#                                                                           --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                       accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------             -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
AAA_assoc_2	PF16193.5	gi|529043438|ref|YP_008369657.1|	-	7.1e-05	23.1	4.6	0.00018	21.8	1.0	2.5	2	0	0	2	2	2	1	AAA	C-terminal	domain
Penicillinase_R	PF03965.16	gi|529043438|ref|YP_008369657.1|	-	0.001	19.4	0.0	0.0016	18.7	0.0	1.3	1	0	0	1	1	1	1	Penicillinase	repressor
HD_3	PF13023.6	gi|529043439|ref|YP_008369658.1|	-	0.059	13.3	0.1	0.059	13.3	0.1	1.0	1	0	0	1	1	1	0	HD	domain
Ppx-GppA	PF02541.16	gi|529043439|ref|YP_008369658.1|	-	0.13	11.7	0.0	0.14	11.6	0.0	1.0	1	0	0	1	1	1	0	Ppx/GppA	phosphatase	family
POB3_N	PF17292.2	gi|529043442|ref|YP_008369661.1|	-	0.069	13.6	0.0	0.18	12.3	0.0	1.6	2	0	0	2	2	2	0	POB3-like	N-terminal	PH	domain
Mrr_cat	PF04471.12	gi|529043443|ref|YP_008369662.1|	-	2e-05	24.6	0.1	4e-05	23.6	0.0	1.6	2	0	0	2	2	2	1	Restriction	endonuclease
FdhD-NarQ	PF02634.15	gi|529043443|ref|YP_008369662.1|	-	0.06	13.0	0.0	0.13	11.9	0.0	1.5	1	0	0	1	1	1	0	FdhD/NarQ	family
Siva	PF05458.12	gi|529043444|ref|YP_008369663.1|	-	0.0074	16.0	6.0	0.0074	16.0	6.0	12.6	3	2	10	13	13	13	1	Cd27	binding	protein	(Siva)
Salt_tol_Pase	PF09506.10	gi|529043444|ref|YP_008369663.1|	-	0.13	11.0	0.0	0.22	10.2	0.0	1.2	1	0	0	1	1	1	0	Glucosylglycerol-phosphate	phosphatase	(Salt_tol_Pase)
ADIP	PF11559.8	gi|529043444|ref|YP_008369663.1|	-	0.43	10.7	18.3	0.75	9.9	18.3	1.3	1	0	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
FapA	PF03961.13	gi|529043444|ref|YP_008369663.1|	-	0.71	8.4	6.5	1.1	7.8	6.5	1.1	1	0	0	1	1	1	0	Flagellar	Assembly	Protein	A
Syntaxin-6_N	PF09177.11	gi|529043444|ref|YP_008369663.1|	-	2.6	8.6	14.0	2.6e+02	2.3	14.0	2.4	1	1	0	1	1	1	0	Syntaxin	6,	N-terminal
ALMT	PF11744.8	gi|529043444|ref|YP_008369663.1|	-	3.6	6.3	7.3	4.9	5.9	7.3	1.1	1	0	0	1	1	1	0	Aluminium	activated	malate	transporter
Troponin	PF00992.20	gi|529043444|ref|YP_008369663.1|	-	6.1	7.2	17.5	11	6.3	17.5	1.4	1	0	0	1	1	1	0	Troponin
Exonuc_VII_L	PF02601.15	gi|529043444|ref|YP_008369663.1|	-	7.4	6.0	9.3	11	5.4	9.3	1.1	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
SNF2_N	PF00176.23	gi|529043445|ref|YP_008369664.1|	-	8.1e-29	100.4	0.1	1.8e-28	99.3	0.0	1.6	2	0	0	2	2	2	1	SNF2	family	N-terminal	domain
Helicase_C	PF00271.31	gi|529043445|ref|YP_008369664.1|	-	9.8e-19	67.7	0.6	3.5e-18	66.0	0.1	2.1	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|529043445|ref|YP_008369664.1|	-	1.3e-05	25.2	0.0	5.1e-05	23.3	0.0	2.0	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C_2	PF13307.6	gi|529043445|ref|YP_008369664.1|	-	0.014	15.5	0.4	0.43	10.7	0.1	2.4	1	1	1	2	2	2	0	Helicase	C-terminal	domain
IL13	PF03487.13	gi|529043445|ref|YP_008369664.1|	-	0.2	11.5	0.3	0.49	10.2	0.3	1.6	1	0	0	1	1	1	0	Interleukin-13
Ssu72	PF04722.13	gi|529043445|ref|YP_008369664.1|	-	0.83	9.2	5.4	2.1	7.9	0.3	3.1	3	1	0	3	3	3	0	Ssu72-like	protein
ResIII	PF04851.15	gi|529043446|ref|YP_008369665.1|	-	4.5e-20	72.3	0.0	1e-19	71.2	0.0	1.6	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.29	gi|529043446|ref|YP_008369665.1|	-	1.6e-07	31.3	0.0	2.7e-07	30.5	0.0	1.4	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|529043446|ref|YP_008369665.1|	-	1.7e-05	25.1	0.0	8.9e-05	22.8	0.0	2.2	2	1	0	2	2	2	1	Helicase	conserved	C-terminal	domain
SWI2_SNF2	PF18766.1	gi|529043446|ref|YP_008369665.1|	-	0.0016	18.2	0.0	0.004	16.9	0.0	1.6	1	0	0	1	1	1	1	SWI2/SNF2	ATPase
ERCC3_RAD25_C	PF16203.5	gi|529043446|ref|YP_008369665.1|	-	0.0017	17.6	0.0	0.012	14.8	0.0	2.1	2	0	0	2	2	2	1	ERCC3/RAD25/XPB	C-terminal	helicase
DUF2075	PF09848.9	gi|529043446|ref|YP_008369665.1|	-	0.031	13.5	0.0	0.061	12.5	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
VWA	PF00092.28	gi|529043447|ref|YP_008369666.1|	-	9.1e-13	48.8	1.3	3.5e-12	46.9	1.3	1.9	1	1	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA_2	PF13519.6	gi|529043447|ref|YP_008369666.1|	-	1.4e-12	48.2	0.1	3.5e-12	46.9	0.1	1.7	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
vWA-TerF-like	PF10138.9	gi|529043447|ref|YP_008369666.1|	-	1.8e-06	28.2	0.8	5.1e-05	23.5	0.8	2.2	1	1	0	1	1	1	1	vWA	found	in	TerF	C	terminus
VWA_3	PF13768.6	gi|529043447|ref|YP_008369666.1|	-	0.001	19.0	0.5	0.0038	17.2	0.1	2.0	2	0	0	2	2	2	1	von	Willebrand	factor	type	A	domain
VWA_CoxE	PF05762.14	gi|529043447|ref|YP_008369666.1|	-	0.0094	15.4	2.0	0.12	11.7	0.2	2.3	1	1	1	2	2	2	1	VWA	domain	containing	CoxE-like	protein
DUF1610	PF07754.11	gi|529043447|ref|YP_008369666.1|	-	0.0099	15.8	0.2	0.024	14.6	0.2	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1610)
Zn-ribbon_8	PF09723.10	gi|529043447|ref|YP_008369666.1|	-	0.65	10.2	3.1	4.2	7.6	0.2	2.5	2	0	0	2	2	2	0	Zinc	ribbon	domain
UvrD-helicase	PF00580.21	gi|529043448|ref|YP_008369667.1|	-	2.1e-44	152.4	0.9	2.1e-44	152.4	0.9	2.8	2	1	0	2	2	2	1	UvrD/REP	helicase	N-terminal	domain
AAA_19	PF13245.6	gi|529043448|ref|YP_008369667.1|	-	1.5e-26	93.5	0.2	4.9e-14	52.9	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
UvrD_C	PF13361.6	gi|529043448|ref|YP_008369667.1|	-	1.2e-14	54.5	0.3	8.2e-12	45.2	0.0	3.3	2	1	1	3	3	3	2	UvrD-like	helicase	C-terminal	domain
AAA_30	PF13604.6	gi|529043448|ref|YP_008369667.1|	-	1.4e-07	31.5	0.2	9.4e-05	22.2	0.0	2.8	2	0	0	2	2	2	2	AAA	domain
AAA_12	PF13087.6	gi|529043448|ref|YP_008369667.1|	-	2e-06	27.5	0.0	5.9e-05	22.8	0.0	2.7	2	0	0	2	2	2	1	AAA	domain
UvrD_C_2	PF13538.6	gi|529043448|ref|YP_008369667.1|	-	2.1e-06	27.4	0.2	6.7e-05	22.6	0.2	2.7	1	1	0	1	1	1	1	UvrD-like	helicase	C-terminal	domain
Viral_helicase1	PF01443.18	gi|529043448|ref|YP_008369667.1|	-	0.011	15.5	0.1	1.6	8.4	0.1	3.8	2	1	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
ResIII	PF04851.15	gi|529043448|ref|YP_008369667.1|	-	0.019	15.0	0.0	0.062	13.3	0.0	1.9	1	0	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
YfdX	PF10938.8	gi|529043448|ref|YP_008369667.1|	-	0.051	13.5	0.2	0.45	10.4	0.1	2.4	2	0	0	2	2	2	0	YfdX	protein
YtxH	PF12732.7	gi|529043448|ref|YP_008369667.1|	-	1.3	9.6	3.1	1.5e+02	3.0	0.0	4.6	4	0	0	4	4	4	0	YtxH-like	protein
DUF2524	PF10732.9	gi|529043448|ref|YP_008369667.1|	-	3.6	7.9	8.9	3.6	8.0	0.2	4.1	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF2524)
ADP_ribosyl_GH	PF03747.14	gi|529043449|ref|YP_008369668.1|	-	2.5e-55	188.3	0.4	2.9e-55	188.1	0.4	1.0	1	0	0	1	1	1	1	ADP-ribosylglycohydrolase
Rick_17kDa_Anti	PF05433.15	gi|529043449|ref|YP_008369668.1|	-	0.028	14.3	2.3	0.053	13.4	2.3	1.5	1	0	0	1	1	1	0	Glycine	zipper	2TM	domain
SurE	PF01975.17	gi|529043449|ref|YP_008369668.1|	-	0.1	12.4	0.0	0.13	12.0	0.0	1.2	1	0	0	1	1	1	0	Survival	protein	SurE
YdjM	PF04307.14	gi|529043450|ref|YP_008369669.1|	-	1.2e-13	50.7	11.4	3.2e-13	49.3	11.4	1.6	1	1	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
OrfB_IS605	PF01385.19	gi|529043451|ref|YP_008369670.1|	-	7.4e-25	87.5	0.2	1.7e-24	86.3	0.0	1.7	2	0	0	2	2	2	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|529043451|ref|YP_008369670.1|	-	7.3e-21	73.9	4.1	9.9e-21	73.5	1.4	2.2	2	0	0	2	2	2	1	Putative	transposase	DNA-binding	domain
C1_2	PF03107.16	gi|529043451|ref|YP_008369670.1|	-	0.0065	16.8	1.1	0.017	15.4	1.1	1.7	1	0	0	1	1	1	1	C1	domain
A2L_zn_ribbon	PF08792.10	gi|529043451|ref|YP_008369670.1|	-	0.076	12.8	1.9	0.19	11.5	1.9	1.7	1	0	0	1	1	1	0	A2L	zinc	ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|529043451|ref|YP_008369670.1|	-	0.09	12.3	7.2	0.13	11.8	5.5	2.2	2	0	0	2	2	2	0	TFIIB	zinc-binding
zf-C4_ClpX	PF06689.13	gi|529043451|ref|YP_008369670.1|	-	0.36	10.8	5.6	1.3	8.9	5.6	2.0	1	1	0	1	1	1	0	ClpX	C4-type	zinc	finger
Zn_Tnp_IS1595	PF12760.7	gi|529043451|ref|YP_008369670.1|	-	1.1	9.3	5.7	0.77	9.8	2.9	2.2	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
DDE_3	PF13358.6	gi|529043452|ref|YP_008369671.1|	-	3.4e-14	52.8	0.0	2.6e-13	50.0	0.0	2.1	2	0	0	2	2	2	1	DDE	superfamily	endonuclease
HTH_32	PF13565.6	gi|529043452|ref|YP_008369671.1|	-	3.5e-10	40.4	2.8	5.1e-10	39.8	0.1	2.5	2	1	1	3	3	3	1	Homeodomain-like	domain
HTH_29	PF13551.6	gi|529043452|ref|YP_008369671.1|	-	1.8e-09	37.5	0.0	4.5e-09	36.2	0.0	1.7	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|529043452|ref|YP_008369671.1|	-	2.8e-08	33.3	0.2	1.4e-07	31.1	0.0	2.2	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_33	PF13592.6	gi|529043452|ref|YP_008369671.1|	-	2.1e-06	27.3	0.0	9.6e-06	25.1	0.0	2.1	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_28	PF13518.6	gi|529043452|ref|YP_008369671.1|	-	5.3e-06	26.5	0.0	1.2e-05	25.3	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
DDE_1	PF03184.19	gi|529043452|ref|YP_008369671.1|	-	0.0012	18.6	0.0	0.002	17.8	0.0	1.3	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
HTH_7	PF02796.15	gi|529043452|ref|YP_008369671.1|	-	0.0051	16.9	0.2	0.015	15.3	0.1	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain	of	resolvase
rve	PF00665.26	gi|529043452|ref|YP_008369671.1|	-	0.095	12.9	0.0	0.2	11.8	0.0	1.4	1	0	0	1	1	1	0	Integrase	core	domain
HTH_31	PF13560.6	gi|529043452|ref|YP_008369671.1|	-	0.1	13.0	0.1	0.42	11.0	0.1	2.0	1	1	0	1	1	1	0	Helix-turn-helix	domain
Mub_B2	PF17966.1	gi|529043456|ref|YP_008369675.1|	-	0.059	14.1	0.2	0.068	13.9	0.2	1.2	1	0	0	1	1	1	0	Mub	B2-like	domain
TrmB	PF01978.19	gi|529043458|ref|YP_008369677.1|	-	0.0081	16.0	0.0	0.014	15.2	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
FaeA	PF04703.12	gi|529043458|ref|YP_008369677.1|	-	0.0097	16.3	0.0	0.019	15.3	0.0	1.5	1	0	0	1	1	1	1	FaeA-like	protein
HTH_IclR	PF09339.10	gi|529043458|ref|YP_008369677.1|	-	0.1	12.4	0.0	0.22	11.4	0.0	1.5	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
DUF2951	PF11166.8	gi|529043458|ref|YP_008369677.1|	-	0.16	12.2	0.1	0.24	11.7	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2951)
DUF692	PF05114.13	gi|529043458|ref|YP_008369677.1|	-	0.18	11.0	0.0	0.24	10.6	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF692)
DUF3006	PF11213.8	gi|529043460|ref|YP_008369679.1|	-	6.2e-17	61.6	1.0	7.4e-17	61.3	1.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3006)
LTD	PF00932.19	gi|529043461|ref|YP_008369680.1|	-	1.5e-23	83.3	2.7	1.6e-23	83.2	0.4	2.3	3	0	0	3	3	3	1	Lamin	Tail	Domain
Lactamase_B	PF00753.27	gi|529043461|ref|YP_008369680.1|	-	5e-16	59.3	2.2	1.4e-15	57.8	2.2	1.8	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|529043461|ref|YP_008369680.1|	-	0.0038	16.8	0.7	0.017	14.6	0.1	2.2	3	0	0	3	3	3	1	Beta-lactamase	superfamily	domain
Lactamase_B_6	PF16661.5	gi|529043461|ref|YP_008369680.1|	-	0.0067	15.9	0.0	0.012	15.1	0.0	1.4	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily	domain
Nro1	PF12753.7	gi|529043463|ref|YP_008369682.1|	-	0.018	14.0	0.0	0.018	14.0	0.0	1.1	1	0	0	1	1	1	0	Nuclear	pore	complex	subunit	Nro1
UPF0236	PF06782.11	gi|529043464|ref|YP_008369683.1|	-	2.3e-06	26.5	0.0	0.00018	20.3	0.0	2.2	2	0	0	2	2	2	2	Uncharacterised	protein	family	(UPF0236)
Transposase_mut	PF00872.18	gi|529043464|ref|YP_008369683.1|	-	0.0028	16.6	0.3	2.8	6.7	0.1	2.8	2	2	0	2	2	2	2	Transposase,	Mutator	family
DDE_Tnp_IS66	PF03050.14	gi|529043464|ref|YP_008369683.1|	-	0.0032	17.0	0.1	0.0046	16.5	0.1	1.2	1	0	0	1	1	1	1	Transposase	IS66	family
UPF0236	PF06782.11	gi|529043466|ref|YP_008369685.1|	-	2.3e-06	26.5	0.0	0.00018	20.3	0.0	2.2	2	0	0	2	2	2	2	Uncharacterised	protein	family	(UPF0236)
Transposase_mut	PF00872.18	gi|529043466|ref|YP_008369685.1|	-	0.0028	16.6	0.3	2.8	6.7	0.1	2.8	2	2	0	2	2	2	2	Transposase,	Mutator	family
DDE_Tnp_IS66	PF03050.14	gi|529043466|ref|YP_008369685.1|	-	0.0032	17.0	0.1	0.0046	16.5	0.1	1.2	1	0	0	1	1	1	1	Transposase	IS66	family
HTH_20	PF12840.7	gi|529043467|ref|YP_008369686.1|	-	1.4e-11	44.3	0.2	2.2e-11	43.7	0.2	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|529043467|ref|YP_008369686.1|	-	3.8e-06	26.7	0.1	7.2e-06	25.8	0.1	1.5	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.6	gi|529043467|ref|YP_008369686.1|	-	2.1e-05	24.9	0.0	3.5e-05	24.2	0.0	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.19	gi|529043467|ref|YP_008369686.1|	-	9.5e-05	22.2	0.0	0.00015	21.6	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
TFIIE_alpha	PF02002.17	gi|529043467|ref|YP_008369686.1|	-	0.00015	21.6	0.0	0.00018	21.3	0.0	1.1	1	0	0	1	1	1	1	TFIIE	alpha	subunit
HTH_34	PF13601.6	gi|529043467|ref|YP_008369686.1|	-	0.0003	20.9	0.0	0.00044	20.4	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
MarR	PF01047.22	gi|529043467|ref|YP_008369686.1|	-	0.00062	19.6	0.0	0.0012	18.8	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|529043467|ref|YP_008369686.1|	-	0.0034	16.9	0.0	0.0057	16.2	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|529043467|ref|YP_008369686.1|	-	0.0071	16.2	0.0	0.011	15.5	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_micro	PF17007.5	gi|529043467|ref|YP_008369686.1|	-	0.0093	14.8	0.0	0.0094	14.8	0.0	1.0	1	0	0	1	1	1	1	HTH-like
B-block_TFIIIC	PF04182.12	gi|529043467|ref|YP_008369686.1|	-	0.011	15.9	0.0	0.018	15.2	0.0	1.3	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
DUF2513	PF10711.9	gi|529043467|ref|YP_008369686.1|	-	0.092	13.1	0.0	0.12	12.7	0.0	1.2	1	0	0	1	1	1	0	Hypothetical	protein	(DUF2513)
PIN	PF01850.21	gi|529043468|ref|YP_008369687.1|	-	6.6e-10	39.5	0.2	7.5e-10	39.4	0.2	1.0	1	0	0	1	1	1	1	PIN	domain
MazE_antitoxin	PF04014.18	gi|529043469|ref|YP_008369688.1|	-	3.1e-05	23.8	0.1	4.6e-05	23.2	0.1	1.3	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
PrlF_antitoxin	PF15937.5	gi|529043469|ref|YP_008369688.1|	-	8e-05	23.0	0.0	0.00013	22.3	0.0	1.3	1	0	0	1	1	1	1	prlF	antitoxin	for	toxin	YhaV_toxin
HTH_24	PF13412.6	gi|529043470|ref|YP_008369689.1|	-	0.011	15.3	0.2	0.017	14.7	0.2	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|529043470|ref|YP_008369689.1|	-	0.044	13.7	0.0	0.069	13.0	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
DUF3549	PF12069.8	gi|529043470|ref|YP_008369689.1|	-	0.048	12.7	0.0	0.072	12.1	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3549)
HTH_20	PF12840.7	gi|529043470|ref|YP_008369689.1|	-	0.071	13.2	0.1	0.37	10.9	0.0	1.9	2	0	0	2	2	2	0	Helix-turn-helix	domain
PLDc_N	PF13396.6	gi|529043472|ref|YP_008369691.1|	-	0.0012	18.7	1.5	0.0016	18.3	1.5	1.2	1	0	0	1	1	1	1	Phospholipase_D-nuclease	N-terminal
DUF1451	PF07295.11	gi|529043472|ref|YP_008369691.1|	-	0.0016	18.5	1.2	0.0017	18.4	1.2	1.1	1	0	0	1	1	1	1	Zinc-ribbon	containing	domain
Zn-ribbon_8	PF09723.10	gi|529043472|ref|YP_008369691.1|	-	0.0044	17.1	1.6	0.0077	16.3	1.6	1.4	1	0	0	1	1	1	1	Zinc	ribbon	domain
ADK_lid	PF05191.14	gi|529043472|ref|YP_008369691.1|	-	0.0078	16.2	2.2	0.015	15.3	2.2	1.4	1	0	0	1	1	1	1	Adenylate	kinase,	active	site	lid
Zn_Tnp_IS91	PF14319.6	gi|529043472|ref|YP_008369691.1|	-	0.019	15.0	0.6	0.022	14.8	0.6	1.1	1	0	0	1	1	1	0	Transposase	zinc-binding	domain
zf-TFIIB	PF13453.6	gi|529043472|ref|YP_008369691.1|	-	0.034	13.5	2.6	0.091	12.1	2.5	1.7	1	1	1	2	2	2	0	Transcription	factor	zinc-finger
HypA	PF01155.19	gi|529043472|ref|YP_008369691.1|	-	0.04	14.0	0.7	0.046	13.8	0.7	1.1	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DUF4379	PF14311.6	gi|529043472|ref|YP_008369691.1|	-	0.15	12.4	1.0	0.21	12.0	1.0	1.3	1	0	0	1	1	1	0	Probable	Zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|529043472|ref|YP_008369691.1|	-	0.22	11.1	3.1	0.36	10.4	3.1	1.4	1	0	0	1	1	1	0	TFIIB	zinc-binding
Nudix_N_2	PF14803.6	gi|529043472|ref|YP_008369691.1|	-	0.33	10.9	3.7	13	5.9	0.2	2.3	2	0	0	2	2	2	0	Nudix	N-terminal
zf-C2HC_2	PF13913.6	gi|529043473|ref|YP_008369692.1|	-	0.018	15.0	1.6	0.1	12.5	1.6	2.2	1	1	0	1	1	1	0	zinc-finger	of	a	C2HC-type
RNase_H_2	PF13482.6	gi|529043474|ref|YP_008369693.1|	-	3.8e-07	30.3	0.1	0.00019	21.5	0.0	2.6	1	1	1	2	2	2	2	RNase_H	superfamily
DNA_pol_B_exo2	PF10108.9	gi|529043474|ref|YP_008369693.1|	-	0.012	15.4	0.0	0.017	14.8	0.0	1.3	1	0	0	1	1	1	0	Predicted	3'-5'	exonuclease	related	to	the	exonuclease	domain	of	PolB
AAA_22	PF13401.6	gi|529043475|ref|YP_008369694.1|	-	5e-14	52.7	0.0	1.2e-13	51.6	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
Cdc6_C	PF09079.11	gi|529043475|ref|YP_008369694.1|	-	1e-09	38.2	0.1	5.6e-09	35.9	0.0	2.2	1	1	1	2	2	2	1	CDC6,	C	terminal	winged	helix	domain
AAA_16	PF13191.6	gi|529043475|ref|YP_008369694.1|	-	9e-09	35.9	1.0	9e-08	32.7	0.1	2.7	2	2	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.29	gi|529043475|ref|YP_008369694.1|	-	5.5e-06	26.8	0.1	1.8e-05	25.2	0.0	1.9	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
TniB	PF05621.11	gi|529043475|ref|YP_008369694.1|	-	0.0011	18.5	0.0	0.0018	17.7	0.0	1.3	1	0	0	1	1	1	1	Bacterial	TniB	protein
NACHT	PF05729.12	gi|529043475|ref|YP_008369694.1|	-	0.0014	18.6	0.0	0.0025	17.7	0.0	1.4	1	0	0	1	1	1	1	NACHT	domain
ATPase_2	PF01637.18	gi|529043475|ref|YP_008369694.1|	-	0.0015	18.5	0.0	0.0036	17.3	0.0	1.6	1	0	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
DEAD	PF00270.29	gi|529043475|ref|YP_008369694.1|	-	0.039	13.7	0.4	0.5	10.1	0.4	2.3	1	1	0	1	1	1	0	DEAD/DEAH	box	helicase
AAA_16	PF13191.6	gi|529043476|ref|YP_008369695.1|	-	2e-12	47.8	0.1	8.2e-12	45.8	0.1	2.1	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA	PF00004.29	gi|529043476|ref|YP_008369695.1|	-	1.5e-10	41.6	0.0	8.4e-10	39.2	0.0	2.3	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Cdc6_C	PF09079.11	gi|529043476|ref|YP_008369695.1|	-	5.3e-10	39.1	0.2	2.5e-09	37.0	0.0	2.3	2	0	0	2	2	2	1	CDC6,	C	terminal	winged	helix	domain
DUF815	PF05673.13	gi|529043476|ref|YP_008369695.1|	-	2.9e-05	23.4	0.0	5.7e-05	22.4	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
AAA_22	PF13401.6	gi|529043476|ref|YP_008369695.1|	-	3e-05	24.3	0.0	8.8e-05	22.8	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
ATPase_2	PF01637.18	gi|529043476|ref|YP_008369695.1|	-	6e-05	23.1	0.0	0.00019	21.4	0.0	1.9	2	1	0	2	2	2	1	ATPase	domain	predominantly	from	Archaea
Sigma54_activat	PF00158.26	gi|529043476|ref|YP_008369695.1|	-	0.0022	17.7	0.0	0.0049	16.6	0.0	1.6	1	0	0	1	1	1	1	Sigma-54	interaction	domain
TniB	PF05621.11	gi|529043476|ref|YP_008369695.1|	-	0.0024	17.3	0.0	0.017	14.6	0.0	2.1	1	1	0	1	1	1	1	Bacterial	TniB	protein
AAA_18	PF13238.6	gi|529043476|ref|YP_008369695.1|	-	0.0029	18.2	0.0	0.012	16.2	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
RNA_helicase	PF00910.22	gi|529043476|ref|YP_008369695.1|	-	0.0036	17.7	0.1	0.024	15.0	0.0	2.4	3	0	0	3	3	3	1	RNA	helicase
AAA_5	PF07728.14	gi|529043476|ref|YP_008369695.1|	-	0.013	15.5	0.1	0.092	12.7	0.1	2.3	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
Mg_chelatase	PF01078.21	gi|529043476|ref|YP_008369695.1|	-	0.015	14.6	0.0	0.035	13.5	0.0	1.6	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
ABC_tran	PF00005.27	gi|529043476|ref|YP_008369695.1|	-	0.024	15.2	0.0	0.072	13.6	0.0	1.9	2	1	0	2	2	2	0	ABC	transporter
NACHT	PF05729.12	gi|529043476|ref|YP_008369695.1|	-	0.027	14.4	0.0	0.098	12.6	0.0	1.8	1	1	0	1	1	1	0	NACHT	domain
PIF1	PF05970.14	gi|529043476|ref|YP_008369695.1|	-	0.034	13.3	0.0	0.053	12.7	0.0	1.4	1	0	0	1	1	1	0	PIF1-like	helicase
AAA_7	PF12775.7	gi|529043476|ref|YP_008369695.1|	-	0.036	13.6	0.0	0.086	12.4	0.0	1.6	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
IstB_IS21	PF01695.17	gi|529043476|ref|YP_008369695.1|	-	0.052	13.3	0.0	0.15	11.8	0.0	1.7	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
NB-ARC	PF00931.22	gi|529043476|ref|YP_008369695.1|	-	0.063	12.5	0.0	1.3	8.1	0.0	2.2	2	0	0	2	2	2	0	NB-ARC	domain
Sigma54_activ_2	PF14532.6	gi|529043476|ref|YP_008369695.1|	-	0.072	13.2	0.0	0.14	12.2	0.0	1.5	1	0	0	1	1	1	0	Sigma-54	interaction	domain
AAA_25	PF13481.6	gi|529043476|ref|YP_008369695.1|	-	0.088	12.4	1.7	0.36	10.4	0.3	2.5	2	1	0	2	2	2	0	AAA	domain
DDE_Tnp_IS66	PF03050.14	gi|529043477|ref|YP_008369696.1|	-	4.8e-49	167.3	0.1	4.8e-49	167.3	0.1	1.6	2	0	0	2	2	2	1	Transposase	IS66	family
zf-IS66	PF13005.7	gi|529043477|ref|YP_008369696.1|	-	7.4e-06	26.3	2.6	2.1e-05	24.8	2.6	1.8	1	0	0	1	1	1	1	zinc-finger	binding	domain	of	transposase	IS66
