# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Penicillinase_R PF03965.11 gi|529043438|ref|YP_008369657.1| - 0.00066 19.7 0.0 0.001 19.1 0.0 1.3 1 0 0 1 1 1 1 Penicillinase repressor Ppx-GppA PF02541.11 gi|529043439|ref|YP_008369658.1| - 0.1 11.7 0.0 0.11 11.6 0.0 1.0 1 0 0 1 1 1 0 Ppx/GppA phosphatase family HD_3 PF13023.1 gi|529043439|ref|YP_008369658.1| - 0.11 12.2 0.1 0.11 12.2 0.0 1.1 1 0 0 1 1 1 0 HD domain HTH_23 PF13384.1 gi|529043440|ref|YP_008369659.1| - 0.063 12.9 0.6 1.9 8.2 0.0 2.8 3 0 0 3 3 3 0 Homeodomain-like domain Mrr_cat PF04471.7 gi|529043443|ref|YP_008369662.1| - 2.6e-05 23.9 0.0 5.5e-05 22.9 0.0 1.6 1 0 0 1 1 1 1 Restriction endonuclease FdhD-NarQ PF02634.10 gi|529043443|ref|YP_008369662.1| - 0.04 13.3 0.0 0.096 12.1 0.0 1.6 2 0 0 2 2 2 0 FdhD/NarQ family ADIP PF11559.3 gi|529043444|ref|YP_008369663.1| - 0.4 10.5 18.2 0.69 9.8 12.6 1.3 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding DUF342 PF03961.8 gi|529043444|ref|YP_008369663.1| - 0.54 8.6 6.6 0.8 8.0 4.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) SNF2_N PF00176.18 gi|529043445|ref|YP_008369664.1| - 2.2e-35 121.9 0.0 3.7e-35 121.1 0.0 1.4 1 1 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 gi|529043445|ref|YP_008369664.1| - 2.4e-15 56.1 0.0 8.1e-15 54.4 0.0 2.0 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|529043445|ref|YP_008369664.1| - 3.5e-05 23.7 0.0 0.00012 22.0 0.0 1.9 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C_2 PF13307.1 gi|529043445|ref|YP_008369664.1| - 0.0052 16.7 0.4 0.11 12.4 0.0 2.3 1 1 0 2 2 2 1 Helicase C-terminal domain DUF745 PF05335.8 gi|529043445|ref|YP_008369664.1| - 0.59 9.6 3.8 0.51 9.8 0.0 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF745) Ssu72 PF04722.8 gi|529043445|ref|YP_008369664.1| - 1.7 7.8 8.1 1.1 8.5 0.8 3.1 2 1 0 3 3 3 0 Ssu72-like protein ResIII PF04851.10 gi|529043446|ref|YP_008369665.1| - 3.7e-16 59.4 0.0 8.4e-16 58.3 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|529043446|ref|YP_008369665.1| - 1.9e-08 33.9 0.0 3.6e-08 33.0 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|529043446|ref|YP_008369665.1| - 1.4e-05 24.8 0.0 3.9e-05 23.4 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain SNF2_N PF00176.18 gi|529043446|ref|YP_008369665.1| - 1.8e-05 23.7 0.0 5.9e-05 22.0 0.0 1.7 1 1 1 2 2 2 1 SNF2 family N-terminal domain DUF2075 PF09848.4 gi|529043446|ref|YP_008369665.1| - 0.058 12.3 0.0 0.11 11.4 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) VWA_2 PF13519.1 gi|529043447|ref|YP_008369666.1| - 2.7e-21 76.4 2.4 5.5e-21 75.4 1.6 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.23 gi|529043447|ref|YP_008369666.1| - 5.3e-14 52.3 0.5 1.3e-13 51.0 0.3 1.6 1 1 0 1 1 1 1 von Willebrand factor type A domain vWA-TerF-like PF10138.4 gi|529043447|ref|YP_008369666.1| - 2.2e-07 30.9 1.6 1.1e-05 25.3 1.1 2.2 1 1 0 1 1 1 1 vWA found in TerF C terminus VWA_3 PF13768.1 gi|529043447|ref|YP_008369666.1| - 6.1e-05 22.7 0.7 0.00046 19.9 0.0 2.3 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|529043447|ref|YP_008369666.1| - 0.0088 15.2 1.8 0.12 11.4 0.2 2.3 1 1 1 2 2 2 1 VWA domain containing CoxE-like protein DUF1610 PF07754.6 gi|529043447|ref|YP_008369666.1| - 0.19 11.8 0.1 0.56 10.3 0.1 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF1610) Zn-ribbon_8 PF09723.5 gi|529043447|ref|YP_008369666.1| - 0.62 10.0 2.4 5.2 7.1 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain UvrD-helicase PF00580.16 gi|529043448|ref|YP_008369667.1| - 1.7e-44 152.4 0.9 1.7e-44 152.4 0.6 2.8 2 1 0 2 2 2 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|529043448|ref|YP_008369667.1| - 1.8e-15 57.2 2.5 5.3e-10 39.2 0.0 4.2 4 1 1 5 5 5 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.1 gi|529043448|ref|YP_008369667.1| - 5.7e-09 35.6 0.1 1.3e-08 34.4 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_30 PF13604.1 gi|529043448|ref|YP_008369667.1| - 2.2e-06 27.3 0.0 0.00014 21.4 0.0 2.8 2 0 0 2 2 2 1 AAA domain UvrD_C_2 PF13538.1 gi|529043448|ref|YP_008369667.1| - 6.1e-06 26.3 0.0 4.5e-05 23.5 0.0 2.6 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_12 PF13087.1 gi|529043448|ref|YP_008369667.1| - 9.6e-06 25.1 0.0 0.00014 21.3 0.0 2.6 2 0 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.13 gi|529043448|ref|YP_008369667.1| - 0.0091 15.5 0.1 1.3 8.4 0.0 3.8 2 1 0 2 2 2 1 Viral (Superfamily 1) RNA helicase ResIII PF04851.10 gi|529043448|ref|YP_008369667.1| - 0.023 14.5 0.2 0.11 12.3 0.0 2.2 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit DUF2524 PF10732.4 gi|529043448|ref|YP_008369667.1| - 0.034 14.2 4.3 0.59 10.2 0.1 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF2524) ADP_ribosyl_GH PF03747.9 gi|529043449|ref|YP_008369668.1| - 6.4e-55 186.9 0.7 7.3e-55 186.7 0.5 1.0 1 0 0 1 1 1 1 ADP-ribosylglycohydrolase Rick_17kDa_Anti PF05433.10 gi|529043449|ref|YP_008369668.1| - 0.033 13.8 2.0 0.065 12.9 1.4 1.5 1 0 0 1 1 1 0 Glycine zipper 2TM domain DUF457 PF04307.9 gi|529043450|ref|YP_008369669.1| - 6e-18 64.6 8.6 8.1e-18 64.2 6.0 1.2 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) ABC2_membrane_4 PF12730.2 gi|529043450|ref|YP_008369669.1| - 0.052 12.7 6.7 0.072 12.2 4.7 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF4225 PF13988.1 gi|529043450|ref|YP_008369669.1| - 0.97 8.8 6.8 12 5.3 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF4225) OrfB_IS605 PF01385.14 gi|529043451|ref|YP_008369670.1| - 3.6e-48 163.9 0.0 4.5e-48 163.6 0.0 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|529043451|ref|YP_008369670.1| - 2.4e-20 71.9 4.2 2.4e-20 71.9 1.0 2.1 2 0 0 2 2 2 1 Putative transposase DNA-binding domain DUF3791 PF12668.2 gi|529043451|ref|YP_008369670.1| - 0.13 11.8 0.0 0.3 10.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3791) A2L_zn_ribbon PF08792.5 gi|529043451|ref|YP_008369670.1| - 0.22 11.0 6.4 0.049 13.1 2.0 1.8 2 0 0 2 2 2 0 A2L zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|529043451|ref|YP_008369670.1| - 0.26 10.6 8.8 0.027 13.7 2.3 2.3 3 0 0 3 3 3 0 TFIIB zinc-binding RRN7 PF11781.3 gi|529043451|ref|YP_008369670.1| - 5 6.7 9.8 0.44 10.0 3.5 1.8 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 HTH_29 PF13551.1 gi|529043452|ref|YP_008369671.1| - 6.4e-14 52.0 0.0 3.9e-13 49.5 0.0 2.2 1 1 1 2 2 2 1 Winged helix-turn helix DDE_3 PF13358.1 gi|529043452|ref|YP_008369671.1| - 7.4e-12 45.2 0.1 2.9e-11 43.3 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_32 PF13565.1 gi|529043452|ref|YP_008369671.1| - 8.6e-10 39.2 1.5 1.1e-08 35.7 0.0 2.8 3 0 0 3 3 2 1 Homeodomain-like domain HTH_23 PF13384.1 gi|529043452|ref|YP_008369671.1| - 2.4e-08 33.3 0.2 2.6e-07 30.0 0.0 2.3 2 0 0 2 2 2 1 Homeodomain-like domain HTH_33 PF13592.1 gi|529043452|ref|YP_008369671.1| - 5.7e-08 32.1 0.0 5e-07 29.1 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn helix DDE_1 PF03184.14 gi|529043452|ref|YP_008369671.1| - 0.00013 21.1 0.0 0.00021 20.5 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.1 gi|529043452|ref|YP_008369671.1| - 0.00013 21.8 0.0 0.00034 20.5 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain rve PF00665.21 gi|529043452|ref|YP_008369671.1| - 0.0002 21.4 0.0 0.00039 20.5 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_7 PF02796.10 gi|529043452|ref|YP_008369671.1| - 0.0042 16.9 0.2 0.013 15.3 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_38 PF13936.1 gi|529043452|ref|YP_008369671.1| - 0.033 13.7 0.4 4.3 6.9 0.1 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_31 PF13560.1 gi|529043452|ref|YP_008369671.1| - 0.1 12.7 0.1 0.35 11.0 0.1 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain Gluconate_2-dh3 PF13618.1 gi|529043452|ref|YP_008369671.1| - 0.33 11.1 3.1 38 4.4 0.0 3.2 3 0 0 3 3 3 0 Gluconate 2-dehydrogenase subunit 3 DUF3665 PF12427.3 gi|529043452|ref|YP_008369671.1| - 3.6 7.0 5.9 0.52 9.7 0.1 2.6 2 1 0 1 1 1 0 Branched-chain amino acid aminotransferase FaeA PF04703.7 gi|529043458|ref|YP_008369677.1| - 0.0081 16.3 0.0 0.016 15.3 0.0 1.5 1 0 0 1 1 1 1 FaeA-like protein TrmB PF01978.14 gi|529043458|ref|YP_008369677.1| - 0.011 15.4 0.0 0.019 14.6 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|529043458|ref|YP_008369677.1| - 0.14 11.7 0.0 0.3 10.7 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF3006 PF11213.3 gi|529043460|ref|YP_008369679.1| - 6.6e-13 48.2 1.1 7.8e-13 47.9 0.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3006) DUF1482 PF07358.6 gi|529043460|ref|YP_008369679.1| - 0.081 12.5 0.0 0.19 11.3 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1482) LTD PF00932.14 gi|529043461|ref|YP_008369680.1| - 5.4e-21 74.8 2.3 5.4e-21 74.8 1.6 2.7 3 0 0 3 3 3 1 Lamin Tail Domain Lactamase_B PF00753.22 gi|529043461|ref|YP_008369680.1| - 1e-13 51.3 1.7 1e-13 51.3 1.2 1.8 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|529043461|ref|YP_008369680.1| - 0.033 13.7 0.0 0.051 13.1 0.0 1.4 1 0 0 1 1 1 0 Beta-lactamase superfamily domain DUF4353 PF14262.1 gi|529043461|ref|YP_008369680.1| - 0.067 12.3 4.7 0.036 13.2 1.5 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4353) Takusan PF04822.8 gi|529043462|ref|YP_008369681.1| - 0.1 12.3 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 Takusan UPF0236 PF06782.6 gi|529043464|ref|YP_008369683.1| - 4.1e-07 28.7 0.1 3.2e-05 22.5 0.0 2.2 2 0 0 2 2 2 2 Uncharacterised protein family (UPF0236) Transposase_mut PF00872.13 gi|529043464|ref|YP_008369683.1| - 9.9e-05 21.0 1.5 0.024 13.2 0.1 2.5 2 1 0 2 2 2 2 Transposase, Mutator family UPF0236 PF06782.6 gi|529043466|ref|YP_008369685.1| - 4.1e-07 28.7 0.1 3.2e-05 22.5 0.0 2.2 2 0 0 2 2 2 2 Uncharacterised protein family (UPF0236) Transposase_mut PF00872.13 gi|529043466|ref|YP_008369685.1| - 9.9e-05 21.0 1.5 0.024 13.2 0.1 2.5 2 1 0 2 2 2 2 Transposase, Mutator family HTH_20 PF12840.2 gi|529043467|ref|YP_008369686.1| - 2e-11 43.5 0.2 3.1e-11 42.8 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|529043467|ref|YP_008369686.1| - 7.2e-06 25.5 0.1 1.4e-05 24.6 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|529043467|ref|YP_008369686.1| - 1.2e-05 25.5 0.0 1.9e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|529043467|ref|YP_008369686.1| - 3.6e-05 23.3 0.0 5.7e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|529043467|ref|YP_008369686.1| - 4.5e-05 23.3 0.0 6.6e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.12 gi|529043467|ref|YP_008369686.1| - 0.00012 21.5 0.0 0.00015 21.2 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_24 PF13412.1 gi|529043467|ref|YP_008369686.1| - 0.00033 19.9 0.0 0.00052 19.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|529043467|ref|YP_008369686.1| - 0.00058 19.5 0.0 0.0011 18.6 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|529043467|ref|YP_008369686.1| - 0.0031 17.1 0.0 0.005 16.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family B-block_TFIIIC PF04182.7 gi|529043467|ref|YP_008369686.1| - 0.01 15.6 0.0 0.017 14.9 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC DUF2513 PF10711.4 gi|529043467|ref|YP_008369686.1| - 0.063 13.3 0.0 0.087 12.9 0.0 1.2 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) PIN PF01850.16 gi|529043468|ref|YP_008369687.1| - 2.1e-09 37.7 0.3 2.4e-09 37.5 0.2 1.0 1 0 0 1 1 1 1 PIN domain Pro-kuma_activ PF09286.6 gi|529043468|ref|YP_008369687.1| - 0.077 13.0 0.0 0.093 12.7 0.0 1.1 1 0 0 1 1 1 0 Pro-kumamolisin, activation domain DUF2384 PF09722.5 gi|529043468|ref|YP_008369687.1| - 0.087 12.7 0.1 1.5 8.7 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2384) Antitoxin-MazE PF04014.13 gi|529043469|ref|YP_008369688.1| - 2.1e-06 27.2 0.1 2.8e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE Elf-1_N PF12310.3 gi|529043469|ref|YP_008369688.1| - 0.015 15.2 0.0 0.018 14.9 0.0 1.1 1 0 0 1 1 1 0 Transcription factor protein N terminal HTH_24 PF13412.1 gi|529043470|ref|YP_008369689.1| - 0.0031 16.8 0.1 0.0047 16.2 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|529043470|ref|YP_008369689.1| - 0.02 14.6 0.1 0.058 13.2 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|529043470|ref|YP_008369689.1| - 0.14 11.8 0.0 0.23 11.1 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family zf-TFIIB PF13453.1 gi|529043472|ref|YP_008369691.1| - 0.0005 19.2 0.6 0.011 14.9 0.0 2.1 2 0 0 2 2 2 1 Transcription factor zinc-finger DUF1451 PF07295.6 gi|529043472|ref|YP_008369691.1| - 0.00069 19.4 0.8 0.00076 19.2 0.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1451) PLDc_N PF13396.1 gi|529043472|ref|YP_008369691.1| - 0.00089 18.8 0.4 0.0012 18.4 0.3 1.2 1 0 0 1 1 1 1 Phospholipase_D-nuclease N-terminal Zn-ribbon_8 PF09723.5 gi|529043472|ref|YP_008369691.1| - 0.05 13.5 2.2 0.099 12.6 1.5 1.5 1 1 0 1 1 1 0 Zinc ribbon domain DZR PF12773.2 gi|529043472|ref|YP_008369691.1| - 0.051 13.3 0.8 0.071 12.9 0.5 1.3 1 0 0 1 1 1 0 Double zinc ribbon FYVE PF01363.16 gi|529043472|ref|YP_008369691.1| - 0.078 12.8 0.7 0.11 12.4 0.5 1.4 1 0 0 1 1 1 0 FYVE zinc finger HypA PF01155.14 gi|529043472|ref|YP_008369691.1| - 0.12 12.0 0.9 0.15 11.7 0.7 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zn_Tnp_IS91 PF14319.1 gi|529043472|ref|YP_008369691.1| - 0.19 11.2 0.9 0.22 11.0 0.7 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain OrfB_Zn_ribbon PF07282.6 gi|529043472|ref|YP_008369691.1| - 0.22 11.2 2.5 0.35 10.5 1.7 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain GATA PF00320.22 gi|529043472|ref|YP_008369691.1| - 0.22 10.8 2.7 0.45 9.9 0.2 2.2 1 1 0 2 2 2 0 GATA zinc finger Prok-RING_2 PF14445.1 gi|529043472|ref|YP_008369691.1| - 0.25 11.3 2.6 7.1 6.6 1.8 2.2 1 1 0 1 1 1 0 Prokaryotic RING finger family 2 zf-RING_3 PF14369.1 gi|529043472|ref|YP_008369691.1| - 0.3 11.1 1.8 0.71 9.9 1.3 1.6 1 1 0 1 1 1 0 zinc-finger Nudix_N_2 PF14803.1 gi|529043472|ref|YP_008369691.1| - 0.43 10.3 4.6 5.7 6.7 0.3 2.3 2 0 0 2 2 2 0 Nudix N-terminal TF_Zn_Ribbon PF08271.7 gi|529043472|ref|YP_008369691.1| - 0.48 9.7 2.9 0.83 9.0 2.0 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding ADK_lid PF05191.9 gi|529043472|ref|YP_008369691.1| - 1.2 8.8 5.1 5.1 6.8 3.6 2.0 1 1 0 1 1 1 0 Adenylate kinase, active site lid zf-C2H2_3 PF13878.1 gi|529043472|ref|YP_008369691.1| - 5.9 6.5 6.6 1.8 8.1 0.3 2.2 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO DZR PF12773.2 gi|529043473|ref|YP_008369692.1| - 0.048 13.4 0.8 0.069 12.9 0.5 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-C2HC_2 PF13913.1 gi|529043473|ref|YP_008369692.1| - 0.081 12.6 1.6 0.081 12.6 1.1 2.2 2 1 0 2 2 2 0 zinc-finger of a C2HC-type zf-ribbon_3 PF13248.1 gi|529043473|ref|YP_008369692.1| - 0.19 11.0 2.6 0.28 10.4 1.8 1.3 1 0 0 1 1 1 0 zinc-ribbon domain RNase_H_2 PF13482.1 gi|529043474|ref|YP_008369693.1| - 9.7e-09 35.2 0.0 1.3e-06 28.2 0.0 2.3 1 1 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo1 PF03104.14 gi|529043474|ref|YP_008369693.1| - 0.0015 17.4 0.0 0.0028 16.5 0.0 1.4 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_B_exo2 PF10108.4 gi|529043474|ref|YP_008369693.1| - 0.0081 15.7 0.0 0.012 15.1 0.0 1.3 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB AAA_22 PF13401.1 gi|529043475|ref|YP_008369694.1| - 8.9e-12 45.2 0.1 2.4e-11 43.8 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|529043475|ref|YP_008369694.1| - 3.7e-11 43.3 0.2 4.2e-10 39.8 0.0 2.5 2 1 0 2 2 2 1 AAA ATPase domain Cdc6_C PF09079.6 gi|529043475|ref|YP_008369694.1| - 3.4e-09 36.2 0.0 8.2e-09 35.0 0.0 1.7 1 0 0 1 1 1 1 CDC6, C terminal AAA PF00004.24 gi|529043475|ref|YP_008369694.1| - 8e-06 26.0 0.0 2.7e-05 24.3 0.0 2.0 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|529043475|ref|YP_008369694.1| - 5.6e-05 22.9 0.0 0.00018 21.3 0.0 1.8 2 0 0 2 2 2 1 Archaeal ATPase NACHT PF05729.7 gi|529043475|ref|YP_008369694.1| - 0.00026 20.6 0.0 0.00046 19.8 0.0 1.4 1 0 0 1 1 1 1 NACHT domain DEAD PF00270.24 gi|529043475|ref|YP_008369694.1| - 0.018 14.5 0.7 0.16 11.4 0.0 2.2 1 1 1 2 2 2 0 DEAD/DEAH box helicase AAA_16 PF13191.1 gi|529043476|ref|YP_008369695.1| - 2.5e-17 63.4 1.8 4.1e-16 59.5 0.1 2.7 2 1 0 2 2 2 1 AAA ATPase domain Cdc6_C PF09079.6 gi|529043476|ref|YP_008369695.1| - 2.6e-14 52.6 0.1 1.2e-13 50.5 0.0 2.2 2 0 0 2 2 2 1 CDC6, C terminal AAA PF00004.24 gi|529043476|ref|YP_008369695.1| - 1.6e-10 41.3 0.0 9.3e-10 38.8 0.0 2.3 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|529043476|ref|YP_008369695.1| - 3.3e-06 27.2 0.0 8e-06 26.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.8 gi|529043476|ref|YP_008369695.1| - 2.1e-05 23.5 0.0 4.2e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Arch_ATPase PF01637.13 gi|529043476|ref|YP_008369695.1| - 5.2e-05 23.0 0.0 0.00017 21.4 0.0 1.9 2 1 0 2 2 2 1 Archaeal ATPase AAA_17 PF13207.1 gi|529043476|ref|YP_008369695.1| - 0.00048 20.9 0.2 0.0023 18.7 0.1 2.3 1 1 0 1 1 1 1 AAA domain Sigma54_activat PF00158.21 gi|529043476|ref|YP_008369695.1| - 0.0022 17.5 0.0 0.0049 16.3 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 interaction domain RNA_helicase PF00910.17 gi|529043476|ref|YP_008369695.1| - 0.0029 17.7 0.1 0.02 15.0 0.0 2.4 3 0 0 3 3 3 1 RNA helicase AAA_18 PF13238.1 gi|529043476|ref|YP_008369695.1| - 0.01 16.1 0.0 0.03 14.6 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|529043476|ref|YP_008369695.1| - 0.012 15.3 0.1 0.074 12.7 0.0 2.3 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.16 gi|529043476|ref|YP_008369695.1| - 0.013 14.6 0.0 0.029 13.5 0.0 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|529043476|ref|YP_008369695.1| - 0.018 14.6 0.0 0.061 12.9 0.0 1.7 1 1 0 1 1 1 0 NACHT domain ABC_tran PF00005.22 gi|529043476|ref|YP_008369695.1| - 0.02 15.2 0.0 0.06 13.6 0.0 1.9 2 1 0 2 2 2 0 ABC transporter AAA_25 PF13481.1 gi|529043476|ref|YP_008369695.1| - 0.024 14.0 1.1 0.11 11.9 0.0 2.5 2 1 0 2 2 2 0 AAA domain Sigma54_activ_2 PF14532.1 gi|529043476|ref|YP_008369695.1| - 0.027 14.4 0.0 0.053 13.5 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain PIF1 PF05970.9 gi|529043476|ref|YP_008369695.1| - 0.028 13.3 0.0 0.044 12.7 0.0 1.4 1 0 0 1 1 1 0 PIF1-like helicase IstB_IS21 PF01695.12 gi|529043476|ref|YP_008369695.1| - 0.038 13.4 0.0 0.099 12.0 0.0 1.7 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_33 PF13671.1 gi|529043476|ref|YP_008369695.1| - 0.058 13.2 0.0 0.27 11.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain DDE_Tnp_IS66 PF03050.9 gi|529043477|ref|YP_008369696.1| - 1e-52 179.0 0.0 1e-52 179.0 0.0 1.6 2 0 0 2 2 2 1 Transposase IS66 family GAS PF13851.1 gi|529043477|ref|YP_008369696.1| - 0.0051 16.0 3.9 0.009 15.2 2.7 1.3 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding Transposase_mut PF00872.13 gi|529043477|ref|YP_008369696.1| - 0.006 15.1 0.0 0.012 14.2 0.0 1.4 1 0 0 1 1 1 1 Transposase, Mutator family TMF_TATA_bd PF12325.3 gi|529043477|ref|YP_008369696.1| - 0.0062 16.2 9.2 0.016 14.9 6.4 1.6 1 0 0 1 1 1 1 TATA element modulatory factor 1 TATA binding bZIP_1 PF00170.16 gi|529043477|ref|YP_008369696.1| - 0.0072 16.2 4.8 0.018 15.0 3.3 1.7 1 0 0 1 1 1 1 bZIP transcription factor CENP-F_leu_zip PF10473.4 gi|529043477|ref|YP_008369696.1| - 0.017 14.9 7.3 0.047 13.5 5.0 1.7 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Shugoshin_N PF07558.6 gi|529043477|ref|YP_008369696.1| - 0.021 14.5 1.3 0.048 13.3 0.9 1.6 1 0 0 1 1 1 0 Shugoshin N-terminal coiled-coil region DASH_Spc34 PF08657.5 gi|529043477|ref|YP_008369696.1| - 0.027 14.1 3.6 0.056 13.0 2.5 1.4 1 0 0 1 1 1 0 DASH complex subunit Spc34 IncA PF04156.9 gi|529043477|ref|YP_008369696.1| - 0.038 13.5 3.7 0.087 12.4 2.6 1.5 1 0 0 1 1 1 0 IncA protein SOUL PF04832.7 gi|529043477|ref|YP_008369696.1| - 0.055 13.0 0.2 0.1 12.1 0.1 1.4 1 0 0 1 1 1 0 SOUL heme-binding protein TBPIP PF07106.8 gi|529043477|ref|YP_008369696.1| - 0.059 12.9 1.9 0.14 11.6 1.3 1.6 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) CBF_beta PF02312.12 gi|529043477|ref|YP_008369696.1| - 0.073 12.6 2.5 0.13 11.8 1.7 1.3 1 0 0 1 1 1 0 Core binding factor beta subunit DUF869 PF05911.6 gi|529043477|ref|YP_008369696.1| - 0.079 11.1 2.8 0.11 10.7 1.9 1.1 1 0 0 1 1 1 0 Plant protein of unknown function (DUF869) MCC-bdg_PDZ PF10506.4 gi|529043477|ref|YP_008369696.1| - 0.081 12.7 3.9 0.19 11.5 2.7 1.7 1 0 0 1 1 1 0 PDZ domain of MCC-2 bdg protein for Usher syndrome DUF2681 PF10883.3 gi|529043477|ref|YP_008369696.1| - 0.11 12.7 1.3 0.34 11.1 0.9 1.8 2 0 0 2 2 1 0 Protein of unknown function (DUF2681) DUF972 PF06156.8 gi|529043477|ref|YP_008369696.1| - 0.12 12.7 3.8 0.11 12.8 1.4 1.7 2 0 0 2 2 1 0 Protein of unknown function (DUF972) DUF3584 PF12128.3 gi|529043477|ref|YP_008369696.1| - 0.17 9.1 3.3 0.24 8.6 2.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) CtIP_N PF10482.4 gi|529043477|ref|YP_008369696.1| - 0.24 11.2 8.5 0.17 11.6 4.2 2.0 2 0 0 2 2 2 0 Tumour-suppressor protein CtIP N-terminal domain V_ATPase_I PF01496.14 gi|529043477|ref|YP_008369696.1| - 0.34 8.6 2.5 0.48 8.2 1.8 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family UPF0547 PF10571.4 gi|529043477|ref|YP_008369696.1| - 0.36 10.5 2.8 0.57 9.9 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Daxx PF03344.10 gi|529043477|ref|YP_008369696.1| - 0.37 9.2 7.2 0.57 8.6 5.0 1.1 1 0 0 1 1 1 0 Daxx Family TMF_DNA_bd PF12329.3 gi|529043477|ref|YP_008369696.1| - 0.53 10.1 8.2 0.24 11.2 2.0 2.2 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding DivIC PF04977.10 gi|529043477|ref|YP_008369696.1| - 0.58 9.6 7.7 0.15 11.5 2.4 2.2 2 0 0 2 2 2 0 Septum formation initiator DDE_Tnp_IS240 PF13610.1 gi|529043477|ref|YP_008369696.1| - 0.59 10.0 2.8 0.44 10.4 0.1 2.2 2 1 0 2 2 2 0 DDE domain APG6 PF04111.7 gi|529043477|ref|YP_008369696.1| - 1.4 7.9 4.5 2.3 7.1 3.1 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 zf-IS66 PF13005.2 gi|529043477|ref|YP_008369696.1| - 4.8 7.2 13.2 0.093 12.7 3.8 2.2 2 0 0 2 2 1 0 zinc-finger binding domain of transposase IS66 bZIP_2 PF07716.10 gi|529043477|ref|YP_008369696.1| - 5.4 6.9 12.9 0.33 10.8 4.6 2.3 2 1 1 3 3 2 0 Basic region leucine zipper BPD_transp_1 PF00528.17 gi|529043478|ref|YP_008369697.1| - 4e-19 68.8 15.8 4.7e-19 68.6 11.0 1.1 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|529043480|ref|YP_008369699.1| - 2.2e-15 57.1 0.0 4.2e-15 56.2 0.0 1.5 1 0 0 1 1 1 1 ABC transporter TOBE PF03459.12 gi|529043480|ref|YP_008369699.1| - 6.7e-10 38.9 0.2 2.8e-07 30.5 0.0 2.5 2 0 0 2 2 2 2 TOBE domain TOBE_2 PF08402.5 gi|529043480|ref|YP_008369699.1| - 3.1e-09 36.6 0.2 8e-08 32.1 0.0 2.6 3 0 0 3 3 3 1 TOBE domain AAA_21 PF13304.1 gi|529043480|ref|YP_008369699.1| - 1.2e-05 25.4 0.1 2e-05 24.7 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|529043480|ref|YP_008369699.1| - 0.031 13.3 0.0 0.042 12.9 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain SbcCD_C PF13558.1 gi|529043480|ref|YP_008369699.1| - 0.061 13.2 0.1 0.51 10.2 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF3971 PF13116.1 gi|529043480|ref|YP_008369699.1| - 0.067 12.5 0.0 0.1 11.