.1|	-	3.3e-14	52.7	0.7	4.9e-14	52.2	0.7	1.2	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.6	gi|257052856|ref|YP_003130689.1|	-	0.00023	20.7	0.1	0.00031	20.2	0.1	1.2	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
PRTase_2	PF15609.6	gi|257052856|ref|YP_003130689.1|	-	0.08	12.4	0.2	0.13	11.8	0.2	1.4	1	0	0	1	1	1	0	Phosphoribosyl	transferase
Pribosyltran	PF00156.27	gi|257052857|ref|YP_003130690.1|	-	6.3e-12	45.3	0.3	9.7e-12	44.7	0.3	1.3	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
HTH_3	PF01381.22	gi|257052857|ref|YP_003130690.1|	-	2.8e-05	24.1	0.0	0.00017	21.6	0.0	2.3	3	0	0	3	3	3	1	Helix-turn-helix
HTH_31	PF13560.6	gi|257052857|ref|YP_003130690.1|	-	0.0044	17.3	0.9	0.011	16.1	0.2	2.1	2	0	0	2	2	2	1	Helix-turn-helix	domain
Xan_ur_permease	PF00860.20	gi|257052858|ref|YP_003130691.1|	-	1.3e-29	103.1	41.8	1.7e-29	102.7	41.8	1.1	1	0	0	1	1	1	1	Permease	family
DUF4491	PF14898.6	gi|257052858|ref|YP_003130691.1|	-	7.9	7.0	15.4	8.9	6.8	1.3	3.6	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4491)
GST_N_3	PF13417.6	gi|257052859|ref|YP_003130692.1|	-	6.7e-15	55.3	0.0	7.4e-15	55.1	0.0	1.0	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
Glutaredoxin	PF00462.24	gi|257052859|ref|YP_003130692.1|	-	2.2e-11	43.8	0.0	3.1e-11	43.3	0.0	1.3	1	0	0	1	1	1	1	Glutaredoxin
GST_N_2	PF13409.6	gi|257052859|ref|YP_003130692.1|	-	6.1e-08	32.9	0.0	7e-08	32.7	0.0	1.1	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
DUF836	PF05768.14	gi|257052859|ref|YP_003130692.1|	-	0.059	13.8	0.1	0.068	13.6	0.1	1.5	1	1	0	1	1	1	0	Glutaredoxin-like	domain	(DUF836)
Thioredoxin_2	PF13098.6	gi|257052859|ref|YP_003130692.1|	-	0.061	13.8	0.0	0.072	13.5	0.0	1.2	1	0	0	1	1	1	0	Thioredoxin-like	domain
UBZ_FAAP20	PF15750.5	gi|257052859|ref|YP_003130692.1|	-	0.13	12.2	0.1	0.21	11.6	0.1	1.4	1	0	0	1	1	1	0	Ubiquitin-binding	zinc-finger
Epimerase_2	PF02350.19	gi|257052860|ref|YP_003130693.1|	-	6e-26	91.1	0.0	1.5e-15	57.0	0.0	2.2	2	0	0	2	2	2	2	UDP-N-acetylglucosamine	2-epimerase
His_Phos_1	PF00300.22	gi|257052860|ref|YP_003130693.1|	-	0.09	12.5	0.1	0.19	11.4	0.1	1.5	1	0	0	1	1	1	0	Histidine	phosphatase	superfamily	(branch	1)
HTH_3	PF01381.22	gi|257052861|ref|YP_003130694.1|	-	1.5e-09	37.8	0.0	2.8e-09	36.9	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix
HTH_19	PF12844.7	gi|257052861|ref|YP_003130694.1|	-	5.3e-07	29.6	0.0	1.2e-06	28.4	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_31	PF13560.6	gi|257052861|ref|YP_003130694.1|	-	4.8e-06	26.8	1.5	7e-06	26.3	0.0	2.0	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|257052861|ref|YP_003130694.1|	-	0.00039	20.3	0.0	0.001	19.0	0.0	1.7	1	0	0	1	1	1	1	HTH	domain
HTH_25	PF13413.6	gi|257052861|ref|YP_003130694.1|	-	0.00083	19.2	0.0	0.0019	18.0	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
Sigma70_r4	PF04545.16	gi|257052861|ref|YP_003130694.1|	-	0.0078	15.7	0.0	0.018	14.6	0.0	1.6	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_8	PF02954.19	gi|257052861|ref|YP_003130694.1|	-	0.017	14.9	0.0	0.052	13.3	0.0	1.9	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	Fis	family
HTH_23	PF13384.6	gi|257052861|ref|YP_003130694.1|	-	0.037	13.8	0.7	0.078	12.8	0.0	1.8	2	0	0	2	2	1	0	Homeodomain-like	domain
HTH_32	PF13565.6	gi|257052861|ref|YP_003130694.1|	-	0.065	13.9	0.3	0.41	11.3	0.0	2.4	2	1	0	2	2	2	0	Homeodomain-like	domain
HTH_10	PF04967.12	gi|257052861|ref|YP_003130694.1|	-	0.078	12.8	0.0	0.17	11.7	0.0	1.4	1	0	0	1	1	1	0	HTH	DNA	binding	domain
HTH_36	PF13730.6	gi|257052861|ref|YP_003130694.1|	-	0.12	12.3	0.0	1.5	8.8	0.0	2.2	2	0	0	2	2	2	0	Helix-turn-helix	domain
MarR	PF01047.22	gi|257052861|ref|YP_003130694.1|	-	0.15	12.0	0.0	4.5	7.3	0.0	2.3	2	0	0	2	2	2	0	MarR	family
NUMOD1	PF07453.13	gi|257052861|ref|YP_003130694.1|	-	0.16	12.2	0.0	0.3	11.4	0.0	1.4	1	0	0	1	1	1	0	NUMOD1	domain
HTH_AraC	PF00165.23	gi|257052861|ref|YP_003130694.1|	-	0.21	11.7	0.0	0.41	10.8	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	proteins,	AraC	family
DUF1743	PF08489.11	gi|257052862|ref|YP_003130695.1|	-	4.8e-38	129.8	0.0	7.9e-38	129.1	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1743)
C1_1	PF00130.22	gi|257052862|ref|YP_003130695.1|	-	0.014	15.3	0.0	0.024	14.5	0.0	1.3	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
tRNA_anti-codon	PF01336.25	gi|257052862|ref|YP_003130695.1|	-	0.014	15.4	0.1	0.045	13.8	0.1	1.8	1	1	1	2	2	2	0	OB-fold	nucleic	acid	binding	domain
C1_2	PF03107.16	gi|257052862|ref|YP_003130695.1|	-	0.028	14.7	0.1	0.048	14.0	0.1	1.4	1	0	0	1	1	1	0	C1	domain
OrfB_Zn_ribbon	PF07282.11	gi|257052862|ref|YP_003130695.1|	-	0.029	14.3	1.0	0.076	12.9	1.0	1.7	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
DZR	PF12773.7	gi|257052862|ref|YP_003130695.1|	-	0.073	13.1	1.0	0.15	12.1	1.0	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
Zn-ribbon_8	PF09723.10	gi|257052862|ref|YP_003130695.1|	-	0.075	13.2	1.3	3.4	7.9	0.1	2.6	2	0	0	2	2	2	0	Zinc	ribbon	domain
zinc-ribbons_6	PF07191.12	gi|257052862|ref|YP_003130695.1|	-	0.12	12.4	0.6	0.2	11.7	0.6	1.3	1	0	0	1	1	1	0	zinc-ribbons
Zn_Tnp_IS1595	PF12760.7	gi|257052862|ref|YP_003130695.1|	-	0.13	12.2	2.6	0.27	11.3	2.6	1.5	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
zf-TFIIB	PF13453.6	gi|257052862|ref|YP_003130695.1|	-	0.77	9.1	4.2	0.56	9.6	1.8	2.0	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
Imm75	PF15660.6	gi|257052863|ref|YP_003130696.1|	-	0.051	13.9	0.2	0.11	12.8	0.2	1.5	1	0	0	1	1	1	0	Putative	Immunity	protein	75
FtsJ	PF01728.19	gi|257052864|ref|YP_003130697.1|	-	5.5e-54	183.0	0.0	6.6e-54	182.7	0.0	1.1	1	0	0	1	1	1	1	FtsJ-like	methyltransferase
TRAM	PF01938.20	gi|257052864|ref|YP_003130697.1|	-	8.1e-12	45.0	2.4	1.5e-11	44.1	2.4	1.4	1	0	0	1	1	1	1	TRAM	domain
Methyltransf_31	PF13847.6	gi|257052864|ref|YP_003130697.1|	-	0.0023	17.7	0.0	0.0069	16.2	0.0	1.7	2	0	0	2	2	2	1	Methyltransferase	domain
TrkA_N	PF02254.18	gi|257052864|ref|YP_003130697.1|	-	0.026	14.8	0.1	0.051	13.8	0.1	1.5	1	0	0	1	1	1	0	TrkA-N	domain
CDC48_N	PF02359.18	gi|257052864|ref|YP_003130697.1|	-	0.029	14.5	0.1	0.39	10.9	0.1	2.4	1	1	1	2	2	2	0	Cell	division	protein	48	(CDC48),	N-terminal	domain
Methyltransf_25	PF13649.6	gi|257052864|ref|YP_003130697.1|	-	0.06	14.1	0.2	0.16	12.7	0.2	1.9	1	1	0	1	1	1	0	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|257052864|ref|YP_003130697.1|	-	0.089	12.6	0.0	0.13	12.0	0.0	1.3	1	1	0	1	1	1	0	Methyltransferase	domain
MazE_antitoxin	PF04014.18	gi|257052864|ref|YP_003130697.1|	-	0.61	10.1	5.2	11	6.1	0.2	2.9	3	0	0	3	3	3	0	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
YbbR	PF07949.12	gi|257052864|ref|YP_003130697.1|	-	1.2	9.5	4.8	18	5.7	0.2	2.8	3	0	0	3	3	3	0	YbbR-like	protein
Metallophos_2	PF12850.7	gi|257052865|ref|YP_003130698.1|	-	1.6e-30	106.5	0.9	1.9e-30	106.2	0.9	1.1	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|257052865|ref|YP_003130698.1|	-	1.7e-11	45.0	3.4	3.3e-11	44.1	3.4	1.4	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_3	PF14582.6	gi|257052865|ref|YP_003130698.1|	-	0.031	13.6	0.1	0.11	11.7	0.0	1.8	2	0	0	2	2	2	0	Metallophosphoesterase,	calcineurin	superfamily
Amino_oxidase	PF01593.24	gi|257052866|ref|YP_003130699.1|	-	9e-33	114.2	0.1	1.1e-32	114.0	0.1	1.1	1	0	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.6	gi|257052866|ref|YP_003130699.1|	-	1.3e-11	44.6	0.0	3.1e-11	43.3	0.0	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|257052866|ref|YP_003130699.1|	-	2.9e-06	27.1	1.0	5.8e-05	22.8	1.0	2.1	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.14	gi|257052866|ref|YP_003130699.1|	-	8.2e-05	22.0	0.0	0.004	16.4	0.0	2.1	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.19	gi|257052866|ref|YP_003130699.1|	-	0.00024	20.5	0.2	0.00042	19.7	0.2	1.3	1	0	0	1	1	1	1	FAD	binding	domain
FMO-like	PF00743.19	gi|257052866|ref|YP_003130699.1|	-	0.0014	17.2	0.0	0.0018	16.8	0.0	1.1	1	0	0	1	1	1	1	Flavin-binding	monooxygenase-like
FAD_binding_2	PF00890.24	gi|257052866|ref|YP_003130699.1|	-	0.0053	15.9	0.2	0.011	14.9	0.2	1.4	1	0	0	1	1	1	1	FAD	binding	domain
Pyr_redox_3	PF13738.6	gi|257052866|ref|YP_003130699.1|	-	0.01	15.1	0.0	0.61	9.3	0.0	2.1	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.6	gi|257052866|ref|YP_003130699.1|	-	0.012	15.6	0.0	0.45	10.5	0.0	2.4	2	0	0	2	2	2	0	FAD-NAD(P)-binding
3HCDH_N	PF02737.18	gi|257052866|ref|YP_003130699.1|	-	0.013	15.4	0.0	0.019	14.8	0.0	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Thi4	PF01946.17	gi|257052866|ref|YP_003130699.1|	-	0.016	14.5	0.1	0.025	13.8	0.1	1.3	1	0	0	1	1	1	0	Thi4	family
Pyr_redox	PF00070.27	gi|257052866|ref|YP_003130699.1|	-	0.021	15.4	0.0	0.051	14.1	0.0	1.7	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|257052866|ref|YP_003130699.1|	-	0.035	12.8	0.1	0.095	11.4	0.1	1.6	2	0	0	2	2	2	0	HI0933-like	protein
NAD_Gly3P_dh_N	PF01210.23	gi|257052866|ref|YP_003130699.1|	-	0.21	11.5	0.0	0.95	9.4	0.0	1.9	2	0	0	2	2	2	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Kelch_6	PF13964.6	gi|257052867|ref|YP_003130700.1|	-	0.097	13.0	0.0	0.2	12.0	0.0	1.5	1	0	0	1	1	1	0	Kelch	motif
DUF3792	PF12670.7	gi|257052868|ref|YP_003130701.1|	-	0.036	14.2	9.7	0.082	13.1	3.4	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3792)
DUF5518	PF17647.1	gi|257052869|ref|YP_003130702.1|	-	1.2e-12	48.0	29.7	1.2e-12	48.0	29.7	2.8	2	1	0	2	2	2	1	Family	of	unknown	function	(DUF5518)
MGS	PF02142.22	gi|257052870|ref|YP_003130703.1|	-	3.4e-15	56.0	0.0	4e-15	55.8	0.0	1.1	1	0	0	1	1	1	1	MGS-like	domain
DUF3240	PF11582.8	gi|257052870|ref|YP_003130703.1|	-	0.1	12.7	0.0	0.15	12.2	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3240)
HalOD1	PF18545.1	gi|257052871|ref|YP_003130704.1|	-	1.2e-09	38.3	5.9	1.3e-09	38.1	5.9	1.1	1	0	0	1	1	1	1	Halobacterial	output	domain	1
HTH_10	PF04967.12	gi|257052872|ref|YP_003130705.1|	-	3.1e-14	52.5	0.0	7.3e-14	51.3	0.0	1.7	2	0	0	2	2	2	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|257052872|ref|YP_003130705.1|	-	1.2e-08	35.0	1.4	1.7e-08	34.5	1.4	1.2	1	0	0	1	1	1	1	GAF	and	HTH_10	associated	domain
Sigma70_r4	PF04545.16	gi|257052872|ref|YP_003130705.1|	-	0.00088	18.7	0.3	0.0027	17.2	0.1	1.9	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_AsnC-type	PF13404.6	gi|257052872|ref|YP_003130705.1|	-	0.046	13.5	0.2	0.11	12.4	0.2	1.6	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
UPF0122	PF04297.14	gi|257052872|ref|YP_003130705.1|	-	0.14	12.4	0.0	0.22	11.8	0.0	1.3	1	0	0	1	1	1	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
dUTPase	PF00692.19	gi|257052873|ref|YP_003130706.1|	-	1.6e-10	40.8	0.0	2.2e-10	40.3	0.0	1.2	1	0	0	1	1	1	1	dUTPase
HisKA_7TM	PF16927.5	gi|257052874|ref|YP_003130707.1|	-	3.8e-29	102.3	21.7	4.8e-29	102.0	21.7	1.1	1	0	0	1	1	1	1	N-terminal	7TM	region	of	histidine	kinase
HATPase_c	PF02518.26	gi|257052874|ref|YP_003130707.1|	-	1.5e-12	48.0	0.0	2.3e-12	47.4	0.0	1.3	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_4	PF08448.10	gi|257052874|ref|YP_003130707.1|	-	2.4e-09	37.4	0.2	7e-08	32.7	0.2	2.4	1	1	0	1	1	1	1	PAS	fold
PAS	PF00989.25	gi|257052874|ref|YP_003130707.1|	-	3e-09	36.9	0.1	1.2e-07	31.7	0.0	2.8	2	1	0	2	2	2	1	PAS	fold
PAS_9	PF13426.7	gi|257052874|ref|YP_003130707.1|	-	8.8e-08	32.3	0.0	6.3e-07	29.6	0.0	2.3	1	1	0	1	1	1	1	PAS	domain
PAS_8	PF13188.7	gi|257052874|ref|YP_003130707.1|	-	6.5e-05	22.8	0.0	0.00022	21.1	0.0	1.9	1	0	0	1	1	1	1	PAS	domain
HATPase_c_2	PF13581.6	gi|257052874|ref|YP_003130707.1|	-	0.00022	21.1	0.7	0.00046	20.2	0.1	1.8	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
PAS_7	PF12860.7	gi|257052874|ref|YP_003130707.1|	-	0.00028	21.0	0.0	0.4	10.9	0.0	2.8	1	1	0	1	1	1	1	PAS	fold
HATPase_c_3	PF13589.6	gi|257052874|ref|YP_003130707.1|	-	0.01	15.6	0.0	0.029	14.2	0.0	1.7	2	0	0	2	2	2	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_5	PF14501.6	gi|257052874|ref|YP_003130707.1|	-	0.057	13.3	0.0	0.1	12.5	0.0	1.4	1	0	0	1	1	1	0	GHKL	domain
dCache_3	PF14827.6	gi|257052874|ref|YP_003130707.1|	-	0.13	11.8	0.0	0.22	11.1	0.0	1.3	1	0	0	1	1	1	0	Double	sensory	domain	of	two-component	sensor	kinase
Aconitase	PF00330.20	gi|257052875|ref|YP_003130708.1|	-	1.4e-104	350.7	0.1	9.5e-103	344.7	0.1	2.4	1	1	0	1	1	1	1	Aconitase	family	(aconitate	hydratase)
Aconitase_C	PF00694.19	gi|257052875|ref|YP_003130708.1|	-	2.7e-20	73.0	0.0	5.4e-20	72.1	0.0	1.5	1	0	0	1	1	1	1	Aconitase	C-terminal	domain
DUF521	PF04412.13	gi|257052875|ref|YP_003130708.1|	-	0.016	13.9	0.0	0.024	13.3	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF521)
Pyr_redox_2	PF07992.14	gi|257052876|ref|YP_003130709.1|	-	3.7e-65	220.1	2.7	5.2e-65	219.6	2.7	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|257052876|ref|YP_003130709.1|	-	5.1e-37	126.5	0.2	1.8e-36	124.7	0.1	2.1	2	0	0	2	2	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox	PF00070.27	gi|257052876|ref|YP_003130709.1|	-	7e-22	77.8	2.8	6.3e-19	68.3	0.1	2.9	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Biotin_lipoyl	PF00364.22	gi|257052876|ref|YP_003130709.1|	-	7.7e-13	48.1	0.2	7.7e-13	48.1	0.2	2.1	2	0	0	2	2	2	1	Biotin-requiring	enzyme
Pyr_redox_3	PF13738.6	gi|257052876|ref|YP_003130709.1|	-	2e-12	47.0	0.0	4.9e-12	45.7	0.0	1.6	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|257052876|ref|YP_003130709.1|	-	1.9e-07	30.5	3.5	2.8e-05	23.4	3.7	2.7	2	1	0	2	2	2	1	Glucose	inhibited	division	protein	A
FAD_binding_3	PF01494.19	gi|257052876|ref|YP_003130709.1|	-	9.5e-07	28.4	7.3	0.0036	16.6	0.9	3.4	2	1	0	3	3	3	3	FAD	binding	domain
FAD_binding_2	PF00890.24	gi|257052876|ref|YP_003130709.1|	-	1.4e-06	27.7	4.4	4.3e-05	22.8	1.2	3.1	3	0	0	3	3	3	1	FAD	binding	domain
FAD_oxidored	PF12831.7	gi|257052876|ref|YP_003130709.1|	-	2.1e-06	27.4	1.2	3.8e-06	26.5	1.2	1.4	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|257052876|ref|YP_003130709.1|	-	3.1e-06	26.2	1.7	0.0007	18.4	0.6	3.2	3	0	0	3	3	3	1	HI0933-like	protein
NAD_binding_8	PF13450.6	gi|257052876|ref|YP_003130709.1|	-	6.8e-06	26.2	2.4	0.0018	18.5	0.8	2.6	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
AlaDh_PNT_C	PF01262.21	gi|257052876|ref|YP_003130709.1|	-	0.0001	21.7	5.0	0.029	13.7	0.9	2.9	3	0	0	3	3	3	2	Alanine	dehydrogenase/PNT,	C-terminal	domain
XdhC_C	PF13478.6	gi|257052876|ref|YP_003130709.1|	-	0.00043	20.8	0.2	0.059	13.9	0.0	2.7	2	0	0	2	2	2	1	XdhC	Rossmann	domain
UDPG_MGDP_dh_N	PF03721.14	gi|257052876|ref|YP_003130709.1|	-	0.00082	19.0	2.8	0.006	16.2	0.1	2.5	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
3HCDH_N	PF02737.18	gi|257052876|ref|YP_003130709.1|	-	0.0016	18.3	0.8	0.016	15.1	0.0	2.5	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Lycopene_cycl	PF05834.12	gi|257052876|ref|YP_003130709.1|	-	0.0036	16.4	2.4	0.16	11.0	1.7	2.6	2	1	0	2	2	2	1	Lycopene	cyclase	protein
Thi4	PF01946.17	gi|257052876|ref|YP_003130709.1|	-	0.021	14.1	0.7	0.084	12.1	0.3	2.1	2	0	0	2	2	2	0	Thi4	family
Trp_halogenase	PF04820.14	gi|257052876|ref|YP_003130709.1|	-	0.034	13.0	1.1	0.05	12.4	0.2	1.7	2	0	0	2	2	2	0	Tryptophan	halogenase
Biotin_lipoyl_2	PF13533.6	gi|257052876|ref|YP_003130709.1|	-	0.052	13.4	0.0	0.55	10.1	0.0	2.3	2	0	0	2	2	2	0	Biotin-lipoyl	like
2-Hacid_dh_C	PF02826.19	gi|257052876|ref|YP_003130709.1|	-	0.14	11.5	0.1	2.2	7.6	0.0	2.4	2	0	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_7	PF13241.6	gi|257052876|ref|YP_003130709.1|	-	0.21	12.0	2.3	15	6.1	0.1	3.3	3	1	0	3	3	3	0	Putative	NAD(P)-binding
NAD_binding_9	PF13454.6	gi|257052876|ref|YP_003130709.1|	-	1.1	9.2	4.8	9.4	6.2	0.3	3.2	3	0	0	3	3	3	0	FAD-NAD(P)-binding
CMD	PF02627.20	gi|257052877|ref|YP_003130710.1|	-	4e-18	65.2	1.0	5.1e-18	64.9	1.0	1.1	1	0	0	1	1	1	1	Carboxymuconolactone	decarboxylase	family
SLAC1	PF03595.17	gi|257052878|ref|YP_003130711.1|	-	1.5e-50	172.3	49.7	1.7e-50	172.1	49.7	1.0	1	0	0	1	1	1	1	Voltage-dependent	anion	channel
Cons_hypoth698	PF03601.14	gi|257052879|ref|YP_003130712.1|	-	3.1e-59	200.3	17.1	3.7e-59	200.1	17.1	1.0	1	0	0	1	1	1	1	Conserved	hypothetical	protein	698
AhpC-TSA	PF00578.21	gi|257052880|ref|YP_003130713.1|	-	8.5e-31	106.5	0.0	1.1e-30	106.1	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|257052880|ref|YP_003130713.1|	-	2.1e-15	56.7	0.0	2.9e-15	56.3	0.0	1.1	1	0	0	1	1	1	1	Redoxin
1-cysPrx_C	PF10417.9	gi|257052880|ref|YP_003130713.1|	-	2.6e-07	30.4	0.0	4.9e-07	29.5	0.0	1.5	1	0	0	1	1	1	1	C-terminal	domain	of	1-Cys	peroxiredoxin
Pyr_redox_2	PF07992.14	gi|257052884|ref|YP_003130717.1|	-	3.9e-45	154.3	1.6	4.7e-45	154.1	1.6	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|257052884|ref|YP_003130717.1|	-	1.2e-12	48.2	0.9	1.4e-08	35.1	0.1	3.1	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|257052884|ref|YP_003130717.1|	-	1.5e-07	30.9	0.2	1.2e-06	28.0	0.0	1.9	1	1	1	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Rubredoxin_C	PF18267.1	gi|257052884|ref|YP_003130717.1|	-	2.4e-05	24.2	0.0	0.00017	21.4	0.0	2.5	3	0	0	3	3	3	1	Rubredoxin	NAD+	reductase	C-terminal	domain
HI0933_like	PF03486.14	gi|257052884|ref|YP_003130717.1|	-	2.4e-05	23.2	0.0	0.045	12.4	0.0	3.1	3	1	0	3	3	3	2	HI0933-like	protein
DAO	PF01266.24	gi|257052884|ref|YP_003130717.1|	-	0.0051	16.4	6.7	0.53	9.8	0.0	3.5	2	1	0	3	3	3	1	FAD	dependent	oxidoreductase
Trp_halogenase	PF04820.14	gi|257052884|ref|YP_003130717.1|	-	0.029	13.2	0.8	0.22	10.3	0.0	2.1	2	0	0	2	2	2	0	Tryptophan	halogenase
NAD_binding_8	PF13450.6	gi|257052884|ref|YP_003130717.1|	-	0.041	14.1	0.5	6.1	7.2	0.0	2.6	2	0	0	2	2	2	0	NAD(P)-binding	Rossmann-like	domain
K_oxygenase	PF13434.6	gi|257052884|ref|YP_003130717.1|	-	0.072	12.2	0.0	0.43	9.7	0.0	1.9	1	1	1	2	2	2	0	L-lysine	6-monooxygenase	(NADPH-requiring)
NAD_binding_9	PF13454.6	gi|257052884|ref|YP_003130717.1|	-	0.077	13.0	1.5	7.4	6.5	0.0	3.1	3	0	0	3	3	3	0	FAD-NAD(P)-binding
GIDA	PF01134.22	gi|257052884|ref|YP_003130717.1|	-	2.6	7.0	4.1	49	2.8	0.0	3.6	3	1	1	4	4	4	0	Glucose	inhibited	division	protein	A
ATPase	PF06745.13	gi|257052885|ref|YP_003130718.1|	-	0.0013	18.1	0.0	0.0021	17.4	0.0	1.3	1	0	0	1	1	1	1	KaiC
AAA_30	PF13604.6	gi|257052885|ref|YP_003130718.1|	-	0.041	13.6	0.0	0.093	12.4	0.0	1.5	2	0	0	2	2	2	0	AAA	domain
HTH_5	PF01022.20	gi|257052886|ref|YP_003130719.1|	-	1.2e-15	57.1	0.2	2.1e-15	56.3	0.1	1.5	2	0	0	2	2	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|257052886|ref|YP_003130719.1|	-	3.7e-11	42.9	0.1	5.8e-11	42.3	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|257052886|ref|YP_003130719.1|	-	2.7e-10	39.6	0.1	3.9e-10	39.1	0.1	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.10	gi|257052886|ref|YP_003130719.1|	-	1.4e-08	34.4	0.1	2.1e-08	33.8	0.1	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|257052886|ref|YP_003130719.1|	-	6.5e-07	29.1	0.1	1.1e-06	28.4	0.1	1.4	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|257052886|ref|YP_003130719.1|	-	1.1e-06	28.4	0.0	1.6e-06	27.9	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_26	PF13443.6	gi|257052886|ref|YP_003130719.1|	-	0.00022	21.6	0.2	0.00065	20.1	0.0	1.9	2	0	0	2	2	2	1	Cro/C1-type	HTH	DNA-binding	domain
RepL	PF05732.11	gi|257052886|ref|YP_003130719.1|	-	0.00028	20.3	0.0	0.0005	19.5	0.0	1.4	1	1	0	1	1	1	1	Firmicute	plasmid	replication	protein	(RepL)
HTH_43	PF09904.9	gi|257052886|ref|YP_003130719.1|	-	0.00052	19.9	0.0	0.00066	19.6	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_11	PF08279.12	gi|257052886|ref|YP_003130719.1|	-	0.00057	19.8	0.1	0.00085	19.2	0.1	1.3	1	0	0	1	1	1	1	HTH	domain
MarR	PF01047.22	gi|257052886|ref|YP_003130719.1|	-	0.0007	19.5	0.3	0.0017	18.2	0.1	1.7	2	0	0	2	2	2	1	MarR	family
HTH_AsnC-type	PF13404.6	gi|257052886|ref|YP_003130719.1|	-	0.00082	19.2	0.1	0.0016	18.3	0.1	1.5	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
Rrf2	PF02082.20	gi|257052886|ref|YP_003130719.1|	-	0.0015	18.9	0.0	0.002	18.5	0.0	1.2	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_34	PF13601.6	gi|257052886|ref|YP_003130719.1|	-	0.0015	18.7	0.0	0.0022	18.1	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_Crp_2	PF13545.6	gi|257052886|ref|YP_003130719.1|	-	0.0021	18.0	0.1	0.0038	17.2	0.1	1.6	1	1	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_28	PF13518.6	gi|257052886|ref|YP_003130719.1|	-	0.0025	17.9	0.0	0.0042	17.2	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
PaaX	PF07848.12	gi|257052886|ref|YP_003130719.1|	-	0.0031	17.7	0.0	0.0046	17.1	0.0	1.3	1	0	0	1	1	1	1	PaaX-like	protein
Arg_repressor	PF01316.21	gi|257052886|ref|YP_003130719.1|	-	0.0048	16.6	0.1	0.0079	15.9	0.1	1.4	1	0	0	1	1	1	1	Arginine	repressor,	DNA	binding	domain
DUF4423	PF14394.6	gi|257052886|ref|YP_003130719.1|	-	0.0066	16.2	0.0	0.0071	16.1	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4423)
RP-C	PF03428.13	gi|257052886|ref|YP_003130719.1|	-	0.0067	16.1	0.0	0.013	15.2	0.0	1.5	1	1	0	1	1	1	1	Replication	protein	C	N-terminal	domain
HTH_23	PF13384.6	gi|257052886|ref|YP_003130719.1|	-	0.0074	16.1	0.0	0.012	15.4	0.0	1.3	1	0	0	1	1	1	1	Homeodomain-like	domain
Penicillinase_R	PF03965.16	gi|257052886|ref|YP_003130719.1|	-	0.0083	16.5	0.1	0.01	16.2	0.1	1.2	1	0	0	1	1	1	1	Penicillinase	repressor
Mga	PF05043.13	gi|257052886|ref|YP_003130719.1|	-	0.011	16.3	0.0	0.015	15.9	0.0	1.3	1	0	0	1	1	1	0	Mga	helix-turn-helix	domain
HTH_DeoR	PF08220.12	gi|257052886|ref|YP_003130719.1|	-	0.015	15.0	0.2	0.027	14.2	0.2	1.4	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
HTH_27	PF13463.6	gi|257052886|ref|YP_003130719.1|	-	0.023	15.2	0.1	0.037	14.5	0.1	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Sulfolobus_pRN	PF05584.11	gi|257052886|ref|YP_003130719.1|	-	0.047	13.7	0.0	0.069	13.2	0.0	1.3	1	0	0	1	1	1	0	Sulfolobus	plasmid	regulatory	protein
HTH_9	PF08221.11	gi|257052886|ref|YP_003130719.1|	-	0.052	13.6	0.1	0.094	12.8	0.1	1.4	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
TFIIE_alpha	PF02002.17	gi|257052886|ref|YP_003130719.1|	-	0.056	13.3	0.2	0.085	12.7	0.2	1.4	1	1	0	1	1	1	0	TFIIE	alpha	subunit
HTH_3	PF01381.22	gi|257052886|ref|YP_003130719.1|	-	0.065	13.3	0.0	0.12	12.5	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix
MerR_1	PF13411.6	gi|257052886|ref|YP_003130719.1|	-	0.067	13.3	0.0	0.11	12.6	0.0	1.4	1	0	0	1	1	1	0	MerR	HTH	family	regulatory	protein
FUR	PF01475.19	gi|257052886|ref|YP_003130719.1|	-	0.067	13.3	0.0	0.12	12.5	0.0	1.5	1	1	0	1	1	1	0	Ferric	uptake	regulator	family
DUF3489	PF11994.8	gi|257052886|ref|YP_003130719.1|	-	0.098	12.7	0.1	0.16	12.0	0.1	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3489)
S10_plectin	PF03501.15	gi|257052886|ref|YP_003130719.1|	-	0.15	12.2	0.0	0.2	11.7	0.0	1.2	1	0	0	1	1	1	0	Plectin/S10	domain
TrmB	PF01978.19	gi|257052887|ref|YP_003130720.1|	-	7.9e-10	38.5	0.1	1.1e-09	38.0	0.1	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.7	gi|257052887|ref|YP_003130720.1|	-	9.3e-09	35.2	1.0	1.7e-08	34.4	1.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|257052887|ref|YP_003130720.1|	-	4e-07	29.7	1.5	1e-06	28.4	1.0	1.9	1	1	1	2	2	2	1	IclR	helix-turn-helix	domain
HTH_11	PF08279.12	gi|257052887|ref|YP_003130720.1|	-	1.1e-05	25.2	0.2	3.8e-05	23.5	0.0	2.0	2	1	1	3	3	3	1	HTH	domain
FUR	PF01475.19	gi|257052887|ref|YP_003130720.1|	-	0.0013	18.9	0.1	0.0023	18.1	0.1	1.6	1	1	0	1	1	1	1	Ferric	uptake	regulator	family
HTH_23	PF13384.6	gi|257052887|ref|YP_003130720.1|	-	0.0035	17.1	0.0	0.011	15.5	0.1	1.8	2	0	0	2	2	2	1	Homeodomain-like	domain
MarR_2	PF12802.7	gi|257052887|ref|YP_003130720.1|	-	0.0093	15.8	0.2	0.015	15.2	0.2	1.4	1	0	0	1	1	1	1	MarR	family
HTH_29	PF13551.6	gi|257052887|ref|YP_003130720.1|	-	0.013	15.5	0.2	0.091	12.8	0.1	2.5	3	1	1	4	4	4	0	Winged	helix-turn	helix
HTH_7	PF02796.15	gi|257052887|ref|YP_003130720.1|	-	0.031	14.4	0.0	0.2	11.7	0.0	2.1	1	1	1	2	2	2	0	Helix-turn-helix	domain	of	resolvase
HTH_22	PF13309.6	gi|257052887|ref|YP_003130720.1|	-	0.032	14.3	0.2	2.2	8.4	0.1	2.7	2	0	0	2	2	2	0	HTH	domain
Cas_Cas02710	PF09670.10	gi|257052887|ref|YP_003130720.1|	-	0.055	12.3	0.8	0.056	12.2	0.8	1.1	1	0	0	1	1	1	0	CRISPR-associated	protein	(Cas_Cas02710)
DUF892	PF05974.12	gi|257052887|ref|YP_003130720.1|	-	0.28	11.2	6.1	0.41	10.6	5.0	1.9	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF892)
Lactamase_B	PF00753.27	gi|257052888|ref|YP_003130721.1|	-	2.8e-06	27.5	5.4	5e-06	26.7	5.3	1.5	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|257052888|ref|YP_003130721.1|	-	7.8e-06	25.5	0.0	1.2e-05	24.9	0.0	1.4	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Nitro_FeMo-Co	PF02579.17	gi|257052889|ref|YP_003130722.1|	-	9.6e-22	77.1	0.1	9.6e-22	77.1	0.1	1.5	2	0	0	2	2	2	1	Dinitrogenase	iron-molybdenum	cofactor
GRP	PF07172.11	gi|257052889|ref|YP_003130722.1|	-	4.3	8.1	15.8	1.6	9.5	13.3	1.5	2	0	0	2	2	2	0	Glycine	rich	protein	family
TrmO	PF01980.16	gi|257052890|ref|YP_003130723.1|	-	1.1e-30	106.3	0.0	1.3e-30	106.0	0.0	1.1	1	0	0	1	1	1	1	tRNA-methyltransferase	O
ABC_tran	PF00005.27	gi|257052891|ref|YP_003130724.1|	-	1.7e-32	112.8	0.0	2.3e-32	112.4	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|257052891|ref|YP_003130724.1|	-	1e-09	38.7	0.9	4.4e-05	23.5	0.2	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|257052891|ref|YP_003130724.1|	-	0.00028	20.6	0.1	0.00055	19.6	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|257052891|ref|YP_003130724.1|	-	0.00042	20.9	0.0	0.00063	20.3	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|257052891|ref|YP_003130724.1|	-	0.0006	20.2	0.1	0.0013	19.2	0.1	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
SMC_N	PF02463.19	gi|257052891|ref|YP_003130724.1|	-	0.0028	17.1	0.3	0.083	12.3	0.3	2.2	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
Zeta_toxin	PF06414.12	gi|257052891|ref|YP_003130724.1|	-	0.01	15.2	0.0	0.017	14.4	0.0	1.3	1	0	0	1	1	1	1	Zeta	toxin
Mg_chelatase	PF01078.21	gi|257052891|ref|YP_003130724.1|	-	0.011	15.1	0.0	0.023	14.1	0.0	1.5	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_30	PF13604.6	gi|257052891|ref|YP_003130724.1|	-	0.053	13.2	0.0	0.11	12.2	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_15	PF13175.6	gi|257052891|ref|YP_003130724.1|	-	0.064	13.0	0.0	0.079	12.7	0.0	1.1	1	0	0	1	1	1	0	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|257052891|ref|YP_003130724.1|	-	0.15	12.0	0.0	0.24	11.3	0.0	1.3	1	0	0	1	1	1	0	RsgA	GTPase
Rad17	PF03215.15	gi|257052891|ref|YP_003130724.1|	-	0.18	11.7	0.0	0.42	10.5	0.0	1.5	2	0	0	2	2	2	0	Rad17	P-loop	domain
AAA_PrkA	PF08298.11	gi|257052891|ref|YP_003130724.1|	-	0.2	10.5	0.0	0.3	9.9	0.0	1.2	1	0	0	1	1	1	0	PrkA	AAA	domain
FecCD	PF01032.18	gi|257052892|ref|YP_003130725.1|	-	1.7e-90	303.2	35.9	2e-90	302.9	35.9	1.0	1	0	0	1	1	1	1	FecCD	transport	family
RhodobacterPufX	PF11511.8	gi|257052892|ref|YP_003130725.1|	-	0.096	12.3	3.7	0.25	11.0	0.2	2.8	2	0	0	2	2	2	0	Intrinsic	membrane	protein	PufX
Peripla_BP_2	PF01497.18	gi|257052893|ref|YP_003130726.1|	-	3.3e-21	75.9	0.3	4.2e-21	75.6	0.3	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
Pilin_N	PF07790.11	gi|257052894|ref|YP_003130727.1|	-	1.1e-08	35.9	0.1	3e-08	34.4	0.1	1.8	1	0	0	1	1	1	1	Archaeal	Type	IV	pilin,	N-terminal
DUF4082	PF13313.6	gi|257052894|ref|YP_003130727.1|	-	0.0012	18.9	3.4	0.061	13.4	0.4	2.9	2	1	1	3	3	3	2	Domain	of	unknown	function	(DUF4082)
tRNA-synt_1	PF00133.22	gi|257052895|ref|YP_003130728.1|	-	1.8e-176	588.0	4.0	3.3e-176	587.1	4.0	1.4	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.13	gi|257052895|ref|YP_003130728.1|	-	1.4e-28	99.8	0.0	2.9e-28	98.8	0.0	1.6	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1g	PF09334.11	gi|257052895|ref|YP_003130728.1|	-	3.4e-26	91.9	0.3	1.5e-09	37.1	0.0	3.9	3	1	0	3	3	3	3	tRNA	synthetases	class	I	(M)
tRNA-synt_1_2	PF13603.6	gi|257052895|ref|YP_003130728.1|	-	8.3e-05	22.2	0.0	0.00019	21.0	0.0	1.5	1	0	0	1	1	1	1	Leucyl-tRNA	synthetase,	Domain	2
Aldo_ket_red	PF00248.21	gi|257052896|ref|YP_003130729.1|	-	3.9e-57	193.7	0.0	4.4e-57	193.5	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
CoA_binding	PF02629.19	gi|257052896|ref|YP_003130729.1|	-	0.2	12.4	0.6	18	6.1	0.1	2.6	3	0	0	3	3	3	0	CoA	binding	domain
DHNA	PF04038.12	gi|257052897|ref|YP_003130730.1|	-	9.7e-35	119.4	0.0	1.1e-34	119.2	0.0	1.0	1	0	0	1	1	1	1	Dihydroneopterin	aldolase
GAF_3	PF13492.6	gi|257052899|ref|YP_003130732.1|	-	0.017	15.5	0.3	4.5	7.6	0.0	3.1	3	0	0	3	3	3	0	GAF	domain
DUF5082	PF16888.5	gi|257052900|ref|YP_003130733.1|	-	0.0052	17.1	0.0	0.016	15.5	0.0	1.7	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF5082)
Phe_tRNA-synt_N	PF02912.18	gi|257052900|ref|YP_003130733.1|	-	0.028	14.4	0.0	0.13	12.2	0.0	2.0	2	0	0	2	2	2	0	Aminoacyl	tRNA	synthetase	class	II,	N-terminal	domain
TPR_MLP1_2	PF07926.12	gi|257052900|ref|YP_003130733.1|	-	0.032	14.3	0.5	0.24	11.5	0.1	2.2	1	1	1	2	2	2	0	TPR/MLP1/MLP2-like	protein
tRNA-synt_1f	PF01921.18	gi|257052900|ref|YP_003130733.1|	-	0.087	11.7	0.0	0.1	11.5	0.0	1.1	1	0	0	1	1	1	0	tRNA	synthetases	class	I	(K)
Creatininase	PF02633.14	gi|257052901|ref|YP_003130734.1|	-	1.6e-71	240.6	2.7	1.8e-71	240.4	2.7	1.0	1	0	0	1	1	1	1	Creatinine	amidohydrolase
DUF192	PF02643.15	gi|257052902|ref|YP_003130735.1|	-	1.3e-29	102.1	0.0	1.6e-29	101.9	0.0	1.1	1	0	0	1	1	1	1	Uncharacterized	ACR,	COG1430
DUF373	PF04123.13	gi|257052903|ref|YP_003130736.1|	-	4.2e-117	391.4	8.7	4.8e-117	391.2	8.7	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF373)
DUF2583	PF10762.9	gi|257052903|ref|YP_003130736.1|	-	0.069	13.6	0.7	0.069	13.6	0.7	3.0	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF2583)
Peptidase_M29	PF02073.15	gi|257052904|ref|YP_003130737.1|	-	8.2e-64	215.9	0.1	9.5e-64	215.6	0.1	1.0	1	0	0	1	1	1	1	Thermophilic	metalloprotease	(M29)
SPW	PF03779.14	gi|257052905|ref|YP_003130738.1|	-	0.011	15.2	0.1	0.017	14.7	0.1	1.3	1	0	0	1	1	1	0	SPW	repeat
DUF5305	PF17231.2	gi|257052905|ref|YP_003130738.1|	-	0.19	11.1	0.1	0.19	11.1	0.1	1.0	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5305)
DUF4083	PF13314.6	gi|257052905|ref|YP_003130738.1|	-	0.22	11.5	4.9	0.3	11.1	4.9	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4083)
Syndecan	PF01034.20	gi|257052905|ref|YP_003130738.1|	-	1.8	8.5	4.3	2.1	8.3	4.3	1.2	1	0	0	1	1	1	0	Syndecan	domain
Metallophos_2	PF12850.7	gi|257052906|ref|YP_003130739.1|	-	1.9e-27	96.5	0.2	2.2e-27	96.3	0.2	1.0	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|257052906|ref|YP_003130739.1|	-	0.00011	22.7	1.9	0.3	11.6	0.0	2.7	1	1	1	2	2	2	2	Calcineurin-like	phosphoesterase
Lactamase_B	PF00753.27	gi|257052906|ref|YP_003130739.1|	-	0.00056	20.0	1.2	0.0011	19.0	1.2	1.6	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Usp	PF00582.26	gi|257052906|ref|YP_003130739.1|	-	0.0067	16.9	0.7	0.017	15.7	0.4	1.9	1	1	1	2	2	2	1	Universal	stress	protein	family
NIF3	PF01784.18	gi|257052906|ref|YP_003130739.1|	-	0.037	13.6	0.1	0.52	9.9	0.1	2.0	2	0	0	2	2	2	0	NIF3	(NGG1p	interacting	factor	3)
ABC2_membrane_2	PF12679.7	gi|257052907|ref|YP_003130740.1|	-	4.4e-14	52.4	8.7	6.1e-14	52.0	8.7	1.2	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_5	PF13346.6	gi|257052907|ref|YP_003130740.1|	-	1.6e-05	24.5	0.3	1.6e-05	24.5	0.3	1.7	2	0	0	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.7	gi|257052907|ref|YP_003130740.1|	-	0.0008	18.6	3.8	0.0008	18.6	3.8	1.7	1	1	0	2	2	2	1	ABC-2	family	transporter	protein
PSI_PSAK	PF01241.18	gi|257052907|ref|YP_003130740.1|	-	0.016	15.2	1.2	0.032	14.3	0.3	2.0	2	0	0	2	2	2	0	Photosystem	I	psaG	/	psaK
TMEM18	PF14770.6	gi|257052907|ref|YP_003130740.1|	-	0.29	11.1	0.0	0.29	11.1	0.0	1.9	2	0	0	2	2	2	0	Transmembrane	protein	18
DUF2178	PF09946.9	gi|257052907|ref|YP_003130740.1|	-	1.9	8.7	5.9	0.23	11.6	0.3	2.4	3	1	0	3	3	3	0	Predicted	membrane	protein	(DUF2178)
DUF4131	PF13567.6	gi|257052907|ref|YP_003130740.1|	-	3.2	7.4	8.4	3	7.5	0.0	3.0	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4131)
ABC2_membrane_2	PF12679.7	gi|257052908|ref|YP_003130741.1|	-	3.6e-11	42.9	14.0	4.9e-11	42.4	14.0	1.3	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.7	gi|257052908|ref|YP_003130741.1|	-	0.002	17.3	6.3	0.0026	16.9	6.3	1.2	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_5	PF13346.6	gi|257052908|ref|YP_003130741.1|	-	0.0025	17.4	1.3	0.004	16.7	1.3	1.6	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.24	gi|257052908|ref|YP_003130741.1|	-	0.024	14.1	5.0	0.039	13.4	5.0	1.4	1	0	0	1	1	1	0	ABC-2	type	transporter
ABC2_membrane_4	PF12730.7	gi|257052908|ref|YP_003130741.1|	-	0.56	10.1	5.3	0.72	9.8	4.4	1.7	1	1	1	2	2	2	0	ABC-2	family	transporter	protein
ABC_tran	PF00005.27	gi|257052909|ref|YP_003130742.1|	-	2.1e-25	89.8	0.0	3.1e-25	89.3	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|257052909|ref|YP_003130742.1|	-	1.8e-15	57.5	1.1	4.9e-11	43.0	0.0	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|257052909|ref|YP_003130742.1|	-	0.0076	15.7	0.1	0.54	9.6	0.0	2.2	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|257052909|ref|YP_003130742.1|	-	0.0082	16.7	0.0	0.016	15.7	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|257052909|ref|YP_003130742.1|	-	0.036	13.8	0.0	0.067	12.9	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
SRP54	PF00448.22	gi|257052909|ref|YP_003130742.1|	-	0.072	12.7	0.2	0.13	11.8	0.2	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_22	PF13401.6	gi|257052909|ref|YP_003130742.1|	-	0.13	12.5	0.5	1.1	9.5	0.3	2.2	1	1	1	2	2	2	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|257052909|ref|YP_003130742.1|	-	0.14	12.1	0.0	0.25	11.2	0.0	1.3	1	0	0	1	1	1	0	RsgA	GTPase
MetallophosC	PF16370.5	gi|257052909|ref|YP_003130742.1|	-	0.17	12.2	0.0	0.31	11.3	0.0	1.4	1	0	0	1	1	1	0	C	terminal	of	Calcineurin-like	phosphoesterase
AAA_33	PF13671.6	gi|257052909|ref|YP_003130742.1|	-	0.17	12.1	0.1	0.24	11.6	0.1	1.5	1	1	0	1	1	1	0	AAA	domain
DUF562	PF04763.12	gi|257052910|ref|YP_003130743.1|	-	0.18	11.3	0.1	0.36	10.3	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF562)
ACR_tran	PF00873.19	gi|257052914|ref|YP_003130747.1|	-	0.066	10.9	0.5	0.086	10.5	0.3	1.3	1	1	0	1	1	1	0	AcrB/AcrD/AcrF	family
CPP1-like	PF11833.8	gi|257052914|ref|YP_003130747.1|	-	0.078	12.6	7.3	0.092	12.4	7.3	1.1	1	0	0	1	1	1	0	Protein	CHAPERONE-LIKE	PROTEIN	OF	POR1-like
CnrY	PF17524.2	gi|257052914|ref|YP_003130747.1|	-	0.29	11.4	1.3	14	6.0	0.4	2.4	1	1	1	2	2	2	0	Anti-sigma	factor	CnrY
SHR3_chaperone	PF08229.11	gi|257052915|ref|YP_003130748.1|	-	0.18	10.7	0.4	0.26	10.2	0.4	1.1	1	0	0	1	1	1	0	ER	membrane	protein	SH3
DUF4307	PF14155.6	gi|257052915|ref|YP_003130748.1|	-	0.36	10.7	5.6	0.2	11.5	2.7	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4307)
ABC_tran	PF00005.27	gi|257052916|ref|YP_003130749.1|	-	3.1e-34	118.4	0.0	4.7e-34	117.9	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|257052916|ref|YP_003130749.1|	-	1.7e-17	63.7	0.0	3.7e-17	62.6	0.0	1.6	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_22	PF13401.6	gi|257052916|ref|YP_003130749.1|	-	0.001	19.4	0.0	0.0027	18.0	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
PRK	PF00485.18	gi|257052916|ref|YP_003130749.1|	-	0.0014	18.4	0.0	0.0023	17.7	0.0	1.3	1	0	0	1	1	1	1	Phosphoribulokinase	/	Uridine	kinase	family
AAA	PF00004.29	gi|257052916|ref|YP_003130749.1|	-	0.0043	17.5	0.0	0.0082	16.6	0.0	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_18	PF13238.6	gi|257052916|ref|YP_003130749.1|	-	0.0058	17.2	0.1	0.016	15.8	0.0	1.8	2	0	0	2	2	1	1	AAA	domain
NB-ARC	PF00931.22	gi|257052916|ref|YP_003130749.1|	-	0.014	14.6	0.1	0.059	12.5	0.0	1.8	2	0	0	2	2	2	0	NB-ARC	domain
Rad17	PF03215.15	gi|257052916|ref|YP_003130749.1|	-	0.015	15.2	0.0	0.023	14.6	0.0	1.3	1	0	0	1	1	1	0	Rad17	P-loop	domain
AAA_16	PF13191.6	gi|257052916|ref|YP_003130749.1|	-	0.027	14.8	0.1	0.078	13.4	0.0	1.9	2	0	0	2	2	2	0	AAA	ATPase	domain
MobB	PF03205.14	gi|257052916|ref|YP_003130749.1|	-	0.039	13.9	0.1	0.066	13.1	0.1	1.3	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_21	PF13304.6	gi|257052916|ref|YP_003130749.1|	-	0.06	13.1	0.3	1.1	9.0	0.1	2.1	1	1	0	2	2	2	0	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
ATPase	PF06745.13	gi|257052916|ref|YP_003130749.1|	-	0.071	12.5	0.3	0.66	9.3	0.1	2.1	2	0	0	2	2	2	0	KaiC
Mg_chelatase	PF01078.21	gi|257052916|ref|YP_003130749.1|	-	0.089	12.2	0.0	0.15	11.4	0.0	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_13	PF13166.6	gi|257052916|ref|YP_003130749.1|	-	0.13	10.9	0.0	0.71	8.5	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
ATP-synt_ab	PF00006.25	gi|257052916|ref|YP_003130749.1|	-	0.15	11.7	0.0	0.24	11.0	0.0	1.2	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
AAA_29	PF13555.6	gi|257052916|ref|YP_003130749.1|	-	0.21	11.4	0.0	0.4	10.5	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
ABC_tran	PF00005.27	gi|257052917|ref|YP_003130750.1|	-	8e-25	88.0	0.0	1.6e-24	87.0	0.0	1.5	1	1	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|257052917|ref|YP_003130750.1|	-	3e-16	59.7	0.0	5.7e-16	58.8	0.0	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|257052917|ref|YP_003130750.1|	-	3.3e-06	27.1	0.1	0.0045	16.9	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|257052917|ref|YP_003130750.1|	-	0.0013	18.2	0.2	0.16	11.4	0.1	2.2	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|257052917|ref|YP_003130750.1|	-	0.0026	18.0	0.7	0.078	13.3	0.0	2.5	3	0	0	3	3	3	1	AAA	domain
AAA_16	PF13191.6	gi|257052917|ref|YP_003130750.1|	-	0.0048	17.3	0.1	0.015	15.6	0.0	1.8	2	0	0	2	2	2	1	AAA	ATPase	domain
MobB	PF03205.14	gi|257052917|ref|YP_003130750.1|	-	0.014	15.3	0.1	0.027	14.4	0.1	1.4	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_5	PF07728.14	gi|257052917|ref|YP_003130750.1|	-	0.02	14.9	0.2	0.081	12.9	0.1	2.0	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
ATP-synt_ab	PF00006.25	gi|257052917|ref|YP_003130750.1|	-	0.023	14.4	0.0	0.035	13.8	0.0	1.5	1	1	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
NACHT	PF05729.12	gi|257052917|ref|YP_003130750.1|	-	0.036	14.0	0.1	0.066	13.1	0.1	1.4	1	0	0	1	1	1	0	NACHT	domain
AAA	PF00004.29	gi|257052917|ref|YP_003130750.1|	-	0.039	14.4	0.0	0.12	12.8	0.0	1.9	2	0	0	2	2	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
NB-ARC	PF00931.22	gi|257052917|ref|YP_003130750.1|	-	0.072	12.3	0.0	0.14	11.4	0.0	1.6	2	0	0	2	2	2	0	NB-ARC	domain
NTPase_1	PF03266.15	gi|257052917|ref|YP_003130750.1|	-	0.1	12.5	0.1	0.23	11.3	0.1	1.6	1	0	0	1	1	1	0	NTPase
TsaE	PF02367.17	gi|257052917|ref|YP_003130750.1|	-	0.11	12.6	0.0	0.19	11.7	0.0	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_7	PF12775.7	gi|257052917|ref|YP_003130750.1|	-	0.14	11.6	0.0	0.23	10.9	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
RsgA_GTPase	PF03193.16	gi|257052917|ref|YP_003130750.1|	-	0.15	12.0	0.0	0.31	10.9	0.0	1.5	1	0	0	1	1	1	0	RsgA	GTPase
AAA_29	PF13555.6	gi|257052917|ref|YP_003130750.1|	-	0.2	11.5	0.0	0.39	10.5	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_25	PF13481.6	gi|257052917|ref|YP_003130750.1|	-	0.31	10.6	2.1	16	5.0	0.0	2.7	3	1	0	3	3	3	0	AAA	domain
Halo_GVPC	PF05465.13	gi|257052917|ref|YP_003130750.1|	-	6.8	7.1	7.7	0.89	9.9	0.4	3.1	4	0	0	4	4	3	0	Halobacterial	gas	vesicle	protein	C	(GVPC)	repeat
BPD_transp_1	PF00528.22	gi|257052918|ref|YP_003130751.1|	-	2.1e-23	83.0	9.2	2.1e-23	83.0	9.2	1.7	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|257052918|ref|YP_003130751.1|	-	6.2e-06	26.1	0.0	6.2e-06	26.1	0.0	2.6	3	0	0	3	3	3	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
BPD_transp_1	PF00528.22	gi|257052919|ref|YP_003130752.1|	-	6.9e-36	123.7	15.6	6.9e-36	123.7	15.6	1.8	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
Trep_Strep	PF09605.10	gi|257052919|ref|YP_003130752.1|	-	0.12	12.4	0.2	0.12	12.4	0.2	3.6	3	1	0	3	3	3	0	Hypothetical	bacterial	integral	membrane	protein	(Trep_Strep)
SBP_bac_5	PF00496.22	gi|257052920|ref|YP_003130753.1|	-	7e-33	114.1	2.0	3.9e-27	95.2	2.3	2.2	1	1	0	2	2	2	2	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
TAT_signal	PF10518.9	gi|257052920|ref|YP_003130753.1|	-	0.00059	19.6	0.6	0.0011	18.7	0.6	1.5	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
UCR_Fe-S_N	PF10399.9	gi|257052920|ref|YP_003130753.1|	-	0.052	12.9	0.5	0.11	11.9	0.5	1.5	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
Pro_isomerase	PF00160.21	gi|257052922|ref|YP_003130755.1|	-	1.5e-47	161.8	0.0	1.7e-47	161.6	0.0	1.0	1	0	0	1	1	1	1	Cyclophilin	type	peptidyl-prolyl	cis-trans	isomerase/CLD
DUF5134	PF17197.4	gi|257052923|ref|YP_003130756.1|	-	0.016	15.1	0.8	0.045	13.7	0.3	1.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF5134)
ADH_N	PF08240.12	gi|257052924|ref|YP_003130757.1|	-	9.9e-27	93.0	0.7	9.9e-27	93.0	0.7	1.9	2	0	0	2	2	2	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|257052924|ref|YP_003130757.1|	-	3.1e-24	85.4	0.7	5.2e-24	84.7	0.7	1.3	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
Glu_dehyd_C	PF16912.5	gi|257052924|ref|YP_003130757.1|	-	1.7e-05	24.4	0.8	2.8e-05	23.7	0.8	1.4	1	1	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
ADH_N_assoc	PF13823.6	gi|257052924|ref|YP_003130757.1|	-	0.0024	17.8	0.0	0.011	15.6	0.0	2.1	2	0	0	2	2	2	1	Alcohol	dehydrogenase	GroES-associated
AlaDh_PNT_C	PF01262.21	gi|257052924|ref|YP_003130757.1|	-	0.041	13.2	1.9	0.062	12.6	1.9	1.2	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Phage_holin_2_4	PF16082.5	gi|257052926|ref|YP_003130759.1|	-	0.076	12.8	2.0	0.13	12.0	1.8	1.6	1	1	0	1	1	1	0	Bacteriophage	holin	family,	superfamily	II-like
zf-ribbon_3	PF13248.6	gi|257052927|ref|YP_003130760.1|	-	0.0069	15.8	0.1	0.013	14.9	0.1	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
zf-C2HC_2	PF13913.6	gi|257052927|ref|YP_003130760.1|	-	9.5	6.3	6.2	28	4.8	0.1	2.5	3	0	0	3	3	3	0	zinc-finger	of	a	C2HC-type
HalX	PF08663.10	gi|257052928|ref|YP_003130761.1|	-	3.9e-19	68.7	4.1	3.9e-19	68.7	4.1	2.0	2	0	0	2	2	2	1	HalX	domain
Response_reg	PF00072.24	gi|257052928|ref|YP_003130761.1|	-	4.5e-19	68.7	0.3	6.8e-19	68.1	0.3	1.3	1	0	0	1	1	1	1	Response	regulator	receiver	domain
DUF2520	PF10728.9	gi|257052928|ref|YP_003130761.1|	-	0.057	13.2	0.0	0.1	12.3	0.0	1.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF2520)
Ribosomal_S14	PF00253.21	gi|257052929|ref|YP_003130762.1|	-	0.037	13.8	2.0	0.049	13.4	2.0	1.2	1	0	0	1	1	1	0	Ribosomal	protein	S14p/S29e
RNA_POL_M_15KD	PF02150.16	gi|257052929|ref|YP_003130762.1|	-	0.35	10.8	2.1	1.8	8.5	0.1	2.2	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
zinc_ribbon_2	PF13240.6	gi|257052929|ref|YP_003130762.1|	-	0.8	9.5	3.6	2.1	8.2	3.6	1.7	1	1	0	1	1	1	0	zinc-ribbon	domain
ATPase	PF06745.13	gi|257052930|ref|YP_003130763.1|	-	2.3e-38	131.9	0.0	2.6e-38	131.7	0.0	1.0	1	0	0	1	1	1	1	KaiC
GvpD	PF07088.11	gi|257052930|ref|YP_003130763.1|	-	8.9e-06	24.6	0.0	0.00013	20.8	0.0	2.0	1	1	0	1	1	1	1	GvpD	gas	vesicle	protein
ATPase_2	PF01637.18	gi|257052930|ref|YP_003130763.1|	-	0.00015	21.8	0.0	0.00026	21.0	0.0	1.3	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
DnaB_C	PF03796.15	gi|257052930|ref|YP_003130763.1|	-	0.00041	19.8	0.0	0.00068	19.1	0.0	1.4	1	0	0	1	1	1	1	DnaB-like	helicase	C	terminal	domain
AAA_25	PF13481.6	gi|257052930|ref|YP_003130763.1|	-	0.00046	19.8	0.0	0.00072	19.2	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_19	PF13245.6	gi|257052930|ref|YP_003130763.1|	-	0.00051	20.4	0.0	0.0008	19.8	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_24	PF13479.6	gi|257052930|ref|YP_003130763.1|	-	0.00073	19.3	0.1	0.037	13.7	0.0	2.2	1	1	1	2	2	2	1	AAA	domain
IstB_IS21	PF01695.17	gi|257052930|ref|YP_003130763.1|	-	0.0031	17.3	0.0	0.0044	16.8	0.0	1.2	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_22	PF13401.6	gi|257052930|ref|YP_003130763.1|	-	0.0064	16.8	0.1	0.0086	16.3	0.1	1.4	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|257052930|ref|YP_003130763.1|	-	0.0081	16.6	0.7	0.14	12.6	0.7	2.2	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
RecA	PF00154.21	gi|257052930|ref|YP_003130763.1|	-	0.0088	15.5	0.1	0.019	14.4	0.0	1.6	2	0	0	2	2	2	1	recA	bacterial	DNA	recombination	protein
AAA_28	PF13521.6	gi|257052930|ref|YP_003130763.1|	-	0.011	15.9	0.0	0.051	13.8	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_33	PF13671.6	gi|257052930|ref|YP_003130763.1|	-	0.013	15.7	0.2	0.022	14.9	0.2	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|257052930|ref|YP_003130763.1|	-	0.017	15.5	0.1	0.038	14.4	0.1	1.7	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_30	PF13604.6	gi|257052930|ref|YP_003130763.1|	-	0.036	13.8	0.0	0.049	13.4	0.0	1.3	1	1	0	1	1	1	0	AAA	domain
T2SSE	PF00437.20	gi|257052930|ref|YP_003130763.1|	-	0.041	12.9	0.0	0.066	12.3	0.0	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
AAA_14	PF13173.6	gi|257052930|ref|YP_003130763.1|	-	0.042	13.9	0.0	0.095	12.7	0.0	1.6	1	1	1	2	2	2	0	AAA	domain
MEDS	PF14417.6	gi|257052930|ref|YP_003130763.1|	-	0.051	13.4	0.0	0.11	12.4	0.0	1.6	1	0	0	1	1	1	0	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
NACHT	PF05729.12	gi|257052930|ref|YP_003130763.1|	-	0.063	13.2	0.0	0.13	12.2	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
cobW	PF02492.19	gi|257052930|ref|YP_003130763.1|	-	0.063	12.9	0.0	0.14	11.7	0.0	1.6	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
Zeta_toxin	PF06414.12	gi|257052930|ref|YP_003130763.1|	-	0.078	12.3	0.0	0.13	11.5	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
ABC_tran	PF00005.27	gi|257052930|ref|YP_003130763.1|	-	0.082	13.4	0.0	0.1	13.1	0.0	1.3	1	1	0	1	1	1	0	ABC	transporter
RNA_helicase	PF00910.22	gi|257052930|ref|YP_003130763.1|	-	0.15	12.5	0.1	0.31	11.4	0.1	1.6	1	1	0	1	1	1	0	RNA	helicase
AAA_18	PF13238.6	gi|257052930|ref|YP_003130763.1|	-	0.18	12.4	0.0	0.33	11.5	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
Invasin_D3	PF09134.10	gi|257052932|ref|YP_003130765.1|	-	0.068	13.5	5.3	1.4	9.2	2.0	2.3	1	1	1	2	2	2	0	Invasin,	domain	3
CarboxypepD_reg	PF13620.6	gi|257052933|ref|YP_003130766.1|	-	1.5e-18	66.8	3.6	1.5e-18	66.8	3.6	3.7	4	1	0	4	4	3	1	Carboxypeptidase	regulatory-like	domain
CarbopepD_reg_2	PF13715.6	gi|257052933|ref|YP_003130766.1|	-	2e-13	50.1	0.2	2e-13	50.1	0.2	2.2	2	1	0	2	2	2	1	CarboxypepD_reg-like	domain
CARDB	PF07705.11	gi|257052933|ref|YP_003130766.1|	-	0.00023	21.4	6.3	0.00023	21.4	6.3	2.7	1	1	3	4	4	4	1	CARDB
PEGA	PF08308.11	gi|257052933|ref|YP_003130766.1|	-	0.0023	17.8	4.6	0.003	17.4	0.2	3.0	3	0	0	3	3	3	1	PEGA	domain
Dockerin_1	PF00404.18	gi|257052933|ref|YP_003130766.1|	-	0.0037	17.4	2.7	0.0037	17.4	2.7	2.4	2	1	0	2	2	2	1	Dockerin	type	I	domain
SdrD_B	PF17210.3	gi|257052933|ref|YP_003130766.1|	-	0.0058	16.8	0.2	0.0058	16.8	0.2	2.8	3	0	0	3	3	3	1	SdrD	B-like	domain
EF-hand_1	PF00036.32	gi|257052933|ref|YP_003130766.1|	-	0.0088	15.5	2.3	2.8	7.7	0.0	3.1	2	0	0	2	2	2	2	EF	hand
fn3_3	PF14686.6	gi|257052933|ref|YP_003130766.1|	-	0.015	15.1	0.6	0.015	15.1	0.6	2.3	2	0	0	2	2	2	0	Polysaccharide	lyase	family	4,	domain	II
Big_3_5	PF16640.5	gi|257052933|ref|YP_003130766.1|	-	0.021	15.0	15.6	0.021	15.0	15.6	4.1	2	1	3	5	5	5	0	Bacterial	Ig-like	domain	(group	3)
YtkA	PF13115.6	gi|257052933|ref|YP_003130766.1|	-	0.076	13.6	2.4	3.4	8.4	0.2	3.6	3	1	1	4	4	4	0	YtkA-like
EF-hand_6	PF13405.6	gi|257052933|ref|YP_003130766.1|	-	0.12	12.4	3.0	3.4	7.8	0.0	2.9	2	0	0	2	2	2	0	EF-hand	domain
DUF824	PF05688.11	gi|257052933|ref|YP_003130766.1|	-	5.1	7.0	11.9	1.1	9.2	1.7	3.5	3	0	0	3	3	3	0	Salmonella	repeat	of	unknown	function	(DUF824)
HTH_IclR	PF09339.10	gi|257052935|ref|YP_003130768.1|	-	8.1e-06	25.5	0.0	1.4e-05	24.8	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|257052935|ref|YP_003130768.1|	-	8.1e-05	22.4	0.0	0.00019	21.3	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|257052935|ref|YP_003130768.1|	-	0.0027	17.2	0.1	0.0067	16.0	0.0	1.7	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
Binary_toxB	PF03495.14	gi|257052935|ref|YP_003130768.1|	-	0.015	15.5	2.5	0.015	15.5	2.5	7.5	3	3	3	6	6	6	0	Clostridial	binary	toxin	B/anthrax	toxin	PA	Ca-binding	domain
TrmB	PF01978.19	gi|257052935|ref|YP_003130768.1|	-	0.16	11.9	0.0	0.3	11.0	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Glycos_transf_2	PF00535.26	gi|257052936|ref|YP_003130769.1|	-	3.5e-20	72.5	0.0	4.7e-20	72.1	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|257052936|ref|YP_003130769.1|	-	3.5e-05	23.8	0.3	4.5e-05	23.5	0.3	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Heliorhodopsin	PF18761.1	gi|257052937|ref|YP_003130770.1|	-	4.9e-97	324.0	16.6	5.5e-97	323.8	16.6	1.0	1	0	0	1	1	1	1	Heliorhodopsin
DUF2070	PF09843.9	gi|257052937|ref|YP_003130770.1|	-	1.7	6.8	12.2	2.1	6.5	12.2	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
HATPase_c	PF02518.26	gi|257052938|ref|YP_003130771.1|	-	1.1e-25	90.3	0.0	3.9e-25	88.5	0.0	1.8	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_3	PF08447.12	gi|257052938|ref|YP_003130771.1|	-	8.3e-16	58.1	0.2	1.1e-13	51.3	0.0	3.1	4	0	0	4	4	4	1	PAS	fold
HisKA	PF00512.25	gi|257052938|ref|YP_003130771.1|	-	5.9e-11	42.2	0.0	1.4e-10	41.1	0.0	1.7	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_4	PF08448.10	gi|257052938|ref|YP_003130771.1|	-	1.3e-08	35.1	0.0	3.2e-08	33.8	0.0	1.7	1	0	0	1	1	1	1	PAS	fold
HATPase_c_5	PF14501.6	gi|257052938|ref|YP_003130771.1|	-	2.7e-05	24.0	0.0	5e-05	23.2	0.0	1.4	1	0	0	1	1	1	1	GHKL	domain
HATPase_c_2	PF13581.6	gi|257052938|ref|YP_003130771.1|	-	3.3e-05	23.8	0.7	0.00016	21.6	0.2	2.1	1	1	1	2	2	2	1	Histidine	kinase-like	ATPase	domain
PAS	PF00989.25	gi|257052938|ref|YP_003130771.1|	-	4.2e-05	23.5	0.0	0.0012	18.8	0.0	2.5	2	0	0	2	2	2	1	PAS	fold
PAS_9	PF13426.7	gi|257052938|ref|YP_003130771.1|	-	9.1e-05	22.7	0.0	0.00025	21.3	0.0	1.8	1	0	0	1	1	1	1	PAS	domain
HATPase_c_3	PF13589.6	gi|257052938|ref|YP_003130771.1|	-	0.0044	16.8	0.0	0.0094	15.8	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
bZIP_1	PF00170.21	gi|257052938|ref|YP_003130771.1|	-	0.0065	16.5	0.4	0.016	15.3	0.4	1.5	1	0	0	1	1	1	1	bZIP	transcription	factor
PAS_8	PF13188.7	gi|257052938|ref|YP_003130771.1|	-	0.028	14.4	0.0	0.17	12.0	0.0	2.3	2	0	0	2	2	2	0	PAS	domain
Response_reg	PF00072.24	gi|257052939|ref|YP_003130772.1|	-	1.2e-20	73.7	0.0	1.5e-20	73.5	0.0	1.1	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HATPase_c	PF02518.26	gi|257052940|ref|YP_003130773.1|	-	1.9e-16	60.6	0.1	3.3e-16	59.8	0.1	1.3	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Response_reg	PF00072.24	gi|257052940|ref|YP_003130773.1|	-	1.9e-15	57.0	0.1	5e-15	55.6	0.1	1.8	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HisKA	PF00512.25	gi|257052940|ref|YP_003130773.1|	-	6.4e-12	45.3	2.6	6.4e-12	45.3	2.6	2.7	3	0	0	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_3	PF13589.6	gi|257052940|ref|YP_003130773.1|	-	0.022	14.6	0.0	0.05	13.4	0.0	1.5	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.6	gi|257052940|ref|YP_003130773.1|	-	0.053	13.5	0.1	0.17	11.9	0.1	2.0	1	1	0	1	1	1	0	Histidine	kinase-like	ATPase	domain
GMC_oxred_C	PF05199.13	gi|257052941|ref|YP_003130774.1|	-	2.9e-24	86.2	0.6	2.1e-23	83.4	0.6	2.2	1	1	0	1	1	1	1	GMC	oxidoreductase
GMC_oxred_N	PF00732.19	gi|257052941|ref|YP_003130774.1|	-	4.8e-16	59.0	0.0	8.8e-16	58.1	0.0	1.4	1	0	0	1	1	1	1	GMC	oxidoreductase
DAO	PF01266.24	gi|257052941|ref|YP_003130774.1|	-	4.2e-11	43.0	2.4	3e-05	23.8	0.1	3.2	3	1	0	3	3	3	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|257052941|ref|YP_003130774.1|	-	9.7e-10	38.1	1.1	0.001	18.2	0.0	2.5	2	0	0	2	2	2	2	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|257052941|ref|YP_003130774.1|	-	6.8e-06	25.5	0.1	0.00016	21.0	0.0	2.7	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|257052941|ref|YP_003130774.1|	-	7.6e-06	26.1	0.4	2.3e-05	24.6	0.4	1.9	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_3	PF01494.19	gi|257052941|ref|YP_003130774.1|	-	1.7e-05	24.2	1.7	0.00037	19.9	0.1	2.2	2	0	0	2	2	2	1	FAD	binding	domain
HI0933_like	PF03486.14	gi|257052941|ref|YP_003130774.1|	-	2.9e-05	23.0	0.4	0.00029	19.7	0.2	2.0	2	0	0	2	2	2	1	HI0933-like	protein
Lycopene_cycl	PF05834.12	gi|257052941|ref|YP_003130774.1|	-	4e-05	22.8	0.1	6e-05	22.3	0.1	1.2	1	0	0	1	1	1	1	Lycopene	cyclase	protein
ApbA	PF02558.16	gi|257052941|ref|YP_003130774.1|	-	0.0019	17.9	0.0	0.0037	16.9	0.0	1.5	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
Pyr_redox	PF00070.27	gi|257052941|ref|YP_003130774.1|	-	0.0089	16.6	0.0	0.1	13.2	0.0	2.5	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.18	gi|257052941|ref|YP_003130774.1|	-	0.014	15.3	0.0	0.029	14.2	0.0	1.5	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Fer4_7	PF12838.7	gi|257052941|ref|YP_003130774.1|	-	0.021	15.4	0.8	0.044	14.4	0.8	1.5	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
TrkA_N	PF02254.18	gi|257052941|ref|YP_003130774.1|	-	0.13	12.6	0.0	0.43	10.9	0.0	1.9	2	0	0	2	2	2	0	TrkA-N	domain
Pyr_redox_3	PF13738.6	gi|257052941|ref|YP_003130774.1|	-	0.2	10.9	0.1	0.4	9.9	0.1	1.4	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Fer4_3	PF12798.7	gi|257052941|ref|YP_003130774.1|	-	1	10.5	3.1	2.2	9.4	3.1	1.6	1	0	0	1	1	1	0	4Fe-4S	binding	domain
Gluconate_2-dh3	PF13618.6	gi|257052942|ref|YP_003130775.1|	-	4e-11	43.3	0.0	5.6e-11	42.8	0.0	1.2	1	0	0	1	1	1	1	Gluconate	2-dehydrogenase	subunit	3
PMT_2	PF13231.6	gi|257052943|ref|YP_003130776.1|	-	8.8e-12	45.5	9.6	8.8e-12	45.5	9.6	3.1	3	0	0	3	3	3	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
Cadherin-like	PF12733.7	gi|257052943|ref|YP_003130776.1|	-	0.03	14.8	0.2	0.074	13.6	0.2	1.6	1	0	0	1	1	1	0	Cadherin-like	beta	sandwich	domain
ABC_tran	PF00005.27	gi|257052944|ref|YP_003130777.1|	-	2.3e-33	115.6	0.0	3.6e-33	115.0	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
TOBE_2	PF08402.10	gi|257052944|ref|YP_003130777.1|	-	2.4e-10	40.4	1.1	7.8e-10	38.8	0.1	2.5	2	0	0	2	2	2	1	TOBE	domain
AAA_21	PF13304.6	gi|257052944|ref|YP_003130777.1|	-	5.1e-08	33.1	0.5	0.00019	21.4	0.1	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|257052944|ref|YP_003130777.1|	-	0.00014	22.2	0.2	0.00057	20.2	0.2	1.8	1	1	0	1	1	1	1	AAA	domain
Rad17	PF03215.15	gi|257052944|ref|YP_003130777.1|	-	0.00087	19.3	0.0	0.0014	18.6	0.0	1.2	1	0	0	1	1	1	1	Rad17	P-loop	domain
AAA_16	PF13191.6	gi|257052944|ref|YP_003130777.1|	-	0.0022	18.4	0.4	0.0053	17.2	0.3	1.8	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.29	gi|257052944|ref|YP_003130777.1|	-	0.0044	17.5	0.0	0.03	14.8	0.0	2.1	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_33	PF13671.6	gi|257052944|ref|YP_003130777.1|	-	0.0095	16.1	0.0	0.032	14.4	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|257052944|ref|YP_003130777.1|	-	0.024	14.3	0.1	0.07	12.8	0.1	1.7	1	1	1	2	2	2	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|257052944|ref|YP_003130777.1|	-	0.026	14.5	0.0	0.054	13.4	0.0	1.5	1	0	0	1	1	1	0	RsgA	GTPase
AAA_28	PF13521.6	gi|257052944|ref|YP_003130777.1|	-	0.058	13.6	0.4	0.14	12.4	0.1	1.7	2	0	0	2	2	2	0	AAA	domain
SbcCD_C	PF13558.6	gi|257052944|ref|YP_003130777.1|	-	0.16	12.2	0.1	0.9	9.8	0.1	2.1	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
BPD_transp_1	PF00528.22	gi|257052945|ref|YP_003130778.1|	-	2.1e-28	99.3	35.9	1.9e-15	57.1	13.5	3.5	3	1	1	4	4	4	2	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_6	PF13343.6	gi|257052946|ref|YP_003130779.1|	-	2e-15	56.9	0.0	2.9e-15	56.4	0.0	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_8	PF13416.6	gi|257052946|ref|YP_003130779.1|	-	1.1e-09	38.6	1.6	1.5e-09	38.1	1.6	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|257052946|ref|YP_003130779.1|	-	1.1e-06	28.9	2.3	1.7e-06	28.3	2.3	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.6	gi|257052946|ref|YP_003130779.1|	-	1.9e-05	24.6	4.8	3.9e-05	23.5	4.8	1.5	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
DnaG_DnaB_bind	PF08278.11	gi|257052946|ref|YP_003130779.1|	-	0.19	12.3	0.1	0.52	10.9	0.0	1.7	2	0	0	2	2	2	0	DNA	primase	DnaG	DnaB-binding
TAT_signal	PF10518.9	gi|257052946|ref|YP_003130779.1|	-	0.55	10.2	9.3	0.2	11.6	6.1	2.0	1	1	1	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
RGP	PF03214.13	gi|257052947|ref|YP_003130780.1|	-	1.4e-13	50.8	0.0	1.7e-13	50.5	0.0	1.3	1	1	0	1	1	1	1	Reversibly	glycosylated	polypeptide
DUF502	PF04367.13	gi|257052948|ref|YP_003130781.1|	-	2.2e-28	98.3	0.2	2.2e-28	98.3	0.2	1.8	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF502)
DUF58	PF01882.18	gi|257052950|ref|YP_003130783.1|	-	1.3e-15	57.4	0.6	1.2e-14	54.3	0.0	2.7	3	0	0	3	3	3	1	Protein	of	unknown	function	DUF58
DUF11	PF01345.18	gi|257052950|ref|YP_003130783.1|	-	2.7e-10	40.4	0.9	6.9e-10	39.1	0.9	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF11
NPCBM_assoc	PF10633.9	gi|257052950|ref|YP_003130783.1|	-	1.5e-07	31.5	1.3	4.9e-07	29.9	0.5	2.1	2	0	0	2	2	2	1	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
CARDB	PF07705.11	gi|257052950|ref|YP_003130783.1|	-	0.072	13.4	0.0	0.17	12.2	0.0	1.5	1	0	0	1	1	1	0	CARDB
DUF533	PF04391.12	gi|257052950|ref|YP_003130783.1|	-	0.18	11.4	0.0	0.37	10.4	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF533)
PRP4	PF08799.11	gi|257052950|ref|YP_003130783.1|	-	0.57	9.8	0.0	0.57	9.8	0.0	3.4	4	0	0	4	4	4	0	pre-mRNA	processing	factor	4	(PRP4)	like
DUF4129	PF13559.6	gi|257052951|ref|YP_003130784.1|	-	7.5e-08	32.5	1.8	7.5e-08	32.5	1.8	2.0	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4129)
SLATT_2	PF18183.1	gi|257052951|ref|YP_003130784.1|	-	0.18	11.5	3.0	0.28	11.0	0.4	2.2	2	0	0	2	2	2	0	SMODS	and	SLOG-associating	2TM	effector	domain	2
MARVEL	PF01284.23	gi|257052951|ref|YP_003130784.1|	-	0.28	11.2	6.4	0.82	9.7	6.4	1.7	1	1	0	1	1	1	0	Membrane-associating	domain
TctB	PF07331.11	gi|257052951|ref|YP_003130784.1|	-	0.76	10.1	12.2	4.3	7.6	9.8	2.5	2	1	0	2	2	2	0	Tripartite	tricarboxylate	transporter	TctB	family
OppC_N	PF12911.7	gi|257052951|ref|YP_003130784.1|	-	1.2	9.2	0.0	1.2	9.2	0.0	2.8	3	1	0	3	3	3	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
DUF2157	PF09925.9	gi|257052951|ref|YP_003130784.1|	-	8.1	6.2	10.3	5	6.9	6.0	2.4	2	1	0	2	2	2	0	Predicted	membrane	protein	(DUF2157)
AAA_3	PF07726.11	gi|257052952|ref|YP_003130785.1|	-	3.7e-63	211.2	0.1	5.8e-63	210.6	0.1	1.3	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_2	PF17863.1	gi|257052952|ref|YP_003130785.1|	-	5.6e-21	74.2	1.4	1e-20	73.3	1.4	1.4	1	0	0	1	1	1	1	AAA	lid	domain
AAA_5	PF07728.14	gi|257052952|ref|YP_003130785.1|	-	2e-13	50.5	0.0	9e-13	48.4	0.0	1.9	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.29	gi|257052952|ref|YP_003130785.1|	-	3.5e-05	24.2	0.0	5.9e-05	23.5	0.0	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Mg_chelatase	PF01078.21	gi|257052952|ref|YP_003130785.1|	-	8.8e-05	22.0	0.1	0.29	10.5	0.0	2.6	2	1	1	3	3	3	2	Magnesium	chelatase,	subunit	ChlI
Sigma54_activat	PF00158.26	gi|257052952|ref|YP_003130785.1|	-	0.00014	21.6	0.0	0.0014	18.4	0.0	2.1	1	1	0	1	1	1	1	Sigma-54	interaction	domain
MCM	PF00493.23	gi|257052952|ref|YP_003130785.1|	-	0.00021	20.5	0.0	0.00029	20.0	0.0	1.3	1	0	0	1	1	1	1	MCM	P-loop	domain
DUF948	PF06103.11	gi|257052954|ref|YP_003130787.1|	-	0.048	13.9	0.6	0.11	12.7	0.6	1.5	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF948)
Alpha_Helical	PF18489.1	gi|257052954|ref|YP_003130787.1|	-	0.12	12.5	0.5	4.5	7.5	0.0	2.5	2	0	0	2	2	2	0	Alpha	helical	domain
Occludin_ELL	PF07303.13	gi|257052955|ref|YP_003130788.1|	-	0.064	14.0	0.5	0.42	11.4	0.3	2.2	1	1	1	2	2	2	0	Occludin	homology	domain
AAA_22	PF13401.6	gi|257052956|ref|YP_003130789.1|	-	3.6e-10	40.3	0.0	3.5e-09	37.1	0.0	2.2	2	1	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|257052956|ref|YP_003130789.1|	-	5e-10	40.0	6.4	1.3e-09	38.7	0.6	3.1	1	1	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.29	gi|257052956|ref|YP_003130789.1|	-	4.7e-06	27.1	0.0	2.9e-05	24.5	0.0	2.4	2	1	0	2	2	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_assoc_2	PF16193.5	gi|257052956|ref|YP_003130789.1|	-	0.00033	20.9	1.9	0.00045	20.5	0.4	2.0	2	0	0	2	2	2	1	AAA	C-terminal	domain
NTPase_1	PF03266.15	gi|257052956|ref|YP_003130789.1|	-	0.00046	20.1	0.2	0.008	16.1	0.1	2.5	2	1	0	2	2	2	1	NTPase
ABC_tran	PF00005.27	gi|257052956|ref|YP_003130789.1|	-	0.0011	19.5	0.0	0.0036	17.8	0.0	1.8	2	1	0	2	2	2	1	ABC	transporter
AAA_18	PF13238.6	gi|257052956|ref|YP_003130789.1|	-	0.0014	19.2	0.2	0.0061	17.1	0.2	2.2	1	1	0	1	1	1	1	AAA	domain
DUF815	PF05673.13	gi|257052956|ref|YP_003130789.1|	-	0.0037	16.5	0.0	0.006	15.8	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
TniB	PF05621.11	gi|257052956|ref|YP_003130789.1|	-	0.0044	16.4	0.0	0.0091	15.4	0.0	1.4	1	0	0	1	1	1	1	Bacterial	TniB	protein
PRK	PF00485.18	gi|257052956|ref|YP_003130789.1|	-	0.0065	16.2	0.0	0.013	15.3	0.0	1.4	1	0	0	1	1	1	1	Phosphoribulokinase	/	Uridine	kinase	family
Zeta_toxin	PF06414.12	gi|257052956|ref|YP_003130789.1|	-	0.007	15.7	2.0	0.034	13.4	0.1	2.7	2	2	1	3	3	3	1	Zeta	toxin
AAA_33	PF13671.6	gi|257052956|ref|YP_003130789.1|	-	0.011	15.9	1.4	0.067	13.4	0.1	2.7	3	1	0	3	3	3	0	AAA	domain
AAA_29	PF13555.6	gi|257052956|ref|YP_003130789.1|	-	0.011	15.5	0.6	0.034	13.9	0.3	1.9	1	1	1	2	2	2	0	P-loop	containing	region	of	AAA	domain
TsaE	PF02367.17	gi|257052956|ref|YP_003130789.1|	-	0.014	15.4	0.8	0.19	11.7	0.0	2.6	2	1	1	3	3	3	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
ATPase_2	PF01637.18	gi|257052956|ref|YP_003130789.1|	-	0.029	14.3	0.0	0.16	11.9	0.0	2.0	2	1	1	3	3	2	0	ATPase	domain	predominantly	from	Archaea
APS_kinase	PF01583.20	gi|257052956|ref|YP_003130789.1|	-	0.046	13.6	0.0	0.086	12.7	0.0	1.4	1	0	0	1	1	1	0	Adenylylsulphate	kinase
AAA_7	PF12775.7	gi|257052956|ref|YP_003130789.1|	-	0.056	13.0	0.0	0.1	12.1	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
Sigma54_activat	PF00158.26	gi|257052956|ref|YP_003130789.1|	-	0.068	12.9	0.0	0.15	11.7	0.0	1.5	1	0	0	1	1	1	0	Sigma-54	interaction	domain
AAA_23	PF13476.6	gi|257052956|ref|YP_003130789.1|	-	0.076	13.5	0.0	0.15	12.6	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Cytidylate_kin	PF02224.18	gi|257052956|ref|YP_003130789.1|	-	0.079	12.7	0.4	0.37	10.5	0.0	2.1	2	1	0	2	2	2	0	Cytidylate	kinase
NB-ARC	PF00931.22	gi|257052956|ref|YP_003130789.1|	-	0.08	12.1	0.0	0.13	11.4	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
Bac_DnaA	PF00308.18	gi|257052956|ref|YP_003130789.1|	-	0.083	12.7	0.0	0.2	11.5	0.0	1.6	2	0	0	2	2	2	0	Bacterial	dnaA	protein
AAA_5	PF07728.14	gi|257052956|ref|YP_003130789.1|	-	0.083	12.9	0.1	0.63	10.0	0.1	2.5	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_19	PF13245.6	gi|257052956|ref|YP_003130789.1|	-	0.087	13.2	0.1	0.29	11.5	0.1	2.0	1	1	0	1	1	1	0	AAA	domain
Penicillinase_R	PF03965.16	gi|257052956|ref|YP_003130789.1|	-	0.096	13.0	0.0	0.18	12.2	0.0	1.5	1	0	0	1	1	1	0	Penicillinase	repressor
RuvB_N	PF05496.12	gi|257052956|ref|YP_003130789.1|	-	0.14	11.9	0.0	0.28	10.9	0.0	1.6	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
Mg_chelatase	PF01078.21	gi|257052956|ref|YP_003130789.1|	-	0.16	11.3	0.0	0.36	10.2	0.0	1.5	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_24	PF13479.6	gi|257052956|ref|YP_003130789.1|	-	0.17	11.6	0.2	0.29	10.8	0.2	1.5	1	1	0	1	1	1	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|257052956|ref|YP_003130789.1|	-	0.19	11.6	0.0	0.4	10.6	0.0	1.5	1	0	0	1	1	1	0	RsgA	GTPase
tRNA_lig_kinase	PF08303.11	gi|257052956|ref|YP_003130789.1|	-	0.22	11.6	0.2	0.58	10.2	0.0	1.7	2	0	0	2	2	1	0	tRNA	ligase	kinase	domain
Rad51	PF08423.11	gi|257052958|ref|YP_003130791.1|	-	0.0037	16.6	0.0	0.0072	15.6	0.0	1.4	1	1	0	1	1	1	1	Rad51
HSBP1	PF06825.12	gi|257052959|ref|YP_003130792.1|	-	3.8e-05	23.4	1.7	0.039	13.8	0.7	2.4	1	1	1	2	2	2	2	Heat	shock	factor	binding	protein	1
SlyX	PF04102.12	gi|257052959|ref|YP_003130792.1|	-	0.0074	16.9	0.4	0.03	15.0	0.2	2.0	2	1	0	2	2	2	1	SlyX
TolA_bind_tri	PF16331.5	gi|257052959|ref|YP_003130792.1|	-	0.0095	16.0	0.0	0.015	15.3	0.0	1.4	1	0	0	1	1	1	1	TolA	binding	protein	trimerisation
Dynamitin	PF04912.14	gi|257052959|ref|YP_003130792.1|	-	0.017	14.5	0.0	0.02	14.2	0.0	1.2	1	0	0	1	1	1	0	Dynamitin
Apolipoprotein	PF01442.18	gi|257052959|ref|YP_003130792.1|	-	0.049	13.5	0.7	3	7.7	0.1	2.0	2	0	0	2	2	2	0	Apolipoprotein	A1/A4/E	domain
DivIC	PF04977.15	gi|257052959|ref|YP_003130792.1|	-	0.056	13.2	0.3	0.083	12.7	0.3	1.2	1	0	0	1	1	1	0	Septum	formation	initiator
ABC_tran_CTD	PF16326.5	gi|257052959|ref|YP_003130792.1|	-	0.095	13.0	2.4	0.21	11.9	1.2	2.1	2	1	0	2	2	2	0	ABC	transporter	C-terminal	domain
DUF4140	PF13600.6	gi|257052959|ref|YP_003130792.1|	-	0.1	13.1	1.5	0.13	12.7	1.4	1.3	1	1	0	1	1	1	0	N-terminal	domain	of	unknown	function	(DUF4140)
AAA_13	PF13166.6	gi|257052959|ref|YP_003130792.1|	-	0.13	10.9	0.0	0.16	10.6	0.0	1.1	1	0	0	1	1	1	0	AAA	domain
TMF_TATA_bd	PF12325.8	gi|257052959|ref|YP_003130792.1|	-	0.13	12.5	0.4	0.19	12.0	0.4	1.2	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	TATA	binding
FlaC_arch	PF05377.11	gi|257052959|ref|YP_003130792.1|	-	0.17	12.3	0.0	0.31	11.5	0.0	1.4	1	0	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
XhlA	PF10779.9	gi|257052959|ref|YP_003130792.1|	-	0.19	11.9	0.1	0.41	10.9	0.1	1.5	1	0	0	1	1	1	0	Haemolysin	XhlA
HalX	PF08663.10	gi|257052959|ref|YP_003130792.1|	-	0.59	10.5	7.4	1	9.7	4.9	2.4	2	1	0	2	2	2	0	HalX	domain
DNA_pol_B	PF00136.21	gi|257052960|ref|YP_003130793.1|	-	2.9e-20	72.4	0.0	4e-18	65.4	0.0	2.3	2	1	0	2	2	2	2	DNA	polymerase	family	B
PAS_3	PF08447.12	gi|257052961|ref|YP_003130794.1|	-	1.6e-58	194.9	0.9	7e-18	64.7	0.0	4.5	4	0	0	4	4	4	4	PAS	fold
PAS_4	PF08448.10	gi|257052961|ref|YP_003130794.1|	-	1.2e-31	109.2	12.7	1.3e-11	44.7	0.0	4.6	5	0	0	5	5	5	3	PAS	fold
PAS_9	PF13426.7	gi|257052961|ref|YP_003130794.1|	-	7.2e-31	106.5	1.8	4.7e-11	42.9	0.0	4.4	4	0	0	4	4	4	4	PAS	domain
PAS	PF00989.25	gi|257052961|ref|YP_003130794.1|	-	1.3e-27	96.0	0.3	1.8e-12	47.2	0.0	4.0	4	0	0	4	4	4	2	PAS	fold
Response_reg	PF00072.24	gi|257052961|ref|YP_003130794.1|	-	1.7e-22	79.7	0.0	4e-22	78.5	0.0	1.7	1	1	0	1	1	1	1	Response	regulator	receiver	domain
PAS_8	PF13188.7	gi|257052961|ref|YP_003130794.1|	-	9.3e-10	38.3	0.0	0.00012	22.0	0.0	3.7	4	0	0	4	4	4	2	PAS	domain
PAS_11	PF14598.6	gi|257052961|ref|YP_003130794.1|	-	6.3e-06	26.3	0.0	0.022	14.9	0.0	3.4	3	0	0	3	3	3	1	PAS	domain
OKR_DC_1_N	PF03709.15	gi|257052961|ref|YP_003130794.1|	-	2.3e-05	24.6	0.1	5.7e-05	23.4	0.1	1.7	1	0	0	1	1	1	1	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
HAS-barrel	PF09378.10	gi|257052961|ref|YP_003130794.1|	-	0.00029	20.9	0.3	0.036	14.2	0.1	3.1	2	0	0	2	2	2	1	HAS	barrel	domain
MEKHLA	PF08670.11	gi|257052961|ref|YP_003130794.1|	-	0.026	14.4	0.0	0.069	13.0	0.0	1.7	1	0	0	1	1	1	0	MEKHLA	domain
LamB_YcsF	PF03746.16	gi|257052961|ref|YP_003130794.1|	-	0.026	14.2	0.3	1.1	8.9	0.0	2.3	2	0	0	2	2	2	0	LamB/YcsF	family
DUF3563	PF12086.8	gi|257052961|ref|YP_003130794.1|	-	0.032	14.0	0.0	0.15	11.8	0.0	2.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3563)
PDDEXK_2	PF12784.7	gi|257052961|ref|YP_003130794.1|	-	0.13	11.8	0.0	13	5.3	0.0	2.9	3	0	0	3	3	3	0	PD-(D/E)XK	nuclease	family	transposase
PAS_7	PF12860.7	gi|257052961|ref|YP_003130794.1|	-	0.16	12.2	8.3	16	5.7	0.0	5.2	5	1	0	5	5	5	0	PAS	fold
Beta-Casp	PF10996.8	gi|257052962|ref|YP_003130795.1|	-	9e-13	48.5	0.0	1.9e-12	47.4	0.0	1.5	1	0	0	1	1	1	1	Beta-Casp	domain
RMMBL	PF07521.12	gi|257052962|ref|YP_003130795.1|	-	4.2e-10	39.4	0.0	1.1e-09	38.0	0.0	1.8	1	0	0	1	1	1	1	Zn-dependent	metallo-hydrolase	RNA	specificity	domain
Lactamase_B	PF00753.27	gi|257052962|ref|YP_003130795.1|	-	2.5e-09	37.5	5.3	7.3e-09	35.9	5.3	1.8	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|257052962|ref|YP_003130795.1|	-	4.2e-07	29.7	1.3	1.1e-06	28.3	0.7	1.9	2	0	0	2	2	2	1	Beta-lactamase	superfamily	domain
Lactamase_B_6	PF16661.5	gi|257052962|ref|YP_003130795.1|	-	0.00042	19.8	0.0	0.00069	19.1	0.0	1.3	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.6	gi|257052962|ref|YP_003130795.1|	-	0.057	13.3	0.1	0.16	11.8	0.1	1.8	1	1	0	1	1	1	0	Beta-lactamase	superfamily	domain
Rhodanese	PF00581.20	gi|257052962|ref|YP_003130795.1|	-	0.079	13.5	0.0	0.16	12.5	0.0	1.5	1	0	0	1	1	1	0	Rhodanese-like	domain
G_glu_transpept	PF01019.21	gi|257052963|ref|YP_003130796.1|	-	8.8e-139	463.6	0.1	1e-138	463.4	0.1	1.0	1	0	0	1	1	1	1	Gamma-glutamyltranspeptidase
MFS_1	PF07690.16	gi|257052964|ref|YP_003130797.1|	-	2.9e-33	115.3	48.8	1.3e-26	93.4	38.4	2.2	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.7	gi|257052964|ref|YP_003130797.1|	-	0.86	8.4	10.1	2.2	7.1	3.1	3.2	2	1	1	3	3	3	0	MFS_1	like	family
TFIIB	PF00382.19	gi|257052965|ref|YP_003130798.1|	-	2e-31	107.9	0.0	3.9e-17	62.1	0.0	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|257052965|ref|YP_003130798.1|	-	1.1e-14	53.6	3.1	2e-14	52.8	3.1	1.4	1	0	0	1	1	1	1	TFIIB	zinc-binding
Sigma70_r4	PF04545.16	gi|257052965|ref|YP_003130798.1|	-	0.0065	16.0	0.1	0.11	12.1	0.0	2.6	2	0	0	2	2	2	1	Sigma-70,	region	4
OrfB_Zn_ribbon	PF07282.11	gi|257052965|ref|YP_003130798.1|	-	0.013	15.4	1.1	0.027	14.4	1.1	1.5	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
DZR	PF12773.7	gi|257052965|ref|YP_003130798.1|	-	0.038	14.0	0.3	0.067	13.2	0.3	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
UMPH-1	PF05822.12	gi|257052965|ref|YP_003130798.1|	-	0.074	12.6	0.0	0.11	12.0	0.0	1.2	1	0	0	1	1	1	0	Pyrimidine	5'-nucleotidase	(UMPH-1)
zf-ISL3	PF14690.6	gi|257052965|ref|YP_003130798.1|	-	0.079	13.6	1.6	0.53	11.0	0.9	2.4	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
Zn-ribbon_8	PF09723.10	gi|257052965|ref|YP_003130798.1|	-	0.18	12.0	1.0	2.5	8.3	0.1	2.4	2	0	0	2	2	2	0	Zinc	ribbon	domain
zf_UBZ	PF18439.1	gi|257052965|ref|YP_003130798.1|	-	0.24	11.0	0.8	13	5.5	0.1	2.5	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
zf-ribbon_3	PF13248.6	gi|257052965|ref|YP_003130798.1|	-	0.6	9.6	3.4	8.2	6.0	3.4	2.2	1	1	1	2	2	2	0	zinc-ribbon	domain
Nudix_N_2	PF14803.6	gi|257052965|ref|YP_003130798.1|	-	0.7	9.9	4.0	3	7.8	4.0	2.1	1	1	0	1	1	1	0	Nudix	N-terminal
zf-NADH-PPase	PF09297.11	gi|257052965|ref|YP_003130798.1|	-	1.6	8.4	3.6	4.2	7.1	3.6	1.7	1	0	0	1	1	1	0	NADH	pyrophosphatase	zinc	ribbon	domain
zf-TFIIB	PF13453.6	gi|257052965|ref|YP_003130798.1|	-	2.1	7.8	4.5	0.48	9.8	0.2	2.0	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
TrmB	PF01978.19	gi|257052966|ref|YP_003130799.1|	-	8.8e-18	64.0	0.0	1.6e-17	63.1	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Regulator_TrmB	PF11495.8	gi|257052966|ref|YP_003130799.1|	-	5e-05	22.6	0.1	7.6e-05	22.0	0.1	1.4	1	1	0	1	1	1	1	Archaeal	transcriptional	regulator	TrmB
Rrf2	PF02082.20	gi|257052966|ref|YP_003130799.1|	-	0.044	14.1	0.0	0.078	13.3	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	regulator
Fer2	PF00111.27	gi|257052967|ref|YP_003130800.1|	-	6.7e-13	48.4	0.4	1.1e-12	47.7	0.4	1.4	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
SKICH	PF17751.1	gi|257052968|ref|YP_003130801.1|	-	0.00026	21.5	0.1	0.0004	20.9	0.1	1.3	1	0	0	1	1	1	1	SKICH	domain
Imm17	PF15562.6	gi|257052968|ref|YP_003130801.1|	-	3.8	7.5	6.7	7.5	6.5	0.1	3.0	3	0	0	3	3	3	0	Immunity	protein	17
Fic_N	PF13784.6	gi|257052969|ref|YP_003130802.1|	-	4.7e-21	74.6	0.8	9.1e-21	73.7	0.8	1.5	1	0	0	1	1	1	1	Fic/DOC	family	N-terminal
Fic	PF02661.18	gi|257052969|ref|YP_003130802.1|	-	2e-20	73.5	0.0	1.2e-19	71.0	0.0	2.4	3	1	1	4	4	4	1	Fic/DOC	family
HTH_24	PF13412.6	gi|257052969|ref|YP_003130802.1|	-	0.002	17.6	0.0	0.0038	16.7	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
PDDEXK_5	PF11645.8	gi|257052971|ref|YP_003130804.1|	-	2.5e-15	56.6	2.2	1.6e-14	54.1	2.2	1.8	1	1	0	1	1	1	1	PD-(D/E)XK	endonuclease
DUF5608	PF18356.1	gi|257052971|ref|YP_003130804.1|	-	0.084	12.9	0.0	0.14	12.2	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5608)
DUF4268	PF14088.6	gi|257052973|ref|YP_003130806.1|	-	6e-15	55.3	0.0	9.7e-15	54.7	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4268)
NucS	PF01939.16	gi|257052973|ref|YP_003130806.1|	-	0.014	14.7	0.0	0.025	13.9	0.0	1.4	1	0	0	1	1	1	0	Endonuclease	NucS
HTH_20	PF12840.7	gi|257052974|ref|YP_003130807.1|	-	2e-07	30.9	0.4	1.1e-06	28.5	0.1	2.0	1	1	1	2	2	2	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|257052974|ref|YP_003130807.1|	-	9.8e-05	22.2	0.4	0.00019	21.2	0.0	1.6	2	0	0	2	2	2	1	MarR	family
HTH_15	PF12324.8	gi|257052974|ref|YP_003130807.1|	-	0.0003	20.7	2.3	0.0031	17.4	0.1	2.2	1	1	1	2	2	2	1	Helix-turn-helix	domain	of	alkylmercury	lyase
HTH_28	PF13518.6	gi|257052974|ref|YP_003130807.1|	-	0.0021	18.2	0.0	0.0041	17.2	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|257052974|ref|YP_003130807.1|	-	0.0021	17.9	0.0	0.0034	17.2	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_29	PF13551.6	gi|257052974|ref|YP_003130807.1|	-	0.0026	17.8	0.0	0.0045	17.0	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn	helix
HU-CCDC81_bac_2	PF18175.1	gi|257052974|ref|YP_003130807.1|	-	0.0032	17.3	0.3	0.071	13.0	0.0	2.2	2	0	0	2	2	2	1	CCDC81-like	prokaryotic	HU	domain	2
HTH_24	PF13412.6	gi|257052974|ref|YP_003130807.1|	-	0.0051	16.4	1.6	0.0063	16.1	0.1	1.8	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_1	PF00126.27	gi|257052974|ref|YP_003130807.1|	-	0.015	15.2	0.0	0.028	14.4	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_27	PF13463.6	gi|257052974|ref|YP_003130807.1|	-	0.024	15.1	0.0	0.038	14.5	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_IclR	PF09339.10	gi|257052974|ref|YP_003130807.1|	-	0.033	14.0	0.0	0.061	13.1	0.0	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
Bac_DNA_binding	PF00216.21	gi|257052974|ref|YP_003130807.1|	-	0.041	14.1	0.3	0.11	12.7	0.1	1.7	2	0	0	2	2	2	0	Bacterial	DNA-binding	protein
ZapA	PF05164.13	gi|257052974|ref|YP_003130807.1|	-	0.044	14.2	0.1	0.1	13.0	0.1	1.5	1	0	0	1	1	1	0	Cell	division	protein	ZapA
DUF2250	PF10007.9	gi|257052974|ref|YP_003130807.1|	-	0.096	12.8	0.0	0.15	12.2	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
TBPIP	PF07106.13	gi|257052975|ref|YP_003130808.1|	-	0.00011	22.0	0.0	0.00018	21.4	0.0	1.3	1	0	0	1	1	1	1	TBPIP/Hop2	winged	helix	domain
HTH_24	PF13412.6	gi|257052975|ref|YP_003130808.1|	-	0.0051	16.4	0.0	0.01	15.4	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.12	gi|257052975|ref|YP_003130808.1|	-	0.014	15.3	0.0	0.026	14.5	0.0	1.4	1	0	0	1	1	1	0	HTH	domain
Phage_rep_O	PF04492.13	gi|257052975|ref|YP_003130808.1|	-	0.1	13.2	0.0	0.19	12.4	0.0	1.3	1	0	0	1	1	1	0	Bacteriophage	replication	protein	O
HTH_IclR	PF09339.10	gi|257052975|ref|YP_003130808.1|	-	0.18	11.6	0.0	0.33	10.8	0.0	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
Voltage_CLC	PF00654.20	gi|257052976|ref|YP_003130809.1|	-	0.0079	15.5	4.0	0.0094	15.2	4.0	1.2	1	0	0	1	1	1	1	Voltage	gated	chloride	channel
DUF3169	PF11368.8	gi|257052976|ref|YP_003130809.1|	-	0.13	11.8	4.7	0.13	11.7	1.6	2.1	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3169)
ABC_tran	PF00005.27	gi|257052978|ref|YP_003130811.1|	-	0.017	15.6	0.0	0.16	12.5	0.0	2.5	2	0	0	2	2	2	0	ABC	transporter
DUF1788	PF08747.11	gi|257052979|ref|YP_003130812.1|	-	1.6e-14	54.0	0.0	2.1e-14	53.6	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1788)
EIIA-man	PF03610.16	gi|257052979|ref|YP_003130812.1|	-	0.00061	20.0	0.0	0.00095	19.4	0.0	1.3	1	0	0	1	1	1	1	PTS	system	fructose	IIA	component
AFG1_ATPase	PF03969.16	gi|257052980|ref|YP_003130813.1|	-	0.078	11.9	0.0	0.16	10.8	0.0	1.4	1	0	0	1	1	1	0	AFG1-like	ATPase
AAA_22	PF13401.6	gi|257052980|ref|YP_003130813.1|	-	0.082	13.2	0.3	15	5.9	0.0	4.2	4	1	1	5	5	5	0	AAA	domain
GGDEF_2	PF17853.1	gi|257052980|ref|YP_003130813.1|	-	0.099	12.9	6.3	5.2	7.4	0.1	4.6	4	0	0	4	4	4	0	GGDEF-like	domain
Nup88	PF10168.9	gi|257052980|ref|YP_003130813.1|	-	0.22	9.3	1.3	0.37	8.5	1.3	1.3	1	0	0	1	1	1	0	Nuclear	pore	component
DUF948	PF06103.11	gi|257052980|ref|YP_003130813.1|	-	0.34	11.2	1.8	5.4	7.4	0.2	3.3	3	0	0	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF948)
KfrA_N	PF11740.8	gi|257052980|ref|YP_003130813.1|	-	2.7	8.7	19.7	2.1	9.0	0.8	4.7	4	0	0	4	4	4	0	Plasmid	replication	region	DNA-binding	N-term
PqqD	PF05402.12	gi|257052980|ref|YP_003130813.1|	-	4.3	7.7	8.1	36	4.8	0.1	5.6	5	1	1	6	6	6	0	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
UPF0175	PF03683.13	gi|257052982|ref|YP_003130815.1|	-	2.6e-07	30.3	0.0	6.4e-07	29.0	0.0	1.7	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0175)
DUF948	PF06103.11	gi|257052983|ref|YP_003130816.1|	-	0.0042	17.3	0.8	0.13	12.6	0.1	2.2	1	1	1	2	2	2	1	Bacterial	protein	of	unknown	function	(DUF948)
PLU-1	PF08429.11	gi|257052983|ref|YP_003130816.1|	-	0.018	14.3	0.3	0.023	13.9	0.3	1.1	1	0	0	1	1	1	0	PLU-1-like	protein
MatP_C	PF17414.2	gi|257052983|ref|YP_003130816.1|	-	0.021	15.0	2.3	0.47	10.7	0.1	2.3	2	0	0	2	2	2	0	MatP	C-terminal	ribbon-helix-helix	domain
AvrE_T3Es	PF11725.8	gi|257052983|ref|YP_003130816.1|	-	0.024	11.9	0.0	0.024	11.9	0.0	1.1	1	0	0	1	1	1	0	AvrE-family	Type-III	effector	proteins	(T3Es)
FeoB_Cyto	PF17910.1	gi|257052983|ref|YP_003130816.1|	-	0.03	14.9	2.1	3.7	8.2	0.2	2.2	2	0	0	2	2	2	0	FeoB	cytosolic	helical	domain
HisKA_3	PF07730.13	gi|257052983|ref|YP_003130816.1|	-	0.089	13.3	1.8	0.83	10.2	0.1	2.3	1	1	0	2	2	2	0	Histidine	kinase
ECH_2	PF16113.5	gi|257052983|ref|YP_003130816.1|	-	0.09	12.3	0.2	0.1	12.1	0.2	1.1	1	0	0	1	1	1	0	Enoyl-CoA	hydratase/isomerase
Spectrin	PF00435.21	gi|257052983|ref|YP_003130816.1|	-	0.11	13.0	3.9	1	9.9	3.5	2.3	1	1	0	1	1	1	0	Spectrin	repeat
PTS_IIA	PF02255.16	gi|257052983|ref|YP_003130816.1|	-	0.13	12.4	0.5	0.67	10.0	0.1	2.2	2	1	0	2	2	2	0	PTS	system,	Lactose/Cellobiose	specific	IIA	subunit
PASTA	PF03793.19	gi|257052983|ref|YP_003130816.1|	-	0.13	12.1	2.3	1.1	9.2	0.2	2.5	1	1	1	2	2	2	0	PASTA	domain
Phage_TAC_12	PF12363.8	gi|257052983|ref|YP_003130816.1|	-	0.17	12.3	2.5	0.24	11.8	0.3	2.1	1	1	1	2	2	2	0	Phage	tail	assembly	chaperone	protein,	TAC
Exonuc_VII_S	PF02609.16	gi|257052983|ref|YP_003130816.1|	-	2.8	8.1	10.5	0.42	10.7	0.7	3.5	3	1	1	4	4	4	0	Exonuclease	VII	small	subunit
AAA_15	PF13175.6	gi|257052984|ref|YP_003130817.1|	-	1.2e-42	147.0	10.7	4.6e-42	145.1	10.7	1.9	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_21	PF13304.6	gi|257052984|ref|YP_003130817.1|	-	1.2e-16	61.4	4.4	1.8e-08	34.6	0.0	3.2	3	1	0	3	3	3	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_23	PF13476.6	gi|257052984|ref|YP_003130817.1|	-	4.2e-09	37.2	3.1	4.2e-09	37.2	3.1	1.8	2	0	0	2	2	2	1	AAA	domain
DUF2813	PF11398.8	gi|257052984|ref|YP_003130817.1|	-	2.2e-07	30.5	3.0	9.5e-05	21.8	0.0	2.7	2	1	0	3	3	3	2	Protein	of	unknown	function	(DUF2813)
AAA_27	PF13514.6	gi|257052984|ref|YP_003130817.1|	-	9.4e-07	28.6	0.0	1.9e-06	27.6	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|257052984|ref|YP_003130817.1|	-	6.1e-05	22.6	4.4	0.0023	17.4	4.4	2.6	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|257052984|ref|YP_003130817.1|	-	0.00041	20.0	0.0	0.00084	19.0	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
ABC_tran	PF00005.27	gi|257052984|ref|YP_003130817.1|	-	0.0084	16.6	0.8	1.6	9.3	0.0	2.9	3	0	0	3	3	3	1	ABC	transporter
AAA_13	PF13166.6	gi|257052984|ref|YP_003130817.1|	-	0.062	11.9	4.3	0.16	10.6	2.5	2.4	1	1	1	2	2	2	0	AAA	domain
N6_Mtase	PF02384.16	gi|257052985|ref|YP_003130818.1|	-	4.4e-10	39.3	0.0	5.2e-06	26.0	0.0	3.3	3	0	0	3	3	3	2	N-6	DNA	Methylase
UPF0020	PF01170.18	gi|257052985|ref|YP_003130818.1|	-	0.00035	20.3	0.0	0.15	11.7	0.0	2.7	2	0	0	2	2	2	2	Putative	RNA	methylase	family	UPF0020
Methyltransf_31	PF13847.6	gi|257052985|ref|YP_003130818.1|	-	0.002	17.9	0.8	0.0055	16.5	0.1	2.1	2	0	0	2	2	2	1	Methyltransferase	domain
HBS1_N	PF08938.10	gi|257052985|ref|YP_003130818.1|	-	0.4	11.0	4.0	1.4	9.3	1.6	3.3	2	0	0	2	2	2	0	HBS1	N-terminus
TBP	PF00352.21	gi|257052986|ref|YP_003130819.1|	-	3.8e-35	119.7	0.0	6.9e-20	70.8	0.0	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIID	(or	TATA-binding	protein,	TBP)
PqqD	PF05402.12	gi|257052986|ref|YP_003130819.1|	-	0.0012	19.1	0.3	0.027	14.8	0.0	3.0	4	0	0	4	4	4	1	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
PglZ	PF08665.12	gi|257052987|ref|YP_003130820.1|	-	2e-09	37.8	0.0	3.9e-09	36.9	0.0	1.5	1	0	0	1	1	1	1	PglZ	domain
HEPN_Apea	PF18739.1	gi|257052988|ref|YP_003130821.1|	-	2.9e-07	30.8	0.0	6.2e-07	29.8	0.0	1.5	1	0	0	1	1	1	1	Apea-like	HEPN
GNAT_acetyltran	PF12746.7	gi|257052988|ref|YP_003130821.1|	-	0.19	11.3	0.0	0.34	10.5	0.0	1.4	1	0	0	1	1	1	0	GNAT	acetyltransferase
FidL_like	PF15941.5	gi|257052988|ref|YP_003130821.1|	-	0.22	12.0	0.4	0.72	10.3	0.0	2.0	2	0	0	2	2	2	0	FidL-like	putative	membrane	protein
Helicase_C	PF00271.31	gi|257052989|ref|YP_003130822.1|	-	2.8e-23	82.4	0.0	7.7e-23	81.0	0.0	1.8	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
SNF2_N	PF00176.23	gi|257052989|ref|YP_003130822.1|	-	3.8e-19	68.6	0.0	2.9e-17	62.4	0.0	2.3	1	1	0	1	1	1	1	SNF2	family	N-terminal	domain
ResIII	PF04851.15	gi|257052989|ref|YP_003130822.1|	-	5.1e-12	46.1	0.0	4.4e-11	43.1	0.0	2.5	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.29	gi|257052989|ref|YP_003130822.1|	-	9.3e-06	25.5	0.0	2.3e-05	24.3	0.0	1.7	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
Helicase_C_4	PF13871.6	gi|257052989|ref|YP_003130822.1|	-	0.0017	18.1	0.0	0.076	12.7	0.0	2.4	2	0	0	2	2	2	1	C-terminal	domain	on	Strawberry	notch	homologue
AAA_34	PF13872.6	gi|257052989|ref|YP_003130822.1|	-	0.0021	17.0	0.7	0.0061	15.5	0.7	1.7	1	1	0	1	1	1	1	P-loop	containing	NTP	hydrolase	pore-1
RapA_C	PF12137.8	gi|257052989|ref|YP_003130822.1|	-	0.0026	16.8	0.1	0.0026	16.8	0.1	2.7	2	0	0	2	2	2	1	RNA	polymerase	recycling	family	C-terminal
Helicase_C_2	PF13307.6	gi|257052989|ref|YP_003130822.1|	-	0.0048	17.1	1.0	0.021	15.0	0.0	2.4	2	1	1	3	3	3	1	Helicase	C-terminal	domain
KxDL	PF10241.9	gi|257052989|ref|YP_003130822.1|	-	0.013	15.8	1.8	0.68	10.3	1.7	2.9	2	0	0	2	2	2	0	Uncharacterized	conserved	protein
DUF2075	PF09848.9	gi|257052989|ref|YP_003130822.1|	-	0.039	13.2	3.1	0.05	12.8	0.0	2.7	4	0	0	4	4	4	0	Uncharacterized	conserved	protein	(DUF2075)
DUF16	PF01519.16	gi|257052989|ref|YP_003130822.1|	-	9.7	6.7	7.3	1.7	9.2	2.4	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	DUF16
UvrD-helicase	PF00580.21	gi|257052990|ref|YP_003130823.1|	-	7.4e-50	170.2	0.0	2.6e-49	168.4	0.0	1.8	1	1	0	1	1	1	1	UvrD/REP	helicase	N-terminal	domain
UvrD_C	PF13361.6	gi|257052990|ref|YP_003130823.1|	-	7.4e-32	111.1	0.0	6.5e-19	68.5	0.0	2.3	1	1	1	2	2	2	2	UvrD-like	helicase	C-terminal	domain
AAA_19	PF13245.6	gi|257052990|ref|YP_003130823.1|	-	3.8e-24	85.7	0.0	6.9e-23	81.6	0.0	2.6	1	1	0	1	1	1	1	AAA	domain
PDDEXK_1	PF12705.7	gi|257052990|ref|YP_003130823.1|	-	3.2e-10	40.4	1.8	7.8e-09	35.8	1.8	2.6	1	1	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
UvrD_C_2	PF13538.6	gi|257052990|ref|YP_003130823.1|	-	4.2e-10	39.3	0.2	0.00013	21.7	0.1	2.7	2	0	0	2	2	2	2	UvrD-like	helicase	C-terminal	domain
AAA_30	PF13604.6	gi|257052990|ref|YP_003130823.1|	-	5.8e-06	26.2	0.3	3.5e-05	23.6	0.0	2.5	3	0	0	3	3	3	1	AAA	domain
Viral_helicase1	PF01443.18	gi|257052990|ref|YP_003130823.1|	-	0.0097	15.7	0.1	11	5.6	0.0	3.4	3	0	0	3	3	3	1	Viral	(Superfamily	1)	RNA	helicase
AAA_11	PF13086.6	gi|257052990|ref|YP_003130823.1|	-	0.014	15.2	0.0	0.58	9.9	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_12	PF13087.6	gi|257052990|ref|YP_003130823.1|	-	0.021	14.4	0.0	0.19	11.3	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
PhoH	PF02562.16	gi|257052990|ref|YP_003130823.1|	-	0.04	13.4	0.0	7.3	6.0	0.0	2.3	2	0	0	2	2	2	0	PhoH-like	protein
AAA_22	PF13401.6	gi|257052990|ref|YP_003130823.1|	-	0.15	12.4	0.0	0.86	9.9	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
Cas_Cas4	PF01930.17	gi|257052990|ref|YP_003130823.1|	-	0.23	11.5	0.3	0.67	10.1	0.3	1.7	1	1	0	1	1	1	0	Domain	of	unknown	function	DUF83
Hemerythrin	PF01814.23	gi|257052990|ref|YP_003130823.1|	-	5.6	7.6	7.6	1.3	9.6	0.2	3.6	4	0	0	4	4	4	0	Hemerythrin	HHE	cation	binding	domain
PDDEXK_1	PF12705.7	gi|257052991|ref|YP_003130824.1|	-	3.2e-12	46.9	0.3	8.2e-12	45.6	0.0	1.8	2	0	0	2	2	2	1	PD-(D/E)XK	nuclease	superfamily
YdjM	PF04307.14	gi|257052992|ref|YP_003130825.1|	-	1.3e-13	50.6	11.2	3.9e-13	49.1	11.2	1.7	1	1	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
Acetyltransf_7	PF13508.7	gi|257052994|ref|YP_003130827.1|	-	1.8e-08	34.7	0.0	2.7e-08	34.1	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|257052994|ref|YP_003130827.1|	-	2.1e-06	27.7	0.0	2.8e-06	27.3	0.0	1.3	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|257052994|ref|YP_003130827.1|	-	5.2e-05	23.4	0.0	7e-05	23.0	0.0	1.3	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Rep_fac_C	PF08542.11	gi|257052996|ref|YP_003130829.1|	-	7.8e-24	83.9	0.0	2e-23	82.6	0.0	1.7	1	0	0	1	1	1	1	Replication	factor	C	C-terminal	domain
AAA	PF00004.29	gi|257052996|ref|YP_003130829.1|	-	2.4e-18	66.8	0.0	1.4e-17	64.4	0.0	2.0	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DNA_pol3_delta2	PF13177.6	gi|257052996|ref|YP_003130829.1|	-	5.9e-16	58.7	0.0	2.7e-11	43.5	0.0	2.2	1	1	1	2	2	2	2	DNA	polymerase	III,	delta	subunit
Rad17	PF03215.15	gi|257052996|ref|YP_003130829.1|	-	7.4e-08	32.5	0.0	1.3e-07	31.7	0.0	1.4	1	0	0	1	1	1	1	Rad17	P-loop	domain
RuvB_N	PF05496.12	gi|257052996|ref|YP_003130829.1|	-	8.9e-08	32.0	0.0	1.1e-06	28.5	0.0	2.3	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_14	PF13173.6	gi|257052996|ref|YP_003130829.1|	-	2.4e-06	27.6	0.0	3.7e-06	27.0	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_assoc_2	PF16193.5	gi|257052996|ref|YP_003130829.1|	-	3.2e-05	24.2	0.1	0.00013	22.2	0.1	2.1	1	1	0	1	1	1	1	AAA	C-terminal	domain
DNA_pol3_delta	PF06144.13	gi|257052996|ref|YP_003130829.1|	-	3.4e-05	23.7	0.0	5.3e-05	23.1	0.0	1.2	1	0	0	1	1	1	1	DNA	polymerase	III,	delta	subunit
AAA_16	PF13191.6	gi|257052996|ref|YP_003130829.1|	-	6.3e-05	23.4	6.1	0.0029	18.0	0.0	3.3	2	2	1	3	3	3	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|257052996|ref|YP_003130829.1|	-	0.00011	22.4	0.2	0.2	11.9	0.1	2.7	2	1	0	2	2	1	1	AAA	domain
ResIII	PF04851.15	gi|257052996|ref|YP_003130829.1|	-	0.00027	21.0	0.0	0.0045	17.0	0.0	2.2	1	1	1	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
AAA_18	PF13238.6	gi|257052996|ref|YP_003130829.1|	-	0.00054	20.5	0.0	0.0012	19.4	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
Mg_chelatase	PF01078.21	gi|257052996|ref|YP_003130829.1|	-	0.0011	18.4	0.0	0.18	11.2	0.0	2.2	2	0	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
Sigma54_activat	PF00158.26	gi|257052996|ref|YP_003130829.1|	-	0.0011	18.7	0.0	0.058	13.1	0.0	2.3	1	1	0	1	1	1	1	Sigma-54	interaction	domain
AAA_24	PF13479.6	gi|257052996|ref|YP_003130829.1|	-	0.0018	18.0	0.0	0.0035	17.1	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_7	PF12775.7	gi|257052996|ref|YP_003130829.1|	-	0.0031	17.0	0.0	0.0049	16.4	0.0	1.3	1	0	0	1	1	1	1	P-loop	containing	dynein	motor	region
IstB_IS21	PF01695.17	gi|257052996|ref|YP_003130829.1|	-	0.0052	16.5	0.0	0.012	15.4	0.0	1.6	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_3	PF07726.11	gi|257052996|ref|YP_003130829.1|	-	0.0061	16.4	0.0	0.012	15.5	0.0	1.5	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
TIP49	PF06068.13	gi|257052996|ref|YP_003130829.1|	-	0.0082	15.4	0.0	0.05	12.8	0.0	2.0	2	0	0	2	2	2	1	TIP49	P-loop	domain
AAA_25	PF13481.6	gi|257052996|ref|YP_003130829.1|	-	0.0087	15.6	0.1	0.027	14.1	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
AAA_2	PF07724.14	gi|257052996|ref|YP_003130829.1|	-	0.015	15.4	0.0	0.038	14.1	0.0	1.7	1	0	0	1	1	1	0	AAA	domain	(Cdc48	subfamily)
Viral_helicase1	PF01443.18	gi|257052996|ref|YP_003130829.1|	-	0.018	14.8	0.0	0.026	14.3	0.0	1.2	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
AAA_5	PF07728.14	gi|257052996|ref|YP_003130829.1|	-	0.019	15.0	0.0	0.081	12.9	0.0	2.0	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
DUF3400	PF11880.8	gi|257052996|ref|YP_003130829.1|	-	0.026	14.0	0.0	0.076	12.5	0.0	1.8	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3400)
AAA_23	PF13476.6	gi|257052996|ref|YP_003130829.1|	-	0.028	14.9	0.0	0.056	13.9	0.0	1.4	1	1	0	1	1	1	0	AAA	domain
RNA_helicase	PF00910.22	gi|257052996|ref|YP_003130829.1|	-	0.036	14.5	0.0	0.072	13.5	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
AAA_30	PF13604.6	gi|257052996|ref|YP_003130829.1|	-	0.056	13.2	1.7	0.11	12.2	0.1	2.3	2	2	0	2	2	2	0	AAA	domain
ThiP_synth	PF10120.9	gi|257052996|ref|YP_003130829.1|	-	0.059	13.0	0.0	0.12	11.9	0.0	1.5	1	0	0	1	1	1	0	Thiamine-phosphate	synthase
TrwB_AAD_bind	PF10412.9	gi|257052996|ref|YP_003130829.1|	-	0.064	12.1	0.0	1.5	7.6	0.0	2.1	2	0	0	2	2	2	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
NB-ARC	PF00931.22	gi|257052996|ref|YP_003130829.1|	-	0.066	12.4	0.0	0.1	11.8	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
NACHT	PF05729.12	gi|257052996|ref|YP_003130829.1|	-	0.078	12.9	0.0	0.21	11.5	0.0	1.7	1	0	0	1	1	1	0	NACHT	domain
AAA_33	PF13671.6	gi|257052996|ref|YP_003130829.1|	-	0.097	12.8	0.0	0.19	11.9	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
TsaE	PF02367.17	gi|257052996|ref|YP_003130829.1|	-	0.11	12.5	0.0	0.23	11.5	0.0	1.5	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_29	PF13555.6	gi|257052996|ref|YP_003130829.1|	-	0.12	12.2	0.0	0.25	11.1	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
NTPase_1	PF03266.15	gi|257052996|ref|YP_003130829.1|	-	0.12	12.2	0.0	0.63	9.9	0.0	2.0	2	0	0	2	2	2	0	NTPase
ArsA_ATPase	PF02374.15	gi|257052996|ref|YP_003130829.1|	-	0.15	11.2	0.0	0.26	10.4	0.0	1.4	1	0	0	1	1	1	0	Anion-transporting	ATPase
Sensor	PF13796.6	gi|257052997|ref|YP_003130830.1|	-	3.2e-38	131.3	19.1	3.7e-38	131.1	19.1	1.0	1	0	0	1	1	1	1	Putative	sensor
DUF3899	PF13038.6	gi|257052997|ref|YP_003130830.1|	-	0.26	11.8	3.1	0.75	10.3	0.0	2.7	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF3899)
PMT	PF02366.18	gi|257052997|ref|YP_003130830.1|	-	1.7	8.2	15.8	3.1e+02	0.8	15.8	2.1	1	1	0	1	1	1	0	Dolichyl-phosphate-mannose-protein	mannosyltransferase
tRNA-synt_2c	PF01411.19	gi|257052998|ref|YP_003130831.1|	-	8.1e-118	394.3	0.0	1.1e-117	393.9	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(A)
DHHA1	PF02272.19	gi|257052998|ref|YP_003130831.1|	-	7.8e-18	65.2	2.7	2e-17	63.9	2.7	1.8	1	0	0	1	1	1	1	DHHA1	domain
tRNA_SAD	PF07973.14	gi|257052998|ref|YP_003130831.1|	-	1.4e-12	47.5	1.3	2.7e-12	46.6	1.3	1.5	1	0	0	1	1	1	1	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
AIF-MLS	PF14962.6	gi|257052998|ref|YP_003130831.1|	-	0.91	9.5	6.4	3.3	7.6	6.4	2.0	1	0	0	1	1	1	0	Mitochondria	Localisation	Sequence
DICT	PF10069.9	gi|257052999|ref|YP_003130832.1|	-	2.4e-07	30.6	0.0	4.5e-07	29.7	0.0	1.4	1	0	0	1	1	1	1	Sensory	domain	in	DIguanylate	Cyclases	and	Two-component	system
Abhydrolase_1	PF00561.20	gi|257053000|ref|YP_003130833.1|	-	2.1e-17	63.6	0.1	2.8e-09	37.0	0.2	2.1	2	0	0	2	2	2	2	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.8	gi|257053000|ref|YP_003130833.1|	-	5.1e-16	58.7	0.1	6.8e-16	58.3	0.1	1.1	1	0	0	1	1	1	1	Serine	aminopeptidase,	S33
Abhydrolase_6	PF12697.7	gi|257053000|ref|YP_003130833.1|	-	8.5e-14	52.7	15.7	1e-13	52.4	15.7	1.0	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_5	PF12695.7	gi|257053000|ref|YP_003130833.1|	-	4e-06	26.7	0.0	0.0069	16.2	0.0	2.1	2	0	0	2	2	2	2	Alpha/beta	hydrolase	family
FSH1	PF03959.13	gi|257053000|ref|YP_003130833.1|	-	0.0012	18.5	0.0	0.0017	18.1	0.0	1.2	1	0	0	1	1	1	1	Serine	hydrolase	(FSH1)
Abhydrolase_4	PF08386.10	gi|257053000|ref|YP_003130833.1|	-	0.0064	16.6	0.0	0.012	15.8	0.0	1.4	1	0	0	1	1	1	1	TAP-like	protein
Peptidase_S9	PF00326.21	gi|257053000|ref|YP_003130833.1|	-	0.01	15.4	0.2	0.023	14.2	0.0	1.7	2	0	0	2	2	2	1	Prolyl	oligopeptidase	family
DLH	PF01738.18	gi|257053000|ref|YP_003130833.1|	-	0.013	15.0	0.0	1.3	8.5	0.0	2.2	2	0	0	2	2	2	0	Dienelactone	hydrolase	family
UPF0227	PF05728.12	gi|257053000|ref|YP_003130833.1|	-	0.015	15.2	0.0	0.04	13.8	0.0	1.6	2	0	0	2	2	2	0	Uncharacterised	protein	family	(UPF0227)
BAAT_C	PF08840.11	gi|257053000|ref|YP_003130833.1|	-	0.14	12.1	0.0	0.41	10.5	0.0	1.8	1	1	0	1	1	1	0	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
HalOD1	PF18545.1	gi|257053000|ref|YP_003130833.1|	-	0.52	10.6	2.9	16	5.9	0.2	3.4	4	0	0	4	4	4	0	Halobacterial	output	domain	1
PHP	PF02811.19	gi|257053002|ref|YP_003130835.1|	-	3.1e-06	27.6	0.0	3.2e-06	27.5	0.0	1.2	1	0	0	1	1	1	1	PHP	domain
PHP_C	PF13263.6	gi|257053002|ref|YP_003130835.1|	-	0.048	13.4	0.2	0.13	12.0	0.2	1.7	1	0	0	1	1	1	0	PHP-associated
VirionAssem_T7	PF11653.8	gi|257053003|ref|YP_003130836.1|	-	0.1	13.1	0.4	0.17	12.4	0.4	1.3	1	0	0	1	1	1	0	Bacteriophage	T7	virion	assembly	protein
DUF2583	PF10762.9	gi|257053003|ref|YP_003130836.1|	-	3.8	8.0	10.5	0.36	11.3	3.4	2.4	1	1	3	4	4	4	0	Protein	of	unknown	function	(DUF2583)
HTH_5	PF01022.20	gi|257053004|ref|YP_003130837.1|	-	8.5e-07	28.8	0.0	1.4e-06	28.0	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.6	gi|257053004|ref|YP_003130837.1|	-	1.7e-06	27.5	0.0	3.3e-06	26.6	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.19	gi|257053004|ref|YP_003130837.1|	-	2.2e-06	27.5	0.0	4.1e-06	26.6	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|257053004|ref|YP_003130837.1|	-	3.8e-05	23.5	0.0	6.6e-05	22.7	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|257053004|ref|YP_003130837.1|	-	6.6e-05	22.9	0.2	0.00013	22.0	0.2	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|257053004|ref|YP_003130837.1|	-	8.2e-05	22.3	0.0	0.00014	21.6	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR	PF01047.22	gi|257053004|ref|YP_003130837.1|	-	0.00047	20.0	0.0	0.00079	19.3	0.0	1.4	1	0	0	1	1	1	1	MarR	family
TFIIE_alpha	PF02002.17	gi|257053004|ref|YP_003130837.1|	-	0.00065	19.5	0.0	0.001	18.9	0.0	1.3	1	0	0	1	1	1	1	TFIIE	alpha	subunit
HTH_29	PF13551.6	gi|257053004|ref|YP_003130837.1|	-	0.017	15.1	0.0	0.03	14.3	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_Crp_2	PF13545.6	gi|257053004|ref|YP_003130837.1|	-	0.019	14.9	0.0	0.031	14.3	0.0	1.3	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
Desulfoferrod_N	PF06397.12	gi|257053004|ref|YP_003130837.1|	-	0.028	14.0	4.1	0.083	12.5	4.1	1.9	1	1	0	1	1	1	0	Desulfoferrodoxin,	N-terminal	domain
HTH_CodY	PF08222.11	gi|257053004|ref|YP_003130837.1|	-	0.074	12.6	0.0	0.12	12.0	0.0	1.2	1	0	0	1	1	1	0	CodY	helix-turn-helix	domain
HTH_36	PF13730.6	gi|257053004|ref|YP_003130837.1|	-	0.15	12.0	0.0	0.26	11.3	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
Rrf2	PF02082.20	gi|257053004|ref|YP_003130837.1|	-	0.2	12.0	0.0	0.35	11.3	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
PIN	PF01850.21	gi|257053005|ref|YP_003130838.1|	-	2.1e-11	44.4	0.0	2.6e-11	44.1	0.0	1.1	1	0	0	1	1	1	1	PIN	domain
VAPB_antitox	PF02697.14	gi|257053006|ref|YP_003130839.1|	-	2.5e-07	31.4	0.6	3.7e-07	30.8	0.6	1.3	1	1	0	1	1	1	1	Putative	antitoxin
DUF1651	PF07864.11	gi|257053007|ref|YP_003130840.1|	-	0.095	13.1	0.0	0.16	12.3	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1651)
BofA	PF07441.11	gi|257053008|ref|YP_003130841.1|	-	3.2e-09	36.9	18.1	4.7e-09	36.3	18.1	1.2	1	0	0	1	1	1	1	SigmaK-factor	processing	regulatory	protein	BofA
TAT_signal	PF10518.9	gi|257053009|ref|YP_003130842.1|	-	0.032	14.1	0.9	0.045	13.6	0.9	1.2	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
CitMHS	PF03600.16	gi|257053010|ref|YP_003130843.1|	-	4.6e-57	193.5	9.8	4.6e-57	193.5	9.8	1.6	1	1	1	2	2	2	2	Citrate	transporter
TrkA_C	PF02080.21	gi|257053010|ref|YP_003130843.1|	-	6.6e-20	70.7	6.1	8.5e-13	47.9	0.3	2.5	2	0	0	2	2	2	2	TrkA-C	domain
Na_sulph_symp	PF00939.19	gi|257053010|ref|YP_003130843.1|	-	7.3e-19	68.2	38.1	5.7e-13	48.7	15.9	3.2	2	1	1	3	3	3	3	Sodium:sulfate	symporter	transmembrane	region
AAA_3	PF07726.11	gi|257053011|ref|YP_003130844.1|	-	9.6e-65	216.3	0.1	1.6e-64	215.6	0.1	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_2	PF17863.1	gi|257053011|ref|YP_003130844.1|	-	3.1e-20	71.8	1.5	5.8e-20	70.9	1.5	1.5	1	0	0	1	1	1	1	AAA	lid	domain
AAA_5	PF07728.14	gi|257053011|ref|YP_003130844.1|	-	1.1e-16	61.0	0.0	3e-16	59.7	0.0	1.7	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.29	gi|257053011|ref|YP_003130844.1|	-	9.7e-07	29.3	0.0	1.2e-05	25.7	0.0	2.4	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.26	gi|257053011|ref|YP_003130844.1|	-	9.7e-05	22.1	0.0	0.0081	15.9	0.0	2.1	2	0	0	2	2	2	1	Sigma-54	interaction	domain
MCM	PF00493.23	gi|257053011|ref|YP_003130844.1|	-	0.025	13.7	0.0	0.033	13.3	0.0	1.3	1	0	0	1	1	1	0	MCM	P-loop	domain
Mg_chelatase	PF01078.21	gi|257053011|ref|YP_003130844.1|	-	0.061	12.7	0.1	3.4	7.0	0.0	2.2	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
ATPase	PF06745.13	gi|257053011|ref|YP_003130844.1|	-	0.09	12.1	0.0	0.16	11.3	0.0	1.3	1	0	0	1	1	1	0	KaiC
RuvB_N	PF05496.12	gi|257053011|ref|YP_003130844.1|	-	0.099	12.4	0.0	1.2	8.9	0.0	2.2	1	1	0	1	1	1	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
DUF58	PF01882.18	gi|257053013|ref|YP_003130846.1|	-	9.4e-17	61.1	0.6	9.4e-17	61.1	0.6	1.8	2	0	0	2	2	2	1	Protein	of	unknown	function	DUF58
NPCBM_assoc	PF10633.9	gi|257053013|ref|YP_003130846.1|	-	0.0011	19.1	0.6	0.0037	17.5	0.1	2.1	2	0	0	2	2	2	1	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
DUF11	PF01345.18	gi|257053013|ref|YP_003130846.1|	-	0.003	17.8	0.7	0.003	17.8	0.7	2.1	2	0	0	2	2	2	1	Domain	of	unknown	function	DUF11
IgGFc_binding	PF17517.2	gi|257053013|ref|YP_003130846.1|	-	0.032	13.5	0.0	0.078	12.3	0.0	1.5	1	1	0	1	1	1	0	IgGFc	binding	protein
Toxin_4	PF00706.17	gi|257053013|ref|YP_003130846.1|	-	0.39	11.2	2.3	24	5.5	0.9	2.6	2	0	0	2	2	2	0	Anenome	neurotoxin
DUF4129	PF13559.6	gi|257053015|ref|YP_003130848.1|	-	1.5e-06	28.3	4.0	1.5e-06	28.3	4.0	2.4	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4129)
CarboxypepD_reg	PF13620.6	gi|257053015|ref|YP_003130848.1|	-	0.0036	17.5	15.7	0.1	12.9	2.3	3.6	3	0	0	3	3	3	2	Carboxypeptidase	regulatory-like	domain
CarbopepD_reg_2	PF13715.6	gi|257053015|ref|YP_003130848.1|	-	0.55	10.3	3.6	2.8	8.0	0.2	3.1	3	1	0	3	3	3	0	CarboxypepD_reg-like	domain
Bactofilin	PF04519.13	gi|257053015|ref|YP_003130848.1|	-	1.1	9.6	5.0	6.5	7.1	0.6	2.5	2	0	0	2	2	2	0	Polymer-forming	cytoskeletal
Abhydrolase_8	PF06259.12	gi|257053015|ref|YP_003130848.1|	-	4.8	6.8	9.0	1.3	8.6	1.6	2.9	3	0	0	3	3	3	0	Alpha/beta	hydrolase
Peptidase_M48	PF01435.18	gi|257053016|ref|YP_003130849.1|	-	2.3e-26	92.8	0.0	3.8e-26	92.1	0.0	1.3	1	0	0	1	1	1	1	Peptidase	family	M48
Peptidase_M56	PF05569.11	gi|257053016|ref|YP_003130849.1|	-	2.6e-05	23.6	3.5	0.00029	20.2	0.0	3.0	3	0	0	3	3	3	1	BlaR1	peptidase	M56
SprT-like	PF10263.9	gi|257053016|ref|YP_003130849.1|	-	0.00017	21.4	0.0	0.00028	20.7	0.0	1.3	1	0	0	1	1	1	1	SprT-like	family
DUF2201_N	PF13203.6	gi|257053016|ref|YP_003130849.1|	-	0.053	13.1	0.0	0.1	12.2	0.0	1.4	1	0	0	1	1	1	0	Putative	metallopeptidase	domain
RSN1_7TM	PF02714.15	gi|257053016|ref|YP_003130849.1|	-	0.097	12.0	0.1	0.097	12.0	0.1	2.0	2	0	0	2	2	2	0	Calcium-dependent	channel,	7TM	region,	putative	phosphate
BSP	PF04450.12	gi|257053016|ref|YP_003130849.1|	-	0.15	11.8	0.0	0.22	11.3	0.0	1.2	1	0	0	1	1	1	0	Peptidase	of	plants	and	bacteria
Polbeta	PF18765.1	gi|257053018|ref|YP_003130851.1|	-	1.2e-12	47.7	0.0	1.7e-12	47.2	0.0	1.2	1	0	0	1	1	1	1	Polymerase	beta,	Nucleotidyltransferase
NTP_transf_2	PF01909.23	gi|257053018|ref|YP_003130851.1|	-	3.6e-08	33.6	0.2	5.2e-08	33.1	0.2	1.4	1	1	0	1	1	1	1	Nucleotidyltransferase	domain
TetR_C_33	PF13305.6	gi|257053018|ref|YP_003130851.1|	-	0.016	15.9	0.2	0.028	15.2	0.2	1.6	1	1	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
DUF86	PF01934.17	gi|257053019|ref|YP_003130852.1|	-	4.9e-19	68.4	0.0	6.2e-19	68.0	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF86
DUF5301	PF17225.3	gi|257053019|ref|YP_003130852.1|	-	0.085	13.3	0.0	0.13	12.7	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5300)
DEAD	PF00270.29	gi|257053020|ref|YP_003130853.1|	-	1.6e-17	63.8	0.0	2.8e-17	63.0	0.0	1.4	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|257053020|ref|YP_003130853.1|	-	1.4e-12	47.9	0.0	3.5e-12	46.7	0.0	1.7	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|257053020|ref|YP_003130853.1|	-	3.6e-08	33.6	0.0	6e-08	32.9	0.0	1.3	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
PetG	PF02529.15	gi|257053021|ref|YP_003130854.1|	-	0.0014	18.5	3.0	0.031	14.1	0.6	2.2	2	0	0	2	2	2	2	Cytochrome	B6-F	complex	subunit	5
DUF2207	PF09972.9	gi|257053021|ref|YP_003130854.1|	-	0.17	10.7	2.3	0.18	10.5	2.3	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
OppC_N	PF12911.7	gi|257053021|ref|YP_003130854.1|	-	0.52	10.3	2.3	0.98	9.4	0.1	2.0	2	0	0	2	2	2	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
Tad	PF13400.6	gi|257053021|ref|YP_003130854.1|	-	5.6	7.3	7.8	11	6.4	2.9	2.1	1	1	1	2	2	2	0	Putative	Flp	pilus-assembly	TadE/G-like
Peptidase_M22	PF00814.25	gi|257053022|ref|YP_003130855.1|	-	3.4e-78	263.1	0.0	4.8e-78	262.6	0.0	1.1	1	0	0	1	1	1	1	Glycoprotease	family
APH	PF01636.23	gi|257053022|ref|YP_003130855.1|	-	5.5e-06	26.5	5.3	0.0074	16.2	0.6	2.5	1	1	1	2	2	2	2	Phosphotransferase	enzyme	family
RIO1	PF01163.22	gi|257053022|ref|YP_003130855.1|	-	0.0031	17.1	0.0	0.0067	16.0	0.0	1.5	1	0	0	1	1	1	1	RIO1	family
Kdo	PF06293.14	gi|257053022|ref|YP_003130855.1|	-	0.013	14.9	0.2	0.035	13.4	0.2	1.7	1	1	0	1	1	1	0	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
Pkinase	PF00069.25	gi|257053022|ref|YP_003130855.1|	-	0.029	13.7	0.0	0.042	13.2	0.0	1.2	1	0	0	1	1	1	0	Protein	kinase	domain
ROK	PF00480.20	gi|257053022|ref|YP_003130855.1|	-	0.087	12.3	0.0	0.18	11.2	0.0	1.5	1	0	0	1	1	1	0	ROK	family
Pkinase_Tyr	PF07714.17	gi|257053022|ref|YP_003130855.1|	-	0.12	11.7	0.0	0.17	11.1	0.0	1.2	1	0	0	1	1	1	0	Protein	tyrosine	kinase
Ribosomal_S27	PF01599.19	gi|257053023|ref|YP_003130856.1|	-	1.5e-08	34.7	5.6	1.6e-08	34.6	5.2	1.4	1	1	0	1	1	1	1	Ribosomal	protein	S27a
RNA_POL_M_15KD	PF02150.16	gi|257053023|ref|YP_003130856.1|	-	0.0052	16.6	0.6	0.0077	16.1	0.6	1.3	1	0	0	1	1	1	1	RNA	polymerases	M/15	Kd	subunit
zinc_ribbon_9	PF14369.6	gi|257053023|ref|YP_003130856.1|	-	0.038	14.3	0.2	0.038	14.3	0.2	1.8	1	1	1	2	2	2	0	zinc-ribbon
Fer4_6	PF12837.7	gi|257053023|ref|YP_003130856.1|	-	0.21	11.7	3.9	2.4	8.4	0.4	2.1	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Nudix_N_2	PF14803.6	gi|257053023|ref|YP_003130856.1|	-	0.21	11.5	6.0	1.1	9.2	0.6	2.1	2	0	0	2	2	2	0	Nudix	N-terminal
Ribosomal_S24e	PF01282.19	gi|257053024|ref|YP_003130857.1|	-	1.5e-26	92.1	0.1	1.9e-26	91.8	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S24e
DNA_pol3_delta2	PF13177.6	gi|257053025|ref|YP_003130858.1|	-	4.3e-11	42.9	0.0	8e-11	42.0	0.0	1.4	1	1	0	1	1	1	1	DNA	polymerase	III,	delta	subunit
Rep_fac_C	PF08542.11	gi|257053025|ref|YP_003130858.1|	-	7.7e-11	42.3	0.0	2.2e-10	40.8	0.0	1.8	1	0	0	1	1	1	1	Replication	factor	C	C-terminal	domain
AAA_16	PF13191.6	gi|257053025|ref|YP_003130858.1|	-	2.2e-09	37.9	0.5	4.2e-08	33.8	0.0	2.3	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.29	gi|257053025|ref|YP_003130858.1|	-	1e-08	35.7	0.0	2.2e-08	34.6	0.0	1.6	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.6	gi|257053025|ref|YP_003130858.1|	-	2.6e-08	34.2	0.0	8.2e-08	32.6	0.0	1.8	2	1	0	2	2	2	1	AAA	domain
Sigma54_activat	PF00158.26	gi|257053025|ref|YP_003130858.1|	-	0.00016	21.4	0.0	0.0098	15.6	0.0	2.3	2	0	0	2	2	2	1	Sigma-54	interaction	domain
AAA_24	PF13479.6	gi|257053025|ref|YP_003130858.1|	-	0.00038	20.3	0.0	0.0006	19.6	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
DUF2075	PF09848.9	gi|257053025|ref|YP_003130858.1|	-	0.0018	17.6	0.0	0.0028	17.0	0.0	1.3	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2075)
AAA_30	PF13604.6	gi|257053025|ref|YP_003130858.1|	-	0.0022	17.7	0.5	0.0098	15.6	0.1	2.2	2	1	0	2	2	2	1	AAA	domain
AAA_14	PF13173.6	gi|257053025|ref|YP_003130858.1|	-	0.0024	17.9	0.0	0.0069	16.4	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
T2SSE	PF00437.20	gi|257053025|ref|YP_003130858.1|	-	0.0026	16.9	0.0	0.057	12.5	0.0	2.6	3	0	0	3	3	3	1	Type	II/IV	secretion	system	protein
NACHT	PF05729.12	gi|257053025|ref|YP_003130858.1|	-	0.0037	17.2	0.0	0.0069	16.3	0.0	1.5	1	0	0	1	1	1	1	NACHT	domain
Viral_helicase1	PF01443.18	gi|257053025|ref|YP_003130858.1|	-	0.014	15.1	0.0	0.022	14.5	0.0	1.3	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
TniB	PF05621.11	gi|257053025|ref|YP_003130858.1|	-	0.015	14.7	0.0	0.044	13.2	0.0	1.7	1	0	0	1	1	1	0	Bacterial	TniB	protein
AAA_assoc_2	PF16193.5	gi|257053025|ref|YP_003130858.1|	-	0.025	14.9	0.6	0.24	11.8	0.5	2.6	1	1	0	1	1	1	0	AAA	C-terminal	domain
IstB_IS21	PF01695.17	gi|257053025|ref|YP_003130858.1|	-	0.04	13.6	0.0	0.18	11.5	0.0	2.0	1	1	1	2	2	2	0	IstB-like	ATP	binding	protein
AAA_33	PF13671.6	gi|257053025|ref|YP_003130858.1|	-	0.043	14.0	0.0	0.1	12.8	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
Zeta_toxin	PF06414.12	gi|257053025|ref|YP_003130858.1|	-	0.047	13.0	0.2	0.18	11.1	0.1	1.9	1	1	0	1	1	1	0	Zeta	toxin
FtsK_SpoIIIE	PF01580.18	gi|257053025|ref|YP_003130858.1|	-	0.047	13.0	0.0	0.25	10.6	0.0	2.1	3	0	0	3	3	3	0	FtsK/SpoIIIE	family
AAA_11	PF13086.6	gi|257053025|ref|YP_003130858.1|	-	0.05	13.4	0.0	0.11	12.3	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_18	PF13238.6	gi|257053025|ref|YP_003130858.1|	-	0.055	14.0	0.0	0.46	11.0	0.0	2.3	1	1	0	2	2	2	0	AAA	domain
DEAD	PF00270.29	gi|257053025|ref|YP_003130858.1|	-	0.072	12.9	0.0	15	5.3	0.0	2.3	2	0	0	2	2	2	0	DEAD/DEAH	box	helicase
TsaE	PF02367.17	gi|257053025|ref|YP_003130858.1|	-	0.091	12.8	0.0	0.18	11.8	0.0	1.5	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
N6_Mtase	PF02384.16	gi|257053025|ref|YP_003130858.1|	-	0.11	11.7	0.0	0.16	11.2	0.0	1.2	1	0	0	1	1	1	0	N-6	DNA	Methylase
TcpQ	PF10671.9	gi|257053025|ref|YP_003130858.1|	-	0.12	12.5	0.1	3.3	7.9	0.1	2.5	2	0	0	2	2	2	0	Toxin	co-regulated	pilus	biosynthesis	protein	Q
Bac_DnaA	PF00308.18	gi|257053025|ref|YP_003130858.1|	-	0.13	12.1	0.0	11	5.7	0.0	2.6	1	1	2	3	3	3	0	Bacterial	dnaA	protein
ATP_bind_1	PF03029.17	gi|257053025|ref|YP_003130858.1|	-	0.13	12.0	0.1	2.9	7.6	0.0	2.4	1	1	1	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
ResIII	PF04851.15	gi|257053025|ref|YP_003130858.1|	-	0.15	12.1	0.0	0.58	10.1	0.0	1.9	2	1	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
Rad17	PF03215.15	gi|257053025|ref|YP_003130858.1|	-	0.15	11.9	0.0	0.28	11.1	0.0	1.5	1	1	0	1	1	1	0	Rad17	P-loop	domain
ABC_tran	PF00005.27	gi|257053025|ref|YP_003130858.1|	-	0.15	12.5	0.0	2	8.9	0.0	2.3	2	1	0	2	2	2	0	ABC	transporter
AAA_6	PF12774.7	gi|257053025|ref|YP_003130858.1|	-	0.2	10.6	0.0	0.35	9.8	0.0	1.3	1	0	0	1	1	1	0	Hydrolytic	ATP	binding	site	of	dynein	motor	region
T2SSF	PF00482.23	gi|257053025|ref|YP_003130858.1|	-	1.5	8.8	3.9	5.4	7.0	0.2	3.0	3	0	0	3	3	3	0	Type	II	secretion	system	(T2SS),	protein	F
MacB_PCD	PF12704.7	gi|257053026|ref|YP_003130859.1|	-	5.7e-18	66.0	10.4	5.7e-18	66.0	10.4	2.1	3	0	0	3	3	3	1	MacB-like	periplasmic	core	domain
FtsX	PF02687.21	gi|257053026|ref|YP_003130859.1|	-	9.8e-16	58.0	3.0	9.8e-16	58.0	3.0	3.1	3	0	0	3	3	3	1	FtsX-like	permease	family
Phage_holin_2_1	PF04971.12	gi|257053026|ref|YP_003130859.1|	-	4.1	7.5	5.8	2.7	8.1	0.5	2.9	2	0	0	2	2	2	0	Bacteriophage	P21	holin	S
ABC_tran	PF00005.27	gi|257053027|ref|YP_003130860.1|	-	2.8e-35	121.8	0.0	3.7e-35	121.4	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|257053027|ref|YP_003130860.1|	-	1.5e-06	28.2	2.5	0.0051	16.7	0.7	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|257053027|ref|YP_003130860.1|	-	2.8e-06	26.9	0.0	0.057	12.8	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|257053027|ref|YP_003130860.1|	-	3.8e-05	23.3	0.9	6.6e-05	22.6	0.9	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|257053027|ref|YP_003130860.1|	-	0.00063	20.2	0.3	0.0011	19.4	0.3	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|257053027|ref|YP_003130860.1|	-	0.00094	19.1	0.3	0.0017	18.3	0.3	1.4	1	0	0	1	1	1	1	RsgA	GTPase
AAA_23	PF13476.6	gi|257053027|ref|YP_003130860.1|	-	0.0022	18.5	0.3	0.0032	18.0	0.3	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|257053027|ref|YP_003130860.1|	-	0.0054	16.5	1.0	0.016	14.9	1.0	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|257053027|ref|YP_003130860.1|	-	0.011	16.0	0.6	0.026	14.8	0.2	1.7	2	0	0	2	2	2	0	AAA	domain
MMR_HSR1	PF01926.23	gi|257053027|ref|YP_003130860.1|	-	0.022	14.8	0.3	0.088	12.9	0.1	2.1	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
DUF3987	PF13148.6	gi|257053027|ref|YP_003130860.1|	-	0.031	13.3	0.0	0.052	12.6	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3987)
AAA_25	PF13481.6	gi|257053027|ref|YP_003130860.1|	-	0.033	13.8	0.1	0.033	13.8	0.1	2.0	2	1	0	2	2	2	0	AAA	domain
NACHT	PF05729.12	gi|257053027|ref|YP_003130860.1|	-	0.12	12.3	0.1	0.55	10.1	0.1	1.9	2	0	0	2	2	2	0	NACHT	domain
cobW	PF02492.19	gi|257053027|ref|YP_003130860.1|	-	0.15	11.7	0.5	0.28	10.8	0.5	1.5	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_33	PF13671.6	gi|257053027|ref|YP_003130860.1|	-	0.16	12.1	1.5	0.34	11.1	1.5	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_15	PF13175.6	gi|257053027|ref|YP_003130860.1|	-	0.18	11.5	0.1	0.25	11.0	0.1	1.1	1	0	0	1	1	1	0	AAA	ATPase	domain
ABC_ATPase	PF09818.9	gi|257053027|ref|YP_003130860.1|	-	0.41	9.4	1.7	1.2	7.8	0.4	2.0	2	0	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
AAA_28	PF13521.6	gi|257053027|ref|YP_003130860.1|	-	0.8	9.9	3.7	0.54	10.5	0.6	2.0	2	1	0	2	2	2	0	AAA	domain
Peripla_BP_2	PF01497.18	gi|257053028|ref|YP_003130861.1|	-	4.3e-16	59.2	0.0	6.1e-16	58.7	0.0	1.2	1	0	0	1	1	1	1	Periplasmic	binding	protein
Glyco_hydro_11	PF00457.17	gi|257053029|ref|YP_003130862.1|	-	6.6e-77	257.2	16.6	6.6e-77	257.2	16.6	2.6	3	0	0	3	3	3	1	Glycosyl	hydrolases	family	11
CBM_6	PF03422.15	gi|257053029|ref|YP_003130862.1|	-	3.4e-20	72.6	7.2	3.4e-20	72.6	7.2	3.9	3	3	1	4	4	4	1	Carbohydrate	binding	module	(family	6)
DUF5010_C	PF18099.1	gi|257053029|ref|YP_003130862.1|	-	3.4e-11	43.3	0.9	9.9e-11	41.8	0.9	1.8	1	0	0	1	1	1	1	DUF5010	C-terminal	domain
PKD	PF00801.20	gi|257053029|ref|YP_003130862.1|	-	3.9e-07	29.8	2.0	3.9e-07	29.8	2.0	3.2	2	1	1	3	3	3	1	PKD	domain
CBM_35	PF16990.5	gi|257053029|ref|YP_003130862.1|	-	0.00011	22.4	2.6	0.00011	22.4	2.6	2.4	3	0	0	3	3	3	1	Carbohydrate	binding	module	(family	35)
TAT_signal	PF10518.9	gi|257053029|ref|YP_003130862.1|	-	0.0037	17.1	0.2	0.0037	17.1	0.2	3.3	3	0	0	3	3	3	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Cadherin	PF00028.17	gi|257053029|ref|YP_003130862.1|	-	0.063	13.7	0.1	0.61	10.6	0.0	2.7	3	0	0	3	3	3	0	Cadherin	domain
Wzt_C	PF14524.6	gi|257053029|ref|YP_003130862.1|	-	0.13	12.2	0.7	1.6	8.8	0.1	2.5	2	0	0	2	2	2	0	Wzt	C-terminal	domain
DUF5011	PF16403.5	gi|257053029|ref|YP_003130862.1|	-	0.24	11.6	4.7	1.2	9.3	0.6	3.3	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF5011)
Glyco_hydro_11	PF00457.17	gi|257053030|ref|YP_003130863.1|	-	1.4e-74	249.6	17.7	1.4e-74	249.6	17.7	2.6	2	1	1	3	3	3	1	Glycosyl	hydrolases	family	11
RicinB_lectin_2	PF14200.6	gi|257053030|ref|YP_003130863.1|	-	1.1e-35	122.2	28.0	4.1e-25	88.3	7.9	3.8	3	1	1	4	4	4	2	Ricin-type	beta-trefoil	lectin	domain-like
Ricin_B_lectin	PF00652.22	gi|257053030|ref|YP_003130863.1|	-	2e-21	76.5	10.2	6.9e-12	45.7	1.0	2.8	2	1	1	3	3	3	2	Ricin-type	beta-trefoil	lectin	domain
TAT_signal	PF10518.9	gi|257053030|ref|YP_003130863.1|	-	0.031	14.1	1.8	0.031	14.1	1.8	2.5	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
HTH_ParB	PF17762.1	gi|257053031|ref|YP_003130864.1|	-	0.11	12.4	0.0	0.18	11.6	0.0	1.4	1	0	0	1	1	1	0	HTH	domain	found	in	ParB	protein