GAS	PF13851.6	gi|529043477|ref|YP_008369696.1|	-	0.00063	19.2	4.5	0.0012	18.2	4.5	1.3	1	0	0	1	1	1	1	Growth-arrest	specific	micro-tubule	binding
bZIP_1	PF00170.21	gi|529043477|ref|YP_008369696.1|	-	0.0022	18.0	4.7	0.005	16.9	4.7	1.6	1	0	0	1	1	1	1	bZIP	transcription	factor
Csm1_N	PF18504.1	gi|529043477|ref|YP_008369696.1|	-	0.0048	17.2	2.4	0.013	15.8	2.4	1.7	1	0	0	1	1	1	1	Csm1	N-terminal	domain
ATG16	PF08614.11	gi|529043477|ref|YP_008369696.1|	-	0.0062	16.8	2.2	0.0062	16.8	2.2	2.4	3	0	0	3	3	2	1	Autophagy	protein	16	(ATG16)
CENP-F_leu_zip	PF10473.9	gi|529043477|ref|YP_008369696.1|	-	0.0065	16.5	7.2	0.017	15.2	7.2	1.6	1	0	0	1	1	1	1	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Tropomyosin_1	PF12718.7	gi|529043477|ref|YP_008369696.1|	-	0.0075	16.4	3.9	0.016	15.3	3.9	1.5	1	0	0	1	1	1	1	Tropomyosin	like
Angiomotin_C	PF12240.8	gi|529043477|ref|YP_008369696.1|	-	0.01	15.4	0.4	0.019	14.5	0.4	1.4	1	0	0	1	1	1	0	Angiomotin	C	terminal
MCC-bdg_PDZ	PF10506.9	gi|529043477|ref|YP_008369696.1|	-	0.03	14.3	3.2	0.077	13.0	3.2	1.7	1	0	0	1	1	1	0	PDZ	domain	of	MCC-2	bdg	protein	for	Usher	syndrome
Troponin	PF00992.20	gi|529043477|ref|YP_008369696.1|	-	0.058	13.7	5.3	0.049	13.9	3.5	1.9	2	0	0	2	2	1	0	Troponin
Nsp1_C	PF05064.13	gi|529043477|ref|YP_008369696.1|	-	0.067	13.0	1.4	0.14	11.9	1.4	1.5	1	0	0	1	1	1	0	Nsp1-like	C-terminal	region
zf-FPG_IleRS	PF06827.14	gi|529043477|ref|YP_008369696.1|	-	0.07	13.0	2.8	7.3	6.6	0.1	3.2	3	0	0	3	3	3	0	Zinc	finger	found	in	FPG	and	IleRS
BID	PF06393.11	gi|529043477|ref|YP_008369696.1|	-	0.082	12.4	1.6	0.091	12.3	0.0	1.8	2	0	0	2	2	2	0	BH3	interacting	domain	(BID)
TMF_TATA_bd	PF12325.8	gi|529043477|ref|YP_008369696.1|	-	0.085	13.1	8.3	0.24	11.6	8.3	1.7	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	TATA	binding
Shugoshin_N	PF07558.11	gi|529043477|ref|YP_008369696.1|	-	0.12	12.2	1.2	0.29	11.0	1.2	1.6	1	0	0	1	1	1	0	Shugoshin	N-terminal	coiled-coil	region
Phage_GP20	PF06810.11	gi|529043477|ref|YP_008369696.1|	-	0.13	12.1	2.4	0.27	11.0	2.4	1.5	1	0	0	1	1	1	0	Phage	minor	structural	protein	GP20
SOUL	PF04832.12	gi|529043477|ref|YP_008369696.1|	-	0.14	12.3	0.1	0.27	11.4	0.1	1.4	1	0	0	1	1	1	0	SOUL	heme-binding	protein
YabA	PF06156.13	gi|529043477|ref|YP_008369696.1|	-	0.19	12.4	3.0	0.17	12.5	1.5	1.8	2	0	0	2	2	1	0	Initiation	control	protein	YabA
DDE_Tnp_IS240	PF13610.6	gi|529043477|ref|YP_008369696.1|	-	0.22	11.8	2.3	0.32	11.2	0.1	2.3	2	1	0	2	2	2	0	DDE	domain
Spc7	PF08317.11	gi|529043477|ref|YP_008369696.1|	-	0.51	9.2	6.7	0.31	9.9	2.6	2.0	2	0	0	2	2	2	0	Spc7	kinetochore	protein
TolA_bind_tri	PF16331.5	gi|529043477|ref|YP_008369696.1|	-	0.57	10.3	10.7	0.4	10.8	7.1	2.3	2	0	0	2	2	2	0	TolA	binding	protein	trimerisation
PKcGMP_CC	PF16808.5	gi|529043477|ref|YP_008369696.1|	-	0.9	9.4	14.7	0.12	12.3	4.8	2.8	1	1	1	2	2	2	0	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
Zn-ribbon_8	PF09723.10	gi|529043477|ref|YP_008369696.1|	-	1.2	9.3	5.4	19	5.5	0.2	2.7	2	0	0	2	2	2	0	Zinc	ribbon	domain
MPS2	PF17060.5	gi|529043477|ref|YP_008369696.1|	-	1.6	7.9	4.1	3.2	6.9	4.1	1.4	1	0	0	1	1	1	0	Monopolar	spindle	protein	2
APC_N_CC	PF16689.5	gi|529043477|ref|YP_008369696.1|	-	1.7	8.8	6.1	4.5	7.4	6.1	1.7	1	0	0	1	1	1	0	Coiled-coil	N-terminus	of	APC,	dimerisation	domain
DivIC	PF04977.15	gi|529043477|ref|YP_008369696.1|	-	2.3	8.0	9.8	0.29	10.9	4.5	2.2	2	0	0	2	2	2	0	Septum	formation	initiator
DUF4407	PF14362.6	gi|529043477|ref|YP_008369696.1|	-	2.5	7.4	5.1	0.54	9.6	1.0	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4407)
UPF0242	PF06785.11	gi|529043477|ref|YP_008369696.1|	-	2.8	8.0	6.5	5	7.2	6.5	1.3	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
bZIP_2	PF07716.15	gi|529043477|ref|YP_008369696.1|	-	3.2	7.9	11.9	0.74	10.0	7.5	2.4	2	1	0	2	2	1	0	Basic	region	leucine	zipper
Rubredoxin_2	PF18073.1	gi|529043477|ref|YP_008369696.1|	-	3.3	7.5	6.0	4.7	7.0	0.3	2.6	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
TSC22	PF01166.18	gi|529043477|ref|YP_008369696.1|	-	5.2	7.5	8.4	21	5.5	4.9	3.2	2	1	1	3	3	3	0	TSC-22/dip/bun	family
BPD_transp_1	PF00528.22	gi|529043478|ref|YP_008369697.1|	-	4.7e-19	68.8	15.8	5.6e-19	68.6	15.8	1.1	1	0	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.27	gi|529043480|ref|YP_008369699.1|	-	2.6e-15	57.1	0.0	5.1e-15	56.2	0.0	1.5	1	0	0	1	1	1	1	ABC	transporter
TOBE	PF03459.17	gi|529043480|ref|YP_008369699.1|	-	3.2e-09	36.9	0.2	1.2e-07	31.9	0.0	2.4	2	0	0	2	2	2	1	TOBE	domain
TOBE_2	PF08402.10	gi|529043480|ref|YP_008369699.1|	-	9.3e-08	32.1	0.1	1.1e-06	28.7	0.0	2.5	2	0	0	2	2	2	1	TOBE	domain
AAA_21	PF13304.6	gi|529043480|ref|YP_008369699.1|	-	0.0032	17.3	0.5	0.0051	16.7	0.5	1.2	1	0	0	1	1	1	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
TOBE_3	PF12857.7	gi|529043480|ref|YP_008369699.1|	-	0.012	15.5	0.0	0.037	13.9	0.0	1.8	1	0	0	1	1	1	0	TOBE-like	domain
RNase_II_C_S1	PF18614.1	gi|529043480|ref|YP_008369699.1|	-	0.05	13.5	0.9	0.3	11.0	0.0	2.6	2	0	0	2	2	2	0	RNase	II-type	exonuclease	C-terminal	S1	domain
DUF3971	PF13116.6	gi|529043480|ref|YP_008369699.1|	-	0.055	13.0	0.0	0.08	12.5	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function
S1	PF00575.23	gi|529043480|ref|YP_008369699.1|	-	0.15	12.4	0.2	1.3	9.4	0.0	2.3	3	0	0	3	3	3	0	S1	RNA	binding	domain
DUF2109	PF09882.9	gi|529043481|ref|YP_008369700.1|	-	0.017	15.1	1.5	0.019	14.9	1.5	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2109)
SPC12	PF06645.13	gi|529043481|ref|YP_008369700.1|	-	2.3	8.4	6.9	2.5	8.2	0.6	2.0	1	1	1	2	2	2	0	Microsomal	signal	peptidase	12	kDa	subunit	(SPC12)
COX1	PF00115.20	gi|529043482|ref|YP_008369701.1|	-	0.00018	20.5	10.4	0.00018	20.5	10.4	4.1	2	1	1	4	4	4	3	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
DUF2249	PF10006.9	gi|529043484|ref|YP_008369703.1|	-	1.5e-25	88.8	0.9	1.6e-25	88.7	0.9	1.0	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2249)
TusA	PF01206.17	gi|529043484|ref|YP_008369703.1|	-	0.016	15.0	0.0	0.019	14.8	0.0	1.3	1	1	0	1	1	1	0	Sulfurtransferase	TusA
MOSC_N	PF03476.16	gi|529043485|ref|YP_008369704.1|	-	1.1e-14	54.3	0.0	2.6e-14	53.1	0.0	1.6	1	0	0	1	1	1	1	MOSC	N-terminal	beta	barrel	domain
MOSC	PF03473.17	gi|529043485|ref|YP_008369704.1|	-	1.4e-05	25.1	0.0	2.2e-05	24.5	0.0	1.3	1	0	0	1	1	1	1	MOSC	domain
CMD	PF02627.20	gi|529043486|ref|YP_008369705.1|	-	4.5e-09	36.2	0.0	5.8e-09	35.9	0.0	1.1	1	0	0	1	1	1	1	Carboxymuconolactone	decarboxylase	family
DDE_Tnp_IS66	PF03050.14	gi|529043488|ref|YP_008369707.1|	-	4.8e-49	167.3	0.1	4.8e-49	167.3	0.1	1.6	2	0	0	2	2	2	1	Transposase	IS66	family
zf-IS66	PF13005.7	gi|529043488|ref|YP_008369707.1|	-	7.4e-06	26.3	2.6	2.1e-05	24.8	2.6	1.8	1	0	0	1	1	1	1	zinc-finger	binding	domain	of	transposase	IS66
GAS	PF13851.6	gi|529043488|ref|YP_008369707.1|	-	0.00063	19.2	4.5	0.0012	18.2	4.5	1.3	1	0	0	1	1	1	1	Growth-arrest	specific	micro-tubule	binding
bZIP_1	PF00170.21	gi|529043488|ref|YP_008369707.1|	-	0.0022	18.0	4.7	0.005	16.9	4.7	1.6	1	0	0	1	1	1	1	bZIP	transcription	factor
Csm1_N	PF18504.1	gi|529043488|ref|YP_008369707.1|	-	0.0048	17.2	2.4	0.013	15.8	2.4	1.7	1	0	0	1	1	1	1	Csm1	N-terminal	domain
ATG16	PF08614.11	gi|529043488|ref|YP_008369707.1|	-	0.0062	16.8	2.2	0.0062	16.8	2.2	2.4	3	0	0	3	3	2	1	Autophagy	protein	16	(ATG16)
CENP-F_leu_zip	PF10473.9	gi|529043488|ref|YP_008369707.1|	-	0.0065	16.5	7.2	0.017	15.2	7.2	1.6	1	0	0	1	1	1	1	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Tropomyosin_1	PF12718.7	gi|529043488|ref|YP_008369707.1|	-	0.0075	16.4	3.9	0.016	15.3	3.9	1.5	1	0	0	1	1	1	1	Tropomyosin	like
Angiomotin_C	PF12240.8	gi|529043488|ref|YP_008369707.1|	-	0.01	15.4	0.4	0.019	14.5	0.4	1.4	1	0	0	1	1	1	0	Angiomotin	C	terminal
MCC-bdg_PDZ	PF10506.9	gi|529043488|ref|YP_008369707.1|	-	0.03	14.3	3.2	0.077	13.0	3.2	1.7	1	0	0	1	1	1	0	PDZ	domain	of	MCC-2	bdg	protein	for	Usher	syndrome
Troponin	PF00992.20	gi|529043488|ref|YP_008369707.1|	-	0.058	13.7	5.3	0.049	13.9	3.5	1.9	2	0	0	2	2	1	0	Troponin
Nsp1_C	PF05064.13	gi|529043488|ref|YP_008369707.1|	-	0.067	13.0	1.4	0.14	11.9	1.4	1.5	1	0	0	1	1	1	0	Nsp1-like	C-terminal	region
zf-FPG_IleRS	PF06827.14	gi|529043488|ref|YP_008369707.1|	-	0.07	13.0	2.8	7.3	6.6	0.1	3.2	3	0	0	3	3	3	0	Zinc	finger	found	in	FPG	and	IleRS
BID	PF06393.11	gi|529043488|ref|YP_008369707.1|	-	0.082	12.4	1.6	0.091	12.3	0.0	1.8	2	0	0	2	2	2	0	BH3	interacting	domain	(BID)
TMF_TATA_bd	PF12325.8	gi|529043488|ref|YP_008369707.1|	-	0.085	13.1	8.3	0.24	11.6	8.3	1.7	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	TATA	binding
Shugoshin_N	PF07558.11	gi|529043488|ref|YP_008369707.1|	-	0.12	12.2	1.2	0.29	11.0	1.2	1.6	1	0	0	1	1	1	0	Shugoshin	N-terminal	coiled-coil	region
Phage_GP20	PF06810.11	gi|529043488|ref|YP_008369707.1|	-	0.13	12.1	2.4	0.27	11.0	2.4	1.5	1	0	0	1	1	1	0	Phage	minor	structural	protein	GP20
SOUL	PF04832.12	gi|529043488|ref|YP_008369707.1|	-	0.14	12.3	0.1	0.27	11.4	0.1	1.4	1	0	0	1	1	1	0	SOUL	heme-binding	protein
YabA	PF06156.13	gi|529043488|ref|YP_008369707.1|	-	0.19	12.4	3.0	0.17	12.5	1.5	1.8	2	0	0	2	2	1	0	Initiation	control	protein	YabA
DDE_Tnp_IS240	PF13610.6	gi|529043488|ref|YP_008369707.1|	-	0.22	11.8	2.3	0.32	11.2	0.1	2.3	2	1	0	2	2	2	0	DDE	domain
Spc7	PF08317.11	gi|529043488|ref|YP_008369707.1|	-	0.51	9.2	6.7	0.31	9.9	2.6	2.0	2	0	0	2	2	2	0	Spc7	kinetochore	protein
TolA_bind_tri	PF16331.5	gi|529043488|ref|YP_008369707.1|	-	0.57	10.3	10.7	0.4	10.8	7.1	2.3	2	0	0	2	2	2	0	TolA	binding	protein	trimerisation
PKcGMP_CC	PF16808.5	gi|529043488|ref|YP_008369707.1|	-	0.9	9.4	14.7	0.12	12.3	4.8	2.8	1	1	1	2	2	2	0	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
Zn-ribbon_8	PF09723.10	gi|529043488|ref|YP_008369707.1|	-	1.2	9.3	5.4	19	5.5	0.2	2.7	2	0	0	2	2	2	0	Zinc	ribbon	domain
MPS2	PF17060.5	gi|529043488|ref|YP_008369707.1|	-	1.6	7.9	4.1	3.2	6.9	4.1	1.4	1	0	0	1	1	1	0	Monopolar	spindle	protein	2
APC_N_CC	PF16689.5	gi|529043488|ref|YP_008369707.1|	-	1.7	8.8	6.1	4.5	7.4	6.1	1.7	1	0	0	1	1	1	0	Coiled-coil	N-terminus	of	APC,	dimerisation	domain
DivIC	PF04977.15	gi|529043488|ref|YP_008369707.1|	-	2.3	8.0	9.8	0.29	10.9	4.5	2.2	2	0	0	2	2	2	0	Septum	formation	initiator
DUF4407	PF14362.6	gi|529043488|ref|YP_008369707.1|	-	2.5	7.4	5.1	0.54	9.6	1.0	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4407)
UPF0242	PF06785.11	gi|529043488|ref|YP_008369707.1|	-	2.8	8.0	6.5	5	7.2	6.5	1.3	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
bZIP_2	PF07716.15	gi|529043488|ref|YP_008369707.1|	-	3.2	7.9	11.9	0.74	10.0	7.5	2.4	2	1	0	2	2	1	0	Basic	region	leucine	zipper
Rubredoxin_2	PF18073.1	gi|529043488|ref|YP_008369707.1|	-	3.3	7.5	6.0	4.7	7.0	0.3	2.6	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
TSC22	PF01166.18	gi|529043488|ref|YP_008369707.1|	-	5.2	7.5	8.4	21	5.5	4.9	3.2	2	1	1	3	3	3	0	TSC-22/dip/bun	family
HisKA_4TM	PF16926.5	gi|529043491|ref|YP_008369710.1|	-	1.2e-51	174.5	4.4	1.8e-51	174.0	4.4	1.2	1	0	0	1	1	1	1	Archaeal	4TM	region	of	histidine	kinase
HATPase_c	PF02518.26	gi|529043491|ref|YP_008369710.1|	-	4.1e-19	69.1	0.0	8.6e-19	68.1	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.6	gi|529043491|ref|YP_008369710.1|	-	6.1e-08	32.7	0.2	1.1e-07	31.8	0.2	1.5	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HATPase_c_5	PF14501.6	gi|529043491|ref|YP_008369710.1|	-	3.5e-05	23.6	0.0	7e-05	22.7	0.0	1.4	1	0	0	1	1	1	1	GHKL	domain
HisKA	PF00512.25	gi|529043491|ref|YP_008369710.1|	-	0.0062	16.5	0.2	0.013	15.5	0.2	1.6	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
HisKA_2	PF07568.12	gi|529043491|ref|YP_008369710.1|	-	0.038	14.1	0.0	0.078	13.1	0.0	1.5	1	0	0	1	1	1	0	Histidine	kinase
Acyl_transf_3	PF01757.22	gi|529043491|ref|YP_008369710.1|	-	0.055	12.5	3.0	0.074	12.1	3.0	1.1	1	0	0	1	1	1	0	Acyltransferase	family
HATPase_c_3	PF13589.6	gi|529043491|ref|YP_008369710.1|	-	0.16	11.8	0.5	0.29	11.0	0.1	1.6	2	0	0	2	2	2	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
LapA_dom	PF06305.11	gi|529043491|ref|YP_008369710.1|	-	0.53	10.1	2.7	9.3	6.2	0.0	3.0	3	0	0	3	3	3	0	Lipopolysaccharide	assembly	protein	A	domain
Lactamase_B	PF00753.27	gi|529043492|ref|YP_008369711.1|	-	4.6e-16	59.4	0.5	1.5e-13	51.2	0.1	2.6	2	0	0	2	2	2	2	Metallo-beta-lactamase	superfamily
Beta-Casp	PF10996.8	gi|529043492|ref|YP_008369711.1|	-	4.6e-14	52.6	0.0	8.3e-14	51.8	0.0	1.4	1	0	0	1	1	1	1	Beta-Casp	domain
Lactamase_B_2	PF12706.7	gi|529043492|ref|YP_008369711.1|	-	1.3e-11	44.4	2.3	2.2e-10	40.4	0.9	2.9	3	0	0	3	3	3	1	Beta-lactamase	superfamily	domain
Lactamase_B_6	PF16661.5	gi|529043492|ref|YP_008369711.1|	-	2.4e-10	40.2	0.0	4.1e-10	39.4	0.0	1.3	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily	domain
RMMBL	PF07521.12	gi|529043492|ref|YP_008369711.1|	-	1.8e-09	37.4	0.0	4.5e-09	36.1	0.0	1.7	1	0	0	1	1	1	1	Zn-dependent	metallo-hydrolase	RNA	specificity	domain
PDEase_II	PF02112.15	gi|529043492|ref|YP_008369711.1|	-	0.12	11.5	0.0	0.2	10.8	0.0	1.3	1	0	0	1	1	1	0	cAMP	phosphodiesterases	class-II
Lactamase_B_3	PF13483.6	gi|529043492|ref|YP_008369711.1|	-	0.13	12.2	0.0	0.23	11.3	0.0	1.5	1	0	0	1	1	1	0	Beta-lactamase	superfamily	domain
Y_Y_Y	PF07495.13	gi|529043494|ref|YP_008369713.1|	-	0.0041	17.0	0.0	0.0072	16.3	0.0	1.5	1	0	0	1	1	1	1	Y_Y_Y	domain
AAA_31	PF13614.6	gi|529043495|ref|YP_008369714.1|	-	3.2e-36	124.9	0.0	3.9e-36	124.6	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|529043495|ref|YP_008369714.1|	-	1.7e-17	63.7	0.0	2.1e-17	63.4	0.0	1.1	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.9	gi|529043495|ref|YP_008369714.1|	-	4.6e-07	29.5	0.5	1.9e-06	27.5	0.5	2.0	1	1	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
CBP_BcsQ	PF06564.12	gi|529043495|ref|YP_008369714.1|	-	3.7e-06	26.6	0.0	7.9e-06	25.5	0.0	1.5	1	1	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
MipZ	PF09140.11	gi|529043495|ref|YP_008369714.1|	-	5.4e-06	25.9	0.8	3.8e-05	23.1	0.8	2.1	1	1	0	1	1	1	1	ATPase	MipZ
Fer4_NifH	PF00142.18	gi|529043495|ref|YP_008369714.1|	-	8e-05	22.2	0.1	0.0094	15.4	0.0	2.1	2	0	0	2	2	2	2	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
ArsA_ATPase	PF02374.15	gi|529043495|ref|YP_008369714.1|	-	0.0039	16.4	0.1	0.0093	15.2	0.0	1.6	2	0	0	2	2	2	1	Anion-transporting	ATPase
VirC1	PF07015.11	gi|529043495|ref|YP_008369714.1|	-	0.12	11.7	0.0	0.53	9.5	0.0	1.9	2	0	0	2	2	2	0	VirC1	protein
Prefoldin	PF02996.17	gi|529043496|ref|YP_008369715.1|	-	0.095	12.6	3.1	1.6	8.6	3.1	2.2	1	1	0	1	1	1	0	Prefoldin	subunit
RRN3	PF05327.11	gi|529043496|ref|YP_008369715.1|	-	3	6.3	9.1	3.5	6.1	9.1	1.1	1	0	0	1	1	1	0	RNA	polymerase	I	specific	transcription	initiation	factor	RRN3
MazE_antitoxin	PF04014.18	gi|529043497|ref|YP_008369716.1|	-	1.2e-06	28.3	0.1	1.7e-06	27.8	0.1	1.3	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
OrfB_IS605	PF01385.19	gi|529043498|ref|YP_008369717.1|	-	1.8e-29	102.4	0.4	2.9e-29	101.7	0.4	1.3	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|529043498|ref|YP_008369717.1|	-	2.2e-19	69.1	0.2	3.9e-19	68.3	0.2	1.4	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
TF_Zn_Ribbon	PF08271.12	gi|529043498|ref|YP_008369717.1|	-	0.32	10.5	3.3	0.65	9.6	3.3	1.5	1	0	0	1	1	1	0	TFIIB	zinc-binding
PIN	PF01850.21	gi|529043499|ref|YP_008369718.1|	-	5.3e-10	39.9	0.0	6.2e-10	39.6	0.0	1.1	1	0	0	1	1	1	1	PIN	domain
GreA_GreB_N	PF03449.15	gi|529043499|ref|YP_008369718.1|	-	0.048	13.8	0.4	7.1	6.9	0.0	2.3	2	0	0	2	2	2	0	Transcription	elongation	factor,	N-terminal
YqzH	PF14164.6	gi|529043501|ref|YP_008369720.1|	-	0.11	12.6	0.0	0.11	12.6	0.0	3.0	4	0	0	4	4	4	0	YqzH-like	protein
FlaC_arch	PF05377.11	gi|529043501|ref|YP_008369720.1|	-	0.12	12.8	1.4	0.74	10.3	0.6	2.4	2	0	0	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
TSC22	PF01166.18	gi|529043501|ref|YP_008369720.1|	-	0.29	11.5	2.9	0.45	10.9	0.7	2.2	2	0	0	2	2	2	0	TSC-22/dip/bun	family
HicA_toxin	PF07927.12	gi|529043503|ref|YP_008369722.1|	-	0.021	14.8	0.0	0.024	14.7	0.0	1.1	1	0	0	1	1	1	0	HicA	toxin	of	bacterial	toxin-antitoxin,
DUF2249	PF10006.9	gi|529043505|ref|YP_008369724.1|	-	0.015	15.2	0.2	0.016	15.1	0.2	1.1	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2249)
Terminase_GpA	PF05876.12	gi|529043506|ref|YP_008369725.1|	-	0.0012	17.5	0.2	0.0012	17.5	0.2	1.0	1	0	0	1	1	1	1	Phage	terminase	large	subunit	(GpA)
Rubredoxin_2	PF18073.1	gi|529043506|ref|YP_008369725.1|	-	0.0051	16.5	1.3	0.048	13.4	0.0	2.2	2	0	0	2	2	2	1	Rubredoxin	metal	binding	domain
zf-Di19	PF05605.12	gi|529043506|ref|YP_008369725.1|	-	0.014	15.6	0.1	0.023	15.0	0.1	1.3	1	1	0	1	1	1	0	Drought	induced	19	protein	(Di19),	zinc-binding
XPA_N	PF01286.18	gi|529043506|ref|YP_008369725.1|	-	0.025	14.6	1.2	0.17	12.0	0.0	2.0	2	0	0	2	2	2	0	XPA	protein	N-terminal
FANCL_C	PF11793.8	gi|529043506|ref|YP_008369725.1|	-	0.051	13.8	1.4	2.1	8.6	0.1	2.1	1	1	1	2	2	2	0	FANCL	C-terminal	domain
zf-ribbon_3	PF13248.6	gi|529043506|ref|YP_008369725.1|	-	0.055	12.9	2.0	0.84	9.1	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-H2C2_2	PF13465.6	gi|529043506|ref|YP_008369725.1|	-	0.099	13.1	0.2	21	5.8	0.0	2.1	2	0	0	2	2	2	0	Zinc-finger	double	domain
zf-C2H2	PF00096.26	gi|529043506|ref|YP_008369725.1|	-	0.1	13.1	1.3	0.35	11.4	0.0	2.0	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
DUF4428	PF14471.6	gi|529043506|ref|YP_008369725.1|	-	0.14	12.1	0.6	1.9	8.5	0.0	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4428)
DiS_P_DiS	PF06750.13	gi|529043506|ref|YP_008369725.1|	-	0.14	12.3	0.4	0.44	10.7	0.0	1.8	1	1	1	2	2	2	0	Bacterial	Peptidase	A24	N-terminal	domain
zf_UBZ	PF18439.1	gi|529043506|ref|YP_008369725.1|	-	0.16	11.6	0.8	0.42	10.3	0.0	1.9	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
DNA_ligase_ZBD	PF03119.16	gi|529043506|ref|YP_008369725.1|	-	0.17	11.9	4.7	3.1	7.9	0.1	2.2	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
PADR1	PF08063.12	gi|529043506|ref|YP_008369725.1|	-	0.18	11.6	2.6	5.1	7.0	2.6	2.1	1	1	0	1	1	1	0	PADR1	(NUC008)	domain
Zn-ribbon_8	PF09723.10	gi|529043506|ref|YP_008369725.1|	-	0.77	9.9	4.6	1.6	8.9	0.3	2.1	1	1	1	2	2	2	0	Zinc	ribbon	domain
Phage_int_SAM_5	PF13102.6	gi|529043507|ref|YP_008369726.1|	-	1.9e-06	28.1	0.0	5.9e-06	26.5	0.0	1.8	1	1	0	1	1	1	1	Phage	integrase	SAM-like	domain
Phage_integrase	PF00589.22	gi|529043507|ref|YP_008369726.1|	-	0.0015	18.3	0.0	0.014	15.1	0.0	2.2	1	1	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_1	PF02899.17	gi|529043507|ref|YP_008369726.1|	-	0.0023	18.2	1.3	0.023	15.0	0.1	3.0	3	0	0	3	3	3	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_4	PF13495.6	gi|529043507|ref|YP_008369726.1|	-	0.035	14.6	0.0	0.081	13.4	0.0	1.6	1	0	0	1	1	1	0	Phage	integrase,	N-terminal	SAM-like	domain
DNA_pol_A	PF00476.20	gi|529043508|ref|YP_008369727.1|	-	0.046	12.8	0.0	0.051	12.6	0.0	1.1	1	0	0	1	1	1	0	DNA	polymerase	family	A
Golgin_A5	PF09787.9	gi|529043508|ref|YP_008369727.1|	-	0.061	12.8	1.3	0.066	12.7	1.3	1.0	1	0	0	1	1	1	0	Golgin	subfamily	A	member	5
DUF2721	PF11026.8	gi|529043508|ref|YP_008369727.1|	-	0.19	11.6	1.6	1	9.2	1.6	1.9	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2721)
PspB	PF06667.12	gi|529043508|ref|YP_008369727.1|	-	0.52	10.4	2.8	1.4	9.0	0.2	2.1	2	0	0	2	2	2	0	Phage	shock	protein	B
DDE_5	PF13546.6	gi|529043510|ref|YP_008369729.1|	-	6.2e-22	78.2	0.0	9.2e-22	77.7	0.0	1.2	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_Tnp_1	PF01609.21	gi|529043510|ref|YP_008369729.1|	-	5.9e-14	52.2	0.1	9.3e-14	51.6	0.1	1.4	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_2	PF04693.12	gi|529043510|ref|YP_008369729.1|	-	1.3e-05	24.6	0.2	4.5e-05	22.8	0.2	1.7	1	1	0	1	1	1	1	Archaeal	putative	transposase	ISC1217
DDE_Tnp_1_4	PF13701.6	gi|529043510|ref|YP_008369729.1|	-	0.0052	15.1	0.0	0.0071	14.7	0.0	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain	group	1
DDE_Tnp_1_6	PF13751.6	gi|529043510|ref|YP_008369729.1|	-	0.11	12.7	0.0	0.37	11.0	0.0	1.8	2	0	0	2	2	2	0	Transposase	DDE	domain