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function S1 PF00575.18 gi|529043480|ref|YP_008369699.1| - 0.071 13.2 0.1 1.1 9.4 0.0 2.3 2 0 0 2 2 2 0 S1 RNA binding domain DUF2109 PF09882.4 gi|529043481|ref|YP_008369700.1| - 0.078 12.9 1.7 0.088 12.7 1.2 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2109) CRA PF06589.6 gi|529043481|ref|YP_008369700.1| - 0.18 11.1 0.5 0.2 10.9 0.4 1.1 1 0 0 1 1 1 0 Circumsporozoite-related antigen (CRA) DUF3767 PF12597.3 gi|529043481|ref|YP_008369700.1| - 1.4 8.5 3.5 1.6 8.4 2.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3767) COX1 PF00115.15 gi|529043482|ref|YP_008369701.1| - 0.0024 16.5 40.6 0.0051 15.4 6.8 4.1 2 1 0 3 3 3 3 Cytochrome C and Quinol oxidase polypeptide I DUF2249 PF10006.4 gi|529043484|ref|YP_008369703.1| - 1.3e-25 88.7 1.0 1.4e-25 88.6 0.7 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) TusA PF01206.12 gi|529043484|ref|YP_008369703.1| - 0.011 15.3 0.0 0.012 15.2 0.0 1.3 1 1 0 1 1 1 0 Sulfurtransferase TusA MOSC PF03473.12 gi|529043485|ref|YP_008369704.1| - 5.2e-20 71.2 0.0 7.8e-20 70.7 0.0 1.3 1 0 0 1 1 1 1 MOSC domain MOSC_N PF03476.11 gi|529043485|ref|YP_008369704.1| - 1.1e-14 54.1 0.0 2.4e-14 53.0 0.0 1.6 1 0 0 1 1 1 1 MOSC N-terminal beta barrel domain CMD PF02627.15 gi|529043486|ref|YP_008369705.1| - 2.5e-09 36.8 0.0 3.2e-09 36.4 0.0 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family DDE_Tnp_IS66 PF03050.9 gi|529043488|ref|YP_008369707.1| - 1e-52 179.0 0.0 1e-52 179.0 0.0 1.6 2 0 0 2 2 2 1 Transposase IS66 family GAS PF13851.1 gi|529043488|ref|YP_008369707.1| - 0.0051 16.0 3.9 0.009 15.2 2.7 1.3 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding Transposase_mut PF00872.13 gi|529043488|ref|YP_008369707.1| - 0.006 15.1 0.0 0.012 14.2 0.0 1.4 1 0 0 1 1 1 1 Transposase, Mutator family TMF_TATA_bd PF12325.3 gi|529043488|ref|YP_008369707.1| - 0.0062 16.2 9.2 0.016 14.9 6.4 1.6 1 0 0 1 1 1 1 TATA element modulatory factor 1 TATA binding bZIP_1 PF00170.16 gi|529043488|ref|YP_008369707.1| - 0.0072 16.2 4.8 0.018 15.0 3.3 1.7 1 0 0 1 1 1 1 bZIP transcription factor CENP-F_leu_zip PF10473.4 gi|529043488|ref|YP_008369707.1| - 0.017 14.9 7.3 0.047 13.5 5.0 1.7 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Shugoshin_N PF07558.6 gi|529043488|ref|YP_008369707.1| - 0.021 14.5 1.3 0.048 13.3 0.9 1.6 1 0 0 1 1 1 0 Shugoshin N-terminal coiled-coil region DASH_Spc34 PF08657.5 gi|529043488|ref|YP_008369707.1| - 0.027 14.1 3.6 0.056 13.0 2.5 1.4 1 0 0 1 1 1 0 DASH complex subunit Spc34 IncA PF04156.9 gi|529043488|ref|YP_008369707.1| - 0.038 13.5 3.7 0.087 12.4 2.6 1.5 1 0 0 1 1 1 0 IncA protein SOUL PF04832.7 gi|529043488|ref|YP_008369707.1| - 0.055 13.0 0.2 0.1 12.1 0.1 1.4 1 0 0 1 1 1 0 SOUL heme-binding protein TBPIP PF07106.8 gi|529043488|ref|YP_008369707.1| - 0.059 12.9 1.9 0.14 11.6 1.3 1.6 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) CBF_beta PF02312.12 gi|529043488|ref|YP_008369707.1| - 0.073 12.6 2.5 0.13 11.8 1.7 1.3 1 0 0 1 1 1 0 Core binding factor beta subunit DUF869 PF05911.6 gi|529043488|ref|YP_008369707.1| - 0.079 11.1 2.8 0.11 10.7 1.9 1.1 1 0 0 1 1 1 0 Plant protein of unknown function (DUF869) MCC-bdg_PDZ PF10506.4 gi|529043488|ref|YP_008369707.1| - 0.081 12.7 3.9 0.19 11.5 2.7 1.7 1 0 0 1 1 1 0 PDZ domain of MCC-2 bdg protein for Usher syndrome DUF2681 PF10883.3 gi|529043488|ref|YP_008369707.1| - 0.11 12.7 1.3 0.34 11.1 0.9 1.8 2 0 0 2 2 1 0 Protein of unknown function (DUF2681) DUF972 PF06156.8 gi|529043488|ref|YP_008369707.1| - 0.12 12.7 3.8 0.11 12.8 1.4 1.7 2 0 0 2 2 1 0 Protein of unknown function (DUF972) DUF3584 PF12128.3 gi|529043488|ref|YP_008369707.1| - 0.17 9.1 3.3 0.24 8.6 2.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) CtIP_N PF10482.4 gi|529043488|ref|YP_008369707.1| - 0.24 11.2 8.5 0.17 11.6 4.2 2.0 2 0 0 2 2 2 0 Tumour-suppressor protein CtIP N-terminal domain V_ATPase_I PF01496.14 gi|529043488|ref|YP_008369707.1| - 0.34 8.6 2.5 0.48 8.2 1.8 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family UPF0547 PF10571.4 gi|529043488|ref|YP_008369707.1| - 0.36 10.5 2.8 0.57 9.9 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Daxx PF03344.10 gi|529043488|ref|YP_008369707.1| - 0.37 9.2 7.2 0.57 8.6 5.0 1.1 1 0 0 1 1 1 0 Daxx Family TMF_DNA_bd PF12329.3 gi|529043488|ref|YP_008369707.1| - 0.53 10.1 8.2 0.24 11.2 2.0 2.2 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding DivIC PF04977.10 gi|529043488|ref|YP_008369707.1| - 0.58 9.6 7.7 0.15 11.5 2.4 2.2 2 0 0 2 2 2 0 Septum formation initiator DDE_Tnp_IS240 PF13610.1 gi|529043488|ref|YP_008369707.1| - 0.59 10.0 2.8 0.44 10.4 0.1 2.2 2 1 0 2 2 2 0 DDE domain APG6 PF04111.7 gi|529043488|ref|YP_008369707.1| - 1.4 7.9 4.5 2.3 7.1 3.1 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 zf-IS66 PF13005.2 gi|529043488|ref|YP_008369707.1| - 4.8 7.2 13.2 0.093 12.7 3.8 2.2 2 0 0 2 2 1 0 zinc-finger binding domain of transposase IS66 bZIP_2 PF07716.10 gi|529043488|ref|YP_008369707.1| - 5.4 6.9 12.9 0.33 10.8 4.6 2.3 2 1 1 3 3 2 0 Basic region leucine zipper GH97_N PF14508.1 gi|529043490|ref|YP_008369709.1| - 0.038 12.9 0.0 0.043 12.7 0.0 1.0 1 0 0 1 1 1 0 Glycosyl-hydrolase 97 N-terminal HATPase_c PF02518.21 gi|529043491|ref|YP_008369710.1| - 4.6e-20 71.4 0.0 9.6e-20 70.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|529043491|ref|YP_008369710.1| - 1.9e-07 30.9 0.1 3.7e-07 29.9 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|529043491|ref|YP_008369710.1| - 3.9e-05 23.2 0.0 7.8e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 GHKL domain HisKA PF00512.20 gi|529043491|ref|YP_008369710.1| - 0.012 15.5 1.4 0.029 14.3 0.7 1.9 1 1 0 1 1 1 0 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.1 gi|529043491|ref|YP_008369710.1| - 0.033 13.8 0.1 0.074 12.7 0.1 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Acyl_transf_3 PF01757.17 gi|529043491|ref|YP_008369710.1| - 0.033 13.0 3.2 0.045 12.5 2.2 1.1 1 0 0 1 1 1 0 Acyltransferase family HisKA_2 PF07568.7 gi|529043491|ref|YP_008369710.1| - 0.038 13.8 0.0 0.077 12.8 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase Beta-Casp PF10996.3 gi|529043492|ref|YP_008369711.1| - 6.7e-20 71.2 0.0 1.2e-19 70.5 0.0 1.4 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|529043492|ref|YP_008369711.1| - 4.7e-18 65.5 3.2 1.8e-17 63.6 2.1 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|529043492|ref|YP_008369711.1| - 4e-16 59.1 0.9 1.8e-14 53.7 0.3 2.4 2 0 0 2 2 2 1 Beta-lactamase superfamily domain RMMBL PF07521.7 gi|529043492|ref|YP_008369711.1| - 1e-05 25.2 0.0 2.1e-05 24.2 0.0 1.6 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase PDEase_II PF02112.10 gi|529043492|ref|YP_008369711.1| - 0.044 12.7 0.0 0.074 11.9 0.0 1.2 1 0 0 1 1 1 0 cAMP phosphodiesterases class-II Lactamase_B_3 PF13483.1 gi|529043492|ref|YP_008369711.1| - 0.12 12.0 0.0 0.24 11.0 0.0 1.6 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Y_Y_Y PF07495.8 gi|529043494|ref|YP_008369713.1| - 0.0047 16.6 0.0 0.0081 15.9 0.0 1.4 1 0 0 1 1 1 1 Y_Y_Y domain A2M_N PF01835.14 gi|529043494|ref|YP_008369713.1| - 0.081 13.1 0.1 0.11 12.7 0.0 1.3 1 0 0 1 1 1 0 MG2 domain DUF4399 PF14347.1 gi|529043494|ref|YP_008369713.1| - 0.14 12.2 0.3 0.21 11.6 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4399) CbiA PF01656.18 gi|529043495|ref|YP_008369714.1| - 1.5e-24 86.4 0.0 1.9e-24 86.1 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|529043495|ref|YP_008369714.1| - 6.2e-08 32.7 0.1 5.6e-07 29.6 0.0 2.2 1 1 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|529043495|ref|YP_008369714.1| - 3.6e-06 26.2 0.4 2.5e-05 23.5 0.3 2.1 1 1 0 1 1 1 1 ATPase MipZ YhjQ PF06564.7 gi|529043495|ref|YP_008369714.1| - 6.2e-06 25.7 0.1 1.9e-05 24.1 0.1 1.7 1 1 0 1 1 1 1 YhjQ protein Fer4_NifH PF00142.13 gi|529043495|ref|YP_008369714.1| - 0.00037 19.7 0.1 0.017 14.3 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.10 gi|529043495|ref|YP_008369714.1| - 0.0029 16.6 0.1 0.0071 15.4 0.0 1.6 2 0 0 2 2 2 1 Anion-transporting ATPase VirC1 PF07015.6 gi|529043495|ref|YP_008369714.1| - 0.098 11.7 0.0 0.44 9.5 0.0 1.9 2 0 0 2 2 2 0 VirC1 protein Borrelia_P83 PF05262.6 gi|529043496|ref|YP_008369715.1| - 0.048 11.9 2.6 0.056 11.7 1.8 1.1 1 0 0 1 1 1 0 Borrelia P83/100 protein Prefoldin PF02996.12 gi|529043496|ref|YP_008369715.1| - 0.066 12.8 3.2 1.3 8.7 2.2 2.3 1 1 0 1 1 1 0 Prefoldin subunit RRN3 PF05327.6 gi|529043496|ref|YP_008369715.1| - 5.9 4.8 8.6 6.6 4.7 5.9 1.0 1 0 0 1 1 1 0 RNA polymerase I specific transcription initiation factor RRN3 Antitoxin-MazE PF04014.13 gi|529043497|ref|YP_008369716.1| - 8.3e-07 28.6 0.2 1.3e-06 28.0 0.1 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE OrfB_IS605 PF01385.14 gi|529043498|ref|YP_008369717.1| - 3.2e-63 213.1 0.0 4e-63 212.8 0.0 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|529043498|ref|YP_008369717.1| - 1.9e-18 65.8 0.1 3.4e-18 65.0 0.1 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|529043498|ref|YP_008369717.1| - 0.31 10.3 2.8 0.63 9.4 2.0 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding Prim_Zn_Ribbon PF08273.7 gi|529043498|ref|YP_008369717.1| - 1.5 8.9 6.6 0.29 11.2 1.8 2.0 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase PIN PF01850.16 gi|529043499|ref|YP_008369718.1| - 1.1e-10 41.9 0.0 1.3e-10 41.6 0.0 1.1 1 0 0 1 1 1 1 PIN domain DUF2800 PF10926.3 gi|529043501|ref|YP_008369720.1| - 0.012 14.7 0.0 0.018 14.1 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2800) DUF2730 PF10805.3 gi|529043501|ref|YP_008369720.1| - 0.12 12.1 2.0 0.41 10.3 0.6 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF2730) YqzH PF14164.1 gi|529043501|ref|YP_008369720.1| - 0.12 12.2 0.1 0.12 12.2 0.0 3.2 4 0 0 4 4 4 0 YqzH-like protein MerR-DNA-bind PF09278.6 gi|529043501|ref|YP_008369720.1| - 1.9 8.9 5.7 2 8.9 2.0 2.5 2 1 0 2 2 2 0 MerR, DNA binding IncA PF04156.9 gi|529043501|ref|YP_008369720.1| - 2.8 7.5 6.4 0.63 9.6 1.7 1.9 3 0 0 3 3 3 0 IncA protein ACT_5 PF13710.1 gi|529043502|ref|YP_008369721.1| - 0.14 12.0 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 ACT domain DUF2249 PF10006.4 gi|529043505|ref|YP_008369724.1| - 0.0042 16.6 0.2 0.0042 16.6 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) Terminase_GpA PF05876.7 gi|529043506|ref|YP_008369725.1| - 0.0052 15.2 0.2 0.0052 15.2 0.1 1.0 1 0 0 1 1 1 1 Phage terminase large subunit (GpA) zf-C2H2_4 PF13894.1 gi|529043506|ref|YP_008369725.1| - 0.014 15.6 0.4 0.35 11.3 0.0 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger Zn-ribbon_8 PF09723.5 gi|529043506|ref|YP_008369725.1| - 0.018 14.9 0.5 0.75 9.8 0.0 2.2 2 0 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_5 PF13719.1 gi|529043506|ref|YP_008369725.1| - 0.021 14.4 0.2 4.6 6.8 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-dskA_traR PF01258.12 gi|529043506|ref|YP_008369725.1| - 0.024 14.3 2.1 0.48 10.2 0.0 2.2 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger FANCL_C PF11793.3 gi|529043506|ref|YP_008369725.1| - 0.042 13.8 1.4 1.8 8.5 0.1 2.1 1 1 1 2 2 2 0 FANCL C-terminal domain zf-Di19 PF05605.7 gi|529043506|ref|YP_008369725.1| - 0.044 13.9 0.2 0.087 12.9 0.1 1.5 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding Prok-RING_1 PF14446.1 gi|529043506|ref|YP_008369725.1| - 0.053 13.2 0.2 4.8 6.9 0.0 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 XPA_N PF01286.13 gi|529043506|ref|YP_008369725.1| - 0.055 13.1 0.7 0.26 10.9 0.0 2.0 2 0 0 2 2 2 0 XPA protein N-terminal zf-C2H2 PF00096.21 gi|529043506|ref|YP_008369725.1| - 0.057 13.7 0.9 0.33 11.3 0.0 2.0 2 0 0 2 2 2 0 Zinc finger, C2H2 type UPF0150 PF03681.10 gi|529043506|ref|YP_008369725.1| - 0.058 13.0 0.1 3.6 7.2 0.1 2.1 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0150) zinc_ribbon_4 PF13717.1 gi|529043506|ref|YP_008369725.1| - 0.06 13.0 0.1 8.1 6.2 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain DUF329 PF03884.9 gi|529043506|ref|YP_008369725.1| - 0.092 12.3 0.9 4.6 6.8 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF329) DZR PF12773.2 gi|529043506|ref|YP_008369725.1| - 0.11 12.3 0.6 0.28 11.0 0.4 1.7 1 1 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|529043506|ref|YP_008369725.1| - 0.12 11.7 0.7 1.9 7.8 0.0 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zf-H2C2_2 PF13465.1 gi|529043506|ref|YP_008369725.1| - 0.14 12.5 0.8 12 6.4 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger double domain DUF4428 PF14471.1 gi|529043506|ref|YP_008369725.1| - 0.15 11.8 0.7 1.8 8.4 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) UPF0547 PF10571.4 gi|529043506|ref|YP_008369725.1| - 0.16 11.6 6.7 1.3 8.8 0.1 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Sgf11 PF08209.6 gi|529043506|ref|YP_008369725.1| - 0.2 11.0 1.2 0.99 8.7 0.1 2.0 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zinc-ribbons_6 PF07191.7 gi|529043506|ref|YP_008369725.1| - 0.2 11.4 1.0 3.9 7.3 0.0 1.8 1 1 0 2 2 2 0 zinc-ribbons zf-C3HC4_3 PF13920.1 gi|529043506|ref|YP_008369725.1| - 0.44 10.2 2.7 4.6 6.9 2.0 1.9 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) DNA_ligase_ZBD PF03119.11 gi|529043506|ref|YP_008369725.1| - 0.45 10.2 4.2 9.5 6.0 0.0 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DUF35_N PF12172.3 gi|529043506|ref|YP_008369725.1| - 0.64 10.0 0.3 0.64 10.0 0.2 2.0 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_2 PF13240.1 gi|529043506|ref|YP_008369725.1| - 0.89 9.1 0.2 0.89 9.1 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|529043506|ref|YP_008369725.1| - 1 8.6 3.8 6.3 6.1 2.7 2.0 1 1 1 2 2 2 0 zinc-ribbon domain Phage_int_SAM_1 PF02899.12 gi|529043507|ref|YP_008369726.1| - 2.6e-06 27.4 0.3 0.00012 22.1 0.0 3.2 3 0 0 3 3 3 1 Phage integrase, N-terminal SAM-like domain Phage_integrase PF00589.17 gi|529043507|ref|YP_008369726.1| - 0.0018 17.9 0.0 0.011 15.4 0.0 2.2 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|529043507|ref|YP_008369726.1| - 0.0032 17.7 0.0 0.007 16.6 0.0 1.6 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Cep57_MT_bd PF06657.8 gi|529043508|ref|YP_008369727.1| - 0.062 13.2 1.6 1.1 9.2 1.1 2.1 1 1 0 1 1 1 0 Centrosome microtubule-binding domain of Cep57 PspB PF06667.7 gi|529043508|ref|YP_008369727.1| - 0.092 12.6 1.7 1.9 8.4 0.1 2.1 2 0 0 2 2 2 0 Phage shock protein B Spectrin PF00435.16 gi|529043508|ref|YP_008369727.1| - 0.11 12.7 1.8 0.16 12.2 1.2 1.3 1 0 0 1 1 1 0 Spectrin repeat HR1 PF02185.11 gi|529043508|ref|YP_008369727.1| - 0.16 11.7 0.8 0.53 10.0 0.0 2.0 2 0 0 2 2 2 0 Hr1 repeat DDE_5 PF13546.1 gi|529043510|ref|YP_008369729.1| - 4.7e-16 58.4 0.0 9e-16 57.5 0.0 1.4 1 1 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.16 gi|529043510|ref|YP_008369729.1| - 1.6e-14 54.0 0.1 2.6e-14 53.2 0.1 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|529043510|ref|YP_008369729.1| - 1.1e-05 24.6 0.2 3.8e-05 22.8 0.1 1.7 1 1 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_6 PF13751.1 gi|529043510|ref|YP_008369729.1| - 0.012 15.5 0.0 0.041 13.8 0.0 1.9 2 0 0 2 2 2 0 Transposase DDE domain DUF4224 PF13986.1 gi|529043511|ref|YP_008369730.1| - 0.2 11.2 0.5 0.25 10.8 0.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4224) TrmB PF01978.14 gi|529043513|ref|YP_008369732.1| - 1.6e-09 37.3 0.0 3.1e-09 36.4 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|529043513|ref|YP_008369732.1| - 3.4e-05 23.5 0.0 7e-05 22.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|529043513|ref|YP_008369732.1| - 0.00012 21.5 0.0 0.00037 20.0 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|529043513|ref|YP_008369732.1| - 0.0016 18.0 0.0 0.0028 17.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|529043513|ref|YP_008369732.1| - 0.0027 17.3 0.0 0.0045 16.6 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|529043513|ref|YP_008369732.1| - 0.003 17.1 0.0 0.0088 15.6 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|529043513|ref|YP_008369732.1| - 0.004 16.4 0.0 0.013 14.9 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|529043513|ref|YP_008369732.1| - 0.048 13.9 0.0 0.11 12.8 0.0 1.6 1 1 0 1 1 1 0 Winged helix DNA-binding domain PadR PF03551.9 gi|529043513|ref|YP_008369732.1| - 0.053 13.2 0.0 0.1 12.3 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Cdc6_C PF09079.6 gi|529043513|ref|YP_008369732.1| - 0.096 12.4 0.0 0.19 11.4 0.0 1.6 2 0 0 2 2 2 0 CDC6, C terminal HTH_DeoR PF08220.7 gi|529043513|ref|YP_008369732.1| - 0.1 12.1 0.0 0.25 10.8 0.0 1.7 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain DDE_Tnp_1 PF01609.16 gi|529043514|ref|YP_008369733.1| - 7.6e-11 41.9 0.5 1.3e-10 41.2 0.3 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|529043514|ref|YP_008369733.1| - 0.025 14.7 0.5 0.078 13.1 0.2 1.9 1 1 1 2 2 2 0 Transposase DDE domain CXCR4_N PF12109.3 gi|529043515|ref|YP_008369734.1| - 0.068 12.9 0.1 0.088 12.6 0.1 1.2 1 0 0 1 1 1 0 CXCR4 Chemokine receptor N terminal TauE PF01925.14 gi|529043516|ref|YP_008369735.1| - 0.00072 19.0 1.6 0.00077 18.9 1.1 1.1 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE NADH_dh_m_C1 PF15088.1 gi|529043516|ref|YP_008369735.1| - 0.088 12.3 1.2 0.59 9.6 0.1 2.1 2 0 0 2 2 2 0 NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial PRiA4_ORF3 PF07929.6 gi|529043518|ref|YP_008369737.1| - 1.4e-12 47.3 0.1 1.5e-11 44.0 0.0 2.0 2 0 0 2 2 2 1 Plasmid pRiA4b ORF-3-like protein DUF3499 PF12005.3 gi|529043518|ref|YP_008369737.1| - 0.018 15.2 0.1 0.027 14.6 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3499) DUF2800 PF10926.3 gi|529043519|ref|YP_008369738.1| - 0.00024 20.3 0.2 0.0005 19.3 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF2800) DUF2383 PF09537.5 gi|529043519|ref|YP_008369738.1| - 0.018 15.2 1.7 0.35 11.1 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF2383) Phage_Mu_Gam PF07352.7 gi|529043519|ref|YP_008369738.1| - 0.051 13.0 1.3 0.46 9.9 0.0 2.2 1 1 1 2 2 2 0 Bacteriophage Mu Gam like protein FlaC_arch PF05377.6 gi|529043519|ref|YP_008369738.1| - 0.053 13.4 0.7 1.9 8.4 0.1 2.6 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) SPT6_acidic PF14632.1 gi|529043521|ref|YP_008369740.1| - 0.13 12.4 5.7 0.29 11.3 4.0 1.5 1 0 0 1 1 1 0 Acidic N-terminal SPT6 DUF3368 PF11848.3 gi|529043522|ref|YP_008369741.1| - 1.6e-05 24.3 0.0 3.2e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3368) UPF0175 PF03683.8 gi|529043523|ref|YP_008369742.1| - 2.4e-17 62.1 2.2 3.2e-17 61.7 1.5 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) RHH_2 PF03693.9 gi|529043523|ref|YP_008369742.1| - 0.096 12.8 0.1 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0156) CbiA PF01656.18 gi|529043525|ref|YP_008369744.1| - 5.4e-23 81.4 0.0 6.8e-23 81.0 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|529043525|ref|YP_008369744.1| - 3e-10 40.2 0.2 3.3e-09 36.8 0.0 2.3 2 1 0 2 2 2 1 AAA domain YhjQ PF06564.7 gi|529043525|ref|YP_008369744.1| - 1.5e-08 34.3 0.0 1.7e-08 34.1 0.0 1.1 1 0 0 1 1 1 1 YhjQ protein ArsA_ATPase PF02374.10 gi|529043525|ref|YP_008369744.1| - 1e-07 31.3 0.0 2.3e-07 30.1 0.0 1.6 2 0 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.6 gi|529043525|ref|YP_008369744.1| - 7.4e-07 28.5 0.3 0.00032 19.8 0.0 2.3 2 1 0 2 2 2 2 ATPase MipZ Fer4_NifH PF00142.13 gi|529043525|ref|YP_008369744.1| - 0.00094 18.4 0.0 0.002 17.3 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.1 gi|529043525|ref|YP_008369744.1| - 0.0034 16.8 0.0 0.0078 15.6 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|529043525|ref|YP_008369744.1| - 0.0091 16.8 0.0 0.017 15.9 0.0 1.8 1 1 0 1 1 1 1 AAA domain VirC1 PF07015.6 gi|529043525|ref|YP_008369744.1| - 0.027 13.5 0.1 0.99 8.4 0.0 2.1 2 0 0 2 2 2 0 VirC1 protein AAA_18 PF13238.1 gi|529043525|ref|YP_008369744.1| - 0.042 14.1 0.0 0.14 12.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|529043525|ref|YP_008369744.1| - 0.054 12.9 0.0 0.09 12.2 0.0 1.6 1 1 0 1 1 1 0 AAA-like domain APS_kinase PF01583.15 gi|529043525|ref|YP_008369744.1| - 0.054 13.1 0.0 0.1 12.2 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase RcbX PF02341.10 gi|529043525|ref|YP_008369744.1| - 0.056 13.5 0.3 0.092 12.8 0.2 1.3 1 0 0 1 1 1 0 RbcX protein Methyltransf_26 PF13659.1 gi|529043525|ref|YP_008369744.1| - 0.13 12.3 0.0 0.26 11.3 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain CSTF2_hinge PF14327.1 gi|529043526|ref|YP_008369745.1| - 0.035 14.1 0.0 0.052 13.6 0.0 1.2 1 0 0 1 1 1 0 Hinge domain of cleavage stimulation factor subunit 2 AAA_16 PF13191.1 gi|529043527|ref|YP_008369746.1| - 1.6e-17 64.1 1.9 4e-16 59.5 0.0 2.8 2 1 0 2 2 2 1 AAA ATPase domain Cdc6_C PF09079.6 gi|529043527|ref|YP_008369746.1| - 2.8e-14 52.6 0.1 1.2e-13 50.6 0.0 2.2 2 0 0 2 2 2 1 CDC6, C terminal AAA PF00004.24 gi|529043527|ref|YP_008369746.1| - 1.3e-10 41.5 0.0 9.3e-10 38.8 0.0 2.4 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|529043527|ref|YP_008369746.1| - 4.7e-06 26.7 0.0 1.1e-05 25.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.8 gi|529043527|ref|YP_008369746.1| - 4.1e-05 22.6 0.0 8.1e-05 21.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Arch_ATPase PF01637.13 gi|529043527|ref|YP_008369746.1| - 7.6e-05 22.5 0.0 0.00027 20.7 0.0 2.0 2 1 0 2 2 2 1 Archaeal ATPase AAA_17 PF13207.1 gi|529043527|ref|YP_008369746.1| - 0.00069 20.4 0.2 0.0031 18.3 0.1 2.3 1 1 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|529043527|ref|YP_008369746.1| - 0.0031 17.6 0.1 0.022 14.9 0.0 2.5 3 0 0 3 3 3 1 RNA helicase Sigma54_activat PF00158.21 gi|529043527|ref|YP_008369746.1| - 0.0034 16.8 0.0 0.0077 15.7 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_18 PF13238.1 gi|529043527|ref|YP_008369746.1| - 0.0098 16.2 0.0 0.031 14.5 0.0 1.9 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|529043527|ref|YP_008369746.1| - 0.012 15.9 0.0 0.04 14.2 0.0 2.0 2 1 0 2 2 2 0 ABC transporter AAA_5 PF07728.9 gi|529043527|ref|YP_008369746.1| - 0.014 15.0 0.1 0.089 12.5 0.1 2.3 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.1 gi|529043527|ref|YP_008369746.1| - 0.015 14.6 0.5 0.075 12.4 0.1 2.3 2 1 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|529043527|ref|YP_008369746.1| - 0.024 14.2 0.0 0.081 12.5 0.0 1.8 1 1 0 1 1 1 0 NACHT domain Mg_chelatase PF01078.16 gi|529043527|ref|YP_008369746.1| - 0.026 13.6 0.0 0.057 12.5 0.0 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Sigma54_activ_2 PF14532.1 gi|529043527|ref|YP_008369746.1| - 0.029 14.4 0.0 0.055 13.5 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain PIF1 PF05970.9 gi|529043527|ref|YP_008369746.1| - 0.03 13.2 0.0 0.047 12.6 0.0 1.4 1 0 0 1 1 1 0 PIF1-like helicase IstB_IS21 PF01695.12 gi|529043527|ref|YP_008369746.1| - 0.043 13.2 0.0 0.12 11.8 0.0 1.7 1 0 0 1 1 1 0 IstB-like ATP binding protein DUF1993 PF09351.5 gi|529043528|ref|YP_008369747.1| - 0.096 12.6 0.0 0.11 12.