LDcluster4	PF18306.1	gi|257053033|ref|YP_003130866.1|	-	6.7e-41	139.5	2.8	7.5e-41	139.3	2.8	1.0	1	0	0	1	1	1	1	SLOG	cluster4	family
Lysine_decarbox	PF03641.14	gi|257053033|ref|YP_003130866.1|	-	4.9e-06	26.7	0.2	8.6e-06	25.9	0.1	1.5	1	1	0	1	1	1	1	Possible	lysine	decarboxylase
DNA_processg_A	PF02481.15	gi|257053033|ref|YP_003130866.1|	-	0.00027	20.3	0.6	0.0049	16.1	0.2	2.0	1	1	1	2	2	2	1	DNA	recombination-mediator	protein	A
AA_kinase	PF00696.28	gi|257053033|ref|YP_003130866.1|	-	0.019	14.6	0.3	0.021	14.5	0.3	1.1	1	0	0	1	1	1	0	Amino	acid	kinase	family
Cupin_2	PF07883.11	gi|257053034|ref|YP_003130867.1|	-	4.3e-13	48.8	0.0	5.4e-13	48.5	0.0	1.2	1	0	0	1	1	1	1	Cupin	domain
AraC_binding	PF02311.19	gi|257053034|ref|YP_003130867.1|	-	3e-09	36.9	0.0	3.6e-09	36.6	0.0	1.1	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
AraC_binding_2	PF14525.6	gi|257053034|ref|YP_003130867.1|	-	0.00096	18.9	0.1	0.0015	18.2	0.0	1.3	1	1	0	1	1	1	1	AraC-binding-like	domain
Cupin_3	PF05899.12	gi|257053034|ref|YP_003130867.1|	-	0.0015	18.2	0.0	0.002	17.8	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF861)
MannoseP_isomer	PF01050.18	gi|257053034|ref|YP_003130867.1|	-	0.0016	18.4	0.0	0.002	18.0	0.0	1.3	1	0	0	1	1	1	1	Mannose-6-phosphate	isomerase
Ppnp	PF06865.11	gi|257053034|ref|YP_003130867.1|	-	0.0039	17.6	0.0	0.0053	17.1	0.0	1.1	1	0	0	1	1	1	1	Pyrimidine/purine	nucleoside	phosphorylase
Cupin_6	PF12852.7	gi|257053034|ref|YP_003130867.1|	-	0.0054	16.5	0.0	0.0063	16.2	0.0	1.2	1	0	0	1	1	1	1	Cupin
AraC_N	PF06719.13	gi|257053034|ref|YP_003130867.1|	-	0.0078	15.9	0.0	0.01	15.5	0.0	1.2	1	0	0	1	1	1	1	AraC-type	transcriptional	regulator	N-terminus
Lyx_isomer	PF07385.12	gi|257053034|ref|YP_003130867.1|	-	0.015	14.6	0.0	0.018	14.3	0.0	1.1	1	0	0	1	1	1	0	D-lyxose	isomerase
DUF2917	PF11142.8	gi|257053034|ref|YP_003130867.1|	-	0.037	13.4	0.0	0.069	12.5	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2917)
KduI	PF04962.12	gi|257053034|ref|YP_003130867.1|	-	0.059	12.7	0.0	0.066	12.5	0.0	1.1	1	0	0	1	1	1	0	KduI/IolB	family
HutD	PF05962.11	gi|257053034|ref|YP_003130867.1|	-	0.11	12.5	0.0	0.13	12.3	0.0	1.1	1	0	0	1	1	1	0	HutD
EutQ	PF06249.12	gi|257053034|ref|YP_003130867.1|	-	0.15	11.8	0.0	0.17	11.7	0.0	1.2	1	0	0	1	1	1	0	Ethanolamine	utilisation	protein	EutQ
Cupin_1	PF00190.22	gi|257053034|ref|YP_003130867.1|	-	0.18	11.4	0.0	0.22	11.1	0.0	1.2	1	0	0	1	1	1	0	Cupin
Methyltransf_25	PF13649.6	gi|257053035|ref|YP_003130868.1|	-	1.6e-13	51.2	0.0	2.7e-13	50.4	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|257053035|ref|YP_003130868.1|	-	8.3e-13	48.8	0.0	1.3e-12	48.2	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|257053035|ref|YP_003130868.1|	-	2.5e-10	40.4	0.0	3.8e-10	39.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|257053035|ref|YP_003130868.1|	-	2.5e-08	33.9	0.0	2.8e-08	33.7	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
MetW	PF07021.12	gi|257053035|ref|YP_003130868.1|	-	1.5e-07	31.2	0.0	2.4e-07	30.5	0.0	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Methyltransf_12	PF08242.12	gi|257053035|ref|YP_003130868.1|	-	2.9e-07	31.1	0.0	5.1e-07	30.3	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_9	PF08003.11	gi|257053035|ref|YP_003130868.1|	-	0.00034	19.7	0.0	0.00045	19.3	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
TehB	PF03848.14	gi|257053035|ref|YP_003130868.1|	-	0.019	14.4	0.0	0.024	14.0	0.0	1.3	1	1	0	1	1	1	0	Tellurite	resistance	protein	TehB
DUF938	PF06080.12	gi|257053035|ref|YP_003130868.1|	-	0.042	13.6	0.0	0.074	12.8	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF938)
Methyltransf_17	PF12692.7	gi|257053035|ref|YP_003130868.1|	-	0.05	13.6	0.0	0.067	13.2	0.0	1.3	1	0	0	1	1	1	0	S-adenosyl-L-methionine	methyltransferase
Pox_MCEL	PF03291.16	gi|257053035|ref|YP_003130868.1|	-	0.07	12.2	0.0	0.088	11.9	0.0	1.1	1	0	0	1	1	1	0	mRNA	capping	enzyme
Methyltransf_33	PF10017.9	gi|257053035|ref|YP_003130868.1|	-	0.13	11.4	0.0	0.17	11.0	0.0	1.1	1	0	0	1	1	1	0	Histidine-specific	methyltransferase,	SAM-dependent
Methyltransf_PK	PF05891.12	gi|257053035|ref|YP_003130868.1|	-	0.15	11.6	0.0	0.17	11.4	0.0	1.1	1	0	0	1	1	1	0	AdoMet	dependent	proline	di-methyltransferase
Csm4_C	PF17953.1	gi|257053036|ref|YP_003130869.1|	-	0.021	14.7	0.0	0.029	14.2	0.0	1.2	1	0	0	1	1	1	0	CRISPR	Csm4	C-terminal	domain
ATPgrasp_TupA	PF14305.6	gi|257053036|ref|YP_003130869.1|	-	0.12	12.1	0.0	0.16	11.7	0.0	1.2	1	0	0	1	1	1	0	TupA-like	ATPgrasp
Aminotran_3	PF00202.21	gi|257053038|ref|YP_003130871.1|	-	3.1e-68	230.3	0.0	4.2e-68	229.9	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-III
Aminotran_1_2	PF00155.21	gi|257053038|ref|YP_003130871.1|	-	0.00025	20.4	0.0	0.00059	19.1	0.0	1.7	1	1	0	1	1	1	1	Aminotransferase	class	I	and	II
Neuregulin	PF02158.15	gi|257053038|ref|YP_003130871.1|	-	0.069	12.5	0.0	0.099	12.0	0.0	1.1	1	0	0	1	1	1	0	Neuregulin	intracellular	region
TPR_1	PF00515.28	gi|257053038|ref|YP_003130871.1|	-	0.076	12.9	0.3	4.4	7.3	0.7	2.3	2	0	0	2	2	2	0	Tetratricopeptide	repeat
TPR_2	PF07719.17	gi|257053038|ref|YP_003130871.1|	-	0.13	12.5	0.9	21	5.5	0.8	2.4	2	0	0	2	2	2	0	Tetratricopeptide	repeat
TrmB	PF01978.19	gi|257053039|ref|YP_003130872.1|	-	3.6e-18	65.2	0.1	5.7e-18	64.6	0.1	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|257053039|ref|YP_003130872.1|	-	6e-05	22.8	0.0	0.0001	22.0	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Rrf2	PF02082.20	gi|257053039|ref|YP_003130872.1|	-	0.0059	16.9	0.0	0.01	16.1	0.0	1.3	1	0	0	1	1	1	1	Transcriptional	regulator
MarR_2	PF12802.7	gi|257053039|ref|YP_003130872.1|	-	0.014	15.2	0.0	0.031	14.2	0.0	1.5	1	0	0	1	1	1	0	MarR	family
HTH_24	PF13412.6	gi|257053039|ref|YP_003130872.1|	-	0.084	12.4	0.0	0.16	11.6	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_43	PF09904.9	gi|257053039|ref|YP_003130872.1|	-	0.093	12.7	0.0	0.21	11.6	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn	helix
Nre_N	PF04894.12	gi|257053040|ref|YP_003130873.1|	-	4.1e-102	341.6	0.0	5e-102	341.3	0.0	1.1	1	0	0	1	1	1	1	Archaeal	Nre,	N-terminal
Nre_C	PF04895.12	gi|257053040|ref|YP_003130873.1|	-	1.5e-39	134.3	0.0	8.8e-39	131.8	0.0	2.3	3	0	0	3	3	3	1	Archaeal	Nre,	C-terminal
Peptidase_M50	PF02163.22	gi|257053041|ref|YP_003130874.1|	-	4.6e-23	81.8	0.0	9.3e-22	77.5	0.0	2.1	1	1	0	1	1	1	1	Peptidase	family	M50
PDZ_2	PF13180.6	gi|257053041|ref|YP_003130874.1|	-	7.1e-22	77.5	4.2	1.5e-08	34.8	0.0	3.3	1	1	1	3	3	3	3	PDZ	domain
PDZ_6	PF17820.1	gi|257053041|ref|YP_003130874.1|	-	1.3e-11	44.2	6.8	7.4e-06	25.7	0.6	3.5	3	1	0	3	3	3	2	PDZ	domain
PDZ	PF00595.24	gi|257053041|ref|YP_003130874.1|	-	5.2e-09	36.3	7.9	1.9e-05	24.9	0.1	3.6	3	1	1	4	4	4	2	PDZ	domain
Tricorn_PDZ	PF14685.6	gi|257053041|ref|YP_003130874.1|	-	1.7e-06	27.9	2.8	0.0055	16.6	0.1	3.2	3	0	0	3	3	3	2	Tricorn	protease	PDZ	domain
DUF5489	PF17592.2	gi|257053041|ref|YP_003130874.1|	-	0.04	14.4	5.7	0.082	13.4	0.0	3.5	4	0	0	4	4	4	0	Family	of	unknown	function	(DUF5489)
DUF3333	PF11812.8	gi|257053041|ref|YP_003130874.1|	-	0.068	13.4	0.2	0.15	12.3	0.2	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3333)
tRNA-synt_1f	PF01921.18	gi|257053042|ref|YP_003130875.1|	-	5.6e-97	324.9	0.0	7.6e-97	324.4	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(K)
tRNA-synt_1g	PF09334.11	gi|257053042|ref|YP_003130875.1|	-	3.4e-09	35.9	0.0	1.3e-05	24.1	0.0	2.2	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(M)
tRNA-synt_1e	PF01406.19	gi|257053042|ref|YP_003130875.1|	-	0.00019	20.9	0.0	0.0045	16.4	0.0	2.6	3	0	0	3	3	3	1	tRNA	synthetases	class	I	(C)	catalytic	domain
DUF2525	PF10733.9	gi|257053042|ref|YP_003130875.1|	-	0.066	13.5	0.9	0.23	11.8	0.9	2.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2525)
AA_kinase	PF00696.28	gi|257053043|ref|YP_003130876.1|	-	2.5e-29	102.6	3.7	4.9e-29	101.6	3.7	1.4	1	1	0	1	1	1	1	Amino	acid	kinase	family
Peptidase_M50	PF02163.22	gi|257053045|ref|YP_003130878.1|	-	1.2e-14	54.2	8.1	1.8e-07	30.7	0.2	2.3	1	1	1	2	2	2	2	Peptidase	family	M50
DUF5336	PF17270.2	gi|257053045|ref|YP_003130878.1|	-	3.6	7.2	9.9	0.087	12.5	1.2	2.6	3	0	0	3	3	3	0	Family	of	unknown	function	(DUF5336)
UPF0220	PF05255.11	gi|257053045|ref|YP_003130878.1|	-	6.2	6.3	6.2	18	4.8	0.4	3.3	3	1	1	4	4	4	0	Uncharacterised	protein	family	(UPF0220)
Sulfatase	PF00884.23	gi|257053046|ref|YP_003130879.1|	-	0.0006	19.3	0.1	0.00075	19.0	0.1	1.2	1	0	0	1	1	1	1	Sulfatase
PglZ	PF08665.12	gi|257053046|ref|YP_003130879.1|	-	0.051	13.7	0.0	0.13	12.3	0.0	1.7	2	0	0	2	2	2	0	PglZ	domain
AIRS	PF00586.24	gi|257053047|ref|YP_003130880.1|	-	8.8e-17	61.6	4.5	1.9e-16	60.5	4.5	1.6	1	0	0	1	1	1	1	AIR	synthase	related	protein,	N-terminal	domain
AIRS_C	PF02769.22	gi|257053047|ref|YP_003130880.1|	-	2.1e-11	44.2	0.1	3.2e-11	43.6	0.1	1.2	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
LPG_synthase_TM	PF03706.13	gi|257053048|ref|YP_003130881.1|	-	2.1e-33	116.2	41.7	2.4e-33	116.0	41.7	1.0	1	0	0	1	1	1	1	Lysylphosphatidylglycerol	synthase	TM	region
Ribosomal_S19e	PF01090.19	gi|257053049|ref|YP_003130882.1|	-	9.8e-50	167.8	0.0	1.1e-49	167.6	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S19e
GntR	PF00392.21	gi|257053049|ref|YP_003130882.1|	-	0.0011	18.6	0.0	0.0038	16.9	0.0	1.9	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_45	PF14947.6	gi|257053049|ref|YP_003130882.1|	-	0.036	14.0	0.0	0.58	10.2	0.0	2.1	2	0	0	2	2	2	0	Winged	helix-turn-helix
TrmB	PF01978.19	gi|257053049|ref|YP_003130882.1|	-	0.11	12.3	0.2	1.9	8.5	0.0	2.4	3	0	0	3	3	3	0	Sugar-specific	transcriptional	regulator	TrmB
dsDNA_bind	PF01984.20	gi|257053050|ref|YP_003130883.1|	-	7.5e-27	93.8	10.4	8.4e-27	93.6	10.4	1.0	1	0	0	1	1	1	1	Double-stranded	DNA-binding	domain
PCI	PF01399.27	gi|257053050|ref|YP_003130883.1|	-	0.095	13.2	0.4	0.22	12.0	0.1	1.7	1	1	1	2	2	2	0	PCI	domain
EF-1_beta_acid	PF10587.9	gi|257053050|ref|YP_003130883.1|	-	0.15	12.5	1.1	0.15	12.5	1.1	2.7	3	0	0	3	3	3	0	Eukaryotic	elongation	factor	1	beta	central	acidic	region
BIRC6	PF12356.8	gi|257053050|ref|YP_003130883.1|	-	0.39	10.1	2.7	4.8	6.6	0.6	2.1	1	1	1	2	2	2	0	Baculoviral	IAP	repeat-containing	protein	6
SurA_N_2	PF13623.6	gi|257053050|ref|YP_003130883.1|	-	0.77	9.6	5.5	0.97	9.3	5.5	1.1	1	0	0	1	1	1	0	SurA	N-terminal	domain
Asn_synthase	PF00733.21	gi|257053051|ref|YP_003130884.1|	-	6.1e-06	26.1	0.2	7.6e-06	25.8	0.2	1.2	1	0	0	1	1	1	1	Asparagine	synthase
PAPS_reduct	PF01507.19	gi|257053051|ref|YP_003130884.1|	-	0.0072	16.4	0.0	0.011	15.7	0.0	1.3	1	0	0	1	1	1	1	Phosphoadenosine	phosphosulfate	reductase	family
NAD_synthase	PF02540.17	gi|257053051|ref|YP_003130884.1|	-	0.018	14.2	0.0	0.025	13.7	0.0	1.2	1	0	0	1	1	1	0	NAD	synthase
IU_nuc_hydro	PF01156.19	gi|257053051|ref|YP_003130884.1|	-	0.02	14.5	0.1	0.023	14.2	0.1	1.1	1	0	0	1	1	1	0	Inosine-uridine	preferring	nucleoside	hydrolase
QueC	PF06508.13	gi|257053051|ref|YP_003130884.1|	-	0.027	13.9	0.0	0.042	13.4	0.0	1.3	1	0	0	1	1	1	0	Queuosine	biosynthesis	protein	QueC
Acetyltransf_3	PF13302.7	gi|257053052|ref|YP_003130885.1|	-	8.8e-17	62.1	0.1	1.2e-16	61.6	0.1	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|257053052|ref|YP_003130885.1|	-	0.00037	20.7	0.0	0.00063	20.0	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
CcdA	PF07362.12	gi|257053053|ref|YP_003130886.1|	-	0.064	13.7	0.2	0.16	12.5	0.1	1.7	1	1	0	1	1	1	0	Post-segregation	antitoxin	CcdA
CENP-B_N	PF04218.13	gi|257053053|ref|YP_003130886.1|	-	0.073	12.7	0.8	0.13	11.9	0.8	1.4	1	0	0	1	1	1	0	CENP-B	N-terminal	DNA-binding	domain
tRNA-synt_His	PF13393.6	gi|257053054|ref|YP_003130887.1|	-	1.4e-53	182.2	0.4	1.9e-53	181.7	0.4	1.1	1	0	0	1	1	1	1	Histidyl-tRNA	synthetase
HGTP_anticodon	PF03129.20	gi|257053054|ref|YP_003130887.1|	-	2.5e-13	50.0	0.1	5.2e-13	49.0	0.1	1.4	1	0	0	1	1	1	1	Anticodon	binding	domain
tRNA-synt_2b	PF00587.25	gi|257053054|ref|YP_003130887.1|	-	3.4e-11	43.4	0.0	2.4e-10	40.6	0.0	2.0	1	1	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
Flavodoxin_1	PF00258.25	gi|257053054|ref|YP_003130887.1|	-	0.04	14.1	0.5	0.37	11.0	0.0	2.4	2	0	0	2	2	2	0	Flavodoxin
Flavodoxin_5	PF12724.7	gi|257053054|ref|YP_003130887.1|	-	0.049	13.9	0.0	0.11	12.8	0.0	1.6	1	0	0	1	1	1	0	Flavodoxin	domain
CoatB	PF10389.9	gi|257053056|ref|YP_003130889.1|	-	2	8.3	5.6	5	7.0	0.7	2.1	2	0	0	2	2	2	0	Bacteriophage	coat	protein	B
HAD_2	PF13419.6	gi|257053057|ref|YP_003130890.1|	-	2.6e-10	40.7	0.0	3.6e-10	40.2	0.0	1.2	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|257053057|ref|YP_003130890.1|	-	7.3e-05	22.8	0.0	0.00016	21.7	0.0	1.6	1	0	0	1	1	1	1	HAD-hyrolase-like
HAD	PF12710.7	gi|257053057|ref|YP_003130890.1|	-	0.00039	20.9	1.1	0.00055	20.4	1.1	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|257053057|ref|YP_003130890.1|	-	0.00065	20.0	0.6	0.013	15.8	0.6	2.2	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
PQQ_3	PF13570.6	gi|257053058|ref|YP_003130891.1|	-	1.7e-76	251.0	51.6	1.4e-10	41.3	0.6	9.1	8	1	0	8	8	8	8	PQQ-like	domain
PQQ	PF01011.21	gi|257053058|ref|YP_003130891.1|	-	3.8e-60	197.1	29.6	3.7e-10	39.2	0.2	9.0	9	0	0	9	9	9	8	PQQ	enzyme	repeat
PQQ_2	PF13360.6	gi|257053058|ref|YP_003130891.1|	-	1.1e-57	195.3	16.3	2.9e-23	82.7	5.1	3.3	1	1	2	3	3	3	3	PQQ-like	domain
DUF5074	PF16819.5	gi|257053058|ref|YP_003130891.1|	-	0.00066	19.7	1.1	7.2	6.7	0.0	4.5	3	3	1	4	4	4	1	Domain	of	unknown	function	(DUF5074)
SUKH-4	PF14435.6	gi|257053058|ref|YP_003130891.1|	-	0.0015	18.6	11.9	0.38	10.8	0.0	5.5	2	2	4	6	6	6	1	SUKH-4	immunity	protein
DUF1150	PF06620.11	gi|257053058|ref|YP_003130891.1|	-	0.052	13.7	0.6	66	3.7	0.0	4.8	5	0	0	5	5	5	0	Protein	of	unknown	function	(DUF1150)
DUF2793	PF10983.8	gi|257053058|ref|YP_003130891.1|	-	6.8	6.6	7.0	8	6.4	1.1	3.5	3	1	0	3	3	3	0	Protein	of	unknown	function	(DUF2793)
Glycos_transf_1	PF00534.20	gi|257053059|ref|YP_003130892.1|	-	1.9e-15	56.8	0.0	3e-15	56.2	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|257053059|ref|YP_003130892.1|	-	7e-12	45.9	0.0	1.1e-11	45.2	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|257053059|ref|YP_003130892.1|	-	1.1e-06	28.8	1.7	5.5e-05	23.2	0.1	2.4	2	0	0	2	2	2	2	Glycosyltransferase	Family	4
Sulfatase	PF00884.23	gi|257053060|ref|YP_003130893.1|	-	0.00069	19.1	0.0	0.00091	18.7	0.0	1.2	1	0	0	1	1	1	1	Sulfatase
Aldo_ket_red	PF00248.21	gi|257053061|ref|YP_003130894.1|	-	3.3e-43	148.0	0.0	3.1e-41	141.5	0.0	2.3	1	1	0	1	1	1	1	Aldo/keto	reductase	family
GFO_IDH_MocA	PF01408.22	gi|257053061|ref|YP_003130894.1|	-	7.6e-17	62.2	0.1	1.3e-14	55.1	0.1	2.5	2	0	0	2	2	2	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
NAD_binding_3	PF03447.16	gi|257053061|ref|YP_003130894.1|	-	2.9e-06	27.9	1.0	7.1e-06	26.7	1.0	1.6	1	0	0	1	1	1	1	Homoserine	dehydrogenase,	NAD	binding	domain
CDP-OH_P_transf	PF01066.21	gi|257053063|ref|YP_003130896.1|	-	5.4e-08	33.5	1.7	1e-07	32.6	0.1	2.1	2	0	0	2	2	2	1	CDP-alcohol	phosphatidyltransferase
YdjM	PF04307.14	gi|257053064|ref|YP_003130897.1|	-	1	8.7	9.1	3.7	6.8	9.1	2.0	1	1	0	1	1	1	0	LexA-binding,	inner	membrane-associated	putative	hydrolase
PAP2	PF01569.21	gi|257053065|ref|YP_003130898.1|	-	1.4e-15	57.3	7.4	1.4e-15	57.3	7.4	1.5	1	1	0	1	1	1	1	PAP2	superfamily
PAP2_3	PF14378.6	gi|257053065|ref|YP_003130898.1|	-	8e-09	35.4	13.4	1.8e-07	31.1	13.4	2.0	1	1	0	1	1	1	1	PAP2	superfamily
EamA	PF00892.20	gi|257053065|ref|YP_003130898.1|	-	0.051	13.7	6.6	1.1	9.4	1.0	2.3	2	0	0	2	2	2	0	EamA-like	transporter	family
PAP2_C	PF14360.6	gi|257053065|ref|YP_003130898.1|	-	0.46	11.1	4.5	0.38	11.3	0.5	2.3	2	0	0	2	2	2	0	PAP2	superfamily	C-terminal
DUF1772	PF08592.11	gi|257053065|ref|YP_003130898.1|	-	0.58	10.5	10.7	0.055	13.8	2.2	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1772)
GCH_III	PF05165.12	gi|257053066|ref|YP_003130899.1|	-	2.9e-87	292.0	0.0	3.8e-87	291.7	0.0	1.0	1	0	0	1	1	1	1	GTP	cyclohydrolase	III
GGDEF_2	PF17853.1	gi|257053066|ref|YP_003130899.1|	-	2.6e-06	27.7	0.4	0.022	15.0	0.1	2.3	2	0	0	2	2	2	2	GGDEF-like	domain
mCpol	PF18182.1	gi|257053066|ref|YP_003130899.1|	-	0.00046	20.5	0.0	0.0062	16.9	0.0	2.1	2	0	0	2	2	2	1	minimal	CRISPR	polymerase	domain
GvpH	PF05455.11	gi|257053066|ref|YP_003130899.1|	-	0.05	13.7	2.2	0.56	10.2	1.1	2.3	2	1	0	2	2	2	0	GvpH
ADH_zinc_N	PF00107.26	gi|257053067|ref|YP_003130900.1|	-	8e-13	48.5	0.0	1.5e-12	47.6	0.0	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
Glu_dehyd_C	PF16912.5	gi|257053067|ref|YP_003130900.1|	-	0.00044	19.8	0.0	0.00079	19.0	0.0	1.3	1	0	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
ADH_zinc_N_2	PF13602.6	gi|257053067|ref|YP_003130900.1|	-	0.0012	19.9	0.0	0.0029	18.7	0.0	1.6	1	1	0	1	1	1	1	Zinc-binding	dehydrogenase
ThiF	PF00899.21	gi|257053067|ref|YP_003130900.1|	-	0.083	12.2	0.2	0.14	11.5	0.2	1.2	1	0	0	1	1	1	0	ThiF	family
Sacchrp_dh_NADP	PF03435.18	gi|257053067|ref|YP_003130900.1|	-	0.094	13.0	0.0	0.15	12.3	0.0	1.4	1	0	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
2-Hacid_dh_C	PF02826.19	gi|257053067|ref|YP_003130900.1|	-	0.14	11.5	0.0	0.23	10.8	0.0	1.2	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
ADH_N	PF08240.12	gi|257053067|ref|YP_003130900.1|	-	0.19	11.6	0.0	0.57	10.1	0.0	1.8	2	0	0	2	2	2	0	Alcohol	dehydrogenase	GroES-like	domain
PTPS	PF01242.19	gi|257053068|ref|YP_003130901.1|	-	1.6e-23	83.0	0.0	1.8e-23	82.8	0.0	1.0	1	0	0	1	1	1	1	6-pyruvoyl	tetrahydropterin	synthase
Methyltransf_25	PF13649.6	gi|257053069|ref|YP_003130902.1|	-	5.7e-08	33.4	0.0	2.8e-07	31.2	0.0	2.1	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|257053069|ref|YP_003130902.1|	-	3e-07	30.3	0.0	8.7e-07	28.9	0.0	1.7	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|257053069|ref|YP_003130902.1|	-	3.6e-07	30.1	0.0	5.3e-07	29.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|257053069|ref|YP_003130902.1|	-	2.7e-06	28.0	0.0	7.8e-06	26.6	0.0	1.8	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|257053069|ref|YP_003130902.1|	-	1.7e-05	25.4	0.0	4.5e-05	24.0	0.0	1.7	1	1	0	1	1	1	1	Methyltransferase	domain
PseudoU_synth_1	PF01416.20	gi|257053070|ref|YP_003130903.1|	-	2.2e-11	44.2	0.0	2.1e-08	34.6	0.0	2.3	2	0	0	2	2	2	2	tRNA	pseudouridine	synthase
Ferritin	PF00210.24	gi|257053071|ref|YP_003130904.1|	-	2.7e-29	101.9	1.9	3.2e-29	101.7	1.9	1.1	1	0	0	1	1	1	1	Ferritin-like	domain
DUF2383	PF09537.10	gi|257053071|ref|YP_003130904.1|	-	0.014	15.8	0.0	0.038	14.3	0.0	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF2383)
PNTB	PF02233.16	gi|257053073|ref|YP_003130906.1|	-	1.5e-172	574.7	14.1	1.7e-172	574.5	14.1	1.0	1	0	0	1	1	1	1	NAD(P)	transhydrogenase	beta	subunit
TPP_enzyme_M	PF00205.22	gi|257053073|ref|YP_003130906.1|	-	0.013	15.3	0.3	0.15	11.8	0.1	2.3	2	0	0	2	2	2	0	Thiamine	pyrophosphate	enzyme,	central	domain
PNTB_4TM	PF12769.7	gi|257053074|ref|YP_003130907.1|	-	2.6e-29	101.5	6.4	3e-29	101.3	6.4	1.0	1	0	0	1	1	1	1	4TM	region	of	pyridine	nucleotide	transhydrogenase,	mitoch
TMEM206	PF15122.6	gi|257053074|ref|YP_003130907.1|	-	0.15	11.2	0.1	0.23	10.6	0.1	1.3	1	1	0	1	1	1	0	TMEM206	protein	family
DUF1146	PF06612.11	gi|257053074|ref|YP_003130907.1|	-	0.32	11.1	4.5	0.18	11.9	1.0	2.3	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1146)
AlaDh_PNT_C	PF01262.21	gi|257053075|ref|YP_003130908.1|	-	9.1e-70	234.3	1.7	1.2e-69	233.9	1.7	1.1	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
AlaDh_PNT_N	PF05222.15	gi|257053075|ref|YP_003130908.1|	-	1.8e-38	131.9	0.6	2.5e-37	128.2	0.0	2.3	2	0	0	2	2	2	1	Alanine	dehydrogenase/PNT,	N-terminal	domain
2-Hacid_dh_C	PF02826.19	gi|257053075|ref|YP_003130908.1|	-	5.1e-07	29.2	0.0	0.0016	17.8	0.0	2.3	1	1	1	2	2	2	2	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_2	PF03446.15	gi|257053075|ref|YP_003130908.1|	-	0.00025	21.3	0.5	0.0012	19.0	0.5	2.1	1	1	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
HI0933_like	PF03486.14	gi|257053075|ref|YP_003130908.1|	-	0.0003	19.6	0.1	0.0094	14.7	0.0	2.5	3	0	0	3	3	3	1	HI0933-like	protein
Pyr_redox_2	PF07992.14	gi|257053075|ref|YP_003130908.1|	-	0.00045	19.6	0.2	0.00066	19.0	0.2	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.18	gi|257053075|ref|YP_003130908.1|	-	0.0091	15.9	1.7	0.016	15.1	1.7	1.4	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
GIDA	PF01134.22	gi|257053075|ref|YP_003130908.1|	-	0.0097	15.0	0.2	0.015	14.4	0.2	1.2	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
XdhC_C	PF13478.6	gi|257053075|ref|YP_003130908.1|	-	0.023	15.2	0.3	1.2	9.6	0.3	2.5	2	0	0	2	2	2	0	XdhC	Rossmann	domain
NAD_binding_8	PF13450.6	gi|257053075|ref|YP_003130908.1|	-	0.026	14.8	0.3	0.15	12.3	0.2	2.2	2	0	0	2	2	2	0	NAD(P)-binding	Rossmann-like	domain
ADH_zinc_N	PF00107.26	gi|257053075|ref|YP_003130908.1|	-	0.08	12.9	0.4	0.26	11.3	0.4	2.0	1	1	0	1	1	1	0	Zinc-binding	dehydrogenase
DUF1611_N	PF17396.2	gi|257053075|ref|YP_003130908.1|	-	0.19	12.0	1.2	1.2	9.4	0.1	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1611_N)	Rossmann-like	domain
PIN_5	PF08745.11	gi|257053076|ref|YP_003130909.1|	-	2.6e-82	275.3	0.3	2.9e-82	275.1	0.3	1.0	1	0	0	1	1	1	1	PINc	domain	ribonuclease
PIN_3	PF13470.6	gi|257053076|ref|YP_003130909.1|	-	0.011	16.5	1.5	0.077	13.8	1.5	2.1	1	1	0	1	1	1	0	PIN	domain
CorA	PF01544.18	gi|257053076|ref|YP_003130909.1|	-	0.063	12.6	0.3	0.095	12.0	0.3	1.3	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
eRF1_2	PF03464.15	gi|257053078|ref|YP_003130911.1|	-	7.9e-41	139.5	0.0	1.5e-40	138.6	0.0	1.5	1	0	0	1	1	1	1	eRF1	domain	2
eRF1_3	PF03465.15	gi|257053078|ref|YP_003130911.1|	-	2.2e-28	99.0	0.2	5.8e-28	97.6	0.2	1.8	1	0	0	1	1	1	1	eRF1	domain	3
acVLRF1	PF18859.1	gi|257053078|ref|YP_003130911.1|	-	9.1e-18	64.8	0.2	2.3e-17	63.5	0.2	1.7	1	0	0	1	1	1	1	Actinobacteria/chloroflexi	VLRF1	release	factor
baeRF_family10	PF18854.1	gi|257053078|ref|YP_003130911.1|	-	1.8e-13	50.9	0.3	7.6e-13	48.9	0.0	2.2	2	0	0	2	2	2	1	Bacterial	archaeo-eukaryotic	release	factor	family	10
eRF1_1	PF03463.15	gi|257053078|ref|YP_003130911.1|	-	1.7e-10	41.0	0.0	2.6e-10	40.4	0.0	1.3	1	0	0	1	1	1	1	eRF1	domain	1
Zn-ribbon_8	PF09723.10	gi|257053078|ref|YP_003130911.1|	-	0.077	13.1	3.6	0.091	12.9	2.0	1.9	2	0	0	2	2	2	0	Zinc	ribbon	domain
AAA_31	PF13614.6	gi|257053079|ref|YP_003130912.1|	-	2.6e-19	69.8	0.0	3.9e-19	69.2	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|257053079|ref|YP_003130912.1|	-	1.6e-17	63.8	0.0	2.9e-17	62.9	0.0	1.4	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.9	gi|257053079|ref|YP_003130912.1|	-	3.2e-16	59.5	5.9	6.8e-15	55.2	5.9	2.6	1	1	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
CBP_BcsQ	PF06564.12	gi|257053079|ref|YP_003130912.1|	-	3.1e-11	43.2	0.1	4.7e-11	42.6	0.1	1.2	1	0	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
MipZ	PF09140.11	gi|257053079|ref|YP_003130912.1|	-	8.5e-10	38.4	0.4	1.6e-09	37.4	0.4	1.4	1	1	0	1	1	1	1	ATPase	MipZ
ArsA_ATPase	PF02374.15	gi|257053079|ref|YP_003130912.1|	-	3.6e-06	26.4	3.1	1.1e-05	24.8	1.4	2.0	1	1	0	2	2	2	1	Anion-transporting	ATPase
AAA_26	PF13500.6	gi|257053079|ref|YP_003130912.1|	-	1.4e-05	25.0	2.0	0.00027	20.8	2.0	2.6	1	1	0	1	1	1	1	AAA	domain
Fer4_NifH	PF00142.18	gi|257053079|ref|YP_003130912.1|	-	1.6e-05	24.5	0.0	0.0032	16.9	0.0	2.1	2	0	0	2	2	2	2	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
AAA_24	PF13479.6	gi|257053079|ref|YP_003130912.1|	-	0.00059	19.6	0.1	0.001	18.8	0.1	1.3	1	0	0	1	1	1	1	AAA	domain
SRP54	PF00448.22	gi|257053079|ref|YP_003130912.1|	-	0.00094	18.9	0.8	0.25	11.0	0.3	2.3	2	0	0	2	2	2	2	SRP54-type	protein,	GTPase	domain
DUF1611	PF07755.11	gi|257053079|ref|YP_003130912.1|	-	0.021	14.1	3.5	0.55	9.5	1.2	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF1611_C)	P-loop	domain
AAA_30	PF13604.6	gi|257053079|ref|YP_003130912.1|	-	0.057	13.1	0.3	0.095	12.4	0.3	1.5	1	0	0	1	1	1	0	AAA	domain
MeaB	PF03308.16	gi|257053079|ref|YP_003130912.1|	-	0.058	12.4	4.0	1.1	8.2	0.8	2.1	2	0	0	2	2	2	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
VirC1	PF07015.11	gi|257053079|ref|YP_003130912.1|	-	0.071	12.4	1.1	0.78	9.0	0.2	2.1	2	0	0	2	2	2	0	VirC1	protein
AAA_25	PF13481.6	gi|257053079|ref|YP_003130912.1|	-	0.3	10.6	6.0	0.44	10.1	4.2	2.2	2	1	0	2	2	2	0	AAA	domain
tRNA-synt_1d	PF00750.19	gi|257053080|ref|YP_003130913.1|	-	4.7e-36	124.5	0.0	6.1e-36	124.1	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(R)
DALR_1	PF05746.15	gi|257053080|ref|YP_003130913.1|	-	5.1e-34	117.0	0.0	1.6e-33	115.4	0.0	1.9	1	0	0	1	1	1	1	DALR	anticodon	binding	domain
Arg_tRNA_synt_N	PF03485.16	gi|257053080|ref|YP_003130913.1|	-	3.5e-08	33.9	0.0	1e-07	32.5	0.0	1.8	1	0	0	1	1	1	1	Arginyl	tRNA	synthetase	N	terminal	domain
tRNA-synt_1f	PF01921.18	gi|257053080|ref|YP_003130913.1|	-	0.018	14.0	0.0	0.11	11.3	0.0	2.0	2	0	0	2	2	2	0	tRNA	synthetases	class	I	(K)
ADH_N	PF08240.12	gi|257053081|ref|YP_003130914.1|	-	5.5e-32	109.9	0.2	1e-31	109.0	0.2	1.4	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|257053081|ref|YP_003130914.1|	-	2.3e-25	89.1	0.7	3.3e-25	88.5	0.7	1.2	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
Glu_dehyd_C	PF16912.5	gi|257053081|ref|YP_003130914.1|	-	3.6e-07	29.9	1.7	5.2e-07	29.4	1.7	1.2	1	0	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
ADH_zinc_N_2	PF13602.6	gi|257053081|ref|YP_003130914.1|	-	7.6e-07	30.2	0.7	7.6e-07	30.2	0.7	1.7	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
Sacchrp_dh_NADP	PF03435.18	gi|257053081|ref|YP_003130914.1|	-	0.002	18.4	0.5	0.0035	17.6	0.5	1.4	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
NAD_binding_7	PF13241.6	gi|257053081|ref|YP_003130914.1|	-	0.0025	18.2	0.4	0.0046	17.4	0.4	1.4	1	0	0	1	1	1	1	Putative	NAD(P)-binding
TrkA_N	PF02254.18	gi|257053081|ref|YP_003130914.1|	-	0.0041	17.4	0.5	0.0077	16.5	0.5	1.6	1	0	0	1	1	1	1	TrkA-N	domain
Methyltransf_25	PF13649.6	gi|257053081|ref|YP_003130914.1|	-	0.008	16.9	0.2	0.021	15.5	0.2	1.8	1	0	0	1	1	1	1	Methyltransferase	domain
2-Hacid_dh_C	PF02826.19	gi|257053081|ref|YP_003130914.1|	-	0.0088	15.4	0.3	0.017	14.5	0.3	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Methyltransf_24	PF13578.6	gi|257053081|ref|YP_003130914.1|	-	0.014	16.4	0.2	0.03	15.3	0.2	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
AlaDh_PNT_C	PF01262.21	gi|257053081|ref|YP_003130914.1|	-	0.018	14.3	1.6	0.033	13.5	1.6	1.5	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
NAD_binding_3	PF03447.16	gi|257053081|ref|YP_003130914.1|	-	0.02	15.5	1.3	0.041	14.5	1.3	1.5	1	0	0	1	1	1	0	Homoserine	dehydrogenase,	NAD	binding	domain
F420_oxidored	PF03807.17	gi|257053081|ref|YP_003130914.1|	-	0.033	14.8	0.4	0.065	13.8	0.4	1.6	1	0	0	1	1	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
GFO_IDH_MocA	PF01408.22	gi|257053081|ref|YP_003130914.1|	-	0.04	14.7	0.2	0.071	13.9	0.2	1.4	1	0	0	1	1	1	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
3HCDH_N	PF02737.18	gi|257053081|ref|YP_003130914.1|	-	1.4	8.8	5.2	0.5	10.2	2.3	1.8	2	1	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
DUF433	PF04255.14	gi|257053082|ref|YP_003130915.1|	-	2.5e-17	62.5	0.1	3e-17	62.2	0.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF433)
Radical_SAM	PF04055.21	gi|257053084|ref|YP_003130917.1|	-	6.7e-20	72.1	0.1	1.3e-19	71.2	0.1	1.5	1	1	0	1	1	1	1	Radical	SAM	superfamily
Wyosine_form	PF08608.12	gi|257053084|ref|YP_003130917.1|	-	1.4e-16	60.5	0.0	3.4e-16	59.4	0.0	1.7	1	0	0	1	1	1	1	Wyosine	base	formation
Hydrolase	PF00702.26	gi|257053084|ref|YP_003130917.1|	-	0.048	13.9	0.0	0.078	13.3	0.0	1.4	1	1	0	1	1	1	0	haloacid	dehalogenase-like	hydrolase
Hydrolase_6	PF13344.6	gi|257053084|ref|YP_003130917.1|	-	0.2	11.8	0.0	0.46	10.6	0.0	1.6	1	0	0	1	1	1	0	Haloacid	dehalogenase-like	hydrolase
CTP-dep_RFKase	PF01982.16	gi|257053086|ref|YP_003130919.1|	-	5.8e-43	145.8	0.0	8.6e-43	145.3	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF120
MarR_2	PF12802.7	gi|257053086|ref|YP_003130919.1|	-	0.00018	21.4	0.9	0.00033	20.5	0.5	1.6	2	0	0	2	2	2	1	MarR	family
HTH_24	PF13412.6	gi|257053086|ref|YP_003130919.1|	-	0.00018	21.0	0.0	0.00032	20.2	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|257053086|ref|YP_003130919.1|	-	0.00044	20.1	0.0	0.00075	19.4	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|257053086|ref|YP_003130919.1|	-	0.0008	19.4	0.5	0.0021	18.1	0.5	1.7	1	1	0	1	1	1	1	Helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|257053086|ref|YP_003130919.1|	-	0.0061	16.5	0.1	0.012	15.5	0.1	1.5	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_11	PF08279.12	gi|257053086|ref|YP_003130919.1|	-	0.0074	16.2	0.1	0.014	15.4	0.1	1.4	1	0	0	1	1	1	1	HTH	domain
HTH_AsnC-type	PF13404.6	gi|257053086|ref|YP_003130919.1|	-	0.023	14.5	0.2	0.023	14.5	0.2	2.0	3	0	0	3	3	3	0	AsnC-type	helix-turn-helix	domain
Ribosomal_S19e	PF01090.19	gi|257053086|ref|YP_003130919.1|	-	0.11	12.2	0.1	0.16	11.6	0.1	1.2	1	0	0	1	1	1	0	Ribosomal	protein	S19e
Fe_dep_repress	PF01325.19	gi|257053086|ref|YP_003130919.1|	-	0.12	12.6	0.2	0.35	11.1	0.0	1.8	2	0	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Aminotran_4	PF01063.19	gi|257053087|ref|YP_003130920.1|	-	5.1e-49	167.1	0.0	5.9e-49	166.9	0.0	1.0	1	0	0	1	1	1	1	Amino-transferase	class	IV
DUF1738	PF08401.11	gi|257053087|ref|YP_003130920.1|	-	0.095	12.8	0.0	0.17	12.0	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1738)
DUF502	PF04367.13	gi|257053088|ref|YP_003130921.1|	-	7e-19	67.7	0.3	1.6e-18	66.5	0.0	1.7	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF502)
Fig1	PF12351.8	gi|257053088|ref|YP_003130921.1|	-	0.035	14.0	0.6	0.045	13.7	0.6	1.1	1	0	0	1	1	1	0	Ca2+	regulator	and	membrane	fusion	protein	Fig1
DUF3995	PF13160.6	gi|257053088|ref|YP_003130921.1|	-	0.095	13.1	1.1	0.15	12.4	1.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3995)
CBS	PF00571.28	gi|257053089|ref|YP_003130922.1|	-	6e-30	103.5	6.1	1.3e-15	57.6	0.7	2.1	2	0	0	2	2	2	2	CBS	domain
PB1	PF00564.24	gi|257053089|ref|YP_003130922.1|	-	0.012	15.6	1.4	3.3	7.7	0.0	3.1	2	1	1	3	3	3	0	PB1	domain
EamA	PF00892.20	gi|257053090|ref|YP_003130923.1|	-	9e-37	126.3	31.9	2.2e-19	70.0	13.2	2.0	2	0	0	2	2	2	2	EamA-like	transporter	family
SLC35F	PF06027.12	gi|257053090|ref|YP_003130923.1|	-	0.026	14.1	4.7	0.034	13.7	4.7	1.3	1	0	0	1	1	1	0	Solute	carrier	family	35
CRT-like	PF08627.10	gi|257053090|ref|YP_003130923.1|	-	0.49	9.3	3.5	0.26	10.2	0.3	1.9	2	0	0	2	2	2	0	CRT-like,	chloroquine-resistance	transporter-like
Fe_dep_repress	PF01325.19	gi|257053092|ref|YP_003130925.1|	-	1.1e-10	41.6	0.0	2e-10	40.7	0.0	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR_2	PF12802.7	gi|257053092|ref|YP_003130925.1|	-	3.6e-05	23.6	0.0	8.1e-05	22.4	0.0	1.6	1	0	0	1	1	1	1	MarR	family
Fe_dep_repr_C	PF02742.15	gi|257053092|ref|YP_003130925.1|	-	0.0021	18.1	0.1	0.0054	16.8	0.1	1.7	2	0	0	2	2	2	1	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
MarR	PF01047.22	gi|257053092|ref|YP_003130925.1|	-	0.0026	17.6	0.0	0.0051	16.7	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.12	gi|257053092|ref|YP_003130925.1|	-	0.0098	15.8	0.0	0.023	14.6	0.0	1.6	1	0	0	1	1	1	1	HTH	domain
HTH_Crp_2	PF13545.6	gi|257053092|ref|YP_003130925.1|	-	0.012	15.6	0.0	0.032	14.2	0.0	1.8	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
TrmB	PF01978.19	gi|257053092|ref|YP_003130925.1|	-	0.032	14.1	0.0	0.059	13.3	0.0	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
LZ_Tnp_IS481	PF13011.6	gi|257053092|ref|YP_003130925.1|	-	0.071	13.7	0.0	0.24	11.9	0.0	1.8	2	1	0	2	2	2	0	leucine-zipper	of	insertion	element	IS481
HTH_24	PF13412.6	gi|257053092|ref|YP_003130925.1|	-	0.08	12.5	0.0	0.21	11.2	0.0	1.7	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
UPF0016	PF01169.19	gi|257053093|ref|YP_003130926.1|	-	8.9e-24	83.6	21.7	1.9e-14	53.8	4.3	2.7	3	0	0	3	3	3	2	Uncharacterized	protein	family	UPF0016
Fe_dep_repr_C	PF02742.15	gi|257053094|ref|YP_003130927.1|	-	4.1e-29	100.5	2.6	9.9e-29	99.2	2.6	1.7	1	0	0	1	1	1	1	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
Fe_dep_repress	PF01325.19	gi|257053094|ref|YP_003130927.1|	-	6.6e-18	64.7	0.3	1.3e-17	63.7	0.3	1.6	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
FeoA	PF04023.14	gi|257053094|ref|YP_003130927.1|	-	1.7e-12	47.4	0.1	3.4e-12	46.4	0.1	1.5	1	0	0	1	1	1	1	FeoA	domain
MarR	PF01047.22	gi|257053094|ref|YP_003130927.1|	-	4.4e-07	29.7	0.0	8.2e-07	28.9	0.0	1.4	1	0	0	1	1	1	1	MarR	family
MarR_2	PF12802.7	gi|257053094|ref|YP_003130927.1|	-	2.2e-06	27.4	0.2	8.6e-06	25.6	0.1	2.1	2	0	0	2	2	2	1	MarR	family
HTH_Crp_2	PF13545.6	gi|257053094|ref|YP_003130927.1|	-	3.2e-05	23.8	0.2	0.00049	20.0	0.0	2.4	3	0	0	3	3	2	1	Crp-like	helix-turn-helix	domain
HTH_12	PF08461.10	gi|257053094|ref|YP_003130927.1|	-	0.0002	21.2	0.3	0.00079	19.3	0.2	2.1	1	1	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
HTH_IclR	PF09339.10	gi|257053094|ref|YP_003130927.1|	-	0.0012	18.6	0.0	0.0028	17.4	0.0	1.7	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Rrf2	PF02082.20	gi|257053094|ref|YP_003130927.1|	-	0.0018	18.6	0.2	0.0049	17.2	0.0	1.8	2	0	0	2	2	1	1	Transcriptional	regulator
HTH_20	PF12840.7	gi|257053094|ref|YP_003130927.1|	-	0.0021	18.1	0.1	0.0087	16.1	0.1	2.1	2	0	0	2	2	2	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|257053094|ref|YP_003130927.1|	-	0.0025	17.6	0.1	0.017	15.0	0.0	2.1	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
GntR	PF00392.21	gi|257053094|ref|YP_003130927.1|	-	0.0041	16.7	0.0	0.01	15.4	0.0	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_1	PF00126.27	gi|257053094|ref|YP_003130927.1|	-	0.0045	16.9	0.1	0.012	15.5	0.1	1.8	1	0	0	1	1	1	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_27	PF13463.6	gi|257053094|ref|YP_003130927.1|	-	0.0077	16.7	0.2	0.038	14.5	0.1	2.2	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_24	PF13412.6	gi|257053094|ref|YP_003130927.1|	-	0.017	14.7	0.0	0.034	13.7	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
FaeA	PF04703.12	gi|257053094|ref|YP_003130927.1|	-	0.019	15.3	0.0	0.034	14.5	0.0	1.4	1	0	0	1	1	1	0	FaeA-like	protein
HTH_45	PF14947.6	gi|257053094|ref|YP_003130927.1|	-	0.023	14.7	0.0	0.051	13.6	0.0	1.6	2	0	0	2	2	1	0	Winged	helix-turn-helix
Crp	PF00325.20	gi|257053094|ref|YP_003130927.1|	-	0.024	14.3	0.0	0.094	12.4	0.0	2.0	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	crp	family
DUF2250	PF10007.9	gi|257053094|ref|YP_003130927.1|	-	0.036	14.2	0.1	0.073	13.2	0.1	1.5	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
Nmad3	PF18754.1	gi|257053095|ref|YP_003130928.1|	-	2.2e-33	115.9	0.0	2.6e-33	115.7	0.0	1.0	1	0	0	1	1	1	1	Nucleotide	modification	associated	domain	3
DMRL_synthase	PF00885.19	gi|257053096|ref|YP_003130929.1|	-	2.1e-60	202.6	0.0	2.4e-60	202.4	0.0	1.0	1	0	0	1	1	1	1	6,7-dimethyl-8-ribityllumazine	synthase
DHBP_synthase	PF00926.19	gi|257053097|ref|YP_003130930.1|	-	3.1e-78	261.7	0.5	5.2e-78	261.0	0.1	1.5	2	0	0	2	2	2	1	3,4-dihydroxy-2-butanone	4-phosphate	synthase
GTP_cyclohydro2	PF00925.20	gi|257053097|ref|YP_003130930.1|	-	5.5e-61	204.9	0.0	1.3e-60	203.7	0.0	1.5	2	0	0	2	2	2	1	GTP	cyclohydrolase	II
PucR	PF07905.11	gi|257053097|ref|YP_003130930.1|	-	0.05	13.9	0.0	0.11	12.8	0.0	1.5	1	0	0	1	1	1	0	Purine	catabolism	regulatory	protein-like	family
Lum_binding	PF00677.17	gi|257053098|ref|YP_003130931.1|	-	1.5e-45	153.1	2.2	2.1e-22	78.9	0.2	2.1	2	0	0	2	2	2	2	Lumazine	binding	domain
DUF211	PF02680.14	gi|257053098|ref|YP_003130931.1|	-	0.16	12.2	4.8	3.6	7.8	0.1	2.9	2	2	1	3	3	3	0	Uncharacterized	ArCR,	COG1888
DUF1071	PF06378.11	gi|257053098|ref|YP_003130931.1|	-	0.17	11.5	0.0	0.24	11.0	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1071)
Imm65	PF15582.6	gi|257053098|ref|YP_003130931.1|	-	0.2	10.5	0.0	0.66	8.8	0.0	1.7	2	0	0	2	2	2	0	Immunity	protein	65
Binary_toxB	PF03495.14	gi|257053100|ref|YP_003130933.1|	-	0.0034	17.5	0.1	0.0034	17.5	0.1	12.8	15	3	2	17	17	17	3	Clostridial	binary	toxin	B/anthrax	toxin	PA	Ca-binding	domain
FCD	PF07729.12	gi|257053101|ref|YP_003130934.1|	-	0.12	12.8	0.2	0.28	11.6	0.2	1.6	1	0	0	1	1	1	0	FCD	domain
Gemini_AL2	PF01440.16	gi|257053101|ref|YP_003130934.1|	-	0.19	12.2	0.0	0.5	10.8	0.0	1.7	1	0	0	1	1	1	0	Geminivirus	AL2	protein
HEAT_2	PF13646.6	gi|257053104|ref|YP_003130937.1|	-	0.0019	18.6	2.1	0.0039	17.5	0.6	2.3	2	1	0	3	3	3	1	HEAT	repeats
DUF4214	PF13946.6	gi|257053104|ref|YP_003130937.1|	-	0.028	14.5	0.1	0.069	13.2	0.1	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4214)
TarH	PF02203.15	gi|257053106|ref|YP_003130939.1|	-	0.041	13.8	0.0	0.13	12.2	0.0	1.7	1	1	0	1	1	1	0	Tar	ligand	binding	domain	homologue
FlgT_N	PF16548.5	gi|257053106|ref|YP_003130939.1|	-	0.077	13.6	0.7	2.1	9.0	0.2	3.0	2	0	0	2	2	2	0	Flagellar	assembly	protein	T,	N-terminal	domain
MerR-DNA-bind	PF09278.11	gi|257053106|ref|YP_003130939.1|	-	0.14	12.7	0.1	0.14	12.7	0.1	2.3	3	0	0	3	3	3	0	MerR,	DNA	binding
AAA_5	PF07728.14	gi|257053106|ref|YP_003130939.1|	-	0.19	11.8	1.4	19	5.2	0.0	3.7	2	1	1	4	4	4	0	AAA	domain	(dynein-related	subfamily)
PQQ	PF01011.21	gi|257053107|ref|YP_003130940.1|	-	0.0064	16.4	0.1	0.056	13.4	0.0	2.3	2	1	1	3	3	3	1	PQQ	enzyme	repeat
PQQ_2	PF13360.6	gi|257053107|ref|YP_003130940.1|	-	0.027	14.1	0.0	0.031	13.8	0.0	1.1	1	0	0	1	1	1	0	PQQ-like	domain
PepSY	PF03413.19	gi|257053107|ref|YP_003130940.1|	-	0.14	12.7	0.8	0.31	11.6	0.8	1.7	1	1	0	1	1	1	0	Peptidase	propeptide	and	YPEB	domain
MarR_2	PF12802.7	gi|257053108|ref|YP_003130941.1|	-	1.5e-13	50.4	1.5	8.1e-07	28.8	0.9	2.6	2	0	0	2	2	2	2	MarR	family
TrmB	PF01978.19	gi|257053108|ref|YP_003130941.1|	-	1.1e-08	34.8	0.1	0.00024	20.9	0.0	3.1	4	0	0	4	4	3	2	Sugar-specific	transcriptional	regulator	TrmB
Rrf2	PF02082.20	gi|257053108|ref|YP_003130941.1|	-	1.2e-07	31.9	0.0	0.0048	17.2	0.0	2.6	2	0	0	2	2	2	2	Transcriptional	regulator
HTH_Crp_2	PF13545.6	gi|257053108|ref|YP_003130941.1|	-	3.4e-07	30.2	0.0	0.00029	20.7	0.0	2.7	2	0	0	2	2	2	2	Crp-like	helix-turn-helix	domain
HTH_24	PF13412.6	gi|257053108|ref|YP_003130941.1|	-	5e-07	29.2	0.0	0.019	14.5	0.0	2.5	2	0	0	2	2	2	2	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|257053108|ref|YP_003130941.1|	-	6.9e-07	29.1	0.0	0.01	15.8	0.0	2.6	2	0	0	2	2	2	2	MarR	family
HTH_27	PF13463.6	gi|257053108|ref|YP_003130941.1|	-	1.3e-05	25.6	1.6	0.00015	22.2	0.2	2.7	3	0	0	3	3	3	1	Winged	helix	DNA-binding	domain
HTH_20	PF12840.7	gi|257053108|ref|YP_003130941.1|	-	2.2e-05	24.4	0.1	0.25	11.4	0.2	2.6	2	0	0	2	2	2	2	Helix-turn-helix	domain
HTH_23	PF13384.6	gi|257053108|ref|YP_003130941.1|	-	3e-05	23.7	0.1	0.065	13.1	0.0	2.5	2	0	0	2	2	2	2	Homeodomain-like	domain
HTH_29	PF13551.6	gi|257053108|ref|YP_003130941.1|	-	4.9e-05	23.3	0.3	0.087	12.9	0.0	2.5	2	0	0	2	2	2	2	Winged	helix-turn	helix
HTH_IclR	PF09339.10	gi|257053108|ref|YP_003130941.1|	-	0.0001	22.0	0.0	0.25	11.2	0.0	2.7	2	0	0	2	2	2	2	IclR	helix-turn-helix	domain
Crp	PF00325.20	gi|257053108|ref|YP_003130941.1|	-	0.00035	20.2	0.5	0.026	14.2	0.3	2.6	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	crp	family
HTH_28	PF13518.6	gi|257053108|ref|YP_003130941.1|	-	0.00097	19.2	0.1	0.16	12.1	0.0	2.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
GntR	PF00392.21	gi|257053108|ref|YP_003130941.1|	-	0.012	15.2	0.0	8	6.2	0.0	2.6	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
HTH_5	PF01022.20	gi|257053108|ref|YP_003130941.1|	-	0.021	14.7	0.0	9.8	6.1	0.0	2.7	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
HTH_38	PF13936.6	gi|257053108|ref|YP_003130941.1|	-	0.067	13.0	0.1	3.3	7.6	0.0	2.4	2	0	0	2	2	2	0	Helix-turn-helix	domain
LZ_Tnp_IS481	PF13011.6	gi|257053108|ref|YP_003130941.1|	-	0.092	13.3	0.1	0.2	12.2	0.1	1.6	1	0	0	1	1	1	0	leucine-zipper	of	insertion	element	IS481
PqqD	PF05402.12	gi|257053108|ref|YP_003130941.1|	-	0.18	12.1	1.0	6.7	7.1	0.0	3.7	4	1	0	4	4	4	0	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
Aldo_ket_red	PF00248.21	gi|257053109|ref|YP_003130942.1|	-	6.9e-56	189.6	0.0	5.7e-54	183.3	0.0	2.0	1	1	0	1	1	1	1	Aldo/keto	reductase	family
DUF393	PF04134.12	gi|257053110|ref|YP_003130943.1|	-	2.7e-15	57.7	0.0	3e-15	57.5	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF393
TraL	PF07178.11	gi|257053111|ref|YP_003130944.1|	-	0.0069	16.8	0.5	0.0083	16.6	0.5	1.1	1	0	0	1	1	1	1	TraL	protein
DUF2207	PF09972.9	gi|257053111|ref|YP_003130944.1|	-	0.029	13.1	0.3	0.029	13.1	0.3	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
DMT_YdcZ	PF04657.13	gi|257053111|ref|YP_003130944.1|	-	0.43	10.8	7.6	0.49	10.7	7.6	1.1	1	0	0	1	1	1	0	Putative	inner	membrane	exporter,	YdcZ
DUF5518	PF17647.1	gi|257053112|ref|YP_003130945.1|	-	1.1e-20	74.0	28.1	1.2e-20	73.8	28.1	1.0	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF5518)
Jiraiya	PF15038.6	gi|257053112|ref|YP_003130945.1|	-	0.12	11.8	4.1	0.19	11.1	4.1	1.3	1	0	0	1	1	1	0	Jiraiya
GHMP_kinases_N	PF00288.26	gi|257053113|ref|YP_003130946.1|	-	5.1e-15	55.5	1.4	1.3e-14	54.1	1.4	1.8	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.13	gi|257053113|ref|YP_003130946.1|	-	1.8e-13	50.6	1.5	2.3e-12	47.1	0.4	2.4	2	0	0	2	2	2	1	GHMP	kinases	C	terminal
GalKase_gal_bdg	PF10509.9	gi|257053113|ref|YP_003130946.1|	-	0.00015	21.3	0.1	0.00038	20.0	0.1	1.7	1	0	0	1	1	1	1	Galactokinase	galactose-binding	signature
AA_kinase	PF00696.28	gi|257053114|ref|YP_003130947.1|	-	4.6e-38	131.2	5.7	5.7e-38	130.9	5.7	1.0	1	0	0	1	1	1	1	Amino	acid	kinase	family
RuBisCO_large	PF00016.20	gi|257053114|ref|YP_003130947.1|	-	0.1	11.8	5.0	0.064	12.4	3.2	1.5	2	0	0	2	2	2	0	Ribulose	bisphosphate	carboxylase	large	chain,	catalytic	domain
Lactamase_B_2	PF12706.7	gi|257053116|ref|YP_003130949.1|	-	1.2e-09	37.9	2.0	3.3e-08	33.3	0.3	2.6	3	0	0	3	3	3	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|257053116|ref|YP_003130949.1|	-	9.5e-07	29.0	4.0	3e-06	27.4	4.0	1.9	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
RMMBL	PF07521.12	gi|257053116|ref|YP_003130949.1|	-	1.2e-05	25.2	0.2	0.0005	19.9	0.0	2.7	2	0	0	2	2	2	1	Zn-dependent	metallo-hydrolase	RNA	specificity	domain
DegT_DnrJ_EryC1	PF01041.17	gi|257053116|ref|YP_003130949.1|	-	0.042	13.1	0.1	8.3	5.6	0.0	2.2	2	0	0	2	2	2	0	DegT/DnrJ/EryC1/StrS	aminotransferase	family
polyprenyl_synt	PF00348.17	gi|257053117|ref|YP_003130950.1|	-	1.2e-63	214.6	0.0	1.4e-63	214.3	0.0	1.1	1	0	0	1	1	1	1	Polyprenyl	synthetase
Pkinase	PF00069.25	gi|257053118|ref|YP_003130951.1|	-	2.5e-08	33.6	0.0	4.5e-08	32.8	0.0	1.3	1	0	0	1	1	1	1	Protein	kinase	domain
Putative_PNPOx	PF01243.20	gi|257053118|ref|YP_003130951.1|	-	0.018	15.2	0.0	0.04	14.1	0.0	1.6	1	0	0	1	1	1	0	Pyridoxamine	5'-phosphate	oxidase
DUF937	PF06078.11	gi|257053118|ref|YP_003130951.1|	-	0.045	14.4	0.1	0.31	11.6	0.1	2.2	1	1	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF937)
Tubulin_2	PF13809.6	gi|257053119|ref|YP_003130952.1|	-	9.2e-14	51.4	0.1	7.4e-13	48.4	0.1	2.3	1	1	0	1	1	1	1	Tubulin	like
Tubulin	PF00091.25	gi|257053119|ref|YP_003130952.1|	-	4.5e-08	33.5	0.4	2.6e-07	31.0	0.0	2.5	3	0	0	3	3	3	1	Tubulin/FtsZ	family,	GTPase	domain
FliJ	PF02050.16	gi|257053119|ref|YP_003130952.1|	-	0.007	16.6	0.6	0.007	16.6	0.6	5.0	6	1	1	7	7	7	2	Flagellar	FliJ	protein
Baculo_PEP_C	PF04513.12	gi|257053119|ref|YP_003130952.1|	-	0.017	15.2	19.7	0.89	9.6	0.5	6.1	6	1	0	6	6	6	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Nre_C	PF04895.12	gi|257053119|ref|YP_003130952.1|	-	0.62	10.0	3.4	0.55	10.2	0.1	2.8	3	0	0	3	3	3	0	Archaeal	Nre,	C-terminal
CLZ	PF16526.5	gi|257053119|ref|YP_003130952.1|	-	1.1	9.6	22.2	0.42	11.0	1.0	6.2	6	1	0	7	7	7	0	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
TssO	PF17561.2	gi|257053119|ref|YP_003130952.1|	-	1.2	9.2	9.9	0.49	10.5	0.3	4.4	4	0	0	4	4	4	0	Type	VI	secretion	system,	TssO
DUF5320	PF17253.2	gi|257053119|ref|YP_003130952.1|	-	3.9	8.6	4.7	18	6.5	0.4	3.7	3	0	0	3	3	3	0	Family	of	unknown	function	(DUF5320)
cobW	PF02492.19	gi|257053120|ref|YP_003130953.1|	-	0.056	13.0	0.1	5.3	6.6	0.0	2.5	2	1	1	3	3	3	0	CobW/HypB/UreG,	nucleotide-binding	domain
PP-binding_2	PF14573.6	gi|257053120|ref|YP_003130953.1|	-	0.057	13.6	0.2	0.12	12.6	0.2	1.5	1	0	0	1	1	1	0	Acyl-carrier
TcpE	PF12648.7	gi|257053120|ref|YP_003130953.1|	-	0.088	13.4	1.4	0.16	12.5	0.3	2.0	2	0	0	2	2	2	0	TcpE	family
DUF2304	PF10066.9	gi|257053120|ref|YP_003130953.1|	-	4.9	7.4	11.3	4.1	7.7	0.3	3.0	2	1	1	3	3	3	0	Uncharacterized	conserved	protein	(DUF2304)
Pkinase	PF00069.25	gi|257053122|ref|YP_003130955.1|	-	1.6e-06	27.7	0.0	2.5e-06	27.1	0.0	1.2	1	0	0	1	1	1	1	Protein	kinase	domain
DUF808	PF05661.12	gi|257053122|ref|YP_003130955.1|	-	0.003	16.7	0.5	0.38	9.8	0.1	2.4	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF808)
DNA_pol_phi	PF04931.13	gi|257053122|ref|YP_003130955.1|	-	5.8	4.9	5.3	8.2	4.4	5.3	1.1	1	0	0	1	1	1	0	DNA	polymerase	phi
PQQ_2	PF13360.6	gi|257053123|ref|YP_003130956.1|	-	9.5e-31	107.2	23.0	5.8e-26	91.5	12.1	3.3	1	1	2	3	3	3	3	PQQ-like	domain
PQQ_3	PF13570.6	gi|257053123|ref|YP_003130956.1|	-	2.7e-28	97.7	27.7	4.9e-06	26.9	0.7	8.3	8	0	0	8	8	8	6	PQQ-like	domain
PQQ	PF01011.21	gi|257053123|ref|YP_003130956.1|	-	1e-16	59.9	12.0	2.7e-07	30.2	0.7	5.0	5	0	0	5	5	5	4	PQQ	enzyme	repeat
Pkinase	PF00069.25	gi|257053123|ref|YP_003130956.1|	-	1.2e-06	28.1	0.0	1.7e-06	27.6	0.0	1.2	1	0	0	1	1	1	1	Protein	kinase	domain
Pkinase_Tyr	PF07714.17	gi|257053123|ref|YP_003130956.1|	-	7.3e-05	22.2	0.0	0.00011	21.6	0.0	1.2	1	0	0	1	1	1	1	Protein	tyrosine	kinase
Usp	PF00582.26	gi|257053124|ref|YP_003130957.1|	-	9.2e-18	65.1	0.0	1.1e-17	64.9	0.0	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
LegC3_N	PF18654.1	gi|257053125|ref|YP_003130958.1|	-	0.19	10.9	3.5	0.24	10.6	3.5	1.1	1	0	0	1	1	1	0	LegC3	N-terminal	coiled-coil	domain
Flg_hook	PF02120.16	gi|257053126|ref|YP_003130959.1|	-	0.0033	17.3	2.0	1.7	8.6	0.1	3.7	3	1	1	4	4	3	1	Flagellar	hook-length	control	protein	FliK
Atg14	PF10186.9	gi|257053126|ref|YP_003130959.1|	-	0.0076	15.4	12.3	0.1	11.7	0.9	2.9	2	1	0	2	2	2	2	Vacuolar	sorting	38	and	autophagy-related	subunit	14
Spc7	PF08317.11	gi|257053126|ref|YP_003130959.1|	-	0.014	14.3	28.2	0.019	13.9	0.4	4.1	1	1	1	4	4	4	0	Spc7	kinetochore	protein
FlaC_arch	PF05377.11	gi|257053126|ref|YP_003130959.1|	-	0.014	15.8	2.1	0.014	15.8	2.1	5.4	6	2	2	8	8	8	0	Flagella	accessory	protein	C	(FlaC)
APG6_N	PF17675.1	gi|257053126|ref|YP_003130959.1|	-	0.016	15.8	49.6	0.55	10.8	0.1	5.9	4	1	2	6	6	6	0	Apg6	coiled-coil	region
DUF1664	PF07889.12	gi|257053126|ref|YP_003130959.1|	-	0.09	12.8	12.5	2.6	8.1	0.3	4.7	3	2	3	6	6	6	0	Protein	of	unknown	function	(DUF1664)
STAT_alpha	PF01017.20	gi|257053126|ref|YP_003130959.1|	-	0.14	12.1	1.0	0.49	10.3	0.1	2.4	2	1	1	3	3	3	0	STAT	protein,	all-alpha	domain
TMF_TATA_bd	PF12325.8	gi|257053126|ref|YP_003130959.1|	-	0.3	11.3	35.7	0.34	11.1	0.2	6.3	4	1	2	6	6	6	0	TATA	element	modulatory	factor	1	TATA	binding
DUF5082	PF16888.5	gi|257053126|ref|YP_003130959.1|	-	0.44	10.8	13.8	2.8	8.3	0.0	5.4	5	2	0	5	5	5	0	Domain	of	unknown	function	(DUF5082)
V_ATPase_I	PF01496.19	gi|257053126|ref|YP_003130959.1|	-	0.46	8.4	4.9	2	6.2	5.0	1.9	1	1	1	2	2	2	0	V-type	ATPase	116kDa	subunit	family
Fungal_TACC	PF12709.7	gi|257053126|ref|YP_003130959.1|	-	0.73	10.3	5.8	0.46	11.0	0.2	3.5	4	0	0	4	4	4	0	Fungal	Transforming	acidic	coiled-coil	(TACC)	proteins
DUF16	PF01519.16	gi|257053126|ref|YP_003130959.1|	-	0.93	10.0	6.5	8.6	6.9	0.2	3.9	3	2	1	4	4	3	0	Protein	of	unknown	function	DUF16
ACP_PD	PF04336.12	gi|257053126|ref|YP_003130959.1|	-	1.1	9.7	3.0	8.8	6.8	0.0	3.5	3	1	0	4	4	3	0	Acyl	carrier	protein	phosphodiesterase
DUF2997	PF11211.8	gi|257053126|ref|YP_003130959.1|	-	1.1	9.1	4.1	19	5.1	0.3	3.2	3	0	0	3	3	2	0	Protein	of	unknown	function	(DUF2997)
Snapin_Pallidin	PF14712.6	gi|257053126|ref|YP_003130959.1|	-	1.1	9.7	11.1	40	4.7	0.0	5.0	5	1	1	6	6	6	0	Snapin/Pallidin
HSBP1	PF06825.12	gi|257053126|ref|YP_003130959.1|	-	1.2	9.0	5.3	3.3	7.6	0.4	3.6	3	0	0	3	3	3	0	Heat	shock	factor	binding	protein	1
SNARE	PF05739.19	gi|257053126|ref|YP_003130959.1|	-	1.3	9.1	3.0	2.8	8.0	0.5	2.7	2	0	0	2	2	2	0	SNARE	domain
PEARLI-4	PF05278.12	gi|257053126|ref|YP_003130959.1|	-	4	7.0	14.6	5.9	6.4	0.2	4.1	3	1	1	4	4	4	0	Arabidopsis	phospholipase-like	protein	(PEARLI	4)
NPV_P10	PF05531.12	gi|257053126|ref|YP_003130959.1|	-	4.2	7.9	8.9	1.4	9.5	0.2	4.1	5	1	0	5	5	4	0	Nucleopolyhedrovirus	P10	protein
Laminin_II	PF06009.12	gi|257053126|ref|YP_003130959.1|	-	4.2	7.4	14.6	0.67	10.0	0.1	4.5	4	2	1	5	5	5	0	Laminin	Domain	II
DivIC	PF04977.15	gi|257053126|ref|YP_003130959.1|	-	5.9	6.7	33.6	3.3	7.5	0.2	6.7	6	1	1	7	7	7	0	Septum	formation	initiator
TPR_MLP1_2	PF07926.12	gi|257053126|ref|YP_003130959.1|	-	7.4	6.6	35.9	0.63	10.1	0.4	6.0	5	1	1	6	6	6	0	TPR/MLP1/MLP2-like	protein
Pentapeptide_3	PF13576.6	gi|257053127|ref|YP_003130960.1|	-	1.3e-41	140.5	107.6	2.7e-08	33.8	6.0	10.9	4	2	7	11	11	11	8	Pentapeptide	repeats	(9	copies)
Pentapeptide_4	PF13599.6	gi|257053127|ref|YP_003130960.1|	-	4.1e-07	30.1	32.9	0.019	15.1	3.0	7.8	1	1	4	5	5	5	3	Pentapeptide	repeats	(9	copies)
Ion_trans_2	PF07885.16	gi|257053127|ref|YP_003130960.1|	-	1.1e-05	25.3	1.8	3e-05	23.9	1.8	1.7	1	0	0	1	1	1	1	Ion	channel
Pentapeptide	PF00805.22	gi|257053127|ref|YP_003130960.1|	-	0.12	12.0	19.5	1.1	9.0	0.1	9.2	8	3	1	9	9	9	0	Pentapeptide	repeats	(8	copies)
Pup_ligase	PF03136.15	gi|257053127|ref|YP_003130960.1|	-	0.22	10.5	0.5	0.61	9.0	0.1	1.7	2	0	0	2	2	2	0	Pup-ligase	protein
WRC	PF08879.10	gi|257053127|ref|YP_003130960.1|	-	2.2	8.1	3.9	1.3	8.8	1.2	1.9	2	0	0	2	2	2	0	WRC
FaeA	PF04703.12	gi|257053128|ref|YP_003130961.1|	-	0.096	13.1	0.2	1.4	9.4	0.0	2.3	1	1	1	2	2	2	0	FaeA-like	protein
UbiA	PF01040.18	gi|257053129|ref|YP_003130962.1|	-	0.00018	20.9	1.2	0.00031	20.1	1.2	1.3	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
SecY	PF00344.20	gi|257053129|ref|YP_003130962.1|	-	0.0083	15.4	0.1	0.012	14.9	0.1	1.2	1	0	0	1	1	1	1	SecY	translocase
Cofac_haem_bdg	PF04187.13	gi|257053129|ref|YP_003130962.1|	-	0.036	14.1	0.3	9.2	6.2	0.0	2.2	2	0	0	2	2	2	0	Haem-binding	uptake,	Tiki	superfamily,	ChaN
DUF2207	PF09972.9	gi|257053129|ref|YP_003130962.1|	-	0.039	12.7	0.0	0.049	12.4	0.0	1.2	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
Spore_YtfJ	PF09579.10	gi|257053131|ref|YP_003130964.1|	-	0.00021	21.4	9.7	0.0003	20.9	7.4	2.2	1	1	1	2	2	2	1	Sporulation	protein	YtfJ	(Spore_YtfJ)
DUF3040	PF11239.8	gi|257053133|ref|YP_003130966.1|	-	4.2	7.7	7.1	45	4.4	3.8	3.0	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3040)
DUF2207	PF09972.9	gi|257053133|ref|YP_003130966.1|	-	4.5	5.9	6.5	6.1	5.5	1.7	2.2	2	0	0	2	2	2	0	Predicted	membrane	protein	(DUF2207)
Virul_fac_BrkB	PF03631.15	gi|257053133|ref|YP_003130966.1|	-	8.1	6.0	14.2	4.9	6.7	5.0	2.2	2	0	0	2	2	2	0	Virulence	factor	BrkB
DUF4957	PF16318.5	gi|257053134|ref|YP_003130967.1|	-	0.12	12.3	0.0	0.49	10.3	0.0	2.0	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4957)
MarR_2	PF12802.7	gi|257053135|ref|YP_003130968.1|	-	2.7e-07	30.4	0.8	3e-06	27.0	0.2	2.5	2	0	0	2	2	2	1	MarR	family
HTH_27	PF13463.6	gi|257053135|ref|YP_003130968.1|	-	1.6e-06	28.5	0.0	0.00013	22.4	0.0	2.8	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
MarR	PF01047.22	gi|257053135|ref|YP_003130968.1|	-	0.0002	21.2	0.0	0.0004	20.3	0.0	1.6	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|257053135|ref|YP_003130968.1|	-	0.0022	18.0	0.0	0.014	15.5	0.0	2.3	3	0	0	3	3	3	1	Helix-turn-helix	domain
Penicillinase_R	PF03965.16	gi|257053135|ref|YP_003130968.1|	-	0.065	13.6	0.0	0.12	12.7	0.0	1.4	1	0	0	1	1	1	0	Penicillinase	repressor
TrmB	PF01978.19	gi|257053135|ref|YP_003130968.1|	-	0.15	12.0	0.0	0.59	10.1	0.0	2.1	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
RHH_1	PF01402.21	gi|257053136|ref|YP_003130969.1|	-	3.1e-05	23.7	0.0	4.2e-05	23.3	0.0	1.1	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
HTH_AsnC-type	PF13404.6	gi|257053136|ref|YP_003130969.1|	-	0.0031	17.3	0.0	0.0031	17.3	0.0	1.6	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
DUF2802	PF10975.8	gi|257053136|ref|YP_003130969.1|	-	0.031	14.4	0.1	0.11	12.6	0.0	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2802)
HTH_IclR	PF09339.10	gi|257053136|ref|YP_003130969.1|	-	0.041	13.7	0.0	0.061	13.1	0.0	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
DprA_WH	PF17782.1	gi|257053136|ref|YP_003130969.1|	-	0.077	13.1	0.1	0.1	12.8	0.1	1.2	1	0	0	1	1	1	0	DprA	winged	helix	domain
IF2_N	PF04760.15	gi|257053136|ref|YP_003130969.1|	-	0.15	11.9	0.0	0.21	11.4	0.0	1.2	1	0	0	1	1	1	0	Translation	initiation	factor	IF-2,	N-terminal	region
RHH_1	PF01402.21	gi|257053137|ref|YP_003130970.1|	-	0.00086	19.2	0.9	0.0011	18.9	0.9	1.2	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
tRNA-synt_1c	PF00749.21	gi|257053138|ref|YP_003130971.1|	-	2.2e-57	194.4	0.0	2.7e-57	194.1	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(E	and	Q),	catalytic	domain
tRNA-synt_1c_C	PF03950.18	gi|257053138|ref|YP_003130971.1|	-	4.4e-18	65.8	0.0	1.3e-17	64.2	0.0	1.8	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(E	and	Q),	anti-codon	binding	domain
Meth_synt_1	PF08267.12	gi|257053138|ref|YP_003130971.1|	-	0.022	14.3	0.1	0.035	13.6	0.1	1.2	1	0	0	1	1	1	0	Cobalamin-independent	synthase,	N-terminal	domain
DUF3397	PF11877.8	gi|257053139|ref|YP_003130972.1|	-	0.001	19.3	2.0	0.001	19.3	2.0	1.5	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF3397)
Sec61_beta	PF03911.16	gi|257053139|ref|YP_003130972.1|	-	0.036	14.1	1.8	1.5	8.9	0.0	2.5	2	0	0	2	2	2	0	Sec61beta	family
ABC_trans_CmpB	PF06541.11	gi|257053139|ref|YP_003130972.1|	-	0.045	14.0	0.7	0.08	13.2	0.7	1.3	1	0	0	1	1	1	0	Putative	ABC-transporter	type	IV
CbtA	PF09490.10	gi|257053139|ref|YP_003130972.1|	-	0.073	12.8	0.0	0.12	12.2	0.0	1.4	1	1	0	1	1	1	0	Probable	cobalt	transporter	subunit	(CbtA)
DUF5113	PF17140.4	gi|257053140|ref|YP_003130973.1|	-	0.17	11.7	0.0	0.29	10.9	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5113)
Cuticle_2	PF08184.11	gi|257053141|ref|YP_003130974.1|	-	0.053	13.5	0.0	0.07	13.1	0.0	1.2	1	0	0	1	1	1	0	Cuticle	protein	7	isoform	family
PMSR	PF01625.21	gi|257053142|ref|YP_003130975.1|	-	2.5e-65	219.3	1.5	2.9e-65	219.1	1.5	1.0	1	0	0	1	1	1	1	Peptide	methionine	sulfoxide	reductase
Pyr_redox_2	PF07992.14	gi|257053143|ref|YP_003130976.1|	-	8.1e-38	130.3	1.4	9.9e-38	130.0	1.4	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|257053143|ref|YP_003130976.1|	-	1.7e-14	53.8	0.1	1.6e-10	40.7	0.0	2.9	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|257053143|ref|YP_003130976.1|	-	6.6e-13	49.0	0.3	8.9e-12	45.4	0.1	2.4	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|257053143|ref|YP_003130976.1|	-	0.00051	18.9	0.1	0.51	9.0	0.0	3.2	4	0	0	4	4	4	2	HI0933-like	protein
FAD_binding_2	PF00890.24	gi|257053143|ref|YP_003130976.1|	-	0.00073	18.7	3.2	0.0052	15.9	0.0	3.1	2	1	0	3	3	3	1	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|257053143|ref|YP_003130976.1|	-	0.0019	18.4	0.2	0.009	16.2	0.0	2.3	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
FAD_oxidored	PF12831.7	gi|257053143|ref|YP_003130976.1|	-	0.0041	16.5	0.1	0.0095	15.3	0.1	1.6	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
NAD_binding_7	PF13241.6	gi|257053143|ref|YP_003130976.1|	-	0.0043	17.5	0.0	0.036	14.5	0.0	2.3	2	0	0	2	2	2	1	Putative	NAD(P)-binding
Trp_halogenase	PF04820.14	gi|257053143|ref|YP_003130976.1|	-	0.14	10.9	1.6	4.7	5.9	0.1	2.7	3	0	0	3	3	3	0	Tryptophan	halogenase
BCCT	PF02028.17	gi|257053144|ref|YP_003130977.1|	-	2.2e-161	537.6	40.4	2.5e-161	537.4	40.4	1.0	1	0	0	1	1	1	1	BCCT,	betaine/carnitine/choline	family	transporter
PAS_3	PF08447.12	gi|257053145|ref|YP_003130978.1|	-	6.2e-31	106.5	0.6	4.3e-20	71.8	0.1	2.5	2	0	0	2	2	2	2	PAS	fold
HATPase_c	PF02518.26	gi|257053145|ref|YP_003130978.1|	-	1.2e-15	57.9	0.0	2.9e-15	56.8	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.6	gi|257053145|ref|YP_003130978.1|	-	6.8e-09	35.8	1.9	4.4e-08	33.1	0.2	3.0	3	1	1	4	4	4	1	Histidine	kinase-like	ATPase	domain
PAS_9	PF13426.7	gi|257053145|ref|YP_003130978.1|	-	8.8e-09	35.6	0.1	0.00086	19.5	0.0	2.6	2	0	0	2	2	2	2	PAS	domain
PAS_4	PF08448.10	gi|257053145|ref|YP_003130978.1|	-	9e-08	32.4	1.4	0.00026	21.2	0.1	2.5	2	0	0	2	2	2	2	PAS	fold
PAS	PF00989.25	gi|257053145|ref|YP_003130978.1|	-	3.2e-06	27.1	0.0	0.00011	22.1	0.0	2.5	2	0	0	2	2	2	1	PAS	fold
HATPase_c_5	PF14501.6	gi|257053145|ref|YP_003130978.1|	-	0.00011	22.1	0.0	0.00024	21.0	0.0	1.5	1	0	0	1	1	1	1	GHKL	domain
PAS_11	PF14598.6	gi|257053145|ref|YP_003130978.1|	-	0.00087	19.4	0.0	0.0067	16.5	0.0	2.2	2	0	0	2	2	2	1	PAS	domain
HisKA_4TM	PF16926.5	gi|257053145|ref|YP_003130978.1|	-	0.0039	16.8	0.1	0.0078	15.8	0.1	1.5	1	0	0	1	1	1	1	Archaeal	4TM	region	of	histidine	kinase
HisKA	PF00512.25	gi|257053145|ref|YP_003130978.1|	-	0.0046	17.0	0.5	0.01	15.9	0.5	1.6	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_8	PF13188.7	gi|257053145|ref|YP_003130978.1|	-	0.0077	16.2	0.1	0.59	10.2	0.0	2.7	2	0	0	2	2	2	1	PAS	domain
HTH_10	PF04967.12	gi|257053146|ref|YP_003130979.1|	-	3.6e-22	77.9	0.2	7.5e-22	76.9	0.2	1.6	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Response_reg	PF00072.24	gi|257053146|ref|YP_003130979.1|	-	1.1e-20	73.8	0.1	2.5e-20	72.7	0.1	1.6	1	0	0	1	1	1	1	Response	regulator	receiver	domain
BAT	PF15915.5	gi|257053146|ref|YP_003130979.1|	-	1.2e-16	61.0	9.6	1.2e-16	61.0	9.6	3.3	4	1	0	4	4	3	1	GAF	and	HTH_10	associated	domain
GAF_2	PF13185.6	gi|257053146|ref|YP_003130979.1|	-	8.9e-16	58.4	3.5	1.4e-15	57.8	0.5	2.6	2	0	0	2	2	2	1	GAF	domain
PAS	PF00989.25	gi|257053146|ref|YP_003130979.1|	-	1.8e-13	50.5	0.0	4.4e-13	49.2	0.0	1.7	1	0	0	1	1	1	1	PAS	fold
PAS_4	PF08448.10	gi|257053146|ref|YP_003130979.1|	-	7.8e-10	39.0	0.5	3.7e-09	36.8	0.5	2.3	1	0	0	1	1	1	1	PAS	fold
PAS_3	PF08447.12	gi|257053146|ref|YP_003130979.1|	-	1.1e-09	38.4	0.0	2.7e-09	37.2	0.0	1.7	1	0	0	1	1	1	1	PAS	fold
PAS_9	PF13426.7	gi|257053146|ref|YP_003130979.1|	-	5.3e-09	36.3	0.0	1.9e-08	34.5	0.0	2.0	2	0	0	2	2	1	1	PAS	domain
PAS_8	PF13188.7	gi|257053146|ref|YP_003130979.1|	-	4.2e-08	33.0	0.1	3.1e-07	30.3	0.0	2.5	2	0	0	2	2	2	1	PAS	domain
GAF_3	PF13492.6	gi|257053146|ref|YP_003130979.1|	-	2.8e-07	30.9	0.0	8.8e-07	29.3	0.0	1.8	1	0	0	1	1	1	1	GAF	domain
GAF	PF01590.26	gi|257053146|ref|YP_003130979.1|	-	1.2e-06	29.2	0.1	4.2e-06	27.4	0.1	2.1	1	1	0	1	1	1	1	GAF	domain
Sigma70_r4	PF04545.16	gi|257053146|ref|YP_003130979.1|	-	7.4e-05	22.2	0.1	0.00022	20.7	0.1	1.9	1	1	0	1	1	1	1	Sigma-70,	region	4
Sigma70_r4_2	PF08281.12	gi|257053146|ref|YP_003130979.1|	-	0.014	15.0	0.1	0.17	11.5	0.1	2.7	2	1	0	2	2	2	0	Sigma-70,	region	4
HTH_20	PF12840.7	gi|257053146|ref|YP_003130979.1|	-	0.017	15.1	0.1	0.058	13.5	0.1	1.9	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF3798	PF12683.7	gi|257053146|ref|YP_003130979.1|	-	0.024	14.1	0.3	0.09	12.2	0.1	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3798)
CPSase_L_D2	PF02786.17	gi|257053146|ref|YP_003130979.1|	-	0.026	14.0	0.2	0.075	12.5	0.0	1.8	2	0	0	2	2	2	0	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
MarR_2	PF12802.7	gi|257053146|ref|YP_003130979.1|	-	0.035	14.0	1.3	0.11	12.4	0.2	2.5	2	0	0	2	2	2	0	MarR	family
HTH_38	PF13936.6	gi|257053146|ref|YP_003130979.1|	-	0.05	13.4	0.1	0.22	11.3	0.1	2.1	1	1	0	1	1	1	0	Helix-turn-helix	domain
HTH_23	PF13384.6	gi|257053146|ref|YP_003130979.1|	-	0.05	13.4	0.0	0.14	12.0	0.0	1.7	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_40	PF14493.6	gi|257053146|ref|YP_003130979.1|	-	0.11	13.0	0.1	0.52	10.8	0.0	2.2	2	0	0	2	2	2	0	Helix-turn-helix	domain
DUF3460	PF11943.8	gi|257053146|ref|YP_003130979.1|	-	0.14	12.5	0.2	0.63	10.3	0.5	2.1	2	0	0	2	2	1	0	Protein	of	unknown	function	(DUF3460)
Glug	PF07581.12	gi|257053147|ref|YP_003130980.1|	-	1.1e-69	226.3	507.9	0.00011	22.3	6.6	51.0	49	3	3	52	52	52	45	The	GLUG	motif
DUF1641	PF07849.11	gi|257053148|ref|YP_003130981.1|	-	1.2e-15	57.1	1.7	1.8e-14	53.3	0.1	2.5	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1641)
Rod-binding	PF10135.9	gi|257053148|ref|YP_003130981.1|	-	0.11	13.1	2.9	1.6	9.4	0.5	2.8	2	0	0	2	2	2	0	Rod	binding	protein
Pyr_redox_2	PF07992.14	gi|257053149|ref|YP_003130982.1|	-	3.6e-22	79.0	0.0	1.4e-21	77.0	0.0	1.7	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.6	gi|257053149|ref|YP_003130982.1|	-	2.6e-05	24.3	1.6	0.055	13.4	0.1	2.5	1	1	1	2	2	2	2	FAD-NAD(P)-binding
Lycopene_cycl	PF05834.12	gi|257053149|ref|YP_003130982.1|	-	0.00058	19.0	0.3	0.17	10.9	0.5	2.3	1	1	1	2	2	2	2	Lycopene	cyclase	protein
DAO	PF01266.24	gi|257053149|ref|YP_003130982.1|	-	0.0038	16.9	0.7	2.2	7.8	0.8	2.2	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|257053149|ref|YP_003130982.1|	-	0.011	14.5	0.2	7.1	5.2	0.0	3.0	3	0	0	3	3	3	0	HI0933-like	protein
GIDA	PF01134.22	gi|257053149|ref|YP_003130982.1|	-	0.16	11.0	0.0	8	5.4	0.0	2.5	2	0	0	2	2	2	0	Glucose	inhibited	division	protein	A
Pyr_redox	PF00070.27	gi|257053149|ref|YP_003130982.1|	-	0.26	11.9	0.9	3.3	8.3	0.3	2.6	3	0	0	3	3	3	0	Pyridine	nucleotide-disulphide	oxidoreductase
TusA	PF01206.17	gi|257053150|ref|YP_003130983.1|	-	3.3e-21	74.9	0.0	3.6e-21	74.8	0.0	1.0	1	0	0	1	1	1	1	Sulfurtransferase	TusA
DrsE_2	PF13686.6	gi|257053151|ref|YP_003130984.1|	-	1.3e-11	44.6	0.3	2.1e-05	24.5	0.1	2.0	1	1	1	2	2	2	2	DsrE/DsrF/DrsH-like	family
EF-hand_8	PF13833.6	gi|257053151|ref|YP_003130984.1|	-	0.015	15.1	0.3	0.028	14.3	0.3	1.5	1	0	0	1	1	1	0	EF-hand	domain	pair
MgtE	PF01769.16	gi|257053152|ref|YP_003130985.1|	-	1.8e-18	67.1	6.7	1.8e-18	67.1	6.7	1.7	2	0	0	2	2	2	1	Divalent	cation	transporter
MgtE	PF01769.16	gi|257053153|ref|YP_003130986.1|	-	9.6e-21	74.4	13.1	9.6e-21	74.4	13.1	1.4	2	0	0	2	2	2	1	Divalent	cation	transporter
TetR_C_14	PF17754.1	gi|257053153|ref|YP_003130986.1|	-	0.02	14.8	0.6	0.02	14.8	0.6	2.2	3	0	0	3	3	3	0	MftR	C-terminal	domain
HAD_2	PF13419.6	gi|257053154|ref|YP_003130987.1|	-	2.5e-22	79.8	0.0	3.1e-22	79.5	0.0	1.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|257053154|ref|YP_003130987.1|	-	1.7e-15	57.9	3.5	2.3e-15	57.5	3.5	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|257053154|ref|YP_003130987.1|	-	2.9e-11	43.3	1.6	6.2e-11	42.2	0.1	2.3	2	1	1	3	3	3	1	HAD-hyrolase-like
HAD	PF12710.7	gi|257053154|ref|YP_003130987.1|	-	1.9e-05	25.2	4.8	2.6e-05	24.7	4.8	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
PHP_C	PF13263.6	gi|257053154|ref|YP_003130987.1|	-	0.014	15.1	0.4	7.6	6.4	0.1	2.6	2	0	0	2	2	2	0	PHP-associated
Hydrolase_3	PF08282.12	gi|257053154|ref|YP_003130987.1|	-	0.074	12.8	0.1	3.5	7.3	0.0	2.2	2	0	0	2	2	2	0	haloacid	dehalogenase-like	hydrolase
DUF3377	PF11857.8	gi|257053155|ref|YP_003130988.1|	-	0.79	9.7	0.1	0.79	9.7	0.1	2.4	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF3377)
TssN	PF17555.2	gi|257053155|ref|YP_003130988.1|	-	1.4	8.2	9.4	0.67	9.3	1.0	2.5	2	1	1	3	3	3	0	Type	VI	secretion	system,	TssN
SUR7	PF06687.12	gi|257053155|ref|YP_003130988.1|	-	1.7	8.2	11.4	0.22	11.1	6.0	1.9	1	1	1	2	2	2	0	SUR7/PalI	family
RNA_binding	PF01877.17	gi|257053157|ref|YP_003130990.1|	-	2.6e-10	40.6	0.1	4.8e-09	36.5	0.1	2.0	1	1	0	1	1	1	1	RNA	binding
DUF1949	PF09186.11	gi|257053157|ref|YP_003130990.1|	-	0.065	13.1	1.0	14	5.7	0.5	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1949)
P22_CoatProtein	PF11651.8	gi|257053157|ref|YP_003130990.1|	-	0.074	11.6	0.0	0.092	11.3	0.0	1.2	1	0	0	1	1	1	0	P22	coat	protein	-	gene	protein	5
AAA_17	PF13207.6	gi|257053158|ref|YP_003130991.1|	-	5e-14	52.9	0.0	7.2e-14	52.4	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_18	PF13238.6	gi|257053158|ref|YP_003130991.1|	-	2.8e-10	40.8	0.0	4.1e-10	40.3	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|257053158|ref|YP_003130991.1|	-	1.9e-05	24.8	0.0	3e-05	24.2	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
PEP-utilizers	PF00391.23	gi|257053158|ref|YP_003130991.1|	-	0.0084	15.8	0.3	0.021	14.6	0.3	1.8	1	1	0	1	1	1	1	PEP-utilising	enzyme,	mobile	domain
ADK	PF00406.22	gi|257053158|ref|YP_003130991.1|	-	0.078	13.1	0.0	0.085	13.0	0.0	1.3	1	1	0	1	1	1	0	Adenylate	kinase
Trp_oprn_chp	PF09534.10	gi|257053159|ref|YP_003130992.1|	-	0.068	13.0	0.8	0.077	12.8	0.8	1.1	1	0	0	1	1	1	0	Tryptophan-associated	transmembrane	protein	(Trp_oprn_chp)
DUF2244	PF10003.9	gi|257053159|ref|YP_003130992.1|	-	0.093	12.4	0.0	0.099	12.3	0.0	1.0	1	0	0	1	1	1	0	Integral	membrane	protein	(DUF2244)
PhoU_div	PF01865.16	gi|257053160|ref|YP_003130993.1|	-	4.8e-17	62.0	3.9	1.9e-16	60.1	3.9	1.8	1	1	0	1	1	1	1	Protein	of	unknown	function	DUF47
DUF1993	PF09351.10	gi|257053160|ref|YP_003130993.1|	-	0.028	14.6	0.1	0.15	12.2	0.1	2.1	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF1993)
Imm30	PF15565.6	gi|257053160|ref|YP_003130993.1|	-	0.03	14.4	0.1	3.2	7.9	0.1	2.8	2	1	0	2	2	2	0	Immunity	protein	30
DUF948	PF06103.11	gi|257053160|ref|YP_003130993.1|	-	0.23	11.7	1.6	21	5.4	0.0	3.4	2	1	2	4	4	4	0	Bacterial	protein	of	unknown	function	(DUF948)
FG-GAP_2	PF14312.6	gi|257053161|ref|YP_003130994.1|	-	4.3e-21	74.9	25.4	4.1e-07	30.1	1.1	6.7	7	0	0	7	7	7	5	FG-GAP	repeat
PQQ_3	PF13570.6	gi|257053161|ref|YP_003130994.1|	-	0.002	18.6	24.9	2.1	8.9	0.5	6.3	6	0	0	6	6	6	4	PQQ-like	domain
AnfO_nitrog	PF09582.10	gi|257053161|ref|YP_003130994.1|	-	0.021	14.1	0.0	19	4.6	0.0	3.3	3	0	0	3	3	3	0	Iron	only	nitrogenase	protein	AnfO	(AnfO_nitrog)
Rhodanese	PF00581.20	gi|257053162|ref|YP_003130995.1|	-	1.8e-35	121.7	0.3	1.8e-18	67.0	0.0	2.1	2	0	0	2	2	2	2	Rhodanese-like	domain
Rhodanese	PF00581.20	gi|257053163|ref|YP_003130996.1|	-	9.2e-38	129.0	0.0	6.5e-19	68.4	0.0	2.0	2	0	0	2	2	2	2	Rhodanese-like	domain
AI-2E_transport	PF01594.16	gi|257053164|ref|YP_003130997.1|	-	3e-27	95.6	33.9	3.9e-26	92.0	33.9	1.9	1	1	0	1	1	1	1	AI-2E	family	transporter
AC_N	PF16214.5	gi|257053164|ref|YP_003130997.1|	-	0.32	10.1	0.7	0.66	9.0	0.7	1.5	1	0	0	1	1	1	0	Adenylyl	cyclase	N-terminal	extracellular	and	transmembrane	region
2Fe-2S_thioredx	PF01257.19	gi|257053165|ref|YP_003130998.1|	-	1.5e-46	157.8	0.1	1.8e-46	157.6	0.1	1.1	1	0	0	1	1	1	1	Thioredoxin-like	[2Fe-2S]	ferredoxin
DUF1636	PF07845.11	gi|257053165|ref|YP_003130998.1|	-	0.042	14.3	0.2	0.072	13.5	0.2	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1636)
Complex1_51K	PF01512.17	gi|257053166|ref|YP_003130999.1|	-	3.6e-51	173.0	0.0	8.2e-51	171.9	0.0	1.6	2	0	0	2	2	2	1	Respiratory-chain	NADH	dehydrogenase	51	Kd	subunit
NADH_4Fe-4S	PF10589.9	gi|257053166|ref|YP_003130999.1|	-	1.2e-28	99.0	0.0	1.2e-28	99.0	0.0	2.5	2	0	0	2	2	1	1	NADH-ubiquinone	oxidoreductase-F	iron-sulfur	binding	region
Fer4	PF00037.27	gi|257053166|ref|YP_003130999.1|	-	1.6e-11	43.5	27.5	6.4e-07	28.9	5.7	3.3	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|257053166|ref|YP_003130999.1|	-	1.3e-10	41.2	11.3	1.3e-10	41.2	11.3	2.5	3	0	0	3	3	2	1	4Fe-4S	dicluster	domain
SLBB	PF10531.9	gi|257053166|ref|YP_003130999.1|	-	8.5e-09	35.2	3.1	2.2e-08	33.8	3.1	1.8	1	0	0	1	1	1	1	SLBB	domain
Fer4_9	PF13187.6	gi|257053166|ref|YP_003130999.1|	-	1e-08	35.2	25.8	2e-07	31.1	12.3	2.9	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|257053166|ref|YP_003130999.1|	-	2.3e-08	34.5	12.2	2.3e-08	34.5	12.2	2.5	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|257053166|ref|YP_003130999.1|	-	3e-06	27.3	14.4	3e-06	27.3	14.4	3.1	2	1	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|257053166|ref|YP_003130999.1|	-	0.00015	21.7	24.3	0.0074	16.3	4.8	3.9	4	0	0	4	4	3	2	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|257053166|ref|YP_003130999.1|	-	0.001	20.0	20.7	0.0014	19.5	1.7	3.1	3	0	0	3	3	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_4	PF12800.7	gi|257053166|ref|YP_003130999.1|	-	0.0022	18.4	2.7	0.0022	18.4	2.7	3.3	3	0	0	3	3	2	2	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|257053166|ref|YP_003130999.1|	-	0.0025	18.3	16.8	0.019	15.5	2.1	3.6	4	0	0	4	4	3	2	4Fe-4S	dicluster	domain
2Fe-2S_thioredx	PF01257.19	gi|257053166|ref|YP_003130999.1|	-	0.003	17.4	0.0	0.0059	16.5	0.0	1.5	1	0	0	1	1	1	1	Thioredoxin-like	[2Fe-2S]	ferredoxin
Fer4_6	PF12837.7	gi|257053166|ref|YP_003130999.1|	-	0.0037	17.3	27.3	0.015	15.4	5.8	3.6	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_22	PF17179.4	gi|257053166|ref|YP_003130999.1|	-	0.0053	17.6	8.4	0.15	12.9	1.2	2.6	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|257053166|ref|YP_003130999.1|	-	0.0092	16.9	4.6	0.0092	16.9	4.6	3.2	3	0	0	3	3	2	2	4Fe-4S	binding	domain
DUF1636	PF07845.11	gi|257053166|ref|YP_003130999.1|	-	0.035	14.5	0.0	0.081	13.4	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1636)
Fer4_15	PF13459.6	gi|257053166|ref|YP_003130999.1|	-	0.15	12.8	18.2	0.81	10.5	1.8	4.0	3	0	0	3	3	3	0	4Fe-4S	single	cluster	domain
Fer4_8	PF13183.6	gi|257053166|ref|YP_003130999.1|	-	0.19	12.2	19.3	0.43	11.1	1.2	2.9	2	1	0	2	2	2	0	4Fe-4S	dicluster	domain
DUF5332	PF17266.2	gi|257053166|ref|YP_003130999.1|	-	0.24	11.1	0.0	0.24	11.1	0.0	2.1	2	0	0	2	2	1	0	Family	of	unknown	function	(DUF5332)
Fer4_18	PF13746.6	gi|257053166|ref|YP_003130999.1|	-	0.83	9.9	15.0	3.2	8.0	14.2	2.1	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
zf-trcl	PF13451.6	gi|257053166|ref|YP_003130999.1|	-	1.2	9.1	3.9	0.34	10.9	0.2	2.0	2	0	0	2	2	1	0	Probable	zinc-ribbon	domain
ETF_QO	PF05187.13	gi|257053166|ref|YP_003130999.1|	-	5.4	7.2	5.6	0.87	9.7	1.3	1.9	1	1	1	2	2	2	0	Electron	transfer	flavoprotein-ubiquinone	oxidoreductase,	4Fe-4S
Fer2_4	PF13510.6	gi|257053167|ref|YP_003131000.1|	-	9.7e-21	73.6	2.2	9.7e-21	73.6	2.2	2.9	2	0	0	2	2	2	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Molybdopterin	PF00384.22	gi|257053167|ref|YP_003131000.1|	-	1.3e-11	44.1	0.1	3.3e-09	36.2	0.1	2.3	2	0	0	2	2	2	2	Molybdopterin	oxidoreductase
NADH-G_4Fe-4S_3	PF10588.9	gi|257053167|ref|YP_003131000.1|	-	1.6e-09	37.2	1.1	1.6e-09	37.2	1.1	2.4	3	0	0	3	3	1	1	NADH-ubiquinone	oxidoreductase-G	iron-sulfur	binding	region
Molybdop_Fe4S4	PF04879.16	gi|257053167|ref|YP_003131000.1|	-	2.7e-07	30.5	1.0	2.7e-07	30.5	1.0	2.5	2	0	0	2	2	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
Fer4_8	PF13183.6	gi|257053167|ref|YP_003131000.1|	-	5.3e-07	30.0	5.2	5.3e-07	30.0	5.2	3.5	3	0	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|257053167|ref|YP_003131000.1|	-	6.5e-07	29.4	8.0	6.5e-07	29.4	8.0	3.7	2	1	1	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|257053167|ref|YP_003131000.1|	-	2.8e-06	27.4	6.9	2.8e-06	27.4	6.9	2.8	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|257053167|ref|YP_003131000.1|	-	3.3e-06	26.7	11.7	5.8e-05	22.7	1.5	3.5	4	0	0	4	4	3	2	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|257053167|ref|YP_003131000.1|	-	1.2e-05	25.1	11.5	0.00012	22.0	2.3	4.2	5	0	0	5	5	4	2	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|257053167|ref|YP_003131000.1|	-	6.7e-05	22.9	12.8	6.7e-05	22.9	12.8	3.4	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|257053167|ref|YP_003131000.1|	-	0.0006	20.4	31.8	0.0045	17.5	10.3	3.5	2	1	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|257053167|ref|YP_003131000.1|	-	0.0012	18.8	14.2	0.0026	17.8	2.3	4.2	4	0	0	4	4	4	2	4Fe-4S	binding	domain
Fer4_15	PF13459.6	gi|257053167|ref|YP_003131000.1|	-	0.0016	19.1	2.1	0.0016	19.1	2.1	5.2	5	2	1	6	6	6	1	4Fe-4S	single	cluster	domain
Fer4_4	PF12800.7	gi|257053167|ref|YP_003131000.1|	-	0.0023	18.3	1.2	0.0023	18.3	1.2	3.6	4	0	0	4	4	2	2	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|257053167|ref|YP_003131000.1|	-	0.12	13.3	20.3	0.86	10.6	9.0	3.5	3	1	0	3	3	3	0	4Fe-4S	double	cluster	binding	domain
DUF348	PF03990.14	gi|257053167|ref|YP_003131000.1|	-	0.12	12.1	11.4	0.32	10.8	0.1	4.3	5	0	0	5	5	5	0	G5-linked-Ubiquitin-like	domain
Fer4_13	PF13370.6	gi|257053167|ref|YP_003131000.1|	-	0.32	11.6	18.3	0.14	12.7	1.9	3.3	3	0	0	3	3	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_18	PF13746.6	gi|257053167|ref|YP_003131000.1|	-	0.33	11.2	16.7	1.3	9.2	1.4	3.2	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|257053167|ref|YP_003131000.1|	-	0.99	10.0	30.2	0.13	12.9	4.8	3.8	3	1	1	4	4	3	0	4Fe-4S	dicluster	domain
Oxidored_q6	PF01058.22	gi|257053168|ref|YP_003131001.1|	-	1.1e-26	93.3	0.1	1.3e-26	93.0	0.1	1.1	1	0	0	1	1	1	1	NADH	ubiquinone	oxidoreductase,	20	Kd	subunit
Urease_alpha	PF00449.20	gi|257053168|ref|YP_003131001.1|	-	0.047	14.0	0.4	0.12	12.7	0.4	1.6	1	1	0	1	1	1	0	Urease	alpha-subunit,	N-terminal	domain
NiFeSe_Hases	PF00374.19	gi|257053169|ref|YP_003131002.1|	-	1.8e-41	142.6	0.0	4.9e-19	68.6	0.0	3.0	2	1	0	3	3	3	3	Nickel-dependent	hydrogenase
HycI	PF01750.18	gi|257053170|ref|YP_003131003.1|	-	5.9e-09	35.8	0.0	7e-09	35.6	0.0	1.1	1	0	0	1	1	1	1	Hydrogenase	maturation	protease
DUF2061	PF09834.9	gi|257053171|ref|YP_003131004.1|	-	8.7e-17	61.4	4.3	1e-16	61.1	4.3	1.1	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2061)
HrcA_DNA-bdg	PF03444.15	gi|257053172|ref|YP_003131005.1|	-	1.3e-25	88.8	0.0	1.8e-25	88.3	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
Rrf2	PF02082.20	gi|257053172|ref|YP_003131005.1|	-	5.1e-08	33.1	0.0	8.7e-08	32.4	0.0	1.4	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_11	PF08279.12	gi|257053172|ref|YP_003131005.1|	-	6.8e-06	25.9	0.0	1e-05	25.3	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
TrmB	PF01978.19	gi|257053172|ref|YP_003131005.1|	-	0.0032	17.3	0.0	0.0053	16.6	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.6	gi|257053172|ref|YP_003131005.1|	-	0.006	17.1	0.0	0.011	16.2	0.0	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
Fe_dep_repress	PF01325.19	gi|257053172|ref|YP_003131005.1|	-	0.013	15.6	0.1	0.026	14.7	0.1	1.4	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR_2	PF12802.7	gi|257053172|ref|YP_003131005.1|	-	0.024	14.5	0.0	0.05	13.5	0.0	1.6	1	0	0	1	1	1	0	MarR	family
HTH_24	PF13412.6	gi|257053172|ref|YP_003131005.1|	-	0.04	13.5	0.0	0.073	12.6	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|257053172|ref|YP_003131005.1|	-	0.1	12.7	0.0	0.19	11.8	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
Epimerase	PF01370.21	gi|257053173|ref|YP_003131006.1|	-	3.1e-21	75.9	1.1	9.3e-19	67.8	1.1	2.2	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|257053173|ref|YP_003131006.1|	-	4.8e-12	45.9	1.7	5.8e-09	35.8	0.0	2.1	1	1	1	2	2	2	2	GDP-mannose	4,6	dehydratase
RmlD_sub_bind	PF04321.17	gi|257053173|ref|YP_003131006.1|	-	3.1e-11	42.9	0.7	2.2e-10	40.1	0.7	2.1	1	1	0	1	1	1	1	RmlD	substrate	binding	domain
NAD_binding_10	PF13460.6	gi|257053173|ref|YP_003131006.1|	-	1.2e-10	41.6	0.1	6.6e-10	39.2	0.1	2.1	1	1	0	1	1	1	1	NAD(P)H-binding
3Beta_HSD	PF01073.19	gi|257053173|ref|YP_003131006.1|	-	7.6e-06	25.1	0.2	0.0002	20.5	0.2	2.1	1	1	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NmrA	PF05368.13	gi|257053173|ref|YP_003131006.1|	-	0.0013	18.4	0.0	0.0089	15.6	0.0	2.1	2	0	0	2	2	2	1	NmrA-like	family
Glyco_transf_4	PF13439.6	gi|257053173|ref|YP_003131006.1|	-	0.0017	18.4	1.4	0.13	12.2	0.1	3.1	1	1	1	3	3	3	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|257053173|ref|YP_003131006.1|	-	0.0092	16.4	1.6	0.75	10.2	1.6	2.7	1	1	0	1	1	1	1	Glycosyl	transferase	4-like	domain
F420_oxidored	PF03807.17	gi|257053173|ref|YP_003131006.1|	-	0.023	15.3	0.0	0.043	14.4	0.0	1.6	1	0	0	1	1	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
CbiJ	PF02571.14	gi|257053173|ref|YP_003131006.1|	-	0.036	13.5	0.1	0.056	12.9	0.1	1.2	1	0	0	1	1	1	0	Precorrin-6x	reductase	CbiJ/CobK
NAD_binding_4	PF07993.12	gi|257053173|ref|YP_003131006.1|	-	0.044	12.9	0.1	0.22	10.6	0.0	1.9	1	1	1	2	2	2	0	Male	sterility	protein
DUF2554	PF10829.8	gi|257053173|ref|YP_003131006.1|	-	0.061	13.7	0.0	0.23	11.9	0.0	2.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2554)
GST_N_3	PF13417.6	gi|257053174|ref|YP_003131007.1|	-	1.3e-14	54.4	0.0	1.5e-14	54.2	0.0	1.1	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
GST_N_2	PF13409.6	gi|257053174|ref|YP_003131007.1|	-	5.8e-12	45.7	0.0	6.9e-12	45.5	0.0	1.1	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
Glutaredoxin	PF00462.24	gi|257053174|ref|YP_003131007.1|	-	2.2e-11	43.8	0.1	3.3e-11	43.2	0.1	1.3	1	0	0	1	1	1	1	Glutaredoxin
GST_N	PF02798.20	gi|257053174|ref|YP_003131007.1|	-	0.0001	22.6	0.0	0.00014	22.1	0.0	1.2	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
DUF836	PF05768.14	gi|257053174|ref|YP_003131007.1|	-	0.026	14.9	0.1	0.031	14.7	0.1	1.4	1	1	0	1	1	1	0	Glutaredoxin-like	domain	(DUF836)
Thioredoxin_2	PF13098.6	gi|257053174|ref|YP_003131007.1|	-	0.036	14.5	0.0	0.039	14.4	0.0	1.2	1	0	0	1	1	1	0	Thioredoxin-like	domain
AhpC-TSA	PF00578.21	gi|257053175|ref|YP_003131008.1|	-	4e-21	75.2	0.0	4.8e-21	75.0	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|257053175|ref|YP_003131008.1|	-	5e-08	32.8	0.0	1.1e-07	31.6	0.0	1.5	1	1	0	1	1	1	1	Redoxin
AhpC-TSA_2	PF13911.6	gi|257053175|ref|YP_003131008.1|	-	0.05	13.7	0.0	0.24	11.5	0.0	1.8	1	1	1	2	2	2	0	AhpC/TSA	antioxidant	enzyme
Thioredoxin_3	PF13192.6	gi|257053177|ref|YP_003131010.1|	-	1.1e-19	70.2	0.5	6.8e-14	51.7	0.1	2.6	2	1	0	2	2	2	2	Thioredoxin	domain
Glutaredoxin	PF00462.24	gi|257053177|ref|YP_003131010.1|	-	6.3e-14	51.9	0.0	1.6e-10	41.0	0.0	2.5	2	0	0	2	2	2	2	Glutaredoxin
Thioredoxin_9	PF14595.6	gi|257053177|ref|YP_003131010.1|	-	4.3e-08	33.0	0.0	0.0042	16.9	0.0	2.1	2	0	0	2	2	2	2	Thioredoxin
Thioredoxin_2	PF13098.6	gi|257053177|ref|YP_003131010.1|	-	2.4e-06	28.0	4.0	0.0045	17.4	1.1	3.0	2	1	0	2	2	2	2	Thioredoxin-like	domain
Thioredoxin	PF00085.20	gi|257053177|ref|YP_003131010.1|	-	3.3e-05	23.8	0.1	0.00011	22.2	0.0	1.7	2	0	0	2	2	2	1	Thioredoxin
Thioredoxin_4	PF13462.6	gi|257053177|ref|YP_003131010.1|	-	0.00048	20.3	2.6	0.16	12.1	0.4	3.1	2	1	1	3	3	3	1	Thioredoxin
DUF836	PF05768.14	gi|257053177|ref|YP_003131010.1|	-	0.00092	19.6	0.0	0.3	11.5	0.0	2.4	2	0	0	2	2	2	2	Glutaredoxin-like	domain	(DUF836)
TraF	PF13728.6	gi|257053177|ref|YP_003131010.1|	-	0.0059	16.5	0.0	1.6	8.5	0.0	2.2	2	0	0	2	2	2	2	F	plasmid	transfer	operon	protein
ABC_transp_aux	PF09822.9	gi|257053177|ref|YP_003131010.1|	-	0.0097	15.4	0.0	3.1	7.2	0.0	2.1	2	0	0	2	2	2	2	ABC-type	uncharacterized	transport	system
DSBA	PF01323.20	gi|257053177|ref|YP_003131010.1|	-	0.035	13.9	0.8	0.075	12.8	0.1	1.9	1	1	1	2	2	2	0	DSBA-like	thioredoxin	domain
DUF2757	PF10955.8	gi|257053177|ref|YP_003131010.1|	-	0.11	12.8	0.2	8.8	6.7	0.0	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2757)
Glyco_hydro_2_C	PF02836.17	gi|257053178|ref|YP_003131011.1|	-	3.7e-32	111.6	0.0	2.5e-31	108.9	0.0	2.1	1	1	0	1	1	1	1	Glycosyl	hydrolases	family	2,	TIM	barrel	domain
Glyco_hydro2_C5	PF18565.1	gi|257053178|ref|YP_003131011.1|	-	1.2e-31	108.6	2.7	1.3e-31	108.5	0.6	2.0	2	0	0	2	2	2	1	Glycoside	hydrolase	family	2	C-terminal	domain	5
Glyco_hydro_2_N	PF02837.18	gi|257053178|ref|YP_003131011.1|	-	8e-20	71.4	0.0	1.4e-19	70.6	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	2,	sugar	binding	domain
Glyco_hydro_2	PF00703.21	gi|257053178|ref|YP_003131011.1|	-	1.4e-16	61.1	0.1	4.1e-16	59.6	0.1	1.8	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	2
DUF4982	PF16355.5	gi|257053178|ref|YP_003131011.1|	-	2.4e-14	53.0	0.0	6.2e-14	51.7	0.0	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4982)
Invasin_D3	PF09134.10	gi|257053178|ref|YP_003131011.1|	-	0.00028	21.1	0.8	0.00096	19.4	0.1	2.3	2	0	0	2	2	2	1	Invasin,	domain	3
TerC	PF03741.16	gi|257053179|ref|YP_003131012.1|	-	1.6	8.4	8.6	0.13	11.9	3.2	1.8	1	1	1	2	2	2	0	Integral	membrane	protein	TerC	family
Cpn60_TCP1	PF00118.24	gi|257053180|ref|YP_003131013.1|	-	1.6e-153	511.9	8.1	1.8e-153	511.7	8.1	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
ABC_tran	PF00005.27	gi|257053181|ref|YP_003131014.1|	-	1.2e-26	93.8	0.0	1.7e-26	93.4	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|257053181|ref|YP_003131014.1|	-	1.8e-12	47.6	0.3	3.4e-12	46.7	0.3	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_22	PF13401.6	gi|257053181|ref|YP_003131014.1|	-	5.5e-05	23.5	1.6	0.0052	17.0	1.6	2.3	1	1	0	1	1	1	1	AAA	domain
NB-ARC	PF00931.22	gi|257053181|ref|YP_003131014.1|	-	0.013	14.7	0.0	0.019	14.1	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
AAA_21	PF13304.6	gi|257053181|ref|YP_003131014.1|	-	0.014	15.2	0.3	0.22	11.3	0.0	2.2	1	1	1	2	2	2	0	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
Yop-YscD_cpl	PF16697.5	gi|257053181|ref|YP_003131014.1|	-	0.032	14.5	0.0	0.092	13.1	0.0	1.8	1	0	0	1	1	1	0	Inner	membrane	component	of	T3SS,	cytoplasmic	domain
Rad17	PF03215.15	gi|257053181|ref|YP_003131014.1|	-	0.038	13.9	0.0	0.082	12.8	0.0	1.4	1	0	0	1	1	1	0	Rad17	P-loop	domain
AAA_16	PF13191.6	gi|257053181|ref|YP_003131014.1|	-	0.042	14.2	0.4	0.075	13.4	0.4	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_7	PF12775.7	gi|257053181|ref|YP_003131014.1|	-	0.055	13.0	0.0	2.7	7.5	0.0	2.1	2	0	0	2	2	2	0	P-loop	containing	dynein	motor	region
RsgA_GTPase	PF03193.16	gi|257053181|ref|YP_003131014.1|	-	0.058	13.3	0.0	0.097	12.6	0.0	1.3	1	0	0	1	1	1	0	RsgA	GTPase
AAA_29	PF13555.6	gi|257053181|ref|YP_003131014.1|	-	0.067	12.9	0.0	0.11	12.3	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
PduV-EutP	PF10662.9	gi|257053181|ref|YP_003131014.1|	-	0.17	11.6	0.0	0.27	10.9	0.0	1.3	1	0	0	1	1	1	0	Ethanolamine	utilisation	-	propanediol	utilisation
ABC_tran	PF00005.27	gi|257053182|ref|YP_003131015.1|	-	1.2e-20	74.4	0.0	2e-20	73.7	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|257053182|ref|YP_003131015.1|	-	7.8e-19	68.0	0.1	1.4e-18	67.1	0.1	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|257053182|ref|YP_003131015.1|	-	8.4e-06	25.8	4.0	1.2e-05	25.3	0.6	2.1	1	1	1	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|257053182|ref|YP_003131015.1|	-	1.7e-05	24.4	0.2	0.0072	15.8	0.0	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|257053182|ref|YP_003131015.1|	-	0.0012	19.1	0.5	0.045	14.0	0.5	2.3	1	1	0	1	1	1	1	AAA	domain
TniB	PF05621.11	gi|257053182|ref|YP_003131015.1|	-	0.0091	15.4	0.1	0.22	10.9	0.1	2.1	2	0	0	2	2	2	1	Bacterial	TniB	protein
AAA_25	PF13481.6	gi|257053182|ref|YP_003131015.1|	-	0.016	14.8	0.0	0.76	9.3	0.0	2.3	2	1	0	2	2	2	0	AAA	domain
NACHT	PF05729.12	gi|257053182|ref|YP_003131015.1|	-	0.036	14.0	0.0	0.066	13.1	0.0	1.6	1	0	0	1	1	1	0	NACHT	domain
AAA_16	PF13191.6	gi|257053182|ref|YP_003131015.1|	-	0.043	14.2	0.0	0.065	13.6	0.0	1.4	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_29	PF13555.6	gi|257053182|ref|YP_003131015.1|	-	0.046	13.5	0.0	0.1	12.3	0.0	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
DUF87	PF01935.17	gi|257053182|ref|YP_003131015.1|	-	0.047	13.8	0.0	0.093	12.8	0.0	1.5	1	0	0	1	1	1	0	Helicase	HerA,	central	domain
PRK	PF00485.18	gi|257053182|ref|YP_003131015.1|	-	0.059	13.1	0.0	0.081	12.7	0.0	1.3	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
RNA_helicase	PF00910.22	gi|257053182|ref|YP_003131015.1|	-	0.083	13.3	0.0	0.15	12.5	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
IstB_IS21	PF01695.17	gi|257053182|ref|YP_003131015.1|	-	0.13	12.0	0.0	0.42	10.3	0.0	1.8	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
ATPase	PF06745.13	gi|257053182|ref|YP_003131015.1|	-	0.13	11.6	0.0	0.3	10.4	0.0	1.5	1	0	0	1	1	1	0	KaiC
AAA_24	PF13479.6	gi|257053182|ref|YP_003131015.1|	-	0.16	11.7	0.0	0.34	10.6	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
BPD_transp_1	PF00528.22	gi|257053183|ref|YP_003131016.1|	-	8.6e-23	81.0	7.9	8.6e-23	81.0	7.9	1.6	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|257053184|ref|YP_003131017.1|	-	8.3e-30	103.9	15.2	8.3e-30	103.9	15.2	1.9	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF2781	PF10914.8	gi|257053184|ref|YP_003131017.1|	-	0.0086	16.5	0.5	0.0086	16.5	0.5	2.0	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF2781)
Cnd1	PF12717.7	gi|257053185|ref|YP_003131018.1|	-	4.6e-16	59.3	0.0	1.5e-06	28.3	0.0	3.5	2	1	1	3	3	3	3	non-SMC	mitotic	condensation	complex	subunit	1
HEAT_2	PF13646.6	gi|257053185|ref|YP_003131018.1|	-	2.9e-15	56.4	36.1	6.3e-05	23.3	1.6	4.6	3	2	0	4	4	4	4	HEAT	repeats
HEAT	PF02985.22	gi|257053185|ref|YP_003131018.1|	-	3.1e-14	51.9	19.3	0.0011	19.0	0.3	7.3	8	0	0	8	8	7	5	HEAT	repeat
Adaptin_N	PF01602.20	gi|257053185|ref|YP_003131018.1|	-	4.8e-12	45.2	0.0	4.2e-09	35.5	0.0	3.2	1	1	0	1	1	1	1	Adaptin	N	terminal	region
HEAT_EZ	PF13513.6	gi|257053185|ref|YP_003131018.1|	-	0.00019	21.8	35.4	0.21	12.2	3.0	7.2	3	2	5	8	8	8	4	HEAT-like	repeat
Vac14_Fab1_bd	PF12755.7	gi|257053185|ref|YP_003131018.1|	-	0.0013	19.3	0.0	16	6.2	0.0	4.1	3	1	1	4	4	4	0	Vacuolar	14	Fab1-binding	region
API5	PF05918.11	gi|257053185|ref|YP_003131018.1|	-	0.029	13.2	1.0	3.7	6.2	0.0	3.1	2	2	1	3	3	3	0	Apoptosis	inhibitory	protein	5	(API5)
CLASP_N	PF12348.8	gi|257053185|ref|YP_003131018.1|	-	0.063	12.8	0.2	3	7.4	0.0	2.9	3	1	1	4	4	4	0	CLASP	N	terminal
HisKA_3	PF07730.13	gi|257053185|ref|YP_003131018.1|	-	0.071	13.6	14.7	0.38	11.3	0.3	5.0	5	0	0	5	5	5	0	Histidine	kinase
IFRD	PF05004.13	gi|257053185|ref|YP_003131018.1|	-	0.071	12.2	3.5	1.5	7.9	1.2	3.3	2	1	1	3	3	3	0	Interferon-related	developmental	regulator	(IFRD)
MMS19_N	PF14500.6	gi|257053185|ref|YP_003131018.1|	-	0.085	12.4	0.1	27	4.2	0.0	3.3	3	1	0	4	4	4	0	Dos2-interacting	transcription	regulator	of	RNA-Pol-II
HTH_31	PF13560.6	gi|257053185|ref|YP_003131018.1|	-	0.25	11.7	0.2	0.25	11.7	0.2	5.2	5	1	0	5	5	5	0	Helix-turn-helix	domain
Arm	PF00514.23	gi|257053185|ref|YP_003131018.1|	-	0.67	10.1	9.1	2.5	8.3	0.2	4.3	4	0	0	4	4	4	0	Armadillo/beta-catenin-like	repeat
K-cyclin_vir_C	PF09080.10	gi|257053185|ref|YP_003131018.1|	-	0.69	10.4	7.2	7.5	7.0	0.5	3.1	3	1	1	4	4	3	0	K	cyclin,	C	terminal
Cpn60_TCP1	PF00118.24	gi|257053188|ref|YP_003131021.1|	-	1.8e-155	518.3	7.0	2.1e-155	518.1	7.0	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
His_biosynth	PF00977.21	gi|257053189|ref|YP_003131022.1|	-	7.2e-74	248.1	5.7	8.1e-74	247.9	5.7	1.0	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
Dus	PF01207.17	gi|257053189|ref|YP_003131022.1|	-	8e-13	48.2	0.3	2.8e-06	26.7	0.0	2.1	2	0	0	2	2	2	2	Dihydrouridine	synthase	(Dus)
DHO_dh	PF01180.21	gi|257053189|ref|YP_003131022.1|	-	3e-09	36.5	2.4	2e-05	24.0	0.4	2.2	2	0	0	2	2	2	2	Dihydroorotate	dehydrogenase
NMO	PF03060.15	gi|257053189|ref|YP_003131022.1|	-	3.1e-08	33.4	9.5	8.2e-08	32.0	2.7	2.1	2	0	0	2	2	2	2	Nitronate	monooxygenase
ThiG	PF05690.14	gi|257053189|ref|YP_003131022.1|	-	2.9e-07	30.1	7.2	0.0016	17.8	0.3	2.1	2	0	0	2	2	2	2	Thiazole	biosynthesis	protein	ThiG
IMPDH	PF00478.25	gi|257053189|ref|YP_003131022.1|	-	4.1e-07	29.3	9.1	0.0017	17.4	1.6	2.5	2	1	1	3	3	3	2	IMP	dehydrogenase	/	GMP	reductase	domain
PcrB	PF01884.17	gi|257053189|ref|YP_003131022.1|	-	3.4e-06	26.7	5.0	0.00021	20.8	0.3	2.2	2	0	0	2	2	2	2	PcrB	family
Trp_syntA	PF00290.20	gi|257053189|ref|YP_003131022.1|	-	7.6e-06	25.0	2.1	0.022	13.6	0.3	2.2	2	0	0	2	2	2	2	Tryptophan	synthase	alpha	chain
IGPS	PF00218.21	gi|257053189|ref|YP_003131022.1|	-	7.6e-06	25.3	0.5	0.003	16.8	0.0	2.9	3	1	1	4	4	4	2	Indole-3-glycerol	phosphate	synthase
G3P_antiterm	PF04309.12	gi|257053189|ref|YP_003131022.1|	-	1.6e-05	24.4	1.9	0.016	14.6	0.2	2.3	2	0	0	2	2	2	2	Glycerol-3-phosphate	responsive	antiterminator
FMN_dh	PF01070.18	gi|257053189|ref|YP_003131022.1|	-	9.3e-05	21.6	8.2	0.042	12.9	3.0	2.1	2	0	0	2	2	2	2	FMN-dependent	dehydrogenase
NanE	PF04131.14	gi|257053189|ref|YP_003131022.1|	-	0.00047	19.4	2.7	0.22	10.7	0.4	2.4	2	1	0	2	2	2	2	Putative	N-acetylmannosamine-6-phosphate	epimerase
B12-binding	PF02310.19	gi|257053189|ref|YP_003131022.1|	-	0.00087	19.3	2.1	0.21	11.6	0.1	2.5	2	0	0	2	2	2	2	B12	binding	domain
TMP-TENI	PF02581.17	gi|257053189|ref|YP_003131022.1|	-	0.0052	16.1	4.2	0.085	12.2	0.9	2.2	2	0	0	2	2	2	1	Thiamine	monophosphate	synthase
QRPTase_C	PF01729.19	gi|257053189|ref|YP_003131022.1|	-	0.0087	15.9	0.8	1	9.1	0.1	2.2	2	0	0	2	2	2	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
DNA_pol_lambd_f	PF10391.9	gi|257053189|ref|YP_003131022.1|	-	0.04	13.7	0.0	27	4.7	0.0	3.3	3	0	0	3	3	3	0	Fingers	domain	of	DNA	polymerase	lambda
Ribul_P_3_epim	PF00834.19	gi|257053189|ref|YP_003131022.1|	-	0.056	12.8	5.3	0.82	9.0	0.5	2.4	2	0	0	2	2	2	0	Ribulose-phosphate	3	epimerase	family
MFS_1	PF07690.16	gi|257053190|ref|YP_003131023.1|	-	8.1e-29	100.6	53.4	7.2e-23	81.1	22.9	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
IGPD	PF00475.18	gi|257053191|ref|YP_003131024.1|	-	5.4e-61	205.1	2.4	5.4e-61	205.1	2.4	1.4	2	0	0	2	2	2	1	Imidazoleglycerol-phosphate	dehydratase
ACT	PF01842.25	gi|257053192|ref|YP_003131025.1|	-	0.00018	21.2	0.6	0.00067	19.4	0.1	2.2	2	1	0	2	2	2	1	ACT	domain
ACT_7	PF13840.6	gi|257053192|ref|YP_003131025.1|	-	0.00098	18.9	0.1	0.0027	17.5	0.0	1.7	2	0	0	2	2	2	1	ACT	domain
PGI	PF00342.19	gi|257053193|ref|YP_003131026.1|	-	1.6e-25	89.7	0.0	2.6e-23	82.4	0.0	2.1	2	0	0	2	2	2	2	Phosphoglucose	isomerase
DUF3924	PF13062.6	gi|257053194|ref|YP_003131027.1|	-	0.00067	19.6	0.0	0.00079	19.3	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3924)
SASP	PF00269.20	gi|257053194|ref|YP_003131027.1|	-	0.08	13.0	0.2	0.14	12.2	0.2	1.4	1	1	0	1	1	1	0	Small,	acid-soluble	spore	proteins,	alpha/beta	type
Fer4_15	PF13459.6	gi|257053195|ref|YP_003131028.1|	-	2.8e-20	72.8	5.3	3.3e-20	72.6	5.3	1.1	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.6	gi|257053195|ref|YP_003131028.1|	-	6.8e-09	36.1	0.8	1.2e-08	35.4	0.8	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_19	PF06902.11	gi|257053195|ref|YP_003131028.1|	-	0.052	13.6	0.1	0.51	10.5	0.1	2.0	1	1	0	1	1	1	0	Divergent	4Fe-4S	mono-cluster
Fer4	PF00037.27	gi|257053195|ref|YP_003131028.1|	-	0.071	13.0	1.0	2.8	7.9	0.1	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|257053195|ref|YP_003131028.1|	-	0.11	12.6	1.0	2.2	8.5	0.1	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
DEAD	PF00270.29	gi|257053196|ref|YP_003131029.1|	-	1.8e-20	73.5	0.0	4.7e-20	72.1	0.0	1.7	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|257053196|ref|YP_003131029.1|	-	9.4e-09	35.6	0.0	8.8e-06	26.0	0.0	3.1	1	1	1	2	2	2	2	Helicase	conserved	C-terminal	domain
HHH_5	PF14520.6	gi|257053196|ref|YP_003131029.1|	-	7.8e-07	29.6	0.3	4.7e-06	27.1	0.3	2.5	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
DNA_pol_lambd_f	PF10391.9	gi|257053196|ref|YP_003131029.1|	-	3.9e-05	23.4	0.1	0.00015	21.5	0.1	2.0	1	0	0	1	1	1	1	Fingers	domain	of	DNA	polymerase	lambda
CGI-121	PF08617.10	gi|257053197|ref|YP_003131030.1|	-	5e-13	49.5	0.0	5.9e-13	49.3	0.0	1.0	1	0	0	1	1	1	1	Kinase	binding	protein	CGI-121
Laminin_G_3	PF13385.6	gi|257053198|ref|YP_003131031.1|	-	1e-29	103.7	0.2	2.1e-29	102.6	0.2	1.5	1	0	0	1	1	1	1	Concanavalin	A-like	lectin/glucanases	superfamily
AglB_L1	PF18079.1	gi|257053198|ref|YP_003131031.1|	-	0.00022	21.5	1.8	0.00072	19.8	1.8	1.9	1	0	0	1	1	1	1	Archaeal	glycosylation	protein	B	long	peripheral	domain
Laminin_G_2	PF02210.24	gi|257053198|ref|YP_003131031.1|	-	0.014	16.0	0.0	0.029	14.9	0.0	1.5	1	0	0	1	1	1	0	Laminin	G	domain
CarboxypepD_reg	PF13620.6	gi|257053198|ref|YP_003131031.1|	-	0.4	11.0	3.5	2.3	8.5	3.1	2.5	2	0	0	2	2	2	0	Carboxypeptidase	regulatory-like	domain
MG2	PF01835.19	gi|257053199|ref|YP_003131032.1|	-	4.6e-10	39.8	3.1	0.027	14.9	0.1	5.9	6	0	0	6	6	6	3	MG2	domain
Filamin	PF00630.19	gi|257053199|ref|YP_003131032.1|	-	8.4e-06	26.5	5.0	0.043	14.6	0.1	4.2	3	1	1	4	4	4	2	Filamin/ABP280	repeat
Big_1	PF02369.16	gi|257053199|ref|YP_003131032.1|	-	5.3e-05	23.1	21.3	0.00026	20.9	0.2	7.3	5	2	1	6	6	6	2	Bacterial	Ig-like	domain	(group	1)
DUF4198	PF10670.9	gi|257053199|ref|YP_003131032.1|	-	0.00077	19.9	4.0	0.0016	18.8	0.3	3.0	2	1	1	3	3	3	1	Domain	of	unknown	function	(DUF4198)
DUF3244	PF11589.8	gi|257053199|ref|YP_003131032.1|	-	0.0013	18.8	0.2	1.6	8.8	0.0	3.6	3	0	0	3	3	3	2	Domain	of	unknown	function	(DUF3244)
DUF4625	PF15418.6	gi|257053199|ref|YP_003131032.1|	-	0.002	18.4	0.0	3.3	8.0	0.0	3.6	3	0	0	3	3	3	2	Domain	of	unknown	function	(DUF4625)
YtkA	PF13115.6	gi|257053199|ref|YP_003131032.1|	-	0.0021	18.7	0.5	17	6.1	0.0	4.8	5	1	0	5	5	5	1	YtkA-like
Big_3_3	PF13750.6	gi|257053199|ref|YP_003131032.1|	-	0.004	16.8	0.0	0.004	16.8	0.0	3.6	4	1	1	5	5	5	1	Bacterial	Ig-like	domain	(group	3)
Y_Y_Y	PF07495.13	gi|257053199|ref|YP_003131032.1|	-	0.013	15.4	0.7	3.9	7.5	0.0	3.5	4	0	0	4	4	4	0	Y_Y_Y	domain
Glycos_transf_2	PF00535.26	gi|257053200|ref|YP_003131033.1|	-	8.4e-26	90.8	0.0	1.1e-25	90.4	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|257053200|ref|YP_003131033.1|	-	1.8e-07	31.3	0.2	2.4e-07	30.9	0.2	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
DUF2304	PF10066.9	gi|257053200|ref|YP_003131033.1|	-	2e-07	31.2	4.6	3.1e-07	30.5	4.6	1.2	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2304)
NTP_transf_3	PF12804.7	gi|257053200|ref|YP_003131033.1|	-	0.031	14.6	0.2	0.05	14.0	0.2	1.4	1	0	0	1	1	1	0	MobA-like	NTP	transferase	domain
Glyco_tranf_2_4	PF13704.6	gi|257053200|ref|YP_003131033.1|	-	0.088	13.3	0.0	0.15	12.6	0.0	1.3	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
SinI	PF08671.10	gi|257053200|ref|YP_003131033.1|	-	0.14	11.9	0.3	0.27	11.1	0.3	1.4	1	0	0	1	1	1	0	Anti-repressor	SinI
N6_Mtase	PF02384.16	gi|257053200|ref|YP_003131033.1|	-	0.15	11.3	0.1	0.23	10.7	0.1	1.2	1	0	0	1	1	1	0	N-6	DNA	Methylase
Glycos_transf_1	PF00534.20	gi|257053201|ref|YP_003131034.1|	-	1.6e-37	128.7	0.0	2.5e-37	128.1	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|257053201|ref|YP_003131034.1|	-	1.5e-28	99.9	0.0	2.2e-28	99.3	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|257053201|ref|YP_003131034.1|	-	5e-11	42.9	0.0	1.5e-10	41.3	0.0	1.7	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|257053201|ref|YP_003131034.1|	-	4.2e-09	37.0	0.0	1.5e-08	35.3	0.0	1.9	2	0	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|257053201|ref|YP_003131034.1|	-	4.5e-09	36.6	0.0	1e-08	35.4	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_2	PF13477.6	gi|257053201|ref|YP_003131034.1|	-	0.038	14.0	0.0	0.063	13.3	0.0	1.3	1	0	0	1	1	1	0	Glycosyl	transferase	4-like
Sulfatase	PF00884.23	gi|257053202|ref|YP_003131035.1|	-	3.4e-42	144.9	0.4	6.9e-42	143.9	0.4	1.5	1	1	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.22	gi|257053202|ref|YP_003131035.1|	-	3.3e-08	33.5	0.4	0.00068	19.3	0.1	2.2	2	0	0	2	2	2	2	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF229	PF02995.17	gi|257053202|ref|YP_003131035.1|	-	0.00034	19.3	0.0	0.0009	18.0	0.0	1.6	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF229)
Phosphoesterase	PF04185.14	gi|257053202|ref|YP_003131035.1|	-	0.011	15.0	0.1	1.3	8.1	0.0	2.2	2	0	0	2	2	2	0	Phosphoesterase	family
PglZ	PF08665.12	gi|257053202|ref|YP_003131035.1|	-	0.21	11.7	0.2	12	6.0	0.0	2.5	2	1	0	2	2	2	0	PglZ	domain
Glyco_trans_1_4	PF13692.6	gi|257053203|ref|YP_003131036.1|	-	1.7e-25	90.0	0.0	2.6e-25	89.4	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glycos_transf_1	PF00534.20	gi|257053203|ref|YP_003131036.1|	-	2.1e-24	86.0	0.0	3.1e-24	85.4	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|257053203|ref|YP_003131036.1|	-	9e-20	71.3	0.3	1.6e-19	70.6	0.3	1.4	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|257053203|ref|YP_003131036.1|	-	2.1e-10	41.3	0.1	3.7e-10	40.5	0.1	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
ACT_7	PF13840.6	gi|257053203|ref|YP_003131036.1|	-	0.025	14.4	0.0	0.046	13.5	0.0	1.4	1	0	0	1	1	1	0	ACT	domain
Polysacc_synt_C	PF14667.6	gi|257053204|ref|YP_003131037.1|	-	8e-25	87.6	19.9	8e-25	87.6	19.9	3.3	3	1	0	4	4	4	1	Polysaccharide	biosynthesis	C-terminal	domain
Polysacc_synt_3	PF13440.6	gi|257053204|ref|YP_003131037.1|	-	9.2e-22	77.6	8.2	9.2e-22	77.6	8.2	2.7	2	1	1	3	3	3	1	Polysaccharide	biosynthesis	protein
MurJ	PF03023.14	gi|257053204|ref|YP_003131037.1|	-	2.5e-11	42.9	16.0	2.5e-11	42.9	16.0	2.6	2	1	0	2	2	2	1	Lipid	II	flippase	MurJ
Polysacc_synt	PF01943.17	gi|257053204|ref|YP_003131037.1|	-	6e-10	39.0	14.4	6e-10	39.0	14.4	2.3	1	1	1	2	2	2	1	Polysaccharide	biosynthesis	protein
MatE	PF01554.18	gi|257053204|ref|YP_003131037.1|	-	2.9e-05	23.8	7.9	2.9e-05	23.8	7.9	3.1	3	1	0	3	3	3	1	MatE
Glycos_transf_2	PF00535.26	gi|257053205|ref|YP_003131038.1|	-	4.5e-22	78.7	0.0	7.3e-22	78.0	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|257053205|ref|YP_003131038.1|	-	5e-12	46.2	0.0	8.5e-12	45.4	0.0	1.3	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.9	gi|257053205|ref|YP_003131038.1|	-	1.6e-07	31.1	0.3	2e-07	30.8	0.3	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.6	gi|257053205|ref|YP_003131038.1|	-	4e-06	26.9	0.2	6.2e-06	26.3	0.2	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glyco_tranf_2_5	PF13712.6	gi|257053205|ref|YP_003131038.1|	-	0.00014	21.6	0.0	0.00022	21.0	0.0	1.3	1	1	0	1	1	1	1	Glycosyltransferase	like	family
Glyco_tranf_2_4	PF13704.6	gi|257053205|ref|YP_003131038.1|	-	0.026	15.0	0.0	0.077	13.5	0.0	1.9	2	1	0	2	2	2	0	Glycosyl	transferase	family	2
zf-C4_ClpX	PF06689.13	gi|257053205|ref|YP_003131038.1|	-	0.058	13.3	1.2	0.1	12.5	1.2	1.4	1	0	0	1	1	1	0	ClpX	C4-type	zinc	finger
Glyco_transf_21	PF13506.6	gi|257053205|ref|YP_003131038.1|	-	0.13	11.7	0.0	0.28	10.6	0.0	1.5	1	1	0	1	1	1	0	Glycosyl	transferase	family	21
Glycos_transf_1	PF00534.20	gi|257053206|ref|YP_003131039.1|	-	1.2e-30	106.3	0.0	1.9e-30	105.6	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|257053206|ref|YP_003131039.1|	-	1.4e-23	83.8	0.0	3.1e-23	82.7	0.0	1.6	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|257053206|ref|YP_003131039.1|	-	3.4e-12	46.7	0.0	8.2e-12	45.4	0.0	1.6	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_1_2	PF13524.6	gi|257053206|ref|YP_003131039.1|	-	7.7e-10	39.0	0.0	1.8e-09	37.9	0.0	1.6	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.6	gi|257053206|ref|YP_003131039.1|	-	0.0083	16.6	0.0	0.018	15.5	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
CcmH	PF03918.14	gi|257053207|ref|YP_003131040.1|	-	1.8	7.8	3.5	1.4	8.2	1.0	2.0	2	0	0	2	2	2	0	Cytochrome	C	biogenesis	protein
dTDP_sugar_isom	PF00908.17	gi|257053209|ref|YP_003131042.1|	-	5.7e-14	52.1	0.0	6.2e-14	52.0	0.0	1.0	1	0	0	1	1	1	1	dTDP-4-dehydrorhamnose	3,5-epimerase
FdtA	PF05523.11	gi|257053209|ref|YP_003131042.1|	-	0.013	15.2	0.0	0.017	14.8	0.0	1.3	1	1	0	1	1	1	0	WxcM-like,	C-terminal
Cupin_2	PF07883.11	gi|257053209|ref|YP_003131042.1|	-	0.043	13.5	1.5	0.47	10.2	1.5	2.2	1	1	0	1	1	1	0	Cupin	domain
NTP_transferase	PF00483.23	gi|257053210|ref|YP_003131043.1|	-	2.4e-57	194.3	0.0	2.9e-57	194.1	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|257053210|ref|YP_003131043.1|	-	1.2e-12	48.5	0.0	1.7e-12	48.0	0.0	1.3	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Hexapep	PF00132.24	gi|257053210|ref|YP_003131043.1|	-	1.4e-06	27.8	3.6	0.00053	19.6	0.3	3.9	3	1	1	4	4	4	2	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|257053210|ref|YP_003131043.1|	-	0.0001	22.0	1.9	0.0065	16.2	0.0	4.1	4	1	0	4	4	4	1	Hexapeptide	repeat	of	succinyl-transferase
IspD	PF01128.19	gi|257053210|ref|YP_003131043.1|	-	0.00017	21.4	0.0	0.00032	20.5	0.0	1.5	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
zf-ACC	PF17848.1	gi|257053211|ref|YP_003131044.1|	-	0.0091	16.0	2.4	0.011	15.8	0.1	2.0	2	1	0	2	2	2	1	Acetyl-coA	carboxylase	zinc	finger	domain
TF_Zn_Ribbon	PF08271.12	gi|257053211|ref|YP_003131044.1|	-	0.03	13.9	0.6	0.087	12.3	0.1	1.9	2	0	0	2	2	2	0	TFIIB	zinc-binding
zf_UBZ	PF18439.1	gi|257053211|ref|YP_003131044.1|	-	0.073	12.7	0.0	0.13	11.9	0.0	1.4	1	0	0	1	1	1	0	Ubiquitin-Binding	Zinc	Finger
OrfB_Zn_ribbon	PF07282.11	gi|257053211|ref|YP_003131044.1|	-	0.079	12.9	0.5	0.1	12.5	0.5	1.2	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
RmlD_sub_bind	PF04321.17	gi|257053212|ref|YP_003131045.1|	-	4.6e-64	216.3	0.1	5.5e-64	216.0	0.1	1.0	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Epimerase	PF01370.21	gi|257053212|ref|YP_003131045.1|	-	1.8e-25	89.8	0.0	2.6e-25	89.3	0.0	1.2	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|257053212|ref|YP_003131045.1|	-	3.5e-12	46.4	0.2	1.3e-11	44.5	0.2	1.8	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Polysacc_synt_2	PF02719.15	gi|257053212|ref|YP_003131045.1|	-	6.4e-08	32.1	0.6	3e-06	26.6	0.6	2.7	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.12	gi|257053212|ref|YP_003131045.1|	-	1.6e-07	30.8	0.5	6.7e-07	28.7	0.1	2.0	2	1	0	2	2	2	1	Male	sterility	protein
3Beta_HSD	PF01073.19	gi|257053212|ref|YP_003131045.1|	-	5e-06	25.7	0.2	1.4e-05	24.2	0.2	1.7	1	1	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NAD_binding_10	PF13460.6	gi|257053212|ref|YP_003131045.1|	-	5.4e-06	26.4	0.0	8.7e-06	25.8	0.0	1.3	1	0	0	1	1	1	1	NAD(P)H-binding
GDP_Man_Dehyd	PF16363.5	gi|257053213|ref|YP_003131046.1|	-	1.4e-79	267.9	0.0	1.6e-79	267.7	0.0	1.0	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Epimerase	PF01370.21	gi|257053213|ref|YP_003131046.1|	-	1.2e-64	218.0	0.0	1.5e-64	217.8	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.19	gi|257053213|ref|YP_003131046.1|	-	3.3e-23	82.1	0.0	4.3e-23	81.7	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.15	gi|257053213|ref|YP_003131046.1|	-	3.9e-22	78.8	0.0	9e-21	74.3	0.0	2.0	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
RmlD_sub_bind	PF04321.17	gi|257053213|ref|YP_003131046.1|	-	5.3e-21	75.0	0.0	6.4e-21	74.7	0.0	1.0	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
NAD_binding_4	PF07993.12	gi|257053213|ref|YP_003131046.1|	-	1.2e-15	57.4	0.1	1.4e-14	53.9	0.1	2.1	1	1	0	1	1	1	1	Male	sterility	protein
NAD_binding_10	PF13460.6	gi|257053213|ref|YP_003131046.1|	-	4.8e-12	46.2	0.1	9.4e-12	45.2	0.1	1.4	1	0	0	1	1	1	1	NAD(P)H-binding
Sacchrp_dh_NADP	PF03435.18	gi|257053213|ref|YP_003131046.1|	-	0.0039	17.5	0.1	0.0065	16.7	0.1	1.4	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
adh_short	PF00106.25	gi|257053213|ref|YP_003131046.1|	-	0.0045	16.5	0.0	0.5	9.8	0.0	2.5	3	0	0	3	3	3	1	short	chain	dehydrogenase
NmrA	PF05368.13	gi|257053213|ref|YP_003131046.1|	-	0.0048	16.5	0.1	0.0077	15.8	0.1	1.3	1	0	0	1	1	1	1	NmrA-like	family
KR	PF08659.10	gi|257053213|ref|YP_003131046.1|	-	0.0091	15.9	0.0	0.021	14.7	0.0	1.7	1	1	0	1	1	1	1	KR	domain
PKD	PF00801.20	gi|257053214|ref|YP_003131047.1|	-	2e-16	59.6	14.4	6.4e-09	35.5	1.0	4.9	3	0	0	3	3	3	3	PKD	domain
CARDB	PF07705.11	gi|257053214|ref|YP_003131047.1|	-	2.1e-06	27.9	0.7	0.0024	18.1	0.3	6.1	7	0	0	7	7	7	2	CARDB
DUF2586	PF10758.9	gi|257053214|ref|YP_003131047.1|	-	0.04	13.1	0.0	0.069	12.3	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2586)
NPCBM_assoc	PF10633.9	gi|257053214|ref|YP_003131047.1|	-	0.34	11.2	8.6	10	6.4	0.2	5.3	3	2	0	3	3	3	0	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
PKD_3	PF16820.5	gi|257053214|ref|YP_003131047.1|	-	0.94	9.3	10.6	1.4	8.7	0.2	3.9	4	0	0	4	4	4	0	PKD-like	domain
PPC	PF04151.15	gi|257053215|ref|YP_003131048.1|	-	2.3e-09	38.2	21.1	0.0033	18.5	2.5	5.0	4	1	0	4	4	4	3	Bacterial	pre-peptidase	C-terminal	domain
CopC	PF04234.12	gi|257053215|ref|YP_003131048.1|	-	0.00057	20.9	0.3	21	6.3	0.0	4.0	4	0	0	4	4	4	1	CopC	domain
DUF2691	PF10903.8	gi|257053215|ref|YP_003131048.1|	-	0.0034	17.3	0.0	2.4	8.0	0.0	2.4	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF2691)
Mfa2	PF08842.10	gi|257053215|ref|YP_003131048.1|	-	0.0039	16.8	12.6	0.057	13.0	0.4	4.1	3	1	1	4	4	4	2	Fimbrillin-A	associated	anchor	proteins	Mfa1	and	Mfa2
DUF3696	PF12476.8	gi|257053215|ref|YP_003131048.1|	-	0.071	13.5	0.3	0.23	11.9	0.1	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3696)
ACR_tran	PF00873.19	gi|257053215|ref|YP_003131048.1|	-	0.26	8.9	0.0	3.8	5.0	0.0	2.0	2	0	0	2	2	2	0	AcrB/AcrD/AcrF	family
Phosphodiest	PF01663.22	gi|257053217|ref|YP_003131050.1|	-	3.8e-42	145.2	0.1	8.7e-42	144.0	0.1	1.5	1	1	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF1380	PF07128.12	gi|257053217|ref|YP_003131050.1|	-	0.076	13.2	0.2	5.8	7.1	0.0	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1380)
Peptidase_S8	PF00082.22	gi|257053218|ref|YP_003131051.1|	-	2.4e-16	59.9	5.9	1.6e-14	53.9	0.3	3.0	2	1	0	2	2	2	2	Subtilase	family
BDV_M	PF16520.5	gi|257053219|ref|YP_003131052.1|	-	0.17	12.3	0.0	0.26	11.6	0.0	1.2	1	0	0	1	1	1	0	ssRNA-binding	matrix	protein	of	Bornaviridae
CarboxypepD_reg	PF13620.6	gi|257053220|ref|YP_003131053.1|	-	2e-10	40.8	19.0	0.00018	21.7	3.0	4.1	3	0	0	3	3	3	3	Carboxypeptidase	regulatory-like	domain
CarbopepD_reg_2	PF13715.6	gi|257053220|ref|YP_003131053.1|	-	1.2e-05	25.2	0.5	0.012	15.6	0.1	2.8	2	0	0	2	2	2	2	CarboxypepD_reg-like	domain
Big_3_5	PF16640.5	gi|257053220|ref|YP_003131053.1|	-	0.0006	19.9	24.3	0.28	11.4	0.5	4.2	2	1	1	3	3	3	3	Bacterial	Ig-like	domain	(group	3)
Big_7	PF17957.1	gi|257053220|ref|YP_003131053.1|	-	0.00065	20.4	8.1	0.035	14.9	0.0	3.9	3	0	0	3	3	3	1	Bacterial	Ig	domain
MG4	PF17789.1	gi|257053220|ref|YP_003131053.1|	-	0.0018	18.4	0.8	1.3	9.2	0.0	3.4	3	0	0	3	3	3	1	Macroglobulin	domain	MG4
CooC_C	PF15976.5	gi|257053220|ref|YP_003131053.1|	-	0.0046	17.0	0.0	0.12	12.5	0.0	2.6	2	0	0	2	2	2	1	CS1-pili	formation	C-terminal
UTRA	PF07702.13	gi|257053220|ref|YP_003131053.1|	-	0.016	15.1	0.0	0.086	12.7	0.0	2.2	2	0	0	2	2	2	0	UTRA	domain
DUF5016	PF16408.5	gi|257053220|ref|YP_003131053.1|	-	0.15	12.1	0.0	1.8	8.6	0.0	2.4	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF5016)
TTR-52	PF01060.23	gi|257053220|ref|YP_003131053.1|	-	0.2	12.4	0.0	30	5.4	0.0	3.2	3	0	0	3	3	3	0	Transthyretin-like	family
Big_1	PF02369.16	gi|257053220|ref|YP_003131053.1|	-	3.3	7.8	20.6	0.14	12.2	0.9	4.2	5	1	0	5	5	5	0	Bacterial	Ig-like	domain	(group	1)
DUF58	PF01882.18	gi|257053221|ref|YP_003131054.1|	-	2.6e-20	72.5	0.0	6.7e-20	71.2	0.0	1.7	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF58
ExoD	PF06055.12	gi|257053222|ref|YP_003131055.1|	-	1.4	8.2	9.0	0.32	10.3	5.0	1.8	1	1	1	2	2	2	0	Exopolysaccharide	synthesis,	ExoD
DUF2207	PF09972.9	gi|257053223|ref|YP_003131056.1|	-	0.03	13.1	0.0	0.042	12.6	0.0	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
DUF3040	PF11239.8	gi|257053223|ref|YP_003131056.1|	-	0.068	13.4	0.2	0.14	12.4	0.2	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3040)
AAA_3	PF07726.11	gi|257053224|ref|YP_003131057.1|	-	9e-62	206.7	0.7	2.7e-61	205.2	0.2	2.0	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_2	PF17863.1	gi|257053224|ref|YP_003131057.1|	-	2.9e-20	71.9	0.5	7.2e-20	70.6	0.5	1.7	1	0	0	1	1	1	1	AAA	lid	domain
AAA_5	PF07728.14	gi|257053224|ref|YP_003131057.1|	-	1.5e-18	67.2	0.0	3.2e-18	66.1	0.0	1.6	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
MCM	PF00493.23	gi|257053224|ref|YP_003131057.1|	-	4.4e-06	25.9	0.0	7.3e-06	25.2	0.0	1.3	1	0	0	1	1	1	1	MCM	P-loop	domain
Sigma54_activat	PF00158.26	gi|257053224|ref|YP_003131057.1|	-	2.1e-05	24.3	0.0	0.00046	19.9	0.0	2.4	1	1	0	1	1	1	1	Sigma-54	interaction	domain
RuvB_N	PF05496.12	gi|257053224|ref|YP_003131057.1|	-	6.3e-05	22.8	1.0	0.00045	20.0	0.1	2.6	2	1	0	2	2	2	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA	PF00004.29	gi|257053224|ref|YP_003131057.1|	-	0.00027	21.4	0.0	0.0008	19.8	0.0	1.9	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Mg_chelatase	PF01078.21	gi|257053224|ref|YP_003131057.1|	-	0.00056	19.3	0.0	0.45	9.9	0.0	2.3	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
AAA_16	PF13191.6	gi|257053224|ref|YP_003131057.1|	-	0.012	16.0	0.9	0.07	13.5	0.9	2.6	1	1	0	1	1	1	0	AAA	ATPase	domain
DUF4350	PF14258.6	gi|257053225|ref|YP_003131058.1|	-	2.6e-05	24.6	1.0	0.00012	22.4	0.2	2.4	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4350)
DraK_HK_N	PF18092.1	gi|257053225|ref|YP_003131058.1|	-	0.22	12.0	3.0	0.51	10.8	1.4	2.3	2	0	0	2	2	2	0	DraK	Histidine	Kinase	N-terminal	domain
AbrB-like	PF14250.6	gi|257053227|ref|YP_003131060.1|	-	0.015	15.3	0.0	0.019	15.1	0.0	1.4	1	1	0	1	1	1	0	AbrB-like	transcriptional	regulator
Apolipoprotein	PF01442.18	gi|257053228|ref|YP_003131061.1|	-	2.3e-05	24.4	17.7	0.019	14.8	7.2	2.6	1	1	1	2	2	2	2	Apolipoprotein	A1/A4/E	domain
P35	PF02331.15	gi|257053228|ref|YP_003131061.1|	-	0.0016	17.9	0.1	0.0022	17.4	0.1	1.2	1	0	0	1	1	1	1	Apoptosis	preventing	protein
DUF812	PF05667.11	gi|257053228|ref|YP_003131061.1|	-	0.0017	17.3	8.5	0.002	17.1	8.5	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF812)
FlxA	PF14282.6	gi|257053228|ref|YP_003131061.1|	-	0.003	17.5	3.5	0.003	17.5	3.5	2.2	2	0	0	2	2	2	1	FlxA-like	protein
NPV_P10	PF05531.12	gi|257053228|ref|YP_003131061.1|	-	0.0031	17.9	11.2	5.5	7.5	10.8	3.8	1	1	0	1	1	1	0	Nucleopolyhedrovirus	P10	protein
Baculo_PEP_C	PF04513.12	gi|257053228|ref|YP_003131061.1|	-	0.0054	16.8	6.0	1	9.4	0.0	2.9	1	1	2	3	3	3	1	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
MLD	PF11647.8	gi|257053228|ref|YP_003131061.1|	-	0.015	15.6	0.4	3.9	7.8	0.0	2.8	2	1	0	2	2	2	0	Membrane	Localization	Domain
ApoLp-III	PF07464.11	gi|257053228|ref|YP_003131061.1|	-	0.018	15.1	12.3	0.16	12.1	3.1	2.4	1	1	1	2	2	2	0	Apolipophorin-III	precursor	(apoLp-III)
DUF2783	PF10932.8	gi|257053228|ref|YP_003131061.1|	-	0.023	14.4	0.2	0.23	11.2	0.1	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2783)
NleF_casp_inhib	PF16809.5	gi|257053228|ref|YP_003131061.1|	-	0.026	14.5	3.2	0.038	13.9	2.4	1.7	1	1	0	1	1	1	0	NleF	caspase	inhibitor
Paxillin	PF03535.13	gi|257053228|ref|YP_003131061.1|	-	0.049	13.5	1.6	0.056	13.3	0.1	1.7	2	0	0	2	2	2	0	Paxillin	family
FlaC_arch	PF05377.11	gi|257053228|ref|YP_003131061.1|	-	0.067	13.6	10.5	1.2	9.6	2.6	3.9	2	2	2	4	4	4	0	Flagella	accessory	protein	C	(FlaC)
YtxH	PF12732.7	gi|257053228|ref|YP_003131061.1|	-	0.078	13.5	7.8	8.9	6.9	7.8	3.1	1	1	0	1	1	1	0	YtxH-like	protein
EspB	PF05802.11	gi|257053228|ref|YP_003131061.1|	-	0.082	12.9	13.3	0.13	12.3	13.3	1.3	1	0	0	1	1	1	0	Enterobacterial	EspB	protein
Prominin	PF05478.11	gi|257053228|ref|YP_003131061.1|	-	0.11	10.5	3.7	0.28	9.1	3.7	1.6	1	1	0	1	1	1	0	Prominin
ApoO	PF09769.9	gi|257053228|ref|YP_003131061.1|	-	0.18	11.8	3.1	7.7	6.5	0.2	2.6	1	1	0	2	2	2	0	Apolipoprotein	O
COG5	PF10392.9	gi|257053228|ref|YP_003131061.1|	-	0.19	11.9	2.8	8.2	6.6	1.2	2.7	1	1	0	2	2	2	0	Golgi	transport	complex	subunit	5
Sec34	PF04136.15	gi|257053228|ref|YP_003131061.1|	-	0.19	11.6	4.9	0.41	10.5	1.3	2.7	1	1	0	2	2	2	0	Sec34-like	family
Cauli_AT	PF03233.13	gi|257053228|ref|YP_003131061.1|	-	0.21	11.5	0.5	0.38	10.7	0.2	1.5	1	1	1	2	2	2	0	Aphid	transmission	protein
DUF4559	PF15112.6	gi|257053228|ref|YP_003131061.1|	-	0.26	10.9	7.8	0.47	10.1	7.8	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4559)
PhaP_Bmeg	PF09602.10	gi|257053228|ref|YP_003131061.1|	-	0.27	11.1	10.3	4.5	7.2	9.5	2.4	1	1	1	2	2	2	0	Polyhydroxyalkanoic	acid	inclusion	protein	(PhaP_Bmeg)
Spc7	PF08317.11	gi|257053228|ref|YP_003131061.1|	-	0.29	10.0	13.3	0.015	14.2	7.3	1.7	1	1	0	1	1	1	0	Spc7	kinetochore	protein
Filament	PF00038.21	gi|257053228|ref|YP_003131061.1|	-	0.32	10.5	13.4	0.45	10.0	13.4	1.2	1	0	0	1	1	1	0	Intermediate	filament	protein
DUF1664	PF07889.12	gi|257053228|ref|YP_003131061.1|	-	0.33	11.0	9.5	0.46	10.5	3.8	2.4	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1664)
Cytochrom_B562	PF07361.11	gi|257053228|ref|YP_003131061.1|	-	0.39	11.4	8.6	0.098	13.3	3.8	2.2	1	1	0	2	2	2	0	Cytochrome	b562
T4_neck-protein	PF11649.8	gi|257053228|ref|YP_003131061.1|	-	0.39	10.0	3.5	2.8	7.2	2.6	2.2	2	0	0	2	2	2	0	Virus	neck	protein
Prefoldin	PF02996.17	gi|257053228|ref|YP_003131061.1|	-	0.49	10.3	8.7	0.086	12.7	1.9	2.9	1	1	0	2	2	2	0	Prefoldin	subunit
DASH_Dam1	PF08653.10	gi|257053228|ref|YP_003131061.1|	-	0.53	10.1	3.8	18	5.2	0.2	2.8	1	1	1	2	2	2	0	DASH	complex	subunit	Dam1
Alpha-E	PF04168.12	gi|257053228|ref|YP_003131061.1|	-	0.55	10.0	5.1	0.33	10.7	1.1	2.0	1	1	1	2	2	2	0	A	predicted	alpha-helical	domain	with	a	conserved	ER	motif.