TrmB	PF01978.19	gi|529043513|ref|YP_008369732.1|	-	2.4e-09	36.9	0.0	5.2e-09	35.9	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|529043513|ref|YP_008369732.1|	-	6.3e-05	22.7	0.0	0.00019	21.1	0.0	1.8	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_20	PF12840.7	gi|529043513|ref|YP_008369732.1|	-	0.00025	21.1	0.0	0.00052	20.0	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|529043513|ref|YP_008369732.1|	-	0.00072	19.4	0.0	0.002	18.0	0.0	1.7	2	0	0	2	2	2	1	MarR	family
HTH_5	PF01022.20	gi|529043513|ref|YP_008369732.1|	-	0.0029	17.4	0.0	0.0051	16.7	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.6	gi|529043513|ref|YP_008369732.1|	-	0.0033	16.9	0.0	0.016	14.8	0.0	2.0	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|529043513|ref|YP_008369732.1|	-	0.0035	17.2	0.0	0.0057	16.6	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.6	gi|529043513|ref|YP_008369732.1|	-	0.014	15.9	0.0	0.024	15.1	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
PadR	PF03551.14	gi|529043513|ref|YP_008369732.1|	-	0.087	12.8	0.0	0.16	12.0	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
HTH_DeoR	PF08220.12	gi|529043513|ref|YP_008369732.1|	-	0.12	12.1	0.0	0.31	10.8	0.0	1.7	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
DDE_Tnp_1	PF01609.21	gi|529043514|ref|YP_008369733.1|	-	2.7e-09	37.0	0.3	4.2e-09	36.4	0.3	1.4	1	0	0	1	1	1	1	Transposase	DDE	domain
ORF6N	PF10543.9	gi|529043514|ref|YP_008369733.1|	-	0.15	12.3	0.7	0.48	10.7	0.3	1.9	2	0	0	2	2	2	0	ORF6N	domain
TauE	PF01925.19	gi|529043516|ref|YP_008369735.1|	-	0.00031	20.4	1.5	0.00033	20.4	1.5	1.1	1	0	0	1	1	1	1	Sulfite	exporter	TauE/SafE
PRiA4_ORF3	PF07929.11	gi|529043518|ref|YP_008369737.1|	-	5.8e-15	55.4	0.2	1.9e-14	53.8	0.0	1.8	2	0	0	2	2	2	1	Plasmid	pRiA4b	ORF-3-like	protein
DUF3499	PF12005.8	gi|529043518|ref|YP_008369737.1|	-	0.018	15.6	0.1	0.029	15.0	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3499)
DUF2800	PF10926.8	gi|529043519|ref|YP_008369738.1|	-	0.0022	17.3	0.1	0.0033	16.8	0.1	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2800)
DUF2383	PF09537.10	gi|529043519|ref|YP_008369738.1|	-	0.036	14.4	1.0	0.27	11.6	0.3	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF2383)
FlaC_arch	PF05377.11	gi|529043519|ref|YP_008369738.1|	-	0.11	12.9	0.3	1.1	9.8	0.1	2.4	2	0	0	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
Pox_A_type_inc	PF04508.12	gi|529043519|ref|YP_008369738.1|	-	2.6	8.0	6.8	0.87	9.5	2.7	2.5	2	0	0	2	2	2	0	Viral	A-type	inclusion	protein	repeat
DUF3368	PF11848.8	gi|529043522|ref|YP_008369741.1|	-	0.012	15.4	0.1	0.028	14.2	0.0	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3368)
DUF2330	PF10092.9	gi|529043522|ref|YP_008369741.1|	-	0.041	13.0	0.1	0.047	12.8	0.1	1.1	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2330)
UPF0175	PF03683.13	gi|529043523|ref|YP_008369742.1|	-	1e-16	60.4	1.3	1.4e-16	60.0	1.3	1.2	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0175)
DUF1847	PF08901.11	gi|529043523|ref|YP_008369742.1|	-	0.0057	16.3	0.0	0.0073	16.0	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1847)
AAA_31	PF13614.6	gi|529043525|ref|YP_008369744.1|	-	7.4e-28	97.7	0.0	1.5e-27	96.6	0.0	1.5	1	1	1	2	2	2	1	AAA	domain
CbiA	PF01656.23	gi|529043525|ref|YP_008369744.1|	-	5.5e-14	52.3	0.0	7.8e-14	51.8	0.0	1.1	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
CBP_BcsQ	PF06564.12	gi|529043525|ref|YP_008369744.1|	-	1.1e-10	41.4	0.0	1.5e-10	40.9	0.0	1.2	1	0	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
ParA	PF10609.9	gi|529043525|ref|YP_008369744.1|	-	7.1e-10	38.7	0.0	6.2e-08	32.4	0.0	2.1	2	0	0	2	2	2	1	NUBPL	iron-transfer	P-loop	NTPase
ArsA_ATPase	PF02374.15	gi|529043525|ref|YP_008369744.1|	-	6.3e-07	28.9	0.0	1.4e-06	27.7	0.0	1.6	2	0	0	2	2	2	1	Anion-transporting	ATPase
MipZ	PF09140.11	gi|529043525|ref|YP_008369744.1|	-	4.9e-06	26.0	0.3	0.0018	17.6	0.1	2.3	2	0	0	2	2	2	2	ATPase	MipZ
Fer4_NifH	PF00142.18	gi|529043525|ref|YP_008369744.1|	-	0.0011	18.4	0.0	0.0021	17.6	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
CLP1_P	PF16575.5	gi|529043525|ref|YP_008369744.1|	-	0.009	15.8	0.0	0.017	14.9	0.0	1.4	1	0	0	1	1	1	1	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
VirC1	PF07015.11	gi|529043525|ref|YP_008369744.1|	-	0.032	13.5	0.1	1.2	8.4	0.0	2.1	2	0	0	2	2	2	0	VirC1	protein
AAA_25	PF13481.6	gi|529043525|ref|YP_008369744.1|	-	0.034	13.7	0.0	0.097	12.2	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
AAA_18	PF13238.6	gi|529043525|ref|YP_008369744.1|	-	0.042	14.4	0.0	0.54	10.8	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
APS_kinase	PF01583.20	gi|529043525|ref|YP_008369744.1|	-	0.067	13.1	0.0	0.13	12.2	0.0	1.4	1	0	0	1	1	1	0	Adenylylsulphate	kinase
MeaB	PF03308.16	gi|529043525|ref|YP_008369744.1|	-	0.2	10.6	0.0	0.3	10.0	0.0	1.2	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
CSTF2_hinge	PF14327.6	gi|529043526|ref|YP_008369745.1|	-	0.18	12.3	0.0	0.28	11.7	0.0	1.2	1	0	0	1	1	1	0	Hinge	domain	of	cleavage	stimulation	factor	subunit	2
AAA_16	PF13191.6	gi|529043527|ref|YP_008369746.1|	-	2.2e-12	47.7	0.4	8.1e-12	45.9	0.1	2.1	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.29	gi|529043527|ref|YP_008369746.1|	-	1.3e-10	41.8	0.0	8.5e-10	39.2	0.0	2.4	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Cdc6_C	PF09079.11	gi|529043527|ref|YP_008369746.1|	-	1e-09	38.2	0.1	4e-09	36.3	0.0	2.1	2	0	0	2	2	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|529043527|ref|YP_008369746.1|	-	5.6e-05	23.4	0.0	0.00017	21.9	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
DUF815	PF05673.13	gi|529043527|ref|YP_008369746.1|	-	5.6e-05	22.4	0.0	0.00011	21.4	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
ATPase_2	PF01637.18	gi|529043527|ref|YP_008369746.1|	-	9.8e-05	22.4	0.0	0.00038	20.4	0.0	2.0	2	1	0	2	2	2	1	ATPase	domain	predominantly	from	Archaea
AAA_18	PF13238.6	gi|529043527|ref|YP_008369746.1|	-	0.0022	18.5	0.0	0.0089	16.6	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
TniB	PF05621.11	gi|529043527|ref|YP_008369746.1|	-	0.0034	16.8	0.0	0.03	13.7	0.0	2.2	1	1	0	1	1	1	1	Bacterial	TniB	protein
Sigma54_activat	PF00158.26	gi|529043527|ref|YP_008369746.1|	-	0.0035	17.1	0.0	0.0079	15.9	0.0	1.6	1	0	0	1	1	1	1	Sigma-54	interaction	domain
RNA_helicase	PF00910.22	gi|529043527|ref|YP_008369746.1|	-	0.0038	17.6	0.1	0.027	14.9	0.0	2.5	3	0	0	3	3	3	1	RNA	helicase
ABC_tran	PF00005.27	gi|529043527|ref|YP_008369746.1|	-	0.014	15.9	0.0	0.049	14.2	0.0	2.0	2	1	0	2	2	2	0	ABC	transporter
AAA_5	PF07728.14	gi|529043527|ref|YP_008369746.1|	-	0.014	15.3	0.1	0.11	12.5	0.1	2.3	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_32	PF13654.6	gi|529043527|ref|YP_008369746.1|	-	0.021	13.6	0.3	4.8	5.9	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
Mg_chelatase	PF01078.21	gi|529043527|ref|YP_008369746.1|	-	0.029	13.7	0.0	0.064	12.6	0.0	1.6	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
NACHT	PF05729.12	gi|529043527|ref|YP_008369746.1|	-	0.036	14.0	0.1	0.14	12.1	0.1	1.9	1	1	0	1	1	1	0	NACHT	domain
PIF1	PF05970.14	gi|529043527|ref|YP_008369746.1|	-	0.037	13.2	0.0	0.057	12.6	0.0	1.4	1	0	0	1	1	1	0	PIF1-like	helicase
NB-ARC	PF00931.22	gi|529043527|ref|YP_008369746.1|	-	0.047	12.9	0.0	0.98	8.5	0.0	2.2	2	0	0	2	2	2	0	NB-ARC	domain
IstB_IS21	PF01695.17	gi|529043527|ref|YP_008369746.1|	-	0.068	12.9	0.0	0.2	11.4	0.0	1.8	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_7	PF12775.7	gi|529043527|ref|YP_008369746.1|	-	0.07	12.6	0.0	0.17	11.4	0.0	1.6	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_assoc_2	PF16193.5	gi|529043527|ref|YP_008369746.1|	-	0.072	13.4	0.2	0.31	11.4	0.2	2.1	1	0	0	1	1	1	0	AAA	C-terminal	domain
Sigma54_activ_2	PF14532.6	gi|529043527|ref|YP_008369746.1|	-	0.1	12.7	0.0	0.21	11.7	0.0	1.5	1	0	0	1	1	1	0	Sigma-54	interaction	domain
AAA_25	PF13481.6	gi|529043527|ref|YP_008369746.1|	-	0.13	11.8	2.4	0.35	10.4	0.3	2.6	2	1	0	2	2	2	0	AAA	domain
DUF1993	PF09351.10	gi|529043528|ref|YP_008369747.1|	-	0.017	15.2	0.0	0.021	15.0	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1993)
LTD	PF00932.19	gi|529043530|ref|YP_008369749.1|	-	2.5e-25	89.0	0.9	8.7e-25	87.3	0.6	2.1	2	0	0	2	2	2	1	Lamin	Tail	Domain
Lactamase_B	PF00753.27	gi|529043530|ref|YP_008369749.1|	-	1.5e-13	51.2	1.1	3.5e-13	50.0	1.1	1.6	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|529043530|ref|YP_008369749.1|	-	0.0094	15.5	0.0	0.026	14.0	0.0	1.7	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_6	PF16661.5	gi|529043530|ref|YP_008369749.1|	-	0.076	12.4	0.0	0.13	11.7	0.0	1.3	1	0	0	1	1	1	0	Metallo-beta-lactamase	superfamily	domain
DUF3006	PF11213.8	gi|529043531|ref|YP_008369750.1|	-	6.9e-17	61.4	2.8	8e-17	61.2	2.8	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3006)
Transposase_20	PF02371.16	gi|529043532|ref|YP_008369751.1|	-	1.4e-23	83.0	0.0	8e-23	80.6	0.0	2.0	2	0	0	2	2	2	1	Transposase	IS116/IS110/IS902	family
DEDD_Tnp_IS110	PF01548.17	gi|529043532|ref|YP_008369751.1|	-	8.5e-11	42.0	0.1	1.8e-10	40.9	0.1	1.6	1	0	0	1	1	1	1	Transposase
NPV_P10	PF05531.12	gi|529043532|ref|YP_008369751.1|	-	0.0078	16.7	0.6	0.071	13.6	0.2	2.2	2	0	0	2	2	2	1	Nucleopolyhedrovirus	P10	protein
CutA1	PF03091.15	gi|529043532|ref|YP_008369751.1|	-	0.11	12.4	0.1	0.29	11.0	0.0	1.8	2	0	0	2	2	2	0	CutA1	divalent	ion	tolerance	protein
RsfS	PF02410.15	gi|529043532|ref|YP_008369751.1|	-	0.11	12.9	0.0	0.45	11.0	0.0	2.1	2	0	0	2	2	2	0	Ribosomal	silencing	factor	during	starvation
Nmad5	PF18757.1	gi|529043532|ref|YP_008369751.1|	-	0.17	12.0	1.7	1.2	9.3	0.6	2.3	2	1	0	2	2	2	0	Nucleotide	modification	associated	domain	5
4HB_MCP_1	PF12729.7	gi|529043532|ref|YP_008369751.1|	-	2.2	7.8	4.7	2	7.9	0.2	2.6	2	1	1	3	3	3	0	Four	helix	bundle	sensory	module	for	signal	transduction
DDE_Tnp_1	PF01609.21	gi|529043534|ref|YP_008369753.1|	-	1e-06	28.6	0.6	2e-06	27.6	0.6	1.5	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_7	PF13843.6	gi|529043534|ref|YP_008369753.1|	-	0.00014	21.3	0.0	0.0022	17.3	0.0	2.1	2	0	0	2	2	2	1	Transposase	IS4
DUF772	PF05598.11	gi|529043534|ref|YP_008369753.1|	-	0.00085	19.3	0.5	0.045	13.8	0.1	2.6	2	0	0	2	2	2	1	Transposase	domain	(DUF772)
TetR_C_32	PF09209.11	gi|529043534|ref|YP_008369753.1|	-	0.052	13.5	0.7	0.4	10.7	0.0	2.6	3	0	0	3	3	3	0	Tetracyclin	repressor-like,	C-terminal	domain
Glyco_hydro_46	PF01374.18	gi|529043534|ref|YP_008369753.1|	-	0.082	12.5	0.1	0.15	11.7	0.1	1.4	1	0	0	1	1	1	0	Glycosyl	hydrolase	family	46
Aldolase_II	PF00596.21	gi|529043535|ref|YP_008369754.1|	-	7.4e-45	153.2	0.0	8.5e-45	153.0	0.0	1.0	1	0	0	1	1	1	1	Class	II	Aldolase	and	Adducin	N-terminal	domain
FGGY_N	PF00370.21	gi|529043536|ref|YP_008369755.1|	-	3.3e-61	207.0	0.0	4.5e-61	206.5	0.0	1.2	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	N-terminal	domain
FGGY_C	PF02782.16	gi|529043536|ref|YP_008369755.1|	-	1.4e-32	113.1	0.0	2e-32	112.5	0.0	1.2	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	C-terminal	domain
BcrAD_BadFG	PF01869.20	gi|529043536|ref|YP_008369755.1|	-	0.0034	16.9	0.0	0.0061	16.1	0.0	1.4	1	0	0	1	1	1	1	BadF/BadG/BcrA/BcrD	ATPase	family
DUF2264	PF10022.9	gi|529043537|ref|YP_008369756.1|	-	3.6e-126	421.0	0.2	4.6e-126	420.7	0.2	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2264)
Glyco_hydro_88	PF07470.13	gi|529043538|ref|YP_008369757.1|	-	1.8e-28	99.6	1.4	2.2e-28	99.3	1.4	1.1	1	0	0	1	1	1	1	Glycosyl	Hydrolase	Family	88
Glyco_hydro_127	PF07944.12	gi|529043538|ref|YP_008369757.1|	-	0.059	11.9	0.0	0.12	10.8	0.0	1.3	1	1	0	1	1	1	0	Beta-L-arabinofuranosidase,	GH127
Aldo_ket_red	PF00248.21	gi|529043539|ref|YP_008369758.1|	-	1.4e-58	198.5	0.0	2.9e-56	190.9	0.0	2.0	1	1	0	1	1	1	1	Aldo/keto	reductase	family
DUF5021	PF16424.5	gi|529043539|ref|YP_008369758.1|	-	0.083	12.7	0.0	0.13	12.1	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5021)
GP79	PF17463.2	gi|529043539|ref|YP_008369758.1|	-	0.11	12.5	0.0	0.33	11.0	0.0	1.8	1	0	0	1	1	1	0	Gene	product	79
DUF4380	PF14315.6	gi|529043540|ref|YP_008369759.1|	-	0.051	12.5	0.0	0.28	10.1	0.0	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4380)
Glyco_hydro_42	PF02449.15	gi|529043541|ref|YP_008369760.1|	-	2.3e-148	494.5	1.9	2.8e-148	494.2	1.9	1.1	1	0	0	1	1	1	1	Beta-galactosidase
Glyco_hydro_42M	PF08532.10	gi|529043541|ref|YP_008369760.1|	-	4.6e-59	199.4	0.0	6.7e-59	198.9	0.0	1.2	1	0	0	1	1	1	1	Beta-galactosidase	trimerisation	domain
Glyco_hydro_14	PF01373.17	gi|529043541|ref|YP_008369760.1|	-	2.7e-05	23.3	0.0	0.00016	20.7	0.0	1.9	2	0	0	2	2	2	1	Glycosyl	hydrolase	family	14
Cellulase	PF00150.18	gi|529043541|ref|YP_008369760.1|	-	8e-05	22.2	0.0	0.00012	21.6	0.0	1.3	1	0	0	1	1	1	1	Cellulase	(glycosyl	hydrolase	family	5)
Glyco_hydro_42C	PF08533.10	gi|529043541|ref|YP_008369760.1|	-	0.0028	17.4	0.0	0.0071	16.1	0.0	1.7	1	0	0	1	1	1	1	Beta-galactosidase	C-terminal	domain
Glyco_hydro_35	PF01301.19	gi|529043541|ref|YP_008369760.1|	-	0.044	13.4	0.0	0.1	12.2	0.0	1.5	1	1	0	1	1	1	0	Glycosyl	hydrolases	family	35
BPD_transp_1	PF00528.22	gi|529043542|ref|YP_008369761.1|	-	6.9e-19	68.3	13.4	6.9e-19	68.3	13.4	2.0	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|529043543|ref|YP_008369762.1|	-	2.4e-36	125.2	12.0	3.5e-36	124.7	12.0	1.2	1	0	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_5	PF00496.22	gi|529043544|ref|YP_008369763.1|	-	1.9e-32	112.7	0.8	3.5e-32	111.8	0.8	1.3	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
Glyco_hydro_127	PF07944.12	gi|529043546|ref|YP_008369765.1|	-	7.8e-162	539.4	0.0	1e-161	539.0	0.0	1.1	1	0	0	1	1	1	1	Beta-L-arabinofuranosidase,	GH127
SDA1	PF05285.12	gi|529043546|ref|YP_008369765.1|	-	4.7	6.5	7.5	6.5	6.1	7.5	1.1	1	0	0	1	1	1	0	SDA1
BNR_2	PF13088.6	gi|529043547|ref|YP_008369766.1|	-	1.4e-12	47.5	0.0	3.7e-09	36.3	0.0	2.3	1	1	1	2	2	2	2	BNR	repeat-like	domain
BNR	PF02012.20	gi|529043547|ref|YP_008369766.1|	-	0.00012	21.5	17.3	0.071	13.1	0.7	4.8	5	0	0	5	5	5	3	BNR/Asp-box	repeat
F5_F8_type_C	PF00754.25	gi|529043547|ref|YP_008369766.1|	-	0.00021	21.4	0.1	7.7	6.7	0.0	4.0	3	1	1	4	4	4	2	F5/8	type	C	domain
Sortilin-Vps10	PF15902.5	gi|529043547|ref|YP_008369766.1|	-	0.0003	19.7	0.6	0.3	9.8	0.1	2.8	3	0	0	3	3	3	2	Sortilin,	neurotensin	receptor	3,
PSII_BNR	PF14870.6	gi|529043547|ref|YP_008369766.1|	-	0.032	13.5	0.3	2.8	7.1	0.0	2.9	3	0	0	3	3	3	0	Photosynthesis	system	II	assembly	factor	YCF48
BNR_6	PF15899.5	gi|529043547|ref|YP_008369766.1|	-	0.058	13.5	1.1	2.4	8.4	0.0	3.3	3	0	0	3	3	3	0	BNR-Asp	box	repeat
CyRPA	PF18638.1	gi|529043547|ref|YP_008369766.1|	-	0.075	12.2	0.1	4.8	6.2	0.0	2.3	3	0	0	3	3	3	0	Cysteine-Rich	Protective	Antigen	6	bladed	domain
ClpB_D2-small	PF10431.9	gi|529043548|ref|YP_008369767.1|	-	0.3	11.2	0.2	0.38	10.8	0.2	1.1	1	0	0	1	1	1	0	C-terminal,	D2-small	domain,	of	ClpB	protein
Alpha-L-AF_C	PF06964.12	gi|529043549|ref|YP_008369768.1|	-	2.6e-07	30.9	0.0	4.7e-07	30.1	0.0	1.5	1	0	0	1	1	1	1	Alpha-L-arabinofuranosidase	C-terminal	domain
Alpha-L-AF_C	PF06964.12	gi|529043550|ref|YP_008369769.1|	-	1.1e-32	113.5	1.5	1.6e-32	112.9	1.5	1.3	1	0	0	1	1	1	1	Alpha-L-arabinofuranosidase	C-terminal	domain
Glyco_hydro_79C	PF16862.5	gi|529043550|ref|YP_008369769.1|	-	0.0077	17.1	0.8	0.085	13.8	0.7	2.5	3	0	0	3	3	3	1	Glycosyl	hydrolase	family	79	C-terminal	beta	domain
Alpha-L-AF_C	PF06964.12	gi|529043551|ref|YP_008369770.1|	-	1.1e-29	103.7	2.0	1.7e-29	103.1	2.0	1.2	1	0	0	1	1	1	1	Alpha-L-arabinofuranosidase	C-terminal	domain
Dockerin_1	PF00404.18	gi|529043552|ref|YP_008369771.1|	-	0.0031	17.7	4.4	0.008	16.4	4.4	1.7	1	0	0	1	1	1	1	Dockerin	type	I	domain
EF-hand_6	PF13405.6	gi|529043552|ref|YP_008369771.1|	-	0.026	14.4	0.5	0.026	14.4	0.5	3.4	3	1	0	3	3	3	0	EF-hand	domain
EF-hand_1	PF00036.32	gi|529043552|ref|YP_008369771.1|	-	0.064	12.8	8.5	1.1	8.9	0.5	4.2	3	1	1	4	4	4	0	EF	hand
Glyco_hydro_30C	PF17189.4	gi|529043552|ref|YP_008369771.1|	-	0.087	13.1	0.3	0.4	10.9	0.1	2.3	2	0	0	2	2	2	0	Glycosyl	hydrolase	family	30	beta	sandwich	domain
EF-hand_9	PF14658.6	gi|529043552|ref|YP_008369771.1|	-	0.19	12.1	0.4	7	7.1	0.1	3.2	2	1	1	3	3	3	0	EF-hand	domain
TAT_signal	PF10518.9	gi|529043552|ref|YP_008369771.1|	-	1.8	8.5	5.5	5	7.1	5.5	1.8	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
EF-hand_7	PF13499.6	gi|529043552|ref|YP_008369771.1|	-	5.5	7.5	6.4	3.9	8.0	0.4	3.1	3	1	0	3	3	3	0	EF-hand	domain	pair
HTH_32	PF13565.6	gi|529043553|ref|YP_008369772.1|	-	3.1e-14	53.4	0.3	9.8e-14	51.7	0.1	2.0	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_29	PF13551.6	gi|529043553|ref|YP_008369772.1|	-	3.4e-12	46.2	0.0	2.2e-11	43.6	0.0	2.1	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_33	PF13592.6	gi|529043553|ref|YP_008369772.1|	-	7.1e-11	41.6	0.3	2.7e-09	36.5	0.0	2.5	3	0	0	3	3	3	1	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|529043553|ref|YP_008369772.1|	-	2.4e-06	27.1	0.2	1.3e-05	24.9	0.0	2.2	3	0	0	3	3	3	1	Homeodomain-like	domain
HTH_28	PF13518.6	gi|529043553|ref|YP_008369772.1|	-	7.7e-06	25.9	0.0	7.6e-05	22.8	0.0	2.3	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|529043553|ref|YP_008369772.1|	-	4e-05	23.5	0.0	0.0001	22.1	0.0	1.7	2	0	0	2	2	2	1	HTH	domain
HTH_Tnp_4	PF13613.6	gi|529043553|ref|YP_008369772.1|	-	0.00014	21.5	0.0	0.00042	20.0	0.0	1.7	2	0	0	2	2	2	1	Helix-turn-helix	of	DDE	superfamily	endonuclease
HTH_7	PF02796.15	gi|529043553|ref|YP_008369772.1|	-	0.00045	20.2	0.0	0.03	14.4	0.0	2.3	2	0	0	2	2	2	1	Helix-turn-helix	domain	of	resolvase
HTH_38	PF13936.6	gi|529043553|ref|YP_008369772.1|	-	0.003	17.3	0.0	0.027	14.2	0.0	2.1	2	0	0	2	2	2	1	Helix-turn-helix	domain
MarR	PF01047.22	gi|529043553|ref|YP_008369772.1|	-	0.0036	17.2	0.0	0.0057	16.6	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HBS1_N	PF08938.10	gi|529043553|ref|YP_008369772.1|	-	0.013	15.8	1.1	0.026	14.8	0.3	2.0	2	1	0	2	2	2	0	HBS1	N-terminus
HTH_psq	PF05225.16	gi|529043553|ref|YP_008369772.1|	-	0.016	15.0	0.0	0.027	14.2	0.0	1.4	1	0	0	1	1	1	0	helix-turn-helix,	Psq	domain
GntR	PF00392.21	gi|529043553|ref|YP_008369772.1|	-	0.016	14.8	0.0	0.092	12.4	0.0	2.0	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
HTH_36	PF13730.6	gi|529043553|ref|YP_008369772.1|	-	0.019	14.9	0.0	0.031	14.2	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_Tnp_ISL3	PF13542.6	gi|529043553|ref|YP_008369772.1|	-	0.022	14.1	0.4	0.039	13.4	0.0	1.7	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_17	PF12728.7	gi|529043553|ref|YP_008369772.1|	-	0.16	12.2	0.4	0.9	9.8	0.0	2.2	2	0	0	2	2	2	0	Helix-turn-helix	domain
Arabinose_Isome	PF02610.15	gi|529043554|ref|YP_008369773.1|	-	7.5e-174	578.0	0.0	9.7e-174	577.7	0.0	1.1	1	0	0	1	1	1	1	L-arabinose	isomerase
Arabinose_Iso_C	PF11762.8	gi|529043554|ref|YP_008369773.1|	-	7.5e-50	167.5	0.1	2.4e-49	165.9	0.0	1.9	2	0	0	2	2	2	1	L-arabinose	isomerase	C-terminal	domain
Sipho_Gp37	PF14594.6	gi|529043554|ref|YP_008369773.1|	-	0.14	11.2	0.1	0.2	10.6	0.1	1.2	1	0	0	1	1	1	0	Siphovirus	ReqiPepy6	Gp37-like	protein
DUF2909	PF11137.8	gi|529043555|ref|YP_008369774.1|	-	0.1	12.6	5.1	0.12	12.3	5.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2909)
DUF5326	PF17260.2	gi|529043555|ref|YP_008369774.1|	-	8.9	6.5	8.6	16	5.7	3.0	2.0	1	1	1	2	2	2	0	Family	of	unknown	function	(DUF5326)
Alpha-L-AF_C	PF06964.12	gi|529043556|ref|YP_008369775.1|	-	3.6e-34	118.3	1.6	4.8e-34	117.9	1.6	1.2	1	0	0	1	1	1	1	Alpha-L-arabinofuranosidase	C-terminal	domain
VBS	PF08913.10	gi|529043557|ref|YP_008369776.1|	-	0.012	16.1	0.0	0.021	15.2	0.0	1.4	1	0	0	1	1	1	0	Vinculin	Binding	Site
DUF89	PF01937.19	gi|529043557|ref|YP_008369776.1|	-	0.051	12.5	0.0	0.061	12.3	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF89
Con-6	PF10346.9	gi|529043557|ref|YP_008369776.1|	-	0.09	12.8	0.0	0.17	12.0	0.0	1.4	1	0	0	1	1	1	0	Conidiation	protein	6
Spc7	PF08317.11	gi|529043558|ref|YP_008369777.1|	-	3.6e-07	29.4	70.8	0.0017	17.3	22.6	4.2	2	2	2	4	4	4	4	Spc7	kinetochore	protein
DUF5082	PF16888.5	gi|529043558|ref|YP_008369777.1|	-	0.00012	22.4	52.6	0.012	15.9	13.1	5.8	2	2	3	5	5	5	3	Domain	of	unknown	function	(DUF5082)
Atg14	PF10186.9	gi|529043558|ref|YP_008369777.1|	-	0.00012	21.3	47.0	0.12	11.5	13.1	4.0	2	2	2	4	4	4	3	Vacuolar	sorting	38	and	autophagy-related	subunit	14