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1993) RRP7 PF12923.2 gi|529043528|ref|YP_008369747.1| - 0.13 12.2 0.1 0.15 12.0 0.1 1.1 1 0 0 1 1 1 0 Ribosomal RNA-processing protein 7 (RRP7) C6_DPF PF10170.4 gi|529043529|ref|YP_008369748.1| - 0.14 12.1 0.0 0.17 11.9 0.0 1.1 1 0 0 1 1 1 0 Cysteine-rich domain LTD PF00932.14 gi|529043530|ref|YP_008369749.1| - 1.3e-21 76.8 3.0 1.3e-21 76.8 2.1 2.9 3 0 0 3 3 3 1 Lamin Tail Domain Lactamase_B PF00753.22 gi|529043530|ref|YP_008369749.1| - 2.1e-12 47.0 0.5 5.3e-12 45.8 0.3 1.8 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily DUF3597 PF12200.3 gi|529043530|ref|YP_008369749.1| - 0.94 9.8 2.5 3.3 8.0 0.8 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3597) DUF3006 PF11213.3 gi|529043531|ref|YP_008369750.1| - 1.6e-11 43.8 2.2 1.8e-11 43.6 1.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3006) SNARE PF05739.14 gi|529043531|ref|YP_008369750.1| - 0.029 14.0 0.6 0.21 11.3 0.0 2.0 2 0 0 2 2 2 0 SNARE domain Transposase_20 PF02371.11 gi|529043532|ref|YP_008369751.1| - 2.8e-24 85.0 0.0 1e-23 83.2 0.0 1.8 2 0 0 2 2 2 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.12 gi|529043532|ref|YP_008369751.1| - 3.7e-16 59.0 0.5 7.2e-16 58.1 0.4 1.5 1 0 0 1 1 1 1 Transposase NPV_P10 PF05531.7 gi|529043532|ref|YP_008369751.1| - 0.0064 16.7 0.6 0.058 13.6 0.2 2.2 2 0 0 2 2 2 1 Nucleopolyhedrovirus P10 protein Anophelin PF10731.4 gi|529043533|ref|YP_008369752.1| - 8.2 6.6 11.7 74 3.5 8.1 2.1 1 1 0 1 1 1 0 Thrombin inhibitor from mosquito DDE_Tnp_1 PF01609.16 gi|529043534|ref|YP_008369753.1| - 6.9e-05 22.4 0.9 0.00012 21.7 0.6 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_7 PF13843.1 gi|529043534|ref|YP_008369753.1| - 0.00082 18.5 0.0 0.012 14.6 0.0 2.2 2 0 0 2 2 2 1 Transposase IS4 DUF772 PF05598.6 gi|529043534|ref|YP_008369753.1| - 0.0045 16.8 0.5 0.035 14.0 0.0 2.4 2 0 0 2 2 2 1 Transposase domain (DUF772) Aldolase_II PF00596.16 gi|529043535|ref|YP_008369754.1| - 1.8e-44 151.5 0.0 2.1e-44 151.3 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain FGGY_N PF00370.16 gi|529043536|ref|YP_008369755.1| - 5.8e-64 215.7 0.0 8e-64 215.2 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.11 gi|529043536|ref|YP_008369755.1| - 7.7e-33 113.7 0.0 1.1e-32 113.2 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.15 gi|529043536|ref|YP_008369755.1| - 0.00039 19.7 0.0 0.00074 18.8 0.0 1.4 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family DUF2264 PF10022.4 gi|529043537|ref|YP_008369756.1| - 5e-123 410.3 0.1 6.3e-123 410.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2264) Glyco_hydro_88 PF07470.8 gi|529043538|ref|YP_008369757.1| - 1.8e-37 129.1 2.0 2.2e-37 128.8 1.4 1.1 1 0 0 1 1 1 1 Glycosyl Hydrolase Family 88 HTH_13 PF11972.3 gi|529043538|ref|YP_008369757.1| - 0.053 13.3 0.0 4.3 7.2 0.0 3.1 3 0 0 3 3 3 0 HTH DNA binding domain DUF1680 PF07944.7 gi|529043538|ref|YP_008369757.1| - 0.054 11.7 0.0 0.12 10.5 0.0 1.3 1 1 0 1 1 1 0 Putative glycosyl hydrolase of unknown function (DUF1680) Aldo_ket_red PF00248.16 gi|529043539|ref|YP_008369758.1| - 1.4e-64 217.6 0.0 1.8e-64 217.3 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family DUF4380 PF14315.1 gi|529043540|ref|YP_008369759.1| - 4.5e-67 226.1 0.0 5.2e-67 225.9 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4380) Glyco_hydro_42 PF02449.10 gi|529043541|ref|YP_008369760.1| - 1.9e-148 494.5 1.9 2.3e-148 494.2 1.3 1.1 1 0 0 1 1 1 1 Beta-galactosidase Glyco_hydro_42M PF08532.5 gi|529043541|ref|YP_008369760.1| - 4.1e-57 192.6 0.0 5.9e-57 192.1 0.0 1.2 1 0 0 1 1 1 1 Beta-galactosidase trimerisation domain Glyco_hydro_14 PF01373.12 gi|529043541|ref|YP_008369760.1| - 2e-05 23.5 0.0 7.6e-05 21.6 0.0 1.8 2 0 0 2 2 2 1 Glycosyl hydrolase family 14 Cellulase PF00150.13 gi|529043541|ref|YP_008369760.1| - 6.4e-05 22.2 0.0 9.7e-05 21.6 0.0 1.3 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) Glyco_hydro_35 PF01301.14 gi|529043541|ref|YP_008369760.1| - 0.002 17.5 0.0 0.0035 16.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 35 Glyco_hydro_42C PF08533.5 gi|529043541|ref|YP_008369760.1| - 0.0023 17.4 0.0 0.0058 16.1 0.0 1.7 1 0 0 1 1 1 1 Beta-galactosidase C-terminal domain BBIP10 PF14777.1 gi|529043541|ref|YP_008369760.1| - 0.06 12.7 0.0 0.11 11.8 0.0 1.3 1 0 0 1 1 1 0 Cilia BBSome complex subunit 10 BPD_transp_1 PF00528.17 gi|529043542|ref|YP_008369761.1| - 5.4e-19 68.4 13.3 5.4e-19 68.4 9.2 2.0 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|529043543|ref|YP_008369762.1| - 2.2e-36 125.1 12.0 3.1e-36 124.6 8.3 1.2 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component Cytomega_US3 PF05963.6 gi|529043543|ref|YP_008369762.1| - 0.06 12.6 0.1 0.11 11.8 0.1 1.5 1 0 0 1 1 1 0 Cytomegalovirus US3 protein zf-DHHC PF01529.15 gi|529043543|ref|YP_008369762.1| - 0.24 10.7 0.4 0.44 9.9 0.0 1.8 2 1 0 2 2 2 0 DHHC palmitoyltransferase SBP_bac_5 PF00496.17 gi|529043544|ref|YP_008369763.1| - 2.6e-33 115.3 1.6 4.4e-33 114.6 1.1 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle DUF1680 PF07944.7 gi|529043546|ref|YP_008369765.1| - 1.2e-164 548.4 0.0 1.5e-164 548.1 0.0 1.1 1 0 0 1 1 1 1 Putative glycosyl hydrolase of unknown function (DUF1680) BNR_2 PF13088.1 gi|529043547|ref|YP_008369766.1| - 8e-12 45.0 1.6 8.1e-09 35.1 0.1 3.1 1 1 2 3 3 3 3 BNR repeat-like domain BNR PF02012.15 gi|529043547|ref|YP_008369766.1| - 0.00084 18.8 23.7 0.044 13.5 0.6 4.9 6 0 0 6 6 6 3 BNR/Asp-box repeat DUF4185 PF13810.1 gi|529043547|ref|YP_008369766.1| - 0.0034 16.3 0.1 4.7 6.0 0.0 3.0 2 1 1 3 3 3 2 Domain of unknown function (DUF4185) PSII_BNR PF14870.1 gi|529043547|ref|YP_008369766.1| - 0.016 14.2 0.2 1.2 8.0 0.0 2.9 3 0 0 3 3 3 0 Photosynthesis system II assembly factor YCF48 ClpB_D2-small PF10431.4 gi|529043548|ref|YP_008369767.1| - 0.15 11.9 0.2 0.19 11.6 0.1 1.1 1 0 0 1 1 1 0 C-terminal, D2-small domain, of ClpB protein Alpha-L-AF_C PF06964.7 gi|529043549|ref|YP_008369768.1| - 3.8e-11 43.0 0.0 9e-11 41.8 0.0 1.5 1 1 0 1 1 1 1 Alpha-L-arabinofuranosidase C-terminus Alpha-L-AF_C PF06964.7 gi|529043550|ref|YP_008369769.1| - 9.6e-31 106.9 2.1 1.3e-30 106.4 1.5 1.2 1 0 0 1 1 1 1 Alpha-L-arabinofuranosidase C-terminus Alpha-L-AF_C PF06964.7 gi|529043551|ref|YP_008369770.1| - 1.3e-31 109.7 2.4 1.9e-31 109.1 1.7 1.2 1 0 0 1 1 1 1 Alpha-L-arabinofuranosidase C-terminus EF-hand_6 PF13405.1 gi|529043552|ref|YP_008369771.1| - 0.031 14.1 7.6 0.12 12.3 0.5 3.5 3 0 0 3 3 3 0 EF-hand domain EF-hand_1 PF00036.27 gi|529043552|ref|YP_008369771.1| - 0.049 12.9 8.8 0.49 9.8 0.3 4.1 4 1 1 5 5 5 0 EF hand EF-hand_5 PF13202.1 gi|529043552|ref|YP_008369771.1| - 0.64 9.4 6.9 4.7 6.7 0.2 3.3 3 0 0 3 3 3 0 EF hand TAT_signal PF10518.4 gi|529043552|ref|YP_008369771.1| - 0.97 9.6 5.1 3.1 8.0 3.6 1.9 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence HTH_29 PF13551.1 gi|529043553|ref|YP_008369772.1| - 1.2e-19 70.4 0.0 2e-19 69.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_32 PF13565.1 gi|529043553|ref|YP_008369772.1| - 1.1e-14 54.9 0.3 2.7e-14 53.7 0.1 1.8 2 0 0 2 2 2 1 Homeodomain-like domain HTH_33 PF13592.1 gi|529043553|ref|YP_008369772.1| - 4e-11 42.2 0.0 2.5e-10 39.7 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn helix HTH_28 PF13518.1 gi|529043553|ref|YP_008369772.1| - 1.7e-07 31.1 0.0 6.3e-07 29.2 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|529043553|ref|YP_008369772.1| - 4.1e-07 29.4 0.0 1.6e-06 27.5 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_11 PF08279.7 gi|529043553|ref|YP_008369772.1| - 3.4e-05 23.3 0.0 8.1e-05 22.1 0.0 1.7 2 0 0 2 2 2 1 HTH domain HTH_38 PF13936.1 gi|529043553|ref|YP_008369772.1| - 5.8e-05 22.5 0.0 0.00032 20.2 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_4 PF13613.1 gi|529043553|ref|YP_008369772.1| - 6.4e-05 22.4 0.0 0.00018 20.9 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix of DDE superfamily endonuclease HTH_7 PF02796.10 gi|529043553|ref|YP_008369772.1| - 0.00037 20.2 0.0 0.025 14.4 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase MarR PF01047.17 gi|529043553|ref|YP_008369772.1| - 0.002 17.7 0.0 0.0032 17.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_Tnp_1 PF01527.15 gi|529043553|ref|YP_008369772.1| - 0.0026 17.6 0.0 0.0056 16.6 0.0 1.6 1 0 0 1 1 1 1 Transposase HTH_36 PF13730.1 gi|529043553|ref|YP_008369772.1| - 0.0039 17.2 0.0 0.0069 16.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_psq PF05225.11 gi|529043553|ref|YP_008369772.1| - 0.0058 16.1 0.0 0.01 15.3 0.0 1.4 1 0 0 1 1 1 1 helix-turn-helix, Psq domain HTH_Tnp_IS630 PF01710.11 gi|529043553|ref|YP_008369772.1| - 0.012 15.2 0.0 0.021 14.5 0.0 1.5 1 0 0 1 1 1 0 Transposase HBS1_N PF08938.5 gi|529043553|ref|YP_008369772.1| - 0.013 15.5 0.4 0.033 14.3 0.3 1.7 1 0 0 1 1 1 0 HBS1 N-terminus GntR PF00392.16 gi|529043553|ref|YP_008369772.1| - 0.013 14.8 0.0 0.076 12.4 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_27 PF13463.1 gi|529043553|ref|YP_008369772.1| - 0.018 15.3 0.1 0.11 12.8 0.0 2.2 2 0 0 2 2 2 0 Winged helix DNA-binding domain DUF2481 PF10654.4 gi|529043553|ref|YP_008369772.1| - 0.022 14.4 0.0 0.038 13.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2481) HTH_26 PF13443.1 gi|529043553|ref|YP_008369772.1| - 0.042 14.0 0.0 0.12 12.5 0.0 1.8 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain HTH_17 PF12728.2 gi|529043553|ref|YP_008369772.1| - 0.048 13.9 0.6 0.45 10.8 0.0 2.4 3 0 0 3 3 2 0 Helix-turn-helix domain Arabinose_Isome PF02610.10 gi|529043554|ref|YP_008369773.1| - 1.5e-171 570.2 0.0 1.9e-171 569.8 0.0 1.1 1 0 0 1 1 1 1 L-arabinose isomerase Arabinose_Iso_C PF11762.3 gi|529043554|ref|YP_008369773.1| - 5.9e-50 167.6 0.0 1.6e-49 166.2 0.0 1.8 2 0 0 2 2 2 1 L-arabinose isomerase C-terminal domain DUF2909 PF11137.3 gi|529043555|ref|YP_008369774.1| - 0.025 14.3 5.6 0.03 14.0 3.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2909) PepSY_TM_2 PF13703.1 gi|529043555|ref|YP_008369774.1| - 0.1 12.7 3.5 0.22 11.7 0.3 2.0 1 1 1 2 2 2 0 PepSY-associated TM helix NfeD PF01957.13 gi|529043555|ref|YP_008369774.1| - 0.28 11.3 1.5 0.3 11.2 1.0 1.0 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding Alpha-L-AF_C PF06964.7 gi|529043556|ref|YP_008369775.1| - 1.3e-35 122.7 2.0 1.7e-35 122.4 1.4 1.1 1 0 0 1 1 1 1 Alpha-L-arabinofuranosidase C-terminus Con-6 PF10346.4 gi|529043557|ref|YP_008369776.1| - 0.13 11.7 0.0 0.24 10.8 0.0 1.4 1 0 0 1 1 1 0 Conidiation protein 6 Atg14 PF10186.4 gi|529043558|ref|YP_008369777.1| - 5.5e-05 22.2 50.6 0.0037 16.2 10.3 4.2 2 2 2 4 4 4 3 UV radiation resistance protein and autophagy-related subunit 14 TBPIP PF07106.8 gi|529043558|ref|YP_008369777.1| - 0.0001 21.8 56.9 0.0095 15.5 2.8 4.5 2 2 2 4 4 4 3 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Reo_sigmaC PF04582.7 gi|529043558|ref|YP_008369777.1| - 0.00067 18.9 15.6 0.034 13.3 2.0 3.8 1 1 2 4 4 4 4 Reovirus sigma C capsid protein AAA_13 PF13166.1 gi|529043558|ref|YP_008369777.1| - 0.00087 17.8 46.4 0.033 12.6 12.9 2.5 1 1 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|529043558|ref|YP_008369777.1| - 0.0017 18.7 29.8 0.0017 18.7 20.6 4.9 1 1 2 3 3 3 1 AAA domain Baculo_PEP_C PF04513.7 gi|529043558|ref|YP_008369777.1| - 0.0018 18.0 26.1 0.53 10.0 2.1 5.1 3 2 3 6 6 5 2 Baculovirus polyhedron envelope protein, PEP, C terminus WEMBL PF05701.6 gi|529043558|ref|YP_008369777.1| - 0.0019 16.7 24.9 0.0019 16.7 17.3 2.3 2 0 0 2 2 2 1 Weak chloroplast movement under blue light IncA PF04156.9 gi|529043558|ref|YP_008369777.1| - 0.0047 16.5 85.4 0.18 11.3 19.6 4.8 2 2 1 3 3 3 2 IncA protein DivIC PF04977.10 gi|529043558|ref|YP_008369777.1| - 0.0077 15.6 76.1 0.032 13.7 0.6 9.0 2 2 6 9 9 9 3 Septum formation initiator Myosin_tail_1 PF01576.14 gi|529043558|ref|YP_008369777.1| - 0.01 13.6 77.9 0.14 9.9 23.9 3.1 2 1 1 3 3 3 0 Myosin tail DUF3584 PF12128.3 gi|529043558|ref|YP_008369777.1| - 0.013 12.9 60.8 0.63 7.3 17.9 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) NPV_P10 PF05531.7 gi|529043558|ref|YP_008369777.1| - 0.024 14.8 32.2 0.86 9.8 0.9 6.8 2 2 4 6 6 6 0 Nucleopolyhedrovirus P10 protein Spc7 PF08317.6 gi|529043558|ref|YP_008369777.1| - 0.025 13.2 62.9 0.2 10.2 13.2 4.1 2 2 2 4 4 4 0 Spc7 kinetochore protein CENP-F_leu_zip PF10473.4 gi|529043558|ref|YP_008369777.1| - 0.035 13.9 78.0 0.1 12.4 12.2 6.0 2 2 3 5 5 5 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ADIP PF11559.3 gi|529043558|ref|YP_008369777.1| - 0.059 13.2 58.6 0.028 14.3 8.1 5.8 2 2 4 6 6 6 0 Afadin- and alpha -actinin-Binding Seryl_tRNA_N PF02403.17 gi|529043558|ref|YP_008369777.1| - 0.082 12.9 61.5 0.1 12.6 7.2 5.7 2 2 3 5 5 5 0 Seryl-tRNA synthetase N-terminal domain DUF4200 PF13863.1 gi|529043558|ref|YP_008369777.1| - 0.29 11.1 75.0 0.66 9.9 0.8 7.0 2 2 4 6 6 6 0 Domain of unknown function (DUF4200) AAA_27 PF13514.1 gi|529043558|ref|YP_008369777.1| - 0.3 8.7 63.6 0.084 10.5 17.0 2.7 2 1 0 2 2 2 0 AAA domain GAS PF13851.1 gi|529043558|ref|YP_008369777.1| - 0.47 9.6 58.7 0.071 12.3 8.3 4.3 2 2 2 4 4 4 0 Growth-arrest specific micro-tubule binding IFT57 PF10498.4 gi|529043558|ref|YP_008369777.1| - 0.5 9.0 39.1 0.064 11.9 9.0 2.6 2 1 0 2 2 2 0 Intra-flagellar transport protein 57 Tropomyosin_1 PF12718.2 gi|529043558|ref|YP_008369777.1| - 0.58 9.9 83.3 0.11 12.3 10.1 5.2 1 1 3 4 4 4 0 Tropomyosin like Filament PF00038.16 gi|529043558|ref|YP_008369777.1| - 0.64 9.4 65.7 0.081 12.3 5.1 4.1 2 2 1 3 3 3 0 Intermediate filament protein Mnd1 PF03962.10 gi|529043558|ref|YP_008369777.1| - 1.2 8.7 59.2 0.24 11.0 9.6 4.8 1 1 4 5 5 5 0 Mnd1 family DUF4140 PF13600.1 gi|529043558|ref|YP_008369777.1| - 1.5 9.3 73.4 0.096 13.1 1.3 8.9 2 2 4 6 6 5 0 N-terminal domain of unknown function (DUF4140) LPP PF04728.8 gi|529043558|ref|YP_008369777.1| - 1.5 8.6 8.9 5.1 6.9 0.1 4.6 4 2 1 5 5 4 0 Lipoprotein leucine-zipper DUF4201 PF13870.1 gi|529043558|ref|YP_008369777.1| - 2.2 7.6 53.9 0.63 9.4 1.8 4.9 2 2 1 4 4 4 0 Domain of unknown function (DUF4201) BLOC1_2 PF10046.4 gi|529043558|ref|YP_008369777.1| - 2.8 8.1 47.8 0.33 11.1 5.4 6.2 4 2 2 6 6 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF972 PF06156.8 gi|529043558|ref|YP_008369777.1| - 4.9 7.5 49.7 0.31 11.4 1.2 5.9 2 2 3 5 5 5 0 Protein of unknown function (DUF972) DUF342 PF03961.8 gi|529043558|ref|YP_008369777.1| - 5.6 5.2 48.2 1.2 7.4 7.3 4.3 2 2 2 4 4 4 0 Protein of unknown function (DUF342) WXG100 PF06013.7 gi|529043558|ref|YP_008369777.1| - 5.9 6.9 28.4 12 5.9 0.2 7.2 4 1 1 6 6 6 0 Proteins of 100 residues with WXG Prefoldin_2 PF01920.15 gi|529043558|ref|YP_008369777.1| - 6.9 6.4 67.8 0.1 12.3 6.2 7.9 2 2 4 6 6 5 0 Prefoldin subunit FliD_N PF02465.13 gi|529043558|ref|YP_008369777.1| - 9 6.7 17.9 11 6.4 2.1 5.8 2 2 2 4 4 4 0 Flagellar hook-associated protein 2 N-terminus CbiA PF01656.18 gi|529043560|ref|YP_008369779.1| - 4.5e-27 94.7 0.0 6.3e-27 94.2 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|529043560|ref|YP_008369779.1| - 2e-09 37.5 0.0 3.2e-08 33.6 0.0 2.2 1 1 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|529043560|ref|YP_008369779.1| - 7.3e-07 28.5 0.2 0.00017 20.7 0.1 2.2 1 1 0 2 2 2 2 ATPase MipZ YhjQ PF06564.7 gi|529043560|ref|YP_008369779.1| - 0.00016 21.1 0.0 0.0003 20.2 0.0 1.4 1 1 0 1 1 1 1 YhjQ protein AAA_17 PF13207.1 gi|529043560|ref|YP_008369779.1| - 0.00049 20.9 1.0 0.0015 19.3 0.1 2.3 2 1 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|529043560|ref|YP_008369779.1| - 0.0017 17.8 0.0 0.0051 16.2 0.0 1.8 1 1 1 2 2 2 1 AAA-like domain ArsA_ATPase PF02374.10 gi|529043560|ref|YP_008369779.1| - 0.0045 16.0 0.0 0.012 14.6 0.0 1.7 2 0 0 2 2 2 1 Anion-transporting ATPase ATP_bind_1 PF03029.12 gi|529043560|ref|YP_008369779.1| - 0.0092 15.5 0.0 0.016 14.7 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein SRP54 PF00448.17 gi|529043560|ref|YP_008369779.1| - 0.011 15.1 0.0 0.023 14.1 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_16 PF13191.1 gi|529043560|ref|YP_008369779.1| - 0.012 15.6 0.2 0.022 14.7 0.2 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_18 PF13238.1 gi|529043560|ref|YP_008369779.1| - 0.025 14.8 0.5 0.051 13.8 0.1 1.9 2 1 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|529043560|ref|YP_008369779.1| - 0.053 12.9 0.0 0.1 11.9 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_14 PF13173.1 gi|529043560|ref|YP_008369779.1| - 0.083 12.7 0.0 0.19 11.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain Fer4_NifH PF00142.13 gi|529043560|ref|YP_008369779.1| - 0.083 12.0 0.0 0.15 11.1 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family NHase_alpha PF02979.11 gi|529043560|ref|YP_008369779.1| - 0.088 12.0 0.0 0.16 11.2 0.0 1.5 1 0 0 1 1 1 0 Nitrile hydratase, alpha chain AAA_25 PF13481.1 gi|529043560|ref|YP_008369779.1| - 0.13 11.6 0.2 0.42 9.9 0.2 2.0 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|529043560|ref|YP_008369779.1| - 0.28 10.7 1.2 0.58 9.7 0.8 1.6 1 1 0 1 1 1 0 AAA domain PDDEXK_1 PF12705.2 gi|529043561|ref|YP_008369780.1| - 1e-15 57.8 1.1 1.6e-15 57.2 0.2 1.7 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily UvrD-helicase PF00580.16 gi|529043562|ref|YP_008369781.1| - 1.9e-50 171.9 0.1 8.7e-50 169.7 0.1 2.0 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|529043562|ref|YP_008369781.1| - 4.8e-34 118.3 0.0 1.9e-18 67.0 0.0 2.3 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.1 gi|529043562|ref|YP_008369781.1| - 2.9e-15 55.7 0.1 2.6e-13 49.5 0.0 3.2 3 0 0 3 3 3 1 Part of AAA domain PDDEXK_1 PF12705.2 gi|529043562|ref|YP_008369781.1| - 1e-11 44.6 1.1 2.8e-11 43.2 0.1 2.2 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily UvrD_C_2 PF13538.1 gi|529043562|ref|YP_008369781.1| - 3.7e-08 33.4 0.1 0.018 15.1 0.0 2.8 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_30 PF13604.1 gi|529043562|ref|YP_008369781.1| - 1.5e-05 24.7 0.2 0.00012 21.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_12 PF13087.1 gi|529043562|ref|YP_008369781.1| - 0.00094 18.6 0.0 0.03 13.7 0.0 2.5 2 1 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.13 gi|529043562|ref|YP_008369781.1| - 0.0021 17.6 0.3 7.2 6.0 0.0 3.6 3 1 0 3 3 3 1 Viral (Superfamily 1) RNA helicase AAA_22 PF13401.1 gi|529043562|ref|YP_008369781.1| - 0.038 14.1 0.0 0.13 12.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain BRCA2 PF00634.13 gi|529043562|ref|YP_008369781.1| - 0.056 12.7 0.0 0.14 11.4 0.0 1.6 1 0 0 1 1 1 0 BRCA2 repeat PhoH PF02562.11 gi|529043562|ref|YP_008369781.1| - 0.066 12.4 0.0 11 5.1 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein Cas_Cas4 PF01930.12 gi|529043562|ref|YP_008369781.1| - 0.18 11.7 0.0 0.38 10.6 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function DUF83 DUF3090 PF11290.3 gi|529043563|ref|YP_008369782.1| - 0.049 13.0 0.0 0.34 10.3 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3090) DUF1045 PF06299.7 gi|529043563|ref|YP_008369782.1| - 0.074 12.7 0.1 0.2 11.3 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1045) Rsa3 PF14615.1 gi|529043563|ref|YP_008369782.1| - 0.1 11.9 0.0 0.2 10.9 0.0 1.5 1 0 0 1 1 1 0 Ribosome-assembly protein 3 DDE_Tnp_1 PF01609.16 gi|529043564|ref|YP_008369783.1| - 2.2e-08 33.9 0.0 3.4e-08 33.2 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|529043564|ref|YP_008369783.1| - 0.0018 18.2 0.0 0.0072 16.3 0.0 1.8 2 0 0 2 2 2 1 Transposase DDE domain CorA PF01544.13 gi|529043564|ref|YP_008369783.1| - 0.12 11.3 0.0 0.12 11.3 0.0 1.1 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF2411 PF10304.4 gi|529043564|ref|YP_008369783.1| - 0.33 10.5 0.1 0.33 10.5 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF2411) DDE_5 PF13546.1 gi|529043567|ref|YP_008369786.1| - 7.6e-16 57.7 0.0 1.3e-15 57.0 0.0 1.4 1 1 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.16 gi|529043567|ref|YP_008369786.1| - 0.00039 20.0 0.2 0.00061 19.4 0.1 1.4 1 0 0 1 1 1 1 Transposase DDE domain DNA_gyraseA_C PF03989.8 gi|529043568|ref|YP_008369787.1| - 2.5e-50 167.5 0.3 1.9e-13 49.5 0.0 6.3 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller Zw10 PF06248.8 gi|529043569|ref|YP_008369788.1| - 0.065 11.3 0.4 0.14 10.3 0.3 1.5 1 0 0 1 1 1 0 Centromere/kinetochore Zw10 ATP-synt_DE PF00401.15 gi|529043569|ref|YP_008369788.1| - 0.18 11.7 6.2 5.4 6.9 4.7 2.8 1 1 1 2 2 2 0 ATP synthase, Delta/Epsilon chain, long alpha-helix domain ResIII PF04851.10 gi|529043570|ref|YP_008369789.1| - 9.2e-22 77.7 0.0 1.7e-21 76.8 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|529043570|ref|YP_008369789.1| - 4.1e-13 48.9 0.5 8.6e-13 47.9 0.1 1.7 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|529043570|ref|YP_008369789.1| - 1.1e-12 47.7 0.0 2.6e-12 46.5 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase SNF2_N PF00176.18 gi|529043570|ref|YP_008369789.1| - 5.5e-08 31.9 0.0 1e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 SNF2 family N-terminal domain AAA_25 PF13481.1 gi|529043570|ref|YP_008369789.1| - 0.044 13.1 0.0 0.1 12.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|529043570|ref|YP_008369789.1| - 0.046 13.4 0.3 0.15 11.8 0.2 2.1 1 1 0 1 1 1 0 Part of AAA domain AAA_22 PF13401.1 gi|529043570|ref|YP_008369789.1| - 0.052 13.6 0.1 0.38 10.8 0.0 2.4 2 1 0 2 2 2 0 AAA domain AAA_11 PF13086.1 gi|529043570|ref|YP_008369789.1| - 0.12 11.9 0.0 0.28 10.7 0.0 1.9 1 1 0 1 1 1 0 AAA domain DDE_Tnp_IS66 PF03050.9 gi|529043571|ref|YP_008369790.1| - 1e-52 179.0 0.0 1e-52 179.0 0.0 1.6 2 0 0 2 2 2 1 Transposase IS66 family GAS PF13851.1 gi|529043571|ref|YP_008369790.1| - 0.0051 16.0 3.9 0.009 15.2 2.7 1.3 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding Transposase_mut PF00872.13 gi|529043571|ref|YP_008369790.1| - 0.006 15.1 0.0 0.012 14.2 0.0 1.4 1 0 0 1 1 1 1 Transposase, Mutator family TMF_TATA_bd PF12325.3 gi|529043571|ref|YP_008369790.1| - 0.0062 16.2 9.2 0.016 14.9 6.4 1.6 1 0 0 1 1 1 1 TATA element modulatory factor 1 TATA binding bZIP_1 PF00170.16 gi|529043571|ref|YP_008369790.1| - 0.0072 16.2 4.8 0.018 15.0 3.3 1.7 1 0 0 1 1 1 1 bZIP transcription factor CENP-F_leu_zip PF10473.4 gi|529043571|ref|YP_008369790.1| - 0.017 14.9 7.3 0.047 13.5 5.0 1.7 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Shugoshin_N PF07558.6 gi|529043571|ref|YP_008369790.1| - 0.021 14.5 1.3 0.048 13.3 0.9 1.6 1 0 0 1 1 1 0 Shugoshin N-terminal coiled-coil region DASH_Spc34 PF08657.5 gi|529043571|ref|YP_008369790.1| - 0.027 14.1 3.6 0.056 13.0 2.5 1.4 1 0 0 1 1 1 0 DASH complex subunit Spc34 IncA PF04156.9 gi|529043571|ref|YP_008369790.1| - 0.038 13.5 3.7 0.087 12.4 2.6 1.5 1 0 0 1 1 1 0 IncA protein SOUL PF04832.7 gi|529043571|ref|YP_008369790.1| - 0.055 13.0 0.2 0.1 12.1 0.1 1.4 1 0 0 1 1 1 0 SOUL heme-binding protein TBPIP PF07106.8 gi|529043571|ref|YP_008369790.1| - 0.059 12.9 1.9 0.14 11.6 1.3 1.6 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) CBF_beta PF02312.12 gi|529043571|ref|YP_008369790.1| - 0.073 12.6 2.5 0.13 11.8 1.7 1.3 1 0 0 1 1 1 0 Core binding factor beta subunit DUF869 PF05911.6 gi|529043571|ref|YP_008369790.1| - 0.079 11.1 2.8 0.11 10.7 1.9 1.1 1 0 0 1 1 1 0 Plant protein of unknown function (DUF869) MCC-bdg_PDZ PF10506.4 gi|529043571|ref|YP_008369790.1| - 0.081 12.7 3.9 0.19 11.5 2.7 1.7 1 0 0 1 1 1 0 PDZ domain of MCC-2 bdg protein for Usher syndrome DUF2681 PF10883.3 gi|529043571|ref|YP_008369790.1| - 0.11 12.7 1.3 0.34 11.1 0.9 1.8 2 0 0 2 2 1 0 Protein of unknown function (DUF2681) DUF972 PF06156.8 gi|529043571|ref|YP_008369790.1| - 0.12 12.7 3.8 0.11 12.8 1.4 1.7 2 0 0 2 2 1 0 Protein of unknown function (DUF972) DUF3584 PF12128.3 gi|529043571|ref|YP_008369790.1| - 0.17 9.1 3.3 0.24 8.6 2.