Laminin_II	PF06009.12	gi|257053228|ref|YP_003131061.1|	-	0.67	10.0	7.2	0.89	9.6	4.1	2.5	1	1	1	2	2	2	0	Laminin	Domain	II
DUF848	PF05852.11	gi|257053228|ref|YP_003131061.1|	-	0.81	9.8	12.9	0.093	12.8	4.9	2.4	1	1	1	2	2	2	0	Gammaherpesvirus	protein	of	unknown	function	(DUF848)
DUF4618	PF15397.6	gi|257053228|ref|YP_003131061.1|	-	0.86	9.0	9.7	0.22	10.9	4.3	2.0	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4618)
DUF883	PF05957.13	gi|257053228|ref|YP_003131061.1|	-	0.87	10.2	11.5	4.5	7.9	5.1	2.9	1	1	2	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF883)
TRPM_tetra	PF16519.5	gi|257053228|ref|YP_003131061.1|	-	0.92	9.7	8.6	2.4	8.3	2.6	3.0	1	1	1	2	2	2	0	Tetramerisation	domain	of	TRPM
MbeD_MobD	PF04899.12	gi|257053228|ref|YP_003131061.1|	-	0.94	9.6	7.4	1.5	9.0	2.0	2.8	2	1	0	2	2	2	0	MbeD/MobD	like
UPF0184	PF03670.13	gi|257053228|ref|YP_003131061.1|	-	0.99	9.8	6.5	5	7.6	3.1	2.7	1	1	0	2	2	2	0	Uncharacterised	protein	family	(UPF0184)
CdvA	PF18822.1	gi|257053228|ref|YP_003131061.1|	-	1.8	8.4	7.7	0.8	9.5	1.9	2.7	2	1	1	3	3	3	0	CdvA-like	coiled-coil	domain
YabA	PF06156.13	gi|257053228|ref|YP_003131061.1|	-	2	9.1	7.4	2.3	8.9	0.8	3.2	1	1	2	3	3	3	0	Initiation	control	protein	YabA
DUF1690	PF07956.11	gi|257053228|ref|YP_003131061.1|	-	2.2	8.7	8.5	1.5	9.3	4.5	2.4	1	1	1	2	2	2	0	Protein	of	Unknown	function	(DUF1690)
COG2	PF06148.11	gi|257053228|ref|YP_003131061.1|	-	2.4	8.2	10.3	2.7	8.1	1.8	3.2	1	1	2	3	3	3	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Seryl_tRNA_N	PF02403.22	gi|257053228|ref|YP_003131061.1|	-	2.5	8.4	7.3	1.3	9.2	3.2	2.6	1	1	0	2	2	2	0	Seryl-tRNA	synthetase	N-terminal	domain
TolA_bind_tri	PF16331.5	gi|257053228|ref|YP_003131061.1|	-	2.5	8.2	15.6	0.045	13.8	5.7	2.5	2	1	0	2	2	2	0	TolA	binding	protein	trimerisation
TMPIT	PF07851.13	gi|257053228|ref|YP_003131061.1|	-	2.6	7.2	5.7	0.74	9.0	1.4	1.8	1	1	1	2	2	2	0	TMPIT-like	protein
Muted	PF14942.6	gi|257053228|ref|YP_003131061.1|	-	2.8	8.3	9.7	1.2	9.5	2.5	2.3	1	1	0	2	2	2	0	Organelle	biogenesis,	Muted-like	protein
Syntaxin-6_N	PF09177.11	gi|257053228|ref|YP_003131061.1|	-	3.4	8.3	8.2	8.5	7.0	2.3	2.6	1	1	1	2	2	2	0	Syntaxin	6,	N-terminal
DUF948	PF06103.11	gi|257053228|ref|YP_003131061.1|	-	3.9	7.8	7.2	3.4	8.0	4.2	2.6	2	1	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
DUF1993	PF09351.10	gi|257053228|ref|YP_003131061.1|	-	6	7.0	8.0	17	5.5	1.0	2.8	1	1	1	3	3	3	0	Domain	of	unknown	function	(DUF1993)
Spectrin	PF00435.21	gi|257053228|ref|YP_003131061.1|	-	6.5	7.3	15.4	1.2	9.7	5.9	3.0	1	1	0	2	2	2	0	Spectrin	repeat
MMPL	PF03176.15	gi|257053228|ref|YP_003131061.1|	-	9.5	5.0	7.6	2.4	7.0	3.1	1.9	2	0	0	2	2	2	0	MMPL	family
PHA_synth_III_E	PF09712.10	gi|257053229|ref|YP_003131062.1|	-	9.2e-11	41.4	6.5	6.1e-10	38.7	0.5	2.0	1	1	1	2	2	2	2	Poly(R)-hydroxyalkanoic	acid	synthase	subunit	(PHA_synth_III_E)
IMD	PF08397.11	gi|257053229|ref|YP_003131062.1|	-	0.00075	18.9	0.5	0.15	11.5	0.0	3.0	2	2	1	3	3	3	1	IRSp53/MIM	homology	domain
TolA_bind_tri	PF16331.5	gi|257053229|ref|YP_003131062.1|	-	0.0029	17.7	0.4	0.0029	17.7	0.4	2.1	2	0	0	2	2	2	1	TolA	binding	protein	trimerisation
Phasin	PF05597.11	gi|257053229|ref|YP_003131062.1|	-	0.011	15.8	3.2	0.035	14.1	0.3	2.4	1	1	1	2	2	2	0	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
Phasin_2	PF09361.10	gi|257053229|ref|YP_003131062.1|	-	0.15	12.4	10.3	2.1	8.6	1.1	3.0	2	1	1	3	3	3	0	Phasin	protein
Abhydrolase_1	PF00561.20	gi|257053230|ref|YP_003131063.1|	-	9.9e-20	71.3	0.0	1.7e-19	70.5	0.0	1.4	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.8	gi|257053230|ref|YP_003131063.1|	-	9.5e-11	41.4	0.0	1.6e-09	37.4	0.0	2.2	1	1	0	1	1	1	1	Serine	aminopeptidase,	S33
DUF3141	PF11339.8	gi|257053230|ref|YP_003131063.1|	-	5.2e-10	38.4	0.1	4.5e-07	28.7	0.3	2.1	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF3141)
PhaC_N	PF07167.13	gi|257053230|ref|YP_003131063.1|	-	3.1e-09	36.7	0.0	5.9e-09	35.8	0.0	1.5	1	0	0	1	1	1	1	Poly-beta-hydroxybutyrate	polymerase	(PhaC)	N-terminus
DLH	PF01738.18	gi|257053230|ref|YP_003131063.1|	-	8.1e-09	35.3	0.1	0.00011	21.8	0.0	3.1	3	0	0	3	3	3	2	Dienelactone	hydrolase	family
HHH_5	PF14520.6	gi|257053230|ref|YP_003131063.1|	-	1.3e-06	28.9	0.0	2.9e-06	27.8	0.0	1.6	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
Cdd1	PF11731.8	gi|257053230|ref|YP_003131063.1|	-	0.00023	21.4	0.0	0.00056	20.1	0.0	1.7	1	0	0	1	1	1	1	Pathogenicity	locus
DUF4332	PF14229.6	gi|257053230|ref|YP_003131063.1|	-	0.00028	21.1	0.0	0.00055	20.2	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4332)
PHB_depo_C	PF06850.11	gi|257053230|ref|YP_003131063.1|	-	0.00035	20.1	0.1	0.00065	19.2	0.1	1.4	1	0	0	1	1	1	1	PHB	de-polymerase	C-terminus
FSH1	PF03959.13	gi|257053230|ref|YP_003131063.1|	-	0.00044	20.0	0.0	0.0068	16.1	0.0	2.2	2	0	0	2	2	2	1	Serine	hydrolase	(FSH1)
Abhydrolase_6	PF12697.7	gi|257053230|ref|YP_003131063.1|	-	0.00082	20.0	0.0	0.0014	19.3	0.0	1.4	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
DNA_pol_lambd_f	PF10391.9	gi|257053230|ref|YP_003131063.1|	-	0.0052	16.6	0.0	0.013	15.3	0.0	1.7	1	0	0	1	1	1	1	Fingers	domain	of	DNA	polymerase	lambda
BAF	PF02961.14	gi|257053230|ref|YP_003131063.1|	-	0.025	15.0	0.0	0.071	13.5	0.0	1.7	1	0	0	1	1	1	0	Barrier	to	autointegration	factor
BAAT_C	PF08840.11	gi|257053230|ref|YP_003131063.1|	-	0.04	13.8	0.0	0.56	10.1	0.0	2.4	1	1	0	1	1	1	0	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
DUF915	PF06028.11	gi|257053230|ref|YP_003131063.1|	-	0.12	11.7	0.0	7.1	5.9	0.0	2.2	2	0	0	2	2	2	0	Alpha/beta	hydrolase	of	unknown	function	(DUF915)
HTH_3	PF01381.22	gi|257053231|ref|YP_003131064.1|	-	8.5e-12	45.0	0.0	1e-11	44.7	0.0	1.1	1	0	0	1	1	1	1	Helix-turn-helix
HTH_19	PF12844.7	gi|257053231|ref|YP_003131064.1|	-	1.1e-11	44.5	0.0	1.3e-11	44.3	0.0	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_31	PF13560.6	gi|257053231|ref|YP_003131064.1|	-	8e-11	42.1	0.0	1e-10	41.8	0.0	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|257053231|ref|YP_003131064.1|	-	0.0029	17.1	0.0	0.0037	16.8	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_25	PF13413.6	gi|257053231|ref|YP_003131064.1|	-	0.0037	17.1	0.0	0.0046	16.8	0.0	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
YdaS_antitoxin	PF15943.5	gi|257053231|ref|YP_003131064.1|	-	0.0092	15.8	0.0	0.012	15.5	0.0	1.2	1	0	0	1	1	1	1	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
HTH_Crp_2	PF13545.6	gi|257053231|ref|YP_003131064.1|	-	0.07	13.1	0.1	0.12	12.4	0.1	1.3	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_11	PF08279.12	gi|257053231|ref|YP_003131064.1|	-	0.081	12.9	0.1	0.13	12.2	0.1	1.3	1	0	0	1	1	1	0	HTH	domain
HTH_28	PF13518.6	gi|257053231|ref|YP_003131064.1|	-	0.096	12.8	0.1	0.13	12.4	0.1	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_26	PF13443.6	gi|257053231|ref|YP_003131064.1|	-	0.16	12.4	0.0	0.19	12.2	0.0	1.1	1	0	0	1	1	1	0	Cro/C1-type	HTH	DNA-binding	domain
DUF2178	PF09946.9	gi|257053232|ref|YP_003131065.1|	-	8.5e-07	29.1	1.6	1.6e-06	28.3	1.0	1.7	1	1	1	2	2	2	1	Predicted	membrane	protein	(DUF2178)
DUF2975	PF11188.8	gi|257053232|ref|YP_003131065.1|	-	0.014	15.3	6.5	0.05	13.5	1.1	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2975)
COX14	PF14880.6	gi|257053232|ref|YP_003131065.1|	-	0.064	13.1	0.5	0.19	11.6	0.0	2.1	2	0	0	2	2	2	0	Cytochrome	oxidase	c	assembly
DUF4781	PF16013.5	gi|257053232|ref|YP_003131065.1|	-	0.17	10.7	0.4	0.2	10.4	0.4	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4781)
MCM	PF00493.23	gi|257053234|ref|YP_003131067.1|	-	6.2e-81	270.8	0.3	2.9e-35	121.4	0.0	3.4	3	0	0	3	3	3	3	MCM	P-loop	domain
Intein_splicing	PF14890.6	gi|257053234|ref|YP_003131067.1|	-	5.6e-49	165.5	0.0	3.4e-24	85.3	0.0	2.7	3	0	0	3	3	2	2	Intein	splicing	domain
MCM_OB	PF17207.3	gi|257053234|ref|YP_003131067.1|	-	2.5e-36	124.3	0.2	6.7e-36	122.9	0.2	1.8	1	0	0	1	1	1	1	MCM	OB	domain
MCM_lid	PF17855.1	gi|257053234|ref|YP_003131067.1|	-	1.2e-27	96.1	0.2	3.2e-27	94.8	0.2	1.8	1	0	0	1	1	1	1	MCM	AAA-lid	domain
LAGLIDADG_3	PF14528.6	gi|257053234|ref|YP_003131067.1|	-	9.3e-20	70.7	0.0	9.7e-12	45.0	0.0	2.8	2	0	0	2	2	2	2	LAGLIDADG-like	domain
HTH_3	PF01381.22	gi|257053234|ref|YP_003131067.1|	-	5.4e-16	58.4	0.0	3.7e-07	30.1	0.0	2.8	2	0	0	2	2	2	2	Helix-turn-helix
MCM_N	PF14551.6	gi|257053234|ref|YP_003131067.1|	-	9.4e-08	32.6	1.6	3.1e-07	30.9	1.6	1.8	1	0	0	1	1	1	1	MCM	N-terminal	domain
Hint	PF01079.20	gi|257053234|ref|YP_003131067.1|	-	6.2e-07	29.1	0.0	0.04	13.4	0.0	3.1	3	1	0	3	3	3	2	Hint	module
HTH_31	PF13560.6	gi|257053234|ref|YP_003131067.1|	-	1.3e-06	28.6	10.2	2e-05	24.8	0.4	3.7	4	0	0	4	4	3	2	Helix-turn-helix	domain
HTH_19	PF12844.7	gi|257053234|ref|YP_003131067.1|	-	0.0004	20.3	0.0	1.9	8.6	0.0	3.3	3	0	0	3	3	3	2	Helix-turn-helix	domain
Mg_chelatase	PF01078.21	gi|257053234|ref|YP_003131067.1|	-	0.0023	17.3	0.0	2.6	7.4	0.0	3.1	3	0	0	3	3	3	2	Magnesium	chelatase,	subunit	ChlI
E1-E2_ATPase	PF00122.20	gi|257053234|ref|YP_003131067.1|	-	0.0085	15.6	0.0	0.022	14.3	0.0	1.6	1	0	0	1	1	1	1	E1-E2	ATPase
Hom_end	PF05204.14	gi|257053234|ref|YP_003131067.1|	-	0.011	15.8	0.0	0.43	10.8	0.0	2.6	2	0	0	2	2	2	0	Homing	endonuclease
Rv2175c_C	PF18367.1	gi|257053234|ref|YP_003131067.1|	-	0.044	13.9	0.1	0.11	12.6	0.1	1.6	1	0	0	1	1	1	0	Rv2175c	C-terminal	domain	of	unknown	function
TFIIB	PF00382.19	gi|257053235|ref|YP_003131068.1|	-	6.1e-32	109.5	1.3	1.1e-16	60.7	0.1	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|257053235|ref|YP_003131068.1|	-	1.7e-10	40.2	1.5	3e-10	39.4	1.5	1.4	1	0	0	1	1	1	1	TFIIB	zinc-binding
RB_B	PF01857.20	gi|257053235|ref|YP_003131068.1|	-	0.011	15.8	0.0	0.026	14.6	0.0	1.5	2	0	0	2	2	2	0	Retinoblastoma-associated	protein	B	domain
OrfB_Zn_ribbon	PF07282.11	gi|257053235|ref|YP_003131068.1|	-	0.029	14.3	0.5	0.064	13.2	0.5	1.5	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Cyclin_C	PF02984.19	gi|257053235|ref|YP_003131068.1|	-	0.07	13.2	0.1	4.8	7.3	0.0	2.2	2	0	0	2	2	2	0	Cyclin,	C-terminal	domain
HTH_3	PF01381.22	gi|257053235|ref|YP_003131068.1|	-	0.076	13.1	0.0	0.24	11.5	0.0	1.8	1	0	0	1	1	1	0	Helix-turn-helix
Auto_anti-p27	PF06677.12	gi|257053235|ref|YP_003131068.1|	-	0.23	11.6	1.0	0.4	10.9	1.0	1.4	1	0	0	1	1	1	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
HIT	PF01230.23	gi|257053236|ref|YP_003131069.1|	-	1.1e-23	83.8	0.1	1.5e-23	83.4	0.1	1.2	1	0	0	1	1	1	1	HIT	domain
DcpS_C	PF11969.8	gi|257053236|ref|YP_003131069.1|	-	4.7e-12	46.4	0.0	5.9e-12	46.1	0.0	1.1	1	0	0	1	1	1	1	Scavenger	mRNA	decapping	enzyme	C-term	binding
CwfJ_C_1	PF04677.15	gi|257053236|ref|YP_003131069.1|	-	0.019	14.8	0.1	0.04	13.8	0.1	1.6	1	1	0	1	1	1	0	Protein	similar	to	CwfJ	C-terminus	1
DUF4921	PF16268.5	gi|257053237|ref|YP_003131070.1|	-	0.0073	15.2	0.1	0.012	14.5	0.1	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4921)
FG-GAP_2	PF14312.6	gi|257053239|ref|YP_003131072.1|	-	7.9e-27	93.3	33.6	6.1e-12	45.6	3.0	7.3	8	1	0	8	8	8	4	FG-GAP	repeat
AnfO_nitrog	PF09582.10	gi|257053239|ref|YP_003131072.1|	-	0.021	14.1	0.0	43	3.4	0.0	4.4	6	0	0	6	6	6	0	Iron	only	nitrogenase	protein	AnfO	(AnfO_nitrog)
Lactonase	PF10282.9	gi|257053239|ref|YP_003131072.1|	-	0.022	14.0	0.1	0.095	11.9	0.0	2.0	2	0	0	2	2	2	0	Lactonase,	7-bladed	beta-propeller
NAGPA	PF09992.9	gi|257053239|ref|YP_003131072.1|	-	0.028	14.6	0.6	2	8.6	0.0	3.3	3	1	0	3	3	3	0	Phosphodiester	glycosidase
DUF1513	PF07433.11	gi|257053239|ref|YP_003131072.1|	-	0.4	9.7	3.7	5.4	6.0	0.1	3.3	3	1	1	4	4	4	0	Protein	of	unknown	function	(DUF1513)
Phage_holin_3_6	PF07332.11	gi|257053240|ref|YP_003131073.1|	-	0.0038	17.3	6.5	0.0044	17.0	6.5	1.1	1	0	0	1	1	1	1	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
Sdh_cyt	PF01127.22	gi|257053240|ref|YP_003131073.1|	-	0.12	12.4	2.4	0.14	12.2	2.4	1.1	1	0	0	1	1	1	0	Succinate	dehydrogenase/Fumarate	reductase	transmembrane	subunit
Radical_SAM	PF04055.21	gi|257053241|ref|YP_003131074.1|	-	0.00011	22.6	0.1	0.00022	21.6	0.1	1.5	1	0	0	1	1	1	1	Radical	SAM	superfamily
DUF2924	PF11149.8	gi|257053242|ref|YP_003131075.1|	-	0.013	15.8	1.3	0.015	15.7	1.3	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2924)
rve_3	PF13683.6	gi|257053242|ref|YP_003131075.1|	-	0.037	13.8	2.8	1.9	8.4	0.2	2.1	1	1	1	2	2	2	0	Integrase	core	domain
VanZ	PF04892.12	gi|257053243|ref|YP_003131076.1|	-	2.7e-07	31.3	1.0	6e-07	30.2	1.0	1.6	1	1	0	1	1	1	1	VanZ	like	family
DUF423	PF04241.15	gi|257053243|ref|YP_003131076.1|	-	0.028	14.6	0.5	0.072	13.3	0.4	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF423)
DUF5591	PF17884.1	gi|257053244|ref|YP_003131077.1|	-	8e-59	197.9	0.2	1.2e-58	197.4	0.2	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5591)
TGT_C2	PF14810.6	gi|257053244|ref|YP_003131077.1|	-	8.8e-20	70.6	0.0	2.2e-19	69.4	0.0	1.7	1	0	0	1	1	1	1	Patch-forming	domain	C2	of	tRNA-guanine	transglycosylase
TGT	PF01702.18	gi|257053244|ref|YP_003131077.1|	-	2.8e-15	56.3	0.0	1.7e-14	53.8	0.0	2.1	2	1	0	2	2	2	1	Queuine	tRNA-ribosyltransferase
PUA	PF01472.20	gi|257053244|ref|YP_003131077.1|	-	2.7e-12	46.5	0.5	1.1e-11	44.5	0.1	2.2	2	0	0	2	2	2	1	PUA	domain
Sod_Fe_N	PF00081.22	gi|257053245|ref|YP_003131078.1|	-	2.9e-31	107.8	0.6	4.7e-31	107.1	0.6	1.3	1	0	0	1	1	1	1	Iron/manganese	superoxide	dismutases,	alpha-hairpin	domain
Sod_Fe_C	PF02777.18	gi|257053245|ref|YP_003131078.1|	-	4e-27	94.4	0.0	6.7e-27	93.6	0.0	1.4	1	0	0	1	1	1	1	Iron/manganese	superoxide	dismutases,	C-terminal	domain
Flavin_Reduct	PF01613.18	gi|257053246|ref|YP_003131079.1|	-	1.4e-29	103.1	0.0	1.6e-29	102.9	0.0	1.0	1	0	0	1	1	1	1	Flavin	reductase	like	domain
DUF5642	PF18702.1	gi|257053246|ref|YP_003131079.1|	-	0.034	13.9	0.2	0.11	12.3	0.1	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF5642)
HTH_20	PF12840.7	gi|257053247|ref|YP_003131080.1|	-	1.3e-06	28.3	0.0	3.1e-06	27.2	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
FYVE	PF01363.21	gi|257053247|ref|YP_003131080.1|	-	0.13	12.5	1.2	0.21	11.8	0.4	1.7	2	0	0	2	2	2	0	FYVE	zinc	finger
DZR	PF12773.7	gi|257053247|ref|YP_003131080.1|	-	1.3	9.1	5.5	70	3.6	5.5	2.7	1	1	0	1	1	1	0	Double	zinc	ribbon
TF_Zn_Ribbon	PF08271.12	gi|257053247|ref|YP_003131080.1|	-	2.6	7.6	12.6	4.8	6.8	4.1	3.4	2	1	0	2	2	2	0	TFIIB	zinc-binding
Nudix_N_2	PF14803.6	gi|257053247|ref|YP_003131080.1|	-	7.8	6.5	8.0	37	4.3	0.1	3.6	2	1	0	2	2	2	0	Nudix	N-terminal
TGT	PF01702.18	gi|257053248|ref|YP_003131081.1|	-	4.7e-77	259.5	0.0	6.6e-77	259.0	0.0	1.1	1	0	0	1	1	1	1	Queuine	tRNA-ribosyltransferase
GW	PF13457.6	gi|257053249|ref|YP_003131082.1|	-	0.2	12.3	0.0	0.31	11.7	0.0	1.3	1	0	0	1	1	1	0	GW	(Gly-Tryp)	dipeptide	domain
DUF460	PF04312.13	gi|257053250|ref|YP_003131083.1|	-	1.2e-48	164.4	1.1	3e-48	163.1	0.4	2.1	2	0	0	2	2	1	1	Protein	of	unknown	function	(DUF460)
acVLRF1	PF18859.1	gi|257053250|ref|YP_003131083.1|	-	0.00079	19.7	3.6	0.00079	19.7	3.6	4.5	3	1	0	3	3	3	1	Actinobacteria/chloroflexi	VLRF1	release	factor
HMMR_N	PF15905.5	gi|257053250|ref|YP_003131083.1|	-	0.0012	18.3	14.8	0.0012	18.3	14.8	1.6	2	0	0	2	2	1	1	Hyaluronan	mediated	motility	receptor	N-terminal
DUF1664	PF07889.12	gi|257053250|ref|YP_003131083.1|	-	0.0013	18.8	5.6	0.055	13.5	3.6	2.8	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF1664)
Ferritin	PF00210.24	gi|257053250|ref|YP_003131083.1|	-	0.0035	17.3	0.2	0.0035	17.3	0.2	3.2	2	1	1	3	3	2	1	Ferritin-like	domain
TACC_C	PF05010.14	gi|257053250|ref|YP_003131083.1|	-	0.0039	17.0	8.3	0.0039	17.0	8.3	2.3	2	0	0	2	2	2	1	Transforming	acidic	coiled-coil-containing	protein	(TACC),	C-terminal
DUF4763	PF15960.5	gi|257053250|ref|YP_003131083.1|	-	0.0044	16.4	6.8	0.0077	15.6	6.8	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4763)
DUF641	PF04859.12	gi|257053250|ref|YP_003131083.1|	-	0.0045	17.3	3.7	0.0045	17.3	3.7	3.4	2	1	1	3	3	3	1	Plant	protein	of	unknown	function	(DUF641)
SlyX	PF04102.12	gi|257053250|ref|YP_003131083.1|	-	0.0055	17.3	9.6	0.93	10.2	0.7	3.3	1	1	2	3	3	3	3	SlyX
AAA_13	PF13166.6	gi|257053250|ref|YP_003131083.1|	-	0.0065	15.2	6.7	0.0099	14.6	6.7	1.3	1	0	0	1	1	1	1	AAA	domain
Exonuc_VII_L	PF02601.15	gi|257053250|ref|YP_003131083.1|	-	0.0078	15.8	6.4	0.017	14.7	6.1	1.8	1	1	0	1	1	1	1	Exonuclease	VII,	large	subunit
ATG16	PF08614.11	gi|257053250|ref|YP_003131083.1|	-	0.02	15.2	13.2	0.02	15.2	13.2	3.1	2	1	1	3	3	3	0	Autophagy	protein	16	(ATG16)
FAM76	PF16046.5	gi|257053250|ref|YP_003131083.1|	-	0.022	14.1	4.0	0.034	13.5	4.0	1.3	1	0	0	1	1	1	0	FAM76	protein
FPP	PF05911.11	gi|257053250|ref|YP_003131083.1|	-	0.022	13.0	10.1	0.032	12.4	10.1	1.2	1	0	0	1	1	1	0	Filament-like	plant	protein,	long	coiled-coil
Bacillus_HBL	PF05791.11	gi|257053250|ref|YP_003131083.1|	-	0.026	14.3	0.8	0.26	11.1	0.1	2.2	2	0	0	2	2	2	0	Bacillus	haemolytic	enterotoxin	(HBL)
SOGA	PF11365.8	gi|257053250|ref|YP_003131083.1|	-	0.036	15.2	8.0	3.2	9.0	0.3	3.0	2	0	0	2	2	2	0	Protein	SOGA
NPV_P10	PF05531.12	gi|257053250|ref|YP_003131083.1|	-	0.037	14.5	0.9	1.7	9.2	0.3	3.0	2	0	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
BLOC1_2	PF10046.9	gi|257053250|ref|YP_003131083.1|	-	0.041	14.2	5.0	0.43	10.9	0.6	3.0	2	0	0	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Sec2p	PF06428.11	gi|257053250|ref|YP_003131083.1|	-	0.055	13.5	14.7	0.81	9.7	2.4	3.4	2	1	1	3	3	3	0	GDP/GTP	exchange	factor	Sec2p
DUF724	PF05266.14	gi|257053250|ref|YP_003131083.1|	-	0.074	12.9	6.9	0.26	11.1	6.9	2.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
Fib_alpha	PF08702.10	gi|257053250|ref|YP_003131083.1|	-	0.076	13.2	4.9	0.042	14.0	2.2	2.0	2	0	0	2	2	1	0	Fibrinogen	alpha/beta	chain	family
XLF	PF09302.11	gi|257053250|ref|YP_003131083.1|	-	0.095	12.9	0.2	0.35	11.0	0.2	2.0	2	0	0	2	2	1	0	XLF-Cernunnos,	XRcc4-like	factor,	NHEJ	component
DUF4988	PF16378.5	gi|257053250|ref|YP_003131083.1|	-	0.1	12.2	1.4	0.74	9.5	0.2	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function
DASH_Dam1	PF08653.10	gi|257053250|ref|YP_003131083.1|	-	0.12	12.2	0.5	0.62	9.9	0.1	2.3	2	0	0	2	2	2	0	DASH	complex	subunit	Dam1
DUF484	PF04340.12	gi|257053250|ref|YP_003131083.1|	-	0.13	12.0	0.0	0.13	12.0	0.0	3.2	2	1	2	4	4	3	0	Protein	of	unknown	function,	DUF484
FapA	PF03961.13	gi|257053250|ref|YP_003131083.1|	-	0.13	10.8	4.9	0.23	10.0	4.9	1.3	1	0	0	1	1	1	0	Flagellar	Assembly	Protein	A
ILEI	PF15711.5	gi|257053250|ref|YP_003131083.1|	-	0.14	12.6	0.0	0.48	10.9	0.0	1.8	2	0	0	2	2	1	0	Interleukin-like	EMT	inducer
Macoilin	PF09726.9	gi|257053250|ref|YP_003131083.1|	-	0.15	10.6	4.5	0.24	9.9	4.5	1.3	1	0	0	1	1	1	0	Macoilin	family
ADIP	PF11559.8	gi|257053250|ref|YP_003131083.1|	-	0.18	11.9	14.5	2.1	8.4	5.6	2.6	1	1	1	2	2	2	0	Afadin-	and	alpha	-actinin-Binding
Surfac_D-trimer	PF09006.11	gi|257053250|ref|YP_003131083.1|	-	0.19	11.6	0.2	1.4	8.8	0.0	2.3	2	0	0	2	2	2	0	Lung	surfactant	protein	D	coiled-coil	trimerisation
CENP-Q	PF13094.6	gi|257053250|ref|YP_003131083.1|	-	0.28	11.4	30.1	0.15	12.2	10.1	3.3	2	1	1	3	3	2	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
DUF812	PF05667.11	gi|257053250|ref|YP_003131083.1|	-	0.28	10.0	14.2	0.013	14.5	8.5	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF812)
YPEB	PF14620.6	gi|257053250|ref|YP_003131083.1|	-	0.42	9.9	2.6	0.74	9.1	2.6	1.3	1	0	0	1	1	1	0	YpeB	sporulation
COG5	PF10392.9	gi|257053250|ref|YP_003131083.1|	-	0.46	10.7	4.3	4	7.6	0.8	2.3	1	1	1	2	2	2	0	Golgi	transport	complex	subunit	5
Atg14	PF10186.9	gi|257053250|ref|YP_003131083.1|	-	0.46	9.5	9.6	0.79	8.7	9.6	1.3	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
Csm1_N	PF18504.1	gi|257053250|ref|YP_003131083.1|	-	0.48	10.8	16.2	3.2	8.1	2.0	3.8	1	1	2	3	3	3	0	Csm1	N-terminal	domain
TMF_DNA_bd	PF12329.8	gi|257053250|ref|YP_003131083.1|	-	0.53	10.3	17.8	0.21	11.6	3.5	3.2	2	1	1	3	3	2	0	TATA	element	modulatory	factor	1	DNA	binding
BST2	PF16716.5	gi|257053250|ref|YP_003131083.1|	-	0.53	10.9	10.2	2.2	8.9	6.5	2.9	1	1	1	2	2	2	0	Bone	marrow	stromal	antigen	2
DUF3450	PF11932.8	gi|257053250|ref|YP_003131083.1|	-	0.54	9.5	14.8	0.94	8.7	0.7	3.2	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF3450)
DUF16	PF01519.16	gi|257053250|ref|YP_003131083.1|	-	0.55	10.8	7.3	1	9.9	1.8	2.7	1	1	1	2	2	2	0	Protein	of	unknown	function	DUF16
DUF5082	PF16888.5	gi|257053250|ref|YP_003131083.1|	-	0.62	10.4	7.2	11	6.3	1.4	2.8	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF5082)
Spectrin	PF00435.21	gi|257053250|ref|YP_003131083.1|	-	0.63	10.6	20.0	4.3	7.9	2.1	4.5	3	2	1	4	4	4	0	Spectrin	repeat
DUF4407	PF14362.6	gi|257053250|ref|YP_003131083.1|	-	0.63	9.3	16.7	1.6	8.0	15.5	2.4	2	1	0	2	2	1	0	Domain	of	unknown	function	(DUF4407)
FlaC_arch	PF05377.11	gi|257053250|ref|YP_003131083.1|	-	0.65	10.4	5.4	4.1	7.9	0.6	3.1	2	0	0	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
bZIP_1	PF00170.21	gi|257053250|ref|YP_003131083.1|	-	0.72	10.0	19.3	0.13	12.3	1.1	3.1	3	0	0	3	3	2	0	bZIP	transcription	factor
Cep57_CLD	PF14073.6	gi|257053250|ref|YP_003131083.1|	-	1.1	9.3	15.9	7.6	6.5	6.7	2.5	1	1	0	1	1	1	0	Centrosome	localisation	domain	of	Cep57
Nucleo_P87	PF07267.11	gi|257053250|ref|YP_003131083.1|	-	1.3	7.8	7.9	2	7.2	7.9	1.2	1	0	0	1	1	1	0	Nucleopolyhedrovirus	capsid	protein	P87
DASH_Spc34	PF08657.10	gi|257053250|ref|YP_003131083.1|	-	1.5	8.6	10.2	3.1	7.5	10.2	1.5	1	0	0	1	1	1	0	DASH	complex	subunit	Spc34
Tropomyosin	PF00261.20	gi|257053250|ref|YP_003131083.1|	-	1.5	8.1	34.1	0.04	13.3	25.5	2.8	2	1	0	2	2	1	0	Tropomyosin
Spc29	PF17082.5	gi|257053250|ref|YP_003131083.1|	-	1.7	8.4	9.8	6	6.6	1.7	2.8	2	1	1	3	3	2	0	Spindle	Pole	Component	29
Mt_ATP-synt_D	PF05873.12	gi|257053250|ref|YP_003131083.1|	-	2	8.3	7.1	2.9	7.7	1.0	3.1	2	1	1	3	3	3	0	ATP	synthase	D	chain,	mitochondrial	(ATP5H)
Fez1	PF06818.15	gi|257053250|ref|YP_003131083.1|	-	2.3	8.6	24.9	0.1	13.1	17.5	2.4	3	1	0	3	3	1	0	Fez1
V_ATPase_I	PF01496.19	gi|257053250|ref|YP_003131083.1|	-	2.6	5.9	4.2	4.2	5.2	4.2	1.3	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
PMEI	PF04043.15	gi|257053250|ref|YP_003131083.1|	-	3.1	8.1	4.6	19	5.5	0.4	2.7	2	1	1	3	3	2	0	Plant	invertase/pectin	methylesterase	inhibitor
Phage_GP20	PF06810.11	gi|257053250|ref|YP_003131083.1|	-	3.5	7.4	15.2	0.85	9.4	1.3	3.6	2	1	1	3	3	3	0	Phage	minor	structural	protein	GP20
Prefoldin	PF02996.17	gi|257053250|ref|YP_003131083.1|	-	3.5	7.6	11.3	0.73	9.8	1.4	3.1	3	0	0	3	3	2	0	Prefoldin	subunit
HOOK	PF05622.12	gi|257053250|ref|YP_003131083.1|	-	4	5.5	22.6	0.056	11.6	7.0	2.3	2	1	1	3	3	2	0	HOOK	protein
MbeD_MobD	PF04899.12	gi|257053250|ref|YP_003131083.1|	-	4.8	7.4	7.4	2.6	8.2	0.1	3.1	3	0	0	3	3	2	0	MbeD/MobD	like
Tho2	PF11262.8	gi|257053250|ref|YP_003131083.1|	-	5	6.2	10.0	12	5.0	8.8	2.0	1	1	1	2	2	2	0	Transcription	factor/nuclear	export	subunit	protein	2
RPW8	PF05659.11	gi|257053250|ref|YP_003131083.1|	-	5	6.8	6.0	9.6	5.9	0.7	2.8	1	1	1	2	2	2	0	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
Occludin_ELL	PF07303.13	gi|257053250|ref|YP_003131083.1|	-	5.2	7.8	9.6	2	9.2	5.3	2.6	2	1	0	2	2	1	0	Occludin	homology	domain
DivIC	PF04977.15	gi|257053250|ref|YP_003131083.1|	-	5.3	6.9	21.8	0.68	9.7	1.9	3.7	2	1	0	3	3	3	0	Septum	formation	initiator
DASH_Spc19	PF08287.11	gi|257053250|ref|YP_003131083.1|	-	5.7	6.8	17.4	3.6	7.5	14.8	2.0	2	0	0	2	2	1	0	Spc19
TMPIT	PF07851.13	gi|257053250|ref|YP_003131083.1|	-	5.9	6.0	6.3	5.2	6.2	0.8	2.0	1	1	1	2	2	2	0	TMPIT-like	protein
DUF4094	PF13334.6	gi|257053250|ref|YP_003131083.1|	-	6.2	7.3	6.0	4.9	7.6	0.9	2.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4094)
SPATA24	PF15175.6	gi|257053250|ref|YP_003131083.1|	-	6.9	6.5	11.5	0.14	12.0	2.2	2.6	2	1	1	3	3	3	0	Spermatogenesis-associated	protein	24
Prefoldin_2	PF01920.20	gi|257053250|ref|YP_003131083.1|	-	7.1	6.6	18.1	0.97	9.4	2.2	4.0	2	1	2	4	4	3	0	Prefoldin	subunit
CortBP2	PF09727.9	gi|257053250|ref|YP_003131083.1|	-	8.7	6.2	27.2	0.54	10.1	19.1	2.7	2	1	1	3	3	2	0	Cortactin-binding	protein-2
Polysacc_deac_1	PF01522.21	gi|257053251|ref|YP_003131084.1|	-	6.8e-13	48.6	0.0	2e-10	40.6	0.0	2.3	2	0	0	2	2	2	2	Polysaccharide	deacetylase
DUF2334	PF10096.9	gi|257053251|ref|YP_003131084.1|	-	6.1e-06	26.0	0.0	2.2e-05	24.2	0.0	1.8	1	1	1	2	2	2	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2334)
Glyoxalase	PF00903.25	gi|257053252|ref|YP_003131085.1|	-	2.4e-17	63.3	0.2	2.8e-17	63.1	0.2	1.0	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_4	PF13669.6	gi|257053252|ref|YP_003131085.1|	-	1.6e-09	38.0	0.3	2.5e-09	37.4	0.3	1.3	1	1	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_6	PF18029.1	gi|257053252|ref|YP_003131085.1|	-	1.3e-05	26.0	1.7	1.5e-05	25.7	1.7	1.1	1	0	0	1	1	1	1	Glyoxalase-like	domain
Glyoxalase_3	PF13468.6	gi|257053252|ref|YP_003131085.1|	-	0.055	13.6	0.3	1.6	8.8	0.0	2.1	2	0	0	2	2	2	0	Glyoxalase-like	domain
SCP1201-deam	PF14428.6	gi|257053252|ref|YP_003131085.1|	-	0.074	12.9	0.0	0.095	12.6	0.0	1.2	1	0	0	1	1	1	0	SCP1.201-like	deaminase
HisKA_4TM	PF16926.5	gi|257053253|ref|YP_003131086.1|	-	5.9e-15	55.2	3.1	9.7e-15	54.5	3.1	1.3	1	0	0	1	1	1	1	Archaeal	4TM	region	of	histidine	kinase
HATPase_c	PF02518.26	gi|257053253|ref|YP_003131086.1|	-	1e-13	51.8	0.0	2.1e-13	50.7	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.6	gi|257053253|ref|YP_003131086.1|	-	3.4e-10	40.0	0.2	7.4e-10	38.9	0.2	1.7	1	1	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HATPase_c_5	PF14501.6	gi|257053253|ref|YP_003131086.1|	-	4.6e-07	29.7	0.0	9.4e-07	28.7	0.0	1.4	1	0	0	1	1	1	1	GHKL	domain
HisKA	PF00512.25	gi|257053253|ref|YP_003131086.1|	-	0.00076	19.5	1.7	0.0012	18.8	0.1	2.1	1	1	2	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
SPOB_a	PF14689.6	gi|257053253|ref|YP_003131086.1|	-	0.0047	16.6	0.2	0.0093	15.7	0.2	1.6	1	0	0	1	1	1	1	Sensor_kinase_SpoOB-type,	alpha-helical	domain
DUF4244	PF14029.6	gi|257053253|ref|YP_003131086.1|	-	0.2	11.1	2.0	0.6	9.6	2.0	1.8	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4244)
Lactamase_B_2	PF12706.7	gi|257053254|ref|YP_003131087.1|	-	8.4e-23	80.9	1.2	3e-20	72.6	1.2	2.1	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|257053254|ref|YP_003131087.1|	-	6.8e-14	52.3	1.6	1.1e-12	48.4	0.2	2.3	2	1	0	2	2	2	1	Metallo-beta-lactamase	superfamily
Lactamase_B_4	PF13691.6	gi|257053254|ref|YP_003131087.1|	-	0.00011	21.7	0.0	0.0002	21.0	0.0	1.3	1	0	0	1	1	1	1	tRNase	Z	endonuclease
ADH_zinc_N	PF00107.26	gi|257053255|ref|YP_003131088.1|	-	1.3e-24	86.6	0.3	2.2e-24	85.9	0.0	1.6	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
ADH_N	PF08240.12	gi|257053255|ref|YP_003131088.1|	-	5.5e-17	61.6	0.1	9.8e-17	60.8	0.1	1.4	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N_2	PF13602.6	gi|257053255|ref|YP_003131088.1|	-	1.7e-12	48.5	0.0	4.2e-12	47.3	0.0	1.6	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
Glu_dehyd_C	PF16912.5	gi|257053255|ref|YP_003131088.1|	-	0.00084	18.9	0.7	0.022	14.3	0.3	2.6	3	0	0	3	3	3	1	Glucose	dehydrogenase	C-terminus
Peripla_BP_2	PF01497.18	gi|257053256|ref|YP_003131089.1|	-	3.2e-22	79.3	0.2	2.4e-21	76.4	0.0	2.0	2	0	0	2	2	2	1	Periplasmic	binding	protein
TAT_signal	PF10518.9	gi|257053256|ref|YP_003131089.1|	-	0.00072	19.3	0.0	0.0012	18.6	0.0	1.4	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
MGC-24	PF05283.11	gi|257053256|ref|YP_003131089.1|	-	1	9.8	5.8	1.6	9.2	5.8	1.2	1	0	0	1	1	1	0	Multi-glycosylated	core	protein	24	(MGC-24),	sialomucin
Mucin	PF01456.17	gi|257053256|ref|YP_003131089.1|	-	1.1	9.2	22.2	1.8	8.6	22.2	1.2	1	0	0	1	1	1	0	Mucin-like	glycoprotein
Peripla_BP_2	PF01497.18	gi|257053257|ref|YP_003131090.1|	-	3.1e-18	66.2	0.1	4.3e-18	65.7	0.1	1.2	1	0	0	1	1	1	1	Periplasmic	binding	protein
TAT_signal	PF10518.9	gi|257053257|ref|YP_003131090.1|	-	0.039	13.8	0.2	0.063	13.1	0.2	1.3	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Mucin	PF01456.17	gi|257053257|ref|YP_003131090.1|	-	0.25	11.4	15.1	0.48	10.4	15.1	1.4	1	0	0	1	1	1	0	Mucin-like	glycoprotein
ABC_tran	PF00005.27	gi|257053258|ref|YP_003131091.1|	-	1.1e-29	103.6	0.0	1.6e-29	103.2	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
SMC_N	PF02463.19	gi|257053258|ref|YP_003131091.1|	-	2.4e-12	46.8	0.0	8.3e-07	28.7	0.0	2.1	1	1	1	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_21	PF13304.6	gi|257053258|ref|YP_003131091.1|	-	4.2e-11	43.2	2.2	9.5e-05	22.3	0.3	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|257053258|ref|YP_003131091.1|	-	1.4e-05	24.8	0.0	2.5e-05	23.9	0.0	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.6	gi|257053258|ref|YP_003131091.1|	-	3.8e-05	24.0	0.3	0.00013	22.3	0.3	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|257053258|ref|YP_003131091.1|	-	0.00022	21.7	0.7	0.00053	20.4	0.7	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_33	PF13671.6	gi|257053258|ref|YP_003131091.1|	-	0.0003	21.0	0.2	0.00086	19.5	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
ABC_ATPase	PF09818.9	gi|257053258|ref|YP_003131091.1|	-	0.00033	19.6	0.6	0.4	9.4	0.0	2.9	2	1	0	2	2	2	2	Predicted	ATPase	of	the	ABC	class
AAA_23	PF13476.6	gi|257053258|ref|YP_003131091.1|	-	0.00033	21.2	0.0	0.00042	20.9	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|257053258|ref|YP_003131091.1|	-	0.0005	20.5	0.1	0.002	18.6	0.0	1.9	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_30	PF13604.6	gi|257053258|ref|YP_003131091.1|	-	0.00065	19.5	0.3	0.0011	18.7	0.3	1.4	1	1	0	1	1	1	1	AAA	domain
Zeta_toxin	PF06414.12	gi|257053258|ref|YP_003131091.1|	-	0.001	18.4	0.2	0.002	17.4	0.0	1.5	2	0	0	2	2	2	1	Zeta	toxin
AAA_15	PF13175.6	gi|257053258|ref|YP_003131091.1|	-	0.0023	17.7	0.0	0.0056	16.4	0.0	1.6	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_25	PF13481.6	gi|257053258|ref|YP_003131091.1|	-	0.0029	17.2	0.3	0.008	15.8	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
NACHT	PF05729.12	gi|257053258|ref|YP_003131091.1|	-	0.0036	17.2	0.3	0.0073	16.2	0.1	1.6	2	0	0	2	2	2	1	NACHT	domain
ATP_bind_1	PF03029.17	gi|257053258|ref|YP_003131091.1|	-	0.0053	16.6	0.2	0.54	10.0	0.0	2.1	2	0	0	2	2	2	1	Conserved	hypothetical	ATP	binding	protein
RsgA_GTPase	PF03193.16	gi|257053258|ref|YP_003131091.1|	-	0.013	15.5	0.0	0.023	14.6	0.0	1.5	1	0	0	1	1	1	0	RsgA	GTPase
NTPase_1	PF03266.15	gi|257053258|ref|YP_003131091.1|	-	0.032	14.2	1.0	0.42	10.5	0.0	2.2	1	1	0	2	2	2	0	NTPase
AAA_14	PF13173.6	gi|257053258|ref|YP_003131091.1|	-	0.035	14.2	0.0	0.11	12.6	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
AAA_24	PF13479.6	gi|257053258|ref|YP_003131091.1|	-	0.036	13.8	0.1	0.29	10.8	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
ATPase_2	PF01637.18	gi|257053258|ref|YP_003131091.1|	-	0.072	13.0	0.0	0.1	12.5	0.0	1.5	1	1	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
MMR_HSR1	PF01926.23	gi|257053258|ref|YP_003131091.1|	-	0.099	12.7	0.1	3.8	7.6	0.0	2.2	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
TniB	PF05621.11	gi|257053258|ref|YP_003131091.1|	-	0.1	12.0	0.6	0.95	8.8	0.4	2.0	2	0	0	2	2	2	0	Bacterial	TniB	protein
cobW	PF02492.19	gi|257053258|ref|YP_003131091.1|	-	0.1	12.2	0.4	0.24	11.0	0.0	1.8	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
Cytidylate_kin	PF02224.18	gi|257053258|ref|YP_003131091.1|	-	0.1	12.3	0.1	0.2	11.4	0.1	1.4	1	0	0	1	1	1	0	Cytidylate	kinase
TsaE	PF02367.17	gi|257053258|ref|YP_003131091.1|	-	0.11	12.6	0.0	0.2	11.6	0.0	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_5	PF07728.14	gi|257053258|ref|YP_003131091.1|	-	0.12	12.4	0.0	0.26	11.3	0.0	1.6	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
MukB	PF04310.12	gi|257053258|ref|YP_003131091.1|	-	0.17	11.6	1.2	0.77	9.5	0.0	2.0	2	0	0	2	2	2	0	MukB	N-terminal
FecCD	PF01032.18	gi|257053259|ref|YP_003131092.1|	-	1.9e-82	276.7	38.0	1.9e-82	276.7	38.0	1.4	1	1	0	1	1	1	1	FecCD	transport	family
Pyr_redox_2	PF07992.14	gi|257053260|ref|YP_003131093.1|	-	3.3e-07	29.8	0.0	4.4e-07	29.4	0.0	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|257053260|ref|YP_003131093.1|	-	1.5e-05	24.3	2.7	3e-05	23.3	0.1	2.6	3	0	0	3	3	3	1	FAD	binding	domain
GIDA	PF01134.22	gi|257053260|ref|YP_003131093.1|	-	2.1e-05	23.8	0.2	2.7e-05	23.4	0.2	1.3	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
FAD_oxidored	PF12831.7	gi|257053260|ref|YP_003131093.1|	-	3.1e-05	23.5	0.9	0.00011	21.7	0.2	2.0	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.19	gi|257053260|ref|YP_003131093.1|	-	4.4e-05	22.9	1.7	6.7e-05	22.3	0.0	2.1	3	1	0	3	3	3	1	FAD	binding	domain
Pyr_redox_3	PF13738.6	gi|257053260|ref|YP_003131093.1|	-	6.4e-05	22.4	0.0	0.0085	15.4	0.0	2.4	2	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|257053260|ref|YP_003131093.1|	-	0.00026	19.8	0.0	0.00066	18.5	0.0	1.6	2	0	0	2	2	2	1	HI0933-like	protein
NAD_binding_8	PF13450.6	gi|257053260|ref|YP_003131093.1|	-	0.00033	20.8	1.1	0.00047	20.3	0.0	1.9	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|257053260|ref|YP_003131093.1|	-	0.0034	17.0	0.8	0.0034	17.0	0.8	2.5	1	1	1	3	3	3	1	FAD	dependent	oxidoreductase
Pyr_redox	PF00070.27	gi|257053260|ref|YP_003131093.1|	-	0.016	15.7	0.2	0.054	14.1	0.0	2.0	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.17	gi|257053260|ref|YP_003131093.1|	-	0.016	14.4	0.0	0.028	13.7	0.0	1.3	1	0	0	1	1	1	0	Thi4	family
Lycopene_cycl	PF05834.12	gi|257053260|ref|YP_003131093.1|	-	0.02	14.0	1.8	0.05	12.7	0.0	2.2	3	0	0	3	3	3	0	Lycopene	cyclase	protein
AlaDh_PNT_C	PF01262.21	gi|257053260|ref|YP_003131093.1|	-	0.14	11.4	0.0	0.21	10.9	0.0	1.2	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Zip	PF02535.22	gi|257053261|ref|YP_003131094.1|	-	3.8e-15	55.9	18.2	1.7e-11	44.0	10.2	2.2	1	1	0	2	2	2	2	ZIP	Zinc	transporter
PAS_9	PF13426.7	gi|257053262|ref|YP_003131095.1|	-	4.7e-30	103.9	0.1	1.7e-16	60.3	0.0	2.5	2	0	0	2	2	2	2	PAS	domain
PAS	PF00989.25	gi|257053262|ref|YP_003131095.1|	-	6.3e-24	84.2	0.2	8.1e-11	41.9	0.1	2.5	2	0	0	2	2	2	2	PAS	fold
PAS_4	PF08448.10	gi|257053262|ref|YP_003131095.1|	-	3.6e-21	75.5	16.1	3.4e-15	56.2	1.7	3.5	4	0	0	4	4	4	2	PAS	fold
PAS_3	PF08447.12	gi|257053262|ref|YP_003131095.1|	-	1.3e-15	57.4	0.0	1.2e-06	28.7	0.0	2.6	2	0	0	2	2	2	2	PAS	fold
HATPase_c	PF02518.26	gi|257053262|ref|YP_003131095.1|	-	4.6e-11	43.2	0.0	2.5e-10	40.8	0.0	2.1	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.6	gi|257053262|ref|YP_003131095.1|	-	1.5e-10	41.1	0.7	3.7e-10	39.8	0.0	2.0	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
PAS_8	PF13188.7	gi|257053262|ref|YP_003131095.1|	-	1.4e-09	37.7	0.1	0.0017	18.3	0.0	3.0	2	0	0	2	2	2	2	PAS	domain
GAF_3	PF13492.6	gi|257053262|ref|YP_003131095.1|	-	3.5e-06	27.4	0.0	7.6e-06	26.3	0.0	1.6	1	0	0	1	1	1	1	GAF	domain
GAF	PF01590.26	gi|257053262|ref|YP_003131095.1|	-	9.6e-06	26.3	0.3	0.00045	20.9	0.0	3.0	3	0	0	3	3	3	1	GAF	domain
GAF_2	PF13185.6	gi|257053262|ref|YP_003131095.1|	-	1.2e-05	25.6	0.5	0.00017	21.9	0.1	2.7	2	1	1	3	3	3	1	GAF	domain
PAS_10	PF13596.6	gi|257053262|ref|YP_003131095.1|	-	0.0002	21.9	0.1	0.061	13.9	0.1	2.7	2	1	0	2	2	2	1	PAS	domain
HATPase_c_3	PF13589.6	gi|257053262|ref|YP_003131095.1|	-	0.0062	16.4	0.0	0.013	15.4	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA_4TM	PF16926.5	gi|257053262|ref|YP_003131095.1|	-	0.02	14.4	0.0	0.056	13.0	0.0	1.8	1	0	0	1	1	1	0	Archaeal	4TM	region	of	histidine	kinase
HisKA	PF00512.25	gi|257053262|ref|YP_003131095.1|	-	0.44	10.6	3.7	0.21	11.7	0.5	2.2	2	0	0	2	2	2	0	His	Kinase	A	(phospho-acceptor)	domain
TAT_signal	PF10518.9	gi|257053263|ref|YP_003131096.1|	-	0.00074	19.3	2.6	0.0014	18.4	2.6	1.4	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
BPD_transp_2	PF02653.16	gi|257053263|ref|YP_003131096.1|	-	0.12	11.5	0.5	0.17	11.0	0.5	1.1	1	0	0	1	1	1	0	Branched-chain	amino	acid	transport	system	/	permease	component
ETF_QO	PF05187.13	gi|257053264|ref|YP_003131097.1|	-	9.7e-07	28.9	2.2	1.2e-06	28.6	2.2	1.1	1	0	0	1	1	1	1	Electron	transfer	flavoprotein-ubiquinone	oxidoreductase,	4Fe-4S
Fer4_9	PF13187.6	gi|257053264|ref|YP_003131097.1|	-	1.2e-05	25.4	9.9	2.7e-05	24.3	9.9	1.6	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|257053264|ref|YP_003131097.1|	-	0.00044	20.2	14.6	0.00082	19.3	2.1	2.6	2	1	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|257053264|ref|YP_003131097.1|	-	0.0014	18.7	10.6	0.0024	17.9	10.6	1.5	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|257053264|ref|YP_003131097.1|	-	0.002	18.7	10.6	0.016	15.8	11.3	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|257053264|ref|YP_003131097.1|	-	0.0025	18.2	1.1	0.0025	18.2	1.1	2.7	2	1	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|257053264|ref|YP_003131097.1|	-	0.0033	17.5	8.3	0.03	14.4	0.6	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|257053264|ref|YP_003131097.1|	-	0.0081	15.9	15.2	0.021	14.6	1.5	3.2	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|257053264|ref|YP_003131097.1|	-	0.011	15.8	12.9	0.081	13.0	1.1	2.9	2	1	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|257053264|ref|YP_003131097.1|	-	0.069	14.1	8.8	1.9	9.5	0.6	2.7	2	1	1	3	3	3	0	4Fe-4S	double	cluster	binding	domain
Fer4_8	PF13183.6	gi|257053264|ref|YP_003131097.1|	-	0.089	13.3	0.3	0.089	13.3	0.3	2.5	2	1	0	2	2	2	0	4Fe-4S	dicluster	domain
LBR_tudor	PF09465.10	gi|257053264|ref|YP_003131097.1|	-	0.12	12.2	0.1	0.25	11.2	0.1	1.5	1	0	0	1	1	1	0	Lamin-B	receptor	of	TUDOR	domain
Fer4_17	PF13534.6	gi|257053264|ref|YP_003131097.1|	-	0.87	10.2	12.6	14	6.3	12.6	2.5	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|257053264|ref|YP_003131097.1|	-	2.3	9.4	14.7	9.6	7.4	3.6	2.6	2	1	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_13	PF13370.6	gi|257053264|ref|YP_003131097.1|	-	4.9	7.8	11.1	2.6	8.6	3.1	2.3	1	1	1	2	2	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
FAD_binding_2	PF00890.24	gi|257053265|ref|YP_003131098.1|	-	6.9e-14	51.7	2.8	1.3e-08	34.4	0.0	3.1	3	0	0	3	3	3	2	FAD	binding	domain
DAO	PF01266.24	gi|257053265|ref|YP_003131098.1|	-	1.1e-12	48.2	4.4	1.1e-06	28.5	0.6	2.3	1	1	1	2	2	2	2	FAD	dependent	oxidoreductase
FAD_oxidored	PF12831.7	gi|257053265|ref|YP_003131098.1|	-	4.1e-09	36.3	0.1	6.3e-09	35.7	0.1	1.2	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|257053265|ref|YP_003131098.1|	-	6.5e-09	35.0	0.1	1.6e-08	33.7	0.1	1.6	1	1	0	1	1	1	1	HI0933-like	protein
Pyr_redox_2	PF07992.14	gi|257053265|ref|YP_003131098.1|	-	1.2e-08	34.6	0.0	1.5e-08	34.2	0.0	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.17	gi|257053265|ref|YP_003131098.1|	-	4.3e-08	32.7	0.0	5e-06	25.9	0.1	2.2	2	0	0	2	2	2	1	Thi4	family
GIDA	PF01134.22	gi|257053265|ref|YP_003131098.1|	-	7.6e-08	31.8	0.2	2.2e-07	30.3	0.2	1.7	1	1	0	1	1	1	1	Glucose	inhibited	division	protein	A
FAD_binding_3	PF01494.19	gi|257053265|ref|YP_003131098.1|	-	1e-07	31.6	7.6	4.6e-07	29.4	7.6	2.0	1	1	0	1	1	1	1	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|257053265|ref|YP_003131098.1|	-	8e-07	29.2	0.0	8e-06	26.0	0.0	2.5	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox	PF00070.27	gi|257053265|ref|YP_003131098.1|	-	0.00034	21.1	0.4	0.23	12.1	0.4	2.7	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Lycopene_cycl	PF05834.12	gi|257053265|ref|YP_003131098.1|	-	0.00039	19.6	0.6	0.0041	16.2	0.6	2.1	1	1	0	1	1	1	1	Lycopene	cyclase	protein
Pyr_redox_3	PF13738.6	gi|257053265|ref|YP_003131098.1|	-	0.01	15.1	0.4	0.076	12.2	0.3	2.0	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Trp_halogenase	PF04820.14	gi|257053265|ref|YP_003131098.1|	-	0.015	14.2	0.3	2.8	6.7	0.0	2.2	1	1	1	2	2	2	0	Tryptophan	halogenase
GMC_oxred_N	PF00732.19	gi|257053265|ref|YP_003131098.1|	-	0.027	13.8	0.0	1.8	7.8	0.0	2.2	2	0	0	2	2	2	0	GMC	oxidoreductase
3HCDH_N	PF02737.18	gi|257053265|ref|YP_003131098.1|	-	0.086	12.7	0.3	0.18	11.7	0.3	1.5	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_9	PF13454.6	gi|257053265|ref|YP_003131098.1|	-	0.11	12.5	1.0	1.7	8.6	1.0	2.3	1	1	0	1	1	1	0	FAD-NAD(P)-binding
ETF	PF01012.21	gi|257053266|ref|YP_003131099.1|	-	4.4e-44	150.5	0.0	7e-44	149.9	0.0	1.3	1	0	0	1	1	1	1	Electron	transfer	flavoprotein	domain
ETF_alpha	PF00766.19	gi|257053266|ref|YP_003131099.1|	-	8e-33	112.3	0.1	1.5e-32	111.5	0.1	1.5	1	0	0	1	1	1	1	Electron	transfer	flavoprotein	FAD-binding	domain
ETF	PF01012.21	gi|257053267|ref|YP_003131100.1|	-	3.5e-40	137.8	2.8	4.4e-40	137.5	2.8	1.2	1	0	0	1	1	1	1	Electron	transfer	flavoprotein	domain
GYD	PF08734.11	gi|257053268|ref|YP_003131101.1|	-	6.6e-28	96.5	0.0	7.3e-28	96.4	0.0	1.0	1	0	0	1	1	1	1	GYD	domain
OrfB_IS605	PF01385.19	gi|257053269|ref|YP_003131102.1|	-	5.9e-23	81.4	0.2	1.5e-22	80.1	0.2	1.7	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|257053269|ref|YP_003131102.1|	-	2.1e-22	78.8	0.2	4e-22	77.9	0.2	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
HTH_OrfB_IS605	PF12323.8	gi|257053269|ref|YP_003131102.1|	-	1.3e-12	47.0	0.5	2.7e-12	46.0	0.5	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
APG6_N	PF17675.1	gi|257053269|ref|YP_003131102.1|	-	0.013	16.0	1.1	2.8	8.5	0.1	2.4	2	0	0	2	2	2	0	Apg6	coiled-coil	region
DZR	PF12773.7	gi|257053269|ref|YP_003131102.1|	-	0.024	14.6	1.0	0.045	13.8	1.0	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
HypA	PF01155.19	gi|257053269|ref|YP_003131102.1|	-	0.059	13.4	0.1	0.13	12.3	0.1	1.6	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Rubredoxin_2	PF18073.1	gi|257053269|ref|YP_003131102.1|	-	0.068	12.9	2.7	0.19	11.5	2.7	1.8	1	1	0	1	1	1	0	Rubredoxin	metal	binding	domain
FRB_dom	PF08771.11	gi|257053269|ref|YP_003131102.1|	-	0.12	12.8	0.8	1.5	9.3	0.1	2.7	3	1	0	3	3	3	0	FKBP12-rapamycin	binding	domain
Zn_Tnp_IS91	PF14319.6	gi|257053269|ref|YP_003131102.1|	-	0.14	12.2	1.3	0.4	10.7	1.3	1.8	1	1	0	1	1	1	0	Transposase	zinc-binding	domain
zinc_ribbon_2	PF13240.6	gi|257053269|ref|YP_003131102.1|	-	1	9.2	3.7	16	5.3	0.2	2.7	3	0	0	3	3	3	0	zinc-ribbon	domain
UPF0547	PF10571.9	gi|257053269|ref|YP_003131102.1|	-	1.7	8.8	4.0	4.7	7.4	0.4	2.6	3	0	0	3	3	3	0	Uncharacterised	protein	family	UPF0547
zf-ribbon_3	PF13248.6	gi|257053269|ref|YP_003131102.1|	-	7.5	6.1	8.0	16	5.0	1.1	2.2	1	1	1	2	2	2	0	zinc-ribbon	domain
Y1_Tnp	PF01797.16	gi|257053270|ref|YP_003131103.1|	-	1.2e-37	128.7	0.1	1.3e-37	128.5	0.1	1.0	1	0	0	1	1	1	1	Transposase	IS200	like
T2SSM	PF04612.12	gi|257053270|ref|YP_003131103.1|	-	0.049	13.7	0.0	0.065	13.3	0.0	1.1	1	0	0	1	1	1	0	Type	II	secretion	system	(T2SS),	protein	M
IQ_SEC7_PH	PF16453.5	gi|257053270|ref|YP_003131103.1|	-	0.083	12.9	0.0	0.14	12.2	0.0	1.4	1	1	0	1	1	1	0	PH	domain
HATPase_c	PF02518.26	gi|257053271|ref|YP_003131104.1|	-	7.5e-14	52.2	0.0	1.5e-13	51.2	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_4	PF08448.10	gi|257053271|ref|YP_003131104.1|	-	1.5e-09	38.1	0.1	9.7e-09	35.5	0.0	2.5	3	1	0	3	3	3	1	PAS	fold
HisKA	PF00512.25	gi|257053271|ref|YP_003131104.1|	-	1.1e-08	35.0	0.0	2.2e-08	34.0	0.0	1.6	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_2	PF13581.6	gi|257053271|ref|YP_003131104.1|	-	4.8e-05	23.3	0.0	0.00057	19.8	0.0	2.3	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
DUF359	PF04019.12	gi|257053272|ref|YP_003131105.1|	-	1.8e-39	134.2	0.0	2.2e-39	133.9	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF359)
Spt4	PF06093.13	gi|257053273|ref|YP_003131106.1|	-	4.5e-14	52.3	0.2	5.2e-14	52.1	0.2	1.1	1	0	0	1	1	1	1	Spt4/RpoE2	zinc	finger
DZR	PF12773.7	gi|257053273|ref|YP_003131106.1|	-	0.015	15.4	0.9	0.02	14.9	0.9	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
NOB1_Zn_bind	PF08772.11	gi|257053273|ref|YP_003131106.1|	-	0.028	14.6	0.1	0.039	14.1	0.1	1.2	1	0	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
zf-RRN7	PF11781.8	gi|257053273|ref|YP_003131106.1|	-	0.037	13.7	6.2	2	8.1	2.2	2.2	2	0	0	2	2	2	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
HypA	PF01155.19	gi|257053273|ref|YP_003131106.1|	-	0.071	13.1	0.4	0.081	12.9	0.4	1.2	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn-ribbon_8	PF09723.10	gi|257053273|ref|YP_003131106.1|	-	0.15	12.2	5.1	0.4	10.8	5.1	1.7	1	1	0	1	1	1	0	Zinc	ribbon	domain
Rubredoxin_2	PF18073.1	gi|257053273|ref|YP_003131106.1|	-	0.29	10.9	6.1	0.83	9.4	0.3	2.2	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
Nudix_N_2	PF14803.6	gi|257053273|ref|YP_003131106.1|	-	0.38	10.7	8.4	4.1	7.4	2.5	2.2	1	1	1	2	2	2	0	Nudix	N-terminal
zf_UBZ	PF18439.1	gi|257053273|ref|YP_003131106.1|	-	0.92	9.2	4.1	8.8	6.0	0.5	2.3	1	1	1	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
S1	PF00575.23	gi|257053274|ref|YP_003131107.1|	-	1.1e-15	57.7	0.2	1.1e-15	57.7	0.2	1.7	2	0	0	2	2	2	1	S1	RNA	binding	domain
SHS2_Rpb7-N	PF03876.17	gi|257053274|ref|YP_003131107.1|	-	4.2e-15	55.9	0.1	6.5e-15	55.3	0.1	1.3	1	0	0	1	1	1	1	SHS2	domain	found	in	N	terminus	of	Rpb7p/Rpc25p/MJ0397
FtsK_SpoIIIE_N	PF12538.8	gi|257053274|ref|YP_003131107.1|	-	0.035	14.3	0.0	0.9	9.8	0.0	2.3	2	0	0	2	2	2	0	DNA	transporter
S1_2	PF13509.6	gi|257053274|ref|YP_003131107.1|	-	0.11	12.6	0.0	1.2	9.2	0.0	2.3	1	1	0	1	1	1	0	S1	domain
PIN_9	PF18477.1	gi|257053275|ref|YP_003131108.1|	-	1.1e-41	141.7	0.6	1.3e-41	141.6	0.6	1.0	1	0	0	1	1	1	1	PIN	like	domain
PIN_4	PF13638.6	gi|257053275|ref|YP_003131108.1|	-	4.1e-06	27.1	0.0	1.3e-05	25.5	0.0	1.8	1	1	0	1	1	1	1	PIN	domain
DUF188	PF02639.14	gi|257053275|ref|YP_003131108.1|	-	0.00095	18.8	0.2	0.0015	18.2	0.2	1.2	1	0	0	1	1	1	1	Uncharacterized	BCR,	YaiI/YqxD	family	COG1671
DUF2726	PF10881.8	gi|257053275|ref|YP_003131108.1|	-	0.058	13.3	0.1	0.3	11.0	0.1	1.9	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2726)
GTP_EFTU	PF00009.27	gi|257053276|ref|YP_003131109.1|	-	2.5e-30	105.5	2.3	7.1e-30	104.0	2.3	1.7	1	1	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
eIF2_C	PF09173.11	gi|257053276|ref|YP_003131109.1|	-	5.5e-30	103.5	0.1	1.2e-29	102.4	0.1	1.6	1	0	0	1	1	1	1	Initiation	factor	eIF2	gamma,	C	terminal
GTP_EFTU_D2	PF03144.25	gi|257053276|ref|YP_003131109.1|	-	7.4e-07	29.5	0.8	2.2e-06	27.9	0.8	1.9	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	2
RsgA_GTPase	PF03193.16	gi|257053276|ref|YP_003131109.1|	-	6.6e-05	22.9	0.3	0.0094	15.9	0.1	2.3	2	0	0	2	2	2	1	RsgA	GTPase
MMR_HSR1	PF01926.23	gi|257053276|ref|YP_003131109.1|	-	6.8e-05	22.9	0.0	0.0002	21.4	0.0	1.8	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
SRPRB	PF09439.10	gi|257053276|ref|YP_003131109.1|	-	0.019	14.4	0.1	0.57	9.6	0.1	2.2	1	1	0	1	1	1	0	Signal	recognition	particle	receptor	beta	subunit
Dynamin_N	PF00350.23	gi|257053276|ref|YP_003131109.1|	-	0.062	13.4	0.0	0.24	11.5	0.0	2.0	1	1	0	2	2	2	0	Dynamin	family
FeoB_N	PF02421.18	gi|257053276|ref|YP_003131109.1|	-	0.063	12.8	0.8	7.2	6.1	0.0	2.4	2	1	0	2	2	2	0	Ferrous	iron	transport	protein	B
MMR_HSR1_Xtn	PF16897.5	gi|257053276|ref|YP_003131109.1|	-	0.065	13.3	0.0	0.12	12.3	0.0	1.5	1	0	0	1	1	1	0	C-terminal	region	of	MMR_HSR1	domain
PduV-EutP	PF10662.9	gi|257053276|ref|YP_003131109.1|	-	0.098	12.4	0.3	1.1	9.0	0.0	2.1	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
MS_channel	PF00924.18	gi|257053277|ref|YP_003131110.1|	-	1.2e-14	54.3	3.0	2.1e-14	53.6	3.0	1.3	1	0	0	1	1	1	1	Mechanosensitive	ion	channel
TM_helix	PF05552.12	gi|257053277|ref|YP_003131110.1|	-	0.00037	20.4	0.1	0.00037	20.4	0.1	2.7	3	0	0	3	3	3	1	Conserved	TM	helix
DUF4233	PF14017.6	gi|257053279|ref|YP_003131112.1|	-	0.029	14.7	1.9	0.042	14.2	1.9	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF4233)
CCB1	PF12046.8	gi|257053279|ref|YP_003131112.1|	-	0.035	13.4	0.4	0.037	13.4	0.4	1.0	1	0	0	1	1	1	0	Cofactor	assembly	of	complex	C	subunit	B
Glycos_trans_3N	PF02885.17	gi|257053279|ref|YP_003131112.1|	-	0.042	13.7	0.1	0.066	13.1	0.1	1.4	1	0	0	1	1	1	0	Glycosyl	transferase	family,	helical	bundle	domain
IncD	PF17628.2	gi|257053279|ref|YP_003131112.1|	-	0.11	12.3	2.1	0.13	12.0	2.1	1.0	1	0	0	1	1	1	0	Inclusion	membrane	protein	D
SecE	PF00584.20	gi|257053279|ref|YP_003131112.1|	-	1.4	8.9	5.5	6	6.9	1.1	2.1	2	0	0	2	2	2	0	SecE/Sec61-gamma	subunits	of	protein	translocation	complex
Lactamase_B_2	PF12706.7	gi|257053280|ref|YP_003131113.1|	-	6.3e-25	87.9	0.3	8.9e-25	87.4	0.3	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|257053280|ref|YP_003131113.1|	-	1.5e-09	38.1	2.7	2.5e-09	37.4	2.7	1.5	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_3	PF13483.6	gi|257053280|ref|YP_003131113.1|	-	0.059	13.3	0.1	0.14	12.1	0.1	1.7	1	1	0	1	1	1	0	Beta-lactamase	superfamily	domain
Aldo_ket_red	PF00248.21	gi|257053281|ref|YP_003131114.1|	-	3.4e-58	197.2	0.0	7.6e-56	189.5	0.0	2.0	1	1	0	1	1	1	1	Aldo/keto	reductase	family
PHBC_N	PF12551.8	gi|257053281|ref|YP_003131114.1|	-	0.016	15.0	0.1	0.037	13.8	0.1	1.6	1	0	0	1	1	1	0	Poly-beta-hydroxybutyrate	polymerase	N	terminal
LacI	PF00356.21	gi|257053281|ref|YP_003131114.1|	-	0.025	14.4	0.0	0.047	13.5	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	lacI	family
HTH_Tnp_1	PF01527.20	gi|257053281|ref|YP_003131114.1|	-	0.044	14.1	0.0	3.8	7.9	0.0	2.6	2	0	0	2	2	2	0	Transposase
HTH_28	PF13518.6	gi|257053281|ref|YP_003131114.1|	-	0.14	12.3	0.0	0.34	11.1	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
AAA	PF00004.29	gi|257053282|ref|YP_003131115.1|	-	2.4e-38	131.6	0.0	5.7e-38	130.3	0.0	1.7	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|257053282|ref|YP_003131115.1|	-	1.5e-09	37.5	0.0	4e-09	36.1	0.0	1.7	1	0	0	1	1	1	1	AAA+	lid	domain
AAA_5	PF07728.14	gi|257053282|ref|YP_003131115.1|	-	8.6e-07	29.0	0.1	6.7e-06	26.1	0.0	2.6	2	1	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA_16	PF13191.6	gi|257053282|ref|YP_003131115.1|	-	2.3e-05	24.9	0.4	0.00034	21.0	0.4	2.9	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|257053282|ref|YP_003131115.1|	-	0.00019	21.7	0.2	0.01	16.1	0.0	3.0	2	1	1	3	3	3	1	AAA	domain
AAA_33	PF13671.6	gi|257053282|ref|YP_003131115.1|	-	0.00022	21.4	0.0	0.00076	19.7	0.0	2.0	1	0	0	1	1	1	1	AAA	domain
RuvB_N	PF05496.12	gi|257053282|ref|YP_003131115.1|	-	0.00052	19.8	0.0	0.0014	18.4	0.0	1.9	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_18	PF13238.6	gi|257053282|ref|YP_003131115.1|	-	0.00055	20.5	0.1	0.0038	17.8	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
AAA_7	PF12775.7	gi|257053282|ref|YP_003131115.1|	-	0.00089	18.8	0.0	0.0018	17.8	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	dynein	motor	region
TIP49	PF06068.13	gi|257053282|ref|YP_003131115.1|	-	0.0014	17.9	0.0	0.0033	16.7	0.0	1.6	1	1	0	1	1	1	1	TIP49	P-loop	domain
AAA_28	PF13521.6	gi|257053282|ref|YP_003131115.1|	-	0.0021	18.3	0.3	0.0093	16.2	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_2	PF07724.14	gi|257053282|ref|YP_003131115.1|	-	0.0023	18.0	0.0	0.0069	16.5	0.0	1.8	1	0	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
Cytidylate_kin2	PF13189.6	gi|257053282|ref|YP_003131115.1|	-	0.0033	17.6	0.2	0.014	15.5	0.0	2.0	2	0	0	2	2	2	1	Cytidylate	kinase-like	family
IstB_IS21	PF01695.17	gi|257053282|ref|YP_003131115.1|	-	0.0034	17.1	0.0	0.0099	15.6	0.0	1.8	1	1	0	1	1	1	1	IstB-like	ATP	binding	protein
T2SSE	PF00437.20	gi|257053282|ref|YP_003131115.1|	-	0.0038	16.3	0.0	0.0076	15.3	0.0	1.4	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
Cytidylate_kin	PF02224.18	gi|257053282|ref|YP_003131115.1|	-	0.0067	16.2	0.3	0.049	13.4	0.0	2.4	2	1	1	3	3	3	1	Cytidylate	kinase
DUF815	PF05673.13	gi|257053282|ref|YP_003131115.1|	-	0.0077	15.4	0.0	0.013	14.6	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
SKI	PF01202.22	gi|257053282|ref|YP_003131115.1|	-	0.012	15.7	0.0	0.029	14.5	0.0	1.6	1	0	0	1	1	1	0	Shikimate	kinase
AAA_17	PF13207.6	gi|257053282|ref|YP_003131115.1|	-	0.012	16.0	0.1	0.059	13.8	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_11	PF13086.6	gi|257053282|ref|YP_003131115.1|	-	0.013	15.3	0.0	0.022	14.5	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Mg_chelatase	PF01078.21	gi|257053282|ref|YP_003131115.1|	-	0.014	14.8	0.0	0.026	13.9	0.0	1.5	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
MMR_HSR1	PF01926.23	gi|257053282|ref|YP_003131115.1|	-	0.021	14.9	0.0	0.06	13.4	0.0	1.8	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
ABC_tran	PF00005.27	gi|257053282|ref|YP_003131115.1|	-	0.025	15.1	0.0	0.071	13.6	0.0	1.8	2	0	0	2	2	1	0	ABC	transporter
AAA_25	PF13481.6	gi|257053282|ref|YP_003131115.1|	-	0.027	14.1	0.0	0.075	12.6	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_3	PF07726.11	gi|257053282|ref|YP_003131115.1|	-	0.03	14.2	0.0	0.062	13.2	0.0	1.6	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
RNA_helicase	PF00910.22	gi|257053282|ref|YP_003131115.1|	-	0.059	13.8	0.0	0.14	12.5	0.0	1.7	1	0	0	1	1	1	0	RNA	helicase
AAA_8	PF12780.7	gi|257053282|ref|YP_003131115.1|	-	0.095	12.0	0.0	0.25	10.6	0.0	1.6	2	0	0	2	2	2	0	P-loop	containing	dynein	motor	region	D4
Sigma54_activ_2	PF14532.6	gi|257053282|ref|YP_003131115.1|	-	0.11	12.6	0.0	0.22	11.6	0.0	1.6	1	0	0	1	1	1	0	Sigma-54	interaction	domain
ResIII	PF04851.15	gi|257053282|ref|YP_003131115.1|	-	0.13	12.3	0.0	0.22	11.5	0.0	1.4	1	0	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
SAICAR_synt	PF01259.18	gi|257053283|ref|YP_003131116.1|	-	1.6e-23	83.6	0.0	7.8e-23	81.4	0.0	1.8	1	1	0	1	1	1	1	SAICAR	synthetase
DZR	PF12773.7	gi|257053284|ref|YP_003131117.1|	-	0.0035	17.3	2.4	0.0038	17.2	2.4	1.1	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-HYPF	PF07503.12	gi|257053284|ref|YP_003131117.1|	-	0.018	14.8	2.4	0.028	14.2	2.4	1.4	1	1	0	1	1	1	0	HypF	finger
Formyl_trans_N	PF00551.19	gi|257053286|ref|YP_003131119.1|	-	9.6e-43	146.0	0.0	1.8e-42	145.2	0.0	1.4	1	0	0	1	1	1	1	Formyl	transferase
ACT_6	PF13740.6	gi|257053286|ref|YP_003131119.1|	-	9.3e-11	41.6	0.6	2.1e-10	40.4	0.6	1.5	1	0	0	1	1	1	1	ACT	domain
ACT	PF01842.25	gi|257053286|ref|YP_003131119.1|	-	6.6e-06	25.8	2.6	8e-06	25.5	0.5	2.3	3	0	0	3	3	3	1	ACT	domain
ACT_4	PF13291.6	gi|257053286|ref|YP_003131119.1|	-	0.00053	20.5	0.2	0.0015	19.0	0.1	1.8	1	1	0	1	1	1	1	ACT	domain
OB_aCoA_assoc	PF01796.17	gi|257053286|ref|YP_003131119.1|	-	0.078	13.0	0.1	0.41	10.7	0.1	2.2	1	1	1	2	2	2	0	DUF35	OB-fold	domain,	acyl-CoA-associated
Proton_antipo_M	PF00361.20	gi|257053287|ref|YP_003131120.1|	-	1.1e-70	238.1	15.4	1.1e-70	238.1	15.4	1.6	2	0	0	2	2	2	1	Proton-conducting	membrane	transporter
Proton_antipo_N	PF00662.20	gi|257053287|ref|YP_003131120.1|	-	2e-08	34.2	0.2	2e-08	34.2	0.2	2.5	2	0	0	2	2	2	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
Oxidored_q2	PF00420.24	gi|257053288|ref|YP_003131121.1|	-	4.4e-11	42.3	10.6	2.6e-10	39.9	10.6	1.8	1	1	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
DUF2207	PF09972.9	gi|257053288|ref|YP_003131121.1|	-	7.8	5.1	5.3	8.7	5.0	5.3	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
DUF4418	PF14387.6	gi|257053288|ref|YP_003131121.1|	-	8.8	6.6	10.9	44	4.3	10.9	2.0	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4418)
Oxidored_q3	PF00499.20	gi|257053289|ref|YP_003131122.1|	-	1.9e-09	37.4	15.6	2.4e-09	37.1	15.6	1.1	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	6
DUF4040	PF13244.6	gi|257053289|ref|YP_003131122.1|	-	4.6e-05	23.5	18.2	4.6e-05	23.5	18.2	3.0	3	1	1	4	4	4	1	Domain	of	unknown	function	(DUF4040)
DUF2244	PF10003.9	gi|257053289|ref|YP_003131122.1|	-	0.05	13.3	6.2	0.084	12.5	5.5	1.8	1	1	0	1	1	1	0	Integral	membrane	protein	(DUF2244)
Proton_antipo_M	PF00361.20	gi|257053290|ref|YP_003131123.1|	-	4.3e-62	210.0	15.8	4.3e-62	210.0	15.8	1.6	2	0	0	2	2	2	1	Proton-conducting	membrane	transporter
DUF4514	PF14986.6	gi|257053290|ref|YP_003131123.1|	-	0.15	12.1	1.1	5.7	7.0	0.4	3.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4514)
HycI	PF01750.18	gi|257053291|ref|YP_003131124.1|	-	3.4e-15	56.0	0.0	4.4e-15	55.7	0.0	1.1	1	0	0	1	1	1	1	Hydrogenase	maturation	protease
Fer4	PF00037.27	gi|257053292|ref|YP_003131125.1|	-	7.3e-13	47.7	14.0	4.4e-08	32.6	2.4	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|257053292|ref|YP_003131125.1|	-	2.5e-12	47.2	22.6	3.8e-10	40.2	12.0	1.6	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|257053292|ref|YP_003131125.1|	-	2.2e-10	40.1	14.9	1.5e-07	31.2	4.2	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|257053292|ref|YP_003131125.1|	-	2.7e-09	37.8	2.1	7.5e-05	23.6	0.3	2.3	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_9	PF13187.6	gi|257053292|ref|YP_003131125.1|	-	2.9e-09	37.0	10.9	4.2e-09	36.4	10.9	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|257053292|ref|YP_003131125.1|	-	5.9e-08	32.7	10.8	1.4e-07	31.5	11.0	1.5	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|257053292|ref|YP_003131125.1|	-	7e-06	26.1	8.7	1.1e-05	25.5	8.7	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|257053292|ref|YP_003131125.1|	-	7.7e-06	25.7	12.1	0.0038	17.2	3.0	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_22	PF17179.4	gi|257053292|ref|YP_003131125.1|	-	1.3e-05	26.0	3.2	0.075	13.9	0.3	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|257053292|ref|YP_003131125.1|	-	0.00038	20.8	13.5	0.1	13.2	2.6	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|257053292|ref|YP_003131125.1|	-	0.00095	19.7	14.8	0.026	15.0	2.9	2.2	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|257053292|ref|YP_003131125.1|	-	0.0012	19.2	13.5	0.082	13.4	2.9	2.2	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|257053292|ref|YP_003131125.1|	-	0.0037	18.1	3.9	0.0037	18.1	3.9	2.3	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_15	PF13459.6	gi|257053292|ref|YP_003131125.1|	-	0.11	13.2	16.2	0.21	12.4	3.0	3.1	1	1	1	2	2	2	0	4Fe-4S	single	cluster	domain
PCYCGC	PF13798.6	gi|257053292|ref|YP_003131125.1|	-	0.19	11.6	4.2	0.23	11.3	4.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	with	PCYCGC	motif
NADHdh	PF00146.21	gi|257053293|ref|YP_003131126.1|	-	3.5e-69	233.4	11.4	4.3e-69	233.1	11.4	1.0	1	0	0	1	1	1	1	NADH	dehydrogenase
Complex1_49kDa	PF00346.19	gi|257053294|ref|YP_003131127.1|	-	1.1e-67	228.0	0.2	5e-66	222.6	0.2	2.1	1	1	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	49	Kd	subunit
NiFeSe_Hases	PF00374.19	gi|257053294|ref|YP_003131127.1|	-	4.9e-16	58.7	1.2	3e-12	46.2	0.0	2.8	3	0	0	3	3	3	2	Nickel-dependent	hydrogenase
Complex1_30kDa	PF00329.19	gi|257053295|ref|YP_003131128.1|	-	3.7e-26	92.1	0.0	4.8e-26	91.8	0.0	1.1	1	0	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	30	Kd	subunit
Peripla_BP_4	PF13407.6	gi|257053295|ref|YP_003131128.1|	-	0.004	16.8	0.0	0.0052	16.4	0.0	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein	domain
Nup35_RRM_2	PF14605.6	gi|257053295|ref|YP_003131128.1|	-	0.026	14.5	0.1	0.042	13.9	0.1	1.3	1	0	0	1	1	1	0	Nup53/35/40-type	RNA	recognition	motif
AP_endonuc_2	PF01261.24	gi|257053295|ref|YP_003131128.1|	-	0.048	13.1	0.1	0.074	12.5	0.0	1.4	1	1	0	1	1	1	0	Xylose	isomerase-like	TIM	barrel
Oxidored_q6	PF01058.22	gi|257053296|ref|YP_003131129.1|	-	2.9e-28	98.3	0.4	4.1e-28	97.8	0.4	1.2	1	0	0	1	1	1	1	NADH	ubiquinone	oxidoreductase,	20	Kd	subunit
VirC2	PF07181.11	gi|257053296|ref|YP_003131129.1|	-	0.18	11.2	0.2	0.28	10.6	0.2	1.3	1	0	0	1	1	1	0	VirC2	protein
PurS	PF02700.14	gi|257053298|ref|YP_003131131.1|	-	3.4e-26	91.2	0.1	3.8e-26	91.1	0.1	1.0	1	0	0	1	1	1	1	Phosphoribosylformylglycinamidine	(FGAM)	synthase
AP_endonuc_2	PF01261.24	gi|257053298|ref|YP_003131131.1|	-	0.018	14.5	0.1	0.021	14.3	0.1	1.0	1	0	0	1	1	1	0	Xylose	isomerase-like	TIM	barrel
pXO2-72	PF17443.2	gi|257053298|ref|YP_003131131.1|	-	0.027	14.7	0.1	1.8	8.9	0.0	2.1	1	1	1	2	2	2	0	Uncharacterized	protein	pXO2-72
DUF5505	PF17610.2	gi|257053298|ref|YP_003131131.1|	-	0.035	14.1	0.0	0.039	14.0	0.0	1.0	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5505)
GATase_5	PF13507.6	gi|257053299|ref|YP_003131132.1|	-	8.2e-46	156.2	0.0	1e-45	155.9	0.0	1.1	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
GATase	PF00117.28	gi|257053299|ref|YP_003131132.1|	-	2.1e-07	30.9	0.0	2.4e-07	30.7	0.0	1.2	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
GATase_3	PF07685.14	gi|257053299|ref|YP_003131132.1|	-	1.6e-06	27.8	0.0	2.9e-06	27.0	0.0	1.4	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
DJ-1_PfpI	PF01965.24	gi|257053299|ref|YP_003131132.1|	-	6.6e-05	22.8	0.0	8.6e-05	22.4	0.0	1.2	1	0	0	1	1	1	1	DJ-1/PfpI	family
Peptidase_C26	PF07722.13	gi|257053299|ref|YP_003131132.1|	-	0.09	12.5	0.0	0.16	11.7	0.0	1.3	1	0	0	1	1	1	0	Peptidase	C26
SBP_bac_5	PF00496.22	gi|257053300|ref|YP_003131133.1|	-	2.6e-38	132.0	0.0	4.3e-38	131.2	0.0	1.3	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
CBS	PF00571.28	gi|257053301|ref|YP_003131134.1|	-	1.4e-23	83.0	5.3	2.6e-11	43.8	1.7	2.1	2	0	0	2	2	2	2	CBS	domain
DUF309	PF03745.14	gi|257053302|ref|YP_003131135.1|	-	2.2e-16	59.3	0.0	3.7e-16	58.6	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF309)
PMT_2	PF13231.6	gi|257053303|ref|YP_003131136.1|	-	8e-13	48.9	12.9	8e-13	48.9	12.9	2.5	3	1	0	3	3	3	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
PMT	PF02366.18	gi|257053303|ref|YP_003131136.1|	-	0.00014	21.5	13.6	0.00014	21.5	13.6	1.9	2	1	0	2	2	2	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
DUF5400	PF17379.2	gi|257053303|ref|YP_003131136.1|	-	7.7	7.0	8.2	9.7	6.7	5.1	2.7	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5400)
LPG_synthase_TM	PF03706.13	gi|257053304|ref|YP_003131137.1|	-	3.5e-32	112.1	43.5	4.2e-32	111.9	43.5	1.0	1	0	0	1	1	1	1	Lysylphosphatidylglycerol	synthase	TM	region
Pam17	PF08566.10	gi|257053304|ref|YP_003131137.1|	-	0.11	12.3	0.1	0.11	12.3	0.1	1.6	2	0	0	2	2	2	0	Mitochondrial	import	protein	Pam17
Polysacc_deac_1	PF01522.21	gi|257053305|ref|YP_003131138.1|	-	1.9e-25	89.2	0.0	2.6e-25	88.7	0.0	1.2	1	0	0	1	1	1	1	Polysaccharide	deacetylase
DUF3473	PF11959.8	gi|257053305|ref|YP_003131138.1|	-	5.1e-23	81.5	0.0	6.9e-23	81.1	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3473)
Glyco_hydro_57	PF03065.15	gi|257053305|ref|YP_003131138.1|	-	0.015	14.5	0.0	0.021	14.0	0.0	1.1	1	0	0	1	1	1	0	Glycosyl	hydrolase	family	57
DUF2304	PF10066.9	gi|257053306|ref|YP_003131139.1|	-	1.2e-16	60.8	3.4	1.3e-16	60.7	3.4	1.0	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2304)
Glycos_transf_2	PF00535.26	gi|257053307|ref|YP_003131140.1|	-	1.2e-24	87.1	0.2	1.6e-24	86.6	0.2	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|257053307|ref|YP_003131140.1|	-	1.3e-09	38.3	0.4	3.6e-09	36.8	0.4	1.6	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.6	gi|257053307|ref|YP_003131140.1|	-	0.00024	21.5	0.0	0.0013	19.2	0.0	2.1	2	0	0	2	2	2	1	Glycosyl	transferase	family	2
NTP_transf_3	PF12804.7	gi|257053307|ref|YP_003131140.1|	-	0.018	15.4	0.2	0.025	15.0	0.2	1.5	1	1	0	1	1	1	0	MobA-like	NTP	transferase	domain
Phosphodiest	PF01663.22	gi|257053308|ref|YP_003131141.1|	-	8.6e-36	124.3	0.3	2e-35	123.1	0.3	1.5	1	1	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Nramp	PF01566.18	gi|257053309|ref|YP_003131142.1|	-	2.3e-63	214.3	33.4	2.3e-63	214.3	33.4	1.3	2	0	0	2	2	2	1	Natural	resistance-associated	macrophage	protein
AAA_16	PF13191.6	gi|257053310|ref|YP_003131143.1|	-	0.048	14.1	0.2	0.068	13.6	0.2	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
TruB_C	PF09142.11	gi|257053310|ref|YP_003131143.1|	-	0.063	13.1	1.4	1.9	8.3	0.3	2.5	2	0	0	2	2	2	0	tRNA	Pseudouridine	synthase	II,	C	terminal
PAC2	PF09754.9	gi|257053310|ref|YP_003131143.1|	-	0.097	12.7	0.0	0.11	12.4	0.0	1.2	1	0	0	1	1	1	0	PAC2	family
AAA_22	PF13401.6	gi|257053310|ref|YP_003131143.1|	-	0.11	12.8	0.0	0.19	12.0	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Cas_Cas02710	PF09670.10	gi|257053311|ref|YP_003131144.1|	-	4.3e-07	29.1	0.0	5.6e-07	28.7	0.0	1.1	1	0	0	1	1	1	1	CRISPR-associated	protein	(Cas_Cas02710)
HTH_27	PF13463.6	gi|257053311|ref|YP_003131144.1|	-	0.012	16.1	0.0	0.23	12.0	0.1	2.4	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
DUF1887	PF09002.11	gi|257053311|ref|YP_003131144.1|	-	0.015	14.0	0.0	0.019	13.7	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1887)
SHMT	PF00464.19	gi|257053312|ref|YP_003131145.1|	-	6.6e-137	456.4	0.1	8.1e-137	456.1	0.1	1.1	1	0	0	1	1	1	1	Serine	hydroxymethyltransferase
Aminotran_1_2	PF00155.21	gi|257053312|ref|YP_003131145.1|	-	2e-06	27.2	0.0	0.027	13.6	0.0	2.2	2	0	0	2	2	2	2	Aminotransferase	class	I	and	II
Beta_elim_lyase	PF01212.21	gi|257053312|ref|YP_003131145.1|	-	2.1e-05	24.0	0.9	0.0014	18.0	0.1	2.3	2	1	0	2	2	2	2	Beta-eliminating	lyase
DegT_DnrJ_EryC1	PF01041.17	gi|257053312|ref|YP_003131145.1|	-	0.078	12.3	1.3	0.16	11.3	1.3	1.5	1	1	0	1	1	1	0	DegT/DnrJ/EryC1/StrS	aminotransferase	family
TAT_signal	PF10518.9	gi|257053313|ref|YP_003131146.1|	-	5.8e-05	22.8	1.0	0.00011	21.9	1.0	1.5	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
tRNA_anti-codon	PF01336.25	gi|257053314|ref|YP_003131147.1|	-	7.2e-27	93.2	16.8	2.1e-12	46.8	1.3	4.0	4	1	0	4	4	4	3	OB-fold	nucleic	acid	binding	domain
REPA_OB_2	PF16900.5	gi|257053314|ref|YP_003131147.1|	-	4.1e-14	52.3	4.5	1.3e-06	28.2	0.3	3.4	3	0	0	3	3	3	3	Replication	protein	A	OB	domain
CDC24_OB3	PF17244.2	gi|257053314|ref|YP_003131147.1|	-	7.2e-06	25.9	0.2	0.021	14.5	0.0	3.1	3	0	0	3	3	3	2	Cell	division	control	protein	24,	OB	domain	3
Rep_fac-A_C	PF08646.10	gi|257053314|ref|YP_003131147.1|	-	0.032	14.0	0.1	6.7	6.5	0.0	3.5	4	0	0	4	4	4	0	Replication	factor-A	C	terminal	domain
CBFD_NFYB_HMF	PF00808.23	gi|257053315|ref|YP_003131148.1|	-	4.3e-23	81.4	0.2	1.6e-12	47.5	0.1	2.0	2	0	0	2	2	2	2	Histone-like	transcription	factor	(CBF/NF-Y)	and	archaeal	histone
Histone	PF00125.24	gi|257053315|ref|YP_003131148.1|	-	1.6e-11	44.7	0.6	1.1e-07	32.2	0.2	2.0	2	0	0	2	2	2	2	Core	histone	H2A/H2B/H3/H4
CENP-S	PF15630.6	gi|257053315|ref|YP_003131148.1|	-	0.00027	21.3	1.0	0.00062	20.1	0.3	1.8	2	0	0	2	2	2	1	CENP-S	protein
CENP-T_C	PF15511.6	gi|257053315|ref|YP_003131148.1|	-	0.00037	20.6	0.1	0.0098	16.0	0.1	2.1	2	0	0	2	2	2	1	Centromere	kinetochore	component	CENP-T	histone	fold
DUF1931	PF09123.11	gi|257053315|ref|YP_003131148.1|	-	0.009	16.1	0.7	1.7	8.8	0.0	2.1	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF1931)
Hist_deacetyl	PF00850.19	gi|257053316|ref|YP_003131149.1|	-	8e-79	265.3	0.0	1.1e-78	264.8	0.0	1.2	1	0	0	1	1	1	1	Histone	deacetylase	domain
tRNA_NucTransf2	PF09249.11	gi|257053317|ref|YP_003131150.1|	-	2e-44	150.5	0.0	3.6e-44	149.6	0.0	1.5	1	0	0	1	1	1	1	tRNA	nucleotidyltransferase,	second	domain
NTP_transf_2	PF01909.23	gi|257053317|ref|YP_003131150.1|	-	6.4e-15	55.2	0.0	1.5e-14	54.0	0.0	1.7	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
SMODS	PF18144.1	gi|257053317|ref|YP_003131150.1|	-	0.023	14.9	0.0	0.13	12.4	0.0	2.0	1	1	0	1	1	1	0	Second	Messenger	Oligonucleotide	or	Dinucleotide	Synthetase	domain
DUF2391	PF09622.10	gi|257053318|ref|YP_003131151.1|	-	4.1e-05	23.1	1.2	5.4e-05	22.7	1.2	1.1	1	0	0	1	1	1	1	Putative	integral	membrane	protein	(DUF2391)
Yip1	PF04893.17	gi|257053318|ref|YP_003131151.1|	-	0.012	15.3	2.4	0.015	15.0	2.0	1.3	1	1	0	1	1	1	0	Yip1	domain
ATPase	PF06745.13	gi|257053319|ref|YP_003131152.1|	-	0.0012	18.2	0.1	0.0016	17.9	0.1	1.1	1	0	0	1	1	1	1	KaiC
PAXNEB	PF05625.11	gi|257053319|ref|YP_003131152.1|	-	0.028	13.5	0.0	0.033	13.3	0.0	1.1	1	0	0	1	1	1	0	PAXNEB	protein
PGM_PMM_I	PF02878.16	gi|257053320|ref|YP_003131153.1|	-	1.9e-31	108.6	0.0	3.1e-31	107.9	0.0	1.4	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
PGM_PMM_III	PF02880.16	gi|257053320|ref|YP_003131153.1|	-	3.4e-19	69.1	0.0	7.2e-19	68.1	0.0	1.6	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	III
PGM_PMM_II	PF02879.16	gi|257053320|ref|YP_003131153.1|	-	3.3e-17	63.0	1.7	4.6e-17	62.5	0.1	2.1	2	0	0	2	2	2	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
PGM_PMM_IV	PF00408.20	gi|257053320|ref|YP_003131153.1|	-	5.5e-12	45.7	0.5	5.5e-12	45.7	0.5	2.7	3	0	0	3	3	3	1	Phosphoglucomutase/phosphomannomutase,	C-terminal	domain
DUF2270	PF10028.9	gi|257053321|ref|YP_003131154.1|	-	3.9e-72	241.7	0.1	4.7e-72	241.4	0.1	1.0	1	0	0	1	1	1	1	Predicted	integral	membrane	protein	(DUF2270)
DUF4131	PF13567.6	gi|257053321|ref|YP_003131154.1|	-	0.24	11.1	2.8	4.7	6.8	0.6	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4131)
DUF1931	PF09123.11	gi|257053322|ref|YP_003131155.1|	-	0.0011	19.0	1.1	0.0013	18.9	1.1	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1931)
CBFD_NFYB_HMF	PF00808.23	gi|257053322|ref|YP_003131155.1|	-	0.003	17.8	0.1	0.0037	17.5	0.1	1.4	1	1	0	1	1	1	1	Histone-like	transcription	factor	(CBF/NF-Y)	and	archaeal	histone
Histone	PF00125.24	gi|257053322|ref|YP_003131155.1|	-	0.015	15.6	0.1	0.015	15.6	0.1	1.1	1	0	0	1	1	1	0	Core	histone	H2A/H2B/H3/H4
CP12	PF02672.15	gi|257053322|ref|YP_003131155.1|	-	0.049	14.4	0.4	0.059	14.1	0.4	1.2	1	0	0	1	1	1	0	CP12	domain
AIRC	PF00731.20	gi|257053323|ref|YP_003131156.1|	-	2.7e-13	49.7	2.3	2.7e-13	49.7	2.3	2.0	2	0	0	2	2	2	1	AIR	carboxylase
Zot	PF05707.12	gi|257053323|ref|YP_003131156.1|	-	0.11	12.1	0.0	0.17	11.5	0.0	1.2	1	0	0	1	1	1	0	Zonular	occludens	toxin	(Zot)
GIY-YIG	PF01541.24	gi|257053324|ref|YP_003131157.1|	-	2.9e-18	65.9	0.0	3.2e-18	65.8	0.0	1.0	1	0	0	1	1	1	1	GIY-YIG	catalytic	domain
T5orf172	PF10544.9	gi|257053324|ref|YP_003131157.1|	-	0.061	13.9	0.0	0.071	13.6	0.0	1.2	1	0	0	1	1	1	0	T5orf172	domain
Methyltransf_11	PF08241.12	gi|257053325|ref|YP_003131158.1|	-	1.5e-23	83.2	0.0	3.8e-23	82.0	0.0	1.7	2	0	0	2	2	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|257053325|ref|YP_003131158.1|	-	7.5e-21	74.7	0.1	2.4e-20	73.0	0.0	1.8	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|257053325|ref|YP_003131158.1|	-	7.3e-18	64.8	0.0	9.3e-18	64.5	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|257053325|ref|YP_003131158.1|	-	3.2e-14	53.1	0.0	4.3e-14	52.7	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|257053325|ref|YP_003131158.1|	-	2.8e-11	43.2	0.0	6.1e-11	42.1	0.0	1.5	1	1	1	2	2	2	1	ubiE/COQ5	methyltransferase	family
Methyltransf_12	PF08242.12	gi|257053325|ref|YP_003131158.1|	-	8.1e-11	42.6	0.0	1.4e-10	41.8	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_9	PF08003.11	gi|257053325|ref|YP_003131158.1|	-	3.6e-08	32.7	0.0	4.8e-08	32.3	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
PCMT	PF01135.19	gi|257053325|ref|YP_003131158.1|	-	0.0002	21.2	0.0	0.00032	20.5	0.0	1.4	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_2	PF00891.18	gi|257053325|ref|YP_003131158.1|	-	0.00047	19.5	0.0	0.00063	19.1	0.0	1.2	1	0	0	1	1	1	1	O-methyltransferase	domain
N6_N4_Mtase	PF01555.18	gi|257053325|ref|YP_003131158.1|	-	0.00093	19.0	0.0	0.48	10.1	0.0	2.2	2	0	0	2	2	2	2	DNA	methylase
Methyltransf_32	PF13679.6	gi|257053325|ref|YP_003131158.1|	-	0.0054	16.7	0.0	0.0086	16.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
CMAS	PF02353.20	gi|257053325|ref|YP_003131158.1|	-	0.0056	16.0	0.0	0.0073	15.6	0.0	1.3	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_8	PF05148.15	gi|257053325|ref|YP_003131158.1|	-	0.0071	16.2	0.0	0.084	12.7	0.0	2.1	1	1	0	1	1	1	1	Hypothetical	methyltransferase
GCD14	PF08704.10	gi|257053325|ref|YP_003131158.1|	-	0.012	15.3	0.0	0.017	14.8	0.0	1.2	1	0	0	1	1	1	0	tRNA	methyltransferase	complex	GCD14	subunit
PrmA	PF06325.13	gi|257053325|ref|YP_003131158.1|	-	0.025	14.0	0.1	0.041	13.3	0.1	1.3	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
MTS	PF05175.14	gi|257053325|ref|YP_003131158.1|	-	0.037	13.6	0.0	0.09	12.3	0.1	1.6	2	0	0	2	2	2	0	Methyltransferase	small	domain
Methyltransf_18	PF12847.7	gi|257053325|ref|YP_003131158.1|	-	0.16	11.9	0.0	0.44	10.5	0.0	1.7	2	0	0	2	2	2	0	Methyltransferase	domain
MetW	PF07021.12	gi|257053325|ref|YP_003131158.1|	-	0.17	11.5	0.0	0.24	11.0	0.0	1.3	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
NAD_binding_1	PF00175.21	gi|257053326|ref|YP_003131159.1|	-	3.4e-14	53.4	0.0	9e-14	52.0	0.0	1.7	1	1	0	1	1	1	1	Oxidoreductase	NAD-binding	domain
FAD_binding_6	PF00970.24	gi|257053326|ref|YP_003131159.1|	-	2.8e-09	37.2	0.0	5e-09	36.4	0.0	1.3	1	0	0	1	1	1	1	Oxidoreductase	FAD-binding	domain
GCHY-1	PF02649.14	gi|257053327|ref|YP_003131160.1|	-	2.3e-75	253.5	0.2	2.6e-75	253.3	0.2	1.0	1	0	0	1	1	1	1	Type	I	GTP	cyclohydrolase	folE2
Limkain-b1	PF11608.8	gi|257053327|ref|YP_003131160.1|	-	0.00054	20.0	0.0	0.0013	18.8	0.0	1.6	1	0	0	1	1	1	1	Limkain	b1
FxsA	PF04186.13	gi|257053328|ref|YP_003131161.1|	-	5.9e-34	116.5	10.1	8.1e-34	116.0	10.1	1.1	1	0	0	1	1	1	1	FxsA	cytoplasmic	membrane	protein
RseC_MucC	PF04246.12	gi|257053328|ref|YP_003131161.1|	-	2.1	8.3	3.5	3.6	7.5	3.5	1.4	1	0	0	1	1	1	0	Positive	regulator	of	sigma(E),	RseC/MucC
CARDB	PF07705.11	gi|257053330|ref|YP_003131163.1|	-	3.6e-06	27.2	71.6	0.15	12.3	4.7	7.8	5	1	1	7	7	7	5	CARDB
Capsid_N	PF16903.5	gi|257053330|ref|YP_003131163.1|	-	8.7e-05	22.2	16.5	8.5	5.9	0.0	6.0	6	0	0	6	6	6	5	Major	capsid	protein	N-terminus
Tli4_C	PF18426.1	gi|257053330|ref|YP_003131163.1|	-	0.00072	19.9	4.2	20	5.4	0.0	5.1	7	0	0	7	7	7	0	Tle	cognate	immunity	protein	4	C-terminal	domain
4HBT	PF03061.22	gi|257053330|ref|YP_003131163.1|	-	0.00094	19.5	4.1	2.2e+02	2.3	0.0	7.5	5	5	5	10	10	10	0	Thioesterase	superfamily
DUF756	PF05506.12	gi|257053330|ref|YP_003131163.1|	-	0.078	13.9	9.6	1.6e+02	3.3	0.0	6.5	7	0	0	7	7	7	0	Domain	of	unknown	function	(DUF756)
DUF4687	PF15747.5	gi|257053330|ref|YP_003131163.1|	-	0.11	13.0	21.4	36	4.9	0.2	6.1	5	0	0	5	5	5	0	Domain	of	unknown	function	(DUF4687)
Plug_translocon	PF10559.9	gi|257053330|ref|YP_003131163.1|	-	0.47	10.3	3.4	3.9e+02	1.0	0.0	4.8	5	0	0	5	5	5	0	Plug	domain	of	Sec61p
Alpha_adaptinC2	PF02883.20	gi|257053330|ref|YP_003131163.1|	-	1.5	9.2	15.7	61	4.0	0.4	5.9	1	1	3	5	5	5	0	Adaptin	C-terminal	domain
DUF916	PF06030.12	gi|257053330|ref|YP_003131163.1|	-	4.8	7.3	20.4	33	4.6	0.5	6.1	6	0	0	6	6	6	0	Bacterial	protein	of	unknown	function	(DUF916)
DUF2627	PF11118.8	gi|257053331|ref|YP_003131164.1|	-	0.093	13.3	0.1	0.098	13.2	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2627)
adh_short	PF00106.25	gi|257053332|ref|YP_003131165.1|	-	3.6e-44	150.6	0.1	4.5e-44	150.2	0.1	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.6	gi|257053332|ref|YP_003131165.1|	-	1.9e-43	148.7	0.0	2.2e-43	148.5	0.0	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.10	gi|257053332|ref|YP_003131165.1|	-	1.1e-05	25.5	1.3	5.2e-05	23.2	1.3	1.9	1	1	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|257053332|ref|YP_003131165.1|	-	0.00015	21.3	0.1	0.00023	20.7	0.1	1.3	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3HCDH_N	PF02737.18	gi|257053332|ref|YP_003131165.1|	-	0.038	13.9	0.3	0.053	13.4	0.3	1.2	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
HATPase_c	PF02518.26	gi|257053333|ref|YP_003131166.1|	-	2.6e-17	63.3	0.1	7.8e-17	61.8	0.1	1.8	1	1	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|257053333|ref|YP_003131166.1|	-	3.5e-12	46.2	0.1	1.2e-11	44.5	0.2	1.9	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_9	PF13426.7	gi|257053333|ref|YP_003131166.1|	-	8.9e-08	32.3	0.0	2.1e-07	31.1	0.0	1.7	1	0	0	1	1	1	1	PAS	domain
PAS_4	PF08448.10	gi|257053333|ref|YP_003131166.1|	-	5.6e-05	23.4	0.3	0.00025	21.3	0.0	2.1	2	0	0	2	2	2	1	PAS	fold
PAS	PF00989.25	gi|257053333|ref|YP_003131166.1|	-	0.00023	21.2	0.0	0.00049	20.1	0.0	1.7	1	1	0	1	1	1	1	PAS	fold
HATPase_c_2	PF13581.6	gi|257053333|ref|YP_003131166.1|	-	0.0026	17.7	0.1	0.0069	16.4	0.1	1.7	1	1	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HATPase_c_5	PF14501.6	gi|257053333|ref|YP_003131166.1|	-	0.015	15.2	0.0	5.8	6.9	0.0	2.4	2	0	0	2	2	2	0	GHKL	domain
PAS_8	PF13188.7	gi|257053333|ref|YP_003131166.1|	-	0.055	13.5	0.0	0.19	11.8	0.0	1.9	1	0	0	1	1	1	0	PAS	domain
TGF_beta_GS	PF08515.12	gi|257053333|ref|YP_003131166.1|	-	0.16	11.5	0.5	0.39	10.2	0.1	1.9	2	0	0	2	2	2	0	Transforming	growth	factor	beta	type	I	GS-motif
FAS_I_H	PF18314.1	gi|257053333|ref|YP_003131166.1|	-	0.17	11.5	0.0	0.3	10.7	0.0	1.4	1	0	0	1	1	1	0	Fatty	acid	synthase	type	I	helical	domain
HTH_10	PF04967.12	gi|257053335|ref|YP_003131168.1|	-	4e-16	58.5	0.1	6.4e-16	57.9	0.1	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|257053335|ref|YP_003131168.1|	-	1.4e-13	51.0	0.3	2.1e-13	50.4	0.3	1.2	1	0	0	1	1	1	1	GAF	and	HTH_10	associated	domain
MarR_2	PF12802.7	gi|257053335|ref|YP_003131168.1|	-	0.035	14.0	0.1	0.1	12.5	0.0	1.9	2	0	0	2	2	2	0	MarR	family
HTH_DeoR	PF08220.12	gi|257053335|ref|YP_003131168.1|	-	0.089	12.5	0.1	0.2	11.4	0.1	1.5	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
HTH_24	PF13412.6	gi|257053335|ref|YP_003131168.1|	-	0.097	12.2	0.0	0.18	11.4	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|257053335|ref|YP_003131168.1|	-	0.13	12.1	0.2	0.29	11.0	0.2	1.6	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
DUF1540	PF07561.11	gi|257053336|ref|YP_003131169.1|	-	0.0045	17.2	5.1	0.0058	16.9	5.1	1.2	1	0	0	1	1	1	1	Domain	of	Unknown	Function	(DUF1540)
DUF1998	PF09369.10	gi|257053338|ref|YP_003131171.1|	-	3.5e-22	78.9	0.2	1.1e-21	77.4	0.2	1.9	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1998)
DEAD	PF00270.29	gi|257053338|ref|YP_003131171.1|	-	1.1e-20	74.2	0.0	1.6e-20	73.6	0.0	1.2	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|257053338|ref|YP_003131171.1|	-	5e-08	33.3	0.0	1.2e-07	32.0	0.0	1.6	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
EccE	PF11203.8	gi|257053338|ref|YP_003131171.1|	-	0.025	14.9	2.8	2.4	8.5	1.3	3.0	2	0	0	2	2	2	0	Putative	type	VII	ESX	secretion	system	translocon,	EccE
ParE_toxin	PF05016.15	gi|257053339|ref|YP_003131172.1|	-	1.5e-05	25.5	0.0	1.9e-05	25.2	0.0	1.2	1	0	0	1	1	1	1	ParE	toxin	of	type	II	toxin-antitoxin	system,	parDE
Gp49	PF05973.14	gi|257053339|ref|YP_003131172.1|	-	0.14	12.3	0.0	0.2	11.8	0.0	1.3	1	1	0	1	1	1	0	Phage	derived	protein	Gp49-like	(DUF891)
RHH_1	PF01402.21	gi|257053340|ref|YP_003131173.1|	-	0.00036	20.4	0.0	0.00058	19.7	0.0	1.4	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
RHH_8	PF17723.1	gi|257053340|ref|YP_003131173.1|	-	0.01	16.0	0.0	0.012	15.8	0.0	1.2	1	1	0	1	1	1	0	Ribbon-Helix-Helix	transcriptional	regulator	family
HicB_lk_antitox	PF15919.5	gi|257053340|ref|YP_003131173.1|	-	0.054	13.6	0.0	0.077	13.1	0.0	1.2	1	0	0	1	1	1	0	HicB_like	antitoxin	of	bacterial	toxin-antitoxin	system
GFO_IDH_MocA	PF01408.22	gi|257053341|ref|YP_003131174.1|	-	1.3e-23	84.1	0.0	2.9e-23	83.0	0.0	1.6	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
GFO_IDH_MocA_C	PF02894.17	gi|257053341|ref|YP_003131174.1|	-	1.6e-08	34.6	0.0	3e-08	33.7	0.0	1.5	1	0	0	1	1	1	1	Oxidoreductase	family,	C-terminal	alpha/beta	domain
MMR_HSR1_C	PF08438.10	gi|257053342|ref|YP_003131175.1|	-	7.7e-30	103.7	0.0	1.2e-29	103.1	0.0	1.3	1	0	0	1	1	1	1	GTPase	of	unknown	function	C-terminal
MMR_HSR1	PF01926.23	gi|257053342|ref|YP_003131175.1|	-	8e-20	71.0	0.0	5.3e-19	68.4	0.0	2.2	3	0	0	3	3	3	1	50S	ribosome-binding	GTPase
TGS	PF02824.21	gi|257053342|ref|YP_003131175.1|	-	4.3e-11	42.7	0.0	9e-11	41.7	0.0	1.5	1	0	0	1	1	1	1	TGS	domain
FeoB_N	PF02421.18	gi|257053342|ref|YP_003131175.1|	-	6.4e-08	32.3	0.0	3.8e-07	29.8	0.0	2.2	3	0	0	3	3	3	1	Ferrous	iron	transport	protein	B
MMR_HSR1_Xtn	PF16897.5	gi|257053342|ref|YP_003131175.1|	-	0.12	12.3	0.0	0.29	11.2	0.0	1.6	1	0	0	1	1	1	0	C-terminal	region	of	MMR_HSR1	domain
Pribosyltran	PF00156.27	gi|257053343|ref|YP_003131176.1|	-	2.6e-15	56.3	0.0	3.8e-15	55.7	0.0	1.2	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
HTH_23	PF13384.6	gi|257053343|ref|YP_003131176.1|	-	0.0027	17.4	0.0	0.0056	16.4	0.0	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_Crp_2	PF13545.6	gi|257053343|ref|YP_003131176.1|	-	0.019	14.9	0.0	0.047	13.7	0.0	1.7	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_7	PF02796.15	gi|257053343|ref|YP_003131176.1|	-	0.02	14.9	0.0	0.038	14.1	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	resolvase
PRTase_2	PF15609.6	gi|257053343|ref|YP_003131176.1|	-	0.03	13.8	0.2	0.07	12.6	0.2	1.6	1	1	1	2	2	2	0	Phosphoribosyl	transferase
Sigma70_r4	PF04545.16	gi|257053343|ref|YP_003131176.1|	-	0.074	12.6	0.0	0.15	11.6	0.0	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_11	PF08279.12	gi|257053343|ref|YP_003131176.1|	-	0.11	12.5	0.0	0.24	11.4	0.0	1.6	1	0	0	1	1	1	0	HTH	domain
HTH_38	PF13936.6	gi|257053343|ref|YP_003131176.1|	-	0.12	12.2	0.1	4.7	7.0	0.0	2.6	2	0	0	2	2	2	0	Helix-turn-helix	domain
CENP-Q	PF13094.6	gi|257053344|ref|YP_003131177.1|	-	0.0031	17.7	4.9	0.0047	17.1	4.9	1.2	1	0	0	1	1	1	1	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
PilJ	PF13675.6	gi|257053344|ref|YP_003131177.1|	-	0.015	15.3	8.0	0.12	12.5	1.2	2.9	2	1	1	3	3	3	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
Syntaxin_2	PF14523.6	gi|257053344|ref|YP_003131177.1|	-	0.032	14.6	2.9	0.078	13.4	1.7	2.2	2	1	0	2	2	2	0	Syntaxin-like	protein
NPV_P10	PF05531.12	gi|257053344|ref|YP_003131177.1|	-	0.12	12.9	5.5	0.29	11.6	3.3	2.5	2	0	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
HSCB_C	PF07743.13	gi|257053344|ref|YP_003131177.1|	-	0.18	12.3	4.4	0.55	10.8	1.8	2.4	2	0	0	2	2	2	0	HSCB	C-terminal	oligomerisation	domain
SKA2	PF16740.5	gi|257053344|ref|YP_003131177.1|	-	0.23	11.3	3.4	0.41	10.4	0.4	2.5	1	1	1	2	2	2	0	Spindle	and	kinetochore-associated	protein	2
Baculo_PEP_C	PF04513.12	gi|257053344|ref|YP_003131177.1|	-	0.44	10.6	5.8	2.1	8.4	1.9	2.4	2	1	0	2	2	2	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
HWE_HK	PF07536.14	gi|257053344|ref|YP_003131177.1|	-	1.4	9.7	5.3	1.6	9.5	0.5	2.7	2	1	1	3	3	3	0	HWE	histidine	kinase
FUSC	PF04632.12	gi|257053344|ref|YP_003131177.1|	-	2.6	6.5	8.8	3.8	5.9	8.8	1.3	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
ATP-grasp_5	PF13549.6	gi|257053345|ref|YP_003131178.1|	-	4.1e-75	252.0	0.8	7.8e-75	251.1	0.5	1.6	2	0	0	2	2	2	1	ATP-grasp	domain
Succ_CoA_lig	PF13607.6	gi|257053345|ref|YP_003131178.1|	-	6e-55	184.8	0.1	1.5e-54	183.6	0.1	1.7	1	0	0	1	1	1	1	Succinyl-CoA	ligase	like	flavodoxin	domain
CoA_binding_2	PF13380.6	gi|257053345|ref|YP_003131178.1|	-	5e-22	78.6	2.9	8.5e-22	77.8	0.2	2.8	4	0	0	4	4	4	1	CoA	binding	domain
CoA_binding	PF02629.19	gi|257053345|ref|YP_003131178.1|	-	3.8e-08	33.9	0.9	3.8e-08	33.9	0.9	2.8	3	1	0	3	3	3	1	CoA	binding	domain
ATP-grasp_2	PF08442.10	gi|257053345|ref|YP_003131178.1|	-	0.0018	17.9	0.2	0.007	15.9	0.1	2.2	2	1	0	2	2	2	1	ATP-grasp	domain
PAC2	PF09754.9	gi|257053345|ref|YP_003131178.1|	-	0.044	13.8	0.0	2.2	8.2	0.0	2.4	2	0	0	2	2	2	0	PAC2	family
Milton	PF12448.8	gi|257053345|ref|YP_003131178.1|	-	0.18	11.9	0.0	0.33	11.0	0.0	1.3	1	0	0	1	1	1	0	Kinesin	associated	protein
AAA_26	PF13500.6	gi|257053346|ref|YP_003131179.1|	-	2.8e-36	125.2	0.1	5.1e-36	124.4	0.1	1.5	1	1	0	1	1	1	1	AAA	domain
DRTGG	PF07085.12	gi|257053346|ref|YP_003131179.1|	-	3.2e-25	88.0	0.5	1.4e-24	85.9	0.1	2.2	3	0	0	3	3	3	1	DRTGG	domain
CbiA	PF01656.23	gi|257053346|ref|YP_003131179.1|	-	4.4e-07	30.0	0.0	7.2e-07	29.3	0.0	1.4	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
Hpr_kinase_N	PF02603.16	gi|257053346|ref|YP_003131179.1|	-	0.035	14.1	0.0	0.093	12.8	0.0	1.7	2	0	0	2	2	2	0	HPr	Serine	kinase	N	terminus
PucR	PF07905.11	gi|257053346|ref|YP_003131179.1|	-	0.11	12.8	0.2	0.77	10.1	0.0	2.3	2	1	0	2	2	2	0	Purine	catabolism	regulatory	protein-like	family
CoA_binding_2	PF13380.6	gi|257053346|ref|YP_003131179.1|	-	0.11	13.0	0.0	1.5	9.4	0.0	2.6	2	1	1	3	3	3	0	CoA	binding	domain
DHDPS	PF00701.22	gi|257053347|ref|YP_003131180.1|	-	7.3e-66	221.8	0.0	8.1e-66	221.7	0.0	1.0	1	0	0	1	1	1	1	Dihydrodipicolinate	synthetase	family
DUF4380	PF14315.6	gi|257053348|ref|YP_003131181.1|	-	8.7e-05	21.6	0.0	0.00039	19.5	0.0	1.9	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4380)
Imm70	PF15601.6	gi|257053349|ref|YP_003131182.1|	-	0.012	15.2	0.0	0.015	14.8	0.0	1.2	1	0	0	1	1	1	0	Immunity	protein	70
PfkB	PF00294.24	gi|257053350|ref|YP_003131183.1|	-	5.8e-47	160.5	1.1	7.1e-47	160.2	1.1	1.0	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Trypsin_2	PF13365.6	gi|257053351|ref|YP_003131184.1|	-	2.3e-30	106.4	5.2	4.3e-30	105.6	5.2	1.4	1	0	0	1	1	1	1	Trypsin-like	peptidase	domain
PDZ_2	PF13180.6	gi|257053351|ref|YP_003131184.1|	-	5.5e-14	52.3	0.1	9.8e-14	51.4	0.1	1.4	1	0	0	1	1	1	1	PDZ	domain
Trypsin	PF00089.26	gi|257053351|ref|YP_003131184.1|	-	7.2e-10	39.0	2.3	6e-09	36.0	2.3	2.0	1	1	0	1	1	1	1	Trypsin
PDZ_6	PF17820.1	gi|257053351|ref|YP_003131184.1|	-	0.0063	16.3	0.1	0.041	13.7	0.0	2.3	2	0	0	2	2	2	1	PDZ	domain
Tricorn_PDZ	PF14685.6	gi|257053351|ref|YP_003131184.1|	-	0.034	14.1	0.0	0.079	12.9	0.0	1.6	1	0	0	1	1	1	0	Tricorn	protease	PDZ	domain
PDZ	PF00595.24	gi|257053351|ref|YP_003131184.1|	-	0.11	12.8	0.0	8.8	6.8	0.0	2.6	2	0	0	2	2	2	0	PDZ	domain
Peptidase_S32	PF05579.13	gi|257053351|ref|YP_003131184.1|	-	0.56	9.3	4.5	7.9	5.6	0.8	2.2	2	0	0	2	2	2	0	Equine	arteritis	virus	serine	endopeptidase	S32
MR_MLE_C	PF13378.6	gi|257053352|ref|YP_003131185.1|	-	5.3e-60	202.7	1.5	8.2e-60	202.1	1.5	1.3	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|257053352|ref|YP_003131185.1|	-	7.8e-14	51.9	0.0	1.6e-13	50.9	0.0	1.5	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
VirD1	PF07328.11	gi|257053353|ref|YP_003131186.1|	-	0.023	14.7	0.1	0.031	14.2	0.1	1.1	1	0	0	1	1	1	0	T-DNA	border	endonuclease	VirD1
RHH_1	PF01402.21	gi|257053353|ref|YP_003131186.1|	-	0.039	13.9	0.9	0.05	13.6	0.9	1.2	1	0	0	1	1	1	0	Ribbon-helix-helix	protein,	copG	family
DUF5371	PF17341.2	gi|257053353|ref|YP_003131186.1|	-	0.073	13.3	0.0	0.098	12.9	0.0	1.2	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5371)
FKBP_C	PF00254.28	gi|257053354|ref|YP_003131187.1|	-	1e-21	77.0	0.0	1.7e-21	76.3	0.0	1.4	1	1	0	1	1	1	1	FKBP-type	peptidyl-prolyl	cis-trans	isomerase
Peptidase_S13	PF02113.15	gi|257053354|ref|YP_003131187.1|	-	0.06	12.1	0.0	0.071	11.8	0.0	1.0	1	0	0	1	1	1	0	D-Ala-D-Ala	carboxypeptidase	3	(S13)	family
DUF4968	PF16338.5	gi|257053354|ref|YP_003131187.1|	-	0.1	12.9	0.0	0.19	12.1	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4968)
PPC	PF04151.15	gi|257053357|ref|YP_003131190.1|	-	0.05	14.7	0.4	0.09	13.9	0.4	1.4	1	0	0	1	1	1	0	Bacterial	pre-peptidase	C-terminal	domain
Methyltrn_RNA_3	PF02598.17	gi|257053358|ref|YP_003131191.1|	-	4.8e-68	229.7	0.0	5.5e-68	229.6	0.0	1.0	1	0	0	1	1	1	1	Putative	RNA	methyltransferase
eIF-1a	PF01176.19	gi|257053358|ref|YP_003131191.1|	-	0.017	15.0	0.6	0.037	13.9	0.6	1.5	1	0	0	1	1	1	0	Translation	initiation	factor	1A	/	IF-1
GCV_T_C	PF08669.11	gi|257053358|ref|YP_003131191.1|	-	0.026	14.5	0.1	0.53	10.2	0.0	2.6	3	0	0	3	3	3	0	Glycine	cleavage	T-protein	C-terminal	barrel	domain
Ribosomal_L3	PF00297.22	gi|257053359|ref|YP_003131192.1|	-	1.4e-107	359.9	0.0	3.2e-107	358.7	0.0	1.5	1	1	0	1	1	1	1	Ribosomal	protein	L3
Ribosomal_L4	PF00573.22	gi|257053360|ref|YP_003131193.1|	-	1.3e-42	145.7	0.1	1.4e-42	145.5	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L4/L1	family
Ribosomal_L23	PF00276.20	gi|257053361|ref|YP_003131194.1|	-	3e-15	56.3	2.3	9.8e-15	54.7	2.3	1.7	1	1	0	1	1	1	1	Ribosomal	protein	L23
DUF2551	PF10826.8	gi|257053361|ref|YP_003131194.1|	-	0.12	12.6	0.1	0.21	11.8	0.1	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2551)
Flagellin_IN	PF07196.13	gi|257053361|ref|YP_003131194.1|	-	0.13	12.5	2.2	0.29	11.3	0.2	2.2	1	1	0	2	2	2	0	Flagellin	hook	IN	motif
Ribosomal_L2_C	PF03947.18	gi|257053362|ref|YP_003131195.1|	-	2e-46	157.3	1.3	2.9e-46	156.8	1.3	1.2	1	0	0	1	1	1	1	Ribosomal	Proteins	L2,	C-terminal	domain
Ribosomal_L2	PF00181.23	gi|257053362|ref|YP_003131195.1|	-	4.3e-18	65.0	0.0	1.7e-17	63.2	0.0	2.0	2	0	0	2	2	2	1	Ribosomal	Proteins	L2,	RNA	binding	domain
Ribosomal_S19	PF00203.21	gi|257053363|ref|YP_003131196.1|	-	2.7e-31	107.3	0.0	4.1e-31	106.7	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	protein	S19
Citrate_synt	PF00285.21	gi|257053363|ref|YP_003131196.1|	-	0.029	13.5	0.0	0.03	13.4	0.0	1.1	1	0	0	1	1	1	0	Citrate	synthase,	C-terminal	domain
Ribosomal_L22	PF00237.19	gi|257053364|ref|YP_003131197.1|	-	5.6e-23	81.1	0.0	7e-23	80.8	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L22p/L17e
Ribosomal_S3_C	PF00189.20	gi|257053365|ref|YP_003131198.1|	-	3.8e-21	75.4	0.5	6.6e-21	74.6	0.5	1.4	1	0	0	1	1	1	1	Ribosomal	protein	S3,	C-terminal	domain
KH_2	PF07650.17	gi|257053365|ref|YP_003131198.1|	-	9.3e-17	60.6	0.1	2.6e-16	59.2	0.1	1.8	1	0	0	1	1	1	1	KH	domain
KH_1	PF00013.29	gi|257053365|ref|YP_003131198.1|	-	0.004	16.9	2.9	0.013	15.3	0.5	2.8	3	0	0	3	3	3	1	KH	domain
KH_4	PF13083.6	gi|257053365|ref|YP_003131198.1|	-	0.27	11.1	2.3	0.57	10.1	0.1	2.6	2	0	0	2	2	2	0	KH	domain
Ribosomal_L29	PF00831.23	gi|257053366|ref|YP_003131199.1|	-	2.2e-19	69.2	0.8	2.5e-19	69.0	0.8	1.1	1	0	0	1	1	1	1	Ribosomal	L29	protein
UPF0086	PF01868.16	gi|257053367|ref|YP_003131200.1|	-	1.4e-22	79.4	0.0	1.6e-22	79.2	0.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	UPF0086
BslA	PF17735.1	gi|257053367|ref|YP_003131200.1|	-	0.12	12.4	0.1	0.37	10.8	0.0	1.6	1	1	1	2	2	2	0	Biofilm	surface	layer	A
Ribosomal_S17	PF00366.20	gi|257053368|ref|YP_003131201.1|	-	3.9e-26	91.0	0.5	5e-26	90.6	0.5	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S17
Ribosomal_S17_N	PF16205.5	gi|257053368|ref|YP_003131201.1|	-	0.044	14.2	0.0	0.087	13.2	0.0	1.5	1	0	0	1	1	1	0	Ribosomal_S17	N-terminal
DUF1967	PF09269.11	gi|257053368|ref|YP_003131201.1|	-	0.16	11.9	0.2	14	5.7	0.0	2.7	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF1967)
Ribosomal_L14	PF00238.19	gi|257053369|ref|YP_003131202.1|	-	1.1e-36	125.6	0.1	1.3e-36	125.4	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L14p/L23e
Ribosomal_L26	PF16906.5	gi|257053370|ref|YP_003131203.1|	-	8.2e-19	67.9	0.0	9.5e-19	67.7	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	proteins	L26	eukaryotic,	L24P	archaeal
KOW	PF00467.29	gi|257053370|ref|YP_003131203.1|	-	1.8e-07	30.9	0.9	3e-07	30.2	0.1	1.8	2	0	0	2	2	2	1	KOW	motif
DUF4162	PF13732.6	gi|257053370|ref|YP_003131203.1|	-	0.041	14.6	0.1	0.063	14.0	0.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4162)
Ribosomal_S4e	PF00900.20	gi|257053371|ref|YP_003131204.1|	-	2.4e-20	72.2	0.0	4.2e-20	71.4	0.0	1.4	1	0	0	1	1	1	1	Ribosomal	family	S4e
RS4NT	PF08071.12	gi|257053371|ref|YP_003131204.1|	-	1.7e-10	40.9	0.0	2.8e-10	40.1	0.0	1.3	1	0	0	1	1	1	1	RS4NT	(NUC023)	domain
KOW	PF00467.29	gi|257053371|ref|YP_003131204.1|	-	0.0031	17.4	0.2	0.011	15.7	0.2	2.1	1	1	0	1	1	1	1	KOW	motif
Peptidase_S24	PF00717.23	gi|257053371|ref|YP_003131204.1|	-	0.0035	17.2	0.0	0.011	15.7	0.0	1.9	2	0	0	2	2	2	1	Peptidase	S24-like
S4	PF01479.25	gi|257053371|ref|YP_003131204.1|	-	0.0077	15.9	0.0	0.013	15.2	0.0	1.4	1	0	0	1	1	1	1	S4	domain
Autophagy_N	PF03986.13	gi|257053371|ref|YP_003131204.1|	-	8.5	6.3	0.0	8.5	6.3	0.0	2.6	2	1	1	3	3	3	0	Autophagocytosis	associated	protein	(Atg3),	N-terminal	domain
Ribosomal_L5_C	PF00673.21	gi|257053372|ref|YP_003131205.1|	-	1e-19	70.5	0.0	1.8e-19	69.7	0.0	1.5	1	0	0	1	1	1	1	ribosomal	L5P	family	C-terminus
Ribosomal_L5	PF00281.19	gi|257053372|ref|YP_003131205.1|	-	7.4e-18	64.6	0.0	1.2e-17	64.0	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L5
Ribosomal_S14	PF00253.21	gi|257053373|ref|YP_003131206.1|	-	1.2e-09	37.8	2.5	1.4e-09	37.6	2.5	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S14p/S29e
DUF4428	PF14471.6	gi|257053373|ref|YP_003131206.1|	-	0.0025	17.7	0.1	0.0032	17.4	0.1	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4428)
Ribosomal_S8	PF00410.19	gi|257053374|ref|YP_003131207.1|	-	1.3e-21	76.9	0.0	1.7e-21	76.5	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S8
Ribosomal_L6	PF00347.23	gi|257053375|ref|YP_003131208.1|	-	1.2e-24	86.8	0.0	3.7e-13	49.9	0.0	2.1	2	0	0	2	2	2	2	Ribosomal	protein	L6
Ribosomal_L32e	PF01655.18	gi|257053376|ref|YP_003131209.1|	-	1.5e-34	118.6	0.4	4.5e-34	117.1	0.3	1.8	2	0	0	2	2	2	1	Ribosomal	protein	L32
HHH_5	PF14520.6	gi|257053376|ref|YP_003131209.1|	-	1.6e-31	108.7	2.3	8.7e-15	55.1	0.3	3.4	3	1	0	3	3	3	2	Helix-hairpin-helix	domain
DNA_pol_lambd_f	PF10391.9	gi|257053376|ref|YP_003131209.1|	-	2.2e-15	56.2	0.0	3.9e-06	26.6	0.0	3.2	2	1	1	3	3	3	2	Fingers	domain	of	DNA	polymerase	lambda
HHH_2	PF12826.7	gi|257053376|ref|YP_003131209.1|	-	3.5e-13	49.4	9.7	1.5e-06	28.2	0.4	3.6	3	2	2	5	5	5	3	Helix-hairpin-helix	motif
HHH	PF00633.23	gi|257053376|ref|YP_003131209.1|	-	4.3e-13	48.4	8.3	0.0068	16.2	0.1	5.2	5	0	0	5	5	5	4	Helix-hairpin-helix	motif
Cdd1	PF11731.8	gi|257053376|ref|YP_003131209.1|	-	4.7e-10	39.6	0.0	0.0045	17.2	0.0	3.9	3	2	2	5	5	5	2	Pathogenicity	locus
HHH_8	PF14716.6	gi|257053376|ref|YP_003131209.1|	-	8e-10	38.9	3.3	0.3	11.5	0.0	4.7	3	1	1	4	4	4	3	Helix-hairpin-helix	domain
HHH_3	PF12836.7	gi|257053376|ref|YP_003131209.1|	-	3.6e-09	36.8	0.5	0.18	12.0	0.1	5.3	5	1	1	6	6	5	2	Helix-hairpin-helix	motif
BAF	PF02961.14	gi|257053376|ref|YP_003131209.1|	-	2e-06	28.2	1.1	1.3	9.5	0.0	4.2	2	2	2	4	4	4	2	Barrier	to	autointegration	factor
IMS_HHH	PF11798.8	gi|257053376|ref|YP_003131209.1|	-	3.9e-06	26.9	0.0	9.1	6.8	0.0	4.4	4	0	0	4	4	4	1	IMS	family	HHH	motif
LytR_C	PF13399.6	gi|257053376|ref|YP_003131209.1|	-	8.7e-06	26.6	8.8	0.035	15.1	0.3	3.5	3	1	1	4	4	4	2	LytR	cell	envelope-related	transcriptional	attenuator
DUF4332	PF14229.6	gi|257053376|ref|YP_003131209.1|	-	0.00011	22.4	0.0	0.33	11.2	0.0	2.7	3	0	0	3	3	2	2	Domain	of	unknown	function	(DUF4332)
RNA_pol_A_CTD	PF03118.15	gi|257053376|ref|YP_003131209.1|	-	0.00017	21.3	0.0	0.47	10.3	0.0	2.5	2	0	0	2	2	2	2	Bacterial	RNA	polymerase,	alpha	chain	C	terminal	domain
Transposase_20	PF02371.16	gi|257053376|ref|YP_003131209.1|	-	0.00033	20.9	0.3	0.74	10.2	0.0	3.5	4	0	0	4	4	4	1	Transposase	IS116/IS110/IS902	family
DUF3701	PF12482.8	gi|257053376|ref|YP_003131209.1|	-	0.0013	18.7	0.2	1.7	8.8	0.0	2.7	2	0	0	2	2	2	2	Phage	integrase	protein
adh_short	PF00106.25	gi|257053376|ref|YP_003131209.1|	-	0.1	12.0	5.8	0.72	9.3	0.4	2.3	2	0	0	2	2	2	0	short	chain	dehydrogenase
POTRA_TamA_1	PF17243.2	gi|257053376|ref|YP_003131209.1|	-	0.54	10.4	5.5	2.4	8.3	1.1	3.0	2	0	0	2	2	2	0	POTRA	domain	TamA	domain	1
Ribosomal_L19e	PF01280.20	gi|257053377|ref|YP_003131210.1|	-	5.8e-52	175.6	2.5	6.4e-52	175.4	2.5	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L19e
Dabb	PF07876.12	gi|257053377|ref|YP_003131210.1|	-	0.1	13.2	0.0	0.21	12.3	0.0	1.5	1	0	0	1	1	1	0	Stress	responsive	A/B	Barrel	Domain
Ribosomal_L5e	PF17144.4	gi|257053378|ref|YP_003131211.1|	-	1.5e-29	103.1	0.0	3.3e-19	69.5	0.0	2.2	1	1	1	2	2	2	2	Ribosomal	large	subunit	proteins	60S	L5,	and	50S	L18
Ribosomal_L18p	PF00861.22	gi|257053378|ref|YP_003131211.1|	-	0.0011	19.3	0.0	0.0016	18.8	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	L18	of	archaea,	bacteria,	mitoch.	and	chloroplast
DUF4164	PF13747.6	gi|257053378|ref|YP_003131211.1|	-	0.078	13.3	0.1	0.19	12.0	0.1	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4164)
Ribosomal_S5_C	PF03719.15	gi|257053379|ref|YP_003131212.1|	-	4.7e-24	83.6	0.0	7.4e-24	83.0	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	protein	S5,	C-terminal	domain
Ribosomal_S5	PF00333.20	gi|257053379|ref|YP_003131212.1|	-	1.4e-23	82.6	0.3	2.7e-23	81.7	0.3	1.5	1	0	0	1	1	1	1	Ribosomal	protein	S5,	N-terminal	domain
Ribosomal_L30	PF00327.20	gi|257053380|ref|YP_003131213.1|	-	1.6e-08	34.3	0.0	2.5e-08	33.7	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L30p/L7e
Ribosomal_L27A	PF00828.19	gi|257053381|ref|YP_003131214.1|	-	8.7e-19	68.5	0.6	1.3e-18	67.9	0.6	1.2	1	0	0	1	1	1	1	Ribosomal	proteins	50S-L15,	50S-L18e,	60S-L27A
SecY	PF00344.20	gi|257053382|ref|YP_003131215.1|	-	7.8e-70	235.5	20.4	7.8e-70	235.5	20.4	1.3	2	0	0	2	2	2	1	SecY	translocase
Plug_translocon	PF10559.9	gi|257053382|ref|YP_003131215.1|	-	6.4e-07	29.1	1.8	2e-06	27.5	1.8	1.9	1	0	0	1	1	1	1	Plug	domain	of	Sec61p
Ferrochelatase	PF00762.19	gi|257053383|ref|YP_003131216.1|	-	6.4e-69	232.5	0.0	7.6e-69	232.2	0.0	1.0	1	0	0	1	1	1	1	Ferrochelatase
CbiX	PF01903.17	gi|257053383|ref|YP_003131216.1|	-	3.6e-05	24.0	0.0	0.0014	19.0	0.0	2.5	2	0	0	2	2	2	1	CbiX
URO-D	PF01208.17	gi|257053384|ref|YP_003131217.1|	-	2.3e-109	365.7	0.0	2.5e-109	365.6	0.0	1.0	1	0	0	1	1	1	1	Uroporphyrinogen	decarboxylase	(URO-D)
HATPase_c	PF02518.26	gi|257053385|ref|YP_003131218.1|	-	4.5e-14	52.9	0.0	1.2e-13	51.5	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|257053385|ref|YP_003131218.1|	-	6.9e-12	45.2	0.0	2e-11	43.7	0.0	1.8	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_4	PF08448.10	gi|257053385|ref|YP_003131218.1|	-	4.1e-10	39.9	0.3	1.3e-09	38.3	0.0	2.0	2	0	0	2	2	2	1	PAS	fold
DUF1349	PF07081.11	gi|257053385|ref|YP_003131218.1|	-	3.1e-08	33.6	0.1	6.1e-07	29.3	0.0	2.8	2	1	0	2	2	2	1	Protein	of	unknown	function	(DUF1349)
GH43_C2	PF17851.1	gi|257053385|ref|YP_003131218.1|	-	0.028	14.1	0.0	0.064	13.0	0.0	1.5	1	0	0	1	1	1	0	Beta	xylosidase	C-terminal	Concanavalin	A-like	domain
OKR_DC_1_N	PF03709.15	gi|257053385|ref|YP_003131218.1|	-	0.087	13.1	0.3	0.25	11.6	0.3	1.7	1	0	0	1	1	1	0	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
HATPase_c_3	PF13589.6	gi|257053385|ref|YP_003131218.1|	-	0.098	12.5	0.0	0.29	11.0	0.0	1.8	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
ADK	PF00406.22	gi|257053386|ref|YP_003131219.1|	-	2.9e-43	147.6	0.0	3.5e-43	147.3	0.0	1.1	1	0	0	1	1	1	1	Adenylate	kinase
AAA_17	PF13207.6	gi|257053386|ref|YP_003131219.1|	-	1.5e-20	74.0	0.0	2.6e-20	73.2	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
ADK_lid	PF05191.14	gi|257053386|ref|YP_003131219.1|	-	3.5e-16	58.9	2.4	5.7e-16	58.2	2.4	1.4	1	0	0	1	1	1	1	Adenylate	kinase,	active	site	lid
AAA_18	PF13238.6	gi|257053386|ref|YP_003131219.1|	-	8e-07	29.7	0.0	1.5e-06	28.8	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|257053386|ref|YP_003131219.1|	-	0.00039	20.6	0.0	0.00084	19.5	0.0	1.6	2	0	0	2	2	2	1	AAA	domain
TF_Zn_Ribbon	PF08271.12	gi|257053386|ref|YP_003131219.1|	-	0.00079	18.9	1.6	0.0019	17.7	1.6	1.7	1	0	0	1	1	1	1	TFIIB	zinc-binding
HypA	PF01155.19	gi|257053386|ref|YP_003131219.1|	-	0.038	14.0	0.1	0.055	13.5	0.1	1.3	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
RuvB_N	PF05496.12	gi|257053386|ref|YP_003131219.1|	-	0.079	12.7	0.0	0.14	11.8	0.0	1.4	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
zf-IS66	PF13005.7	gi|257053386|ref|YP_003131219.1|	-	0.088	13.2	0.8	1.9	9.0	0.1	2.4	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
Zn_ribbon_recom	PF13408.6	gi|257053386|ref|YP_003131219.1|	-	0.12	12.9	0.1	3.7	8.1	0.0	2.6	2	0	0	2	2	2	0	Recombinase	zinc	beta	ribbon	domain
zf-C4_Topoisom	PF01396.19	gi|257053386|ref|YP_003131219.1|	-	0.13	12.1	0.8	0.26	11.1	0.1	1.8	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
DZR	PF12773.7	gi|257053386|ref|YP_003131219.1|	-	0.13	12.3	0.8	0.32	11.0	0.8	1.5	1	1	0	1	1	1	0	Double	zinc	ribbon
AAA_24	PF13479.6	gi|257053386|ref|YP_003131219.1|	-	0.14	11.9	0.0	0.51	10.0	0.0	1.9	3	0	0	3	3	3	0	AAA	domain
PduV-EutP	PF10662.9	gi|257053386|ref|YP_003131219.1|	-	0.16	11.7	0.0	0.36	10.6	0.0	1.6	1	1	0	1	1	1	0	Ethanolamine	utilisation	-	propanediol	utilisation
Zn-ribbon_8	PF09723.10	gi|257053386|ref|YP_003131219.1|	-	0.17	12.0	1.6	0.33	11.1	1.6	1.4	1	0	0	1	1	1	0	Zinc	ribbon	domain
Ploopntkinase3	PF18751.1	gi|257053386|ref|YP_003131219.1|	-	0.19	11.6	0.0	1.7	8.5	0.0	2.1	2	0	0	2	2	2	0	P-loop	Nucleotide	Kinase3
Nudix_N_2	PF14803.6	gi|257053386|ref|YP_003131219.1|	-	0.63	10.0	3.2	19	5.3	0.5	2.3	2	0	0	2	2	2	0	Nudix	N-terminal
EMC3_TMCO1	PF01956.16	gi|257053387|ref|YP_003131220.1|	-	1e-45	155.5	1.0	1.3e-45	155.1	1.0	1.1	1	0	0	1	1	1	1	Integral	membrane	protein	EMC3/TMCO1-like
60KD_IMP	PF02096.20	gi|257053387|ref|YP_003131220.1|	-	7.2e-07	29.2	0.1	1.2e-06	28.5	0.1	1.3	1	0	0	1	1	1	1	60Kd	inner	membrane	protein
DUF4199	PF13858.6	gi|257053387|ref|YP_003131220.1|	-	0.01	16.3	0.3	0.058	13.8	0.1	2.2	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF4199)
Cytidylate_kin2	PF13189.6	gi|257053388|ref|YP_003131221.1|	-	7.7e-22	78.3	1.8	9.4e-20	71.5	1.8	2.0	1	1	0	1	1	1	1	Cytidylate	kinase-like	family
AAA_18	PF13238.6	gi|257053388|ref|YP_003131221.1|	-	4.1e-17	62.9	0.1	5.7e-17	62.5	0.1	1.2	1	0	0	1	1	1	1	AAA	domain
Cytidylate_kin	PF02224.18	gi|257053388|ref|YP_003131221.1|	-	1.2e-12	48.0	3.2	8.1e-07	29.0	0.1	2.1	1	1	0	2	2	2	2	Cytidylate	kinase
AAA_17	PF13207.6	gi|257053388|ref|YP_003131221.1|	-	5.7e-12	46.2	0.1	9.1e-12	45.6	0.1	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|257053388|ref|YP_003131221.1|	-	5e-10	39.7	0.3	2.1e-08	34.5	0.3	2.1	1	1	0	1	1	1	1	AAA	domain
SKI	PF01202.22	gi|257053388|ref|YP_003131221.1|	-	1.6e-06	28.4	2.0	1.3e-05	25.4	2.0	2.0	1	1	0	1	1	1	1	Shikimate	kinase
AAA_16	PF13191.6	gi|257053388|ref|YP_003131221.1|	-	6.2e-05	23.5	0.4	9.5e-05	22.8	0.4	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
ADK	PF00406.22	gi|257053388|ref|YP_003131221.1|	-	6.2e-05	23.1	0.1	0.00019	21.5	0.0	1.8	1	1	0	2	2	2	1	Adenylate	kinase
dNK	PF01712.19	gi|257053388|ref|YP_003131221.1|	-	0.00026	20.9	0.0	0.011	15.6	0.0	2.2	2	0	0	2	2	2	1	Deoxynucleoside	kinase
NACHT	PF05729.12	gi|257053388|ref|YP_003131221.1|	-	0.00044	20.2	0.0	0.00068	19.6	0.0	1.3	1	0	0	1	1	1	1	NACHT	domain
AAA_28	PF13521.6	gi|257053388|ref|YP_003131221.1|	-	0.00065	20.0	0.1	0.0035	17.6	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
AAA_30	PF13604.6	gi|257053388|ref|YP_003131221.1|	-	0.0036	17.1	0.6	0.19	11.4	0.1	2.3	1	1	1	2	2	2	1	AAA	domain
AAA_22	PF13401.6	gi|257053388|ref|YP_003131221.1|	-	0.0045	17.3	0.0	0.0073	16.6	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
RNA_helicase	PF00910.22	gi|257053388|ref|YP_003131221.1|	-	0.018	15.5	0.0	0.027	14.8	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