AAA_15	PF13175.6	gi|529043558|ref|YP_008369777.1|	-	0.00018	21.4	9.5	0.002	17.9	9.4	2.7	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_23	PF13476.6	gi|529043558|ref|YP_008369777.1|	-	0.00038	21.0	66.0	2.1e+02	2.3	46.0	4.6	1	1	1	2	2	2	0	AAA	domain
DUF1664	PF07889.12	gi|529043558|ref|YP_008369777.1|	-	0.0014	18.7	41.1	0.55	10.3	6.3	5.6	3	2	1	5	5	5	3	Protein	of	unknown	function	(DUF1664)
Baculo_PEP_C	PF04513.12	gi|529043558|ref|YP_008369777.1|	-	0.0022	18.0	26.1	0.64	10.0	3.1	5.1	3	2	3	6	6	5	2	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DHR10	PF18595.1	gi|529043558|ref|YP_008369777.1|	-	0.003	17.6	77.1	0.13	12.3	11.3	4.7	2	2	1	4	4	4	3	Designed	helical	repeat	protein	10	domain
Lectin_N	PF03954.14	gi|529043558|ref|YP_008369777.1|	-	0.0048	16.6	17.5	0.042	13.6	0.1	4.6	3	2	1	4	4	4	2	Hepatic	lectin,	N-terminal	domain
DUF4407	PF14362.6	gi|529043558|ref|YP_008369777.1|	-	0.0054	16.1	51.3	0.07	12.5	5.3	3.7	1	1	2	3	3	3	3	Domain	of	unknown	function	(DUF4407)
Myosin_tail_1	PF01576.19	gi|529043558|ref|YP_008369777.1|	-	0.008	14.1	72.4	0.027	12.3	28.9	2.9	2	1	1	3	3	3	2	Myosin	tail
ADIP	PF11559.8	gi|529043558|ref|YP_008369777.1|	-	0.0089	16.1	12.2	0.0089	16.1	12.2	5.7	2	2	4	6	6	6	3	Afadin-	and	alpha	-actinin-Binding
Uso1_p115_C	PF04871.13	gi|529043558|ref|YP_008369777.1|	-	0.021	15.2	5.0	0.021	15.2	5.0	4.8	2	2	2	4	4	4	0	Uso1	/	p115	like	vesicle	tethering	protein,	C	terminal	region
Fez1	PF06818.15	gi|529043558|ref|YP_008369777.1|	-	0.022	15.2	60.1	0.9	10.0	16.5	4.1	1	1	3	4	4	4	0	Fez1
NPV_P10	PF05531.12	gi|529043558|ref|YP_008369777.1|	-	0.029	14.8	32.2	1	9.8	1.2	6.8	2	2	4	6	6	6	0	Nucleopolyhedrovirus	P10	protein
DivIC	PF04977.15	gi|529043558|ref|YP_008369777.1|	-	0.03	14.1	0.8	0.03	14.1	0.8	9.0	2	2	6	8	8	8	0	Septum	formation	initiator
DUF4201	PF13870.6	gi|529043558|ref|YP_008369777.1|	-	0.033	13.9	51.8	0.13	11.9	2.3	4.6	2	2	2	4	4	4	0	Domain	of	unknown	function	(DUF4201)
Seryl_tRNA_N	PF02403.22	gi|529043558|ref|YP_008369777.1|	-	0.052	13.8	60.8	0.082	13.1	10.3	5.8	2	2	3	5	5	5	0	Seryl-tRNA	synthetase	N-terminal	domain
DUF3584	PF12128.8	gi|529043558|ref|YP_008369777.1|	-	0.086	10.3	60.9	0.34	8.4	27.4	2.4	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3584)
AAA_13	PF13166.6	gi|529043558|ref|YP_008369777.1|	-	0.087	11.5	45.8	0.079	11.6	18.7	2.5	1	1	0	2	2	2	0	AAA	domain
HemX	PF04375.14	gi|529043558|ref|YP_008369777.1|	-	0.097	11.9	40.2	2	7.6	9.1	4.2	2	2	2	4	4	4	0	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
FlaC_arch	PF05377.11	gi|529043558|ref|YP_008369777.1|	-	0.1	13.0	0.5	0.1	13.0	0.5	8.6	5	2	4	9	9	8	0	Flagella	accessory	protein	C	(FlaC)
LPP	PF04728.13	gi|529043558|ref|YP_008369777.1|	-	0.17	12.3	27.0	0.73	10.3	0.1	7.5	4	3	4	8	8	7	0	Lipoprotein	leucine-zipper
HMMR_N	PF15905.5	gi|529043558|ref|YP_008369777.1|	-	0.2	11.1	64.4	0.23	10.9	9.5	4.0	2	2	2	4	4	4	0	Hyaluronan	mediated	motility	receptor	N-terminal
DUF4200	PF13863.6	gi|529043558|ref|YP_008369777.1|	-	0.23	11.9	69.0	2.2	8.7	0.2	7.0	2	2	4	7	7	7	0	Domain	of	unknown	function	(DUF4200)
TPR_MLP1_2	PF07926.12	gi|529043558|ref|YP_008369777.1|	-	0.48	10.5	72.6	0.095	12.8	20.9	5.3	2	2	2	4	4	4	0	TPR/MLP1/MLP2-like	protein
CENP-F_leu_zip	PF10473.9	gi|529043558|ref|YP_008369777.1|	-	0.58	10.2	78.1	0.19	11.8	17.4	5.9	2	2	3	5	5	4	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Tropomyosin_1	PF12718.7	gi|529043558|ref|YP_008369777.1|	-	0.62	10.2	81.6	0.78	9.9	15.5	4.8	1	1	2	4	4	4	0	Tropomyosin	like
IFT57	PF10498.9	gi|529043558|ref|YP_008369777.1|	-	1.1	8.2	40.9	0.014	14.4	10.9	2.9	2	1	0	2	2	2	0	Intra-flagellar	transport	protein	57
FliJ	PF02050.16	gi|529043558|ref|YP_008369777.1|	-	2.8	8.2	48.8	1.6	9.0	12.0	5.1	2	2	2	4	4	4	0	Flagellar	FliJ	protein
KASH_CCD	PF14662.6	gi|529043558|ref|YP_008369777.1|	-	3.2	7.5	67.4	3.2	7.5	17.8	4.1	2	2	2	4	4	4	0	Coiled-coil	region	of	CCDC155	or	KASH
MAD	PF05557.13	gi|529043558|ref|YP_008369777.1|	-	3.4	5.9	62.9	2.8	6.2	25.9	2.4	2	0	0	2	2	2	0	Mitotic	checkpoint	protein
GAS	PF13851.6	gi|529043558|ref|YP_008369777.1|	-	3.4	6.9	59.9	8.2	5.7	7.6	4.7	2	2	2	4	4	4	0	Growth-arrest	specific	micro-tubule	binding
WXG100	PF06013.12	gi|529043558|ref|YP_008369777.1|	-	5.2	7.4	29.1	17	5.7	0.2	7.1	4	1	0	6	6	6	0	Proteins	of	100	residues	with	WXG
Tektin	PF03148.14	gi|529043558|ref|YP_008369777.1|	-	6.5	5.4	65.3	0.43	9.3	1.3	5.7	1	1	3	4	4	4	0	Tektin	family
GIT_CC	PF16559.5	gi|529043558|ref|YP_008369777.1|	-	7.8	6.4	20.4	0.29	11.0	0.4	5.5	5	1	2	7	7	7	0	GIT	coiled-coil	Rho	guanine	nucleotide	exchange	factor
APG6_N	PF17675.1	gi|529043558|ref|YP_008369777.1|	-	8.5	6.9	94.3	18	5.9	17.2	5.9	1	1	3	5	5	5	0	Apg6	coiled-coil	region
YscO	PF07321.12	gi|529043558|ref|YP_008369777.1|	-	8.6	6.3	73.2	0.052	13.5	2.7	5.0	3	1	0	4	4	4	0	Type	III	secretion	protein	YscO
FPP	PF05911.11	gi|529043558|ref|YP_008369777.1|	-	9.7	4.2	56.5	2.7	6.1	25.2	2.6	1	1	0	2	2	2	0	Filament-like	plant	protein,	long	coiled-coil
GFRP	PF06399.13	gi|529043559|ref|YP_008369778.1|	-	0.025	14.5	0.0	0.025	14.5	0.0	1.0	1	0	0	1	1	1	0	GTP	cyclohydrolase	I	feedback	regulatory	protein	(GFRP)
AAA_31	PF13614.6	gi|529043560|ref|YP_008369779.1|	-	1.6e-21	77.0	0.0	2.4e-21	76.5	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|529043560|ref|YP_008369779.1|	-	5.3e-15	55.6	0.0	7.8e-15	55.1	0.0	1.2	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.9	gi|529043560|ref|YP_008369779.1|	-	1.6e-08	34.3	0.1	1.2e-07	31.4	0.1	1.9	1	1	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
MipZ	PF09140.11	gi|529043560|ref|YP_008369779.1|	-	7.7e-07	28.7	0.2	0.00023	20.5	0.1	2.3	1	1	1	2	2	2	2	ATPase	MipZ
CBP_BcsQ	PF06564.12	gi|529043560|ref|YP_008369779.1|	-	5.6e-06	26.0	0.0	1.1e-05	25.1	0.0	1.4	1	0	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
CLP1_P	PF16575.5	gi|529043560|ref|YP_008369779.1|	-	0.0027	17.5	0.0	0.0048	16.7	0.0	1.3	1	0	0	1	1	1	1	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
ArsA_ATPase	PF02374.15	gi|529043560|ref|YP_008369779.1|	-	0.0034	16.6	0.0	0.0092	15.2	0.0	1.7	2	0	0	2	2	2	1	Anion-transporting	ATPase
ATP_bind_1	PF03029.17	gi|529043560|ref|YP_008369779.1|	-	0.011	15.6	0.0	0.02	14.7	0.0	1.3	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
AAA_24	PF13479.6	gi|529043560|ref|YP_008369779.1|	-	0.014	15.1	0.0	0.032	13.9	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
SRP54	PF00448.22	gi|529043560|ref|YP_008369779.1|	-	0.023	14.4	0.0	0.048	13.3	0.0	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
Fer4_NifH	PF00142.18	gi|529043560|ref|YP_008369779.1|	-	0.024	14.1	0.0	0.038	13.4	0.0	1.4	1	0	0	1	1	1	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
AAA_18	PF13238.6	gi|529043560|ref|YP_008369779.1|	-	0.075	13.6	0.1	0.21	12.1	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
AAA_14	PF13173.6	gi|529043560|ref|YP_008369779.1|	-	0.14	12.2	0.0	0.33	11.0	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_25	PF13481.6	gi|529043560|ref|YP_008369779.1|	-	0.27	10.8	1.7	0.44	10.1	0.4	2.1	2	1	0	2	2	2	0	AAA	domain
PDDEXK_1	PF12705.7	gi|529043561|ref|YP_008369780.1|	-	1.7e-12	47.8	0.3	4.3e-12	46.5	0.1	1.9	2	0	0	2	2	2	1	PD-(D/E)XK	nuclease	superfamily
UvrD-helicase	PF00580.21	gi|529043562|ref|YP_008369781.1|	-	2.3e-50	171.9	0.1	1.1e-49	169.7	0.1	2.0	1	1	0	1	1	1	1	UvrD/REP	helicase	N-terminal	domain
UvrD_C	PF13361.6	gi|529043562|ref|YP_008369781.1|	-	9.7e-33	114.0	0.0	8.1e-19	68.2	0.0	2.4	1	1	1	2	2	2	2	UvrD-like	helicase	C-terminal	domain
AAA_19	PF13245.6	gi|529043562|ref|YP_008369781.1|	-	1.1e-24	87.4	0.0	1.5e-23	83.7	0.0	2.6	2	1	0	2	2	1	1	AAA	domain
UvrD_C_2	PF13538.6	gi|529043562|ref|YP_008369781.1|	-	4.1e-10	39.3	0.2	0.00013	21.7	0.1	2.7	2	0	0	2	2	2	2	UvrD-like	helicase	C-terminal	domain
PDDEXK_1	PF12705.7	gi|529043562|ref|YP_008369781.1|	-	1.5e-08	34.8	2.3	8.2e-08	32.5	0.2	2.5	2	1	1	3	3	3	1	PD-(D/E)XK	nuclease	superfamily
AAA_30	PF13604.6	gi|529043562|ref|YP_008369781.1|	-	2.4e-06	27.4	0.0	1.3e-05	25.0	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_12	PF13087.6	gi|529043562|ref|YP_008369781.1|	-	0.00074	19.2	0.0	0.029	14.0	0.0	2.6	2	1	0	2	2	2	1	AAA	domain
Viral_helicase1	PF01443.18	gi|529043562|ref|YP_008369781.1|	-	0.0025	17.6	0.3	8.7	6.0	0.0	3.6	3	1	0	3	3	3	1	Viral	(Superfamily	1)	RNA	helicase
NTPase_I-T	PF01931.18	gi|529043562|ref|YP_008369781.1|	-	0.008	16.0	0.0	0.11	12.3	0.0	2.2	2	0	0	2	2	2	1	Protein	of	unknown	function	DUF84
AAA_11	PF13086.6	gi|529043562|ref|YP_008369781.1|	-	0.017	14.9	0.0	0.56	9.9	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_22	PF13401.6	gi|529043562|ref|YP_008369781.1|	-	0.1	12.9	0.0	0.62	10.3	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
DUF3090	PF11290.8	gi|529043563|ref|YP_008369782.1|	-	0.05	13.4	0.0	0.25	11.1	0.0	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3090)
DUF1045	PF06299.12	gi|529043563|ref|YP_008369782.1|	-	0.078	12.9	0.1	0.24	11.3	0.0	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1045)
DDE_Tnp_1	PF01609.21	gi|529043564|ref|YP_008369783.1|	-	1.1e-08	35.0	0.1	2.2e-08	34.0	0.0	1.5	2	0	0	2	2	2	1	Transposase	DDE	domain
DDE_Tnp_1_6	PF13751.6	gi|529043564|ref|YP_008369783.1|	-	0.021	15.1	0.0	0.065	13.5	0.0	1.7	2	0	0	2	2	2	0	Transposase	DDE	domain
DDE_5	PF13546.6	gi|529043567|ref|YP_008369786.1|	-	6.8e-23	81.4	0.1	1e-22	80.8	0.1	1.4	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DNA_gyraseA_C	PF03989.13	gi|529043568|ref|YP_008369787.1|	-	2.2e-55	183.9	1.8	2.2e-12	46.2	0.0	6.2	6	1	0	6	6	6	5	DNA	gyrase	C-terminal	domain,	beta-propeller
Cas_Csn2	PF09711.10	gi|529043568|ref|YP_008369787.1|	-	0.021	14.5	0.1	0.034	13.8	0.1	1.2	1	0	0	1	1	1	0	CRISPR-associated	protein	(Cas_Csn2)
YfdX	PF10938.8	gi|529043569|ref|YP_008369788.1|	-	0.0091	15.9	3.4	0.0091	15.9	3.4	1.9	2	0	0	2	2	2	1	YfdX	protein
PvlArgDC	PF01862.16	gi|529043569|ref|YP_008369788.1|	-	0.063	13.1	2.2	4.8	7.0	0.0	4.0	5	0	0	5	5	5	0	Pyruvoyl-dependent	arginine	decarboxylase	(PvlArgDC)
HNH_repeat	PF18780.1	gi|529043569|ref|YP_008369788.1|	-	0.12	12.2	0.0	0.12	12.2	0.0	3.5	4	0	0	4	4	4	0	Homing	endonuclease	repeat
ResIII	PF04851.15	gi|529043570|ref|YP_008369789.1|	-	3.4e-21	76.0	0.0	6e-21	75.2	0.0	1.4	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.31	gi|529043570|ref|YP_008369789.1|	-	4.5e-13	49.5	0.1	1.2e-12	48.2	0.1	1.7	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.29	gi|529043570|ref|YP_008369789.1|	-	6.8e-11	42.3	0.0	1.4e-10	41.2	0.0	1.6	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
SWI2_SNF2	PF18766.1	gi|529043570|ref|YP_008369789.1|	-	3e-09	36.9	0.0	7.8e-09	35.5	0.0	1.6	1	1	0	1	1	1	1	SWI2/SNF2	ATPase
SNF2_N	PF00176.23	gi|529043570|ref|YP_008369789.1|	-	1.6e-07	30.4	0.0	2.7e-07	29.6	0.0	1.2	1	0	0	1	1	1	1	SNF2	family	N-terminal	domain
ERCC3_RAD25_C	PF16203.5	gi|529043570|ref|YP_008369789.1|	-	0.0029	16.9	0.0	0.0054	16.0	0.0	1.4	1	0	0	1	1	1	1	ERCC3/RAD25/XPB	C-terminal	helicase
AAA_25	PF13481.6	gi|529043570|ref|YP_008369789.1|	-	0.033	13.8	0.0	0.075	12.6	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
DDE_Tnp_IS66	PF03050.14	gi|529043571|ref|YP_008369790.1|	-	4.8e-49	167.3	0.1	4.8e-49	167.3	0.1	1.6	2	0	0	2	2	2	1	Transposase	IS66	family
zf-IS66	PF13005.7	gi|529043571|ref|YP_008369790.1|	-	7.4e-06	26.3	2.6	2.1e-05	24.8	2.6	1.8	1	0	0	1	1	1	1	zinc-finger	binding	domain	of	transposase	IS66
GAS	PF13851.6	gi|529043571|ref|YP_008369790.1|	-	0.00063	19.2	4.5	0.0012	18.2	4.5	1.3	1	0	0	1	1	1	1	Growth-arrest	specific	micro-tubule	binding
bZIP_1	PF00170.21	gi|529043571|ref|YP_008369790.1|	-	0.0022	18.0	4.7	0.005	16.9	4.7	1.6	1	0	0	1	1	1	1	bZIP	transcription	factor
Csm1_N	PF18504.1	gi|529043571|ref|YP_008369790.1|	-	0.0048	17.2	2.4	0.013	15.8	2.4	1.7	1	0	0	1	1	1	1	Csm1	N-terminal	domain
ATG16	PF08614.11	gi|529043571|ref|YP_008369790.1|	-	0.0062	16.8	2.2	0.0062	16.8	2.2	2.4	3	0	0	3	3	2	1	Autophagy	protein	16	(ATG16)
CENP-F_leu_zip	PF10473.9	gi|529043571|ref|YP_008369790.1|	-	0.0065	16.5	7.2	0.017	15.2	7.2	1.6	1	0	0	1	1	1	1	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Tropomyosin_1	PF12718.7	gi|529043571|ref|YP_008369790.1|	-	0.0075	16.4	3.9	0.016	15.3	3.9	1.5	1	0	0	1	1	1	1	Tropomyosin	like
Angiomotin_C	PF12240.8	gi|529043571|ref|YP_008369790.1|	-	0.01	15.4	0.4	0.019	14.5	0.4	1.4	1	0	0	1	1	1	0	Angiomotin	C	terminal
MCC-bdg_PDZ	PF10506.9	gi|529043571|ref|YP_008369790.1|	-	0.03	14.3	3.2	0.077	13.0	3.2	1.7	1	0	0	1	1	1	0	PDZ	domain	of	MCC-2	bdg	protein	for	Usher	syndrome
Troponin	PF00992.20	gi|529043571|ref|YP_008369790.1|	-	0.058	13.7	5.3	0.049	13.9	3.5	1.9	2	0	0	2	2	1	0	Troponin
Nsp1_C	PF05064.13	gi|529043571|ref|YP_008369790.1|	-	0.067	13.0	1.4	0.14	11.9	1.4	1.5	1	0	0	1	1	1	0	Nsp1-like	C-terminal	region
zf-FPG_IleRS	PF06827.14	gi|529043571|ref|YP_008369790.1|	-	0.07	13.0	2.8	7.3	6.6	0.1	3.2	3	0	0	3	3	3	0	Zinc	finger	found	in	FPG	and	IleRS
BID	PF06393.11	gi|529043571|ref|YP_008369790.1|	-	0.082	12.4	1.6	0.091	12.3	0.0	1.8	2	0	0	2	2	2	0	BH3	interacting	domain	(BID)
TMF_TATA_bd	PF12325.8	gi|529043571|ref|YP_008369790.1|	-	0.085	13.1	8.3	0.24	11.6	8.3	1.7	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	TATA	binding
Shugoshin_N	PF07558.11	gi|529043571|ref|YP_008369790.1|	-	0.12	12.2	1.2	0.29	11.0	1.2	1.6	1	0	0	1	1	1	0	Shugoshin	N-terminal	coiled-coil	region
Phage_GP20	PF06810.11	gi|529043571|ref|YP_008369790.1|	-	0.13	12.1	2.4	0.27	11.0	2.4	1.5	1	0	0	1	1	1	0	Phage	minor	structural	protein	GP20
SOUL	PF04832.12	gi|529043571|ref|YP_008369790.1|	-	0.14	12.3	0.1	0.27	11.4	0.1	1.4	1	0	0	1	1	1	0	SOUL	heme-binding	protein
YabA	PF06156.13	gi|529043571|ref|YP_008369790.1|	-	0.19	12.4	3.0	0.17	12.5	1.5	1.8	2	0	0	2	2	1	0	Initiation	control	protein	YabA
DDE_Tnp_IS240	PF13610.6	gi|529043571|ref|YP_008369790.1|	-	0.22	11.8	2.3	0.32	11.2	0.1	2.3	2	1	0	2	2	2	0	DDE	domain
Spc7	PF08317.11	gi|529043571|ref|YP_008369790.1|	-	0.51	9.2	6.7	0.31	9.9	2.6	2.0	2	0	0	2	2	2	0	Spc7	kinetochore	protein
TolA_bind_tri	PF16331.5	gi|529043571|ref|YP_008369790.1|	-	0.57	10.3	10.7	0.4	10.8	7.1	2.3	2	0	0	2	2	2	0	TolA	binding	protein	trimerisation
PKcGMP_CC	PF16808.5	gi|529043571|ref|YP_008369790.1|	-	0.9	9.4	14.7	0.12	12.3	4.8	2.8	1	1	1	2	2	2	0	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
Zn-ribbon_8	PF09723.10	gi|529043571|ref|YP_008369790.1|	-	1.2	9.3	5.4	19	5.5	0.2	2.7	2	0	0	2	2	2	0	Zinc	ribbon	domain
MPS2	PF17060.5	gi|529043571|ref|YP_008369790.1|	-	1.6	7.9	4.1	3.2	6.9	4.1	1.4	1	0	0	1	1	1	0	Monopolar	spindle	protein	2
APC_N_CC	PF16689.5	gi|529043571|ref|YP_008369790.1|	-	1.7	8.8	6.1	4.5	7.4	6.1	1.7	1	0	0	1	1	1	0	Coiled-coil	N-terminus	of	APC,	dimerisation	domain
DivIC	PF04977.15	gi|529043571|ref|YP_008369790.1|	-	2.3	8.0	9.8	0.29	10.9	4.5	2.2	2	0	0	2	2	2	0	Septum	formation	initiator
DUF4407	PF14362.6	gi|529043571|ref|YP_008369790.1|	-	2.5	7.4	5.1	0.54	9.6	1.0	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4407)
UPF0242	PF06785.11	gi|529043571|ref|YP_008369790.1|	-	2.8	8.0	6.5	5	7.2	6.5	1.3	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
bZIP_2	PF07716.15	gi|529043571|ref|YP_008369790.1|	-	3.2	7.9	11.9	0.74	10.0	7.5	2.4	2	1	0	2	2	1	0	Basic	region	leucine	zipper
Rubredoxin_2	PF18073.1	gi|529043571|ref|YP_008369790.1|	-	3.3	7.5	6.0	4.7	7.0	0.3	2.6	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
TSC22	PF01166.18	gi|529043571|ref|YP_008369790.1|	-	5.2	7.5	8.4	21	5.5	4.9	3.2	2	1	1	3	3	3	0	TSC-22/dip/bun	family
AAA_23	PF13476.6	gi|529043572|ref|YP_008369791.1|	-	7.4e-26	91.9	8.9	7.4e-26	91.9	8.9	4.2	2	2	1	3	3	2	1	AAA	domain
AAA_15	PF13175.6	gi|529043572|ref|YP_008369791.1|	-	3.2e-13	50.1	14.4	3.2e-13	50.1	14.4	3.3	2	2	0	2	2	1	1	AAA	ATPase	domain
AAA_27	PF13514.6	gi|529043572|ref|YP_008369791.1|	-	5.9e-08	32.6	0.0	5.9e-08	32.6	0.0	3.7	3	1	0	3	3	3	1	AAA	domain
SMC_N	PF02463.19	gi|529043572|ref|YP_008369791.1|	-	1.8e-07	30.8	0.0	1.8e-07	30.8	0.0	3.0	2	1	0	2	2	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_13	PF13166.6	gi|529043572|ref|YP_008369791.1|	-	4.7e-07	28.9	25.8	0.00018	20.3	9.7	3.2	3	0	0	3	3	3	2	AAA	domain
T3SSipB	PF16535.5	gi|529043572|ref|YP_008369791.1|	-	1.3e-06	29.0	37.6	0.00053	20.5	4.5	3.3	2	1	1	3	3	3	2	Type	III	cell	invasion	protein	SipB
AAA_29	PF13555.6	gi|529043572|ref|YP_008369791.1|	-	6.8e-06	25.7	0.0	1.4e-05	24.7	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
ABC_tran	PF00005.27	gi|529043572|ref|YP_008369791.1|	-	0.0003	21.3	0.0	0.0003	21.3	0.0	3.8	3	1	0	3	3	2	1	ABC	transporter
Spc7	PF08317.11	gi|529043572|ref|YP_008369791.1|	-	0.0004	19.4	51.6	0.0035	16.3	25.1	2.2	2	0	0	2	2	2	2	Spc7	kinetochore	protein
DUF4201	PF13870.6	gi|529043572|ref|YP_008369791.1|	-	0.00042	20.1	18.6	0.00042	20.1	18.6	3.5	2	2	1	3	3	3	1	Domain	of	unknown	function	(DUF4201)
MukB	PF04310.12	gi|529043572|ref|YP_008369791.1|	-	0.00065	19.6	0.0	0.00065	19.6	0.0	2.6	3	0	0	3	3	3	1	MukB	N-terminal
AAA_21	PF13304.6	gi|529043572|ref|YP_008369791.1|	-	0.0061	16.4	7.4	0.018	14.8	0.0	3.0	3	2	0	3	3	3	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
RsgA_GTPase	PF03193.16	gi|529043572|ref|YP_008369791.1|	-	0.016	15.1	0.0	0.016	15.1	0.0	2.6	3	0	0	3	3	3	0	RsgA	GTPase
Ploopntkinase3	PF18751.1	gi|529043572|ref|YP_008369791.1|	-	0.051	13.5	0.1	0.16	11.9	0.0	1.8	2	0	0	2	2	1	0	P-loop	Nucleotide	Kinase3
AAA_22	PF13401.6	gi|529043572|ref|YP_008369791.1|	-	0.077	13.3	0.7	0.33	11.2	0.0	2.5	2	1	0	2	2	2	0	AAA	domain
Prominin	PF05478.11	gi|529043572|ref|YP_008369791.1|	-	0.19	9.6	20.0	0.079	10.9	6.5	2.3	2	0	0	2	2	2	0	Prominin
MMR_HSR1	PF01926.23	gi|529043572|ref|YP_008369791.1|	-	0.2	11.8	4.4	0.21	11.7	0.3	3.0	2	1	0	2	2	2	0	50S	ribosome-binding	GTPase
Golgin_A5	PF09787.9	gi|529043572|ref|YP_008369791.1|	-	0.24	10.8	59.6	0.86	9.0	24.5	3.3	2	1	1	3	3	3	0	Golgin	subfamily	A	member	5
HAUS6_N	PF14661.6	gi|529043572|ref|YP_008369791.1|	-	0.28	10.7	38.3	0.028	14.0	3.1	3.4	2	1	1	3	3	3	0	HAUS	augmin-like	complex	subunit	6	N-terminus
DUF812	PF05667.11	gi|529043572|ref|YP_008369791.1|	-	0.54	9.1	45.0	0.53	9.1	8.5	3.0	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF812)
FtsK_SpoIIIE	PF01580.18	gi|529043572|ref|YP_008369791.1|	-	0.63	9.3	3.6	0.67	9.3	0.0	2.7	3	0	0	3	3	3	0	FtsK/SpoIIIE	family
Tropomyosin_1	PF12718.7	gi|529043572|ref|YP_008369791.1|	-	0.74	10.0	65.7	1.7	8.8	3.2	4.0	2	2	2	4	4	4	0	Tropomyosin	like
ApoC-I	PF04691.12	gi|529043572|ref|YP_008369791.1|	-	0.8	9.7	14.3	0.15	12.0	0.4	4.4	4	0	0	4	4	3	0	Apolipoprotein	C-I	(ApoC-1)
TMPIT	PF07851.13	gi|529043572|ref|YP_008369791.1|	-	0.9	8.7	38.8	0.18	11.0	9.5	3.1	2	1	1	3	3	3	0	TMPIT-like	protein
DUF4407	PF14362.6	gi|529043572|ref|YP_008369791.1|	-	0.99	8.7	36.0	1.1	8.5	18.7	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4407)
GAS	PF13851.6	gi|529043572|ref|YP_008369791.1|	-	2.1	7.7	50.8	0.074	12.4	14.4	3.1	2	1	0	2	2	2	0	Growth-arrest	specific	micro-tubule	binding
CENP-Q	PF13094.6	gi|529043572|ref|YP_008369791.1|	-	2.7	8.2	35.6	0.7	10.1	19.6	2.7	2	0	0	2	2	2	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
CALCOCO1	PF07888.11	gi|529043572|ref|YP_008369791.1|	-	5.3	5.8	51.5	0.59	8.9	26.9	2.2	2	0	0	2	2	2	0	Calcium	binding	and	coiled-coil	domain	(CALCOCO1)	like
FapA	PF03961.13	gi|529043572|ref|YP_008369791.1|	-	6.3	5.3	39.7	2.3	6.7	12.0	3.1	2	1	1	3	3	3	0	Flagellar	Assembly	Protein	A
DUF2894	PF11445.8	gi|529043572|ref|YP_008369791.1|	-	8.6	6.8	15.9	14	6.1	9.2	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2894)
DUF3578	PF12102.8	gi|529043574|ref|YP_008369793.1|	-	8.5e-33	113.5	0.0	1.5e-32	112.7	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3578)
AAA_5	PF07728.14	gi|529043574|ref|YP_008369793.1|	-	2.2e-12	47.2	0.0	4.5e-12	46.2	0.0	1.6	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA_16	PF13191.6	gi|529043574|ref|YP_008369793.1|	-	7.8e-06	26.4	0.1	2.6e-05	24.7	0.1	2.0	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|529043574|ref|YP_008369793.1|	-	6.5e-05	23.2	0.1	0.00048	20.4	0.0	2.6	3	1	0	3	3	2	1	AAA	domain
AAA_30	PF13604.6	gi|529043574|ref|YP_008369793.1|	-	7e-05	22.6	0.0	0.00025	20.8	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