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) CtIP_N PF10482.4 gi|529043571|ref|YP_008369790.1| - 0.24 11.2 8.5 0.17 11.6 4.2 2.0 2 0 0 2 2 2 0 Tumour-suppressor protein CtIP N-terminal domain V_ATPase_I PF01496.14 gi|529043571|ref|YP_008369790.1| - 0.34 8.6 2.5 0.48 8.2 1.8 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family UPF0547 PF10571.4 gi|529043571|ref|YP_008369790.1| - 0.36 10.5 2.8 0.57 9.9 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Daxx PF03344.10 gi|529043571|ref|YP_008369790.1| - 0.37 9.2 7.2 0.57 8.6 5.0 1.1 1 0 0 1 1 1 0 Daxx Family TMF_DNA_bd PF12329.3 gi|529043571|ref|YP_008369790.1| - 0.53 10.1 8.2 0.24 11.2 2.0 2.2 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding DivIC PF04977.10 gi|529043571|ref|YP_008369790.1| - 0.58 9.6 7.7 0.15 11.5 2.4 2.2 2 0 0 2 2 2 0 Septum formation initiator DDE_Tnp_IS240 PF13610.1 gi|529043571|ref|YP_008369790.1| - 0.59 10.0 2.8 0.44 10.4 0.1 2.2 2 1 0 2 2 2 0 DDE domain APG6 PF04111.7 gi|529043571|ref|YP_008369790.1| - 1.4 7.9 4.5 2.3 7.1 3.1 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 zf-IS66 PF13005.2 gi|529043571|ref|YP_008369790.1| - 4.8 7.2 13.2 0.093 12.7 3.8 2.2 2 0 0 2 2 1 0 zinc-finger binding domain of transposase IS66 bZIP_2 PF07716.10 gi|529043571|ref|YP_008369790.1| - 5.4 6.9 12.9 0.33 10.8 4.6 2.3 2 1 1 3 3 2 0 Basic region leucine zipper AAA_23 PF13476.1 gi|529043572|ref|YP_008369791.1| - 4.4e-21 76.1 28.8 4.4e-21 76.1 20.0 3.9 2 2 0 2 2 1 1 AAA domain AAA_13 PF13166.1 gi|529043572|ref|YP_008369791.1| - 1.5e-07 30.3 38.2 2.6e-05 22.9 7.2 3.7 3 1 0 3 3 3 2 AAA domain SMC_N PF02463.14 gi|529043572|ref|YP_008369791.1| - 1.6e-07 30.8 0.0 1.6e-07 30.8 0.0 2.9 2 1 0 2 2 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|529043572|ref|YP_008369791.1| - 5.8e-07 28.9 0.0 1.3e-06 27.8 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF4201 PF13870.1 gi|529043572|ref|YP_008369791.1| - 0.00019 20.9 16.5 0.00019 20.9 11.4 3.1 2 1 1 3 3 3 1 Domain of unknown function (DUF4201) ABC_tran PF00005.22 gi|529043572|ref|YP_008369791.1| - 0.00025 21.3 0.0 0.00025 21.3 0.0 3.8 3 1 0 3 3 2 1 ABC transporter AAA_21 PF13304.1 gi|529043572|ref|YP_008369791.1| - 0.00028 20.9 6.8 0.02 14.8 0.0 3.3 2 1 0 2 2 2 1 AAA domain MukB PF04310.7 gi|529043572|ref|YP_008369791.1| - 0.0013 18.1 0.3 0.0036 16.6 0.0 1.9 2 0 0 2 2 2 1 MukB N-terminal DUF258 PF03193.11 gi|529043572|ref|YP_008369791.1| - 0.0045 16.1 0.0 0.014 14.5 0.0 1.8 1 0 0 1 1 1 1 Protein of unknown function, DUF258 MMR_HSR1 PF01926.18 gi|529043572|ref|YP_008369791.1| - 0.023 14.6 0.5 0.15 11.9 0.0 2.6 2 1 0 3 3 3 0 50S ribosome-binding GTPase V_ATPase_I PF01496.14 gi|529043572|ref|YP_008369791.1| - 0.063 11.1 34.1 0.048 11.5 10.6 2.2 2 0 0 2 2 2 0 V-type ATPase 116kDa subunit family FtsK_SpoIIIE PF01580.13 gi|529043572|ref|YP_008369791.1| - 0.17 11.3 0.0 0.17 11.3 0.0 3.5 2 1 1 3 3 2 0 FtsK/SpoIIIE family Tropomyosin_1 PF12718.2 gi|529043572|ref|YP_008369791.1| - 0.55 10.0 65.6 0.49 10.2 1.6 4.0 2 2 1 3 3 3 0 Tropomyosin like Mnd1 PF03962.10 gi|529043572|ref|YP_008369791.1| - 0.89 9.1 49.1 0.55 9.8 13.2 3.4 2 1 1 3 3 3 0 Mnd1 family DUF4407 PF14362.1 gi|529043572|ref|YP_008369791.1| - 1.8 7.4 30.9 2.4 7.0 12.9 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) GAS PF13851.1 gi|529043572|ref|YP_008369791.1| - 2.5 7.2 46.5 0.12 11.5 8.0 3.2 2 1 0 2 2 2 0 Growth-arrest specific micro-tubule binding ERM PF00769.14 gi|529043572|ref|YP_008369791.1| - 3.1 7.2 58.1 2.1 7.8 23.7 2.6 2 1 0 2 2 2 0 Ezrin/radixin/moesin family AAA_27 PF13514.1 gi|529043572|ref|YP_008369791.1| - 4.6 4.8 51.5 3.2 5.3 0.0 3.5 3 1 0 3 3 3 0 AAA domain DUF342 PF03961.8 gi|529043572|ref|YP_008369791.1| - 4.8 5.4 39.4 1.8 6.9 8.2 3.1 2 1 2 4 4 4 0 Protein of unknown function (DUF342) DUF812 PF05667.6 gi|529043572|ref|YP_008369791.1| - 5.8 5.3 42.9 0.046 12.2 5.2 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF812) AAA_16 PF13191.1 gi|529043572|ref|YP_008369791.1| - 7.9 6.4 17.1 0.55 10.2 0.4 4.4 1 1 1 2 2 1 0 AAA ATPase domain Borrelia_P83 PF05262.6 gi|529043572|ref|YP_008369791.1| - 9 4.4 40.9 0.088 11.0 14.1 2.1 2 0 0 2 2 2 0 Borrelia P83/100 protein DUF3578 PF12102.3 gi|529043574|ref|YP_008369793.1| - 2.1e-28 99.1 0.0 3.8e-28 98.3 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3578) AAA_5 PF07728.9 gi|529043574|ref|YP_008369793.1| - 2.3e-12 46.8 0.0 4.8e-12 45.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|529043574|ref|YP_008369793.1| - 6.4e-06 26.2 0.5 7.2e-05 22.8 0.0 2.9 3 1 0 3 3 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|529043574|ref|YP_008369793.1| - 3e-05 24.1 0.0 0.00016 21.8 0.0 2.3 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|529043574|ref|YP_008369793.1| - 0.0003 20.0 0.0 0.00051 19.2 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_19 PF13245.1 gi|529043574|ref|YP_008369793.1| - 0.00044 19.9 0.0 0.0012 18.5 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA PF00004.24 gi|529043574|ref|YP_008369793.1| - 0.00058 20.0 0.0 0.0013 18.9 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.1 gi|529043574|ref|YP_008369793.1| - 0.00062 19.8 0.0 0.0016 18.4 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_30 PF13604.1 gi|529043574|ref|YP_008369793.1| - 0.00096 18.7 0.0 0.0052 16.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_3 PF07726.6 gi|529043574|ref|YP_008369793.1| - 0.00099 18.7 0.0 0.98 9.0 0.0 3.3 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|529043574|ref|YP_008369793.1| - 0.0013 19.5 0.0 0.0097 16.7 0.0 2.5 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|529043574|ref|YP_008369793.1| - 0.002 17.5 0.0 0.0077 15.6 0.0 1.8 2 0 0 2 2 2 1 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|529043574|ref|YP_008369793.1| - 0.0031 17.6 0.0 0.026 14.6 0.0 2.2 2 0 0 2 2 2 1 RNA helicase ABC_tran PF00005.22 gi|529043574|ref|YP_008369793.1| - 0.0049 17.1 0.0 0.013 15.8 0.0 1.8 1 1 0 1 1 1 1 ABC transporter AAA_28 PF13521.1 gi|529043574|ref|YP_008369793.1| - 0.025 14.5 0.4 0.26 11.2 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|529043574|ref|YP_008369793.1| - 0.027 14.3 0.0 0.07 12.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain Sigma54_activat PF00158.21 gi|529043574|ref|YP_008369793.1| - 0.041 13.3 0.0 0.099 12.1 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_25 PF13481.1 gi|529043574|ref|YP_008369793.1| - 0.062 12.6 0.1 0.21 10.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|529043574|ref|YP_008369793.1| - 0.11 12.1 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 NTPase AAA_18 PF13238.1 gi|529043574|ref|YP_008369793.1| - 0.13 12.5 0.0 0.34 11.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.1 gi|529043574|ref|YP_008369793.1| - 0.16 11.4 0.0 0.25 10.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|529043574|ref|YP_008369793.1| - 0.21 11.5 0.0 0.39 10.6 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase RuvB_N PF05496.7 gi|529043574|ref|YP_008369793.1| - 0.21 10.6 0.0 0.41 9.6 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus McrBC PF10117.4 gi|529043575|ref|YP_008369794.1| - 1.4e-05 24.1 0.5 0.00072 18.5 0.7 2.3 2 1 0 2 2 2 1 McrBC 5-methylcytosine restriction system component DUF2357 PF09823.4 gi|529043575|ref|YP_008369794.1| - 0.029 13.4 0.2 0.056 12.5 0.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF2357) TRI5 PF06330.6 gi|529043575|ref|YP_008369794.1| - 0.065 11.8 0.1 0.12 10.9 0.1 1.4 1 0 0 1 1 1 0 Trichodiene synthase (TRI5) DDE_Tnp_IS66 PF03050.9 gi|529043576|ref|YP_008369795.1| - 2.2e-53 181.2 0.2 3.7e-53 180.4 0.1 1.3 1 0 0 1 1 1 1 Transposase IS66 family zf-IS66 PF13005.2 gi|529043576|ref|YP_008369795.1| - 0.00043 20.1 6.0 0.00043 20.1 4.2 2.2 2 0 0 2 2 2 1 zinc-finger binding domain of transposase IS66 Transposase_mut PF00872.13 gi|529043576|ref|YP_008369795.1| - 0.014 13.9 0.1 0.026 13.1 0.0 1.3 1 0 0 1 1 1 0 Transposase, Mutator family DASH_Spc34 PF08657.5 gi|529043576|ref|YP_008369795.1| - 0.014 15.0 0.6 0.026 14.1 0.4 1.4 1 0 0 1 1 1 0 DASH complex subunit Spc34 DZR PF12773.2 gi|529043576|ref|YP_008369795.1| - 0.016 15.0 2.9 0.038 13.8 2.0 1.6 1 0 0 1 1 1 0 Double zinc ribbon CCDC-167 PF15188.1 gi|529043576|ref|YP_008369795.1| - 0.018 14.9 1.1 0.046 13.6 0.8 1.7 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 167 Med4 PF10018.4 gi|529043576|ref|YP_008369795.1| - 0.034 13.5 0.9 0.066 12.5 0.4 1.6 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 Tropomyosin_1 PF12718.2 gi|529043576|ref|YP_008369795.1| - 0.08 12.7 5.2 0.17 11.7 3.6 1.5 1 0 0 1 1 1 0 Tropomyosin like DivIC PF04977.10 gi|529043576|ref|YP_008369795.1| - 0.081 12.4 4.7 0.069 12.6 1.3 2.2 2 0 0 2 2 2 0 Septum formation initiator XhlA PF10779.4 gi|529043576|ref|YP_008369795.1| - 0.11 12.4 2.9 0.31 10.9 2.0 1.7 1 0 0 1 1 1 0 Haemolysin XhlA SlyX PF04102.7 gi|529043576|ref|YP_008369795.1| - 0.12 12.7 3.6 0.35 11.2 2.5 1.8 1 0 0 1 1 1 0 SlyX ERM PF00769.14 gi|529043576|ref|YP_008369795.1| - 0.16 11.4 5.1 0.41 10.1 3.5 1.7 1 0 0 1 1 1 0 Ezrin/radixin/moesin family Atg14 PF10186.4 gi|529043576|ref|YP_008369795.1| - 0.18 10.7 0.7 0.32 9.9 0.5 1.4 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Med9 PF07544.8 gi|529043576|ref|YP_008369795.1| - 0.24 11.1 2.8 0.64 9.7 1.9 1.7 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 Prefoldin_2 PF01920.15 gi|529043576|ref|YP_008369795.1| - 0.24 11.1 6.1 0.65 9.7 4.2 1.7 1 0 0 1 1 1 0 Prefoldin subunit HSBP1 PF06825.7 gi|529043576|ref|YP_008369795.1| - 0.25 10.9 5.5 5.9 6.5 3.8 2.4 1 1 0 1 1 1 0 Heat shock factor binding protein 1 DDE_Tnp_IS240 PF13610.1 gi|529043576|ref|YP_008369795.1| - 0.3 11.0 1.4 0.42 10.5 0.1 1.9 2 1 0 2 2 1 0 DDE domain IncA PF04156.9 gi|529043576|ref|YP_008369795.1| - 0.47 10.0 4.6 0.2 11.2 1.4 1.6 2 0 0 2 2 1 0 IncA protein zf-FPG_IleRS PF06827.9 gi|529043576|ref|YP_008369795.1| - 0.47 10.1 4.3 13 5.5 0.1 3.2 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS UPF0449 PF15136.1 gi|529043576|ref|YP_008369795.1| - 1.7 8.8 9.1 0.83 9.8 1.2 2.7 3 0 0 3 3 2 0 Uncharacterised protein family UPF0449 Sugarporin_N PF11471.3 gi|529043576|ref|YP_008369795.1| - 2 8.1 9.5 3.9 7.2 6.6 1.5 1 0 0 1 1 1 0 Maltoporin periplasmic N-terminal extension Zn-ribbon_8 PF09723.5 gi|529043576|ref|YP_008369795.1| - 2.8 7.9 6.1 21 5.1 0.4 2.7 2 0 0 2 2 2 0 Zinc ribbon domain MethyltransfD12 PF02086.10 gi|529043577|ref|YP_008369796.1| - 6.2e-52 176.6 0.7 7.9e-52 176.2 0.5 1.1 1 0 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_26 PF13659.1 gi|529043577|ref|YP_008369796.1| - 0.0011 18.9 0.0 0.0026 17.7 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Sialidase_penC PF12135.3 gi|529043577|ref|YP_008369796.1| - 0.19 11.3 2.3 1.6 8.4 0.2 2.8 3 0 0 3 3 3 0 Sialidase enzyme penultimate C terminal domain HATPase_c_3 PF13589.1 gi|529043578|ref|YP_008369797.1| - 3.3e-20 72.1 0.0 7.3e-20 71.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.21 gi|529043578|ref|YP_008369797.1| - 1.3e-07 31.3 0.0 3e-07 30.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|529043578|ref|YP_008369797.1| - 0.14 11.9 0.0 0.61 9.8 0.0 2.0 2 0 0 2 2 2 0 GHKL domain DDE_Tnp_1 PF01609.16 gi|529043582|ref|YP_008369801.1| - 3.7e-24 85.4 0.1 4.8e-24 85.0 0.1 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|529043582|ref|YP_008369801.1| - 0.0085 15.1 0.0 0.012 14.6 0.0 1.1 1 0 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_2 PF13586.1 gi|529043582|ref|YP_008369801.1| - 0.033 14.3 0.0 0.065 13.4 0.0 1.5 1 0 0 1 1 1 0 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|529043583|ref|YP_008369802.1| - 1e-14 54.5 1.5 1.8e-14 53.8 1.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|529043583|ref|YP_008369802.1| - 0.0018 18.4 3.7 0.0029 17.7 0.2 2.4 2 1 0 2 2 2 1 Transposase DDE domain AAA_15 PF13175.1 gi|529043584|ref|YP_008369803.1| - 9.9e-24 84.1 0.8 3.6e-16 59.2 0.0 2.8 3 1 0 3 3 3 2 AAA ATPase domain AAA_21 PF13304.1 gi|529043584|ref|YP_008369803.1| - 9.5e-18 65.1 6.7 3.2e-13 50.3 0.4 2.9 3 0 0 3 3 3 2 AAA domain SMC_N PF02463.14 gi|529043584|ref|YP_008369803.1| - 2.2e-06 27.0 0.0 0.00011 21.5 0.0 2.3 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|529043584|ref|YP_008369803.1| - 3.9e-05 24.0 0.2 0.0027 18.0 0.0 2.8 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|529043584|ref|YP_008369803.1| - 0.00018 20.9 0.0 0.00037 19.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF2813 PF11398.3 gi|529043584|ref|YP_008369803.1| - 0.066 12.2 0.0 3 6.8 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2813) NYD-SP28 PF14772.1 gi|529043584|ref|YP_008369803.1| - 0.11 12.5 5.2 0.57 10.2 1.1 2.9 3 0 0 3 3 3 0 Sperm tail AIPR PF10592.4 gi|529043585|ref|YP_008369804.1| - 6.3e-19 68.4 1.0 1.4e-18 67.2 0.6 1.6 2 0 0 2 2 2 1 AIPR protein HTH_23 PF13384.1 gi|529043589|ref|YP_008369808.1| - 0.01 15.4 0.0 0.016 14.8 0.0 1.2 1 0 0 1 1 1 0 Homeodomain-like domain RepB PF07506.6 gi|529043589|ref|YP_008369808.1| - 0.097 12.5 0.0 0.11 12.3 0.0 1.1 1 0 0 1 1 1 0 RepB plasmid partitioning protein HTH_Tnp_ISL3 PF13542.1 gi|529043589|ref|YP_008369808.1| - 0.11 11.6 0.0 0.17 11.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Methyltransf_31 PF13847.1 gi|529043591|ref|YP_008369810.1| - 3.4e-22 78.6 0.0 4.6e-22 78.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|529043591|ref|YP_008369810.1| - 3.6e-22 78.6 0.0 5.4e-22 78.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|529043591|ref|YP_008369810.1| - 7.7e-17 61.8 0.0 1.3e-16 61.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|529043591|ref|YP_008369810.1| - 9.2e-17 61.2 0.1 1.2e-16 60.8 0.1 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|529043591|ref|YP_008369810.1| - 1.6e-16 60.1 0.0 2e-16 59.8 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|529043591|ref|YP_008369810.1| - 2.2e-11 43.8 0.2 8.7e-11 41.8 0.2 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|529043591|ref|YP_008369810.1| - 3.2e-11 43.5 0.0 5e-11 42.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|529043591|ref|YP_008369810.1| - 2.6e-10 40.5 0.0 3.9e-10 39.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|529043591|ref|YP_008369810.1| - 4.9e-08 32.5 0.0 7.4e-08 31.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_32 PF13679.1 gi|529043591|ref|YP_008369810.1| - 1.5e-05 24.7 0.0 2.2e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|529043591|ref|YP_008369810.1| - 4.3e-05 22.7 0.0 5.7e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB PCMT PF01135.14 gi|529043591|ref|YP_008369810.1| - 0.00012 21.7 0.0 0.00019 21.0 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TPMT PF05724.6 gi|529043591|ref|YP_008369810.1| - 0.00046 19.6 0.0 0.00071 19.0 0.0 1.4 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) PrmA PF06325.8 gi|529043591|ref|YP_008369810.1| - 0.00077 18.6 0.0 0.00093 18.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) DREV PF05219.7 gi|529043591|ref|YP_008369810.1| - 0.00084 18.2 0.0 0.0011 17.8 0.0 1.1 1 0 0 1 1 1 1 DREV methyltransferase CMAS PF02353.15 gi|529043591|ref|YP_008369810.1| - 0.0019 17.3 0.0 0.0026 16.8 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MetW PF07021.7 gi|529043591|ref|YP_008369810.1| - 0.0019 17.5 0.0 0.0028 17.0 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW UPF0020 PF01170.13 gi|529043591|ref|YP_008369810.1| - 0.0031 17.1 0.0 0.0047 16.5 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 RrnaAD PF00398.15 gi|529043591|ref|YP_008369810.1| - 0.011 14.8 0.0 0.014 14.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_4 PF02390.12 gi|529043591|ref|YP_008369810.1| - 0.012 14.6 0.0 0.021 13.8 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase GidB PF02527.10 gi|529043591|ref|YP_008369810.1| - 0.031 13.4 0.0 0.13 11.3 0.0 1.8 1 1 0 1 1 1 0 rRNA small subunit methyltransferase G Methyltransf_9 PF08003.6 gi|529043591|ref|YP_008369810.1| - 0.045 12.4 0.0 0.058 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Methyltransf_29 PF03141.11 gi|529043591|ref|YP_008369810.1| - 0.059 11.6 0.0 0.073 11.3 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase AdoMet_MTase PF07757.8 gi|529043591|ref|YP_008369810.1| - 0.081 13.0 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase FmrO PF07091.6 gi|529043591|ref|YP_008369810.1| - 0.091 11.7 0.0 0.14 11.1 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) NodS PF05401.6 gi|529043591|ref|YP_008369810.1| - 0.095 12.0 0.0 0.12 11.7 0.0 1.1 1 0 0 1 1 1 0 Nodulation protein S (NodS) DUF159 PF02586.9 gi|529043592|ref|YP_008369811.1| - 1.6e-56 191.1 0.0 1.8e-56 190.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ACR, COG2135 DUF1052 PF06319.7 gi|529043595|ref|YP_008369814.1| - 0.038 13.2 0.0 0.098 11.9 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1052) DUF1272 PF06906.6 gi|529043595|ref|YP_008369814.1| - 0.039 13.8 0.5 0.073 12.9 0.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) HypA PF01155.14 gi|529043595|ref|YP_008369814.1| - 0.071 12.8 0.5 0.13 11.9 0.3 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family NERD PF08378.6 gi|529043595|ref|YP_008369814.1| - 0.15 12.3 0.0 0.38 11.0 0.0 1.6 1 0 0 1 1 1 0 Nuclease-related domain DDE_Tnp_1 PF01609.16 gi|529043597|ref|YP_008369816.1| - 0.00067 19.2 0.1 0.0029 17.1 0.0 2.0 2 1 0 2 2 2 1 Transposase DDE domain DUF1863 PF08937.6 gi|529043598|ref|YP_008369817.1| - 1.7e-15 57.1 0.1 1.8e-14 53.8 0.0 1.9 2 0 0 2 2 2 1 MTH538 TIR-like domain (DUF1863) TIR_2 PF13676.1 gi|529043598|ref|YP_008369817.1| - 0.0031 17.6 0.0 0.0051 16.9 0.0 1.4 1 0 0 1 1 1 1 TIR domain DDE_Tnp_1 PF01609.16 gi|529043600|ref|YP_008369819.1| - 3.3e-08 33.3 0.0 5.7e-08 32.5 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain CorA PF01544.13 gi|529043603|ref|YP_008369822.1| - 0.012 14.7 1.5 0.013 14.5 1.1 1.0 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein HXXSHH PF07586.6 gi|529043603|ref|YP_008369822.1| - 0.019 13.9 3.7 0.87 8.4 0.6 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1552) Laminin_I PF06008.9 gi|529043603|ref|YP_008369822.1| - 0.021 14.1 4.3 0.024 13.9 3.0 1.1 1 0 0 1 1 1 0 Laminin Domain I Sugarporin_N PF11471.3 gi|529043603|ref|YP_008369822.1| - 0.038 13.6 0.9 0.072 12.7 0.6 1.5 1 0 0 1 1 1 0 Maltoporin periplasmic N-terminal extension MutL_C PF08676.6 gi|529043603|ref|YP_008369822.1| - 0.086 12.4 0.2 0.11 12.1 0.2 1.2 1 0 0 1 1 1 0 MutL C terminal dimerisation domain Herpes_UL14 PF03580.9 gi|529043603|ref|YP_008369822.1| - 0.11 12.2 5.4 0.96 9.2 1.4 2.3 2 1 0 2 2 2 0 Herpesvirus UL14-like protein Complex1_LYR_2 PF13233.1 gi|529043603|ref|YP_008369822.1| - 0.17 12.3 1.2 0.23 11.9 0.8 1.1 1 0 0 1 1 1 0 Complex1_LYR-like DNA_pol_B PF00136.16 gi|529043605|ref|YP_008369824.1| - 1.2e-40 139.6 0.0 2.4e-40 138.7 0.0 1.4 1 1 0 1 1 1 1 DNA polymerase family B Glycos_transf_N PF04413.11 gi|529043605|ref|YP_008369824.1| - 0.0033 16.6 0.0 0.0063 15.6 0.0 1.3 1 0 0 1 1 1 1 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Cdc6_C PF09079.6 gi|529043606|ref|YP_008369825.1| - 1.3e-14 53.7 0.1 2.5e-14 52.7 0.0 1.5 1 0 0 1 1 1 1 CDC6, C terminal AAA_22 PF13401.1 gi|529043606|ref|YP_008369825.1| - 2e-13 50.6 0.0 4.5e-13 49.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|529043606|ref|YP_008369825.1| - 9.5e-11 42.0 1.2 2.6e-10 40.5 0.1 2.1 2 1 0 2 2 2 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|529043606|ref|YP_008369825.1| - 2.3e-06 27.4 0.0 4.3e-06 26.5 0.0 1.5 1 0 0 1 1 1 1 Archaeal ATPase AAA_5 PF07728.9 gi|529043606|ref|YP_008369825.1| - 0.00013 21.6 0.0 0.00055 19.6 0.0 2.2 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|529043606|ref|YP_008369825.1| - 0.0003 20.2 0.0 0.00055 19.4 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain DUF815 PF05673.8 gi|529043606|ref|YP_008369825.1| - 0.00065 18.7 0.0 0.0011 18.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) RNA_helicase PF00910.17 gi|529043606|ref|YP_008369825.1| - 0.0018 18.4 0.0 0.037 14.1 0.0 2.6 1 1 0 1 1 1 1 RNA helicase DUF2791 PF10923.3 gi|529043606|ref|YP_008369825.1| - 0.0039 15.8 0.1 0.043 12.4 0.0 2.1 2 0 0 2 2 2 1 P-loop Domain of unknown function (DUF2791) AAA_14 PF13173.1 gi|529043606|ref|YP_008369825.1| - 0.013 15.3 0.0 0.054 13.3 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_32 PF13654.1 gi|529043606|ref|YP_008369825.1| - 0.029 13.0 0.3 1.4 7.5 0.1 2.1 2 0 0 2 2 2 0 AAA domain ResIII PF04851.10 gi|529043606|ref|YP_008369825.1| - 0.046 13.5 0.1 0.51 10.1 0.0 2.7 3 0 0 3 3 3 0 Type III restriction enzyme, res subunit AAA PF00004.24 gi|529043606|ref|YP_008369825.1| - 0.049 13.8 0.9 0.21 11.7 0.1 2.5 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.1 gi|529043606|ref|YP_008369825.1| - 0.051 13.6 0.0 0.14 12.2 0.0 1.7 2 0 0 2 2 1 0 Sigma-54 interaction domain NB-ARC PF00931.17 gi|529043606|ref|YP_008369825.1| - 0.052 12.3 0.0 0.073 11.9 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_18 PF13238.1 gi|529043606|ref|YP_008369825.1| - 0.059 13.6 0.0 0.18 12.1 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|529043606|ref|YP_008369825.1| - 0.061 14.1 4.5 1.1 10.0 3.3 2.8 1 1 0 1 1 1 0 AAA domain Adeno_IVa2 PF02456.10 gi|529043606|ref|YP_008369825.1| - 0.065 11.8 0.0 0.099 11.2 0.0 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA_25 PF13481.1 gi|529043606|ref|YP_008369825.1| - 0.07 12.5 0.1 2.9 7.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain PIF1 PF05970.9 gi|529043606|ref|YP_008369825.1| - 0.1 11.5 0.0 0.19 10.6 0.0 1.4 1 0 0 1 1 1 0 PIF1-like helicase NACHT PF05729.7 gi|529043606|ref|YP_008369825.1| - 0.11 12.1 0.0 0.2 11.2 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Torsin PF06309.6 gi|529043606|ref|YP_008369825.1| - 0.12 12.2 0.0 0.39 10.6 0.0 1.8 2 0 0 2 2 2 0 Torsin Mg_chelatase_2 PF13335.1 gi|529043606|ref|YP_008369825.1| - 0.29 11.5 3.6 0.68 10.3 0.6 2.5 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI MarR_2 PF12802.2 gi|529043608|ref|YP_008369827.1| - 6.3e-17 60.9 3.0 1e-09 37.9 0.8 2.7 2 0 0 2 2 2 2 MarR family TrmB PF01978.14 gi|529043608|ref|YP_008369827.1| - 3.7e-10 39.3 0.2 0.00047 19.7 0.0 2.6 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|529043608|ref|YP_008369827.1| - 1.3e-08 34.4 0.0 0.001 18.7 0.0 2.5 2 0 0 2 2 2 2 MarR family HTH_IclR PF09339.5 gi|529043608|ref|YP_008369827.1| - 4.3e-08 32.6 0.0 0.0038 16.7 0.0 2.7 2 0 0 2 2 2 2 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|529043608|ref|YP_008369827.1| - 6.1e-08 32.8 0.7 2.4e-05 24.5 0.3 2.