AAA_23	PF13476.6	gi|257053388|ref|YP_003131221.1|	-	0.02	15.4	0.0	0.028	14.9	0.0	1.4	1	1	0	1	1	1	0	AAA	domain
ABC_tran	PF00005.27	gi|257053388|ref|YP_003131221.1|	-	0.022	15.3	0.0	0.029	14.9	0.0	1.5	1	1	0	1	1	1	0	ABC	transporter
AAA	PF00004.29	gi|257053388|ref|YP_003131221.1|	-	0.027	14.9	0.0	0.041	14.3	0.0	1.4	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
CoaE	PF01121.20	gi|257053388|ref|YP_003131221.1|	-	0.03	14.0	0.1	0.47	10.1	0.0	2.1	2	0	0	2	2	2	0	Dephospho-CoA	kinase
AAA_25	PF13481.6	gi|257053388|ref|YP_003131221.1|	-	0.033	13.8	2.3	0.049	13.2	1.3	1.8	1	1	0	1	1	1	0	AAA	domain
T2SSE	PF00437.20	gi|257053388|ref|YP_003131221.1|	-	0.033	13.3	0.3	0.051	12.6	0.2	1.4	1	1	0	1	1	1	0	Type	II/IV	secretion	system	protein
CbiA	PF01656.23	gi|257053388|ref|YP_003131221.1|	-	0.037	14.1	0.1	0.072	13.2	0.1	1.4	1	0	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
NB-ARC	PF00931.22	gi|257053388|ref|YP_003131221.1|	-	0.048	12.9	0.0	0.076	12.2	0.0	1.4	1	0	0	1	1	1	0	NB-ARC	domain
Ploopntkinase3	PF18751.1	gi|257053388|ref|YP_003131221.1|	-	0.064	13.2	0.0	0.14	12.1	0.0	1.5	1	0	0	1	1	1	0	P-loop	Nucleotide	Kinase3
ATP_bind_1	PF03029.17	gi|257053388|ref|YP_003131221.1|	-	0.071	12.9	0.0	0.11	12.2	0.0	1.3	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
AAA_29	PF13555.6	gi|257053388|ref|YP_003131221.1|	-	0.078	12.7	0.1	0.14	11.9	0.1	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
PRK	PF00485.18	gi|257053388|ref|YP_003131221.1|	-	0.11	12.3	0.1	0.34	10.6	0.0	1.8	1	1	1	2	2	2	0	Phosphoribulokinase	/	Uridine	kinase	family
Thymidylate_kin	PF02223.17	gi|257053388|ref|YP_003131221.1|	-	0.11	12.2	1.0	13	5.4	0.2	2.3	2	1	1	3	3	3	0	Thymidylate	kinase
AAA_5	PF07728.14	gi|257053388|ref|YP_003131221.1|	-	0.11	12.5	0.0	0.25	11.3	0.0	1.5	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
DUF2075	PF09848.9	gi|257053388|ref|YP_003131221.1|	-	0.11	11.7	0.0	0.19	10.9	0.0	1.5	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
NTPase_1	PF03266.15	gi|257053388|ref|YP_003131221.1|	-	0.11	12.4	0.0	0.18	11.7	0.0	1.3	1	0	0	1	1	1	0	NTPase
APS_kinase	PF01583.20	gi|257053388|ref|YP_003131221.1|	-	0.15	12.0	0.0	0.41	10.5	0.0	1.9	2	0	0	2	2	2	0	Adenylylsulphate	kinase
TruB_N	PF01509.18	gi|257053389|ref|YP_003131222.1|	-	2e-24	86.6	0.1	2.1e-14	54.1	0.0	3.2	1	1	1	2	2	2	2	TruB	family	pseudouridylate	synthase	(N	terminal	domain)
TruB_C_2	PF16198.5	gi|257053389|ref|YP_003131222.1|	-	4e-23	81.3	0.1	1.1e-22	79.9	0.1	1.8	1	0	0	1	1	1	1	tRNA	pseudouridylate	synthase	B	C-terminal	domain
DKCLD	PF08068.12	gi|257053389|ref|YP_003131222.1|	-	6.3e-07	29.4	0.0	1.4e-06	28.3	0.0	1.6	1	0	0	1	1	1	1	DKCLD	(NUC011)	domain
PUA	PF01472.20	gi|257053389|ref|YP_003131222.1|	-	4e-06	26.7	0.1	7.9e-06	25.7	0.1	1.6	1	0	0	1	1	1	1	PUA	domain
zf-C3HC	PF07967.13	gi|257053391|ref|YP_003131224.1|	-	0.0013	18.7	0.3	0.0013	18.7	0.3	1.0	1	0	0	1	1	1	1	C3HC	zinc	finger-like
Zn-ribbon_8	PF09723.10	gi|257053391|ref|YP_003131224.1|	-	0.0044	17.1	1.6	0.009	16.1	1.6	1.5	1	1	0	1	1	1	1	Zinc	ribbon	domain
DNA_RNApol_7kD	PF03604.13	gi|257053391|ref|YP_003131224.1|	-	0.0048	16.5	0.8	0.0069	16.0	0.8	1.2	1	0	0	1	1	1	1	DNA	directed	RNA	polymerase,	7	kDa	subunit
HypA	PF01155.19	gi|257053391|ref|YP_003131224.1|	-	0.014	15.5	0.4	0.014	15.4	0.4	1.0	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
MetOD1	PF18546.1	gi|257053391|ref|YP_003131224.1|	-	0.018	15.0	0.0	0.018	15.0	0.0	1.0	1	0	0	1	1	1	0	Metanogen	output	domain	1
A2L_zn_ribbon	PF08792.10	gi|257053391|ref|YP_003131224.1|	-	0.028	14.1	0.1	1	9.1	0.0	2.1	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|257053391|ref|YP_003131224.1|	-	0.15	12.0	2.3	0.2	11.6	2.3	1.3	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
RNA_POL_M_15KD	PF02150.16	gi|257053391|ref|YP_003131224.1|	-	0.17	11.8	3.6	1.2	9.0	0.3	2.2	1	1	1	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
DUF2061	PF09834.9	gi|257053392|ref|YP_003131225.1|	-	2.2e-16	60.1	0.5	3.1e-16	59.6	0.5	1.2	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2061)
HisKA_4TM	PF16926.5	gi|257053393|ref|YP_003131226.1|	-	1.5e-09	37.7	5.4	2.9e-09	36.7	5.4	1.4	1	0	0	1	1	1	1	Archaeal	4TM	region	of	histidine	kinase
DUF1129	PF06570.11	gi|257053393|ref|YP_003131226.1|	-	0.017	14.6	0.8	0.026	14.0	0.5	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1129)
Ferric_reduct	PF01794.19	gi|257053393|ref|YP_003131226.1|	-	0.063	13.4	1.8	0.11	12.7	1.8	1.2	1	0	0	1	1	1	0	Ferric	reductase	like	transmembrane	component
DUF3708	PF12501.8	gi|257053393|ref|YP_003131226.1|	-	0.076	12.8	1.4	0.15	11.9	1.4	1.6	1	1	0	1	1	1	0	Phosphate	ATP-binding	cassette	transporter
HsbA	PF12296.8	gi|257053393|ref|YP_003131226.1|	-	0.081	13.4	0.2	0.18	12.3	0.2	1.5	1	0	0	1	1	1	0	Hydrophobic	surface	binding	protein	A
Syntaxin-6_N	PF09177.11	gi|257053393|ref|YP_003131226.1|	-	0.21	12.2	2.2	0.41	11.2	2.2	1.4	1	0	0	1	1	1	0	Syntaxin	6,	N-terminal
T2SSM	PF04612.12	gi|257053393|ref|YP_003131226.1|	-	1.6	8.8	7.8	0.73	9.9	0.4	3.3	3	1	1	4	4	4	0	Type	II	secretion	system	(T2SS),	protein	M
MerC	PF03203.14	gi|257053393|ref|YP_003131226.1|	-	1.8	9.1	8.8	13	6.3	0.6	2.4	1	1	1	2	2	2	0	MerC	mercury	resistance	protein
Usp	PF00582.26	gi|257053394|ref|YP_003131227.1|	-	3.3e-27	95.7	1.3	3.7e-27	95.5	1.3	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
BKACE	PF05853.12	gi|257053394|ref|YP_003131227.1|	-	0.064	12.6	0.1	0.077	12.3	0.1	1.2	1	0	0	1	1	1	0	beta-keto	acid	cleavage	enzyme
PHO4	PF01384.20	gi|257053395|ref|YP_003131228.1|	-	5.5e-40	137.4	36.4	1.5e-39	136.0	34.9	2.1	1	1	0	1	1	1	1	Phosphate	transporter	family
FtsX	PF02687.21	gi|257053395|ref|YP_003131228.1|	-	0.0077	16.7	0.7	0.0077	16.7	0.7	4.1	2	2	1	3	3	3	1	FtsX-like	permease	family
E1-E2_ATPase	PF00122.20	gi|257053396|ref|YP_003131229.1|	-	6.8e-52	175.6	6.5	2.2e-51	174.0	4.4	2.3	2	0	0	2	2	2	1	E1-E2	ATPase
Cation_ATPase_C	PF00689.21	gi|257053396|ref|YP_003131229.1|	-	6.1e-39	133.6	7.0	6.1e-39	133.6	7.0	2.2	2	0	0	2	2	2	1	Cation	transporting	ATPase,	C-terminus
Hydrolase	PF00702.26	gi|257053396|ref|YP_003131229.1|	-	4.7e-20	72.8	10.8	2.7e-19	70.3	10.8	2.2	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Cation_ATPase_N	PF00690.26	gi|257053396|ref|YP_003131229.1|	-	6.3e-20	70.6	0.0	1.3e-19	69.6	0.0	1.6	1	0	0	1	1	1	1	Cation	transporter/ATPase,	N-terminus
Cation_ATPase	PF13246.6	gi|257053396|ref|YP_003131229.1|	-	1.5e-14	53.8	0.0	4.6e-14	52.3	0.0	1.9	1	0	0	1	1	1	1	Cation	transport	ATPase	(P-type)
Hydrolase_3	PF08282.12	gi|257053396|ref|YP_003131229.1|	-	1.1e-05	25.3	0.5	0.02	14.7	0.5	2.2	1	1	1	2	2	2	2	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|257053396|ref|YP_003131229.1|	-	0.033	14.6	0.3	0.07	13.5	0.3	1.6	1	0	0	1	1	1	0	haloacid	dehalogenase-like	hydrolase
DUF1508	PF07411.12	gi|257053397|ref|YP_003131230.1|	-	8.3e-22	76.8	1.1	1e-21	76.5	1.1	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1508)
HupF_HypC	PF01455.18	gi|257053398|ref|YP_003131231.1|	-	9.4e-21	73.7	0.2	1.3e-20	73.2	0.2	1.2	1	0	0	1	1	1	1	HupF/HypC	family
DUF5022	PF16425.5	gi|257053398|ref|YP_003131231.1|	-	0.04	13.4	0.1	0.045	13.2	0.1	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5022)
HypD	PF01924.16	gi|257053399|ref|YP_003131232.1|	-	2.8e-132	441.1	0.0	3.2e-132	440.9	0.0	1.0	1	0	0	1	1	1	1	Hydrogenase	formation	hypA	family
MtrH	PF02007.18	gi|257053399|ref|YP_003131232.1|	-	0.076	12.1	0.0	0.13	11.3	0.0	1.3	1	0	0	1	1	1	0	Tetrahydromethanopterin	S-methyltransferase	MtrH	subunit
AIRS_C	PF02769.22	gi|257053400|ref|YP_003131233.1|	-	3.6e-25	88.9	3.2	6.1e-25	88.2	3.2	1.4	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.24	gi|257053400|ref|YP_003131233.1|	-	2e-16	60.4	3.6	5.4e-16	59.0	3.6	1.8	1	0	0	1	1	1	1	AIR	synthase	related	protein,	N-terminal	domain
Prot_ATP_ID_OB	PF16450.5	gi|257053400|ref|YP_003131233.1|	-	4.2	7.4	7.7	8.4	6.4	0.1	4.0	5	0	0	5	5	5	0	Proteasomal	ATPase	OB	C-terminal	domain
HypA	PF01155.19	gi|257053401|ref|YP_003131234.1|	-	1.8e-21	76.3	0.0	2e-21	76.1	0.0	1.0	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DUF3797	PF12677.7	gi|257053401|ref|YP_003131234.1|	-	0.072	13.0	0.2	1.2	9.1	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3797)
cobW	PF02492.19	gi|257053402|ref|YP_003131235.1|	-	5.2e-23	81.5	0.0	7.2e-23	81.1	0.0	1.2	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
MeaB	PF03308.16	gi|257053402|ref|YP_003131235.1|	-	2.5e-05	23.4	0.0	0.00076	18.5	0.0	2.1	2	0	0	2	2	2	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
DUF87	PF01935.17	gi|257053402|ref|YP_003131235.1|	-	0.0019	18.3	0.0	0.0035	17.5	0.0	1.4	1	0	0	1	1	1	1	Helicase	HerA,	central	domain
RsgA_GTPase	PF03193.16	gi|257053402|ref|YP_003131235.1|	-	0.0031	17.4	0.0	1.9	8.4	0.0	2.2	2	0	0	2	2	2	2	RsgA	GTPase
AAA_16	PF13191.6	gi|257053402|ref|YP_003131235.1|	-	0.031	14.7	0.1	0.1	13.0	0.0	1.8	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_22	PF13401.6	gi|257053402|ref|YP_003131235.1|	-	0.037	14.3	0.0	0.067	13.5	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
GTP_EFTU	PF00009.27	gi|257053402|ref|YP_003131235.1|	-	0.049	13.2	0.0	7.9	6.0	0.0	2.4	2	0	0	2	2	2	0	Elongation	factor	Tu	GTP	binding	domain
AAA_33	PF13671.6	gi|257053402|ref|YP_003131235.1|	-	0.061	13.5	0.0	0.12	12.5	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
PduV-EutP	PF10662.9	gi|257053402|ref|YP_003131235.1|	-	0.09	12.5	0.0	11	5.7	0.0	2.2	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
MobB	PF03205.14	gi|257053402|ref|YP_003131235.1|	-	0.11	12.4	0.0	0.22	11.5	0.0	1.6	1	1	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
TrwB_AAD_bind	PF10412.9	gi|257053402|ref|YP_003131235.1|	-	0.11	11.4	0.0	0.16	10.9	0.0	1.1	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
Ribonuc_red_sm	PF00268.21	gi|257053403|ref|YP_003131236.1|	-	1.2e-81	274.3	0.0	1.8e-81	273.7	0.0	1.2	1	0	0	1	1	1	1	Ribonucleotide	reductase,	small	chain
Rap1_C	PF11626.8	gi|257053403|ref|YP_003131236.1|	-	0.11	12.6	0.0	0.2	11.8	0.0	1.5	1	0	0	1	1	1	0	TRF2-interacting	telomeric	protein/Rap1	-	C	terminal	domain
Ribonuc_red_lgC	PF02867.15	gi|257053404|ref|YP_003131237.1|	-	9.6e-176	585.4	0.0	1.1e-175	585.1	0.0	1.1	1	0	0	1	1	1	1	Ribonucleotide	reductase,	barrel	domain
Ribonuc_red_lgN	PF00317.21	gi|257053404|ref|YP_003131237.1|	-	1.2e-22	79.6	0.7	2.9e-22	78.5	0.0	2.0	2	0	0	2	2	2	1	Ribonucleotide	reductase,	all-alpha	domain
ATP-cone	PF03477.16	gi|257053405|ref|YP_003131238.1|	-	4.2e-18	65.7	0.2	5.3e-18	65.4	0.2	1.1	1	0	0	1	1	1	1	ATP	cone	domain
Zn_Tnp_IS1595	PF12760.7	gi|257053405|ref|YP_003131238.1|	-	0.0019	18.1	0.5	0.0031	17.5	0.5	1.4	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
CM_2	PF01817.21	gi|257053405|ref|YP_003131238.1|	-	0.037	14.4	0.1	0.074	13.4	0.1	1.5	1	0	0	1	1	1	0	Chorismate	mutase	type	II
Ogr_Delta	PF04606.12	gi|257053405|ref|YP_003131238.1|	-	0.044	13.8	0.2	0.1	12.6	0.2	1.6	1	0	0	1	1	1	0	Ogr/Delta-like	zinc	finger
zf-ZPR1	PF03367.13	gi|257053405|ref|YP_003131238.1|	-	0.049	13.5	0.1	0.061	13.2	0.1	1.6	1	1	0	1	1	1	0	ZPR1	zinc-finger	domain
Lar_restr_allev	PF14354.6	gi|257053405|ref|YP_003131238.1|	-	0.09	13.2	0.1	0.15	12.5	0.1	1.4	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
Barstar	PF01337.18	gi|257053405|ref|YP_003131238.1|	-	0.14	12.2	0.1	11	6.1	0.1	2.4	1	1	0	2	2	2	0	Barstar	(barnase	inhibitor)
Zn-ribbon_8	PF09723.10	gi|257053405|ref|YP_003131238.1|	-	0.15	12.2	1.5	9.5	6.4	0.1	2.4	2	0	0	2	2	2	0	Zinc	ribbon	domain
TFIIS_C	PF01096.18	gi|257053405|ref|YP_003131238.1|	-	0.22	11.4	2.4	1.4	8.8	2.4	2.1	1	1	0	1	1	1	0	Transcription	factor	S-II	(TFIIS)
zf-C2H2	PF00096.26	gi|257053405|ref|YP_003131238.1|	-	0.42	11.2	3.5	1.4	9.5	0.2	2.6	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
UPF0547	PF10571.9	gi|257053405|ref|YP_003131238.1|	-	1.8	8.7	4.9	2.5	8.3	0.3	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
MFS_1	PF07690.16	gi|257053406|ref|YP_003131239.1|	-	9.6e-30	103.7	64.6	6.4e-28	97.7	35.1	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_1	PF07690.16	gi|257053407|ref|YP_003131240.1|	-	3.5e-31	108.4	49.8	1.6e-23	83.2	23.1	2.2	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.7	gi|257053407|ref|YP_003131240.1|	-	0.00055	18.9	5.2	0.00055	18.9	5.2	3.0	1	1	1	3	3	3	2	MFS_1	like	family
MFS_4	PF06779.14	gi|257053407|ref|YP_003131240.1|	-	0.013	14.8	28.5	0.09	12.1	28.5	2.6	1	1	0	1	1	1	0	Uncharacterised	MFS-type	transporter	YbfB
Sua5_yciO_yrdC	PF01300.18	gi|257053408|ref|YP_003131241.1|	-	8.5e-46	155.7	0.0	2.1e-45	154.4	0.0	1.7	2	0	0	2	2	2	1	Telomere	recombination
HypF_C	PF17788.1	gi|257053408|ref|YP_003131241.1|	-	4.8e-30	104.3	0.2	1e-29	103.2	0.2	1.6	1	0	0	1	1	1	1	HypF	Kae1-like	domain
zf-HYPF	PF07503.12	gi|257053408|ref|YP_003131241.1|	-	1.4e-29	101.5	8.5	1.1e-16	60.3	2.5	2.4	2	0	0	2	2	2	2	HypF	finger
Acylphosphatase	PF00708.18	gi|257053408|ref|YP_003131241.1|	-	3.1e-23	82.0	0.0	5.9e-23	81.1	0.0	1.5	1	0	0	1	1	1	1	Acylphosphatase
DZR	PF12773.7	gi|257053408|ref|YP_003131241.1|	-	0.0011	18.9	3.1	0.27	11.3	0.1	2.4	2	0	0	2	2	2	2	Double	zinc	ribbon
Peptidase_M22	PF00814.25	gi|257053408|ref|YP_003131241.1|	-	0.012	15.3	0.2	0.03	14.0	0.0	1.7	2	0	0	2	2	2	0	Glycoprotease	family
Acetate_kinase	PF00871.17	gi|257053408|ref|YP_003131241.1|	-	0.22	10.2	0.1	0.4	9.3	0.1	1.4	1	0	0	1	1	1	0	Acetokinase	family
NMD3	PF04981.13	gi|257053408|ref|YP_003131241.1|	-	0.26	10.7	2.0	0.77	9.2	1.0	2.0	1	1	1	2	2	2	0	NMD3	family
MatE	PF01554.18	gi|257053409|ref|YP_003131242.1|	-	4.9e-46	156.3	33.7	2.8e-26	92.1	8.4	2.4	3	0	0	3	3	3	2	MatE
Polysacc_synt_C	PF14667.6	gi|257053409|ref|YP_003131242.1|	-	1.5e-11	44.5	5.8	1.5e-11	44.5	5.8	4.7	3	3	1	4	4	4	1	Polysaccharide	biosynthesis	C-terminal	domain
Complex1_49kDa	PF00346.19	gi|257053410|ref|YP_003131243.1|	-	4.2e-83	278.6	0.0	1.3e-81	273.6	0.0	2.1	1	1	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	49	Kd	subunit
Complex1_30kDa	PF00329.19	gi|257053410|ref|YP_003131243.1|	-	1.3e-36	125.9	0.1	2.6e-36	124.9	0.1	1.5	1	0	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	30	Kd	subunit
HTH_10	PF04967.12	gi|257053411|ref|YP_003131244.1|	-	4e-20	71.4	0.0	6.1e-20	70.8	0.0	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_38	PF13936.6	gi|257053411|ref|YP_003131244.1|	-	0.0011	18.7	0.1	0.0033	17.1	0.0	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_20	PF12840.7	gi|257053411|ref|YP_003131244.1|	-	0.0033	17.5	0.0	0.0066	16.5	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
GerE	PF00196.19	gi|257053411|ref|YP_003131244.1|	-	0.0039	16.7	0.0	0.025	14.1	0.0	2.1	1	1	0	1	1	1	1	Bacterial	regulatory	proteins,	luxR	family
MarR_2	PF12802.7	gi|257053411|ref|YP_003131244.1|	-	0.0042	16.9	0.1	0.012	15.5	0.1	1.8	2	0	0	2	2	2	1	MarR	family
UPF0122	PF04297.14	gi|257053411|ref|YP_003131244.1|	-	0.018	15.2	0.0	0.034	14.4	0.0	1.4	1	0	0	1	1	1	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
HTH_23	PF13384.6	gi|257053411|ref|YP_003131244.1|	-	0.03	14.1	0.1	0.059	13.2	0.1	1.5	1	0	0	1	1	1	0	Homeodomain-like	domain
Sigma70_r4	PF04545.16	gi|257053411|ref|YP_003131244.1|	-	0.03	13.8	0.0	0.12	11.9	0.0	2.0	2	1	0	2	2	2	0	Sigma-70,	region	4
HTH_1	PF00126.27	gi|257053411|ref|YP_003131244.1|	-	0.053	13.5	0.0	0.14	12.2	0.0	1.7	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_5	PF01022.20	gi|257053411|ref|YP_003131244.1|	-	0.056	13.3	0.0	0.099	12.5	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.6	gi|257053411|ref|YP_003131244.1|	-	0.085	12.4	0.0	0.14	11.7	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Sigma70_r4_2	PF08281.12	gi|257053411|ref|YP_003131244.1|	-	0.13	12.0	0.1	0.37	10.5	0.1	1.9	1	1	0	1	1	1	0	Sigma-70,	region	4
DUF2268	PF10026.9	gi|257053412|ref|YP_003131245.1|	-	0.008	15.8	0.0	0.014	14.9	0.0	1.3	1	0	0	1	1	1	1	Predicted	Zn-dependent	protease	(DUF2268)
Pneumo_att_G	PF05539.11	gi|257053412|ref|YP_003131245.1|	-	0.064	12.8	24.6	0.094	12.3	24.6	1.1	1	0	0	1	1	1	0	Pneumovirinae	attachment	membrane	glycoprotein	G
SpoIIIAH	PF12685.7	gi|257053412|ref|YP_003131245.1|	-	0.16	11.7	2.4	0.29	10.9	2.4	1.4	1	0	0	1	1	1	0	SpoIIIAH-like	protein
PARM	PF17061.5	gi|257053412|ref|YP_003131245.1|	-	0.39	10.8	31.5	0.92	9.6	31.5	1.5	1	0	0	1	1	1	0	PARM
ILVD_EDD	PF00920.21	gi|257053413|ref|YP_003131246.1|	-	1.2e-199	664.2	0.1	1.4e-199	664.0	0.1	1.0	1	0	0	1	1	1	1	Dehydratase	family
Acetyltransf_7	PF13508.7	gi|257053414|ref|YP_003131247.1|	-	2.2e-07	31.2	0.0	3.5e-07	30.6	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|257053414|ref|YP_003131247.1|	-	1.7e-06	27.9	0.0	2.6e-06	27.4	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|257053414|ref|YP_003131247.1|	-	1.8e-05	24.9	0.0	3e-05	24.2	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_9	PF13527.7	gi|257053414|ref|YP_003131247.1|	-	0.00036	20.6	0.0	0.00094	19.3	0.0	1.7	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|257053414|ref|YP_003131247.1|	-	0.019	14.9	0.0	0.032	14.2	0.0	1.3	1	0	0	1	1	1	0	FR47-like	protein
GAF	PF01590.26	gi|257053416|ref|YP_003131249.1|	-	5.1e-09	36.9	0.1	1.3e-08	35.5	0.0	1.6	2	0	0	2	2	2	1	GAF	domain
GAF_3	PF13492.6	gi|257053416|ref|YP_003131249.1|	-	4.4e-06	27.1	0.0	8.2e-06	26.2	0.0	1.4	1	0	0	1	1	1	1	GAF	domain
GAF_2	PF13185.6	gi|257053416|ref|YP_003131249.1|	-	0.0001	22.6	0.2	0.00039	20.7	0.1	2.0	2	0	0	2	2	2	1	GAF	domain
Response_reg	PF00072.24	gi|257053416|ref|YP_003131249.1|	-	0.0063	16.7	0.1	0.011	15.8	0.1	1.5	1	0	0	1	1	1	1	Response	regulator	receiver	domain
PAS_4	PF08448.10	gi|257053417|ref|YP_003131250.1|	-	4.2e-46	155.7	23.5	4.8e-17	62.2	0.1	6.5	6	0	0	6	6	6	5	PAS	fold
PAS	PF00989.25	gi|257053417|ref|YP_003131250.1|	-	4.3e-40	136.2	2.0	2.5e-18	66.1	0.0	5.9	5	1	0	5	5	5	4	PAS	fold
PAS_3	PF08447.12	gi|257053417|ref|YP_003131250.1|	-	5.7e-38	129.1	2.7	2.3e-21	75.9	0.2	5.3	5	0	0	5	5	4	3	PAS	fold
PAS_9	PF13426.7	gi|257053417|ref|YP_003131250.1|	-	4.4e-32	110.4	0.1	5.4e-14	52.3	0.0	5.6	5	0	0	5	5	5	4	PAS	domain
PAS_8	PF13188.7	gi|257053417|ref|YP_003131250.1|	-	5.9e-30	102.8	5.2	1.5e-07	31.3	0.0	5.9	5	0	0	5	5	5	5	PAS	domain
Response_reg	PF00072.24	gi|257053417|ref|YP_003131250.1|	-	1.3e-20	73.6	0.6	8.8e-20	71.0	0.0	2.5	2	0	0	2	2	2	1	Response	regulator	receiver	domain
HATPase_c	PF02518.26	gi|257053417|ref|YP_003131250.1|	-	1.6e-19	70.5	0.0	3.4e-19	69.4	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_7	PF12860.7	gi|257053417|ref|YP_003131250.1|	-	7.2e-14	51.9	1.4	1.1e-06	28.8	0.0	5.3	4	2	0	4	4	4	2	PAS	fold
HATPase_c_2	PF13581.6	gi|257053417|ref|YP_003131250.1|	-	3.9e-09	36.5	0.1	1.4e-08	34.7	0.1	2.0	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HATPase_c_5	PF14501.6	gi|257053417|ref|YP_003131250.1|	-	0.00011	22.0	0.0	0.00045	20.1	0.0	1.9	2	0	0	2	2	2	1	GHKL	domain
SPOB_a	PF14689.6	gi|257053417|ref|YP_003131250.1|	-	0.00049	19.7	1.1	0.0018	17.9	0.7	2.2	2	0	0	2	2	2	1	Sensor_kinase_SpoOB-type,	alpha-helical	domain
HisKA_4TM	PF16926.5	gi|257053417|ref|YP_003131250.1|	-	0.00058	19.5	0.0	0.001	18.7	0.0	1.3	1	0	0	1	1	1	1	Archaeal	4TM	region	of	histidine	kinase
HisKA	PF00512.25	gi|257053417|ref|YP_003131250.1|	-	0.0086	16.1	0.7	0.0086	16.1	0.7	4.0	3	1	0	3	3	2	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_3	PF13589.6	gi|257053417|ref|YP_003131250.1|	-	0.047	13.5	0.0	0.11	12.4	0.0	1.5	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c	PF02518.26	gi|257053418|ref|YP_003131251.1|	-	3.8e-19	69.3	0.0	6.5e-19	68.5	0.0	1.3	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.6	gi|257053418|ref|YP_003131251.1|	-	1.9e-08	34.3	0.1	4.4e-08	33.1	0.1	1.6	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HisKA_4TM	PF16926.5	gi|257053418|ref|YP_003131251.1|	-	0.00064	19.3	0.2	0.0012	18.5	0.2	1.4	1	0	0	1	1	1	1	Archaeal	4TM	region	of	histidine	kinase
HisKA	PF00512.25	gi|257053418|ref|YP_003131251.1|	-	0.00065	19.7	2.0	0.00072	19.5	0.4	2.0	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_3	PF13589.6	gi|257053418|ref|YP_003131251.1|	-	0.0007	19.4	0.0	0.0013	18.6	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_5	PF14501.6	gi|257053418|ref|YP_003131251.1|	-	0.0022	17.8	0.0	0.0044	16.9	0.0	1.5	1	0	0	1	1	1	1	GHKL	domain
SPOB_a	PF14689.6	gi|257053418|ref|YP_003131251.1|	-	0.015	15.0	1.3	0.033	13.9	1.3	1.5	1	0	0	1	1	1	0	Sensor_kinase_SpoOB-type,	alpha-helical	domain
DUF1611_N	PF17396.2	gi|257053418|ref|YP_003131251.1|	-	0.093	13.0	0.0	21	5.4	0.0	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1611_N)	Rossmann-like	domain
ATPase	PF06745.13	gi|257053419|ref|YP_003131252.1|	-	1.8e-67	227.1	0.0	8e-37	126.8	0.0	2.0	2	0	0	2	2	2	2	KaiC
AAA_25	PF13481.6	gi|257053419|ref|YP_003131252.1|	-	1.5e-15	57.3	0.1	4.2e-10	39.5	0.0	2.6	2	1	0	2	2	2	2	AAA	domain
GvpD	PF07088.11	gi|257053419|ref|YP_003131252.1|	-	1.5e-09	37.0	3.2	6.1e-08	31.7	3.0	3.0	1	1	0	1	1	1	1	GvpD	gas	vesicle	protein
RecA	PF00154.21	gi|257053419|ref|YP_003131252.1|	-	2.5e-08	33.7	1.0	9.4e-05	22.0	0.1	2.4	3	0	0	3	3	3	2	recA	bacterial	DNA	recombination	protein
Rad51	PF08423.11	gi|257053419|ref|YP_003131252.1|	-	6.5e-07	28.9	0.5	0.001	18.4	0.1	2.3	2	0	0	2	2	2	2	Rad51
DnaB_C	PF03796.15	gi|257053419|ref|YP_003131252.1|	-	9.8e-07	28.4	0.0	0.0065	15.8	0.0	2.4	2	1	0	2	2	2	2	DnaB-like	helicase	C	terminal	domain
T2SSE	PF00437.20	gi|257053419|ref|YP_003131252.1|	-	9.4e-06	24.9	0.1	0.0083	15.2	0.2	2.3	2	0	0	2	2	2	2	Type	II/IV	secretion	system	protein
AAA_16	PF13191.6	gi|257053419|ref|YP_003131252.1|	-	1e-05	26.0	0.0	0.066	13.6	0.0	2.4	2	0	0	2	2	2	2	AAA	ATPase	domain
DUF2075	PF09848.9	gi|257053419|ref|YP_003131252.1|	-	2.6e-05	23.7	0.0	0.012	14.9	0.0	2.2	2	0	0	2	2	2	2	Uncharacterized	conserved	protein	(DUF2075)
AAA_14	PF13173.6	gi|257053419|ref|YP_003131252.1|	-	8.1e-05	22.7	0.0	0.28	11.2	0.0	3.0	2	1	0	2	2	2	2	AAA	domain
AAA_22	PF13401.6	gi|257053419|ref|YP_003131252.1|	-	0.00011	22.4	0.4	0.037	14.3	0.4	3.2	2	1	0	2	2	2	1	AAA	domain
PAXNEB	PF05625.11	gi|257053419|ref|YP_003131252.1|	-	0.00014	21.2	3.8	0.098	11.8	0.6	2.6	3	0	0	3	3	3	2	PAXNEB	protein
IstB_IS21	PF01695.17	gi|257053419|ref|YP_003131252.1|	-	0.0032	17.2	0.0	1.8	8.2	0.0	2.4	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
AAA_7	PF12775.7	gi|257053419|ref|YP_003131252.1|	-	0.0052	16.3	0.0	0.76	9.3	0.0	2.2	2	0	0	2	2	2	1	P-loop	containing	dynein	motor	region
AAA	PF00004.29	gi|257053419|ref|YP_003131252.1|	-	0.0063	16.9	0.1	0.93	9.9	0.0	3.0	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
ABC_tran	PF00005.27	gi|257053419|ref|YP_003131252.1|	-	0.007	16.9	0.0	0.31	11.6	0.1	2.4	2	0	0	2	2	2	1	ABC	transporter
NACHT	PF05729.12	gi|257053419|ref|YP_003131252.1|	-	0.0071	16.3	0.0	1.7	8.6	0.0	2.4	2	0	0	2	2	2	1	NACHT	domain
AAA_30	PF13604.6	gi|257053419|ref|YP_003131252.1|	-	0.015	15.1	0.2	0.99	9.1	0.1	2.4	2	0	0	2	2	2	0	AAA	domain
AAA_24	PF13479.6	gi|257053419|ref|YP_003131252.1|	-	0.018	14.8	0.2	8.1	6.1	0.0	2.9	2	1	0	2	2	2	0	AAA	domain
AAA_18	PF13238.6	gi|257053419|ref|YP_003131252.1|	-	0.022	15.3	0.0	6.6	7.3	0.0	2.6	2	0	0	2	2	2	0	AAA	domain
AAA_19	PF13245.6	gi|257053419|ref|YP_003131252.1|	-	0.033	14.5	1.3	4.2	7.7	0.1	2.5	2	1	0	2	2	2	0	AAA	domain
DEAD	PF00270.29	gi|257053419|ref|YP_003131252.1|	-	0.059	13.1	0.1	12	5.7	0.1	2.4	2	0	0	2	2	2	0	DEAD/DEAH	box	helicase
AAA_11	PF13086.6	gi|257053419|ref|YP_003131252.1|	-	0.085	12.6	0.0	2.7	7.7	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
cobW	PF02492.19	gi|257053419|ref|YP_003131252.1|	-	0.1	12.2	0.1	1.2	8.7	0.0	2.3	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
TsaE	PF02367.17	gi|257053419|ref|YP_003131252.1|	-	0.1	12.6	2.2	2.6	8.1	0.2	2.4	2	0	0	2	2	2	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_33	PF13671.6	gi|257053419|ref|YP_003131252.1|	-	0.11	12.6	0.0	11	6.1	0.0	2.5	2	0	0	2	2	2	0	AAA	domain
AAA_29	PF13555.6	gi|257053419|ref|YP_003131252.1|	-	0.17	11.6	3.0	1.5	8.6	1.0	2.4	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
Zeta_toxin	PF06414.12	gi|257053419|ref|YP_003131252.1|	-	0.2	10.9	0.5	5.1	6.3	0.1	2.5	2	0	0	2	2	2	0	Zeta	toxin
AAA_23	PF13476.6	gi|257053419|ref|YP_003131252.1|	-	0.27	11.7	0.6	0.51	10.8	0.6	1.5	1	0	0	1	1	1	0	AAA	domain
DICT	PF10069.9	gi|257053420|ref|YP_003131253.1|	-	1.8e-09	37.5	0.0	2.8e-09	36.8	0.0	1.3	1	0	0	1	1	1	1	Sensory	domain	in	DIguanylate	Cyclases	and	Two-component	system
MCPsignal	PF00015.21	gi|257053421|ref|YP_003131254.1|	-	1.5e-49	168.1	58.8	2.1e-46	157.8	28.4	4.2	1	1	3	4	4	4	4	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
DUF948	PF06103.11	gi|257053421|ref|YP_003131254.1|	-	4.6e-07	30.0	36.7	0.0021	18.3	1.4	5.1	2	2	3	5	5	5	2	Bacterial	protein	of	unknown	function	(DUF948)
PAS_9	PF13426.7	gi|257053421|ref|YP_003131254.1|	-	1.5e-06	28.4	1.0	4.4e-06	26.9	0.3	2.1	2	0	0	2	2	2	1	PAS	domain
Laminin_II	PF06009.12	gi|257053421|ref|YP_003131254.1|	-	2.5e-05	24.3	38.6	0.035	14.1	3.5	5.0	2	2	3	5	5	5	3	Laminin	Domain	II
DUF1664	PF07889.12	gi|257053421|ref|YP_003131254.1|	-	0.00013	22.0	25.7	0.012	15.7	6.9	4.3	1	1	2	4	4	4	3	Protein	of	unknown	function	(DUF1664)
Syntaxin-6_N	PF09177.11	gi|257053421|ref|YP_003131254.1|	-	0.00073	20.0	26.2	0.046	14.3	1.9	4.4	2	2	2	4	4	4	3	Syntaxin	6,	N-terminal
Spectrin	PF00435.21	gi|257053421|ref|YP_003131254.1|	-	0.00099	19.6	23.1	0.25	11.8	7.2	4.6	2	2	3	5	5	5	2	Spectrin	repeat
BLOC1_2	PF10046.9	gi|257053421|ref|YP_003131254.1|	-	0.0044	17.3	27.3	0.1	12.9	0.5	5.1	3	1	1	4	4	4	2	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
PAS_4	PF08448.10	gi|257053421|ref|YP_003131254.1|	-	0.0093	16.2	0.0	0.0093	16.2	0.0	2.8	3	2	1	4	4	2	1	PAS	fold
YkyA	PF10368.9	gi|257053421|ref|YP_003131254.1|	-	0.018	14.7	29.1	0.057	13.1	11.4	3.2	2	1	1	3	3	3	0	Putative	cell-wall	binding	lipoprotein
DUF745	PF05335.13	gi|257053421|ref|YP_003131254.1|	-	0.059	13.1	48.2	0.12	12.0	7.2	3.2	3	1	0	3	3	3	0	Protein	of	unknown	function	(DUF745)
NPV_P10	PF05531.12	gi|257053421|ref|YP_003131254.1|	-	0.083	13.4	28.5	0.44	11.1	2.7	5.9	2	2	4	6	6	6	0	Nucleopolyhedrovirus	P10	protein
Lebercilin	PF15619.6	gi|257053421|ref|YP_003131254.1|	-	0.092	12.4	15.9	0.4	10.3	9.1	2.6	2	1	0	2	2	2	0	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
PAS	PF00989.25	gi|257053421|ref|YP_003131254.1|	-	0.22	11.6	2.8	0.19	11.7	0.3	2.4	2	1	0	2	2	1	0	PAS	fold
TBCC_N	PF16752.5	gi|257053421|ref|YP_003131254.1|	-	0.22	11.9	28.4	0.14	12.6	1.2	4.5	1	1	4	5	5	5	0	Tubulin-specific	chaperone	C	N-terminal	domain
APG17	PF04108.12	gi|257053421|ref|YP_003131254.1|	-	0.23	10.5	33.7	0.18	10.9	1.4	3.9	1	1	1	3	3	3	0	Autophagy	protein	Apg17
Fib_alpha	PF08702.10	gi|257053421|ref|YP_003131254.1|	-	0.32	11.2	25.4	1.9	8.7	4.7	4.8	1	1	2	5	5	5	0	Fibrinogen	alpha/beta	chain	family
TMPIT	PF07851.13	gi|257053421|ref|YP_003131254.1|	-	0.32	10.2	18.7	0.1	11.9	1.5	3.3	1	1	1	3	3	3	0	TMPIT-like	protein
Spc7	PF08317.11	gi|257053421|ref|YP_003131254.1|	-	0.4	9.5	30.6	0.77	8.6	11.6	2.7	1	1	1	3	3	3	0	Spc7	kinetochore	protein
Med9	PF07544.13	gi|257053421|ref|YP_003131254.1|	-	0.47	10.6	10.8	2.1	8.5	0.2	4.5	3	2	1	4	4	4	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
PAS_10	PF13596.6	gi|257053421|ref|YP_003131254.1|	-	0.64	10.6	3.5	2.4	8.8	0.1	3.3	2	1	2	5	5	4	0	PAS	domain
T3SchapCesA	PF11439.8	gi|257053421|ref|YP_003131254.1|	-	0.71	10.1	11.2	0.28	11.3	0.3	4.6	2	1	4	6	6	5	0	Type	III	secretion	system	filament	chaperone	CesA
Sec34	PF04136.15	gi|257053421|ref|YP_003131254.1|	-	0.78	9.6	18.1	9.6	6.1	2.9	4.5	2	2	4	6	6	6	0	Sec34-like	family
DASH_Dad2	PF08654.10	gi|257053421|ref|YP_003131254.1|	-	0.83	10.1	23.9	12	6.3	0.7	5.1	1	1	2	3	3	3	0	DASH	complex	subunit	Dad2
Laminin_I	PF06008.14	gi|257053421|ref|YP_003131254.1|	-	0.92	9.2	34.4	0.17	11.6	7.2	3.4	1	1	2	3	3	3	0	Laminin	Domain	I
DASH_Dad4	PF08650.10	gi|257053421|ref|YP_003131254.1|	-	0.92	9.5	6.0	21	5.2	0.1	4.4	2	2	1	4	4	4	0	DASH	complex	subunit	Dad4
MAD	PF05557.13	gi|257053421|ref|YP_003131254.1|	-	0.99	7.7	24.6	0.077	11.4	15.3	2.1	1	1	1	2	2	2	0	Mitotic	checkpoint	protein
FlgN	PF05130.12	gi|257053421|ref|YP_003131254.1|	-	1.3	9.6	27.9	4.2	7.9	0.8	3.9	1	1	3	4	4	4	0	FlgN	protein
Allexi_40kDa	PF05549.11	gi|257053421|ref|YP_003131254.1|	-	1.3	8.5	14.8	0.88	9.0	1.5	3.2	1	1	2	3	3	3	0	Allexivirus	40kDa	protein
DUF3037	PF11236.8	gi|257053421|ref|YP_003131254.1|	-	1.5	9.3	13.1	0.34	11.3	3.8	3.5	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF3037)
CHIP_TPR_N	PF18391.1	gi|257053421|ref|YP_003131254.1|	-	1.5	9.7	18.9	12	6.8	0.6	4.7	3	1	1	4	4	4	0	CHIP	N-terminal	tetratricopeptide	repeat	domain
Tweety	PF04906.13	gi|257053421|ref|YP_003131254.1|	-	2.1	6.9	18.4	0.98	8.0	0.2	3.6	1	1	3	4	4	4	0	Tweety
SKA1	PF07160.12	gi|257053421|ref|YP_003131254.1|	-	2.8	7.7	17.8	2.9	7.7	2.9	2.8	2	1	0	2	2	2	0	Spindle	and	kinetochore-associated	protein	1
BORCS7	PF16088.5	gi|257053421|ref|YP_003131254.1|	-	3.2	8.1	18.6	1.9	8.8	2.3	4.4	2	2	2	4	4	4	0	BLOC-1-related	complex	sub-unit	7
CheZ	PF04344.13	gi|257053421|ref|YP_003131254.1|	-	3.3	7.6	26.8	0.44	10.4	7.9	3.3	1	1	2	3	3	3	0	Chemotaxis	phosphatase,	CheZ
Mod_r	PF07200.13	gi|257053421|ref|YP_003131254.1|	-	3.5	7.7	20.2	4	7.5	0.1	3.8	1	1	2	3	3	3	0	Modifier	of	rudimentary	(Mod(r))	protein
COG5	PF10392.9	gi|257053421|ref|YP_003131254.1|	-	4.3	7.5	14.5	13	6.0	0.2	4.4	3	2	2	5	5	5	0	Golgi	transport	complex	subunit	5
LOH1CR12	PF10158.9	gi|257053421|ref|YP_003131254.1|	-	5.1	7.1	18.9	2.3	8.2	0.4	4.1	1	1	3	4	4	4	0	Tumour	suppressor	protein
HBM	PF16591.5	gi|257053421|ref|YP_003131254.1|	-	5.2	6.4	31.3	0.075	12.5	1.7	3.4	1	1	1	3	3	3	0	Helical	bimodular	sensor	domain
Fmp27_WPPW	PF10359.9	gi|257053421|ref|YP_003131254.1|	-	5.4	5.7	15.7	1.1	8.0	4.3	2.8	1	1	1	3	3	3	0	RNA	pol	II	promoter	Fmp27	protein	domain
FlaC_arch	PF05377.11	gi|257053421|ref|YP_003131254.1|	-	5.7	7.4	25.5	1.8	9.0	0.5	6.4	3	2	4	7	7	7	0	Flagella	accessory	protein	C	(FlaC)
PhageMin_Tail	PF10145.9	gi|257053421|ref|YP_003131254.1|	-	6.4	6.6	36.6	0.5	10.2	11.6	2.9	1	1	1	2	2	2	0	Phage-related	minor	tail	protein
DUF489	PF04356.12	gi|257053421|ref|YP_003131254.1|	-	6.8	6.7	10.4	4.5	7.2	6.2	2.6	2	2	1	3	3	3	0	Protein	of	unknown	function	(DUF489)
Mce4_CUP1	PF11887.8	gi|257053421|ref|YP_003131254.1|	-	7.9	5.8	20.3	0.84	9.0	6.1	3.2	1	1	2	3	3	3	0	Cholesterol	uptake	porter	CUP1	of	Mce4,	putative
FH2	PF02181.23	gi|257053421|ref|YP_003131254.1|	-	9.2	5.3	17.3	5.3	6.1	0.6	3.3	1	1	0	2	2	2	0	Formin	Homology	2	Domain
GHMP_kinases_C	PF08544.13	gi|257053422|ref|YP_003131255.1|	-	0.00029	21.1	0.0	0.00062	20.1	0.0	1.5	1	0	0	1	1	1	1	GHMP	kinases	C	terminal
GHMP_kinases_N	PF00288.26	gi|257053422|ref|YP_003131255.1|	-	0.00046	20.4	0.1	0.00093	19.4	0.1	1.6	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
Abhydrolase_3	PF07859.13	gi|257053423|ref|YP_003131256.1|	-	3.4e-23	82.6	2.8	3.4e-23	82.6	2.8	2.7	2	1	0	2	2	2	1	alpha/beta	hydrolase	fold
Peptidase_S9	PF00326.21	gi|257053423|ref|YP_003131256.1|	-	2.4e-15	56.6	0.0	2.1e-14	53.5	0.0	2.2	1	1	0	1	1	1	1	Prolyl	oligopeptidase	family
COesterase	PF00135.28	gi|257053423|ref|YP_003131256.1|	-	2.1e-11	43.4	0.0	4.8e-11	42.2	0.0	1.5	1	1	0	1	1	1	1	Carboxylesterase	family
Abhydrolase_4	PF08386.10	gi|257053423|ref|YP_003131256.1|	-	1.8e-07	31.2	0.7	3.6e-07	30.2	0.0	1.8	2	0	0	2	2	2	1	TAP-like	protein
DLH	PF01738.18	gi|257053423|ref|YP_003131256.1|	-	7.2e-06	25.7	0.1	0.0067	16.0	0.0	2.9	2	1	0	2	2	2	2	Dienelactone	hydrolase	family
Esterase_phd	PF10503.9	gi|257053423|ref|YP_003131256.1|	-	1.5e-05	24.6	1.9	3.8e-05	23.3	1.5	1.9	2	0	0	2	2	2	1	Esterase	PHB	depolymerase
FSH1	PF03959.13	gi|257053423|ref|YP_003131256.1|	-	0.00016	21.4	0.0	0.00037	20.2	0.0	1.6	1	1	0	1	1	1	1	Serine	hydrolase	(FSH1)
Hydrolase_4	PF12146.8	gi|257053423|ref|YP_003131256.1|	-	0.00064	19.1	0.7	0.094	12.0	0.0	2.7	2	1	0	2	2	2	1	Serine	aminopeptidase,	S33
Abhydrolase_2	PF02230.16	gi|257053423|ref|YP_003131256.1|	-	0.0018	18.1	0.0	0.22	11.3	0.0	2.2	2	0	0	2	2	2	1	Phospholipase/Carboxylesterase
Abhydrolase_1	PF00561.20	gi|257053423|ref|YP_003131256.1|	-	0.074	12.7	0.0	0.17	11.5	0.0	1.6	1	0	0	1	1	1	0	alpha/beta	hydrolase	fold
UvrB_inter	PF17757.1	gi|257053424|ref|YP_003131257.1|	-	4.3e-32	110.1	0.0	1.4e-31	108.6	0.0	1.9	1	0	0	1	1	1	1	UvrB	interaction	domain
UvrB	PF12344.8	gi|257053424|ref|YP_003131257.1|	-	2.4e-17	62.5	0.5	5.3e-17	61.4	0.5	1.6	1	0	0	1	1	1	1	Ultra-violet	resistance	protein	B
Helicase_C	PF00271.31	gi|257053424|ref|YP_003131257.1|	-	9.7e-16	58.1	0.0	2.2e-15	57.0	0.0	1.6	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
UVR	PF02151.19	gi|257053424|ref|YP_003131257.1|	-	6.3e-10	38.5	7.4	6.3e-10	38.5	7.4	3.0	2	0	0	2	2	2	1	UvrB/uvrC	motif
ResIII	PF04851.15	gi|257053424|ref|YP_003131257.1|	-	1.4e-06	28.4	0.0	1.9e-05	24.8	0.0	2.3	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.29	gi|257053424|ref|YP_003131257.1|	-	0.0035	17.1	0.0	0.043	13.6	0.0	2.5	3	0	0	3	3	3	1	DEAD/DEAH	box	helicase
DUF87	PF01935.17	gi|257053424|ref|YP_003131257.1|	-	0.0041	17.3	2.3	0.054	13.6	0.0	3.4	3	1	1	4	4	4	1	Helicase	HerA,	central	domain
UB2H	PF14814.6	gi|257053424|ref|YP_003131257.1|	-	0.0068	16.4	0.0	0.02	14.9	0.0	1.8	1	0	0	1	1	1	1	Bifunctional	transglycosylase	second	domain
AAA_5	PF07728.14	gi|257053424|ref|YP_003131257.1|	-	0.031	14.3	0.1	0.45	10.5	0.0	2.9	3	1	0	3	3	3	0	AAA	domain	(dynein-related	subfamily)
AAA_19	PF13245.6	gi|257053424|ref|YP_003131257.1|	-	0.038	14.3	0.0	15	5.9	0.1	2.7	2	0	0	2	2	2	0	AAA	domain
Osmo_CC	PF08946.10	gi|257053424|ref|YP_003131257.1|	-	0.077	13.3	4.6	0.067	13.4	1.4	2.7	2	0	0	2	2	2	0	Osmosensory	transporter	coiled	coil
AAA_30	PF13604.6	gi|257053424|ref|YP_003131257.1|	-	0.11	12.2	0.1	0.62	9.7	0.0	2.2	2	1	1	3	3	3	0	AAA	domain
Cofilin_ADF	PF00241.20	gi|257053424|ref|YP_003131257.1|	-	0.13	12.1	0.2	0.49	10.2	0.2	2.0	1	0	0	1	1	1	0	Cofilin/tropomyosin-type	actin-binding	protein
DUF2075	PF09848.9	gi|257053424|ref|YP_003131257.1|	-	0.16	11.2	0.0	0.3	10.3	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
Sacchrp_dh_NADP	PF03435.18	gi|257053425|ref|YP_003131258.1|	-	2.8e-08	34.1	0.7	4.1e-08	33.6	0.1	1.6	2	0	0	2	2	2	1	Saccharopine	dehydrogenase	NADP	binding	domain
NAD_binding_10	PF13460.6	gi|257053425|ref|YP_003131258.1|	-	0.00011	22.1	0.2	0.00024	21.1	0.2	1.5	1	0	0	1	1	1	1	NAD(P)H-binding
adh_short	PF00106.25	gi|257053425|ref|YP_003131258.1|	-	0.06	12.8	0.4	0.81	9.1	0.4	2.1	1	1	0	1	1	1	0	short	chain	dehydrogenase
Epimerase	PF01370.21	gi|257053425|ref|YP_003131258.1|	-	0.2	11.1	0.1	0.37	10.2	0.1	1.5	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
Rubrerythrin	PF02915.17	gi|257053426|ref|YP_003131259.1|	-	4.8e-06	27.0	3.5	0.00017	22.0	0.8	2.5	2	1	1	3	3	3	2	Rubrerythrin
Ferritin	PF00210.24	gi|257053426|ref|YP_003131259.1|	-	0.074	13.0	2.3	0.18	11.7	1.4	2.2	1	1	1	2	2	2	0	Ferritin-like	domain
SbmA_BacA	PF05992.12	gi|257053427|ref|YP_003131260.1|	-	0.041	13.3	0.0	0.063	12.7	0.0	1.3	1	0	0	1	1	1	0	SbmA/BacA-like	family
ATPase	PF06745.13	gi|257053428|ref|YP_003131261.1|	-	3.9e-10	39.5	0.0	5.9e-05	22.5	0.1	2.1	2	0	0	2	2	2	2	KaiC
AAA_25	PF13481.6	gi|257053428|ref|YP_003131261.1|	-	0.0037	16.9	0.4	0.022	14.4	0.4	2.2	1	1	0	1	1	1	1	AAA	domain
Rad51	PF08423.11	gi|257053428|ref|YP_003131261.1|	-	0.13	11.5	0.0	0.68	9.2	0.0	2.1	2	0	0	2	2	2	0	Rad51
Baculo_PEP_C	PF04513.12	gi|257053429|ref|YP_003131262.1|	-	8.1e-05	22.7	1.9	0.048	13.7	0.4	2.5	2	1	0	2	2	2	2	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
AAA_13	PF13166.6	gi|257053429|ref|YP_003131262.1|	-	8.8e-05	21.4	5.4	0.00011	21.0	5.4	1.1	1	0	0	1	1	1	1	AAA	domain
Seryl_tRNA_N	PF02403.22	gi|257053429|ref|YP_003131262.1|	-	0.007	16.6	2.4	0.022	15.0	0.8	2.4	1	1	1	2	2	2	1	Seryl-tRNA	synthetase	N-terminal	domain
NPV_P10	PF05531.12	gi|257053429|ref|YP_003131262.1|	-	0.0091	16.4	8.4	0.038	14.4	0.8	3.4	2	1	0	2	2	2	1	Nucleopolyhedrovirus	P10	protein
HSBP1	PF06825.12	gi|257053429|ref|YP_003131262.1|	-	0.019	14.8	1.5	1.7	8.6	0.0	3.2	3	0	0	3	3	3	0	Heat	shock	factor	binding	protein	1
Taxilin	PF09728.9	gi|257053429|ref|YP_003131262.1|	-	0.022	14.0	1.6	0.11	11.6	1.5	1.8	1	1	0	1	1	1	0	Myosin-like	coiled-coil	protein
EzrA	PF06160.12	gi|257053429|ref|YP_003131262.1|	-	0.022	13.0	1.9	0.033	12.4	1.9	1.3	1	0	0	1	1	1	0	Septation	ring	formation	regulator,	EzrA
DUF294_C	PF10335.9	gi|257053429|ref|YP_003131262.1|	-	0.033	14.0	0.0	0.081	12.7	0.0	1.7	1	0	0	1	1	1	0	Putative	nucleotidyltransferase	substrate	binding	domain
BLOC1_2	PF10046.9	gi|257053429|ref|YP_003131262.1|	-	0.033	14.5	1.4	1.1	9.6	0.0	2.4	1	1	1	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
HypA	PF01155.19	gi|257053429|ref|YP_003131262.1|	-	0.04	13.9	1.5	0.11	12.5	1.4	1.8	1	1	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn-ribbon_8	PF09723.10	gi|257053429|ref|YP_003131262.1|	-	0.056	13.6	0.8	0.12	12.5	0.8	1.5	1	0	0	1	1	1	0	Zinc	ribbon	domain
Allexi_40kDa	PF05549.11	gi|257053429|ref|YP_003131262.1|	-	0.072	12.6	0.8	0.22	11.0	0.3	1.9	1	1	1	2	2	2	0	Allexivirus	40kDa	protein
DUF2408	PF10303.9	gi|257053429|ref|YP_003131262.1|	-	0.1	13.2	1.6	0.22	12.1	1.5	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2408)
FANCI_S4	PF14678.6	gi|257053429|ref|YP_003131262.1|	-	0.11	11.6	0.1	0.98	8.5	0.0	2.0	2	0	0	2	2	2	0	FANCI	solenoid	4
Apolipoprotein	PF01442.18	gi|257053429|ref|YP_003131262.1|	-	0.13	12.2	20.1	1.2	8.9	20.1	2.3	1	1	0	1	1	1	0	Apolipoprotein	A1/A4/E	domain
Tweety	PF04906.13	gi|257053429|ref|YP_003131262.1|	-	0.15	10.7	0.0	0.24	10.0	0.0	1.3	1	1	0	1	1	1	0	Tweety
Spc7	PF08317.11	gi|257053429|ref|YP_003131262.1|	-	0.16	10.8	9.7	0.3	9.9	3.7	2.1	1	1	1	2	2	2	0	Spc7	kinetochore	protein
DUF16	PF01519.16	gi|257053429|ref|YP_003131262.1|	-	0.19	12.2	2.1	0.43	11.1	0.2	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	DUF16
HrpB7	PF09486.10	gi|257053429|ref|YP_003131262.1|	-	0.25	11.7	26.5	0.044	14.2	20.3	2.5	1	1	0	2	2	2	0	Bacterial	type	III	secretion	protein	(HrpB7)
DUF4795	PF16043.5	gi|257053429|ref|YP_003131262.1|	-	0.27	10.8	6.4	0.28	10.8	1.4	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4795)
DUF1664	PF07889.12	gi|257053429|ref|YP_003131262.1|	-	0.28	11.2	5.4	5.7	7.0	0.4	2.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1664)
CLZ	PF16526.5	gi|257053429|ref|YP_003131262.1|	-	0.29	11.5	7.6	1.9	8.9	0.0	3.8	2	1	2	4	4	4	0	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
DUF2894	PF11445.8	gi|257053429|ref|YP_003131262.1|	-	0.31	11.5	5.5	0.12	12.8	1.3	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2894)
XhlA	PF10779.9	gi|257053429|ref|YP_003131262.1|	-	0.32	11.2	7.8	20	5.5	0.7	3.7	2	1	1	3	3	3	0	Haemolysin	XhlA
DUF35_N	PF12172.8	gi|257053429|ref|YP_003131262.1|	-	0.46	10.4	2.3	13	5.8	0.3	2.6	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Nudix_N_2	PF14803.6	gi|257053429|ref|YP_003131262.1|	-	0.63	10.0	4.9	5.8	6.9	4.5	2.5	1	1	1	2	2	2	0	Nudix	N-terminal
TBCC_N	PF16752.5	gi|257053429|ref|YP_003131262.1|	-	1.2	9.6	5.6	1.7	9.1	2.4	2.4	1	1	2	3	3	3	0	Tubulin-specific	chaperone	C	N-terminal	domain
DUF2205	PF10224.9	gi|257053429|ref|YP_003131262.1|	-	4.8	7.3	9.4	0.9	9.6	0.5	2.9	3	1	0	3	3	2	0	Short	coiled-coil	protein
CorA	PF01544.18	gi|257053429|ref|YP_003131262.1|	-	5.7	6.2	8.3	8.7	5.6	8.2	1.4	1	1	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
DUF3486	PF11985.8	gi|257053429|ref|YP_003131262.1|	-	7.7	6.9	15.4	38	4.6	0.1	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3486)
Rox3	PF08633.10	gi|257053430|ref|YP_003131263.1|	-	0.034	14.4	0.8	0.067	13.5	0.8	1.4	1	0	0	1	1	1	0	Rox3	mediator	complex	subunit
SPX	PF03105.19	gi|257053430|ref|YP_003131263.1|	-	6	6.7	8.8	6.8	6.5	8.8	1.1	1	0	0	1	1	1	0	SPX	domain
TFIIS_C	PF01096.18	gi|257053431|ref|YP_003131264.1|	-	5.6e-17	61.3	1.6	5.6e-17	61.3	1.6	3.1	3	0	0	3	3	3	1	Transcription	factor	S-II	(TFIIS)
RNA_POL_M_15KD	PF02150.16	gi|257053431|ref|YP_003131264.1|	-	3.5e-07	30.0	3.0	3.5e-07	30.0	3.0	3.1	3	0	0	3	3	3	1	RNA	polymerases	M/15	Kd	subunit
zf-ribbon_3	PF13248.6	gi|257053431|ref|YP_003131264.1|	-	2.8e-05	23.3	13.3	0.0051	16.2	0.5	3.4	3	0	0	3	3	3	2	zinc-ribbon	domain
DNA_RNApol_7kD	PF03604.13	gi|257053431|ref|YP_003131264.1|	-	3.2e-05	23.5	11.7	0.11	12.2	0.3	3.5	3	1	0	3	3	3	2	DNA	directed	RNA	polymerase,	7	kDa	subunit
DZR	PF12773.7	gi|257053431|ref|YP_003131264.1|	-	3.4e-05	23.8	10.0	0.00091	19.2	1.2	2.9	2	1	0	2	2	2	1	Double	zinc	ribbon
Zn_Tnp_IS1595	PF12760.7	gi|257053431|ref|YP_003131264.1|	-	0.00029	20.7	7.3	0.00062	19.7	0.3	2.9	2	1	0	2	2	2	1	Transposase	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|257053431|ref|YP_003131264.1|	-	0.0006	19.7	11.1	0.012	15.5	1.3	2.9	2	1	1	3	3	3	1	Putative	transposase	DNA-binding	domain
DUF2318	PF10080.9	gi|257053431|ref|YP_003131264.1|	-	0.0047	17.0	8.8	0.24	11.6	2.2	3.0	2	1	1	3	3	3	1	Predicted	membrane	protein	(DUF2318)
HypA	PF01155.19	gi|257053431|ref|YP_003131264.1|	-	0.0047	16.9	6.0	0.67	10.0	0.9	2.4	2	1	0	2	2	2	2	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Ribosomal_L37e	PF01907.19	gi|257053431|ref|YP_003131264.1|	-	0.0069	16.5	5.5	0.081	13.1	0.4	3.0	3	0	0	3	3	3	1	Ribosomal	protein	L37e
Rubredoxin_2	PF18073.1	gi|257053431|ref|YP_003131264.1|	-	0.0072	16.0	16.3	1.5	8.6	0.6	4.3	4	0	0	4	4	4	1	Rubredoxin	metal	binding	domain
zinc-ribbons_6	PF07191.12	gi|257053431|ref|YP_003131264.1|	-	0.01	15.8	8.5	0.073	13.1	1.4	2.3	2	1	0	2	2	2	0	zinc-ribbons
zinc_ribbon_2	PF13240.6	gi|257053431|ref|YP_003131264.1|	-	0.011	15.4	12.4	2.5	7.9	0.1	4.3	4	0	0	4	4	4	0	zinc-ribbon	domain
TackOD1	PF18551.1	gi|257053431|ref|YP_003131264.1|	-	0.019	14.7	5.3	0.9	9.2	1.7	2.2	1	1	1	2	2	2	0	Thaumarchaeal	output	domain	1
PHD	PF00628.29	gi|257053431|ref|YP_003131264.1|	-	0.023	14.6	10.8	0.13	12.2	0.4	2.6	2	1	0	2	2	2	0	PHD-finger
PhnA_Zn_Ribbon	PF08274.12	gi|257053431|ref|YP_003131264.1|	-	0.029	14.3	14.1	6.5	6.8	0.3	3.8	3	1	0	3	3	3	0	PhnA	Zinc-Ribbon
Prok-RING_1	PF14446.6	gi|257053431|ref|YP_003131264.1|	-	0.048	13.6	10.6	0.41	10.6	1.0	3.1	3	0	0	3	3	3	0	Prokaryotic	RING	finger	family	1
zf_UBZ	PF18439.1	gi|257053431|ref|YP_003131264.1|	-	0.052	13.2	13.6	1.1	8.9	0.2	4.0	3	1	1	4	4	4	0	Ubiquitin-Binding	Zinc	Finger
ADK_lid	PF05191.14	gi|257053431|ref|YP_003131264.1|	-	0.073	13.1	11.7	4	7.5	0.4	3.5	3	1	0	3	3	3	0	Adenylate	kinase,	active	site	lid
C1_1	PF00130.22	gi|257053431|ref|YP_003131264.1|	-	0.076	12.9	8.2	1.3	8.9	2.6	2.6	2	1	0	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
TF_Zn_Ribbon	PF08271.12	gi|257053431|ref|YP_003131264.1|	-	0.11	12.0	18.4	4.5	6.9	4.7	4.3	3	2	0	3	3	3	0	TFIIB	zinc-binding
Zn-ribbon_8	PF09723.10	gi|257053431|ref|YP_003131264.1|	-	0.17	12.0	16.6	6.2	7.0	1.0	3.7	2	2	0	3	3	3	0	Zinc	ribbon	domain
Nudix_N_2	PF14803.6	gi|257053431|ref|YP_003131264.1|	-	0.17	11.8	15.6	12	5.9	5.0	4.1	2	2	1	3	3	3	0	Nudix	N-terminal
PriA_CRR	PF18319.1	gi|257053431|ref|YP_003131264.1|	-	0.18	11.8	0.3	0.18	11.8	0.3	2.8	3	1	0	3	3	3	0	PriA	DNA	helicase	Cys-rich	region	(CRR)	domain
zf-piccolo	PF05715.13	gi|257053431|ref|YP_003131264.1|	-	0.27	11.4	9.1	4.7	7.4	1.4	3.5	1	1	2	3	3	3	0	Piccolo	Zn-finger
UPF0547	PF10571.9	gi|257053431|ref|YP_003131264.1|	-	0.29	11.3	18.3	1.4	9.1	1.0	4.1	4	0	0	4	4	4	0	Uncharacterised	protein	family	UPF0547
zf_C2H2_13	PF18508.1	gi|257053431|ref|YP_003131264.1|	-	0.33	10.6	6.6	11	5.8	0.0	4.0	4	0	0	4	4	4	0	Zinc	finger	domain
zf-ACC	PF17848.1	gi|257053431|ref|YP_003131264.1|	-	0.66	10.1	15.7	2.8	8.1	0.3	4.2	4	0	0	4	4	4	0	Acetyl-coA	carboxylase	zinc	finger	domain
IBR	PF01485.21	gi|257053431|ref|YP_003131264.1|	-	0.95	9.7	10.2	5	7.4	2.0	3.0	2	1	0	2	2	2	0	IBR	domain,	a	half	RING-finger	domain
zf-RRN7	PF11781.8	gi|257053431|ref|YP_003131264.1|	-	1.4	8.7	11.8	24	4.7	0.3	4.1	4	0	0	4	4	4	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
Zn_ribbon_recom	PF13408.6	gi|257053431|ref|YP_003131264.1|	-	1.5	9.4	13.3	14	6.3	0.2	3.8	3	1	0	3	3	3	0	Recombinase	zinc	beta	ribbon	domain
GATA	PF00320.27	gi|257053431|ref|YP_003131264.1|	-	1.8	8.2	11.1	4.3	7.0	1.2	3.7	3	1	0	3	3	3	0	GATA	zinc	finger
A2L_zn_ribbon	PF08792.10	gi|257053431|ref|YP_003131264.1|	-	1.9	8.3	17.7	17	5.2	0.1	4.3	3	1	0	3	3	3	0	A2L	zinc	ribbon	domain
zinc_ribbon_4	PF13717.6	gi|257053431|ref|YP_003131264.1|	-	2.1	8.3	12.5	0.64	10.0	0.6	3.7	3	1	1	4	4	4	0	zinc-ribbon	domain
zf-IS66	PF13005.7	gi|257053431|ref|YP_003131264.1|	-	2.1	8.8	11.2	11	6.5	2.8	3.8	3	1	0	3	3	3	0	zinc-finger	binding	domain	of	transposase	IS66
DUF1451	PF07295.11	gi|257053431|ref|YP_003131264.1|	-	2.4	8.2	14.1	2.4	8.2	3.6	3.2	1	1	1	2	2	2	0	Zinc-ribbon	containing	domain
zinc-ribbon_6	PF10005.9	gi|257053431|ref|YP_003131264.1|	-	2.8	8.7	8.1	11	6.8	0.8	3.0	2	1	0	3	3	3	0	zinc-ribbon	domain
Lar_restr_allev	PF14354.6	gi|257053431|ref|YP_003131264.1|	-	3.1	8.2	12.6	18	5.8	2.2	3.3	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
zf-CRD	PF17979.1	gi|257053431|ref|YP_003131264.1|	-	4.1	7.5	7.7	6.2	6.9	0.0	2.4	2	1	1	3	3	2	0	Cysteine	rich	domain	with	multizinc	binding	regions
XPA_N	PF01286.18	gi|257053431|ref|YP_003131264.1|	-	6.3	6.9	14.3	26	5.0	0.2	4.1	4	0	0	4	4	4	0	XPA	protein	N-terminal
DUF4428	PF14471.6	gi|257053431|ref|YP_003131264.1|	-	7.2	6.6	8.5	8.5	6.4	0.1	2.7	3	0	0	3	3	2	0	Domain	of	unknown	function	(DUF4428)
zinc_ribbon_15	PF17032.5	gi|257053431|ref|YP_003131264.1|	-	8.5	7.2	11.5	3.2	8.6	1.1	2.9	1	1	2	3	3	3	0	zinc-ribbon	family
NIF3	PF01784.18	gi|257053432|ref|YP_003131265.1|	-	0.082	12.5	0.0	0.094	12.3	0.0	1.1	1	0	0	1	1	1	0	NIF3	(NGG1p	interacting	factor	3)
DUF4327	PF14217.6	gi|257053432|ref|YP_003131265.1|	-	0.16	12.2	0.0	0.61	10.3	0.0	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4327)
RHH_1	PF01402.21	gi|257053433|ref|YP_003131266.1|	-	2e-07	30.7	0.6	2e-07	30.7	0.6	2.4	3	0	0	3	3	3	1	Ribbon-helix-helix	protein,	copG	family
VapB_antitoxin	PF09957.9	gi|257053433|ref|YP_003131266.1|	-	1.3e-05	25.0	4.1	0.0001	22.1	1.0	3.0	2	1	1	3	3	3	1	Bacterial	antitoxin	of	type	II	TA	system,	VapB
DUF1160	PF06648.11	gi|257053433|ref|YP_003131266.1|	-	0.0043	17.0	0.0	0.0052	16.8	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1160)
PSK_trans_fac	PF07704.11	gi|257053433|ref|YP_003131266.1|	-	0.053	14.3	6.0	0.16	12.8	6.0	1.8	1	1	0	1	1	1	0	Rv0623-like	transcription	factor
ABC2_membrane_4	PF12730.7	gi|257053434|ref|YP_003131267.1|	-	0.072	13.1	6.0	0.042	13.8	4.2	1.6	1	1	0	1	1	1	0	ABC-2	family	transporter	protein
DUF3533	PF12051.8	gi|257053434|ref|YP_003131267.1|	-	0.89	8.4	3.8	1.1	8.1	3.8	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3533)
ABC2_membrane_3	PF12698.7	gi|257053434|ref|YP_003131267.1|	-	5.5	6.0	11.1	7.1	5.6	10.5	1.6	1	1	0	1	1	1	0	ABC-2	family	transporter	protein
ABC_tran	PF00005.27	gi|257053435|ref|YP_003131268.1|	-	2.7e-26	92.7	0.0	4.1e-26	92.1	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|257053435|ref|YP_003131268.1|	-	1.8e-17	64.1	0.0	4.6e-11	43.1	0.0	2.1	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_30	PF13604.6	gi|257053435|ref|YP_003131268.1|	-	4.5e-05	23.3	0.0	8.8e-05	22.3	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_23	PF13476.6	gi|257053435|ref|YP_003131268.1|	-	0.0026	18.3	0.0	0.0035	17.9	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|257053435|ref|YP_003131268.1|	-	0.0031	17.8	0.0	0.0049	17.1	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_24	PF13479.6	gi|257053435|ref|YP_003131268.1|	-	0.019	14.7	0.1	1.4	8.6	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_16	PF13191.6	gi|257053435|ref|YP_003131268.1|	-	0.033	14.6	0.2	0.069	13.5	0.2	1.7	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_27	PF13514.6	gi|257053435|ref|YP_003131268.1|	-	0.12	12.0	0.0	0.32	10.6	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
Mg_chelatase	PF01078.21	gi|257053435|ref|YP_003131268.1|	-	0.14	11.6	0.0	0.23	10.8	0.0	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
FAD_binding_1	PF00667.20	gi|257053435|ref|YP_003131268.1|	-	0.14	11.7	0.0	0.27	10.8	0.0	1.4	2	0	0	2	2	2	0	FAD	binding	domain
Zeta_toxin	PF06414.12	gi|257053435|ref|YP_003131268.1|	-	0.17	11.1	0.0	0.57	9.4	0.0	1.8	2	0	0	2	2	2	0	Zeta	toxin
SMC_N	PF02463.19	gi|257053435|ref|YP_003131268.1|	-	0.23	10.9	0.0	3.1	7.2	0.0	2.0	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
HTH_3	PF01381.22	gi|257053436|ref|YP_003131269.1|	-	3.3e-17	62.3	0.0	3.7e-17	62.1	0.0	1.0	1	0	0	1	1	1	1	Helix-turn-helix
HTH_31	PF13560.6	gi|257053436|ref|YP_003131269.1|	-	4.5e-10	39.7	0.1	5.1e-10	39.5	0.1	1.0	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_19	PF12844.7	gi|257053436|ref|YP_003131269.1|	-	2.1e-09	37.3	0.0	2.7e-09	36.9	0.0	1.0	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|257053436|ref|YP_003131269.1|	-	6e-05	22.5	0.0	8.7e-05	22.0	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|257053436|ref|YP_003131269.1|	-	0.00062	19.5	0.1	0.0011	18.7	0.1	1.5	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|257053436|ref|YP_003131269.1|	-	0.0017	18.3	0.0	0.0027	17.6	0.0	1.4	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
Sigma70_r4	PF04545.16	gi|257053436|ref|YP_003131269.1|	-	0.0048	16.4	0.1	0.0073	15.8	0.1	1.3	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_11	PF08279.12	gi|257053436|ref|YP_003131269.1|	-	0.0076	16.2	0.2	0.011	15.6	0.2	1.2	1	0	0	1	1	1	1	HTH	domain
YdaS_antitoxin	PF15943.5	gi|257053436|ref|YP_003131269.1|	-	0.0098	15.7	0.0	0.012	15.5	0.0	1.2	1	0	0	1	1	1	1	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
HTH_23	PF13384.6	gi|257053436|ref|YP_003131269.1|	-	0.019	14.8	0.1	0.048	13.5	0.0	1.6	2	0	0	2	2	2	0	Homeodomain-like	domain
HTH_28	PF13518.6	gi|257053436|ref|YP_003131269.1|	-	0.019	15.0	0.1	0.044	13.9	0.0	1.6	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_26	PF13443.6	gi|257053436|ref|YP_003131269.1|	-	0.021	15.3	0.0	0.024	15.1	0.0	1.1	1	0	0	1	1	1	0	Cro/C1-type	HTH	DNA-binding	domain
HTH_38	PF13936.6	gi|257053436|ref|YP_003131269.1|	-	0.026	14.3	0.1	0.09	12.5	0.0	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_25	PF13413.6	gi|257053436|ref|YP_003131269.1|	-	0.031	14.1	0.1	0.043	13.7	0.1	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|257053436|ref|YP_003131269.1|	-	0.031	14.2	0.0	0.05	13.5	0.0	1.3	1	0	0	1	1	1	0	MarR	family
HTH_37	PF13744.6	gi|257053436|ref|YP_003131269.1|	-	0.054	13.5	0.1	0.095	12.7	0.0	1.4	1	1	1	2	2	2	0	Helix-turn-helix	domain
MerR	PF00376.23	gi|257053436|ref|YP_003131269.1|	-	0.057	13.2	0.0	0.11	12.3	0.0	1.4	1	0	0	1	1	1	0	MerR	family	regulatory	protein
HTH_7	PF02796.15	gi|257053436|ref|YP_003131269.1|	-	0.1	12.7	0.2	0.27	11.3	0.1	1.7	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	resolvase
DUF3040	PF11239.8	gi|257053437|ref|YP_003131270.1|	-	0.036	14.4	6.1	0.26	11.6	0.9	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3040)
DUF1206	PF06724.11	gi|257053437|ref|YP_003131270.1|	-	8.3	6.6	14.7	0.094	12.8	4.2	3.0	3	1	0	3	3	3	0	Domain	of	Unknown	Function	(DUF1206)
Zip	PF02535.22	gi|257053438|ref|YP_003131271.1|	-	0.00017	21.0	13.3	0.0017	17.7	5.5	2.3	2	0	0	2	2	2	2	ZIP	Zinc	transporter
BaxI_1	PF12811.7	gi|257053438|ref|YP_003131271.1|	-	2.9	7.4	12.9	0.7	9.4	8.0	2.1	1	1	1	2	2	2	0	Bax	inhibitor	1	like
Amino_oxidase	PF01593.24	gi|257053439|ref|YP_003131272.1|	-	3.3e-36	125.5	0.0	4.2e-36	125.2	0.0	1.1	1	0	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.6	gi|257053439|ref|YP_003131272.1|	-	2.9e-16	59.4	0.1	7.9e-16	58.0	0.1	1.8	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|257053439|ref|YP_003131272.1|	-	6.8e-13	48.9	1.5	1.6e-07	31.3	0.0	2.9	2	1	0	2	2	2	2	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.14	gi|257053439|ref|YP_003131272.1|	-	1.1e-08	34.7	2.4	4.6e-06	26.1	0.2	2.4	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|257053439|ref|YP_003131272.1|	-	1.7e-08	34.1	0.6	0.0055	16.0	0.6	2.5	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.7	gi|257053439|ref|YP_003131272.1|	-	2.4e-07	30.5	0.0	4e-07	29.7	0.0	1.4	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|257053439|ref|YP_003131272.1|	-	3.4e-07	29.3	1.7	0.0018	17.1	0.9	2.3	2	0	0	2	2	2	2	HI0933-like	protein
Pyr_redox	PF00070.27	gi|257053439|ref|YP_003131272.1|	-	5.2e-07	30.1	4.6	0.00014	22.3	0.8	2.8	3	0	0	3	3	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|257053439|ref|YP_003131272.1|	-	6.2e-07	28.8	3.1	1.1e-06	28.0	2.5	1.6	2	0	0	2	2	2	1	FAD	binding	domain
FAD_binding_3	PF01494.19	gi|257053439|ref|YP_003131272.1|	-	7.2e-07	28.8	0.7	2.6e-06	26.9	0.2	2.0	2	0	0	2	2	2	1	FAD	binding	domain
Thi4	PF01946.17	gi|257053439|ref|YP_003131272.1|	-	2.5e-05	23.7	0.7	8.2e-05	22.0	0.2	2.0	2	0	0	2	2	2	1	Thi4	family
NAD_binding_9	PF13454.6	gi|257053439|ref|YP_003131272.1|	-	6.3e-05	23.0	4.9	0.0048	16.9	0.3	2.8	3	0	0	3	3	3	2	FAD-NAD(P)-binding
GIDA	PF01134.22	gi|257053439|ref|YP_003131272.1|	-	0.0037	16.4	2.0	0.0065	15.6	2.0	1.3	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
MCRA	PF06100.11	gi|257053439|ref|YP_003131272.1|	-	0.0055	15.6	0.0	0.014	14.3	0.0	1.6	2	0	0	2	2	2	1	MCRA	family
AlaDh_PNT_C	PF01262.21	gi|257053439|ref|YP_003131272.1|	-	0.027	13.8	3.7	0.081	12.2	0.3	2.5	3	0	0	3	3	3	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Trp_halogenase	PF04820.14	gi|257053439|ref|YP_003131272.1|	-	0.039	12.8	0.9	0.08	11.8	0.9	1.5	1	0	0	1	1	1	0	Tryptophan	halogenase
NAD_binding_7	PF13241.6	gi|257053439|ref|YP_003131272.1|	-	0.047	14.1	0.1	0.11	12.9	0.1	1.8	1	1	0	1	1	1	0	Putative	NAD(P)-binding
3HCDH_N	PF02737.18	gi|257053439|ref|YP_003131272.1|	-	0.052	13.4	0.4	0.096	12.6	0.4	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Lycopene_cycl	PF05834.12	gi|257053439|ref|YP_003131272.1|	-	0.14	11.2	0.9	0.21	10.6	0.9	1.2	1	0	0	1	1	1	0	Lycopene	cyclase	protein
UDPG_MGDP_dh_N	PF03721.14	gi|257053439|ref|YP_003131272.1|	-	0.22	11.1	1.4	0.38	10.3	1.4	1.3	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
UbiA	PF01040.18	gi|257053440|ref|YP_003131273.1|	-	1.2e-28	100.2	17.1	1.7e-28	99.7	17.1	1.3	1	1	0	1	1	1	1	UbiA	prenyltransferase	family
DUF805	PF05656.14	gi|257053440|ref|YP_003131273.1|	-	1.5	9.2	8.2	6.9	7.1	0.1	3.5	2	2	1	3	3	3	0	Protein	of	unknown	function	(DUF805)
Caroten_synth	PF04240.12	gi|257053441|ref|YP_003131274.1|	-	8.6e-61	205.4	16.9	1.2e-60	205.0	16.9	1.2	1	0	0	1	1	1	1	Carotenoid	biosynthesis	protein
DUF1318	PF07027.12	gi|257053442|ref|YP_003131275.1|	-	0.073	13.5	0.1	0.11	12.9	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1318)
COX15-CtaA	PF02628.15	gi|257053442|ref|YP_003131275.1|	-	0.38	9.8	0.2	0.47	9.5	0.2	1.1	1	0	0	1	1	1	0	Cytochrome	oxidase	assembly	protein
PIN	PF01850.21	gi|257053443|ref|YP_003131276.1|	-	0.1	13.1	0.1	0.15	12.5	0.1	1.2	1	0	0	1	1	1	0	PIN	domain
DUF1462	PF07315.11	gi|257053443|ref|YP_003131276.1|	-	0.12	12.7	0.0	0.35	11.2	0.0	1.7	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1462)
Nup54	PF13874.6	gi|257053444|ref|YP_003131277.1|	-	0.084	13.0	0.7	0.22	11.6	0.5	1.7	1	1	1	2	2	2	0	Nucleoporin	complex	subunit	54
ApoC-I	PF04691.12	gi|257053444|ref|YP_003131277.1|	-	0.097	12.6	0.0	0.21	11.5	0.0	1.5	1	0	0	1	1	1	0	Apolipoprotein	C-I	(ApoC-1)
Prominin	PF05478.11	gi|257053444|ref|YP_003131277.1|	-	0.15	10.0	0.0	0.16	9.9	0.0	1.0	1	0	0	1	1	1	0	Prominin
DUF4398	PF14346.6	gi|257053444|ref|YP_003131277.1|	-	0.31	11.7	7.3	0.36	11.5	2.4	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4398)
DUF4404	PF14357.6	gi|257053444|ref|YP_003131277.1|	-	0.39	11.4	4.2	14	6.4	0.5	2.2	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4404)
DUF3646	PF12362.8	gi|257053445|ref|YP_003131278.1|	-	0.014	15.8	0.0	0.02	15.2	0.0	1.3	1	0	0	1	1	1	0	DNA	polymerase	III	gamma	and	tau	subunits	C	terminal
SRAP	PF02586.14	gi|257053446|ref|YP_003131279.1|	-	3.4e-64	216.4	0.0	3.9e-64	216.2	0.0	1.0	1	0	0	1	1	1	1	SOS	response	associated	peptidase	(SRAP)
HAD	PF12710.7	gi|257053447|ref|YP_003131280.1|	-	7.4e-14	52.6	2.1	1.8e-13	51.3	1.1	1.9	1	1	1	2	2	2	1	haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|257053447|ref|YP_003131280.1|	-	2.9e-10	40.8	0.2	4.8e-10	40.1	0.2	1.3	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.12	gi|257053447|ref|YP_003131280.1|	-	0.043	13.6	0.1	0.24	11.1	0.0	2.1	3	0	0	3	3	3	0	haloacid	dehalogenase-like	hydrolase
FR47	PF08445.10	gi|257053447|ref|YP_003131280.1|	-	0.074	13.0	0.1	0.15	12.0	0.1	1.5	1	0	0	1	1	1	0	FR47-like	protein
MCPsignal	PF00015.21	gi|257053448|ref|YP_003131281.1|	-	1.7e-39	135.4	23.6	1.7e-39	135.4	23.6	5.4	2	1	4	6	6	6	3	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
HAMP	PF00672.25	gi|257053448|ref|YP_003131281.1|	-	8.5e-06	26.1	24.3	7.9e-05	23.0	0.3	6.9	6	1	1	7	7	7	2	HAMP	domain
dCache_1	PF02743.18	gi|257053448|ref|YP_003131281.1|	-	2.1e-05	24.4	2.5	2.1e-05	24.4	2.5	4.9	3	3	2	5	5	5	1	Cache	domain
Baculo_11_kDa	PF06143.11	gi|257053448|ref|YP_003131281.1|	-	0.021	14.4	0.0	0.063	12.9	0.0	1.8	1	0	0	1	1	1	0	Baculovirus	11	kDa	family
IL10	PF00726.17	gi|257053448|ref|YP_003131281.1|	-	0.052	13.1	0.2	0.41	10.1	0.0	2.5	2	1	1	3	3	3	0	Interleukin	10
HalX	PF08663.10	gi|257053448|ref|YP_003131281.1|	-	0.079	13.3	0.3	0.079	13.3	0.3	8.1	7	3	4	11	11	11	0	HalX	domain
Syntaxin_2	PF14523.6	gi|257053448|ref|YP_003131281.1|	-	0.089	13.2	20.1	6.8	7.1	1.3	5.9	4	1	1	5	5	5	0	Syntaxin-like	protein
DUF948	PF06103.11	gi|257053448|ref|YP_003131281.1|	-	0.091	13.0	52.8	0.08	13.2	2.0	8.2	2	1	5	7	7	7	0	Bacterial	protein	of	unknown	function	(DUF948)
DUF4083	PF13314.6	gi|257053448|ref|YP_003131281.1|	-	0.19	11.7	3.5	0.24	11.4	0.2	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4083)
DUF2779	PF11074.8	gi|257053448|ref|YP_003131281.1|	-	0.53	10.8	6.8	1.4	9.4	0.1	3.8	5	0	0	5	5	5	0	Domain	of	unknown	function(DUF2779)
DUF2203	PF09969.9	gi|257053448|ref|YP_003131281.1|	-	0.58	10.9	37.6	1.2	9.8	3.1	5.7	3	1	3	6	6	6	0	Uncharacterized	conserved	protein	(DUF2203)
Prominin	PF05478.11	gi|257053448|ref|YP_003131281.1|	-	0.62	7.9	26.2	0.17	9.8	8.9	3.6	2	1	3	5	5	5	0	Prominin
SnoaL_2	PF12680.7	gi|257053448|ref|YP_003131281.1|	-	0.93	10.2	4.9	12	6.6	0.1	3.7	2	1	1	3	3	3	0	SnoaL-like	domain
Spc7	PF08317.11	gi|257053448|ref|YP_003131281.1|	-	1.2	8.0	44.2	0.16	10.8	14.9	3.7	1	1	3	4	4	4	0	Spc7	kinetochore	protein
S_4TM	PF18159.1	gi|257053448|ref|YP_003131281.1|	-	6.1	6.1	7.8	1.6	8.0	0.1	3.5	3	1	1	4	4	4	0	SMODS-associating	4TM	effector	domain
Mod_r	PF07200.13	gi|257053448|ref|YP_003131281.1|	-	6.8	6.8	38.7	5.2	7.2	0.2	5.9	3	2	1	5	5	5	0	Modifier	of	rudimentary	(Mod(r))	protein
NPV_P10	PF05531.12	gi|257053448|ref|YP_003131281.1|	-	8.7	6.9	36.6	0.26	11.8	2.3	6.9	3	2	4	7	7	7	0	Nucleopolyhedrovirus	P10	protein
Ribosom_S12_S23	PF00164.25	gi|257053449|ref|YP_003131282.1|	-	6e-50	167.6	0.3	7.5e-50	167.3	0.3	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S12/S23
Ribosomal_S7	PF00177.21	gi|257053450|ref|YP_003131283.1|	-	1.9e-36	125.0	4.7	2.4e-36	124.6	4.7	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S7p/S5e
PBECR3	PF18812.1	gi|257053450|ref|YP_003131283.1|	-	0.03	14.3	0.1	0.047	13.6	0.1	1.4	1	0	0	1	1	1	0	phage-Barnase-EndoU-ColicinE5/D-RelE	like	nuclease3
Ribosomal_L15e	PF00827.17	gi|257053451|ref|YP_003131284.1|	-	1.8e-83	279.0	7.7	2e-83	278.8	7.7	1.0	1	0	0	1	1	1	1	Ribosomal	L15
AlkA_N	PF06029.11	gi|257053451|ref|YP_003131284.1|	-	0.079	13.2	0.7	0.12	12.7	0.7	1.3	1	0	0	1	1	1	0	AlkA	N-terminal	domain
YjbF	PF11102.8	gi|257053451|ref|YP_003131284.1|	-	0.086	12.6	1.4	1.1	9.0	1.4	2.1	1	1	0	1	1	1	0	Group	4	capsule	polysaccharide	lipoprotein	gfcB,	YjbF
DUF4110	PF13422.6	gi|257053451|ref|YP_003131284.1|	-	1.1	9.3	6.2	0.16	12.1	0.7	2.3	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4110)
Regulator_TrmB	PF11495.8	gi|257053452|ref|YP_003131285.1|	-	4.8e-43	147.0	0.0	5.9e-43	146.7	0.0	1.1	1	0	0	1	1	1	1	Archaeal	transcriptional	regulator	TrmB
TrmB	PF01978.19	gi|257053452|ref|YP_003131285.1|	-	4.9e-14	52.0	0.0	8.3e-14	51.2	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|257053452|ref|YP_003131285.1|	-	0.0058	16.5	0.0	0.016	15.1	0.0	1.8	1	1	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.10	gi|257053452|ref|YP_003131285.1|	-	0.088	12.6	0.0	0.21	11.4	0.0	1.6	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
PadR	PF03551.14	gi|257053452|ref|YP_003131285.1|	-	0.091	12.7	0.0	0.2	11.6	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
Cellulase	PF00150.18	gi|257053453|ref|YP_003131286.1|	-	2.5e-32	112.4	2.0	3.5e-32	112.0	2.0	1.2	1	0	0	1	1	1	1	Cellulase	(glycosyl	hydrolase	family	5)
fn3	PF00041.21	gi|257053453|ref|YP_003131286.1|	-	5.1e-15	55.6	0.6	1.1e-14	54.5	0.6	1.6	1	0	0	1	1	1	1	Fibronectin	type	III	domain
Pur_ac_phosph_N	PF16656.5	gi|257053453|ref|YP_003131286.1|	-	0.0056	17.2	2.5	0.046	14.3	2.5	2.3	1	1	0	1	1	1	1	Purple	acid	Phosphatase,	N-terminal	domain
DUF4959	PF16323.5	gi|257053453|ref|YP_003131286.1|	-	0.024	15.0	0.8	0.049	13.9	0.8	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4959)
DUF4249	PF14054.6	gi|257053453|ref|YP_003131286.1|	-	0.027	14.1	1.9	0.043	13.5	1.9	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4249)
TAT_signal	PF10518.9	gi|257053453|ref|YP_003131286.1|	-	0.065	13.1	6.5	0.22	11.5	6.5	1.9	1	1	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF2369	PF10179.9	gi|257053453|ref|YP_003131286.1|	-	0.24	11.8	0.0	0.45	10.9	0.0	1.4	1	0	0	1	1	1	0	Uncharacterised	conserved	protein	(DUF2369)
fn3	PF00041.21	gi|257053454|ref|YP_003131287.1|	-	3.7e-27	94.5	9.8	1.7e-14	53.9	1.0	3.3	3	0	0	3	3	3	2	Fibronectin	type	III	domain
Cellulase	PF00150.18	gi|257053454|ref|YP_003131287.1|	-	1.3e-19	70.7	7.8	3.4e-19	69.3	7.8	1.8	1	1	0	1	1	1	1	Cellulase	(glycosyl	hydrolase	family	5)
PKD	PF00801.20	gi|257053454|ref|YP_003131287.1|	-	4.4e-07	29.7	3.9	4.4e-07	29.7	3.9	3.5	3	2	0	3	3	3	1	PKD	domain
fn3_2	PF16893.5	gi|257053454|ref|YP_003131287.1|	-	1.1e-06	28.7	0.1	0.012	15.7	0.1	2.3	2	0	0	2	2	2	2	Fibronectin	type	III	domain
DUF4959	PF16323.5	gi|257053454|ref|YP_003131287.1|	-	5.6e-05	23.4	9.7	0.085	13.2	1.0	3.5	2	1	1	3	3	3	2	Domain	of	unknown	function	(DUF4959)
TAT_signal	PF10518.9	gi|257053454|ref|YP_003131287.1|	-	0.00062	19.5	1.7	0.00062	19.5	1.7	2.1	2	0	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Pur_ac_phosph_N	PF16656.5	gi|257053454|ref|YP_003131287.1|	-	0.0007	20.1	19.4	0.0059	17.2	3.5	4.5	3	2	0	3	3	3	2	Purple	acid	Phosphatase,	N-terminal	domain
DUF4998	PF16389.5	gi|257053454|ref|YP_003131287.1|	-	0.011	15.3	1.0	0.26	10.9	0.1	2.5	2	1	1	3	3	3	0	Domain	of	unknown	function
Big_3_4	PF13754.6	gi|257053454|ref|YP_003131287.1|	-	0.014	15.2	0.2	12	5.7	0.0	3.8	3	1	1	4	4	4	0	Domain	of	unknown	function
DUF2369	PF10179.9	gi|257053454|ref|YP_003131287.1|	-	0.018	15.4	0.0	2	8.9	0.0	2.5	2	0	0	2	2	2	0	Uncharacterised	conserved	protein	(DUF2369)
Arylsulfotran_N	PF17425.2	gi|257053454|ref|YP_003131287.1|	-	0.083	12.9	8.1	0.14	12.2	0.2	3.4	3	0	0	3	3	3	0	Arylsulfotransferase	Ig-like	domain
Y_Y_Y	PF07495.13	gi|257053454|ref|YP_003131287.1|	-	0.085	12.8	0.1	2.8	8.0	0.1	3.1	3	0	0	3	3	3	0	Y_Y_Y	domain
Big_6	PF17936.1	gi|257053454|ref|YP_003131287.1|	-	0.16	12.3	22.2	3.2	8.1	6.4	4.7	3	2	0	3	3	3	0	Bacterial	Ig	domain
Big_3_3	PF13750.6	gi|257053454|ref|YP_003131287.1|	-	0.21	11.3	5.6	9.1	5.9	0.1	3.7	3	0	0	3	3	3	0	Bacterial	Ig-like	domain	(group	3)
Cadherin	PF00028.17	gi|257053454|ref|YP_003131287.1|	-	0.28	11.6	1.6	12	6.4	0.2	3.2	3	0	0	3	3	3	0	Cadherin	domain
MG2	PF01835.19	gi|257053454|ref|YP_003131287.1|	-	0.42	11.1	1.8	1.8	9.1	0.3	2.6	2	0	0	2	2	2	0	MG2	domain
Glyco_hydro_12	PF01670.16	gi|257053455|ref|YP_003131288.1|	-	1.1e-11	45.2	7.2	1.9e-11	44.3	7.2	1.4	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	12
TAT_signal	PF10518.9	gi|257053455|ref|YP_003131288.1|	-	0.35	10.8	3.0	0.76	9.7	3.0	1.6	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF3530	PF12048.8	gi|257053455|ref|YP_003131288.1|	-	7.1	6.0	6.5	12	5.2	6.5	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3530)
SASA	PF03629.18	gi|257053456|ref|YP_003131289.1|	-	7.9e-44	150.0	0.0	1e-43	149.6	0.0	1.1	1	0	0	1	1	1	1	Carbohydrate	esterase,	sialic	acid-specific	acetylesterase
TAT_signal	PF10518.9	gi|257053456|ref|YP_003131289.1|	-	6.9e-08	32.0	0.5	2.2e-07	30.4	0.5	1.9	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
PKD	PF00801.20	gi|257053456|ref|YP_003131289.1|	-	4.6e-07	29.6	5.5	4.6e-07	29.6	5.5	2.7	2	0	0	2	2	2	1	PKD	domain
CBM_5_12	PF02839.14	gi|257053456|ref|YP_003131289.1|	-	0.0024	18.3	1.4	0.017	15.7	1.4	2.6	1	0	0	1	1	1	1	Carbohydrate	binding	domain
UCR_Fe-S_N	PF10399.9	gi|257053456|ref|YP_003131289.1|	-	0.0032	16.8	0.4	0.0069	15.7	0.4	1.5	1	0	0	1	1	1	1	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
DUF5011	PF16403.5	gi|257053456|ref|YP_003131289.1|	-	0.086	13.0	0.2	0.26	11.4	0.2	1.8	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5011)
Glyco_hydro_10	PF00331.20	gi|257053457|ref|YP_003131290.1|	-	3.1e-33	115.3	3.7	4.9e-33	114.6	3.7	1.2	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	10
fn3	PF00041.21	gi|257053457|ref|YP_003131290.1|	-	1.1e-08	35.3	0.3	1.1e-08	35.3	0.3	2.2	2	0	0	2	2	2	1	Fibronectin	type	III	domain
DUF4959	PF16323.5	gi|257053457|ref|YP_003131290.1|	-	0.00068	19.9	1.7	0.0011	19.2	0.7	1.8	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4959)
TAT_signal	PF10518.9	gi|257053457|ref|YP_003131290.1|	-	0.0035	17.1	8.0	0.014	15.2	8.0	2.1	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
UCR_Fe-S_N	PF10399.9	gi|257053457|ref|YP_003131290.1|	-	0.068	12.5	2.9	0.18	11.2	2.9	1.7	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
Big_6	PF17936.1	gi|257053457|ref|YP_003131290.1|	-	7.7	6.9	24.5	7.7	6.9	7.3	4.3	3	1	1	4	4	4	0	Bacterial	Ig	domain
Glyco_hydro_10	PF00331.20	gi|257053458|ref|YP_003131291.1|	-	2.1e-34	119.1	5.7	3.1e-34	118.6	5.7	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	10
fn3	PF00041.21	gi|257053458|ref|YP_003131291.1|	-	3.5e-10	40.1	0.4	3.5e-10	40.1	0.4	2.5	2	0	0	2	2	2	1	Fibronectin	type	III	domain
PKD	PF00801.20	gi|257053458|ref|YP_003131291.1|	-	2e-09	37.2	19.3	4.8e-06	26.3	5.3	5.1	4	1	1	5	5	5	2	PKD	domain
BatD	PF13584.6	gi|257053458|ref|YP_003131291.1|	-	0.022	13.6	0.2	2.4	6.8	0.0	3.0	2	1	1	3	3	3	0	Oxygen	tolerance
DUF4959	PF16323.5	gi|257053458|ref|YP_003131291.1|	-	0.059	13.7	0.5	0.059	13.7	0.5	2.5	3	1	0	3	3	3	0	Domain	of	unknown	function	(DUF4959)
TAT_signal	PF10518.9	gi|257053458|ref|YP_003131291.1|	-	0.34	10.8	9.8	0.086	12.7	6.2	2.0	1	1	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
MG2	PF01835.19	gi|257053458|ref|YP_003131291.1|	-	0.59	10.6	9.1	2.7	8.5	0.1	4.5	4	1	0	4	4	4	0	MG2	domain
UCR_Fe-S_N	PF10399.9	gi|257053458|ref|YP_003131291.1|	-	0.64	9.4	3.0	2	7.8	3.0	1.9	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
PKD	PF00801.20	gi|257053459|ref|YP_003131292.1|	-	5.9e-16	58.1	17.8	5.1e-08	32.6	4.2	2.9	2	0	0	2	2	2	2	PKD	domain
MG2	PF01835.19	gi|257053459|ref|YP_003131292.1|	-	0.00011	22.6	1.4	0.57	10.7	0.2	2.5	2	0	0	2	2	2	2	MG2	domain
GbpA_2	PF18416.1	gi|257053459|ref|YP_003131292.1|	-	0.017	15.4	1.4	2.4	8.5	0.2	3.0	2	0	0	2	2	2	0	N-acetylglucosamine	binding	protein	domain	2
ChitinaseA_N	PF08329.10	gi|257053459|ref|YP_003131292.1|	-	0.018	14.7	0.1	1.9	8.1	0.1	2.6	2	0	0	2	2	2	0	Chitinase	A,	N-terminal	domain
DUF4625	PF15418.6	gi|257053459|ref|YP_003131292.1|	-	0.031	14.5	5.9	3.2	8.0	0.1	3.8	5	0	0	5	5	5	0	Domain	of	unknown	function	(DUF4625)
Isochorismatase	PF00857.20	gi|257053459|ref|YP_003131292.1|	-	0.064	13.4	0.0	3.1	8.0	0.0	2.9	2	1	0	2	2	2	0	Isochorismatase	family
Y_Y_Y	PF07495.13	gi|257053459|ref|YP_003131292.1|	-	0.081	12.9	0.1	20	5.2	0.0	2.5	2	0	0	2	2	2	0	Y_Y_Y	domain
Cadherin	PF00028.17	gi|257053459|ref|YP_003131292.1|	-	0.25	11.8	2.1	12	6.4	0.3	2.8	2	0	0	2	2	2	0	Cadherin	domain
DUF5011	PF16403.5	gi|257053459|ref|YP_003131292.1|	-	1.3	9.2	12.1	6.1	7.0	1.6	4.1	4	0	0	4	4	4	0	Domain	of	unknown	function	(DUF5011)
SoxZ	PF08770.11	gi|257053459|ref|YP_003131292.1|	-	2	8.2	5.2	36	4.2	0.1	3.8	4	0	0	4	4	4	0	Sulphur	oxidation	protein	SoxZ
He_PIG	PF05345.12	gi|257053459|ref|YP_003131292.1|	-	2.8	8.2	17.0	1.1	9.5	0.6	3.9	4	0	0	4	4	4	0	Putative	Ig	domain
Cellulase	PF00150.18	gi|257053460|ref|YP_003131293.1|	-	4.9e-27	95.1	0.4	1.3e-26	93.7	0.4	1.6	1	1	0	1	1	1	1	Cellulase	(glycosyl	hydrolase	family	5)
fn3	PF00041.21	gi|257053460|ref|YP_003131293.1|	-	1.6e-09	38.0	0.0	3.5e-09	36.9	0.0	1.6	1	0	0	1	1	1	1	Fibronectin	type	III	domain
TAT_signal	PF10518.9	gi|257053460|ref|YP_003131293.1|	-	0.0046	16.7	3.7	0.0046	16.7	3.7	2.9	1	1	1	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
fn3_2	PF16893.5	gi|257053460|ref|YP_003131293.1|	-	0.19	11.9	0.0	0.34	11.1	0.0	1.3	1	0	0	1	1	1	0	Fibronectin	type	III	domain
fn3	PF00041.21	gi|257053461|ref|YP_003131294.1|	-	2.1e-48	162.6	17.5	6.6e-12	45.6	0.1	5.7	5	0	0	5	5	5	5	Fibronectin	type	III	domain
Cellulase	PF00150.18	gi|257053461|ref|YP_003131294.1|	-	1.3e-37	129.8	1.3	2e-37	129.1	1.3	1.3	1	0	0	1	1	1	1	Cellulase	(glycosyl	hydrolase	family	5)
fn3_2	PF16893.5	gi|257053461|ref|YP_003131294.1|	-	3.6e-16	59.1	0.1	0.0014	18.8	0.1	5.1	5	0	0	5	5	5	3	Fibronectin	type	III	domain
DUF4959	PF16323.5	gi|257053461|ref|YP_003131294.1|	-	2e-13	50.6	14.7	0.00086	19.6	0.8	5.5	4	1	1	5	5	5	4	Domain	of	unknown	function	(DUF4959)
DUF2369	PF10179.9	gi|257053461|ref|YP_003131294.1|	-	2.2e-12	47.2	0.0	0.15	12.5	0.0	5.3	5	0	0	5	5	5	2	Uncharacterised	conserved	protein	(DUF2369)
DUF4998	PF16389.5	gi|257053461|ref|YP_003131294.1|	-	2.1e-06	27.4	4.3	0.01	15.5	0.0	4.3	3	1	1	4	4	4	2	Domain	of	unknown	function
Big_6	PF17936.1	gi|257053461|ref|YP_003131294.1|	-	1.4e-05	25.3	25.2	0.047	14.0	0.9	6.2	5	1	0	5	5	5	3	Bacterial	Ig	domain
Pur_ac_phosph_N	PF16656.5	gi|257053461|ref|YP_003131294.1|	-	0.00045	20.7	29.6	1.8	9.2	1.1	6.8	3	3	1	4	4	4	2	Purple	acid	Phosphatase,	N-terminal	domain
ChitinaseA_N	PF08329.10	gi|257053461|ref|YP_003131294.1|	-	0.00077	19.1	1.2	0.00077	19.1	1.2	4.9	3	1	2	5	5	5	2	Chitinase	A,	N-terminal	domain
Big_3_2	PF12245.8	gi|257053461|ref|YP_003131294.1|	-	0.0037	17.5	15.0	2.7	8.3	0.2	5.5	3	1	2	5	5	5	1	Bacterial	Ig-like	domain
TAT_signal	PF10518.9	gi|257053461|ref|YP_003131294.1|	-	0.0043	16.8	6.7	0.0043	16.8	6.7	2.0	1	1	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
CE2_N	PF17996.1	gi|257053461|ref|YP_003131294.1|	-	0.041	13.9	8.7	1.8	8.6	0.3	4.8	4	1	1	5	5	5	0	Carbohydrate	esterase	2	N-terminal
Big_3_3	PF13750.6	gi|257053461|ref|YP_003131294.1|	-	0.047	13.4	8.1	8.3	6.0	0.1	5.0	4	1	0	4	4	4	0	Bacterial	Ig-like	domain	(group	3)
Arylsulfotran_N	PF17425.2	gi|257053461|ref|YP_003131294.1|	-	0.056	13.5	16.4	0.13	12.3	0.1	5.4	6	0	0	6	6	6	0	Arylsulfotransferase	Ig-like	domain
UCR_Fe-S_N	PF10399.9	gi|257053461|ref|YP_003131294.1|	-	0.43	10.0	2.8	1.1	8.6	2.8	1.8	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
P5CR_dimer	PF14748.6	gi|257053461|ref|YP_003131294.1|	-	1.7	9.0	8.7	40	4.6	0.1	4.2	4	0	0	4	4	4	0	Pyrroline-5-carboxylate	reductase	dimerisation
fn3	PF00041.21	gi|257053462|ref|YP_003131295.1|	-	1e-24	86.6	1.5	1e-11	45.0	0.0	2.6	2	0	0	2	2	2	2	Fibronectin	type	III	domain
Cellulase	PF00150.18	gi|257053462|ref|YP_003131295.1|	-	2.7e-13	50.0	0.1	4.2e-13	49.4	0.1	1.2	1	0	0	1	1	1	1	Cellulase	(glycosyl	hydrolase	family	5)
PKD	PF00801.20	gi|257053462|ref|YP_003131295.1|	-	1.5e-09	37.6	0.5	1.5e-09	37.6	0.5	4.4	4	1	0	4	4	4	1	PKD	domain
DUF4959	PF16323.5	gi|257053462|ref|YP_003131295.1|	-	0.0033	17.7	2.5	0.64	10.4	0.6	2.6	1	1	1	2	2	2	2	Domain	of	unknown	function	(DUF4959)
DUF1349	PF07081.11	gi|257053462|ref|YP_003131295.1|	-	0.0087	15.8	0.0	0.043	13.5	0.0	2.1	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1349)
DUF2369	PF10179.9	gi|257053462|ref|YP_003131295.1|	-	0.012	15.9	0.0	4.1	7.8	0.0	2.3	2	0	0	2	2	2	0	Uncharacterised	conserved	protein	(DUF2369)
Pur_ac_phosph_N	PF16656.5	gi|257053462|ref|YP_003131295.1|	-	0.016	15.7	7.5	1.8	9.2	1.4	3.4	2	1	0	2	2	2	0	Purple	acid	Phosphatase,	N-terminal	domain
Glyco_hydro_2_C	PF02836.17	gi|257053462|ref|YP_003131295.1|	-	0.029	13.5	0.0	0.071	12.2	0.0	1.5	1	1	0	1	1	1	0	Glycosyl	hydrolases	family	2,	TIM	barrel	domain
ChitinaseA_N	PF08329.10	gi|257053462|ref|YP_003131295.1|	-	0.14	11.8	9.8	0.053	13.2	2.1	3.0	2	1	1	3	3	3	0	Chitinase	A,	N-terminal	domain
PKD	PF00801.20	gi|257053463|ref|YP_003131296.1|	-	1.5e-07	31.1	5.7	1.5e-07	31.1	5.7	2.8	2	0	0	2	2	2	1	PKD	domain
Pec_lyase_C	PF00544.19	gi|257053463|ref|YP_003131296.1|	-	0.00059	19.5	4.5	0.0041	16.7	4.5	2.2	1	1	0	1	1	1	1	Pectate	lyase
Beta_helix	PF13229.6	gi|257053463|ref|YP_003131296.1|	-	0.14	12.0	2.9	0.33	10.8	1.2	2.0	1	1	1	2	2	2	0	Right	handed	beta	helix	region
SnoaL_4	PF13577.6	gi|257053463|ref|YP_003131296.1|	-	0.17	12.0	1.5	0.37	10.9	0.1	2.3	3	0	0	3	3	3	0	SnoaL-like	domain
fn3	PF00041.21	gi|257053464|ref|YP_003131297.1|	-	1.7e-27	95.6	8.6	1.4e-10	41.4	0.1	4.2	4	0	0	4	4	4	3	Fibronectin	type	III	domain
Cellulase	PF00150.18	gi|257053464|ref|YP_003131297.1|	-	1.5e-25	90.2	2.5	4.3e-25	88.7	2.5	1.7	1	1	0	1	1	1	1	Cellulase	(glycosyl	hydrolase	family	5)
CBM_6	PF03422.15	gi|257053464|ref|YP_003131297.1|	-	3e-20	72.8	5.7	7.7e-20	71.5	3.0	3.1	2	0	0	2	2	2	1	Carbohydrate	binding	module	(family	6)
DUF5010_C	PF18099.1	gi|257053464|ref|YP_003131297.1|	-	3.9e-13	49.5	1.7	1.5e-12	47.6	1.7	2.1	1	0	0	1	1	1	1	DUF5010	C-terminal	domain
fn3_2	PF16893.5	gi|257053464|ref|YP_003131297.1|	-	8.8e-08	32.2	0.0	0.27	11.4	0.0	3.3	3	0	0	3	3	3	3	Fibronectin	type	III	domain
DUF4959	PF16323.5	gi|257053464|ref|YP_003131297.1|	-	8.8e-05	22.8	4.9	0.22	11.9	0.1	3.5	3	0	0	3	3	3	2	Domain	of	unknown	function	(DUF4959)
DUF2369	PF10179.9	gi|257053464|ref|YP_003131297.1|	-	0.0002	21.7	0.0	5.1	7.6	0.0	3.3	3	0	0	3	3	3	1	Uncharacterised	conserved	protein	(DUF2369)
Big_3_2	PF12245.8	gi|257053464|ref|YP_003131297.1|	-	0.00042	20.6	6.8	3	8.1	0.1	4.4	3	1	0	3	3	3	2	Bacterial	Ig-like	domain
GH115_C	PF17829.1	gi|257053464|ref|YP_003131297.1|	-	0.064	13.1	1.5	0.14	12.0	0.1	2.2	2	0	0	2	2	2	0	Gylcosyl	hydrolase	family	115	C-terminal	domain
Pur_ac_phosph_N	PF16656.5	gi|257053464|ref|YP_003131297.1|	-	0.13	12.9	11.5	15	6.2	1.5	4.6	3	2	0	3	3	3	0	Purple	acid	Phosphatase,	N-terminal	domain
Big_6	PF17936.1	gi|257053464|ref|YP_003131297.1|	-	0.23	11.8	23.8	2.3	8.6	0.3	5.0	4	0	0	4	4	4	0	Bacterial	Ig	domain
Big_3_3	PF13750.6	gi|257053464|ref|YP_003131297.1|	-	0.39	10.4	4.0	13	5.4	0.1	3.6	3	0	0	3	3	3	0	Bacterial	Ig-like	domain	(group	3)
Cadherin	PF00028.17	gi|257053464|ref|YP_003131297.1|	-	2.1	8.9	4.4	1.1e+02	3.3	0.1	4.4	4	1	0	4	4	4	0	Cadherin	domain
Glyco_hydro_9	PF00759.19	gi|257053465|ref|YP_003131298.1|	-	1.9e-115	386.6	15.2	2.6e-115	386.2	15.2	1.2	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	9
CBM_3	PF00942.18	gi|257053465|ref|YP_003131298.1|	-	2.7e-13	50.2	0.0	9.2e-13	48.4	0.0	2.0	1	0	0	1	1	1	1	Cellulose	binding	domain
fn3	PF00041.21	gi|257053465|ref|YP_003131298.1|	-	2.4e-11	43.8	0.1	9.3e-11	41.9	0.1	2.1	1	0	0	1	1	1	1	Fibronectin	type	III	domain
DUF4959	PF16323.5	gi|257053465|ref|YP_003131298.1|	-	0.019	15.3	0.4	0.04	14.2	0.4	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4959)
TAT_signal	PF10518.9	gi|257053466|ref|YP_003131299.1|	-	0.016	15.0	0.3	0.028	14.3	0.3	1.4	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF1830	PF08865.11	gi|257053466|ref|YP_003131299.1|	-	0.21	11.6	0.0	12	6.0	0.0	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1830)
RIO1	PF01163.22	gi|257053467|ref|YP_003131300.1|	-	1.8e-47	161.4	0.2	2.3e-47	161.0	0.2	1.1	1	0	0	1	1	1	1	RIO1	family
Rio2_N	PF09202.11	gi|257053467|ref|YP_003131300.1|	-	4.6e-28	97.3	0.0	9.7e-28	96.2	0.0	1.6	1	0	0	1	1	1	1	Rio2,	N-terminal
APH	PF01636.23	gi|257053467|ref|YP_003131300.1|	-	8.8e-05	22.5	1.1	0.094	12.6	0.0	2.5	1	1	1	2	2	2	2	Phosphotransferase	enzyme	family
Pkinase	PF00069.25	gi|257053467|ref|YP_003131300.1|	-	0.0012	18.3	0.0	0.0018	17.7	0.0	1.2	1	0	0	1	1	1	1	Protein	kinase	domain
AP_endonuc_2	PF01261.24	gi|257053468|ref|YP_003131301.1|	-	4.1e-26	91.7	0.6	6.6e-26	91.1	0.6	1.3	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
Methyltransf_11	PF08241.12	gi|257053469|ref|YP_003131302.1|	-	3.5e-16	59.6	0.1	1.3e-15	57.8	0.1	2.0	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|257053469|ref|YP_003131302.1|	-	2.4e-14	53.8	0.1	1.9e-13	50.9	0.0	2.4	3	0	0	3	3	3	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|257053469|ref|YP_003131302.1|	-	5.4e-13	49.1	0.0	7.5e-13	48.6	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|257053469|ref|YP_003131302.1|	-	6.1e-12	45.6	0.0	3.4e-11	43.1	0.0	2.0	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|257053469|ref|YP_003131302.1|	-	1e-06	29.4	0.1	1.5e-05	25.6	0.1	2.6	2	1	0	2	2	2	1	Methyltransferase	domain
MetW	PF07021.12	gi|257053469|ref|YP_003131302.1|	-	1.1e-05	25.2	0.0	2.1e-05	24.2	0.0	1.4	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Ubie_methyltran	PF01209.18	gi|257053469|ref|YP_003131302.1|	-	4.9e-05	22.8	0.0	0.00034	20.0	0.0	2.1	2	1	0	2	2	2	1	ubiE/COQ5	methyltransferase	family
Methyltransf_32	PF13679.6	gi|257053469|ref|YP_003131302.1|	-	0.00018	21.6	0.0	0.00041	20.4	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.19	gi|257053469|ref|YP_003131302.1|	-	0.00026	20.8	0.0	0.00046	20.0	0.0	1.3	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
RrnaAD	PF00398.20	gi|257053469|ref|YP_003131302.1|	-	0.00078	18.6	0.0	0.0012	18.0	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
MTS	PF05175.14	gi|257053469|ref|YP_003131302.1|	-	0.0019	17.8	0.0	0.0035	16.9	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	small	domain
FtsJ	PF01728.19	gi|257053469|ref|YP_003131302.1|	-	0.017	15.2	0.0	0.028	14.5	0.0	1.4	1	0	0	1	1	1	0	FtsJ-like	methyltransferase
PrmA	PF06325.13	gi|257053469|ref|YP_003131302.1|	-	0.049	13.0	0.1	0.11	11.9	0.0	1.5	2	0	0	2	2	2	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_2	PF00891.18	gi|257053469|ref|YP_003131302.1|	-	0.1	11.9	0.0	0.23	10.7	0.0	1.5	1	0	0	1	1	1	0	O-methyltransferase	domain
ATP_bind_3	PF01171.20	gi|257053471|ref|YP_003131304.1|	-	2.4e-14	53.5	0.0	3.6e-14	52.9	0.0	1.3	1	0	0	1	1	1	1	PP-loop	family
PAPS_reduct	PF01507.19	gi|257053471|ref|YP_003131304.1|	-	7e-07	29.4	0.0	1e-06	28.9	0.0	1.2	1	0	0	1	1	1	1	Phosphoadenosine	phosphosulfate	reductase	family
NAD_synthase	PF02540.17	gi|257053471|ref|YP_003131304.1|	-	0.00022	20.4	0.0	0.00043	19.5	0.0	1.4	1	0	0	1	1	1	1	NAD	synthase
tRNA_Me_trans	PF03054.16	gi|257053471|ref|YP_003131304.1|	-	0.0075	15.1	0.0	0.011	14.5	0.0	1.2	1	0	0	1	1	1	1	tRNA	methyl	transferase
Lar_restr_allev	PF14354.6	gi|257053471|ref|YP_003131304.1|	-	0.033	14.6	3.4	3.9	7.9	0.1	3.3	3	0	0	3	3	3	0	Restriction	alleviation	protein	Lar
ZZ	PF00569.17	gi|257053471|ref|YP_003131304.1|	-	2.8	7.8	5.6	11	6.0	0.2	2.5	2	0	0	2	2	2	0	Zinc	finger,	ZZ	type
Tubulin	PF00091.25	gi|257053472|ref|YP_003131305.1|	-	5.3e-37	127.9	3.3	1.3e-36	126.7	3.3	1.7	1	1	0	1	1	1	1	Tubulin/FtsZ	family,	GTPase	domain
FtsZ_C	PF12327.8	gi|257053472|ref|YP_003131305.1|	-	1.7e-34	118.0	0.7	1.7e-34	118.0	0.7	2.7	2	1	1	3	3	3	1	FtsZ	family,	C-terminal	domain
Csm1_B	PF18211.1	gi|257053472|ref|YP_003131305.1|	-	0.2	11.5	0.0	0.54	10.1	0.0	1.7	1	0	0	1	1	1	0	Csm1	subunit	domain	B
RHH_1	PF01402.21	gi|257053473|ref|YP_003131306.1|	-	5.3e-08	32.5	0.3	7.9e-08	32.0	0.3	1.3	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
RHH_8	PF17723.1	gi|257053473|ref|YP_003131306.1|	-	7.7e-06	26.1	0.0	7.9e-06	26.0	0.0	1.0	1	0	0	1	1	1	1	Ribbon-Helix-Helix	transcriptional	regulator	family
DZR	PF12773.7	gi|257053474|ref|YP_003131307.1|	-	2.1e-10	40.5	21.1	2.1e-07	30.9	10.5	1.9	1	1	1	2	2	2	2	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|257053474|ref|YP_003131307.1|	-	5.8e-10	38.5	11.4	5.8e-06	25.8	4.0	2.4	2	0	0	2	2	2	2	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|257053474|ref|YP_003131307.1|	-	9e-10	37.6	11.9	8.1e-06	25.1	4.5	2.6	1	1	0	2	2	2	2	zinc-ribbon	domain
zinc_ribbon_15	PF17032.5	gi|257053474|ref|YP_003131307.1|	-	2.8e-07	31.2	6.6	6.5e-05	23.6	0.4	2.2	2	0	0	2	2	2	2	zinc-ribbon	family
zf-NADH-PPase	PF09297.11	gi|257053474|ref|YP_003131307.1|	-	4.1e-05	23.1	5.9	0.25	11.0	0.2	3.4	3	0	0	3	3	3	2	NADH	pyrophosphatase	zinc	ribbon	domain
PolC_DP2	PF03833.13	gi|257053474|ref|YP_003131307.1|	-	0.00075	17.5	1.0	0.00082	17.4	1.0	1.2	1	0	0	1	1	1	1	DNA	polymerase	II	large	subunit	DP2
Nudix_N_2	PF14803.6	gi|257053474|ref|YP_003131307.1|	-	0.004	17.0	11.5	3.1	7.8	2.4	3.7	3	1	0	3	3	3	2	Nudix	N-terminal
RHH_1	PF01402.21	gi|257053474|ref|YP_003131307.1|	-	0.0088	15.9	5.4	0.014	15.4	0.1	3.3	4	0	0	4	4	3	1	Ribbon-helix-helix	protein,	copG	family
Zn-ribbon_8	PF09723.10	gi|257053474|ref|YP_003131307.1|	-	0.012	15.7	11.5	0.057	13.5	3.3	3.3	2	1	1	3	3	3	0	Zinc	ribbon	domain
HypA	PF01155.19	gi|257053474|ref|YP_003131307.1|	-	0.013	15.6	10.0	0.022	14.8	2.1	2.5	1	1	1	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
NOB1_Zn_bind	PF08772.11	gi|257053474|ref|YP_003131307.1|	-	0.013	15.7	11.2	0.13	12.4	4.4	2.6	1	1	1	2	2	2	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
zinc-ribbons_6	PF07191.12	gi|257053474|ref|YP_003131307.1|	-	0.024	14.6	9.7	0.063	13.3	5.8	2.3	1	1	1	2	2	2	0	zinc-ribbons
OrfB_Zn_ribbon	PF07282.11	gi|257053474|ref|YP_003131307.1|	-	0.028	14.4	12.6	2.1	8.3	12.6	2.5	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
VapB_antitoxin	PF09957.9	gi|257053474|ref|YP_003131307.1|	-	0.041	13.8	0.0	0.17	11.9	0.0	2.0	2	0	0	2	2	1	0	Bacterial	antitoxin	of	type	II	TA	system,	VapB
zf_UBZ	PF18439.1	gi|257053474|ref|YP_003131307.1|	-	0.14	11.8	6.3	2	8.1	0.2	3.4	2	1	1	3	3	3	0	Ubiquitin-Binding	Zinc	Finger
UPF0547	PF10571.9	gi|257053474|ref|YP_003131307.1|	-	0.16	12.0	8.6	0.54	10.4	1.2	2.5	2	1	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
zf-ACC	PF17848.1	gi|257053474|ref|YP_003131307.1|	-	0.19	11.9	6.1	9.1	6.5	0.0	3.4	3	0	0	3	3	3	0	Acetyl-coA	carboxylase	zinc	finger	domain
Cys_rich_KTR	PF14205.6	gi|257053474|ref|YP_003131307.1|	-	0.21	11.4	4.0	5.3	6.9	4.3	2.3	1	1	1	2	2	2	0	Cysteine-rich	KTR
zf-C3HC4_3	PF13920.6	gi|257053474|ref|YP_003131307.1|	-	0.37	10.7	7.4	0.44	10.4	1.3	2.2	1	1	1	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
Prok-RING_1	PF14446.6	gi|257053474|ref|YP_003131307.1|	-	0.55	10.2	12.7	1.2	9.1	7.0	2.7	2	1	1	3	3	3	0	Prokaryotic	RING	finger	family	1
zf-RING_7	PF02591.15	gi|257053474|ref|YP_003131307.1|	-	0.93	9.7	12.1	5.6	7.2	0.3	3.4	3	0	0	3	3	3	0	C4-type	zinc	ribbon	domain
Ribosomal_L32p	PF01783.23	gi|257053474|ref|YP_003131307.1|	-	1.5	9.2	7.5	0.42	10.9	1.3	2.5	1	1	2	3	3	3	0	Ribosomal	L32p	protein	family
Sgf11	PF08209.11	gi|257053474|ref|YP_003131307.1|	-	2.1	8.0	8.3	8.7	6.0	0.7	3.1	2	1	1	3	3	3	0	Sgf11	(transcriptional	regulation	protein)
DUF1610	PF07754.11	gi|257053474|ref|YP_003131307.1|	-	3.1	7.9	11.9	0.2	11.6	1.0	3.2	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1610)
DNA_ligase_ZBD	PF03119.16	gi|257053474|ref|YP_003131307.1|	-	3.2	7.9	8.7	4.1	7.5	0.2	3.1	3	0	0	3	3	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
TF_Zn_Ribbon	PF08271.12	gi|257053474|ref|YP_003131307.1|	-	3.4	7.3	16.9	0.61	9.7	0.9	3.4	1	1	2	3	3	3	0	TFIIB	zinc-binding
C1_1	PF00130.22	gi|257053474|ref|YP_003131307.1|	-	5.4	7.0	8.5	7.4	6.6	5.5	2.1	1	1	1	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
zf-LITAF-like	PF10601.9	gi|257053474|ref|YP_003131307.1|	-	5.9	7.2	10.0	13	6.1	3.6	2.9	1	1	2	3	3	3	0	LITAF-like	zinc	ribbon	domain
Zn_Tnp_IS91	PF14319.6	gi|257053474|ref|YP_003131307.1|	-	6.9	6.8	9.8	29	4.8	9.8	2.1	1	1	0	1	1	1	0	Transposase	zinc-binding	domain
PAS_4	PF08448.10	gi|257053475|ref|YP_003131308.1|	-	8.9e-26	90.3	1.6	1.7e-15	57.2	0.1	2.9	2	0	0	2	2	2	2	PAS	fold
Response_reg	PF00072.24	gi|257053475|ref|YP_003131308.1|	-	6.8e-24	84.2	0.0	3.7e-23	81.8	0.0	2.1	2	0	0	2	2	2	1	Response	regulator	receiver	domain
PAS_9	PF13426.7	gi|257053475|ref|YP_003131308.1|	-	7.5e-17	61.5	0.0	1.5e-10	41.3	0.0	2.7	2	0	0	2	2	2	2	PAS	domain
HATPase_c	PF02518.26	gi|257053475|ref|YP_003131308.1|	-	4.1e-14	53.0	0.0	1e-13	51.7	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS	PF00989.25	gi|257053475|ref|YP_003131308.1|	-	4.9e-13	49.1	0.2	1e-08	35.2	0.0	3.3	3	0	0	3	3	3	2	PAS	fold
GAF_2	PF13185.6	gi|257053475|ref|YP_003131308.1|	-	2.7e-12	47.2	2.7	7.2e-12	45.8	0.6	2.6	2	0	0	2	2	2	1	GAF	domain
PAS_8	PF13188.7	gi|257053475|ref|YP_003131308.1|	-	6.8e-10	38.8	0.2	0.0019	18.2	0.0	3.3	3	0	0	3	3	2	2	PAS	domain
GAF	PF01590.26	gi|257053475|ref|YP_003131308.1|	-	7.8e-09	36.3	0.7	7.5e-08	33.1	0.1	2.6	3	0	0	3	3	2	1	GAF	domain
GAF_3	PF13492.6	gi|257053475|ref|YP_003131308.1|	-	4.7e-08	33.4	0.1	3.2e-07	30.7	0.0	2.4	2	0	0	2	2	2	1	GAF	domain
PAS_3	PF08447.12	gi|257053475|ref|YP_003131308.1|	-	4.1e-05	23.8	0.0	0.00068	19.9	0.0	2.8	2	0	0	2	2	2	1	PAS	fold
PAS_7	PF12860.7	gi|257053475|ref|YP_003131308.1|	-	0.00014	22.0	0.6	0.65	10.2	0.0	3.7	3	2	0	3	3	3	2	PAS	fold
HATPase_c_2	PF13581.6	gi|257053475|ref|YP_003131308.1|	-	0.012	15.6	0.7	0.15	12.0	0.1	2.7	2	0	0	2	2	2	0	Histidine	kinase-like	ATPase	domain
HisKA_4TM	PF16926.5	gi|257053475|ref|YP_003131308.1|	-	0.066	12.8	0.2	0.13	11.8	0.2	1.4	1	0	0	1	1	1	0	Archaeal	4TM	region	of	histidine	kinase
HATPase_c_3	PF13589.6	gi|257053475|ref|YP_003131308.1|	-	0.12	12.2	0.0	0.3	10.9	0.0	1.6	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|257053475|ref|YP_003131308.1|	-	0.14	12.2	8.4	0.025	14.6	3.1	2.6	3	0	0	3	3	3	0	His	Kinase	A	(phospho-acceptor)	domain
Aldo_ket_red	PF00248.21	gi|257053476|ref|YP_003131309.1|	-	1.2e-63	215.1	0.0	1.3e-63	214.9	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
ThiP_synth	PF10120.9	gi|257053477|ref|YP_003131310.1|	-	8.4e-47	158.9	0.1	1.1e-46	158.4	0.1	1.2	1	0	0	1	1	1	1	Thiamine-phosphate	synthase
HTH_37	PF13744.6	gi|257053477|ref|YP_003131310.1|	-	8.3e-05	22.5	0.0	0.00016	21.6	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_3	PF01381.22	gi|257053477|ref|YP_003131310.1|	-	0.00014	21.8	0.0	0.00026	21.0	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix
HTH_31	PF13560.6	gi|257053477|ref|YP_003131310.1|	-	0.00015	22.0	0.2	0.001	19.3	0.2	2.4	1	1	0	1	1	1	1	Helix-turn-helix	domain
Sigma70_r4	PF04545.16	gi|257053477|ref|YP_003131310.1|	-	0.00015	21.2	0.0	0.0004	19.8	0.0	1.7	1	0	0	1	1	1	1	Sigma-70,	region	4
MarR_2	PF12802.7	gi|257053477|ref|YP_003131310.1|	-	0.00021	21.1	0.1	0.00053	19.8	0.1	1.7	1	0	0	1	1	1	1	MarR	family
HTH_23	PF13384.6	gi|257053477|ref|YP_003131310.1|	-	0.00054	19.7	0.0	0.0018	18.0	0.0	1.9	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_24	PF13412.6	gi|257053477|ref|YP_003131310.1|	-	0.00083	18.9	0.0	0.0016	17.9	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_19	PF12844.7	gi|257053477|ref|YP_003131310.1|	-	0.003	17.5	0.0	0.0062	16.5	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
RepB	PF07506.11	gi|257053477|ref|YP_003131310.1|	-	0.0039	17.3	0.0	0.0073	16.4	0.0	1.4	1	0	0	1	1	1	1	RepB	plasmid	partitioning	protein
HTH_Crp_2	PF13545.6	gi|257053477|ref|YP_003131310.1|	-	0.0054	16.7	0.0	0.016	15.2	0.0	1.8	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_11	PF08279.12	gi|257053477|ref|YP_003131310.1|	-	0.011	15.6	0.0	0.022	14.7	0.0	1.4	1	0	0	1	1	1	0	HTH	domain
P22_Cro	PF14549.6	gi|257053477|ref|YP_003131310.1|	-	0.046	13.6	0.1	0.34	10.8	0.0	2.2	2	0	0	2	2	2	0	DNA-binding	transcriptional	regulator	Cro
YdaS_antitoxin	PF15943.5	gi|257053477|ref|YP_003131310.1|	-	0.051	13.4	0.0	0.16	11.9	0.0	1.8	1	0	0	1	1	1	0	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
HTH_5	PF01022.20	gi|257053477|ref|YP_003131310.1|	-	0.062	13.2	0.0	0.12	12.2	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Sigma70_r4_2	PF08281.12	gi|257053477|ref|YP_003131310.1|	-	0.076	12.7	0.0	0.16	11.7	0.0	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_38	PF13936.6	gi|257053477|ref|YP_003131310.1|	-	0.13	12.1	0.0	0.39	10.5	0.0	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain
MarR	PF01047.22	gi|257053477|ref|YP_003131310.1|	-	0.18	11.7	0.0	0.44	10.5	0.0	1.6	1	0	0	1	1	1	0	MarR	family
Hydantoinase_A	PF01968.18	gi|257053478|ref|YP_003131311.1|	-	7.9e-96	320.7	17.0	7.7e-94	314.2	9.6	2.5	3	0	0	3	3	3	2	Hydantoinase/oxoprolinase
Hydant_A_N	PF05378.13	gi|257053478|ref|YP_003131311.1|	-	4e-47	160.2	3.0	5.3e-47	159.8	0.1	2.3	2	0	0	2	2	2	1	Hydantoinase/oxoprolinase	N-terminal	region
MutL	PF13941.6	gi|257053478|ref|YP_003131311.1|	-	0.0055	15.4	9.7	0.026	13.1	1.2	2.5	2	0	0	2	2	2	2	MutL	protein
DNA_pol3_beta_2	PF02767.16	gi|257053478|ref|YP_003131311.1|	-	0.069	13.4	0.1	0.17	12.1	0.1	1.6	1	0	0	1	1	1	0	DNA	polymerase	III	beta	subunit,	central	domain
Hydantoinase_B	PF02538.14	gi|257053479|ref|YP_003131312.1|	-	2.5e-198	659.7	7.6	2.8e-198	659.5	7.6	1.0	1	0	0	1	1	1	1	Hydantoinase	B/oxoprolinase
DUF4129	PF13559.6	gi|257053480|ref|YP_003131313.1|	-	7.2e-11	42.2	3.8	1.8e-10	40.9	3.8	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4129)
DUF417	PF04224.12	gi|257053480|ref|YP_003131313.1|	-	0.47	10.0	2.3	0.83	9.2	2.3	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF417
DUF58	PF01882.18	gi|257053481|ref|YP_003131314.1|	-	1.6e-16	60.4	0.8	4.7e-16	58.8	0.8	1.9	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF58
DUF11	PF01345.18	gi|257053481|ref|YP_003131314.1|	-	2.1e-08	34.3	0.4	9.6e-08	32.2	0.1	2.3	2	0	0	2	2	2	1	Domain	of	unknown	function	DUF11
NPCBM_assoc	PF10633.9	gi|257053481|ref|YP_003131314.1|	-	6.4e-05	23.1	1.2	0.00056	20.1	0.1	2.9	3	0	0	3	3	3	1	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
Phage_holin_3_6	PF07332.11	gi|257053481|ref|YP_003131314.1|	-	4.3	7.4	10.6	7.7	6.6	2.6	2.5	2	0	0	2	2	2	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
HTH_11	PF08279.12	gi|257053483|ref|YP_003131316.1|	-	1.1e-05	25.3	0.0	1.5e-05	24.8	0.0	1.2	1	0	0	1	1	1	1	HTH	domain
HTH_20	PF12840.7	gi|257053483|ref|YP_003131316.1|	-	0.00013	21.9	0.0	0.00015	21.8	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_Mga	PF08280.11	gi|257053483|ref|YP_003131316.1|	-	0.0027	17.7	0.1	0.0036	17.3	0.1	1.2	1	0	0	1	1	1	1	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
HTH_17	PF12728.7	gi|257053483|ref|YP_003131316.1|	-	0.003	17.7	0.0	0.0052	16.9	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_CodY	PF08222.11	gi|257053483|ref|YP_003131316.1|	-	0.0042	16.6	0.0	0.0054	16.3	0.0	1.1	1	0	0	1	1	1	1	CodY	helix-turn-helix	domain
HTH_23	PF13384.6	gi|257053483|ref|YP_003131316.1|	-	0.0062	16.3	0.0	0.0095	15.7	0.0	1.3	1	0	0	1	1	1	1	Homeodomain-like	domain
Sigma70_r4	PF04545.16	gi|257053483|ref|YP_003131316.1|	-	0.0064	16.0	0.0	0.012	15.1	0.0	1.6	1	1	0	1	1	1	1	Sigma-70,	region	4
SgrR_N	PF12793.7	gi|257053483|ref|YP_003131316.1|	-	0.032	14.4	0.1	0.069	13.4	0.1	1.6	1	1	1	2	2	2	0	Sugar	transport-related	sRNA	regulator	N-term
HTH_7	PF02796.15	gi|257053483|ref|YP_003131316.1|	-	0.073	13.2	0.0	0.11	12.6	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	resolvase
HTH_AsnC-type	PF13404.6	gi|257053483|ref|YP_003131316.1|	-	0.1	12.5	0.1	0.19	11.6	0.1	1.5	1	1	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|257053483|ref|YP_003131316.1|	-	0.1	12.6	0.0	0.11	12.5	0.0	1.2	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
DUF4129	PF13559.6	gi|257053484|ref|YP_003131317.1|	-	2.1e-11	43.9	3.8	4.8e-11	42.8	3.8	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4129)
Trypan_PARP	PF05887.11	gi|257053484|ref|YP_003131317.1|	-	0.055	13.5	3.9	8.7	6.3	2.0	2.7	2	0	0	2	2	2	0	Procyclic	acidic	repetitive	protein	(PARP)
DUF58	PF01882.18	gi|257053485|ref|YP_003131318.1|	-	8.4e-20	70.9	1.9	1.3e-19	70.2	0.5	2.1	2	0	0	2	2	2	1	Protein	of	unknown	function	DUF58
DUF11	PF01345.18	gi|257053485|ref|YP_003131318.1|	-	1.4e-05	25.3	0.0	8.2e-05	22.8	0.0	2.3	2	0	0	2	2	2	1	Domain	of	unknown	function	DUF11
NPCBM_assoc	PF10633.9	gi|257053485|ref|YP_003131318.1|	-	0.0022	18.2	0.0	0.011	16.0	0.0	2.2	2	0	0	2	2	2	1	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
SfLAP	PF11139.8	gi|257053485|ref|YP_003131318.1|	-	0.0075	15.7	1.3	0.0075	15.7	1.3	1.6	2	0	0	2	2	2	1	Sap,	sulfolipid-1-addressing	protein
CARDB	PF07705.11	gi|257053485|ref|YP_003131318.1|	-	0.052	13.8	0.0	10	6.4	0.0	2.4	2	0	0	2	2	2	0	CARDB
Phage_holin_3_6	PF07332.11	gi|257053485|ref|YP_003131318.1|	-	1.6	8.8	9.7	2.6	8.1	4.6	2.6	2	0	0	2	2	2	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
DUF202	PF02656.15	gi|257053485|ref|YP_003131318.1|	-	1.7	9.1	8.8	29	5.2	5.3	2.9	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF202)
DUF1427	PF07235.11	gi|257053486|ref|YP_003131319.1|	-	0.42	10.6	16.6	0.079	12.9	3.2	2.9	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF1427)
AAA_3	PF07726.11	gi|257053487|ref|YP_003131320.1|	-	1.6e-65	218.9	0.0	2.6e-65	218.2	0.0	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_2	PF17863.1	gi|257053487|ref|YP_003131320.1|	-	3.3e-20	71.7	2.1	7.7e-20	70.5	2.1	1.7	1	0	0	1	1	1	1	AAA	lid	domain
AAA_5	PF07728.14	gi|257053487|ref|YP_003131320.1|	-	6.1e-16	58.7	0.0	1.7e-15	57.2	0.0	1.8	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.29	gi|257053487|ref|YP_003131320.1|	-	3e-07	30.9	0.0	2.1e-06	28.2	0.0	2.4	3	1	0	3	3	3	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.26	gi|257053487|ref|YP_003131320.1|	-	2.7e-05	24.0	0.0	0.0012	18.6	0.0	2.5	1	1	1	2	2	2	1	Sigma-54	interaction	domain
Mg_chelatase	PF01078.21	gi|257053487|ref|YP_003131320.1|	-	0.0013	18.2	0.2	0.12	11.7	0.0	2.2	2	0	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
MCM	PF00493.23	gi|257053487|ref|YP_003131320.1|	-	0.0025	16.9	0.0	0.005	16.0	0.0	1.5	1	1	0	1	1	1	1	MCM	P-loop	domain
AAA_2	PF07724.14	gi|257053487|ref|YP_003131320.1|	-	0.0094	16.1	0.0	0.022	14.9	0.0	1.5	1	1	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
RuvB_N	PF05496.12	gi|257053487|ref|YP_003131320.1|	-	0.011	15.5	0.0	0.19	11.5	0.0	2.2	1	1	0	1	1	1	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_19	PF13245.6	gi|257053487|ref|YP_003131320.1|	-	0.016	15.6	0.0	3.8	7.9	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
Viral_helicase1	PF01443.18	gi|257053487|ref|YP_003131320.1|	-	0.033	13.9	0.0	0.08	12.7	0.0	1.5	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
AAA_30	PF13604.6	gi|257053487|ref|YP_003131320.1|	-	0.056	13.2	0.1	9.6	5.9	0.1	2.6	3	0	0	3	3	3	0	AAA	domain
AAA_lid_8	PF17868.1	gi|257053487|ref|YP_003131320.1|	-	0.16	11.9	0.0	0.3	11.0	0.0	1.4	1	0	0	1	1	1	0	AAA	lid	domain
AAA_6	PF12774.7	gi|257053487|ref|YP_003131320.1|	-	0.22	10.5	0.0	2.3	7.1	0.0	2.0	2	0	0	2	2	2	0	Hydrolytic	ATP	binding	site	of	dynein	motor	region
Mg_chelatase_C	PF13335.6	gi|257053487|ref|YP_003131320.1|	-	0.23	12.1	1.6	0.38	11.4	0.6	1.9	2	0	0	2	2	1	0	Magnesium	chelatase,	subunit	ChlI	C-terminal
DUF2070	PF09843.9	gi|257053488|ref|YP_003131321.1|	-	6.7e-208	691.5	0.0	7.7e-208	691.3	0.0	1.0	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2070)
Glyco_hydro_43	PF04616.14	gi|257053489|ref|YP_003131322.1|	-	5.6e-56	190.0	7.4	7.5e-56	189.5	7.4	1.2	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	43
Dockerin_1	PF00404.18	gi|257053489|ref|YP_003131322.1|	-	3.3e-06	27.2	4.7	7.3e-06	26.1	4.7	1.6	1	0	0	1	1	1	1	Dockerin	type	I	domain
EF-hand_6	PF13405.6	gi|257053489|ref|YP_003131322.1|	-	7.2e-05	22.4	2.8	0.33	11.0	0.3	3.7	3	0	0	3	3	3	2	EF-hand	domain
EF-hand_7	PF13499.6	gi|257053489|ref|YP_003131322.1|	-	0.0012	19.3	0.7	1	9.8	0.0	3.0	2	1	0	3	3	3	2	EF-hand	domain	pair
Glyco_hydro_32N	PF00251.20	gi|257053489|ref|YP_003131322.1|	-	0.021	14.4	0.4	0.16	11.5	0.0	2.0	1	1	1	2	2	2	0	Glycosyl	hydrolases	family	32	N-terminal	domain
EF-hand_1	PF00036.32	gi|257053489|ref|YP_003131322.1|	-	0.025	14.1	5.8	0.59	9.8	0.0	3.2	3	0	0	3	3	3	0	EF	hand
GATase	PF00117.28	gi|257053490|ref|YP_003131323.1|	-	3.6e-33	115.0	0.0	4e-33	114.8	0.0	1.0	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|257053490|ref|YP_003131323.1|	-	1.2e-12	48.0	1.6	4.6e-11	42.9	0.3	2.7	2	1	0	2	2	2	1	Peptidase	C26
GATase_3	PF07685.14	gi|257053490|ref|YP_003131323.1|	-	0.043	13.4	0.1	0.46	10.1	0.0	2.0	2	0	0	2	2	2	0	CobB/CobQ-like	glutamine	amidotransferase	domain
HisKA_4TM	PF16926.5	gi|257053491|ref|YP_003131324.1|	-	8.7e-08	31.9	1.3	8.7e-08	31.9	1.3	1.7	2	0	0	2	2	2	1	Archaeal	4TM	region	of	histidine	kinase
HATPase_c	PF02518.26	gi|257053491|ref|YP_003131324.1|	-	0.011	16.3	0.0	0.023	15.2	0.0	1.5	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Phage_holin_3_6	PF07332.11	gi|257053491|ref|YP_003131324.1|	-	0.37	10.9	8.3	1.1	9.3	0.4	2.9	3	0	0	3	3	3	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
C1_1	PF00130.22	gi|257053492|ref|YP_003131325.1|	-	0.064	13.1	0.1	0.064	13.1	0.1	2.7	3	0	0	3	3	3	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
RecA_dep_nuc	PF16786.5	gi|257053492|ref|YP_003131325.1|	-	0.071	13.3	1.1	0.19	11.9	0.1	2.0	2	0	0	2	2	2	0	Recombination	enhancement,	RecA-dependent	nuclease
DUF192	PF02643.15	gi|257053493|ref|YP_003131326.1|	-	2e-18	66.3	0.0	2.3e-18	66.1	0.0	1.1	1	0	0	1	1	1	1	Uncharacterized	ACR,	COG1430
MoeA_C	PF03454.15	gi|257053493|ref|YP_003131326.1|	-	0.0019	18.4	0.1	0.0041	17.3	0.1	1.5	1	0	0	1	1	1	1	MoeA	C-terminal	region	(domain	IV)
HMGL-like	PF00682.19	gi|257053494|ref|YP_003131327.1|	-	1.4e-66	224.8	2.8	1.4e-66	224.8	2.8	1.9	2	0	0	2	2	2	1	HMGL-like
LeuA_dimer	PF08502.10	gi|257053494|ref|YP_003131327.1|	-	8.2e-29	100.2	1.9	1.5e-28	99.3	1.9	1.5	1	0	0	1	1	1	1	LeuA	allosteric	(dimerisation)	domain
AP_endonuc_2	PF01261.24	gi|257053494|ref|YP_003131327.1|	-	0.18	11.2	4.0	0.1	12.0	0.2	2.3	3	0	0	3	3	3	0	Xylose	isomerase-like	TIM	barrel
Multi_Drug_Res	PF00893.19	gi|257053496|ref|YP_003131329.1|	-	4.9e-28	97.6	5.5	7.2e-28	97.1	5.5	1.2	1	0	0	1	1	1	1	Small	Multidrug	Resistance	protein
EamA	PF00892.20	gi|257053496|ref|YP_003131329.1|	-	0.047	13.9	11.5	0.077	13.2	11.5	1.4	1	1	0	1	1	1	0	EamA-like	transporter	family
HAD_2	PF13419.6	gi|257053497|ref|YP_003131330.1|	-	5.3e-17	62.5	0.0	7.7e-17	61.9	0.0	1.2	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|257053497|ref|YP_003131330.1|	-	4.3e-09	36.3	0.1	9.6e-09	35.2	0.1	1.6	1	0	0	1	1	1	1	HAD-hyrolase-like
Hydrolase	PF00702.26	gi|257053497|ref|YP_003131330.1|	-	3.4e-08	34.0	1.0	9.7e-07	29.3	1.0	2.1	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|257053497|ref|YP_003131330.1|	-	0.00013	22.4	0.7	0.0002	21.8	0.7	1.3	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
AhpC-TSA	PF00578.21	gi|257053498|ref|YP_003131331.1|	-	2.3e-19	69.5	0.0	3e-19	69.2	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|257053498|ref|YP_003131331.1|	-	0.00045	19.9	0.0	0.00073	19.3	0.0	1.3	1	1	0	1	1	1	1	Redoxin
LMWPc	PF01451.21	gi|257053499|ref|YP_003131332.1|	-	8.2e-26	91.1	0.1	1.8e-25	90.0	0.1	1.5	1	1	0	1	1	1	1	Low	molecular	weight	phosphotyrosine	protein	phosphatase
HTH_5	PF01022.20	gi|257053500|ref|YP_003131333.1|	-	1.2e-16	60.2	0.5	2.3e-16	59.4	0.5	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|257053500|ref|YP_003131333.1|	-	5.4e-12	45.6	0.1	8.8e-12	44.9	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_27	PF13463.6	gi|257053500|ref|YP_003131333.1|	-	0.00026	21.4	0.1	0.00056	20.4	0.0	1.7	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.19	gi|257053500|ref|YP_003131333.1|	-	0.01	15.7	0.0	0.019	14.8	0.0	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
B-block_TFIIIC	PF04182.12	gi|257053500|ref|YP_003131333.1|	-	0.019	15.1	0.0	0.028	14.6	0.0	1.3	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
HTH_45	PF14947.6	gi|257053500|ref|YP_003131333.1|	-	0.027	14.4	0.0	0.039	13.9	0.0	1.5	1	1	0	1	1	1	0	Winged	helix-turn-helix
HTH_34	PF13601.6	gi|257053500|ref|YP_003131333.1|	-	0.033	14.4	0.0	0.049	13.8	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF4364	PF14277.6	gi|257053500|ref|YP_003131333.1|	-	0.06	13.1	0.0	0.067	12.9	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
HxlR	PF01638.17	gi|257053500|ref|YP_003131333.1|	-	0.11	12.3	0.0	0.14	12.0	0.0	1.3	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
DNase-RNase	PF02577.14	gi|257053501|ref|YP_003131334.1|	-	1.3e-36	125.0	0.0	1.6e-36	124.8	0.0	1.0	1	0	0	1	1	1	1	Bifunctional	nuclease
ATPase_2	PF01637.18	gi|257053502|ref|YP_003131335.1|	-	7.7e-26	91.4	0.0	1.8e-25	90.2	0.0	1.6	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
DUF234	PF03008.14	gi|257053502|ref|YP_003131335.1|	-	4.5e-25	88.0	0.0	1.1e-24	86.8	0.0	1.7	1	0	0	1	1	1	1	Archaea	bacterial	proteins	of	unknown	function
AAA_14	PF13173.6	gi|257053502|ref|YP_003131335.1|	-	2.9e-09	37.1	0.0	6.4e-09	35.9	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|257053502|ref|YP_003131335.1|	-	1.2e-06	29.1	0.0	2.8e-06	27.8	0.0	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|257053502|ref|YP_003131335.1|	-	0.001	19.3	0.0	0.0024	18.2	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
HTH_24	PF13412.6	gi|257053502|ref|YP_003131335.1|	-	0.0069	15.9	0.0	0.012	15.1	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_45	PF14947.6	gi|257053502|ref|YP_003131335.1|	-	0.016	15.1	0.0	0.043	13.8	0.0	1.7	1	0	0	1	1	1	0	Winged	helix-turn-helix
HTH_5	PF01022.20	gi|257053502|ref|YP_003131335.1|	-	0.02	14.8	0.0	0.037	13.9	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_IclR	PF09339.10	gi|257053502|ref|YP_003131335.1|	-	0.041	13.7	0.0	0.087	12.6	0.0	1.5	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|257053503|ref|YP_003131336.1|	-	0.0017	18.1	0.0	0.0045	16.8	0.0	1.6	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