AAA_19	PF13245.6	gi|529043574|ref|YP_008369793.1|	-	0.00015	22.1	0.0	0.00098	19.5	0.0	2.1	1	1	0	1	1	1	1	AAA	domain
Mg_chelatase	PF01078.21	gi|529043574|ref|YP_008369793.1|	-	0.00041	19.8	0.0	0.0007	19.0	0.0	1.3	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
AAA	PF00004.29	gi|529043574|ref|YP_008369793.1|	-	0.0008	19.8	0.0	0.0017	18.7	0.0	1.6	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_3	PF07726.11	gi|529043574|ref|YP_008369793.1|	-	0.0016	18.3	0.0	0.82	9.5	0.0	3.3	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
IstB_IS21	PF01695.17	gi|529043574|ref|YP_008369793.1|	-	0.0021	17.8	0.0	0.012	15.3	0.0	2.0	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
AAA_7	PF12775.7	gi|529043574|ref|YP_008369793.1|	-	0.003	17.1	0.0	0.0056	16.2	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	dynein	motor	region
RNA_helicase	PF00910.22	gi|529043574|ref|YP_008369793.1|	-	0.0037	17.6	0.0	0.032	14.6	0.0	2.2	2	0	0	2	2	2	1	RNA	helicase
ABC_tran	PF00005.27	gi|529043574|ref|YP_008369793.1|	-	0.0059	17.1	0.0	0.015	15.8	0.0	1.8	1	1	0	1	1	1	1	ABC	transporter
AAA_28	PF13521.6	gi|529043574|ref|YP_008369793.1|	-	0.034	14.4	0.2	0.48	10.6	0.1	2.5	2	0	0	2	2	2	0	AAA	domain
AAA_33	PF13671.6	gi|529043574|ref|YP_008369793.1|	-	0.04	14.1	0.0	0.096	12.8	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
Sigma54_activat	PF00158.26	gi|529043574|ref|YP_008369793.1|	-	0.041	13.6	0.0	0.1	12.3	0.0	1.6	1	0	0	1	1	1	0	Sigma-54	interaction	domain
AAA_11	PF13086.6	gi|529043574|ref|YP_008369793.1|	-	0.093	12.5	0.0	0.16	11.7	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|529043574|ref|YP_008369793.1|	-	0.12	12.2	0.0	0.23	11.4	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
T2SSE	PF00437.20	gi|529043574|ref|YP_008369793.1|	-	0.14	11.2	0.0	0.23	10.5	0.0	1.2	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
RuvB_N	PF05496.12	gi|529043574|ref|YP_008369793.1|	-	0.16	11.7	0.0	0.4	10.4	0.0	1.6	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_18	PF13238.6	gi|529043574|ref|YP_008369793.1|	-	0.18	12.4	0.0	0.47	11.0	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|529043574|ref|YP_008369793.1|	-	0.18	11.7	0.0	0.33	10.8	0.0	1.3	1	0	0	1	1	1	0	RsgA	GTPase
NTPase_1	PF03266.15	gi|529043574|ref|YP_008369793.1|	-	0.22	11.4	0.0	0.43	10.5	0.0	1.4	1	0	0	1	1	1	0	NTPase
McrBC	PF10117.9	gi|529043575|ref|YP_008369794.1|	-	0.00013	21.2	0.6	0.0066	15.6	0.8	2.3	2	1	0	2	2	2	2	McrBC	5-methylcytosine	restriction	system	component
DUF2357	PF09823.9	gi|529043575|ref|YP_008369794.1|	-	0.006	15.9	0.3	0.012	14.9	0.3	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF2357)
DDE_Tnp_IS66	PF03050.14	gi|529043576|ref|YP_008369795.1|	-	1.3e-49	169.2	0.2	1.3e-49	169.2	0.2	1.5	2	0	0	2	2	2	1	Transposase	IS66	family
zf-IS66	PF13005.7	gi|529043576|ref|YP_008369795.1|	-	2.6e-06	27.7	5.5	2.6e-06	27.7	5.5	2.2	2	0	0	2	2	2	1	zinc-finger	binding	domain	of	transposase	IS66
PKcGMP_CC	PF16808.5	gi|529043576|ref|YP_008369795.1|	-	0.00053	19.8	11.2	0.0015	18.3	11.2	1.8	1	0	0	1	1	1	1	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
CCDC-167	PF15188.6	gi|529043576|ref|YP_008369795.1|	-	0.0073	16.6	0.8	0.022	15.1	0.8	1.7	1	0	0	1	1	1	1	Coiled-coil	domain-containing	protein	167
ERM	PF00769.19	gi|529043576|ref|YP_008369795.1|	-	0.01	15.7	4.8	0.022	14.6	4.1	1.9	2	0	0	2	2	2	0	Ezrin/radixin/moesin	family
SPATA24	PF15175.6	gi|529043576|ref|YP_008369795.1|	-	0.013	15.4	0.5	0.026	14.4	0.5	1.4	1	0	0	1	1	1	0	Spermatogenesis-associated	protein	24
DZR	PF12773.7	gi|529043576|ref|YP_008369795.1|	-	0.052	13.6	2.6	0.12	12.4	2.6	1.6	1	0	0	1	1	1	0	Double	zinc	ribbon
SlyX	PF04102.12	gi|529043576|ref|YP_008369795.1|	-	0.054	14.1	2.0	0.19	12.4	2.0	2.0	1	0	0	1	1	1	0	SlyX
Med4	PF10018.9	gi|529043576|ref|YP_008369795.1|	-	0.074	12.7	0.7	0.15	11.8	0.7	1.5	1	0	0	1	1	1	0	Vitamin-D-receptor	interacting	Mediator	subunit	4
HSBP1	PF06825.12	gi|529043576|ref|YP_008369795.1|	-	0.092	12.6	5.3	0.15	12.0	1.5	2.3	1	1	1	2	2	2	0	Heat	shock	factor	binding	protein	1
FTA4	PF13093.6	gi|529043576|ref|YP_008369795.1|	-	0.13	12.1	2.9	0.5	10.2	0.2	2.4	2	1	0	2	2	2	0	Kinetochore	complex	Fta4	of	Sim4	subunit,	or	CENP-50
DivIC	PF04977.15	gi|529043576|ref|YP_008369795.1|	-	0.15	11.8	5.0	0.11	12.2	2.2	2.2	2	0	0	2	2	2	0	Septum	formation	initiator
DDE_Tnp_IS240	PF13610.6	gi|529043576|ref|YP_008369795.1|	-	0.17	12.1	1.2	0.28	11.4	0.0	2.0	2	1	0	2	2	2	0	DDE	domain
zf-FPG_IleRS	PF06827.14	gi|529043576|ref|YP_008369795.1|	-	0.24	11.3	5.1	6	6.8	0.3	3.2	3	0	0	3	3	3	0	Zinc	finger	found	in	FPG	and	IleRS
Prefoldin_2	PF01920.20	gi|529043576|ref|YP_008369795.1|	-	0.28	11.2	6.0	0.71	9.9	6.0	1.6	1	0	0	1	1	1	0	Prefoldin	subunit
UPF0449	PF15136.6	gi|529043576|ref|YP_008369795.1|	-	0.28	11.7	5.9	2.5	8.6	2.2	2.7	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0449
HOOK	PF05622.12	gi|529043576|ref|YP_008369795.1|	-	0.55	8.3	3.7	0.85	7.7	3.7	1.2	1	0	0	1	1	1	0	HOOK	protein
Zn-ribbon_8	PF09723.10	gi|529043576|ref|YP_008369795.1|	-	0.85	9.8	5.5	14	5.9	0.8	2.6	2	0	0	2	2	2	0	Zinc	ribbon	domain
YhfH	PF14149.6	gi|529043576|ref|YP_008369795.1|	-	1.6	8.8	4.9	1.3	9.1	1.0	2.3	2	0	0	2	2	2	0	YhfH-like	protein
ABC_tran_CTD	PF16326.5	gi|529043576|ref|YP_008369795.1|	-	4	7.8	11.7	0.24	11.7	5.3	2.4	3	0	0	3	3	2	0	ABC	transporter	C-terminal	domain
MethyltransfD12	PF02086.15	gi|529043577|ref|YP_008369796.1|	-	7.5e-52	176.6	0.7	9.5e-52	176.2	0.7	1.1	1	0	0	1	1	1	1	D12	class	N6	adenine-specific	DNA	methyltransferase
YlbE	PF14003.6	gi|529043577|ref|YP_008369796.1|	-	0.12	12.8	0.4	0.27	11.7	0.4	1.5	1	0	0	1	1	1	0	YlbE-like	protein
HATPase_c_3	PF13589.6	gi|529043578|ref|YP_008369797.1|	-	2.5e-16	59.8	0.0	5.5e-16	58.6	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c	PF02518.26	gi|529043578|ref|YP_008369797.1|	-	3.5e-07	30.7	0.0	8.7e-07	29.4	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
DDE_Tnp_1	PF01609.21	gi|529043582|ref|YP_008369801.1|	-	6.3e-29	101.2	0.0	8.2e-29	100.8	0.0	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_2	PF04693.12	gi|529043582|ref|YP_008369801.1|	-	0.01	15.1	0.0	0.014	14.6	0.0	1.1	1	0	0	1	1	1	0	Archaeal	putative	transposase	ISC1217
Rop-like	PF05082.13	gi|529043582|ref|YP_008369801.1|	-	0.07	13.0	0.7	2.9	7.8	0.0	2.7	3	0	0	3	3	3	0	Rop-like
DDE_Tnp_1_4	PF13701.6	gi|529043582|ref|YP_008369801.1|	-	0.12	10.6	0.0	0.26	9.5	0.0	1.5	1	1	1	2	2	2	0	Transposase	DDE	domain	group	1
DDE_Tnp_1	PF01609.21	gi|529043583|ref|YP_008369802.1|	-	7.6e-13	48.6	1.3	1.5e-12	47.6	1.3	1.4	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_2	PF13586.6	gi|529043583|ref|YP_008369802.1|	-	0.012	16.0	1.2	0.033	14.6	0.1	2.1	2	1	0	2	2	2	0	Transposase	DDE	domain
AAA_15	PF13175.6	gi|529043584|ref|YP_008369803.1|	-	6.5e-23	82.0	0.7	1.9e-14	54.2	0.0	3.1	3	0	0	3	3	3	2	AAA	ATPase	domain
AAA_21	PF13304.6	gi|529043584|ref|YP_008369803.1|	-	3.1e-17	63.3	5.5	6.4e-12	45.9	1.1	3.0	3	0	0	3	3	3	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|529043584|ref|YP_008369803.1|	-	2.8e-06	26.9	0.0	0.00015	21.3	0.0	2.3	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|529043584|ref|YP_008369803.1|	-	0.00017	22.2	0.1	0.0071	16.9	0.0	2.6	2	0	0	2	2	2	1	AAA	domain
AAA_29	PF13555.6	gi|529043584|ref|YP_008369803.1|	-	0.00076	19.2	0.0	0.0016	18.2	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_27	PF13514.6	gi|529043584|ref|YP_008369803.1|	-	0.013	15.1	0.0	0.025	14.2	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
DUF2813	PF11398.8	gi|529043584|ref|YP_008369803.1|	-	0.14	11.3	0.0	4.5	6.4	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2813)
NYD-SP28	PF14772.6	gi|529043584|ref|YP_008369803.1|	-	1	9.4	4.9	7.5	6.7	3.4	2.4	2	0	0	2	2	2	0	Sperm	tail
DUF4404	PF14357.6	gi|529043584|ref|YP_008369803.1|	-	2.4	8.9	4.7	26	5.5	1.6	3.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4404)
AIPR	PF10592.9	gi|529043585|ref|YP_008369804.1|	-	4.4e-20	72.5	0.4	6.8e-20	71.9	0.4	1.3	1	0	0	1	1	1	1	AIPR	protein
HTH_23	PF13384.6	gi|529043589|ref|YP_008369808.1|	-	0.017	14.9	0.0	0.029	14.2	0.0	1.3	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_38	PF13936.6	gi|529043589|ref|YP_008369808.1|	-	0.045	13.5	0.0	0.07	12.9	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
RepB	PF07506.11	gi|529043589|ref|YP_008369808.1|	-	0.12	12.5	0.0	0.13	12.3	0.0	1.1	1	0	0	1	1	1	0	RepB	plasmid	partitioning	protein
Methyltransf_11	PF08241.12	gi|529043591|ref|YP_008369810.1|	-	5.6e-22	78.2	0.0	8.3e-22	77.7	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|529043591|ref|YP_008369810.1|	-	7.7e-22	77.7	0.0	9.7e-22	77.4	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|529043591|ref|YP_008369810.1|	-	3.3e-21	75.8	0.0	5.2e-21	75.2	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|529043591|ref|YP_008369810.1|	-	1.9e-16	60.1	0.0	2.4e-16	59.8	0.0	1.2	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_23	PF13489.6	gi|529043591|ref|YP_008369810.1|	-	1.3e-15	57.7	0.0	1.7e-15	57.3	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|529043591|ref|YP_008369810.1|	-	4.8e-11	43.3	0.0	7.2e-11	42.7	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|529043591|ref|YP_008369810.1|	-	7.2e-08	32.2	0.0	1.1e-07	31.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_32	PF13679.6	gi|529043591|ref|YP_008369810.1|	-	7.5e-06	26.0	0.0	1.2e-05	25.3	0.0	1.3	1	1	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.19	gi|529043591|ref|YP_008369810.1|	-	0.00014	21.7	0.0	0.00023	21.0	0.0	1.3	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_2	PF00891.18	gi|529043591|ref|YP_008369810.1|	-	0.0002	20.7	0.0	0.00025	20.4	0.0	1.2	1	0	0	1	1	1	1	O-methyltransferase	domain
TPMT	PF05724.11	gi|529043591|ref|YP_008369810.1|	-	0.00056	19.6	0.0	0.00086	19.0	0.0	1.4	1	0	0	1	1	1	1	Thiopurine	S-methyltransferase	(TPMT)
PrmA	PF06325.13	gi|529043591|ref|YP_008369810.1|	-	0.00091	18.7	0.0	0.0011	18.5	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
DREV	PF05219.12	gi|529043591|ref|YP_008369810.1|	-	0.001	18.2	0.0	0.0013	17.8	0.0	1.1	1	0	0	1	1	1	1	DREV	methyltransferase
MetW	PF07021.12	gi|529043591|ref|YP_008369810.1|	-	0.0024	17.5	0.0	0.0034	17.0	0.0	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
CMAS	PF02353.20	gi|529043591|ref|YP_008369810.1|	-	0.0029	16.9	0.0	0.004	16.5	0.0	1.3	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_18	PF12847.7	gi|529043591|ref|YP_008369810.1|	-	0.0059	16.5	0.0	0.0091	15.9	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
TehB	PF03848.14	gi|529043591|ref|YP_008369810.1|	-	0.0072	15.8	0.0	0.0096	15.3	0.0	1.2	1	0	0	1	1	1	1	Tellurite	resistance	protein	TehB
UPF0020	PF01170.18	gi|529043591|ref|YP_008369810.1|	-	0.016	14.9	0.1	0.048	13.3	0.0	1.7	1	1	1	2	2	2	0	Putative	RNA	methylase	family	UPF0020
GidB	PF02527.15	gi|529043591|ref|YP_008369810.1|	-	0.018	14.3	0.0	0.062	12.6	0.0	1.8	1	1	0	1	1	1	0	rRNA	small	subunit	methyltransferase	G
NodS	PF05401.11	gi|529043591|ref|YP_008369810.1|	-	0.034	13.8	0.0	0.042	13.5	0.0	1.2	1	0	0	1	1	1	0	Nodulation	protein	S	(NodS)
Methyltransf_9	PF08003.11	gi|529043591|ref|YP_008369810.1|	-	0.055	12.4	0.0	0.07	12.0	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1698)
AdoMet_MTase	PF07757.13	gi|529043591|ref|YP_008369810.1|	-	0.098	13.0	0.0	0.16	12.3	0.0	1.4	1	0	0	1	1	1	0	Predicted	AdoMet-dependent	methyltransferase
RrnaAD	PF00398.20	gi|529043591|ref|YP_008369810.1|	-	0.12	11.5	0.0	0.14	11.2	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
Methyltransf_4	PF02390.17	gi|529043591|ref|YP_008369810.1|	-	0.12	11.8	0.0	0.25	10.8	0.0	1.5	1	1	1	2	2	2	0	Putative	methyltransferase
SRAP	PF02586.14	gi|529043592|ref|YP_008369811.1|	-	6.2e-58	195.9	0.0	7e-58	195.8	0.0	1.0	1	0	0	1	1	1	1	SOS	response	associated	peptidase	(SRAP)
Erythro_esteras	PF05139.14	gi|529043593|ref|YP_008369812.1|	-	0.035	13.9	0.0	0.035	13.9	0.0	1.0	1	0	0	1	1	1	0	Erythromycin	esterase
Cofac_haem_bdg	PF04187.13	gi|529043593|ref|YP_008369812.1|	-	0.18	11.8	0.0	0.2	11.6	0.0	1.0	1	0	0	1	1	1	0	Haem-binding	uptake,	Tiki	superfamily,	ChaN
NERD	PF08378.11	gi|529043595|ref|YP_008369814.1|	-	0.026	15.0	0.0	0.058	13.9	0.0	1.5	1	0	0	1	1	1	0	Nuclease-related	domain
DUF1272	PF06906.11	gi|529043595|ref|YP_008369814.1|	-	0.07	13.2	0.6	0.13	12.3	0.6	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1272)
DDE_Tnp_1	PF01609.21	gi|529043597|ref|YP_008369816.1|	-	0.0078	15.9	0.0	0.035	13.7	0.0	2.0	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF1863	PF08937.11	gi|529043598|ref|YP_008369817.1|	-	3.2e-15	56.6	0.0	4.7e-14	52.8	0.0	2.0	2	0	0	2	2	2	1	MTH538	TIR-like	domain	(DUF1863)
DDE_Tnp_1	PF01609.21	gi|529043600|ref|YP_008369819.1|	-	9.6e-08	31.9	0.3	2e-07	30.9	0.3	1.5	1	1	0	1	1	1	1	Transposase	DDE	domain
TFR_dimer	PF04253.15	gi|529043601|ref|YP_008369820.1|	-	0.04	14.0	0.5	0.095	12.8	0.5	1.6	1	0	0	1	1	1	0	Transferrin	receptor-like	dimerisation	domain
AbiJ_NTD5	PF18865.1	gi|529043601|ref|YP_008369820.1|	-	0.053	13.3	0.1	0.13	12.1	0.1	1.7	1	0	0	1	1	1	0	AbiJ	N-terminal	domain	5
DUF327	PF03885.13	gi|529043601|ref|YP_008369820.1|	-	0.2	11.6	2.4	0.7	9.8	0.4	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF327)
Rad51	PF08423.11	gi|529043602|ref|YP_008369821.1|	-	0.049	12.9	0.0	0.2	10.9	0.0	1.8	1	1	0	1	1	1	0	Rad51
Laminin_I	PF06008.14	gi|529043603|ref|YP_008369822.1|	-	0.012	15.3	3.4	0.015	15.0	3.4	1.2	1	0	0	1	1	1	0	Laminin	Domain	I
CorA	PF01544.18	gi|529043603|ref|YP_008369822.1|	-	0.015	14.7	1.7	0.017	14.5	1.7	1.0	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
XhlA	PF10779.9	gi|529043603|ref|YP_008369822.1|	-	0.12	12.6	1.5	0.22	11.8	1.5	1.4	1	0	0	1	1	1	0	Haemolysin	XhlA
HXXSHH	PF07586.11	gi|529043603|ref|YP_008369822.1|	-	0.42	10.1	4.3	1.4	8.4	1.1	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1552)
Sugarporin_N	PF11471.8	gi|529043603|ref|YP_008369822.1|	-	0.43	10.6	7.3	0.22	11.5	4.3	2.1	2	1	0	2	2	2	0	Maltoporin	periplasmic	N-terminal	extension
PSK_trans_fac	PF07704.11	gi|529043603|ref|YP_008369822.1|	-	3.8	8.3	9.1	3.1e+02	2.2	9.1	2.1	1	1	0	1	1	1	0	Rv0623-like	transcription	factor
DNA_pol_B	PF00136.21	gi|529043605|ref|YP_008369824.1|	-	2.7e-27	95.6	0.0	5e-27	94.7	0.0	1.3	1	1	0	1	1	1	1	DNA	polymerase	family	B
Glycos_transf_N	PF04413.16	gi|529043605|ref|YP_008369824.1|	-	0.014	15.0	0.0	0.026	14.2	0.0	1.3	1	0	0	1	1	1	0	3-Deoxy-D-manno-octulosonic-acid	transferase	(kdotransferase)
Cdc6_C	PF09079.11	gi|529043606|ref|YP_008369825.1|	-	1.5e-15	56.9	0.0	3.2e-15	55.9	0.0	1.6	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|529043606|ref|YP_008369825.1|	-	2.4e-12	47.3	0.0	5.2e-12	46.2	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|529043606|ref|YP_008369825.1|	-	1.6e-08	35.1	1.8	8.4e-08	32.8	0.6	2.5	2	1	0	2	2	2	1	AAA	ATPase	domain
ATPase_2	PF01637.18	gi|529043606|ref|YP_008369825.1|	-	6.7e-05	22.9	0.0	0.00017	21.6	0.0	1.6	1	1	1	2	2	2	1	ATPase	domain	predominantly	from	Archaea
AAA_5	PF07728.14	gi|529043606|ref|YP_008369825.1|	-	0.00024	21.1	0.0	0.00099	19.1	0.0	2.2	2	1	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
Sigma54_activat	PF00158.26	gi|529043606|ref|YP_008369825.1|	-	0.00028	20.6	0.0	0.00051	19.8	0.0	1.4	1	0	0	1	1	1	1	Sigma-54	interaction	domain
DUF815	PF05673.13	gi|529043606|ref|YP_008369825.1|	-	0.00088	18.5	0.0	0.0014	17.8	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
AAA_30	PF13604.6	gi|529043606|ref|YP_008369825.1|	-	0.002	17.9	0.0	0.004	16.9	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
RNA_helicase	PF00910.22	gi|529043606|ref|YP_008369825.1|	-	0.0022	18.4	0.0	0.045	14.1	0.0	2.6	1	1	0	1	1	1	1	RNA	helicase
TniB	PF05621.11	gi|529043606|ref|YP_008369825.1|	-	0.0088	15.5	0.0	0.016	14.7	0.0	1.4	1	0	0	1	1	1	1	Bacterial	TniB	protein
DUF2791	PF10923.8	gi|529043606|ref|YP_008369825.1|	-	0.02	13.7	0.1	0.41	9.4	0.0	2.1	2	0	0	2	2	2	0	P-loop	Domain	of	unknown	function	(DUF2791)
NB-ARC	PF00931.22	gi|529043606|ref|YP_008369825.1|	-	0.021	14.0	0.0	0.035	13.3	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
Adeno_IVa2	PF02456.15	gi|529043606|ref|YP_008369825.1|	-	0.022	13.5	0.0	0.032	13.0	0.0	1.2	1	0	0	1	1	1	0	Adenovirus	IVa2	protein
AAA_19	PF13245.6	gi|529043606|ref|YP_008369825.1|	-	0.026	14.8	0.0	0.085	13.2	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_7	PF12775.7	gi|529043606|ref|YP_008369825.1|	-	0.032	13.8	0.0	0.059	12.9	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA	PF00004.29	gi|529043606|ref|YP_008369825.1|	-	0.048	14.1	0.7	0.24	11.8	0.1	2.5	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_32	PF13654.6	gi|529043606|ref|YP_008369825.1|	-	0.049	12.4	0.5	1.6	7.4	0.2	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_14	PF13173.6	gi|529043606|ref|YP_008369825.1|	-	0.072	13.1	0.1	0.39	10.8	0.1	2.0	1	1	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|529043606|ref|YP_008369825.1|	-	0.12	12.3	0.0	0.23	11.4	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
PIF1	PF05970.14	gi|529043606|ref|YP_008369825.1|	-	0.12	11.5	0.0	0.23	10.6	0.0	1.4	1	0	0	1	1	1	0	PIF1-like	helicase
ABC_tran	PF00005.27	gi|529043606|ref|YP_008369825.1|	-	0.13	12.8	0.0	5.2	7.6	0.0	2.9	2	1	0	2	2	2	0	ABC	transporter
Torsin	PF06309.11	gi|529043606|ref|YP_008369825.1|	-	0.14	12.2	0.0	0.47	10.6	0.0	1.8	2	0	0	2	2	2	0	Torsin
Mg_chelatase_C	PF13335.6	gi|529043606|ref|YP_008369825.1|	-	0.27	11.9	3.6	0.62	10.7	0.9	2.4	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI	C-terminal
MarR_2	PF12802.7	gi|529043608|ref|YP_008369827.1|	-	9.7e-17	60.6	3.0	6.5e-10	38.8	1.1	2.7	2	0	0	2	2	2	2	MarR	family
TrmB	PF01978.19	gi|529043608|ref|YP_008369827.1|	-	1.4e-10	40.9	0.2	0.0002	21.1	0.0	2.5	2	0	0	2	2	2	2	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|529043608|ref|YP_008369827.1|	-	9.2e-09	34.7	0.1	0.0053	16.3	0.0	2.5	2	0	0	2	2	2	2	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|529043608|ref|YP_008369827.1|	-	3e-08	33.5	0.0	0.0015	18.4	0.1	2.5	2	0	0	2	2	2	2	MarR	family
HTH_IclR	PF09339.10	gi|529043608|ref|YP_008369827.1|	-	4.4e-08	32.8	0.1	0.0021	17.8	0.0	2.8	3	0	0	3	3	2	2	IclR	helix-turn-helix	domain
Rrf2	PF02082.20	gi|529043608|ref|YP_008369827.1|	-	1.9e-07	31.3	0.0	0.021	15.1	0.0	2.4	2	0	0	2	2	2	2	Transcriptional	regulator
HTH_27	PF13463.6	gi|529043608|ref|YP_008369827.1|	-	2.8e-07	30.9	1.2	3.8e-06	27.3	0.4	2.3	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_20	PF12840.7	gi|529043608|ref|YP_008369827.1|	-	2.9e-07	30.4	0.5	0.035	14.2	0.2	2.7	2	0	0	2	2	2	2	Helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|529043608|ref|YP_008369827.1|	-	5.9e-07	29.4	0.0	0.0007	19.5	0.0	2.5	2	0	0	2	2	2	2	Crp-like	helix-turn-helix	domain
HTH_23	PF13384.6	gi|529043608|ref|YP_008369827.1|	-	2e-06	27.4	0.1	0.013	15.2	0.0	2.5	2	0	0	2	2	2	2	Homeodomain-like	domain
HTH_29	PF13551.6	gi|529043608|ref|YP_008369827.1|	-	5.8e-06	26.2	0.3	0.059	13.4	0.0	2.5	2	0	0	2	2	2	2	Winged	helix-turn	helix
HTH_28	PF13518.6	gi|529043608|ref|YP_008369827.1|	-	2.3e-05	24.4	0.2	0.021	15.0	0.0	2.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|529043608|ref|YP_008369827.1|	-	8.5e-05	22.3	0.0	0.2	11.5	0.0	2.5	2	0	0	2	2	2	2	Bacterial	regulatory	protein,	arsR	family
GntR	PF00392.21	gi|529043608|ref|YP_008369827.1|	-	0.0003	20.4	0.2	1.3	8.7	0.0	2.8	3	0	0	3	3	3	2	Bacterial	regulatory	proteins,	gntR	family
DUF746	PF05344.11	gi|529043608|ref|YP_008369827.1|	-	0.0022	17.8	0.0	0.023	14.5	0.0	2.4	2	0	0	2	2	2	1	Domain	of	Unknown	Function	(DUF746)
Penicillinase_R	PF03965.16	gi|529043608|ref|YP_008369827.1|	-	0.0023	18.3	0.0	2.6	8.4	0.0	2.3	2	0	0	2	2	2	2	Penicillinase	repressor
HTH_38	PF13936.6	gi|529043608|ref|YP_008369827.1|	-	0.003	17.3	0.9	2.9	7.7	0.0	2.8	3	0	0	3	3	3	2	Helix-turn-helix	domain
Crp	PF00325.20	gi|529043608|ref|YP_008369827.1|	-	0.0048	16.5	0.9	0.026	14.2	0.3	2.3	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	crp	family
Sigma70_r4	PF04545.16	gi|529043608|ref|YP_008369827.1|	-	0.0082	15.6	0.1	2.2	7.9	0.0	2.4	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_11	PF08279.12	gi|529043608|ref|YP_008369827.1|	-	0.022	14.7	0.1	1.7	8.6	0.1	2.6	2	0	0	2	2	2	0	HTH	domain