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|529043608|ref|YP_008369827.1| - 1.1e-07 31.0 0.0 0.013 14.8 0.0 2.5 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|529043608|ref|YP_008369827.1| - 1.2e-07 31.7 0.0 0.017 15.2 0.0 2.4 2 0 0 2 2 2 2 Transcriptional regulator HTH_29 PF13551.1 gi|529043608|ref|YP_008369827.1| - 4.5e-07 29.9 0.5 0.024 14.7 0.0 2.4 1 1 1 2 2 2 2 Winged helix-turn helix HTH_20 PF12840.2 gi|529043608|ref|YP_008369827.1| - 1.6e-06 27.8 0.2 0.032 14.0 0.1 2.6 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_23 PF13384.1 gi|529043608|ref|YP_008369827.1| - 1.9e-06 27.3 0.1 0.005 16.4 0.0 2.7 2 0 0 2 2 2 2 Homeodomain-like domain HTH_38 PF13936.1 gi|529043608|ref|YP_008369827.1| - 1.3e-05 24.6 0.0 0.22 11.0 0.0 2.9 3 0 0 3 3 2 2 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|529043608|ref|YP_008369827.1| - 0.00015 21.4 0.1 0.21 11.3 0.0 2.7 2 1 0 2 2 2 2 Crp-like helix-turn-helix domain GntR PF00392.16 gi|529043608|ref|YP_008369827.1| - 0.00025 20.4 0.2 1.1 8.7 0.0 2.8 3 0 0 3 3 3 2 Bacterial regulatory proteins, gntR family HTH_41 PF14502.1 gi|529043608|ref|YP_008369827.1| - 0.00032 20.2 0.0 0.003 17.1 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|529043608|ref|YP_008369827.1| - 0.00033 20.2 0.0 0.36 10.5 0.0 2.6 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family GPP34 PF05719.6 gi|529043608|ref|YP_008369827.1| - 0.0015 18.6 0.6 0.0026 17.8 0.4 1.4 1 0 0 1 1 1 1 Golgi phosphoprotein 3 (GPP34) Penicillinase_R PF03965.11 gi|529043608|ref|YP_008369827.1| - 0.0018 18.3 0.0 2.7 8.1 0.0 2.3 2 0 0 2 2 2 2 Penicillinase repressor HTH_28 PF13518.1 gi|529043608|ref|YP_008369827.1| - 0.0025 17.7 0.1 0.2 11.6 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain Crp PF00325.15 gi|529043608|ref|YP_008369827.1| - 0.0029 17.0 0.9 0.0092 15.4 0.3 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, crp family RPA_C PF08784.6 gi|529043608|ref|YP_008369827.1| - 0.0082 16.5 0.0 0.019 15.3 0.0 1.6 1 0 0 1 1 1 1 Replication protein A C terminal DUF746 PF05344.6 gi|529043608|ref|YP_008369827.1| - 0.0086 15.5 0.0 0.068 12.7 0.0 2.3 2 0 0 2 2 2 1 Domain of Unknown Function (DUF746) Sigma70_r4 PF04545.11 gi|529043608|ref|YP_008369827.1| - 0.0099 15.1 0.1 1.7 8.0 0.0 2.5 2 0 0 2 2 2 1 Sigma-70, region 4 LZ_Tnp_IS481 PF13011.1 gi|529043608|ref|YP_008369827.1| - 0.012 15.9 0.0 0.027 14.7 0.0 1.5 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 HTH_36 PF13730.1 gi|529043608|ref|YP_008369827.1| - 0.017 15.2 0.0 0.84 9.8 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_11 PF08279.7 gi|529043608|ref|YP_008369827.1| - 0.027 14.1 0.1 1.5 8.5 0.0 2.5 2 0 0 2 2 2 0 HTH domain Phage_rep_org_N PF09681.5 gi|529043608|ref|YP_008369827.1| - 0.038 13.5 0.0 5.5 6.5 0.0 2.3 2 0 0 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) PaaX PF07848.7 gi|529043608|ref|YP_008369827.1| - 0.1 12.6 0.1 0.38 10.7 0.1 2.0 1 0 0 1 1 1 0 PaaX-like protein HTH_Tnp_Tc3_1 PF11427.3 gi|529043608|ref|YP_008369827.1| - 0.12 12.0 0.4 16 5.2 0.0 3.1 3 0 0 3 3 3 0 Tc3 transposase PIN PF01850.16 gi|529043609|ref|YP_008369828.1| - 6.9e-12 45.7 0.2 8.2e-12 45.5 0.1 1.0 1 0 0 1 1 1 1 PIN domain Antitoxin-MazE PF04014.13 gi|529043610|ref|YP_008369829.1| - 1.4e-05 24.6 0.0 1.9e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE SWIM PF04434.12 gi|529043611|ref|YP_008369830.1| - 0.00097 18.5 0.6 0.003 16.9 0.4 1.9 1 1 0 1 1 1 1 SWIM zinc finger HTH_23 PF13384.1 gi|529043612|ref|YP_008369831.1| - 3.8e-05 23.1 0.1 8e-05 22.1 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain TrmB PF01978.14 gi|529043612|ref|YP_008369831.1| - 0.00022 20.8 0.0 0.00037 20.1 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_29 PF13551.1 gi|529043612|ref|YP_008369831.1| - 0.00054 20.0 0.0 0.002 18.2 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn helix HTH_28 PF13518.1 gi|529043612|ref|YP_008369831.1| - 0.0057 16.6 0.0 0.023 14.6 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain MarR PF01047.17 gi|529043612|ref|YP_008369831.1| - 0.0079 15.8 0.0 0.013 15.1 0.0 1.3 1 0 0 1 1 1 1 MarR family Aminoglyc_resit PF10706.4 gi|529043613|ref|YP_008369832.1| - 0.00013 21.6 0.1 0.0072 15.9 0.1 2.2 1 1 1 2 2 2 2 Aminoglycoside-2''-adenylyltransferase NTP_transf_5 PF14907.1 gi|529043613|ref|YP_008369832.1| - 0.00063 19.1 0.0 0.00098 18.5 0.0 1.4 1 1 0 1 1 1 1 Uncharacterised nucleotidyltransferase DUF1814 PF08843.6 gi|529043613|ref|YP_008369832.1| - 0.008 15.9 0.4 0.014 15.2 0.3 1.6 1 1 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF1814) DUF955 PF06114.8 gi|529043614|ref|YP_008369833.1| - 0.001 18.7 0.1 0.0017 18.0 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF955) SprT-like PF10263.4 gi|529043614|ref|YP_008369833.1| - 0.023 14.3 3.6 0.21 11.2 2.5 2.3 1 1 0 1 1 1 0 SprT-like family DUF2265 PF10023.4 gi|529043614|ref|YP_008369833.1| - 0.074 12.1 0.0 0.13 11.3 0.0 1.4 1 0 0 1 1 1 0 Predicted aminopeptidase (DUF2265) OGG_N PF07934.7 gi|529043614|ref|YP_008369833.1| - 0.11 12.4 0.5 0.4 10.6 0.0 2.0 2 1 0 2 2 2 0 8-oxoguanine DNA glycosylase, N-terminal domain DUF2059 PF09832.4 gi|529043617|ref|YP_008369836.1| - 0.53 10.3 2.7 12 5.9 0.0 2.6 2 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2059) Sterol_MT_C PF08498.5 gi|529043618|ref|YP_008369837.1| - 0.14 12.1 0.1 0.17 11.8 0.1 1.1 1 0 0 1 1 1 0 Sterol methyltransferase C-terminal Rrf2 PF02082.15 gi|529043622|ref|YP_008369841.1| - 0.0024 17.9 0.0 0.25 11.4 0.0 2.4 2 0 0 2 2 2 1 Transcriptional regulator HTH_IclR PF09339.5 gi|529043622|ref|YP_008369841.1| - 0.0044 16.5 0.0 0.0079 15.7 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|529043622|ref|YP_008369841.1| - 0.0077 15.9 0.1 0.013 15.1 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_36 PF13730.1 gi|529043622|ref|YP_008369841.1| - 0.016 15.3 0.0 0.027 14.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|529043622|ref|YP_008369841.1| - 0.021 14.9 0.0 0.036 14.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HTH_24 PF13412.1 gi|529043622|ref|YP_008369841.1| - 0.035 13.4 0.0 0.064 12.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|529043622|ref|YP_008369841.1| - 0.072 12.7 0.0 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 MarR family DUF4439 PF14530.1 gi|529043622|ref|YP_008369841.1| - 0.1 13.0 0.1 0.29 11.6 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4439) HTH_28 PF13518.1 gi|529043622|ref|YP_008369841.1| - 0.15 12.0 0.0 0.3 11.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain TSC22 PF01166.13 gi|529043623|ref|YP_008369842.1| - 0.0083 16.0 0.1 0.012 15.5 0.1 1.2 1 0 0 1 1 1 1 TSC-22/dip/bun family DUF2564 PF10819.3 gi|529043623|ref|YP_008369842.1| - 0.02 15.0 0.1 0.021 14.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2564) DUF3832 PF12909.2 gi|529043623|ref|YP_008369842.1| - 0.035 14.1 0.1 0.039 13.9 0.1 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3832) HTH_10 PF04967.7 gi|529043625|ref|YP_008369844.1| - 3.2e-18 65.0 0.2 8.1e-18 63.7 0.1 1.7 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|529043625|ref|YP_008369844.1| - 0.0026 17.3 0.1 0.0044 16.6 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_37 PF13744.1 gi|529043625|ref|YP_008369844.1| - 0.0045 16.7 0.2 0.0081 15.9 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|529043625|ref|YP_008369844.1| - 0.0047 16.2 0.1 0.013 14.9 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.17 gi|529043625|ref|YP_008369844.1| - 0.0064 16.3 0.1 0.041 13.7 0.1 2.3 2 0 0 2 2 2 1 Helix-turn-helix MarR PF01047.17 gi|529043625|ref|YP_008369844.1| - 0.0078 15.8 0.1 0.027 14.1 0.1 2.0 2 1 0 2 2 2 1 MarR family HTH_1 PF00126.22 gi|529043625|ref|YP_008369844.1| - 0.012 15.3 1.9 0.022 14.4 0.6 1.9 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family TetR_N PF00440.18 gi|529043625|ref|YP_008369844.1| - 0.016 14.8 0.0 0.038 13.6 0.0 1.7 1 1 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_17 PF12728.2 gi|529043625|ref|YP_008369844.1| - 0.036 14.3 0.0 0.091 13.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.1 gi|529043625|ref|YP_008369844.1| - 0.045 13.7 0.1 0.13 12.2 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain RelB PF04221.7 gi|529043625|ref|YP_008369844.1| - 0.057 13.1 0.0 0.096 12.4 0.0 1.4 1 0 0 1 1 1 0 RelB antitoxin HTH_26 PF13443.1 gi|529043625|ref|YP_008369844.1| - 0.078 13.1 0.0 0.21 11.8 0.0 1.7 2 0 0 2 2 1 0 Cro/C1-type HTH DNA-binding domain Sigma70_r4 PF04545.11 gi|529043625|ref|YP_008369844.1| - 0.083 12.2 0.7 0.21 10.9 0.5 1.7 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_23 PF13384.1 gi|529043625|ref|YP_008369844.1| - 0.11 12.1 0.0 0.24 11.0 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_5 PF01022.15 gi|529043625|ref|YP_008369844.1| - 0.12 12.1 0.0 0.23 11.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Aldo_ket_red PF00248.16 gi|529043626|ref|YP_008369845.1| - 4.5e-56 189.7 0.0 5.5e-56 189.4 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family Lactamase_B_2 PF12706.2 gi|529043626|ref|YP_008369845.1| - 0.005 16.4 0.2 0.0065 16.0 0.2 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DUF1737 PF08410.5 gi|529043626|ref|YP_008369845.1| - 0.018 14.7 0.0 0.048 13.4 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1737) Cupin_2 PF07883.6 gi|529043627|ref|YP_008369846.1| - 2.7e-14 52.4 1.8 3.8e-14 51.9 1.3 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|529043627|ref|YP_008369846.1| - 4.7e-10 39.2 0.1 6e-10 38.9 0.1 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.17 gi|529043627|ref|YP_008369846.1| - 1.3e-06 27.8 0.0 1.5e-06 27.7 0.0 1.1 1 0 0 1 1 1 1 Cupin Pirin_C PF05726.8 gi|529043627|ref|YP_008369846.1| - 0.00055 19.9 0.0 0.00065 19.7 0.0 1.2 1 0 0 1 1 1 1 Pirin C-terminal cupin domain Cupin_3 PF05899.7 gi|529043627|ref|YP_008369846.1| - 0.0011 18.3 0.4 0.0031 16.8 0.3 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_6 PF12852.2 gi|529043627|ref|YP_008369846.1| - 0.0015 18.1 0.0 0.0017 18.0 0.0 1.1 1 0 0 1 1 1 1 Cupin Auxin_BP PF02041.11 gi|529043627|ref|YP_008369846.1| - 0.041 13.3 0.0 0.049 13.0 0.0 1.1 1 0 0 1 1 1 0 Auxin binding protein Ectoine_synth PF06339.7 gi|529043627|ref|YP_008369846.1| - 0.086 12.7 0.0 0.1 12.5 0.0 1.1 1 0 0 1 1 1 0 Ectoine synthase Aldo_ket_red PF00248.16 gi|529043628|ref|YP_008369847.1| - 3.5e-73 245.8 0.0 4e-73 245.7 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Lipase_GDSL_2 PF13472.1 gi|529043628|ref|YP_008369847.1| - 0.04 14.0 0.1 17 5.4 0.0 3.0 3 0 0 3 3 3 0 GDSL-like Lipase/Acylhydrolase family Flavodoxin_4 PF12682.2 gi|529043629|ref|YP_008369848.1| - 3.1e-33 114.3 0.0 4.2e-33 113.9 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_5 PF12724.2 gi|529043629|ref|YP_008369848.1| - 2e-07 31.0 0.0 0.00047 20.1 0.0 2.1 1 1 1 2 2 2 2 Flavodoxin domain Flavodoxin_3 PF12641.2 gi|529043629|ref|YP_008369848.1| - 1.5e-05 24.5 0.0 0.12 11.7 0.0 2.1 1 1 1 2 2 2 2 Flavodoxin domain FMN_red PF03358.10 gi|529043629|ref|YP_008369848.1| - 3.1e-05 23.5 0.0 4.2e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_1 PF00258.20 gi|529043629|ref|YP_008369848.1| - 8.9e-05 22.5 0.0 0.008 16.1 0.0 2.3 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_2 PF02525.12 gi|529043629|ref|YP_008369848.1| - 0.016 14.7 0.0 0.019 14.4 0.0 1.2 1 0 0 1 1 1 0 Flavodoxin-like fold Mrr_cat PF04471.7 gi|529043630|ref|YP_008369849.1| - 3.1e-28 97.8 0.0 5.3e-28 97.1 0.0 1.4 1 0 0 1 1 1 1 Restriction endonuclease zf-RING_5 PF14634.1 gi|529043630|ref|YP_008369849.1| - 1.1 9.0 7.7 5.4 6.8 4.8 2.2 2 0 0 2 2 2 0 zinc-RING finger domain DZR PF12773.2 gi|529043630|ref|YP_008369849.1| - 1.6 8.6 7.6 6 6.7 5.3 1.8 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|529043632|ref|YP_008369851.1| - 0.0053 16.1 1.1 2.7 7.5 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain DUF2318 PF10080.4 gi|529043632|ref|YP_008369851.1| - 0.008 15.9 0.1 0.01 15.6 0.0 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2318) DZR PF12773.2 gi|529043632|ref|YP_008369851.1| - 0.013 15.2 1.0 0.032 14.0 0.7 1.4 1 1 0 1 1 1 0 Double zinc ribbon Nudix_N_2 PF14803.1 gi|529043632|ref|YP_008369851.1| - 0.016 14.8 1.2 2.3 7.9 0.1 2.5 2 0 0 2 2 2 0 Nudix N-terminal DRP PF06044.7 gi|529043632|ref|YP_008369851.1| - 0.024 13.6 0.7 0.046 12.7 0.3 1.4 1 1 1 2 2 2 0 Dam-replacing family UPF0547 PF10571.4 gi|529043632|ref|YP_008369851.1| - 0.041 13.5 1.3 0.25 11.0 0.9 2.0 1 1 1 2 2 2 0 Uncharacterised protein family UPF0547 Lar_restr_allev PF14354.1 gi|529043632|ref|YP_008369851.1| - 0.042 14.1 3.1 0.11 12.8 2.2 1.7 1 1 0 1 1 1 0 Restriction alleviation protein Lar GFA PF04828.9 gi|529043632|ref|YP_008369851.1| - 0.057 13.3 1.6 1.8 8.5 0.2 2.2 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme C1_1 PF00130.17 gi|529043632|ref|YP_008369851.1| - 0.061 13.0 0.9 0.09 12.5 0.6 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-ribbon_3 PF13248.1 gi|529043632|ref|YP_008369851.1| - 0.081 12.1 4.8 1.2 8.4 3.9 2.1 1 1 2 3 3 3 0 zinc-ribbon domain zinc-ribbons_6 PF07191.7 gi|529043632|ref|YP_008369851.1| - 0.085 12.6 0.1 0.23 11.2 0.3 1.5 2 0 0 2 2 2 0 zinc-ribbons DUF1272 PF06906.6 gi|529043632|ref|YP_008369851.1| - 1.1 9.2 3.3 6.7 6.6 0.2 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) Zn-ribbon_8 PF09723.5 gi|529043633|ref|YP_008369852.1| - 0.015 15.2 0.8 3.7 7.5 0.0 2.2 2 0 0 2 2 2 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|529043633|ref|YP_008369852.1| - 0.023 14.3 0.1 0.033 13.8 0.1 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain A2L_zn_ribbon PF08792.5 gi|529043633|ref|YP_008369852.1| - 0.097 12.1 0.7 2.3 7.7 0.0 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|529043633|ref|YP_008369852.1| - 0.13 11.8 0.6 2.6 7.6 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF2387 PF09526.5 gi|529043633|ref|YP_008369852.1| - 0.15 12.0 0.6 0.24 11.3 0.4 1.3 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) zf-ribbon_3 PF13248.1 gi|529043633|ref|YP_008369852.1| - 0.17 11.1 2.4 3.2 7.0 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-H2C2_2 PF13465.1 gi|529043633|ref|YP_008369852.1| - 0.21 11.9 0.7 7.2 7.0 0.0 2.2 2 0 0 2 2 2 0 Zinc-finger double domain DZR PF12773.2 gi|529043633|ref|YP_008369852.1| - 0.22 11.3 1.6 2.4 8.0 1.1 2.0 1 1 0 1 1 1 0 Double zinc ribbon RNA_POL_M_15KD PF02150.11 gi|529043633|ref|YP_008369852.1| - 0.35 10.6 0.2 0.35 10.6 0.2 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit DUF3797 PF12677.2 gi|529043633|ref|YP_008369852.1| - 0.62 9.7 5.9 2.4 7.8 0.6 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) PDDEXK_1 PF12705.2 gi|529043634|ref|YP_008369853.1| - 0.059 12.7 0.2 0.064 12.6 0.1 1.1 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily ABC_tran PF00005.22 gi|529043636|ref|YP_008369855.1| - 4e-27 95.1 0.0 5.6e-27 94.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|529043636|ref|YP_008369855.1| - 5.7e-13 49.4 0.0 8.8e-09 35.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|529043636|ref|YP_008369855.1| - 0.0025 18.1 0.0 0.0038 17.5 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|529043636|ref|YP_008369855.1| - 0.0057 16.1 0.3 0.011 15.2 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Mg_chelatase PF01078.16 gi|529043636|ref|YP_008369855.1| - 0.01 14.9 0.0 0.017 14.2 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_15 PF13175.1 gi|529043636|ref|YP_008369855.1| - 0.023 13.7 0.0 0.12 11.3 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.1 gi|529043636|ref|YP_008369855.1| - 0.029 13.9 0.1 0.059 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|529043636|ref|YP_008369855.1| - 0.07 12.5 0.1 0.13 11.7 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_33 PF13671.1 gi|529043636|ref|YP_008369855.1| - 0.1 12.4 0.0 0.26 11.1 0.0 1.9 2 1 0 2 2 2 0 AAA domain DUF2142 PF09913.4 gi|529043638|ref|YP_008369857.1| - 0.049 12.2 4.6 0.06 12.0 3.2 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2142) SPC12 PF06645.8 gi|529043638|ref|YP_008369857.1| - 1.2 9.0 6.0 5 7.0 0.4 2.6 1 1 1 2 2 2 0 Microsomal signal peptidase 12 kDa subunit (SPC12) HTH_20 PF12840.2 gi|529043639|ref|YP_008369858.1| - 9.2e-10 38.1 0.5 1.7e-09 37.3 0.3 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|529043639|ref|YP_008369858.1| - 1.8e-06 27.2 0.0 3.2e-06 26.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|529043639|ref|YP_008369858.1| - 2.6e-06 26.8 0.0 4.4e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|529043639|ref|YP_008369858.1| - 1.1e-05 24.9 0.2 3.2e-05 23.5 0.2 1.7 1 1 1 2 2 2 1 MarR family HTH_11 PF08279.7 gi|529043639|ref|YP_008369858.1| - 4.2e-05 23.0 0.1 7.5e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|529043639|ref|YP_008369858.1| - 5.8e-05 22.7 0.0 8.3e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_AsnC-type PF13404.1 gi|529043639|ref|YP_008369858.1| - 0.00043 19.7 0.3 0.001 18.5 0.2 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_23 PF13384.1 gi|529043639|ref|YP_008369858.1| - 0.00055 19.4 0.1 0.0011 18.5 0.1 1.6 1 1 0 1 1 1 1 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|529043639|ref|YP_008369858.1| - 0.0053 16.2 0.2 0.0085 15.5 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.1 gi|529043639|ref|YP_008369858.1| - 0.0091 15.1 0.1 0.019 14.0 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 MarR PF01047.17 gi|529043639|ref|YP_008369858.1| - 0.011 15.3 0.0 0.02 14.6 0.0 1.4 1 0 0 1 1 1 0 MarR family FUR PF01475.14 gi|529043639|ref|YP_008369858.1| - 0.016 15.1 0.0 0.018 14.9 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family PadR PF03551.9 gi|529043639|ref|YP_008369858.1| - 0.049 13.3 0.0 0.099 12.4 0.0 1.7 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_7 PF02796.10 gi|529043639|ref|YP_008369858.1| - 0.085 12.7 0.0 0.24 11.2 0.0 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_27 PF13463.1 gi|529043639|ref|YP_008369858.1| - 0.1 12.9 0.1 0.23 11.7 0.1 1.6 1 1 0 1 1 1 0 Winged helix DNA-binding domain Sigma70_r4 PF04545.11 gi|529043639|ref|YP_008369858.1| - 0.11 11.7 0.0 0.19 11.0 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 Acyl_transf_3 PF01757.17 gi|529043640|ref|YP_008369859.1| - 0.063 12.1 9.6 0.08 11.7 6.6 1.1 1 0 0 1 1 1 0 Acyltransferase family Herpes_UL49_5 PF05702.6 gi|529043640|ref|YP_008369859.1| - 10 6.1 7.5 3.5 7.5 2.1 2.5 1 1 1 2 2 2 0 Herpesvirus UL49.5 envelope/tegument protein zinc_ribbon_2 PF13240.1 gi|529043641|ref|YP_008369860.1| - 0.0047 16.3 0.9 2.3 7.7 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|529043641|ref|YP_008369860.1| - 0.0055 16.4 1.2 0.0091 15.7 0.8 1.4 1 0 0 1 1 1 1 Double zinc ribbon Nudix_N_2 PF14803.1 gi|529043641|ref|YP_008369860.1| - 0.0071 16.0 1.8 0.91 9.2 0.1 2.5 2 0 0 2 2 2 2 Nudix N-terminal DRP PF06044.7 gi|529043641|ref|YP_008369860.1| - 0.023 13.6 0.5 0.05 12.6 0.2 1.5 1 1 0 1 1 1 0 Dam-replacing family DUF2318 PF10080.4 gi|529043641|ref|YP_008369860.1| - 0.036 13.8 0.0 0.047 13.4 0.0 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) GFA PF04828.9 gi|529043641|ref|YP_008369860.1| - 0.039 13.9 1.4 1.1 9.2 0.2 2.2 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zinc-ribbons_6 PF07191.7 gi|529043641|ref|YP_008369860.1| - 0.063 13.0 0.1 0.17 11.6 0.4 1.5 2 0 0 2 2 2 0 zinc-ribbons zf-ribbon_3 PF13248.1 gi|529043641|ref|YP_008369860.1| - 0.12 11.5 4.1 0.56 9.4 2.9 1.9 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|529043641|ref|YP_008369860.1| - 0.16 11.6 0.9 4.3 7.1 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|529043641|ref|YP_008369860.1| - 0.2 11.3 4.5 0.41 10.3 3.1 1.5 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Lar_restr_allev PF14354.1 gi|529043641|ref|YP_008369860.1| - 0.23 11.7 3.9 0.71 10.2 2.7 1.8 1 1 0 1 1 1 0 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.2 gi|529043641|ref|YP_008369860.1| - 0.7 9.7 3.1 1.8 8.4 2.1 1.8 1 1 0 1 1 1 0 Transposase zinc-ribbon domain PDDEXK_1 PF12705.2 gi|529043642|ref|YP_008369861.1| - 0.1 11.9 0.5 0.13 11.6 0.4 1.1 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily OrfB_IS605 PF01385.14 gi|529043643|ref|YP_008369862.1| - 7.2e-61 205.4 0.0 1.1e-60 204.9 0.0 1.2 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|529043643|ref|YP_008369862.1| - 6.5e-18 64.1 0.3 1.2e-17 63.3 0.2 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain eIF3_p135 PF12807.2 gi|529043643|ref|YP_008369862.1| - 0.066 13.1 0.0 8.8 6.2 0.0 2.3 1 1 1 2 2 2 0 Translation initiation factor eIF3 subunit 135 Sigma70_r1_1 PF03979.9 gi|529043643|ref|YP_008369862.1| - 0.075 12.9 0.0 0.38 10.7 0.0 2.2 2 0 0 2 2 2 0 Sigma-70 factor, region 1.1 Lipase_GDSL_2 PF13472.1 gi|529043643|ref|YP_008369862.1| - 0.076 13.1 0.1 0.21 11.7 0.0 1.7 2 0 0 2 2 2 0 GDSL-like Lipase/Acylhydrolase family OrfB_Zn_ribbon PF07282.6 gi|529043650|ref|YP_008369869.1| - 8.5e-19 66.9 0.1 2.1e-18 65.7 0.0 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|529043650|ref|YP_008369869.1| - 8.5e-07 28.5 0.5 4.4e-06 26.2 0.4 2.0 1 1 0 1 1 1 1 Probable transposase DZR PF12773.2 gi|529043650|ref|YP_008369869.1| - 0.011 15.5 1.3 0.029 14.1 0.9 1.7 1 0 0 1 1 1 0 Double zinc ribbon Cys_rich_KTR PF14205.1 gi|529043650|ref|YP_008369869.1| - 0.049 13.0 1.3 0.11 11.9 0.9 1.5 1 0 0 1 1 1 0 Cysteine-rich KTR zf-NADH-PPase PF09297.6 gi|529043650|ref|YP_008369869.1| - 0.087 12.3 4.3 0.16 11.5 0.1 2.7 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.1 gi|529043650|ref|YP_008369869.1| - 0.27 10.4 3.6 1.3 8.2 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|529043650|ref|YP_008369869.1| - 0.76 9.6 6.3 3.4 7.5 3.5 2.8 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|529043652|ref|YP_008369871.1| - 0.034 13.6 2.2 0.034 13.6 1.5 2.5 3 0 0 3 3 3 0 zinc-ribbon domain DZR PF12773.2 gi|529043652|ref|YP_008369871.1| - 0.37 10.6 10.6 0.36 10.6 0.7 2.8 2 1 0 2 2 2 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|529043652|ref|YP_008369871.1| - 0.91 8.8 11.0 0.08 12.1 2.5 2.7 3 0 0 3 3 3 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|529043652|ref|YP_008369871.1| - 2.2 8.0 9.8 4.2 7.1 0.1 3.6 3 1 0 3 3 3 0 RNA polymerases M/15 Kd subunit TFIIB PF00382.14 gi|529043653|ref|YP_008369872.1| - 1.3e-30 105.0 2.8 6.2e-17 61.1 0.4 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|529043653|ref|YP_008369872.1| - 6.4e-12 44.5 2.3 1.2e-11 43.7 1.6 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding DZR PF12773.2 gi|529043653|ref|YP_008369872.1| - 0.023 14.5 2.0 0.031 14.0 0.6 1.8 2 0 0 2 2 2 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|529043653|ref|YP_008369872.1| - 0.031 13.9 1.5 0.11 12.1 0.6 2.2 2 0 0 2 2 2 0 Putative transposase DNA-binding domain HTH_24 PF13412.1 gi|529043653|ref|YP_008369872.1| - 0.04 13.3 0.1 0.13 11.6 0.0 1.9 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding UPF0547 PF10571.4 gi|529043653|ref|YP_008369872.1| - 0.049 13.3 2.3 0.11 12.2 1.6 1.6 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 zinc-ribbons_6 PF07191.7 gi|529043653|ref|YP_008369872.1| - 0.055 13.2 1.1 0.13 12.0 0.8 1.6 1 0 0 1 1 1 0 zinc-ribbons PHF5 PF03660.9 gi|529043653|ref|YP_008369872.1| - 0.066 13.2 0.8 0.15 12.0 0.6 1.6 1 0 0 1 1 1 0 PHF5-like protein Prok-RING_1 PF14446.1 gi|529043653|ref|YP_008369872.1| - 0.21 11.3 3.3 0.51 10.1 2.3 1.6 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 DNA_methylase PF00145.12 gi|529043654|ref|YP_008369873.1| - 3e-54 184.4 0.0 3.9e-54 184.0 0.0 1.1 1 0 0 1 1 1 1 C-5 cytosine-specific DNA methylase Methyltransf_26 PF13659.1 gi|529043654|ref|YP_008369873.1| - 2e-05 24.5 0.0 4.5e-05 23.