EVI2A	PF05399.11	gi|257053503|ref|YP_003131336.1|	-	0.062	12.9	0.1	0.13	11.8	0.0	1.5	2	0	0	2	2	2	0	Ectropic	viral	integration	site	2A	protein	(EVI2A)
MarR_2	PF12802.7	gi|257053503|ref|YP_003131336.1|	-	0.07	13.0	0.0	0.16	11.9	0.0	1.5	1	0	0	1	1	1	0	MarR	family
HTH_24	PF13412.6	gi|257053503|ref|YP_003131336.1|	-	0.12	12.0	0.0	0.24	11.0	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
DUF2789	PF10982.8	gi|257053503|ref|YP_003131336.1|	-	0.16	12.2	0.0	0.29	11.3	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2789)
FAD-oxidase_C	PF02913.19	gi|257053504|ref|YP_003131337.1|	-	2.8e-58	197.5	0.0	6.4e-58	196.3	0.0	1.6	2	0	0	2	2	2	1	FAD	linked	oxidases,	C-terminal	domain
FAD_binding_4	PF01565.23	gi|257053504|ref|YP_003131337.1|	-	1.6e-38	131.6	0.2	2.8e-38	130.8	0.2	1.4	1	0	0	1	1	1	1	FAD	binding	domain
Fer4_17	PF13534.6	gi|257053504|ref|YP_003131337.1|	-	1.8e-09	38.0	3.6	3.4e-09	37.1	3.6	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|257053504|ref|YP_003131337.1|	-	3.2e-08	33.9	4.6	6.5e-08	32.9	4.6	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
CCG	PF02754.16	gi|257053504|ref|YP_003131337.1|	-	7e-08	32.6	0.0	1.5e-05	25.1	0.0	2.7	2	0	0	2	2	2	1	Cysteine-rich	domain
Fer4_10	PF13237.6	gi|257053504|ref|YP_003131337.1|	-	0.00037	20.5	3.4	0.0079	16.3	0.2	2.4	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|257053504|ref|YP_003131337.1|	-	0.0019	18.3	3.4	0.027	14.6	0.4	2.4	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|257053504|ref|YP_003131337.1|	-	0.037	14.2	3.2	0.1	12.8	0.5	2.3	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Cytokin-bind	PF09265.10	gi|257053504|ref|YP_003131337.1|	-	0.067	12.6	0.0	0.11	11.8	0.0	1.3	1	0	0	1	1	1	0	Cytokinin	dehydrogenase	1,	FAD	and	cytokinin	binding
Fer4_7	PF12838.7	gi|257053504|ref|YP_003131337.1|	-	0.24	12.0	7.6	2.2	9.0	8.0	2.3	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|257053504|ref|YP_003131337.1|	-	0.35	10.8	14.0	0.077	12.8	3.5	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
MatE	PF01554.18	gi|257053505|ref|YP_003131338.1|	-	1.3e-60	203.7	29.9	3e-31	108.3	9.1	2.4	2	0	0	2	2	2	2	MatE
MurJ	PF03023.14	gi|257053505|ref|YP_003131338.1|	-	1.4e-05	23.9	19.6	0.0016	17.2	9.9	2.2	1	1	1	2	2	2	2	Lipid	II	flippase	MurJ
Polysacc_synt_C	PF14667.6	gi|257053505|ref|YP_003131338.1|	-	0.0073	16.4	7.9	0.0073	16.4	7.9	5.2	4	3	0	4	4	4	2	Polysaccharide	biosynthesis	C-terminal	domain
AveC_like	PF17198.4	gi|257053505|ref|YP_003131338.1|	-	0.18	11.2	4.1	0.53	9.7	4.1	1.9	1	1	0	1	1	1	0	Spirocyclase	AveC-like
Ig_mannosidase	PF17753.1	gi|257053506|ref|YP_003131339.1|	-	1.9e-15	56.3	0.0	7.3e-15	54.5	0.0	2.0	2	0	0	2	2	2	1	Ig-fold	domain
Mannosidase_ig	PF17786.1	gi|257053506|ref|YP_003131339.1|	-	2.3e-08	34.5	0.0	7.9e-08	32.8	0.0	1.9	1	0	0	1	1	1	1	Mannosidase	Ig/CBM-like	domain
Glyco_hydro_2	PF00703.21	gi|257053506|ref|YP_003131339.1|	-	8.9e-08	32.8	0.0	6.1e-07	30.1	0.0	2.2	2	0	0	2	2	2	1	Glycosyl	hydrolases	family	2
Glyco_hydro_2_N	PF02837.18	gi|257053506|ref|YP_003131339.1|	-	1.5e-06	28.2	0.0	8.1e-06	25.8	0.0	2.1	2	0	0	2	2	2	1	Glycosyl	hydrolases	family	2,	sugar	binding	domain
Glyco_hydro_2_C	PF02836.17	gi|257053506|ref|YP_003131339.1|	-	0.00036	19.7	0.0	0.0019	17.4	0.0	2.0	1	1	0	1	1	1	1	Glycosyl	hydrolases	family	2,	TIM	barrel	domain
Ig_GlcNase	PF18368.1	gi|257053506|ref|YP_003131339.1|	-	0.0033	17.5	0.0	0.015	15.4	0.0	2.1	1	1	0	1	1	1	1	Exo-beta-D-glucosaminidase	Ig-fold	domain
Cadherin-like	PF12733.7	gi|257053506|ref|YP_003131339.1|	-	0.028	14.9	2.5	0.63	10.6	0.0	3.5	4	0	0	4	4	4	0	Cadherin-like	beta	sandwich	domain
Usp	PF00582.26	gi|257053507|ref|YP_003131340.1|	-	4.1e-11	43.6	0.1	1.4e-10	41.8	0.1	1.7	1	1	0	1	1	1	1	Universal	stress	protein	family
NIF3	PF01784.18	gi|257053507|ref|YP_003131340.1|	-	0.066	12.8	0.0	0.079	12.6	0.0	1.1	1	0	0	1	1	1	0	NIF3	(NGG1p	interacting	factor	3)
RAP80_UIM	PF18282.1	gi|257053507|ref|YP_003131340.1|	-	0.15	11.8	0.1	0.27	11.0	0.1	1.4	1	0	0	1	1	1	0	RAP80	N-terminal	ubiquitin	interaction	motif
Acetyltransf_3	PF13302.7	gi|257053508|ref|YP_003131341.1|	-	9.9e-20	71.6	0.0	1.2e-19	71.4	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|257053508|ref|YP_003131341.1|	-	2.2e-11	44.0	0.0	2.9e-11	43.6	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_4	PF13420.7	gi|257053508|ref|YP_003131341.1|	-	1.6e-07	31.6	0.0	1.8e-07	31.4	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|257053508|ref|YP_003131341.1|	-	0.0023	18.3	0.0	0.0038	17.6	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|257053508|ref|YP_003131341.1|	-	0.0057	16.6	0.0	0.0086	16.0	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.6	gi|257053508|ref|YP_003131341.1|	-	0.008	15.9	0.1	0.043	13.5	0.1	1.9	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|257053508|ref|YP_003131341.1|	-	0.04	13.9	0.0	0.062	13.3	0.0	1.3	1	0	0	1	1	1	0	FR47-like	protein
AP_endonuc_2	PF01261.24	gi|257053509|ref|YP_003131342.1|	-	9.3e-12	44.8	0.4	4.5e-09	36.1	0.5	2.2	1	1	1	2	2	2	2	Xylose	isomerase-like	TIM	barrel
HAMP	PF00672.25	gi|257053510|ref|YP_003131343.1|	-	6.3e-10	39.3	7.8	1.4e-06	28.5	0.1	3.9	3	0	0	3	3	3	2	HAMP	domain
dCache_1	PF02743.18	gi|257053510|ref|YP_003131343.1|	-	4.4e-07	30.0	1.7	4.4e-07	30.0	1.7	2.7	3	1	0	3	3	2	1	Cache	domain
DUF948	PF06103.11	gi|257053510|ref|YP_003131343.1|	-	0.0018	18.5	11.3	0.16	12.2	1.4	4.6	1	1	1	3	3	3	2	Bacterial	protein	of	unknown	function	(DUF948)
Sec34	PF04136.15	gi|257053510|ref|YP_003131343.1|	-	0.0039	17.1	2.0	0.0039	17.1	2.0	2.3	2	1	0	2	2	2	1	Sec34-like	family
DUF1664	PF07889.12	gi|257053510|ref|YP_003131343.1|	-	0.0088	16.1	1.2	0.0088	16.1	1.2	3.7	1	1	1	3	3	3	1	Protein	of	unknown	function	(DUF1664)
MCPsignal	PF00015.21	gi|257053510|ref|YP_003131343.1|	-	0.011	15.6	4.1	0.011	15.6	4.1	3.8	1	1	2	3	3	3	0	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
DUF3185	PF11381.8	gi|257053510|ref|YP_003131343.1|	-	0.022	14.7	0.6	1.2	9.2	0.1	3.5	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3185)
NPV_P10	PF05531.12	gi|257053510|ref|YP_003131343.1|	-	0.029	14.8	4.3	1.8	9.1	1.8	3.6	1	1	1	2	2	2	0	Nucleopolyhedrovirus	P10	protein
DUF2935	PF11155.8	gi|257053510|ref|YP_003131343.1|	-	0.03	14.7	0.1	4.3	7.7	0.8	3.4	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF2935)
Serine_rich	PF08824.10	gi|257053510|ref|YP_003131343.1|	-	0.042	13.9	1.9	0.12	12.4	1.9	1.7	1	0	0	1	1	1	0	Serine	rich	protein	interaction	domain
Syntaxin_2	PF14523.6	gi|257053510|ref|YP_003131343.1|	-	0.058	13.8	2.6	2	8.9	0.2	2.7	1	1	1	2	2	2	0	Syntaxin-like	protein
Dynamin_M	PF01031.20	gi|257053510|ref|YP_003131343.1|	-	0.072	12.3	5.0	0.073	12.3	3.6	1.6	1	1	0	1	1	1	0	Dynamin	central	region
DASH_Duo1	PF08651.10	gi|257053510|ref|YP_003131343.1|	-	0.098	12.4	1.9	0.36	10.6	0.2	2.8	2	1	0	2	2	2	0	DASH	complex	subunit	Duo1
Occludin_ELL	PF07303.13	gi|257053510|ref|YP_003131343.1|	-	0.21	12.3	5.2	0.36	11.6	0.2	2.8	3	0	0	3	3	2	0	Occludin	homology	domain
DUF16	PF01519.16	gi|257053510|ref|YP_003131343.1|	-	0.25	11.8	8.9	0.06	13.8	2.0	3.1	3	0	0	3	3	3	0	Protein	of	unknown	function	DUF16
Osmo_CC	PF08946.10	gi|257053510|ref|YP_003131343.1|	-	0.25	11.6	3.4	6.8	7.0	3.4	3.1	1	1	0	1	1	1	0	Osmosensory	transporter	coiled	coil
AAA_13	PF13166.6	gi|257053510|ref|YP_003131343.1|	-	0.26	9.9	14.2	0.14	10.7	12.1	1.4	1	1	0	1	1	1	0	AAA	domain
KxDL	PF10241.9	gi|257053510|ref|YP_003131343.1|	-	0.31	11.3	5.1	2.3	8.5	0.8	3.3	2	1	0	2	2	2	0	Uncharacterized	conserved	protein
TBCC_N	PF16752.5	gi|257053510|ref|YP_003131343.1|	-	0.41	11.1	15.1	0.19	12.2	5.9	3.2	1	1	1	2	2	2	0	Tubulin-specific	chaperone	C	N-terminal	domain
Spc7	PF08317.11	gi|257053510|ref|YP_003131343.1|	-	0.42	9.4	22.6	0.033	13.1	8.4	2.6	1	1	1	2	2	2	0	Spc7	kinetochore	protein
CorA	PF01544.18	gi|257053510|ref|YP_003131343.1|	-	0.55	9.5	16.6	0.21	10.9	0.5	3.3	1	1	1	2	2	2	0	CorA-like	Mg2+	transporter	protein
GAS	PF13851.6	gi|257053510|ref|YP_003131343.1|	-	0.74	9.1	16.2	4.5	6.6	14.0	2.5	1	1	1	2	2	2	0	Growth-arrest	specific	micro-tubule	binding
Prominin	PF05478.11	gi|257053510|ref|YP_003131343.1|	-	1.1	7.1	5.4	3.3	5.5	4.1	2.2	2	1	0	2	2	2	0	Prominin
Exonuc_VII_L	PF02601.15	gi|257053510|ref|YP_003131343.1|	-	1.2	8.6	9.6	5.4	6.5	9.6	2.0	1	1	0	1	1	1	0	Exonuclease	VII,	large	subunit
Fzo_mitofusin	PF04799.13	gi|257053510|ref|YP_003131343.1|	-	1.3	8.5	8.6	13	5.3	0.0	3.9	2	1	1	4	4	4	0	fzo-like	conserved	region
Allexi_40kDa	PF05549.11	gi|257053510|ref|YP_003131343.1|	-	1.5	8.2	5.0	0.36	10.3	1.2	1.8	2	0	0	2	2	2	0	Allexivirus	40kDa	protein
DUF4226	PF10774.9	gi|257053510|ref|YP_003131343.1|	-	1.5	9.1	9.2	11	6.4	5.4	3.0	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4226)
Streptin-Immun	PF11083.8	gi|257053510|ref|YP_003131343.1|	-	1.8	9.1	5.0	60	4.1	0.1	3.6	2	1	0	3	3	3	0	Lantibiotic	streptin	immunity	protein
TMPIT	PF07851.13	gi|257053510|ref|YP_003131343.1|	-	2.3	7.4	10.5	0.16	11.2	1.9	2.4	1	1	0	2	2	2	0	TMPIT-like	protein
RecG_N	PF17190.4	gi|257053510|ref|YP_003131343.1|	-	2.6	8.8	7.1	9.2	7.1	0.5	3.4	3	0	0	3	3	3	0	RecG	N-terminal	helical	domain
BAR_2	PF10455.9	gi|257053510|ref|YP_003131343.1|	-	3	6.9	9.1	0.63	9.1	2.4	2.2	1	1	0	2	2	2	0	Bin/amphiphysin/Rvs	domain	for	vesicular	trafficking
WXG100	PF06013.12	gi|257053510|ref|YP_003131343.1|	-	3.1	8.1	22.2	0.23	11.7	0.2	5.2	5	2	1	6	6	5	0	Proteins	of	100	residues	with	WXG
IFT57	PF10498.9	gi|257053510|ref|YP_003131343.1|	-	3.5	6.5	15.4	6.2	5.7	13.2	2.3	1	1	0	1	1	1	0	Intra-flagellar	transport	protein	57
Seryl_tRNA_N	PF02403.22	gi|257053510|ref|YP_003131343.1|	-	4.3	7.6	18.8	0.66	10.2	4.7	3.7	2	1	0	3	3	3	0	Seryl-tRNA	synthetase	N-terminal	domain
Dynactin_p22	PF07426.11	gi|257053510|ref|YP_003131343.1|	-	4.7	7.0	8.8	2.9	7.7	1.2	3.3	2	1	1	4	4	3	0	Dynactin	subunit	p22
Fib_alpha	PF08702.10	gi|257053510|ref|YP_003131343.1|	-	5	7.3	8.4	1.5	9.0	2.1	2.8	2	1	1	3	3	3	0	Fibrinogen	alpha/beta	chain	family
LMBR1	PF04791.16	gi|257053510|ref|YP_003131343.1|	-	5.6	5.8	6.8	8	5.2	5.8	1.7	1	1	0	1	1	1	0	LMBR1-like	membrane	protein
V_ATPase_I	PF01496.19	gi|257053510|ref|YP_003131343.1|	-	7.6	4.3	12.4	0.47	8.3	6.4	1.7	1	1	1	2	2	2	0	V-type	ATPase	116kDa	subunit	family
Laminin_II	PF06009.12	gi|257053510|ref|YP_003131343.1|	-	7.7	6.5	18.9	0.14	12.2	3.0	4.1	3	1	1	4	4	3	0	Laminin	Domain	II
HAMP	PF00672.25	gi|257053511|ref|YP_003131344.1|	-	1.5e-09	38.1	8.9	4.3e-06	27.0	0.1	4.1	4	0	0	4	4	3	2	HAMP	domain
DUF948	PF06103.11	gi|257053511|ref|YP_003131344.1|	-	0.0022	18.2	12.0	0.3	11.4	3.7	4.1	1	1	2	3	3	3	2	Bacterial	protein	of	unknown	function	(DUF948)
DUF1664	PF07889.12	gi|257053511|ref|YP_003131344.1|	-	0.011	15.8	0.9	0.011	15.8	0.9	3.9	1	1	3	4	4	4	0	Protein	of	unknown	function	(DUF1664)
Serine_rich	PF08824.10	gi|257053511|ref|YP_003131344.1|	-	0.014	15.4	3.9	0.037	14.0	3.9	1.8	1	0	0	1	1	1	0	Serine	rich	protein	interaction	domain
Sec34	PF04136.15	gi|257053511|ref|YP_003131344.1|	-	0.017	15.0	3.0	0.017	15.0	3.0	2.9	2	1	1	3	3	3	0	Sec34-like	family
Dynamin_M	PF01031.20	gi|257053511|ref|YP_003131344.1|	-	0.041	13.1	5.9	0.047	12.9	4.4	1.7	1	1	0	1	1	1	0	Dynamin	central	region
AAA_13	PF13166.6	gi|257053511|ref|YP_003131344.1|	-	0.049	12.3	14.5	0.015	13.9	11.2	1.6	1	1	0	1	1	1	0	AAA	domain
NPV_P10	PF05531.12	gi|257053511|ref|YP_003131344.1|	-	0.058	13.9	5.5	4.5	7.8	3.6	3.5	1	1	1	2	2	2	0	Nucleopolyhedrovirus	P10	protein
dCache_1	PF02743.18	gi|257053511|ref|YP_003131344.1|	-	0.069	12.9	8.7	0.035	13.9	0.4	2.7	2	1	0	2	2	2	0	Cache	domain
Osmo_CC	PF08946.10	gi|257053511|ref|YP_003131344.1|	-	0.075	13.3	1.0	0.68	10.2	1.0	2.8	1	1	0	1	1	1	0	Osmosensory	transporter	coiled	coil
DUF725	PF05267.12	gi|257053511|ref|YP_003131344.1|	-	0.15	12.1	2.0	1	9.4	1.2	2.7	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF725)
WXG100	PF06013.12	gi|257053511|ref|YP_003131344.1|	-	0.22	11.8	0.1	0.22	11.8	0.1	5.5	4	2	2	6	6	6	0	Proteins	of	100	residues	with	WXG
DASH_Duo1	PF08651.10	gi|257053511|ref|YP_003131344.1|	-	0.22	11.3	2.0	0.88	9.4	0.2	2.9	2	1	1	3	3	3	0	DASH	complex	subunit	Duo1
Alanine_zipper	PF11839.8	gi|257053511|ref|YP_003131344.1|	-	0.23	11.8	16.3	1.6	9.1	0.4	3.8	3	0	0	3	3	3	0	Alanine-zipper,	major	outer	membrane	lipoprotein
MCPsignal	PF00015.21	gi|257053511|ref|YP_003131344.1|	-	0.24	11.2	21.1	0.1	12.4	4.7	3.5	1	1	2	3	3	3	0	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
Syntaxin_2	PF14523.6	gi|257053511|ref|YP_003131344.1|	-	0.32	11.4	5.4	3.4	8.1	1.7	3.0	1	1	1	2	2	2	0	Syntaxin-like	protein
DUF16	PF01519.16	gi|257053511|ref|YP_003131344.1|	-	0.37	11.3	11.6	0.064	13.7	2.1	3.3	3	0	0	3	3	3	0	Protein	of	unknown	function	DUF16
DUF3185	PF11381.8	gi|257053511|ref|YP_003131344.1|	-	0.39	10.7	0.1	0.39	10.7	0.1	3.4	4	0	0	4	4	3	0	Protein	of	unknown	function	(DUF3185)
Laminin_II	PF06009.12	gi|257053511|ref|YP_003131344.1|	-	0.52	10.3	17.4	0.078	13.0	3.0	3.7	3	1	1	4	4	4	0	Laminin	Domain	II
Occludin_ELL	PF07303.13	gi|257053511|ref|YP_003131344.1|	-	0.66	10.7	5.9	1	10.1	0.2	3.1	2	1	1	3	3	3	0	Occludin	homology	domain
KxDL	PF10241.9	gi|257053511|ref|YP_003131344.1|	-	0.93	9.8	6.1	1.5	9.1	0.6	3.5	2	1	0	2	2	2	0	Uncharacterized	conserved	protein
Dynactin_p22	PF07426.11	gi|257053511|ref|YP_003131344.1|	-	1.1	9.0	8.3	1.3	8.8	1.0	3.6	2	1	2	5	5	5	0	Dynactin	subunit	p22
Exonuc_VII_L	PF02601.15	gi|257053511|ref|YP_003131344.1|	-	1.7	8.1	11.1	10	5.6	11.1	2.2	1	1	0	1	1	1	0	Exonuclease	VII,	large	subunit
Prominin	PF05478.11	gi|257053511|ref|YP_003131344.1|	-	1.9	6.4	7.4	6.2	4.6	5.7	2.4	2	1	0	2	2	2	0	Prominin
Spc7	PF08317.11	gi|257053511|ref|YP_003131344.1|	-	2.1	7.2	25.6	0.053	12.4	8.7	2.8	1	1	2	3	3	3	0	Spc7	kinetochore	protein
DUF2203	PF09969.9	gi|257053511|ref|YP_003131344.1|	-	2.7	8.8	20.4	0.1	13.3	2.3	3.8	1	1	2	3	3	3	0	Uncharacterized	conserved	protein	(DUF2203)
RecG_N	PF17190.4	gi|257053511|ref|YP_003131344.1|	-	2.7	8.8	7.0	12	6.7	0.4	3.6	3	0	0	3	3	3	0	RecG	N-terminal	helical	domain
DUF4618	PF15397.6	gi|257053511|ref|YP_003131344.1|	-	5.2	6.4	15.2	5.7	6.3	4.9	2.6	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4618)
BLOC1_2	PF10046.9	gi|257053511|ref|YP_003131344.1|	-	5.5	7.4	19.7	3	8.2	1.9	5.7	3	1	4	7	7	7	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
V_ATPase_I	PF01496.19	gi|257053511|ref|YP_003131344.1|	-	5.6	4.7	13.6	6.4	4.6	11.5	1.9	1	1	1	2	2	2	0	V-type	ATPase	116kDa	subunit	family
RmuC	PF02646.16	gi|257053511|ref|YP_003131344.1|	-	5.7	6.0	16.6	1.5	7.8	1.9	3.8	1	1	4	5	5	5	0	RmuC	family
CorA	PF01544.18	gi|257053511|ref|YP_003131344.1|	-	6.4	6.0	19.2	1.5	8.1	0.5	3.3	1	1	2	3	3	3	0	CorA-like	Mg2+	transporter	protein
TMPIT	PF07851.13	gi|257053511|ref|YP_003131344.1|	-	7	5.8	12.2	0.21	10.8	1.7	2.4	1	1	2	3	3	3	0	TMPIT-like	protein
Fzo_mitofusin	PF04799.13	gi|257053511|ref|YP_003131344.1|	-	7.9	6.0	10.8	9.4	5.8	0.1	3.9	2	1	2	4	4	4	0	fzo-like	conserved	region
FGGY_N	PF00370.21	gi|257053512|ref|YP_003131345.1|	-	8.8e-77	258.0	0.0	1.1e-76	257.6	0.0	1.1	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	N-terminal	domain
FGGY_C	PF02782.16	gi|257053512|ref|YP_003131345.1|	-	1.8e-35	122.5	0.0	2.9e-35	121.8	0.0	1.3	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	C-terminal	domain
DNA_pol_B_thumb	PF14791.6	gi|257053513|ref|YP_003131346.1|	-	7.9e-25	86.8	0.0	2.8e-24	85.1	0.0	2.0	1	0	0	1	1	1	1	DNA	polymerase	beta	thumb
HHH_8	PF14716.6	gi|257053513|ref|YP_003131346.1|	-	1.9e-17	63.3	8.2	7.2e-15	55.1	0.9	4.8	4	1	1	5	5	5	1	Helix-hairpin-helix	domain
HHH_5	PF14520.6	gi|257053513|ref|YP_003131346.1|	-	1.9e-16	60.4	0.8	8.8e-13	48.7	0.1	3.3	2	0	0	2	2	2	2	Helix-hairpin-helix	domain
PHP	PF02811.19	gi|257053513|ref|YP_003131346.1|	-	7.6e-10	39.3	0.0	1.5e-09	38.4	0.0	1.6	1	0	0	1	1	1	1	PHP	domain
HHH_2	PF12826.7	gi|257053513|ref|YP_003131346.1|	-	6.7e-06	26.1	1.2	0.013	15.5	0.1	2.9	2	1	0	2	2	2	2	Helix-hairpin-helix	motif
DNA_pol_lambd_f	PF10391.9	gi|257053513|ref|YP_003131346.1|	-	2.9e-05	23.8	0.0	0.00036	20.3	0.0	2.6	2	1	0	2	2	2	1	Fingers	domain	of	DNA	polymerase	lambda
DNA_pol_B_palm	PF14792.6	gi|257053513|ref|YP_003131346.1|	-	0.0005	20.3	0.0	0.0012	19.0	0.0	1.7	1	0	0	1	1	1	1	DNA	polymerase	beta	palm
HHH_3	PF12836.7	gi|257053513|ref|YP_003131346.1|	-	0.0023	18.2	0.0	2.6	8.4	0.0	3.3	3	0	0	3	3	3	1	Helix-hairpin-helix	motif
HHH	PF00633.23	gi|257053513|ref|YP_003131346.1|	-	0.0036	17.1	0.1	0.035	14.0	0.1	2.8	3	0	0	3	3	3	1	Helix-hairpin-helix	motif
Cdd1	PF11731.8	gi|257053513|ref|YP_003131346.1|	-	0.014	15.6	0.0	3.7	7.8	0.0	2.6	1	1	1	2	2	2	0	Pathogenicity	locus
Glyco_hydro_43	PF04616.14	gi|257053515|ref|YP_003131348.1|	-	3e-54	184.3	4.2	4.9e-54	183.6	4.2	1.3	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	43
RicinB_lectin_2	PF14200.6	gi|257053515|ref|YP_003131348.1|	-	5e-35	120.1	13.9	9.3e-22	77.6	2.6	3.0	3	0	0	3	3	3	2	Ricin-type	beta-trefoil	lectin	domain-like
Ricin_B_lectin	PF00652.22	gi|257053515|ref|YP_003131348.1|	-	3.1e-12	46.8	2.2	7.8e-12	45.6	2.1	1.7	1	1	0	1	1	1	1	Ricin-type	beta-trefoil	lectin	domain
Filamin	PF00630.19	gi|257053515|ref|YP_003131348.1|	-	0.051	14.4	0.1	4.2	8.2	0.0	2.6	1	1	1	2	2	2	0	Filamin/ABP280	repeat
DIPSY	PF11763.8	gi|257053515|ref|YP_003131348.1|	-	0.1	12.8	0.1	5.8	7.1	0.0	2.5	1	1	1	2	2	2	0	Cell-wall	adhesin	ligand-binding	C-terminal
Glyco_hydro_32N	PF00251.20	gi|257053515|ref|YP_003131348.1|	-	7.7	6.0	8.3	0.57	9.7	1.8	2.2	2	1	0	2	2	2	0	Glycosyl	hydrolases	family	32	N-terminal	domain
RicinB_lectin_2	PF14200.6	gi|257053516|ref|YP_003131349.1|	-	6.2e-40	135.8	11.5	8.6e-25	87.3	3.1	3.2	2	0	0	2	2	2	2	Ricin-type	beta-trefoil	lectin	domain-like
Beta_helix	PF13229.6	gi|257053516|ref|YP_003131349.1|	-	8.8e-17	61.4	52.1	1.6e-07	31.3	12.3	3.0	1	1	2	3	3	3	3	Right	handed	beta	helix	region
Ricin_B_lectin	PF00652.22	gi|257053516|ref|YP_003131349.1|	-	6.1e-14	52.4	2.7	3.7e-13	49.8	2.9	2.3	1	1	0	1	1	1	1	Ricin-type	beta-trefoil	lectin	domain
Inhibitor_I66	PF16850.5	gi|257053516|ref|YP_003131349.1|	-	0.021	14.7	0.3	5.5	6.8	0.1	3.2	2	1	0	2	2	2	0	Peptidase	inhibitor	I66
Calycin_like	PF13944.6	gi|257053516|ref|YP_003131349.1|	-	0.073	13.4	3.6	14	6.0	0.1	4.1	3	2	0	4	4	4	0	Calycin-like	beta-barrel	domain
Rhomboid	PF01694.22	gi|257053517|ref|YP_003131350.1|	-	3.4e-30	105.0	14.4	3.4e-30	105.0	14.4	1.6	2	0	0	2	2	2	1	Rhomboid	family
zf-AN1	PF01428.16	gi|257053517|ref|YP_003131350.1|	-	2.3e-12	46.8	8.5	3.3e-12	46.3	8.5	1.2	1	0	0	1	1	1	1	AN1-like	Zinc	finger
FYVE	PF01363.21	gi|257053517|ref|YP_003131350.1|	-	0.0047	17.0	1.3	0.0063	16.6	1.3	1.2	1	0	0	1	1	1	1	FYVE	zinc	finger
DUF1751	PF08551.10	gi|257053517|ref|YP_003131350.1|	-	0.017	15.7	0.1	0.017	15.7	0.1	2.2	3	0	0	3	3	3	0	Eukaryotic	integral	membrane	protein	(DUF1751)
C1_2	PF03107.16	gi|257053517|ref|YP_003131350.1|	-	0.26	11.7	4.8	0.4	11.0	4.8	1.3	1	0	0	1	1	1	0	C1	domain
zf-HIT	PF04438.16	gi|257053517|ref|YP_003131350.1|	-	0.36	10.8	3.2	0.51	10.3	3.2	1.2	1	0	0	1	1	1	0	HIT	zinc	finger
zf-C3HC4_2	PF13923.6	gi|257053517|ref|YP_003131350.1|	-	3.3	7.6	8.4	4.8	7.1	8.4	1.3	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
zf-C2H2_4	PF13894.6	gi|257053517|ref|YP_003131350.1|	-	6.4	7.9	8.0	3.1	8.9	3.8	2.3	2	0	0	2	2	2	0	C2H2-type	zinc	finger
Endonuclease_5	PF04493.14	gi|257053518|ref|YP_003131351.1|	-	3e-54	183.7	0.0	3.6e-54	183.5	0.0	1.1	1	0	0	1	1	1	1	Endonuclease	V
UvrC_HhH_N	PF08459.11	gi|257053518|ref|YP_003131351.1|	-	0.059	13.3	0.0	0.11	12.4	0.0	1.4	1	1	0	1	1	1	0	UvrC	Helix-hairpin-helix	N-terminal
Acetyltransf_1	PF00583.25	gi|257053518|ref|YP_003131351.1|	-	0.15	12.3	0.0	0.33	11.2	0.0	1.6	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	family
adh_short	PF00106.25	gi|257053519|ref|YP_003131352.1|	-	6.1e-52	175.9	0.0	7.3e-52	175.7	0.0	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.6	gi|257053519|ref|YP_003131352.1|	-	2e-41	142.1	0.1	2.8e-41	141.6	0.1	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.10	gi|257053519|ref|YP_003131352.1|	-	3.8e-11	43.2	0.0	5.8e-11	42.6	0.0	1.3	1	0	0	1	1	1	1	KR	domain
DUF1776	PF08643.10	gi|257053519|ref|YP_003131352.1|	-	1.1e-08	34.8	0.0	1.5e-08	34.4	0.0	1.1	1	0	0	1	1	1	1	Fungal	family	of	unknown	function	(DUF1776)
Epimerase	PF01370.21	gi|257053519|ref|YP_003131352.1|	-	5.8e-08	32.5	0.0	8.4e-07	28.7	0.0	2.4	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
RmlD_sub_bind	PF04321.17	gi|257053519|ref|YP_003131352.1|	-	0.03	13.4	0.8	0.041	13.0	0.1	1.6	2	0	0	2	2	2	0	RmlD	substrate	binding	domain
NmrA	PF05368.13	gi|257053519|ref|YP_003131352.1|	-	0.12	11.9	0.1	0.19	11.3	0.1	1.2	1	0	0	1	1	1	0	NmrA-like	family
DUF4147	PF13660.6	gi|257053520|ref|YP_003131353.1|	-	7.4e-75	251.4	0.6	1.2e-74	250.7	0.6	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4147)
MOFRL	PF05161.13	gi|257053520|ref|YP_003131353.1|	-	3.3e-30	104.5	2.7	7.6e-30	103.3	2.7	1.7	1	0	0	1	1	1	1	MOFRL	family
CMD	PF02627.20	gi|257053520|ref|YP_003131353.1|	-	0.11	12.6	0.2	0.11	12.6	0.2	2.3	2	0	0	2	2	2	0	Carboxymuconolactone	decarboxylase	family
TrmB	PF01978.19	gi|257053521|ref|YP_003131354.1|	-	2.6e-07	30.4	0.1	5.7e-07	29.3	0.1	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|257053521|ref|YP_003131354.1|	-	0.022	14.6	0.0	0.063	13.1	0.0	1.8	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_20	PF12840.7	gi|257053521|ref|YP_003131354.1|	-	0.047	13.7	0.2	0.2	11.7	0.0	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_27	PF13463.6	gi|257053521|ref|YP_003131354.1|	-	0.085	13.4	0.0	0.23	12.0	0.0	1.7	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
PSK_trans_fac	PF07704.11	gi|257053522|ref|YP_003131355.1|	-	0.0041	17.9	3.1	0.0099	16.6	3.1	1.6	1	1	0	1	1	1	1	Rv0623-like	transcription	factor
RHH_8	PF17723.1	gi|257053522|ref|YP_003131355.1|	-	0.035	14.3	0.3	0.041	14.1	0.3	1.2	1	0	0	1	1	1	0	Ribbon-Helix-Helix	transcriptional	regulator	family
PIN_9	PF18477.1	gi|257053523|ref|YP_003131356.1|	-	0.00063	20.0	0.1	0.00098	19.4	0.1	1.3	1	0	0	1	1	1	1	PIN	like	domain
NitrOD2	PF18550.1	gi|257053523|ref|YP_003131356.1|	-	0.06	13.5	0.2	0.11	12.6	0.2	1.5	1	0	0	1	1	1	0	Nitrososphaera	output	domain	2
PIN_4	PF13638.6	gi|257053523|ref|YP_003131356.1|	-	0.11	12.8	0.0	0.14	12.5	0.0	1.3	1	0	0	1	1	1	0	PIN	domain
adh_short	PF00106.25	gi|257053524|ref|YP_003131357.1|	-	8e-38	129.9	0.0	1.1e-37	129.4	0.0	1.2	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.6	gi|257053524|ref|YP_003131357.1|	-	2e-32	112.6	0.0	2.6e-32	112.3	0.0	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.10	gi|257053524|ref|YP_003131357.1|	-	3.8e-06	26.9	0.0	0.00058	19.8	0.0	2.1	2	0	0	2	2	2	2	KR	domain
Epimerase	PF01370.21	gi|257053524|ref|YP_003131357.1|	-	4.7e-05	23.0	0.0	6.6e-05	22.5	0.0	1.2	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
NAD_binding_10	PF13460.6	gi|257053524|ref|YP_003131357.1|	-	0.00014	21.8	0.1	0.00014	21.8	0.1	1.2	1	0	0	1	1	1	1	NAD(P)H-binding
ArsA_ATPase	PF02374.15	gi|257053525|ref|YP_003131358.1|	-	5.6e-80	268.8	0.0	8.5e-80	268.2	0.0	1.3	1	1	0	1	1	1	1	Anion-transporting	ATPase
CbiA	PF01656.23	gi|257053525|ref|YP_003131358.1|	-	7e-09	35.8	0.0	1.4e-08	34.9	0.0	1.5	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.6	gi|257053525|ref|YP_003131358.1|	-	2.1e-06	27.8	0.0	1.5e-05	25.0	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
ParA	PF10609.9	gi|257053525|ref|YP_003131358.1|	-	7.7e-05	22.2	0.2	0.0022	17.5	0.0	2.4	3	0	0	3	3	3	1	NUBPL	iron-transfer	P-loop	NTPase
SRP54	PF00448.22	gi|257053525|ref|YP_003131358.1|	-	0.0039	16.9	0.5	0.36	10.4	0.4	2.3	2	0	0	2	2	2	1	SRP54-type	protein,	GTPase	domain
ATPase	PF06745.13	gi|257053525|ref|YP_003131358.1|	-	0.0064	15.9	0.0	0.012	14.9	0.0	1.4	1	0	0	1	1	1	1	KaiC
PhoH	PF02562.16	gi|257053525|ref|YP_003131358.1|	-	0.0068	15.9	0.0	0.012	15.0	0.0	1.3	1	0	0	1	1	1	1	PhoH-like	protein
Fer4_NifH	PF00142.18	gi|257053525|ref|YP_003131358.1|	-	0.0084	15.6	0.0	0.016	14.6	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
AAA_25	PF13481.6	gi|257053525|ref|YP_003131358.1|	-	0.012	15.2	2.2	0.045	13.3	0.0	2.7	4	0	0	4	4	4	0	AAA	domain
CBP_BcsQ	PF06564.12	gi|257053525|ref|YP_003131358.1|	-	0.024	14.1	0.0	0.039	13.4	0.0	1.3	1	0	0	1	1	1	0	Cellulose	biosynthesis	protein	BcsQ
AAA_16	PF13191.6	gi|257053525|ref|YP_003131358.1|	-	0.054	13.9	0.2	0.15	12.4	0.2	1.9	1	1	0	1	1	1	0	AAA	ATPase	domain
IstB_IS21	PF01695.17	gi|257053525|ref|YP_003131358.1|	-	0.066	12.9	0.0	0.12	12.1	0.0	1.3	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
Beta_propel	PF09826.9	gi|257053526|ref|YP_003131359.1|	-	5.1e-92	309.4	0.0	1.3e-91	308.0	0.0	1.7	1	1	0	1	1	1	1	Beta	propeller	domain
LVIVD	PF08309.11	gi|257053526|ref|YP_003131359.1|	-	2.4e-06	26.7	0.5	2.4	7.5	0.0	4.5	4	0	0	4	4	4	4	LVIVD	repeat
Helicase_C_2	PF13307.6	gi|257053529|ref|YP_003131362.1|	-	2e-24	86.7	0.0	3e-24	86.1	0.0	1.3	1	0	0	1	1	1	1	Helicase	C-terminal	domain
DEAD_2	PF06733.15	gi|257053529|ref|YP_003131362.1|	-	7.5e-10	38.7	0.0	6.3e-08	32.4	0.0	2.1	2	0	0	2	2	2	1	DEAD_2
DEAD	PF00270.29	gi|257053529|ref|YP_003131362.1|	-	3.9e-09	36.5	0.0	7.7e-05	22.5	0.0	2.3	2	0	0	2	2	2	2	DEAD/DEAH	box	helicase
ResIII	PF04851.15	gi|257053529|ref|YP_003131362.1|	-	7.8e-09	35.8	0.0	7.1e-05	22.9	0.0	2.2	2	0	0	2	2	2	2	Type	III	restriction	enzyme,	res	subunit
PhoH	PF02562.16	gi|257053529|ref|YP_003131362.1|	-	3.6e-07	29.8	0.1	5.7e-05	22.7	0.0	2.2	2	0	0	2	2	2	1	PhoH-like	protein
AAA_30	PF13604.6	gi|257053529|ref|YP_003131362.1|	-	0.0002	21.1	3.5	0.0057	16.4	0.2	3.0	2	1	1	3	3	3	1	AAA	domain
AAA_22	PF13401.6	gi|257053529|ref|YP_003131362.1|	-	0.00023	21.4	0.0	0.2	11.9	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
AAA_19	PF13245.6	gi|257053529|ref|YP_003131362.1|	-	0.0018	18.6	0.0	0.023	15.0	0.0	2.3	1	1	0	1	1	1	1	AAA	domain
Mg_chelatase	PF01078.21	gi|257053529|ref|YP_003131362.1|	-	0.1	12.0	0.0	0.21	10.9	0.0	1.5	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
DUF2075	PF09848.9	gi|257053529|ref|YP_003131362.1|	-	0.11	11.7	0.0	10	5.2	0.0	2.2	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_11	PF13086.6	gi|257053529|ref|YP_003131362.1|	-	0.15	11.8	0.0	0.34	10.7	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
SWI2_SNF2	PF18766.1	gi|257053529|ref|YP_003131362.1|	-	0.16	11.7	0.0	6.3	6.4	0.0	2.2	2	0	0	2	2	2	0	SWI2/SNF2	ATPase
APH	PF01636.23	gi|257053530|ref|YP_003131363.1|	-	3.9e-22	79.4	0.7	5.8e-22	78.8	0.7	1.2	1	0	0	1	1	1	1	Phosphotransferase	enzyme	family
Fructosamin_kin	PF03881.14	gi|257053530|ref|YP_003131363.1|	-	0.0029	16.9	0.0	0.007	15.6	0.0	1.5	1	1	0	1	1	1	1	Fructosamine	kinase
CinA	PF02464.17	gi|257053531|ref|YP_003131364.1|	-	8.3e-57	191.1	0.1	9.4e-57	190.9	0.1	1.0	1	0	0	1	1	1	1	Competence-damaged	protein
DcrB	PF08786.11	gi|257053531|ref|YP_003131364.1|	-	0.19	11.8	0.0	0.31	11.1	0.0	1.3	1	0	0	1	1	1	0	DcrB
YdjM	PF04307.14	gi|257053532|ref|YP_003131365.1|	-	1.9e-12	46.9	2.4	3.2e-11	42.8	2.4	2.0	1	1	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
Tmemb_161AB	PF10268.9	gi|257053532|ref|YP_003131365.1|	-	0.091	11.4	0.0	0.12	11.0	0.0	1.1	1	0	0	1	1	1	0	Predicted	transmembrane	protein	161AB
Zn_dep_PLPC	PF00882.18	gi|257053532|ref|YP_003131365.1|	-	0.094	12.7	0.2	0.18	11.8	0.2	1.4	1	1	0	1	1	1	0	Zinc	dependent	phospholipase	C
PHP_C	PF13263.6	gi|257053533|ref|YP_003131366.1|	-	8.3e-16	57.5	0.1	1.6e-15	56.5	0.1	1.5	1	0	0	1	1	1	1	PHP-associated
zf-C2H2	PF00096.26	gi|257053534|ref|YP_003131367.1|	-	0.00028	21.2	0.1	0.047	14.2	0.0	2.5	2	0	0	2	2	2	2	Zinc	finger,	C2H2	type
zf-C2H2_4	PF13894.6	gi|257053534|ref|YP_003131367.1|	-	0.0053	17.5	0.1	1.6	9.8	0.0	2.5	2	0	0	2	2	2	2	C2H2-type	zinc	finger
Acetyltransf_1	PF00583.25	gi|257053535|ref|YP_003131368.1|	-	8.6e-09	35.7	0.0	1.5e-08	34.9	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|257053535|ref|YP_003131368.1|	-	0.00014	22.3	0.0	0.0002	21.7	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|257053535|ref|YP_003131368.1|	-	0.00032	20.7	0.0	0.00051	20.1	0.0	1.3	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Acetyltransf_10	PF13673.7	gi|257053535|ref|YP_003131368.1|	-	0.00033	20.6	0.0	0.00047	20.1	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.7	gi|257053535|ref|YP_003131368.1|	-	0.021	15.5	0.1	0.073	13.7	0.1	1.8	1	1	1	2	2	2	0	Acetyltransferase	(GNAT)	domain
ThiC_Rad_SAM	PF01964.18	gi|257053536|ref|YP_003131369.1|	-	2.1e-190	633.0	0.0	2.3e-190	632.8	0.0	1.0	1	0	0	1	1	1	1	Radical	SAM	ThiC	family
PIN	PF01850.21	gi|257053537|ref|YP_003131370.1|	-	2.4e-16	60.3	2.5	2.7e-16	60.2	2.5	1.0	1	0	0	1	1	1	1	PIN	domain
MazE_antitoxin	PF04014.18	gi|257053538|ref|YP_003131371.1|	-	0.0004	20.2	0.1	0.00068	19.5	0.1	1.3	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
PrlF_antitoxin	PF15937.5	gi|257053538|ref|YP_003131371.1|	-	0.0038	17.6	0.0	0.005	17.3	0.0	1.2	1	0	0	1	1	1	1	prlF	antitoxin	for	toxin	YhaV_toxin
Inhibitor_I53	PF11714.8	gi|257053538|ref|YP_003131371.1|	-	0.016	15.4	0.9	0.033	14.4	0.7	1.7	1	1	1	2	2	2	0	Thrombin	inhibitor	Madanin
DUF2237	PF09996.9	gi|257053539|ref|YP_003131372.1|	-	3.3e-48	162.4	0.0	3.9e-48	162.2	0.0	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2237)
tRNA_deacylase	PF04414.12	gi|257053540|ref|YP_003131373.1|	-	4.7e-61	205.9	0.0	6.1e-61	205.5	0.0	1.1	1	0	0	1	1	1	1	D-aminoacyl-tRNA	deacylase
Na_Ca_ex	PF01699.24	gi|257053541|ref|YP_003131374.1|	-	9.9e-18	64.5	27.9	5.7e-10	39.4	6.1	2.6	3	0	0	3	3	3	2	Sodium/calcium	exchanger	protein
SPC25	PF06703.11	gi|257053541|ref|YP_003131374.1|	-	5.1	6.9	6.3	3.6	7.4	1.7	2.7	3	0	0	3	3	3	0	Microsomal	signal	peptidase	25	kDa	subunit	(SPC25)
Shikimate_dh_N	PF08501.11	gi|257053542|ref|YP_003131375.1|	-	1.2e-26	92.8	0.0	3.8e-26	91.2	0.0	1.8	2	0	0	2	2	2	1	Shikimate	dehydrogenase	substrate	binding	domain
SDH_C	PF18317.1	gi|257053542|ref|YP_003131375.1|	-	6.2e-12	45.1	4.4	4.4e-11	42.3	0.9	2.5	2	0	0	2	2	2	1	Shikimate	5'-dehydrogenase	C-terminal	domain
Shikimate_DH	PF01488.20	gi|257053542|ref|YP_003131375.1|	-	2.3e-11	43.9	0.1	5e-11	42.8	0.1	1.5	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
adh_short	PF00106.25	gi|257053542|ref|YP_003131375.1|	-	0.00015	21.3	1.4	0.00033	20.2	1.4	1.6	1	1	0	1	1	1	1	short	chain	dehydrogenase
2-Hacid_dh_C	PF02826.19	gi|257053542|ref|YP_003131375.1|	-	0.00023	20.6	0.1	0.00036	19.9	0.1	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Sacchrp_dh_NADP	PF03435.18	gi|257053542|ref|YP_003131375.1|	-	0.00054	20.2	1.0	0.0021	18.3	1.0	2.0	1	1	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
IlvN	PF07991.12	gi|257053542|ref|YP_003131375.1|	-	0.0012	18.4	0.3	0.0026	17.3	0.1	1.6	2	0	0	2	2	2	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
F420_oxidored	PF03807.17	gi|257053542|ref|YP_003131375.1|	-	0.0016	18.9	1.4	0.0021	18.6	0.4	1.7	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
FAD_binding_2	PF00890.24	gi|257053542|ref|YP_003131375.1|	-	0.0036	16.4	2.2	0.0063	15.6	2.2	1.5	1	0	0	1	1	1	1	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|257053542|ref|YP_003131375.1|	-	0.0085	15.4	0.3	0.012	14.8	0.3	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_2	PF03446.15	gi|257053542|ref|YP_003131375.1|	-	0.023	14.9	0.1	0.039	14.1	0.1	1.5	1	0	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
AP_endonuc_2	PF01261.24	gi|257053542|ref|YP_003131375.1|	-	0.023	14.1	0.0	0.084	12.3	0.0	1.9	2	0	0	2	2	2	0	Xylose	isomerase-like	TIM	barrel
3HCDH_N	PF02737.18	gi|257053542|ref|YP_003131375.1|	-	0.065	13.1	0.8	0.11	12.4	0.8	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ApbA	PF02558.16	gi|257053542|ref|YP_003131375.1|	-	0.14	11.8	0.5	0.24	11.1	0.5	1.3	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
GIDA	PF01134.22	gi|257053542|ref|YP_003131375.1|	-	0.53	9.3	2.3	0.68	8.9	2.3	1.1	1	0	0	1	1	1	0	Glucose	inhibited	division	protein	A
HHH_5	PF14520.6	gi|257053543|ref|YP_003131376.1|	-	1.9e-10	41.2	0.1	3.3e-10	40.4	0.1	1.4	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
DUF4332	PF14229.6	gi|257053543|ref|YP_003131376.1|	-	0.0054	17.0	0.0	0.02	15.2	0.0	1.9	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4332)
Cdd1	PF11731.8	gi|257053543|ref|YP_003131376.1|	-	0.0098	16.1	0.0	0.016	15.5	0.0	1.3	1	0	0	1	1	1	1	Pathogenicity	locus
DNA_pol_lambd_f	PF10391.9	gi|257053543|ref|YP_003131376.1|	-	0.21	11.5	0.0	0.43	10.4	0.0	1.5	1	1	0	1	1	1	0	Fingers	domain	of	DNA	polymerase	lambda
SDA1	PF05285.12	gi|257053543|ref|YP_003131376.1|	-	0.26	10.7	17.1	0.32	10.4	17.1	1.2	1	0	0	1	1	1	0	SDA1
BUD22	PF09073.10	gi|257053543|ref|YP_003131376.1|	-	5.1	6.3	18.3	6.1	6.1	18.3	1.1	1	0	0	1	1	1	0	BUD22
Chorismate_bind	PF00425.18	gi|257053544|ref|YP_003131377.1|	-	1.4e-98	329.6	0.0	2e-98	329.1	0.0	1.2	1	0	0	1	1	1	1	chorismate	binding	enzyme
Anth_synt_I_N	PF04715.13	gi|257053544|ref|YP_003131377.1|	-	6.7e-10	39.3	0.0	2.3e-08	34.3	0.0	2.8	2	1	0	2	2	2	1	Anthranilate	synthase	component	I,	N	terminal	region
GATase	PF00117.28	gi|257053545|ref|YP_003131378.1|	-	7.9e-42	143.2	0.0	1.1e-41	142.7	0.0	1.2	1	1	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|257053545|ref|YP_003131378.1|	-	4.5e-07	29.9	1.0	1.1e-06	28.5	1.0	1.6	1	1	0	1	1	1	1	Peptidase	C26
UCR_Fe-S_N	PF10399.9	gi|257053546|ref|YP_003131379.1|	-	1.2	8.6	7.3	2.6	7.4	7.3	1.7	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
Aminotran_4	PF01063.19	gi|257053547|ref|YP_003131380.1|	-	3.2e-50	171.1	0.0	3.7e-50	170.9	0.0	1.0	1	0	0	1	1	1	1	Amino-transferase	class	IV
ADH_zinc_N	PF00107.26	gi|257053547|ref|YP_003131380.1|	-	0.019	14.9	0.0	0.031	14.3	0.0	1.2	1	0	0	1	1	1	0	Zinc-binding	dehydrogenase
ABC2_membrane	PF01061.24	gi|257053548|ref|YP_003131381.1|	-	9.6e-26	90.5	8.1	9.6e-26	90.5	8.1	1.5	2	0	0	2	2	2	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.7	gi|257053548|ref|YP_003131381.1|	-	2.4e-15	56.5	8.7	5.7e-15	55.3	0.3	2.0	1	1	1	2	2	2	2	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.7	gi|257053548|ref|YP_003131381.1|	-	1.1e-05	24.9	6.6	1.1e-05	24.9	6.6	1.9	1	1	0	2	2	2	1	ABC-2	family	transporter	protein
12TM_1	PF09847.9	gi|257053548|ref|YP_003131381.1|	-	4.2e-05	22.8	0.3	5.4e-05	22.5	0.3	1.1	1	0	0	1	1	1	1	Membrane	protein	of	12	TMs
DUF2678	PF10856.8	gi|257053548|ref|YP_003131381.1|	-	0.12	12.4	0.3	0.27	11.2	0.3	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2678)
Trep_Strep	PF09605.10	gi|257053548|ref|YP_003131381.1|	-	0.41	10.6	11.9	0.057	13.4	7.0	2.0	2	0	0	2	2	2	0	Hypothetical	bacterial	integral	membrane	protein	(Trep_Strep)
FA_desaturase	PF00487.24	gi|257053548|ref|YP_003131381.1|	-	6.7	6.5	9.7	0.27	11.0	2.3	2.1	1	1	1	2	2	2	0	Fatty	acid	desaturase
ABC_tran	PF00005.27	gi|257053549|ref|YP_003131382.1|	-	3.8e-27	95.5	0.0	6.6e-27	94.7	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|257053549|ref|YP_003131382.1|	-	1.2e-14	54.8	0.1	4.8e-08	33.2	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_15	PF13175.6	gi|257053549|ref|YP_003131382.1|	-	3e-05	23.9	0.0	0.14	11.9	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_23	PF13476.6	gi|257053549|ref|YP_003131382.1|	-	4.7e-05	24.0	0.0	6.5e-05	23.5	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
DUF4162	PF13732.6	gi|257053549|ref|YP_003131382.1|	-	0.0066	17.1	0.0	0.017	15.8	0.0	1.8	2	0	0	2	2	1	1	Domain	of	unknown	function	(DUF4162)
AAA_30	PF13604.6	gi|257053549|ref|YP_003131382.1|	-	0.0085	15.8	0.0	0.031	14.0	0.0	1.9	1	1	1	2	2	2	1	AAA	domain
AAA	PF00004.29	gi|257053549|ref|YP_003131382.1|	-	0.014	15.9	0.0	0.029	14.8	0.0	1.5	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.6	gi|257053549|ref|YP_003131382.1|	-	0.015	15.7	0.1	0.025	14.9	0.1	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
IstB_IS21	PF01695.17	gi|257053549|ref|YP_003131382.1|	-	0.015	15.0	0.0	0.33	10.7	0.0	2.2	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
SMC_N	PF02463.19	gi|257053549|ref|YP_003131382.1|	-	0.017	14.6	0.0	0.4	10.1	0.0	2.2	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|257053549|ref|YP_003131382.1|	-	0.017	14.9	0.1	0.034	13.9	0.1	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_33	PF13671.6	gi|257053549|ref|YP_003131382.1|	-	0.028	14.6	0.0	0.14	12.3	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_28	PF13521.6	gi|257053549|ref|YP_003131382.1|	-	0.035	14.3	0.0	0.059	13.6	0.0	1.4	1	1	0	1	1	1	0	AAA	domain
MMR_HSR1	PF01926.23	gi|257053549|ref|YP_003131382.1|	-	0.054	13.6	0.1	0.34	11.0	0.0	2.1	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
TsaE	PF02367.17	gi|257053549|ref|YP_003131382.1|	-	0.082	12.9	0.0	0.14	12.2	0.0	1.3	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
NB-ARC	PF00931.22	gi|257053549|ref|YP_003131382.1|	-	0.082	12.1	0.0	0.14	11.4	0.0	1.2	1	0	0	1	1	1	0	NB-ARC	domain
AAA_22	PF13401.6	gi|257053549|ref|YP_003131382.1|	-	0.1	12.9	0.1	0.17	12.1	0.1	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_18	PF13238.6	gi|257053549|ref|YP_003131382.1|	-	0.13	12.9	0.1	1.1	9.8	0.1	2.1	2	0	0	2	2	2	0	AAA	domain
cobW	PF02492.19	gi|257053549|ref|YP_003131382.1|	-	0.13	11.9	0.0	0.24	11.0	0.0	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
Zeta_toxin	PF06414.12	gi|257053549|ref|YP_003131382.1|	-	0.18	11.0	0.0	0.31	10.3	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
AAA_13	PF13166.6	gi|257053549|ref|YP_003131382.1|	-	0.19	10.4	0.1	0.26	9.9	0.1	1.1	1	0	0	1	1	1	0	AAA	domain
AAA_27	PF13514.6	gi|257053549|ref|YP_003131382.1|	-	0.2	11.2	0.1	0.42	10.2	0.0	1.5	2	0	0	2	2	2	0	AAA	domain
UbiA	PF01040.18	gi|257053551|ref|YP_003131384.1|	-	2e-54	184.6	25.2	2e-54	184.6	25.2	2.5	2	1	0	2	2	2	1	UbiA	prenyltransferase	family
COX15-CtaA	PF02628.15	gi|257053551|ref|YP_003131384.1|	-	2.2e-06	27.0	7.2	2.2e-06	27.0	7.2	4.1	3	1	1	4	4	4	2	Cytochrome	oxidase	assembly	protein
PAS_4	PF08448.10	gi|257053552|ref|YP_003131385.1|	-	2.9e-26	91.9	7.4	1.1e-21	77.2	0.5	3.0	3	0	0	3	3	3	2	PAS	fold
PAS	PF00989.25	gi|257053552|ref|YP_003131385.1|	-	9.2e-17	61.1	0.0	9.7e-10	38.4	0.0	2.8	3	0	0	3	3	3	2	PAS	fold
PAS_9	PF13426.7	gi|257053552|ref|YP_003131385.1|	-	1.2e-13	51.1	0.0	3.7e-06	27.1	0.0	2.7	3	0	0	3	3	3	2	PAS	domain
PAS_8	PF13188.7	gi|257053552|ref|YP_003131385.1|	-	5.3e-12	45.5	0.2	0.00015	21.7	0.0	2.7	2	0	0	2	2	2	2	PAS	domain
HATPase_c	PF02518.26	gi|257053552|ref|YP_003131385.1|	-	1.4e-09	38.4	0.0	3.2e-09	37.3	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.6	gi|257053552|ref|YP_003131385.1|	-	2.3e-08	34.0	0.9	1.2e-07	31.7	0.0	2.5	2	1	1	3	3	3	1	Histidine	kinase-like	ATPase	domain
Response_reg	PF00072.24	gi|257053552|ref|YP_003131385.1|	-	1.3e-07	31.7	0.2	4e-07	30.2	0.0	1.9	2	0	0	2	2	2	1	Response	regulator	receiver	domain
PAS_10	PF13596.6	gi|257053552|ref|YP_003131385.1|	-	0.00012	22.6	0.0	0.00063	20.3	0.0	2.1	1	1	1	2	2	2	1	PAS	domain
PAS_7	PF12860.7	gi|257053552|ref|YP_003131385.1|	-	0.00068	19.8	0.2	0.31	11.2	0.0	3.6	3	3	0	3	3	3	1	PAS	fold
OKR_DC_1_N	PF03709.15	gi|257053552|ref|YP_003131385.1|	-	0.0011	19.2	0.0	0.0027	18.0	0.0	1.6	1	0	0	1	1	1	1	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
HisKA_4TM	PF16926.5	gi|257053552|ref|YP_003131385.1|	-	0.016	14.8	0.1	0.042	13.4	0.1	1.7	1	0	0	1	1	1	0	Archaeal	4TM	region	of	histidine	kinase
COX2	PF00116.20	gi|257053553|ref|YP_003131386.1|	-	1.3e-18	67.0	0.0	3.7e-18	65.5	0.0	1.7	1	1	1	2	2	2	1	Cytochrome	C	oxidase	subunit	II,	periplasmic	domain
COX2_TM	PF02790.15	gi|257053553|ref|YP_003131386.1|	-	2.8e-12	46.6	0.4	4.6e-12	45.9	0.4	1.3	1	0	0	1	1	1	1	Cytochrome	C	oxidase	subunit	II,	transmembrane	domain
Cupredoxin_1	PF13473.6	gi|257053553|ref|YP_003131386.1|	-	0.00045	20.3	0.0	0.00085	19.4	0.0	1.5	1	0	0	1	1	1	1	Cupredoxin-like	domain
DUF5336	PF17270.2	gi|257053553|ref|YP_003131386.1|	-	0.093	12.4	2.2	0.14	11.8	0.9	1.8	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5336)
Myelin_PLP	PF01275.19	gi|257053553|ref|YP_003131386.1|	-	3.8	7.3	4.9	8.2	6.2	0.0	2.7	3	1	1	4	4	4	0	Myelin	proteolipid	protein	(PLP	or	lipophilin)
MaoC_dehydratas	PF01575.19	gi|257053554|ref|YP_003131387.1|	-	3.9e-17	62.0	0.0	4.9e-17	61.6	0.0	1.1	1	0	0	1	1	1	1	MaoC	like	domain
MaoC_dehydrat_N	PF13452.6	gi|257053554|ref|YP_003131387.1|	-	6.9e-05	23.0	0.0	0.00014	22.0	0.0	1.4	1	1	0	1	1	1	1	N-terminal	half	of	MaoC	dehydratase
4HBT_2	PF13279.6	gi|257053554|ref|YP_003131387.1|	-	0.12	12.8	0.0	0.2	12.1	0.0	1.3	1	1	0	1	1	1	0	Thioesterase-like	superfamily
OrfB_Zn_ribbon	PF07282.11	gi|257053555|ref|YP_003131388.1|	-	1.4e-22	79.3	0.7	3.5e-22	78.1	0.7	1.7	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|257053555|ref|YP_003131388.1|	-	0.00043	20.5	0.0	0.00086	19.5	0.0	1.5	1	0	0	1	1	1	1	Probable	transposase
zf-HC5HC2H_2	PF13832.6	gi|257053555|ref|YP_003131388.1|	-	0.022	14.9	0.6	0.38	10.9	0.3	2.2	2	0	0	2	2	2	0	PHD-zinc-finger	like	domain
HypA	PF01155.19	gi|257053555|ref|YP_003131388.1|	-	0.042	13.9	0.1	0.08	13.0	0.1	1.4	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
C1_2	PF03107.16	gi|257053555|ref|YP_003131388.1|	-	0.053	13.8	1.2	0.11	12.9	1.2	1.5	1	0	0	1	1	1	0	C1	domain
PHD	PF00628.29	gi|257053555|ref|YP_003131388.1|	-	2.1	8.3	8.6	0.46	10.4	1.3	2.7	3	0	0	3	3	3	0	PHD-finger
zinc_ribbon_2	PF13240.6	gi|257053555|ref|YP_003131388.1|	-	2.2	8.1	5.8	1	9.2	3.1	1.9	2	0	0	2	2	2	0	zinc-ribbon	domain
ABC_tran	PF00005.27	gi|257053556|ref|YP_003131389.1|	-	4.4e-29	101.8	0.0	9.4e-29	100.7	0.0	1.6	2	0	0	2	2	1	1	ABC	transporter
AAA_21	PF13304.6	gi|257053556|ref|YP_003131389.1|	-	1.6e-08	34.7	0.5	0.00074	19.4	0.2	2.2	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_16	PF13191.6	gi|257053556|ref|YP_003131389.1|	-	0.00067	20.1	0.7	0.0014	19.0	0.3	1.8	2	1	0	2	2	2	1	AAA	ATPase	domain
SMC_N	PF02463.19	gi|257053556|ref|YP_003131389.1|	-	0.0011	18.5	0.0	0.0035	16.8	0.0	1.7	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|257053556|ref|YP_003131389.1|	-	0.0017	18.0	0.1	0.0036	17.0	0.1	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
Zeta_toxin	PF06414.12	gi|257053556|ref|YP_003131389.1|	-	0.0024	17.2	0.0	0.0047	16.2	0.0	1.4	1	0	0	1	1	1	1	Zeta	toxin
AAA_23	PF13476.6	gi|257053556|ref|YP_003131389.1|	-	0.0041	17.6	0.0	0.0057	17.2	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|257053556|ref|YP_003131389.1|	-	0.04	13.6	0.2	0.04	13.6	0.2	2.6	2	1	1	3	3	3	0	AAA	domain
MukB	PF04310.12	gi|257053556|ref|YP_003131389.1|	-	0.055	13.3	0.1	0.12	12.2	0.1	1.5	1	0	0	1	1	1	0	MukB	N-terminal
Mg_chelatase	PF01078.21	gi|257053556|ref|YP_003131389.1|	-	0.059	12.8	0.0	0.1	11.9	0.0	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
cobW	PF02492.19	gi|257053556|ref|YP_003131389.1|	-	0.074	12.6	0.1	0.13	11.8	0.1	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_33	PF13671.6	gi|257053556|ref|YP_003131389.1|	-	0.081	13.1	1.4	0.59	10.3	0.8	2.4	2	1	0	2	2	2	0	AAA	domain
AAA_22	PF13401.6	gi|257053556|ref|YP_003131389.1|	-	0.14	12.4	0.4	0.38	11.0	0.0	1.9	2	1	0	2	2	2	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|257053556|ref|YP_003131389.1|	-	0.17	11.8	0.0	0.33	10.9	0.0	1.4	1	0	0	1	1	1	0	RsgA	GTPase
NB-ARC	PF00931.22	gi|257053556|ref|YP_003131389.1|	-	0.22	10.7	0.0	0.34	10.0	0.0	1.2	1	0	0	1	1	1	0	NB-ARC	domain
DUF3584	PF12128.8	gi|257053556|ref|YP_003131389.1|	-	0.31	8.5	0.2	0.42	8.1	0.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
AAA_13	PF13166.6	gi|257053556|ref|YP_003131389.1|	-	0.31	9.6	0.0	13	4.3	0.1	2.0	2	0	0	2	2	2	0	AAA	domain
FecCD	PF01032.18	gi|257053557|ref|YP_003131390.1|	-	3.5e-90	302.2	25.1	3.5e-90	302.2	25.1	1.4	2	0	0	2	2	2	1	FecCD	transport	family
ABC-3	PF00950.17	gi|257053557|ref|YP_003131390.1|	-	1.2e-05	25.0	15.2	1.2e-05	25.0	15.2	1.6	2	0	0	2	2	2	1	ABC	3	transport	family
ETRAMP	PF09716.10	gi|257053557|ref|YP_003131390.1|	-	0.31	11.1	1.5	1.1	9.4	1.5	1.9	1	0	0	1	1	1	0	Malarial	early	transcribed	membrane	protein	(ETRAMP)
Peripla_BP_2	PF01497.18	gi|257053558|ref|YP_003131391.1|	-	2.1e-29	102.8	2.1	2.1e-29	102.8	2.1	2.0	2	0	0	2	2	2	1	Periplasmic	binding	protein
PGF-CTERM	PF18204.1	gi|257053558|ref|YP_003131391.1|	-	0.0013	18.6	2.6	0.0013	18.6	2.6	2.5	2	0	0	2	2	2	1	PGF-CTERM	motif
Nitro_FeMo-Co	PF02579.17	gi|257053558|ref|YP_003131391.1|	-	0.14	12.5	0.0	0.37	11.2	0.0	1.7	1	0	0	1	1	1	0	Dinitrogenase	iron-molybdenum	cofactor
X	PF00739.19	gi|257053558|ref|YP_003131391.1|	-	8.3	6.5	7.5	2	8.5	2.7	2.3	2	1	0	2	2	2	0	Trans-activation	protein	X
CobD_Cbib	PF03186.13	gi|257053559|ref|YP_003131392.1|	-	4.5e-77	259.0	7.9	5.6e-77	258.7	7.9	1.1	1	0	0	1	1	1	1	CobD/Cbib	protein
CobS	PF02654.15	gi|257053560|ref|YP_003131393.1|	-	1.7e-37	129.6	20.3	2e-37	129.4	20.3	1.0	1	0	0	1	1	1	1	Cobalamin-5-phosphate	synthase
SecE	PF00584.20	gi|257053560|ref|YP_003131393.1|	-	2.4	8.1	4.7	12	5.9	0.3	2.6	2	0	0	2	2	2	0	SecE/Sec61-gamma	subunits	of	protein	translocation	complex
NTP_transf_3	PF12804.7	gi|257053561|ref|YP_003131394.1|	-	1.2e-17	64.7	1.1	1.8e-17	64.2	0.8	1.2	1	1	0	1	1	1	1	MobA-like	NTP	transferase	domain
NTP_transferase	PF00483.23	gi|257053561|ref|YP_003131394.1|	-	0.00053	19.6	0.0	0.00067	19.3	0.0	1.2	1	0	0	1	1	1	1	Nucleotidyl	transferase
IspD	PF01128.19	gi|257053561|ref|YP_003131394.1|	-	0.0008	19.2	0.1	0.0026	17.5	0.0	1.8	1	1	0	2	2	2	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
CTP_transf_3	PF02348.19	gi|257053561|ref|YP_003131394.1|	-	0.12	12.2	0.0	9.1	6.1	0.0	2.0	2	0	0	2	2	2	0	Cytidylyltransferase
Aminotran_1_2	PF00155.21	gi|257053563|ref|YP_003131396.1|	-	3.3e-36	125.2	0.0	3.9e-36	125.0	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
DegT_DnrJ_EryC1	PF01041.17	gi|257053563|ref|YP_003131396.1|	-	0.0024	17.3	0.0	0.0035	16.7	0.0	1.2	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
CbiZ	PF01955.18	gi|257053564|ref|YP_003131397.1|	-	2.8e-42	145.0	0.6	3.3e-42	144.8	0.6	1.1	1	0	0	1	1	1	1	Adenosylcobinamide	amidohydrolase
CobA_CobO_BtuR	PF02572.15	gi|257053565|ref|YP_003131398.1|	-	2.4e-46	158.1	0.0	2.9e-46	157.8	0.0	1.1	1	0	0	1	1	1	1	ATP:corrinoid	adenosyltransferase	BtuR/CobO/CobP
SatD	PF16264.5	gi|257053567|ref|YP_003131400.1|	-	2.4e-13	50.2	0.0	3.3e-13	49.7	0.0	1.1	1	0	0	1	1	1	1	SatD	family	(SatD)
Sigma70_r4	PF04545.16	gi|257053567|ref|YP_003131400.1|	-	0.00078	18.9	0.4	0.015	14.8	0.0	2.5	2	0	0	2	2	2	1	Sigma-70,	region	4
MarR_2	PF12802.7	gi|257053567|ref|YP_003131400.1|	-	0.0017	18.2	0.2	0.0039	17.0	0.2	1.6	1	0	0	1	1	1	1	MarR	family
HTH_23	PF13384.6	gi|257053567|ref|YP_003131400.1|	-	0.0033	17.2	1.5	0.0048	16.7	0.2	2.0	2	0	0	2	2	2	1	Homeodomain-like	domain
Sigma70_r4_2	PF08281.12	gi|257053567|ref|YP_003131400.1|	-	0.0046	16.6	1.2	0.016	14.9	0.3	2.3	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_1	PF00126.27	gi|257053567|ref|YP_003131400.1|	-	0.0054	16.6	0.4	0.013	15.4	0.4	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_29	PF13551.6	gi|257053567|ref|YP_003131400.1|	-	0.042	13.9	0.2	0.11	12.5	0.2	1.7	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_Crp_2	PF13545.6	gi|257053567|ref|YP_003131400.1|	-	0.043	13.8	0.1	0.13	12.2	0.1	1.9	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
UPF0122	PF04297.14	gi|257053567|ref|YP_003131400.1|	-	0.044	14.0	0.0	0.074	13.3	0.0	1.3	1	0	0	1	1	1	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
HTH_30	PF13556.6	gi|257053567|ref|YP_003131400.1|	-	0.057	13.2	0.3	0.057	13.2	0.3	2.5	3	0	0	3	3	2	0	PucR	C-terminal	helix-turn-helix	domain
HTH_28	PF13518.6	gi|257053567|ref|YP_003131400.1|	-	0.099	12.8	0.4	0.27	11.4	0.4	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
YdaS_antitoxin	PF15943.5	gi|257053567|ref|YP_003131400.1|	-	0.1	12.5	0.1	0.3	11.0	0.1	1.8	2	0	0	2	2	2	0	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
HTH_10	PF04967.12	gi|257053567|ref|YP_003131400.1|	-	0.1	12.4	0.2	0.51	10.2	0.2	2.2	1	1	0	1	1	1	0	HTH	DNA	binding	domain
LZ_Tnp_IS481	PF13011.6	gi|257053567|ref|YP_003131400.1|	-	0.12	12.9	0.2	0.29	11.7	0.2	1.6	1	0	0	1	1	1	0	leucine-zipper	of	insertion	element	IS481
GATase_3	PF07685.14	gi|257053568|ref|YP_003131401.1|	-	1.1e-38	132.9	0.0	1.6e-38	132.3	0.0	1.3	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
CbiA	PF01656.23	gi|257053568|ref|YP_003131401.1|	-	1.7e-20	73.4	0.0	2.6e-20	72.8	0.0	1.3	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_26	PF13500.6	gi|257053568|ref|YP_003131401.1|	-	7.2e-18	65.1	0.0	5.9e-11	42.6	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
NTPase_1	PF03266.15	gi|257053568|ref|YP_003131401.1|	-	0.0011	18.9	0.0	0.0021	18.0	0.0	1.4	1	0	0	1	1	1	1	NTPase
DUF1611	PF07755.11	gi|257053568|ref|YP_003131401.1|	-	0.0019	17.5	0.0	1.4	8.1	0.1	3.1	3	0	0	3	3	3	2	Domain	of	unknown	function	(DUF1611_C)	P-loop	domain
SRP19	PF01922.17	gi|257053569|ref|YP_003131402.1|	-	8.5e-24	84.3	0.0	9.7e-24	84.1	0.0	1.1	1	0	0	1	1	1	1	SRP19	protein
Gar1	PF04410.14	gi|257053570|ref|YP_003131403.1|	-	1.5e-07	31.3	0.0	1.5e-07	31.3	0.0	1.0	1	0	0	1	1	1	1	Gar1/Naf1	RNA	binding	region
SPP	PF06550.11	gi|257053571|ref|YP_003131404.1|	-	3.1e-88	295.9	23.5	7.9e-88	294.6	23.5	1.6	1	1	0	1	1	1	1	Signal-peptide	peptidase,	presenilin	aspartyl	protease
Peptidase_A22B	PF04258.13	gi|257053571|ref|YP_003131404.1|	-	3.6e-06	26.7	3.3	0.0012	18.5	0.2	2.9	3	0	0	3	3	3	2	Signal	peptide	peptidase
Presenilin	PF01080.17	gi|257053571|ref|YP_003131404.1|	-	0.00012	21.0	12.1	0.016	14.0	0.0	2.8	2	1	0	2	2	2	2	Presenilin
MatC_N	PF07158.11	gi|257053572|ref|YP_003131405.1|	-	0.0023	18.0	0.4	0.0024	17.9	0.4	1.1	1	0	0	1	1	1	1	Dicarboxylate	carrier	protein	MatC	N-terminus
DUF5326	PF17260.2	gi|257053572|ref|YP_003131405.1|	-	0.054	13.6	0.5	0.066	13.4	0.5	1.1	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5326)
DUF2206	PF09971.9	gi|257053572|ref|YP_003131405.1|	-	0.2	10.3	0.2	0.21	10.3	0.2	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2206)
DUF3054	PF11255.8	gi|257053573|ref|YP_003131406.1|	-	1.8e-20	73.5	11.3	2.2e-20	73.2	11.3	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3054)
CoA_binding_3	PF13727.6	gi|257053573|ref|YP_003131406.1|	-	0.0002	21.4	3.8	0.00034	20.7	3.8	1.3	1	0	0	1	1	1	1	CoA-binding	domain
DUF3397	PF11877.8	gi|257053573|ref|YP_003131406.1|	-	0.21	11.8	3.7	0.091	13.0	1.4	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3397)
CPP1-like	PF11833.8	gi|257053573|ref|YP_003131406.1|	-	1	9.0	5.7	1.5	8.5	5.4	1.5	1	1	0	1	1	1	0	Protein	CHAPERONE-LIKE	PROTEIN	OF	POR1-like
DUF5337	PF17272.2	gi|257053573|ref|YP_003131406.1|	-	1.6	8.6	8.2	2.3	8.1	0.2	3.2	2	1	1	3	3	3	0	Family	of	unknown	function	(DUF5337)
Acetyltransf_1	PF00583.25	gi|257053575|ref|YP_003131408.1|	-	3e-10	40.4	0.1	4.1e-10	39.9	0.1	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_CG	PF14542.6	gi|257053575|ref|YP_003131408.1|	-	6.6e-06	26.2	0.1	1.3e-05	25.3	0.1	1.4	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Acetyltransf_10	PF13673.7	gi|257053575|ref|YP_003131408.1|	-	1.7e-05	24.8	0.0	2.5e-05	24.2	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|257053575|ref|YP_003131408.1|	-	3.2e-05	24.3	0.1	4.6e-05	23.8	0.1	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_6	PF13480.7	gi|257053575|ref|YP_003131408.1|	-	0.0072	16.5	1.1	0.0081	16.3	0.1	1.6	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|257053575|ref|YP_003131408.1|	-	0.016	15.2	0.1	0.032	14.2	0.1	1.6	1	1	0	1	1	1	0	FR47-like	protein
XPG_I	PF00867.18	gi|257053576|ref|YP_003131409.1|	-	7.6e-22	77.5	0.0	1.3e-21	76.7	0.0	1.4	1	0	0	1	1	1	1	XPG	I-region
XPG_N	PF00752.17	gi|257053576|ref|YP_003131409.1|	-	1.4e-13	51.2	0.0	2.4e-13	50.4	0.0	1.4	1	0	0	1	1	1	1	XPG	N-terminal	domain
5_3_exonuc	PF01367.20	gi|257053576|ref|YP_003131409.1|	-	0.00065	20.3	0.0	0.0016	19.0	0.0	1.6	1	0	0	1	1	1	1	5'-3'	exonuclease,	C-terminal	SAM	fold
5_3_exonuc_N	PF02739.16	gi|257053576|ref|YP_003131409.1|	-	0.011	15.6	0.1	0.017	15.0	0.1	1.3	1	0	0	1	1	1	0	5'-3'	exonuclease,	N-terminal	resolvase-like	domain
CorA	PF01544.18	gi|257053576|ref|YP_003131409.1|	-	0.037	13.3	0.9	0.056	12.7	0.9	1.2	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
Oxidored_molyb	PF00174.19	gi|257053577|ref|YP_003131410.1|	-	7.6e-35	120.1	0.0	1.2e-34	119.4	0.0	1.3	1	0	0	1	1	1	1	Oxidoreductase	molybdopterin	binding	domain
Mo-co_dimer	PF03404.16	gi|257053577|ref|YP_003131410.1|	-	1.7e-07	31.3	0.3	4.9e-07	29.8	0.2	1.8	1	1	0	1	1	1	1	Mo-co	oxidoreductase	dimerisation	domain
Ribosomal_S2	PF00318.20	gi|257053578|ref|YP_003131411.1|	-	6.1e-23	81.2	0.1	2.6e-13	49.7	0.5	2.1	2	0	0	2	2	2	2	Ribosomal	protein	S2
Enolase_C	PF00113.22	gi|257053579|ref|YP_003131412.1|	-	1.9e-77	260.4	0.5	2.6e-77	260.0	0.5	1.1	1	0	0	1	1	1	1	Enolase,	C-terminal	TIM	barrel	domain
Enolase_N	PF03952.16	gi|257053579|ref|YP_003131412.1|	-	3.8e-36	124.2	0.5	1.8e-35	122.0	0.5	2.2	1	1	0	1	1	1	1	Enolase,	N-terminal	domain
MR_MLE_C	PF13378.6	gi|257053579|ref|YP_003131412.1|	-	1.7e-09	37.6	0.0	3.7e-09	36.5	0.0	1.5	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MAAL_C	PF07476.11	gi|257053579|ref|YP_003131412.1|	-	0.0018	17.5	0.1	0.0018	17.5	0.1	1.6	2	0	0	2	2	2	1	Methylaspartate	ammonia-lyase	C-terminus
RNA_pol_Rpb6	PF01192.22	gi|257053580|ref|YP_003131413.1|	-	1e-10	41.3	0.1	1.1e-10	41.2	0.1	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb6
RNA_pol_N	PF01194.17	gi|257053581|ref|YP_003131414.1|	-	2.5e-28	98.1	0.2	2.8e-28	98.0	0.2	1.0	1	0	0	1	1	1	1	RNA	polymerases	N	/	8	kDa	subunit
Ribosomal_S9	PF00380.19	gi|257053582|ref|YP_003131415.1|	-	1.4e-31	109.5	0.0	1.6e-31	109.3	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S9/S16
Ribosomal_L13	PF00572.18	gi|257053583|ref|YP_003131416.1|	-	1.5e-08	34.9	0.1	4.3e-06	27.0	0.1	2.4	1	1	0	1	1	1	1	Ribosomal	protein	L13
Ribosomal_L18	PF17135.4	gi|257053584|ref|YP_003131417.1|	-	8.6e-07	28.5	0.0	9.2e-07	28.4	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	60S	L18	and	50S	L18e
Ribosomal_L27A	PF00828.19	gi|257053584|ref|YP_003131417.1|	-	1.9e-05	25.3	0.1	6.1e-05	23.7	0.1	1.7	1	1	0	1	1	1	1	Ribosomal	proteins	50S-L15,	50S-L18e,	60S-L27A
RNA_pol_A_bac	PF01000.26	gi|257053585|ref|YP_003131418.1|	-	5.3e-20	71.9	0.0	1.5e-18	67.2	0.0	2.7	2	1	0	2	2	2	1	RNA	polymerase	Rpb3/RpoA	insert	domain
RNA_pol_L	PF01193.24	gi|257053585|ref|YP_003131418.1|	-	3e-13	49.0	0.0	3.9e-13	48.6	0.0	1.2	1	0	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
Ribosomal_S11	PF00411.19	gi|257053586|ref|YP_003131419.1|	-	1.6e-49	166.9	1.8	2e-49	166.6	1.8	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S11
Ribosomal_L18p	PF00861.22	gi|257053586|ref|YP_003131419.1|	-	0.0091	16.4	0.1	0.012	16.0	0.1	1.2	1	0	0	1	1	1	1	Ribosomal	L18	of	archaea,	bacteria,	mitoch.	and	chloroplast
Pilus_CpaD	PF09476.10	gi|257053586|ref|YP_003131419.1|	-	0.014	15.1	0.5	0.017	14.9	0.5	1.2	1	0	0	1	1	1	0	Pilus	biogenesis	CpaD	protein	(pilus_cpaD)
S4	PF01479.25	gi|257053587|ref|YP_003131420.1|	-	2.5e-17	62.3	0.6	3e-16	58.9	0.0	2.2	2	0	0	2	2	2	1	S4	domain
Ribosomal_S4	PF00163.19	gi|257053587|ref|YP_003131420.1|	-	0.00037	21.3	0.6	0.00056	20.8	0.6	1.5	1	1	0	1	1	1	1	Ribosomal	protein	S4/S9	N-terminal	domain
S4_2	PF13275.6	gi|257053587|ref|YP_003131420.1|	-	0.069	13.0	0.0	0.15	11.9	0.0	1.5	1	0	0	1	1	1	0	S4	domain
Ribosomal_S13	PF00416.22	gi|257053588|ref|YP_003131421.1|	-	3e-44	150.5	5.0	3.6e-44	150.2	5.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S13/S18
FbpA	PF05833.11	gi|257053588|ref|YP_003131421.1|	-	0.024	13.4	0.0	0.024	13.4	0.0	1.2	1	0	0	1	1	1	0	Fibronectin-binding	protein	A	N-terminus	(FbpA)
DUF1129	PF06570.11	gi|257053589|ref|YP_003131422.1|	-	0.008	15.7	3.6	0.011	15.2	3.6	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1129)
Protocadherin	PF08374.11	gi|257053589|ref|YP_003131422.1|	-	0.4	10.6	0.4	26	4.7	0.0	2.2	2	0	0	2	2	2	0	Protocadherin
adh_short	PF00106.25	gi|257053590|ref|YP_003131423.1|	-	9.9e-40	136.1	0.0	1.4e-39	135.6	0.0	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.6	gi|257053590|ref|YP_003131423.1|	-	2e-34	119.2	0.0	2.4e-34	118.9	0.0	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.10	gi|257053590|ref|YP_003131423.1|	-	3.8e-10	40.0	0.0	2.2e-07	31.0	0.0	2.2	2	0	0	2	2	2	2	KR	domain
Epimerase	PF01370.21	gi|257053590|ref|YP_003131423.1|	-	0.00015	21.4	0.0	0.00021	20.8	0.0	1.3	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
RmlD_sub_bind	PF04321.17	gi|257053590|ref|YP_003131423.1|	-	0.00024	20.3	0.0	0.00034	19.8	0.0	1.2	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
TrkA_N	PF02254.18	gi|257053590|ref|YP_003131423.1|	-	0.096	12.9	0.0	0.17	12.1	0.0	1.4	1	0	0	1	1	1	0	TrkA-N	domain
ADC	PF06314.11	gi|257053591|ref|YP_003131424.1|	-	5.9e-19	68.6	0.1	1e-18	67.8	0.1	1.4	1	1	0	1	1	1	1	Acetoacetate	decarboxylase	(ADC)
ParA	PF10609.9	gi|257053592|ref|YP_003131425.1|	-	1.8e-102	342.0	0.0	2.3e-102	341.7	0.0	1.1	1	0	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
CbiA	PF01656.23	gi|257053592|ref|YP_003131425.1|	-	5.3e-16	58.8	0.0	4.8e-15	55.8	0.0	2.1	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.6	gi|257053592|ref|YP_003131425.1|	-	1.1e-11	44.9	0.1	3.4e-10	40.1	0.1	2.1	1	1	0	1	1	1	1	AAA	domain
FeS_assembly_P	PF01883.19	gi|257053592|ref|YP_003131425.1|	-	6.2e-11	42.3	0.6	1.4e-10	41.2	0.6	1.6	1	0	0	1	1	1	1	Iron-sulfur	cluster	assembly	protein
MipZ	PF09140.11	gi|257053592|ref|YP_003131425.1|	-	5.8e-09	35.6	0.0	9.1e-09	35.0	0.0	1.3	1	0	0	1	1	1	1	ATPase	MipZ
Fer4_NifH	PF00142.18	gi|257053592|ref|YP_003131425.1|	-	4.1e-07	29.7	0.0	0.00019	21.0	0.1	2.2	2	0	0	2	2	2	2	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
VirC1	PF07015.11	gi|257053592|ref|YP_003131425.1|	-	7.3e-06	25.4	0.0	1.1e-05	24.9	0.0	1.2	1	0	0	1	1	1	1	VirC1	protein
ArsA_ATPase	PF02374.15	gi|257053592|ref|YP_003131425.1|	-	7.4e-06	25.4	1.5	0.00061	19.1	0.2	2.1	2	0	0	2	2	2	2	Anion-transporting	ATPase
AAA_26	PF13500.6	gi|257053592|ref|YP_003131425.1|	-	0.00041	20.2	0.0	0.64	9.8	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
MeaB	PF03308.16	gi|257053592|ref|YP_003131425.1|	-	0.045	12.7	0.3	0.074	12.0	0.3	1.2	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
DUF1610	PF07754.11	gi|257053592|ref|YP_003131425.1|	-	0.064	13.2	0.2	0.5	10.4	0.1	2.6	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1610)
AAA_25	PF13481.6	gi|257053592|ref|YP_003131425.1|	-	0.065	12.8	0.1	0.13	11.9	0.1	1.4	1	0	0	1	1	1	0	AAA	domain
SRP54	PF00448.22	gi|257053592|ref|YP_003131425.1|	-	0.12	12.0	0.1	0.18	11.4	0.1	1.2	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
tRNA-synt_1b	PF00579.25	gi|257053593|ref|YP_003131426.1|	-	3.3e-57	194.1	0.0	3.8e-57	193.9	0.0	1.0	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(W	and	Y)
Arginase	PF00491.21	gi|257053593|ref|YP_003131426.1|	-	0.038	13.5	0.2	0.058	12.9	0.2	1.2	1	0	0	1	1	1	0	Arginase	family
Methyltransf_11	PF08241.12	gi|257053594|ref|YP_003131427.1|	-	1.6e-18	67.2	0.0	2.5e-18	66.5	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|257053594|ref|YP_003131427.1|	-	8.8e-18	64.8	0.0	2e-17	63.7	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|257053594|ref|YP_003131427.1|	-	1.9e-10	40.7	0.0	2.8e-10	40.2	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|257053594|ref|YP_003131427.1|	-	2.9e-10	40.8	0.0	5.7e-10	39.8	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|257053594|ref|YP_003131427.1|	-	4.4e-08	33.1	0.0	5.5e-08	32.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|257053594|ref|YP_003131427.1|	-	0.00095	18.6	0.0	0.0013	18.2	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_9	PF08003.11	gi|257053594|ref|YP_003131427.1|	-	0.0038	16.2	0.0	0.0054	15.7	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
PCMT	PF01135.19	gi|257053594|ref|YP_003131427.1|	-	0.022	14.5	0.0	0.035	13.9	0.0	1.2	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
AdoMet_MTase	PF07757.13	gi|257053594|ref|YP_003131427.1|	-	0.07	13.5	0.1	0.32	11.3	0.1	1.9	1	1	1	2	2	2	0	Predicted	AdoMet-dependent	methyltransferase
EF-hand_9	PF14658.6	gi|257053594|ref|YP_003131427.1|	-	0.08	13.3	0.0	0.2	12.0	0.0	1.7	1	0	0	1	1	1	0	EF-hand	domain
MetW	PF07021.12	gi|257053594|ref|YP_003131427.1|	-	0.17	11.5	0.1	0.25	10.9	0.1	1.2	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
Methyltransf_32	PF13679.6	gi|257053594|ref|YP_003131427.1|	-	0.23	11.4	0.0	0.38	10.7	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
Claudin_2	PF13903.6	gi|257053595|ref|YP_003131428.1|	-	0.0015	18.3	1.8	0.91	9.2	0.1	2.2	2	0	0	2	2	2	2	PMP-22/EMP/MP20/Claudin	tight	junction
DUF4191	PF13829.6	gi|257053595|ref|YP_003131428.1|	-	0.46	9.8	4.3	3.7	6.8	0.0	2.9	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4191)
PemK_toxin	PF02452.17	gi|257053596|ref|YP_003131429.1|	-	5.6e-07	29.9	0.0	6.5e-07	29.7	0.0	1.1	1	0	0	1	1	1	1	PemK-like,	MazF-like	toxin	of	type	II	toxin-antitoxin	system
MarR_2	PF12802.7	gi|257053597|ref|YP_003131430.1|	-	2.1e-07	30.7	0.0	3.9e-07	29.8	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.10	gi|257053597|ref|YP_003131430.1|	-	5.3e-06	26.1	0.1	8.1e-06	25.5	0.1	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
TrmB	PF01978.19	gi|257053597|ref|YP_003131430.1|	-	1e-05	25.3	0.0	2.2e-05	24.2	0.0	1.4	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.7	gi|257053597|ref|YP_003131430.1|	-	1e-05	25.5	0.1	1.8e-05	24.7	0.0	1.5	2	0	0	2	2	2	1	Helix-turn-helix	domain
Rrf2	PF02082.20	gi|257053597|ref|YP_003131430.1|	-	0.0028	18.0	0.0	0.0052	17.1	0.0	1.4	2	0	0	2	2	1	1	Transcriptional	regulator
Fe_dep_repress	PF01325.19	gi|257053597|ref|YP_003131430.1|	-	0.005	17.0	0.0	0.0086	16.3	0.0	1.3	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_Crp_2	PF13545.6	gi|257053597|ref|YP_003131430.1|	-	0.0067	16.4	0.0	0.0098	15.9	0.0	1.2	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_27	PF13463.6	gi|257053597|ref|YP_003131430.1|	-	0.0085	16.6	0.0	0.014	15.9	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_24	PF13412.6	gi|257053597|ref|YP_003131430.1|	-	0.0091	15.5	0.0	0.016	14.7	0.0	1.4	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
DUF2336	PF10098.9	gi|257053597|ref|YP_003131430.1|	-	0.013	15.0	0.0	0.019	14.4	0.0	1.2	1	0	0	1	1	1	0	Uncharacterised	protein	conserved	in	bacteria	(DUF2336)
HTH_23	PF13384.6	gi|257053597|ref|YP_003131430.1|	-	0.027	14.3	0.0	0.047	13.5	0.0	1.3	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_11	PF08279.12	gi|257053597|ref|YP_003131430.1|	-	0.032	14.2	0.0	0.046	13.7	0.0	1.2	1	0	0	1	1	1	0	HTH	domain
HTH_9	PF08221.11	gi|257053597|ref|YP_003131430.1|	-	0.16	12.1	0.0	0.3	11.2	0.0	1.5	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
DUF2250	PF10007.9	gi|257053597|ref|YP_003131430.1|	-	0.18	11.9	0.0	0.24	11.5	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
SUI1	PF01253.22	gi|257053598|ref|YP_003131431.1|	-	9.8e-23	80.5	0.0	1.2e-22	80.2	0.0	1.1	1	0	0	1	1	1	1	Translation	initiation	factor	SUI1
Img2	PF05046.14	gi|257053598|ref|YP_003131431.1|	-	0.0016	18.7	0.0	0.0023	18.2	0.0	1.5	1	1	0	1	1	1	1	Mitochondrial	large	subunit	ribosomal	protein	(Img2)
DTW	PF03942.15	gi|257053598|ref|YP_003131431.1|	-	0.0074	16.0	0.5	0.0093	15.7	0.5	1.1	1	0	0	1	1	1	1	DTW	domain
Transglut_core	PF01841.19	gi|257053599|ref|YP_003131432.1|	-	6.4e-30	103.9	0.1	1.7e-29	102.5	0.1	1.8	1	0	0	1	1	1	1	Transglutaminase-like	superfamily
Transglut_core3	PF13471.6	gi|257053599|ref|YP_003131432.1|	-	3.3e-05	23.8	1.3	0.00031	20.6	0.0	2.7	2	1	0	2	2	2	1	Transglutaminase-like	superfamily
DUF4129	PF13559.6	gi|257053599|ref|YP_003131432.1|	-	0.00088	19.5	9.0	0.00088	19.5	9.0	3.5	2	1	1	3	3	3	2	Domain	of	unknown	function	(DUF4129)
DUF4218	PF13960.6	gi|257053599|ref|YP_003131432.1|	-	0.023	14.3	0.0	0.046	13.3	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4218)
DUF58	PF01882.18	gi|257053600|ref|YP_003131433.1|	-	2.7e-14	53.2	0.0	6.7e-14	51.9	0.0	1.7	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF58
BTP	PF05232.12	gi|257053600|ref|YP_003131433.1|	-	7	6.8	7.0	18	5.5	7.0	1.6	1	0	0	1	1	1	0	Chlorhexidine	efflux	transporter
AAA_3	PF07726.11	gi|257053601|ref|YP_003131434.1|	-	7.9e-61	203.7	0.0	1.4e-60	202.9	0.0	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_2	PF17863.1	gi|257053601|ref|YP_003131434.1|	-	5e-18	64.7	4.7	1.3e-17	63.4	4.0	2.0	2	0	0	2	2	2	1	AAA	lid	domain
AAA_5	PF07728.14	gi|257053601|ref|YP_003131434.1|	-	1.8e-13	50.6	0.0	3.5e-13	49.7	0.0	1.5	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.29	gi|257053601|ref|YP_003131434.1|	-	7.3e-06	26.4	0.0	1.1e-05	25.8	0.0	1.3	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.26	gi|257053601|ref|YP_003131434.1|	-	3.1e-05	23.7	0.0	0.00051	19.8	0.0	2.1	1	1	0	1	1	1	1	Sigma-54	interaction	domain
RuvB_N	PF05496.12	gi|257053601|ref|YP_003131434.1|	-	0.00015	21.6	0.0	0.0016	18.2	0.0	2.2	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
MCM	PF00493.23	gi|257053601|ref|YP_003131434.1|	-	0.00022	20.4	0.0	0.00034	19.8	0.0	1.3	1	0	0	1	1	1	1	MCM	P-loop	domain
Mg_chelatase	PF01078.21	gi|257053601|ref|YP_003131434.1|	-	0.0017	17.8	0.0	0.2	11.0	0.0	2.2	2	0	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
AAA_2	PF07724.14	gi|257053601|ref|YP_003131434.1|	-	0.025	14.7	0.0	0.056	13.6	0.0	1.5	1	1	0	1	1	1	0	AAA	domain	(Cdc48	subfamily)
Aminotran_1_2	PF00155.21	gi|257053602|ref|YP_003131435.1|	-	6.6e-63	213.1	0.0	7.4e-63	212.9	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
DegT_DnrJ_EryC1	PF01041.17	gi|257053602|ref|YP_003131435.1|	-	1e-14	54.7	0.3	2e-14	53.7	0.3	1.5	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Beta_elim_lyase	PF01212.21	gi|257053602|ref|YP_003131435.1|	-	3.6e-08	33.1	0.0	7e-08	32.1	0.0	1.4	1	0	0	1	1	1	1	Beta-eliminating	lyase
Aminotran_5	PF00266.19	gi|257053602|ref|YP_003131435.1|	-	3.2e-05	23.1	0.0	4.1e-05	22.7	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class-V
Cys_Met_Meta_PP	PF01053.20	gi|257053602|ref|YP_003131435.1|	-	8.3e-05	21.3	0.0	0.00013	20.7	0.0	1.1	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_3	PF00202.21	gi|257053602|ref|YP_003131435.1|	-	0.025	13.2	0.1	0.043	12.5	0.0	1.4	2	0	0	2	2	2	0	Aminotransferase	class-III
Citrate_synt	PF00285.21	gi|257053603|ref|YP_003131436.1|	-	9.2e-106	353.9	0.0	1e-105	353.8	0.0	1.0	1	0	0	1	1	1	1	Citrate	synthase,	C-terminal	domain
DUF4214	PF13946.6	gi|257053603|ref|YP_003131436.1|	-	0.062	13.4	0.0	0.3	11.1	0.0	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4214)
Lactamase_B_2	PF12706.7	gi|257053604|ref|YP_003131437.1|	-	3.2e-16	59.4	0.7	4.3e-16	59.0	0.7	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.6	gi|257053604|ref|YP_003131437.1|	-	4.9e-10	39.5	0.0	8.1e-10	38.8	0.0	1.5	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Baculo_PEP_C	PF04513.12	gi|257053605|ref|YP_003131438.1|	-	4e-06	26.9	0.3	0.04	13.9	0.0	2.2	1	1	1	2	2	2	2	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
ZapB	PF06005.12	gi|257053605|ref|YP_003131438.1|	-	7.5e-06	26.3	5.3	0.00079	19.8	0.7	2.4	2	0	0	2	2	2	1	Cell	division	protein	ZapB
NPV_P10	PF05531.12	gi|257053605|ref|YP_003131438.1|	-	4.4e-05	23.9	3.9	0.026	15.0	1.5	3.8	1	1	2	3	3	3	2	Nucleopolyhedrovirus	P10	protein
DUF5082	PF16888.5	gi|257053605|ref|YP_003131438.1|	-	5.7e-05	23.4	6.6	9.8e-05	22.6	1.0	2.7	2	1	1	3	3	2	1	Domain	of	unknown	function	(DUF5082)
FlaC_arch	PF05377.11	gi|257053605|ref|YP_003131438.1|	-	0.00016	22.0	12.6	0.18	12.2	0.1	4.3	3	1	1	4	4	4	2	Flagella	accessory	protein	C	(FlaC)
Laminin_II	PF06009.12	gi|257053605|ref|YP_003131438.1|	-	0.00016	21.7	0.9	0.00037	20.5	0.9	1.6	1	0	0	1	1	1	1	Laminin	Domain	II
Spc7	PF08317.11	gi|257053605|ref|YP_003131438.1|	-	0.00016	20.6	6.3	0.00029	19.8	5.4	1.7	1	1	0	1	1	1	1	Spc7	kinetochore	protein
AAA_13	PF13166.6	gi|257053605|ref|YP_003131438.1|	-	0.0002	20.2	0.5	0.00026	19.8	0.5	1.1	1	0	0	1	1	1	1	AAA	domain
DivIC	PF04977.15	gi|257053605|ref|YP_003131438.1|	-	0.00021	21.0	0.5	0.18	11.6	0.1	3.2	3	0	0	3	3	3	1	Septum	formation	initiator
DUF1664	PF07889.12	gi|257053605|ref|YP_003131438.1|	-	0.00023	21.2	4.5	0.0058	16.7	3.3	2.9	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF1664)
EzrA	PF06160.12	gi|257053605|ref|YP_003131438.1|	-	0.00025	19.4	2.7	0.00038	18.8	2.7	1.2	1	0	0	1	1	1	1	Septation	ring	formation	regulator,	EzrA
Filament	PF00038.21	gi|257053605|ref|YP_003131438.1|	-	0.00034	20.3	6.9	0.032	13.8	2.1	2.2	1	1	1	2	2	2	2	Intermediate	filament	protein
DUF948	PF06103.11	gi|257053605|ref|YP_003131438.1|	-	0.00044	20.4	0.9	0.028	14.7	0.7	2.7	1	1	1	2	2	2	1	Bacterial	protein	of	unknown	function	(DUF948)
BLOC1_2	PF10046.9	gi|257053605|ref|YP_003131438.1|	-	0.00048	20.4	8.2	0.24	11.7	1.0	3.3	1	1	0	2	2	2	1	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Seryl_tRNA_N	PF02403.22	gi|257053605|ref|YP_003131438.1|	-	0.00049	20.3	3.1	0.0045	17.2	0.5	3.0	1	1	2	3	3	3	1	Seryl-tRNA	synthetase	N-terminal	domain
zf-C4H2	PF10146.9	gi|257053605|ref|YP_003131438.1|	-	0.00054	20.3	3.9	0.00087	19.7	3.9	1.3	1	0	0	1	1	1	1	Zinc	finger-containing	protein
DUF812	PF05667.11	gi|257053605|ref|YP_003131438.1|	-	0.00058	18.9	1.4	0.00082	18.4	1.4	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF812)
Spectrin	PF00435.21	gi|257053605|ref|YP_003131438.1|	-	0.00094	19.6	2.3	0.00094	19.6	2.3	2.1	1	1	1	2	2	2	2	Spectrin	repeat
CENP-F_leu_zip	PF10473.9	gi|257053605|ref|YP_003131438.1|	-	0.00095	19.2	12.0	0.0034	17.4	7.3	2.7	1	1	1	2	2	2	2	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Rab5-bind	PF09311.11	gi|257053605|ref|YP_003131438.1|	-	0.0013	18.2	1.4	0.0013	18.2	1.4	2.0	1	1	1	2	2	2	1	Rabaptin-like	protein
DUF16	PF01519.16	gi|257053605|ref|YP_003131438.1|	-	0.002	18.6	3.2	0.0042	17.5	1.6	2.2	1	1	1	2	2	2	1	Protein	of	unknown	function	DUF16
Lebercilin	PF15619.6	gi|257053605|ref|YP_003131438.1|	-	0.0032	17.2	1.1	0.0048	16.6	1.1	1.2	1	0	0	1	1	1	1	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
TMF_TATA_bd	PF12325.8	gi|257053605|ref|YP_003131438.1|	-	0.0032	17.7	8.1	0.017	15.3	2.2	2.8	1	1	2	3	3	3	2	TATA	element	modulatory	factor	1	TATA	binding
BRE1	PF08647.11	gi|257053605|ref|YP_003131438.1|	-	0.0055	16.8	0.8	0.009	16.1	0.1	1.7	2	0	0	2	2	1	1	BRE1	E3	ubiquitin	ligase
Laminin_I	PF06008.14	gi|257053605|ref|YP_003131438.1|	-	0.0066	16.2	1.3	0.011	15.4	1.3	1.4	1	0	0	1	1	1	1	Laminin	Domain	I
bZIP_1	PF00170.21	gi|257053605|ref|YP_003131438.1|	-	0.0069	16.5	4.4	0.14	12.3	0.1	3.7	3	1	1	4	4	3	1	bZIP	transcription	factor
MscS_porin	PF12795.7	gi|257053605|ref|YP_003131438.1|	-	0.0072	15.9	0.6	0.018	14.6	0.2	1.7	1	1	0	1	1	1	1	Mechanosensitive	ion	channel	porin	domain
HIP1_clath_bdg	PF16515.5	gi|257053605|ref|YP_003131438.1|	-	0.0078	16.8	1.7	0.0078	16.8	1.7	2.4	1	1	1	2	2	2	1	Clathrin-binding	domain	of	Huntingtin-interacting	protein	1
CLZ	PF16526.5	gi|257053605|ref|YP_003131438.1|	-	0.0088	16.4	6.5	0.39	11.1	1.1	3.7	1	1	3	4	4	3	1	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
KASH_CCD	PF14662.6	gi|257053605|ref|YP_003131438.1|	-	0.012	15.5	2.5	0.012	15.5	2.5	1.9	1	1	0	1	1	1	0	Coiled-coil	region	of	CCDC155	or	KASH
AATF-Che1	PF13339.6	gi|257053605|ref|YP_003131438.1|	-	0.013	16.2	0.3	0.025	15.2	0.3	1.5	1	0	0	1	1	1	0	Apoptosis	antagonizing	transcription	factor
DUF3450	PF11932.8	gi|257053605|ref|YP_003131438.1|	-	0.013	14.8	6.0	0.032	13.5	1.4	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3450)
TBCC_N	PF16752.5	gi|257053605|ref|YP_003131438.1|	-	0.013	15.9	3.4	0.11	13.0	0.6	2.7	1	1	2	3	3	3	0	Tubulin-specific	chaperone	C	N-terminal	domain
Dynamitin	PF04912.14	gi|257053605|ref|YP_003131438.1|	-	0.013	14.8	7.9	0.45	9.8	1.6	2.3	1	1	1	2	2	2	0	Dynamitin
HrpB7	PF09486.10	gi|257053605|ref|YP_003131438.1|	-	0.013	15.8	3.1	0.05	14.0	1.4	2.3	1	1	1	2	2	2	0	Bacterial	type	III	secretion	protein	(HrpB7)
DUF4795	PF16043.5	gi|257053605|ref|YP_003131438.1|	-	0.014	15.0	3.8	0.024	14.3	3.8	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4795)
ATG16	PF08614.11	gi|257053605|ref|YP_003131438.1|	-	0.015	15.6	2.4	0.015	15.6	2.4	2.5	1	1	2	3	3	2	0	Autophagy	protein	16	(ATG16)
Sec34	PF04136.15	gi|257053605|ref|YP_003131438.1|	-	0.015	15.1	2.3	0.55	10.1	0.6	2.4	1	1	1	2	2	2	0	Sec34-like	family
DUF4349	PF14257.6	gi|257053605|ref|YP_003131438.1|	-	0.017	14.6	11.4	0.041	13.3	4.4	2.5	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4349)
MCPsignal	PF00015.21	gi|257053605|ref|YP_003131438.1|	-	0.017	14.9	1.0	0.038	13.8	1.0	1.6	1	0	0	1	1	1	0	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
DivIVA	PF05103.13	gi|257053605|ref|YP_003131438.1|	-	0.017	15.2	1.8	0.33	11.1	1.8	2.7	1	1	0	1	1	1	0	DivIVA	protein
Fez1	PF06818.15	gi|257053605|ref|YP_003131438.1|	-	0.017	15.6	3.6	0.033	14.7	3.6	1.5	1	0	0	1	1	1	0	Fez1
Phage_HK97_TLTM	PF06120.11	gi|257053605|ref|YP_003131438.1|	-	0.019	14.1	0.3	0.029	13.5	0.3	1.3	1	0	0	1	1	1	0	Tail	length	tape	measure	protein
Snapin_Pallidin	PF14712.6	gi|257053605|ref|YP_003131438.1|	-	0.021	15.2	0.8	2.9	8.4	0.2	2.6	1	1	0	2	2	2	0	Snapin/Pallidin
DUF724	PF05266.14	gi|257053605|ref|YP_003131438.1|	-	0.022	14.6	1.0	0.041	13.7	0.7	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
FliJ	PF02050.16	gi|257053605|ref|YP_003131438.1|	-	0.028	14.6	0.2	0.16	12.2	0.0	2.2	1	1	1	2	2	2	0	Flagellar	FliJ	protein
TPR_MLP1_2	PF07926.12	gi|257053605|ref|YP_003131438.1|	-	0.03	14.4	7.0	0.075	13.1	4.6	2.4	1	1	1	2	2	2	0	TPR/MLP1/MLP2-like	protein
Nmad5	PF18757.1	gi|257053605|ref|YP_003131438.1|	-	0.031	14.5	1.0	0.14	12.3	1.0	1.9	1	1	0	1	1	1	0	Nucleotide	modification	associated	domain	5
DUF4407	PF14362.6	gi|257053605|ref|YP_003131438.1|	-	0.031	13.6	3.7	0.058	12.7	3.0	1.7	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4407)
SlyX	PF04102.12	gi|257053605|ref|YP_003131438.1|	-	0.032	14.9	9.1	0.035	14.7	0.9	3.8	1	1	2	3	3	3	0	SlyX
Gp58	PF07902.11	gi|257053605|ref|YP_003131438.1|	-	0.032	12.5	0.8	0.046	12.0	0.8	1.2	1	0	0	1	1	1	0	gp58-like	protein
COG6	PF06419.11	gi|257053605|ref|YP_003131438.1|	-	0.033	12.4	1.0	0.46	8.6	0.3	2.1	1	1	1	2	2	2	0	Conserved	oligomeric	complex	COG6
COG2	PF06148.11	gi|257053605|ref|YP_003131438.1|	-	0.034	14.2	6.0	1.2	9.3	1.3	3.1	1	1	1	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
RPW8	PF05659.11	gi|257053605|ref|YP_003131438.1|	-	0.034	13.8	0.5	5.2	6.7	0.1	2.6	2	1	0	2	2	2	0	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
HMMR_N	PF15905.5	gi|257053605|ref|YP_003131438.1|	-	0.038	13.5	7.0	0.094	12.2	7.0	1.6	1	1	0	1	1	1	0	Hyaluronan	mediated	motility	receptor	N-terminal
GAS	PF13851.6	gi|257053605|ref|YP_003131438.1|	-	0.038	13.3	2.1	0.13	11.6	0.3	2.0	1	1	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
Tropomyosin_1	PF12718.7	gi|257053605|ref|YP_003131438.1|	-	0.04	14.1	11.5	0.06	13.5	5.8	2.4	1	1	1	2	2	2	0	Tropomyosin	like
DUF4201	PF13870.6	gi|257053605|ref|YP_003131438.1|	-	0.04	13.7	0.2	0.31	10.8	0.0	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4201)
Fib_alpha	PF08702.10	gi|257053605|ref|YP_003131438.1|	-	0.041	14.1	1.1	0.21	11.8	0.4	2.2	1	1	1	2	2	2	0	Fibrinogen	alpha/beta	chain	family
XhlA	PF10779.9	gi|257053605|ref|YP_003131438.1|	-	0.041	14.1	4.3	0.58	10.4	0.2	3.4	2	1	1	3	3	2	0	Haemolysin	XhlA
WEMBL	PF05701.11	gi|257053605|ref|YP_003131438.1|	-	0.042	12.5	4.1	0.073	11.8	4.1	1.3	1	0	0	1	1	1	0	Weak	chloroplast	movement	under	blue	light
UPF0242	PF06785.11	gi|257053605|ref|YP_003131438.1|	-	0.042	13.9	7.5	0.13	12.4	2.1	2.4	1	1	1	2	2	2	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
DUF4200	PF13863.6	gi|257053605|ref|YP_003131438.1|	-	0.062	13.7	0.7	1.4	9.4	0.1	2.5	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4200)
RmuC	PF02646.16	gi|257053605|ref|YP_003131438.1|	-	0.064	12.4	1.8	3.9	6.5	0.2	2.4	1	1	1	2	2	2	0	RmuC	family
OmpH	PF03938.14	gi|257053605|ref|YP_003131438.1|	-	0.066	13.6	2.2	3.3	8.0	0.1	2.4	1	1	1	2	2	2	0	Outer	membrane	protein	(OmpH-like)
GldM_N	PF12081.8	gi|257053605|ref|YP_003131438.1|	-	0.071	13.2	1.4	0.2	11.7	0.4	2.1	1	1	1	2	2	2	0	GldM	N-terminal	domain
Swi5	PF07061.11	gi|257053605|ref|YP_003131438.1|	-	0.073	13.2	1.5	4	7.6	0.0	3.2	1	1	2	3	3	3	0	Swi5
CREPT	PF16566.5	gi|257053605|ref|YP_003131438.1|	-	0.075	13.2	0.9	13	5.9	0.1	2.2	1	1	1	2	2	2	0	Cell-cycle	alteration	and	expression-elevated	protein	in	tumour
MerR-DNA-bind	PF09278.11	gi|257053605|ref|YP_003131438.1|	-	0.078	13.5	2.1	8.3	7.0	0.0	3.9	4	1	1	5	5	2	0	MerR,	DNA	binding
MAD	PF05557.13	gi|257053605|ref|YP_003131438.1|	-	0.087	11.2	6.0	0.33	9.3	6.4	1.5	1	1	1	2	2	2	0	Mitotic	checkpoint	protein
Mod_r	PF07200.13	gi|257053605|ref|YP_003131438.1|	-	0.087	12.9	4.1	1.1	9.3	1.0	2.2	1	1	1	2	2	2	0	Modifier	of	rudimentary	(Mod(r))	protein
Flagellin_N	PF00669.20	gi|257053605|ref|YP_003131438.1|	-	0.09	12.9	1.9	0.3	11.2	0.4	2.5	1	1	2	3	3	2	0	Bacterial	flagellin	N-terminal	helical	region
ADIP	PF11559.8	gi|257053605|ref|YP_003131438.1|	-	0.096	12.8	0.4	0.32	11.1	0.1	1.9	1	1	1	2	2	2	0	Afadin-	and	alpha	-actinin-Binding
DUF4988	PF16378.5	gi|257053605|ref|YP_003131438.1|	-	0.099	12.3	7.1	1.7	8.2	0.2	4.0	2	2	1	4	4	3	0	Domain	of	unknown	function
Taxilin	PF09728.9	gi|257053605|ref|YP_003131438.1|	-	0.1	11.7	0.2	0.16	11.1	0.2	1.3	1	0	0	1	1	1	0	Myosin-like	coiled-coil	protein
IFT57	PF10498.9	gi|257053605|ref|YP_003131438.1|	-	0.11	11.5	4.8	0.2	10.6	4.5	1.7	1	1	0	1	1	1	0	Intra-flagellar	transport	protein	57
Cob_adeno_trans	PF01923.18	gi|257053605|ref|YP_003131438.1|	-	0.11	12.6	1.0	0.37	10.9	0.5	2.1	1	1	1	2	2	1	0	Cobalamin	adenosyltransferase
DUF4618	PF15397.6	gi|257053605|ref|YP_003131438.1|	-	0.11	11.8	3.0	0.56	9.6	1.1	2.8	2	1	1	3	3	2	0	Domain	of	unknown	function	(DUF4618)
Atg14	PF10186.9	gi|257053605|ref|YP_003131438.1|	-	0.12	11.4	0.2	0.18	10.9	0.2	1.2	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
THOC7	PF05615.13	gi|257053605|ref|YP_003131438.1|	-	0.12	12.6	3.6	0.25	11.6	2.1	2.2	1	1	0	2	2	1	0	Tho	complex	subunit	7
WXG100	PF06013.12	gi|257053605|ref|YP_003131438.1|	-	0.12	12.6	3.2	7.8	6.8	0.2	3.3	1	1	2	3	3	2	0	Proteins	of	100	residues	with	WXG
Cauli_AT	PF03233.13	gi|257053605|ref|YP_003131438.1|	-	0.13	12.2	0.2	14	5.6	0.0	2.3	1	1	1	2	2	2	0	Aphid	transmission	protein
Prefoldin	PF02996.17	gi|257053605|ref|YP_003131438.1|	-	0.13	12.2	5.8	16	5.5	2.3	3.8	1	1	1	2	2	2	0	Prefoldin	subunit
DUF1640	PF07798.11	gi|257053605|ref|YP_003131438.1|	-	0.13	12.3	0.4	0.27	11.3	0.4	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1640)
Not3	PF04065.15	gi|257053605|ref|YP_003131438.1|	-	0.15	11.5	1.7	0.38	10.1	0.5	1.9	1	1	0	2	2	2	0	Not1	N-terminal	domain,	CCR4-Not	complex	component
HOOK	PF05622.12	gi|257053605|ref|YP_003131438.1|	-	0.15	10.2	8.5	0.22	9.7	8.5	1.1	1	0	0	1	1	1	0	HOOK	protein
DASH_Dam1	PF08653.10	gi|257053605|ref|YP_003131438.1|	-	0.15	11.9	4.7	10	6.0	0.0	3.7	4	0	0	4	4	3	0	DASH	complex	subunit	Dam1
ISG65-75	PF11727.8	gi|257053605|ref|YP_003131438.1|	-	0.15	11.2	1.5	3.1	6.9	0.6	2.3	1	1	1	2	2	2	0	Invariant	surface	glycoprotein
ApoLp-III	PF07464.11	gi|257053605|ref|YP_003131438.1|	-	0.16	12.1	1.6	0.6	10.2	1.6	2.0	1	1	0	1	1	1	0	Apolipophorin-III	precursor	(apoLp-III)
MAP65_ASE1	PF03999.12	gi|257053605|ref|YP_003131438.1|	-	0.17	10.6	0.9	0.23	10.1	0.9	1.1	1	0	0	1	1	1	0	Microtubule	associated	protein	(MAP65/ASE1	family)
Wtap	PF17098.5	gi|257053605|ref|YP_003131438.1|	-	0.17	11.8	9.7	0.78	9.7	2.1	2.9	2	1	1	3	3	2	0	WTAP/Mum2p	family
V-SNARE	PF05008.15	gi|257053605|ref|YP_003131438.1|	-	0.18	12.2	6.3	0.79	10.1	1.2	3.3	1	1	2	3	3	3	0	Vesicle	transport	v-SNARE	protein	N-terminus
Synaptobrevin	PF00957.21	gi|257053605|ref|YP_003131438.1|	-	0.19	11.5	1.3	0.51	10.2	1.3	1.8	1	0	0	1	1	1	0	Synaptobrevin
Allexi_40kDa	PF05549.11	gi|257053605|ref|YP_003131438.1|	-	0.2	11.2	0.2	0.33	10.4	0.2	1.4	1	0	0	1	1	1	0	Allexivirus	40kDa	protein
TMPIT	PF07851.13	gi|257053605|ref|YP_003131438.1|	-	0.22	10.8	0.6	0.55	9.4	0.2	1.3	1	1	1	2	2	2	0	TMPIT-like	protein
Golgin_A5	PF09787.9	gi|257053605|ref|YP_003131438.1|	-	0.22	11.0	7.9	0.35	10.3	7.9	1.3	1	0	0	1	1	1	0	Golgin	subfamily	A	member	5
DUF641	PF04859.12	gi|257053605|ref|YP_003131438.1|	-	0.24	11.7	1.1	8.2	6.8	0.2	2.5	1	1	1	2	2	2	0	Plant	protein	of	unknown	function	(DUF641)
LPP	PF04728.13	gi|257053605|ref|YP_003131438.1|	-	0.24	11.8	6.6	2	8.9	1.3	4.0	2	1	2	4	4	2	0	Lipoprotein	leucine-zipper
Prominin	PF05478.11	gi|257053605|ref|YP_003131438.1|	-	0.26	9.2	0.3	0.37	8.7	0.3	1.2	1	0	0	1	1	1	0	Prominin
ERM	PF00769.19	gi|257053605|ref|YP_003131438.1|	-	0.27	11.0	5.3	0.46	10.3	5.3	1.4	1	0	0	1	1	1	0	Ezrin/radixin/moesin	family
CorA	PF01544.18	gi|257053605|ref|YP_003131438.1|	-	0.27	10.5	4.3	1.8	7.8	1.4	2.5	1	1	0	2	2	2	0	CorA-like	Mg2+	transporter	protein
Fmp27_WPPW	PF10359.9	gi|257053605|ref|YP_003131438.1|	-	0.28	10.0	1.5	5.6	5.7	0.1	2.0	1	1	1	2	2	2	0	RNA	pol	II	promoter	Fmp27	protein	domain
GCN5L1	PF06320.13	gi|257053605|ref|YP_003131438.1|	-	0.29	11.3	1.6	1.1	9.4	0.6	2.1	1	1	1	2	2	2	0	GCN5-like	protein	1	(GCN5L1)
Phage_GPO	PF05929.11	gi|257053605|ref|YP_003131438.1|	-	0.32	10.6	2.9	0.76	9.3	2.8	1.6	1	1	0	1	1	1	0	Phage	capsid	scaffolding	protein	(GPO)	serine	peptidase
APG6_N	PF17675.1	gi|257053605|ref|YP_003131438.1|	-	0.32	11.5	12.2	5.6	7.5	12.2	2.4	1	1	0	1	1	1	0	Apg6	coiled-coil	region
Prefoldin_2	PF01920.20	gi|257053605|ref|YP_003131438.1|	-	0.36	10.8	6.8	6.1	6.9	0.5	3.8	1	1	3	4	4	4	0	Prefoldin	subunit
Zw10	PF06248.13	gi|257053605|ref|YP_003131438.1|	-	0.4	9.2	1.5	0.55	8.7	1.5	1.1	1	0	0	1	1	1	0	Centromere/kinetochore	Zw10
DUF2730	PF10805.8	gi|257053605|ref|YP_003131438.1|	-	0.49	10.5	3.5	4.4	7.4	1.3	3.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2730)
TACC_C	PF05010.14	gi|257053605|ref|YP_003131438.1|	-	0.51	10.1	3.6	1.1	9.0	2.1	1.9	1	1	1	2	2	2	0	Transforming	acidic	coiled-coil-containing	protein	(TACC),	C-terminal
Fzo_mitofusin	PF04799.13	gi|257053605|ref|YP_003131438.1|	-	0.52	9.8	2.0	2	8.0	0.3	2.3	1	1	0	2	2	2	0	fzo-like	conserved	region
YabA	PF06156.13	gi|257053605|ref|YP_003131438.1|	-	0.71	10.5	3.1	2.8	8.6	0.5	2.7	1	1	0	2	2	2	0	Initiation	control	protein	YabA
FH2	PF02181.23	gi|257053605|ref|YP_003131438.1|	-	0.72	8.9	2.9	4.5	6.3	0.6	2.0	1	1	1	2	2	2	0	Formin	Homology	2	Domain
Osmo_CC	PF08946.10	gi|257053605|ref|YP_003131438.1|	-	0.82	10.0	12.4	0.65	10.3	1.3	3.5	4	0	0	4	4	2	0	Osmosensory	transporter	coiled	coil
FAM184	PF15665.5	gi|257053605|ref|YP_003131438.1|	-	1.1	9.0	6.2	3.5	7.4	6.2	1.7	1	1	0	1	1	1	0	Family	with	sequence	similarity	184,	A	and	B
Tektin	PF03148.14	gi|257053605|ref|YP_003131438.1|	-	1.1	7.9	5.9	3.1	6.5	0.8	2.9	1	1	1	2	2	2	0	Tektin	family
EMP24_GP25L	PF01105.24	gi|257053605|ref|YP_003131438.1|	-	1.1	9.1	3.6	4.3	7.2	2.8	2.4	1	1	1	2	2	1	0	emp24/gp25L/p24	family/GOLD
Syntaxin-6_N	PF09177.11	gi|257053605|ref|YP_003131438.1|	-	1.2	9.8	7.0	1.8	9.1	2.7	2.5	1	1	2	3	3	2	0	Syntaxin	6,	N-terminal
Trimer_CC	PF08954.11	gi|257053605|ref|YP_003131438.1|	-	1.2	8.7	7.0	0.28	10.8	2.7	2.2	2	0	0	2	2	1	0	Trimerisation	motif
TMF_DNA_bd	PF12329.8	gi|257053605|ref|YP_003131438.1|	-	1.2	9.1	10.0	1.4	9.0	3.9	3.3	1	1	1	2	2	2	0	TATA	element	modulatory	factor	1	DNA	binding
Tup_N	PF08581.10	gi|257053605|ref|YP_003131438.1|	-	1.4	9.3	5.1	1.1	9.6	0.5	2.8	2	1	1	3	3	2	0	Tup	N-terminal
ABC_tran_CTD	PF16326.5	gi|257053605|ref|YP_003131438.1|	-	1.4	9.2	16.7	1.4	9.2	2.7	3.2	2	1	0	3	3	2	0	ABC	transporter	C-terminal	domain
YkyA	PF10368.9	gi|257053605|ref|YP_003131438.1|	-	2	8.0	6.5	5	6.8	6.0	1.8	1	1	0	1	1	1	0	Putative	cell-wall	binding	lipoprotein
DUF4164	PF13747.6	gi|257053605|ref|YP_003131438.1|	-	2.1	8.7	10.9	4.8	7.5	5.0	3.0	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4164)
PCRF	PF03462.18	gi|257053605|ref|YP_003131438.1|	-	2.3	8.1	6.6	20	5.0	3.0	2.3	1	1	1	2	2	2	0	PCRF	domain
TolA_bind_tri	PF16331.5	gi|257053605|ref|YP_003131438.1|	-	2.3	8.3	9.4	4.8	7.3	0.2	3.5	1	1	1	3	3	3	0	TolA	binding	protein	trimerisation
CCDC-167	PF15188.6	gi|257053605|ref|YP_003131438.1|	-	2.7	8.4	5.7	1.8	8.9	1.5	2.7	1	1	0	2	2	1	0	Coiled-coil	domain-containing	protein	167
bZIP_2	PF07716.15	gi|257053605|ref|YP_003131438.1|	-	2.8	8.1	3.7	13	6.0	0.1	3.1	3	0	0	3	3	2	0	Basic	region	leucine	zipper
Rx_N	PF18052.1	gi|257053605|ref|YP_003131438.1|	-	5.5	7.3	9.1	2.2	8.6	1.0	3.2	1	1	3	4	4	3	0	Rx	N-terminal	domain
Cep57_CLD_2	PF14197.6	gi|257053605|ref|YP_003131438.1|	-	7.3	6.8	10.1	2.2	8.4	3.5	3.3	2	1	1	3	3	2	0	Centrosome	localisation	domain	of	PPC89
DUF4140	PF13600.6	gi|257053605|ref|YP_003131438.1|	-	9.3	6.8	10.5	33	5.0	4.2	3.7	1	1	1	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
Prismane	PF03063.20	gi|257053606|ref|YP_003131439.1|	-	9.7e-125	417.1	0.0	4.5e-108	362.2	0.0	2.0	1	1	1	2	2	2	2	Prismane/CO	dehydrogenase	family
GST_N_2	PF13409.6	gi|257053607|ref|YP_003131440.1|	-	4.1e-23	81.5	0.1	1.1e-22	80.1	0.0	1.7	2	0	0	2	2	2	1	Glutathione	S-transferase,	N-terminal	domain
GST_C_2	PF13410.6	gi|257053607|ref|YP_003131440.1|	-	8.5e-13	48.1	0.6	1.6e-12	47.3	0.6	1.5	1	0	0	1	1	1	1	Glutathione	S-transferase,	C-terminal	domain
GST_C	PF00043.25	gi|257053607|ref|YP_003131440.1|	-	3e-08	33.8	0.1	6.9e-08	32.6	0.1	1.6	2	0	0	2	2	2	1	Glutathione	S-transferase,	C-terminal	domain
GST_N_3	PF13417.6	gi|257053607|ref|YP_003131440.1|	-	5.5e-06	26.7	0.1	0.00015	22.1	0.1	2.5	1	1	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
GST_C_3	PF14497.6	gi|257053607|ref|YP_003131440.1|	-	1.2e-05	25.4	0.1	2.2e-05	24.6	0.1	1.4	1	0	0	1	1	1	1	Glutathione	S-transferase,	C-terminal	domain
GST_C_6	PF17171.4	gi|257053607|ref|YP_003131440.1|	-	0.00013	21.7	0.1	0.00023	20.9	0.1	1.4	1	0	0	1	1	1	1	Glutathione	S-transferase,	C-terminal	domain
SANT_DAMP1_like	PF16282.5	gi|257053607|ref|YP_003131440.1|	-	0.012	15.8	0.2	0.037	14.2	0.2	1.9	1	0	0	1	1	1	0	SANT/Myb-like	domain	of	DAMP1
Ribosomal_L16	PF00252.18	gi|257053608|ref|YP_003131441.1|	-	2.1e-29	102.2	0.1	2.5e-29	102.0	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L16p/L10e
RimK	PF08443.11	gi|257053609|ref|YP_003131442.1|	-	3e-25	88.9	0.0	4.2e-25	88.4	0.0	1.1	1	0	0	1	1	1	1	RimK-like	ATP-grasp	domain
GSH-S_ATP	PF02955.16	gi|257053609|ref|YP_003131442.1|	-	2.2e-12	46.7	0.0	3.2e-12	46.2	0.0	1.2	1	0	0	1	1	1	1	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
ATPgrasp_ST	PF14397.6	gi|257053609|ref|YP_003131442.1|	-	5.4e-10	39.0	0.0	0.0002	20.7	0.0	2.9	1	1	1	3	3	3	2	Sugar-transfer	associated	ATP-grasp
ATP-grasp_3	PF02655.14	gi|257053609|ref|YP_003131442.1|	-	5.8e-09	36.2	0.0	1e-08	35.4	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp	PF02222.22	gi|257053609|ref|YP_003131442.1|	-	2.3e-05	24.0	0.0	3.4e-05	23.5	0.0	1.2	1	0	0	1	1	1	1	ATP-grasp	domain
TTL	PF03133.15	gi|257053609|ref|YP_003131442.1|	-	0.0008	18.6	0.0	0.0014	17.8	0.0	1.3	1	0	0	1	1	1	1	Tubulin-tyrosine	ligase	family
R2K_3	PF14243.6	gi|257053609|ref|YP_003131442.1|	-	0.0027	17.7	0.1	0.0045	17.0	0.1	1.3	1	0	0	1	1	1	1	ATP-grasp	domain,	R2K	clade	family	3
R2K_2	PF18299.1	gi|257053609|ref|YP_003131442.1|	-	0.011	15.6	0.1	0.026	14.4	0.1	1.6	1	1	0	1	1	1	0	ATP-grasp	domain,	R2K	clade	family	2
CPSase_L_D2	PF02786.17	gi|257053609|ref|YP_003131442.1|	-	0.014	14.9	0.0	0.017	14.6	0.0	1.2	1	0	0	1	1	1	0	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATP-grasp_5	PF13549.6	gi|257053609|ref|YP_003131442.1|	-	0.06	12.8	0.0	0.11	12.0	0.0	1.3	1	0	0	1	1	1	0	ATP-grasp	domain
Fe_bilin_red	PF05996.12	gi|257053609|ref|YP_003131442.1|	-	0.17	11.5	0.0	0.24	11.1	0.0	1.2	1	0	0	1	1	1	0	Ferredoxin-dependent	bilin	reductase
Zn_Tnp_IS1595	PF12760.7	gi|257053610|ref|YP_003131443.1|	-	2.7e-05	24.0	1.1	3.5e-05	23.7	1.1	1.2	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
Lar_restr_allev	PF14354.6	gi|257053610|ref|YP_003131443.1|	-	0.00014	22.1	0.6	0.00015	22.1	0.6	1.1	1	0	0	1	1	1	1	Restriction	alleviation	protein	Lar
Ogr_Delta	PF04606.12	gi|257053610|ref|YP_003131443.1|	-	0.00015	21.7	0.8	0.00018	21.4	0.8	1.1	1	0	0	1	1	1	1	Ogr/Delta-like	zinc	finger
FdhE	PF04216.12	gi|257053610|ref|YP_003131443.1|	-	0.00022	21.2	1.1	0.00022	21.2	1.1	1.0	1	0	0	1	1	1	1	Protein	involved	in	formate	dehydrogenase	formation
TFIIS_C	PF01096.18	gi|257053610|ref|YP_003131443.1|	-	0.00022	21.0	5.4	0.034	14.0	1.4	2.1	2	0	0	2	2	2	2	Transcription	factor	S-II	(TFIIS)
PhnA_Zn_Ribbon	PF08274.12	gi|257053610|ref|YP_003131443.1|	-	0.0023	17.9	2.0	0.9	9.5	0.4	2.0	2	0	0	2	2	2	2	PhnA	Zinc-Ribbon
RNA_POL_M_15KD	PF02150.16	gi|257053610|ref|YP_003131443.1|	-	0.0024	17.7	2.2	0.017	15.0	0.3	2.1	2	0	0	2	2	2	1	RNA	polymerases	M/15	Kd	subunit
zf-ribbon_3	PF13248.6	gi|257053610|ref|YP_003131443.1|	-	0.0027	17.1	2.0	0.36	10.3	0.1	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
DUF2387	PF09526.10	gi|257053610|ref|YP_003131443.1|	-	0.0063	16.6	1.7	0.01	16.0	1.7	1.3	1	1	0	1	1	1	1	Probable	metal-binding	protein	(DUF2387)
Nudix_N_2	PF14803.6	gi|257053610|ref|YP_003131443.1|	-	0.008	16.1	2.4	0.03	14.2	2.4	1.8	1	1	0	1	1	1	1	Nudix	N-terminal
OrfB_Zn_ribbon	PF07282.11	gi|257053610|ref|YP_003131443.1|	-	0.0082	16.0	1.9	0.014	15.3	1.9	1.3	1	1	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Prim_Zn_Ribbon	PF08273.12	gi|257053610|ref|YP_003131443.1|	-	0.01	16.1	4.3	0.037	14.3	4.3	1.8	1	1	0	1	1	1	0	Zinc-binding	domain	of	primase-helicase
Zn-ribbon_8	PF09723.10	gi|257053610|ref|YP_003131443.1|	-	0.012	15.8	5.1	0.28	11.3	0.1	2.1	2	0	0	2	2	2	0	Zinc	ribbon	domain
zf-H2C2_2	PF13465.6	gi|257053610|ref|YP_003131443.1|	-	0.014	15.8	1.1	2.1	8.9	0.1	2.1	2	0	0	2	2	2	0	Zinc-finger	double	domain
UPF0547	PF10571.9	gi|257053610|ref|YP_003131443.1|	-	0.015	15.4	6.1	0.1	12.7	1.0	2.4	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Cys_rich_CPXG	PF14255.6	gi|257053610|ref|YP_003131443.1|	-	0.018	14.9	2.0	0.026	14.4	2.0	1.3	1	1	0	1	1	1	0	Cysteine-rich	CPXCG
DZR	PF12773.7	gi|257053610|ref|YP_003131443.1|	-	0.022	14.8	1.4	0.057	13.5	1.4	1.7	1	1	0	1	1	1	0	Double	zinc	ribbon
Rubredoxin_2	PF18073.1	gi|257053610|ref|YP_003131443.1|	-	0.029	14.1	7.9	0.35	10.6	1.4	2.2	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
TF_Zn_Ribbon	PF08271.12	gi|257053610|ref|YP_003131443.1|	-	0.047	13.2	4.4	0.53	9.8	4.4	2.1	1	1	0	1	1	1	0	TFIIB	zinc-binding
Desulfoferrod_N	PF06397.12	gi|257053610|ref|YP_003131443.1|	-	0.082	12.5	0.3	5.4	6.7	0.0	2.1	2	0	0	2	2	2	0	Desulfoferrodoxin,	N-terminal	domain
zinc_ribbon_2	PF13240.6	gi|257053610|ref|YP_003131443.1|	-	0.11	12.3	4.7	4.6	7.1	0.2	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
Cys_rich_KTR	PF14205.6	gi|257053610|ref|YP_003131443.1|	-	0.12	12.1	0.5	0.15	11.9	0.4	1.4	1	1	0	1	1	1	0	Cysteine-rich	KTR
zf-LITAF-like	PF10601.9	gi|257053610|ref|YP_003131443.1|	-	0.13	12.5	2.3	0.3	11.4	0.1	1.9	1	1	1	2	2	2	0	LITAF-like	zinc	ribbon	domain
Zn_ribbon_SprT	PF17283.2	gi|257053610|ref|YP_003131443.1|	-	0.19	11.7	4.7	1.8	8.5	3.7	2.1	1	1	1	2	2	2	0	SprT-like	zinc	ribbon	domain
zf-ISL3	PF14690.6	gi|257053610|ref|YP_003131443.1|	-	0.33	11.7	5.1	0.27	11.9	2.6	1.9	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zinc_ribbon_4	PF13717.6	gi|257053610|ref|YP_003131443.1|	-	0.49	10.4	3.3	9	6.3	3.3	2.2	1	1	0	1	1	1	0	zinc-ribbon	domain
HypA	PF01155.19	gi|257053610|ref|YP_003131443.1|	-	0.59	10.2	2.5	5	7.2	0.2	1.9	1	1	0	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Rubredoxin	PF00301.20	gi|257053610|ref|YP_003131443.1|	-	0.63	10.1	8.6	4.2	7.5	0.9	2.9	1	1	0	2	2	2	0	Rubredoxin
ArsA_HSP20	PF17886.1	gi|257053611|ref|YP_003131444.1|	-	3.7e-15	55.2	0.0	5.4e-15	54.7	0.0	1.2	1	0	0	1	1	1	1	HSP20-like	domain	found	in	ArsA
HSP20	PF00011.21	gi|257053611|ref|YP_003131444.1|	-	2.8e-08	33.8	0.0	1.5e-06	28.3	0.0	2.2	1	1	0	1	1	1	1	Hsp20/alpha	crystallin	family
GvpH	PF05455.11	gi|257053611|ref|YP_003131444.1|	-	0.00019	21.5	0.5	0.00023	21.3	0.5	1.3	1	0	0	1	1	1	1	GvpH
PIH1_CS	PF18201.1	gi|257053611|ref|YP_003131444.1|	-	0.017	15.5	0.0	0.025	15.0	0.0	1.2	1	0	0	1	1	1	0	PIH1	CS-like	domain
Gp_dh_C	PF02800.20	gi|257053612|ref|YP_003131445.1|	-	1.7e-49	167.4	0.0	2.4e-49	167.0	0.0	1.2	1	0	0	1	1	1	1	Glyceraldehyde	3-phosphate	dehydrogenase,	C-terminal	domain
Gp_dh_N	PF00044.24	gi|257053612|ref|YP_003131445.1|	-	1.1e-34	118.8	0.0	2e-34	117.9	0.0	1.4	1	0	0	1	1	1	1	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
DapB_N	PF01113.20	gi|257053612|ref|YP_003131445.1|	-	0.0099	16.0	0.1	0.05	13.7	0.0	2.2	2	0	0	2	2	2	1	Dihydrodipicolinate	reductase,	N-terminus
PGK	PF00162.19	gi|257053613|ref|YP_003131446.1|	-	1.6e-103	346.6	0.0	1.9e-103	346.3	0.0	1.0	1	0	0	1	1	1	1	Phosphoglycerate	kinase
Ribosomal_S13	PF00416.22	gi|257053614|ref|YP_003131447.1|	-	0.11	12.9	1.0	0.24	11.8	0.8	1.6	1	1	0	1	1	1	0	Ribosomal	protein	S13/S18
DUF760	PF05542.11	gi|257053615|ref|YP_003131448.1|	-	0.055	13.8	0.8	0.43	11.0	0.0	2.5	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF760)
PEHE	PF15275.6	gi|257053615|ref|YP_003131448.1|	-	6.4	7.4	9.0	0.46	11.1	1.9	2.5	3	0	0	3	3	3	0	PEHE	domain
TrmB	PF01978.19	gi|257053616|ref|YP_003131449.1|	-	3.3e-19	68.5	0.2	1.1e-17	63.6	0.1	2.4	1	1	1	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|257053616|ref|YP_003131449.1|	-	0.00068	19.4	0.0	0.0021	17.8	0.0	1.9	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|257053616|ref|YP_003131449.1|	-	0.0007	19.4	0.1	0.0039	17.0	0.0	2.3	2	0	0	2	2	2	1	MarR	family
CHASE2	PF05226.11	gi|257053616|ref|YP_003131449.1|	-	0.01	15.6	0.1	0.013	15.3	0.1	1.1	1	0	0	1	1	1	0	CHASE2	domain
MMPL	PF03176.15	gi|257053617|ref|YP_003131450.1|	-	6.8e-31	107.4	45.6	1.8e-20	73.2	19.5	2.7	2	1	0	2	2	2	2	MMPL	family
Sterol-sensing	PF12349.8	gi|257053617|ref|YP_003131450.1|	-	9.5e-13	48.3	12.5	6.5e-07	29.3	1.4	2.9	2	1	0	2	2	2	2	Sterol-sensing	domain	of	SREBP	cleavage-activation
Patched	PF02460.18	gi|257053617|ref|YP_003131450.1|	-	1.5e-09	36.6	13.7	1.9e-07	29.6	4.0	2.2	2	0	0	2	2	2	2	Patched	family
ACR_tran	PF00873.19	gi|257053617|ref|YP_003131450.1|	-	0.011	13.4	21.4	0.078	10.6	9.2	2.1	2	0	0	2	2	2	0	AcrB/AcrD/AcrF	family
DUF3464	PF11947.8	gi|257053617|ref|YP_003131450.1|	-	0.25	11.1	1.1	0.87	9.3	1.1	1.9	1	0	0	1	1	1	0	Photosynthesis	affected	mutant	68
Phlebovirus_G2	PF07245.11	gi|257053617|ref|YP_003131450.1|	-	1.2	7.5	2.2	2.1	6.8	2.2	1.3	1	0	0	1	1	1	0	Phlebovirus	glycoprotein	G2
UPF0175	PF03683.13	gi|257053618|ref|YP_003131451.1|	-	1.2e-11	44.2	0.9	2.1e-11	43.3	0.9	1.6	1	1	0	1	1	1	1	Uncharacterised	protein	family	(UPF0175)
DUF3368	PF11848.8	gi|257053619|ref|YP_003131452.1|	-	3.2e-12	46.0	0.1	8.9e-12	44.6	0.0	1.8	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF3368)
Metallophos_2	PF12850.7	gi|257053620|ref|YP_003131453.1|	-	2.1e-33	115.9	0.1	2.3e-33	115.7	0.1	1.0	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|257053620|ref|YP_003131453.1|	-	7e-06	26.7	8.0	0.0006	20.4	2.5	2.4	1	1	1	2	2	2	2	Calcineurin-like	phosphoesterase
Metallophos_3	PF14582.6	gi|257053620|ref|YP_003131453.1|	-	0.072	12.4	0.3	1.6	8.0	0.1	2.0	1	1	1	2	2	2	0	Metallophosphoesterase,	calcineurin	superfamily
Peptidase_M29	PF02073.15	gi|257053621|ref|YP_003131454.1|	-	9.8e-12	44.4	0.0	1.1e-10	40.9	0.0	2.0	2	0	0	2	2	2	2	Thermophilic	metalloprotease	(M29)
KduI	PF04962.12	gi|257053622|ref|YP_003131455.1|	-	0.00037	19.9	0.9	0.001	18.4	0.2	1.8	1	1	1	2	2	2	1	KduI/IolB	family
DUF2387	PF09526.10	gi|257053622|ref|YP_003131455.1|	-	0.04	14.1	0.3	0.094	12.9	0.3	1.7	1	0	0	1	1	1	0	Probable	metal-binding	protein	(DUF2387)
GidB	PF02527.15	gi|257053622|ref|YP_003131455.1|	-	0.061	12.6	0.0	0.094	12.0	0.0	1.2	1	0	0	1	1	1	0	rRNA	small	subunit	methyltransferase	G
zinc_ribbon_4	PF13717.6	gi|257053622|ref|YP_003131455.1|	-	0.37	10.8	2.6	1.1	9.2	2.6	1.8	1	1	0	1	1	1	0	zinc-ribbon	domain
PCMT	PF01135.19	gi|257053623|ref|YP_003131456.1|	-	2.4e-65	220.2	0.0	3e-65	219.9	0.0	1.1	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_31	PF13847.6	gi|257053623|ref|YP_003131456.1|	-	4.1e-06	26.7	0.0	6e-06	26.1	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|257053623|ref|YP_003131456.1|	-	7.8e-06	26.5	0.0	1.3e-05	25.8	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
GCD14	PF08704.10	gi|257053623|ref|YP_003131456.1|	-	4.6e-05	23.2	0.0	6.4e-05	22.7	0.0	1.1	1	0	0	1	1	1	1	tRNA	methyltransferase	complex	GCD14	subunit
RrnaAD	PF00398.20	gi|257053623|ref|YP_003131456.1|	-	0.00023	20.3	0.0	0.00034	19.8	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
CMAS	PF02353.20	gi|257053623|ref|YP_003131456.1|	-	0.00064	19.1	0.0	0.00089	18.6	0.0	1.1	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_24	PF13578.6	gi|257053623|ref|YP_003131456.1|	-	0.02	15.9	0.1	0.058	14.4	0.1	1.8	1	1	0	1	1	1	0	Methyltransferase	domain
Methyltransf_32	PF13679.6	gi|257053623|ref|YP_003131456.1|	-	0.043	13.8	0.0	0.071	13.1	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
Fibrillarin	PF01269.17	gi|257053623|ref|YP_003131456.1|	-	0.053	12.6	0.0	0.078	12.1	0.0	1.2	1	0	0	1	1	1	0	Fibrillarin
Methyltransf_12	PF08242.12	gi|257053623|ref|YP_003131456.1|	-	0.06	14.1	0.0	0.1	13.3	0.0	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
MTS	PF05175.14	gi|257053623|ref|YP_003131456.1|	-	0.065	12.8	0.0	0.096	12.2	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	small	domain
Methyltransf_11	PF08241.12	gi|257053623|ref|YP_003131456.1|	-	0.093	13.4	0.1	0.19	12.4	0.1	1.6	1	1	0	1	1	1	0	Methyltransferase	domain
Methyltransf_4	PF02390.17	gi|257053623|ref|YP_003131456.1|	-	0.13	11.7	0.0	0.2	11.1	0.0	1.3	1	0	0	1	1	1	0	Putative	methyltransferase
Methyltr_RsmB-F	PF01189.17	gi|257053623|ref|YP_003131456.1|	-	0.14	11.8	0.0	0.2	11.3	0.0	1.2	1	0	0	1	1	1	0	16S	rRNA	methyltransferase	RsmB/F
DUF2795	PF11387.8	gi|257053623|ref|YP_003131456.1|	-	0.32	11.2	2.0	0.78	10.0	0.5	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2795)
PCMT	PF01135.19	gi|257053624|ref|YP_003131457.1|	-	5.2e-36	124.4	0.0	6.8e-36	124.0	0.0	1.1	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_31	PF13847.6	gi|257053624|ref|YP_003131457.1|	-	1.9e-05	24.5	0.0	2.4e-05	24.2	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|257053624|ref|YP_003131457.1|	-	3.7e-05	24.4	0.0	7.1e-05	23.4	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|257053624|ref|YP_003131457.1|	-	0.00011	21.8	0.0	0.00016	21.3	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
PrmA	PF06325.13	gi|257053624|ref|YP_003131457.1|	-	0.016	14.6	0.0	0.025	14.0	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_11	PF08241.12	gi|257053624|ref|YP_003131457.1|	-	0.033	14.9	0.0	0.068	13.8	0.0	1.6	1	0	0	1	1	1	0	Methyltransferase	domain
Fibrillarin	PF01269.17	gi|257053624|ref|YP_003131457.1|	-	0.034	13.2	0.0	0.046	12.8	0.0	1.2	1	0	0	1	1	1	0	Fibrillarin
Methyltransf_12	PF08242.12	gi|257053624|ref|YP_003131457.1|	-	0.095	13.4	0.0	0.18	12.6	0.0	1.6	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_18	PF12847.7	gi|257053624|ref|YP_003131457.1|	-	0.16	11.9	0.0	0.25	11.2	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
HTH_31	PF13560.6	gi|257053624|ref|YP_003131457.1|	-	1.1	9.7	10.9	2.4	8.6	0.4	3.0	3	1	0	3	3	3	0	Helix-turn-helix	domain
OrfB_Zn_ribbon	PF07282.11	gi|257053625|ref|YP_003131458.1|	-	1.7e-22	79.1	1.9	1.8e-22	79.1	0.3	1.9	2	0	0	2	2	2	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|257053625|ref|YP_003131458.1|	-	1.2e-09	38.4	0.2	4.2e-09	36.7	0.0	1.9	2	0	0	2	2	2	1	Probable	transposase
HypA	PF01155.19	gi|257053625|ref|YP_003131458.1|	-	0.024	14.7	0.0	0.048	13.7	0.0	1.5	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-piccolo	PF05715.13	gi|257053625|ref|YP_003131458.1|	-	0.1	12.7	0.6	0.22	11.7	0.6	1.5	1	0	0	1	1	1	0	Piccolo	Zn-finger
zinc_ribbon_2	PF13240.6	gi|257053625|ref|YP_003131458.1|	-	0.16	11.7	5.4	1	9.2	5.5	2.2	1	1	1	2	2	2	0	zinc-ribbon	domain
Rubredoxin_2	PF18073.1	gi|257053625|ref|YP_003131458.1|	-	5.3	6.9	10.3	1.4	8.7	0.3	3.1	3	0	0	3	3	3	0	Rubredoxin	metal	binding	domain
CRCB	PF02537.15	gi|257053626|ref|YP_003131459.1|	-	1.7e-17	63.5	9.4	2.1e-17	63.2	9.4	1.1	1	0	0	1	1	1	1	CrcB-like	protein,	Camphor	Resistance	(CrcB)
CRCB	PF02537.15	gi|257053627|ref|YP_003131460.1|	-	2.7e-23	82.1	7.7	3.2e-23	81.9	7.7	1.1	1	0	0	1	1	1	1	CrcB-like	protein,	Camphor	Resistance	(CrcB)
HSP20	PF00011.21	gi|257053628|ref|YP_003131461.1|	-	5e-17	61.9	0.0	6.5e-17	61.5	0.0	1.2	1	0	0	1	1	1	1	Hsp20/alpha	crystallin	family
ArsA_HSP20	PF17886.1	gi|257053628|ref|YP_003131461.1|	-	4.9e-11	42.0	0.0	7.7e-11	41.4	0.0	1.3	1	0	0	1	1	1	1	HSP20-like	domain	found	in	ArsA
PGA_cap	PF09587.10	gi|257053629|ref|YP_003131462.1|	-	1.9e-66	224.2	0.0	2.3e-66	223.9	0.0	1.1	1	0	0	1	1	1	1	Bacterial	capsule	synthesis	protein	PGA_cap
GerPB	PF10803.8	gi|257053629|ref|YP_003131462.1|	-	0.055	13.6	0.0	0.1	12.7	0.0	1.4	1	0	0	1	1	1	0	Spore	germination	GerPB
GAF	PF01590.26	gi|257053630|ref|YP_003131463.1|	-	1.8e-07	31.8	0.0	3.9e-07	30.8	0.0	1.6	1	0	0	1	1	1	1	GAF	domain
GAF_2	PF13185.6	gi|257053630|ref|YP_003131463.1|	-	2.9e-06	27.6	0.7	8.2e-06	26.2	0.0	2.1	3	0	0	3	3	3	1	GAF	domain
Response_reg	PF00072.24	gi|257053630|ref|YP_003131463.1|	-	1.3e-05	25.3	0.4	3.3e-05	24.0	0.4	1.7	1	0	0	1	1	1	1	Response	regulator	receiver	domain
GAF_3	PF13492.6	gi|257053630|ref|YP_003131463.1|	-	0.0045	17.3	0.0	0.0095	16.3	0.0	1.4	1	0	0	1	1	1	1	GAF	domain
OKR_DC_1_N	PF03709.15	gi|257053630|ref|YP_003131463.1|	-	0.018	15.3	0.3	0.039	14.2	0.3	1.6	1	0	0	1	1	1	0	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
ABC-3	PF00950.17	gi|257053632|ref|YP_003131465.1|	-	1.2e-58	198.7	41.9	1.6e-58	198.2	41.9	1.2	1	0	0	1	1	1	1	ABC	3	transport	family