HTH_41	PF14502.6	gi|529043608|ref|YP_008369827.1|	-	0.028	14.1	0.0	0.11	12.2	0.0	1.9	2	0	0	2	2	2	0	Helix-turn-helix	domain
LZ_Tnp_IS481	PF13011.6	gi|529043608|ref|YP_008369827.1|	-	0.03	14.8	0.0	0.068	13.7	0.0	1.6	1	0	0	1	1	1	0	leucine-zipper	of	insertion	element	IS481
RPA_C	PF08784.11	gi|529043608|ref|YP_008369827.1|	-	0.04	14.6	0.0	0.094	13.4	0.0	1.6	2	0	0	2	2	1	0	Replication	protein	A	C	terminal
PqqD	PF05402.12	gi|529043608|ref|YP_008369827.1|	-	0.099	13.0	0.5	6.4	7.2	0.0	3.7	4	2	0	4	4	3	0	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
PaaX	PF07848.12	gi|529043608|ref|YP_008369827.1|	-	0.11	12.7	0.3	0.4	10.9	0.1	2.1	3	0	0	3	3	1	0	PaaX-like	protein
HTH_47	PF16221.5	gi|529043608|ref|YP_008369827.1|	-	0.12	11.9	0.0	6.8	6.3	0.0	2.6	3	0	0	3	3	3	0	winged	helix-turn-helix
HTH_Tnp_Tc3_1	PF11427.8	gi|529043608|ref|YP_008369827.1|	-	0.15	12.0	0.4	19	5.2	0.0	3.1	3	0	0	3	3	3	0	Tc3	transposase
PIN	PF01850.21	gi|529043609|ref|YP_008369828.1|	-	3.6e-12	46.8	0.1	4.3e-12	46.6	0.1	1.0	1	0	0	1	1	1	1	PIN	domain
MazE_antitoxin	PF04014.18	gi|529043610|ref|YP_008369829.1|	-	0.00011	22.1	0.1	0.00015	21.6	0.1	1.2	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
PrlF_antitoxin	PF15937.5	gi|529043610|ref|YP_008369829.1|	-	0.0023	18.3	0.0	0.003	18.0	0.0	1.1	1	0	0	1	1	1	1	prlF	antitoxin	for	toxin	YhaV_toxin
SWIM	PF04434.17	gi|529043611|ref|YP_008369830.1|	-	0.0016	18.1	0.7	0.0049	16.5	0.7	1.9	1	1	0	1	1	1	1	SWIM	zinc	finger
HTH_23	PF13384.6	gi|529043612|ref|YP_008369831.1|	-	1.3e-05	24.8	0.1	2.9e-05	23.7	0.1	1.5	1	0	0	1	1	1	1	Homeodomain-like	domain
TrmB	PF01978.19	gi|529043612|ref|YP_008369831.1|	-	0.00035	20.4	0.0	0.00057	19.7	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_29	PF13551.6	gi|529043612|ref|YP_008369831.1|	-	0.0012	18.8	0.0	0.0023	17.9	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_28	PF13518.6	gi|529043612|ref|YP_008369831.1|	-	0.018	15.2	0.1	0.048	13.8	0.1	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
MarR	PF01047.22	gi|529043612|ref|YP_008369831.1|	-	0.026	14.4	0.0	0.045	13.7	0.0	1.3	1	0	0	1	1	1	0	MarR	family
Aminoglyc_resit	PF10706.9	gi|529043613|ref|YP_008369832.1|	-	0.00021	21.0	0.1	0.12	12.1	0.0	2.2	1	1	1	2	2	2	2	Aminoglycoside-2''-adenylyltransferase
NTP_transf_5	PF14907.6	gi|529043613|ref|YP_008369832.1|	-	0.002	17.8	0.1	0.0027	17.4	0.1	1.4	1	0	0	1	1	1	1	Uncharacterised	nucleotidyltransferase
AbiEii	PF08843.11	gi|529043613|ref|YP_008369832.1|	-	0.0049	16.9	1.0	0.014	15.3	1.0	1.9	1	1	0	1	1	1	1	Nucleotidyl	transferase	AbiEii	toxin,	Type	IV	TA	system
Peptidase_M78	PF06114.13	gi|529043614|ref|YP_008369833.1|	-	7.3e-05	22.7	0.1	0.00012	22.0	0.1	1.4	1	0	0	1	1	1	1	IrrE	N-terminal-like	domain
Aminopep	PF10023.9	gi|529043614|ref|YP_008369833.1|	-	0.018	14.4	0.0	0.037	13.4	0.0	1.5	1	0	0	1	1	1	0	Putative	aminopeptidase
SprT-like	PF10263.9	gi|529043614|ref|YP_008369833.1|	-	0.039	13.8	0.4	0.18	11.6	0.1	2.0	2	0	0	2	2	2	0	SprT-like	family
OGG_N	PF07934.12	gi|529043614|ref|YP_008369833.1|	-	0.11	12.6	0.2	1.3	9.1	0.0	2.2	2	1	0	2	2	2	0	8-oxoguanine	DNA	glycosylase,	N-terminal	domain
DUF2059	PF09832.9	gi|529043617|ref|YP_008369836.1|	-	0.072	13.2	0.3	2.4	8.3	0.0	2.5	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2059)
Rrf2	PF02082.20	gi|529043622|ref|YP_008369841.1|	-	0.004	17.5	0.0	0.35	11.3	0.0	2.4	2	0	0	2	2	2	1	Transcriptional	regulator
HTH_IclR	PF09339.10	gi|529043622|ref|YP_008369841.1|	-	0.0058	16.4	0.0	0.01	15.6	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
TrmB	PF01978.19	gi|529043622|ref|YP_008369841.1|	-	0.029	14.2	0.1	0.05	13.5	0.1	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_36	PF13730.6	gi|529043622|ref|YP_008369841.1|	-	0.077	13.0	0.0	0.13	12.2	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_28	PF13518.6	gi|529043622|ref|YP_008369841.1|	-	0.079	13.1	0.2	0.15	12.2	0.0	1.6	2	0	0	2	2	2	0	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|529043622|ref|YP_008369841.1|	-	0.084	12.8	0.0	0.19	11.7	0.0	1.5	1	0	0	1	1	1	0	MarR	family
Phage_NinH	PF06322.11	gi|529043622|ref|YP_008369841.1|	-	0.085	12.8	0.0	0.15	12.0	0.0	1.4	1	0	0	1	1	1	0	Phage	NinH	protein
TSC22	PF01166.18	gi|529043623|ref|YP_008369842.1|	-	0.019	15.2	0.1	0.029	14.7	0.1	1.2	1	0	0	1	1	1	0	TSC-22/dip/bun	family
HTH_10	PF04967.12	gi|529043625|ref|YP_008369844.1|	-	2.5e-18	65.6	0.2	6.6e-18	64.2	0.2	1.8	1	0	0	1	1	1	1	HTH	DNA	binding	domain
MarR	PF01047.22	gi|529043625|ref|YP_008369844.1|	-	0.0055	16.6	0.2	0.022	14.7	0.1	2.1	2	1	0	2	2	2	1	MarR	family
MarR_2	PF12802.7	gi|529043625|ref|YP_008369844.1|	-	0.006	16.5	0.1	0.01	15.7	0.1	1.4	1	0	0	1	1	1	1	MarR	family
HTH_3	PF01381.22	gi|529043625|ref|YP_008369844.1|	-	0.0078	16.3	0.1	0.05	13.7	0.1	2.3	2	0	0	2	2	2	1	Helix-turn-helix
HTH_17	PF12728.7	gi|529043625|ref|YP_008369844.1|	-	0.011	15.9	0.0	0.026	14.7	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_37	PF13744.6	gi|529043625|ref|YP_008369844.1|	-	0.012	15.6	0.1	0.023	14.7	0.1	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_1	PF00126.27	gi|529043625|ref|YP_008369844.1|	-	0.014	15.3	1.2	0.035	14.1	0.5	2.0	2	0	0	2	2	2	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_Crp_2	PF13545.6	gi|529043625|ref|YP_008369844.1|	-	0.024	14.6	0.3	0.045	13.7	0.3	1.5	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_24	PF13412.6	gi|529043625|ref|YP_008369844.1|	-	0.028	14.0	0.1	0.063	12.8	0.1	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_31	PF13560.6	gi|529043625|ref|YP_008369844.1|	-	0.04	14.3	0.6	0.27	11.6	0.3	2.3	2	1	0	2	2	2	0	Helix-turn-helix	domain
AbiEi_4	PF13338.6	gi|529043625|ref|YP_008369844.1|	-	0.04	14.1	0.1	0.17	12.1	0.1	2.0	2	0	0	2	2	2	0	Transcriptional	regulator,	AbiEi	antitoxin
HTH_5	PF01022.20	gi|529043625|ref|YP_008369844.1|	-	0.047	13.6	0.0	0.096	12.6	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_psq	PF05225.16	gi|529043625|ref|YP_008369844.1|	-	0.048	13.4	0.4	0.31	10.8	0.0	2.4	2	0	0	2	2	2	0	helix-turn-helix,	Psq	domain
RelB	PF04221.12	gi|529043625|ref|YP_008369844.1|	-	0.066	13.2	0.0	0.11	12.4	0.0	1.4	1	0	0	1	1	1	0	RelB	antitoxin
HTH_23	PF13384.6	gi|529043625|ref|YP_008369844.1|	-	0.066	13.0	0.0	0.13	12.1	0.0	1.6	1	0	0	1	1	1	0	Homeodomain-like	domain
TetR_N	PF00440.23	gi|529043625|ref|YP_008369844.1|	-	0.075	12.8	0.0	0.17	11.7	0.0	1.7	1	1	0	1	1	1	0	Bacterial	regulatory	proteins,	tetR	family
HTH_Tnp_1_2	PF13022.6	gi|529043625|ref|YP_008369844.1|	-	0.083	13.0	0.0	0.14	12.3	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	of	insertion	element	transposase
Sigma70_r4	PF04545.16	gi|529043625|ref|YP_008369844.1|	-	0.11	12.0	1.0	0.3	10.6	1.0	1.8	1	1	0	1	1	1	0	Sigma-70,	region	4
HTH_28	PF13518.6	gi|529043625|ref|YP_008369844.1|	-	0.15	12.2	0.1	0.39	10.9	0.1	1.8	1	0	0	1	1	1	0	Helix-turn-helix	domain
Aldo_ket_red	PF00248.21	gi|529043626|ref|YP_008369845.1|	-	1.2e-49	169.1	0.0	2.1e-47	161.7	0.0	2.0	1	1	0	1	1	1	1	Aldo/keto	reductase	family
Cupin_2	PF07883.11	gi|529043627|ref|YP_008369846.1|	-	3.2e-14	52.4	1.8	4.5e-14	51.9	1.8	1.2	1	0	0	1	1	1	1	Cupin	domain
AraC_binding	PF02311.19	gi|529043627|ref|YP_008369846.1|	-	5.7e-10	39.2	0.1	7.3e-10	38.9	0.1	1.1	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
Cupin_1	PF00190.22	gi|529043627|ref|YP_008369846.1|	-	0.00019	21.1	0.0	0.00022	20.9	0.0	1.1	1	0	0	1	1	1	1	Cupin
Pirin_C	PF05726.13	gi|529043627|ref|YP_008369846.1|	-	0.00068	20.0	0.0	0.0008	19.7	0.0	1.2	1	0	0	1	1	1	1	Pirin	C-terminal	cupin	domain
Cupin_3	PF05899.12	gi|529043627|ref|YP_008369846.1|	-	0.0023	17.6	0.3	0.005	16.5	0.3	1.7	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF861)
Cupin_6	PF12852.7	gi|529043627|ref|YP_008369846.1|	-	0.0041	16.9	0.0	0.0046	16.7	0.0	1.1	1	0	0	1	1	1	1	Cupin
Auxin_BP	PF02041.16	gi|529043627|ref|YP_008369846.1|	-	0.081	12.6	0.0	0.093	12.4	0.0	1.1	1	0	0	1	1	1	0	Auxin	binding	protein
Ectoine_synth	PF06339.12	gi|529043627|ref|YP_008369846.1|	-	0.084	13.1	0.0	0.095	12.9	0.0	1.1	1	0	0	1	1	1	0	Ectoine	synthase
Aldo_ket_red	PF00248.21	gi|529043628|ref|YP_008369847.1|	-	7.8e-73	245.2	0.0	8.7e-73	245.1	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
RHH_5	PF07878.11	gi|529043628|ref|YP_008369847.1|	-	0.11	12.4	0.1	0.23	11.3	0.1	1.5	1	0	0	1	1	1	0	CopG-like	RHH_1	or	ribbon-helix-helix	domain,	RHH_5
Flavodoxin_4	PF12682.7	gi|529043629|ref|YP_008369848.1|	-	2e-15	56.8	0.0	2.8e-15	56.4	0.0	1.2	1	0	0	1	1	1	1	Flavodoxin
Flavodoxin_5	PF12724.7	gi|529043629|ref|YP_008369848.1|	-	4.4e-07	30.2	0.0	0.00032	21.0	0.0	2.2	1	1	1	2	2	2	2	Flavodoxin	domain
FMN_red	PF03358.15	gi|529043629|ref|YP_008369848.1|	-	7.6e-05	22.5	0.0	0.00011	22.0	0.0	1.3	1	0	0	1	1	1	1	NADPH-dependent	FMN	reductase
Flavodoxin_1	PF00258.25	gi|529043629|ref|YP_008369848.1|	-	0.00011	22.4	0.0	0.016	15.4	0.0	2.3	1	1	0	1	1	1	1	Flavodoxin
Flavodoxin_3	PF12641.7	gi|529043629|ref|YP_008369848.1|	-	0.0015	18.3	0.0	1.4	8.6	0.0	2.1	1	1	1	2	2	2	2	Flavodoxin	domain
Flavodoxin_2	PF02525.17	gi|529043629|ref|YP_008369848.1|	-	0.017	14.8	0.0	0.02	14.6	0.0	1.2	1	0	0	1	1	1	0	Flavodoxin-like	fold
Mrr_cat	PF04471.12	gi|529043630|ref|YP_008369849.1|	-	2e-28	98.7	0.0	3.4e-28	98.0	0.0	1.4	1	0	0	1	1	1	1	Restriction	endonuclease
Mrr_cat_2	PF13156.6	gi|529043630|ref|YP_008369849.1|	-	0.0085	16.0	0.0	0.017	15.0	0.0	1.4	1	0	0	1	1	1	1	Restriction	endonuclease
zf-RING_5	PF14634.6	gi|529043630|ref|YP_008369849.1|	-	1.4	9.0	7.9	17	5.5	6.9	2.4	2	0	0	2	2	2	0	zinc-RING	finger	domain
DUF2318	PF10080.9	gi|529043632|ref|YP_008369851.1|	-	0.0059	16.7	0.1	0.0072	16.4	0.1	1.2	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2318)
RPA_interact_C	PF14768.6	gi|529043632|ref|YP_008369851.1|	-	0.0099	16.4	0.4	0.013	16.1	0.4	1.2	1	0	0	1	1	1	1	Replication	protein	A	interacting	C-terminal
zinc_ribbon_2	PF13240.6	gi|529043632|ref|YP_008369851.1|	-	0.02	14.6	1.7	4.1	7.3	0.2	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
DZR	PF12773.7	gi|529043632|ref|YP_008369851.1|	-	0.023	14.7	0.7	0.04	13.9	0.7	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
Nudix_N_2	PF14803.6	gi|529043632|ref|YP_008369851.1|	-	0.031	14.2	2.8	3.6	7.6	0.1	2.7	3	0	0	3	3	3	0	Nudix	N-terminal
C1_1	PF00130.22	gi|529043632|ref|YP_008369851.1|	-	0.08	12.8	0.9	0.12	12.3	0.9	1.3	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
DpnI	PF06044.12	gi|529043632|ref|YP_008369851.1|	-	0.092	12.4	0.4	0.11	12.1	0.4	1.2	1	0	0	1	1	1	0	Dam-replacing	family
GFA	PF04828.14	gi|529043632|ref|YP_008369851.1|	-	0.1	12.9	1.5	2.4	8.5	0.2	2.2	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
Zn-ribbon_8	PF09723.10	gi|529043632|ref|YP_008369851.1|	-	0.12	12.5	0.8	17	5.6	0.4	2.4	2	0	0	2	2	2	0	Zinc	ribbon	domain
DNA_ligase_ZBD	PF03119.16	gi|529043632|ref|YP_008369851.1|	-	0.71	9.9	4.5	1.7	8.7	0.5	2.4	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf_C2HC_14	PF18574.1	gi|529043632|ref|YP_008369851.1|	-	0.77	9.6	2.9	0.82	9.5	0.3	2.0	2	0	0	2	2	2	0	C2HC	Zing	finger	domain
Zn-ribbon_8	PF09723.10	gi|529043633|ref|YP_008369852.1|	-	0.021	14.9	1.0	4.9	7.4	0.1	2.2	2	0	0	2	2	2	0	Zinc	ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|529043633|ref|YP_008369852.1|	-	0.023	14.6	0.1	0.033	14.1	0.1	1.3	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
A2L_zn_ribbon	PF08792.10	gi|529043633|ref|YP_008369852.1|	-	0.051	13.3	1.0	1.5	8.7	0.1	2.2	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
Zn_ribbon_SprT	PF17283.2	gi|529043633|ref|YP_008369852.1|	-	0.057	13.3	2.4	0.25	11.3	0.1	2.1	2	0	0	2	2	2	0	SprT-like	zinc	ribbon	domain
RNA_POL_M_15KD	PF02150.16	gi|529043633|ref|YP_008369852.1|	-	0.097	12.6	0.2	0.097	12.6	0.2	2.1	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
zf_C2H2_10	PF18414.1	gi|529043633|ref|YP_008369852.1|	-	0.1	12.1	6.2	0.83	9.2	0.3	2.2	2	0	0	2	2	2	0	C2H2	type	zinc-finger
zinc_ribbon_13	PF09855.9	gi|529043633|ref|YP_008369852.1|	-	0.12	12.6	0.0	0.33	11.2	0.0	1.7	1	1	0	1	1	1	0	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
zf-Mss51	PF13824.6	gi|529043633|ref|YP_008369852.1|	-	0.46	10.6	3.3	1.7	8.8	3.3	2.0	1	1	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
DUF3797	PF12677.7	gi|529043633|ref|YP_008369852.1|	-	1.3	9.0	7.5	1.1	9.3	1.3	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3797)
UPF0547	PF10571.9	gi|529043633|ref|YP_008369852.1|	-	7.8	6.7	9.8	2.3	8.4	0.8	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
ABC_tran	PF00005.27	gi|529043636|ref|YP_008369855.1|	-	4.8e-27	95.1	0.0	6.7e-27	94.7	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|529043636|ref|YP_008369855.1|	-	3.5e-13	50.0	0.2	7.1e-09	35.9	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_23	PF13476.6	gi|529043636|ref|YP_008369855.1|	-	0.00026	21.6	0.0	0.00036	21.1	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|529043636|ref|YP_008369855.1|	-	0.0078	15.9	0.1	0.015	15.0	0.1	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_15	PF13175.6	gi|529043636|ref|YP_008369855.1|	-	0.0082	15.9	0.0	2.5	7.7	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
Mg_chelatase	PF01078.21	gi|529043636|ref|YP_008369855.1|	-	0.012	15.0	0.0	0.02	14.3	0.0	1.4	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_29	PF13555.6	gi|529043636|ref|YP_008369855.1|	-	0.025	14.3	0.2	0.045	13.5	0.2	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|529043636|ref|YP_008369855.1|	-	0.041	14.3	0.0	0.067	13.6	0.0	1.4	1	0	0	1	1	1	0	AAA	ATPase	domain
HepII_C	PF18675.1	gi|529043636|ref|YP_008369855.1|	-	0.041	14.0	0.1	1.6	8.9	0.0	2.9	2	1	1	3	3	3	0	Heparinase	II	C-terminal	domain
AAA_27	PF13514.6	gi|529043636|ref|YP_008369855.1|	-	0.072	12.7	0.0	0.12	11.9	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
SRP54	PF00448.22	gi|529043636|ref|YP_008369855.1|	-	0.087	12.4	0.1	0.16	11.5	0.1	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_22	PF13401.6	gi|529043636|ref|YP_008369855.1|	-	0.15	12.4	0.0	0.34	11.2	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
DUF4271	PF14093.6	gi|529043638|ref|YP_008369857.1|	-	0.006	16.5	2.6	0.0063	16.4	2.6	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4271)
Jagunal	PF07086.12	gi|529043638|ref|YP_008369857.1|	-	0.09	12.8	0.6	0.11	12.5	0.6	1.4	1	1	0	1	1	1	0	Jagunal,	ER	re-organisation	during	oogenesis
SCAMP	PF04144.13	gi|529043638|ref|YP_008369857.1|	-	0.1	12.9	2.3	0.11	12.8	2.3	1.1	1	0	0	1	1	1	0	SCAMP	family
E1-E2_ATPase	PF00122.20	gi|529043638|ref|YP_008369857.1|	-	0.15	11.5	1.5	0.22	11.0	1.5	1.3	1	0	0	1	1	1	0	E1-E2	ATPase
DUF1772	PF08592.11	gi|529043638|ref|YP_008369857.1|	-	0.77	10.1	3.1	0.59	10.5	1.8	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1772)
SPC12	PF06645.13	gi|529043638|ref|YP_008369857.1|	-	2	8.6	7.5	6.5	6.9	1.2	2.5	1	1	1	2	2	2	0	Microsomal	signal	peptidase	12	kDa	subunit	(SPC12)
HTH_20	PF12840.7	gi|529043639|ref|YP_008369858.1|	-	3.2e-10	39.9	0.8	4.9e-10	39.3	0.8	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|529043639|ref|YP_008369858.1|	-	1.3e-06	27.8	0.1	2.8e-06	26.8	0.1	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|529043639|ref|YP_008369858.1|	-	4.8e-06	26.4	0.2	1.5e-05	24.8	0.2	1.7	1	1	1	2	2	2	1	MarR	family
HTH_IclR	PF09339.10	gi|529043639|ref|YP_008369858.1|	-	6e-06	26.0	0.0	1e-05	25.3	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_11	PF08279.12	gi|529043639|ref|YP_008369858.1|	-	3.5e-05	23.7	0.1	6.3e-05	22.8	0.1	1.4	1	0	0	1	1	1	1	HTH	domain
TrmB	PF01978.19	gi|529043639|ref|YP_008369858.1|	-	6.2e-05	22.8	0.0	9e-05	22.3	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_AsnC-type	PF13404.6	gi|529043639|ref|YP_008369858.1|	-	0.00091	19.0	0.6	0.0023	17.7	0.6	1.7	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
RP-C	PF03428.13	gi|529043639|ref|YP_008369858.1|	-	0.001	18.8	0.0	0.0012	18.5	0.0	1.3	1	0	0	1	1	1	1	Replication	protein	C	N-terminal	domain
HTH_Tnp_ISL3	PF13542.6	gi|529043639|ref|YP_008369858.1|	-	0.0018	17.6	0.1	0.0039	16.6	0.1	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_23	PF13384.6	gi|529043639|ref|YP_008369858.1|	-	0.0026	17.5	0.1	0.0051	16.6	0.1	1.5	1	0	0	1	1	1	1	Homeodomain-like	domain
Sigma70_r4_2	PF08281.12	gi|529043639|ref|YP_008369858.1|	-	0.0064	16.2	0.2	0.01	15.5	0.2	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
MarR	PF01047.22	gi|529043639|ref|YP_008369858.1|	-	0.013	15.4	0.0	0.022	14.7	0.0	1.4	1	0	0	1	1	1	0	MarR	family
FUR	PF01475.19	gi|529043639|ref|YP_008369858.1|	-	0.02	15.0	0.0	0.022	14.9	0.0	1.2	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
PadR	PF03551.14	gi|529043639|ref|YP_008369858.1|	-	0.039	13.9	0.0	0.072	13.1	0.0	1.7	1	1	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
Sigma70_r4	PF04545.16	gi|529043639|ref|YP_008369858.1|	-	0.077	12.5	0.0	0.14	11.7	0.0	1.4	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_27	PF13463.6	gi|529043639|ref|YP_008369858.1|	-	0.09	13.3	0.1	0.15	12.6	0.1	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_7	PF02796.15	gi|529043639|ref|YP_008369858.1|	-	0.1	12.7	0.0	0.29	11.2	0.0	1.8	1	1	0	1	1	1	0	Helix-turn-helix	domain	of	resolvase
Acyl_transf_3	PF01757.22	gi|529043640|ref|YP_008369859.1|	-	0.093	11.8	9.1	0.11	11.5	9.1	1.0	1	0	0	1	1	1	0	Acyltransferase	family
zinc_ribbon_2	PF13240.6	gi|529043641|ref|YP_008369860.1|	-	0.0084	15.8	1.3	3.8	7.3	0.1	2.4	2	0	0	2	2	2	2	zinc-ribbon	domain
DZR	PF12773.7	gi|529043641|ref|YP_008369860.1|	-	0.017	15.2	0.9	0.026	14.6	0.9	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
Nudix_N_2	PF14803.6	gi|529043641|ref|YP_008369860.1|	-	0.017	15.0	3.3	2.1	8.4	0.1	2.7	3	0	0	3	3	3	0	Nudix	N-terminal
RPA_interact_C	PF14768.6	gi|529043641|ref|YP_008369860.1|	-	0.019	15.5	0.3	0.025	15.1	0.3	1.3	1	0	0	1	1	1	0	Replication	protein	A	interacting	C-terminal
DUF2318	PF10080.9	gi|529043641|ref|YP_008369860.1|	-	0.023	14.8	0.1	0.028	14.5	0.1	1.2	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2318)
DpnI	PF06044.12	gi|529043641|ref|YP_008369860.1|	-	0.044	13.4	0.4	0.062	12.9	0.4	1.2	1	0	0	1	1	1	0	Dam-replacing	family
GFA	PF04828.14	gi|529043641|ref|YP_008369860.1|	-	0.063	13.6	1.5	1.2	9.5	0.2	2.2	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
DNA_ligase_ZBD	PF03119.16	gi|529043641|ref|YP_008369860.1|	-	0.22	11.6	4.2	0.74	9.9	0.4	2.5	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-RRN7	PF11781.8	gi|529043641|ref|YP_008369860.1|	-	1.6	8.5	5.2	2.7	7.8	0.8	2.4	2	0	0	2	2	2	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
Cytochrom_C_2	PF01322.20	gi|529043642|ref|YP_008369861.1|	-	0.11	13.4	0.2	0.14	13.1	0.2	1.2	1	0	0	1	1	1	0	Cytochrome	C'
OrfB_IS605	PF01385.19	gi|529043643|ref|YP_008369862.1|	-	2.6e-29	101.9	0.0	4.6e-29	101.1	0.0	1.3	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|529043643|ref|YP_008369862.1|	-	5.9e-19	67.8	0.3	1.1e-18	66.9	0.3	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Sigma70_r1_1	PF03979.14	gi|529043643|ref|YP_008369862.1|	-	0.19	11.8	0.1	0.76	9.9	0.0	2.0	3	0	0	3	3	3	0	Sigma-70	factor,	region	1.1
RNase_II_C_S1	PF18614.1	gi|529043645|ref|YP_008369864.1|	-	0.056	13.4	0.1	0.078	12.9	0.1	1.2	1	0	0	1	1	1	0	RNase	II-type	exonuclease	C-terminal	S1	domain
HEPN_Apea	PF18739.1	gi|529043649|ref|YP_008369868.1|	-	1.6e-06	28.5	0.1	3.9e-06	27.2	0.1	1.6	1	0	0	1	1	1	1	Apea-like	HEPN
OrfB_Zn_ribbon	PF07282.11	gi|529043650|ref|YP_008369869.1|	-	3.2e-19	68.6	0.1	7.9e-19	67.4	0.1	1.7	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|529043650|ref|YP_008369869.1|	-	0.0011	19.1	1.8	0.0011	19.1	1.8	2.4	2	1	0	2	2	2	1	Probable	transposase
DZR	PF12773.7	gi|529043650|ref|YP_008369869.1|	-	0.0097	15.9	1.5	0.023	14.7	1.5	1.5	1	0	0	1	1	1	1	Double	zinc	ribbon
Lar_restr_allev	PF14354.6	gi|529043650|ref|YP_008369869.1|	-	0.083	13.3	1.5	0.2	12.0	1.5	1.6	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
DUF1610	PF07754.11	gi|529043650|ref|YP_008369869.1|	-	0.11	12.5	2.5	11	6.1	0.1	2.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