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|529043654|ref|YP_008369873.1| - 0.00049 20.4 0.1 0.0013 19.0 0.1 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|529043654|ref|YP_008369873.1| - 0.00062 19.3 0.0 0.00098 18.7 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.9 gi|529043654|ref|YP_008369873.1| - 0.053 12.8 0.0 0.083 12.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain TehB PF03848.9 gi|529043654|ref|YP_008369873.1| - 0.17 11.0 0.0 0.28 10.3 0.0 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB DUF1998 PF09369.5 gi|529043655|ref|YP_008369874.1| - 9.9e-07 29.2 0.3 3.1e-06 27.6 0.2 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) UBA PF00627.26 gi|529043655|ref|YP_008369874.1| - 0.014 15.2 0.3 0.029 14.2 0.2 1.5 1 0 0 1 1 1 0 UBA/TS-N domain Helicase_C PF00271.26 gi|529043656|ref|YP_008369875.1| - 6.3e-08 32.3 0.0 1.4e-07 31.2 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|529043656|ref|YP_008369875.1| - 0.0017 17.8 0.0 1.5 8.2 0.0 2.3 2 0 0 2 2 2 2 DEAD/DEAH box helicase Lar_restr_allev PF14354.1 gi|529043656|ref|YP_008369875.1| - 0.01 16.1 0.6 0.033 14.4 0.4 1.8 1 0 0 1 1 1 0 Restriction alleviation protein Lar Sod_Fe_C PF02777.13 gi|529043656|ref|YP_008369875.1| - 0.14 12.0 0.0 0.27 11.0 0.0 1.4 1 0 0 1 1 1 0 Iron/manganese superoxide dismutases, C-terminal domain SF-assemblin PF06705.6 gi|529043657|ref|YP_008369876.1| - 0.03 13.4 0.1 0.056 12.5 0.1 1.3 1 0 0 1 1 1 0 SF-assemblin/beta giardin Cys_rich_CPCC PF14206.1 gi|529043658|ref|YP_008369877.1| - 0.12 11.9 0.1 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 Cysteine-rich CPCC Lar_restr_allev PF14354.1 gi|529043658|ref|YP_008369877.1| - 0.59 10.4 3.2 2 8.7 0.7 2.2 2 1 0 2 2 2 0 Restriction alleviation protein Lar zf-C2HC_2 PF13913.1 gi|529043658|ref|YP_008369877.1| - 0.84 9.3 3.9 8.1 6.2 2.7 2.1 1 1 0 1 1 1 0 zinc-finger of a C2HC-type tRNA_anti-codon PF01336.20 gi|529043661|ref|YP_008369880.1| - 0.00061 19.6 0.1 0.0012 18.6 0.1 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DUF2250 PF10007.4 gi|529043663|ref|YP_008369882.1| - 6.7e-05 22.7 0.0 0.00079 19.2 0.0 1.9 1 1 1 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_24 PF13412.1 gi|529043663|ref|YP_008369882.1| - 0.0013 18.0 0.0 0.016 14.5 0.0 2.0 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|529043663|ref|YP_008369882.1| - 0.0019 18.4 0.0 0.0027 18.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|529043663|ref|YP_008369882.1| - 0.0032 17.1 0.0 0.0038 16.8 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.1 gi|529043663|ref|YP_008369882.1| - 0.0057 16.1 0.1 0.0076 15.7 0.0 1.2 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Mrr_N PF14338.1 gi|529043663|ref|YP_008369882.1| - 0.012 15.6 0.0 0.017 15.2 0.0 1.3 1 1 0 1 1 1 0 Mrr N-terminal domain HTH_45 PF14947.1 gi|529043663|ref|YP_008369882.1| - 0.11 12.3 0.0 0.13 12.0 0.0 1.3 1 1 0 1 1 1 0 Winged helix-turn-helix DUF2161 PF09929.4 gi|529043663|ref|YP_008369882.1| - 0.13 12.2 0.0 0.2 11.6 0.0 1.3 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2161) TrmB PF01978.14 gi|529043665|ref|YP_008369884.1| - 3.9e-10 39.2 0.2 8.7e-10 38.1 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|529043665|ref|YP_008369884.1| - 1.6e-08 34.2 0.2 4.5e-08 32.7 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|529043665|ref|YP_008369884.1| - 2e-08 33.4 0.1 2.6e-07 29.8 0.0 2.5 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|529043665|ref|YP_008369884.1| - 6e-06 25.8 0.0 3.3e-05 23.4 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|529043665|ref|YP_008369884.1| - 0.00011 21.7 0.2 0.00038 19.9 0.0 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|529043665|ref|YP_008369884.1| - 0.00072 19.1 0.5 0.0016 18.0 0.1 1.9 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|529043665|ref|YP_008369884.1| - 0.0059 16.2 0.0 0.014 15.1 0.0 1.6 1 0 0 1 1 1 1 MarR family FeoC PF09012.5 gi|529043665|ref|YP_008369884.1| - 0.013 15.1 0.0 0.065 12.9 0.0 1.9 2 0 0 2 2 2 0 FeoC like transcriptional regulator HTH_DeoR PF08220.7 gi|529043665|ref|YP_008369884.1| - 0.014 14.9 0.0 0.041 13.4 0.0 1.8 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain PadR PF03551.9 gi|529043665|ref|YP_008369884.1| - 0.026 14.2 0.0 0.06 13.1 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_29 PF13551.1 gi|529043665|ref|YP_008369884.1| - 0.028 14.5 0.1 0.065 13.3 0.0 1.7 1 1 0 1 1 1 0 Winged helix-turn helix HTH_34 PF13601.1 gi|529043665|ref|YP_008369884.1| - 0.046 13.7 0.0 0.084 12.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|529043665|ref|YP_008369884.1| - 0.07 12.7 0.0 0.98 9.1 0.0 2.3 2 0 0 2 2 2 0 HTH domain F-112 PF09645.5 gi|529043665|ref|YP_008369884.1| - 0.091 12.6 0.0 14 5.5 0.0 2.2 2 0 0 2 2 2 0 F-112 protein Penicillinase_R PF03965.11 gi|529043665|ref|YP_008369884.1| - 0.095 12.7 0.0 0.18 11.9 0.0 1.5 1 0 0 1 1 1 0 Penicillinase repressor DUF1522 PF07482.6 gi|529043665|ref|YP_008369884.1| - 0.1 12.7 0.0 0.19 11.9 0.0 1.5 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1522) HTH_45 PF14947.1 gi|529043665|ref|YP_008369884.1| - 0.11 12.2 0.0 0.28 11.0 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix OrfB_Zn_ribbon PF07282.6 gi|529043666|ref|YP_008369885.1| - 0.0021 17.6 0.2 0.0036 16.9 0.1 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.2 gi|529043666|ref|YP_008369885.1| - 0.025 14.3 1.9 0.041 13.7 0.3 1.9 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Lactamase_B PF00753.22 gi|529043668|ref|YP_008369887.1| - 4.2e-12 46.1 7.3 4.2e-12 46.1 5.0 2.2 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|529043668|ref|YP_008369887.1| - 1e-09 38.1 0.6 1e-09 38.1 0.4 2.3 3 0 0 3 3 3 1 Beta-lactamase superfamily domain Parvo_coat_N PF08398.5 gi|529043669|ref|YP_008369888.1| - 0.0099 15.6 0.0 0.024 14.4 0.0 1.6 1 1 0 1 1 1 1 Parvovirus coat protein VP1 SlyX PF04102.7 gi|529043670|ref|YP_008369889.1| - 0.028 14.7 1.0 0.11 12.8 0.2 2.3 3 0 0 3 3 3 0 SlyX ATG16 PF08614.6 gi|529043670|ref|YP_008369889.1| - 0.037 13.8 2.0 0.047 13.4 1.0 1.5 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) TMF_DNA_bd PF12329.3 gi|529043670|ref|YP_008369889.1| - 0.081 12.7 1.0 0.17 11.7 0.7 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding DUF3484 PF11983.3 gi|529043670|ref|YP_008369889.1| - 0.14 12.9 0.6 0.4 11.5 0.0 2.1 3 0 0 3 3 3 0 Domain of unknown function (DUF3484) DivIC PF04977.10 gi|529043670|ref|YP_008369889.1| - 0.2 11.1 4.0 0.067 12.6 0.6 1.8 2 0 0 2 2 2 0 Septum formation initiator Prefoldin PF02996.12 gi|529043670|ref|YP_008369889.1| - 0.66 9.6 3.1 0.56 9.8 1.1 1.7 2 0 0 2 2 2 0 Prefoldin subunit DS PF01916.12 gi|529043675|ref|YP_008369894.1| - 2.4e-96 322.4 0.0 2.7e-96 322.2 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase E1-E2_ATPase PF00122.15 gi|529043676|ref|YP_008369895.1| - 5.8e-39 133.4 0.5 5.8e-39 133.4 0.4 1.9 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|529043676|ref|YP_008369895.1| - 1.3e-31 110.7 4.4 2.6e-31 109.7 3.1 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|529043676|ref|YP_008369895.1| - 7.3e-12 45.8 0.1 1.5e-11 44.8 0.0 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|529043676|ref|YP_008369895.1| - 1.5e-07 31.4 0.0 6.5e-07 29.4 0.0 2.2 2 0 0 2 2 2 1 Heavy-metal-associated domain Hydrolase_3 PF08282.7 gi|529043676|ref|YP_008369895.1| - 3.6e-05 23.4 0.1 5.9e-05 22.7 0.1 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase ATPase-cat_bd PF12156.3 gi|529043676|ref|YP_008369895.1| - 0.0012 19.3 1.1 0.0029 18.0 0.2 1.9 2 0 0 2 2 2 1 Putative metal-binding domain of cation transport ATPase DsbD_2 PF13386.1 gi|529043677|ref|YP_008369896.1| - 7.3e-31 107.4 19.7 1e-30 107.0 13.7 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Chlorosome_CsmC PF11098.3 gi|529043677|ref|YP_008369896.1| - 0.21 11.3 8.8 1.7 8.3 0.3 2.3 1 1 1 2 2 2 0 Chlorosome envelope protein C TrkA_N PF02254.13 gi|529043678|ref|YP_008369897.1| - 1.7e-28 98.9 3.9 1.5e-25 89.4 1.7 2.5 2 0 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.16 gi|529043678|ref|YP_008369897.1| - 8.4e-16 57.3 1.0 2.2e-13 49.5 0.1 2.7 2 0 0 2 2 2 1 TrkA-C domain NAD_binding_7 PF13241.1 gi|529043678|ref|YP_008369897.1| - 3.2e-09 36.9 3.7 6.9e-09 35.8 0.9 2.3 2 1 1 3 3 3 1 Putative NAD(P)-binding Shikimate_DH PF01488.15 gi|529043678|ref|YP_008369897.1| - 6.7e-08 32.7 0.8 2e-07 31.1 0.2 1.9 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|529043678|ref|YP_008369897.1| - 8.6e-06 25.5 0.2 0.00012 21.8 0.0 2.3 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Pyr_redox PF00070.22 gi|529043678|ref|YP_008369897.1| - 1.8e-05 25.0 0.3 0.0049 17.2 0.2 2.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|529043678|ref|YP_008369897.1| - 2.8e-05 23.5 2.5 0.00015 21.1 0.2 2.8 2 2 1 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.11 gi|529043678|ref|YP_008369897.1| - 0.00012 21.5 0.4 0.00024 20.5 0.2 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.12 gi|529043678|ref|YP_008369897.1| - 0.00019 21.7 1.1 0.0011 19.3 0.3 2.2 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.13 gi|529043678|ref|YP_008369897.1| - 0.00024 20.7 0.3 0.0092 15.6 0.2 2.2 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain OCD_Mu_crystall PF02423.10 gi|529043678|ref|YP_008369897.1| - 0.00055 18.7 2.1 0.001 17.9 1.5 1.3 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Saccharop_dh PF03435.13 gi|529043678|ref|YP_008369897.1| - 0.00065 18.7 1.3 0.00098 18.1 0.9 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase XdhC_C PF13478.1 gi|529043678|ref|YP_008369897.1| - 0.0014 18.9 1.4 0.32 11.3 0.5 2.8 3 1 0 3 3 3 1 XdhC Rossmann domain FAD_binding_3 PF01494.14 gi|529043678|ref|YP_008369897.1| - 0.002 17.2 0.0 1.3 7.9 0.1 2.2 2 0 0 2 2 2 2 FAD binding domain NAD_binding_2 PF03446.10 gi|529043678|ref|YP_008369897.1| - 0.003 17.4 0.9 0.011 15.6 0.1 1.9 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|529043678|ref|YP_008369897.1| - 0.014 14.8 1.1 0.021 14.1 0.2 1.7 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, catalytic domain Pyr_redox_3 PF13738.1 gi|529043678|ref|YP_008369897.1| - 0.024 14.7 0.0 0.1 12.6 0.0 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.14 gi|529043678|ref|YP_008369897.1| - 0.026 13.7 0.1 0.17 11.0 0.0 2.0 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DUF4147 PF13660.1 gi|529043678|ref|YP_008369897.1| - 0.029 13.4 0.0 0.93 8.5 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4147) HEM4 PF02602.10 gi|529043678|ref|YP_008369897.1| - 0.044 13.0 0.1 0.41 9.8 0.1 2.2 1 1 0 1 1 1 0 Uroporphyrinogen-III synthase HemD Semialdhyde_dh PF01118.19 gi|529043678|ref|YP_008369897.1| - 0.058 13.7 0.3 0.15 12.3 0.1 1.8 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain RrnaAD PF00398.15 gi|529043678|ref|YP_008369897.1| - 0.12 11.4 0.1 0.18 10.8 0.1 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase ThiF PF00899.16 gi|529043678|ref|YP_008369897.1| - 0.13 12.1 3.7 1.6 8.5 0.2 2.7 2 1 1 3 3 2 0 ThiF family Pyr_redox_2 PF07992.9 gi|529043678|ref|YP_008369897.1| - 0.14 11.9 1.1 4.1 7.2 0.2 2.7 2 2 1 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase PE PF00934.15 gi|529043678|ref|YP_008369897.1| - 0.19 11.8 0.9 0.84 9.7 0.0 2.4 3 0 0 3 3 3 0 PE family Rossmann-like PF10727.4 gi|529043678|ref|YP_008369897.1| - 0.27 10.9 1.8 0.87 9.3 1.2 1.9 1 1 0 1 1 1 0 Rossmann-like domain DDE_Tnp_IS1595 PF12762.2 gi|529043679|ref|YP_008369898.1| - 2.6e-21 76.0 0.0 3.5e-21 75.6 0.0 1.2 1 0 0 1 1 1 1 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.2 gi|529043679|ref|YP_008369898.1| - 3.4e-10 39.5 1.2 6.9e-10 38.5 0.9 1.5 1 0 0 1 1 1 1 Transposase zinc-ribbon domain DUF2089 PF09862.4 gi|529043679|ref|YP_008369898.1| - 2.8e-07 30.3 0.0 4e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2089) Zn_Tnp_IS1 PF03811.8 gi|529043679|ref|YP_008369898.1| - 7.7e-05 22.1 4.6 0.00015 21.1 2.5 1.9 2 0 0 2 2 2 1 InsA N-terminal domain HTH_23 PF13384.1 gi|529043679|ref|YP_008369898.1| - 0.0011 18.5 0.0 0.0037 16.8 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|529043679|ref|YP_008369898.1| - 0.0079 16.1 0.1 0.08 12.9 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|529043679|ref|YP_008369898.1| - 0.0097 15.3 0.0 0.17 11.3 0.0 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_30 PF13556.1 gi|529043679|ref|YP_008369898.1| - 0.014 14.9 0.1 0.034 13.7 0.0 1.6 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain Zn-ribbon_8 PF09723.5 gi|529043679|ref|YP_008369898.1| - 0.019 14.9 1.1 6.8 6.7 0.0 2.5 2 0 0 2 2 2 0 Zinc ribbon domain ADK_lid PF05191.9 gi|529043679|ref|YP_008369898.1| - 0.042 13.5 0.2 0.042 13.5 0.1 2.1 2 0 0 2 2 2 0 Adenylate kinase, active site lid zinc-ribbons_6 PF07191.7 gi|529043679|ref|YP_008369898.1| - 0.063 13.0 0.1 0.13 12.0 0.1 1.5 1 0 0 1 1 1 0 zinc-ribbons HTH_29 PF13551.1 gi|529043679|ref|YP_008369898.1| - 0.071 13.2 0.0 0.21 11.7 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn helix zf-C4_Topoisom PF01396.14 gi|529043679|ref|YP_008369898.1| - 0.082 12.4 1.0 0.16 11.4 0.7 1.5 1 1 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger TF_Zn_Ribbon PF08271.7 gi|529043679|ref|YP_008369898.1| - 0.11 11.8 1.3 0.24 10.7 0.9 1.7 1 0 0 1 1 1 0 TFIIB zinc-binding zf-Dof PF02701.10 gi|529043679|ref|YP_008369898.1| - 0.11 12.4 3.6 0.22 11.4 2.5 1.5 1 0 0 1 1 1 0 Dof domain, zinc finger DZR PF12773.2 gi|529043679|ref|YP_008369898.1| - 0.11 12.3 0.4 0.22 11.3 0.3 1.4 1 0 0 1 1 1 0 Double zinc ribbon Zn_ribbon_recom PF13408.1 gi|529043679|ref|YP_008369898.1| - 0.11 12.7 1.7 0.31 11.3 1.2 1.7 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain zf-ISL3 PF14690.1 gi|529043679|ref|YP_008369898.1| - 0.71 9.9 5.0 14 5.8 0.1 2.6 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-C2H2_6 PF13912.1 gi|529043679|ref|YP_008369898.1| - 1.4 8.9 4.5 0.75 9.7 0.2 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger DDE_Tnp_1 PF01609.16 gi|529043681|ref|YP_008369900.1| - 2e-14 53.6 1.5 3.5e-14 52.8 1.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|529043681|ref|YP_008369900.1| - 0.0029 17.7 3.4 0.0044 17.1 0.1 2.4 2 1 0 2 2 2 1 Transposase DDE domain DUF772 PF05598.6 gi|529043681|ref|YP_008369900.1| - 0.065 13.1 0.1 0.2 11.5 0.1 1.8 1 0 0 1 1 1 0 Transposase domain (DUF772) CbiA PF01656.18 gi|529043682|ref|YP_008369901.1| - 9.6e-14 51.2 0.0 9.7e-14 51.2 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|529043682|ref|YP_008369901.1| - 3.9e-08 33.3 0.0 4.5e-08 33.1 0.0 1.1 1 0 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|529043682|ref|YP_008369901.1| - 2.1e-05 23.7 0.0 2.3e-05 23.6 0.0 1.1 1 0 0 1 1 1 1 ATPase MipZ AAA_17 PF13207.1 gi|529043682|ref|YP_008369901.1| - 0.00015 22.5 0.0 0.00017 22.3 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|529043682|ref|YP_008369901.1| - 0.0006 19.3 0.0 0.00098 18.6 0.0 1.5 1 1 0 1 1 1 1 AAA-like domain YhjQ PF06564.7 gi|529043682|ref|YP_008369901.1| - 0.001 18.4 0.1 0.0019 17.6 0.1 1.5 1 1 0 1 1 1 1 YhjQ protein ArsA_ATPase PF02374.10 gi|529043682|ref|YP_008369901.1| - 0.002 17.2 0.0 0.0025 16.8 0.0 1.2 1 0 0 1 1 1 1 Anion-transporting ATPase ATP_bind_1 PF03029.12 gi|529043682|ref|YP_008369901.1| - 0.0021 17.6 0.0 0.0036 16.8 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein SRP54 PF00448.17 gi|529043682|ref|YP_008369901.1| - 0.0036 16.7 0.0 0.0047 16.3 0.0 1.1 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_18 PF13238.1 gi|529043682|ref|YP_008369901.1| - 0.0077 16.5 0.0 0.0093 16.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|529043682|ref|YP_008369901.1| - 0.0083 16.1 0.0 0.01 15.8 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.12 gi|529043682|ref|YP_008369901.1| - 0.014 14.8 0.0 0.017 14.5 0.0 1.2 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_14 PF13173.1 gi|529043682|ref|YP_008369901.1| - 0.02 14.7 0.0 0.031 14.1 0.0 1.3 1 1 0 1 1 1 0 AAA domain Fer4_NifH PF00142.13 gi|529043682|ref|YP_008369901.1| - 0.021 14.0 0.0 0.027 13.6 0.0 1.2 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MobB PF03205.9 gi|529043682|ref|YP_008369901.1| - 0.04 13.6 0.0 0.066 12.9 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_24 PF13479.1 gi|529043682|ref|YP_008369901.1| - 0.068 12.7 0.0 0.068 12.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|529043682|ref|YP_008369901.1| - 0.07 12.8 0.0 0.074 12.7 0.0 1.1 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.1 gi|529043682|ref|YP_008369901.1| - 0.092 12.1 0.2 0.16 11.3 0.1 1.4 1 1 0 1 1 1 0 AAA domain KTI12 PF08433.5 gi|529043682|ref|YP_008369901.1| - 0.094 11.9 0.0 0.12 11.6 0.0 1.1 1 0 0 1 1 1 0 Chromatin associated protein KTI12 DUF3464 PF11947.3 gi|529043685|ref|YP_008369904.1| - 0.077 12.4 0.3 0.077 12.4 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3464) GSH_synthase PF03199.10 gi|529043686|ref|YP_008369905.1| - 0.12 12.4 0.5 0.13 12.3 0.3 1.0 1 0 0 1 1 1 0 Eukaryotic glutathione synthase Phage_holin_2 PF04550.7 gi|529043688|ref|YP_008369907.1| - 0.23 11.5 3.2 0.43 10.7 2.2 1.5 1 0 0 1 1 1 0 Phage holin family 2 MP PF01107.13 gi|529043691|ref|YP_008369910.1| - 0.019 14.3 0.0 0.03 13.6 0.0 1.2 1 0 0 1 1 1 0 Viral movement protein (MP) DDE_Tnp_1 PF01609.16 gi|529043693|ref|YP_008369912.1| - 2.7e-22 79.3 0.0 3.6e-22 78.9 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|529043693|ref|YP_008369912.1| - 0.032 13.2 0.0 0.072 12.0 0.0 1.5 2 0 0 2 2 2 0 Archaeal putative transposase ISC1217 DDE_Tnp_1_2 PF13586.1 gi|529043693|ref|YP_008369912.1| - 0.076 13.2 0.0 0.25 11.5 0.0 1.8 2 0 0 2 2 2 0 Transposase DDE domain DDE_Tnp_IS66 PF03050.9 gi|529043694|ref|YP_008369913.1| - 1.2e-53 182.0 0.2 1.6e-53 181.6 0.1 1.1 1 0 0 1 1 1 1 Transposase IS66 family zf-IS66 PF13005.2 gi|529043694|ref|YP_008369913.1| - 0.00097 19.0 0.5 0.0025 17.7 0.3 1.7 1 0 0 1 1 1 1 zinc-finger binding domain of transposase IS66 Transposase_mut PF00872.13 gi|529043694|ref|YP_008369913.1| - 0.0092 14.5 0.1 0.017 13.6 0.0 1.4 1 0 0 1 1 1 1 Transposase, Mutator family DDE_Tnp_IS240 PF13610.1 gi|529043694|ref|YP_008369913.1| - 0.1 12.5 0.1 0.25 11.3 0.1 1.7 1 1 0 1 1 1 0 DDE domain DUF2249 PF10006.4 gi|529043695|ref|YP_008369914.1| - 0.011 15.2 0.8 0.017 14.6 0.1 1.6 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2249) ABC_tran PF00005.22 gi|529043696|ref|YP_008369915.1| - 8.5e-29 100.6 0.0 1.1e-28 100.2 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|529043696|ref|YP_008369915.1| - 3.3e-16 60.0 0.0 9.8e-11 42.1 0.0 2.0 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|529043696|ref|YP_008369915.1| - 0.0016 17.5 0.0 0.0044 16.1 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain BCA_ABC_TP_C PF12399.3 gi|529043696|ref|YP_008369915.1| - 0.0044 16.6 0.1 0.043 13.5 0.0 2.4 2 0 0 2 2 2 1 Branched-chain amino acid ATP-binding cassette transporter Zeta_toxin PF06414.7 gi|529043696|ref|YP_008369915.1| - 0.022 13.8 0.0 0.035 13.2 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_23 PF13476.1 gi|529043696|ref|YP_008369915.1| - 0.028 14.7 0.1 0.065 13.5 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|529043696|ref|YP_008369915.1| - 0.039 14.1 0.0 0.16 12.1 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|529043696|ref|YP_008369915.1| - 0.04 14.7 0.0 0.066 14.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|529043696|ref|YP_008369915.1| - 0.049 13.0 0.1 0.11 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA-like domain AAA_16 PF13191.1 gi|529043696|ref|YP_008369915.1| - 0.055 13.4 0.0 0.14 12.1 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain SRP54 PF00448.17 gi|529043696|ref|YP_008369915.1| - 0.087 12.2 0.2 0.18 11.1 0.1 1.5 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain SbcCD_C PF13558.1 gi|529043696|ref|YP_008369915.1| - 0.088 12.7 0.1 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_13 PF13166.1 gi|529043696|ref|YP_008369915.1| - 0.13 10.6 0.7 0.37 9.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|529043696|ref|YP_008369915.1| - 0.18 11.3 0.5 0.43 10.1 0.3 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain Tmemb_14 PF03647.8 gi|529043698|ref|YP_008369917.1| - 0.46 10.9 4.9 0.23 11.8 1.9 1.6 1 1 0 1 1 1 0 Transmembrane proteins 14C DDE_Tnp_1 PF01609.16 gi|529043699|ref|YP_008369918.1| - 1.3e-17 64.0 0.0 1.8e-17 63.5 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|529043699|ref|YP_008369918.1| - 0.027 14.4 0.0 0.053 13.5 0.0 1.4 1 0 0 1 1 1 0 Transposase DDE domain DUF772 PF05598.6 gi|529043699|ref|YP_008369918.1| - 0.058 13.3 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Transposase domain (DUF772) PDDEXK_1 PF12705.2 gi|529043700|ref|YP_008369919.1| - 3.4e-17 62.6 1.7 5.4e-17 62.0 0.3 1.9 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily UvrD-helicase PF00580.16 gi|529043701|ref|YP_008369920.1| - 2.4e-50 171.6 0.7 1.7e-49 168.8 0.5 2.0 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|529043701|ref|YP_008369920.1| - 5.1e-33 114.9 0.0 3.9e-19 69.3 0.0 2.3 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.1 gi|529043701|ref|YP_008369920.1| - 1.5e-15 56.6 0.1 2.6e-13 49.5 0.0 3.3 3 0 0 3 3 3 1 Part of AAA domain PDDEXK_1 PF12705.2 gi|529043701|ref|YP_008369920.1| - 1.8e-12 47.1 2.3 2e-12 47.0 0.3 2.0 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily UvrD_C_2 PF13538.1 gi|529043701|ref|YP_008369920.1| - 1.3e-07 31.7 0.1 0.015 15.4 0.0 2.9 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_30 PF13604.1 gi|529043701|ref|YP_008369920.1| - 3.5e-05 23.4 0.1 0.00012 21.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.13 gi|529043701|ref|YP_008369920.1| - 0.0014 18.1 0.2 7.5 5.9 0.0 3.4 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase AAA_12 PF13087.1 gi|529043701|ref|YP_008369920.1| - 0.0026 17.1 0.0 0.027 13.