FecCD	PF01032.18	gi|257053632|ref|YP_003131465.1|	-	0.0001	21.4	38.2	0.0001	21.4	38.2	2.0	1	1	0	1	1	1	1	FecCD	transport	family
DUF2407_C	PF13373.6	gi|257053632|ref|YP_003131465.1|	-	0.0092	16.2	0.2	0.031	14.5	0.2	1.9	1	0	0	1	1	1	1	DUF2407	C-terminal	domain
ABC_tran	PF00005.27	gi|257053633|ref|YP_003131466.1|	-	1.4e-29	103.3	0.0	2.1e-29	102.8	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|257053633|ref|YP_003131466.1|	-	8.7e-11	42.2	0.0	6.7e-05	22.8	0.0	2.1	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_30	PF13604.6	gi|257053633|ref|YP_003131466.1|	-	1.9e-05	24.5	0.2	0.00019	21.2	0.2	2.2	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|257053633|ref|YP_003131466.1|	-	3e-05	23.5	0.0	0.00069	19.1	0.0	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|257053633|ref|YP_003131466.1|	-	4.5e-05	23.1	0.0	8.5e-05	22.2	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
ABC_ATPase	PF09818.9	gi|257053633|ref|YP_003131466.1|	-	0.00014	20.8	0.6	0.16	10.7	0.1	3.1	2	1	0	2	2	2	1	Predicted	ATPase	of	the	ABC	class
AAA_16	PF13191.6	gi|257053633|ref|YP_003131466.1|	-	0.00052	20.4	0.6	0.002	18.6	0.6	1.9	1	1	0	1	1	1	1	AAA	ATPase	domain
NTPase_1	PF03266.15	gi|257053633|ref|YP_003131466.1|	-	0.00064	19.7	0.0	0.0086	16.0	0.0	2.5	3	0	0	3	3	3	1	NTPase
AAA_23	PF13476.6	gi|257053633|ref|YP_003131466.1|	-	0.0014	19.1	0.0	0.002	18.6	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|257053633|ref|YP_003131466.1|	-	0.0018	18.5	0.1	0.016	15.4	0.1	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_15	PF13175.6	gi|257053633|ref|YP_003131466.1|	-	0.0056	16.4	0.0	0.0074	16.0	0.0	1.1	1	0	0	1	1	1	1	AAA	ATPase	domain
Mg_chelatase	PF01078.21	gi|257053633|ref|YP_003131466.1|	-	0.019	14.3	0.2	0.1	12.0	0.2	2.0	1	1	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
SbcCD_C	PF13558.6	gi|257053633|ref|YP_003131466.1|	-	0.027	14.7	0.8	0.86	9.9	0.8	2.8	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_7	PF12775.7	gi|257053633|ref|YP_003131466.1|	-	0.038	13.5	0.0	0.058	12.9	0.0	1.2	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
Peripla_BP_4	PF13407.6	gi|257053633|ref|YP_003131466.1|	-	0.045	13.3	0.0	0.079	12.5	0.0	1.3	1	0	0	1	1	1	0	Periplasmic	binding	protein	domain
NACHT	PF05729.12	gi|257053633|ref|YP_003131466.1|	-	0.059	13.3	0.0	0.096	12.6	0.0	1.3	1	0	0	1	1	1	0	NACHT	domain
AAA_33	PF13671.6	gi|257053633|ref|YP_003131466.1|	-	0.077	13.2	0.0	0.24	11.5	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
MMR_HSR1	PF01926.23	gi|257053633|ref|YP_003131466.1|	-	0.078	13.1	0.0	0.17	12.0	0.0	1.7	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
FtsK_SpoIIIE	PF01580.18	gi|257053633|ref|YP_003131466.1|	-	0.12	11.7	0.0	0.24	10.7	0.0	1.4	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
DUF87	PF01935.17	gi|257053633|ref|YP_003131466.1|	-	0.13	12.3	0.0	0.21	11.7	0.0	1.3	1	0	0	1	1	1	0	Helicase	HerA,	central	domain
AAA_27	PF13514.6	gi|257053633|ref|YP_003131466.1|	-	0.13	11.8	0.0	0.27	10.8	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_5	PF07728.14	gi|257053633|ref|YP_003131466.1|	-	0.15	12.1	0.0	0.42	10.6	0.0	1.8	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
RsgA_GTPase	PF03193.16	gi|257053633|ref|YP_003131466.1|	-	0.16	11.8	0.0	0.31	10.9	0.0	1.4	1	0	0	1	1	1	0	RsgA	GTPase
NB-ARC	PF00931.22	gi|257053633|ref|YP_003131466.1|	-	0.22	10.7	0.0	0.4	9.8	0.0	1.4	1	0	0	1	1	1	0	NB-ARC	domain
ZnuA	PF01297.17	gi|257053634|ref|YP_003131467.1|	-	6.3e-40	137.2	0.0	7.7e-40	136.9	0.0	1.1	1	0	0	1	1	1	1	Zinc-uptake	complex	component	A	periplasmic
TAT_signal	PF10518.9	gi|257053634|ref|YP_003131467.1|	-	0.55	10.2	7.0	1.2	9.0	7.0	1.6	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
RTC	PF01137.21	gi|257053635|ref|YP_003131468.1|	-	2.8e-61	206.6	0.0	3.5e-61	206.2	0.0	1.0	1	0	0	1	1	1	1	RNA	3'-terminal	phosphate	cyclase
RTC_insert	PF05189.13	gi|257053635|ref|YP_003131468.1|	-	1.1e-13	51.5	0.2	2.2e-13	50.6	0.2	1.5	1	0	0	1	1	1	1	RNA	3'-terminal	phosphate	cyclase	(RTC),	insert	domain
Aldo_ket_red	PF00248.21	gi|257053636|ref|YP_003131469.1|	-	4.2e-68	229.7	0.0	4.8e-68	229.5	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
DS	PF01916.17	gi|257053637|ref|YP_003131470.1|	-	1.8e-98	329.3	0.0	2.1e-98	329.1	0.0	1.0	1	0	0	1	1	1	1	Deoxyhypusine	synthase
SprT-like	PF10263.9	gi|257053638|ref|YP_003131471.1|	-	5.1e-06	26.3	0.0	7.8e-06	25.7	0.0	1.3	1	1	0	1	1	1	1	SprT-like	family
Zn_ribbon_recom	PF13408.6	gi|257053638|ref|YP_003131471.1|	-	0.57	10.7	3.5	1.7	9.2	3.6	1.8	1	1	0	1	1	1	0	Recombinase	zinc	beta	ribbon	domain
NIF3	PF01784.18	gi|257053639|ref|YP_003131472.1|	-	2.5e-52	177.9	0.0	2.9e-52	177.7	0.0	1.0	1	0	0	1	1	1	1	NIF3	(NGG1p	interacting	factor	3)
AP_endonuc_2	PF01261.24	gi|257053639|ref|YP_003131472.1|	-	0.015	14.7	0.1	0.048	13.1	0.1	1.9	2	0	0	2	2	2	0	Xylose	isomerase-like	TIM	barrel
DUF3244	PF11589.8	gi|257053640|ref|YP_003131473.1|	-	0.095	12.8	2.2	0.15	12.2	1.2	1.8	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3244)
sCache_like	PF16736.5	gi|257053640|ref|YP_003131473.1|	-	0.17	12.0	0.6	0.21	11.7	0.6	1.1	1	0	0	1	1	1	0	Single	Cache-like
BUD22	PF09073.10	gi|257053641|ref|YP_003131474.1|	-	2.5	7.4	12.3	3.2	7.0	12.3	1.1	1	0	0	1	1	1	0	BUD22
TFIIA	PF03153.13	gi|257053641|ref|YP_003131474.1|	-	8.8	6.2	15.7	11	5.9	15.7	1.1	1	0	0	1	1	1	0	Transcription	factor	IIA,	alpha/beta	subunit
Arginase	PF00491.21	gi|257053642|ref|YP_003131475.1|	-	1.2e-50	172.6	2.3	1.6e-50	172.2	2.3	1.1	1	0	0	1	1	1	1	Arginase	family
EFP_N	PF08207.12	gi|257053643|ref|YP_003131476.1|	-	0.00022	21.2	0.0	0.00091	19.2	0.0	1.8	2	0	0	2	2	2	1	Elongation	factor	P	(EF-P)	KOW-like	domain
eIF-5a	PF01287.20	gi|257053643|ref|YP_003131476.1|	-	0.019	15.1	0.3	0.035	14.2	0.3	1.5	1	0	0	1	1	1	0	Eukaryotic	elongation	factor	5A	hypusine,	DNA-binding	OB	fold
EFP	PF01132.20	gi|257053643|ref|YP_003131476.1|	-	0.11	12.6	1.9	0.77	9.8	0.1	2.3	2	0	0	2	2	2	0	Elongation	factor	P	(EF-P)	OB	domain
ABC1	PF03109.16	gi|257053644|ref|YP_003131477.1|	-	4.2e-28	97.9	0.0	2.2e-27	95.6	0.0	2.1	2	0	0	2	2	2	1	ABC1	family
APH	PF01636.23	gi|257053644|ref|YP_003131477.1|	-	0.00012	22.1	0.8	0.0037	17.2	0.8	2.7	1	1	0	1	1	1	1	Phosphotransferase	enzyme	family
Pkinase	PF00069.25	gi|257053644|ref|YP_003131477.1|	-	0.00015	21.3	0.0	0.00025	20.5	0.0	1.3	1	0	0	1	1	1	1	Protein	kinase	domain
WaaY	PF06176.11	gi|257053644|ref|YP_003131477.1|	-	0.0077	15.9	0.0	0.014	15.0	0.0	1.5	1	1	0	1	1	1	1	Lipopolysaccharide	core	biosynthesis	protein	(WaaY)
HSP20	PF00011.21	gi|257053645|ref|YP_003131478.1|	-	2.8e-11	43.5	0.0	3.2e-11	43.3	0.0	1.0	1	0	0	1	1	1	1	Hsp20/alpha	crystallin	family
ArsA_HSP20	PF17886.1	gi|257053645|ref|YP_003131478.1|	-	0.033	13.8	0.1	0.069	12.7	0.1	1.6	1	1	0	1	1	1	0	HSP20-like	domain	found	in	ArsA
HEAT_2	PF13646.6	gi|257053646|ref|YP_003131479.1|	-	2.1e-07	31.2	16.5	0.0077	16.6	1.3	4.7	3	2	0	4	4	4	3	HEAT	repeats
HEAT_EZ	PF13513.6	gi|257053646|ref|YP_003131479.1|	-	5.1e-06	26.9	5.6	0.91	10.1	0.2	4.8	4	2	0	4	4	4	2	HEAT-like	repeat
Adaptin_N	PF01602.20	gi|257053646|ref|YP_003131479.1|	-	0.00014	20.6	0.0	0.017	13.7	0.0	2.1	2	0	0	2	2	2	2	Adaptin	N	terminal	region
Cnd1	PF12717.7	gi|257053646|ref|YP_003131479.1|	-	0.013	15.6	0.0	0.77	9.8	0.0	2.6	2	1	1	3	3	3	0	non-SMC	mitotic	condensation	complex	subunit	1
HEAT	PF02985.22	gi|257053646|ref|YP_003131479.1|	-	0.098	13.0	5.9	41	4.8	0.0	5.3	5	1	1	6	6	6	0	HEAT	repeat
API5	PF05918.11	gi|257053646|ref|YP_003131479.1|	-	0.16	10.7	0.0	0.25	10.1	0.0	1.3	1	0	0	1	1	1	0	Apoptosis	inhibitory	protein	5	(API5)
HEAT_PBS	PF03130.16	gi|257053646|ref|YP_003131479.1|	-	1.2	10.1	5.8	56	4.8	0.1	3.8	3	0	0	3	3	3	0	PBS	lyase	HEAT-like	repeat
SBP_bac_5	PF00496.22	gi|257053647|ref|YP_003131480.1|	-	2.1e-37	129.0	10.4	3e-37	128.5	10.4	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
TAT_signal	PF10518.9	gi|257053647|ref|YP_003131480.1|	-	0.0016	18.2	1.1	0.0016	18.2	1.1	1.8	2	0	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF834	PF05754.14	gi|257053647|ref|YP_003131480.1|	-	0.046	13.8	0.1	0.18	11.8	0.1	2.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF834)
BPD_transp_1	PF00528.22	gi|257053648|ref|YP_003131481.1|	-	2.8e-36	125.0	15.1	2.8e-36	125.0	15.1	2.1	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
UBA_6	PF18039.1	gi|257053648|ref|YP_003131481.1|	-	0.0054	16.6	0.0	0.01	15.7	0.0	1.3	1	0	0	1	1	1	1	UBA-like	domain
BPD_transp_1	PF00528.22	gi|257053649|ref|YP_003131482.1|	-	1.7e-25	89.9	14.4	1.7e-25	89.9	14.4	1.8	2	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
Cyd_oper_YbgE	PF09600.10	gi|257053649|ref|YP_003131482.1|	-	0.0094	16.3	2.5	0.045	14.1	2.5	2.2	1	0	0	1	1	1	1	Cyd	operon	protein	YbgE	(Cyd_oper_YbgE)
OppC_N	PF12911.7	gi|257053649|ref|YP_003131482.1|	-	1.2	9.2	5.3	0.42	10.6	0.2	2.8	3	0	0	3	3	3	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
ABC_tran	PF00005.27	gi|257053650|ref|YP_003131483.1|	-	1e-54	184.8	0.0	4.9e-28	98.4	0.0	2.2	2	0	0	2	2	2	2	ABC	transporter
oligo_HPY	PF08352.12	gi|257053650|ref|YP_003131483.1|	-	1.9e-35	121.2	1.0	5.3e-19	68.5	0.1	2.5	2	0	0	2	2	2	2	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|257053650|ref|YP_003131483.1|	-	2.9e-15	56.9	3.6	2.7e-06	27.4	0.3	4.2	3	1	1	4	4	4	4	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|257053650|ref|YP_003131483.1|	-	2.9e-10	40.6	6.1	0.0002	21.7	0.1	3.8	2	2	0	2	2	2	2	AAA	domain
AAA_16	PF13191.6	gi|257053650|ref|YP_003131483.1|	-	2.2e-08	34.7	0.0	0.00048	20.5	0.0	2.6	2	1	0	2	2	2	2	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|257053650|ref|YP_003131483.1|	-	4.1e-07	30.0	0.0	0.013	15.4	0.0	2.4	2	0	0	2	2	2	2	RsgA	GTPase
SMC_N	PF02463.19	gi|257053650|ref|YP_003131483.1|	-	6.8e-07	29.0	6.9	0.06	12.8	0.1	4.1	3	1	0	3	3	3	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|257053650|ref|YP_003131483.1|	-	9.9e-07	28.4	1.2	0.0032	17.2	0.2	2.4	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
ABC_ATPase	PF09818.9	gi|257053650|ref|YP_003131483.1|	-	2.2e-06	26.7	2.6	0.034	13.0	0.1	3.9	4	1	0	4	4	4	2	Predicted	ATPase	of	the	ABC	class
NB-ARC	PF00931.22	gi|257053650|ref|YP_003131483.1|	-	7.7e-06	25.3	0.2	0.037	13.2	0.0	2.3	2	0	0	2	2	2	2	NB-ARC	domain
MMR_HSR1	PF01926.23	gi|257053650|ref|YP_003131483.1|	-	2.2e-05	24.5	0.0	0.028	14.5	0.0	2.5	2	0	0	2	2	2	1	50S	ribosome-binding	GTPase
AAA_24	PF13479.6	gi|257053650|ref|YP_003131483.1|	-	2.4e-05	24.2	0.0	0.041	13.6	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
AAA_23	PF13476.6	gi|257053650|ref|YP_003131483.1|	-	4e-05	24.2	0.1	0.16	12.4	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
TniB	PF05621.11	gi|257053650|ref|YP_003131483.1|	-	4.5e-05	22.9	1.1	0.016	14.6	0.1	3.2	3	0	0	3	3	3	1	Bacterial	TniB	protein
AAA_25	PF13481.6	gi|257053650|ref|YP_003131483.1|	-	9e-05	22.1	0.4	0.2	11.2	0.2	2.9	2	1	0	2	2	2	2	AAA	domain
PRK	PF00485.18	gi|257053650|ref|YP_003131483.1|	-	0.00016	21.4	0.1	0.19	11.4	0.0	2.3	2	0	0	2	2	2	2	Phosphoribulokinase	/	Uridine	kinase	family
MeaB	PF03308.16	gi|257053650|ref|YP_003131483.1|	-	0.00019	20.5	0.7	0.00028	20.0	0.0	1.5	2	0	0	2	2	1	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
NACHT	PF05729.12	gi|257053650|ref|YP_003131483.1|	-	0.00027	20.9	3.7	0.25	11.2	0.2	3.0	3	0	0	3	3	3	2	NACHT	domain
ATPase	PF06745.13	gi|257053650|ref|YP_003131483.1|	-	0.00033	20.1	0.2	0.31	10.3	0.0	2.5	2	0	0	2	2	2	2	KaiC
RNA_helicase	PF00910.22	gi|257053650|ref|YP_003131483.1|	-	0.00047	20.5	0.0	1.5	9.2	0.0	2.4	2	0	0	2	2	2	2	RNA	helicase
MobB	PF03205.14	gi|257053650|ref|YP_003131483.1|	-	0.00064	19.6	0.1	0.83	9.6	0.0	2.5	2	0	0	2	2	2	2	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
TsaE	PF02367.17	gi|257053650|ref|YP_003131483.1|	-	0.0007	19.6	0.1	0.67	10.0	0.0	2.3	2	0	0	2	2	2	1	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
Roc	PF08477.13	gi|257053650|ref|YP_003131483.1|	-	0.00091	19.4	0.1	1.3	9.2	0.0	2.3	2	0	0	2	2	2	2	Ras	of	Complex,	Roc,	domain	of	DAPkinase
AAA	PF00004.29	gi|257053650|ref|YP_003131483.1|	-	0.0013	19.2	0.0	0.26	11.7	0.0	2.6	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_33	PF13671.6	gi|257053650|ref|YP_003131483.1|	-	0.002	18.3	0.3	3	8.0	0.2	2.4	2	0	0	2	2	2	2	AAA	domain
AAA_7	PF12775.7	gi|257053650|ref|YP_003131483.1|	-	0.0027	17.2	0.0	2.2	7.8	0.0	2.3	2	0	0	2	2	2	2	P-loop	containing	dynein	motor	region
Septin	PF00735.18	gi|257053650|ref|YP_003131483.1|	-	0.0032	16.8	0.0	2.5	7.3	0.0	2.2	2	0	0	2	2	2	2	Septin
NTPase_1	PF03266.15	gi|257053650|ref|YP_003131483.1|	-	0.0069	16.3	0.3	1.8	8.4	0.0	2.7	2	0	0	2	2	2	1	NTPase
PhoH	PF02562.16	gi|257053650|ref|YP_003131483.1|	-	0.0092	15.5	0.0	2.8	7.3	0.0	2.4	2	0	0	2	2	2	1	PhoH-like	protein
AAA_30	PF13604.6	gi|257053650|ref|YP_003131483.1|	-	0.0095	15.7	0.0	2.4	7.8	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
IstB_IS21	PF01695.17	gi|257053650|ref|YP_003131483.1|	-	0.0099	15.6	0.1	7.8	6.2	0.0	2.8	3	0	0	3	3	3	0	IstB-like	ATP	binding	protein
Zeta_toxin	PF06414.12	gi|257053650|ref|YP_003131483.1|	-	0.011	15.0	0.1	2.2	7.5	0.0	2.5	2	0	0	2	2	2	0	Zeta	toxin
Sigma54_activat	PF00158.26	gi|257053650|ref|YP_003131483.1|	-	0.011	15.4	0.0	7.1	6.3	0.0	2.5	2	0	0	2	2	2	0	Sigma-54	interaction	domain
PduV-EutP	PF10662.9	gi|257053650|ref|YP_003131483.1|	-	0.011	15.4	0.1	0.34	10.7	0.1	2.2	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_5	PF07728.14	gi|257053650|ref|YP_003131483.1|	-	0.015	15.3	0.1	1.8	8.6	0.0	2.5	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_18	PF13238.6	gi|257053650|ref|YP_003131483.1|	-	0.017	15.7	0.1	9.8	6.7	0.0	2.6	2	0	0	2	2	2	0	AAA	domain
DUF87	PF01935.17	gi|257053650|ref|YP_003131483.1|	-	0.039	14.0	0.8	0.48	10.5	0.0	2.3	2	0	0	2	2	2	0	Helicase	HerA,	central	domain
AAA_15	PF13175.6	gi|257053650|ref|YP_003131483.1|	-	0.048	13.4	0.4	8.4	6.0	0.0	2.8	3	0	0	3	3	3	0	AAA	ATPase	domain
FeoB_N	PF02421.18	gi|257053650|ref|YP_003131483.1|	-	0.054	13.0	0.0	1.4	8.5	0.0	2.3	2	0	0	2	2	2	0	Ferrous	iron	transport	protein	B
ATP-synt_ab	PF00006.25	gi|257053650|ref|YP_003131483.1|	-	0.061	13.0	0.0	2	8.0	0.0	2.2	2	0	0	2	2	2	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
DUF815	PF05673.13	gi|257053650|ref|YP_003131483.1|	-	0.067	12.3	0.1	2.1	7.4	0.0	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF815)
cobW	PF02492.19	gi|257053650|ref|YP_003131483.1|	-	0.08	12.5	0.6	5	6.7	0.0	2.3	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
T2SSE	PF00437.20	gi|257053650|ref|YP_003131483.1|	-	0.11	11.5	0.0	1.7	7.7	0.0	2.2	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
DLIC	PF05783.11	gi|257053650|ref|YP_003131483.1|	-	0.12	11.1	0.2	2.5	6.8	0.0	2.1	2	0	0	2	2	2	0	Dynein	light	intermediate	chain	(DLIC)
SbcCD_C	PF13558.6	gi|257053650|ref|YP_003131483.1|	-	1.5	9.1	5.0	38	4.6	1.0	3.7	2	2	0	2	2	2	0	Putative	exonuclease	SbcCD,	C	subunit
CPT	PF07931.12	gi|257053650|ref|YP_003131483.1|	-	3.7	7.4	5.2	9.3	6.1	0.1	3.4	4	1	1	5	5	4	0	Chloramphenicol	phosphotransferase-like	protein
SfLAP	PF11139.8	gi|257053651|ref|YP_003131484.1|	-	0.0001	21.8	0.8	0.00012	21.6	0.8	1.0	1	0	0	1	1	1	1	Sap,	sulfolipid-1-addressing	protein
DUF3792	PF12670.7	gi|257053651|ref|YP_003131484.1|	-	0.0025	17.9	1.3	0.0031	17.7	1.3	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3792)
TRP	PF06011.12	gi|257053651|ref|YP_003131484.1|	-	0.007	15.1	2.0	0.0075	15.1	2.0	1.0	1	0	0	1	1	1	1	Transient	receptor	potential	(TRP)	ion	channel
GPI2	PF06432.11	gi|257053651|ref|YP_003131484.1|	-	0.0087	15.5	0.7	0.0093	15.4	0.7	1.0	1	0	0	1	1	1	1	Phosphatidylinositol	N-acetylglucosaminyltransferase
DUF4181	PF13789.6	gi|257053651|ref|YP_003131484.1|	-	0.011	15.9	0.7	0.014	15.6	0.7	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4181)
DUF5423	PF17461.2	gi|257053651|ref|YP_003131484.1|	-	0.013	14.4	0.4	0.015	14.2	0.4	1.0	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5423)
DUF2207	PF09972.9	gi|257053651|ref|YP_003131484.1|	-	0.033	13.0	0.2	0.034	12.9	0.2	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
PsbN	PF02468.15	gi|257053651|ref|YP_003131484.1|	-	0.034	14.0	1.6	0.034	14.0	1.6	1.9	1	1	1	2	2	2	0	Photosystem	II	reaction	centre	N	protein	(psbN)
Ceramidase	PF05875.12	gi|257053651|ref|YP_003131484.1|	-	0.04	13.4	0.4	0.046	13.2	0.4	1.0	1	0	0	1	1	1	0	Ceramidase
CRPA	PF05745.11	gi|257053651|ref|YP_003131484.1|	-	0.057	13.4	0.6	0.079	13.0	0.6	1.2	1	0	0	1	1	1	0	Chlamydia	15	kDa	cysteine-rich	outer	membrane	protein	(CRPA)
SLATT_3	PF18184.1	gi|257053651|ref|YP_003131484.1|	-	0.066	13.4	0.7	0.077	13.1	0.7	1.1	1	0	0	1	1	1	0	SMODS	and	SLOG-associating	2TM	effector	domain	3
AJAP1_PANP_C	PF15298.6	gi|257053651|ref|YP_003131484.1|	-	0.076	13.2	0.0	0.091	13.0	0.0	1.1	1	0	0	1	1	1	0	AJAP1/PANP	C-terminus
CPP1-like	PF11833.8	gi|257053651|ref|YP_003131484.1|	-	0.081	12.6	0.3	0.093	12.4	0.3	1.1	1	0	0	1	1	1	0	Protein	CHAPERONE-LIKE	PROTEIN	OF	POR1-like
DUF805	PF05656.14	gi|257053651|ref|YP_003131484.1|	-	0.13	12.7	1.7	0.14	12.5	1.7	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF805)
BTP	PF05232.12	gi|257053651|ref|YP_003131484.1|	-	0.2	11.8	4.9	0.26	11.4	4.9	1.2	1	0	0	1	1	1	0	Chlorhexidine	efflux	transporter
EphA2_TM	PF14575.6	gi|257053651|ref|YP_003131484.1|	-	0.29	12.0	0.2	0.29	12.0	0.2	2.0	1	1	1	2	2	2	0	Ephrin	type-A	receptor	2	transmembrane	domain
DUF2157	PF09925.9	gi|257053651|ref|YP_003131484.1|	-	0.31	10.8	4.0	0.83	9.4	4.3	1.3	1	1	0	1	1	1	0	Predicted	membrane	protein	(DUF2157)
GspL_C	PF12693.7	gi|257053651|ref|YP_003131484.1|	-	0.65	9.8	2.3	1.6	8.5	0.1	1.9	2	0	0	2	2	2	0	GspL	periplasmic	domain
ECSCR	PF15820.5	gi|257053651|ref|YP_003131484.1|	-	0.69	9.8	0.1	0.69	9.8	0.1	1.9	1	1	1	2	2	2	0	Endothelial	cell-specific	chemotaxis	regulator
DUF4131	PF13567.6	gi|257053651|ref|YP_003131484.1|	-	0.86	9.2	4.2	1.9	8.1	0.6	1.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4131)
RCR	PF12273.8	gi|257053651|ref|YP_003131484.1|	-	0.91	10.2	4.9	1.9	9.1	0.1	2.1	2	0	0	2	2	2	0	Chitin	synthesis	regulation,	resistance	to	Congo	red
DUF4330	PF14221.6	gi|257053651|ref|YP_003131484.1|	-	3	8.1	6.6	1.1	9.4	0.3	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4330)
SIT	PF15330.6	gi|257053651|ref|YP_003131484.1|	-	5.5	7.5	4.8	32	5.0	0.0	2.1	2	0	0	2	2	2	0	SHP2-interacting	transmembrane	adaptor	protein,	SIT
GIDE	PF12483.8	gi|257053652|ref|YP_003131485.1|	-	0.0018	17.7	0.0	0.0057	16.1	0.0	1.8	1	1	0	1	1	1	1	E3	Ubiquitin	ligase
CSD	PF00313.22	gi|257053654|ref|YP_003131487.1|	-	1.8e-21	75.7	0.5	2e-21	75.6	0.5	1.0	1	0	0	1	1	1	1	'Cold-shock'	DNA-binding	domain
S1-like	PF14444.6	gi|257053654|ref|YP_003131487.1|	-	0.012	15.5	1.0	0.018	14.9	1.0	1.4	1	1	0	1	1	1	0	S1-like
Rho_RNA_bind	PF07497.12	gi|257053654|ref|YP_003131487.1|	-	0.025	14.5	0.0	0.03	14.2	0.0	1.1	1	0	0	1	1	1	0	Rho	termination	factor,	RNA-binding	domain
OB_RNB	PF08206.11	gi|257053654|ref|YP_003131487.1|	-	0.029	14.0	2.1	0.047	13.4	2.1	1.4	1	0	0	1	1	1	0	Ribonuclease	B	OB	domain
UbiA	PF01040.18	gi|257053656|ref|YP_003131489.1|	-	9.1e-09	35.0	29.9	9.1e-09	35.0	29.9	3.0	1	1	1	2	2	2	1	UbiA	prenyltransferase	family
FAD_binding_7	PF03441.14	gi|257053657|ref|YP_003131490.1|	-	8.8e-59	198.4	0.1	1.9e-58	197.3	0.1	1.5	1	0	0	1	1	1	1	FAD	binding	domain	of	DNA	photolyase
DNA_photolyase	PF00875.18	gi|257053657|ref|YP_003131490.1|	-	1.8e-40	138.6	0.2	3.1e-40	137.8	0.2	1.3	1	0	0	1	1	1	1	DNA	photolyase
RseC_MucC	PF04246.12	gi|257053658|ref|YP_003131491.1|	-	0.0033	17.4	1.3	0.0036	17.2	1.3	1.0	1	0	0	1	1	1	1	Positive	regulator	of	sigma(E),	RseC/MucC
DUF2207	PF09972.9	gi|257053658|ref|YP_003131491.1|	-	0.026	13.3	1.4	0.027	13.2	1.4	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
DUF4191	PF13829.6	gi|257053658|ref|YP_003131491.1|	-	0.072	12.4	0.4	0.08	12.3	0.4	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4191)
OppC_N	PF12911.7	gi|257053658|ref|YP_003131491.1|	-	0.13	12.2	4.2	0.14	12.1	1.1	2.0	2	0	0	2	2	2	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
DUF2244	PF10003.9	gi|257053658|ref|YP_003131491.1|	-	0.82	9.3	2.8	0.97	9.1	2.8	1.0	1	0	0	1	1	1	0	Integral	membrane	protein	(DUF2244)
Colicin_V	PF02674.16	gi|257053658|ref|YP_003131491.1|	-	1.5	8.8	10.5	6.4	6.7	10.5	1.8	1	1	0	1	1	1	0	Colicin	V	production	protein
FeoB_associated	PF12669.7	gi|257053658|ref|YP_003131491.1|	-	5.3	7.5	5.9	13	6.2	0.6	2.1	2	0	0	2	2	2	0	FeoB-associated	Cys-rich	membrane	protein
zf_UBZ	PF18439.1	gi|257053660|ref|YP_003131493.1|	-	0.12	12.0	0.9	5.8	6.6	0.1	2.2	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
Abhydrolase_3	PF07859.13	gi|257053661|ref|YP_003131494.1|	-	8.7e-70	234.8	0.7	1.1e-69	234.5	0.7	1.1	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
COesterase	PF00135.28	gi|257053661|ref|YP_003131494.1|	-	4.9e-07	29.0	0.2	9.4e-07	28.1	0.2	1.5	1	1	0	1	1	1	1	Carboxylesterase	family
Chlorophyllase2	PF12740.7	gi|257053661|ref|YP_003131494.1|	-	0.0025	16.8	0.0	0.0042	16.0	0.0	1.3	1	0	0	1	1	1	1	Chlorophyllase	enzyme
Peptidase_S9	PF00326.21	gi|257053661|ref|YP_003131494.1|	-	0.0052	16.3	0.2	0.15	11.5	0.1	2.3	3	0	0	3	3	3	1	Prolyl	oligopeptidase	family
Thioesterase	PF00975.20	gi|257053661|ref|YP_003131494.1|	-	0.022	14.9	0.0	0.035	14.2	0.0	1.3	1	0	0	1	1	1	0	Thioesterase	domain
DLH	PF01738.18	gi|257053661|ref|YP_003131494.1|	-	0.075	12.6	0.0	1.1	8.8	0.0	2.4	3	0	0	3	3	3	0	Dienelactone	hydrolase	family
Say1_Mug180	PF10340.9	gi|257053661|ref|YP_003131494.1|	-	0.11	11.3	0.3	0.46	9.3	0.3	1.8	1	1	0	1	1	1	0	Steryl	acetyl	hydrolase
PvlArgDC	PF01862.16	gi|257053663|ref|YP_003131496.1|	-	4.9e-32	111.0	0.1	5.7e-32	110.8	0.1	1.0	1	0	0	1	1	1	1	Pyruvoyl-dependent	arginine	decarboxylase	(PvlArgDC)
Fer4_22	PF17179.4	gi|257053664|ref|YP_003131497.1|	-	3.6e-29	101.5	11.6	5.8e-29	100.8	11.6	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|257053664|ref|YP_003131497.1|	-	1.4e-06	28.7	3.6	0.0076	16.8	0.4	2.7	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|257053664|ref|YP_003131497.1|	-	5.5e-06	26.4	8.5	0.01	16.0	1.2	2.4	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|257053664|ref|YP_003131497.1|	-	8.1e-05	22.5	10.6	0.015	15.4	2.1	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|257053664|ref|YP_003131497.1|	-	0.00027	21.4	11.4	0.021	15.4	0.6	2.5	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|257053664|ref|YP_003131497.1|	-	0.0003	20.8	11.6	0.0095	16.0	1.8	2.4	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|257053664|ref|YP_003131497.1|	-	0.0032	17.9	16.7	0.016	15.6	2.8	2.4	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|257053664|ref|YP_003131497.1|	-	0.0077	17.1	8.5	0.59	11.1	0.3	2.5	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_21	PF14697.6	gi|257053664|ref|YP_003131497.1|	-	0.028	14.5	13.2	0.19	11.9	3.3	2.4	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|257053664|ref|YP_003131497.1|	-	0.038	13.8	18.0	0.1	12.5	3.3	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Plavaka	PF18759.1	gi|257053664|ref|YP_003131497.1|	-	0.045	13.0	0.2	0.07	12.3	0.2	1.2	1	0	0	1	1	1	0	Plavaka	transposase
Fer4_6	PF12837.7	gi|257053664|ref|YP_003131497.1|	-	0.1	12.7	22.2	0.44	10.7	5.9	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|257053664|ref|YP_003131497.1|	-	0.38	11.0	5.9	3.9	7.7	1.9	2.3	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
NAD_binding_1	PF00175.21	gi|257053665|ref|YP_003131498.1|	-	2.5e-11	44.2	0.0	5.1e-11	43.2	0.0	1.5	1	0	0	1	1	1	1	Oxidoreductase	NAD-binding	domain
FAD_binding_6	PF00970.24	gi|257053665|ref|YP_003131498.1|	-	7.4e-08	32.7	0.0	1.3e-07	31.9	0.0	1.3	1	0	0	1	1	1	1	Oxidoreductase	FAD-binding	domain
DHODB_Fe-S_bind	PF10418.9	gi|257053665|ref|YP_003131498.1|	-	1e-07	31.6	0.7	2.2e-07	30.6	0.7	1.6	1	0	0	1	1	1	1	Iron-sulfur	cluster	binding	domain	of	dihydroorotate	dehydrogenase	B
FAD_binding_8	PF08022.12	gi|257053665|ref|YP_003131498.1|	-	0.16	12.1	0.0	0.46	10.6	0.0	1.8	1	1	0	1	1	1	0	FAD-binding	domain
NAD_binding_6	PF08030.12	gi|257053665|ref|YP_003131498.1|	-	0.19	11.8	0.1	1.7	8.7	0.0	2.0	2	0	0	2	2	2	0	Ferric	reductase	NAD	binding	domain
Oxidored_q6	PF01058.22	gi|257053666|ref|YP_003131499.1|	-	2.6e-24	85.5	0.1	4.9e-24	84.6	0.0	1.5	2	0	0	2	2	2	1	NADH	ubiquinone	oxidoreductase,	20	Kd	subunit
NiFeSe_Hases	PF00374.19	gi|257053667|ref|YP_003131500.1|	-	3.8e-29	102.0	0.1	3.8e-14	52.5	0.1	3.1	1	1	2	3	3	3	3	Nickel-dependent	hydrogenase
HycI	PF01750.18	gi|257053668|ref|YP_003131501.1|	-	7.7e-16	58.1	0.0	9.9e-16	57.7	0.0	1.1	1	0	0	1	1	1	1	Hydrogenase	maturation	protease
CBS	PF00571.28	gi|257053669|ref|YP_003131502.1|	-	6.2e-40	135.4	14.3	2.6e-13	50.2	1.4	4.3	4	0	0	4	4	4	4	CBS	domain
sCache_3_2	PF17203.4	gi|257053669|ref|YP_003131502.1|	-	0.0024	18.0	0.2	0.15	12.2	0.0	2.6	2	0	0	2	2	2	1	Single	cache	domain	3
DUF1508	PF07411.12	gi|257053669|ref|YP_003131502.1|	-	0.031	14.1	0.0	0.088	12.7	0.0	1.8	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1508)
CbiX	PF01903.17	gi|257053669|ref|YP_003131502.1|	-	0.086	13.2	0.3	2.8	8.3	0.0	3.1	2	2	1	3	3	3	0	CbiX
MMPL	PF03176.15	gi|257053670|ref|YP_003131503.1|	-	6.9e-35	120.5	49.5	6.5e-20	71.3	26.6	3.0	2	1	0	2	2	2	2	MMPL	family
SecD_SecF	PF02355.16	gi|257053670|ref|YP_003131503.1|	-	1e-07	31.6	23.0	0.00044	19.7	11.7	2.4	2	0	0	2	2	2	2	Protein	export	membrane	protein
Patched	PF02460.18	gi|257053670|ref|YP_003131503.1|	-	0.0059	14.8	21.6	0.0069	14.5	0.5	2.1	2	0	0	2	2	2	2	Patched	family
Sterol-sensing	PF12349.8	gi|257053670|ref|YP_003131503.1|	-	0.0071	16.2	16.4	0.011	15.6	7.5	3.3	3	0	0	3	3	3	1	Sterol-sensing	domain	of	SREBP	cleavage-activation
ATP-synt_S1	PF05827.12	gi|257053670|ref|YP_003131503.1|	-	2	8.2	4.6	19	5.1	0.0	3.5	3	0	0	3	3	3	0	Vacuolar	ATP	synthase	subunit	S1	(ATP6S1)
Sensor	PF13796.6	gi|257053671|ref|YP_003131504.1|	-	9.6e-33	113.5	23.8	9.6e-33	113.5	23.8	1.6	2	0	0	2	2	2	1	Putative	sensor
HTH_20	PF12840.7	gi|257053672|ref|YP_003131505.1|	-	4.5e-05	23.4	0.1	0.00013	22.0	0.0	1.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|257053672|ref|YP_003131505.1|	-	0.00062	19.6	0.1	0.0016	18.3	0.0	1.7	2	0	0	2	2	2	1	MarR	family
PadR	PF03551.14	gi|257053672|ref|YP_003131505.1|	-	0.0016	18.4	0.1	0.007	16.3	0.0	1.9	1	1	1	2	2	2	1	Transcriptional	regulator	PadR-like	family
TrmB	PF01978.19	gi|257053672|ref|YP_003131505.1|	-	0.0029	17.5	0.0	0.0061	16.4	0.0	1.5	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.12	gi|257053672|ref|YP_003131505.1|	-	0.017	15.0	0.0	0.046	13.7	0.1	1.7	2	0	0	2	2	2	0	HTH	domain
HTH_24	PF13412.6	gi|257053672|ref|YP_003131505.1|	-	0.11	12.1	0.2	0.21	11.2	0.0	1.6	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
HTH_36	PF13730.6	gi|257053672|ref|YP_003131505.1|	-	0.14	12.1	0.0	0.2	11.6	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
Oxidored_q2	PF00420.24	gi|257053673|ref|YP_003131506.1|	-	4.2	7.0	13.0	0.38	10.4	3.5	2.1	1	1	1	2	2	2	0	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
DUF1772	PF08592.11	gi|257053674|ref|YP_003131507.1|	-	0.3	11.4	5.5	0.093	13.0	2.8	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1772)
TMEM43	PF07787.12	gi|257053674|ref|YP_003131507.1|	-	0.41	10.0	0.7	0.5	9.7	0.3	1.2	1	1	0	1	1	1	0	Transmembrane	protein	43
SdpI	PF13630.6	gi|257053674|ref|YP_003131507.1|	-	0.79	9.9	4.6	0.16	12.1	0.5	1.8	2	0	0	2	2	2	0	SdpI/YhfL	protein	family
DUF4097	PF13349.6	gi|257053675|ref|YP_003131508.1|	-	2.2e-09	37.0	11.0	1.7e-08	34.2	11.0	2.3	1	1	0	1	1	1	1	Putative	adhesin
TAT_signal	PF10518.9	gi|257053675|ref|YP_003131508.1|	-	0.42	10.5	2.4	0.8	9.6	2.4	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
GATase	PF00117.28	gi|257053676|ref|YP_003131509.1|	-	3.7e-19	69.2	0.0	5.2e-19	68.8	0.0	1.1	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|257053676|ref|YP_003131509.1|	-	6.2e-06	26.1	0.3	0.0002	21.2	0.3	2.3	1	1	0	1	1	1	1	Peptidase	C26
HTS	PF04204.16	gi|257053676|ref|YP_003131509.1|	-	0.00012	21.1	0.0	0.00017	20.7	0.0	1.2	1	0	0	1	1	1	1	Homoserine	O-succinyltransferase
Egh16-like	PF11327.8	gi|257053676|ref|YP_003131509.1|	-	0.055	13.9	0.0	0.079	13.4	0.0	1.2	1	0	0	1	1	1	0	Egh16-like	virulence	factor
GCS2	PF04107.13	gi|257053677|ref|YP_003131510.1|	-	2.8e-12	46.6	0.2	4.1e-12	46.0	0.2	1.2	1	0	0	1	1	1	1	Glutamate-cysteine	ligase	family	2(GCS2)
SopA_C	PF13979.6	gi|257053677|ref|YP_003131510.1|	-	0.0046	16.7	0.0	0.0077	16.0	0.0	1.3	1	0	0	1	1	1	1	SopA-like	catalytic	domain
AAA	PF00004.29	gi|257053680|ref|YP_003131513.1|	-	6.9e-101	333.9	0.0	2.8e-49	166.9	0.0	2.4	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
CDC48_N	PF02359.18	gi|257053680|ref|YP_003131513.1|	-	1.9e-30	104.9	0.0	8.3e-30	102.8	0.1	2.1	2	0	0	2	2	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
AAA_lid_3	PF17862.1	gi|257053680|ref|YP_003131513.1|	-	2.7e-29	100.7	2.5	7.2e-15	54.5	0.7	2.5	2	0	0	2	2	2	2	AAA+	lid	domain
CDC48_2	PF02933.17	gi|257053680|ref|YP_003131513.1|	-	8.5e-17	60.7	0.1	7.1e-16	57.8	0.2	2.5	3	0	0	3	3	2	1	Cell	division	protein	48	(CDC48),	domain	2
RuvB_N	PF05496.12	gi|257053680|ref|YP_003131513.1|	-	6e-15	55.3	0.0	9.8e-07	28.6	0.0	2.8	3	0	0	3	3	2	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_16	PF13191.6	gi|257053680|ref|YP_003131513.1|	-	5.7e-14	52.8	1.4	4.2e-06	27.3	0.2	4.1	2	2	1	3	3	3	2	AAA	ATPase	domain
AAA_2	PF07724.14	gi|257053680|ref|YP_003131513.1|	-	4.3e-13	49.8	0.0	1.2e-05	25.5	0.0	2.7	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
AAA_5	PF07728.14	gi|257053680|ref|YP_003131513.1|	-	6.8e-12	45.6	2.0	7.7e-05	22.7	0.1	4.4	3	2	0	3	3	2	2	AAA	domain	(dynein-related	subfamily)
AAA_22	PF13401.6	gi|257053680|ref|YP_003131513.1|	-	5.8e-11	42.8	0.5	0.00095	19.4	0.0	4.1	2	2	1	4	4	4	2	AAA	domain
AAA_33	PF13671.6	gi|257053680|ref|YP_003131513.1|	-	7.3e-11	42.4	0.0	4.6e-05	23.6	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
TIP49	PF06068.13	gi|257053680|ref|YP_003131513.1|	-	1.4e-10	41.0	0.0	0.00037	19.8	0.0	3.3	3	0	0	3	3	3	2	TIP49	P-loop	domain
AAA_25	PF13481.6	gi|257053680|ref|YP_003131513.1|	-	2.1e-07	30.7	0.7	0.83	9.2	0.0	4.4	4	0	0	4	4	4	2	AAA	domain
AAA_14	PF13173.6	gi|257053680|ref|YP_003131513.1|	-	4.2e-07	30.1	0.0	0.0065	16.5	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
IstB_IS21	PF01695.17	gi|257053680|ref|YP_003131513.1|	-	4.6e-07	29.7	0.0	0.037	13.7	0.0	2.4	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
Mg_chelatase	PF01078.21	gi|257053680|ref|YP_003131513.1|	-	7.4e-07	28.8	0.4	0.042	13.2	0.0	2.8	3	0	0	3	3	3	2	Magnesium	chelatase,	subunit	ChlI
RNA_helicase	PF00910.22	gi|257053680|ref|YP_003131513.1|	-	9e-07	29.3	0.0	0.057	13.8	0.0	2.7	2	0	0	2	2	2	2	RNA	helicase
AAA_18	PF13238.6	gi|257053680|ref|YP_003131513.1|	-	1.1e-06	29.2	0.0	0.071	13.7	0.0	2.8	2	0	0	2	2	2	2	AAA	domain
AAA_7	PF12775.7	gi|257053680|ref|YP_003131513.1|	-	4.6e-06	26.3	0.0	0.082	12.4	0.0	2.5	2	0	0	2	2	2	2	P-loop	containing	dynein	motor	region
Sigma54_activat	PF00158.26	gi|257053680|ref|YP_003131513.1|	-	6e-06	26.1	0.0	0.22	11.2	0.0	3.1	3	0	0	3	3	3	2	Sigma-54	interaction	domain
AAA_3	PF07726.11	gi|257053680|ref|YP_003131513.1|	-	9.7e-06	25.5	0.0	0.12	12.3	0.0	2.5	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_28	PF13521.6	gi|257053680|ref|YP_003131513.1|	-	1.2e-05	25.7	0.0	0.037	14.3	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
ATPase	PF06745.13	gi|257053680|ref|YP_003131513.1|	-	1.2e-05	24.8	0.6	0.5	9.7	0.0	3.5	4	0	0	4	4	3	2	KaiC
TsaE	PF02367.17	gi|257053680|ref|YP_003131513.1|	-	2.4e-05	24.3	0.0	0.2	11.6	0.0	2.4	2	0	0	2	2	2	2	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
DUF815	PF05673.13	gi|257053680|ref|YP_003131513.1|	-	4.7e-05	22.7	0.0	0.21	10.7	0.0	2.4	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
PhoH	PF02562.16	gi|257053680|ref|YP_003131513.1|	-	6e-05	22.6	0.3	0.51	9.8	0.0	3.2	3	0	0	3	3	3	2	PhoH-like	protein
AAA_24	PF13479.6	gi|257053680|ref|YP_003131513.1|	-	7.8e-05	22.5	0.0	0.23	11.2	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
AAA_30	PF13604.6	gi|257053680|ref|YP_003131513.1|	-	9.6e-05	22.2	0.1	0.66	9.7	0.0	2.8	2	0	0	2	2	2	2	AAA	domain
ABC_tran	PF00005.27	gi|257053680|ref|YP_003131513.1|	-	0.00011	22.7	0.0	0.78	10.2	0.0	2.6	2	0	0	2	2	2	2	ABC	transporter
AAA_11	PF13086.6	gi|257053680|ref|YP_003131513.1|	-	0.00014	21.7	0.1	0.31	10.8	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
NB-ARC	PF00931.22	gi|257053680|ref|YP_003131513.1|	-	0.00018	20.8	0.0	0.18	11.0	0.0	2.4	2	0	0	2	2	2	2	NB-ARC	domain
ATPase_2	PF01637.18	gi|257053680|ref|YP_003131513.1|	-	0.0003	20.8	0.0	1.1	9.1	0.0	3.5	2	2	1	3	3	3	1	ATPase	domain	predominantly	from	Archaea
Parvo_NS1	PF01057.17	gi|257053680|ref|YP_003131513.1|	-	0.00035	19.7	0.0	0.39	9.7	0.0	2.2	2	0	0	2	2	2	2	Parvovirus	non-structural	protein	NS1
DUF2075	PF09848.9	gi|257053680|ref|YP_003131513.1|	-	0.00038	19.8	0.0	0.41	9.8	0.0	2.2	2	0	0	2	2	2	2	Uncharacterized	conserved	protein	(DUF2075)
NACHT	PF05729.12	gi|257053680|ref|YP_003131513.1|	-	0.00048	20.1	0.1	0.55	10.1	0.0	3.0	3	0	0	3	3	2	1	NACHT	domain
AAA_17	PF13207.6	gi|257053680|ref|YP_003131513.1|	-	0.00055	20.4	0.0	1.5	9.2	0.0	3.4	3	0	0	3	3	3	1	AAA	domain
Zeta_toxin	PF06414.12	gi|257053680|ref|YP_003131513.1|	-	0.0013	18.1	0.3	1.7	7.8	0.0	2.6	2	0	0	2	2	2	2	Zeta	toxin
Sigma54_activ_2	PF14532.6	gi|257053680|ref|YP_003131513.1|	-	0.0016	18.6	0.0	2.6	8.1	0.0	2.5	2	0	0	2	2	2	1	Sigma-54	interaction	domain
AAA_19	PF13245.6	gi|257053680|ref|YP_003131513.1|	-	0.0017	18.7	0.6	2.6	8.4	0.0	2.8	2	1	0	3	3	2	1	AAA	domain
NTPase_1	PF03266.15	gi|257053680|ref|YP_003131513.1|	-	0.0019	18.2	1.2	3.9	7.3	0.0	3.7	4	1	1	5	5	3	0	NTPase
IPT	PF01745.16	gi|257053680|ref|YP_003131513.1|	-	0.0023	17.4	0.9	0.68	9.3	0.0	2.8	3	0	0	3	3	3	1	Isopentenyl	transferase
Vps4_C	PF09336.10	gi|257053680|ref|YP_003131513.1|	-	0.0031	17.5	0.5	0.74	9.9	0.0	3.0	3	0	0	3	3	2	1	Vps4	C	terminal	oligomerisation	domain
Bac_DnaA	PF00308.18	gi|257053680|ref|YP_003131513.1|	-	0.009	15.9	0.0	5.5	6.7	0.0	2.6	2	0	0	2	2	2	0	Bacterial	dnaA	protein
KAP_NTPase	PF07693.14	gi|257053680|ref|YP_003131513.1|	-	0.0095	15.2	0.1	3.8	6.7	0.0	3.3	3	1	1	4	4	4	0	KAP	family	P-loop	domain
Cytidylate_kin	PF02224.18	gi|257053680|ref|YP_003131513.1|	-	0.013	15.2	0.1	4.4	7.0	0.0	2.5	2	0	0	2	2	2	0	Cytidylate	kinase
Viral_helicase1	PF01443.18	gi|257053680|ref|YP_003131513.1|	-	0.017	14.9	0.0	1.4	8.6	0.0	2.2	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
CPT	PF07931.12	gi|257053680|ref|YP_003131513.1|	-	0.024	14.5	0.0	3.9	7.3	0.0	2.4	2	0	0	2	2	2	0	Chloramphenicol	phosphotransferase-like	protein
Hydin_ADK	PF17213.3	gi|257053680|ref|YP_003131513.1|	-	0.049	13.9	0.0	4.1	7.6	0.0	2.3	2	0	0	2	2	2	0	Hydin	Adenylate	kinase-like	domain
ResIII	PF04851.15	gi|257053680|ref|YP_003131513.1|	-	0.062	13.3	0.0	14	5.7	0.0	2.5	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
Zot	PF05707.12	gi|257053680|ref|YP_003131513.1|	-	0.071	12.7	0.0	3.6	7.2	0.0	2.5	2	0	0	2	2	2	0	Zonular	occludens	toxin	(Zot)
SKI	PF01202.22	gi|257053680|ref|YP_003131513.1|	-	0.073	13.2	0.1	7.7	6.6	0.0	2.4	2	0	0	2	2	2	0	Shikimate	kinase
Torsin	PF06309.11	gi|257053680|ref|YP_003131513.1|	-	0.074	13.2	0.0	4.8	7.3	0.0	2.4	2	0	0	2	2	2	0	Torsin
AFG1_ATPase	PF03969.16	gi|257053680|ref|YP_003131513.1|	-	0.081	11.8	0.0	4.7	6.0	0.0	2.2	2	0	0	2	2	2	0	AFG1-like	ATPase
Rad17	PF03215.15	gi|257053680|ref|YP_003131513.1|	-	0.1	12.5	0.0	11	5.8	0.0	2.7	2	1	0	2	2	2	0	Rad17	P-loop	domain
Cytidylate_kin2	PF13189.6	gi|257053680|ref|YP_003131513.1|	-	0.16	12.1	0.0	8.6	6.5	0.0	2.3	2	0	0	2	2	2	0	Cytidylate	kinase-like	family
zf-ribbon_3	PF13248.6	gi|257053681|ref|YP_003131514.1|	-	0.0021	17.4	4.0	0.17	11.4	0.9	2.3	2	0	0	2	2	2	2	zinc-ribbon	domain
HypA	PF01155.19	gi|257053681|ref|YP_003131514.1|	-	0.0026	17.8	0.1	0.0028	17.6	0.1	1.1	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Rubredoxin_2	PF18073.1	gi|257053681|ref|YP_003131514.1|	-	0.018	14.7	1.0	0.018	14.7	1.0	2.3	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
zf-C2HC5	PF06221.13	gi|257053681|ref|YP_003131514.1|	-	0.055	13.5	0.4	0.084	12.9	0.4	1.2	1	0	0	1	1	1	0	Putative	zinc	finger	motif,	C2HC5-type
DZR	PF12773.7	gi|257053681|ref|YP_003131514.1|	-	0.087	12.9	1.2	0.4	10.8	1.2	1.6	1	1	0	1	1	1	0	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|257053681|ref|YP_003131514.1|	-	0.16	11.7	3.7	1.3	8.9	3.6	2.1	1	1	0	1	1	1	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|257053681|ref|YP_003131514.1|	-	0.4	10.8	3.4	0.88	9.7	3.5	1.5	1	1	0	1	1	1	0	Zinc	ribbon	domain
Anti-TRAP	PF15777.5	gi|257053681|ref|YP_003131514.1|	-	0.42	10.6	3.5	0.76	9.8	3.5	1.4	1	0	0	1	1	1	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
VATC	PF18716.1	gi|257053681|ref|YP_003131514.1|	-	0.97	9.3	4.1	1.5	8.7	0.2	2.1	2	0	0	2	2	2	0	Vms1-associating	treble	clef	domain
HscB_4_cys	PF18256.1	gi|257053681|ref|YP_003131514.1|	-	1.6	8.7	8.5	44	4.0	9.1	2.4	1	1	1	2	2	2	0	Co-chaperone	HscB	tetracysteine	metal	binding	motif
Abhydrolase_1	PF00561.20	gi|257053682|ref|YP_003131515.1|	-	1.7e-28	100.0	0.3	2.1e-28	99.7	0.3	1.1	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
Esterase	PF00756.20	gi|257053682|ref|YP_003131515.1|	-	0.016	14.9	0.1	0.063	12.9	0.0	1.9	2	0	0	2	2	2	0	Putative	esterase
Hydrolase_4	PF12146.8	gi|257053682|ref|YP_003131515.1|	-	0.018	14.3	0.0	0.034	13.4	0.0	1.4	1	0	0	1	1	1	0	Serine	aminopeptidase,	S33
Peptidase_S9	PF00326.21	gi|257053682|ref|YP_003131515.1|	-	0.022	14.2	0.1	3.7	6.9	0.0	2.4	2	0	0	2	2	2	0	Prolyl	oligopeptidase	family
Abhydrolase_4	PF08386.10	gi|257053682|ref|YP_003131515.1|	-	0.11	12.6	0.0	0.26	11.4	0.0	1.6	1	0	0	1	1	1	0	TAP-like	protein
Cys_Met_Meta_PP	PF01053.20	gi|257053683|ref|YP_003131516.1|	-	7e-134	446.1	0.0	7.9e-134	446.0	0.0	1.0	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_1_2	PF00155.21	gi|257053683|ref|YP_003131516.1|	-	1.6e-07	30.8	0.0	2.6e-07	30.2	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Aminotran_5	PF00266.19	gi|257053683|ref|YP_003131516.1|	-	0.00017	20.7	0.1	0.0003	19.9	0.1	1.3	1	0	0	1	1	1	1	Aminotransferase	class-V
DegT_DnrJ_EryC1	PF01041.17	gi|257053683|ref|YP_003131516.1|	-	0.00047	19.6	0.6	0.00089	18.7	0.6	1.4	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
AP2	PF00847.20	gi|257053683|ref|YP_003131516.1|	-	0.13	12.5	1.2	1.1	9.6	0.3	2.5	3	0	0	3	3	3	0	AP2	domain
PLDc_2	PF13091.6	gi|257053686|ref|YP_003131519.1|	-	7.1e-14	51.8	0.0	4.6e-08	33.0	0.0	2.2	2	0	0	2	2	2	2	PLD-like	domain
PLDc	PF00614.22	gi|257053686|ref|YP_003131519.1|	-	6.2e-05	23.0	0.0	0.056	13.7	0.0	2.5	2	0	0	2	2	2	2	Phospholipase	D	Active	site	motif
DUF1080	PF06439.11	gi|257053687|ref|YP_003131520.1|	-	0.00072	19.7	0.0	0.42	10.7	0.0	2.7	2	0	0	2	2	2	2	Domain	of	Unknown	Function	(DUF1080)
Aminotran_5	PF00266.19	gi|257053688|ref|YP_003131521.1|	-	3.9e-29	101.7	0.0	5.1e-29	101.4	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-V
SepSecS	PF05889.13	gi|257053688|ref|YP_003131521.1|	-	0.12	11.0	0.0	0.18	10.4	0.0	1.3	1	0	0	1	1	1	0	O-phosphoseryl-tRNA(Sec)	selenium	transferase,	SepSecS
Fic	PF02661.18	gi|257053689|ref|YP_003131522.1|	-	7e-19	68.5	0.1	2.7e-18	66.7	0.0	1.9	2	0	0	2	2	2	1	Fic/DOC	family
Fic_N	PF13784.6	gi|257053689|ref|YP_003131522.1|	-	1.3e-16	60.4	0.1	2.4e-16	59.5	0.1	1.5	1	0	0	1	1	1	1	Fic/DOC	family	N-terminal
HTH_DeoR	PF08220.12	gi|257053689|ref|YP_003131522.1|	-	9.9e-06	25.2	0.1	2.2e-05	24.1	0.1	1.6	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_13	PF11972.8	gi|257053689|ref|YP_003131522.1|	-	0.0016	18.5	1.0	0.0039	17.2	0.0	2.1	3	0	0	3	3	3	1	HTH	DNA	binding	domain
HTH_11	PF08279.12	gi|257053689|ref|YP_003131522.1|	-	0.0025	17.7	0.0	0.0048	16.8	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
HTH_17	PF12728.7	gi|257053689|ref|YP_003131522.1|	-	0.0041	17.3	0.0	0.0095	16.1	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
GntR	PF00392.21	gi|257053689|ref|YP_003131522.1|	-	0.0085	15.7	0.1	0.022	14.4	0.1	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
TrmB	PF01978.19	gi|257053689|ref|YP_003131522.1|	-	0.013	15.4	0.1	0.05	13.5	0.0	2.0	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
Oest_recep	PF02159.15	gi|257053689|ref|YP_003131522.1|	-	0.13	12.8	0.0	0.23	11.9	0.0	1.4	1	0	0	1	1	1	0	Oestrogen	receptor
DUF5635	PF18685.1	gi|257053689|ref|YP_003131522.1|	-	0.13	12.2	0.0	0.24	11.3	0.0	1.3	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5635)
Ribosomal_S25	PF03297.15	gi|257053689|ref|YP_003131522.1|	-	0.18	12.0	0.0	0.3	11.3	0.0	1.3	1	0	0	1	1	1	0	S25	ribosomal	protein
DNA_ligase_aden	PF01653.18	gi|257053690|ref|YP_003131523.1|	-	2.2e-106	355.6	0.0	1.1e-105	353.3	0.0	1.8	2	0	0	2	2	2	1	NAD-dependent	DNA	ligase	adenylation	domain
DNA_ligase_OB	PF03120.16	gi|257053690|ref|YP_003131523.1|	-	1.4e-29	101.8	2.5	3e-29	100.7	2.5	1.6	1	0	0	1	1	1	1	NAD-dependent	DNA	ligase	OB-fold	domain
HHH_2	PF12826.7	gi|257053690|ref|YP_003131523.1|	-	4.8e-19	68.2	0.8	2.1e-18	66.2	0.1	2.6	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
HHH_5	PF14520.6	gi|257053690|ref|YP_003131523.1|	-	2.6e-15	56.7	0.3	2.6e-08	34.3	0.0	2.7	2	0	0	2	2	2	2	Helix-hairpin-helix	domain
BRCT	PF00533.26	gi|257053690|ref|YP_003131523.1|	-	9.1e-14	51.6	0.0	2e-13	50.5	0.0	1.5	1	0	0	1	1	1	1	BRCA1	C	Terminus	(BRCT)	domain
HHH	PF00633.23	gi|257053690|ref|YP_003131523.1|	-	1.3e-07	31.1	0.0	4.5e-06	26.3	0.0	3.3	3	0	0	3	3	3	1	Helix-hairpin-helix	motif
DNA_ligase_ZBD	PF03119.16	gi|257053690|ref|YP_003131523.1|	-	4.6e-05	23.3	3.9	0.00012	22.0	3.9	1.8	1	0	0	1	1	1	1	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
HHH_8	PF14716.6	gi|257053690|ref|YP_003131523.1|	-	0.0095	16.3	0.6	0.43	11.0	0.0	3.7	3	1	0	3	3	3	1	Helix-hairpin-helix	domain
IPPT	PF01715.17	gi|257053690|ref|YP_003131523.1|	-	0.072	12.9	0.0	0.27	11.0	0.0	1.9	2	0	0	2	2	2	0	IPP	transferase
Pirin	PF02678.16	gi|257053691|ref|YP_003131524.1|	-	1e-13	51.2	1.4	2.3e-13	50.0	0.3	1.9	2	0	0	2	2	2	1	Pirin
Pirin_C_2	PF17954.1	gi|257053691|ref|YP_003131524.1|	-	2.2e-06	27.8	0.0	3.6e-06	27.1	0.0	1.3	1	0	0	1	1	1	1	Quercetinase	C-terminal	cupin	domain
Pirin_C	PF05726.13	gi|257053691|ref|YP_003131524.1|	-	1.2e-05	25.6	0.0	3.3e-05	24.2	0.0	1.7	2	0	0	2	2	2	1	Pirin	C-terminal	cupin	domain
Cupin_2	PF07883.11	gi|257053691|ref|YP_003131524.1|	-	0.033	13.9	0.2	1.4	8.7	0.1	2.4	2	0	0	2	2	2	0	Cupin	domain
ABC2_membrane_2	PF12679.7	gi|257053692|ref|YP_003131525.1|	-	1.2e-30	106.8	16.8	1.1e-28	100.4	16.8	2.0	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.24	gi|257053692|ref|YP_003131525.1|	-	2e-06	27.4	15.4	5.3e-06	26.0	15.4	1.8	1	1	0	1	1	1	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.7	gi|257053692|ref|YP_003131525.1|	-	0.00095	18.4	17.6	0.00095	18.4	17.6	1.3	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_5	PF13346.6	gi|257053692|ref|YP_003131525.1|	-	0.0019	17.8	9.5	0.0039	16.8	9.5	1.5	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC_tran	PF00005.27	gi|257053693|ref|YP_003131526.1|	-	4.4e-26	92.0	0.0	6.9e-26	91.4	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|257053693|ref|YP_003131526.1|	-	2.7e-12	47.1	0.0	8.9e-07	29.0	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
DUF4162	PF13732.6	gi|257053693|ref|YP_003131526.1|	-	0.00031	21.4	0.0	0.00088	19.9	0.0	1.8	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4162)
AAA_29	PF13555.6	gi|257053693|ref|YP_003131526.1|	-	0.0045	16.7	0.1	0.0099	15.6	0.1	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|257053693|ref|YP_003131526.1|	-	0.0051	17.3	0.1	0.0077	16.7	0.1	1.2	1	0	0	1	1	1	1	AAA	domain
IstB_IS21	PF01695.17	gi|257053693|ref|YP_003131526.1|	-	0.031	14.0	0.0	1.8	8.3	0.0	2.2	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
RsgA_GTPase	PF03193.16	gi|257053693|ref|YP_003131526.1|	-	0.11	12.4	0.0	0.19	11.7	0.0	1.4	1	0	0	1	1	1	0	RsgA	GTPase
AAA_27	PF13514.6	gi|257053693|ref|YP_003131526.1|	-	0.16	11.5	0.0	0.62	9.6	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
AAA_22	PF13401.6	gi|257053693|ref|YP_003131526.1|	-	0.16	12.2	0.0	0.42	10.9	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
ABC2_membrane_2	PF12679.7	gi|257053695|ref|YP_003131528.1|	-	9.9e-44	149.7	18.7	1.9e-43	148.8	18.7	1.4	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.7	gi|257053695|ref|YP_003131528.1|	-	2.5e-13	49.9	16.4	2.5e-13	49.9	16.4	1.7	1	1	1	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.7	gi|257053695|ref|YP_003131528.1|	-	2.3e-08	34.2	10.2	2.3e-08	34.2	10.2	1.8	2	0	0	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_5	PF13346.6	gi|257053695|ref|YP_003131528.1|	-	1.2e-06	28.2	14.5	6.1e-06	25.9	14.4	2.0	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.24	gi|257053695|ref|YP_003131528.1|	-	7.6e-06	25.5	15.1	7.6e-06	25.5	15.1	1.6	2	0	0	2	2	2	1	ABC-2	type	transporter
Chs7	PF12271.8	gi|257053695|ref|YP_003131528.1|	-	0.12	11.7	10.2	0.55	9.5	0.7	2.1	2	0	0	2	2	2	0	Chitin	synthase	export	chaperone
OST3_OST6	PF04756.13	gi|257053695|ref|YP_003131528.1|	-	0.13	11.6	0.3	0.29	10.4	0.3	1.7	1	1	0	1	1	1	0	OST3	/	OST6	family,	transporter	family
DUF2663	PF10864.8	gi|257053695|ref|YP_003131528.1|	-	9.8	6.6	6.1	2.3	8.6	0.5	2.4	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF2663)
ABC_tran	PF00005.27	gi|257053696|ref|YP_003131529.1|	-	1.1e-29	103.7	0.0	1.8e-29	103.0	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|257053696|ref|YP_003131529.1|	-	1.5e-14	54.5	0.2	5.3e-10	39.6	0.0	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
DUF4162	PF13732.6	gi|257053696|ref|YP_003131529.1|	-	7.2e-10	39.5	0.0	2.3e-09	37.9	0.0	1.9	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4162)
AAA_30	PF13604.6	gi|257053696|ref|YP_003131529.1|	-	0.013	15.3	0.0	0.036	13.8	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_29	PF13555.6	gi|257053696|ref|YP_003131529.1|	-	0.018	14.8	0.0	0.035	13.9	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|257053696|ref|YP_003131529.1|	-	0.019	15.4	0.2	0.033	14.7	0.2	1.3	1	0	0	1	1	1	0	AAA	domain
SMC_N	PF02463.19	gi|257053696|ref|YP_003131529.1|	-	0.025	14.0	0.1	2.1	7.7	0.1	2.2	1	1	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
RsgA_GTPase	PF03193.16	gi|257053696|ref|YP_003131529.1|	-	0.082	12.8	0.0	0.16	11.9	0.0	1.4	1	0	0	1	1	1	0	RsgA	GTPase
IstB_IS21	PF01695.17	gi|257053696|ref|YP_003131529.1|	-	0.084	12.6	0.0	1.4	8.6	0.0	2.1	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
AAA_7	PF12775.7	gi|257053696|ref|YP_003131529.1|	-	0.13	11.7	0.0	0.2	11.1	0.0	1.2	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
SLATT_2	PF18183.1	gi|257053698|ref|YP_003131531.1|	-	0.029	14.2	0.2	0.031	14.1	0.2	1.0	1	0	0	1	1	1	0	SMODS	and	SLOG-associating	2TM	effector	domain	2
OAD_beta	PF03977.13	gi|257053700|ref|YP_003131533.1|	-	0.0085	15.1	1.1	0.0099	14.9	1.1	1.2	1	0	0	1	1	1	1	Na+-transporting	oxaloacetate	decarboxylase	beta	subunit
DUF3021	PF11457.8	gi|257053700|ref|YP_003131533.1|	-	0.59	10.5	2.3	0.91	9.9	2.3	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3021)
UvrC_HhH_N	PF08459.11	gi|257053701|ref|YP_003131534.1|	-	6.4e-41	139.8	0.0	9.9e-41	139.2	0.0	1.3	1	0	0	1	1	1	1	UvrC	Helix-hairpin-helix	N-terminal
HHH_5	PF14520.6	gi|257053701|ref|YP_003131534.1|	-	1.1e-09	38.7	0.0	2.6e-09	37.5	0.0	1.7	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
HHH	PF00633.23	gi|257053701|ref|YP_003131534.1|	-	5e-09	35.6	0.4	2.3e-06	27.2	0.1	2.7	2	0	0	2	2	2	2	Helix-hairpin-helix	motif
GIY-YIG	PF01541.24	gi|257053701|ref|YP_003131534.1|	-	2.7e-07	30.7	0.0	4.4e-07	30.1	0.0	1.3	1	0	0	1	1	1	1	GIY-YIG	catalytic	domain
HHH_2	PF12826.7	gi|257053701|ref|YP_003131534.1|	-	7.1e-07	29.2	0.0	1.7e-06	28.0	0.0	1.7	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
UVR	PF02151.19	gi|257053701|ref|YP_003131534.1|	-	1.6e-06	27.6	3.4	4.9e-06	26.1	1.1	2.5	2	0	0	2	2	2	1	UvrB/uvrC	motif
IMS_HHH	PF11798.8	gi|257053701|ref|YP_003131534.1|	-	0.0057	16.9	0.0	2.5	8.6	0.0	2.6	2	0	0	2	2	2	1	IMS	family	HHH	motif
HHH_8	PF14716.6	gi|257053701|ref|YP_003131534.1|	-	0.0081	16.5	0.0	3	8.3	0.0	2.7	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
HHH_3	PF12836.7	gi|257053701|ref|YP_003131534.1|	-	0.05	13.9	0.0	0.31	11.3	0.0	2.2	2	0	0	2	2	2	0	Helix-hairpin-helix	motif
5_3_exonuc	PF01367.20	gi|257053701|ref|YP_003131534.1|	-	0.076	13.6	0.0	1.1	9.9	0.0	2.5	1	1	0	1	1	1	0	5'-3'	exonuclease,	C-terminal	SAM	fold
DUF234	PF03008.14	gi|257053702|ref|YP_003131535.1|	-	6.7e-24	84.2	0.0	1.7e-23	82.9	0.0	1.7	2	0	0	2	2	1	1	Archaea	bacterial	proteins	of	unknown	function
ATPase_2	PF01637.18	gi|257053702|ref|YP_003131535.1|	-	5.8e-16	59.1	0.0	1.4e-14	54.6	0.0	2.1	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA_14	PF13173.6	gi|257053702|ref|YP_003131535.1|	-	7e-07	29.3	0.0	1.3e-06	28.5	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
MarR_2	PF12802.7	gi|257053702|ref|YP_003131535.1|	-	0.00012	21.9	0.1	0.00034	20.5	0.0	1.7	2	0	0	2	2	1	1	MarR	family
HTH_IclR	PF09339.10	gi|257053702|ref|YP_003131535.1|	-	0.00018	21.2	0.1	0.00052	19.8	0.1	1.8	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
AAA_16	PF13191.6	gi|257053702|ref|YP_003131535.1|	-	0.001	19.5	0.3	0.01	16.3	0.1	2.5	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_25	PF13481.6	gi|257053702|ref|YP_003131535.1|	-	0.0022	17.6	0.0	0.085	12.4	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
HTH_45	PF14947.6	gi|257053702|ref|YP_003131535.1|	-	0.0028	17.6	0.0	0.0054	16.7	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix
AAA_22	PF13401.6	gi|257053702|ref|YP_003131535.1|	-	0.0035	17.6	0.0	0.01	16.1	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
MarR	PF01047.22	gi|257053702|ref|YP_003131535.1|	-	0.012	15.6	0.0	0.023	14.6	0.0	1.4	1	0	0	1	1	1	0	MarR	family
TrmB	PF01978.19	gi|257053702|ref|YP_003131535.1|	-	0.013	15.3	0.0	0.026	14.4	0.0	1.5	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.6	gi|257053702|ref|YP_003131535.1|	-	0.054	14.0	0.0	0.11	13.0	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_20	PF12840.7	gi|257053702|ref|YP_003131535.1|	-	0.062	13.4	0.1	0.37	10.9	0.0	2.2	3	0	0	3	3	3	0	Helix-turn-helix	domain
AAA_24	PF13479.6	gi|257053702|ref|YP_003131535.1|	-	0.081	12.6	0.0	0.14	11.8	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
HTH_5	PF01022.20	gi|257053702|ref|YP_003131535.1|	-	0.15	11.9	0.0	0.34	10.8	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Gpr1_Fun34_YaaH	PF01184.19	gi|257053703|ref|YP_003131536.1|	-	0.0055	16.3	9.3	0.0055	16.3	9.3	1.7	1	1	0	1	1	1	1	GPR1/FUN34/yaaH	family
DUF4225	PF13988.6	gi|257053703|ref|YP_003131536.1|	-	0.24	10.9	1.2	0.42	10.2	1.2	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4225)
SelR	PF01641.18	gi|257053704|ref|YP_003131537.1|	-	1.3e-49	167.3	0.0	1.4e-49	167.2	0.0	1.0	1	0	0	1	1	1	1	SelR	domain
Yippee-Mis18	PF03226.14	gi|257053704|ref|YP_003131537.1|	-	0.00012	22.2	0.0	0.00019	21.6	0.0	1.3	1	0	0	1	1	1	1	Yippee	zinc-binding/DNA-binding	/Mis18,	centromere	assembly
COX5B	PF01215.19	gi|257053704|ref|YP_003131537.1|	-	0.086	12.5	0.0	2.7	7.7	0.0	2.1	2	0	0	2	2	2	0	Cytochrome	c	oxidase	subunit	Vb
TF_Zn_Ribbon	PF08271.12	gi|257053704|ref|YP_003131537.1|	-	0.25	10.9	7.3	2.9	7.5	1.0	3.2	3	1	0	3	3	3	0	TFIIB	zinc-binding
Yip1	PF04893.17	gi|257053705|ref|YP_003131538.1|	-	0.32	10.7	0.1	0.32	10.7	0.1	2.4	2	1	0	2	2	2	0	Yip1	domain
TrbC	PF04956.13	gi|257053705|ref|YP_003131538.1|	-	6	7.2	7.9	0.68	10.2	1.1	2.5	1	1	1	2	2	2	0	TrbC/VIRB2	family
MAF_flag10	PF01973.18	gi|257053706|ref|YP_003131539.1|	-	5.5e-17	62.0	0.0	7.1e-17	61.6	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF115
FBPase_glpX	PF03320.13	gi|257053706|ref|YP_003131539.1|	-	0.1	11.4	0.0	0.14	11.0	0.0	1.2	1	0	0	1	1	1	0	Bacterial	fructose-1,6-bisphosphatase,	glpX-encoded
Pterin_bind	PF00809.22	gi|257053707|ref|YP_003131540.1|	-	5.3e-42	144.2	0.0	6.3e-42	143.9	0.0	1.1	1	0	0	1	1	1	1	Pterin	binding	enzyme
NST1	PF13945.6	gi|257053708|ref|YP_003131541.1|	-	0.18	11.9	2.2	0.39	10.8	2.2	1.4	1	0	0	1	1	1	0	Salt	tolerance	down-regulator
FG-GAP	PF01839.23	gi|257053711|ref|YP_003131544.1|	-	0.19	11.9	1.3	18	5.6	0.5	2.6	2	0	0	2	2	2	0	FG-GAP	repeat
Peptidase_M10	PF00413.24	gi|257053713|ref|YP_003131546.1|	-	0.059	13.2	0.0	0.061	13.2	0.0	1.0	1	0	0	1	1	1	0	Matrixin
SpoU_methylase	PF00588.19	gi|257053717|ref|YP_003131550.1|	-	1.1e-29	103.4	0.0	1.5e-29	103.0	0.0	1.2	1	0	0	1	1	1	1	SpoU	rRNA	Methylase	family
Methyltrn_RNA_4	PF09936.9	gi|257053717|ref|YP_003131550.1|	-	0.0064	16.4	0.0	0.11	12.4	0.0	2.3	2	1	0	2	2	2	1	SAM-dependent	RNA	methyltransferase
YdjM	PF04307.14	gi|257053718|ref|YP_003131551.1|	-	0.00016	21.0	6.0	0.00021	20.6	6.0	1.1	1	0	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
Ploopntkinase3	PF18751.1	gi|257053718|ref|YP_003131551.1|	-	0.2	11.6	0.0	0.26	11.2	0.0	1.3	1	0	0	1	1	1	0	P-loop	Nucleotide	Kinase3
GatB_N	PF02934.15	gi|257053719|ref|YP_003131552.1|	-	1.3e-65	221.5	0.0	1.8e-65	221.1	0.0	1.2	1	0	0	1	1	1	1	GatB/GatE	catalytic	domain
GatB_Yqey	PF02637.18	gi|257053719|ref|YP_003131552.1|	-	2.9e-20	72.7	0.0	5.9e-20	71.6	0.0	1.6	1	0	0	1	1	1	1	GatB	domain
GAD	PF02938.14	gi|257053719|ref|YP_003131552.1|	-	5.3e-12	45.8	0.0	1.7e-11	44.2	0.0	1.9	1	1	0	1	1	1	1	GAD	domain
YqeY	PF09424.10	gi|257053719|ref|YP_003131552.1|	-	0.02	15.0	0.2	0.044	13.8	0.2	1.6	1	0	0	1	1	1	0	Yqey-like	protein
Glyco_hydro_30C	PF17189.4	gi|257053720|ref|YP_003131553.1|	-	0.056	13.7	0.3	0.13	12.5	0.3	1.7	1	0	0	1	1	1	0	Glycosyl	hydrolase	family	30	beta	sandwich	domain
Lyase_1	PF00206.20	gi|257053721|ref|YP_003131554.1|	-	4e-107	358.2	0.0	5.9e-107	357.7	0.0	1.2	1	0	0	1	1	1	1	Lyase
FumaraseC_C	PF10415.9	gi|257053721|ref|YP_003131554.1|	-	4.6e-25	87.8	6.3	3.8e-24	84.8	1.1	3.3	3	0	0	3	3	3	1	Fumarase	C	C-terminus
ADSL_C	PF10397.9	gi|257053721|ref|YP_003131554.1|	-	0.58	10.8	3.1	1.7	9.2	0.3	3.0	2	1	0	2	2	2	0	Adenylosuccinate	lyase	C-terminus
HTH_11	PF08279.12	gi|257053722|ref|YP_003131555.1|	-	0.034	14.1	0.1	0.05	13.5	0.1	1.3	1	0	0	1	1	1	0	HTH	domain
Zn-ribbon_8	PF09723.10	gi|257053722|ref|YP_003131555.1|	-	0.037	14.1	4.2	0.077	13.1	4.0	1.6	1	1	0	1	1	1	0	Zinc	ribbon	domain
HypA	PF01155.19	gi|257053722|ref|YP_003131555.1|	-	0.05	13.6	0.7	0.077	13.0	0.7	1.4	1	1	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
HTH_40	PF14493.6	gi|257053722|ref|YP_003131555.1|	-	0.063	13.7	0.0	0.079	13.4	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|257053722|ref|YP_003131555.1|	-	0.097	12.6	0.0	0.15	12.0	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
PhnA_Zn_Ribbon	PF08274.12	gi|257053722|ref|YP_003131555.1|	-	0.16	12.0	4.7	1.2	9.2	1.2	2.2	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
zf-IS66	PF13005.7	gi|257053722|ref|YP_003131555.1|	-	0.94	9.9	5.1	8.9	6.8	0.1	3.1	3	0	0	3	3	3	0	zinc-finger	binding	domain	of	transposase	IS66
HNH	PF01844.23	gi|257053722|ref|YP_003131555.1|	-	0.96	9.7	5.8	6.9	6.9	0.7	2.7	1	1	2	3	3	3	0	HNH	endonuclease
zf-trcl	PF13451.6	gi|257053722|ref|YP_003131555.1|	-	1.8	8.6	7.3	0.35	10.8	1.0	2.1	1	1	1	2	2	2	0	Probable	zinc-ribbon	domain
PTH2	PF01981.16	gi|257053723|ref|YP_003131556.1|	-	2.5e-39	134.2	0.1	2.7e-39	134.1	0.1	1.0	1	0	0	1	1	1	1	Peptidyl-tRNA	hydrolase	PTH2
Proteasome	PF00227.26	gi|257053724|ref|YP_003131557.1|	-	2.9e-56	190.0	0.0	3.5e-56	189.7	0.0	1.1	1	0	0	1	1	1	1	Proteasome	subunit
Proteasome_A_N	PF10584.9	gi|257053724|ref|YP_003131557.1|	-	7.4e-14	51.1	0.1	1.5e-13	50.2	0.1	1.5	1	0	0	1	1	1	1	Proteasome	subunit	A	N-terminal	signature
Proteasome	PF00227.26	gi|257053725|ref|YP_003131558.1|	-	1.2e-44	152.0	0.4	1.5e-44	151.8	0.4	1.0	1	0	0	1	1	1	1	Proteasome	subunit
DUF2597	PF10772.9	gi|257053725|ref|YP_003131558.1|	-	0.071	13.2	0.4	0.12	12.4	0.4	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2597)
TruD	PF01142.18	gi|257053726|ref|YP_003131559.1|	-	1.2e-160	535.0	0.0	1.3e-160	534.8	0.0	1.0	1	0	0	1	1	1	1	tRNA	pseudouridine	synthase	D	(TruD)
Peptidase_C101	PF16218.5	gi|257053727|ref|YP_003131560.1|	-	0.075	12.3	0.0	0.1	11.8	0.0	1.2	1	0	0	1	1	1	0	Peptidase	family	C101
HTH_20	PF12840.7	gi|257053728|ref|YP_003131561.1|	-	1.9e-05	24.6	0.4	3.5e-05	23.8	0.0	1.6	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|257053728|ref|YP_003131561.1|	-	0.00049	19.9	0.0	0.002	18.0	0.0	2.0	3	0	0	3	3	3	1	Bacterial	regulatory	protein,	arsR	family
GntR	PF00392.21	gi|257053728|ref|YP_003131561.1|	-	0.0048	16.5	0.0	0.012	15.2	0.0	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
MarR_2	PF12802.7	gi|257053728|ref|YP_003131561.1|	-	0.0068	16.3	0.1	0.015	15.1	0.1	1.6	1	0	0	1	1	1	1	MarR	family
Replic_Relax	PF13814.6	gi|257053728|ref|YP_003131561.1|	-	0.0095	16.0	0.1	0.012	15.7	0.1	1.1	1	0	0	1	1	1	1	Replication-relaxation
PadR	PF03551.14	gi|257053728|ref|YP_003131561.1|	-	0.018	15.0	0.0	0.033	14.1	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
RP-C	PF03428.13	gi|257053728|ref|YP_003131561.1|	-	0.018	14.7	0.0	0.027	14.1	0.0	1.3	1	0	0	1	1	1	0	Replication	protein	C	N-terminal	domain
HTH_24	PF13412.6	gi|257053728|ref|YP_003131561.1|	-	0.032	13.8	0.0	0.07	12.7	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Staph_haemo	PF05480.11	gi|257053729|ref|YP_003131562.1|	-	0.17	11.7	0.1	0.31	10.9	0.1	1.4	1	0	0	1	1	1	0	Staphylococcus	haemolytic	protein
TrmB	PF01978.19	gi|257053730|ref|YP_003131563.1|	-	1.2e-08	34.7	0.0	3.9e-08	33.1	0.0	1.7	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|257053730|ref|YP_003131563.1|	-	5.8e-05	22.8	2.2	0.0001	22.0	0.0	2.4	3	0	0	3	3	3	1	IclR	helix-turn-helix	domain
Penicillinase_R	PF03965.16	gi|257053730|ref|YP_003131563.1|	-	0.098	13.0	0.0	0.16	12.3	0.0	1.3	1	0	0	1	1	1	0	Penicillinase	repressor
MFS_1	PF07690.16	gi|257053731|ref|YP_003131564.1|	-	1.1e-13	50.9	61.0	1.1e-09	37.7	38.5	2.5	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
DUF1424	PF07232.11	gi|257053731|ref|YP_003131564.1|	-	0.24	10.4	0.0	0.4	9.6	0.0	1.3	1	0	0	1	1	1	0	Putative	rep	protein	(DUF1424)
DUF2103	PF09876.9	gi|257053732|ref|YP_003131565.1|	-	2.3e-39	133.3	0.2	4.3e-39	132.5	0.2	1.4	1	0	0	1	1	1	1	Predicted	metal-binding	protein	(DUF2103)
acVLRF1	PF18859.1	gi|257053732|ref|YP_003131565.1|	-	0.0062	16.8	1.0	0.0062	16.8	1.0	2.4	3	1	0	3	3	3	1	Actinobacteria/chloroflexi	VLRF1	release	factor
Ribosomal_L37ae	PF01780.19	gi|257053733|ref|YP_003131566.1|	-	2.1e-30	104.6	0.7	2.3e-30	104.5	0.7	1.0	1	0	0	1	1	1	1	Ribosomal	L37ae	protein	family
Zn_Tnp_IS1595	PF12760.7	gi|257053733|ref|YP_003131566.1|	-	0.00075	19.4	1.1	0.0013	18.6	1.1	1.4	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|257053733|ref|YP_003131566.1|	-	0.0041	17.2	0.8	0.061	13.4	0.2	2.2	2	0	0	2	2	2	1	Zinc	ribbon	domain
zf-H2C2_2	PF13465.6	gi|257053733|ref|YP_003131566.1|	-	0.0061	16.9	0.6	2.3	8.8	0.1	2.2	2	0	0	2	2	2	2	Zinc-finger	double	domain
OrfB_Zn_ribbon	PF07282.11	gi|257053733|ref|YP_003131566.1|	-	0.014	15.3	0.9	0.022	14.7	0.9	1.3	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zf-C2H2	PF00096.26	gi|257053733|ref|YP_003131566.1|	-	0.047	14.2	3.0	1.8	9.2	0.3	2.3	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
Rubredoxin	PF00301.20	gi|257053733|ref|YP_003131566.1|	-	0.051	13.6	2.7	1.9	8.6	0.1	2.2	2	0	0	2	2	2	0	Rubredoxin
HalOD2	PF18547.1	gi|257053733|ref|YP_003131566.1|	-	0.094	12.6	6.0	1.6	8.7	6.0	2.2	1	1	0	1	1	1	0	Halobacterial	output	domain	2
zf-RING_7	PF02591.15	gi|257053733|ref|YP_003131566.1|	-	0.13	12.4	0.6	0.13	12.4	0.6	2.1	2	0	0	2	2	2	0	C4-type	zinc	ribbon	domain
zf-BED	PF02892.15	gi|257053733|ref|YP_003131566.1|	-	0.17	11.9	0.8	0.2	11.7	0.2	1.4	1	1	0	1	1	1	0	BED	zinc	finger
zf-CHCC	PF10276.9	gi|257053733|ref|YP_003131566.1|	-	0.2	11.8	4.0	0.91	9.6	1.0	2.3	2	0	0	2	2	2	0	Zinc-finger	domain
zf-C2H2_4	PF13894.6	gi|257053733|ref|YP_003131566.1|	-	0.48	11.4	2.8	17	6.5	0.4	2.3	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zinc_ribbon_2	PF13240.6	gi|257053733|ref|YP_003131566.1|	-	2.7	7.8	7.8	3.9	7.3	0.6	2.2	1	1	1	2	2	2	0	zinc-ribbon	domain
UPF0547	PF10571.9	gi|257053733|ref|YP_003131566.1|	-	5.8	7.1	10.0	12	6.1	1.2	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
DNA_RNApol_7kD	PF03604.13	gi|257053734|ref|YP_003131567.1|	-	1.7e-10	40.4	6.8	2e-10	40.1	6.8	1.1	1	0	0	1	1	1	1	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-ribbon_3	PF13248.6	gi|257053734|ref|YP_003131567.1|	-	4.1e-05	22.8	0.2	0.0044	16.4	0.0	2.1	2	0	0	2	2	2	1	zinc-ribbon	domain
HypA	PF01155.19	gi|257053734|ref|YP_003131567.1|	-	0.0007	19.6	0.4	0.0007	19.6	0.4	1.1	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
A2L_zn_ribbon	PF08792.10	gi|257053734|ref|YP_003131567.1|	-	0.00089	18.9	0.7	0.025	14.3	1.8	2.0	1	1	1	2	2	2	2	A2L	zinc	ribbon	domain
zf_UBZ	PF18439.1	gi|257053734|ref|YP_003131567.1|	-	0.0014	18.2	1.6	0.32	10.6	0.3	2.1	1	1	1	2	2	2	2	Ubiquitin-Binding	Zinc	Finger
Zn_Tnp_IS1595	PF12760.7	gi|257053734|ref|YP_003131567.1|	-	0.0031	17.4	4.4	0.077	13.0	0.1	2.1	2	0	0	2	2	2	1	Transposase	zinc-ribbon	domain
zf-CHCC	PF10276.9	gi|257053734|ref|YP_003131567.1|	-	0.0035	17.4	0.5	0.0061	16.6	0.5	1.4	1	0	0	1	1	1	1	Zinc-finger	domain
Lar_restr_allev	PF14354.6	gi|257053734|ref|YP_003131567.1|	-	0.0058	17.0	0.5	0.039	14.3	0.0	1.9	1	1	1	2	2	2	1	Restriction	alleviation	protein	Lar
YacG	PF03884.14	gi|257053734|ref|YP_003131567.1|	-	0.0065	16.2	0.2	0.33	10.7	0.0	2.0	2	0	0	2	2	2	1	DNA	gyrase	inhibitor	YacG
DZR	PF12773.7	gi|257053734|ref|YP_003131567.1|	-	0.009	16.0	0.9	0.017	15.2	0.9	1.5	1	1	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|257053734|ref|YP_003131567.1|	-	0.0093	15.7	2.3	0.17	11.6	0.3	2.1	2	0	0	2	2	2	1	zinc-ribbon	domain
Sgf11	PF08209.11	gi|257053734|ref|YP_003131567.1|	-	0.017	14.7	1.8	1	9.0	0.2	2.2	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
RNHCP	PF12647.7	gi|257053734|ref|YP_003131567.1|	-	0.017	15.1	0.2	0.019	14.9	0.2	1.1	1	0	0	1	1	1	0	RNHCP	domain
zinc-ribbons_6	PF07191.12	gi|257053734|ref|YP_003131567.1|	-	0.033	14.2	0.3	0.041	13.9	0.3	1.3	1	0	0	1	1	1	0	zinc-ribbons
Cys_rich_CPXG	PF14255.6	gi|257053734|ref|YP_003131567.1|	-	0.034	14.0	0.8	0.13	12.1	0.1	1.9	2	0	0	2	2	2	0	Cysteine-rich	CPXCG
Anti-TRAP	PF15777.5	gi|257053734|ref|YP_003131567.1|	-	0.035	14.1	0.1	0.039	13.9	0.1	1.2	1	0	0	1	1	1	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
Zn-ribbon_8	PF09723.10	gi|257053734|ref|YP_003131567.1|	-	0.041	14.0	3.9	0.083	13.0	3.8	1.5	1	1	0	1	1	1	0	Zinc	ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|257053734|ref|YP_003131567.1|	-	0.048	13.2	3.7	0.1	12.1	3.7	1.5	1	1	1	2	2	2	0	TFIIB	zinc-binding
DUF951	PF06107.11	gi|257053734|ref|YP_003131567.1|	-	0.064	13.2	0.4	2.9	7.9	0.1	2.1	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF951)
DUF3268	PF11672.8	gi|257053734|ref|YP_003131567.1|	-	0.09	13.1	1.2	0.39	11.1	0.1	1.9	1	1	1	2	2	2	0	zinc-finger-containing	domain
OrfB_Zn_ribbon	PF07282.11	gi|257053734|ref|YP_003131567.1|	-	0.21	11.5	2.8	0.31	11.0	2.8	1.5	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zinc_ribbon_4	PF13717.6	gi|257053734|ref|YP_003131567.1|	-	0.5	10.3	5.9	18	5.4	5.9	2.2	1	1	0	1	1	1	0	zinc-ribbon	domain
Pcc1	PF09341.10	gi|257053735|ref|YP_003131568.1|	-	6.6e-06	26.2	0.1	7.5e-06	26.0	0.1	1.0	1	0	0	1	1	1	1	Transcription	factor	Pcc1
DUF2218	PF09981.9	gi|257053735|ref|YP_003131568.1|	-	0.091	13.2	0.1	0.1	13.0	0.1	1.3	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2218)
Prefoldin_2	PF01920.20	gi|257053737|ref|YP_003131570.1|	-	7.4e-26	90.2	17.5	8.3e-26	90.0	17.5	1.0	1	0	0	1	1	1	1	Prefoldin	subunit
DUF3584	PF12128.8	gi|257053737|ref|YP_003131570.1|	-	0.0011	16.7	7.3	0.0014	16.3	7.3	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3584)
DUF5082	PF16888.5	gi|257053737|ref|YP_003131570.1|	-	0.0011	19.3	8.8	0.0014	18.9	8.8	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5082)
XhlA	PF10779.9	gi|257053737|ref|YP_003131570.1|	-	0.0013	18.9	9.8	0.0048	17.1	0.7	2.4	2	0	0	2	2	2	1	Haemolysin	XhlA
ApoLp-III	PF07464.11	gi|257053737|ref|YP_003131570.1|	-	0.021	14.9	1.2	0.021	14.9	1.2	2.1	1	1	1	2	2	2	0	Apolipophorin-III	precursor	(apoLp-III)
TraF_2	PF13729.6	gi|257053737|ref|YP_003131570.1|	-	0.029	13.7	0.3	0.029	13.7	0.3	2.0	1	1	1	2	2	2	0	F	plasmid	transfer	operon,	TraF,	protein
DHquinase_I	PF01487.15	gi|257053737|ref|YP_003131570.1|	-	0.041	14.1	2.0	0.041	14.1	2.0	1.6	2	0	0	2	2	1	0	Type	I	3-dehydroquinase
Prefoldin	PF02996.17	gi|257053737|ref|YP_003131570.1|	-	0.061	13.2	16.6	0.096	12.6	3.3	2.5	1	1	2	3	3	3	0	Prefoldin	subunit
CLZ	PF16526.5	gi|257053737|ref|YP_003131570.1|	-	0.065	13.6	2.1	0.065	13.6	2.1	2.3	2	0	0	2	2	2	0	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
Questin_oxidase	PF14027.6	gi|257053737|ref|YP_003131570.1|	-	0.083	12.4	1.8	0.1	12.1	1.8	1.1	1	0	0	1	1	1	0	Questin	oxidase-like
bZIP_1	PF00170.21	gi|257053737|ref|YP_003131570.1|	-	0.087	12.9	0.9	0.087	12.9	0.9	2.5	2	1	0	2	2	2	0	bZIP	transcription	factor
IFT57	PF10498.9	gi|257053737|ref|YP_003131570.1|	-	0.091	11.7	9.4	0.54	9.2	0.8	2.0	2	0	0	2	2	2	0	Intra-flagellar	transport	protein	57
DUF724	PF05266.14	gi|257053737|ref|YP_003131570.1|	-	0.093	12.6	9.8	0.11	12.3	9.8	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
DUF4988	PF16378.5	gi|257053737|ref|YP_003131570.1|	-	0.12	12.0	0.3	0.12	12.0	0.3	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function
Tropomyosin_1	PF12718.7	gi|257053737|ref|YP_003131570.1|	-	0.19	11.9	23.7	1	9.5	23.7	1.8	1	1	0	1	1	1	0	Tropomyosin	like
Exonuc_VII_L	PF02601.15	gi|257053737|ref|YP_003131570.1|	-	0.21	11.1	3.6	0.28	10.7	3.6	1.1	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
DHR10	PF18595.1	gi|257053737|ref|YP_003131570.1|	-	0.23	11.5	18.1	1.2	9.2	3.2	2.1	2	0	0	2	2	2	0	Designed	helical	repeat	protein	10	domain
Fanconi_C	PF02106.15	gi|257053737|ref|YP_003131570.1|	-	0.24	10.0	2.1	0.3	9.8	2.1	1.0	1	0	0	1	1	1	0	Fanconi	anaemia	group	C	protein
Laminin_II	PF06009.12	gi|257053737|ref|YP_003131570.1|	-	0.27	11.2	9.2	0.7	9.9	9.2	1.6	1	1	0	1	1	1	0	Laminin	Domain	II
Seryl_tRNA_N	PF02403.22	gi|257053737|ref|YP_003131570.1|	-	0.27	11.5	10.9	0.88	9.8	0.8	2.1	2	0	0	2	2	2	0	Seryl-tRNA	synthetase	N-terminal	domain
DUF4140	PF13600.6	gi|257053737|ref|YP_003131570.1|	-	0.47	10.9	13.1	0.4	11.1	0.8	2.1	2	0	0	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
Spc24	PF08286.11	gi|257053737|ref|YP_003131570.1|	-	0.52	10.6	17.0	0.57	10.4	2.7	2.1	1	1	1	2	2	2	0	Spc24	subunit	of	Ndc80
TPR_MLP1_2	PF07926.12	gi|257053737|ref|YP_003131570.1|	-	0.54	10.3	22.7	0.36	10.9	4.0	2.0	2	0	0	2	2	2	0	TPR/MLP1/MLP2-like	protein
DUF4446	PF14584.6	gi|257053737|ref|YP_003131570.1|	-	0.57	10.1	5.9	1.3	9.0	0.3	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4446)
Sigma70_ner	PF04546.13	gi|257053737|ref|YP_003131570.1|	-	1.1	9.1	16.0	0.22	11.4	3.0	2.1	1	1	1	2	2	2	0	Sigma-70,	non-essential	region
Sec34	PF04136.15	gi|257053737|ref|YP_003131570.1|	-	1.1	9.1	11.5	1	9.2	0.8	2.1	1	1	1	2	2	2	0	Sec34-like	family
Baculo_PEP_C	PF04513.12	gi|257053737|ref|YP_003131570.1|	-	1.1	9.3	9.2	5	7.2	9.2	1.8	1	1	0	1	1	1	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DUF16	PF01519.16	gi|257053737|ref|YP_003131570.1|	-	1.2	9.7	12.2	3.3	8.2	12.2	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	DUF16
DUF4164	PF13747.6	gi|257053737|ref|YP_003131570.1|	-	1.3	9.3	12.2	0.43	10.9	1.5	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4164)
HemX	PF04375.14	gi|257053737|ref|YP_003131570.1|	-	1.4	8.1	18.0	17	4.6	18.0	1.9	1	1	0	1	1	1	0	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
DUF1664	PF07889.12	gi|257053737|ref|YP_003131570.1|	-	1.4	8.9	9.2	0.6	10.2	0.8	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1664)
Cnn_1N	PF07989.11	gi|257053737|ref|YP_003131570.1|	-	1.5	9.1	13.1	4.3	7.6	1.7	2.2	2	0	0	2	2	2	0	Centrosomin	N-terminal	motif	1
FlaC_arch	PF05377.11	gi|257053737|ref|YP_003131570.1|	-	1.5	9.3	11.9	0.088	13.2	3.8	2.4	2	1	0	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
Prominin	PF05478.11	gi|257053737|ref|YP_003131570.1|	-	1.5	6.7	4.9	1.8	6.4	4.9	1.1	1	0	0	1	1	1	0	Prominin
DASH_Dad2	PF08654.10	gi|257053737|ref|YP_003131570.1|	-	1.5	9.3	11.3	3.3	8.2	5.1	2.4	2	1	1	3	3	3	0	DASH	complex	subunit	Dad2
Herpes_UL14	PF03580.14	gi|257053737|ref|YP_003131570.1|	-	1.6	9.0	10.7	3.2	8.0	1.8	2.1	2	0	0	2	2	2	0	Herpesvirus	UL14-like	protein
FUSC	PF04632.12	gi|257053737|ref|YP_003131570.1|	-	1.6	7.1	3.2	2.5	6.5	3.2	1.3	1	1	0	1	1	1	0	Fusaric	acid	resistance	protein	family
DUF4407	PF14362.6	gi|257053737|ref|YP_003131570.1|	-	1.8	7.9	10.7	3.5	6.9	10.7	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
ParE_toxin	PF05016.15	gi|257053737|ref|YP_003131570.1|	-	1.8	9.2	4.4	18	6.0	1.6	2.2	1	1	1	2	2	2	0	ParE	toxin	of	type	II	toxin-antitoxin	system,	parDE
DUF3450	PF11932.8	gi|257053737|ref|YP_003131570.1|	-	1.9	7.7	20.4	43	3.3	20.4	2.0	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3450)
Fib_alpha	PF08702.10	gi|257053737|ref|YP_003131570.1|	-	2	8.6	9.7	4.3	7.5	0.6	2.0	1	1	1	2	2	2	0	Fibrinogen	alpha/beta	chain	family
Laminin_I	PF06008.14	gi|257053737|ref|YP_003131570.1|	-	2.1	8.0	16.3	1.5	8.4	1.8	2.1	1	1	0	2	2	2	0	Laminin	Domain	I
NPV_P10	PF05531.12	gi|257053737|ref|YP_003131570.1|	-	2.1	8.8	9.4	3.1	8.3	0.3	2.2	2	0	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
WXG100	PF06013.12	gi|257053737|ref|YP_003131570.1|	-	2.1	8.6	12.4	18	5.7	7.0	2.6	2	1	0	2	2	2	0	Proteins	of	100	residues	with	WXG
DUF948	PF06103.11	gi|257053737|ref|YP_003131570.1|	-	2.3	8.6	7.8	3.9e+02	1.4	7.8	2.3	1	1	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF948)
KfrA_N	PF11740.8	gi|257053737|ref|YP_003131570.1|	-	2.3	8.9	18.2	3.4	8.4	1.5	2.2	2	0	0	2	2	2	0	Plasmid	replication	region	DNA-binding	N-term
DUF4200	PF13863.6	gi|257053737|ref|YP_003131570.1|	-	2.7	8.4	16.6	2.7	8.4	4.4	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4200)
EzrA	PF06160.12	gi|257053737|ref|YP_003131570.1|	-	3.1	5.9	16.1	7.3	4.6	16.1	1.5	1	1	0	1	1	1	0	Septation	ring	formation	regulator,	EzrA
Tektin	PF03148.14	gi|257053737|ref|YP_003131570.1|	-	3.6	6.2	15.7	0.97	8.1	3.1	2.0	2	0	0	2	2	2	0	Tektin	family
Snapin_Pallidin	PF14712.6	gi|257053737|ref|YP_003131570.1|	-	3.8	8.0	13.1	5.1	7.6	1.5	2.2	2	0	0	2	2	2	0	Snapin/Pallidin
GCN5L1	PF06320.13	gi|257053737|ref|YP_003131570.1|	-	4.2	7.5	11.2	5.7	7.1	0.8	2.1	1	1	1	2	2	2	0	GCN5-like	protein	1	(GCN5L1)
DivIC	PF04977.15	gi|257053737|ref|YP_003131570.1|	-	5.3	6.9	15.6	1.2	9.0	2.0	2.2	2	0	0	2	2	2	0	Septum	formation	initiator
IL2	PF00715.17	gi|257053737|ref|YP_003131570.1|	-	5.3	7.0	6.3	18	5.2	6.3	1.7	1	1	0	1	1	1	0	Interleukin	2
COG2	PF06148.11	gi|257053737|ref|YP_003131570.1|	-	5.3	7.1	11.5	2.9	8.0	2.0	2.1	1	1	1	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
SlyX	PF04102.12	gi|257053737|ref|YP_003131570.1|	-	5.4	7.7	14.8	1.6	9.4	0.7	2.3	2	0	0	2	2	2	0	SlyX
Syntaxin-6_N	PF09177.11	gi|257053737|ref|YP_003131570.1|	-	5.7	7.6	11.1	97	3.6	11.2	2.2	1	1	0	1	1	1	0	Syntaxin	6,	N-terminal
ADIP	PF11559.8	gi|257053737|ref|YP_003131570.1|	-	5.8	7.0	14.8	1.9	8.6	1.4	2.0	2	0	0	2	2	2	0	Afadin-	and	alpha	-actinin-Binding
DUF4795	PF16043.5	gi|257053737|ref|YP_003131570.1|	-	6.1	6.4	16.3	52	3.3	16.3	1.9	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4795)
BST2	PF16716.5	gi|257053737|ref|YP_003131570.1|	-	6.2	7.5	15.5	1	10.0	1.7	2.3	2	0	0	2	2	2	0	Bone	marrow	stromal	antigen	2
PCRF	PF03462.18	gi|257053737|ref|YP_003131570.1|	-	7.2	6.4	14.1	18	5.1	14.1	1.7	1	1	0	1	1	1	0	PCRF	domain
Nup54	PF13874.6	gi|257053737|ref|YP_003131570.1|	-	7.5	6.7	11.7	1e+02	3.0	11.7	2.2	1	1	0	1	1	1	0	Nucleoporin	complex	subunit	54
AAA_23	PF13476.6	gi|257053737|ref|YP_003131570.1|	-	7.5	7.0	16.5	6.5	7.2	6.2	2.0	2	0	0	2	2	2	0	AAA	domain
BLOC1_2	PF10046.9	gi|257053737|ref|YP_003131570.1|	-	8.2	6.8	13.8	2.1	8.7	1.2	2.2	1	1	1	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Fzo_mitofusin	PF04799.13	gi|257053737|ref|YP_003131570.1|	-	8.7	5.9	10.7	3	7.4	1.1	2.1	1	1	1	2	2	2	0	fzo-like	conserved	region
GAS	PF13851.6	gi|257053737|ref|YP_003131570.1|	-	9.4	5.5	19.3	38	3.6	19.3	1.7	1	1	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
DUF3194	PF11419.8	gi|257053738|ref|YP_003131571.1|	-	5.6e-05	23.4	1.3	7.7e-05	23.0	1.3	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3194)
GTP_EFTU	PF00009.27	gi|257053740|ref|YP_003131573.1|	-	4.1e-32	111.3	0.0	1.9e-30	105.8	0.0	2.3	1	1	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
GTP_EFTU_D4	PF14578.6	gi|257053740|ref|YP_003131573.1|	-	8.1e-25	86.6	0.1	2.3e-24	85.1	0.1	1.8	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	4
IF-2	PF11987.8	gi|257053740|ref|YP_003131573.1|	-	3.4e-21	75.3	0.4	9.1e-21	74.0	0.4	1.7	1	0	0	1	1	1	1	Translation-initiation	factor	2
GTP_EFTU_D2	PF03144.25	gi|257053740|ref|YP_003131573.1|	-	1.6e-13	50.9	8.1	1.6e-09	38.0	0.6	3.2	2	1	0	2	2	2	2	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.23	gi|257053740|ref|YP_003131573.1|	-	1.9e-08	34.4	0.0	5e-08	33.0	0.0	1.8	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
Dynamin_N	PF00350.23	gi|257053740|ref|YP_003131573.1|	-	0.0053	16.8	0.2	0.49	10.4	0.0	2.5	2	0	0	2	2	2	1	Dynamin	family
ATP_bind_1	PF03029.17	gi|257053740|ref|YP_003131573.1|	-	0.077	12.8	0.0	0.29	10.9	0.0	2.0	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
T4_Rnl2_C	PF18043.1	gi|257053740|ref|YP_003131573.1|	-	0.28	11.4	1.2	0.81	9.9	0.3	2.2	2	0	0	2	2	2	0	T4	RNA	ligase	2	C-terminal
OrfB_IS605	PF01385.19	gi|257053741|ref|YP_003131574.1|	-	7.6e-22	77.8	0.1	1.6e-21	76.7	0.1	1.5	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|257053741|ref|YP_003131574.1|	-	2.7e-19	68.9	0.1	5.6e-19	67.8	0.1	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
HTH_OrfB_IS605	PF12323.8	gi|257053741|ref|YP_003131574.1|	-	0.00014	21.3	0.1	0.0003	20.2	0.1	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
DUF3445	PF11927.8	gi|257053741|ref|YP_003131574.1|	-	0.0029	17.3	0.1	0.0051	16.5	0.1	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3445)
Rubredoxin_2	PF18073.1	gi|257053741|ref|YP_003131574.1|	-	0.26	11.0	1.8	0.83	9.4	1.9	1.8	1	1	0	1	1	1	0	Rubredoxin	metal	binding	domain
PRC	PF05239.16	gi|257053742|ref|YP_003131575.1|	-	2e-10	40.6	0.1	2.3e-10	40.4	0.1	1.1	1	0	0	1	1	1	1	PRC-barrel	domain
PIN_6	PF17146.4	gi|257053743|ref|YP_003131576.1|	-	9.5e-15	54.9	0.1	1.8e-14	54.0	0.1	1.4	1	0	0	1	1	1	1	PIN	domain	of	ribonuclease
Zn-ribbon_8	PF09723.10	gi|257053743|ref|YP_003131576.1|	-	0.0003	20.8	1.9	0.00081	19.5	1.9	1.7	1	0	0	1	1	1	1	Zinc	ribbon	domain
HypA	PF01155.19	gi|257053743|ref|YP_003131576.1|	-	0.00054	20.0	0.6	0.0008	19.4	0.6	1.4	1	1	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc-ribbons_6	PF07191.12	gi|257053743|ref|YP_003131576.1|	-	0.0013	18.7	0.4	0.0019	18.2	0.4	1.3	1	0	0	1	1	1	1	zinc-ribbons
PIN_5	PF08745.11	gi|257053743|ref|YP_003131576.1|	-	0.0013	18.2	1.0	0.0023	17.4	0.7	1.5	1	1	1	2	2	2	1	PINc	domain	ribonuclease
zf-C3HC4_3	PF13920.6	gi|257053743|ref|YP_003131576.1|	-	0.0019	18.0	1.0	0.0028	17.5	1.0	1.2	1	0	0	1	1	1	1	Zinc	finger,	C3HC4	type	(RING	finger)
Rad50_zn_hook	PF04423.14	gi|257053743|ref|YP_003131576.1|	-	0.0056	16.5	3.6	0.04	13.8	1.4	3.0	3	1	1	4	4	3	1	Rad50	zinc	hook	motif
DZR	PF12773.7	gi|257053743|ref|YP_003131576.1|	-	0.0065	16.5	0.5	0.0099	15.9	0.5	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
Prok-RING_4	PF14447.6	gi|257053743|ref|YP_003131576.1|	-	0.0074	16.1	0.9	0.048	13.5	2.3	1.6	2	0	0	2	2	2	1	Prokaryotic	RING	finger	family	4
DNA_ligase_ZBD	PF03119.16	gi|257053743|ref|YP_003131576.1|	-	0.0078	16.2	3.1	0.04	14.0	0.5	2.4	2	0	0	2	2	2	1	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
Prok-RING_1	PF14446.6	gi|257053743|ref|YP_003131576.1|	-	0.008	16.1	1.2	0.013	15.4	1.2	1.3	1	0	0	1	1	1	1	Prokaryotic	RING	finger	family	1
zf-P11	PF03854.14	gi|257053743|ref|YP_003131576.1|	-	0.0083	15.8	0.0	0.014	15.1	0.0	1.2	1	0	0	1	1	1	1	P-11	zinc	finger
DUF4411	PF14367.6	gi|257053743|ref|YP_003131576.1|	-	0.011	15.6	0.1	0.04	13.8	0.1	1.9	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4411)
zinc_ribbon_15	PF17032.5	gi|257053743|ref|YP_003131576.1|	-	0.015	16.0	0.2	0.021	15.5	0.2	1.3	1	0	0	1	1	1	0	zinc-ribbon	family
zf-C3HC4_2	PF13923.6	gi|257053743|ref|YP_003131576.1|	-	0.018	14.8	2.1	0.028	14.3	2.1	1.3	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
zf-NADH-PPase	PF09297.11	gi|257053743|ref|YP_003131576.1|	-	0.023	14.3	2.6	3.2	7.5	0.5	2.5	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
Ribosomal_L37e	PF01907.19	gi|257053743|ref|YP_003131576.1|	-	0.038	14.2	0.4	0.06	13.5	0.4	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L37e
C1_2	PF03107.16	gi|257053743|ref|YP_003131576.1|	-	0.038	14.3	0.3	0.067	13.5	0.3	1.4	1	0	0	1	1	1	0	C1	domain
zf-RING_5	PF14634.6	gi|257053743|ref|YP_003131576.1|	-	0.075	13.0	1.9	0.11	12.5	1.9	1.2	1	0	0	1	1	1	0	zinc-RING	finger	domain
zf-ribbon_3	PF13248.6	gi|257053743|ref|YP_003131576.1|	-	0.099	12.1	0.4	0.099	12.1	0.4	1.6	2	0	0	2	2	1	0	zinc-ribbon	domain
NOB1_Zn_bind	PF08772.11	gi|257053743|ref|YP_003131576.1|	-	0.11	12.7	0.4	0.2	11.9	0.2	1.5	2	0	0	2	2	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
Phage_portal_2	PF05136.13	gi|257053743|ref|YP_003131576.1|	-	0.14	11.3	0.0	0.17	11.0	0.0	1.1	1	0	0	1	1	1	0	Phage	portal	protein,	lambda	family
zf-C2H2_4	PF13894.6	gi|257053743|ref|YP_003131576.1|	-	0.18	12.7	2.1	11	7.1	0.2	2.3	1	1	1	2	2	2	0	C2H2-type	zinc	finger
Nudix_N_2	PF14803.6	gi|257053743|ref|YP_003131576.1|	-	0.19	11.7	4.6	3.9	7.5	0.3	3.1	3	0	0	3	3	3	0	Nudix	N-terminal
zf-C2H2	PF00096.26	gi|257053743|ref|YP_003131576.1|	-	0.2	12.2	3.0	3.2	8.4	0.3	2.3	1	1	1	2	2	2	0	Zinc	finger,	C2H2	type
zinc_ribbon_2	PF13240.6	gi|257053743|ref|YP_003131576.1|	-	0.26	11.1	3.7	0.51	10.1	3.7	1.5	1	0	0	1	1	1	0	zinc-ribbon	domain
YHS	PF04945.13	gi|257053743|ref|YP_003131576.1|	-	0.26	11.4	1.1	0.83	9.8	0.8	1.9	1	1	1	2	2	2	0	YHS	domain
zf-C2HC_2	PF13913.6	gi|257053743|ref|YP_003131576.1|	-	0.85	9.6	7.9	0.32	10.9	0.7	2.3	2	0	0	2	2	2	0	zinc-finger	of	a	C2HC-type
RHH_1	PF01402.21	gi|257053744|ref|YP_003131577.1|	-	0.00092	19.1	0.7	0.0013	18.6	0.7	1.3	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
IF2_N	PF04760.15	gi|257053744|ref|YP_003131577.1|	-	0.054	13.3	0.1	0.11	12.3	0.0	1.5	1	1	1	2	2	2	0	Translation	initiation	factor	IF-2,	N-terminal	region
PGBA_C	PF15437.6	gi|257053744|ref|YP_003131577.1|	-	0.08	13.3	0.1	0.11	12.9	0.1	1.2	1	0	0	1	1	1	0	Plasminogen-binding	protein	pgbA	C-terminal
CT_C_D	PF02682.16	gi|257053744|ref|YP_003131577.1|	-	0.16	11.6	0.0	0.21	11.3	0.0	1.1	1	0	0	1	1	1	0	Carboxyltransferase	domain,	subdomain	C	and	D
CPBP	PF02517.16	gi|257053745|ref|YP_003131578.1|	-	5.9e-13	49.0	12.1	2.3e-12	47.1	12.1	2.2	1	1	0	1	1	1	1	CPBP	intramembrane	metalloprotease
Yip1	PF04893.17	gi|257053746|ref|YP_003131579.1|	-	0.0031	17.3	10.1	0.0043	16.8	10.1	1.3	1	0	0	1	1	1	1	Yip1	domain
DUF4199	PF13858.6	gi|257053746|ref|YP_003131579.1|	-	0.095	13.1	1.5	0.16	12.4	1.5	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4199)
DUF2157	PF09925.9	gi|257053746|ref|YP_003131579.1|	-	0.23	11.2	3.4	0.9	9.3	3.4	1.9	1	1	0	1	1	1	0	Predicted	membrane	protein	(DUF2157)
IMPDH	PF00478.25	gi|257053748|ref|YP_003131581.1|	-	7.2e-110	367.2	2.5	8.9e-110	366.9	2.5	1.1	1	0	0	1	1	1	1	IMP	dehydrogenase	/	GMP	reductase	domain
FMN_dh	PF01070.18	gi|257053748|ref|YP_003131581.1|	-	6.5e-10	38.6	9.9	1.5e-09	37.4	8.8	1.8	1	1	0	1	1	1	1	FMN-dependent	dehydrogenase
NMO	PF03060.15	gi|257053748|ref|YP_003131581.1|	-	8.3e-10	38.6	9.2	1.9e-07	30.8	9.2	2.2	1	1	0	1	1	1	1	Nitronate	monooxygenase
His_biosynth	PF00977.21	gi|257053748|ref|YP_003131581.1|	-	1.1e-05	25.0	1.6	0.0026	17.3	0.1	3.0	2	1	1	3	3	3	2	Histidine	biosynthesis	protein
DHO_dh	PF01180.21	gi|257053748|ref|YP_003131581.1|	-	0.00016	21.0	1.0	0.00024	20.4	0.3	1.6	2	0	0	2	2	2	1	Dihydroorotate	dehydrogenase
Dus	PF01207.17	gi|257053748|ref|YP_003131581.1|	-	0.00082	18.6	1.2	0.00093	18.4	0.1	1.6	2	0	0	2	2	2	1	Dihydrouridine	synthase	(Dus)
ThiG	PF05690.14	gi|257053748|ref|YP_003131581.1|	-	0.0015	17.9	1.3	0.0015	17.9	1.3	2.3	2	0	0	2	2	2	1	Thiazole	biosynthesis	protein	ThiG
Glu_synthase	PF01645.17	gi|257053748|ref|YP_003131581.1|	-	0.0042	16.3	2.0	0.0086	15.3	1.8	1.5	1	1	0	1	1	1	1	Conserved	region	in	glutamate	synthase
G3P_antiterm	PF04309.12	gi|257053748|ref|YP_003131581.1|	-	0.0065	15.9	0.3	0.6	9.5	0.0	2.8	3	1	0	3	3	3	1	Glycerol-3-phosphate	responsive	antiterminator
NanE	PF04131.14	gi|257053748|ref|YP_003131581.1|	-	0.071	12.3	1.5	1	8.5	1.0	2.6	1	1	1	2	2	2	0	Putative	N-acetylmannosamine-6-phosphate	epimerase
TMP-TENI	PF02581.17	gi|257053748|ref|YP_003131581.1|	-	0.092	12.1	5.1	0.25	10.7	4.7	1.9	1	1	1	2	2	2	0	Thiamine	monophosphate	synthase
AIRS	PF00586.24	gi|257053748|ref|YP_003131581.1|	-	0.2	12.3	2.4	0.45	11.2	1.2	2.2	2	1	0	2	2	2	0	AIR	synthase	related	protein,	N-terminal	domain
SecD_SecF	PF02355.16	gi|257053749|ref|YP_003131582.1|	-	5.1e-24	84.7	14.5	5.1e-24	84.7	14.5	1.5	2	0	0	2	2	2	1	Protein	export	membrane	protein
Sec_GG	PF07549.14	gi|257053749|ref|YP_003131582.1|	-	7.3e-07	28.5	0.1	2.4e-06	26.8	0.1	2.0	1	0	0	1	1	1	1	SecD/SecF	GG	Motif
Patched	PF02460.18	gi|257053749|ref|YP_003131582.1|	-	0.85	7.6	14.6	1.3	7.0	14.6	1.2	1	0	0	1	1	1	0	Patched	family
ACR_tran	PF00873.19	gi|257053749|ref|YP_003131582.1|	-	1.9	6.1	18.5	0.3	8.7	12.0	2.0	1	1	1	2	2	2	0	AcrB/AcrD/AcrF	family
SecD_SecF	PF02355.16	gi|257053750|ref|YP_003131583.1|	-	9.2e-18	64.3	4.5	1.8e-17	63.4	4.5	1.4	1	0	0	1	1	1	1	Protein	export	membrane	protein
MMPL	PF03176.15	gi|257053750|ref|YP_003131583.1|	-	0.00042	19.4	14.6	0.00083	18.4	14.6	1.4	1	0	0	1	1	1	1	MMPL	family
DUF2197	PF09963.9	gi|257053751|ref|YP_003131584.1|	-	0.028	14.7	0.6	3	8.2	0.1	2.1	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2197)
zinc-ribbons_6	PF07191.12	gi|257053751|ref|YP_003131584.1|	-	0.045	13.7	2.7	0.27	11.3	2.7	1.9	1	1	0	1	1	1	0	zinc-ribbons
zf-FPG_IleRS	PF06827.14	gi|257053751|ref|YP_003131584.1|	-	0.074	12.9	4.3	4.4	7.3	0.4	2.4	2	0	0	2	2	2	0	Zinc	finger	found	in	FPG	and	IleRS
HypA	PF01155.19	gi|257053751|ref|YP_003131584.1|	-	0.093	12.8	0.6	0.11	12.5	0.6	1.1	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn_Tnp_IS1595	PF12760.7	gi|257053751|ref|YP_003131584.1|	-	0.12	12.4	0.8	0.12	12.4	0.8	2.1	1	1	0	2	2	2	0	Transposase	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|257053751|ref|YP_003131584.1|	-	0.14	12.3	5.3	1.6	8.9	5.1	2.0	1	1	1	2	2	2	0	Zinc	ribbon	domain
zf_UBZ	PF18439.1	gi|257053751|ref|YP_003131584.1|	-	0.17	11.5	3.9	3.4	7.3	0.9	2.1	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
Orn_Arg_deC_N	PF02784.16	gi|257053752|ref|YP_003131585.1|	-	2.2e-41	141.9	0.0	2.7e-41	141.6	0.0	1.1	1	0	0	1	1	1	1	Pyridoxal-dependent	decarboxylase,	pyridoxal	binding	domain
Orn_DAP_Arg_deC	PF00278.22	gi|257053752|ref|YP_003131585.1|	-	1.2e-19	70.4	0.0	1.2e-19	70.4	0.0	1.3	1	1	0	1	1	1	1	Pyridoxal-dependent	decarboxylase,	C-terminal	sheet	domain
Peptidase_M20	PF01546.28	gi|257053753|ref|YP_003131586.1|	-	1.1e-25	90.6	0.6	1.8e-25	89.8	0.3	1.5	2	0	0	2	2	2	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|257053753|ref|YP_003131586.1|	-	1.3e-18	66.9	0.0	2.8e-18	65.8	0.0	1.6	2	0	0	2	2	2	1	Peptidase	dimerisation	domain
Glyco_transf_21	PF13506.6	gi|257053754|ref|YP_003131587.1|	-	9.1e-09	35.0	0.0	1.7e-08	34.2	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Glycos_transf_2	PF00535.26	gi|257053754|ref|YP_003131587.1|	-	8.5e-08	32.2	0.2	1.8e-07	31.1	0.2	1.5	1	1	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|257053754|ref|YP_003131587.1|	-	0.0069	16.3	0.0	0.0086	16.0	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
PQQ_3	PF13570.6	gi|257053755|ref|YP_003131588.1|	-	1.8e-64	212.8	60.0	1.1e-10	41.7	1.6	8.4	8	0	0	8	8	8	8	PQQ-like	domain
PQQ_2	PF13360.6	gi|257053755|ref|YP_003131588.1|	-	1e-56	192.2	42.9	9.5e-23	81.0	8.6	4.1	1	1	3	4	4	4	4	PQQ-like	domain
PQQ	PF01011.21	gi|257053755|ref|YP_003131588.1|	-	4.8e-45	149.4	34.4	4.6e-08	32.6	0.2	9.9	11	0	0	11	11	11	7	PQQ	enzyme	repeat
PsbP	PF01789.16	gi|257053755|ref|YP_003131588.1|	-	0.0047	17.1	0.4	45	4.1	0.0	5.4	3	2	2	7	7	7	0	PsbP
Ricin_B_lectin	PF00652.22	gi|257053755|ref|YP_003131588.1|	-	0.013	15.7	0.0	1.8	8.8	0.0	3.2	1	1	3	4	4	4	0	Ricin-type	beta-trefoil	lectin	domain
SUKH-4	PF14435.6	gi|257053755|ref|YP_003131588.1|	-	0.22	11.5	9.3	19	5.3	0.2	4.5	1	1	3	5	5	5	0	SUKH-4	immunity	protein
TAT_signal	PF10518.9	gi|257053755|ref|YP_003131588.1|	-	9.9	6.2	8.8	0.6	10.0	1.4	2.7	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
tRNA-synt_2b	PF00587.25	gi|257053756|ref|YP_003131589.1|	-	3.4e-20	72.8	0.0	5.8e-20	72.0	0.0	1.3	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
HGTP_anticodon	PF03129.20	gi|257053756|ref|YP_003131589.1|	-	9.3e-20	70.6	0.2	2.2e-19	69.4	0.2	1.7	1	0	0	1	1	1	1	Anticodon	binding	domain
ProRS-C_1	PF09180.11	gi|257053756|ref|YP_003131589.1|	-	2.5e-17	62.8	1.2	7e-17	61.4	1.2	1.8	1	0	0	1	1	1	1	Prolyl-tRNA	synthetase,	C-terminal
VATC	PF18716.1	gi|257053756|ref|YP_003131589.1|	-	0.82	9.6	2.6	1.2	9.0	0.0	2.3	2	0	0	2	2	2	0	Vms1-associating	treble	clef	domain
AstE_AspA	PF04952.14	gi|257053757|ref|YP_003131590.1|	-	4.1e-15	55.6	0.1	5.3e-15	55.3	0.1	1.1	1	0	0	1	1	1	1	Succinylglutamate	desuccinylase	/	Aspartoacylase	family
Peptidase_M99	PF17033.5	gi|257053757|ref|YP_003131590.1|	-	0.0025	17.3	0.0	0.0034	16.8	0.0	1.1	1	0	0	1	1	1	1	Carboxypeptidase	controlling	helical	cell	shape	catalytic
KH_7	PF17214.3	gi|257053759|ref|YP_003131592.1|	-	2.1e-31	107.6	0.8	1.4e-28	98.6	0.2	2.8	2	0	0	2	2	2	2	KH	domain
Beta-Casp	PF10996.8	gi|257053759|ref|YP_003131592.1|	-	8e-22	77.6	0.0	1.5e-21	76.7	0.0	1.5	1	0	0	1	1	1	1	Beta-Casp	domain
RMMBL	PF07521.12	gi|257053759|ref|YP_003131592.1|	-	5.2e-16	58.3	0.0	1.1e-15	57.3	0.0	1.6	1	0	0	1	1	1	1	Zn-dependent	metallo-hydrolase	RNA	specificity	domain
Lactamase_B	PF00753.27	gi|257053759|ref|YP_003131592.1|	-	2.1e-12	47.5	2.7	1.1e-11	45.2	2.7	2.1	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_6	PF16661.5	gi|257053759|ref|YP_003131592.1|	-	2.6e-10	40.1	0.0	4.2e-10	39.4	0.0	1.3	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily	domain
Lactamase_B_2	PF12706.7	gi|257053759|ref|YP_003131592.1|	-	4e-09	36.3	0.1	7.6e-09	35.4	0.1	1.4	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
KH_2	PF07650.17	gi|257053759|ref|YP_003131592.1|	-	4.4e-07	29.6	0.0	3.3e-06	26.8	0.0	2.2	2	0	0	2	2	2	1	KH	domain
Lactamase_B_3	PF13483.6	gi|257053759|ref|YP_003131592.1|	-	0.00036	20.5	0.2	0.00079	19.4	0.0	1.6	2	0	0	2	2	2	1	Beta-lactamase	superfamily	domain
KH_4	PF13083.6	gi|257053759|ref|YP_003131592.1|	-	0.0049	16.7	0.0	0.012	15.4	0.0	1.6	1	0	0	1	1	1	1	KH	domain
KH_1	PF00013.29	gi|257053759|ref|YP_003131592.1|	-	0.022	14.6	0.1	0.065	13.1	0.0	1.8	2	0	0	2	2	2	0	KH	domain
Glyco_hydro_43	PF04616.14	gi|257053760|ref|YP_003131593.1|	-	3.8e-79	266.0	0.2	4.9e-79	265.6	0.2	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	43
GH43_C2	PF17851.1	gi|257053760|ref|YP_003131593.1|	-	3.4e-34	118.4	0.0	1.8e-33	116.0	0.0	1.9	2	0	0	2	2	2	1	Beta	xylosidase	C-terminal	Concanavalin	A-like	domain
Laminin_G_3	PF13385.6	gi|257053760|ref|YP_003131593.1|	-	0.045	13.9	0.2	0.13	12.5	0.0	1.8	2	0	0	2	2	2	0	Concanavalin	A-like	lectin/glucanases	superfamily
Big_6	PF17936.1	gi|257053760|ref|YP_003131593.1|	-	0.046	14.0	0.1	0.2	11.9	0.0	2.1	2	0	0	2	2	2	0	Bacterial	Ig	domain
Glyco_hyd_65N_2	PF14498.6	gi|257053761|ref|YP_003131594.1|	-	2.3e-66	224.0	0.0	4.2e-66	223.2	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	65,	N-terminal	domain
Glyco_hydro_65N	PF03636.15	gi|257053761|ref|YP_003131594.1|	-	0.097	12.3	0.0	0.27	10.8	0.0	1.7	2	0	0	2	2	2	0	Glycosyl	hydrolase	family	65,	N-terminal	domain
Aldo_ket_red	PF00248.21	gi|257053762|ref|YP_003131595.1|	-	9.8e-73	244.9	0.0	1.1e-72	244.7	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
HhH-GPD	PF00730.25	gi|257053763|ref|YP_003131596.1|	-	3.1e-20	72.6	0.0	4.6e-20	72.1	0.0	1.3	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH_5	PF14520.6	gi|257053763|ref|YP_003131596.1|	-	0.00069	20.2	0.6	0.061	13.9	0.0	2.6	1	1	1	2	2	2	1	Helix-hairpin-helix	domain
HHH	PF00633.23	gi|257053763|ref|YP_003131596.1|	-	0.0008	19.2	0.0	0.0021	17.9	0.0	1.8	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
EndIII_4Fe-2S	PF10576.9	gi|257053763|ref|YP_003131596.1|	-	0.002	18.4	5.5	0.0041	17.4	5.5	1.6	1	0	0	1	1	1	1	Iron-sulfur	binding	domain	of	endonuclease	III
TetR_C_36	PF18598.1	gi|257053763|ref|YP_003131596.1|	-	0.055	13.4	0.0	0.14	12.1	0.0	1.7	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
DUF371	PF04027.13	gi|257053764|ref|YP_003131597.1|	-	9.5e-55	184.2	0.6	1.1e-54	184.0	0.6	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF371)
DUF373	PF04123.13	gi|257053765|ref|YP_003131598.1|	-	5.1e-99	331.9	8.1	5.9e-99	331.7	8.1	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF373)
LANC_like	PF05147.13	gi|257053765|ref|YP_003131598.1|	-	0.051	12.1	0.0	0.068	11.7	0.0	1.1	1	0	0	1	1	1	0	Lanthionine	synthetase	C-like	protein
T3SSipB	PF16535.5	gi|257053766|ref|YP_003131599.1|	-	0.00091	19.7	8.0	0.00091	19.7	8.0	3.2	1	1	2	3	3	3	1	Type	III	cell	invasion	protein	SipB
Laminin_II	PF06009.12	gi|257053766|ref|YP_003131599.1|	-	0.14	12.2	34.2	0.13	12.3	14.2	3.2	1	1	3	4	4	4	0	Laminin	Domain	II
TOM20_plant	PF06552.12	gi|257053766|ref|YP_003131599.1|	-	4.7	6.9	14.9	0.18	11.6	8.1	2.0	2	1	1	3	3	3	0	Plant	specific	mitochondrial	import	receptor	subunit	TOM20
Glyco_hydro_2	PF00703.21	gi|257053768|ref|YP_003131601.1|	-	2.5e-08	34.6	0.0	5.3e-08	33.5	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	2
Glyco_hydro_2_N	PF02837.18	gi|257053768|ref|YP_003131601.1|	-	0.0059	16.5	0.0	0.011	15.6	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	2,	sugar	binding	domain
BetaGal_dom4_5	PF13364.6	gi|257053768|ref|YP_003131601.1|	-	0.0067	17.0	0.0	0.014	15.9	0.0	1.5	1	0	0	1	1	1	1	Beta-galactosidase	jelly	roll	domain
Peptidase_S29	PF02907.15	gi|257053769|ref|YP_003131602.1|	-	0.032	14.0	0.1	0.032	14.0	0.1	1.1	1	0	0	1	1	1	0	Hepatitis	C	virus	NS3	protease
Diphthami_syn_2	PF01902.17	gi|257053770|ref|YP_003131603.1|	-	4.2e-53	180.1	0.0	7e-53	179.4	0.0	1.3	1	1	0	1	1	1	1	Diphthamide	synthase
QueC	PF06508.13	gi|257053770|ref|YP_003131603.1|	-	0.25	10.8	0.0	0.38	10.2	0.0	1.2	1	0	0	1	1	1	0	Queuosine	biosynthesis	protein	QueC
NTP_transferase	PF00483.23	gi|257053771|ref|YP_003131604.1|	-	9.1e-39	133.5	0.0	1.3e-38	133.0	0.0	1.2	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|257053771|ref|YP_003131604.1|	-	5.4e-12	46.4	0.0	5.9e-12	46.2	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Hexapep	PF00132.24	gi|257053771|ref|YP_003131604.1|	-	0.2	11.5	3.1	2.1	8.2	0.3	3.4	2	2	0	2	2	2	0	Bacterial	transferase	hexapeptide	(six	repeats)
HTH_10	PF04967.12	gi|257053772|ref|YP_003131605.1|	-	1.7e-20	72.5	0.1	2.7e-20	71.9	0.1	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|257053772|ref|YP_003131605.1|	-	3.9e-05	23.6	5.8	6.6e-05	22.8	4.4	2.0	2	1	0	2	2	2	1	GAF	and	HTH_10	associated	domain
Homeodomain	PF00046.29	gi|257053772|ref|YP_003131605.1|	-	0.061	13.2	0.0	0.12	12.3	0.0	1.4	1	0	0	1	1	1	0	Homeodomain
SAM_Ste50p	PF09235.10	gi|257053772|ref|YP_003131605.1|	-	0.15	12.3	0.3	12	6.3	0.0	2.8	3	0	0	3	3	3	0	Ste50p,	sterile	alpha	motif
PALP	PF00291.25	gi|257053773|ref|YP_003131606.1|	-	2.5e-59	201.1	2.6	2.8e-59	200.9	2.6	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
DUF1508	PF07411.12	gi|257053774|ref|YP_003131607.1|	-	2.3e-83	273.9	15.4	1.3e-20	73.0	0.2	5.3	5	0	0	5	5	5	5	Domain	of	unknown	function	(DUF1508)
Imm61	PF15598.6	gi|257053774|ref|YP_003131607.1|	-	0.037	13.9	0.1	20	5.1	0.0	4.0	3	1	1	4	4	4	0	Immunity	protein	61
DIPSY	PF11763.8	gi|257053774|ref|YP_003131607.1|	-	0.042	14.0	0.0	3.3	7.9	0.0	3.6	5	0	0	5	5	5	0	Cell-wall	adhesin	ligand-binding	C-terminal
UPF0242	PF06785.11	gi|257053774|ref|YP_003131607.1|	-	0.077	13.1	0.0	0.25	11.4	0.0	1.8	2	0	0	2	2	2	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
APG6_N	PF17675.1	gi|257053774|ref|YP_003131607.1|	-	0.085	13.4	3.0	0.19	12.2	3.0	1.5	1	0	0	1	1	1	0	Apg6	coiled-coil	region
DUF5110	PF17137.4	gi|257053774|ref|YP_003131607.1|	-	0.14	12.4	3.3	21	5.5	0.0	4.4	5	0	0	5	5	5	0	Domain	of	unknown	function	(DUF5110)
PRKG1_interact	PF15898.5	gi|257053774|ref|YP_003131607.1|	-	0.34	11.8	1.8	7.9	7.4	0.7	2.5	2	0	0	2	2	2	0	cGMP-dependent	protein	kinase	interacting	domain
Snf7	PF03357.21	gi|257053774|ref|YP_003131607.1|	-	0.49	10.0	2.5	0.91	9.1	2.5	1.4	1	0	0	1	1	1	0	Snf7
HlyIII	PF03006.20	gi|257053774|ref|YP_003131607.1|	-	0.66	9.7	5.1	0.7	9.6	4.2	1.4	1	1	1	2	2	2	0	Haemolysin-III	related
Syntaxin-6_N	PF09177.11	gi|257053774|ref|YP_003131607.1|	-	0.79	10.3	2.3	2.2	8.9	0.9	2.4	2	0	0	2	2	2	0	Syntaxin	6,	N-terminal
DUF2157	PF09925.9	gi|257053774|ref|YP_003131607.1|	-	0.91	9.3	6.5	15	5.4	6.5	2.2	1	1	0	1	1	1	0	Predicted	membrane	protein	(DUF2157)
DUF2914	PF11141.8	gi|257053774|ref|YP_003131607.1|	-	1.2	8.9	4.9	9.6	6.1	0.0	3.4	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF2914)
ATG16	PF08614.11	gi|257053774|ref|YP_003131607.1|	-	1.4	9.1	9.4	0.42	10.8	6.6	1.5	2	0	0	2	2	1	0	Autophagy	protein	16	(ATG16)
Tetraspanin	PF00335.20	gi|257053774|ref|YP_003131607.1|	-	3.8	7.2	4.8	7.4	6.2	4.8	1.4	1	1	0	1	1	1	0	Tetraspanin	family
DCD	PF06559.11	gi|257053775|ref|YP_003131608.1|	-	1.9e-16	59.8	0.0	1e-13	50.8	0.0	2.1	1	1	0	1	1	1	1	2'-deoxycytidine	5'-triphosphate	deaminase	(DCD)
dUTPase	PF00692.19	gi|257053775|ref|YP_003131608.1|	-	2e-13	50.2	0.0	2.8e-13	49.7	0.0	1.2	1	0	0	1	1	1	1	dUTPase
ThiP_synth	PF10120.9	gi|257053776|ref|YP_003131609.1|	-	2.4e-51	173.6	0.2	3.3e-51	173.2	0.2	1.2	1	0	0	1	1	1	1	Thiamine-phosphate	synthase
HTH_3	PF01381.22	gi|257053776|ref|YP_003131609.1|	-	1.4e-06	28.2	0.1	3e-06	27.2	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix
HTH_31	PF13560.6	gi|257053776|ref|YP_003131609.1|	-	2.4e-05	24.6	1.5	0.00015	22.0	1.5	2.4	1	1	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|257053776|ref|YP_003131609.1|	-	0.00034	20.1	0.0	0.00082	18.9	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_37	PF13744.6	gi|257053776|ref|YP_003131609.1|	-	0.00049	20.0	0.0	0.0011	18.9	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
Sigma70_r4	PF04545.16	gi|257053776|ref|YP_003131609.1|	-	0.001	18.5	0.0	0.001	18.5	0.0	2.7	3	0	0	3	3	3	1	Sigma-70,	region	4
HTH_19	PF12844.7	gi|257053776|ref|YP_003131609.1|	-	0.0011	19.0	0.1	0.002	18.1	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_26	PF13443.6	gi|257053776|ref|YP_003131609.1|	-	0.0025	18.2	0.0	0.0049	17.3	0.0	1.4	1	0	0	1	1	1	1	Cro/C1-type	HTH	DNA-binding	domain
HTH_23	PF13384.6	gi|257053776|ref|YP_003131609.1|	-	0.0032	17.2	0.0	0.0096	15.7	0.0	1.8	1	0	0	1	1	1	1	Homeodomain-like	domain
MarR_2	PF12802.7	gi|257053776|ref|YP_003131609.1|	-	0.0056	16.5	0.1	0.12	12.3	0.0	3.0	2	0	0	2	2	2	1	MarR	family
HTH_IclR	PF09339.10	gi|257053776|ref|YP_003131609.1|	-	0.055	13.3	0.8	0.88	9.4	0.0	3.0	3	0	0	3	3	3	0	IclR	helix-turn-helix	domain
HTH_Tnp_ISL3	PF13542.6	gi|257053776|ref|YP_003131609.1|	-	0.069	12.6	0.1	0.26	10.7	0.0	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_38	PF13936.6	gi|257053776|ref|YP_003131609.1|	-	0.083	12.7	0.3	0.35	10.7	0.0	2.1	2	0	0	2	2	2	0	Helix-turn-helix	domain
YdaS_antitoxin	PF15943.5	gi|257053776|ref|YP_003131609.1|	-	0.089	12.7	0.0	0.21	11.4	0.0	1.6	1	0	0	1	1	1	0	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
P22_Cro	PF14549.6	gi|257053776|ref|YP_003131609.1|	-	0.11	12.3	0.1	0.32	10.9	0.1	1.7	2	0	0	2	2	2	0	DNA-binding	transcriptional	regulator	Cro
HTH_10	PF04967.12	gi|257053776|ref|YP_003131609.1|	-	0.16	11.8	0.0	0.42	10.5	0.0	1.7	1	0	0	1	1	1	0	HTH	DNA	binding	domain
Methyltransf_25	PF13649.6	gi|257053777|ref|YP_003131610.1|	-	4.1e-15	56.3	0.0	6.5e-15	55.6	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|257053777|ref|YP_003131610.1|	-	6.6e-15	55.1	0.0	7.4e-15	54.9	0.0	1.0	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_11	PF08241.12	gi|257053777|ref|YP_003131610.1|	-	6.2e-14	52.4	0.0	9.8e-14	51.8	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|257053777|ref|YP_003131610.1|	-	2.9e-13	49.9	0.0	3.3e-13	49.7	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.19	gi|257053777|ref|YP_003131610.1|	-	6.3e-12	45.7	0.0	8.8e-12	45.2	0.0	1.1	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_12	PF08242.12	gi|257053777|ref|YP_003131610.1|	-	1.5e-11	44.9	0.0	2.6e-11	44.1	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|257053777|ref|YP_003131610.1|	-	8.9e-11	41.9	0.0	1.3e-10	41.4	0.0	1.3	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_4	PF02390.17	gi|257053777|ref|YP_003131610.1|	-	6.6e-05	22.5	0.0	8.6e-05	22.1	0.0	1.2	1	0	0	1	1	1	1	Putative	methyltransferase
FtsJ	PF01728.19	gi|257053777|ref|YP_003131610.1|	-	0.00012	22.3	0.0	0.00023	21.3	0.0	1.3	1	1	0	1	1	1	1	FtsJ-like	methyltransferase
Methyltransf_2	PF00891.18	gi|257053777|ref|YP_003131610.1|	-	0.065	12.5	0.0	0.071	12.4	0.0	1.1	1	0	0	1	1	1	0	O-methyltransferase	domain
CMAS	PF02353.20	gi|257053777|ref|YP_003131610.1|	-	0.071	12.4	0.1	0.1	11.9	0.1	1.1	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
Methyltr_RsmB-F	PF01189.17	gi|257053777|ref|YP_003131610.1|	-	0.098	12.3	0.0	0.14	11.7	0.0	1.2	1	0	0	1	1	1	0	16S	rRNA	methyltransferase	RsmB/F
MTS	PF05175.14	gi|257053777|ref|YP_003131610.1|	-	0.15	11.6	0.0	0.2	11.2	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	small	domain
Thi4	PF01946.17	gi|257053779|ref|YP_003131612.1|	-	5.1e-63	212.4	0.3	1.4e-50	171.7	0.2	2.1	2	0	0	2	2	2	2	Thi4	family
FAD_oxidored	PF12831.7	gi|257053779|ref|YP_003131612.1|	-	7.8e-11	42.0	0.2	1.1e-10	41.4	0.2	1.2	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.19	gi|257053779|ref|YP_003131612.1|	-	4.3e-10	39.4	0.0	7.4e-10	38.6	0.0	1.3	1	0	0	1	1	1	1	FAD	binding	domain
FAD_binding_2	PF00890.24	gi|257053779|ref|YP_003131612.1|	-	4.1e-09	36.0	1.9	1.1e-07	31.3	0.1	2.4	1	1	2	3	3	3	1	FAD	binding	domain
HI0933_like	PF03486.14	gi|257053779|ref|YP_003131612.1|	-	1.1e-08	34.3	0.1	1.5e-08	33.8	0.1	1.2	1	0	0	1	1	1	1	HI0933-like	protein
DAO	PF01266.24	gi|257053779|ref|YP_003131612.1|	-	3.2e-08	33.6	0.5	2.3e-05	24.1	0.1	2.2	1	1	0	2	2	2	2	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.6	gi|257053779|ref|YP_003131612.1|	-	1.4e-07	31.7	0.1	3.2e-07	30.5	0.1	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_2	PF07992.14	gi|257053779|ref|YP_003131612.1|	-	1.4e-07	31.0	0.1	2.7e-07	30.1	0.1	1.5	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|257053779|ref|YP_003131612.1|	-	5.9e-05	23.6	0.8	0.00015	22.3	0.2	1.9	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|257053779|ref|YP_003131612.1|	-	9.3e-05	21.8	0.3	0.00017	21.0	0.3	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Trp_halogenase	PF04820.14	gi|257053779|ref|YP_003131612.1|	-	0.00021	20.3	0.0	0.026	13.4	0.0	2.2	2	0	0	2	2	2	1	Tryptophan	halogenase
Lycopene_cycl	PF05834.12	gi|257053779|ref|YP_003131612.1|	-	0.00047	19.3	0.3	0.0022	17.1	0.3	1.9	1	1	0	1	1	1	1	Lycopene	cyclase	protein
GIDA	PF01134.22	gi|257053779|ref|YP_003131612.1|	-	0.0012	18.0	0.1	0.002	17.3	0.1	1.3	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
NAD_binding_9	PF13454.6	gi|257053779|ref|YP_003131612.1|	-	0.0015	18.5	0.1	0.0036	17.3	0.1	1.7	1	0	0	1	1	1	1	FAD-NAD(P)-binding
Amino_oxidase	PF01593.24	gi|257053779|ref|YP_003131612.1|	-	0.0026	17.1	0.0	0.0037	16.6	0.0	1.2	1	0	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
Shikimate_DH	PF01488.20	gi|257053779|ref|YP_003131612.1|	-	0.013	15.5	0.0	0.077	13.1	0.0	1.9	2	0	0	2	2	2	0	Shikimate	/	quinate	5-dehydrogenase
NAD_binding_7	PF13241.6	gi|257053779|ref|YP_003131612.1|	-	0.017	15.5	0.0	0.029	14.8	0.0	1.5	1	1	0	1	1	1	0	Putative	NAD(P)-binding
TrkA_N	PF02254.18	gi|257053779|ref|YP_003131612.1|	-	0.063	13.5	0.1	0.12	12.6	0.1	1.5	1	0	0	1	1	1	0	TrkA-N	domain
UPF0126	PF03458.13	gi|257053780|ref|YP_003131613.1|	-	1.9e-33	114.2	30.7	1.5e-17	63.2	8.5	2.8	3	0	0	3	3	3	2	UPF0126	domain
CheC	PF04509.12	gi|257053781|ref|YP_003131614.1|	-	2.7e-13	49.6	0.1	6.3e-13	48.4	0.1	1.7	1	0	0	1	1	1	1	CheC-like	family
CheX	PF13690.6	gi|257053781|ref|YP_003131614.1|	-	2e-05	24.7	0.1	3.5e-05	23.9	0.1	1.4	1	0	0	1	1	1	1	Chemotaxis	phosphatase	CheX
FliM	PF02154.15	gi|257053781|ref|YP_003131614.1|	-	0.038	13.9	0.0	0.057	13.3	0.0	1.2	1	0	0	1	1	1	0	Flagellar	motor	switch	protein	FliM
PPS_PS	PF02006.16	gi|257053782|ref|YP_003131615.1|	-	1.3e-74	249.6	0.6	1.6e-74	249.3	0.6	1.1	1	0	0	1	1	1	1	Phosphopantothenate/pantothenate	synthetase
RTT107_BRCT_6	PF16771.5	gi|257053782|ref|YP_003131615.1|	-	0.13	12.5	0.0	0.21	11.7	0.0	1.3	1	0	0	1	1	1	0	Regulator	of	Ty1	transposition	protein	107	BRCT	domain
GHMP_kinases_N	PF00288.26	gi|257053783|ref|YP_003131616.1|	-	5.1e-09	36.2	4.4	8.2e-09	35.6	3.6	1.8	2	0	0	2	2	2	1	GHMP	kinases	N	terminal	domain
UPF0175	PF03683.13	gi|257053784|ref|YP_003131617.1|	-	4e-08	32.9	0.6	5.2e-08	32.5	0.4	1.3	1	1	0	1	1	1	1	Uncharacterised	protein	family	(UPF0175)