Cys_rich_KTR	PF14205.6	gi|529043650|ref|YP_008369869.1|	-	0.16	11.8	1.8	0.41	10.5	1.8	1.6	1	0	0	1	1	1	0	Cysteine-rich	KTR
zf-NADH-PPase	PF09297.11	gi|529043650|ref|YP_008369869.1|	-	0.2	11.4	0.1	0.2	11.4	0.1	2.7	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
EzrA	PF06160.12	gi|529043650|ref|YP_008369869.1|	-	0.21	9.7	0.4	0.32	9.1	0.4	1.1	1	0	0	1	1	1	0	Septation	ring	formation	regulator,	EzrA
N36	PF11438.8	gi|529043650|ref|YP_008369869.1|	-	0.54	10.1	2.6	1.4	8.8	2.6	1.7	1	0	0	1	1	1	0	36-mer	N-terminal	peptide	of	the	N	protein	(N36)
zinc_ribbon_2	PF13240.6	gi|529043650|ref|YP_008369869.1|	-	3.2	7.6	5.7	3.7	7.4	0.6	2.5	2	0	0	2	2	2	0	zinc-ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|529043650|ref|YP_008369869.1|	-	4.1	7.5	10.9	0.74	9.8	5.1	2.8	2	1	0	2	2	2	0	Transposase	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|529043652|ref|YP_008369871.1|	-	0.034	13.9	2.5	0.034	13.9	2.5	2.5	3	0	0	3	3	3	0	zinc-ribbon	domain
zinc_ribbon_15	PF17032.5	gi|529043652|ref|YP_008369871.1|	-	0.72	10.6	6.6	6.9	7.5	0.5	2.8	2	1	1	3	3	3	0	zinc-ribbon	family
Zf_RING	PF16744.5	gi|529043652|ref|YP_008369871.1|	-	1.4	9.1	5.2	13	6.0	0.1	3.4	4	0	0	4	4	4	0	KIAA1045	RING	finger
RNA_POL_M_15KD	PF02150.16	gi|529043652|ref|YP_008369871.1|	-	2.4	8.1	9.4	12	5.9	0.2	3.6	3	1	0	3	3	3	0	RNA	polymerases	M/15	Kd	subunit
DZR	PF12773.7	gi|529043652|ref|YP_008369871.1|	-	3.5	7.7	9.2	2	8.5	1.2	2.6	2	1	0	2	2	2	0	Double	zinc	ribbon
TFIIB	PF00382.19	gi|529043653|ref|YP_008369872.1|	-	1.3e-29	102.0	2.3	9.7e-16	57.6	0.4	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|529043653|ref|YP_008369872.1|	-	3.6e-12	45.6	2.3	6.2e-12	44.8	2.3	1.4	1	0	0	1	1	1	1	TFIIB	zinc-binding
RB_B	PF01857.20	gi|529043653|ref|YP_008369872.1|	-	0.019	15.0	0.0	0.03	14.3	0.0	1.3	1	0	0	1	1	1	0	Retinoblastoma-associated	protein	B	domain
UPF0547	PF10571.9	gi|529043653|ref|YP_008369872.1|	-	0.019	15.0	1.9	0.05	13.7	1.9	1.7	1	0	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
DZR	PF12773.7	gi|529043653|ref|YP_008369872.1|	-	0.033	14.2	1.9	0.073	13.1	1.2	1.8	2	0	0	2	2	2	0	Double	zinc	ribbon
OrfB_Zn_ribbon	PF07282.11	gi|529043653|ref|YP_008369872.1|	-	0.05	13.5	1.5	0.29	11.1	1.3	2.3	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
PHF5	PF03660.14	gi|529043653|ref|YP_008369872.1|	-	0.085	13.1	0.8	0.16	12.2	0.8	1.5	1	0	0	1	1	1	0	PHF5-like	protein
Zn-ribbon_8	PF09723.10	gi|529043653|ref|YP_008369872.1|	-	2.2	8.5	5.6	17	5.6	0.6	2.7	1	1	0	2	2	2	0	Zinc	ribbon	domain
DNA_methylase	PF00145.17	gi|529043654|ref|YP_008369873.1|	-	3.6e-54	184.4	0.0	4.8e-54	184.0	0.0	1.1	1	0	0	1	1	1	1	C-5	cytosine-specific	DNA	methylase
Methyltransf_25	PF13649.6	gi|529043654|ref|YP_008369873.1|	-	0.00018	22.2	0.1	0.00044	20.9	0.1	1.7	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_15	PF09445.10	gi|529043654|ref|YP_008369873.1|	-	0.00027	20.6	0.0	0.00047	19.8	0.0	1.4	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
Methyltransf_31	PF13847.6	gi|529043654|ref|YP_008369873.1|	-	0.18	11.6	0.2	0.31	10.8	0.2	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
TehB	PF03848.14	gi|529043654|ref|YP_008369873.1|	-	0.2	11.1	0.0	0.3	10.5	0.0	1.2	1	0	0	1	1	1	0	Tellurite	resistance	protein	TehB
Helicase_C	PF00271.31	gi|529043656|ref|YP_008369875.1|	-	2.6e-07	31.0	0.0	7.7e-07	29.4	0.0	1.8	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.29	gi|529043656|ref|YP_008369875.1|	-	6.7e-05	22.7	0.0	0.32	10.8	0.0	2.3	2	0	0	2	2	2	2	DEAD/DEAH	box	helicase
Sod_Fe_C	PF02777.18	gi|529043656|ref|YP_008369875.1|	-	0.076	13.2	0.0	0.15	12.3	0.0	1.4	1	0	0	1	1	1	0	Iron/manganese	superoxide	dismutases,	C-terminal	domain
Lectin_N	PF03954.14	gi|529043656|ref|YP_008369875.1|	-	0.24	11.2	0.0	0.46	10.2	0.0	1.4	1	0	0	1	1	1	0	Hepatic	lectin,	N-terminal	domain
AIP3	PF03915.13	gi|529043657|ref|YP_008369876.1|	-	0.068	12.3	0.2	0.14	11.2	0.2	1.4	1	0	0	1	1	1	0	Actin	interacting	protein	3
Ribosomal_L32p	PF01783.23	gi|529043658|ref|YP_008369877.1|	-	0.043	14.1	0.0	0.051	13.8	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	L32p	protein	family
ISG65-75	PF11727.8	gi|529043658|ref|YP_008369877.1|	-	0.086	12.1	0.0	0.092	12.0	0.0	1.0	1	0	0	1	1	1	0	Invariant	surface	glycoprotein
tRNA_anti-codon	PF01336.25	gi|529043661|ref|YP_008369880.1|	-	0.0044	17.0	0.1	0.0095	15.9	0.1	1.6	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
tRNA_anti_2	PF13742.6	gi|529043661|ref|YP_008369880.1|	-	0.044	14.0	0.0	0.097	12.9	0.0	1.5	1	0	0	1	1	1	0	OB-fold	nucleic	acid	binding	domain
HalOD1	PF18545.1	gi|529043662|ref|YP_008369881.1|	-	1.1e-06	28.8	0.5	1.4e-06	28.5	0.5	1.3	1	0	0	1	1	1	1	Halobacterial	output	domain	1
DUF2250	PF10007.9	gi|529043663|ref|YP_008369882.1|	-	0.00025	21.1	0.0	0.0026	17.8	0.0	1.9	1	1	1	2	2	2	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
Mrr_N	PF14338.6	gi|529043663|ref|YP_008369882.1|	-	0.0035	17.4	0.0	0.0045	17.1	0.0	1.3	1	0	0	1	1	1	1	Mrr	N-terminal	domain
HTH_AsnC-type	PF13404.6	gi|529043663|ref|YP_008369882.1|	-	0.0087	15.9	0.1	0.012	15.5	0.1	1.2	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.6	gi|529043663|ref|YP_008369882.1|	-	0.018	14.6	0.0	0.084	12.5	0.0	1.9	1	1	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|529043663|ref|YP_008369882.1|	-	0.023	14.5	0.0	0.027	14.4	0.0	1.2	1	0	0	1	1	1	0	MarR	family
DUF4423	PF14394.6	gi|529043663|ref|YP_008369882.1|	-	0.14	11.9	0.0	0.16	11.7	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
TrmB	PF01978.19	gi|529043665|ref|YP_008369884.1|	-	3.9e-10	39.5	0.2	8.9e-10	38.3	0.2	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|529043665|ref|YP_008369884.1|	-	8.8e-08	31.6	0.0	1.2e-06	28.0	0.0	2.5	3	0	0	3	3	3	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|529043665|ref|YP_008369884.1|	-	3.8e-07	30.0	0.3	1e-06	28.7	0.3	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|529043665|ref|YP_008369884.1|	-	1.4e-05	24.9	0.0	8e-05	22.4	0.0	2.1	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|529043665|ref|YP_008369884.1|	-	5.2e-05	23.1	0.2	0.00013	21.7	0.2	1.8	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.10	gi|529043665|ref|YP_008369884.1|	-	0.00012	21.8	0.2	0.00035	20.3	0.1	1.9	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_27	PF13463.6	gi|529043665|ref|YP_008369884.1|	-	0.0048	17.4	0.1	0.0098	16.4	0.1	1.6	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
MarR	PF01047.22	gi|529043665|ref|YP_008369884.1|	-	0.011	15.6	0.0	0.024	14.6	0.0	1.6	1	0	0	1	1	1	0	MarR	family
HTH_DeoR	PF08220.12	gi|529043665|ref|YP_008369884.1|	-	0.017	14.9	0.0	0.049	13.4	0.0	1.8	2	0	0	2	2	2	0	DeoR-like	helix-turn-helix	domain
PadR	PF03551.14	gi|529043665|ref|YP_008369884.1|	-	0.053	13.5	0.0	0.14	12.1	0.0	1.8	1	1	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
HTH_29	PF13551.6	gi|529043665|ref|YP_008369884.1|	-	0.061	13.4	0.0	0.15	12.1	0.0	1.7	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_39	PF14090.6	gi|529043665|ref|YP_008369884.1|	-	0.072	12.9	0.2	8.7	6.2	0.0	2.4	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|529043665|ref|YP_008369884.1|	-	0.082	12.9	0.0	0.79	9.7	0.0	2.2	2	0	0	2	2	2	0	HTH	domain
HTH_34	PF13601.6	gi|529043665|ref|YP_008369884.1|	-	0.1	12.8	0.0	0.17	12.1	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
F-112	PF09645.10	gi|529043665|ref|YP_008369884.1|	-	0.11	12.6	0.0	17	5.5	0.0	2.2	2	0	0	2	2	2	0	F-112	protein
Penicillinase_R	PF03965.16	gi|529043665|ref|YP_008369884.1|	-	0.16	12.3	0.0	0.29	11.5	0.0	1.5	1	0	0	1	1	1	0	Penicillinase	repressor
OrfB_Zn_ribbon	PF07282.11	gi|529043666|ref|YP_008369885.1|	-	0.0041	17.0	0.2	0.0072	16.2	0.2	1.4	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Lactamase_B	PF00753.27	gi|529043668|ref|YP_008369887.1|	-	1e-07	32.2	4.7	1e-07	32.2	4.7	2.3	2	0	0	2	2	2	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|529043668|ref|YP_008369887.1|	-	3.5e-07	29.9	2.3	3.5e-07	29.9	2.3	2.0	3	0	0	3	3	3	1	Beta-lactamase	superfamily	domain
Phage_tail_U	PF06141.11	gi|529043669|ref|YP_008369888.1|	-	0.045	14.1	0.1	0.05	14.0	0.1	1.1	1	0	0	1	1	1	0	Phage	minor	tail	protein	U
Parvo_coat_N	PF08398.10	gi|529043669|ref|YP_008369888.1|	-	0.092	12.9	0.1	0.23	11.6	0.0	1.7	1	1	0	1	1	1	0	Parvovirus	coat	protein	VP1
ATG16	PF08614.11	gi|529043670|ref|YP_008369889.1|	-	0.0037	17.5	2.7	0.0037	17.5	2.7	2.0	2	0	0	2	2	2	1	Autophagy	protein	16	(ATG16)
SlyX	PF04102.12	gi|529043670|ref|YP_008369889.1|	-	0.0045	17.6	1.5	0.032	14.8	0.4	2.5	3	0	0	3	3	3	1	SlyX
HAP1_N	PF04849.13	gi|529043670|ref|YP_008369889.1|	-	0.0046	16.2	0.2	0.0072	15.6	0.2	1.2	1	0	0	1	1	1	1	HAP1	N-terminal	conserved	region
ZapB	PF06005.12	gi|529043670|ref|YP_008369889.1|	-	0.012	16.1	1.7	0.023	15.1	1.7	1.4	1	0	0	1	1	1	0	Cell	division	protein	ZapB
DivIC	PF04977.15	gi|529043670|ref|YP_008369889.1|	-	0.052	13.3	1.0	0.052	13.3	1.0	1.8	2	0	0	2	2	2	0	Septum	formation	initiator
Prefoldin	PF02996.17	gi|529043670|ref|YP_008369889.1|	-	0.5	10.3	3.0	0.48	10.3	1.6	1.7	2	0	0	2	2	2	0	Prefoldin	subunit
DS	PF01916.17	gi|529043675|ref|YP_008369894.1|	-	4.1e-99	331.5	0.0	4.7e-99	331.3	0.0	1.0	1	0	0	1	1	1	1	Deoxyhypusine	synthase
E1-E2_ATPase	PF00122.20	gi|529043676|ref|YP_008369895.1|	-	3.7e-42	143.9	0.2	3.7e-42	143.9	0.2	2.3	3	0	0	3	3	3	1	E1-E2	ATPase
Hydrolase	PF00702.26	gi|529043676|ref|YP_008369895.1|	-	1.9e-31	110.0	3.0	3.8e-31	109.0	3.0	1.5	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.26	gi|529043676|ref|YP_008369895.1|	-	5.1e-09	36.5	0.0	4e-08	33.6	0.0	2.4	2	0	0	2	2	2	1	Heavy-metal-associated	domain
Hydrolase_3	PF08282.12	gi|529043676|ref|YP_008369895.1|	-	2.2e-05	24.3	0.1	3.6e-05	23.6	0.1	1.3	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
ATPase-cat_bd	PF12156.8	gi|529043676|ref|YP_008369895.1|	-	0.12	13.1	2.1	0.15	12.8	0.4	1.9	1	1	0	2	2	2	0	Putative	metal-binding	domain	of	cation	transport	ATPase
DsbD_2	PF13386.6	gi|529043677|ref|YP_008369896.1|	-	1.2e-32	113.5	18.2	1.5e-32	113.1	18.2	1.1	1	0	0	1	1	1	1	Cytochrome	C	biogenesis	protein	transmembrane	region
Chlorosome_CsmC	PF11098.8	gi|529043677|ref|YP_008369896.1|	-	0.12	12.4	4.8	0.46	10.5	0.2	2.3	1	1	1	2	2	2	0	Chlorosome	envelope	protein	C
PIRT	PF15099.6	gi|529043677|ref|YP_008369896.1|	-	7.6	6.1	6.9	0.49	10.0	1.6	1.7	2	0	0	2	2	2	0	Phosphoinositide-interacting	protein	family
TrkA_N	PF02254.18	gi|529043678|ref|YP_008369897.1|	-	7.7e-28	97.1	3.7	6e-25	87.8	2.4	2.5	2	0	0	2	2	2	2	TrkA-N	domain
TrkA_C	PF02080.21	gi|529043678|ref|YP_008369897.1|	-	1e-14	54.1	0.8	1.9e-12	46.8	0.1	2.6	2	0	0	2	2	2	1	TrkA-C	domain
NAD_binding_7	PF13241.6	gi|529043678|ref|YP_008369897.1|	-	2.6e-09	37.4	3.0	1.5e-08	35.0	1.3	2.4	2	1	0	2	2	2	1	Putative	NAD(P)-binding
Shikimate_DH	PF01488.20	gi|529043678|ref|YP_008369897.1|	-	5.2e-07	29.8	0.8	3.3e-06	27.2	0.4	2.2	2	0	0	2	2	2	1	Shikimate	/	quinate	5-dehydrogenase
NAD_Gly3P_dh_N	PF01210.23	gi|529043678|ref|YP_008369897.1|	-	9.1e-05	22.5	0.2	0.00074	19.5	0.1	2.4	2	1	0	2	2	2	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Pyr_redox_2	PF07992.14	gi|529043678|ref|YP_008369897.1|	-	0.00013	21.3	0.5	0.0063	15.8	0.1	2.4	2	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Sacchrp_dh_NADP	PF03435.18	gi|529043678|ref|YP_008369897.1|	-	0.00016	21.9	2.0	0.00034	20.9	0.8	2.0	2	0	0	2	2	2	1	Saccharopine	dehydrogenase	NADP	binding	domain
F420_oxidored	PF03807.17	gi|529043678|ref|YP_008369897.1|	-	0.00018	22.0	1.4	0.00096	19.7	0.4	2.2	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
Pyr_redox	PF00070.27	gi|529043678|ref|YP_008369897.1|	-	0.00031	21.2	0.2	0.071	13.7	0.2	2.7	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
ApbA	PF02558.16	gi|529043678|ref|YP_008369897.1|	-	0.00046	19.9	0.3	0.00089	18.9	0.3	1.5	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
3HCDH_N	PF02737.18	gi|529043678|ref|YP_008369897.1|	-	0.0011	18.9	0.2	0.022	14.6	0.2	2.2	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
XdhC_C	PF13478.6	gi|529043678|ref|YP_008369897.1|	-	0.0013	19.2	0.7	0.42	11.1	0.5	3.1	3	1	0	4	4	4	1	XdhC	Rossmann	domain
UDPG_MGDP_dh_N	PF03721.14	gi|529043678|ref|YP_008369897.1|	-	0.0014	18.2	2.7	0.0063	16.1	0.2	2.8	2	2	1	3	3	3	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NAD_binding_10	PF13460.6	gi|529043678|ref|YP_008369897.1|	-	0.0026	17.7	1.4	0.0055	16.6	1.4	1.5	1	0	0	1	1	1	1	NAD(P)H-binding
NAD_binding_2	PF03446.15	gi|529043678|ref|YP_008369897.1|	-	0.0033	17.6	0.5	0.031	14.5	0.1	2.1	2	0	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
FAD_binding_3	PF01494.19	gi|529043678|ref|YP_008369897.1|	-	0.0057	15.9	0.0	2.4	7.3	0.1	2.2	2	0	0	2	2	2	2	FAD	binding	domain
OCD_Mu_crystall	PF02423.15	gi|529043678|ref|YP_008369897.1|	-	0.0074	15.3	1.7	0.011	14.6	1.7	1.2	1	0	0	1	1	1	1	Ornithine	cyclodeaminase/mu-crystallin	family
AlaDh_PNT_C	PF01262.21	gi|529043678|ref|YP_008369897.1|	-	0.021	14.1	2.1	0.021	14.1	0.8	1.6	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
IlvN	PF07991.12	gi|529043678|ref|YP_008369897.1|	-	0.026	14.1	1.1	0.039	13.5	0.3	1.7	2	0	0	2	2	2	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
2-Hacid_dh_C	PF02826.19	gi|529043678|ref|YP_008369897.1|	-	0.03	13.7	0.0	0.24	10.7	0.0	2.1	2	0	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
HEM4	PF02602.15	gi|529043678|ref|YP_008369897.1|	-	0.065	12.6	0.2	0.24	10.7	0.1	1.9	2	1	0	2	2	2	0	Uroporphyrinogen-III	synthase	HemD
DAO	PF01266.24	gi|529043678|ref|YP_008369897.1|	-	0.078	12.5	1.9	0.079	12.5	1.4	1.6	1	1	0	1	1	1	0	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.6	gi|529043678|ref|YP_008369897.1|	-	0.13	12.5	0.1	0.56	10.5	0.1	2.0	2	0	0	2	2	2	0	NAD(P)-binding	Rossmann-like	domain
ThiF	PF00899.21	gi|529043678|ref|YP_008369897.1|	-	0.17	11.2	1.7	4.7	6.5	0.1	2.3	1	1	1	2	2	2	0	ThiF	family
DDE_Tnp_IS1595	PF12762.7	gi|529043679|ref|YP_008369898.1|	-	1.1e-20	74.2	0.0	1.5e-20	73.8	0.0	1.2	1	0	0	1	1	1	1	ISXO2-like	transposase	domain
Zn_Tnp_IS1595	PF12760.7	gi|529043679|ref|YP_008369898.1|	-	3.4e-10	39.7	1.3	6.7e-10	38.8	1.3	1.5	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
DUF2089	PF09862.9	gi|529043679|ref|YP_008369898.1|	-	6.2e-08	32.7	0.0	1.1e-07	31.8	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2089)
Zn_Tnp_IS1	PF03811.13	gi|529043679|ref|YP_008369898.1|	-	5.9e-06	25.9	3.8	1.5e-05	24.6	3.8	1.7	1	0	0	1	1	1	1	InsA	N-terminal	domain
HTH_23	PF13384.6	gi|529043679|ref|YP_008369898.1|	-	0.0053	16.5	0.0	0.017	14.9	0.0	1.9	1	0	0	1	1	1	1	Homeodomain-like	domain
Zn-ribbon_8	PF09723.10	gi|529043679|ref|YP_008369898.1|	-	0.0083	16.2	0.6	3.5	7.8	0.1	2.5	2	0	0	2	2	2	1	Zinc	ribbon	domain
Sigma70_r4_2	PF08281.12	gi|529043679|ref|YP_008369898.1|	-	0.012	15.3	0.0	0.21	11.3	0.0	2.4	2	0	0	2	2	2	0	Sigma-70,	region	4
TackOD1	PF18551.1	gi|529043679|ref|YP_008369898.1|	-	0.013	15.1	0.2	0.022	14.4	0.2	1.2	1	0	0	1	1	1	0	Thaumarchaeal	output	domain	1
HTH_30	PF13556.6	gi|529043679|ref|YP_008369898.1|	-	0.02	14.7	0.1	0.05	13.4	0.1	1.6	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
zf-C4_Topoisom	PF01396.19	gi|529043679|ref|YP_008369898.1|	-	0.03	14.1	0.9	0.06	13.1	0.9	1.6	1	1	0	1	1	1	0	Topoisomerase	DNA	binding	C4	zinc	finger
zf-Dof	PF02701.15	gi|529043679|ref|YP_008369898.1|	-	0.041	14.0	2.6	0.082	13.1	2.6	1.5	1	0	0	1	1	1	0	Dof	domain,	zinc	finger
ADK_lid	PF05191.14	gi|529043679|ref|YP_008369898.1|	-	0.043	13.8	0.1	0.043	13.8	0.1	2.1	2	0	0	2	2	2	0	Adenylate	kinase,	active	site	lid
HTH_29	PF13551.6	gi|529043679|ref|YP_008369898.1|	-	0.083	12.9	0.5	0.28	11.2	0.1	2.0	2	0	0	2	2	2	0	Winged	helix-turn	helix
zinc-ribbons_6	PF07191.12	gi|529043679|ref|YP_008369898.1|	-	0.11	12.5	0.2	0.22	11.5	0.2	1.5	1	0	0	1	1	1	0	zinc-ribbons
Zn_ribbon_recom	PF13408.6	gi|529043679|ref|YP_008369898.1|	-	0.15	12.6	2.5	0.49	11.0	2.5	1.8	1	0	0	1	1	1	0	Recombinase	zinc	beta	ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|529043679|ref|YP_008369898.1|	-	0.17	11.5	1.5	0.47	10.0	1.5	1.8	1	1	0	1	1	1	0	TFIIB	zinc-binding
HTH_28	PF13518.6	gi|529043679|ref|YP_008369898.1|	-	0.2	11.8	0.2	0.2	11.8	0.2	2.3	3	0	0	3	3	2	0	Helix-turn-helix	domain
zf-C2H2_4	PF13894.6	gi|529043679|ref|YP_008369898.1|	-	0.33	11.9	1.4	1.3	10.0	0.2	2.4	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zf-ISL3	PF14690.6	gi|529043679|ref|YP_008369898.1|	-	0.95	10.2	5.5	9.6	7.0	0.2	2.8	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zf-C2HC_2	PF13913.6	gi|529043679|ref|YP_008369898.1|	-	4.3	7.3	8.0	0.22	11.5	1.4	2.2	2	0	0	2	2	2	0	zinc-finger	of	a	C2HC-type
DDE_Tnp_1	PF01609.21	gi|529043681|ref|YP_008369900.1|	-	1.6e-12	47.6	1.3	3e-12	46.6	1.3	1.4	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_2	PF13586.6	gi|529043681|ref|YP_008369900.1|	-	0.022	15.1	1.2	0.051	13.9	0.1	2.0	2	1	0	2	2	2	0	Transposase	DDE	domain
DUF772	PF05598.11	gi|529043681|ref|YP_008369900.1|	-	0.038	14.0	0.6	0.075	13.1	0.1	1.8	2	0	0	2	2	2	0	Transposase	domain	(DUF772)
CbiA	PF01656.23	gi|529043682|ref|YP_008369901.1|	-	5.7e-13	49.0	0.0	5.9e-13	49.0	0.0	1.1	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.6	gi|529043682|ref|YP_008369901.1|	-	3.3e-12	46.7	0.0	4e-12	46.4	0.0	1.0	1	0	0	1	1	1	1	AAA	domain
ParA	PF10609.9	gi|529043682|ref|YP_008369901.1|	-	1.6e-07	31.1	0.0	1.9e-07	30.8	0.0	1.1	1	0	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
MipZ	PF09140.11	gi|529043682|ref|YP_008369901.1|	-	4.4e-05	22.9	0.0	5e-05	22.7	0.0	1.1	1	0	0	1	1	1	1	ATPase	MipZ
CBP_BcsQ	PF06564.12	gi|529043682|ref|YP_008369901.1|	-	0.00013	21.6	0.1	0.00015	21.3	0.1	1.2	1	1	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
CLP1_P	PF16575.5	gi|529043682|ref|YP_008369901.1|	-	0.00065	19.6	0.0	0.00091	19.1	0.0	1.2	1	0	0	1	1	1	1	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
ArsA_ATPase	PF02374.15	gi|529043682|ref|YP_008369901.1|	-	0.0016	17.7	0.0	0.0019	17.5	0.0	1.2	1	0	0	1	1	1	1	Anion-transporting	ATPase
ATP_bind_1	PF03029.17	gi|529043682|ref|YP_008369901.1|	-	0.0024	17.7	0.0	0.0042	16.9	0.0	1.3	1	0	0	1	1	1	1	Conserved	hypothetical	ATP	binding	protein
Fer4_NifH	PF00142.18	gi|529043682|ref|YP_008369901.1|	-	0.0065	16.0	0.0	0.0065	16.0	0.0	1.2	1	0	0	1	1	1	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
SRP54	PF00448.22	gi|529043682|ref|YP_008369901.1|	-	0.0073	15.9	0.0	0.0099	15.5	0.0	1.1	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
IstB_IS21	PF01695.17	gi|529043682|ref|YP_008369901.1|	-	0.029	14.1	0.0	0.036	13.8	0.0	1.2	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_18	PF13238.6	gi|529043682|ref|YP_008369901.1|	-	0.034	14.7	0.0	0.038	14.5	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_14	PF13173.6	gi|529043682|ref|YP_008369901.1|	-	0.039	14.0	0.0	0.06	13.4	0.0	1.3	1	1	0	1	1	1	0	AAA	domain
AAA_24	PF13479.6	gi|529043682|ref|YP_008369901.1|	-	0.039	13.7	0.0	0.041	13.6	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.6	gi|529043682|ref|YP_008369901.1|	-	0.083	13.0	0.0	0.086	13.0	0.0	1.1	1	0	0	1	1	1	0	AAA	domain
AAA_5	PF07728.14	gi|529043682|ref|YP_008369901.1|	-	0.096	12.7	0.0	0.1	12.6	0.0	1.1	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
KTI12	PF08433.10	gi|529043682|ref|YP_008369901.1|	-	0.19	11.1	0.0	0.24	10.8	0.0	1.1	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
DUF3464	PF11947.8	gi|529043685|ref|YP_008369904.1|	-	0.12	12.2	0.3	0.12	12.2	0.3	1.0	1	0	0	1	1	1	0	Photosynthesis	affected	mutant	68
12TM_1	PF09847.9	gi|529043690|ref|YP_008369909.1|	-	0.2	10.7	3.7	0.23	10.5	3.7	1.0	1	0	0	1	1	1	0	Membrane	protein	of	12	TMs
DDE_Tnp_1	PF01609.21	gi|529043693|ref|YP_008369912.1|	-	8.7e-23	81.1	0.0	1.2e-22	80.6	0.0	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_2	PF04693.12	gi|529043693|ref|YP_008369912.1|	-	0.039	13.2	0.0	0.087	12.0	0.0	1.5	2	0	0	2	2	2	0	Archaeal	putative	transposase	ISC1217
DDE_Tnp_IS66	PF03050.14	gi|529043694|ref|YP_008369913.1|	-	4.2e-50	170.8	0.2	5.4e-50	170.4	0.2	1.1	1	0	0	1	1	1	1	Transposase	IS66	family
zf-IS66	PF13005.7	gi|529043694|ref|YP_008369913.1|	-	0.00012	22.4	0.8	0.00032	21.0	0.8	1.7	1	0	0	1	1	1	1	zinc-finger	binding	domain	of	transposase	IS66