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain DUF2800 PF10926.3 gi|529043701|ref|YP_008369920.1| - 0.01 14.9 0.0 0.022 13.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2800) AAA_22 PF13401.1 gi|529043701|ref|YP_008369920.1| - 0.031 14.4 0.1 0.11 12.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain PhoH PF02562.11 gi|529043701|ref|YP_008369920.1| - 0.082 12.1 0.0 13 4.9 0.0 2.2 2 0 0 2 2 2 0 PhoH-like protein Cas_Cas4 PF01930.12 gi|529043701|ref|YP_008369920.1| - 0.14 12.0 0.0 0.3 11.0 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function DUF83 SNF2_N PF00176.18 gi|529043702|ref|YP_008369921.1| - 1.2e-26 93.2 0.0 1.1e-24 86.7 0.0 2.2 1 1 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 gi|529043702|ref|YP_008369921.1| - 8.1e-18 64.0 0.0 2e-17 62.7 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|529043702|ref|YP_008369921.1| - 7.1e-09 35.7 0.0 5.7e-08 32.8 0.0 2.6 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|529043702|ref|YP_008369921.1| - 3.1e-06 26.7 0.0 8.6e-06 25.3 0.0 1.8 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C_4 PF13871.1 gi|529043702|ref|YP_008369921.1| - 8.5e-05 22.1 4.2 0.00038 19.9 0.0 2.9 3 0 0 3 3 3 1 Helicase_C-like DUF2075 PF09848.4 gi|529043702|ref|YP_008369921.1| - 0.0032 16.5 1.7 0.0099 14.8 0.0 2.7 3 0 0 3 3 3 1 Uncharacterized conserved protein (DUF2075) Sugarporin_N PF11471.3 gi|529043702|ref|YP_008369921.1| - 0.97 9.1 5.5 3.4 7.3 3.8 1.9 1 0 0 1 1 1 0 Maltoporin periplasmic N-terminal extension PglZ PF08665.7 gi|529043704|ref|YP_008369923.1| - 5.3e-10 39.2 0.0 1.5e-09 37.7 0.0 1.7 2 0 0 2 2 2 1 PglZ domain SMC_N PF02463.14 gi|529043705|ref|YP_008369924.1| - 3.8e-20 72.0 0.2 1.2e-19 70.4 0.1 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|529043705|ref|YP_008369924.1| - 6.5e-17 62.5 18.2 1.8e-13 51.3 12.6 3.1 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|529043705|ref|YP_008369924.1| - 8.6e-13 47.6 8.3 1.1e-11 44.0 5.8 2.7 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.1 gi|529043705|ref|YP_008369924.1| - 2.7e-11 43.9 6.2 3.8e-06 27.0 0.7 2.9 2 1 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|529043705|ref|YP_008369924.1| - 3.6e-09 36.1 0.4 2.2e-08 33.5 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|529043705|ref|YP_008369924.1| - 4.9e-08 32.3 0.0 1e-07 31.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF2813 PF11398.3 gi|529043705|ref|YP_008369924.1| - 0.00028 20.1 1.3 0.00038 19.6 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF2813) ABC_tran PF00005.22 gi|529043705|ref|YP_008369924.1| - 0.00051 20.3 0.9 0.0021 18.3 0.1 2.5 2 1 0 2 2 2 1 ABC transporter AAA_16 PF13191.1 gi|529043705|ref|YP_008369924.1| - 0.02 14.8 8.1 0.023 14.6 0.0 3.7 2 1 0 3 3 3 0 AAA ATPase domain Dynamin_N PF00350.18 gi|529043705|ref|YP_008369924.1| - 0.028 14.2 1.6 0.12 12.1 0.1 2.8 3 1 0 3 3 3 0 Dynamin family DUF258 PF03193.11 gi|529043705|ref|YP_008369924.1| - 0.1 11.7 0.1 0.27 10.4 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function, DUF258 DUF4047 PF13256.1 gi|529043705|ref|YP_008369924.1| - 2.7 7.9 10.3 0.14 12.1 0.7 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4047) DUF3571 PF12095.3 gi|529043705|ref|YP_008369924.1| - 8.8 6.6 12.0 6.3 7.1 0.9 4.0 4 0 0 4 4 4 0 Protein of unknown function (DUF3571) PspB PF06667.7 gi|529043706|ref|YP_008369925.1| - 0.095 12.6 1.2 4.9 7.1 0.4 3.1 3 0 0 3 3 3 0 Phage shock protein B TipAS PF07739.8 gi|529043706|ref|YP_008369925.1| - 0.16 12.2 4.1 1.2 9.4 0.5 2.7 1 1 1 2 2 2 0 TipAS antibiotic-recognition domain DDE_Tnp_IS66 PF03050.9 gi|529043707|ref|YP_008369926.1| - 2.2e-53 181.2 0.2 3.7e-53 180.4 0.1 1.3 1 0 0 1 1 1 1 Transposase IS66 family zf-IS66 PF13005.2 gi|529043707|ref|YP_008369926.1| - 0.00043 20.1 6.0 0.00043 20.1 4.2 2.2 2 0 0 2 2 2 1 zinc-finger binding domain of transposase IS66 Transposase_mut PF00872.13 gi|529043707|ref|YP_008369926.1| - 0.014 13.9 0.1 0.026 13.1 0.0 1.3 1 0 0 1 1 1 0 Transposase, Mutator family DASH_Spc34 PF08657.5 gi|529043707|ref|YP_008369926.1| - 0.014 15.0 0.6 0.026 14.1 0.4 1.4 1 0 0 1 1 1 0 DASH complex subunit Spc34 DZR PF12773.2 gi|529043707|ref|YP_008369926.1| - 0.016 15.0 2.9 0.038 13.8 2.0 1.6 1 0 0 1 1 1 0 Double zinc ribbon CCDC-167 PF15188.1 gi|529043707|ref|YP_008369926.1| - 0.018 14.9 1.1 0.046 13.6 0.8 1.7 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 167 Med4 PF10018.4 gi|529043707|ref|YP_008369926.1| - 0.034 13.5 0.9 0.066 12.5 0.4 1.6 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 Tropomyosin_1 PF12718.2 gi|529043707|ref|YP_008369926.1| - 0.08 12.7 5.2 0.17 11.7 3.6 1.5 1 0 0 1 1 1 0 Tropomyosin like DivIC PF04977.10 gi|529043707|ref|YP_008369926.1| - 0.081 12.4 4.7 0.069 12.6 1.3 2.2 2 0 0 2 2 2 0 Septum formation initiator XhlA PF10779.4 gi|529043707|ref|YP_008369926.1| - 0.11 12.4 2.9 0.31 10.9 2.0 1.7 1 0 0 1 1 1 0 Haemolysin XhlA SlyX PF04102.7 gi|529043707|ref|YP_008369926.1| - 0.12 12.7 3.6 0.35 11.2 2.5 1.8 1 0 0 1 1 1 0 SlyX ERM PF00769.14 gi|529043707|ref|YP_008369926.1| - 0.16 11.4 5.1 0.41 10.1 3.5 1.7 1 0 0 1 1 1 0 Ezrin/radixin/moesin family Atg14 PF10186.4 gi|529043707|ref|YP_008369926.1| - 0.18 10.7 0.7 0.32 9.9 0.5 1.4 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Med9 PF07544.8 gi|529043707|ref|YP_008369926.1| - 0.24 11.1 2.8 0.64 9.7 1.9 1.7 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 Prefoldin_2 PF01920.15 gi|529043707|ref|YP_008369926.1| - 0.24 11.1 6.1 0.65 9.7 4.2 1.7 1 0 0 1 1 1 0 Prefoldin subunit HSBP1 PF06825.7 gi|529043707|ref|YP_008369926.1| - 0.25 10.9 5.5 5.9 6.5 3.8 2.4 1 1 0 1 1 1 0 Heat shock factor binding protein 1 DDE_Tnp_IS240 PF13610.1 gi|529043707|ref|YP_008369926.1| - 0.3 11.0 1.4 0.42 10.5 0.1 1.9 2 1 0 2 2 1 0 DDE domain IncA PF04156.9 gi|529043707|ref|YP_008369926.1| - 0.47 10.0 4.6 0.2 11.2 1.4 1.6 2 0 0 2 2 1 0 IncA protein zf-FPG_IleRS PF06827.9 gi|529043707|ref|YP_008369926.1| - 0.47 10.1 4.3 13 5.5 0.1 3.2 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS UPF0449 PF15136.1 gi|529043707|ref|YP_008369926.1| - 1.7 8.8 9.1 0.83 9.8 1.2 2.7 3 0 0 3 3 2 0 Uncharacterised protein family UPF0449 Sugarporin_N PF11471.3 gi|529043707|ref|YP_008369926.1| - 2 8.1 9.5 3.9 7.2 6.6 1.5 1 0 0 1 1 1 0 Maltoporin periplasmic N-terminal extension Zn-ribbon_8 PF09723.5 gi|529043707|ref|YP_008369926.1| - 2.8 7.9 6.1 21 5.1 0.4 2.7 2 0 0 2 2 2 0 Zinc ribbon domain EntA_Immun PF08951.5 gi|529043708|ref|YP_008369927.1| - 0.11 12.6 1.6 4.8 7.3 0.0 3.3 4 0 0 4 4 4 0 Enterocin A Immunity DUF4538 PF15061.1 gi|529043709|ref|YP_008369928.1| - 0.16 11.3 0.2 0.16 11.3 0.2 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4538) zf-DHHC PF01529.15 gi|529043709|ref|YP_008369928.1| - 0.3 10.4 2.3 0.31 10.4 1.6 1.0 1 0 0 1 1 1 0 DHHC palmitoyltransferase Apolipoprotein PF01442.13 gi|529043710|ref|YP_008369929.1| - 0.027 13.9 0.2 0.05 13.1 0.1 1.4 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain ISG65-75 PF11727.3 gi|529043710|ref|YP_008369929.1| - 0.13 11.2 1.3 0.27 10.2 0.9 1.4 1 0 0 1 1 1 0 Invariant surface glycoprotein HisKA_3 PF07730.8 gi|529043710|ref|YP_008369929.1| - 3.9 7.8 7.2 17 5.8 0.1 3.0 3 1 1 4 4 4 0 Histidine kinase DUF883 PF05957.8 gi|529043710|ref|YP_008369929.1| - 4.8 7.6 7.9 1.8 9.0 1.6 2.9 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF883) DivIVA PF05103.8 gi|529043710|ref|YP_008369929.1| - 8.9 6.3 7.6 0.49 10.4 0.9 2.1 2 0 0 2 2 2 0 DivIVA protein Glyoxalase PF00903.20 gi|529043711|ref|YP_008369930.1| - 0.0064 16.4 0.3 0.18 11.7 0.0 2.5 2 1 0 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NTP_transf_5 PF14907.1 gi|529043711|ref|YP_008369930.1| - 0.023 14.0 1.0 0.047 13.0 0.2 1.9 1 1 1 2 2 2 0 Uncharacterised nucleotidyltransferase MarR_2 PF12802.2 gi|529043712|ref|YP_008369931.1| - 4.7e-16 58.2 0.8 1.1e-07 31.3 0.2 2.5 2 0 0 2 2 2 2 MarR family TrmB PF01978.14 gi|529043712|ref|YP_008369931.1| - 1.3e-15 56.8 0.5 1.9e-08 33.8 0.0 2.6 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|529043712|ref|YP_008369931.1| - 6.1e-13 48.2 0.2 8.5e-06 25.3 0.0 2.5 2 0 0 2 2 2 2 MarR family HTH_24 PF13412.1 gi|529043712|ref|YP_008369931.1| - 1.1e-10 40.6 0.0 7e-05 22.1 0.0 2.6 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.14 gi|529043712|ref|YP_008369931.1| - 6.4e-10 38.8 1.3 0.00096 19.0 0.1 2.8 2 0 0 2 2 2 2 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.1 gi|529043712|ref|YP_008369931.1| - 1.3e-09 37.7 0.1 4e-06 26.5 0.0 2.6 2 0 0 2 2 2 2 Crp-like helix-turn-helix domain HTH_IclR PF09339.5 gi|529043712|ref|YP_008369931.1| - 2.3e-09 36.7 6.7 4.1e-08 32.6 0.1 3.3 3 0 0 3 3 3 1 IclR helix-turn-helix domain Rrf2 PF02082.15 gi|529043712|ref|YP_008369931.1| - 7.8e-09 35.5 0.5 0.00058 19.9 0.0 2.5 2 0 0 2 2 2 2 Transcriptional regulator HTH_5 PF01022.15 gi|529043712|ref|YP_008369931.1| - 1e-08 34.7 0.9 1.6e-05 24.4 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|529043712|ref|YP_008369931.1| - 5.8e-08 32.2 0.1 4.5e-06 26.2 0.0 2.7 2 0 0 2 2 2 1 HTH domain HTH_20 PF12840.2 gi|529043712|ref|YP_008369931.1| - 8.8e-08 31.8 1.3 0.00042 20.0 0.0 2.5 2 0 0 2 2 2 2 Helix-turn-helix domain GntR PF00392.16 gi|529043712|ref|YP_008369931.1| - 7.4e-07 28.5 0.1 0.0018 17.6 0.0 3.3 3 0 0 3 3 3 1 Bacterial regulatory proteins, gntR family HTH_27 PF13463.1 gi|529043712|ref|YP_008369931.1| - 4.5e-06 26.8 0.3 0.082 13.2 0.0 3.4 4 0 0 4 4 2 2 Winged helix DNA-binding domain HTH_23 PF13384.1 gi|529043712|ref|YP_008369931.1| - 4.8e-06 26.0 0.1 0.0029 17.1 0.0 2.9 2 0 0 2 2 2 1 Homeodomain-like domain HTH_29 PF13551.1 gi|529043712|ref|YP_008369931.1| - 9.3e-06 25.7 0.1 0.12 12.5 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn helix HTH_28 PF13518.1 gi|529043712|ref|YP_008369931.1| - 6.3e-05 22.8 0.1 0.1 12.6 0.0 3.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|529043712|ref|YP_008369931.1| - 0.00013 21.4 0.1 0.009 15.5 0.0 3.0 3 0 0 3 3 2 1 Helix-turn-helix domain Penicillinase_R PF03965.11 gi|529043712|ref|YP_008369931.1| - 0.00038 20.5 0.2 0.32 11.0 0.0 2.9 3 1 0 3 3 2 1 Penicillinase repressor HTH_45 PF14947.1 gi|529043712|ref|YP_008369931.1| - 0.0013 18.5 0.0 0.014 15.1 0.0 2.4 3 0 0 3 3 2 1 Winged helix-turn-helix HTH_10 PF04967.7 gi|529043712|ref|YP_008369931.1| - 0.0013 18.3 0.0 0.21 11.1 0.0 3.2 3 0 0 3 3 3 1 HTH DNA binding domain HTH_AsnC-type PF13404.1 gi|529043712|ref|YP_008369931.1| - 0.0014 18.0 0.9 0.0083 15.6 0.1 2.6 3 0 0 3 3 2 1 AsnC-type helix-turn-helix domain z-alpha PF02295.12 gi|529043712|ref|YP_008369931.1| - 0.0018 17.9 0.0 0.0092 15.7 0.0 2.1 2 0 0 2 2 2 1 Adenosine deaminase z-alpha domain DUF2250 PF10007.4 gi|529043712|ref|YP_008369931.1| - 0.0042 16.9 0.2 4.5 7.2 0.0 2.5 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) PaaX PF07848.7 gi|529043712|ref|YP_008369931.1| - 0.0045 16.9 0.2 1.8 8.6 0.0 2.4 2 0 0 2 2 2 1 PaaX-like protein LexA_DNA_bind PF01726.11 gi|529043712|ref|YP_008369931.1| - 0.0055 16.2 0.0 0.11 12.0 0.0 2.5 2 0 0 2 2 2 1 LexA DNA binding domain Ftsk_gamma PF09397.5 gi|529043712|ref|YP_008369931.1| - 0.006 16.2 0.1 0.022 14.4 0.0 2.0 2 0 0 2 2 1 1 Ftsk gamma domain HTH_1 PF00126.22 gi|529043712|ref|YP_008369931.1| - 0.0076 15.9 0.5 3.2 7.5 0.1 2.5 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family Phage_rep_org_N PF09681.5 gi|529043712|ref|YP_008369931.1| - 0.0091 15.5 0.0 0.23 11.0 0.0 2.2 2 0 0 2 2 2 1 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_DeoR PF08220.7 gi|529043712|ref|YP_008369931.1| - 0.011 15.1 0.0 0.035 13.6 0.0 1.9 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain FeoC PF09012.5 gi|529043712|ref|YP_008369931.1| - 0.012 15.3 0.1 1.1 9.0 0.1 2.4 2 0 0 2 2 2 0 FeoC like transcriptional regulator DUF4423 PF14394.1 gi|529043712|ref|YP_008369931.1| - 0.012 15.1 0.1 1.3 8.5 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) HTH_36 PF13730.1 gi|529043712|ref|YP_008369931.1| - 0.018 15.1 0.0 0.037 14.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain RPA_C PF08784.6 gi|529043712|ref|YP_008369931.1| - 0.022 15.1 0.0 0.9 9.9 0.0 2.3 2 0 0 2 2 2 0 Replication protein A C terminal HTH_Tnp_4 PF13613.1 gi|529043712|ref|YP_008369931.1| - 0.024 14.1 0.9 0.27 10.7 0.1 2.5 2 0 0 2 2 2 0 Helix-turn-helix of DDE superfamily endonuclease Sulfolobus_pRN PF05584.6 gi|529043712|ref|YP_008369931.1| - 0.033 14.1 0.1 0.26 11.2 0.0 2.5 3 0 0 3 3 2 0 Sulfolobus plasmid regulatory protein HTH_34 PF13601.1 gi|529043712|ref|YP_008369931.1| - 0.034 14.1 0.1 1.3 9.1 0.0 2.3 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_CodY PF08222.6 gi|529043712|ref|YP_008369931.1| - 0.036 13.4 0.0 0.15 11.4 0.0 1.9 2 0 0 2 2 2 0 CodY helix-turn-helix domain HTH_17 PF12728.2 gi|529043712|ref|YP_008369931.1| - 0.037 14.2 1.5 12 6.1 0.0 3.4 5 0 0 5 5 2 0 Helix-turn-helix domain SpoIIID PF12116.3 gi|529043712|ref|YP_008369931.1| - 0.057 13.3 0.0 0.31 11.0 0.0 2.2 2 0 0 2 2 1 0 Stage III sporulation protein D HTH_41 PF14502.1 gi|529043712|ref|YP_008369931.1| - 0.058 13.0 0.2 10 5.8 0.0 2.7 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_7 PF02796.10 gi|529043712|ref|YP_008369931.1| - 0.06 13.2 0.0 0.15 11.9 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase RepL PF05732.6 gi|529043712|ref|YP_008369931.1| - 0.077 12.2 0.0 0.2 10.8 0.0 1.8 1 1 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_30 PF13556.1 gi|529043712|ref|YP_008369931.1| - 0.12 12.0 0.2 0.23 11.0 0.2 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain FaeA PF04703.7 gi|529043712|ref|YP_008369931.1| - 0.26 11.4 3.3 0.31 11.2 0.1 2.5 2 0 0 2 2 2 0 FaeA-like protein AFG1_ATPase PF03969.11 gi|529043714|ref|YP_008369933.1| - 0.0049 15.7 0.0 0.011 14.6 0.0 1.5 1 0 0 1 1 1 1 AFG1-like ATPase HEPN PF05168.9 gi|529043714|ref|YP_008369933.1| - 0.014 15.2 0.1 0.1 12.5 0.0 2.6 1 0 0 1 1 1 0 HEPN domain DUF1415 PF07209.7 gi|529043714|ref|YP_008369933.1| - 0.04 13.6 0.0 0.11 12.1 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1415) DUF1788 PF08747.6 gi|529043715|ref|YP_008369934.1| - 2.7e-13 49.8 0.0 3.7e-13 49.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1788) EIIA-man PF03610.11 gi|529043715|ref|YP_008369934.1| - 0.00082 19.4 0.0 0.0013 18.8 0.0 1.3 1 0 0 1 1 1 1 PTS system fructose IIA component Tautomerase PF01361.16 gi|529043715|ref|YP_008369934.1| - 0.073 12.6 0.3 0.18 11.4 0.2 1.6 1 0 0 1 1 1 0 Tautomerase enzyme DUF2538 PF10804.3 gi|529043715|ref|YP_008369934.1| - 0.15 11.9 0.0 0.2 11.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2538) ABC_tran PF00005.22 gi|529043716|ref|YP_008369935.1| - 0.084 13.1 0.0 0.31 11.3 0.0 2.0 1 0 0 1 1 1 0 ABC transporter HWE_HK PF07536.9 gi|529043716|ref|YP_008369935.1| - 0.65 10.4 3.3 5.2 7.5 0.2 3.1 3 0 0 3 3 3 0 HWE histidine kinase HTH_32 PF13565.1 gi|529043717|ref|YP_008369936.1| - 0.1 13.3 0.2 11 6.9 0.0 2.7 2 1 1 3 3 3 0 Homeodomain-like domain DUF1819 PF08849.6 gi|529043717|ref|YP_008369936.1| - 0.17 11.2 0.2 0.28 10.5 0.0 1.4 2 0 0 2 2 2 0 Putative inner membrane protein (DUF1819) COX1 PF00115.15 gi|529076461|ref|YP_008375464.1| - 5.5e-159 529.5 57.8 7.3e-159 529.1 40.1 1.1 1 0 0 1 1 1 1 Cytochrome C and Quinol oxidase polypeptide I DUF320 PF03777.8 gi|529076462|ref|YP_008375465.1| - 0.013 15.2 0.1 0.023 14.4 0.1 1.4 1 0 0 1 1 1 0 Small secreted domain (DUF320) DUF3154 PF11351.3 gi|529076462|ref|YP_008375465.1| - 0.034 13.8 0.3 0.045 13.5 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3154) DUF2721 PF11026.3 gi|529076462|ref|YP_008375465.1| - 0.13 11.8 0.9 0.16 11.6 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) RDD PF06271.7 gi|529076462|ref|YP_008375465.1| - 0.15 11.9 1.0 0.17 11.7 0.7 1.1 1 0 0 1 1 1 0 RDD family Cyt_c_ox_IV PF12270.3 gi|529076463|ref|YP_008375466.1| - 0.037 13.7 1.3 0.037 13.7 0.9 2.2 1 1 1 3 3 3 0 Cytochrome c oxidase subunit IV DUF4131 PF13567.1 gi|529076463|ref|YP_008375466.1| - 0.37 10.1 3.3 0.4 10.0 1.7 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) CENP-F_leu_zip PF10473.4 gi|529076464|ref|YP_008375467.1| - 1.8e-05 24.6 7.3 3.2e-05 23.8 5.1 1.3 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Mnd1 PF03962.10 gi|529076464|ref|YP_008375467.1| - 2.1e-05 24.2 3.9 4.5e-05 23.1 2.7 1.5 1 0 0 1 1 1 1 Mnd1 family IncA PF04156.9 gi|529076464|ref|YP_008375467.1| - 2.2e-05 24.1 4.0 3.7e-05 23.3 2.8 1.2 1 0 0 1 1 1 1 IncA protein V_ATPase_I PF01496.14 gi|529076464|ref|YP_008375467.1| - 0.0001 20.3 1.4 0.00015 19.8 1.0 1.1 1 0 0 1 1 1 1 V-type ATPase 116kDa subunit family Tropomyosin PF00261.15 gi|529076464|ref|YP_008375467.1| - 0.00016 20.8 7.9 0.00032 19.8 5.5 1.5 1 0 0 1 1 1 1 Tropomyosin ERM PF00769.14 gi|529076464|ref|YP_008375467.1| - 0.00021 20.8 6.2 0.00021 20.8 4.3 2.4 2 1 0 2 2 1 1 Ezrin/radixin/moesin family DivIC PF04977.10 gi|529076464|ref|YP_008375467.1| - 0.0003 20.2 9.6 0.037 13.4 0.3 2.3 1 1 1 2 2 2 2 Septum formation initiator DUF972 PF06156.8 gi|529076464|ref|YP_008375467.1| - 0.0027 18.0 2.3 0.0089 16.3 1.2 2.2 2 0 0 2 2 1 1 Protein of unknown function (DUF972) ATG16 PF08614.6 gi|529076464|ref|YP_008375467.1| - 0.0032 17.3 5.4 0.0032 17.3 3.8 2.3 2 1 0 2 2 1 1 Autophagy protein 16 (ATG16) APG6 PF04111.7 gi|529076464|ref|YP_008375467.1| - 0.0035 16.4 4.7 0.006 15.6 3.3 1.3 1 0 0 1 1 1 1 Autophagy protein Apg6 Cep57_CLD_2 PF14197.1 gi|529076464|ref|YP_008375467.1| - 0.0035 17.2 15.6 0.008 16.1 10.8 1.5 1 0 0 1 1 1 1 Centrosome localisation domain of PPC89 DUF342 PF03961.8 gi|529076464|ref|YP_008375467.1| - 0.0036 15.7 0.8 0.0057 15.1 0.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF342) DUF4200 PF13863.1 gi|529076464|ref|YP_008375467.1| - 0.0059 16.5 8.5 0.0059 16.5 5.9 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4200) TMF_DNA_bd PF12329.3 gi|529076464|ref|YP_008375467.1| - 0.0065 16.2 10.5 0.014 15.1 7.3 1.5 1 0 0 1 1 1 1 TATA element modulatory factor 1 DNA binding DUF3584 PF12128.3 gi|529076464|ref|YP_008375467.1| - 0.0068 13.8 7.1 0.012 13.0 4.9 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) Fmp27_WPPW PF10359.4 gi|529076464|ref|YP_008375467.1| - 0.0079 14.6 1.7 0.017 13.5 1.1 1.5 1 0 0 1 1 1 1 RNA pol II promoter Fmp27 protein domain AAA_13 PF13166.1 gi|529076464|ref|YP_008375467.1| - 0.013 14.0 1.0 0.019 13.4 0.7 1.1 1 0 0 1 1 1 0 AAA domain Cluap1 PF10234.4 gi|529076464|ref|YP_008375467.1| - 0.014 14.6 1.1 0.023 13.8 0.8 1.2 1 0 0 1 1 1 0 Clusterin-associated protein-1 CCDC155 PF14662.1 gi|529076464|ref|YP_008375467.1| - 0.015 14.9 6.7 0.027 14.0 4.7 1.3 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 DUF3450 PF11932.3 gi|529076464|ref|YP_008375467.1| - 0.017 14.4 2.6 0.034 13.4 1.8 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) TBPIP PF07106.8 gi|529076464|ref|YP_008375467.1| - 0.019 14.5 3.0 0.032 13.7 2.1 1.2 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF2968 PF11180.3 gi|529076464|ref|YP_008375467.1| - 0.02 14.2 2.8 0.053 12.9 2.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2968) DUF4201 PF13870.1 gi|529076464|ref|YP_008375467.1| - 0.031 13.7 6.0 0.039 13.3 2.6 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4201) V-SNARE PF05008.10 gi|529076464|ref|YP_008375467.1| - 0.031 14.4 3.8 0.08 13.1 2.6 1.6 1 0 0 1 1 1 0 Vesicle transport v-SNARE protein N-terminus Seryl_tRNA_N PF02403.17 gi|529076464|ref|YP_008375467.1| - 0.031 14.2 7.2 0.66 10.0 0.2 2.5 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF2730 PF10805.3 gi|529076464|ref|YP_008375467.1| - 0.032 13.9 4.2 0.072 12.8 2.9 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) DUF16 PF01519.11 gi|529076464|ref|YP_008375467.1| - 0.039 14.1 2.2 0.09 13.0 1.5 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF16 DUF4140 PF13600.1 gi|529076464|ref|YP_008375467.1| - 0.042 14.2 12.6 0.41 11.1 8.0 2.9 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) GAS PF13851.1 gi|529076464|ref|YP_008375467.1| - 0.068 12.3 2.6 0.11 11.6 1.8 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding bZIP_1 PF00170.16 gi|529076464|ref|YP_008375467.1| - 0.071 13.0 5.9 0.2 11.6 4.0 1.9 1 1 0 1 1 1 0 bZIP transcription factor DUF1664 PF07889.7 gi|529076464|ref|YP_008375467.1| - 0.071 12.9 1.0 0.14 11.9 0.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Atg14 PF10186.4 gi|529076464|ref|YP_008375467.1| - 0.084 11.8 2.8 0.13 11.1 1.9 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 AAA_23 PF13476.1 gi|529076464|ref|YP_008375467.1| - 0.13 12.5 1.8 0.22 11.7 1.2 1.3 1 0 0 1 1 1 0 AAA domain Prefoldin_2 PF01920.15 gi|529076464|ref|YP_008375467.1| - 0.14 11.9 7.2 0.35 10.6 4.9 1.8 1 1 0 1 1 1 0 Prefoldin subunit Bap31 PF05529.7 gi|529076464|ref|YP_008375467.1| - 0.14 11.5 2.2 0.3 10.5 1.5 1.5 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like DUF4071 PF13281.1 gi|529076464|ref|YP_008375467.1| - 0.26 10.0 1.7 0.47 9.2 1.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4071) DUF904 PF06005.7 gi|529076464|ref|YP_008375467.1| - 0.27 11.5 7.6 0.63 10.3 5.3 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF904) Prefoldin PF02996.12 gi|529076464|ref|YP_008375467.1| - 0.44 10.2 4.1 1.1 8.9 2.8 1.7 1 0 0 1 1 1 0 Prefoldin subunit Ax_dynein_light PF10211.4 gi|529076464|ref|YP_008375467.1| - 0.6 9.9 8.4 1.2 8.8 5.6 1.6 1 1 0 1 1 1 0 Axonemal dynein light chain ADIP PF11559.3 gi|529076464|ref|YP_008375467.1| - 0.7 9.7 7.4 1.7 8.5 5.1 1.6 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding CorA PF01544.13 gi|529076464|ref|YP_008375467.1| - 0.75 8.7 2.0 1.3 7.9 1.4 1.3 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein TEX13 PF15186.1 gi|529076464|ref|YP_008375467.1| - 1.1 8.8 4.7 2 7.9 3.3 1.3 1 0 0 1 1 1 0 Testis-expressed sequence 13 protein family FlaC_arch PF05377.6 gi|529076464|ref|YP_008375467.1| - 1.1 9.1 4.1 3.8 7.4 2.7 2.0 1 1 0 1 1 1 0 Flagella accessory protein C (FlaC) SlyX PF04102.7 gi|529076464|ref|YP_008375467.1| - 1.6 9.1 8.2 5.3 7.4 5.7 2.0 1 0 0 1 1 1 0 SlyX CCDC-167 PF15188.1 gi|529076464|ref|YP_008375467.1| - 1.8 8.5 10.6 5.3 7.0 7.3 1.8 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 167 XhlA PF10779.4 gi|529076464|ref|YP_008375467.1| - 4.2 7.3 6.9 13 5.8 4.7 1.9 1 1 0 1 1 1 0 Haemolysin XhlA M PF02370.11 gi|529076464|ref|YP_008375467.1| - 6.5 7.4 8.6 23 5.8 0.3 3.4 1 1 2 3 3 3 0 M protein repeat HTH_12 PF08461.5 gi|529076465|ref|YP_008375468.1| - 0.0077 15.9 0.0 0.011 15.5 0.0 1.3 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_24 PF13412.1 gi|529076465|ref|YP_008375468.1| - 0.027 13.8 0.0 0.042 13.