RHH_1	PF01402.21	gi|257053784|ref|YP_003131617.1|	-	0.0095	15.8	1.1	0.022	14.7	0.3	2.0	2	1	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
Abhydrolase_8	PF06259.12	gi|257053786|ref|YP_003131619.1|	-	3e-05	23.7	2.2	0.00024	20.8	2.2	2.1	1	1	0	1	1	1	1	Alpha/beta	hydrolase
Lipase_3	PF01764.25	gi|257053786|ref|YP_003131619.1|	-	5.6e-05	23.0	0.1	9.3e-05	22.3	0.1	1.3	1	0	0	1	1	1	1	Lipase	(class	3)
PGAP1	PF07819.13	gi|257053786|ref|YP_003131619.1|	-	0.0025	17.6	0.0	0.0041	16.9	0.0	1.3	1	0	0	1	1	1	1	PGAP1-like	protein
Hydrolase_4	PF12146.8	gi|257053786|ref|YP_003131619.1|	-	0.0039	16.5	0.0	0.0062	15.8	0.0	1.2	1	0	0	1	1	1	1	Serine	aminopeptidase,	S33
TAT_signal	PF10518.9	gi|257053786|ref|YP_003131619.1|	-	0.009	15.8	0.9	0.009	15.8	0.9	2.4	2	0	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF676	PF05057.14	gi|257053786|ref|YP_003131619.1|	-	0.031	13.8	0.0	0.046	13.2	0.0	1.2	1	0	0	1	1	1	0	Putative	serine	esterase	(DUF676)
DUF900	PF05990.12	gi|257053786|ref|YP_003131619.1|	-	0.048	13.2	0.0	0.087	12.3	0.0	1.3	1	0	0	1	1	1	0	Alpha/beta	hydrolase	of	unknown	function	(DUF900)
PUCC	PF03209.15	gi|257053786|ref|YP_003131619.1|	-	0.1	11.6	0.0	0.14	11.1	0.0	1.1	1	0	0	1	1	1	0	PUCC	protein
tRNA-synt_2	PF00152.20	gi|257053788|ref|YP_003131621.1|	-	9.4e-85	284.4	0.0	1.1e-84	284.2	0.0	1.0	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(D,	K	and	N)
tRNA_anti-codon	PF01336.25	gi|257053788|ref|YP_003131621.1|	-	1.5e-15	56.9	0.2	2.5e-15	56.2	0.2	1.4	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
tRNA-synt_2d	PF01409.20	gi|257053788|ref|YP_003131621.1|	-	0.0065	16.0	0.1	0.073	12.5	0.0	2.3	3	0	0	3	3	3	1	tRNA	synthetases	class	II	core	domain	(F)
HTH_24	PF13412.6	gi|257053789|ref|YP_003131622.1|	-	6.4e-12	44.8	0.1	1.1e-11	44.0	0.1	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|257053789|ref|YP_003131622.1|	-	3.6e-11	42.7	0.7	8.5e-11	41.5	0.7	1.7	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|257053789|ref|YP_003131622.1|	-	1.1e-06	28.8	0.0	2.6e-06	27.6	0.0	1.6	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_11	PF08279.12	gi|257053789|ref|YP_003131622.1|	-	6.2e-06	26.1	0.0	1.8e-05	24.6	0.0	1.8	1	0	0	1	1	1	1	HTH	domain
HTH_20	PF12840.7	gi|257053789|ref|YP_003131622.1|	-	0.00016	21.6	0.0	0.00032	20.7	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|257053789|ref|YP_003131622.1|	-	0.00021	21.1	0.0	0.00045	20.0	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_DeoR	PF08220.12	gi|257053789|ref|YP_003131622.1|	-	0.00022	20.9	0.1	0.0004	20.1	0.1	1.4	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|257053789|ref|YP_003131622.1|	-	0.0018	18.0	0.1	0.0047	16.7	0.1	1.7	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_5	PF01022.20	gi|257053789|ref|YP_003131622.1|	-	0.0021	17.9	0.0	0.0036	17.1	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_23	PF13384.6	gi|257053789|ref|YP_003131622.1|	-	0.0027	17.4	0.0	0.0063	16.3	0.0	1.6	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_28	PF13518.6	gi|257053789|ref|YP_003131622.1|	-	0.0037	17.4	0.0	0.0091	16.1	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_29	PF13551.6	gi|257053789|ref|YP_003131622.1|	-	0.0055	16.7	0.0	0.011	15.8	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn	helix
MarR	PF01047.22	gi|257053789|ref|YP_003131622.1|	-	0.0059	16.5	0.0	0.01	15.7	0.0	1.4	1	0	0	1	1	1	1	MarR	family
Rrf2	PF02082.20	gi|257053789|ref|YP_003131622.1|	-	0.011	16.0	0.0	0.028	14.8	0.0	1.6	2	0	0	2	2	2	0	Transcriptional	regulator
Sigma70_r4_2	PF08281.12	gi|257053789|ref|YP_003131622.1|	-	0.019	14.6	0.1	0.046	13.4	0.1	1.6	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_Tnp_ISL3	PF13542.6	gi|257053789|ref|YP_003131622.1|	-	0.023	14.1	0.1	0.04	13.3	0.1	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_10	PF04967.12	gi|257053789|ref|YP_003131622.1|	-	0.025	14.4	0.1	0.044	13.6	0.1	1.4	1	0	0	1	1	1	0	HTH	DNA	binding	domain
HrcA_DNA-bdg	PF03444.15	gi|257053789|ref|YP_003131622.1|	-	0.034	13.8	0.0	0.07	12.8	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
Sigma70_r4	PF04545.16	gi|257053789|ref|YP_003131622.1|	-	0.035	13.6	0.1	0.11	12.1	0.0	1.8	2	0	0	2	2	2	0	Sigma-70,	region	4
HTH_38	PF13936.6	gi|257053789|ref|YP_003131622.1|	-	0.048	13.4	0.1	0.23	11.2	0.0	2.2	2	0	0	2	2	2	0	Helix-turn-helix	domain
GntR	PF00392.21	gi|257053789|ref|YP_003131622.1|	-	0.054	13.1	0.1	0.17	11.6	0.0	1.8	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
HTH_36	PF13730.6	gi|257053789|ref|YP_003131622.1|	-	0.12	12.4	0.0	0.2	11.6	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_Mga	PF08280.11	gi|257053789|ref|YP_003131622.1|	-	0.12	12.4	0.0	0.24	11.5	0.0	1.4	1	0	0	1	1	1	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
HTH_Crp_2	PF13545.6	gi|257053789|ref|YP_003131622.1|	-	0.13	12.3	0.5	0.33	11.0	0.0	2.0	3	0	0	3	3	3	0	Crp-like	helix-turn-helix	domain
TrkA_N	PF02254.18	gi|257053790|ref|YP_003131623.1|	-	9.5e-08	32.3	1.9	1.8e-07	31.4	1.9	1.5	1	1	0	1	1	1	1	TrkA-N	domain
Hydant_A_N	PF05378.13	gi|257053790|ref|YP_003131623.1|	-	0.0028	17.4	0.9	0.0031	17.2	0.9	1.2	1	0	0	1	1	1	1	Hydantoinase/oxoprolinase	N-terminal	region
AA_permease_2	PF13520.6	gi|257053791|ref|YP_003131624.1|	-	1.6e-41	142.5	44.0	2.1e-41	142.2	44.0	1.1	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.21	gi|257053791|ref|YP_003131624.1|	-	5.2e-40	137.4	43.5	6.7e-40	137.1	43.5	1.1	1	0	0	1	1	1	1	Amino	acid	permease
Usp	PF00582.26	gi|257053791|ref|YP_003131624.1|	-	4.1e-09	37.1	8.9	2.4e-07	31.4	0.6	3.0	3	1	0	3	3	3	2	Universal	stress	protein	family
Glyoxalase_4	PF13669.6	gi|257053791|ref|YP_003131624.1|	-	0.11	12.7	0.0	0.4	11.0	0.0	1.9	1	1	0	1	1	1	0	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
AAA_25	PF13481.6	gi|257053791|ref|YP_003131624.1|	-	5.1	6.6	7.5	2.7	7.5	0.2	2.8	2	1	1	3	3	3	0	AAA	domain
Topoisom_bac	PF01131.20	gi|257053792|ref|YP_003131625.1|	-	1.2e-123	413.2	0.0	1.5e-123	412.9	0.0	1.1	1	0	0	1	1	1	1	DNA	topoisomerase
zf-C4_Topoisom	PF01396.19	gi|257053792|ref|YP_003131625.1|	-	6.4e-20	70.6	19.0	2.2e-14	52.9	1.4	4.4	5	0	0	5	5	5	2	Topoisomerase	DNA	binding	C4	zinc	finger
Toprim	PF01751.22	gi|257053792|ref|YP_003131625.1|	-	6.5e-20	71.3	0.0	1.5e-19	70.1	0.0	1.7	1	0	0	1	1	1	1	Toprim	domain
HHH_5	PF14520.6	gi|257053792|ref|YP_003131625.1|	-	2.7e-07	31.1	0.0	8.9e-07	29.4	0.0	2.0	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
Cdd1	PF11731.8	gi|257053792|ref|YP_003131625.1|	-	0.00016	21.8	0.0	0.00047	20.3	0.0	1.8	1	0	0	1	1	1	1	Pathogenicity	locus
HHH	PF00633.23	gi|257053792|ref|YP_003131625.1|	-	0.013	15.4	0.0	0.045	13.6	0.0	1.9	1	0	0	1	1	1	0	Helix-hairpin-helix	motif
DNA_pol_lambd_f	PF10391.9	gi|257053792|ref|YP_003131625.1|	-	0.013	15.3	0.0	0.055	13.3	0.0	2.1	1	0	0	1	1	1	0	Fingers	domain	of	DNA	polymerase	lambda
Toprim_4	PF13662.6	gi|257053792|ref|YP_003131625.1|	-	0.015	15.8	0.0	0.05	14.1	0.0	2.0	1	0	0	1	1	1	0	Toprim	domain
Toprim_2	PF13155.6	gi|257053792|ref|YP_003131625.1|	-	0.047	14.1	0.1	0.2	12.1	0.0	2.1	2	0	0	2	2	1	0	Toprim-like
Ogr_Delta	PF04606.12	gi|257053792|ref|YP_003131625.1|	-	0.22	11.5	9.0	0.6	10.1	0.1	3.7	3	1	0	3	3	3	0	Ogr/Delta-like	zinc	finger
Rubredoxin_2	PF18073.1	gi|257053792|ref|YP_003131625.1|	-	0.69	9.7	6.4	3.4	7.5	0.0	3.1	3	0	0	3	3	3	0	Rubredoxin	metal	binding	domain
Zn-ribbon_8	PF09723.10	gi|257053792|ref|YP_003131625.1|	-	0.72	10.0	13.3	8.1	6.7	0.0	4.5	3	1	1	4	4	4	0	Zinc	ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|257053792|ref|YP_003131625.1|	-	5.6	6.6	10.0	4.2	7.0	0.1	3.7	3	1	0	3	3	3	0	TFIIB	zinc-binding
DUF2072	PF09845.9	gi|257053792|ref|YP_003131625.1|	-	7.3	6.8	5.6	18	5.6	2.5	2.9	3	0	0	3	3	3	0	Zn-ribbon	containing	protein
GatB_N	PF02934.15	gi|257053795|ref|YP_003131628.1|	-	4.2e-98	328.1	0.0	6e-98	327.6	0.0	1.1	1	0	0	1	1	1	1	GatB/GatE	catalytic	domain
GatB_Yqey	PF02637.18	gi|257053795|ref|YP_003131628.1|	-	1.3e-39	135.5	0.0	2e-39	134.8	0.0	1.3	1	0	0	1	1	1	1	GatB	domain
Lsr2	PF11774.8	gi|257053795|ref|YP_003131628.1|	-	0.085	13.0	1.5	0.21	11.7	1.5	1.8	1	0	0	1	1	1	0	Lsr2
MtrG	PF04210.13	gi|257053795|ref|YP_003131628.1|	-	0.17	11.8	2.0	0.36	10.7	0.2	2.5	3	0	0	3	3	3	0	Tetrahydromethanopterin	S-methyltransferase,	subunit	G
FlaC_arch	PF05377.11	gi|257053796|ref|YP_003131629.1|	-	0.002	18.5	0.6	0.002	18.5	0.6	2.0	2	0	0	2	2	2	1	Flagella	accessory	protein	C	(FlaC)
SlyX	PF04102.12	gi|257053796|ref|YP_003131629.1|	-	0.003	18.2	0.4	0.003	18.2	0.4	1.8	2	0	0	2	2	2	1	SlyX
TRAF_BIRC3_bd	PF16673.5	gi|257053796|ref|YP_003131629.1|	-	0.04	13.7	4.1	0.98	9.3	0.0	2.5	2	1	0	2	2	2	0	TNF	receptor-associated	factor	BIRC3	binding	domain
PKcGMP_CC	PF16808.5	gi|257053796|ref|YP_003131629.1|	-	0.15	11.9	2.7	3.9	7.4	0.5	2.5	1	1	1	2	2	2	0	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
Tropomyosin_1	PF12718.7	gi|257053796|ref|YP_003131629.1|	-	1.1	9.4	10.9	4.1	7.5	10.8	1.7	1	1	0	1	1	1	0	Tropomyosin	like
Spc24	PF08286.11	gi|257053796|ref|YP_003131629.1|	-	3.2	8.1	7.5	27	5.1	7.5	2.0	1	1	0	1	1	1	0	Spc24	subunit	of	Ndc80
SMC_N	PF02463.19	gi|257053797|ref|YP_003131630.1|	-	3.2e-55	187.0	39.1	4.6e-31	108.0	0.0	2.7	2	2	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
SMC_hinge	PF06470.13	gi|257053797|ref|YP_003131630.1|	-	5.7e-30	104.0	0.0	1.3e-29	102.8	0.0	1.7	1	0	0	1	1	1	1	SMC	proteins	Flexible	Hinge	Domain
AAA_15	PF13175.6	gi|257053797|ref|YP_003131630.1|	-	2.1e-12	47.5	30.8	6.5e-12	45.8	9.1	4.7	2	2	0	2	2	2	1	AAA	ATPase	domain
ATG16	PF08614.11	gi|257053797|ref|YP_003131630.1|	-	3.1e-09	37.3	152.3	0.057	13.6	23.9	8.5	2	2	6	8	8	8	5	Autophagy	protein	16	(ATG16)
Spc7	PF08317.11	gi|257053797|ref|YP_003131630.1|	-	2.6e-08	33.1	142.5	0.0017	17.3	17.7	8.8	2	2	6	8	8	8	5	Spc7	kinetochore	protein
AAA_21	PF13304.6	gi|257053797|ref|YP_003131630.1|	-	2.9e-08	33.9	26.6	0.00012	22.0	0.0	5.0	3	2	1	4	4	4	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_23	PF13476.6	gi|257053797|ref|YP_003131630.1|	-	4.3e-07	30.6	42.1	4.3e-07	30.6	42.1	8.8	2	2	2	4	4	1	1	AAA	domain
AAA_29	PF13555.6	gi|257053797|ref|YP_003131630.1|	-	1.4e-06	27.9	0.0	4e-06	26.5	0.0	1.8	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
DUF1664	PF07889.12	gi|257053797|ref|YP_003131630.1|	-	2.9e-06	27.3	74.2	0.16	12.0	1.0	9.5	4	3	6	10	10	10	7	Protein	of	unknown	function	(DUF1664)
DUF724	PF05266.14	gi|257053797|ref|YP_003131630.1|	-	8.9e-06	25.7	106.1	0.0017	18.3	9.2	7.9	3	2	5	8	8	8	5	Protein	of	unknown	function	(DUF724)
AAA_13	PF13166.6	gi|257053797|ref|YP_003131630.1|	-	2.3e-05	23.3	25.4	2.3e-05	23.3	25.4	5.4	3	2	2	5	5	5	3	AAA	domain
Fib_alpha	PF08702.10	gi|257053797|ref|YP_003131630.1|	-	0.00012	22.3	61.5	0.00027	21.1	7.4	7.4	3	2	6	9	9	9	2	Fibrinogen	alpha/beta	chain	family
CENP-F_leu_zip	PF10473.9	gi|257053797|ref|YP_003131630.1|	-	0.00054	20.0	148.7	0.023	14.7	23.4	7.8	3	2	5	8	8	8	4	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Fez1	PF06818.15	gi|257053797|ref|YP_003131630.1|	-	0.0018	18.8	122.8	0.057	13.9	18.0	7.4	2	2	6	8	8	8	4	Fez1
Atg14	PF10186.9	gi|257053797|ref|YP_003131630.1|	-	0.0041	16.2	90.3	0.18	10.8	13.0	6.4	2	2	4	6	6	6	3	Vacuolar	sorting	38	and	autophagy-related	subunit	14
EzrA	PF06160.12	gi|257053797|ref|YP_003131630.1|	-	0.0061	14.8	110.9	0.014	13.6	5.8	6.3	2	2	2	6	6	6	4	Septation	ring	formation	regulator,	EzrA
APG6_N	PF17675.1	gi|257053797|ref|YP_003131630.1|	-	0.007	16.9	188.2	0.67	10.5	16.5	9.9	3	2	3	7	7	7	2	Apg6	coiled-coil	region
Laminin_II	PF06009.12	gi|257053797|ref|YP_003131630.1|	-	0.026	14.5	71.5	0.02	14.9	4.1	7.8	2	2	3	8	8	8	0	Laminin	Domain	II
GAS	PF13851.6	gi|257053797|ref|YP_003131630.1|	-	0.036	13.4	118.2	0.041	13.2	14.4	8.0	2	2	4	7	7	6	0	Growth-arrest	specific	micro-tubule	binding
MscS_porin	PF12795.7	gi|257053797|ref|YP_003131630.1|	-	0.062	12.8	123.4	0.083	12.4	13.5	5.4	2	2	3	5	5	5	0	Mechanosensitive	ion	channel	porin	domain
Baculo_PEP_C	PF04513.12	gi|257053797|ref|YP_003131630.1|	-	0.24	11.5	36.5	0.27	11.3	0.2	7.5	4	2	2	6	6	6	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
UPF0242	PF06785.11	gi|257053797|ref|YP_003131630.1|	-	0.3	11.2	141.7	0.043	13.9	14.5	7.8	2	2	6	8	8	7	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
DUF3584	PF12128.8	gi|257053797|ref|YP_003131630.1|	-	0.39	8.2	141.1	0.0078	13.8	55.6	4.3	2	2	2	4	4	4	0	Protein	of	unknown	function	(DUF3584)
Filament	PF00038.21	gi|257053797|ref|YP_003131630.1|	-	0.94	9.0	132.4	0.02	14.5	8.9	7.3	2	2	4	6	6	6	0	Intermediate	filament	protein
NPV_P10	PF05531.12	gi|257053797|ref|YP_003131630.1|	-	0.99	9.9	48.4	4.1	7.9	2.1	9.2	3	2	4	7	7	7	0	Nucleopolyhedrovirus	P10	protein
FPP	PF05911.11	gi|257053797|ref|YP_003131630.1|	-	1.6	6.8	109.4	0.2	9.8	18.5	5.3	2	2	3	5	5	5	0	Filament-like	plant	protein,	long	coiled-coil
DUF3450	PF11932.8	gi|257053797|ref|YP_003131630.1|	-	2.5	7.3	118.9	0.0072	15.7	12.4	9.4	2	2	8	10	10	10	0	Protein	of	unknown	function	(DUF3450)
DUF4201	PF13870.6	gi|257053797|ref|YP_003131630.1|	-	5.7	6.6	103.4	0.37	10.5	14.1	8.9	3	2	5	8	8	8	0	Domain	of	unknown	function	(DUF4201)
SMC_ScpA	PF02616.14	gi|257053798|ref|YP_003131631.1|	-	4.4e-14	53.0	0.1	5.3e-09	36.3	0.0	2.3	2	0	0	2	2	2	2	Segregation	and	condensation	protein	ScpA
RHH_1	PF01402.21	gi|257053798|ref|YP_003131631.1|	-	3.6	7.6	6.5	9.7	6.3	2.4	2.9	2	1	0	2	2	2	0	Ribbon-helix-helix	protein,	copG	family
Mem_trans	PF03547.18	gi|257053800|ref|YP_003131633.1|	-	5.7e-21	74.4	16.4	4.7e-13	48.3	2.9	2.0	1	1	1	2	2	2	2	Membrane	transport	protein
Pribosyltran	PF00156.27	gi|257053801|ref|YP_003131634.1|	-	7.8e-17	61.2	0.0	1.1e-16	60.7	0.0	1.2	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.6	gi|257053801|ref|YP_003131634.1|	-	0.07	12.6	0.0	0.099	12.1	0.0	1.2	1	0	0	1	1	1	0	Uracil	phosphoribosyltransferase
DUF3887	PF13026.6	gi|257053802|ref|YP_003131635.1|	-	8.9e-14	52.1	0.1	2.1e-13	50.9	0.1	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3887)
Hydrolase_4	PF12146.8	gi|257053802|ref|YP_003131635.1|	-	2.1e-10	40.3	0.0	5e-10	39.1	0.0	1.6	1	1	0	1	1	1	1	Serine	aminopeptidase,	S33
Abhydrolase_6	PF12697.7	gi|257053802|ref|YP_003131635.1|	-	1.6e-09	38.7	0.5	7.3e-09	36.5	0.1	2.0	2	0	0	2	2	2	1	Alpha/beta	hydrolase	family
DLH	PF01738.18	gi|257053802|ref|YP_003131635.1|	-	8.9e-06	25.4	0.0	0.044	13.3	0.0	2.5	2	0	0	2	2	2	2	Dienelactone	hydrolase	family
Peptidase_S9	PF00326.21	gi|257053802|ref|YP_003131635.1|	-	4.9e-05	22.9	0.0	0.32	10.4	0.0	2.3	2	0	0	2	2	2	2	Prolyl	oligopeptidase	family
Abhydrolase_5	PF12695.7	gi|257053802|ref|YP_003131635.1|	-	0.0047	16.7	0.0	0.014	15.2	0.0	1.7	2	0	0	2	2	2	1	Alpha/beta	hydrolase	family
Abhydrolase_3	PF07859.13	gi|257053802|ref|YP_003131635.1|	-	0.012	15.5	0.5	0.04	13.8	0.1	2.1	2	1	0	2	2	2	0	alpha/beta	hydrolase	fold
AXE1	PF05448.12	gi|257053802|ref|YP_003131635.1|	-	0.066	11.9	0.0	0.36	9.4	0.0	1.9	1	1	1	2	2	2	0	Acetyl	xylan	esterase	(AXE1)
Ser_hydrolase	PF06821.13	gi|257053802|ref|YP_003131635.1|	-	0.15	11.9	0.0	0.51	10.2	0.0	1.9	2	0	0	2	2	2	0	Serine	hydrolase
PhzC-PhzF	PF02567.16	gi|257053803|ref|YP_003131636.1|	-	6.2e-67	226.0	0.0	7.1e-67	225.8	0.0	1.0	1	0	0	1	1	1	1	Phenazine	biosynthesis-like	protein
DAP_epimerase	PF01678.19	gi|257053803|ref|YP_003131636.1|	-	1.4e-05	25.3	0.1	0.069	13.3	0.0	2.2	2	0	0	2	2	2	2	Diaminopimelate	epimerase
Pro_racemase	PF05544.11	gi|257053803|ref|YP_003131636.1|	-	0.029	13.4	0.0	0.044	12.8	0.0	1.2	1	0	0	1	1	1	0	Proline	racemase
Pyridoxal_deC	PF00282.19	gi|257053804|ref|YP_003131637.1|	-	2.6e-24	85.7	0.0	7.8e-24	84.1	0.0	1.7	1	1	0	1	1	1	1	Pyridoxal-dependent	decarboxylase	conserved	domain
Aminotran_5	PF00266.19	gi|257053804|ref|YP_003131637.1|	-	1.4e-10	40.7	0.0	1.6e-10	40.5	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class-V
Aminotran_1_2	PF00155.21	gi|257053804|ref|YP_003131637.1|	-	9.9e-08	31.5	0.0	2.1e-07	30.5	0.0	1.6	1	1	0	1	1	1	1	Aminotransferase	class	I	and	II
Beta_elim_lyase	PF01212.21	gi|257053804|ref|YP_003131637.1|	-	3e-05	23.5	0.1	0.00011	21.6	0.1	1.7	1	1	0	1	1	1	1	Beta-eliminating	lyase
SHMT	PF00464.19	gi|257053804|ref|YP_003131637.1|	-	0.00061	18.5	0.0	0.0022	16.6	0.0	1.7	1	1	0	1	1	1	1	Serine	hydroxymethyltransferase
DegT_DnrJ_EryC1	PF01041.17	gi|257053804|ref|YP_003131637.1|	-	0.011	15.1	0.5	0.02	14.2	0.5	1.4	1	0	0	1	1	1	0	DegT/DnrJ/EryC1/StrS	aminotransferase	family
SNARE_assoc	PF09335.11	gi|257053805|ref|YP_003131638.1|	-	1.5e-11	44.8	3.8	4.4e-11	43.3	3.8	1.8	1	1	0	1	1	1	1	SNARE	associated	Golgi	protein
Tail_VII	PF17091.5	gi|257053805|ref|YP_003131638.1|	-	8.2	6.4	7.8	20	5.2	0.1	3.6	3	0	0	3	3	3	0	Inovirus	G7P	protein
Cation_efflux	PF01545.21	gi|257053806|ref|YP_003131639.1|	-	2.9e-28	99.0	10.7	4.2e-28	98.4	10.7	1.2	1	0	0	1	1	1	1	Cation	efflux	family
ZT_dimer	PF16916.5	gi|257053806|ref|YP_003131639.1|	-	5.2e-07	29.7	0.0	8.8e-07	29.0	0.0	1.3	1	0	0	1	1	1	1	Dimerisation	domain	of	Zinc	Transporter
SAM_LFY	PF01698.16	gi|257053806|ref|YP_003131639.1|	-	0.15	12.0	0.0	0.36	10.8	0.0	1.6	1	0	0	1	1	1	0	Floricaula	/	Leafy	protein	SAM	domain
Glyco_trans_2_3	PF13632.6	gi|257053807|ref|YP_003131640.1|	-	4.6e-13	49.5	1.9	4.6e-13	49.5	1.9	2.1	2	0	0	2	2	2	1	Glycosyl	transferase	family	group	2
Glyco_tranf_2_3	PF13641.6	gi|257053807|ref|YP_003131640.1|	-	0.0012	18.8	4.5	0.0029	17.5	4.5	1.7	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Trp_oprn_chp	PF09534.10	gi|257053807|ref|YP_003131640.1|	-	0.0042	16.9	0.4	0.011	15.5	0.4	1.7	1	0	0	1	1	1	1	Tryptophan-associated	transmembrane	protein	(Trp_oprn_chp)
DUF4491	PF14898.6	gi|257053807|ref|YP_003131640.1|	-	0.079	13.4	0.4	0.46	10.9	0.2	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4491)
DUF4382	PF14321.6	gi|257053808|ref|YP_003131641.1|	-	1.7e-29	102.8	0.2	1.7e-29	102.8	0.2	2.1	2	1	1	3	3	3	1	Domain	of	unknown	function	(DUF4382)
CarbopepD_reg_2	PF13715.6	gi|257053808|ref|YP_003131641.1|	-	0.0012	18.8	5.6	0.54	10.3	0.1	3.9	2	1	2	4	4	4	2	CarboxypepD_reg-like	domain
DUF4198	PF10670.9	gi|257053808|ref|YP_003131641.1|	-	0.038	14.4	5.4	0.46	10.8	0.2	3.0	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4198)
CarboxypepD_reg	PF13620.6	gi|257053808|ref|YP_003131641.1|	-	0.092	13.0	18.2	0.62	10.4	0.4	5.0	2	2	1	4	4	4	0	Carboxypeptidase	regulatory-like	domain
DUF2846	PF11008.8	gi|257053808|ref|YP_003131641.1|	-	0.15	12.1	0.0	8.8	6.4	0.0	3.0	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2846)
IPU_b_solenoid	PF18783.1	gi|257053808|ref|YP_003131641.1|	-	0.26	11.3	0.8	0.59	10.2	0.1	2.0	2	0	0	2	2	2	0	Isopullulanase	beta-solenoid	repeat
Cadherin-like	PF12733.7	gi|257053808|ref|YP_003131641.1|	-	0.76	10.3	14.0	1.8	9.1	0.8	3.5	2	1	1	3	3	3	0	Cadherin-like	beta	sandwich	domain
NYN	PF01936.18	gi|257053809|ref|YP_003131642.1|	-	9e-18	65.2	0.0	1e-17	65.0	0.0	1.0	1	0	0	1	1	1	1	NYN	domain
PIN7	PF18475.1	gi|257053809|ref|YP_003131642.1|	-	0.035	14.7	0.0	0.037	14.6	0.0	1.2	1	0	0	1	1	1	0	PIN	domain
TatD_DNase	PF01026.21	gi|257053810|ref|YP_003131643.1|	-	5.2e-17	62.1	0.0	2.5e-15	56.6	0.0	2.0	1	1	0	1	1	1	1	TatD	related	DNase
Lactamase_B_3	PF13483.6	gi|257053811|ref|YP_003131644.1|	-	2e-21	76.5	0.1	3.6e-21	75.7	0.1	1.4	2	0	0	2	2	2	1	Beta-lactamase	superfamily	domain
Lactamase_B_2	PF12706.7	gi|257053811|ref|YP_003131644.1|	-	2e-18	66.6	1.6	2.8e-18	66.2	1.6	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|257053811|ref|YP_003131644.1|	-	7.7e-10	39.1	1.7	1.1e-09	38.6	1.2	1.7	1	1	1	2	2	2	1	Metallo-beta-lactamase	superfamily
Trypsin_2	PF13365.6	gi|257053812|ref|YP_003131645.1|	-	2.1e-28	100.1	4.1	5.1e-28	98.9	4.1	1.7	1	0	0	1	1	1	1	Trypsin-like	peptidase	domain
Trypsin	PF00089.26	gi|257053812|ref|YP_003131645.1|	-	7.4e-14	52.1	0.2	2.4e-13	50.4	0.2	1.7	1	1	0	1	1	1	1	Trypsin
PDZ_2	PF13180.6	gi|257053812|ref|YP_003131645.1|	-	8.7e-11	42.0	4.2	4.8e-10	39.6	0.3	2.6	3	0	0	3	3	3	1	PDZ	domain
Tricorn_PDZ	PF14685.6	gi|257053812|ref|YP_003131645.1|	-	0.04	13.9	0.2	0.083	12.9	0.2	1.6	1	0	0	1	1	1	0	Tricorn	protease	PDZ	domain
Peptidase_S46	PF10459.9	gi|257053812|ref|YP_003131645.1|	-	0.097	11.3	0.6	0.14	10.8	0.6	1.2	1	0	0	1	1	1	0	Peptidase	S46
Metal_resist	PF13801.6	gi|257053813|ref|YP_003131646.1|	-	8.9e-05	22.7	6.1	0.0002	21.5	5.5	1.9	1	1	1	2	2	2	1	Heavy-metal	resistance
DUF1525	PF07511.11	gi|257053813|ref|YP_003131646.1|	-	0.0091	16.1	0.1	0.017	15.3	0.1	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1525)
Sld5	PF05916.11	gi|257053813|ref|YP_003131646.1|	-	0.054	14.0	0.3	0.088	13.3	0.3	1.3	1	0	0	1	1	1	0	GINS	complex	protein
Acyl-CoA_dh_2	PF08028.11	gi|257053813|ref|YP_003131646.1|	-	0.078	13.3	0.5	0.18	12.1	0.5	1.6	1	0	0	1	1	1	0	Acyl-CoA	dehydrogenase,	C-terminal	domain
DNA_primase_S	PF01896.19	gi|257053814|ref|YP_003131647.1|	-	1.1e-21	77.6	0.0	3.6e-21	76.0	0.0	1.7	1	1	0	1	1	1	1	DNA	primase	small	subunit
Acetyltransf_7	PF13508.7	gi|257053815|ref|YP_003131648.1|	-	4.7e-12	46.2	0.1	7.3e-12	45.5	0.1	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|257053815|ref|YP_003131648.1|	-	4.9e-11	42.7	0.2	5.9e-11	42.4	0.2	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|257053815|ref|YP_003131648.1|	-	1.5e-09	38.1	0.2	2e-09	37.7	0.2	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
FR47	PF08445.10	gi|257053815|ref|YP_003131648.1|	-	2.3e-08	33.9	0.0	3.9e-08	33.2	0.0	1.4	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_9	PF13527.7	gi|257053815|ref|YP_003131648.1|	-	0.00043	20.3	0.1	0.0073	16.4	0.1	2.2	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.7	gi|257053815|ref|YP_003131648.1|	-	0.0013	18.9	0.2	0.0019	18.4	0.2	1.6	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_6	PF13480.7	gi|257053815|ref|YP_003131648.1|	-	0.017	15.3	0.9	0.03	14.5	0.9	1.4	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
DUF502	PF04367.13	gi|257053816|ref|YP_003131649.1|	-	8.1e-25	86.8	0.0	8.1e-25	86.8	0.0	1.5	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF502)
Saf_2TM	PF18303.1	gi|257053816|ref|YP_003131649.1|	-	0.12	12.0	0.8	0.17	11.5	0.8	1.3	1	0	0	1	1	1	0	SAVED-fused	2TM	effector	domain
DUF4731	PF15875.5	gi|257053816|ref|YP_003131649.1|	-	0.49	10.6	2.4	27	5.0	0.0	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4731)
PspB	PF06667.12	gi|257053816|ref|YP_003131649.1|	-	2.2	8.4	5.2	26	5.0	0.0	2.4	2	0	0	2	2	2	0	Phage	shock	protein	B
ODV-E18	PF10717.9	gi|257053816|ref|YP_003131649.1|	-	6.6	6.7	10.2	0.25	11.3	2.0	2.3	1	1	1	2	2	2	0	Occlusion-derived	virus	envelope	protein	ODV-E18
Archease	PF01951.16	gi|257053817|ref|YP_003131650.1|	-	1.7e-35	122.2	0.1	1.9e-35	122.1	0.1	1.0	1	0	0	1	1	1	1	Archease	protein	family	(MTH1598/TM1083)
peroxidase	PF00141.23	gi|257053818|ref|YP_003131651.1|	-	1.4e-90	303.0	0.0	1.9e-51	175.0	0.0	2.1	2	0	0	2	2	2	2	Peroxidase
DUF4624	PF15417.6	gi|257053818|ref|YP_003131651.1|	-	0.1	12.5	1.3	28	4.5	0.1	3.7	4	0	0	4	4	4	0	Domain	of	unknown	function	(DUF4624)
RtcB	PF01139.17	gi|257053819|ref|YP_003131652.1|	-	3.1e-158	527.3	0.0	3.5e-158	527.1	0.0	1.0	1	0	0	1	1	1	1	tRNA-splicing	ligase	RtcB
VESA1_N	PF12785.7	gi|257053819|ref|YP_003131652.1|	-	0.23	10.4	0.0	0.32	9.9	0.0	1.1	1	0	0	1	1	1	0	Variant	erythrocyte	surface	antigen-1
Pilin_N	PF07790.11	gi|257053820|ref|YP_003131653.1|	-	5e-07	30.6	0.0	9.7e-07	29.6	0.0	1.4	1	0	0	1	1	1	1	Archaeal	Type	IV	pilin,	N-terminal
MS_channel	PF00924.18	gi|257053821|ref|YP_003131654.1|	-	5.3e-35	120.8	0.1	7.2e-35	120.4	0.1	1.2	1	0	0	1	1	1	1	Mechanosensitive	ion	channel
Chromate_transp	PF02417.15	gi|257053821|ref|YP_003131654.1|	-	0.072	13.2	8.5	0.1	12.8	8.5	1.2	1	0	0	1	1	1	0	Chromate	transporter
DUF2583	PF10762.9	gi|257053821|ref|YP_003131654.1|	-	0.23	11.9	1.0	0.51	10.8	1.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2583)
Usp	PF00582.26	gi|257053822|ref|YP_003131655.1|	-	1.3e-09	38.7	1.2	4.1e-08	33.8	1.2	2.0	1	1	0	1	1	1	1	Universal	stress	protein	family
Dodecin	PF07311.12	gi|257053823|ref|YP_003131656.1|	-	2.2e-20	72.7	0.1	2.4e-20	72.6	0.1	1.0	1	0	0	1	1	1	1	Dodecin
DUF2150	PF09920.9	gi|257053824|ref|YP_003131657.1|	-	1.9e-70	236.7	8.8	2.1e-70	236.5	8.8	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2150)
DUF2683	PF10884.8	gi|257053824|ref|YP_003131657.1|	-	0.1	12.9	0.1	0.18	12.1	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2683)
PKD	PF00801.20	gi|257053825|ref|YP_003131658.1|	-	6.7e-15	54.7	38.6	5.6e-12	45.3	4.6	6.8	5	1	0	5	5	5	3	PKD	domain
Big_1	PF02369.16	gi|257053825|ref|YP_003131658.1|	-	3.2e-07	30.2	0.4	3.2e-07	30.2	0.4	10.7	7	3	3	10	10	10	1	Bacterial	Ig-like	domain	(group	1)
REJ	PF02010.15	gi|257053825|ref|YP_003131658.1|	-	1.3e-06	27.6	30.5	0.041	12.7	1.5	4.6	1	1	3	4	4	4	3	REJ	domain
T6SS_HCP	PF05638.12	gi|257053825|ref|YP_003131658.1|	-	0.0051	17.2	0.5	0.14	12.6	0.0	3.4	2	1	1	3	3	3	1	Type	VI	secretion	system	effector,	Hcp
DUF5011	PF16403.5	gi|257053825|ref|YP_003131658.1|	-	0.015	15.4	1.5	0.015	15.4	1.5	3.5	3	0	0	3	3	2	0	Domain	of	unknown	function	(DUF5011)
Y_Y_Y	PF07495.13	gi|257053825|ref|YP_003131658.1|	-	0.022	14.7	3.0	0.36	10.8	0.4	3.8	3	0	0	3	3	3	0	Y_Y_Y	domain
MG4	PF17789.1	gi|257053825|ref|YP_003131658.1|	-	0.035	14.3	11.8	0.054	13.6	0.0	4.1	5	0	0	5	5	4	0	Macroglobulin	domain	MG4
FixG_C	PF11614.8	gi|257053825|ref|YP_003131658.1|	-	0.051	13.8	3.4	18	5.5	0.0	4.4	5	0	0	5	5	5	0	IG-like	fold	at	C-terminal	of	FixG,	putative	oxidoreductase
TcfC	PF16967.5	gi|257053825|ref|YP_003131658.1|	-	0.052	13.0	0.0	0.24	10.9	0.0	2.1	1	0	0	1	1	1	0	E-set	like	domain
PKD_3	PF16820.5	gi|257053825|ref|YP_003131658.1|	-	0.084	12.6	1.3	0.34	10.7	0.5	2.5	2	0	0	2	2	2	0	PKD-like	domain
DUF4625	PF15418.6	gi|257053825|ref|YP_003131658.1|	-	0.089	13.0	3.6	0.17	12.1	0.2	3.2	4	0	0	4	4	4	0	Domain	of	unknown	function	(DUF4625)
Putative_G5P	PF17426.2	gi|257053825|ref|YP_003131658.1|	-	0.13	12.4	0.3	17	5.6	0.0	3.2	4	0	0	4	4	4	0	Putative	Gamma	DNA	binding	protein	G5P
CopC	PF04234.12	gi|257053825|ref|YP_003131658.1|	-	1.4	10.0	11.4	28	5.8	1.6	4.6	3	1	0	3	3	3	0	CopC	domain
ChitinaseA_N	PF08329.10	gi|257053825|ref|YP_003131658.1|	-	2	8.1	7.7	0.74	9.5	0.2	3.8	4	0	0	4	4	4	0	Chitinase	A,	N-terminal	domain
DUF824	PF05688.11	gi|257053825|ref|YP_003131658.1|	-	4.2	7.3	11.6	1	9.3	0.1	5.0	5	0	0	5	5	5	0	Salmonella	repeat	of	unknown	function	(DUF824)
Pilin_N	PF07790.11	gi|257053826|ref|YP_003131659.1|	-	8.4e-14	52.3	3.8	1.3e-13	51.7	3.8	1.3	1	0	0	1	1	1	1	Archaeal	Type	IV	pilin,	N-terminal
DUF2771	PF10969.8	gi|257053826|ref|YP_003131659.1|	-	0.067	13.2	0.3	0.099	12.7	0.3	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2771)
HMG_CoA_synt_N	PF01154.17	gi|257053827|ref|YP_003131660.1|	-	8.5e-27	94.1	0.0	1.2e-26	93.6	0.0	1.2	1	0	0	1	1	1	1	Hydroxymethylglutaryl-coenzyme	A	synthase	N	terminal
HMG_CoA_synt_C	PF08540.10	gi|257053827|ref|YP_003131660.1|	-	7.3e-19	68.4	0.0	1.2e-18	67.8	0.0	1.3	1	0	0	1	1	1	1	Hydroxymethylglutaryl-coenzyme	A	synthase	C	terminal
HTH_3	PF01381.22	gi|257053828|ref|YP_003131661.1|	-	1.1e-06	28.6	0.0	2.3e-06	27.6	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix
HTH_31	PF13560.6	gi|257053828|ref|YP_003131661.1|	-	2.2e-06	27.9	0.5	2.2e-05	24.7	0.1	2.4	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_19	PF12844.7	gi|257053828|ref|YP_003131661.1|	-	0.0043	17.0	0.0	0.0087	16.1	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|257053828|ref|YP_003131661.1|	-	0.0061	16.4	0.0	0.019	14.8	0.0	1.9	2	0	0	2	2	2	1	MarR	family
YdaS_antitoxin	PF15943.5	gi|257053828|ref|YP_003131661.1|	-	0.11	12.4	0.0	0.31	10.9	0.0	1.9	1	0	0	1	1	1	0	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
YdjM	PF04307.14	gi|257053829|ref|YP_003131662.1|	-	0.0019	17.5	9.8	0.0027	17.0	9.8	1.4	1	1	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
ABC2_membrane_3	PF12698.7	gi|257053830|ref|YP_003131663.1|	-	1.2e-36	126.6	2.4	1.4e-36	126.4	2.4	1.0	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.24	gi|257053830|ref|YP_003131663.1|	-	3.5e-27	95.2	13.1	3e-25	88.9	8.4	2.2	2	0	0	2	2	2	2	ABC-2	type	transporter
ABC2_membrane_2	PF12679.7	gi|257053830|ref|YP_003131663.1|	-	6.4e-12	45.3	2.8	1.3e-11	44.3	2.8	1.4	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC_tran	PF00005.27	gi|257053831|ref|YP_003131664.1|	-	4.3e-29	101.8	0.0	7.2e-29	101.0	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|257053831|ref|YP_003131664.1|	-	1.5e-14	54.5	0.0	9e-09	35.6	0.0	2.3	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_15	PF13175.6	gi|257053831|ref|YP_003131664.1|	-	8.7e-07	29.0	0.0	0.015	15.0	0.0	2.2	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_27	PF13514.6	gi|257053831|ref|YP_003131664.1|	-	0.0014	18.2	0.0	0.35	10.4	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_23	PF13476.6	gi|257053831|ref|YP_003131664.1|	-	0.0017	18.9	0.0	0.0028	18.2	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|257053831|ref|YP_003131664.1|	-	0.002	17.8	0.0	0.0042	16.8	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
TraH_2	PF06871.11	gi|257053831|ref|YP_003131664.1|	-	0.004	16.8	0.0	0.0073	16.0	0.0	1.4	1	0	0	1	1	1	1	TraH_2
AAA_16	PF13191.6	gi|257053831|ref|YP_003131664.1|	-	0.0086	16.5	0.1	0.021	15.2	0.1	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_33	PF13671.6	gi|257053831|ref|YP_003131664.1|	-	0.0093	16.1	0.3	0.016	15.4	0.3	1.5	1	1	0	1	1	1	1	AAA	domain
SRP54	PF00448.22	gi|257053831|ref|YP_003131664.1|	-	0.02	14.5	0.1	0.041	13.5	0.1	1.5	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
DUF4162	PF13732.6	gi|257053831|ref|YP_003131664.1|	-	0.024	15.4	0.0	0.065	14.0	0.0	1.8	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4162)
AAA_22	PF13401.6	gi|257053831|ref|YP_003131664.1|	-	0.027	14.7	0.2	0.15	12.4	0.1	2.4	1	1	1	2	2	2	0	AAA	domain
AAA_30	PF13604.6	gi|257053831|ref|YP_003131664.1|	-	0.031	14.0	0.0	0.078	12.7	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
SMC_N	PF02463.19	gi|257053831|ref|YP_003131664.1|	-	0.045	13.2	0.0	0.44	9.9	0.0	2.1	1	1	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
AAA_18	PF13238.6	gi|257053831|ref|YP_003131664.1|	-	0.076	13.6	0.1	1.2	9.7	0.1	2.4	1	1	0	1	1	1	0	AAA	domain
AAA_28	PF13521.6	gi|257053831|ref|YP_003131664.1|	-	0.096	12.9	1.7	0.37	11.0	0.2	2.5	3	0	0	3	3	3	0	AAA	domain
AAA_24	PF13479.6	gi|257053831|ref|YP_003131664.1|	-	0.1	12.3	0.1	0.46	10.2	0.0	2.0	2	1	1	3	3	3	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|257053831|ref|YP_003131664.1|	-	0.15	11.9	0.0	0.28	11.1	0.0	1.4	1	0	0	1	1	1	0	RsgA	GTPase
AAA	PF00004.29	gi|257053831|ref|YP_003131664.1|	-	0.17	12.3	0.3	1.5	9.2	0.3	2.5	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
HrcA_DNA-bdg	PF03444.15	gi|257053832|ref|YP_003131665.1|	-	3.6e-39	132.3	0.1	5.1e-39	131.8	0.1	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
Rrf2	PF02082.20	gi|257053832|ref|YP_003131665.1|	-	5.8e-08	33.0	0.0	1.3e-07	31.9	0.0	1.5	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_11	PF08279.12	gi|257053832|ref|YP_003131665.1|	-	9.5e-08	31.9	0.0	1.4e-07	31.3	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
TrmB	PF01978.19	gi|257053832|ref|YP_003131665.1|	-	0.0064	16.4	0.0	0.011	15.6	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_38	PF13936.6	gi|257053832|ref|YP_003131665.1|	-	0.018	14.8	0.0	0.041	13.7	0.0	1.6	1	1	0	1	1	1	0	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|257053832|ref|YP_003131665.1|	-	0.048	13.2	0.6	0.11	12.1	0.2	1.9	2	1	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
Rio2_N	PF09202.11	gi|257053832|ref|YP_003131665.1|	-	0.071	13.3	0.0	0.11	12.7	0.0	1.2	1	0	0	1	1	1	0	Rio2,	N-terminal
HTH_20	PF12840.7	gi|257053832|ref|YP_003131665.1|	-	0.078	13.1	0.0	0.13	12.4	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
Pyr_redox_2	PF07992.14	gi|257053833|ref|YP_003131666.1|	-	2.3e-38	132.1	0.6	2.8e-38	131.9	0.6	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|257053833|ref|YP_003131666.1|	-	7.7e-08	32.8	0.1	5.6e-06	26.8	0.1	2.4	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
K_oxygenase	PF13434.6	gi|257053833|ref|YP_003131666.1|	-	0.015	14.5	0.1	4.3	6.4	0.0	2.2	2	0	0	2	2	2	0	L-lysine	6-monooxygenase	(NADPH-requiring)
DUF555	PF04475.12	gi|257053835|ref|YP_003131668.1|	-	1.1e-48	163.7	0.2	1.2e-48	163.5	0.2	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF555)
CBS	PF00571.28	gi|257053836|ref|YP_003131669.1|	-	3.2e-23	81.9	1.6	9.8e-12	45.1	0.0	2.4	2	0	0	2	2	2	2	CBS	domain
HTH_31	PF13560.6	gi|257053836|ref|YP_003131669.1|	-	1.5e-11	44.5	1.3	2.8e-11	43.6	1.3	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_3	PF01381.22	gi|257053836|ref|YP_003131669.1|	-	4.2e-11	42.7	0.1	9.4e-11	41.6	0.1	1.6	2	0	0	2	2	2	1	Helix-turn-helix
HTH_19	PF12844.7	gi|257053836|ref|YP_003131669.1|	-	3.5e-06	26.9	0.0	5.7e-06	26.3	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_37	PF13744.6	gi|257053836|ref|YP_003131669.1|	-	0.0005	20.0	0.0	0.00095	19.1	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_25	PF13413.6	gi|257053836|ref|YP_003131669.1|	-	0.00072	19.4	0.1	0.0013	18.6	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_26	PF13443.6	gi|257053836|ref|YP_003131669.1|	-	0.011	16.2	0.0	0.019	15.4	0.0	1.4	1	0	0	1	1	1	0	Cro/C1-type	HTH	DNA-binding	domain
HTH_24	PF13412.6	gi|257053836|ref|YP_003131669.1|	-	0.031	13.8	0.1	1.4	8.5	0.0	2.4	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
Pou	PF00157.17	gi|257053836|ref|YP_003131669.1|	-	0.053	13.5	0.0	0.16	12.0	0.0	1.8	1	1	0	1	1	1	0	Pou	domain	-	N-terminal	to	homeobox	domain
IMS	PF00817.20	gi|257053837|ref|YP_003131670.1|	-	2.7e-41	141.0	0.1	4e-41	140.5	0.1	1.3	1	0	0	1	1	1	1	impB/mucB/samB	family
IMS_C	PF11799.8	gi|257053837|ref|YP_003131670.1|	-	2.5e-12	47.5	0.0	5.1e-12	46.5	0.0	1.4	1	0	0	1	1	1	1	impB/mucB/samB	family	C-terminal	domain
IMS_HHH	PF11798.8	gi|257053837|ref|YP_003131670.1|	-	1.6e-05	25.0	0.0	3.1e-05	24.0	0.0	1.5	1	0	0	1	1	1	1	IMS	family	HHH	motif
HHH_5	PF14520.6	gi|257053837|ref|YP_003131670.1|	-	1.8e-05	25.2	0.2	8.8e-05	23.0	0.1	2.3	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
DNA_pol_lambd_f	PF10391.9	gi|257053837|ref|YP_003131670.1|	-	0.0015	18.3	0.0	0.0049	16.7	0.0	1.9	2	0	0	2	2	2	1	Fingers	domain	of	DNA	polymerase	lambda
Cdd1	PF11731.8	gi|257053837|ref|YP_003131670.1|	-	0.0028	17.8	0.0	0.0061	16.8	0.0	1.5	1	0	0	1	1	1	1	Pathogenicity	locus
Apidaecin	PF00807.17	gi|257053837|ref|YP_003131670.1|	-	0.058	13.5	3.9	0.17	12.0	3.9	1.8	1	0	0	1	1	1	0	Apidaecin
DUF1805	PF08827.11	gi|257053837|ref|YP_003131670.1|	-	0.061	13.7	1.6	0.86	10.0	0.1	3.0	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1805)
DUF4332	PF14229.6	gi|257053837|ref|YP_003131670.1|	-	0.14	12.4	0.0	0.5	10.6	0.0	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4332)
DUF87	PF01935.17	gi|257053839|ref|YP_003131672.1|	-	4.2e-12	46.6	0.7	1.6e-11	44.7	0.7	2.0	1	1	0	1	1	1	1	Helicase	HerA,	central	domain
DUF853	PF05872.12	gi|257053839|ref|YP_003131672.1|	-	6e-05	21.8	0.1	0.0044	15.7	0.0	2.6	2	1	1	3	3	3	1	Bacterial	protein	of	unknown	function	(DUF853)
APS_kinase	PF01583.20	gi|257053839|ref|YP_003131672.1|	-	0.00029	20.8	0.2	0.0097	15.8	0.0	2.4	2	0	0	2	2	2	1	Adenylylsulphate	kinase
Pox_A_type_inc	PF04508.12	gi|257053839|ref|YP_003131672.1|	-	0.00061	19.5	3.6	0.0042	16.9	2.2	2.6	2	0	0	2	2	2	1	Viral	A-type	inclusion	protein	repeat
AAA_16	PF13191.6	gi|257053839|ref|YP_003131672.1|	-	0.00062	20.2	0.7	0.0034	17.8	0.0	2.3	2	0	0	2	2	2	1	AAA	ATPase	domain
DUF4407	PF14362.6	gi|257053839|ref|YP_003131672.1|	-	0.003	17.0	1.8	0.0075	15.7	1.7	1.7	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4407)
AAA	PF00004.29	gi|257053839|ref|YP_003131672.1|	-	0.0035	17.8	0.2	0.06	13.8	0.0	2.7	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF4515	PF14988.6	gi|257053839|ref|YP_003131672.1|	-	0.0039	17.1	0.4	0.0079	16.1	0.4	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4515)
CbiA	PF01656.23	gi|257053839|ref|YP_003131672.1|	-	0.0097	16.0	0.0	0.017	15.2	0.0	1.5	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
DUF724	PF05266.14	gi|257053839|ref|YP_003131672.1|	-	0.028	14.2	0.5	0.051	13.4	0.5	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
TrwB_AAD_bind	PF10412.9	gi|257053839|ref|YP_003131672.1|	-	0.042	12.8	0.0	0.11	11.4	0.0	1.6	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
CorA	PF01544.18	gi|257053839|ref|YP_003131672.1|	-	0.055	12.8	1.1	0.092	12.0	1.1	1.3	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
Spc7	PF08317.11	gi|257053839|ref|YP_003131672.1|	-	0.056	12.3	0.7	0.1	11.4	0.7	1.3	1	0	0	1	1	1	0	Spc7	kinetochore	protein
DUF3450	PF11932.8	gi|257053839|ref|YP_003131672.1|	-	0.078	12.3	0.7	0.2	10.9	0.7	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3450)
V-SNARE	PF05008.15	gi|257053839|ref|YP_003131672.1|	-	0.079	13.4	1.5	9.8	6.6	1.1	2.8	2	0	0	2	2	2	0	Vesicle	transport	v-SNARE	protein	N-terminus
AAA_18	PF13238.6	gi|257053839|ref|YP_003131672.1|	-	0.079	13.5	0.0	0.22	12.0	0.0	1.8	1	0	0	1	1	1	0	AAA	domain
JIP_LZII	PF16471.5	gi|257053839|ref|YP_003131672.1|	-	0.08	13.1	3.7	0.3	11.3	3.2	2.2	3	0	0	3	3	1	0	JNK-interacting	protein	leucine	zipper	II
AAA_33	PF13671.6	gi|257053839|ref|YP_003131672.1|	-	0.084	13.0	0.0	0.24	11.5	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
Spc24	PF08286.11	gi|257053839|ref|YP_003131672.1|	-	0.086	13.1	0.7	0.25	11.6	0.7	1.8	1	0	0	1	1	1	0	Spc24	subunit	of	Ndc80
DUF4763	PF15960.5	gi|257053839|ref|YP_003131672.1|	-	0.095	12.0	1.1	0.18	11.1	0.3	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4763)
EzrA	PF06160.12	gi|257053839|ref|YP_003131672.1|	-	0.12	10.5	1.2	0.21	9.7	1.2	1.3	1	0	0	1	1	1	0	Septation	ring	formation	regulator,	EzrA
UPF0242	PF06785.11	gi|257053839|ref|YP_003131672.1|	-	0.15	12.2	0.4	0.26	11.4	0.4	1.3	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
Med9	PF07544.13	gi|257053839|ref|YP_003131672.1|	-	0.15	12.1	0.9	0.41	10.8	0.9	1.7	1	0	0	1	1	1	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
AAA_13	PF13166.6	gi|257053839|ref|YP_003131672.1|	-	0.16	10.6	0.1	0.25	9.9	0.1	1.3	1	0	0	1	1	1	0	AAA	domain
RPW8	PF05659.11	gi|257053839|ref|YP_003131672.1|	-	0.2	11.3	0.6	0.45	10.2	0.6	1.5	1	0	0	1	1	1	0	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
DUF1664	PF07889.12	gi|257053839|ref|YP_003131672.1|	-	0.22	11.6	0.5	0.44	10.6	0.2	1.6	2	0	0	2	2	1	0	Protein	of	unknown	function	(DUF1664)
AAA_22	PF13401.6	gi|257053839|ref|YP_003131672.1|	-	0.23	11.8	0.8	1.3	9.3	0.1	2.5	2	1	0	2	2	2	0	AAA	domain
DivIC	PF04977.15	gi|257053839|ref|YP_003131672.1|	-	0.44	10.3	2.1	1.4	8.7	2.1	1.8	1	0	0	1	1	1	0	Septum	formation	initiator
Atg14	PF10186.9	gi|257053839|ref|YP_003131672.1|	-	0.47	9.5	1.1	0.7	8.9	1.1	1.2	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
Fez1	PF06818.15	gi|257053839|ref|YP_003131672.1|	-	0.61	10.5	3.2	1.2	9.5	3.2	1.6	1	1	0	1	1	1	0	Fez1
APG6_N	PF17675.1	gi|257053839|ref|YP_003131672.1|	-	0.66	10.5	5.0	2.1	8.9	4.9	1.8	1	1	0	1	1	1	0	Apg6	coiled-coil	region
AAA_23	PF13476.6	gi|257053839|ref|YP_003131672.1|	-	0.76	10.3	2.7	3.1	8.3	0.1	2.4	2	0	0	2	2	2	0	AAA	domain
Pil1	PF13805.6	gi|257053839|ref|YP_003131672.1|	-	0.98	8.9	8.4	0.49	9.8	5.0	2.2	2	1	0	2	2	2	0	Eisosome	component	PIL1
CLZ	PF16526.5	gi|257053839|ref|YP_003131672.1|	-	1.8	9.0	6.9	7	7.1	1.8	3.2	3	0	0	3	3	3	0	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
PKcGMP_CC	PF16808.5	gi|257053839|ref|YP_003131672.1|	-	2.3	8.1	7.1	9.3	6.2	1.0	2.4	2	1	1	3	3	2	0	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
DUF812	PF05667.11	gi|257053839|ref|YP_003131672.1|	-	3.3	6.5	5.5	3.7	6.3	1.8	2.0	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF812)
Pilin_N	PF07790.11	gi|257053840|ref|YP_003131673.1|	-	8.3e-11	42.7	0.4	1.4e-10	42.0	0.4	1.3	1	0	0	1	1	1	1	Archaeal	Type	IV	pilin,	N-terminal
Pro_Al_protease	PF02983.14	gi|257053840|ref|YP_003131673.1|	-	0.009	16.1	0.1	0.019	15.0	0.1	1.6	1	0	0	1	1	1	1	Alpha-lytic	protease	prodomain
Pertactin	PF03212.14	gi|257053840|ref|YP_003131673.1|	-	0.12	12.3	0.0	0.17	11.9	0.0	1.2	1	0	0	1	1	1	0	Pertactin
Lipase_GDSL_3	PF14606.6	gi|257053842|ref|YP_003131675.1|	-	2.1e-29	102.9	0.0	2.9e-29	102.5	0.0	1.1	1	0	0	1	1	1	1	GDSL-like	Lipase/Acylhydrolase	family
Lipase_GDSL_2	PF13472.6	gi|257053842|ref|YP_003131675.1|	-	1.7e-15	57.9	2.0	2.6e-15	57.3	2.0	1.3	1	0	0	1	1	1	1	GDSL-like	Lipase/Acylhydrolase	family
Zn-ribbon_8	PF09723.10	gi|257053843|ref|YP_003131676.1|	-	0.011	15.9	0.9	0.067	13.3	0.1	2.1	2	0	0	2	2	2	0	Zinc	ribbon	domain
DiS_P_DiS	PF06750.13	gi|257053843|ref|YP_003131676.1|	-	0.021	14.9	0.0	0.022	14.9	0.0	1.1	1	0	0	1	1	1	0	Bacterial	Peptidase	A24	N-terminal	domain
DZR	PF12773.7	gi|257053843|ref|YP_003131676.1|	-	0.026	14.5	0.2	0.039	14.0	0.2	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
zinc_ribbon_9	PF14369.6	gi|257053843|ref|YP_003131676.1|	-	0.058	13.7	0.6	0.058	13.7	0.6	1.9	2	1	0	2	2	2	0	zinc-ribbon
TackOD1	PF18551.1	gi|257053843|ref|YP_003131676.1|	-	0.075	12.7	0.2	0.28	10.9	0.2	1.8	1	1	0	1	1	1	0	Thaumarchaeal	output	domain	1
zf-ribbon_3	PF13248.6	gi|257053843|ref|YP_003131676.1|	-	0.08	12.4	0.2	0.08	12.4	0.2	2.0	3	0	0	3	3	3	0	zinc-ribbon	domain
zf-C4_Topoisom	PF01396.19	gi|257053843|ref|YP_003131676.1|	-	0.15	11.8	0.2	0.15	11.8	0.2	1.9	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
zf-IS66	PF13005.7	gi|257053843|ref|YP_003131676.1|	-	0.17	12.3	0.1	0.17	12.3	0.1	2.0	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
IMPDH	PF00478.25	gi|257053845|ref|YP_003131678.1|	-	3.7e-139	463.6	6.6	4.2e-139	463.4	6.6	1.0	1	0	0	1	1	1	1	IMP	dehydrogenase	/	GMP	reductase	domain
CBS	PF00571.28	gi|257053845|ref|YP_003131678.1|	-	9.5e-24	83.6	4.7	6.6e-11	42.5	0.6	2.8	2	0	0	2	2	2	2	CBS	domain
NMO	PF03060.15	gi|257053845|ref|YP_003131678.1|	-	1.4e-12	47.6	0.9	3.2e-06	26.8	0.2	2.3	2	0	0	2	2	2	2	Nitronate	monooxygenase
FMN_dh	PF01070.18	gi|257053845|ref|YP_003131678.1|	-	1.9e-06	27.1	9.3	5.9e-06	25.6	9.3	1.8	1	1	0	1	1	1	1	FMN-dependent	dehydrogenase
ThiG	PF05690.14	gi|257053845|ref|YP_003131678.1|	-	0.00013	21.4	1.3	0.00013	21.4	1.3	2.3	2	0	0	2	2	2	1	Thiazole	biosynthesis	protein	ThiG
DHO_dh	PF01180.21	gi|257053845|ref|YP_003131678.1|	-	0.00035	19.9	1.0	0.0007	18.9	1.0	1.6	1	0	0	1	1	1	1	Dihydroorotate	dehydrogenase
Glu_synthase	PF01645.17	gi|257053845|ref|YP_003131678.1|	-	0.0009	18.5	4.6	0.0012	18.1	3.3	1.8	2	0	0	2	2	2	1	Conserved	region	in	glutamate	synthase
His_biosynth	PF00977.21	gi|257053845|ref|YP_003131678.1|	-	0.002	17.6	2.8	0.0072	15.8	2.7	2.0	1	1	0	1	1	1	1	Histidine	biosynthesis	protein
Dus	PF01207.17	gi|257053845|ref|YP_003131678.1|	-	0.0088	15.2	0.1	0.017	14.2	0.1	1.4	1	0	0	1	1	1	1	Dihydrouridine	synthase	(Dus)
Amino_oxidase	PF01593.24	gi|257053846|ref|YP_003131679.1|	-	1.6e-21	77.1	1.9	8.7e-14	51.6	0.3	2.0	1	1	1	2	2	2	2	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.6	gi|257053846|ref|YP_003131679.1|	-	1.2e-12	47.9	0.6	2.5e-12	46.9	0.3	1.8	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|257053846|ref|YP_003131679.1|	-	9.9e-09	35.2	8.2	6e-06	26.1	2.4	2.3	1	1	0	2	2	2	2	FAD	dependent	oxidoreductase
Prenylcys_lyase	PF07156.14	gi|257053846|ref|YP_003131679.1|	-	0.00091	18.4	0.0	0.0013	17.9	0.0	1.1	1	0	0	1	1	1	1	Prenylcysteine	lyase
NAD_binding_9	PF13454.6	gi|257053846|ref|YP_003131679.1|	-	0.07	13.1	0.6	5.2	7.0	0.2	2.3	2	0	0	2	2	2	0	FAD-NAD(P)-binding
Pyr_redox_2	PF07992.14	gi|257053846|ref|YP_003131679.1|	-	0.088	12.0	2.2	0.15	11.3	2.2	1.5	1	1	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Rossmann-like	PF10727.9	gi|257053846|ref|YP_003131679.1|	-	0.16	11.8	2.0	4.8	7.1	0.2	3.4	4	0	0	4	4	4	0	Rossmann-like	domain
ApbA	PF02558.16	gi|257053846|ref|YP_003131679.1|	-	0.17	11.5	0.0	0.75	9.4	0.1	2.0	2	0	0	2	2	2	0	Ketopantoate	reductase	PanE/ApbA
GIDA	PF01134.22	gi|257053846|ref|YP_003131679.1|	-	0.23	10.5	2.3	0.33	10.0	2.3	1.2	1	0	0	1	1	1	0	Glucose	inhibited	division	protein	A
3HCDH_N	PF02737.18	gi|257053846|ref|YP_003131679.1|	-	0.31	10.9	1.5	0.63	9.9	1.5	1.5	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
DUF2298	PF10060.9	gi|257053847|ref|YP_003131680.1|	-	1.2e-138	463.0	35.8	1.6e-138	462.6	35.8	1.2	1	0	0	1	1	1	1	Uncharacterized	membrane	protein	(DUF2298)
Ribosomal_L44	PF00935.19	gi|257053849|ref|YP_003131682.1|	-	1.5e-23	83.0	1.9	1.9e-23	82.7	1.9	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L44
zf-ribbon_3	PF13248.6	gi|257053849|ref|YP_003131682.1|	-	3.3e-06	26.3	0.7	0.01	15.2	0.0	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|257053849|ref|YP_003131682.1|	-	0.015	15.4	1.4	3.1	8.0	0.2	2.4	2	0	0	2	2	2	0	Zinc	ribbon	domain
zinc_ribbon_10	PF10058.9	gi|257053849|ref|YP_003131682.1|	-	0.023	14.4	1.5	0.69	9.7	0.0	2.2	2	0	0	2	2	2	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
Zn_Tnp_IS1595	PF12760.7	gi|257053849|ref|YP_003131682.1|	-	0.034	14.1	1.6	5.5	7.0	0.1	2.2	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
Zn_ribbon_SprT	PF17283.2	gi|257053849|ref|YP_003131682.1|	-	0.044	13.7	4.9	0.54	10.2	0.4	2.3	2	0	0	2	2	2	0	SprT-like	zinc	ribbon	domain
zinc_ribbon_2	PF13240.6	gi|257053849|ref|YP_003131682.1|	-	0.079	12.7	4.5	2.2	8.1	0.5	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|257053849|ref|YP_003131682.1|	-	0.099	12.2	2.7	5.7	6.5	0.2	2.2	2	0	0	2	2	2	0	TFIIB	zinc-binding
zinc_ribbon_4	PF13717.6	gi|257053849|ref|YP_003131682.1|	-	0.1	12.5	1.6	6	6.9	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Rubredoxin_2	PF18073.1	gi|257053849|ref|YP_003131682.1|	-	0.26	11.0	7.0	0.29	10.9	0.8	2.2	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
zf-LITAF-like	PF10601.9	gi|257053849|ref|YP_003131682.1|	-	0.39	11.0	2.7	1.2	9.5	0.2	2.1	2	0	0	2	2	2	0	LITAF-like	zinc	ribbon	domain
Ribosomal_S27e	PF01667.17	gi|257053850|ref|YP_003131683.1|	-	2.7e-21	75.0	0.7	2.9e-21	74.9	0.7	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S27
DUF3797	PF12677.7	gi|257053850|ref|YP_003131683.1|	-	0.00015	21.6	2.5	0.23	11.4	0.4	2.1	1	1	1	2	2	2	2	Domain	of	unknown	function	(DUF3797)
TF_Zn_Ribbon	PF08271.12	gi|257053850|ref|YP_003131683.1|	-	0.00025	20.5	2.0	0.00048	19.6	2.0	1.5	1	0	0	1	1	1	1	TFIIB	zinc-binding
Zn-ribbon_8	PF09723.10	gi|257053850|ref|YP_003131683.1|	-	0.0015	18.6	0.4	0.0023	18.0	0.4	1.2	1	0	0	1	1	1	1	Zinc	ribbon	domain
zf-RRN7	PF11781.8	gi|257053850|ref|YP_003131683.1|	-	0.014	15.1	3.9	0.2	11.4	0.2	2.2	1	1	1	2	2	2	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
HypA	PF01155.19	gi|257053850|ref|YP_003131683.1|	-	0.021	14.8	0.3	0.025	14.6	0.3	1.2	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-IS66	PF13005.7	gi|257053850|ref|YP_003131683.1|	-	0.04	14.3	2.2	1.2	9.5	0.1	2.1	1	1	1	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
A2L_zn_ribbon	PF08792.10	gi|257053850|ref|YP_003131683.1|	-	0.045	13.5	2.1	6.4	6.6	0.2	2.0	1	1	0	1	1	1	0	A2L	zinc	ribbon	domain
DUF2614	PF11023.8	gi|257053850|ref|YP_003131683.1|	-	0.06	13.5	0.1	0.062	13.4	0.1	1.1	1	0	0	1	1	1	0	Zinc-ribbon	containing	domain
Zn_ribbon_recom	PF13408.6	gi|257053850|ref|YP_003131683.1|	-	0.064	13.8	0.1	1.2	9.7	0.0	2.2	2	0	0	2	2	2	0	Recombinase	zinc	beta	ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|257053850|ref|YP_003131683.1|	-	0.075	13.0	1.7	1.1	9.3	1.9	2.0	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
TFIIS_C	PF01096.18	gi|257053850|ref|YP_003131683.1|	-	0.099	12.5	1.0	2.3	8.2	0.1	2.1	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zf-NADH-PPase	PF09297.11	gi|257053850|ref|YP_003131683.1|	-	0.11	12.1	2.0	2.4	7.9	0.2	2.2	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
zinc_ribbon_4	PF13717.6	gi|257053850|ref|YP_003131683.1|	-	0.43	10.5	3.5	7.3	6.6	0.2	2.4	1	1	2	3	3	3	0	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|257053850|ref|YP_003131683.1|	-	0.48	9.9	4.0	9.4	5.8	4.0	2.2	1	1	0	1	1	1	0	zinc-ribbon	domain
EIF_2_alpha	PF07541.12	gi|257053851|ref|YP_003131684.1|	-	2.3e-27	95.4	0.0	3.9e-27	94.6	0.0	1.4	1	0	0	1	1	1	1	Eukaryotic	translation	initiation	factor	2	alpha	subunit
S1	PF00575.23	gi|257053851|ref|YP_003131684.1|	-	1.2e-12	48.0	1.0	1.2e-12	48.0	1.0	1.7	2	0	0	2	2	2	1	S1	RNA	binding	domain
EXOSC1	PF10447.9	gi|257053851|ref|YP_003131684.1|	-	0.057	14.0	0.3	0.35	11.5	0.2	2.2	1	1	1	2	2	2	0	Exosome	component	EXOSC1/CSL4
Nop10p	PF04135.12	gi|257053852|ref|YP_003131685.1|	-	1.8e-23	82.3	0.4	2e-23	82.2	0.4	1.0	1	0	0	1	1	1	1	Nucleolar	RNA-binding	protein,	Nop10p	family
PAC2	PF09754.9	gi|257053853|ref|YP_003131686.1|	-	7.1e-51	173.2	0.1	8.3e-51	173.0	0.1	1.0	1	0	0	1	1	1	1	PAC2	family
5_3_exonuc	PF01367.20	gi|257053853|ref|YP_003131686.1|	-	0.17	12.5	0.1	7.8	7.2	0.0	3.0	3	0	0	3	3	3	0	5'-3'	exonuclease,	C-terminal	SAM	fold
PALP	PF00291.25	gi|257053854|ref|YP_003131687.1|	-	3.2e-46	158.1	8.3	3.9e-46	157.8	8.3	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
DZR	PF12773.7	gi|257053854|ref|YP_003131687.1|	-	0.0027	17.7	1.0	0.0046	16.9	1.0	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc-ribbons_6	PF07191.12	gi|257053854|ref|YP_003131687.1|	-	0.13	12.3	0.2	0.21	11.6	0.2	1.2	1	0	0	1	1	1	0	zinc-ribbons
HypA	PF01155.19	gi|257053854|ref|YP_003131687.1|	-	0.14	12.1	0.4	0.28	11.2	0.4	1.4	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn-ribbon_8	PF09723.10	gi|257053854|ref|YP_003131687.1|	-	0.23	11.6	2.4	0.43	10.8	2.4	1.5	1	0	0	1	1	1	0	Zinc	ribbon	domain
Prok-RING_1	PF14446.6	gi|257053854|ref|YP_003131687.1|	-	0.57	10.2	4.4	0.96	9.4	4.4	1.3	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
DUF1610	PF07754.11	gi|257053854|ref|YP_003131687.1|	-	1.1	9.2	3.5	2.8	8.0	3.5	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1610)
ThiF	PF00899.21	gi|257053854|ref|YP_003131687.1|	-	2.4	7.4	4.0	3	7.1	0.3	2.4	2	1	0	2	2	2	0	ThiF	family
Amino_oxidase	PF01593.24	gi|257053855|ref|YP_003131688.1|	-	2.7e-42	145.6	0.5	3.3e-42	145.3	0.5	1.1	1	0	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.6	gi|257053855|ref|YP_003131688.1|	-	1.9e-14	53.7	0.3	4.9e-14	52.3	0.3	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|257053855|ref|YP_003131688.1|	-	2.9e-10	40.3	11.8	1.8e-09	37.7	11.8	1.9	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|257053855|ref|YP_003131688.1|	-	8e-07	28.5	3.2	9.5e-07	28.2	0.9	2.0	2	0	0	2	2	2	1	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|257053855|ref|YP_003131688.1|	-	1.8e-06	27.4	0.7	0.00034	19.9	0.2	2.2	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|257053855|ref|YP_003131688.1|	-	2.7e-05	23.1	0.4	0.0011	17.7	0.2	2.1	2	0	0	2	2	2	1	HI0933-like	protein
Thi4	PF01946.17	gi|257053855|ref|YP_003131688.1|	-	4.3e-05	22.9	0.2	8.1e-05	22.0	0.2	1.4	1	0	0	1	1	1	1	Thi4	family
FAD_binding_3	PF01494.19	gi|257053855|ref|YP_003131688.1|	-	0.00071	18.9	1.6	0.00092	18.5	0.4	1.7	2	0	0	2	2	2	1	FAD	binding	domain
FAD_oxidored	PF12831.7	gi|257053855|ref|YP_003131688.1|	-	0.00089	18.7	0.7	0.00089	18.7	0.7	1.8	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
NAD_binding_9	PF13454.6	gi|257053855|ref|YP_003131688.1|	-	0.004	17.2	5.2	0.38	10.7	0.2	3.1	3	0	0	3	3	3	2	FAD-NAD(P)-binding
GIDA	PF01134.22	gi|257053855|ref|YP_003131688.1|	-	0.0061	15.7	0.4	0.01	14.9	0.4	1.3	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
Lycopene_cycl	PF05834.12	gi|257053855|ref|YP_003131688.1|	-	0.0074	15.4	2.7	0.0086	15.2	0.1	2.1	2	1	0	2	2	2	1	Lycopene	cyclase	protein
Pyr_redox	PF00070.27	gi|257053855|ref|YP_003131688.1|	-	0.0077	16.8	0.9	0.55	10.8	0.5	2.3	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
AlaDh_PNT_C	PF01262.21	gi|257053855|ref|YP_003131688.1|	-	0.06	12.6	0.2	0.1	11.8	0.2	1.4	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
MCRA	PF06100.11	gi|257053855|ref|YP_003131688.1|	-	0.071	11.9	0.0	0.098	11.4	0.0	1.2	1	0	0	1	1	1	0	MCRA	family
FMO-like	PF00743.19	gi|257053855|ref|YP_003131688.1|	-	0.2	10.1	0.0	0.26	9.7	0.0	1.1	1	0	0	1	1	1	0	Flavin-binding	monooxygenase-like
Metallophos	PF00149.28	gi|257053857|ref|YP_003131690.1|	-	6.1e-07	30.2	0.7	1.5e-06	28.8	0.7	1.7	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Glyco_trans_1_4	PF13692.6	gi|257053857|ref|YP_003131690.1|	-	0.11	12.9	0.0	1	9.8	0.0	2.2	1	1	2	3	3	3	0	Glycosyl	transferases	group	1
HTH_24	PF13412.6	gi|257053858|ref|YP_003131691.1|	-	4e-11	42.3	0.0	7e-11	41.5	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|257053858|ref|YP_003131691.1|	-	1.6e-10	40.7	0.1	5.4e-10	39.0	0.1	1.9	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.22	gi|257053858|ref|YP_003131691.1|	-	6.1e-09	35.7	0.0	1.4e-08	34.5	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.6	gi|257053858|ref|YP_003131691.1|	-	4.4e-07	30.3	0.2	2.8e-06	27.7	0.0	2.3	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_Crp_2	PF13545.6	gi|257053858|ref|YP_003131691.1|	-	2e-06	27.7	0.1	6.1e-06	26.1	0.0	1.8	2	0	0	2	2	1	1	Crp-like	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|257053858|ref|YP_003131691.1|	-	8.6e-05	22.3	0.0	0.00021	21.0	0.0	1.7	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_20	PF12840.7	gi|257053858|ref|YP_003131691.1|	-	0.00014	21.9	0.0	0.00032	20.7	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|257053858|ref|YP_003131691.1|	-	0.00016	21.5	0.0	0.00025	20.9	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
HTH_45	PF14947.6	gi|257053858|ref|YP_003131691.1|	-	0.00022	21.1	0.0	0.00037	20.4	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_5	PF01022.20	gi|257053858|ref|YP_003131691.1|	-	0.00047	20.0	0.0	0.00074	19.3	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_13	PF11972.8	gi|257053858|ref|YP_003131691.1|	-	0.00083	19.4	0.1	0.0018	18.3	0.1	1.5	1	0	0	1	1	1	1	HTH	DNA	binding	domain
TrmB	PF01978.19	gi|257053858|ref|YP_003131691.1|	-	0.00093	19.0	0.1	0.0017	18.2	0.1	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
SMC_ScpB	PF04079.16	gi|257053858|ref|YP_003131691.1|	-	0.0027	17.3	0.1	0.0051	16.4	0.1	1.4	1	0	0	1	1	1	1	Segregation	and	condensation	complex	subunit	ScpB
DUF4423	PF14394.6	gi|257053858|ref|YP_003131691.1|	-	0.003	17.3	0.0	0.0044	16.7	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4423)
HTH_12	PF08461.10	gi|257053858|ref|YP_003131691.1|	-	0.0032	17.4	0.0	0.011	15.7	0.0	1.9	2	1	0	2	2	1	1	Ribonuclease	R	winged-helix	domain
Rrf2	PF02082.20	gi|257053858|ref|YP_003131691.1|	-	0.0033	17.7	0.0	0.0086	16.4	0.0	1.7	1	0	0	1	1	1	1	Transcriptional	regulator
Fe_dep_repress	PF01325.19	gi|257053858|ref|YP_003131691.1|	-	0.0047	17.1	0.0	0.0088	16.2	0.0	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_23	PF13384.6	gi|257053858|ref|YP_003131691.1|	-	0.0072	16.1	0.0	0.017	14.9	0.0	1.6	1	0	0	1	1	1	1	Homeodomain-like	domain
Mnd1	PF03962.15	gi|257053858|ref|YP_003131691.1|	-	0.0086	16.3	0.0	0.015	15.5	0.0	1.4	1	0	0	1	1	1	1	Mnd1	HTH	domain
GntR	PF00392.21	gi|257053858|ref|YP_003131691.1|	-	0.013	15.1	0.4	0.081	12.6	0.2	2.2	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
Rio2_N	PF09202.11	gi|257053858|ref|YP_003131691.1|	-	0.025	14.8	0.0	0.048	13.9	0.0	1.4	1	0	0	1	1	1	0	Rio2,	N-terminal
TetR_C_7	PF14246.6	gi|257053858|ref|YP_003131691.1|	-	0.027	14.5	0.0	0.058	13.4	0.0	1.5	1	0	0	1	1	1	0	AefR-like	transcriptional	repressor,	C-terminal	domain
DUF4364	PF14277.6	gi|257053858|ref|YP_003131691.1|	-	0.034	13.9	0.0	0.049	13.4	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
HTH_AsnC-type	PF13404.6	gi|257053858|ref|YP_003131691.1|	-	0.053	13.4	0.3	0.21	11.4	0.0	2.2	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
HemN_C	PF06969.16	gi|257053858|ref|YP_003131691.1|	-	0.053	13.6	0.0	0.16	12.0	0.0	1.8	2	0	0	2	2	1	0	HemN	C-terminal	domain
FaeA	PF04703.12	gi|257053858|ref|YP_003131691.1|	-	0.062	13.7	0.2	0.33	11.3	0.0	2.1	2	0	0	2	2	2	0	FaeA-like	protein
LexA_DNA_bind	PF01726.16	gi|257053858|ref|YP_003131691.1|	-	0.063	13.1	0.0	0.14	12.0	0.0	1.6	1	0	0	1	1	1	0	LexA	DNA	binding	domain
Mrr_N	PF14338.6	gi|257053858|ref|YP_003131691.1|	-	0.12	12.5	0.0	0.34	11.1	0.0	1.6	1	1	0	1	1	1	0	Mrr	N-terminal	domain
NMD3	PF04981.13	gi|257053858|ref|YP_003131691.1|	-	0.16	11.4	0.0	0.26	10.7	0.0	1.2	1	0	0	1	1	1	0	NMD3	family
RepL	PF05732.11	gi|257053858|ref|YP_003131691.1|	-	0.18	11.2	0.0	1.3	8.4	0.0	2.0	2	0	0	2	2	2	0	Firmicute	plasmid	replication	protein	(RepL)
HTH_3	PF01381.22	gi|257053858|ref|YP_003131691.1|	-	0.2	11.7	0.1	0.38	10.9	0.1	1.5	1	0	0	1	1	1	0	Helix-turn-helix
Diphthamide_syn	PF01866.17	gi|257053860|ref|YP_003131693.1|	-	2.8e-78	263.4	0.0	3.6e-78	263.1	0.0	1.1	1	0	0	1	1	1	1	Putative	diphthamide	synthesis	protein
GTP-bdg_N	PF13167.6	gi|257053860|ref|YP_003131693.1|	-	0.034	14.8	0.0	1.2	9.8	0.0	2.6	3	0	0	3	3	3	0	GTP-binding	GTPase	N-terminal
DUF677	PF05055.12	gi|257053860|ref|YP_003131693.1|	-	0.29	10.0	0.2	0.44	9.4	0.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF677)
Methyltransf_25	PF13649.6	gi|257053861|ref|YP_003131694.1|	-	1.3e-18	67.5	0.0	2.3e-18	66.7	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|257053861|ref|YP_003131694.1|	-	3.1e-15	56.3	0.0	4.2e-15	55.9	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|257053861|ref|YP_003131694.1|	-	4.6e-15	56.0	0.1	1.2e-14	54.8	0.0	1.7	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|257053861|ref|YP_003131694.1|	-	2.6e-12	47.3	0.0	4.7e-12	46.5	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|257053861|ref|YP_003131694.1|	-	3.2e-08	33.2	0.0	5.6e-08	32.4	0.0	1.4	2	0	0	2	2	2	1	ubiE/COQ5	methyltransferase	family
Methyltransf_23	PF13489.6	gi|257053861|ref|YP_003131694.1|	-	7.5e-08	32.4	0.0	1.5e-07	31.4	0.0	1.5	2	0	0	2	2	2	1	Methyltransferase	domain
MTS	PF05175.14	gi|257053861|ref|YP_003131694.1|	-	1.4e-05	24.7	0.0	2.1e-05	24.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
PrmA	PF06325.13	gi|257053861|ref|YP_003131694.1|	-	0.00027	20.4	0.0	0.00036	20.0	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
CMAS	PF02353.20	gi|257053861|ref|YP_003131694.1|	-	0.00033	20.1	0.0	0.00042	19.7	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
DREV	PF05219.12	gi|257053861|ref|YP_003131694.1|	-	0.00091	18.4	0.0	0.0013	17.9	0.0	1.2	1	0	0	1	1	1	1	DREV	methyltransferase
Methyltransf_32	PF13679.6	gi|257053861|ref|YP_003131694.1|	-	0.0018	18.3	0.0	0.0025	17.8	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_2	PF00891.18	gi|257053861|ref|YP_003131694.1|	-	0.0024	17.2	0.0	0.0034	16.7	0.0	1.2	1	0	0	1	1	1	1	O-methyltransferase	domain
Methyltransf_18	PF12847.7	gi|257053861|ref|YP_003131694.1|	-	0.022	14.7	0.0	0.032	14.1	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
PCMT	PF01135.19	gi|257053861|ref|YP_003131694.1|	-	0.028	14.2	0.0	0.037	13.8	0.0	1.1	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
RrnaAD	PF00398.20	gi|257053861|ref|YP_003131694.1|	-	0.14	11.2	0.0	0.19	10.8	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
tRNA_U5-meth_tr	PF05958.11	gi|257053861|ref|YP_003131694.1|	-	0.2	10.6	0.0	0.27	10.2	0.0	1.1	1	0	0	1	1	1	0	tRNA	(Uracil-5-)-methyltransferase
RNase_P_Rpp14	PF01900.19	gi|257053862|ref|YP_003131695.1|	-	1.1e-20	73.7	0.0	1.5e-20	73.3	0.0	1.2	1	0	0	1	1	1	1	Rpp14/Pop5	family
Proteasome	PF00227.26	gi|257053863|ref|YP_003131696.1|	-	8.2e-59	198.3	0.1	1e-58	198.0	0.1	1.1	1	0	0	1	1	1	1	Proteasome	subunit
Proteasome_A_N	PF10584.9	gi|257053863|ref|YP_003131696.1|	-	8.2e-14	51.0	0.1	1.7e-13	50.0	0.1	1.6	1	0	0	1	1	1	1	Proteasome	subunit	A	N-terminal	signature
DUF4397	PF14344.6	gi|257053864|ref|YP_003131697.1|	-	7.6e-116	381.8	34.0	1e-32	113.5	1.7	6.1	6	0	0	6	6	6	6	Domain	of	unknown	function	(DUF4397)
Hva1_TUDOR	PF11160.8	gi|257053864|ref|YP_003131697.1|	-	1.7e-05	24.9	0.5	5	7.4	0.0	4.3	3	0	0	3	3	3	2	Hypervirulence	associated	proteins	TUDOR	domain
CBM_X2	PF03442.14	gi|257053864|ref|YP_003131697.1|	-	6.3e-05	23.0	1.7	0.92	9.7	0.0	3.7	3	0	0	3	3	3	1	Carbohydrate	binding	domain	X2
Calcipressin	PF04847.12	gi|257053864|ref|YP_003131697.1|	-	0.0024	17.6	0.0	20	4.9	0.0	3.3	3	0	0	3	3	3	1	Calcipressin
LBP_M	PF17385.2	gi|257053864|ref|YP_003131697.1|	-	0.0039	16.8	0.9	4.5	6.7	0.0	3.2	3	0	0	3	3	3	1	Lacto-N-biose	phosphorylase	central	domain
Y_Y_Y	PF07495.13	gi|257053864|ref|YP_003131697.1|	-	0.0067	16.4	0.2	31	4.6	0.0	3.4	3	0	0	3	3	3	0	Y_Y_Y	domain
PhyH	PF05721.13	gi|257053864|ref|YP_003131697.1|	-	0.011	16.0	0.1	37	4.5	0.0	3.2	3	0	0	3	3	3	0	Phytanoyl-CoA	dioxygenase	(PhyH)
DUF915	PF06028.11	gi|257053864|ref|YP_003131697.1|	-	0.014	14.7	0.0	8.9	5.6	0.0	3.1	3	0	0	3	3	3	0	Alpha/beta	hydrolase	of	unknown	function	(DUF915)
DUF3727	PF12527.8	gi|257053864|ref|YP_003131697.1|	-	8.2	6.7	6.3	35	4.7	0.1	3.4	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3727)
HTH_20	PF12840.7	gi|257053865|ref|YP_003131698.1|	-	5.6e-11	42.3	0.0	8.5e-11	41.8	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|257053865|ref|YP_003131698.1|	-	4.6e-10	39.2	0.0	6e-10	38.8	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_45	PF14947.6	gi|257053865|ref|YP_003131698.1|	-	0.00079	19.4	0.0	0.0019	18.2	0.0	1.5	2	0	0	2	2	2	1	Winged	helix-turn-helix
HTH_24	PF13412.6	gi|257053865|ref|YP_003131698.1|	-	0.0026	17.3	0.0	0.0056	16.2	0.0	1.6	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Penicillinase_R	PF03965.16	gi|257053865|ref|YP_003131698.1|	-	0.03	14.7	0.0	0.039	14.3	0.0	1.2	1	0	0	1	1	1	0	Penicillinase	repressor
HTH_12	PF08461.10	gi|257053865|ref|YP_003131698.1|	-	0.098	12.6	0.1	0.18	11.8	0.1	1.5	1	1	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
SBDS	PF01172.18	gi|257053867|ref|YP_003131700.1|	-	6.1e-21	74.3	0.0	8.9e-21	73.8	0.0	1.2	1	0	0	1	1	1	1	Shwachman-Bodian-Diamond	syndrome	(SBDS)	protein
SBDS_C	PF09377.10	gi|257053867|ref|YP_003131700.1|	-	7.6e-16	58.2	0.0	1.2e-15	57.5	0.0	1.3	1	0	0	1	1	1	1	SBDS	protein	C-terminal	domain
AglB_L1	PF18079.1	gi|257053869|ref|YP_003131702.1|	-	4.1e-24	84.7	7.8	1.2e-23	83.2	7.8	1.8	1	0	0	1	1	1	1	Archaeal	glycosylation	protein	B	long	peripheral	domain
STT3	PF02516.14	gi|257053869|ref|YP_003131702.1|	-	2.9e-20	72.7	16.6	6e-20	71.6	16.6	1.5	1	1	0	1	1	1	1	Oligosaccharyl	transferase	STT3	subunit
Vps55	PF04133.14	gi|257053869|ref|YP_003131702.1|	-	0.089	12.8	1.9	0.38	10.7	1.9	2.0	1	0	0	1	1	1	0	Vacuolar	protein	sorting	55
DUF368	PF04018.13	gi|257053870|ref|YP_003131703.1|	-	1.6e-62	211.3	20.6	2e-62	211.0	20.6	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF368)
NCE101	PF11654.8	gi|257053870|ref|YP_003131703.1|	-	8.9	6.1	6.3	2.3	8.0	0.2	3.0	3	0	0	3	3	3	0	Non-classical	export	protein	1
Glycos_transf_1	PF00534.20	gi|257053871|ref|YP_003131704.1|	-	1e-20	74.0	0.0	2.9e-19	69.2	0.0	2.5	2	1	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|257053871|ref|YP_003131704.1|	-	1.3e-18	67.8	0.0	7.2e-17	62.1	0.0	2.2	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|257053871|ref|YP_003131704.1|	-	2.5e-17	63.4	0.2	6.1e-17	62.1	0.2	1.6	1	1	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_1_2	PF13524.6	gi|257053871|ref|YP_003131704.1|	-	2.9e-13	50.0	0.3	5.4e-13	49.2	0.3	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.6	gi|257053871|ref|YP_003131704.1|	-	3.9e-13	50.2	1.7	8.9e-13	49.0	1.1	1.9	2	0	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Frankia_peptide	PF14407.6	gi|257053871|ref|YP_003131704.1|	-	0.066	13.2	1.6	0.2	11.7	1.1	2.0	1	1	1	2	2	2	0	Ribosomally	synthesized	peptide	prototyped	by	Frankia	Franean1_4349.
DUF1961	PF09224.11	gi|257053874|ref|YP_003131707.1|	-	0.091	12.1	0.0	0.11	11.8	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1961)
T2SSE	PF00437.20	gi|257053875|ref|YP_003131708.1|	-	2.8e-49	167.6	0.0	4.1e-49	167.1	0.0	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
HTH_19	PF12844.7	gi|257053875|ref|YP_003131708.1|	-	0.025	14.6	0.3	0.21	11.6	0.1	2.6	2	0	0	2	2	2	0	Helix-turn-helix	domain
AAA_27	PF13514.6	gi|257053875|ref|YP_003131708.1|	-	0.11	12.1	0.0	0.88	9.1	0.1	2.1	1	1	1	2	2	2	0	AAA	domain
T2SSF	PF00482.23	gi|257053876|ref|YP_003131709.1|	-	1.2e-33	115.7	15.3	7.1e-21	74.5	2.1	3.5	4	0	0	4	4	4	2	Type	II	secretion	system	(T2SS),	protein	F
DUF2207	PF09972.9	gi|257053876|ref|YP_003131709.1|	-	0.0066	15.3	4.4	3.7	6.2	0.2	3.8	4	0	0	4	4	4	2	Predicted	membrane	protein	(DUF2207)
DUF485	PF04341.12	gi|257053876|ref|YP_003131709.1|	-	0.16	11.9	0.1	0.16	11.9	0.1	3.4	3	1	1	4	4	4	0	Protein	of	unknown	function,	DUF485
Glyoxalase	PF00903.25	gi|257053877|ref|YP_003131710.1|	-	4.7e-31	107.6	0.1	5.5e-18	65.4	0.0	2.9	2	1	0	2	2	2	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_4	PF13669.6	gi|257053877|ref|YP_003131710.1|	-	3.5e-06	27.2	0.2	0.027	14.7	0.0	3.4	1	1	1	2	2	2	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_6	PF18029.1	gi|257053877|ref|YP_003131710.1|	-	0.00079	20.2	2.1	0.11	13.3	0.1	2.5	2	1	0	2	2	2	2	Glyoxalase-like	domain
Glyoxalase_3	PF13468.6	gi|257053877|ref|YP_003131710.1|	-	0.0012	18.9	4.1	1.8	8.7	0.1	3.5	2	1	2	4	4	4	2	Glyoxalase-like	domain
DoxX	PF07681.12	gi|257053878|ref|YP_003131711.1|	-	1.3e-10	41.7	8.8	1.3e-10	41.7	8.8	1.8	2	0	0	2	2	2	1	DoxX
SURF4	PF02077.15	gi|257053878|ref|YP_003131711.1|	-	0.00059	19.5	1.6	0.0021	17.7	1.6	1.7	1	1	0	1	1	1	1	SURF4	family
DoxX_2	PF13564.6	gi|257053878|ref|YP_003131711.1|	-	0.0071	16.4	12.0	0.016	15.3	11.3	1.8	1	1	1	2	2	2	1	DoxX-like	family
Rab5ip	PF07019.12	gi|257053878|ref|YP_003131711.1|	-	0.12	13.0	4.2	0.083	13.5	0.9	2.1	2	0	0	2	2	2	0	Rab5-interacting	protein	(Rab5ip)
Sporozoite_P67	PF05642.11	gi|257053878|ref|YP_003131711.1|	-	0.31	9.1	0.2	0.33	9.0	0.2	1.0	1	0	0	1	1	1	0	Sporozoite	P67	surface	antigen
HxlR	PF01638.17	gi|257053879|ref|YP_003131712.1|	-	3.4e-21	74.9	0.0	4.1e-21	74.6	0.0	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
MarR_2	PF12802.7	gi|257053879|ref|YP_003131712.1|	-	6.8e-05	22.7	0.1	0.00011	22.1	0.1	1.2	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|257053879|ref|YP_003131712.1|	-	9.8e-05	22.3	0.2	0.00016	21.7	0.2	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_34	PF13601.6	gi|257053879|ref|YP_003131712.1|	-	0.00012	22.1	0.0	0.00016	21.8	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
PadR	PF03551.14	gi|257053879|ref|YP_003131712.1|	-	0.00016	21.6	0.0	0.00024	21.0	0.0	1.3	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_27	PF13463.6	gi|257053879|ref|YP_003131712.1|	-	0.00027	21.4	0.1	0.00039	20.8	0.1	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_5	PF01022.20	gi|257053879|ref|YP_003131712.1|	-	0.00039	20.2	0.0	0.00057	19.7	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.22	gi|257053879|ref|YP_003131712.1|	-	0.00066	19.6	0.0	0.00092	19.1	0.0	1.3	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|257053879|ref|YP_003131712.1|	-	0.0061	16.4	0.0	0.0092	15.9	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_Crp_2	PF13545.6	gi|257053879|ref|YP_003131712.1|	-	0.015	15.3	0.1	0.024	14.6	0.1	1.3	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_45	PF14947.6	gi|257053879|ref|YP_003131712.1|	-	0.023	14.7	0.0	0.028	14.4	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix
Trp_repressor	PF01371.19	gi|257053879|ref|YP_003131712.1|	-	0.026	14.7	0.0	0.039	14.1	0.0	1.3	1	0	0	1	1	1	0	Trp	repressor	protein
DUF2250	PF10007.9	gi|257053879|ref|YP_003131712.1|	-	0.028	14.5	0.2	2.7	8.2	0.0	2.2	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
Replic_Relax	PF13814.6	gi|257053879|ref|YP_003131712.1|	-	0.034	14.2	0.0	0.043	13.9	0.0	1.1	1	0	0	1	1	1	0	Replication-relaxation
DUF4364	PF14277.6	gi|257053879|ref|YP_003131712.1|	-	0.035	13.8	0.0	0.053	13.3	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
DUF505	PF04458.12	gi|257053879|ref|YP_003131712.1|	-	0.047	12.1	0.0	0.057	11.8	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF505)
DUF1495	PF07381.11	gi|257053879|ref|YP_003131712.1|	-	0.092	12.6	0.0	0.37	10.6	0.0	1.8	1	1	1	2	2	2	0	Winged	helix	DNA-binding	domain	(DUF1495)
HTH_36	PF13730.6	gi|257053879|ref|YP_003131712.1|	-	0.11	12.4	0.0	0.2	11.7	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
GntR	PF00392.21	gi|257053879|ref|YP_003131712.1|	-	0.12	12.0	0.2	0.2	11.3	0.2	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_IclR	PF09339.10	gi|257053879|ref|YP_003131712.1|	-	0.14	12.0	0.1	0.23	11.3	0.1	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
DEAD_assoc	PF08494.11	gi|257053880|ref|YP_003131713.1|	-	4.5e-53	179.9	0.5	8.8e-53	178.9	0.5	1.5	1	0	0	1	1	1	1	DEAD/H	associated
DEAD	PF00270.29	gi|257053880|ref|YP_003131713.1|	-	1.8e-31	109.3	0.0	8.8e-30	103.8	0.0	2.3	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|257053880|ref|YP_003131713.1|	-	5.1e-18	65.4	0.0	1.2e-16	61.0	0.0	2.4	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|257053880|ref|YP_003131713.1|	-	4.3e-09	36.6	0.0	5.1e-08	33.1	0.0	2.1	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
AAA_19	PF13245.6	gi|257053880|ref|YP_003131713.1|	-	0.013	15.8	0.1	0.048	14.0	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
AAA_30	PF13604.6	gi|257053880|ref|YP_003131713.1|	-	0.095	12.4	0.0	0.31	10.7	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
YdjM	PF04307.14	gi|257053881|ref|YP_003131714.1|	-	3.9e-10	39.3	23.3	3.1e-09	36.4	23.3	2.6	1	1	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
DUF2238	PF09997.9	gi|257053882|ref|YP_003131715.1|	-	8.4e-06	25.6	1.0	1.8e-05	24.6	1.0	1.7	1	1	0	1	1	1	1	Predicted	membrane	protein	(DUF2238)
DUF4149	PF13664.6	gi|257053883|ref|YP_003131716.1|	-	4.2	7.7	11.7	70	3.8	6.9	3.3	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4149)
FG-GAP_2	PF14312.6	gi|257053884|ref|YP_003131717.1|	-	2.7e-44	149.2	44.1	7e-13	48.6	3.1	7.6	7	0	0	7	7	7	7	FG-GAP	repeat
DUF1513	PF07433.11	gi|257053884|ref|YP_003131717.1|	-	9.9e-05	21.6	3.7	0.28	10.2	0.1	4.1	1	1	4	5	5	5	2	Protein	of	unknown	function	(DUF1513)
BNR_2	PF13088.6	gi|257053884|ref|YP_003131717.1|	-	0.065	12.5	0.3	1.2	8.4	0.0	2.7	2	1	1	3	3	3	0	BNR	repeat-like	domain
AnfO_nitrog	PF09582.10	gi|257053884|ref|YP_003131717.1|	-	0.074	12.4	0.0	24	4.2	0.0	3.5	4	0	0	4	4	4	0	Iron	only	nitrogenase	protein	AnfO	(AnfO_nitrog)
Kelch_3	PF13415.6	gi|257053884|ref|YP_003131717.1|	-	0.2	12.0	6.5	71	3.9	0.5	4.9	4	0	0	4	4	4	0	Galactose	oxidase,	central	domain
PD40	PF07676.12	gi|257053884|ref|YP_003131717.1|	-	1.5	8.8	5.4	30	4.7	0.2	4.5	6	0	0	6	6	6	0	WD40-like	Beta	Propeller	Repeat
Pterin_4a	PF01329.19	gi|257053885|ref|YP_003131718.1|	-	6.7e-22	77.5	0.0	7.9e-22	77.2	0.0	1.1	1	0	0	1	1	1	1	Pterin	4	alpha	carbinolamine	dehydratase
GlutR_N	PF05201.15	gi|257053886|ref|YP_003131719.1|	-	2.3e-33	115.0	0.0	4.6e-33	114.0	0.0	1.5	1	0	0	1	1	1	1	Glutamyl-tRNAGlu	reductase,	N-terminal	domain
Shikimate_DH	PF01488.20	gi|257053886|ref|YP_003131719.1|	-	4.2e-26	91.7	2.1	4.7e-26	91.5	0.3	1.9	2	0	0	2	2	2	1	Shikimate	/	quinate	5-dehydrogenase
GlutR_dimer	PF00745.20	gi|257053886|ref|YP_003131719.1|	-	2e-22	79.5	0.9	4.3e-22	78.4	0.9	1.6	1	0	0	1	1	1	1	Glutamyl-tRNAGlu	reductase,	dimerisation	domain
Glu_dehyd_C	PF16912.5	gi|257053886|ref|YP_003131719.1|	-	1.6e-07	31.0	2.4	3.6e-07	29.9	2.4	1.6	1	1	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
OCD_Mu_crystall	PF02423.15	gi|257053886|ref|YP_003131719.1|	-	0.00036	19.6	1.1	0.00065	18.7	1.1	1.3	1	0	0	1	1	1	1	Ornithine	cyclodeaminase/mu-crystallin	family
2-Hacid_dh_C	PF02826.19	gi|257053886|ref|YP_003131719.1|	-	0.002	17.5	0.1	0.0039	16.6	0.1	1.6	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Sacchrp_dh_NADP	PF03435.18	gi|257053886|ref|YP_003131719.1|	-	0.0043	17.3	0.9	0.0043	17.3	0.9	2.9	3	0	0	3	3	3	1	Saccharopine	dehydrogenase	NADP	binding	domain
THF_DHG_CYH_C	PF02882.19	gi|257053886|ref|YP_003131719.1|	-	0.022	14.1	3.1	0.18	11.1	3.1	2.2	1	1	0	1	1	1	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
NAD_binding_7	PF13241.6	gi|257053886|ref|YP_003131719.1|	-	0.12	12.8	0.7	0.38	11.2	0.7	1.8	1	0	0	1	1	1	0	Putative	NAD(P)-binding
DUF4410	PF14366.6	gi|257053886|ref|YP_003131719.1|	-	0.33	10.8	3.0	1.2	9.0	1.1	2.7	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4410)
CSD	PF00313.22	gi|257053888|ref|YP_003131721.1|	-	1.4e-20	72.9	0.1	1.6e-20	72.7	0.1	1.0	1	0	0	1	1	1	1	'Cold-shock'	DNA-binding	domain
Rho_RNA_bind	PF07497.12	gi|257053888|ref|YP_003131721.1|	-	0.008	16.0	0.0	0.009	15.9	0.0	1.1	1	0	0	1	1	1	1	Rho	termination	factor,	RNA-binding	domain
S1-like	PF14444.6	gi|257053888|ref|YP_003131721.1|	-	0.017	15.0	1.6	0.025	14.5	1.6	1.4	1	1	0	1	1	1	0	S1-like
OB_RNB	PF08206.11	gi|257053888|ref|YP_003131721.1|	-	0.018	14.7	2.4	0.026	14.2	2.4	1.4	1	0	0	1	1	1	0	Ribonuclease	B	OB	domain
CusF_Ec	PF11604.8	gi|257053888|ref|YP_003131721.1|	-	0.071	13.1	0.1	0.13	12.3	0.0	1.5	1	1	1	2	2	2	0	Copper	binding	periplasmic	protein	CusF
CSD	PF00313.22	gi|257053889|ref|YP_003131722.1|	-	9e-21	73.5	0.1	9.9e-21	73.4	0.1	1.0	1	0	0	1	1	1	1	'Cold-shock'	DNA-binding	domain
Rho_RNA_bind	PF07497.12	gi|257053889|ref|YP_003131722.1|	-	0.0074	16.1	0.0	0.0084	16.0	0.0	1.1	1	0	0	1	1	1	1	Rho	termination	factor,	RNA-binding	domain
S1-like	PF14444.6	gi|257053889|ref|YP_003131722.1|	-	0.01	15.7	1.1	0.015	15.2	1.1	1.4	1	1	0	1	1	1	0	S1-like
OB_RNB	PF08206.11	gi|257053889|ref|YP_003131722.1|	-	0.023	14.3	1.8	0.035	13.8	1.8	1.4	1	0	0	1	1	1	0	Ribonuclease	B	OB	domain
Prenyltransf	PF01255.19	gi|257053890|ref|YP_003131723.1|	-	4.6e-67	225.8	0.0	5.7e-67	225.5	0.0	1.1	1	0	0	1	1	1	1	Putative	undecaprenyl	diphosphate	synthase
Aldo_ket_red	PF00248.21	gi|257053891|ref|YP_003131724.1|	-	4.3e-43	147.6	0.0	1.1e-41	143.0	0.0	2.0	1	1	0	1	1	1	1	Aldo/keto	reductase	family
Fer4_17	PF13534.6	gi|257053891|ref|YP_003131724.1|	-	2.8e-10	40.6	6.2	5.3e-10	39.7	6.2	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|257053891|ref|YP_003131724.1|	-	9.2e-10	38.5	6.6	1.7e-09	37.7	6.6	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|257053891|ref|YP_003131724.1|	-	1.7e-06	28.4	5.1	3.2e-06	27.5	5.1	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|257053891|ref|YP_003131724.1|	-	3.7e-05	23.8	5.6	0.031	14.4	0.8	2.4	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|257053891|ref|YP_003131724.1|	-	5.1e-05	22.9	11.9	0.00019	21.1	4.1	2.6	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|257053891|ref|YP_003131724.1|	-	0.0003	21.0	5.7	0.14	12.4	0.2	2.3	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|257053891|ref|YP_003131724.1|	-	0.00062	19.8	11.6	0.0049	17.0	2.5	2.3	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|257053891|ref|YP_003131724.1|	-	0.0016	18.4	3.5	0.0016	18.4	3.5	2.5	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|257053891|ref|YP_003131724.1|	-	0.0046	17.3	4.6	0.0046	17.3	4.6	2.7	3	0	0	3	3	2	1	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|257053891|ref|YP_003131724.1|	-	0.0049	17.4	12.1	0.024	15.2	12.2	2.0	1	1	1	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_22	PF17179.4	gi|257053891|ref|YP_003131724.1|	-	0.0091	16.8	2.6	0.1	13.4	0.1	2.3	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|257053891|ref|YP_003131724.1|	-	0.016	15.3	4.2	0.016	15.3	4.2	2.6	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|257053891|ref|YP_003131724.1|	-	0.042	14.8	10.6	0.68	10.9	3.9	2.3	1	1	2	3	3	3	0	4Fe-4S	double	cluster	binding	domain
Fer4_20	PF14691.6	gi|257053891|ref|YP_003131724.1|	-	0.067	13.0	0.7	0.067	13.0	0.7	2.2	1	1	1	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
FAD_binding_2	PF00890.24	gi|257053893|ref|YP_003131726.1|	-	2.2e-124	415.8	6.8	3.6e-124	415.0	6.8	1.3	1	0	0	1	1	1	1	FAD	binding	domain
Succ_DH_flav_C	PF02910.20	gi|257053893|ref|YP_003131726.1|	-	1.1e-35	122.4	0.3	1.9e-35	121.6	0.3	1.4	1	0	0	1	1	1	1	Fumarate	reductase	flavoprotein	C-term
Pyr_redox_2	PF07992.14	gi|257053893|ref|YP_003131726.1|	-	6e-09	35.6	4.9	0.00041	19.7	4.1	2.9	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.24	gi|257053893|ref|YP_003131726.1|	-	1.4e-05	24.9	7.4	0.00038	20.1	7.1	2.9	2	1	0	2	2	2	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|257053893|ref|YP_003131726.1|	-	8.2e-05	21.5	3.3	8.8e-05	21.4	0.1	2.4	3	0	0	3	3	3	1	HI0933-like	protein
GIDA	PF01134.22	gi|257053893|ref|YP_003131726.1|	-	0.00013	21.2	5.4	0.00031	19.9	4.1	2.0	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
FAD_oxidored	PF12831.7	gi|257053893|ref|YP_003131726.1|	-	0.00027	20.4	3.6	0.00027	20.4	3.6	1.8	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
Thi4	PF01946.17	gi|257053893|ref|YP_003131726.1|	-	0.0061	15.8	2.9	0.032	13.5	0.4	2.8	3	0	0	3	3	3	1	Thi4	family
FAD_binding_3	PF01494.19	gi|257053893|ref|YP_003131726.1|	-	0.013	14.8	1.1	0.013	14.8	1.1	1.6	2	0	0	2	2	2	0	FAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|257053893|ref|YP_003131726.1|	-	0.017	14.4	0.2	0.036	13.3	0.2	1.5	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Pyr_redox_3	PF13738.6	gi|257053893|ref|YP_003131726.1|	-	0.04	13.2	3.3	0.043	13.0	0.3	2.3	3	0	0	3	3	3	0	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|257053893|ref|YP_003131726.1|	-	0.085	13.4	1.1	0.22	12.1	0.6	1.9	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|257053893|ref|YP_003131726.1|	-	0.17	12.1	0.8	0.88	9.9	0.8	2.3	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
Fer2_3	PF13085.6	gi|257053894|ref|YP_003131727.1|	-	1.9e-33	114.7	0.2	3.7e-32	110.6	0.0	2.2	2	0	0	2	2	2	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer4_8	PF13183.6	gi|257053894|ref|YP_003131727.1|	-	3.7e-12	46.5	3.5	3.7e-12	46.5	3.5	1.8	2	0	0	2	2	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|257053894|ref|YP_003131727.1|	-	3.9e-08	33.3	3.8	8.9e-08	32.1	3.8	1.7	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|257053894|ref|YP_003131727.1|	-	5.2e-07	30.1	2.4	1.9e-06	28.3	2.2	2.1	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|257053894|ref|YP_003131727.1|	-	7e-06	26.5	3.3	1.7e-05	25.3	3.3	1.7	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|257053894|ref|YP_003131727.1|	-	0.0011	19.1	20.7	0.0032	17.6	9.6	2.5	2	1	1	3	3	2	2	4Fe-4S	dicluster	domain
Fer4_20	PF14691.6	gi|257053894|ref|YP_003131727.1|	-	0.004	16.9	7.7	0.48	10.2	1.8	2.4	1	1	1	2	2	2	2	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_21	PF14697.6	gi|257053894|ref|YP_003131727.1|	-	0.0053	16.8	2.8	0.032	14.4	0.5	2.4	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|257053894|ref|YP_003131727.1|	-	0.0073	16.1	9.2	0.021	14.6	2.7	2.5	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|257053894|ref|YP_003131727.1|	-	0.036	14.6	10.6	0.054	14.0	4.1	2.6	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|257053894|ref|YP_003131727.1|	-	0.04	14.0	2.6	0.04	14.0	2.6	2.7	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|257053894|ref|YP_003131727.1|	-	0.052	14.5	8.0	0.052	14.5	8.0	2.7	2	1	2	4	4	3	0	4Fe-4S	double	cluster	binding	domain
Fer4_6	PF12837.7	gi|257053894|ref|YP_003131727.1|	-	0.17	12.0	9.1	0.2	11.8	3.5	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_3	PF12798.7	gi|257053894|ref|YP_003131727.1|	-	0.27	12.2	11.7	2.2	9.4	0.4	2.6	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|257053894|ref|YP_003131727.1|	-	0.8	9.9	8.1	8	6.7	2.6	2.5	1	1	0	2	2	2	0	4Fe-4S	dicluster	domain
TCO89	PF10452.9	gi|257053894|ref|YP_003131727.1|	-	2.9	6.7	4.2	4	6.3	4.2	1.1	1	0	0	1	1	1	0	TORC1	subunit	TCO89
Sdh_cyt	PF01127.22	gi|257053895|ref|YP_003131728.1|	-	2.5e-11	43.6	3.5	3.4e-11	43.2	3.5	1.2	1	0	0	1	1	1	1	Succinate	dehydrogenase/Fumarate	reductase	transmembrane	subunit
Sdh_cyt	PF01127.22	gi|257053896|ref|YP_003131729.1|	-	2.3e-24	85.8	3.2	2.5e-24	85.6	3.2	1.0	1	0	0	1	1	1	1	Succinate	dehydrogenase/Fumarate	reductase	transmembrane	subunit
Tox-ODYAM1	PF15642.6	gi|257053896|ref|YP_003131729.1|	-	0.22	10.5	0.1	0.29	10.1	0.1	1.2	1	0	0	1	1	1	0	Toxin	in	Odyssella	and	Amoebophilus
Glyco_hydro_3_C	PF01915.22	gi|257053897|ref|YP_003131730.1|	-	3.4e-57	193.7	0.0	7.8e-57	192.5	0.0	1.6	1	1	0	1	1	1	1	Glycosyl	hydrolase	family	3	C-terminal	domain
Glyco_hydro_3	PF00933.21	gi|257053897|ref|YP_003131730.1|	-	3.7e-50	171.1	0.0	5.3e-48	164.0	0.0	2.2	2	0	0	2	2	2	2	Glycosyl	hydrolase	family	3	N	terminal	domain
Fn3-like	PF14310.6	gi|257053897|ref|YP_003131730.1|	-	1.6e-24	85.8	0.1	3.7e-24	84.6	0.1	1.7	1	0	0	1	1	1	1	Fibronectin	type	III-like	domain
TBP-binding	PF09247.11	gi|257053897|ref|YP_003131730.1|	-	0.14	12.4	0.1	1.6	9.1	0.0	2.3	2	0	0	2	2	2	0	TATA	box-binding	protein	binding
MS_channel	PF00924.18	gi|257053898|ref|YP_003131731.1|	-	2.2e-44	151.5	0.0	3e-44	151.1	0.0	1.2	1	0	0	1	1	1	1	Mechanosensitive	ion	channel
ParE_toxin	PF05016.15	gi|257053899|ref|YP_003131732.1|	-	0.0035	17.9	0.1	0.0056	17.3	0.1	1.3	1	1	0	1	1	1	1	ParE	toxin	of	type	II	toxin-antitoxin	system,	parDE
RHH_1	PF01402.21	gi|257053900|ref|YP_003131733.1|	-	3e-06	27.0	0.2	4.9e-06	26.3	0.2	1.3	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
HicB_lk_antitox	PF15919.5	gi|257053900|ref|YP_003131733.1|	-	0.047	13.8	0.0	0.069	13.3	0.0	1.2	1	0	0	1	1	1	0	HicB_like	antitoxin	of	bacterial	toxin-antitoxin	system
CopG_antitoxin	PF12441.8	gi|257053900|ref|YP_003131733.1|	-	0.18	12.4	0.0	0.32	11.6	0.0	1.4	1	0	0	1	1	1	0	CopG	antitoxin	of	type	II	toxin-antitoxin	system
DUF309	PF03745.14	gi|257053901|ref|YP_003131734.1|	-	1.7e-14	53.3	0.1	2.5e-14	52.7	0.1	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF309)
Glyco_hydro_2_C	PF02836.17	gi|257053903|ref|YP_003131736.1|	-	2.7e-27	95.7	0.0	1.6e-26	93.2	0.0	1.9	1	1	0	1	1	1	1	Glycosyl	hydrolases	family	2,	TIM	barrel	domain
Glyco_hydro_2_N	PF02837.18	gi|257053903|ref|YP_003131736.1|	-	1.8e-14	54.0	0.0	9.2e-14	51.7	0.0	1.9	2	0	0	2	2	2	1	Glycosyl	hydrolases	family	2,	sugar	binding	domain
Glyco_hydro_2	PF00703.21	gi|257053903|ref|YP_003131736.1|	-	0.00026	21.6	0.0	0.00061	20.4	0.0	1.7	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	2
CBS	PF00571.28	gi|257053904|ref|YP_003131737.1|	-	2.2e-23	82.4	7.8	5.7e-13	49.1	1.5	2.8	3	0	0	3	3	3	2	CBS	domain
ParBc	PF02195.18	gi|257053904|ref|YP_003131737.1|	-	5.4e-10	39.4	0.1	2.5e-09	37.3	0.1	2.0	1	1	0	1	1	1	1	ParB-like	nuclease	domain
ParBc_2	PF08857.11	gi|257053904|ref|YP_003131737.1|	-	0.0012	19.0	0.0	0.0075	16.4	0.0	2.0	1	1	0	1	1	1	1	Putative	ParB-like	nuclease
DUF1015	PF06245.11	gi|257053904|ref|YP_003131737.1|	-	0.026	13.4	0.0	0.032	13.1	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1015)
DHHA1	PF02272.19	gi|257053905|ref|YP_003131738.1|	-	1e-13	51.9	0.1	3.6e-13	50.1	0.1	1.9	2	0	0	2	2	2	1	DHHA1	domain
DHH	PF01368.20	gi|257053905|ref|YP_003131738.1|	-	1.7e-12	47.4	0.1	3.5e-12	46.4	0.1	1.6	1	0	0	1	1	1	1	DHH	family
TrkA_N	PF02254.18	gi|257053905|ref|YP_003131738.1|	-	1.3e-05	25.5	0.3	2.7e-05	24.4	0.3	1.6	1	0	0	1	1	1	1	TrkA-N	domain
NAD_binding_10	PF13460.6	gi|257053905|ref|YP_003131738.1|	-	0.049	13.5	3.2	0.05	13.5	1.2	2.0	2	0	0	2	2	2	0	NAD(P)H-binding
AMP-binding	PF00501.28	gi|257053906|ref|YP_003131739.1|	-	2.3e-83	280.2	0.1	2.7e-83	279.9	0.1	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|257053906|ref|YP_003131739.1|	-	9.7e-21	74.5	2.0	2e-20	73.6	2.0	1.6	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
ACAS_N	PF16177.5	gi|257053906|ref|YP_003131739.1|	-	3.6e-13	49.2	0.5	1.1e-12	47.6	0.5	1.9	1	0	0	1	1	1	1	Acetyl-coenzyme	A	synthetase	N-terminus
HTH_24	PF13412.6	gi|257053907|ref|YP_003131740.1|	-	6.2e-14	51.3	0.0	8.9e-14	50.8	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
AsnC_trans_reg	PF01037.21	gi|257053907|ref|YP_003131740.1|	-	2.8e-11	43.2	0.0	4.5e-11	42.6	0.0	1.3	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HTH_AsnC-type	PF13404.6	gi|257053907|ref|YP_003131740.1|	-	3.1e-10	39.7	0.0	6.7e-10	38.6	0.0	1.6	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.12	gi|257053907|ref|YP_003131740.1|	-	5.8e-08	32.6	0.0	1.5e-07	31.2	0.0	1.8	2	0	0	2	2	1	1	HTH	domain
HTH_IclR	PF09339.10	gi|257053907|ref|YP_003131740.1|	-	1.9e-07	30.7	0.0	3.5e-07	29.9	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
FaeA	PF04703.12	gi|257053907|ref|YP_003131740.1|	-	3.8e-06	27.2	0.0	5.8e-06	26.6	0.0	1.2	1	0	0	1	1	1	1	FaeA-like	protein
HTH_23	PF13384.6	gi|257053907|ref|YP_003131740.1|	-	5.6e-06	26.0	0.0	1.1e-05	25.1	0.0	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_DeoR	PF08220.12	gi|257053907|ref|YP_003131740.1|	-	1.6e-05	24.5	0.0	2.7e-05	23.8	0.0	1.3	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_36	PF13730.6	gi|257053907|ref|YP_003131740.1|	-	1.9e-05	24.5	0.0	3.7e-05	23.6	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|257053907|ref|YP_003131740.1|	-	3.4e-05	23.6	0.0	5.7e-05	22.9	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
Fe_dep_repress	PF01325.19	gi|257053907|ref|YP_003131740.1|	-	3.5e-05	23.9	0.3	0.00011	22.3	0.2	1.9	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_29	PF13551.6	gi|257053907|ref|YP_003131740.1|	-	4.1e-05	23.5	0.0	6.6e-05	22.9	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn	helix
GntR	PF00392.21	gi|257053907|ref|YP_003131740.1|	-	0.0001	21.9	0.1	0.00018	21.1	0.1	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_20	PF12840.7	gi|257053907|ref|YP_003131740.1|	-	0.00013	22.0	0.0	0.00022	21.2	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|257053907|ref|YP_003131740.1|	-	0.00017	21.4	0.0	0.00036	20.3	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_Crp_2	PF13545.6	gi|257053907|ref|YP_003131740.1|	-	0.00036	20.5	0.0	0.001	19.0	0.0	1.8	2	0	0	2	2	1	1	Crp-like	helix-turn-helix	domain
Sigma70_r4_2	PF08281.12	gi|257053907|ref|YP_003131740.1|	-	0.00058	19.5	0.1	0.0015	18.2	0.0	1.6	2	0	0	2	2	1	1	Sigma-70,	region	4
MarR	PF01047.22	gi|257053907|ref|YP_003131740.1|	-	0.00089	19.1	0.0	0.0014	18.5	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_28	PF13518.6	gi|257053907|ref|YP_003131740.1|	-	0.0011	19.1	0.0	0.0024	17.9	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
Rrf2	PF02082.20	gi|257053907|ref|YP_003131740.1|	-	0.0012	19.2	0.0	0.002	18.4	0.0	1.4	1	0	0	1	1	1	1	Transcriptional	regulator
TrmB	PF01978.19	gi|257053907|ref|YP_003131740.1|	-	0.0016	18.3	0.1	0.003	17.4	0.1	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_10	PF04967.12	gi|257053907|ref|YP_003131740.1|	-	0.0021	17.8	0.0	0.0041	16.9	0.0	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
LacI	PF00356.21	gi|257053907|ref|YP_003131740.1|	-	0.011	15.5	0.5	0.48	10.3	0.0	2.8	3	0	0	3	3	3	0	Bacterial	regulatory	proteins,	lacI	family
HTH_Tnp_ISL3	PF13542.6	gi|257053907|ref|YP_003131740.1|	-	0.015	14.7	0.0	0.052	13.0	0.0	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	transposase	family	ISL3
RPA_C	PF08784.11	gi|257053907|ref|YP_003131740.1|	-	0.015	15.9	0.0	0.041	14.5	0.0	1.6	2	0	0	2	2	1	0	Replication	protein	A	C	terminal
HTH_6	PF01418.17	gi|257053907|ref|YP_003131740.1|	-	0.019	14.9	0.0	0.032	14.2	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain,	rpiR	family
HTH_47	PF16221.5	gi|257053907|ref|YP_003131740.1|	-	0.047	13.3	0.1	0.11	12.1	0.0	1.7	2	0	0	2	2	2	0	winged	helix-turn-helix
Sigma70_r4	PF04545.16	gi|257053907|ref|YP_003131740.1|	-	0.047	13.2	0.0	0.097	12.2	0.0	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_38	PF13936.6	gi|257053907|ref|YP_003131740.1|	-	0.055	13.2	0.0	0.15	11.8	0.0	1.8	2	0	0	2	2	1	0	Helix-turn-helix	domain
HTH_Mga	PF08280.11	gi|257053907|ref|YP_003131740.1|	-	0.056	13.5	0.0	0.088	12.9	0.0	1.2	1	0	0	1	1	1	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
TFIIE_alpha	PF02002.17	gi|257053907|ref|YP_003131740.1|	-	0.057	13.3	0.0	0.087	12.7	0.0	1.2	1	0	0	1	1	1	0	TFIIE	alpha	subunit
DUF1670	PF07900.11	gi|257053907|ref|YP_003131740.1|	-	0.086	12.2	0.0	0.095	12.0	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1670)
HTH_1	PF00126.27	gi|257053907|ref|YP_003131740.1|	-	0.096	12.7	0.0	0.17	11.8	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
MerR	PF00376.23	gi|257053907|ref|YP_003131740.1|	-	0.1	12.3	0.0	0.22	11.3	0.0	1.5	1	0	0	1	1	1	0	MerR	family	regulatory	protein
GerE	PF00196.19	gi|257053907|ref|YP_003131740.1|	-	0.11	12.1	0.0	0.17	11.5	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
FeoC	PF09012.10	gi|257053907|ref|YP_003131740.1|	-	0.12	12.4	0.0	0.19	11.8	0.0	1.3	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
TnsD	PF15978.5	gi|257053907|ref|YP_003131740.1|	-	0.2	10.6	0.0	0.26	10.2	0.0	1.1	1	0	0	1	1	1	0	Tn7-like	transposition	protein	D
NUMOD1	PF07453.13	gi|257053907|ref|YP_003131740.1|	-	0.2	12.0	0.0	0.33	11.3	0.0	1.4	1	0	0	1	1	1	0	NUMOD1	domain
TPP_enzyme_C	PF02775.21	gi|257053908|ref|YP_003131741.1|	-	2.6e-32	111.7	0.0	3.6e-32	111.3	0.0	1.2	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
PFO_beta_C	PF12367.8	gi|257053908|ref|YP_003131741.1|	-	8.4e-05	22.6	0.4	0.00021	21.4	0.4	1.7	1	0	0	1	1	1	1	Pyruvate	ferredoxin	oxidoreductase	beta	subunit	C	terminal
Sin3_corepress	PF08295.12	gi|257053908|ref|YP_003131741.1|	-	0.17	11.9	0.2	1.6	8.9	0.1	2.2	2	0	0	2	2	2	0	Sin3	family	co-repressor
POR_N	PF01855.19	gi|257053909|ref|YP_003131742.1|	-	6.3e-49	166.8	0.2	1.1e-48	166.0	0.2	1.4	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
POR	PF01558.18	gi|257053909|ref|YP_003131742.1|	-	4.8e-45	153.8	0.1	9.3e-45	152.8	0.1	1.4	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
PFOR_II	PF17147.4	gi|257053909|ref|YP_003131742.1|	-	3.5e-09	36.9	0.0	7.1e-09	35.9	0.0	1.6	1	0	0	1	1	1	1	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
TPP_enzyme_N	PF02776.18	gi|257053909|ref|YP_003131742.1|	-	0.00011	21.9	0.2	0.00032	20.4	0.2	1.8	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
Transketolase_C	PF02780.20	gi|257053909|ref|YP_003131742.1|	-	0.024	14.5	0.0	0.059	13.3	0.0	1.6	1	0	0	1	1	1	0	Transketolase,	C-terminal	domain
GFO_IDH_MocA	PF01408.22	gi|257053910|ref|YP_003131743.1|	-	3.2e-24	86.1	0.0	8.6e-24	84.7	0.0	1.7	2	0	0	2	2	2	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
GFO_IDH_MocA_C	PF02894.17	gi|257053910|ref|YP_003131743.1|	-	2e-10	40.7	0.0	4.6e-10	39.5	0.0	1.6	1	0	0	1	1	1	1	Oxidoreductase	family,	C-terminal	alpha/beta	domain
NAD_binding_3	PF03447.16	gi|257053910|ref|YP_003131743.1|	-	0.0041	17.8	0.3	0.0085	16.7	0.3	1.6	1	0	0	1	1	1	1	Homoserine	dehydrogenase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|257053910|ref|YP_003131743.1|	-	0.032	13.6	0.1	0.058	12.8	0.1	1.5	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
DapB_N	PF01113.20	gi|257053910|ref|YP_003131743.1|	-	0.063	13.4	0.3	0.21	11.7	0.3	2.0	1	1	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
F420_oxidored	PF03807.17	gi|257053910|ref|YP_003131743.1|	-	0.27	11.9	2.1	0.51	11.0	0.1	2.4	3	0	0	3	3	3	0	NADP	oxidoreductase	coenzyme	F420-dependent
HATPase_c	PF02518.26	gi|257053911|ref|YP_003131744.1|	-	1.7e-13	51.0	0.2	3.3e-13	50.1	0.2	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.6	gi|257053911|ref|YP_003131744.1|	-	5.6e-09	36.0	0.4	5.6e-09	36.0	0.4	1.7	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
HisKA_4TM	PF16926.5	gi|257053911|ref|YP_003131744.1|	-	0.00036	20.1	13.4	0.00078	19.1	13.4	1.5	1	0	0	1	1	1	1	Archaeal	4TM	region	of	histidine	kinase
HPTransfase	PF10090.9	gi|257053911|ref|YP_003131744.1|	-	0.011	15.5	0.8	0.014	15.2	0.1	1.6	2	0	0	2	2	2	0	Histidine	phosphotransferase	C-terminal	domain
HATPase_c_5	PF14501.6	gi|257053911|ref|YP_003131744.1|	-	0.011	15.6	0.0	0.024	14.5	0.0	1.6	1	0	0	1	1	1	0	GHKL	domain
DUF981	PF06168.11	gi|257053911|ref|YP_003131744.1|	-	0.33	10.9	11.7	0.51	10.2	11.7	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF981)
DUF1700	PF08006.11	gi|257053911|ref|YP_003131744.1|	-	3.7	7.0	6.9	5.7	6.4	6.9	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1700)
Usp	PF00582.26	gi|257053912|ref|YP_003131745.1|	-	3.8e-15	56.6	0.0	4.6e-15	56.4	0.0	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
DNA_photolyase	PF00875.18	gi|257053912|ref|YP_003131745.1|	-	0.0083	16.1	0.1	0.018	15.0	0.1	1.5	1	1	0	1	1	1	1	DNA	photolyase
CheC	PF04509.12	gi|257053913|ref|YP_003131746.1|	-	6.5e-16	57.9	0.9	1.3e-15	57.0	0.2	1.9	2	0	0	2	2	2	1	CheC-like	family
CheX	PF13690.6	gi|257053913|ref|YP_003131746.1|	-	9e-06	25.8	0.7	2.5e-05	24.4	0.0	2.0	2	1	0	2	2	2	1	Chemotaxis	phosphatase	CheX
Methyltransf_3	PF01596.17	gi|257053914|ref|YP_003131747.1|	-	3.2e-23	82.0	0.0	3.7e-23	81.8	0.0	1.0	1	0	0	1	1	1	1	O-methyltransferase
Methyltransf_24	PF13578.6	gi|257053914|ref|YP_003131747.1|	-	4.9e-14	53.2	0.2	1.3e-13	51.9	0.1	1.7	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|257053914|ref|YP_003131747.1|	-	6.6e-07	29.2	0.0	1e-06	28.6	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.19	gi|257053914|ref|YP_003131747.1|	-	0.00071	19.4	0.0	0.00098	18.9	0.0	1.1	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
MTS	PF05175.14	gi|257053914|ref|YP_003131747.1|	-	0.0035	16.9	0.0	0.0052	16.3	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Ubie_methyltran	PF01209.18	gi|257053914|ref|YP_003131747.1|	-	0.032	13.6	0.0	0.043	13.1	0.0	1.1	1	0	0	1	1	1	0	ubiE/COQ5	methyltransferase	family
Methyltransf_12	PF08242.12	gi|257053914|ref|YP_003131747.1|	-	0.071	13.9	0.0	0.14	12.9	0.0	1.5	1	1	0	1	1	1	0	Methyltransferase	domain
preATP-grasp_3	PF18301.1	gi|257053914|ref|YP_003131747.1|	-	0.15	12.3	0.0	1.8	8.9	0.1	2.3	1	1	1	2	2	2	0	pre	ATP-grasp	3	domain
MS_channel	PF00924.18	gi|257053915|ref|YP_003131748.1|	-	1e-30	106.9	4.0	1.3e-29	103.3	4.0	2.1	1	1	0	1	1	1	1	Mechanosensitive	ion	channel
GldM_N	PF12081.8	gi|257053915|ref|YP_003131748.1|	-	0.23	11.5	0.0	0.42	10.7	0.0	1.3	1	0	0	1	1	1	0	GldM	N-terminal	domain
DUF3040	PF11239.8	gi|257053915|ref|YP_003131748.1|	-	3.8	7.8	7.6	0.51	10.6	2.6	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3040)
AhpC-TSA	PF00578.21	gi|257053916|ref|YP_003131749.1|	-	1.9e-14	53.7	0.0	2.7e-14	53.2	0.0	1.2	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|257053916|ref|YP_003131749.1|	-	6.5e-12	45.4	0.0	8e-12	45.1	0.0	1.1	1	0	0	1	1	1	1	Redoxin
T4_deiodinase	PF00837.17	gi|257053916|ref|YP_003131749.1|	-	0.02	14.2	0.0	0.03	13.6	0.0	1.3	1	0	0	1	1	1	0	Iodothyronine	deiodinase
Fibin	PF15819.5	gi|257053916|ref|YP_003131749.1|	-	0.025	14.4	0.0	0.031	14.1	0.0	1.2	1	0	0	1	1	1	0	Fin	bud	initiation	factor	homologue
Thioredoxin_2	PF13098.6	gi|257053916|ref|YP_003131749.1|	-	0.055	13.9	0.1	0.12	12.8	0.1	1.5	1	1	0	1	1	1	0	Thioredoxin-like	domain
AsnC_trans_reg	PF01037.21	gi|257053918|ref|YP_003131751.1|	-	7.2e-15	54.7	0.1	1.6e-14	53.6	0.1	1.6	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HTH_AsnC-type	PF13404.6	gi|257053918|ref|YP_003131751.1|	-	1.8e-06	27.7	0.6	7.3e-06	25.7	0.2	2.1	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.6	gi|257053918|ref|YP_003131751.1|	-	9.2e-05	21.9	0.1	0.00079	18.9	0.1	2.2	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
FeoC	PF09012.10	gi|257053918|ref|YP_003131751.1|	-	0.014	15.5	0.0	0.025	14.7	0.0	1.3	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
HTH_27	PF13463.6	gi|257053918|ref|YP_003131751.1|	-	0.033	14.7	0.0	0.25	11.8	0.1	2.2	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
MarR_2	PF12802.7	gi|257053918|ref|YP_003131751.1|	-	0.059	13.3	0.1	0.12	12.3	0.1	1.6	1	1	1	2	2	2	0	MarR	family
HTH_11	PF08279.12	gi|257053918|ref|YP_003131751.1|	-	0.079	12.9	0.0	0.17	11.8	0.0	1.5	1	0	0	1	1	1	0	HTH	domain
HTH_Crp_2	PF13545.6	gi|257053918|ref|YP_003131751.1|	-	0.091	12.7	0.1	0.24	11.4	0.0	1.6	1	1	0	1	1	1	0	Crp-like	helix-turn-helix	domain
MarR	PF01047.22	gi|257053918|ref|YP_003131751.1|	-	0.098	12.6	0.0	0.17	11.9	0.0	1.3	1	0	0	1	1	1	0	MarR	family
HTH_54	PF18607.1	gi|257053918|ref|YP_003131751.1|	-	0.12	12.5	0.0	1.4	9.0	0.0	2.2	2	0	0	2	2	2	0	ParA	helix	turn	helix	domain
HTH_20	PF12840.7	gi|257053918|ref|YP_003131751.1|	-	0.15	12.1	1.1	2.1	8.4	0.6	2.2	2	0	0	2	2	2	0	Helix-turn-helix	domain
Aminotran_1_2	PF00155.21	gi|257053919|ref|YP_003131752.1|	-	4.8e-61	206.9	0.0	5.4e-61	206.8	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Beta_elim_lyase	PF01212.21	gi|257053919|ref|YP_003131752.1|	-	0.00028	20.3	0.0	0.00043	19.7	0.0	1.2	1	0	0	1	1	1	1	Beta-eliminating	lyase
Aminotran_5	PF00266.19	gi|257053919|ref|YP_003131752.1|	-	0.025	13.5	0.0	0.084	11.8	0.0	1.7	2	0	0	2	2	2	0	Aminotransferase	class-V
RNA_pol_Rpb2_7	PF04560.20	gi|257053919|ref|YP_003131752.1|	-	0.048	14.1	0.0	0.14	12.5	0.0	1.8	1	0	0	1	1	1	0	RNA	polymerase	Rpb2,	domain	7
OKR_DC_1	PF01276.20	gi|257053919|ref|YP_003131752.1|	-	0.096	11.4	0.0	0.26	10.0	0.0	1.8	1	1	0	1	1	1	0	Orn/Lys/Arg	decarboxylase,	major	domain
T2SSE	PF00437.20	gi|257053920|ref|YP_003131753.1|	-	2.8e-43	147.9	0.0	4.7e-43	147.2	0.0	1.3	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_29	PF13555.6	gi|257053920|ref|YP_003131753.1|	-	0.0009	18.9	0.1	0.0027	17.4	0.1	1.8	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
T2SSF	PF00482.23	gi|257053921|ref|YP_003131754.1|	-	8.2e-31	106.6	13.3	8.4e-18	64.5	0.6	3.2	3	0	0	3	3	3	2	Type	II	secretion	system	(T2SS),	protein	F
Snf7	PF03357.21	gi|257053921|ref|YP_003131754.1|	-	0.11	12.1	0.0	0.11	12.1	0.0	1.6	2	0	0	2	2	2	0	Snf7
Pilin_N	PF07790.11	gi|257053922|ref|YP_003131755.1|	-	0.28	12.1	4.4	2	9.4	4.4	2.3	1	1	1	2	2	2	0	Archaeal	Type	IV	pilin,	N-terminal
TarH	PF02203.15	gi|257053923|ref|YP_003131756.1|	-	0.07	13.0	0.5	0.1	12.5	0.5	1.1	1	0	0	1	1	1	0	Tar	ligand	binding	domain	homologue
Pantoate_ligase	PF02569.15	gi|257053924|ref|YP_003131757.1|	-	0.028	13.6	0.2	0.036	13.3	0.2	1.1	1	0	0	1	1	1	0	Pantoate-beta-alanine	ligase
LppX_LprAFG	PF07161.13	gi|257053926|ref|YP_003131759.1|	-	0.04	13.8	0.0	0.044	13.6	0.0	1.1	1	0	0	1	1	1	0	LppX_LprAFG	lipoprotein
CARDB	PF07705.11	gi|257053927|ref|YP_003131760.1|	-	2.8e-20	72.5	136.7	4.2e-05	23.7	2.1	14.0	10	3	3	14	14	14	9	CARDB
4HBT	PF03061.22	gi|257053927|ref|YP_003131760.1|	-	2.5e-10	40.5	2.6	1.5	9.3	0.0	7.3	8	0	0	8	8	8	3	Thioesterase	superfamily
Glug	PF07581.12	gi|257053927|ref|YP_003131760.1|	-	0.0059	16.9	1.0	0.0059	16.9	1.0	6.9	5	0	0	5	5	3	2	The	GLUG	motif
TOBE	PF03459.17	gi|257053927|ref|YP_003131760.1|	-	0.019	15.2	0.4	0.31	11.4	0.4	3.4	1	0	0	1	1	1	0	TOBE	domain
SoxY	PF13501.6	gi|257053927|ref|YP_003131760.1|	-	0.021	15.1	6.3	2.6	8.3	0.1	4.3	4	0	0	4	4	3	0	Sulfur	oxidation	protein	SoxY
DUF2341	PF10102.9	gi|257053927|ref|YP_003131760.1|	-	0.027	15.1	18.6	0.21	12.2	2.1	5.6	4	0	0	4	4	4	0	Domain	of	unknown	function	(DUF2341)
DUF1573	PF07610.11	gi|257053927|ref|YP_003131760.1|	-	0.035	14.1	20.3	1	9.5	0.1	8.7	7	2	2	9	9	8	0	Protein	of	unknown	function	(DUF1573)
ASH	PF15780.5	gi|257053927|ref|YP_003131760.1|	-	0.052	13.8	47.2	0.35	11.1	0.2	10.6	7	3	5	12	12	12	0	Abnormal	spindle-like	microcephaly-assoc'd,	ASPM-SPD-2-Hydin
Fn3-like	PF14310.6	gi|257053927|ref|YP_003131760.1|	-	0.16	12.1	2.8	24	5.1	0.0	5.7	5	0	0	5	5	4	0	Fibronectin	type	III-like	domain
VHL	PF01847.16	gi|257053927|ref|YP_003131760.1|	-	0.17	11.8	0.0	0.8	9.7	0.0	2.0	2	0	0	2	2	2	0	VHL	beta	domain
DUF4981	PF16353.5	gi|257053927|ref|YP_003131760.1|	-	0.38	11.3	25.2	3.6	8.2	0.0	9.7	9	2	1	10	10	10	0	Domain	of	unknown	function(DUF4981)
But2	PF09792.9	gi|257053927|ref|YP_003131760.1|	-	1.7	9.0	9.6	12	6.3	0.4	5.0	1	1	1	3	3	3	0	Ubiquitin	3	binding	protein	But2	C-terminal	domain
Arrestin_C	PF02752.22	gi|257053927|ref|YP_003131760.1|	-	3.1	8.3	5.1	20	5.6	0.0	4.4	5	1	0	5	5	4	0	Arrestin	(or	S-antigen),	C-terminal	domain
SSrecog	PF03531.14	gi|257053927|ref|YP_003131760.1|	-	4.8	7.2	5.7	17	5.4	0.3	4.1	4	0	0	4	4	3	0	Structure-specific	recognition	protein	(SSRP1)
Pilin_N	PF07790.11	gi|257053930|ref|YP_003131763.1|	-	0.084	13.8	0.7	1.8	9.5	0.1	2.5	2	0	0	2	2	2	0	Archaeal	Type	IV	pilin,	N-terminal
RFX1_trans_act	PF04589.13	gi|257053930|ref|YP_003131763.1|	-	0.11	12.7	1.3	0.26	11.4	1.3	1.6	1	1	0	1	1	1	0	RFX1	transcription	activation	region
Fungal_trans_2	PF11951.8	gi|257053931|ref|YP_003131764.1|	-	0.17	10.6	0.0	0.21	10.4	0.0	1.1	1	0	0	1	1	1	0	Fungal	specific	transcription	factor	domain
Pilin_N	PF07790.11	gi|257053932|ref|YP_003131765.1|	-	0.00048	21.0	0.0	0.0013	19.6	0.0	1.9	1	0	0	1	1	1	1	Archaeal	Type	IV	pilin,	N-terminal
Bactofilin	PF04519.13	gi|257053933|ref|YP_003131766.1|	-	0.23	11.8	5.4	27	5.1	0.1	4.0	2	1	0	2	2	2	0	Polymer-forming	cytoskeletal
DUF4402	PF14352.6	gi|257053933|ref|YP_003131766.1|	-	8.8	7.0	14.3	0.51	11.0	1.2	3.8	4	1	0	4	4	4	0	Domain	of	unknown	function	(DUF4402)
Phage_Arf	PF17585.2	gi|257053934|ref|YP_003131767.1|	-	0.076	13.0	0.1	0.52	10.3	0.0	2.4	3	0	0	3	3	3	0	Accessory	recombination	function	protein
GTP_EFTU	PF00009.27	gi|257053935|ref|YP_003131768.1|	-	5.3e-65	218.6	0.4	9.4e-65	217.8	0.4	1.4	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
EFG_C	PF00679.24	gi|257053935|ref|YP_003131768.1|	-	1.3e-24	86.1	0.1	2.6e-23	81.8	0.0	2.7	2	0	0	2	2	2	1	Elongation	factor	G	C-terminus
EFG_IV	PF03764.18	gi|257053935|ref|YP_003131768.1|	-	1.7e-23	82.7	0.0	5.2e-23	81.1	0.0	1.9	1	0	0	1	1	1	1	Elongation	factor	G,	domain	IV
EFG_II	PF14492.6	gi|257053935|ref|YP_003131768.1|	-	1.1e-21	76.7	0.6	3.2e-21	75.2	0.6	1.9	1	0	0	1	1	1	1	Elongation	Factor	G,	domain	II
GTP_EFTU_D2	PF03144.25	gi|257053935|ref|YP_003131768.1|	-	1.3e-16	60.8	1.9	5.7e-16	58.7	1.9	2.3	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.23	gi|257053935|ref|YP_003131768.1|	-	1.9e-05	24.7	1.2	0.00013	22.0	0.1	2.7	3	0	0	3	3	3	1	50S	ribosome-binding	GTPase
SRPRB	PF09439.10	gi|257053935|ref|YP_003131768.1|	-	0.097	12.1	0.1	0.32	10.4	0.1	1.8	1	1	0	1	1	1	0	Signal	recognition	particle	receptor	beta	subunit