DDE_Tnp_IS240	PF13610.6	gi|529043694|ref|YP_008369913.1|	-	0.071	13.3	0.0	0.16	12.2	0.0	1.7	1	1	0	1	1	1	0	DDE	domain
DUF2249	PF10006.9	gi|529043695|ref|YP_008369914.1|	-	0.057	13.3	0.9	0.072	13.0	0.2	1.6	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2249)
ABC_tran	PF00005.27	gi|529043696|ref|YP_008369915.1|	-	1e-28	100.6	0.0	1.3e-28	100.2	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|529043696|ref|YP_008369915.1|	-	2.9e-17	63.5	0.2	9.2e-12	45.4	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
BCA_ABC_TP_C	PF12399.8	gi|529043696|ref|YP_008369915.1|	-	0.0063	16.4	0.1	0.049	13.6	0.1	2.3	2	0	0	2	2	2	1	Branched-chain	amino	acid	ATP-binding	cassette	transporter
AAA_15	PF13175.6	gi|529043696|ref|YP_008369915.1|	-	0.0073	16.1	0.0	3.6	7.2	0.0	2.1	1	1	0	2	2	2	2	AAA	ATPase	domain
AAA_23	PF13476.6	gi|529043696|ref|YP_008369915.1|	-	0.015	15.8	1.1	0.026	15.0	0.3	1.7	1	1	0	2	2	2	0	AAA	domain
AAA_30	PF13604.6	gi|529043696|ref|YP_008369915.1|	-	0.023	14.4	0.0	0.045	13.5	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Zeta_toxin	PF06414.12	gi|529043696|ref|YP_008369915.1|	-	0.026	13.8	0.0	0.041	13.2	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
AAA	PF00004.29	gi|529043696|ref|YP_008369915.1|	-	0.045	14.2	0.0	0.18	12.2	0.0	1.9	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.6	gi|529043696|ref|YP_008369915.1|	-	0.087	13.2	0.0	0.13	12.7	0.0	1.3	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_13	PF13166.6	gi|529043696|ref|YP_008369915.1|	-	0.13	10.9	0.2	0.53	8.9	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
SRP54	PF00448.22	gi|529043696|ref|YP_008369915.1|	-	0.13	11.9	0.2	0.26	10.9	0.1	1.5	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
YjcB	PF15940.5	gi|529043697|ref|YP_008369916.1|	-	0.71	10.1	4.2	2.4	8.4	0.0	3.1	3	0	0	3	3	3	0	Family	of	unknown	function
DIM	PF08194.12	gi|529043698|ref|YP_008369917.1|	-	0.072	13.3	1.8	0.11	12.8	1.8	1.4	1	0	0	1	1	1	0	DIM	protein
DDE_Tnp_1	PF01609.21	gi|529043699|ref|YP_008369918.1|	-	8.2e-20	71.4	0.0	1.2e-19	70.8	0.0	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|529043699|ref|YP_008369918.1|	-	0.00048	20.1	0.1	0.0009	19.2	0.1	1.5	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
PDDEXK_1	PF12705.7	gi|529043700|ref|YP_008369919.1|	-	6.9e-14	52.4	0.0	1.9e-13	50.9	0.0	1.9	2	1	0	2	2	2	1	PD-(D/E)XK	nuclease	superfamily
UvrD-helicase	PF00580.21	gi|529043701|ref|YP_008369920.1|	-	2.9e-50	171.6	0.7	2.1e-49	168.8	0.7	2.0	1	1	0	1	1	1	1	UvrD/REP	helicase	N-terminal	domain
UvrD_C	PF13361.6	gi|529043701|ref|YP_008369920.1|	-	4.2e-31	108.6	0.0	1.7e-18	67.2	0.0	2.3	1	1	1	2	2	2	2	UvrD-like	helicase	C-terminal	domain
AAA_19	PF13245.6	gi|529043701|ref|YP_008369920.1|	-	1.9e-24	86.7	0.0	1.5e-23	83.8	0.0	2.4	1	1	0	1	1	1	1	AAA	domain
UvrD_C_2	PF13538.6	gi|529043701|ref|YP_008369920.1|	-	1.3e-09	37.7	0.1	0.00012	21.9	0.1	2.6	2	0	0	2	2	2	2	UvrD-like	helicase	C-terminal	domain
PDDEXK_1	PF12705.7	gi|529043701|ref|YP_008369920.1|	-	5.4e-09	36.3	5.3	1e-07	32.2	0.8	2.8	2	1	1	3	3	3	1	PD-(D/E)XK	nuclease	superfamily
AAA_30	PF13604.6	gi|529043701|ref|YP_008369920.1|	-	2.5e-06	27.3	0.0	1.4e-05	24.9	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
Viral_helicase1	PF01443.18	gi|529043701|ref|YP_008369920.1|	-	0.0017	18.1	0.2	9.1	5.9	0.0	3.4	3	0	0	3	3	3	2	Viral	(Superfamily	1)	RNA	helicase
AAA_12	PF13087.6	gi|529043701|ref|YP_008369920.1|	-	0.0023	17.6	0.0	0.025	14.2	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
AAA_11	PF13086.6	gi|529043701|ref|YP_008369920.1|	-	0.012	15.4	0.0	0.55	10.0	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
DUF2800	PF10926.8	gi|529043701|ref|YP_008369920.1|	-	0.033	13.5	0.0	0.064	12.5	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2800)
AAA_22	PF13401.6	gi|529043701|ref|YP_008369920.1|	-	0.1	12.9	0.1	0.47	10.7	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
Helicase_C	PF00271.31	gi|529043702|ref|YP_008369921.1|	-	4.2e-23	81.8	0.0	1e-22	80.5	0.0	1.7	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
SNF2_N	PF00176.23	gi|529043702|ref|YP_008369921.1|	-	2.1e-18	66.2	0.0	1.8e-16	59.8	0.0	2.4	1	1	0	1	1	1	1	SNF2	family	N-terminal	domain
ResIII	PF04851.15	gi|529043702|ref|YP_008369921.1|	-	1.9e-11	44.2	0.0	1e-10	41.9	0.0	2.3	2	1	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.29	gi|529043702|ref|YP_008369921.1|	-	5.8e-06	26.2	0.0	1.5e-05	24.9	0.0	1.7	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
RapA_C	PF12137.8	gi|529043702|ref|YP_008369921.1|	-	0.00076	18.6	8.0	0.001	18.2	4.5	2.5	1	1	1	2	2	2	1	RNA	polymerase	recycling	family	C-terminal
Helicase_C_4	PF13871.6	gi|529043702|ref|YP_008369921.1|	-	0.0013	18.4	0.0	0.062	13.0	0.0	2.4	2	0	0	2	2	2	1	C-terminal	domain	on	Strawberry	notch	homologue
AAA_34	PF13872.6	gi|529043702|ref|YP_008369921.1|	-	0.0093	14.9	0.5	0.037	12.9	0.5	1.9	1	1	0	1	1	1	1	P-loop	containing	NTP	hydrolase	pore-1
KxDL	PF10241.9	gi|529043702|ref|YP_008369921.1|	-	0.043	14.1	2.0	1.1	9.6	1.7	2.8	2	0	0	2	2	2	0	Uncharacterized	conserved	protein
DUF2075	PF09848.9	gi|529043702|ref|YP_008369921.1|	-	0.085	12.1	2.9	0.11	11.7	0.0	2.7	4	0	0	4	4	4	0	Uncharacterized	conserved	protein	(DUF2075)
DUF16	PF01519.16	gi|529043702|ref|YP_008369921.1|	-	1.9	9.1	5.9	0.52	10.8	1.5	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	DUF16
PglZ	PF08665.12	gi|529043704|ref|YP_008369923.1|	-	2.8e-09	37.3	0.0	5.3e-09	36.4	0.0	1.4	1	0	0	1	1	1	1	PglZ	domain
SMC_N	PF02463.19	gi|529043705|ref|YP_008369924.1|	-	7e-20	71.4	0.1	2.1e-19	69.8	0.1	1.7	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|529043705|ref|YP_008369924.1|	-	1.9e-18	67.7	0.1	1.9e-18	67.7	0.1	3.5	1	1	0	2	2	1	1	AAA	domain
AAA_15	PF13175.6	gi|529043705|ref|YP_008369924.1|	-	8e-18	65.3	0.2	7.6e-16	58.8	0.2	2.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_21	PF13304.6	gi|529043705|ref|YP_008369924.1|	-	1e-12	48.5	11.1	7.4e-07	29.3	4.6	2.9	2	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_13	PF13166.6	gi|529043705|ref|YP_008369924.1|	-	6.9e-10	38.2	6.7	2.5e-08	33.1	2.1	3.6	3	1	0	3	3	3	1	AAA	domain
AAA_29	PF13555.6	gi|529043705|ref|YP_008369924.1|	-	4.6e-07	29.5	0.0	1e-06	28.4	0.0	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_27	PF13514.6	gi|529043705|ref|YP_008369924.1|	-	0.00055	19.6	0.1	0.003	17.2	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
ABC_tran	PF00005.27	gi|529043705|ref|YP_008369924.1|	-	0.00062	20.3	0.9	0.0025	18.3	0.1	2.5	2	1	0	2	2	2	1	ABC	transporter
DUF2813	PF11398.8	gi|529043705|ref|YP_008369924.1|	-	0.00078	18.8	1.4	0.0011	18.3	0.0	1.9	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF2813)
Dynamin_N	PF00350.23	gi|529043705|ref|YP_008369924.1|	-	0.017	15.2	1.1	0.13	12.3	0.1	2.9	3	1	0	3	3	3	0	Dynamin	family
G-alpha	PF00503.20	gi|529043705|ref|YP_008369924.1|	-	0.083	12.0	0.7	1.3	8.1	0.7	2.7	1	1	0	1	1	1	0	G-protein	alpha	subunit
VipB	PF05943.12	gi|529043705|ref|YP_008369924.1|	-	0.11	11.3	0.6	0.17	10.6	0.6	1.2	1	0	0	1	1	1	0	Type	VI	secretion	protein,	EvpB/VC_A0108,	tail	sheath
AAA_5	PF07728.14	gi|529043705|ref|YP_008369924.1|	-	0.12	12.3	0.1	0.51	10.3	0.0	2.1	2	0	0	2	2	1	0	AAA	domain	(dynein-related	subfamily)
DUF4047	PF13256.6	gi|529043705|ref|YP_008369924.1|	-	0.13	12.5	5.9	0.11	12.7	0.8	2.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4047)
T3SSipB	PF16535.5	gi|529043705|ref|YP_008369924.1|	-	0.4	11.1	9.6	0.14	12.6	0.5	3.7	4	0	0	4	4	4	0	Type	III	cell	invasion	protein	SipB
XhlA	PF10779.9	gi|529043705|ref|YP_008369924.1|	-	1.2	9.4	4.8	4.6	7.5	0.3	3.3	2	0	0	2	2	2	0	Haemolysin	XhlA
AAA_16	PF13191.6	gi|529043705|ref|YP_008369924.1|	-	1.4	9.3	13.3	0.33	11.3	1.3	4.4	4	1	0	4	4	4	0	AAA	ATPase	domain
PspB	PF06667.12	gi|529043706|ref|YP_008369925.1|	-	0.27	11.3	1.2	6.3	6.9	0.6	3.0	3	0	0	3	3	3	0	Phage	shock	protein	B
FlgN	PF05130.12	gi|529043706|ref|YP_008369925.1|	-	0.54	10.7	2.0	3.1	8.3	0.5	2.5	3	0	0	3	3	3	0	FlgN	protein
DUF848	PF05852.11	gi|529043706|ref|YP_008369925.1|	-	1	9.5	14.2	0.68	10.0	2.5	3.3	3	1	1	4	4	4	0	Gammaherpesvirus	protein	of	unknown	function	(DUF848)
DDE_Tnp_IS66	PF03050.14	gi|529043707|ref|YP_008369926.1|	-	1.3e-49	169.2	0.2	1.3e-49	169.2	0.2	1.5	2	0	0	2	2	2	1	Transposase	IS66	family
zf-IS66	PF13005.7	gi|529043707|ref|YP_008369926.1|	-	2.6e-06	27.7	5.5	2.6e-06	27.7	5.5	2.2	2	0	0	2	2	2	1	zinc-finger	binding	domain	of	transposase	IS66
PKcGMP_CC	PF16808.5	gi|529043707|ref|YP_008369926.1|	-	0.00053	19.8	11.2	0.0015	18.3	11.2	1.8	1	0	0	1	1	1	1	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
CCDC-167	PF15188.6	gi|529043707|ref|YP_008369926.1|	-	0.0073	16.6	0.8	0.022	15.1	0.8	1.7	1	0	0	1	1	1	1	Coiled-coil	domain-containing	protein	167
ERM	PF00769.19	gi|529043707|ref|YP_008369926.1|	-	0.01	15.7	4.8	0.022	14.6	4.1	1.9	2	0	0	2	2	2	0	Ezrin/radixin/moesin	family
SPATA24	PF15175.6	gi|529043707|ref|YP_008369926.1|	-	0.013	15.4	0.5	0.026	14.4	0.5	1.4	1	0	0	1	1	1	0	Spermatogenesis-associated	protein	24
DZR	PF12773.7	gi|529043707|ref|YP_008369926.1|	-	0.052	13.6	2.6	0.12	12.4	2.6	1.6	1	0	0	1	1	1	0	Double	zinc	ribbon
SlyX	PF04102.12	gi|529043707|ref|YP_008369926.1|	-	0.054	14.1	2.0	0.19	12.4	2.0	2.0	1	0	0	1	1	1	0	SlyX
Med4	PF10018.9	gi|529043707|ref|YP_008369926.1|	-	0.074	12.7	0.7	0.15	11.8	0.7	1.5	1	0	0	1	1	1	0	Vitamin-D-receptor	interacting	Mediator	subunit	4
HSBP1	PF06825.12	gi|529043707|ref|YP_008369926.1|	-	0.092	12.6	5.3	0.15	12.0	1.5	2.3	1	1	1	2	2	2	0	Heat	shock	factor	binding	protein	1
FTA4	PF13093.6	gi|529043707|ref|YP_008369926.1|	-	0.13	12.1	2.9	0.5	10.2	0.2	2.4	2	1	0	2	2	2	0	Kinetochore	complex	Fta4	of	Sim4	subunit,	or	CENP-50
DivIC	PF04977.15	gi|529043707|ref|YP_008369926.1|	-	0.15	11.8	5.0	0.11	12.2	2.2	2.2	2	0	0	2	2	2	0	Septum	formation	initiator
DDE_Tnp_IS240	PF13610.6	gi|529043707|ref|YP_008369926.1|	-	0.17	12.1	1.2	0.28	11.4	0.0	2.0	2	1	0	2	2	2	0	DDE	domain
zf-FPG_IleRS	PF06827.14	gi|529043707|ref|YP_008369926.1|	-	0.24	11.3	5.1	6	6.8	0.3	3.2	3	0	0	3	3	3	0	Zinc	finger	found	in	FPG	and	IleRS
Prefoldin_2	PF01920.20	gi|529043707|ref|YP_008369926.1|	-	0.28	11.2	6.0	0.71	9.9	6.0	1.6	1	0	0	1	1	1	0	Prefoldin	subunit
UPF0449	PF15136.6	gi|529043707|ref|YP_008369926.1|	-	0.28	11.7	5.9	2.5	8.6	2.2	2.7	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0449
HOOK	PF05622.12	gi|529043707|ref|YP_008369926.1|	-	0.55	8.3	3.7	0.85	7.7	3.7	1.2	1	0	0	1	1	1	0	HOOK	protein
Zn-ribbon_8	PF09723.10	gi|529043707|ref|YP_008369926.1|	-	0.85	9.8	5.5	14	5.9	0.8	2.6	2	0	0	2	2	2	0	Zinc	ribbon	domain
YhfH	PF14149.6	gi|529043707|ref|YP_008369926.1|	-	1.6	8.8	4.9	1.3	9.1	1.0	2.3	2	0	0	2	2	2	0	YhfH-like	protein
ABC_tran_CTD	PF16326.5	gi|529043707|ref|YP_008369926.1|	-	4	7.8	11.7	0.24	11.7	5.3	2.4	3	0	0	3	3	2	0	ABC	transporter	C-terminal	domain
DHHC	PF01529.20	gi|529043709|ref|YP_008369928.1|	-	0.11	12.6	2.6	0.12	12.5	2.6	1.0	1	0	0	1	1	1	0	DHHC	palmitoyltransferase
DUF4538	PF15061.6	gi|529043709|ref|YP_008369928.1|	-	0.48	10.2	0.2	0.48	10.2	0.2	1.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4538)
Apolipoprotein	PF01442.18	gi|529043710|ref|YP_008369929.1|	-	0.0012	18.7	2.4	0.0029	17.5	2.4	1.5	1	0	0	1	1	1	1	Apolipoprotein	A1/A4/E	domain
ISG65-75	PF11727.8	gi|529043710|ref|YP_008369929.1|	-	0.045	13.0	1.1	0.083	12.1	1.1	1.4	1	0	0	1	1	1	0	Invariant	surface	glycoprotein
YtxH	PF12732.7	gi|529043710|ref|YP_008369929.1|	-	2.4	8.8	8.0	43	4.7	4.9	3.7	2	1	0	2	2	2	0	YtxH-like	protein
HisKA_3	PF07730.13	gi|529043710|ref|YP_008369929.1|	-	5.7	7.5	6.5	25	5.5	0.1	3.0	3	1	1	4	4	4	0	Histidine	kinase
NTP_transf_5	PF14907.6	gi|529043711|ref|YP_008369930.1|	-	0.006	16.2	1.7	0.024	14.3	1.7	2.0	1	1	0	1	1	1	1	Uncharacterised	nucleotidyltransferase
Glyoxalase	PF00903.25	gi|529043711|ref|YP_008369930.1|	-	0.0077	16.4	0.3	0.22	11.7	0.0	2.5	2	1	0	2	2	2	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
TrmB	PF01978.19	gi|529043712|ref|YP_008369931.1|	-	1.6e-15	56.7	0.4	2.7e-08	33.6	0.0	2.6	2	0	0	2	2	2	2	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|529043712|ref|YP_008369931.1|	-	2e-15	56.4	0.8	4.2e-07	29.8	0.2	2.5	2	0	0	2	2	2	2	MarR	family
MarR	PF01047.22	gi|529043712|ref|YP_008369931.1|	-	5.1e-13	48.7	0.2	6.7e-06	25.9	0.0	2.5	2	0	0	2	2	2	2	MarR	family
Fe_dep_repress	PF01325.19	gi|529043712|ref|YP_008369931.1|	-	5.6e-10	39.3	1.2	0.0013	18.9	0.2	2.8	2	0	0	2	2	2	2	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_24	PF13412.6	gi|529043712|ref|YP_008369931.1|	-	1.2e-09	37.5	0.1	7.2e-05	22.3	0.0	2.6	2	0	0	2	2	2	2	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|529043712|ref|YP_008369931.1|	-	2.4e-09	36.9	1.1	7.2e-06	25.8	0.0	2.4	2	0	0	2	2	2	2	Bacterial	regulatory	protein,	arsR	family
HTH_Crp_2	PF13545.6	gi|529043712|ref|YP_008369931.1|	-	6e-09	35.8	0.3	4.9e-06	26.4	0.0	3.4	3	0	0	3	3	3	1	Crp-like	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|529043712|ref|YP_008369931.1|	-	8.7e-09	35.1	7.6	4.4e-08	32.8	0.2	3.1	3	0	0	3	3	3	1	IclR	helix-turn-helix	domain
Rrf2	PF02082.20	gi|529043712|ref|YP_008369931.1|	-	1.4e-08	35.0	0.4	0.00066	20.0	0.0	2.5	2	0	0	2	2	2	2	Transcriptional	regulator
HTH_11	PF08279.12	gi|529043712|ref|YP_008369931.1|	-	4e-08	33.1	0.1	5.4e-06	26.3	0.0	2.7	2	0	0	2	2	2	1	HTH	domain
HTH_20	PF12840.7	gi|529043712|ref|YP_008369931.1|	-	4.6e-07	29.8	0.9	0.0032	17.5	0.0	2.4	2	0	0	2	2	2	2	Helix-turn-helix	domain
GntR	PF00392.21	gi|529043712|ref|YP_008369931.1|	-	8.9e-07	28.5	0.1	0.0022	17.6	0.0	3.3	3	0	0	3	3	3	1	Bacterial	regulatory	proteins,	gntR	family
HTH_27	PF13463.6	gi|529043712|ref|YP_008369931.1|	-	1.7e-06	28.4	0.5	0.03	14.8	0.1	2.6	2	0	0	2	2	2	2	Winged	helix	DNA-binding	domain
HTH_29	PF13551.6	gi|529043712|ref|YP_008369931.1|	-	9.8e-05	22.3	0.1	0.34	10.9	0.0	2.6	2	0	0	2	2	2	2	Winged	helix-turn	helix
Penicillinase_R	PF03965.16	gi|529043712|ref|YP_008369931.1|	-	0.00038	20.8	0.1	0.33	11.3	0.0	2.9	3	1	0	3	3	2	1	Penicillinase	repressor
HTH_23	PF13384.6	gi|529043712|ref|YP_008369931.1|	-	0.00048	19.8	0.0	0.28	11.0	0.0	2.9	2	0	0	2	2	2	1	Homeodomain-like	domain
DUF4423	PF14394.6	gi|529043712|ref|YP_008369931.1|	-	0.00062	19.5	0.1	0.31	10.7	0.0	2.4	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4423)
HTH_10	PF04967.12	gi|529043712|ref|YP_008369931.1|	-	0.00072	19.3	0.0	0.19	11.5	0.0	3.3	3	0	0	3	3	3	1	HTH	DNA	binding	domain
HTH_AsnC-type	PF13404.6	gi|529043712|ref|YP_008369931.1|	-	0.0012	18.7	1.0	0.0048	16.7	0.1	2.5	3	0	0	3	3	2	1	AsnC-type	helix-turn-helix	domain
HTH_28	PF13518.6	gi|529043712|ref|YP_008369931.1|	-	0.0021	18.1	0.0	0.92	9.7	0.0	2.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_1	PF00126.27	gi|529043712|ref|YP_008369931.1|	-	0.0022	17.9	0.5	2.7	8.0	0.1	2.6	2	0	0	2	2	2	2	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
PaaX	PF07848.12	gi|529043712|ref|YP_008369931.1|	-	0.0041	17.3	0.2	2.2	8.6	0.0	2.4	2	0	0	2	2	2	1	PaaX-like	protein
HTH_45	PF14947.6	gi|529043712|ref|YP_008369931.1|	-	0.0047	16.9	0.0	0.03	14.3	0.0	2.2	2	0	0	2	2	2	1	Winged	helix-turn-helix
HTH_36	PF13730.6	gi|529043712|ref|YP_008369931.1|	-	0.0057	16.6	0.0	0.015	15.3	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
z-alpha	PF02295.17	gi|529043712|ref|YP_008369931.1|	-	0.0059	16.6	0.0	0.032	14.3	0.0	2.2	2	0	0	2	2	2	1	Adenosine	deaminase	z-alpha	domain
HTH_38	PF13936.6	gi|529043712|ref|YP_008369931.1|	-	0.0064	16.2	0.1	0.36	10.6	0.0	3.1	3	0	0	3	3	2	1	Helix-turn-helix	domain
LexA_DNA_bind	PF01726.16	gi|529043712|ref|YP_008369931.1|	-	0.0067	16.2	0.0	0.14	12.0	0.0	2.5	2	0	0	2	2	2	1	LexA	DNA	binding	domain
Phage_rep_O	PF04492.13	gi|529043712|ref|YP_008369931.1|	-	0.0096	16.5	0.0	0.082	13.5	0.0	2.3	2	0	0	2	2	2	1	Bacteriophage	replication	protein	O
HTH_17	PF12728.7	gi|529043712|ref|YP_008369931.1|	-	0.0099	16.1	0.7	6	7.1	0.0	3.4	4	0	0	4	4	2	0	Helix-turn-helix	domain
FtsK_gamma	PF09397.10	gi|529043712|ref|YP_008369931.1|	-	0.011	15.5	0.1	0.054	13.3	0.1	2.1	2	0	0	2	2	2	0	Ftsk	gamma	domain
DUF2250	PF10007.9	gi|529043712|ref|YP_008369931.1|	-	0.015	15.4	0.8	7.9	6.7	0.0	2.7	3	0	0	3	3	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
Sulfolobus_pRN	PF05584.11	gi|529043712|ref|YP_008369931.1|	-	0.015	15.3	0.1	0.069	13.2	0.0	2.1	2	0	0	2	2	2	0	Sulfolobus	plasmid	regulatory	protein
HTH_DeoR	PF08220.12	gi|529043712|ref|YP_008369931.1|	-	0.016	15.0	0.0	0.048	13.4	0.0	1.9	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
SpoIIID	PF12116.8	gi|529043712|ref|YP_008369931.1|	-	0.017	15.2	0.1	0.13	12.3	0.0	2.4	3	0	0	3	3	2	0	Stage	III	sporulation	protein	D
YdaS_antitoxin	PF15943.5	gi|529043712|ref|YP_008369931.1|	-	0.019	14.8	0.1	5.2	7.0	0.0	3.1	3	0	0	3	3	3	0	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
HTH_CodY	PF08222.11	gi|529043712|ref|YP_008369931.1|	-	0.043	13.4	0.0	0.18	11.4	0.0	1.9	2	0	0	2	2	2	0	CodY	helix-turn-helix	domain
HTH_7	PF02796.15	gi|529043712|ref|YP_008369931.1|	-	0.072	13.2	0.0	0.18	11.9	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	resolvase
RepL	PF05732.11	gi|529043712|ref|YP_008369931.1|	-	0.093	12.2	0.0	0.24	10.8	0.0	1.8	1	1	0	1	1	1	0	Firmicute	plasmid	replication	protein	(RepL)
RP-C	PF03428.13	gi|529043712|ref|YP_008369931.1|	-	0.13	11.9	0.4	0.65	9.6	0.0	2.3	3	0	0	3	3	3	0	Replication	protein	C	N-terminal	domain
HTH_Tnp_4	PF13613.6	gi|529043712|ref|YP_008369931.1|	-	0.13	12.0	0.5	0.69	9.7	0.1	2.3	2	0	0	2	2	2	0	Helix-turn-helix	of	DDE	superfamily	endonuclease
DUF903	PF06004.12	gi|529043712|ref|YP_008369931.1|	-	0.16	11.9	0.1	1.7	8.6	0.0	2.2	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF903)
HTH_41	PF14502.6	gi|529043712|ref|YP_008369931.1|	-	0.16	11.7	0.1	8.8	6.1	0.0	2.4	2	0	0	2	2	2	0	Helix-turn-helix	domain
FaeA	PF04703.12	gi|529043712|ref|YP_008369931.1|	-	0.31	11.4	3.3	0.38	11.2	0.1	2.5	2	0	0	2	2	2	0	FaeA-like	protein
PaaB	PF06243.11	gi|529043713|ref|YP_008369932.1|	-	0.046	13.9	0.0	0.1	12.9	0.0	1.5	1	0	0	1	1	1	0	Phenylacetic	acid	degradation	B
KfrA_N	PF11740.8	gi|529043714|ref|YP_008369933.1|	-	0.011	16.4	6.6	2.6	8.7	1.2	4.2	3	0	0	3	3	3	0	Plasmid	replication	region	DNA-binding	N-term
AAA_22	PF13401.6	gi|529043714|ref|YP_008369933.1|	-	0.023	15.0	0.0	7.2	6.9	0.0	3.9	3	0	0	3	3	3	0	AAA	domain
AFG1_ATPase	PF03969.16	gi|529043714|ref|YP_008369933.1|	-	0.11	11.4	0.0	0.28	10.0	0.0	1.6	1	0	0	1	1	1	0	AFG1-like	ATPase
DUF1415	PF07209.12	gi|529043714|ref|YP_008369933.1|	-	0.11	12.2	0.0	0.52	10.0	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1415)
HEPN	PF05168.14	gi|529043714|ref|YP_008369933.1|	-	0.42	10.8	1.9	0.98	9.6	0.1	2.7	3	0	0	3	3	3	0	HEPN	domain
DUF1788	PF08747.11	gi|529043715|ref|YP_008369934.1|	-	1.2e-14	54.3	0.0	1.6e-14	53.9	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1788)
EIIA-man	PF03610.16	gi|529043715|ref|YP_008369934.1|	-	0.0015	18.7	0.0	0.0024	18.1	0.0	1.3	1	0	0	1	1	1	1	PTS	system	fructose	IIA	component
TPR_MLP1_2	PF07926.12	gi|529043716|ref|YP_008369935.1|	-	0.058	13.4	2.0	0.24	11.5	2.0	2.1	1	0	0	1	1	1	0	TPR/MLP1/MLP2-like	protein
ABC_tran	PF00005.27	gi|529043716|ref|YP_008369935.1|	-	0.1	13.1	0.0	0.38	11.3	0.0	2.0	1	0	0	1	1	1	0	ABC	transporter
DUF2791	PF10923.8	gi|529043716|ref|YP_008369935.1|	-	0.4	9.5	1.5	13	4.5	0.0	2.3	2	0	0	2	2	2	0	P-loop	Domain	of	unknown	function	(DUF2791)
HWE_HK	PF07536.14	gi|529043716|ref|YP_008369935.1|	-	1.4	9.7	3.8	8.3	7.2	0.4	3.1	3	0	0	3	3	3	0	HWE	histidine	kinase
#
# Program:         hmmscan
# Version:         3.2.1 (June 2018)
# Pipeline mode:   SCAN
# Query file:      /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halorhabdus_tiamatea_SARL4B_uid214082/NC_021913.faa
# Target file:     /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm
# Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halorhabdus_tiamatea_SARL4B_uid214082/NC_021913.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halorhabdus_tiamatea_SARL4B_uid214082/NC_021913.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halorhabdus_tiamatea_SARL4B_uid214082/NC_021913.faa 
# Current dir:     /oak/stanford/groups/akundaje/marinovg/genomes
# Date:            Mon Mar 25 12:43:10 2019
# [ok]