RsgA_GTPase	PF03193.16	gi|257053935|ref|YP_003131768.1|	-	0.16	11.8	1.5	1	9.2	0.0	2.7	3	1	0	3	3	3	0	RsgA	GTPase
Aldo_ket_red	PF00248.21	gi|257053936|ref|YP_003131769.1|	-	5e-72	242.6	0.0	5.6e-72	242.4	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
RHH_1	PF01402.21	gi|257053937|ref|YP_003131770.1|	-	0.0038	17.1	0.1	0.0066	16.3	0.1	1.4	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
IclR	PF01614.18	gi|257053937|ref|YP_003131770.1|	-	0.074	12.9	0.0	0.094	12.5	0.0	1.1	1	0	0	1	1	1	0	Bacterial	transcriptional	regulator
UPF0058	PF01893.16	gi|257053938|ref|YP_003131771.1|	-	4.4e-32	110.2	0.9	4.9e-32	110.1	0.9	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0058
MAT1	PF06391.13	gi|257053938|ref|YP_003131771.1|	-	0.022	14.6	0.1	0.024	14.5	0.1	1.0	1	0	0	1	1	1	0	CDK-activating	kinase	assembly	factor	MAT1
Ada3	PF10198.9	gi|257053938|ref|YP_003131771.1|	-	0.025	14.7	0.0	0.027	14.6	0.0	1.2	1	0	0	1	1	1	0	Histone	acetyltransferases	subunit	3
ECH_1	PF00378.20	gi|257053939|ref|YP_003131772.1|	-	1.3e-39	136.0	0.0	1.5e-39	135.8	0.0	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
ECH_2	PF16113.5	gi|257053939|ref|YP_003131772.1|	-	2.5e-22	79.8	0.0	3.8e-22	79.2	0.0	1.3	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
FAD_binding_7	PF03441.14	gi|257053940|ref|YP_003131773.1|	-	5.1e-79	264.4	1.5	6.9e-79	264.0	1.5	1.2	1	0	0	1	1	1	1	FAD	binding	domain	of	DNA	photolyase
DNA_photolyase	PF00875.18	gi|257053940|ref|YP_003131773.1|	-	1.4e-45	155.3	0.4	1.1e-44	152.3	0.1	2.1	2	0	0	2	2	2	1	DNA	photolyase
AvrRpt-cleavage	PF05627.11	gi|257053940|ref|YP_003131773.1|	-	0.51	9.7	3.9	0.7	9.3	0.2	2.8	3	0	0	3	3	3	0	Cleavage	site	for	pathogenic	type	III	effector	avirulence	factor	Avr
Sod_Fe_N	PF00081.22	gi|257053941|ref|YP_003131774.1|	-	1.4e-29	102.3	0.7	2.8e-29	101.4	0.7	1.5	1	0	0	1	1	1	1	Iron/manganese	superoxide	dismutases,	alpha-hairpin	domain
Sod_Fe_C	PF02777.18	gi|257053941|ref|YP_003131774.1|	-	3.3e-29	101.1	0.0	4.7e-29	100.6	0.0	1.2	1	0	0	1	1	1	1	Iron/manganese	superoxide	dismutases,	C-terminal	domain
HisKA_7TM	PF16927.5	gi|257053942|ref|YP_003131775.1|	-	1.6e-50	172.2	14.7	2e-50	171.9	14.7	1.1	1	0	0	1	1	1	1	N-terminal	7TM	region	of	histidine	kinase
HATPase_c	PF02518.26	gi|257053942|ref|YP_003131775.1|	-	6.6e-15	55.6	0.0	1.2e-14	54.7	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|257053942|ref|YP_003131775.1|	-	1.5e-11	44.2	1.3	1.5e-11	44.2	1.3	2.1	3	0	0	3	3	2	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_8	PF13188.7	gi|257053942|ref|YP_003131775.1|	-	1.5e-05	24.8	0.1	6.3e-05	22.9	0.1	2.1	1	0	0	1	1	1	1	PAS	domain
PAS_4	PF08448.10	gi|257053942|ref|YP_003131775.1|	-	2.1e-05	24.7	1.1	2.1e-05	24.7	1.1	2.9	3	1	0	3	3	3	1	PAS	fold
PAS_9	PF13426.7	gi|257053942|ref|YP_003131775.1|	-	0.0003	21.0	0.2	0.0024	18.1	0.0	2.6	2	1	0	2	2	2	1	PAS	domain
PAS	PF00989.25	gi|257053942|ref|YP_003131775.1|	-	0.00046	20.2	0.1	0.0012	18.8	0.1	1.7	1	1	0	1	1	1	1	PAS	fold
dCache_3	PF14827.6	gi|257053942|ref|YP_003131775.1|	-	0.0006	19.5	0.0	0.0012	18.5	0.0	1.4	1	0	0	1	1	1	1	Double	sensory	domain	of	two-component	sensor	kinase
HATPase_c_2	PF13581.6	gi|257053942|ref|YP_003131775.1|	-	0.00088	19.2	0.5	0.0025	17.8	0.1	1.9	1	1	1	2	2	2	1	Histidine	kinase-like	ATPase	domain
PAS_7	PF12860.7	gi|257053942|ref|YP_003131775.1|	-	0.012	15.8	0.0	0.053	13.7	0.0	2.2	1	1	0	1	1	1	0	PAS	fold
PAS_10	PF13596.6	gi|257053942|ref|YP_003131775.1|	-	0.03	14.9	0.1	0.067	13.8	0.1	1.6	1	0	0	1	1	1	0	PAS	domain
HATPase_c_5	PF14501.6	gi|257053942|ref|YP_003131775.1|	-	0.036	14.0	0.0	0.12	12.3	0.0	1.8	1	1	0	1	1	1	0	GHKL	domain
TFIID_20kDa	PF03847.13	gi|257053943|ref|YP_003131776.1|	-	0.086	13.4	0.2	0.16	12.4	0.2	1.5	1	1	0	1	1	1	0	Transcription	initiation	factor	TFIID	subunit	A
Lactamase_B	PF00753.27	gi|257053945|ref|YP_003131778.1|	-	2e-23	83.5	14.8	5.3e-22	78.8	14.8	2.0	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|257053945|ref|YP_003131778.1|	-	1.1e-06	28.3	3.1	1.6e-06	27.8	3.1	1.4	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_6	PF16661.5	gi|257053945|ref|YP_003131778.1|	-	0.00031	20.2	0.0	0.00049	19.6	0.0	1.3	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.6	gi|257053945|ref|YP_003131778.1|	-	0.0044	16.9	2.3	0.035	14.0	2.3	2.0	1	1	1	2	2	2	1	Beta-lactamase	superfamily	domain
Response_reg	PF00072.24	gi|257053946|ref|YP_003131779.1|	-	1.2e-21	77.0	0.3	2.1e-21	76.2	0.1	1.5	2	0	0	2	2	2	1	Response	regulator	receiver	domain
HalX	PF08663.10	gi|257053946|ref|YP_003131779.1|	-	3.6e-21	75.3	7.8	8.3e-21	74.1	7.8	1.7	1	0	0	1	1	1	1	HalX	domain
PCRF	PF03462.18	gi|257053946|ref|YP_003131779.1|	-	0.062	13.2	0.5	0.062	13.2	0.5	1.5	2	0	0	2	2	2	0	PCRF	domain
DUF1241	PF06840.11	gi|257053946|ref|YP_003131779.1|	-	0.081	12.6	0.1	0.15	11.7	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1241)
ATPase	PF06745.13	gi|257053947|ref|YP_003131780.1|	-	0.00024	20.5	0.4	0.0021	17.5	0.4	1.9	1	1	0	1	1	1	1	KaiC
PAXNEB	PF05625.11	gi|257053947|ref|YP_003131780.1|	-	0.027	13.6	0.0	0.046	12.9	0.0	1.6	1	1	0	1	1	1	0	PAXNEB	protein
MutS_I	PF01624.20	gi|257053948|ref|YP_003131781.1|	-	0.1	12.8	0.0	0.17	12.2	0.0	1.3	1	0	0	1	1	1	0	MutS	domain	I
ApoA-II	PF04711.13	gi|257053949|ref|YP_003131782.1|	-	0.17	12.1	0.0	0.24	11.6	0.0	1.2	1	0	0	1	1	1	0	Apolipoprotein	A-II	(ApoA-II)
PIN	PF01850.21	gi|257053950|ref|YP_003131783.1|	-	8.9e-08	32.7	0.1	1.2e-07	32.2	0.1	1.2	1	0	0	1	1	1	1	PIN	domain
PIN_4	PF13638.6	gi|257053950|ref|YP_003131783.1|	-	0.02	15.2	0.0	0.026	14.8	0.0	1.1	1	0	0	1	1	1	0	PIN	domain
Thy1	PF02511.15	gi|257053951|ref|YP_003131784.1|	-	3.7e-57	193.2	0.0	4.4e-57	193.0	0.0	1.0	1	0	0	1	1	1	1	Thymidylate	synthase	complementing	protein
MreB_Mbl	PF06723.13	gi|257053952|ref|YP_003131785.1|	-	2.2e-06	26.8	0.2	4.3e-06	25.8	0.2	1.6	1	1	0	1	1	1	1	MreB/Mbl	protein
BcrAD_BadFG	PF01869.20	gi|257053952|ref|YP_003131785.1|	-	0.0095	15.5	0.3	0.036	13.5	0.0	2.1	3	0	0	3	3	3	1	BadF/BadG/BcrA/BcrD	ATPase	family
DNA_gyraseB	PF00204.25	gi|257053952|ref|YP_003131785.1|	-	0.02	14.4	0.2	0.04	13.4	0.1	1.5	2	0	0	2	2	2	0	DNA	gyrase	B
Mrr_cat	PF04471.12	gi|257053953|ref|YP_003131786.1|	-	2e-05	24.6	0.0	4.3e-05	23.5	0.0	1.5	1	0	0	1	1	1	1	Restriction	endonuclease
DUF2564	PF10819.8	gi|257053953|ref|YP_003131786.1|	-	0.32	11.4	6.2	1.9	9.0	0.1	2.9	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2564)
GspH	PF12019.8	gi|257053953|ref|YP_003131786.1|	-	0.85	10.1	3.4	23	5.4	0.3	3.5	4	0	0	4	4	4	0	Type	II	transport	protein	GspH
PTS_IIA	PF02255.16	gi|257053953|ref|YP_003131786.1|	-	6.2	6.9	5.7	0.84	9.7	0.1	2.3	3	0	0	3	3	3	0	PTS	system,	Lactose/Cellobiose	specific	IIA	subunit
DNA_binding_1	PF01035.20	gi|257053954|ref|YP_003131787.1|	-	4.5e-07	29.9	0.0	7e-07	29.3	0.0	1.3	1	0	0	1	1	1	1	6-O-methylguanine	DNA	methyltransferase,	DNA	binding	domain
PQQ_2	PF13360.6	gi|257053955|ref|YP_003131788.1|	-	5e-38	131.0	19.5	4e-21	75.7	8.7	4.0	1	1	2	3	3	3	3	PQQ-like	domain
PQQ_3	PF13570.6	gi|257053955|ref|YP_003131788.1|	-	7.3e-27	93.1	25.8	6.7e-05	23.2	0.4	8.4	6	2	2	8	8	8	5	PQQ-like	domain
PQQ	PF01011.21	gi|257053955|ref|YP_003131788.1|	-	3.9e-13	48.6	10.9	1.8e-05	24.4	0.0	6.3	7	0	0	7	7	7	3	PQQ	enzyme	repeat
CDC48_2	PF02933.17	gi|257053955|ref|YP_003131788.1|	-	0.014	15.2	0.0	0.034	13.9	0.0	1.6	1	0	0	1	1	1	0	Cell	division	protein	48	(CDC48),	domain	2
TAT_signal	PF10518.9	gi|257053955|ref|YP_003131788.1|	-	0.043	13.7	2.3	0.094	12.6	2.3	1.6	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
UCR_Fe-S_N	PF10399.9	gi|257053955|ref|YP_003131788.1|	-	3	7.3	5.5	1.8	8.0	2.2	2.3	2	0	0	2	2	2	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
BAAT_C	PF08840.11	gi|257053956|ref|YP_003131789.1|	-	6e-33	114.6	0.0	3.1e-32	112.2	0.0	2.0	2	1	0	2	2	2	1	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
DLH	PF01738.18	gi|257053956|ref|YP_003131789.1|	-	1.8e-06	27.7	0.0	0.0035	16.9	0.0	3.0	2	1	0	2	2	2	2	Dienelactone	hydrolase	family
Bile_Hydr_Trans	PF04775.14	gi|257053956|ref|YP_003131789.1|	-	0.0042	17.2	0.0	0.019	15.0	0.0	1.9	1	1	0	1	1	1	1	Acyl-CoA	thioester	hydrolase/BAAT	N-terminal	region
CPBP	PF02517.16	gi|257053957|ref|YP_003131790.1|	-	1.5e-11	44.5	6.0	1.5e-11	44.5	6.0	2.0	2	0	0	2	2	2	1	CPBP	intramembrane	metalloprotease
Lon_C	PF05362.13	gi|257053958|ref|YP_003131791.1|	-	9.8e-35	120.0	4.5	1.5e-34	119.4	4.5	1.3	1	0	0	1	1	1	1	Lon	protease	(S16)	C-terminal	proteolytic	domain
AAA_32	PF13654.6	gi|257053958|ref|YP_003131791.1|	-	3.9e-31	108.4	0.0	6.3e-24	84.6	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
Mg_chelatase	PF01078.21	gi|257053958|ref|YP_003131791.1|	-	2.6e-16	59.6	0.1	3e-10	39.8	0.0	2.4	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
Sigma54_activat	PF00158.26	gi|257053958|ref|YP_003131791.1|	-	4.3e-15	55.8	0.0	5.2e-09	36.0	0.0	2.4	2	0	0	2	2	2	2	Sigma-54	interaction	domain
ChlI	PF13541.6	gi|257053958|ref|YP_003131791.1|	-	6.8e-10	38.8	0.6	1.7e-09	37.5	0.6	1.7	1	0	0	1	1	1	1	Subunit	ChlI	of	Mg-chelatase
AAA_5	PF07728.14	gi|257053958|ref|YP_003131791.1|	-	1.9e-09	37.6	0.0	0.0015	18.5	0.0	2.6	2	0	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
MCM	PF00493.23	gi|257053958|ref|YP_003131791.1|	-	1e-07	31.3	0.1	0.0037	16.4	0.0	2.3	2	0	0	2	2	2	2	MCM	P-loop	domain
AAA	PF00004.29	gi|257053958|ref|YP_003131791.1|	-	1.5e-06	28.7	0.0	0.046	14.2	0.0	2.7	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
RuvB_N	PF05496.12	gi|257053958|ref|YP_003131791.1|	-	3e-06	27.1	0.1	0.0057	16.4	0.0	2.5	2	0	0	2	2	2	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
Sigma54_activ_2	PF14532.6	gi|257053958|ref|YP_003131791.1|	-	5.6e-05	23.3	0.0	0.081	13.0	0.0	2.4	2	0	0	2	2	2	2	Sigma-54	interaction	domain
TIP49	PF06068.13	gi|257053958|ref|YP_003131791.1|	-	0.00011	21.6	0.6	0.042	13.0	0.0	2.8	3	0	0	3	3	3	1	TIP49	P-loop	domain
AAA_3	PF07726.11	gi|257053958|ref|YP_003131791.1|	-	0.00021	21.2	0.2	0.37	10.7	0.0	2.7	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_7	PF12775.7	gi|257053958|ref|YP_003131791.1|	-	0.00023	20.7	0.0	0.00066	19.2	0.0	1.7	2	0	0	2	2	2	1	P-loop	containing	dynein	motor	region
AAA_22	PF13401.6	gi|257053958|ref|YP_003131791.1|	-	0.00057	20.2	0.0	0.011	16.0	0.0	2.5	2	0	0	2	2	2	1	AAA	domain
AAA_19	PF13245.6	gi|257053958|ref|YP_003131791.1|	-	0.0006	20.2	1.3	0.65	10.3	0.0	3.0	3	0	0	3	3	2	2	AAA	domain
AAA_30	PF13604.6	gi|257053958|ref|YP_003131791.1|	-	0.002	17.9	0.0	0.17	11.6	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
AAA_PrkA	PF08298.11	gi|257053958|ref|YP_003131791.1|	-	0.0022	16.9	0.0	0.11	11.4	0.0	2.2	2	0	0	2	2	2	1	PrkA	AAA	domain
MCM_lid	PF17855.1	gi|257053958|ref|YP_003131791.1|	-	0.0069	16.8	0.5	0.04	14.3	0.1	2.3	1	1	1	2	2	2	1	MCM	AAA-lid	domain
AAA_33	PF13671.6	gi|257053958|ref|YP_003131791.1|	-	0.014	15.5	0.1	0.053	13.7	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
PhoH	PF02562.16	gi|257053958|ref|YP_003131791.1|	-	0.015	14.8	0.0	0.029	13.8	0.0	1.5	1	0	0	1	1	1	0	PhoH-like	protein
IstB_IS21	PF01695.17	gi|257053958|ref|YP_003131791.1|	-	0.022	14.5	0.0	0.05	13.3	0.0	1.6	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
ABC_tran	PF00005.27	gi|257053958|ref|YP_003131791.1|	-	0.023	15.2	0.0	0.11	13.0	0.0	2.1	2	0	0	2	2	1	0	ABC	transporter
DUF815	PF05673.13	gi|257053958|ref|YP_003131791.1|	-	0.024	13.8	0.0	0.05	12.8	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
DUF4116	PF13475.6	gi|257053958|ref|YP_003131791.1|	-	0.038	13.7	0.5	1.4	8.7	0.1	2.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4116)
NACHT	PF05729.12	gi|257053958|ref|YP_003131791.1|	-	0.041	13.8	0.0	0.075	12.9	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
TrwB_AAD_bind	PF10412.9	gi|257053958|ref|YP_003131791.1|	-	0.048	12.6	0.0	0.072	12.0	0.0	1.2	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_10	PF12846.7	gi|257053958|ref|YP_003131791.1|	-	0.066	12.1	0.0	0.18	10.7	0.0	1.7	2	0	0	2	2	2	0	AAA-like	domain
AAA_18	PF13238.6	gi|257053958|ref|YP_003131791.1|	-	0.11	13.1	0.1	0.92	10.1	0.0	2.6	2	1	0	2	2	2	0	AAA	domain
CTP_transf_like	PF01467.26	gi|257053959|ref|YP_003131792.1|	-	3.7e-13	49.9	0.1	9e-13	48.6	0.1	1.7	1	1	0	1	1	1	1	Cytidylyltransferase-like
SAM_adeno_trans	PF01887.16	gi|257053960|ref|YP_003131793.1|	-	3.8e-73	245.8	0.1	4.3e-73	245.6	0.1	1.0	1	0	0	1	1	1	1	S-adenosyl-l-methionine	hydroxide	adenosyltransferase
Caroten_synth	PF04240.12	gi|257053961|ref|YP_003131794.1|	-	8.9e-11	42.0	14.1	1.3e-10	41.5	14.1	1.3	1	1	0	1	1	1	1	Carotenoid	biosynthesis	protein
Cpn60_TCP1	PF00118.24	gi|257053963|ref|YP_003131796.1|	-	3.4e-147	491.0	11.4	3.8e-147	490.9	11.4	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
Amidohydro_2	PF04909.14	gi|257053964|ref|YP_003131797.1|	-	5.6e-15	55.9	0.5	2.1e-13	50.7	0.1	2.0	2	0	0	2	2	2	2	Amidohydrolase
Glycos_transf_2	PF00535.26	gi|257053965|ref|YP_003131798.1|	-	2.5e-13	50.2	0.5	3.9e-13	49.5	0.1	1.7	2	1	0	2	2	2	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|257053965|ref|YP_003131798.1|	-	3e-05	24.0	3.7	0.00093	19.2	3.7	2.2	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.9	gi|257053965|ref|YP_003131798.1|	-	0.00085	18.9	0.0	0.0069	15.9	0.0	2.0	2	0	0	2	2	2	1	Glycosyltransferase	like	family	2
Methyltransf_25	PF13649.6	gi|257053966|ref|YP_003131799.1|	-	1.2e-23	83.7	0.1	2.8e-23	82.5	0.0	1.6	2	0	0	2	2	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|257053966|ref|YP_003131799.1|	-	5.1e-23	81.5	0.1	1.5e-22	80.0	0.0	1.7	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|257053966|ref|YP_003131799.1|	-	7.1e-17	61.6	0.0	1e-16	61.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|257053966|ref|YP_003131799.1|	-	5.3e-15	55.6	0.0	7e-15	55.2	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|257053966|ref|YP_003131799.1|	-	5.3e-15	55.4	0.0	9.2e-15	54.6	0.0	1.3	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_12	PF08242.12	gi|257053966|ref|YP_003131799.1|	-	2.3e-13	50.7	0.0	4e-13	50.0	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
MetW	PF07021.12	gi|257053966|ref|YP_003131799.1|	-	6.1e-08	32.5	0.0	8.1e-08	32.1	0.0	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
RrnaAD	PF00398.20	gi|257053966|ref|YP_003131799.1|	-	2.9e-05	23.3	0.0	3.7e-05	22.9	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
UPF0020	PF01170.18	gi|257053966|ref|YP_003131799.1|	-	6.4e-05	22.7	0.0	0.00015	21.5	0.0	1.6	1	1	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
CMAS	PF02353.20	gi|257053966|ref|YP_003131799.1|	-	0.00027	20.3	0.0	0.00036	19.9	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
TPMT	PF05724.11	gi|257053966|ref|YP_003131799.1|	-	0.00066	19.4	0.0	0.0012	18.5	0.0	1.4	1	0	0	1	1	1	1	Thiopurine	S-methyltransferase	(TPMT)
MTS	PF05175.14	gi|257053966|ref|YP_003131799.1|	-	0.00066	19.3	0.0	0.00094	18.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_9	PF08003.11	gi|257053966|ref|YP_003131799.1|	-	0.00094	18.2	0.0	0.0013	17.7	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
NodS	PF05401.11	gi|257053966|ref|YP_003131799.1|	-	0.0012	18.5	0.0	0.0015	18.2	0.0	1.2	1	0	0	1	1	1	1	Nodulation	protein	S	(NodS)
Methyltransf_15	PF09445.10	gi|257053966|ref|YP_003131799.1|	-	0.0013	18.3	0.0	0.0017	18.0	0.0	1.2	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
Methyltransf_4	PF02390.17	gi|257053966|ref|YP_003131799.1|	-	0.0016	18.0	0.0	0.0022	17.5	0.0	1.2	1	0	0	1	1	1	1	Putative	methyltransferase
Methyltransf_20	PF12147.8	gi|257053966|ref|YP_003131799.1|	-	0.0018	17.5	0.0	0.0029	16.8	0.0	1.4	1	0	0	1	1	1	1	Putative	methyltransferase
TehB	PF03848.14	gi|257053966|ref|YP_003131799.1|	-	0.0034	16.8	0.0	0.0046	16.4	0.0	1.2	1	0	0	1	1	1	1	Tellurite	resistance	protein	TehB
Methyltransf_32	PF13679.6	gi|257053966|ref|YP_003131799.1|	-	0.007	16.4	0.0	0.0097	15.9	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.19	gi|257053966|ref|YP_003131799.1|	-	0.014	15.1	0.0	0.021	14.6	0.0	1.2	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_18	PF12847.7	gi|257053966|ref|YP_003131799.1|	-	0.044	13.7	0.0	0.059	13.3	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
FtsJ	PF01728.19	gi|257053966|ref|YP_003131799.1|	-	0.058	13.5	0.0	0.07	13.2	0.0	1.2	1	0	0	1	1	1	0	FtsJ-like	methyltransferase
DUF938	PF06080.12	gi|257053966|ref|YP_003131799.1|	-	0.079	12.7	0.0	0.16	11.7	0.0	1.4	2	0	0	2	2	1	0	Protein	of	unknown	function	(DUF938)
tRNA_U5-meth_tr	PF05958.11	gi|257053966|ref|YP_003131799.1|	-	0.18	10.8	0.0	0.28	10.1	0.0	1.3	1	0	0	1	1	1	0	tRNA	(Uracil-5-)-methyltransferase
HTH_24	PF13412.6	gi|257053967|ref|YP_003131800.1|	-	6.2e-05	22.5	0.1	0.00013	21.5	0.0	1.5	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|257053967|ref|YP_003131800.1|	-	0.00011	22.1	0.2	0.00017	21.4	0.2	1.4	1	1	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|257053967|ref|YP_003131800.1|	-	0.00015	21.7	0.2	0.00034	20.6	0.2	1.7	1	1	0	1	1	1	1	Helix-turn-helix	domain
GntR	PF00392.21	gi|257053967|ref|YP_003131800.1|	-	0.00017	21.1	0.1	0.00026	20.6	0.1	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
MarR	PF01047.22	gi|257053967|ref|YP_003131800.1|	-	0.0011	18.8	0.0	0.0017	18.2	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_12	PF08461.10	gi|257053967|ref|YP_003131800.1|	-	0.01	15.7	0.2	0.047	13.7	0.2	2.1	1	1	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
TFIIE_alpha	PF02002.17	gi|257053967|ref|YP_003131800.1|	-	0.016	15.1	0.0	0.02	14.8	0.0	1.2	1	0	0	1	1	1	0	TFIIE	alpha	subunit
HTH_5	PF01022.20	gi|257053967|ref|YP_003131800.1|	-	0.052	13.4	0.0	0.075	12.9	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_Crp_2	PF13545.6	gi|257053967|ref|YP_003131800.1|	-	0.055	13.5	0.1	0.1	12.6	0.1	1.6	1	1	0	1	1	1	0	Crp-like	helix-turn-helix	domain
PadR	PF03551.14	gi|257053967|ref|YP_003131800.1|	-	0.079	12.9	0.2	0.1	12.6	0.2	1.4	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
TrmB	PF01978.19	gi|257053967|ref|YP_003131800.1|	-	0.08	12.8	0.1	0.11	12.4	0.1	1.2	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Rrf2	PF02082.20	gi|257053967|ref|YP_003131800.1|	-	0.11	12.9	0.0	0.16	12.4	0.0	1.2	1	0	0	1	1	1	0	Transcriptional	regulator
RAG1	PF12940.7	gi|257053967|ref|YP_003131800.1|	-	0.14	10.2	0.0	0.14	10.2	0.0	1.1	1	0	0	1	1	1	0	Recombination-activation	protein	1	(RAG1),	recombinase
CxxCxxCC	PF03692.15	gi|257053968|ref|YP_003131801.1|	-	6.7e-16	58.8	0.1	1.4e-15	57.8	0.1	1.6	1	1	0	1	1	1	1	Putative	zinc-	or	iron-chelating	domain
TRAM	PF01938.20	gi|257053969|ref|YP_003131802.1|	-	2e-12	46.9	3.2	3.6e-12	46.1	3.0	1.5	2	0	0	2	2	2	1	TRAM	domain
LexA_DNA_bind	PF01726.16	gi|257053970|ref|YP_003131803.1|	-	0.00077	19.2	0.0	0.0012	18.6	0.0	1.3	1	0	0	1	1	1	1	LexA	DNA	binding	domain
HTH_24	PF13412.6	gi|257053970|ref|YP_003131803.1|	-	0.016	14.7	1.6	0.12	11.9	0.3	2.4	2	1	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|257053970|ref|YP_003131803.1|	-	0.047	13.5	0.3	0.47	10.3	0.2	2.4	1	1	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
RepL	PF05732.11	gi|257053970|ref|YP_003131803.1|	-	0.077	12.4	0.0	0.091	12.2	0.0	1.1	1	0	0	1	1	1	0	Firmicute	plasmid	replication	protein	(RepL)
HTH_6	PF01418.17	gi|257053970|ref|YP_003131803.1|	-	0.1	12.6	0.0	0.13	12.3	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain,	rpiR	family
HTH_20	PF12840.7	gi|257053970|ref|YP_003131803.1|	-	0.11	12.6	0.0	0.32	11.1	0.0	1.7	1	1	0	1	1	1	0	Helix-turn-helix	domain
PEGA	PF08308.11	gi|257053970|ref|YP_003131803.1|	-	0.14	12.0	0.0	0.19	11.6	0.0	1.3	1	0	0	1	1	1	0	PEGA	domain
HTH_20	PF12840.7	gi|257053971|ref|YP_003131804.1|	-	3.2e-13	49.5	1.1	2.1e-09	37.3	0.1	2.4	2	0	0	2	2	2	2	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|257053971|ref|YP_003131804.1|	-	1.9e-10	40.4	0.1	1.2e-07	31.4	0.0	2.3	2	0	0	2	2	2	2	Bacterial	regulatory	protein,	arsR	family
HTH_34	PF13601.6	gi|257053971|ref|YP_003131804.1|	-	5.3e-10	39.3	0.0	0.00013	22.0	0.0	2.2	2	0	0	2	2	2	2	Winged	helix	DNA-binding	domain
MarR	PF01047.22	gi|257053971|ref|YP_003131804.1|	-	1.8e-09	37.4	0.1	1.9e-07	30.9	0.0	2.2	2	0	0	2	2	2	1	MarR	family
MarR_2	PF12802.7	gi|257053971|ref|YP_003131804.1|	-	1.5e-08	34.4	1.4	5.4e-08	32.6	0.2	2.2	2	0	0	2	2	2	1	MarR	family
HTH_24	PF13412.6	gi|257053971|ref|YP_003131804.1|	-	2.3e-08	33.4	0.0	7.9e-08	31.7	0.0	1.8	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.12	gi|257053971|ref|YP_003131804.1|	-	3.1e-06	27.0	0.0	5.8e-06	26.2	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
TrmB	PF01978.19	gi|257053971|ref|YP_003131804.1|	-	2e-05	24.4	0.0	0.00043	20.1	0.0	2.1	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_Crp_2	PF13545.6	gi|257053971|ref|YP_003131804.1|	-	2.4e-05	24.2	0.1	5.6e-05	23.0	0.1	1.7	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
DUF4423	PF14394.6	gi|257053971|ref|YP_003131804.1|	-	0.00038	20.2	0.0	0.17	11.6	0.0	2.1	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF4423)
HTH_DeoR	PF08220.12	gi|257053971|ref|YP_003131804.1|	-	0.00047	19.8	0.0	0.00091	18.9	0.0	1.4	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
GntR	PF00392.21	gi|257053971|ref|YP_003131804.1|	-	0.00055	19.5	0.0	0.0015	18.2	0.0	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
Fe_dep_repress	PF01325.19	gi|257053971|ref|YP_003131804.1|	-	0.00062	19.9	0.0	0.0012	18.9	0.0	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Rrf2	PF02082.20	gi|257053971|ref|YP_003131804.1|	-	0.00064	20.0	0.1	0.0021	18.4	0.0	1.8	2	0	0	2	2	1	1	Transcriptional	regulator
HTH_IclR	PF09339.10	gi|257053971|ref|YP_003131804.1|	-	0.00069	19.4	3.0	0.006	16.3	0.3	3.0	2	1	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_AsnC-type	PF13404.6	gi|257053971|ref|YP_003131804.1|	-	0.0021	17.8	2.8	0.0032	17.3	0.1	2.4	3	0	0	3	3	2	1	AsnC-type	helix-turn-helix	domain
HTH_10	PF04967.12	gi|257053971|ref|YP_003131804.1|	-	0.0087	15.9	0.2	0.029	14.2	0.0	1.9	2	0	0	2	2	1	1	HTH	DNA	binding	domain
HTH_27	PF13463.6	gi|257053971|ref|YP_003131804.1|	-	0.014	15.9	0.0	0.037	14.5	0.0	1.8	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
RP-C	PF03428.13	gi|257053971|ref|YP_003131804.1|	-	0.048	13.3	0.0	1.6	8.3	0.0	2.3	2	0	0	2	2	2	0	Replication	protein	C	N-terminal	domain
VirC2	PF07181.11	gi|257053971|ref|YP_003131804.1|	-	0.067	12.7	0.0	0.12	11.9	0.0	1.4	1	0	0	1	1	1	0	VirC2	protein
DUF2250	PF10007.9	gi|257053971|ref|YP_003131804.1|	-	0.068	13.3	0.0	0.11	12.6	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_36	PF13730.6	gi|257053971|ref|YP_003131804.1|	-	0.073	13.0	0.0	0.15	12.1	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_29	PF13551.6	gi|257053971|ref|YP_003131804.1|	-	0.11	12.5	0.0	1	9.4	0.0	2.1	2	0	0	2	2	2	0	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|257053971|ref|YP_003131804.1|	-	0.13	12.1	0.0	0.33	10.8	0.0	1.7	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_Tnp_1	PF01527.20	gi|257053971|ref|YP_003131804.1|	-	0.16	12.3	0.0	0.41	11.0	0.0	1.7	1	0	0	1	1	1	0	Transposase
Band_7	PF01145.25	gi|257053972|ref|YP_003131805.1|	-	1.1e-37	129.8	3.6	1.1e-37	129.8	3.6	1.9	2	0	0	2	2	2	1	SPFH	domain	/	Band	7	family
Band_7_1	PF13421.6	gi|257053972|ref|YP_003131805.1|	-	0.00098	18.9	0.2	0.002	17.9	0.2	1.5	1	0	0	1	1	1	1	SPFH	domain-Band	7	family
NfeD	PF01957.18	gi|257053973|ref|YP_003131806.1|	-	1.3e-07	31.9	0.1	1.3e-07	31.9	0.1	1.7	2	0	0	2	2	2	1	NfeD-like	C-terminal,	partner-binding
DUF308	PF03729.13	gi|257053973|ref|YP_003131806.1|	-	0.023	15.0	6.8	0.023	15.0	6.8	2.0	2	0	0	2	2	2	0	Short	repeat	of	unknown	function	(DUF308)
PGPGW	PF09656.10	gi|257053973|ref|YP_003131806.1|	-	7.9	6.1	16.1	34	4.1	0.0	3.2	3	1	0	3	3	3	0	Putative	transmembrane	protein	(PGPGW)
COPI_C	PF06957.11	gi|257053974|ref|YP_003131807.1|	-	2.3	6.9	4.1	2.3	6.9	4.1	1.0	1	0	0	1	1	1	0	Coatomer	(COPI)	alpha	subunit	C-terminus
tRNA-synt_1g	PF09334.11	gi|257053975|ref|YP_003131808.1|	-	5.7e-137	456.6	0.0	7.2e-137	456.3	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(M)
tRNA_bind	PF01588.20	gi|257053975|ref|YP_003131808.1|	-	1.3e-20	73.3	0.0	2.1e-20	72.6	0.0	1.4	1	0	0	1	1	1	1	Putative	tRNA	binding	domain
tRNA-synt_1	PF00133.22	gi|257053975|ref|YP_003131808.1|	-	2.6e-13	49.1	0.2	2.1e-07	29.6	0.2	2.8	2	1	0	2	2	2	2	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.13	gi|257053975|ref|YP_003131808.1|	-	1.2e-08	35.1	0.0	2.6e-08	33.9	0.0	1.5	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1e	PF01406.19	gi|257053975|ref|YP_003131808.1|	-	8.9e-08	31.8	0.0	9.9e-05	21.8	0.0	2.2	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1f	PF01921.18	gi|257053975|ref|YP_003131808.1|	-	7.2e-05	21.9	0.7	0.85	8.5	0.0	3.3	2	1	0	3	3	3	3	tRNA	synthetases	class	I	(K)
tRNA-synt_1d	PF00750.19	gi|257053975|ref|YP_003131808.1|	-	0.035	13.1	0.0	0.12	11.3	0.0	1.8	2	0	0	2	2	2	0	tRNA	synthetases	class	I	(R)
DUF2154	PF09922.9	gi|257053976|ref|YP_003131809.1|	-	1.5e-10	41.0	0.0	3.8e-10	39.6	0.0	1.8	2	0	0	2	2	2	1	Cell	wall-active	antibiotics	response	4TMS	YvqF
PG_binding_1	PF01471.18	gi|257053977|ref|YP_003131810.1|	-	8.2e-16	58.0	0.4	1.9e-15	56.8	0.4	1.7	1	0	0	1	1	1	1	Putative	peptidoglycan	binding	domain
PG_binding_3	PF09374.10	gi|257053977|ref|YP_003131810.1|	-	0.0057	16.9	0.0	0.012	15.8	0.0	1.6	1	0	0	1	1	1	1	Predicted	Peptidoglycan	domain
Trypan_PARP	PF05887.11	gi|257053977|ref|YP_003131810.1|	-	0.54	10.2	23.8	0.079	12.9	18.4	2.4	2	0	0	2	2	2	0	Procyclic	acidic	repetitive	protein	(PARP)
NTP_transferase	PF00483.23	gi|257053978|ref|YP_003131811.1|	-	1.5e-40	139.4	0.0	2.1e-40	138.9	0.0	1.2	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|257053978|ref|YP_003131811.1|	-	1.9e-19	70.6	0.6	3.3e-19	69.8	0.6	1.4	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Hexapep	PF00132.24	gi|257053978|ref|YP_003131811.1|	-	2.2e-09	36.6	16.5	0.00045	19.8	0.5	4.7	3	1	3	6	6	6	5	Bacterial	transferase	hexapeptide	(six	repeats)
IspD	PF01128.19	gi|257053978|ref|YP_003131811.1|	-	7.4e-05	22.6	0.0	0.00012	21.9	0.0	1.3	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
DUF4954	PF16314.5	gi|257053978|ref|YP_003131811.1|	-	0.039	12.1	0.0	0.051	11.7	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4954)
Hexapep_2	PF14602.6	gi|257053978|ref|YP_003131811.1|	-	0.051	13.3	11.8	0.074	12.8	0.2	4.1	4	1	0	4	4	4	0	Hexapeptide	repeat	of	succinyl-transferase
CTP_transf_3	PF02348.19	gi|257053978|ref|YP_003131811.1|	-	0.067	13.1	0.0	0.1	12.5	0.0	1.2	1	0	0	1	1	1	0	Cytidylyltransferase
MMPL	PF03176.15	gi|257053979|ref|YP_003131812.1|	-	1.6e-38	132.5	43.8	5.8e-28	97.8	11.7	3.7	2	1	0	2	2	2	2	MMPL	family
Sterol-sensing	PF12349.8	gi|257053979|ref|YP_003131812.1|	-	5.4e-11	42.6	9.9	1.2e-05	25.2	1.0	2.6	2	0	0	2	2	2	2	Sterol-sensing	domain	of	SREBP	cleavage-activation
Patched	PF02460.18	gi|257053979|ref|YP_003131812.1|	-	7.4e-09	34.3	22.9	2.3e-06	26.0	3.2	2.7	2	1	0	2	2	2	2	Patched	family
SecD_SecF	PF02355.16	gi|257053979|ref|YP_003131812.1|	-	1.6e-05	24.4	21.5	0.00031	20.2	2.7	2.6	2	0	0	2	2	2	2	Protein	export	membrane	protein
ACR_tran	PF00873.19	gi|257053979|ref|YP_003131812.1|	-	0.00085	17.1	8.5	0.00085	17.1	8.5	3.1	3	1	1	4	4	4	2	AcrB/AcrD/AcrF	family
DUF3552	PF12072.8	gi|257053979|ref|YP_003131812.1|	-	0.0042	16.5	22.4	0.0046	16.4	4.8	2.5	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF3552)
APG6_N	PF17675.1	gi|257053979|ref|YP_003131812.1|	-	0.015	15.8	6.6	0.015	15.8	6.6	2.5	2	0	0	2	2	2	0	Apg6	coiled-coil	region
OmpH	PF03938.14	gi|257053979|ref|YP_003131812.1|	-	0.15	12.4	28.3	0.047	14.0	11.5	2.6	2	0	0	2	2	2	0	Outer	membrane	protein	(OmpH-like)
Spc7	PF08317.11	gi|257053979|ref|YP_003131812.1|	-	0.33	9.8	21.1	0.16	10.8	4.4	2.6	3	0	0	3	3	3	0	Spc7	kinetochore	protein
Atg14	PF10186.9	gi|257053979|ref|YP_003131812.1|	-	0.44	9.6	21.5	0.49	9.4	12.2	2.2	1	1	1	2	2	2	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
DUF16	PF01519.16	gi|257053979|ref|YP_003131812.1|	-	0.64	10.5	12.5	0.52	10.8	0.6	3.1	1	1	1	2	2	2	0	Protein	of	unknown	function	DUF16
CEP209_CC5	PF16574.5	gi|257053979|ref|YP_003131812.1|	-	1.7	8.8	11.6	0.12	12.5	2.6	2.4	2	0	0	2	2	2	0	Coiled-coil	region	of	centrosome	protein	CE290
AIP3	PF03915.13	gi|257053979|ref|YP_003131812.1|	-	1.9	7.5	8.8	0.1	11.7	2.5	1.8	1	1	1	2	2	2	0	Actin	interacting	protein	3
AAA_9	PF12781.7	gi|257053979|ref|YP_003131812.1|	-	2	7.5	7.9	1.5	7.9	4.0	2.4	2	0	0	2	2	2	0	ATP-binding	dynein	motor	region
SWIRM-assoc_1	PF16495.5	gi|257053979|ref|YP_003131812.1|	-	2.4	8.2	12.8	0.11	12.5	6.4	2.0	2	0	0	2	2	2	0	SWIRM-associated	region	1
Syntaxin-6_N	PF09177.11	gi|257053979|ref|YP_003131812.1|	-	2.8	8.5	9.3	0.33	11.5	2.2	2.5	2	0	0	2	2	2	0	Syntaxin	6,	N-terminal
DUF2500	PF10694.9	gi|257053979|ref|YP_003131812.1|	-	3.1	8.4	6.2	4.6	7.8	0.4	3.1	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF2500)
Fmp27_WPPW	PF10359.9	gi|257053979|ref|YP_003131812.1|	-	4	6.2	8.2	33	3.2	6.1	2.1	2	0	0	2	2	2	0	RNA	pol	II	promoter	Fmp27	protein	domain
LapA_dom	PF06305.11	gi|257053979|ref|YP_003131812.1|	-	5.2	7.0	8.3	18	5.2	3.7	4.0	2	0	0	2	2	2	0	Lipopolysaccharide	assembly	protein	A	domain
DUF2203	PF09969.9	gi|257053979|ref|YP_003131812.1|	-	6.4	7.5	9.3	4.2	8.1	2.6	2.7	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2203)
IFT57	PF10498.9	gi|257053979|ref|YP_003131812.1|	-	8.8	5.2	12.1	2.2	7.2	3.8	2.2	2	0	0	2	2	2	0	Intra-flagellar	transport	protein	57
KASH_CCD	PF14662.6	gi|257053979|ref|YP_003131812.1|	-	9.9	5.9	21.6	2.3	8.0	3.7	2.7	3	0	0	3	3	2	0	Coiled-coil	region	of	CCDC155	or	KASH
TetR_C_6	PF13977.6	gi|257053980|ref|YP_003131813.1|	-	8.1e-15	55.0	2.4	8.1e-15	55.0	2.4	1.5	2	0	0	2	2	2	1	BetI-type	transcriptional	repressor,	C-terminal
TetR_N	PF00440.23	gi|257053980|ref|YP_003131813.1|	-	1.1e-08	34.7	0.1	1.9e-08	34.0	0.1	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
TetR_C_24	PF17932.1	gi|257053980|ref|YP_003131813.1|	-	0.00088	19.5	0.1	0.0019	18.5	0.1	1.5	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_27	PF17935.1	gi|257053980|ref|YP_003131813.1|	-	0.0079	16.2	0.6	0.036	14.1	0.6	2.1	1	1	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_31	PF17940.1	gi|257053980|ref|YP_003131813.1|	-	0.037	14.2	5.3	0.04	14.1	2.2	2.2	1	1	1	2	2	2	0	Tetracyclin	repressor-like,	C-terminal	domain
tRNA-synt_1	PF00133.22	gi|257053981|ref|YP_003131814.1|	-	1.3e-61	208.7	0.0	4.1e-26	91.4	0.2	4.8	2	2	2	4	4	4	4	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1_2	PF13603.6	gi|257053981|ref|YP_003131814.1|	-	1.6e-57	194.0	0.0	2.5e-57	193.4	0.0	1.3	1	0	0	1	1	1	1	Leucyl-tRNA	synthetase,	Domain	2
tRNA-synt_1g	PF09334.11	gi|257053981|ref|YP_003131814.1|	-	1.3e-33	116.3	0.0	1.8e-26	92.9	0.0	4.0	4	0	0	4	4	4	3	tRNA	synthetases	class	I	(M)
Anticodon_1	PF08264.13	gi|257053981|ref|YP_003131814.1|	-	2e-12	47.3	0.0	5e-12	46.0	0.0	1.7	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
DZR	PF12773.7	gi|257053981|ref|YP_003131814.1|	-	0.00043	20.2	2.3	0.25	11.4	0.2	2.6	2	0	0	2	2	2	2	Double	zinc	ribbon
tRNA-synt_1f	PF01921.18	gi|257053981|ref|YP_003131814.1|	-	0.0037	16.2	0.0	0.3	10.0	0.0	2.8	2	1	0	2	2	2	1	tRNA	synthetases	class	I	(K)
tRNA-synt_1e	PF01406.19	gi|257053981|ref|YP_003131814.1|	-	0.011	15.1	0.0	1.4	8.2	0.0	2.2	2	0	0	2	2	2	0	tRNA	synthetases	class	I	(C)	catalytic	domain
zinc_ribbon_15	PF17032.5	gi|257053981|ref|YP_003131814.1|	-	0.014	16.1	0.1	8.7	7.2	0.0	2.4	2	0	0	2	2	2	0	zinc-ribbon	family
Zn-ribbon_8	PF09723.10	gi|257053981|ref|YP_003131814.1|	-	0.021	14.9	2.6	0.44	10.7	0.1	3.5	3	0	0	3	3	3	0	Zinc	ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|257053981|ref|YP_003131814.1|	-	0.053	13.1	6.5	5.8	6.5	0.1	3.8	3	0	0	3	3	3	0	TFIIB	zinc-binding
IBR	PF01485.21	gi|257053981|ref|YP_003131814.1|	-	0.098	12.9	0.9	1.4	9.2	0.0	2.6	2	1	1	3	3	3	0	IBR	domain,	a	half	RING-finger	domain
DNA_ligase_ZBD	PF03119.16	gi|257053981|ref|YP_003131814.1|	-	0.21	11.6	0.0	0.21	11.6	0.0	3.4	3	1	0	3	3	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-ribbon_3	PF13248.6	gi|257053981|ref|YP_003131814.1|	-	0.25	10.8	6.0	5.8	6.5	0.1	3.9	4	0	0	4	4	4	0	zinc-ribbon	domain
CpXC	PF14353.6	gi|257053981|ref|YP_003131814.1|	-	1.6	8.8	4.2	1.8	8.6	0.5	2.5	2	1	0	2	2	2	0	CpXC	protein
Lactamase_B_2	PF12706.7	gi|257053982|ref|YP_003131815.1|	-	3.9e-20	72.2	2.9	5e-20	71.9	2.9	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|257053982|ref|YP_003131815.1|	-	6.7e-12	45.8	6.7	8.8e-12	45.4	6.2	1.5	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_3	PF13483.6	gi|257053982|ref|YP_003131815.1|	-	0.003	17.5	0.1	0.0053	16.7	0.1	1.5	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_6	PF16661.5	gi|257053982|ref|YP_003131815.1|	-	0.013	14.9	0.1	0.021	14.3	0.1	1.2	1	0	0	1	1	1	0	Metallo-beta-lactamase	superfamily	domain
Putative_PNPOx	PF01243.20	gi|257053983|ref|YP_003131816.1|	-	3e-16	59.4	0.0	3.8e-16	59.0	0.0	1.1	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyrid_ox_like	PF16242.5	gi|257053983|ref|YP_003131816.1|	-	2.3e-06	27.3	0.0	2.8e-06	27.0	0.0	1.1	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase	like
HATPase_c	PF02518.26	gi|257053984|ref|YP_003131817.1|	-	5.2e-13	49.5	0.0	9e-13	48.7	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
GAF_3	PF13492.6	gi|257053984|ref|YP_003131817.1|	-	5.5e-07	30.0	0.2	9e-07	29.3	0.2	1.4	1	0	0	1	1	1	1	GAF	domain
GAF_2	PF13185.6	gi|257053984|ref|YP_003131817.1|	-	1.1e-06	28.9	0.8	2.6e-06	27.8	0.8	1.6	1	0	0	1	1	1	1	GAF	domain
SPOB_a	PF14689.6	gi|257053984|ref|YP_003131817.1|	-	8e-05	22.3	0.0	0.00029	20.5	0.0	2.0	1	0	0	1	1	1	1	Sensor_kinase_SpoOB-type,	alpha-helical	domain
HisKA	PF00512.25	gi|257053984|ref|YP_003131817.1|	-	0.00097	19.1	0.1	0.0047	16.9	0.0	2.1	1	1	1	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
HisKA_4TM	PF16926.5	gi|257053984|ref|YP_003131817.1|	-	0.0015	18.1	0.2	0.0024	17.4	0.2	1.4	1	0	0	1	1	1	1	Archaeal	4TM	region	of	histidine	kinase
5_3_exonuc	PF01367.20	gi|257053984|ref|YP_003131817.1|	-	0.0045	17.6	0.5	0.31	11.7	0.0	2.3	1	1	1	2	2	2	1	5'-3'	exonuclease,	C-terminal	SAM	fold
DUF1611_N	PF17396.2	gi|257053984|ref|YP_003131817.1|	-	0.05	13.8	0.1	0.32	11.3	0.0	2.4	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1611_N)	Rossmann-like	domain
Syntaxin-6_N	PF09177.11	gi|257053984|ref|YP_003131817.1|	-	0.11	13.0	0.2	0.72	10.4	0.0	2.1	2	0	0	2	2	2	0	Syntaxin	6,	N-terminal
DUF1949	PF09186.11	gi|257053984|ref|YP_003131817.1|	-	2.8	7.9	5.7	34	4.4	0.1	3.7	4	0	0	4	4	4	0	Domain	of	unknown	function	(DUF1949)
eRF1_1	PF03463.15	gi|257053985|ref|YP_003131818.1|	-	1.1e-26	93.4	0.0	1.6e-26	92.8	0.0	1.3	1	0	0	1	1	1	1	eRF1	domain	1
eRF1_3	PF03465.15	gi|257053985|ref|YP_003131818.1|	-	5.9e-23	81.5	0.4	2.8e-22	79.3	0.0	2.3	3	0	0	3	3	3	1	eRF1	domain	3
eRF1_2	PF03464.15	gi|257053985|ref|YP_003131818.1|	-	1.6e-07	31.7	0.0	1.5e-05	25.3	0.0	2.3	2	0	0	2	2	2	1	eRF1	domain	2
FolB	PF02152.18	gi|257053985|ref|YP_003131818.1|	-	0.18	12.4	2.7	0.55	10.8	0.4	2.3	2	0	0	2	2	2	0	Dihydroneopterin	aldolase
HTH_20	PF12840.7	gi|257053986|ref|YP_003131819.1|	-	1.1e-06	28.5	0.0	2.8e-06	27.3	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
Elf1	PF05129.13	gi|257053986|ref|YP_003131819.1|	-	0.0073	16.3	0.1	2	8.5	0.1	2.4	2	0	0	2	2	2	1	Transcription	elongation	factor	Elf1	like
YABBY	PF04690.13	gi|257053986|ref|YP_003131819.1|	-	0.11	13.1	0.0	0.23	12.0	0.0	1.5	1	0	0	1	1	1	0	YABBY	protein
DZR	PF12773.7	gi|257053986|ref|YP_003131819.1|	-	0.19	11.8	1.7	1.1	9.4	0.2	2.5	3	0	0	3	3	3	0	Double	zinc	ribbon
zf-TFIIB	PF13453.6	gi|257053986|ref|YP_003131819.1|	-	0.3	10.5	6.5	0.45	9.9	0.7	2.5	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
zf-ribbon_3	PF13248.6	gi|257053986|ref|YP_003131819.1|	-	0.37	10.3	6.4	6	6.4	0.1	3.4	3	0	0	3	3	3	0	zinc-ribbon	domain
Anti-TRAP	PF15777.5	gi|257053986|ref|YP_003131819.1|	-	0.65	10.0	6.5	1	9.4	0.4	3.1	3	0	0	3	3	3	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
HypA	PF01155.19	gi|257053986|ref|YP_003131819.1|	-	1.4	9.0	3.1	1.3	9.1	0.1	2.4	2	1	1	3	3	3	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf_Rg	PF17915.1	gi|257053986|ref|YP_003131819.1|	-	7.1	6.1	6.2	8.4	5.9	2.5	2.6	2	1	0	2	2	2	0	Reverse	gyrase	zinc	finger
CpXC	PF14353.6	gi|257053986|ref|YP_003131819.1|	-	8.6	6.4	7.0	7.1	6.7	0.1	3.4	3	2	1	4	4	4	0	CpXC	protein
Peptidase_M23	PF01551.22	gi|257053987|ref|YP_003131820.1|	-	9.8e-16	57.8	0.3	3.4e-15	56.0	0.0	2.0	2	0	0	2	2	2	1	Peptidase	family	M23
RnfC_N	PF13375.6	gi|257053987|ref|YP_003131820.1|	-	0.31	11.0	1.1	2.5	8.1	0.0	2.8	2	1	0	3	3	3	0	RnfC	Barrel	sandwich	hybrid	domain
Caroten_synth	PF04240.12	gi|257053988|ref|YP_003131821.1|	-	1.5e-15	57.7	23.6	1.5e-15	57.7	23.6	2.0	1	1	1	2	2	2	1	Carotenoid	biosynthesis	protein
FbpA	PF05833.11	gi|257053989|ref|YP_003131822.1|	-	9.9e-84	281.7	0.0	1.3e-83	281.3	0.0	1.1	1	0	0	1	1	1	1	Fibronectin-binding	protein	A	N-terminus	(FbpA)
NFACT-R_1	PF05670.13	gi|257053989|ref|YP_003131822.1|	-	2e-24	86.3	0.0	3.2e-24	85.7	0.0	1.4	1	0	0	1	1	1	1	NFACT	protein	RNA	binding	domain
NFACT-R_2	PF18297.1	gi|257053989|ref|YP_003131822.1|	-	0.0075	16.4	0.0	0.023	14.9	0.0	1.8	1	0	0	1	1	1	1	NFACT	protein	RNA	binding	domain
TraG_N	PF07916.11	gi|257053990|ref|YP_003131823.1|	-	0.098	11.5	0.5	0.1	11.4	0.5	1.1	1	0	0	1	1	1	0	TraG-like	protein,	N-terminal	region
PetG	PF02529.15	gi|257053990|ref|YP_003131823.1|	-	0.87	9.5	0.1	0.87	9.5	0.1	2.2	2	0	0	2	2	2	0	Cytochrome	B6-F	complex	subunit	5
Radical_SAM	PF04055.21	gi|257053991|ref|YP_003131824.1|	-	2.4e-25	89.9	0.0	6.3e-25	88.5	0.0	1.8	1	0	0	1	1	1	1	Radical	SAM	superfamily
Radical_SAM_C	PF16199.5	gi|257053991|ref|YP_003131824.1|	-	8e-23	80.3	0.0	1.4e-22	79.5	0.0	1.4	1	0	0	1	1	1	1	Radical_SAM	C-terminal	domain
Acetyltransf_1	PF00583.25	gi|257053991|ref|YP_003131824.1|	-	7.2e-07	29.4	0.1	1.6e-06	28.3	0.1	1.6	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|257053991|ref|YP_003131824.1|	-	0.0013	18.7	0.0	0.0026	17.7	0.0	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
tRNA_anti-codon	PF01336.25	gi|257053992|ref|YP_003131825.1|	-	8.8e-12	44.9	0.2	3.7e-11	42.8	0.2	2.0	2	0	0	2	2	2	1	OB-fold	nucleic	acid	binding	domain
S1	PF00575.23	gi|257053992|ref|YP_003131825.1|	-	1.6e-09	38.0	0.1	6.7e-09	36.0	0.0	2.3	3	0	0	3	3	3	1	S1	RNA	binding	domain
tRNA_anti_2	PF13742.6	gi|257053992|ref|YP_003131825.1|	-	0.00017	21.7	0.0	0.00043	20.4	0.0	1.7	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
S1_2	PF13509.6	gi|257053992|ref|YP_003131825.1|	-	0.011	15.7	0.0	0.028	14.5	0.0	1.7	1	0	0	1	1	1	0	S1	domain
Yip1	PF04893.17	gi|257053993|ref|YP_003131826.1|	-	4.1e-09	36.4	11.8	8.9e-09	35.3	11.8	1.5	1	1	0	1	1	1	1	Yip1	domain
FMN_red	PF03358.15	gi|257053994|ref|YP_003131827.1|	-	1.7e-35	122.0	0.0	2.3e-35	121.6	0.0	1.2	1	0	0	1	1	1	1	NADPH-dependent	FMN	reductase
Flavodoxin_2	PF02525.17	gi|257053994|ref|YP_003131827.1|	-	1.1e-10	41.5	0.0	2.3e-10	40.5	0.0	1.5	2	0	0	2	2	2	1	Flavodoxin-like	fold
Flavodoxin_5	PF12724.7	gi|257053994|ref|YP_003131827.1|	-	0.085	13.1	0.0	0.18	12.0	0.0	1.7	1	1	0	1	1	1	0	Flavodoxin	domain
Aminotran_4	PF01063.19	gi|257053995|ref|YP_003131828.1|	-	2.5e-46	158.3	0.0	2.9e-46	158.1	0.0	1.1	1	0	0	1	1	1	1	Amino-transferase	class	IV
HTH_23	PF13384.6	gi|257053996|ref|YP_003131829.1|	-	1.8e-08	33.9	1.0	4.3e-08	32.7	1.0	1.7	1	1	0	1	1	1	1	Homeodomain-like	domain
HTH_28	PF13518.6	gi|257053996|ref|YP_003131829.1|	-	5.2e-06	26.5	0.2	8.3e-06	25.8	0.2	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_29	PF13551.6	gi|257053996|ref|YP_003131829.1|	-	2.3e-05	24.3	0.1	3e-05	23.9	0.1	1.3	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_11	PF08279.12	gi|257053996|ref|YP_003131829.1|	-	9.1e-05	22.3	0.1	0.00014	21.7	0.1	1.2	1	0	0	1	1	1	1	HTH	domain
HTH_24	PF13412.6	gi|257053996|ref|YP_003131829.1|	-	0.00017	21.1	0.0	0.00028	20.4	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_7	PF02796.15	gi|257053996|ref|YP_003131829.1|	-	0.00021	21.3	0.0	0.0003	20.8	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
Sigma70_r4_2	PF08281.12	gi|257053996|ref|YP_003131829.1|	-	0.00064	19.3	0.1	0.00088	18.9	0.1	1.2	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_31	PF13560.6	gi|257053996|ref|YP_003131829.1|	-	0.00072	19.9	0.7	0.0009	19.5	0.7	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
GerE	PF00196.19	gi|257053996|ref|YP_003131829.1|	-	0.00088	18.8	0.0	0.0013	18.3	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	luxR	family
Sigma70_r3	PF04539.16	gi|257053996|ref|YP_003131829.1|	-	0.0012	18.8	0.1	0.0018	18.3	0.1	1.3	1	0	0	1	1	1	1	Sigma-70	region	3
Sigma70_r4	PF04545.16	gi|257053996|ref|YP_003131829.1|	-	0.0013	18.2	0.1	0.0021	17.6	0.1	1.3	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_IclR	PF09339.10	gi|257053996|ref|YP_003131829.1|	-	0.0013	18.5	0.1	0.0018	18.1	0.1	1.2	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_Tnp_ISL3	PF13542.6	gi|257053996|ref|YP_003131829.1|	-	0.002	17.5	0.4	0.0027	17.1	0.4	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_10	PF04967.12	gi|257053996|ref|YP_003131829.1|	-	0.0024	17.6	0.1	0.0045	16.7	0.1	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_20	PF12840.7	gi|257053996|ref|YP_003131829.1|	-	0.0031	17.5	0.1	0.0053	16.8	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_3	PF01381.22	gi|257053996|ref|YP_003131829.1|	-	0.0046	17.0	0.0	0.0076	16.3	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix
RepB	PF07506.11	gi|257053996|ref|YP_003131829.1|	-	0.011	15.8	0.1	0.013	15.6	0.1	1.1	1	0	0	1	1	1	0	RepB	plasmid	partitioning	protein
HTH_Mga	PF08280.11	gi|257053996|ref|YP_003131829.1|	-	0.012	15.6	0.0	0.016	15.2	0.0	1.2	1	0	0	1	1	1	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
Phage_NinH	PF06322.11	gi|257053996|ref|YP_003131829.1|	-	0.015	15.2	0.2	0.02	14.7	0.2	1.2	1	0	0	1	1	1	0	Phage	NinH	protein
HTH_30	PF13556.6	gi|257053996|ref|YP_003131829.1|	-	0.02	14.7	0.4	0.081	12.7	0.2	1.9	2	0	0	2	2	2	0	PucR	C-terminal	helix-turn-helix	domain
TrmB	PF01978.19	gi|257053996|ref|YP_003131829.1|	-	0.021	14.7	0.2	0.068	13.1	0.1	1.7	1	1	1	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_AsnC-type	PF13404.6	gi|257053996|ref|YP_003131829.1|	-	0.025	14.4	0.2	0.04	13.8	0.2	1.3	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
FaeA	PF04703.12	gi|257053996|ref|YP_003131829.1|	-	0.036	14.5	0.0	0.047	14.1	0.0	1.2	1	0	0	1	1	1	0	FaeA-like	protein
HTH_17	PF12728.7	gi|257053996|ref|YP_003131829.1|	-	0.046	13.9	0.1	0.07	13.3	0.1	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
Sigma70_ECF	PF07638.11	gi|257053996|ref|YP_003131829.1|	-	0.054	13.4	0.0	0.066	13.1	0.0	1.1	1	0	0	1	1	1	0	ECF	sigma	factor
HTH_5	PF01022.20	gi|257053996|ref|YP_003131829.1|	-	0.071	13.0	0.0	0.11	12.4	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_38	PF13936.6	gi|257053996|ref|YP_003131829.1|	-	0.075	12.8	0.4	0.1	12.4	0.4	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_26	PF13443.6	gi|257053996|ref|YP_003131829.1|	-	0.09	13.2	0.0	0.13	12.7	0.0	1.2	1	0	0	1	1	1	0	Cro/C1-type	HTH	DNA-binding	domain
PAX	PF00292.18	gi|257053996|ref|YP_003131829.1|	-	0.09	12.7	0.0	0.11	12.4	0.0	1.1	1	0	0	1	1	1	0	'Paired	box'	domain
GntR	PF00392.21	gi|257053996|ref|YP_003131829.1|	-	0.11	12.2	0.1	0.22	11.2	0.1	1.5	1	1	1	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
Terminase_5	PF06056.12	gi|257053996|ref|YP_003131829.1|	-	0.11	12.3	0.3	0.24	11.3	0.0	1.7	2	0	0	2	2	2	0	Putative	ATPase	subunit	of	terminase	(gpP-like)
HTH_8	PF02954.19	gi|257053996|ref|YP_003131829.1|	-	0.12	12.2	0.3	0.18	11.6	0.3	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	Fis	family
ABC_membrane	PF00664.23	gi|257053997|ref|YP_003131830.1|	-	7.7e-45	153.7	2.1	9.8e-45	153.3	2.1	1.1	1	0	0	1	1	1	1	ABC	transporter	transmembrane	region
ABC_tran	PF00005.27	gi|257053997|ref|YP_003131830.1|	-	5.9e-35	120.8	0.0	1.1e-34	119.9	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
SMC_N	PF02463.19	gi|257053997|ref|YP_003131830.1|	-	0.00031	20.3	0.0	0.0051	16.3	0.0	1.9	1	1	1	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
ACR_tran	PF00873.19	gi|257053997|ref|YP_003131830.1|	-	0.0022	15.8	0.1	0.0033	15.1	0.1	1.2	1	0	0	1	1	1	1	AcrB/AcrD/AcrF	family
AAA_24	PF13479.6	gi|257053997|ref|YP_003131830.1|	-	0.0024	17.6	0.0	0.0045	16.7	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
TsaE	PF02367.17	gi|257053997|ref|YP_003131830.1|	-	0.0062	16.5	0.0	0.014	15.4	0.0	1.5	1	0	0	1	1	1	1	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_16	PF13191.6	gi|257053997|ref|YP_003131830.1|	-	0.011	16.1	0.3	0.032	14.6	0.3	1.8	1	1	0	1	1	1	0	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|257053997|ref|YP_003131830.1|	-	0.013	15.4	0.0	0.032	14.1	0.0	1.6	2	0	0	2	2	1	0	RsgA	GTPase
AAA_33	PF13671.6	gi|257053997|ref|YP_003131830.1|	-	0.014	15.5	0.0	0.032	14.4	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_22	PF13401.6	gi|257053997|ref|YP_003131830.1|	-	0.018	15.3	0.0	0.054	13.8	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
AAA	PF00004.29	gi|257053997|ref|YP_003131830.1|	-	0.018	15.4	0.0	0.099	13.1	0.0	2.3	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_21	PF13304.6	gi|257053997|ref|YP_003131830.1|	-	0.022	14.6	0.2	0.12	12.2	0.0	2.3	2	0	0	2	2	2	0	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
Zeta_toxin	PF06414.12	gi|257053997|ref|YP_003131830.1|	-	0.026	13.8	0.0	0.06	12.6	0.0	1.5	1	0	0	1	1	1	0	Zeta	toxin
DUF2107	PF09880.9	gi|257053997|ref|YP_003131830.1|	-	0.028	14.5	0.5	0.074	13.2	0.5	1.6	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2107)
AAA_18	PF13238.6	gi|257053997|ref|YP_003131830.1|	-	0.053	14.1	0.1	0.33	11.5	0.1	2.1	1	1	0	1	1	1	0	AAA	domain
Csd3_N	PF18059.1	gi|257053997|ref|YP_003131830.1|	-	0.057	13.9	0.0	0.13	12.8	0.0	1.5	1	0	0	1	1	1	0	Csd3	N-terminal
DUF87	PF01935.17	gi|257053997|ref|YP_003131830.1|	-	0.11	12.6	0.0	0.23	11.5	0.0	1.4	1	0	0	1	1	1	0	Helicase	HerA,	central	domain
AAA_5	PF07728.14	gi|257053997|ref|YP_003131830.1|	-	0.12	12.4	0.1	0.63	10.0	0.0	2.3	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_23	PF13476.6	gi|257053997|ref|YP_003131830.1|	-	0.16	12.4	0.0	0.3	11.5	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
PRA1	PF03208.19	gi|257053997|ref|YP_003131830.1|	-	2.4	7.8	8.7	1.5	8.4	4.2	2.8	2	1	1	3	3	3	0	PRA1	family	protein
AbiEii	PF08843.11	gi|257053998|ref|YP_003131831.1|	-	2.3e-38	132.5	0.2	2.8e-38	132.2	0.2	1.0	1	0	0	1	1	1	1	Nucleotidyl	transferase	AbiEii	toxin,	Type	IV	TA	system
AbiEi_1	PF09407.10	gi|257053999|ref|YP_003131832.1|	-	2.6e-09	37.6	0.0	5.1e-09	36.6	0.0	1.4	1	0	0	1	1	1	1	AbiEi	antitoxin	C-terminal	domain
AbiEi_4	PF13338.6	gi|257053999|ref|YP_003131832.1|	-	6.1e-07	29.5	0.7	4.8e-06	26.6	0.1	2.5	3	0	0	3	3	3	1	Transcriptional	regulator,	AbiEi	antitoxin
TrmB	PF01978.19	gi|257053999|ref|YP_003131832.1|	-	0.00076	19.3	0.0	0.0018	18.1	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|257053999|ref|YP_003131832.1|	-	0.0041	17.0	0.0	0.0081	16.0	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.10	gi|257053999|ref|YP_003131832.1|	-	0.011	15.6	0.0	0.021	14.6	0.0	1.6	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
Rrf2	PF02082.20	gi|257053999|ref|YP_003131832.1|	-	0.012	15.9	0.0	0.031	14.6	0.0	1.6	1	0	0	1	1	1	0	Transcriptional	regulator
MarR	PF01047.22	gi|257053999|ref|YP_003131832.1|	-	0.039	13.9	0.0	0.12	12.3	0.0	1.8	2	0	0	2	2	2	0	MarR	family
HTH_Crp_2	PF13545.6	gi|257053999|ref|YP_003131832.1|	-	0.048	13.6	0.0	0.14	12.2	0.0	1.8	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HhH-GPD	PF00730.25	gi|257054000|ref|YP_003131833.1|	-	8.2e-17	61.6	0.0	1.8e-16	60.5	0.0	1.5	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH	PF00633.23	gi|257054000|ref|YP_003131833.1|	-	1.9e-09	36.9	0.1	3.1e-08	33.1	0.0	2.4	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
DUF596	PF04591.12	gi|257054000|ref|YP_003131833.1|	-	0.11	12.6	0.7	5	7.3	0.0	2.5	1	1	1	2	2	2	0	Protein	of	unknown	function,	DUF596
HAMP_N3	PF18575.1	gi|257054000|ref|YP_003131833.1|	-	0.15	11.6	0.0	3.4	7.3	0.0	2.3	2	0	0	2	2	2	0	HAMP	N-terminal	domain	3
PadR	PF03551.14	gi|257054002|ref|YP_003131835.1|	-	2.4e-18	65.9	2.0	2.9e-18	65.6	2.0	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
DUF1495	PF07381.11	gi|257054002|ref|YP_003131835.1|	-	0.0014	18.4	0.0	0.0022	17.8	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain	(DUF1495)
HTH_45	PF14947.6	gi|257054002|ref|YP_003131835.1|	-	0.012	15.6	0.0	0.015	15.2	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix
HTH_27	PF13463.6	gi|257054002|ref|YP_003131835.1|	-	0.017	15.6	0.1	0.022	15.3	0.1	1.3	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
MarR_2	PF12802.7	gi|257054002|ref|YP_003131835.1|	-	0.023	14.6	0.2	1.7	8.6	0.0	2.4	3	0	0	3	3	3	0	MarR	family
DUF4364	PF14277.6	gi|257054002|ref|YP_003131835.1|	-	0.072	12.8	0.0	0.081	12.7	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
HTH_34	PF13601.6	gi|257054002|ref|YP_003131835.1|	-	0.14	12.4	0.0	0.15	12.2	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Penicillinase_R	PF03965.16	gi|257054002|ref|YP_003131835.1|	-	0.18	12.2	0.1	0.2	12.0	0.1	1.2	1	0	0	1	1	1	0	Penicillinase	repressor
HypA	PF01155.19	gi|257054003|ref|YP_003131836.1|	-	0.0073	16.3	0.8	0.013	15.6	0.8	1.4	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
TF_Zn_Ribbon	PF08271.12	gi|257054003|ref|YP_003131836.1|	-	0.01	15.4	2.7	0.024	14.1	2.7	1.7	1	0	0	1	1	1	1	TFIIB	zinc-binding
Zn-ribbon_8	PF09723.10	gi|257054003|ref|YP_003131836.1|	-	0.038	14.1	1.2	0.12	12.6	1.2	1.8	1	0	0	1	1	1	0	Zinc	ribbon	domain
DZR	PF12773.7	gi|257054003|ref|YP_003131836.1|	-	0.06	13.4	0.4	0.12	12.4	0.4	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
TFIIS_C	PF01096.18	gi|257054003|ref|YP_003131836.1|	-	0.091	12.6	1.6	7.1	6.6	0.8	2.3	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
FYVE_2	PF02318.16	gi|257054003|ref|YP_003131836.1|	-	0.1	12.8	0.1	3.9	7.7	0.1	2.2	2	0	0	2	2	2	0	FYVE-type	zinc	finger
DUF1451	PF07295.11	gi|257054003|ref|YP_003131836.1|	-	0.11	12.5	1.6	0.17	11.9	0.4	1.9	2	0	0	2	2	2	0	Zinc-ribbon	containing	domain
Zn_Tnp_IS91	PF14319.6	gi|257054003|ref|YP_003131836.1|	-	0.12	12.4	0.3	0.22	11.6	0.3	1.4	1	0	0	1	1	1	0	Transposase	zinc-binding	domain
AAA_34	PF13872.6	gi|257054003|ref|YP_003131836.1|	-	0.14	11.0	0.0	0.38	9.6	0.0	1.6	2	0	0	2	2	2	0	P-loop	containing	NTP	hydrolase	pore-1
OrfB_Zn_ribbon	PF07282.11	gi|257054003|ref|YP_003131836.1|	-	0.25	11.3	1.9	0.55	10.2	1.9	1.6	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Zn_Tnp_IS1595	PF12760.7	gi|257054003|ref|YP_003131836.1|	-	0.28	11.2	3.5	6.8	6.8	0.3	2.5	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
zf-IS66	PF13005.7	gi|257054003|ref|YP_003131836.1|	-	0.54	10.7	3.6	3.8	8.0	0.7	2.8	2	1	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
zf-ribbon_3	PF13248.6	gi|257054003|ref|YP_003131836.1|	-	0.85	9.1	3.2	6.8	6.3	0.2	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
PhnA_Zn_Ribbon	PF08274.12	gi|257054003|ref|YP_003131836.1|	-	1.6	8.8	4.8	1.1	9.3	2.5	1.8	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
DNA_RNApol_7kD	PF03604.13	gi|257054003|ref|YP_003131836.1|	-	1.6	8.5	4.0	1.5	8.5	1.7	2.1	2	1	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
THF_DHG_CYH_C	PF02882.19	gi|257054004|ref|YP_003131837.1|	-	4.2e-66	221.2	0.9	5.9e-66	220.7	0.9	1.2	1	0	0	1	1	1	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
THF_DHG_CYH	PF00763.23	gi|257054004|ref|YP_003131837.1|	-	8.3e-37	126.0	0.7	1.2e-36	125.5	0.7	1.2	1	0	0	1	1	1	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	catalytic	domain
OrfB_IS605	PF01385.19	gi|257054006|ref|YP_003131839.1|	-	2.6e-26	92.2	0.1	4.4e-26	91.5	0.1	1.3	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|257054006|ref|YP_003131839.1|	-	1.2e-16	60.3	0.5	2.5e-16	59.4	0.5	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
SHMT	PF00464.19	gi|257054008|ref|YP_003131841.1|	-	3.1e-150	500.2	0.0	3.7e-150	500.0	0.0	1.0	1	0	0	1	1	1	1	Serine	hydroxymethyltransferase
Aminotran_1_2	PF00155.21	gi|257054008|ref|YP_003131841.1|	-	1.6e-08	34.1	0.0	3.7e-08	32.9	0.0	1.4	1	1	0	1	1	1	1	Aminotransferase	class	I	and	II
Beta_elim_lyase	PF01212.21	gi|257054008|ref|YP_003131841.1|	-	0.00016	21.1	0.0	0.003	16.9	0.0	2.0	1	1	0	1	1	1	1	Beta-eliminating	lyase
DUF348	PF03990.14	gi|257054008|ref|YP_003131841.1|	-	0.085	12.6	0.1	0.31	10.8	0.0	2.0	2	0	0	2	2	2	0	G5-linked-Ubiquitin-like	domain
DegT_DnrJ_EryC1	PF01041.17	gi|257054008|ref|YP_003131841.1|	-	0.13	11.5	1.0	0.21	10.9	1.0	1.4	1	1	0	1	1	1	0	DegT/DnrJ/EryC1/StrS	aminotransferase	family
HydF_dimer	PF18128.1	gi|257054009|ref|YP_003131842.1|	-	0.1	12.7	0.7	0.34	11.0	0.2	2.0	2	0	0	2	2	2	0	Hydrogen	maturase	F	dimerization	domain
UL11	PF11094.8	gi|257054009|ref|YP_003131842.1|	-	0.11	12.3	2.2	0.12	12.3	0.1	2.1	2	0	0	2	2	2	0	Membrane-associated	tegument	protein
YcaO	PF02624.16	gi|257054010|ref|YP_003131843.1|	-	9.1e-54	182.9	5.9	9.1e-54	182.9	5.9	1.6	1	1	1	2	2	2	1	YcaO	cyclodehydratase,	ATP-ad	Mg2+-binding
TrbH	PF07283.11	gi|257054010|ref|YP_003131843.1|	-	0.0082	16.3	0.0	0.023	14.8	0.0	1.8	2	0	0	2	2	2	1	Conjugal	transfer	protein	TrbH
DUF63	PF01889.17	gi|257054011|ref|YP_003131844.1|	-	8e-34	118.1	10.8	3.6e-33	115.9	7.6	2.7	2	1	0	2	2	2	1	Membrane	protein	of	unknown	function	DUF63
Deltameth_res	PF16020.5	gi|257054011|ref|YP_003131844.1|	-	9.3	6.2	0.0	9.3	6.2	0.0	4.6	5	0	0	5	5	5	0	Deltamethrin	resistance
AMP-binding	PF00501.28	gi|257054012|ref|YP_003131845.1|	-	0.0035	16.0	0.0	0.51	8.9	0.0	2.3	3	0	0	3	3	3	2	AMP-binding	enzyme
DUF5391	PF17369.2	gi|257054013|ref|YP_003131846.1|	-	0.0039	17.2	1.4	0.0086	16.1	1.4	1.6	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF5391)
Tetraspanin	PF00335.20	gi|257054013|ref|YP_003131846.1|	-	0.0075	16.0	1.7	0.011	15.5	1.7	1.3	1	0	0	1	1	1	1	Tetraspanin	family
DUF5518	PF17647.1	gi|257054013|ref|YP_003131846.1|	-	0.33	11.1	24.5	0.054	13.7	17.7	2.8	2	1	0	2	2	2	0	Family	of	unknown	function	(DUF5518)
Exosortase_EpsH	PF09721.10	gi|257054013|ref|YP_003131846.1|	-	0.61	9.6	18.7	0.47	9.9	17.5	1.3	1	1	0	1	1	1	0	Transmembrane	exosortase	(Exosortase_EpsH)
DUF2070	PF09843.9	gi|257054013|ref|YP_003131846.1|	-	5.2	5.2	7.3	6.3	5.0	7.3	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
DUF1129	PF06570.11	gi|257054013|ref|YP_003131846.1|	-	9.9	5.6	6.5	5.9	6.3	3.9	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1129)
Aldo_ket_red	PF00248.21	gi|257054014|ref|YP_003131847.1|	-	9.1e-54	182.6	0.0	8.7e-52	176.1	0.0	2.0	1	1	0	1	1	1	1	Aldo/keto	reductase	family
Trp_halogenase	PF04820.14	gi|257054015|ref|YP_003131848.1|	-	1.6e-14	53.6	2.1	7.6e-10	38.2	0.0	2.3	1	1	1	2	2	2	2	Tryptophan	halogenase
FAD_oxidored	PF12831.7	gi|257054015|ref|YP_003131848.1|	-	2.5e-12	46.9	6.2	1.1e-11	44.7	6.0	2.0	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
DAO	PF01266.24	gi|257054015|ref|YP_003131848.1|	-	2.7e-12	46.9	3.6	3.8e-06	26.7	0.1	2.2	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|257054015|ref|YP_003131848.1|	-	1.5e-10	40.8	6.4	1.5e-05	24.3	2.7	2.3	2	0	0	2	2	2	2	FAD	binding	domain
HI0933_like	PF03486.14	gi|257054015|ref|YP_003131848.1|	-	9.6e-08	31.1	0.2	9.8e-06	24.5	0.2	2.3	2	0	0	2	2	2	1	HI0933-like	protein
FAD_binding_3	PF01494.19	gi|257054015|ref|YP_003131848.1|	-	1.2e-07	31.3	4.7	1e-06	28.3	4.8	2.4	1	1	0	1	1	1	1	FAD	binding	domain
GIDA	PF01134.22	gi|257054015|ref|YP_003131848.1|	-	1.7e-07	30.7	0.1	2.5e-07	30.1	0.1	1.3	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
Lycopene_cycl	PF05834.12	gi|257054015|ref|YP_003131848.1|	-	2.7e-07	30.0	2.1	1.1e-06	28.0	2.1	2.0	1	1	0	1	1	1	1	Lycopene	cyclase	protein
Pyr_redox_2	PF07992.14	gi|257054015|ref|YP_003131848.1|	-	5.4e-07	29.1	3.1	1.6e-06	27.6	1.3	2.4	2	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|257054015|ref|YP_003131848.1|	-	0.00013	22.1	0.3	0.00049	20.3	0.2	2.1	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox	PF00070.27	gi|257054015|ref|YP_003131848.1|	-	0.00029	21.3	1.7	1	10.0	0.2	2.7	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.17	gi|257054015|ref|YP_003131848.1|	-	0.00043	19.6	0.4	0.0022	17.3	0.1	2.0	2	0	0	2	2	2	1	Thi4	family
AlaDh_PNT_C	PF01262.21	gi|257054015|ref|YP_003131848.1|	-	0.012	14.9	0.1	0.012	14.9	0.1	1.8	3	0	0	3	3	3	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
3HCDH_N	PF02737.18	gi|257054015|ref|YP_003131848.1|	-	0.018	14.9	0.0	0.039	13.8	0.0	1.7	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
GMC_oxred_N	PF00732.19	gi|257054015|ref|YP_003131848.1|	-	0.024	14.0	0.0	2.3	7.5	0.0	2.4	2	0	0	2	2	2	0	GMC	oxidoreductase
Pyr_redox_3	PF13738.6	gi|257054015|ref|YP_003131848.1|	-	0.024	13.9	0.3	0.59	9.3	0.1	2.1	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Ntox34	PF15606.6	gi|257054016|ref|YP_003131849.1|	-	0.15	12.2	0.2	3.9	7.6	0.0	2.8	3	0	0	3	3	3	0	Bacterial	toxin	34
polyprenyl_synt	PF00348.17	gi|257054017|ref|YP_003131850.1|	-	1.1e-45	155.7	0.0	1.5e-45	155.3	0.0	1.1	1	0	0	1	1	1	1	Polyprenyl	synthetase
LppA	PF16708.5	gi|257054017|ref|YP_003131850.1|	-	0.015	15.2	0.2	0.024	14.5	0.2	1.3	1	0	0	1	1	1	0	Lipoprotein	confined	to	pathogenic	Mycobacterium
Cyt_c_ox_IV	PF12270.8	gi|257054018|ref|YP_003131851.1|	-	0.24	11.5	3.8	0.29	11.3	3.1	1.5	1	1	0	1	1	1	0	Cytochrome	c	oxidase	subunit	IV
DUF485	PF04341.12	gi|257054019|ref|YP_003131852.1|	-	0.13	12.2	0.1	0.13	12.2	0.1	2.1	2	1	0	2	2	2	0	Protein	of	unknown	function,	DUF485
DUF4491	PF14898.6	gi|257054020|ref|YP_003131853.1|	-	4.2	7.9	6.1	1.5	9.3	0.2	2.7	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4491)
PcrB	PF01884.17	gi|257054021|ref|YP_003131854.1|	-	1.2e-28	100.1	0.0	4.6e-28	98.2	0.0	1.7	1	1	0	1	1	1	1	PcrB	family
His_biosynth	PF00977.21	gi|257054021|ref|YP_003131854.1|	-	0.00017	21.2	0.1	0.00028	20.4	0.1	1.3	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
NMO	PF03060.15	gi|257054021|ref|YP_003131854.1|	-	0.012	15.0	0.1	0.019	14.4	0.1	1.2	1	0	0	1	1	1	0	Nitronate	monooxygenase
baeRF_family10	PF18854.1	gi|257054021|ref|YP_003131854.1|	-	0.12	12.6	1.2	0.22	11.8	0.2	1.9	2	0	0	2	2	2	0	Bacterial	archaeo-eukaryotic	release	factor	family	10
DUF420	PF04238.12	gi|257054022|ref|YP_003131855.1|	-	8.5e-33	113.4	13.4	1.2e-32	112.9	13.4	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF420)
Cytochrom_B561	PF03188.16	gi|257054022|ref|YP_003131855.1|	-	0.019	15.1	12.9	0.19	11.9	4.9	2.2	1	1	1	2	2	2	0	Eukaryotic	cytochrome	b561
DUF1240	PF06836.12	gi|257054022|ref|YP_003131855.1|	-	0.44	11.1	2.8	1	10.0	0.4	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1240)
SpoIIIAC	PF06686.11	gi|257054022|ref|YP_003131855.1|	-	0.69	10.1	5.6	0.96	9.7	1.4	2.9	2	1	0	2	2	2	0	Stage	III	sporulation	protein	AC/AD	protein	family
SPC25	PF06703.11	gi|257054022|ref|YP_003131855.1|	-	1.8	8.3	4.6	1	9.1	1.7	2.1	1	1	1	2	2	2	0	Microsomal	signal	peptidase	25	kDa	subunit	(SPC25)
Chitin_synth_2	PF03142.15	gi|257054022|ref|YP_003131855.1|	-	7.1	5.1	5.6	6	5.4	4.6	1.3	1	1	0	1	1	1	0	Chitin	synthase
DsbD	PF02683.15	gi|257054023|ref|YP_003131856.1|	-	3.8e-12	46.5	14.3	6e-12	45.9	14.3	1.3	1	0	0	1	1	1	1	Cytochrome	C	biogenesis	protein	transmembrane	region
Redoxin	PF08534.10	gi|257054024|ref|YP_003131857.1|	-	2.1e-10	40.5	0.0	2.6e-10	40.2	0.0	1.1	1	0	0	1	1	1	1	Redoxin
AhpC-TSA	PF00578.21	gi|257054024|ref|YP_003131857.1|	-	5.8e-08	32.7	0.0	7.3e-08	32.4	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Thioredoxin	PF00085.20	gi|257054024|ref|YP_003131857.1|	-	0.00094	19.1	0.0	0.0013	18.7	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_8	PF13905.6	gi|257054024|ref|YP_003131857.1|	-	0.00096	19.4	0.0	0.0043	17.3	0.0	1.9	1	1	0	1	1	1	1	Thioredoxin-like
SCO1-SenC	PF02630.14	gi|257054025|ref|YP_003131858.1|	-	2.4e-18	66.3	0.0	3.3e-18	65.9	0.0	1.2	1	0	0	1	1	1	1	SCO1/SenC
DUF2613	PF11021.8	gi|257054025|ref|YP_003131858.1|	-	0.02	15.0	0.1	0.055	13.6	0.0	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2613)
NosL	PF05573.12	gi|257054026|ref|YP_003131859.1|	-	8.6e-45	152.3	0.3	9.8e-45	152.1	0.3	1.0	1	0	0	1	1	1	1	NosL
PRY	PF13765.6	gi|257054026|ref|YP_003131859.1|	-	0.1	12.2	0.1	0.21	11.3	0.1	1.4	1	0	0	1	1	1	0	SPRY-associated	domain
NosD	PF05048.13	gi|257054027|ref|YP_003131860.1|	-	1.7e-24	86.4	0.6	1e-22	80.6	0.2	2.1	1	1	1	2	2	2	2	Periplasmic	copper-binding	protein	(NosD)
Beta_helix	PF13229.6	gi|257054027|ref|YP_003131860.1|	-	7.2e-15	55.2	5.2	9.4e-14	51.5	2.0	2.3	1	1	1	2	2	2	2	Right	handed	beta	helix	region
NosL	PF05573.12	gi|257054027|ref|YP_003131860.1|	-	1.7e-11	44.6	0.1	3.3e-11	43.7	0.1	1.4	1	0	0	1	1	1	1	NosL
DUF1565	PF07602.11	gi|257054027|ref|YP_003131860.1|	-	0.00042	19.7	6.3	0.12	11.7	0.8	2.9	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF1565)
Pectate_lyase_3	PF12708.7	gi|257054027|ref|YP_003131860.1|	-	0.018	14.9	8.2	0.079	12.8	2.9	3.2	1	1	1	2	2	2	0	Pectate	lyase	superfamily	protein
ABC_tran	PF00005.27	gi|257054028|ref|YP_003131861.1|	-	4e-23	82.5	0.0	6.1e-23	81.8	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|257054028|ref|YP_003131861.1|	-	2.9e-19	70.0	0.1	1.3e-11	44.9	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|257054028|ref|YP_003131861.1|	-	4.2e-07	29.6	0.0	0.028	13.8	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|257054028|ref|YP_003131861.1|	-	7.7e-05	22.4	0.1	0.00016	21.4	0.1	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.6	gi|257054028|ref|YP_003131861.1|	-	0.0011	18.7	0.0	0.022	14.5	0.0	2.0	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_23	PF13476.6	gi|257054028|ref|YP_003131861.1|	-	0.0018	18.8	0.0	0.0026	18.3	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_13	PF13166.6	gi|257054028|ref|YP_003131861.1|	-	0.0058	15.3	0.0	0.44	9.1	0.0	2.0	2	0	0	2	2	2	2	AAA	domain
AAA_16	PF13191.6	gi|257054028|ref|YP_003131861.1|	-	0.022	15.2	0.6	0.074	13.4	0.5	2.0	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_19	PF13245.6	gi|257054028|ref|YP_003131861.1|	-	0.032	14.6	0.1	5.8	7.2	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_30	PF13604.6	gi|257054028|ref|YP_003131861.1|	-	0.051	13.3	0.7	0.22	11.2	0.3	2.2	1	1	1	2	2	2	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|257054028|ref|YP_003131861.1|	-	0.076	12.9	0.0	0.11	12.3	0.0	1.3	1	0	0	1	1	1	0	RsgA	GTPase
ABC2_membrane_2	PF12679.7	gi|257054029|ref|YP_003131862.1|	-	4.9e-13	49.0	19.8	4.9e-13	49.0	19.8	1.9	1	1	1	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.7	gi|257054029|ref|YP_003131862.1|	-	0.00054	19.2	10.0	0.00065	18.9	10.0	1.1	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
Abhydrolase_6	PF12697.7	gi|257054030|ref|YP_003131863.1|	-	1.1e-21	78.4	6.4	1.5e-21	78.1	6.4	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.20	gi|257054030|ref|YP_003131863.1|	-	1.8e-15	57.3	0.0	4.7e-14	52.7	0.0	2.1	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.8	gi|257054030|ref|YP_003131863.1|	-	3e-07	30.0	0.0	6.2e-07	28.9	0.0	1.5	1	1	0	1	1	1	1	Serine	aminopeptidase,	S33
TMEM61	PF15105.6	gi|257054030|ref|YP_003131863.1|	-	0.066	13.0	0.0	0.1	12.4	0.0	1.3	1	0	0	1	1	1	0	TMEM61	protein	family
Polysacc_synt_3	PF13440.6	gi|257054032|ref|YP_003131865.1|	-	3.3e-28	98.8	12.9	3.3e-28	98.8	12.9	2.2	2	1	0	2	2	2	1	Polysaccharide	biosynthesis	protein
Polysacc_synt_C	PF14667.6	gi|257054032|ref|YP_003131865.1|	-	5.2e-24	84.9	15.7	5.2e-24	84.9	15.7	3.3	3	1	0	3	3	3	1	Polysaccharide	biosynthesis	C-terminal	domain
Polysacc_synt	PF01943.17	gi|257054032|ref|YP_003131865.1|	-	5.6e-18	65.3	34.4	1.5e-17	63.9	16.3	2.3	1	1	1	2	2	2	2	Polysaccharide	biosynthesis	protein
MurJ	PF03023.14	gi|257054032|ref|YP_003131865.1|	-	3.1e-12	45.8	10.7	3.1e-12	45.8	10.7	2.1	2	0	0	2	2	2	1	Lipid	II	flippase	MurJ
MatE	PF01554.18	gi|257054032|ref|YP_003131865.1|	-	1.7e-09	37.5	4.0	1.7e-09	37.5	4.0	2.8	2	1	0	2	2	2	1	MatE
Inositol_P	PF00459.25	gi|257054033|ref|YP_003131866.1|	-	2.9e-58	197.6	0.9	3.4e-58	197.3	0.9	1.0	1	0	0	1	1	1	1	Inositol	monophosphatase	family
UDG	PF03167.19	gi|257054035|ref|YP_003131868.1|	-	6e-09	36.1	0.0	7.4e-09	35.8	0.0	1.1	1	0	0	1	1	1	1	Uracil	DNA	glycosylase	superfamily
TOC159_MAD	PF11886.8	gi|257054035|ref|YP_003131868.1|	-	0.23	10.3	0.1	0.31	9.9	0.1	1.1	1	0	0	1	1	1	0	Translocase	of	chloroplast	159/132,	membrane	anchor	domain
SNF	PF00209.18	gi|257054036|ref|YP_003131869.1|	-	5.5e-55	187.0	26.4	1.6e-29	103.0	14.0	2.2	2	0	0	2	2	2	2	Sodium:neurotransmitter	symporter	family
SNF	PF00209.18	gi|257054038|ref|YP_003131871.1|	-	4.8e-75	253.2	23.4	3.2e-44	151.5	8.7	2.1	2	0	0	2	2	2	2	Sodium:neurotransmitter	symporter	family
DUF2304	PF10066.9	gi|257054038|ref|YP_003131871.1|	-	0.35	11.1	8.7	22	5.4	0.5	4.5	4	0	0	4	4	4	0	Uncharacterized	conserved	protein	(DUF2304)
adh_short_C2	PF13561.6	gi|257054039|ref|YP_003131872.1|	-	8.7e-41	140.0	0.4	1.6e-40	139.1	0.4	1.4	1	1	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|257054039|ref|YP_003131872.1|	-	6e-38	130.3	0.1	7.1e-38	130.0	0.1	1.0	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|257054039|ref|YP_003131872.1|	-	4.6e-07	29.9	0.8	9.3e-07	28.9	0.8	1.4	1	1	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|257054039|ref|YP_003131872.1|	-	1.4e-05	24.7	0.4	2e-05	24.2	0.1	1.5	2	0	0	2	2	2	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|257054039|ref|YP_003131872.1|	-	0.026	13.9	0.0	0.036	13.5	0.0	1.2	1	0	0	1	1	1	0	GDP-mannose	4,6	dehydratase
RmlD_sub_bind	PF04321.17	gi|257054039|ref|YP_003131872.1|	-	0.042	13.0	0.1	0.06	12.4	0.1	1.2	1	0	0	1	1	1	0	RmlD	substrate	binding	domain
NAD_binding_7	PF13241.6	gi|257054039|ref|YP_003131872.1|	-	0.11	12.9	0.1	0.31	11.5	0.0	1.8	2	1	0	2	2	2	0	Putative	NAD(P)-binding
adh_short_C2	PF13561.6	gi|257054040|ref|YP_003131873.1|	-	2.6e-72	243.1	3.9	3e-72	243.0	3.9	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|257054040|ref|YP_003131873.1|	-	1.3e-53	181.4	3.7	1.5e-53	181.2	3.7	1.0	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|257054040|ref|YP_003131873.1|	-	3.1e-11	43.5	1.3	4.7e-11	42.9	1.3	1.2	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|257054040|ref|YP_003131873.1|	-	0.018	14.5	0.5	0.029	13.8	0.5	1.4	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
ABC_tran	PF00005.27	gi|257054041|ref|YP_003131874.1|	-	1.4e-27	96.9	0.0	2.6e-27	96.0	0.0	1.5	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|257054041|ref|YP_003131874.1|	-	3.8e-13	49.9	0.2	5.8e-07	29.6	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_30	PF13604.6	gi|257054041|ref|YP_003131874.1|	-	0.00021	21.1	0.0	0.00041	20.1	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
DUF4162	PF13732.6	gi|257054041|ref|YP_003131874.1|	-	0.00053	20.7	0.3	0.0067	17.1	0.1	2.5	2	1	0	2	2	2	1	Domain	of	unknown	function	(DUF4162)
AAA_23	PF13476.6	gi|257054041|ref|YP_003131874.1|	-	0.0009	19.8	0.6	0.002	18.7	0.3	1.6	2	0	0	2	2	2	1	AAA	domain
AAA_15	PF13175.6	gi|257054041|ref|YP_003131874.1|	-	0.011	15.5	0.0	0.16	11.7	0.0	2.0	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_29	PF13555.6	gi|257054041|ref|YP_003131874.1|	-	0.012	15.4	0.1	0.027	14.2	0.1	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
SRP54	PF00448.22	gi|257054041|ref|YP_003131874.1|	-	0.014	15.0	0.2	0.043	13.4	0.1	1.7	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
AAA_24	PF13479.6	gi|257054041|ref|YP_003131874.1|	-	0.027	14.2	0.2	0.31	10.7	0.1	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_22	PF13401.6	gi|257054041|ref|YP_003131874.1|	-	0.048	13.9	0.1	0.14	12.5	0.1	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_27	PF13514.6	gi|257054041|ref|YP_003131874.1|	-	0.073	12.6	0.0	0.16	11.5	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.6	gi|257054041|ref|YP_003131874.1|	-	0.14	12.3	0.1	0.74	10.0	0.1	2.1	1	1	0	1	1	1	0	AAA	domain
AAA_13	PF13166.6	gi|257054041|ref|YP_003131874.1|	-	0.15	10.7	0.0	3.8	6.0	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
PrsW-protease	PF13367.6	gi|257054042|ref|YP_003131875.1|	-	1.3e-09	37.8	13.2	1.3e-09	37.8	13.2	2.3	2	0	0	2	2	2	1	PrsW	family	intramembrane	metalloprotease
ABC2_membrane_2	PF12679.7	gi|257054042|ref|YP_003131875.1|	-	1.8e-07	30.7	0.0	1.8e-07	30.7	0.0	3.1	2	2	0	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.7	gi|257054042|ref|YP_003131875.1|	-	0.00068	18.8	19.7	0.00068	18.8	19.7	2.5	3	1	0	3	3	3	1	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.7	gi|257054043|ref|YP_003131876.1|	-	3.3e-20	72.5	0.7	4.2e-20	72.1	0.7	1.1	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.7	gi|257054043|ref|YP_003131876.1|	-	3.7e-12	46.1	8.1	7.2e-12	45.2	8.1	1.5	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.24	gi|257054043|ref|YP_003131876.1|	-	6.9e-07	28.9	5.9	6.9e-07	28.9	5.9	2.3	3	0	0	3	3	3	1	ABC-2	type	transporter
ABC2_membrane_4	PF12730.7	gi|257054043|ref|YP_003131876.1|	-	3.8e-05	23.7	13.1	0.00034	20.6	8.5	3.0	2	1	0	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_5	PF13346.6	gi|257054043|ref|YP_003131876.1|	-	0.0003	20.4	4.5	0.0003	20.4	4.5	1.9	2	0	0	2	2	2	1	ABC-2	family	transporter	protein
FtsX_ECD	PF18075.1	gi|257054043|ref|YP_003131876.1|	-	0.11	13.1	0.1	0.21	12.3	0.1	1.5	1	1	0	1	1	1	0	FtsX	extracellular	domain
Radical_SAM	PF04055.21	gi|257054044|ref|YP_003131877.1|	-	1.9e-16	60.9	0.0	4.6e-16	59.7	0.0	1.7	1	1	0	1	1	1	1	Radical	SAM	superfamily
SPASM	PF13186.6	gi|257054044|ref|YP_003131877.1|	-	0.0002	21.8	0.0	0.00043	20.7	0.0	1.6	1	0	0	1	1	1	1	Iron-sulfur	cluster-binding	domain
Fer4_12	PF13353.6	gi|257054044|ref|YP_003131877.1|	-	0.00028	21.2	0.0	0.00048	20.4	0.0	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.6	gi|257054044|ref|YP_003131877.1|	-	0.002	18.2	0.0	0.011	15.9	0.0	2.0	1	1	1	2	2	2	1	4Fe-4S	single	cluster	domain
Adhesin_P1_N	PF18652.1	gi|257054044|ref|YP_003131877.1|	-	0.14	12.2	0.0	0.26	11.3	0.0	1.4	1	0	0	1	1	1	0	Adhesin	P1	N-terminal	domain
adh_short	PF00106.25	gi|257054045|ref|YP_003131878.1|	-	4.5e-28	98.0	0.0	2.8e-27	95.5	0.0	1.9	1	1	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.6	gi|257054045|ref|YP_003131878.1|	-	1.1e-15	57.8	0.1	2.5e-15	56.7	0.1	1.6	1	1	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.10	gi|257054045|ref|YP_003131878.1|	-	7.8e-07	29.2	0.0	1.3e-06	28.4	0.0	1.4	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|257054045|ref|YP_003131878.1|	-	0.0009	18.8	0.0	0.0012	18.4	0.0	1.3	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
RmlD_sub_bind	PF04321.17	gi|257054045|ref|YP_003131878.1|	-	0.01	15.0	0.0	0.033	13.3	0.0	1.8	2	0	0	2	2	2	0	RmlD	substrate	binding	domain
BMFP	PF04380.13	gi|257054046|ref|YP_003131879.1|	-	0.0069	16.8	0.2	0.0077	16.7	0.2	1.1	1	0	0	1	1	1	1	Membrane	fusogenic	activity
DAO	PF01266.24	gi|257054047|ref|YP_003131880.1|	-	8.6e-26	91.3	0.0	1.1e-25	91.1	0.0	1.1	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Mqo	PF06039.15	gi|257054047|ref|YP_003131880.1|	-	1.2e-25	90.1	0.0	1.2e-24	86.7	0.0	1.9	1	1	0	1	1	1	1	Malate:quinone	oxidoreductase	(Mqo)
Pyr_redox_3	PF13738.6	gi|257054047|ref|YP_003131880.1|	-	1.2e-06	28.1	0.1	4.9e-06	26.0	0.0	1.8	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_2	PF07992.14	gi|257054047|ref|YP_003131880.1|	-	0.00039	19.8	0.1	0.43	9.8	0.1	2.2	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|257054047|ref|YP_003131880.1|	-	0.0015	17.3	0.1	0.031	13.0	0.0	2.1	2	0	0	2	2	2	1	HI0933-like	protein
NAD_binding_8	PF13450.6	gi|257054047|ref|YP_003131880.1|	-	0.0026	17.9	0.0	0.0063	16.7	0.0	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox	PF00070.27	gi|257054047|ref|YP_003131880.1|	-	0.037	14.6	0.5	11	6.7	0.1	2.5	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.6	gi|257054047|ref|YP_003131880.1|	-	0.086	12.8	0.1	4	7.4	0.0	2.6	2	0	0	2	2	2	0	FAD-NAD(P)-binding
Thi4	PF01946.17	gi|257054047|ref|YP_003131880.1|	-	0.13	11.5	0.0	0.83	8.8	0.0	2.0	2	0	0	2	2	2	0	Thi4	family
HTH_20	PF12840.7	gi|257054049|ref|YP_003131882.1|	-	0.0022	18.0	3.9	0.0036	17.3	0.1	2.7	2	1	0	2	2	2	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|257054049|ref|YP_003131882.1|	-	0.0069	16.3	0.0	0.023	14.6	0.0	1.9	2	1	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|257054049|ref|YP_003131882.1|	-	0.06	13.2	1.1	0.19	11.6	0.1	2.1	2	0	0	2	2	2	0	MarR	family
HTH_7	PF02796.15	gi|257054049|ref|YP_003131882.1|	-	0.14	12.3	0.0	0.37	10.9	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	resolvase
HTH_Tnp_1	PF01527.20	gi|257054049|ref|YP_003131882.1|	-	0.22	11.8	0.0	0.22	11.8	0.0	2.7	2	1	0	2	2	2	0	Transposase
LacI	PF00356.21	gi|257054049|ref|YP_003131882.1|	-	0.45	10.4	1.8	3.1	7.7	0.4	2.5	2	1	0	2	2	2	0	Bacterial	regulatory	proteins,	lacI	family
Histone_HNS	PF00816.21	gi|257054049|ref|YP_003131882.1|	-	0.74	10.7	5.7	0.54	11.1	3.8	1.8	2	0	0	2	2	2	0	H-NS	histone	family
CorA	PF01544.18	gi|257054049|ref|YP_003131882.1|	-	1.1	8.5	4.9	1.9	7.7	4.9	1.3	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
DUF4164	PF13747.6	gi|257054049|ref|YP_003131882.1|	-	2.8	8.3	13.4	0.5	10.7	8.5	2.3	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4164)
DinB_2	PF12867.7	gi|257054049|ref|YP_003131882.1|	-	2.9	8.4	6.9	1.1	9.7	0.9	2.4	1	1	1	2	2	2	0	DinB	superfamily
DUF4140	PF13600.6	gi|257054049|ref|YP_003131882.1|	-	4.8	7.7	9.7	3.2e+02	1.8	9.7	2.8	1	1	0	1	1	1	0	N-terminal	domain	of	unknown	function	(DUF4140)
cwf21	PF08312.12	gi|257054049|ref|YP_003131882.1|	-	9.5	6.5	11.2	0.63	10.2	0.3	3.1	2	1	0	2	2	2	0	cwf21	domain
DUF5615	PF18480.1	gi|257054050|ref|YP_003131883.1|	-	1.6e-19	69.4	0.0	1.9e-19	69.2	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5615)
PIN_10	PF18478.1	gi|257054050|ref|YP_003131883.1|	-	2e-11	43.9	0.0	3.7e-11	43.1	0.0	1.4	2	0	0	2	2	2	1	PIN	like	domain
Mut7-C	PF01927.16	gi|257054050|ref|YP_003131883.1|	-	0.048	13.8	0.0	0.048	13.8	0.0	1.1	1	0	0	1	1	1	0	Mut7-C	RNAse	domain
HTH_39	PF14090.6	gi|257054050|ref|YP_003131883.1|	-	0.16	11.7	0.0	0.3	10.8	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF433	PF04255.14	gi|257054051|ref|YP_003131884.1|	-	4.4e-14	52.1	0.8	6e-14	51.6	0.8	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF433)
DUF4296	PF14129.6	gi|257054051|ref|YP_003131884.1|	-	0.0014	19.2	0.0	0.0014	19.2	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4296)
Mso1_Sec1_bdg	PF14475.6	gi|257054051|ref|YP_003131884.1|	-	0.084	12.5	0.1	0.18	11.4	0.1	1.5	1	0	0	1	1	1	0	Sec1-binding	region	of	Mso1
Aldo_ket_red	PF00248.21	gi|257054052|ref|YP_003131885.1|	-	1.8e-70	237.5	0.0	2e-70	237.3	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
Cuticle_1	PF08140.11	gi|257054054|ref|YP_003131887.1|	-	0.012	15.6	0.7	0.75	9.9	0.0	2.7	2	0	0	2	2	2	0	Crustacean	cuticle	protein	repeat
Memo	PF01875.17	gi|257054055|ref|YP_003131888.1|	-	4e-63	213.1	0.0	4.7e-63	212.9	0.0	1.0	1	0	0	1	1	1	1	Memo-like	protein
Radical_SAM	PF04055.21	gi|257054056|ref|YP_003131889.1|	-	8.6e-21	75.0	0.0	1.4e-20	74.4	0.0	1.3	1	0	0	1	1	1	1	Radical	SAM	superfamily
UPF0004	PF00919.20	gi|257054056|ref|YP_003131889.1|	-	1.9e-19	69.5	0.0	3.2e-19	68.8	0.0	1.4	1	0	0	1	1	1	1	Uncharacterized	protein	family	UPF0004
TRAM	PF01938.20	gi|257054056|ref|YP_003131889.1|	-	1.8e-06	27.8	0.0	3.4e-06	26.9	0.0	1.5	1	0	0	1	1	1	1	TRAM	domain
CSD2	PF17876.1	gi|257054056|ref|YP_003131889.1|	-	0.14	12.4	0.0	0.52	10.5	0.0	1.9	2	0	0	2	2	2	0	Cold	shock	domain
PGF-CTERM	PF18204.1	gi|257054057|ref|YP_003131890.1|	-	0.00052	19.9	3.5	0.0011	18.8	3.5	1.6	1	0	0	1	1	1	1	PGF-CTERM	motif
Trypan_PARP	PF05887.11	gi|257054057|ref|YP_003131890.1|	-	0.37	10.8	5.8	0.79	9.7	3.6	2.2	2	0	0	2	2	2	0	Procyclic	acidic	repetitive	protein	(PARP)
DUF63	PF01889.17	gi|257054058|ref|YP_003131891.1|	-	8e-11	42.6	10.0	1.2e-10	42.0	10.0	1.2	1	0	0	1	1	1	1	Membrane	protein	of	unknown	function	DUF63
PnpCD_PnpD_N	PF18191.1	gi|257054058|ref|YP_003131891.1|	-	0.13	11.9	0.0	0.2	11.2	0.0	1.3	1	0	0	1	1	1	0	Hydroquinone	1,2-dioxygenase	large	subunit	N-terminal
GpcrRhopsn4	PF10192.9	gi|257054058|ref|YP_003131891.1|	-	0.77	9.1	5.6	0.52	9.7	1.9	2.0	2	0	0	2	2	2	0	Rhodopsin-like	GPCR	transmembrane	domain
HPP	PF04982.13	gi|257054059|ref|YP_003131892.1|	-	4.5e-15	55.9	5.5	9.2e-15	54.9	5.5	1.5	1	0	0	1	1	1	1	HPP	family
Usp	PF00582.26	gi|257054059|ref|YP_003131892.1|	-	2.8e-06	27.9	11.6	0.35	11.4	7.0	4.8	3	2	1	4	4	4	3	Universal	stress	protein	family
TrkA_N	PF02254.18	gi|257054060|ref|YP_003131893.1|	-	5.3e-30	104.1	0.3	8.8e-30	103.3	0.3	1.4	1	0	0	1	1	1	1	TrkA-N	domain
Ion_trans_2	PF07885.16	gi|257054060|ref|YP_003131893.1|	-	1.5e-14	53.7	3.3	1.5e-14	53.7	3.3	2.2	2	0	0	2	2	2	1	Ion	channel
Ion_trans	PF00520.31	gi|257054060|ref|YP_003131893.1|	-	0.003	16.8	0.2	0.0048	16.2	0.2	1.4	1	1	0	1	1	1	1	Ion	transport	protein
Sacchrp_dh_NADP	PF03435.18	gi|257054060|ref|YP_003131893.1|	-	0.017	15.4	0.1	0.35	11.1	0.0	2.2	1	1	1	2	2	2	0	Saccharopine	dehydrogenase	NADP	binding	domain
SBP_bac_3	PF00497.20	gi|257054060|ref|YP_003131893.1|	-	0.034	13.6	0.1	4.5	6.6	0.0	2.2	1	1	0	2	2	2	0	Bacterial	extracellular	solute-binding	proteins,	family	3
IRK	PF01007.20	gi|257054060|ref|YP_003131893.1|	-	0.17	11.7	0.0	0.29	11.0	0.0	1.4	1	0	0	1	1	1	0	Inward	rectifier	potassium	channel	transmembrane	domain
TrkA_C	PF02080.21	gi|257054061|ref|YP_003131894.1|	-	4.2e-13	48.9	0.1	5.5e-11	42.1	0.0	2.6	2	0	0	2	2	2	2	TrkA-C	domain
TrkA_C	PF02080.21	gi|257054062|ref|YP_003131895.1|	-	2.3e-05	24.1	0.8	0.0001	22.1	0.2	2.2	2	0	0	2	2	2	1	TrkA-C	domain
Asparaginase	PF00710.20	gi|257054064|ref|YP_003131897.1|	-	4.3e-59	199.3	1.3	7.9e-59	198.4	1.2	1.4	2	0	0	2	2	2	1	Asparaginase,	N-terminal
Asparaginase_C	PF17763.1	gi|257054064|ref|YP_003131897.1|	-	4e-27	94.7	0.1	2.9e-26	91.9	0.0	2.2	2	0	0	2	2	2	1	Glutaminase/Asparaginase	C-terminal	domain
GatD_N	PF18195.1	gi|257054064|ref|YP_003131897.1|	-	4.3e-15	54.8	0.0	7.1e-15	54.1	0.0	1.4	1	0	0	1	1	1	1	GatD	N-terminal	domain
HTH_5	PF01022.20	gi|257054066|ref|YP_003131899.1|	-	5.9e-18	64.5	0.0	2.6e-16	59.2	0.0	2.4	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|257054066|ref|YP_003131899.1|	-	5.1e-15	55.3	0.3	2e-13	50.2	0.5	2.4	2	0	0	2	2	2	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|257054066|ref|YP_003131899.1|	-	6.6e-13	48.3	0.1	7.6e-06	25.7	0.1	2.2	2	0	0	2	2	2	2	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|257054066|ref|YP_003131899.1|	-	6.6e-12	45.1	0.9	1.9e-08	34.0	0.4	2.4	2	0	0	2	2	2	2	MarR	family
HTH_IclR	PF09339.10	gi|257054066|ref|YP_003131899.1|	-	9.2e-10	38.2	0.0	0.0024	17.7	0.0	3.1	2	1	0	2	2	2	2	IclR	helix-turn-helix	domain
Rrf2	PF02082.20	gi|257054066|ref|YP_003131899.1|	-	6.3e-08	32.9	0.0	0.0057	17.0	0.0	2.3	2	0	0	2	2	2	2	Transcriptional	regulator
HTH_24	PF13412.6	gi|257054066|ref|YP_003131899.1|	-	2.1e-07	30.4	5.2	1.4e-05	24.5	0.1	3.4	3	1	0	3	3	3	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|257054066|ref|YP_003131899.1|	-	4.7e-07	29.6	0.0	3.9e-06	26.7	0.1	2.1	2	0	0	2	2	2	1	MarR	family
HTH_27	PF13463.6	gi|257054066|ref|YP_003131899.1|	-	1.3e-06	28.8	0.1	3.5e-05	24.2	0.1	2.4	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_Crp_2	PF13545.6	gi|257054066|ref|YP_003131899.1|	-	1.8e-06	27.8	0.0	0.00035	20.5	0.1	2.5	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|257054066|ref|YP_003131899.1|	-	5.2e-05	23.4	0.0	0.0055	16.9	0.0	2.4	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_11	PF08279.12	gi|257054066|ref|YP_003131899.1|	-	7.4e-05	22.6	0.0	0.00016	21.5	0.0	1.6	1	0	0	1	1	1	1	HTH	domain
DprA_WH	PF17782.1	gi|257054066|ref|YP_003131899.1|	-	7.5e-05	22.8	2.2	0.0032	17.5	0.2	2.4	2	0	0	2	2	2	1	DprA	winged	helix	domain
HTH_CodY	PF08222.11	gi|257054066|ref|YP_003131899.1|	-	0.0002	20.8	0.0	0.0011	18.5	0.0	2.0	2	0	0	2	2	2	1	CodY	helix-turn-helix	domain
DUF2250	PF10007.9	gi|257054066|ref|YP_003131899.1|	-	0.00022	21.3	0.0	0.13	12.3	0.0	2.2	2	0	0	2	2	2	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
DUF4423	PF14394.6	gi|257054066|ref|YP_003131899.1|	-	0.00024	20.8	0.0	0.17	11.6	0.0	2.3	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF4423)
LexA_DNA_bind	PF01726.16	gi|257054066|ref|YP_003131899.1|	-	0.00057	19.6	0.0	0.027	14.3	0.0	2.5	2	0	0	2	2	2	1	LexA	DNA	binding	domain
HTH_47	PF16221.5	gi|257054066|ref|YP_003131899.1|	-	0.00066	19.2	0.0	0.16	11.6	0.0	2.4	2	0	0	2	2	2	1	winged	helix-turn-helix
GntR	PF00392.21	gi|257054066|ref|YP_003131899.1|	-	0.0018	17.9	0.0	0.25	11.0	0.0	2.4	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
PadR	PF03551.14	gi|257054066|ref|YP_003131899.1|	-	0.0028	17.6	0.6	0.025	14.6	0.1	2.6	3	1	0	3	3	1	1	Transcriptional	regulator	PadR-like	family
FeoC	PF09012.10	gi|257054066|ref|YP_003131899.1|	-	0.0029	17.6	0.0	3.2	7.9	0.0	2.6	2	0	0	2	2	2	1	FeoC	like	transcriptional	regulator
DDRGK	PF09756.9	gi|257054066|ref|YP_003131899.1|	-	0.0054	16.4	0.0	0.0089	15.6	0.0	1.3	1	0	0	1	1	1	1	DDRGK	domain
RP-C	PF03428.13	gi|257054066|ref|YP_003131899.1|	-	0.0063	16.2	0.3	0.25	11.0	0.0	2.2	2	0	0	2	2	2	1	Replication	protein	C	N-terminal	domain
HxlR	PF01638.17	gi|257054066|ref|YP_003131899.1|	-	0.016	15.1	0.1	0.19	11.6	0.0	2.3	3	0	0	3	3	2	0	HxlR-like	helix-turn-helix
HTH_10	PF04967.12	gi|257054066|ref|YP_003131899.1|	-	0.016	15.0	0.0	0.045	13.6	0.0	1.7	2	0	0	2	2	1	0	HTH	DNA	binding	domain
SMC_ScpB	PF04079.16	gi|257054066|ref|YP_003131899.1|	-	0.027	14.1	0.0	0.59	9.7	0.0	2.6	2	1	0	2	2	2	0	Segregation	and	condensation	complex	subunit	ScpB
FaeA	PF04703.12	gi|257054066|ref|YP_003131899.1|	-	0.047	14.1	0.0	0.087	13.2	0.0	1.4	1	0	0	1	1	1	0	FaeA-like	protein
Cdc6_C	PF09079.11	gi|257054066|ref|YP_003131899.1|	-	0.057	13.4	0.0	0.34	10.9	0.0	2.3	2	0	0	2	2	2	0	CDC6,	C	terminal	winged	helix	domain
BLACT_WH	PF17778.1	gi|257054066|ref|YP_003131899.1|	-	0.077	13.0	1.4	4	7.5	0.2	2.4	2	0	0	2	2	2	0	Beta-lactamase	associated	winged	helix	domain
PSRT	PF07636.11	gi|257054066|ref|YP_003131899.1|	-	0.095	12.4	0.8	0.19	11.4	0.8	1.5	1	0	0	1	1	1	0	PSRT
ArsR	PF09824.9	gi|257054066|ref|YP_003131899.1|	-	0.12	12.0	0.0	1.4	8.5	0.0	2.0	2	0	0	2	2	2	0	ArsR	transcriptional	regulator
DUF2513	PF10711.9	gi|257054066|ref|YP_003131899.1|	-	0.16	12.3	0.0	0.25	11.6	0.0	1.3	1	0	0	1	1	1	0	Hypothetical	protein	(DUF2513)
HTH_AsnC-type	PF13404.6	gi|257054066|ref|YP_003131899.1|	-	0.53	10.2	0.1	0.53	10.2	0.1	3.3	3	1	0	3	3	2	0	AsnC-type	helix-turn-helix	domain
Dynamitin	PF04912.14	gi|257054067|ref|YP_003131900.1|	-	5.5e-05	22.7	0.6	7.3e-05	22.3	0.6	1.1	1	0	0	1	1	1	1	Dynamitin
DUF3450	PF11932.8	gi|257054067|ref|YP_003131900.1|	-	0.0023	17.3	1.7	0.0033	16.8	1.7	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3450)
Sugarporin_N	PF11471.8	gi|257054067|ref|YP_003131900.1|	-	0.0028	17.6	4.7	0.0028	17.6	4.7	3.1	3	0	0	3	3	3	1	Maltoporin	periplasmic	N-terminal	extension
ABC_tran_CTD	PF16326.5	gi|257054067|ref|YP_003131900.1|	-	0.02	15.1	1.6	0.036	14.3	1.6	1.4	1	0	0	1	1	1	0	ABC	transporter	C-terminal	domain
DUF2802	PF10975.8	gi|257054067|ref|YP_003131900.1|	-	0.032	14.3	0.8	0.064	13.4	0.8	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2802)
Tropomyosin_1	PF12718.7	gi|257054067|ref|YP_003131900.1|	-	0.046	13.9	0.7	0.081	13.1	0.7	1.3	1	0	0	1	1	1	0	Tropomyosin	like
Tnp_22_trimer	PF17489.2	gi|257054067|ref|YP_003131900.1|	-	0.073	13.0	0.7	10	6.2	0.1	2.4	2	0	0	2	2	2	0	L1	transposable	element	trimerization	domain
DUF5082	PF16888.5	gi|257054067|ref|YP_003131900.1|	-	0.12	12.7	0.2	1.7	9.0	0.1	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF5082)
FemAB	PF02388.16	gi|257054067|ref|YP_003131900.1|	-	0.13	11.1	0.5	0.18	10.7	0.5	1.1	1	0	0	1	1	1	0	FemAB	family
DUF4140	PF13600.6	gi|257054067|ref|YP_003131900.1|	-	0.16	12.4	7.1	0.25	11.8	1.7	2.3	1	1	1	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
TRPM_tetra	PF16519.5	gi|257054067|ref|YP_003131900.1|	-	0.18	11.9	0.2	0.31	11.2	0.2	1.3	1	0	0	1	1	1	0	Tetramerisation	domain	of	TRPM
Paralemmin	PF03285.15	gi|257054067|ref|YP_003131900.1|	-	0.2	11.2	1.0	0.36	10.4	1.0	1.4	1	0	0	1	1	1	0	Paralemmin
CLZ	PF16526.5	gi|257054067|ref|YP_003131900.1|	-	0.21	12.0	3.5	1	9.7	3.5	2.0	1	1	0	1	1	1	0	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
TMF_DNA_bd	PF12329.8	gi|257054067|ref|YP_003131900.1|	-	0.51	10.4	2.0	13	5.9	1.2	2.2	2	0	0	2	2	2	0	TATA	element	modulatory	factor	1	DNA	binding
DHR10	PF18595.1	gi|257054067|ref|YP_003131900.1|	-	2.3	8.3	8.7	2.1	8.4	4.5	2.1	1	1	1	2	2	2	0	Designed	helical	repeat	protein	10	domain
PspB	PF06667.12	gi|257054067|ref|YP_003131900.1|	-	2.8	8.0	5.8	21	5.3	0.4	2.7	2	1	0	3	3	3	0	Phage	shock	protein	B
MerR-DNA-bind	PF09278.11	gi|257054067|ref|YP_003131900.1|	-	2.9	8.5	6.8	17	6.0	1.7	2.4	1	1	1	2	2	2	0	MerR,	DNA	binding
acVLRF1	PF18859.1	gi|257054069|ref|YP_003131902.1|	-	8.5e-28	97.3	0.2	8.5e-28	97.3	0.2	2.8	2	1	0	2	2	2	1	Actinobacteria/chloroflexi	VLRF1	release	factor
baeRF_family10	PF18854.1	gi|257054069|ref|YP_003131902.1|	-	2.4e-05	24.6	0.2	2.4e-05	24.6	0.2	2.2	2	0	0	2	2	2	1	Bacterial	archaeo-eukaryotic	release	factor	family	10
eRF1_2	PF03464.15	gi|257054069|ref|YP_003131902.1|	-	0.00015	22.1	0.0	0.00022	21.5	0.0	1.3	1	0	0	1	1	1	1	eRF1	domain	2
CENP-Q	PF13094.6	gi|257054069|ref|YP_003131902.1|	-	0.0002	21.6	0.1	0.00033	20.9	0.1	1.4	1	0	0	1	1	1	1	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
HOOK	PF05622.12	gi|257054069|ref|YP_003131902.1|	-	0.00047	18.5	6.2	0.00064	18.0	6.2	1.1	1	0	0	1	1	1	1	HOOK	protein
Uso1_p115_C	PF04871.13	gi|257054069|ref|YP_003131902.1|	-	0.0056	17.1	2.2	0.01	16.2	2.2	1.3	1	0	0	1	1	1	1	Uso1	/	p115	like	vesicle	tethering	protein,	C	terminal	region
DUF3584	PF12128.8	gi|257054069|ref|YP_003131902.1|	-	0.011	13.3	4.2	0.015	12.9	4.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
EzrA	PF06160.12	gi|257054069|ref|YP_003131902.1|	-	0.023	12.9	1.1	0.034	12.3	1.1	1.1	1	0	0	1	1	1	0	Septation	ring	formation	regulator,	EzrA
Cep57_CLD_2	PF14197.6	gi|257054069|ref|YP_003131902.1|	-	0.041	14.0	15.1	0.099	12.7	15.1	1.7	1	0	0	1	1	1	0	Centrosome	localisation	domain	of	PPC89
Syntaxin	PF00804.25	gi|257054069|ref|YP_003131902.1|	-	0.042	13.5	3.7	0.063	12.9	3.7	1.2	1	0	0	1	1	1	0	Syntaxin
Corazonin	PF17308.2	gi|257054069|ref|YP_003131902.1|	-	0.042	14.2	0.9	0.069	13.5	0.0	1.7	2	0	0	2	2	2	0	Pro-corazonin
ERM	PF00769.19	gi|257054069|ref|YP_003131902.1|	-	0.056	13.3	9.4	0.09	12.6	9.4	1.2	1	0	0	1	1	1	0	Ezrin/radixin/moesin	family
Jnk-SapK_ap_N	PF09744.9	gi|257054069|ref|YP_003131902.1|	-	0.078	13.2	10.1	0.16	12.2	10.1	1.6	1	0	0	1	1	1	0	JNK_SAPK-associated	protein-1
GAS	PF13851.6	gi|257054069|ref|YP_003131902.1|	-	0.09	12.1	2.1	0.16	11.3	2.1	1.4	1	0	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
Wtap	PF17098.5	gi|257054069|ref|YP_003131902.1|	-	0.2	11.6	5.8	0.39	10.6	5.8	1.5	1	0	0	1	1	1	0	WTAP/Mum2p	family
DUF4472	PF14739.6	gi|257054069|ref|YP_003131902.1|	-	0.24	12.1	5.3	0.42	11.4	5.3	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4472)
DUF3450	PF11932.8	gi|257054069|ref|YP_003131902.1|	-	0.3	10.4	6.0	0.63	9.3	6.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3450)
Fmp27_WPPW	PF10359.9	gi|257054069|ref|YP_003131902.1|	-	0.32	9.8	2.9	0.44	9.3	2.9	1.1	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
DASH_Dam1	PF08653.10	gi|257054069|ref|YP_003131902.1|	-	0.46	10.3	1.2	5.6	6.8	0.0	2.8	3	0	0	3	3	3	0	DASH	complex	subunit	Dam1
APG6_N	PF17675.1	gi|257054069|ref|YP_003131902.1|	-	0.48	11.0	9.0	1.1	9.8	9.0	1.6	1	0	0	1	1	1	0	Apg6	coiled-coil	region
DUF16	PF01519.16	gi|257054069|ref|YP_003131902.1|	-	0.53	10.8	1.9	1.3	9.6	1.9	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	DUF16
ADIP	PF11559.8	gi|257054069|ref|YP_003131902.1|	-	0.55	10.3	7.7	0.26	11.4	5.6	1.5	2	0	0	2	2	1	0	Afadin-	and	alpha	-actinin-Binding
TPR_MLP1_2	PF07926.12	gi|257054069|ref|YP_003131902.1|	-	0.57	10.2	9.6	12	5.9	9.6	2.3	1	1	0	1	1	1	0	TPR/MLP1/MLP2-like	protein
MCC-bdg_PDZ	PF10506.9	gi|257054069|ref|YP_003131902.1|	-	0.73	9.9	7.6	0.41	10.7	0.5	2.8	3	0	0	3	3	3	0	PDZ	domain	of	MCC-2	bdg	protein	for	Usher	syndrome
ZapB	PF06005.12	gi|257054069|ref|YP_003131902.1|	-	0.74	10.3	12.7	1.9	9.0	6.2	2.6	1	1	1	2	2	2	0	Cell	division	protein	ZapB
bZIP_1	PF00170.21	gi|257054069|ref|YP_003131902.1|	-	0.8	9.9	8.7	7.5	6.7	0.6	2.3	1	1	1	2	2	2	0	bZIP	transcription	factor
V_ATPase_I	PF01496.19	gi|257054069|ref|YP_003131902.1|	-	1	7.2	3.2	1.3	6.9	3.2	1.0	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
Spc7	PF08317.11	gi|257054069|ref|YP_003131902.1|	-	1	8.2	4.9	1.5	7.6	4.9	1.2	1	0	0	1	1	1	0	Spc7	kinetochore	protein
KfrA_N	PF11740.8	gi|257054069|ref|YP_003131902.1|	-	1.5	9.5	15.0	1.1e+02	3.5	11.9	3.4	3	1	0	3	3	3	0	Plasmid	replication	region	DNA-binding	N-term
DUF3552	PF12072.8	gi|257054069|ref|YP_003131902.1|	-	2.1	7.7	11.0	3	7.2	11.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3552)
CLZ	PF16526.5	gi|257054069|ref|YP_003131902.1|	-	2.1	8.8	12.6	0.092	13.1	2.8	2.8	2	1	0	3	3	2	0	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
DivIC	PF04977.15	gi|257054069|ref|YP_003131902.1|	-	2.8	7.8	9.9	1.9	8.3	3.3	2.4	1	1	1	2	2	2	0	Septum	formation	initiator
betaPIX_CC	PF16523.5	gi|257054069|ref|YP_003131902.1|	-	3	7.7	9.7	0.52	10.2	3.5	2.4	2	1	1	3	3	2	0	betaPIX	coiled	coil
WD40_alt	PF14077.6	gi|257054069|ref|YP_003131902.1|	-	4.1	7.3	5.6	11	5.9	0.5	2.7	3	0	0	3	3	2	0	Alternative	WD40	repeat	motif
ABC_tran_CTD	PF16326.5	gi|257054069|ref|YP_003131902.1|	-	6	7.2	9.2	1.8	8.9	5.2	2.2	2	1	1	3	3	2	0	ABC	transporter	C-terminal	domain
MraZ	PF02381.18	gi|257054070|ref|YP_003131903.1|	-	0.00097	19.1	0.0	0.003	17.5	0.0	1.7	2	0	0	2	2	2	1	MraZ	protein,	putative	antitoxin-like
MazE_antitoxin	PF04014.18	gi|257054070|ref|YP_003131903.1|	-	0.036	14.0	0.0	0.089	12.8	0.0	1.9	1	1	0	1	1	1	0	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
PIN	PF01850.21	gi|257054071|ref|YP_003131904.1|	-	3.8e-08	33.9	2.0	4.7e-08	33.6	2.0	1.1	1	0	0	1	1	1	1	PIN	domain
AAA	PF00004.29	gi|257054072|ref|YP_003131905.1|	-	1.9e-11	44.5	0.0	5.7e-11	43.0	0.0	1.9	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
RuvB_N	PF05496.12	gi|257054072|ref|YP_003131905.1|	-	8.4e-06	25.6	0.0	6.6e-05	22.7	0.0	2.2	2	0	0	2	2	2	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_22	PF13401.6	gi|257054072|ref|YP_003131905.1|	-	5.2e-05	23.5	0.0	0.36	11.1	0.0	3.1	2	1	1	3	3	3	2	AAA	domain
AAA_16	PF13191.6	gi|257054072|ref|YP_003131905.1|	-	0.00013	22.5	0.0	0.0047	17.3	0.0	2.9	2	1	1	3	3	3	1	AAA	ATPase	domain
IstB_IS21	PF01695.17	gi|257054072|ref|YP_003131905.1|	-	0.00018	21.3	0.0	0.00068	19.4	0.0	1.8	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
AAA_assoc_2	PF16193.5	gi|257054072|ref|YP_003131905.1|	-	0.00041	20.6	1.6	0.0013	19.1	0.3	2.5	2	1	0	2	2	2	1	AAA	C-terminal	domain
AAA_5	PF07728.14	gi|257054072|ref|YP_003131905.1|	-	0.0024	17.9	0.0	0.0081	16.2	0.0	1.9	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA_25	PF13481.6	gi|257054072|ref|YP_003131905.1|	-	0.0037	16.9	0.3	0.11	12.1	0.0	2.6	1	1	1	2	2	2	1	AAA	domain
AAA_28	PF13521.6	gi|257054072|ref|YP_003131905.1|	-	0.0074	16.5	0.0	0.028	14.7	0.0	2.0	1	0	0	1	1	1	1	AAA	domain
AAA_14	PF13173.6	gi|257054072|ref|YP_003131905.1|	-	0.02	14.9	0.0	0.07	13.2	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
HEAT_2	PF13646.6	gi|257054072|ref|YP_003131905.1|	-	0.024	15.0	1.9	1.3	9.5	0.0	3.5	3	0	0	3	3	3	0	HEAT	repeats
RNA_helicase	PF00910.22	gi|257054072|ref|YP_003131905.1|	-	0.024	15.0	0.0	0.079	13.4	0.0	1.8	2	0	0	2	2	2	0	RNA	helicase
DUF815	PF05673.13	gi|257054072|ref|YP_003131905.1|	-	0.035	13.2	0.0	0.075	12.2	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
Bac_DnaA	PF00308.18	gi|257054072|ref|YP_003131905.1|	-	0.053	13.3	0.0	0.39	10.5	0.0	2.0	2	0	0	2	2	2	0	Bacterial	dnaA	protein
Zeta_toxin	PF06414.12	gi|257054072|ref|YP_003131905.1|	-	0.065	12.5	0.0	0.12	11.6	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
AAA_24	PF13479.6	gi|257054072|ref|YP_003131905.1|	-	0.071	12.8	0.0	0.15	11.8	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|257054072|ref|YP_003131905.1|	-	0.1	12.5	0.0	0.73	9.7	0.0	2.0	2	0	0	2	2	2	0	NACHT	domain
TFX_C	PF14601.6	gi|257054072|ref|YP_003131905.1|	-	0.11	12.5	0.5	4.8	7.2	0.0	2.8	2	0	0	2	2	2	0	DNA_binding	protein,	TFX,	C-term
Mg_chelatase	PF01078.21	gi|257054072|ref|YP_003131905.1|	-	0.14	11.5	0.0	0.23	10.8	0.0	1.4	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
RsgA_GTPase	PF03193.16	gi|257054072|ref|YP_003131905.1|	-	0.16	11.8	0.0	0.33	10.9	0.0	1.4	1	0	0	1	1	1	0	RsgA	GTPase
TPR_14	PF13428.6	gi|257054072|ref|YP_003131905.1|	-	3.5	8.7	6.7	4	8.5	0.1	3.8	4	0	0	4	4	3	0	Tetratricopeptide	repeat
PQQ_2	PF13360.6	gi|257054073|ref|YP_003131906.1|	-	2.3e-50	171.4	14.2	4.6e-25	88.6	0.9	3.2	1	1	2	3	3	3	3	PQQ-like	domain
PQQ_3	PF13570.6	gi|257054073|ref|YP_003131906.1|	-	1.4e-42	143.2	29.3	1.5e-05	25.3	0.0	8.3	8	0	0	8	8	8	8	PQQ-like	domain
PQQ	PF01011.21	gi|257054073|ref|YP_003131906.1|	-	9.5e-30	101.1	9.6	2.2e-05	24.1	0.0	8.1	6	1	0	7	7	7	7	PQQ	enzyme	repeat
DUF5050	PF16472.5	gi|257054073|ref|YP_003131906.1|	-	0.026	13.8	0.0	0.077	12.2	0.0	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF5050)
COX15-CtaA	PF02628.15	gi|257054074|ref|YP_003131907.1|	-	2.4e-11	43.3	26.3	2.5e-11	43.2	12.0	3.5	2	2	0	2	2	2	1	Cytochrome	oxidase	assembly	protein
MerC	PF03203.14	gi|257054074|ref|YP_003131907.1|	-	0.00063	20.2	3.5	0.00063	20.2	3.5	3.3	1	1	1	2	2	2	1	MerC	mercury	resistance	protein
DUF998	PF06197.13	gi|257054074|ref|YP_003131907.1|	-	9.1	5.8	38.8	2.8	7.5	19.2	3.1	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF998)
PTA_PTB	PF01515.19	gi|257054075|ref|YP_003131908.1|	-	1.1e-88	297.7	0.0	1.4e-88	297.2	0.0	1.1	1	0	0	1	1	1	1	Phosphate	acetyl/butaryl	transferase
malic	PF00390.19	gi|257054075|ref|YP_003131908.1|	-	2.6e-27	95.8	0.0	5.5e-25	88.2	0.0	2.5	1	1	0	1	1	1	1	Malic	enzyme,	N-terminal	domain
Malic_M	PF03949.15	gi|257054075|ref|YP_003131908.1|	-	1.5e-18	67.0	2.2	3.8e-18	65.7	1.3	2.2	2	1	0	2	2	2	1	Malic	enzyme,	NAD	binding	domain
HTH_31	PF13560.6	gi|257054075|ref|YP_003131908.1|	-	0.039	14.3	0.3	0.18	12.2	0.3	2.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
RVT_3	PF13456.6	gi|257054076|ref|YP_003131909.1|	-	5.9e-05	22.9	0.0	9.5e-05	22.2	0.0	1.3	1	0	0	1	1	1	1	Reverse	transcriptase-like
IL11	PF07400.11	gi|257054076|ref|YP_003131909.1|	-	0.046	13.4	0.0	0.069	12.8	0.0	1.2	1	0	0	1	1	1	0	Interleukin	11
RNase_H	PF00075.24	gi|257054076|ref|YP_003131909.1|	-	0.23	11.7	0.0	0.33	11.1	0.0	1.3	1	0	0	1	1	1	0	RNase	H
Oxidored_FMN	PF00724.20	gi|257054077|ref|YP_003131910.1|	-	5.6e-71	239.6	0.0	7e-71	239.3	0.0	1.1	1	0	0	1	1	1	1	NADH:flavin	oxidoreductase	/	NADH	oxidase	family
NanE	PF04131.14	gi|257054077|ref|YP_003131910.1|	-	0.025	13.8	0.0	0.036	13.2	0.0	1.3	1	0	0	1	1	1	0	Putative	N-acetylmannosamine-6-phosphate	epimerase
Dus	PF01207.17	gi|257054077|ref|YP_003131910.1|	-	0.19	10.8	0.0	0.44	9.6	0.0	1.6	1	1	0	1	1	1	0	Dihydrouridine	synthase	(Dus)
Usp	PF00582.26	gi|257054078|ref|YP_003131911.1|	-	8.4e-57	191.6	12.3	1.8e-29	103.1	1.5	2.2	2	0	0	2	2	2	2	Universal	stress	protein	family
GHMP_kinases_N	PF00288.26	gi|257054079|ref|YP_003131912.1|	-	1.3e-14	54.1	0.1	3.7e-14	52.7	0.1	1.7	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.13	gi|257054079|ref|YP_003131912.1|	-	2.2e-13	50.4	0.2	6.9e-13	48.8	0.2	1.8	1	0	0	1	1	1	1	GHMP	kinases	C	terminal
GalKase_gal_bdg	PF10509.9	gi|257054079|ref|YP_003131912.1|	-	5.5e-13	48.2	0.0	1.7e-12	46.7	0.0	1.8	1	0	0	1	1	1	1	Galactokinase	galactose-binding	signature
Epimerase	PF01370.21	gi|257054080|ref|YP_003131913.1|	-	1.9e-44	152.0	0.0	2.2e-44	151.7	0.0	1.0	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|257054080|ref|YP_003131913.1|	-	3.6e-34	118.7	0.0	2e-33	116.2	0.0	1.9	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
RmlD_sub_bind	PF04321.17	gi|257054080|ref|YP_003131913.1|	-	2.7e-13	49.7	0.0	3.5e-13	49.3	0.0	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.19	gi|257054080|ref|YP_003131913.1|	-	2.2e-12	46.6	0.0	3.1e-12	46.1	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.15	gi|257054080|ref|YP_003131913.1|	-	4.1e-11	42.6	0.0	3.4e-10	39.6	0.0	2.2	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_10	PF13460.6	gi|257054080|ref|YP_003131913.1|	-	5.4e-10	39.4	0.0	8.2e-10	38.9	0.0	1.2	1	0	0	1	1	1	1	NAD(P)H-binding
TrkA_N	PF02254.18	gi|257054080|ref|YP_003131913.1|	-	4.6e-07	30.1	0.9	8.8e-07	29.2	0.7	1.6	2	0	0	2	2	2	1	TrkA-N	domain
NAD_binding_4	PF07993.12	gi|257054080|ref|YP_003131913.1|	-	2.6e-05	23.5	0.1	0.0068	15.6	0.0	2.7	1	1	1	2	2	2	2	Male	sterility	protein
adh_short	PF00106.25	gi|257054080|ref|YP_003131913.1|	-	0.00061	19.3	1.1	0.00097	18.6	0.4	1.7	2	1	0	2	2	2	1	short	chain	dehydrogenase
NmrA	PF05368.13	gi|257054080|ref|YP_003131913.1|	-	0.0036	16.9	0.7	0.013	15.1	0.4	1.9	2	0	0	2	2	2	1	NmrA-like	family
DUF1188	PF06690.11	gi|257054080|ref|YP_003131913.1|	-	0.023	14.2	0.0	0.038	13.5	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1188)
Methyltransf_17	PF12692.7	gi|257054080|ref|YP_003131913.1|	-	0.14	12.1	0.0	0.27	11.2	0.0	1.4	1	0	0	1	1	1	0	S-adenosyl-L-methionine	methyltransferase
Response_reg	PF00072.24	gi|257054081|ref|YP_003131914.1|	-	3e-20	72.5	0.0	8e-20	71.1	0.0	1.7	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HATPase_c	PF02518.26	gi|257054081|ref|YP_003131914.1|	-	4.6e-18	65.8	0.1	1.2e-17	64.4	0.1	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_4	PF08448.10	gi|257054081|ref|YP_003131914.1|	-	9.2e-09	35.5	0.1	2e-08	34.4	0.1	1.6	1	0	0	1	1	1	1	PAS	fold
HATPase_c_2	PF13581.6	gi|257054081|ref|YP_003131914.1|	-	1.9e-08	34.3	0.3	1.5e-07	31.4	0.1	2.4	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
PAS	PF00989.25	gi|257054081|ref|YP_003131914.1|	-	1.8e-06	27.9	0.0	3.5e-06	27.0	0.0	1.5	1	0	0	1	1	1	1	PAS	fold
PAS_9	PF13426.7	gi|257054081|ref|YP_003131914.1|	-	9.1e-05	22.7	0.0	0.00027	21.1	0.0	1.9	1	0	0	1	1	1	1	PAS	domain
HATPase_c_5	PF14501.6	gi|257054081|ref|YP_003131914.1|	-	0.00021	21.1	0.0	0.00059	19.7	0.0	1.7	1	0	0	1	1	1	1	GHKL	domain
HisKA	PF00512.25	gi|257054081|ref|YP_003131914.1|	-	0.0011	19.0	0.0	0.0034	17.4	0.0	1.8	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
HisKA_4TM	PF16926.5	gi|257054081|ref|YP_003131914.1|	-	0.0025	17.4	0.0	0.0048	16.5	0.0	1.5	1	0	0	1	1	1	1	Archaeal	4TM	region	of	histidine	kinase
HATPase_c_3	PF13589.6	gi|257054081|ref|YP_003131914.1|	-	0.071	12.9	0.0	0.16	11.8	0.0	1.5	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
SPOB_a	PF14689.6	gi|257054081|ref|YP_003131914.1|	-	0.076	12.7	1.4	0.27	11.0	1.4	2.0	1	1	0	1	1	1	0	Sensor_kinase_SpoOB-type,	alpha-helical	domain
Apolipoprotein	PF01442.18	gi|257054082|ref|YP_003131915.1|	-	0.0022	17.9	2.1	0.0045	16.9	2.1	1.5	1	1	0	1	1	1	1	Apolipoprotein	A1/A4/E	domain
CsbD	PF05532.12	gi|257054082|ref|YP_003131915.1|	-	0.0031	17.4	1.0	0.15	12.0	0.8	2.4	1	1	1	2	2	2	2	CsbD-like
DUF883	PF05957.13	gi|257054082|ref|YP_003131915.1|	-	0.006	17.2	2.0	0.18	12.4	0.4	2.1	2	0	0	2	2	2	1	Bacterial	protein	of	unknown	function	(DUF883)
YtxH	PF12732.7	gi|257054082|ref|YP_003131915.1|	-	0.084	13.4	1.5	4.6	7.8	0.2	2.0	2	0	0	2	2	2	0	YtxH-like	protein
Cob_adeno_trans	PF01923.18	gi|257054083|ref|YP_003131916.1|	-	1.9e-55	187.4	0.0	2.2e-55	187.3	0.0	1.0	1	0	0	1	1	1	1	Cobalamin	adenosyltransferase
Response_reg	PF00072.24	gi|257054084|ref|YP_003131917.1|	-	1.6e-16	60.5	0.0	1.9e-16	60.2	0.0	1.1	1	0	0	1	1	1	1	Response	regulator	receiver	domain
OKR_DC_1_N	PF03709.15	gi|257054084|ref|YP_003131917.1|	-	0.00023	21.4	0.3	0.0005	20.3	0.2	1.6	1	1	1	2	2	2	2	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
FleQ	PF06490.11	gi|257054084|ref|YP_003131917.1|	-	0.02	15.3	0.0	0.021	15.2	0.0	1.1	1	0	0	1	1	1	0	Flagellar	regulatory	protein	FleQ
CM_2	PF01817.21	gi|257054085|ref|YP_003131918.1|	-	2.8e-14	53.2	4.6	3.3e-14	53.0	4.6	1.1	1	0	0	1	1	1	1	Chorismate	mutase	type	II
GHMP_kinases_N	PF00288.26	gi|257054086|ref|YP_003131919.1|	-	3.5e-10	40.0	5.8	3.5e-10	40.0	5.8	2.1	2	0	0	2	2	2	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.13	gi|257054086|ref|YP_003131919.1|	-	0.011	16.1	0.2	0.042	14.2	0.0	2.1	2	0	0	2	2	2	0	GHMP	kinases	C	terminal
Qn_am_d_aII	PF14930.6	gi|257054087|ref|YP_003131920.1|	-	0.12	12.7	0.3	4.8	7.6	0.1	2.1	1	1	0	2	2	2	0	Quinohemoprotein	amine	dehydrogenase,	alpha	subunit	domain	II
zf-C2H2_3	PF13878.6	gi|257054088|ref|YP_003131921.1|	-	0.061	13.2	2.7	0.12	12.2	2.7	1.6	1	1	0	1	1	1	0	zinc-finger	of	acetyl-transferase	ESCO
zf-C2H2	PF00096.26	gi|257054088|ref|YP_003131921.1|	-	0.15	12.6	0.1	0.2	12.2	0.1	1.3	1	0	0	1	1	1	0	Zinc	finger,	C2H2	type
#
# Program:         hmmscan
# Version:         3.2.1 (June 2018)
# Pipeline mode:   SCAN
# Query file:      /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halorhabdus_utahensis_DSM_12940_uid59189/NC_013158.faa
# Target file:     /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm
# Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halorhabdus_utahensis_DSM_12940_uid59189/NC_013158.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halorhabdus_utahensis_DSM_12940_uid59189/NC_013158.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halorhabdus_utahensis_DSM_12940_uid59189/NC_013158.faa 
# Current dir:     /oak/stanford/groups/akundaje/marinovg/genomes
# Date:            Mon Mar 25 13:02:19 2019
# [ok]