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|529076465|ref|YP_008375468.1| - 0.03 14.0 0.0 0.12 12.1 0.0 1.8 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB Phage_rep_org_N PF09681.5 gi|529076465|ref|YP_008375468.1| - 0.03 13.8 0.1 0.033 13.7 0.0 1.2 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_20 PF12840.2 gi|529076465|ref|YP_008375468.1| - 0.11 12.2 0.0 0.21 11.4 0.0 1.5 2 0 0 2 2 2 0 Helix-turn-helix domain Adenylsucc_synt PF00709.16 gi|529076466|ref|YP_008375469.1| - 3.8e-145 483.7 0.0 4.6e-145 483.4 0.0 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase GFO_IDH_MocA PF01408.17 gi|529076467|ref|YP_008375470.1| - 2e-18 67.0 0.1 3.5e-18 66.2 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Imm12 PF15589.1 gi|529076467|ref|YP_008375470.1| - 0.14 11.9 0.6 5.7 6.6 0.0 2.3 2 0 0 2 2 2 0 Immunity protein 12 Trm112p PF03966.11 gi|529076468|ref|YP_008375471.1| - 1.5e-10 41.2 0.6 2.6e-10 40.5 0.4 1.4 1 1 0 1 1 1 1 Trm112p-like protein zf-dskA_traR PF01258.12 gi|529076468|ref|YP_008375471.1| - 0.074 12.8 0.1 0.12 12.1 0.1 1.3 1 0 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger DUF1451 PF07295.6 gi|529076468|ref|YP_008375471.1| - 0.089 12.5 0.0 0.099 12.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) DUF3040 PF11239.3 gi|529076469|ref|YP_008375472.1| - 0.013 15.5 2.4 0.028 14.4 1.6 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) tRNA-synt_1e PF01406.14 gi|529076471|ref|YP_008375474.1| - 5.9e-104 347.4 0.0 1.8e-102 342.5 0.0 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain DALR_2 PF09190.6 gi|529076471|ref|YP_008375474.1| - 7.2e-10 38.9 0.2 2.1e-09 37.5 0.0 1.9 2 0 0 2 2 2 1 DALR domain tRNA-synt_1g PF09334.6 gi|529076471|ref|YP_008375474.1| - 3.2e-09 35.9 0.0 0.00043 19.0 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1f PF01921.13 gi|529076471|ref|YP_008375474.1| - 2.2e-05 23.3 0.0 0.013 14.1 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) UVR PF02151.14 gi|529076471|ref|YP_008375474.1| - 0.01 15.3 0.1 0.034 13.6 0.1 1.9 1 0 0 1 1 1 0 UvrB/uvrC motif tRNA-synt_1 PF00133.17 gi|529076471|ref|YP_008375474.1| - 0.016 13.2 0.1 0.039 11.9 0.0 1.6 2 0 0 2 2 2 0 tRNA synthetases class I (I, L, M and V) tRNA-synt_1d PF00750.14 gi|529076471|ref|YP_008375474.1| - 0.021 13.6 0.1 1.8 7.3 0.0 2.4 1 1 1 2 2 2 0 tRNA synthetases class I (R) Ion_trans_2 PF07885.11 gi|529076472|ref|YP_008375475.1| - 0.15 11.7 4.3 0.17 11.6 3.0 1.1 1 0 0 1 1 1 0 Ion channel DUF3040 PF11239.3 gi|529076472|ref|YP_008375475.1| - 5.3 7.1 9.6 6.3 6.9 6.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) CorA PF01544.13 gi|529076473|ref|YP_008375476.1| - 1.6e-73 247.2 0.0 1.9e-73 247.0 0.0 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein DUF2742 PF10888.3 gi|529076473|ref|YP_008375476.1| - 0.087 12.7 0.2 0.21 11.5 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2742) TctA PF01970.11 gi|529076474|ref|YP_008375477.1| - 1.5e-63 214.6 46.4 1.8e-63 214.3 32.2 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family SOR_SNZ PF01680.12 gi|529076475|ref|YP_008375478.1| - 4.2e-102 340.1 7.2 5.6e-102 339.7 5.0 1.2 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.9 gi|529076475|ref|YP_008375478.1| - 1.6e-09 37.2 4.5 1.8e-05 23.9 0.3 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG OMPdecase PF00215.19 gi|529076475|ref|YP_008375478.1| - 0.002 17.5 1.3 0.45 9.8 0.1 2.5 2 1 1 3 3 3 2 Orotidine 5'-phosphate decarboxylase / HUMPS family IGPS PF00218.16 gi|529076475|ref|YP_008375478.1| - 0.01 14.9 0.2 0.07 12.1 0.0 2.2 3 0 0 3 3 3 1 Indole-3-glycerol phosphate synthase Dus PF01207.12 gi|529076475|ref|YP_008375478.1| - 0.01 14.7 2.9 0.63 8.8 0.4 2.2 1 1 1 2 2 2 2 Dihydrouridine synthase (Dus) MS_channel PF00924.13 gi|529076476|ref|YP_008375479.1| - 1.9e-44 151.4 0.8 2.5e-44 151.1 0.0 1.6 2 0 0 2 2 2 1 Mechanosensitive ion channel GHMP_kinases_N PF00288.21 gi|529076477|ref|YP_008375480.1| - 1.2e-14 54.1 1.1 2.9e-14 52.8 0.8 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|529076477|ref|YP_008375480.1| - 2.3e-06 27.6 0.0 5.4e-06 26.5 0.0 1.7 1 0 0 1 1 1 1 GHMP kinases C terminal HATPase_c PF02518.21 gi|529076478|ref|YP_008375481.1| - 2.1e-15 56.3 0.0 4.3e-15 55.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|529076478|ref|YP_008375481.1| - 1.9e-05 24.5 1.1 1.9e-05 24.5 0.8 2.8 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.1 gi|529076478|ref|YP_008375481.1| - 5.6e-05 22.9 0.0 0.00015 21.5 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain GAF_3 PF13492.1 gi|529076478|ref|YP_008375481.1| - 7.8e-05 22.7 0.1 0.00022 21.3 0.0 1.8 1 0 0 1 1 1 1 GAF domain PAS_9 PF13426.1 gi|529076478|ref|YP_008375481.1| - 0.00052 20.3 0.0 0.0044 17.3 0.0 2.5 1 1 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|529076478|ref|YP_008375481.1| - 0.0011 18.9 6.2 0.0041 17.1 0.3 3.5 3 1 0 3 3 2 1 PAS fold GAF_2 PF13185.1 gi|529076478|ref|YP_008375481.1| - 0.0023 18.4 1.9 0.0046 17.4 0.2 2.4 2 0 0 2 2 2 1 GAF domain PAS_8 PF13188.1 gi|529076478|ref|YP_008375481.1| - 0.0024 17.6 0.1 0.011 15.5 0.0 2.2 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|529076478|ref|YP_008375481.1| - 0.009 15.7 0.2 0.053 13.2 0.0 2.4 2 1 0 2 2 2 1 PAS fold HATPase_c_5 PF14501.1 gi|529076478|ref|YP_008375481.1| - 0.073 12.7 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 GHKL domain Cluap1 PF10234.4 gi|529076478|ref|YP_008375481.1| - 0.19 10.8 0.2 0.32 10.1 0.1 1.2 1 0 0 1 1 1 0 Clusterin-associated protein-1 Amino_oxidase PF01593.19 gi|529076479|ref|YP_008375482.1| - 8.2e-19 67.9 0.1 6.2e-15 55.2 0.0 2.7 2 1 0 2 2 2 2 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|529076479|ref|YP_008375482.1| - 5.4e-15 55.1 0.1 1.2e-14 54.0 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|529076479|ref|YP_008375482.1| - 1e-12 47.6 1.0 1.2e-07 30.9 0.1 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|529076479|ref|YP_008375482.1| - 5.9e-08 31.9 0.6 2.1e-05 23.5 0.1 2.1 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.9 gi|529076479|ref|YP_008375482.1| - 5.3e-06 26.4 0.0 1e-05 25.4 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|529076479|ref|YP_008375482.1| - 1.4e-05 24.3 0.1 7.6e-05 21.9 0.0 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|529076479|ref|YP_008375482.1| - 0.00045 20.5 0.3 0.00045 20.5 0.2 1.7 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|529076479|ref|YP_008375482.1| - 0.00046 20.2 0.1 0.00073 19.6 0.1 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|529076479|ref|YP_008375482.1| - 0.0017 16.9 0.8 0.0025 16.3 0.6 1.2 1 0 0 1 1 1 1 HI0933-like protein NAD_binding_9 PF13454.1 gi|529076479|ref|YP_008375482.1| - 0.0019 18.0 0.1 0.037 13.8 0.0 2.3 2 0 0 2 2 2 1 FAD-NAD(P)-binding GIDA PF01134.17 gi|529076479|ref|YP_008375482.1| - 0.0025 16.7 0.1 0.0039 16.1 0.1 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A FMO-like PF00743.14 gi|529076479|ref|YP_008375482.1| - 0.0079 14.4 0.0 0.012 13.8 0.0 1.2 1 0 0 1 1 1 1 Flavin-binding monooxygenase-like AlaDh_PNT_C PF01262.16 gi|529076479|ref|YP_008375482.1| - 0.014 14.9 0.6 0.026 14.1 0.4 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.12 gi|529076479|ref|YP_008375482.1| - 0.015 14.3 0.3 0.14 11.2 0.2 2.2 2 0 0 2 2 2 0 Thi4 family TrkA_N PF02254.13 gi|529076479|ref|YP_008375482.1| - 0.027 14.4 0.0 0.052 13.5 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain FAD_binding_3 PF01494.14 gi|529076479|ref|YP_008375482.1| - 0.035 13.1 1.0 0.058 12.4 0.7 1.3 1 0 0 1 1 1 0 FAD binding domain F420_oxidored PF03807.12 gi|529076479|ref|YP_008375482.1| - 0.08 13.3 0.2 0.46 10.9 0.0 2.2 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Trp_halogenase PF04820.9 gi|529076479|ref|YP_008375482.1| - 0.11 11.1 0.4 0.15 10.6 0.3 1.2 1 0 0 1 1 1 0 Tryptophan halogenase Lycopene_cycl PF05834.7 gi|529076479|ref|YP_008375482.1| - 0.11 11.4 0.1 0.21 10.4 0.0 1.4 1 0 0 1 1 1 0 Lycopene cyclase protein NAD_binding_10 PF13460.1 gi|529076479|ref|YP_008375482.1| - 0.12 12.3 0.3 0.12 12.3 0.2 1.8 2 0 0 2 2 2 0 NADH(P)-binding YjeF_N PF03853.10 gi|529076479|ref|YP_008375482.1| - 0.14 11.7 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 YjeF-related protein N-terminus 3HCDH_N PF02737.13 gi|529076479|ref|YP_008375482.1| - 0.14 11.7 0.0 0.28 10.8 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|529076479|ref|YP_008375482.1| - 0.22 11.2 0.2 0.37 10.5 0.1 1.3 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus GIDE PF12483.3 gi|529076480|ref|YP_008375483.1| - 1.5e-07 30.9 0.2 5.7e-06 25.7 0.2 2.3 1 1 0 1 1 1 1 E3 Ubiquitin ligase Pyr_redox_2 PF07992.9 gi|529076482|ref|YP_008375485.1| - 3.8e-33 115.0 0.4 4.7e-33 114.7 0.3 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|529076482|ref|YP_008375485.1| - 4.2e-11 43.0 0.8 1.3e-05 25.5 0.0 3.4 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|529076482|ref|YP_008375485.1| - 2.6e-05 24.3 0.4 0.00012 22.1 0.3 2.1 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|529076482|ref|YP_008375485.1| - 0.0043 15.5 0.0 0.066 11.6 0.0 2.3 3 0 0 3 3 3 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|529076482|ref|YP_008375485.1| - 0.0058 16.6 0.8 0.77 9.8 0.0 3.4 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|529076482|ref|YP_008375485.1| - 0.0076 15.1 7.3 1.3 7.8 0.0 3.7 4 1 0 5 5 5 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|529076482|ref|YP_008375485.1| - 0.0081 15.0 0.9 11 4.7 0.1 3.1 2 1 1 3 3 3 2 FAD binding domain Amino_oxidase PF01593.19 gi|529076482|ref|YP_008375485.1| - 0.042 12.9 0.0 0.066 12.2 0.0 1.2 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase Reductase_C PF14759.1 gi|529076482|ref|YP_008375485.1| - 0.054 13.8 0.0 0.23 11.8 0.0 2.1 1 0 0 1 1 1 0 Reductase C-terminal NAD_binding_9 PF13454.1 gi|529076482|ref|YP_008375485.1| - 1.8 8.3 4.6 2.3 7.9 0.0 2.9 4 0 0 4 4 4 0 FAD-NAD(P)-binding UBN2 PF14223.1 gi|529076486|ref|YP_008375489.1| - 0.057 13.2 0.0 0.071 12.9 0.0 1.1 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type DEK_C PF08766.6 gi|529076486|ref|YP_008375489.1| - 0.059 13.1 0.1 0.093 12.5 0.0 1.2 1 0 0 1 1 1 0 DEK C terminal domain TrmB PF01978.14 gi|529076486|ref|YP_008375489.1| - 0.074 12.7 0.0 0.38 10.4 0.0 2.0 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_38 PF13936.1 gi|529076486|ref|YP_008375489.1| - 0.14 11.7 0.0 0.25 10.9 0.0 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain PMT_2 PF13231.1 gi|529076487|ref|YP_008375490.1| - 1.3e-12 47.8 9.6 1.3e-12 47.8 6.7 3.3 3 1 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase CPSase_L_D2 PF02786.12 gi|529076488|ref|YP_008375491.1| - 2.5e-99 330.8 0.4 9.2e-63 211.3 0.0 2.2 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|529076488|ref|YP_008375491.1| - 3.4e-44 149.4 0.3 6.5e-22 77.7 0.0 2.6 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, N-terminal domain ATP-grasp_4 PF13535.1 gi|529076488|ref|YP_008375491.1| - 1.7e-33 115.8 0.0 2.6e-17 63.1 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|529076488|ref|YP_008375491.1| - 3.6e-27 94.9 0.0 3.7e-12 45.6 0.0 3.8 3 1 0 3 3 3 3 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D3 PF02787.14 gi|529076488|ref|YP_008375491.1| - 1.2e-21 76.7 0.1 2.4e-20 72.5 0.0 2.4 1 1 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATP-grasp PF02222.17 gi|529076488|ref|YP_008375491.1| - 8.2e-16 57.8 0.0 6.1e-07 28.9 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|529076488|ref|YP_008375491.1| - 3.6e-11 43.2 0.1 3.9e-05 23.5 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|529076488|ref|YP_008375491.1| - 1.4e-10 40.9 0.0 6.7e-07 28.9 0.0 2.7 2 1 0 2 2 2 2 D-ala D-ala ligase C-terminus RimK PF08443.6 gi|529076488|ref|YP_008375491.1| - 1.9e-06 27.4 0.0 0.007 15.8 0.0 2.7 2 0 0 2 2 2 2 RimK-like ATP-grasp domain HAMP PF00672.20 gi|529076488|ref|YP_008375491.1| - 0.087 13.0 0.3 2.7 8.2 0.0 3.1 3 0 0 3 3 3 0 HAMP domain DUF4231 PF14015.1 gi|529076489|ref|YP_008375492.1| - 0.013 15.4 0.7 0.019 14.9 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4231) DUF3180 PF11377.3 gi|529076489|ref|YP_008375492.1| - 0.028 14.2 1.8 0.037 13.8 1.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3180) Peptidase_M24 PF00557.19 gi|529076490|ref|YP_008375493.1| - 4.1e-43 147.3 0.5 5.2e-43 147.0 0.3 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 DZR PF12773.2 gi|529076491|ref|YP_008375494.1| - 0.0012 18.6 0.4 0.0021 17.8 0.3 1.4 1 1 0 1 1 1 1 Double zinc ribbon Nudix_N_2 PF14803.1 gi|529076491|ref|YP_008375494.1| - 0.008 15.8 1.2 1.7 8.4 0.1 2.2 2 0 0 2 2 2 2 Nudix N-terminal Zn-ribbon_8 PF09723.5 gi|529076491|ref|YP_008375494.1| - 0.011 15.6 1.9 1.7 8.6 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|529076491|ref|YP_008375494.1| - 0.015 14.7 0.1 0.95 9.0 0.1 2.3 2 1 0 2 2 2 0 zinc-ribbon domain Prim_Zn_Ribbon PF08273.7 gi|529076491|ref|YP_008375494.1| - 0.038 14.0 1.2 2.4 8.3 0.2 2.2 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase OrfB_Zn_ribbon PF07282.6 gi|529076491|ref|YP_008375494.1| - 0.043 13.4 1.7 5.3 6.7 0.2 2.1 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Elf1 PF05129.8 gi|529076491|ref|YP_008375494.1| - 0.09 12.4 0.1 0.14 11.8 0.0 1.4 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like NOB1_Zn_bind PF08772.6 gi|529076491|ref|YP_008375494.1| - 0.091 12.6 0.5 0.24 11.2 0.0 1.8 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-ISL3 PF14690.1 gi|529076491|ref|YP_008375494.1| - 0.11 12.5 1.1 5.1 7.2 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TF_Zn_Ribbon PF08271.7 gi|529076491|ref|YP_008375494.1| - 0.11 11.7 2.0 1.2 8.5 0.3 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding Lar_restr_allev PF14354.1 gi|529076491|ref|YP_008375494.1| - 0.12 12.6 1.2 0.2 11.9 0.8 1.5 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-ribbon_3 PF13248.1 gi|529076491|ref|YP_008375494.1| - 0.17 11.1 5.5 0.42 9.8 0.8 2.1 1 1 1 2 2 2 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|529076491|ref|YP_008375494.1| - 0.28 10.9 1.9 3.6 7.3 0.1 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Ribosomal_L37e PF01907.14 gi|529076491|ref|YP_008375494.1| - 0.59 9.9 3.3 9.2 6.1 0.5 2.1 2 0 0 2 2 2 0 Ribosomal protein L37e DNA_ligase_ZBD PF03119.11 gi|529076491|ref|YP_008375494.1| - 0.63 9.7 4.2 0.99 9.1 0.7 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DUF35_N PF12172.3 gi|529076491|ref|YP_008375494.1| - 0.75 9.7 6.0 4.4 7.3 0.3 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn_Tnp_IS1595 PF12760.2 gi|529076491|ref|YP_008375494.1| - 1.1 9.1 4.5 22 4.9 3.2 2.2 1 1 0 1 1 1 0 Transposase zinc-ribbon domain HIT PF01230.18 gi|529076492|ref|YP_008375495.1| - 7.5e-13 48.8 0.0 1.4e-12 47.9 0.0 1.4 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|529076492|ref|YP_008375495.1| - 0.00015 21.9 0.0 0.00025 21.2 0.0 1.4 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|529076492|ref|YP_008375495.1| - 0.02 14.5 0.1 0.032 13.8 0.0 1.4 2 0 0 2 2 2 0 Protein similar to CwfJ C-terminus 1 Cation_efflux PF01545.16 gi|529076494|ref|YP_008375497.1| - 3.4e-53 180.5 1.0 4.3e-53 180.2 0.7 1.0 1 0 0 1 1 1 1 Cation efflux family adh_short PF00106.20 gi|529076495|ref|YP_008375498.1| - 7.4e-33 113.8 0.2 9.2e-33 113.5 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|529076495|ref|YP_008375498.1| - 4.4e-28 98.6 0.0 5.5e-28 98.3 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|529076495|ref|YP_008375498.1| - 4.3e-14 52.5 0.1 7.9e-14 51.7 0.1 1.3 1 0 0 1 1 1 1 KR domain 3Beta_HSD PF01073.14 gi|529076495|ref|YP_008375498.1| - 6.2e-07 28.4 0.1 8.3e-07 27.9 0.1 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Epimerase PF01370.16 gi|529076495|ref|YP_008375498.1| - 8.7e-05 22.0 0.0 0.00014 21.3 0.0 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|529076495|ref|YP_008375498.1| - 0.031 14.2 0.7 0.093 12.7 0.5 1.7 1 1 0 1 1 1 0 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|529076495|ref|YP_008375498.1| - 0.096 11.5 0.1 0.21 10.4 0.1 1.5 1 1 0 1 1 1 0 Polysaccharide biosynthesis protein PGM_PMM_I PF02878.11 gi|529076496|ref|YP_008375499.1| - 4.8e-39 132.9 0.0 9e-39 132.1 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.11 gi|529076496|ref|YP_008375499.1| - 3e-24 85.2 0.0 5.4e-24 84.4 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.11 gi|529076496|ref|YP_008375499.1| - 1.1e-23 83.5 0.1 2e-23 82.6 0.1 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|529076496|ref|YP_008375499.1| - 1.7e-15 56.7 0.1 5.9e-15 55.0 0.0 2.0 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain ACT PF01842.20 gi|529076496|ref|YP_008375499.1| - 0.019 14.4 0.0 0.11 12.0 0.0 2.2 2 0 0 2 2 2 0 ACT domain Fe-ADH PF00465.14 gi|529076496|ref|YP_008375499.1| - 0.073 11.6 0.0 0.26 9.8 0.0 1.8 2 0 0 2 2 2 0 Iron-containing alcohol dehydrogenase Fe_dep_repress PF01325.14 gi|529076497|ref|YP_008375500.1| - 2.6e-20 72.1 0.0 3.9e-20 71.5 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.10 gi|529076497|ref|YP_008375500.1| - 2.3e-18 65.6 0.4 3.8e-18 64.9 0.3 1.3 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain MarR_2 PF12802.2 gi|529076497|ref|YP_008375500.1| - 1.4e-08 34.2 0.4 3.3e-08 33.0 0.0 1.8 2 0 0 2 2 1 1 MarR family HTH_27 PF13463.1 gi|529076497|ref|YP_008375500.1| - 8.2e-06 26.0 0.1 1.3e-05 25.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|529076497|ref|YP_008375500.1| - 2.1e-05 23.9 0.0 4.2e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain GntR PF00392.16 gi|529076497|ref|YP_008375500.1| - 2.2e-05 23.8 0.0 4.8e-05 22.7 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR PF01047.17 gi|529076497|ref|YP_008375500.1| - 2.7e-05 23.7 0.0 4.4e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_29 PF13551.1 gi|529076497|ref|YP_008375500.1| - 5.5e-05 23.2 0.1 0.0017 18.4 0.0 2.0 1 1 1 2 2 2 1 Winged helix-turn helix HTH_Crp_2 PF13545.1 gi|529076497|ref|YP_008375500.1| - 5.5e-05 22.8 0.0 0.00011 21.8 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_5 PF01022.15 gi|529076497|ref|YP_008375500.1| - 8.4e-05 22.1 0.0 0.00014 21.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|529076497|ref|YP_008375500.1| - 0.00013 21.6 0.1 0.0005 19.8 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|529076497|ref|YP_008375500.1| - 0.00021 20.6 0.0 0.00033 19.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|529076497|ref|YP_008375500.1| - 0.00071 19.6 0.0 0.0011 19.0 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_1 PF00126.22 gi|529076497|ref|YP_008375500.1| - 0.00073 19.2 0.3 0.0022 17.7 0.1 1.9 2 1 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family TrmB PF01978.14 gi|529076497|ref|YP_008375500.1| - 0.0022 17.6 0.0 0.0048 16.5 0.0 1.6 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.1 gi|529076497|ref|YP_008375500.1| - 0.016 14.8 0.0 0.038 13.6 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_28 PF13518.1 gi|529076497|ref|YP_008375500.1| - 0.023 14.6 0.0 0.041 13.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2250 PF10007.4 gi|529076497|ref|YP_008375500.1| - 0.026 14.4 0.0 0.04 13.8 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) TFIIE_alpha PF02002.12 gi|529076497|ref|YP_008375500.1| - 0.029 13.8 0.0 0.046 13.2 0.0 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_45 PF14947.1 gi|529076497|ref|YP_008375500.1| - 0.081 12.7 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix FeoC PF09012.5 gi|529076497|ref|YP_008375500.1| - 0.09 12.5 0.0 0.17 11.5 0.0 1.5 1 1 0 1 1 1 0 FeoC like transcriptional regulator HTH_11 PF08279.7 gi|529076497|ref|YP_008375500.1| - 0.12 12.0 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 HTH domain Penicillinase_R PF03965.11 gi|529076497|ref|YP_008375500.1| - 0.12 12.4 0.0 0.21 11.7 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor Meth_synt_1 PF08267.7 gi|529076498|ref|YP_008375501.1| - 1.7e-25 89.9 0.0 1.1e-21 77.4 0.0 2.1 1 1 1 2 2 2 2 Cobalamin-independent synthase, N-terminal domain Meth_synt_2 PF01717.13 gi|529076498|ref|YP_008375501.1| - 2.1e-13 49.9 0.0 2.6e-13 49.6 0.0 1.1 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain NAD_binding_5 PF07994.7 gi|529076498|ref|YP_008375501.1| - 0.12 11.8 0.1 5.8 6.3 0.0 2.2 2 0 0 2 2 2 0 Myo-inositol-1-phosphate synthase Meth_synt_2 PF01717.13 gi|529076499|ref|YP_008375502.1| - 5.4e-82 275.3 0.0 6.3e-82 275.1 0.0 1.0 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.7 gi|529076499|ref|YP_008375502.1| - 3.5e-21 75.7 0.0 1.1e-20 74.1 0.0 1.7 1 1 0 2 2 2 1 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.12 gi|529076499|ref|YP_008375502.1| - 0.0041 16.0 0.0 0.0062 15.5 0.0 1.3 1 1 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) NUDIX PF00293.23 gi|529076500|ref|YP_008375503.1| - 9.2e-13 48.0 0.2 1.3e-12 47.5 0.1 1.2 1 0 0 1 1 1 1 NUDIX domain TFIIB PF00382.14 gi|529076501|ref|YP_008375504.1| - 3.6e-41 138.8 0.1 1.3e-19 69.7 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|529076501|ref|YP_008375504.1| - 7.6e-19 66.7 3.4 3e-18 64.8 2.7 1.8 2 0 0 2 2 2 1 TFIIB zinc-binding A2L_zn_ribbon PF08792.5 gi|529076501|ref|YP_008375504.1| - 0.0021 17.4 0.6 0.0047 16.3 0.4 1.6 1 0 0 1 1 1 1 A2L zinc ribbon domain RRN7 PF11781.3 gi|529076501|ref|YP_008375504.1| - 0.0027 17.1 2.2 0.0047 16.3 1.6 1.4 1 0 0 1 1 1 1 RNA polymerase I-specific transcription initiation factor Rrn7 Sigma70_r4 PF04545.11 gi|529076501|ref|YP_008375504.1| - 0.0035 16.6 1.8 0.033 13.4 0.0 3.1 3 0 0 3 3 3 1 Sigma-70, region 4 DZR PF12773.2 gi|529076501|ref|YP_008375504.1| - 0.011 15.5 1.1 0.02 14.6 0.7 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|529076501|ref|YP_008375504.1| - 0.012 14.7 0.8 0.023 13.9 0.6 1.5 1 0 0 1 1 1 0 zinc-ribbon domain GFA PF04828.9 gi|529076501|ref|YP_008375504.1| - 0.017 15.0 0.2 0.041 13.8 0.1 1.6 1 0 0 1 1 1 0 Glutathione-dependent formaldehyde-activating enzyme zf-TFIIB PF13453.1 gi|529076501|ref|YP_008375504.1| - 0.023 13.9 0.1 0.023 13.9 0.1 1.8 2 0 0 2 2 2 0 Transcription factor zinc-finger Rubredoxin PF00301.15 gi|529076501|ref|YP_008375504.1| - 0.032 14.1 0.6 10 6.0 0.0 2.4 2 0 0 2 2 2 0 Rubredoxin HTH_24 PF13412.1 gi|529076501|ref|YP_008375504.1| - 0.043 13.2 0.1 0.1 11.9 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Cyclin_C PF02984.14 gi|529076501|ref|YP_008375504.1| - 0.053 13.4 0.0 0.37 10.7 0.0 2.1 2 0 0 2 2 2 0 Cyclin, C-terminal domain DUF1272 PF06906.6 gi|529076501|ref|YP_008375504.1| - 0.075 12.8 0.7 0.14 11.9 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) zf-C4_Topoisom PF01396.14 gi|529076501|ref|YP_008375504.1| - 0.084 12.3 0.6 0.12 11.9 0.1 1.5 1 1 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger OrfB_Zn_ribbon PF07282.6 gi|529076501|ref|YP_008375504.1| - 0.11 12.1 1.0 0.24 11.0 0.7 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-RING_3 PF14369.1 gi|529076501|ref|YP_008375504.1| - 0.66 10.0 3.5 0.42 10.6 0.3 2.1 1 1 1 2 2 2 0 zinc-finger Zn-ribbon_8 PF09723.5 gi|529076501|ref|YP_008375504.1| - 0.77 9.7 4.9 2 8.4 0.5 2.4 1 1 1 2 2 2 0 Zinc ribbon domain zf-IS66 PF13005.2 gi|529076501|ref|YP_008375504.1| - 7 6.7 8.3 2.9 7.9 1.5 3.0 2 1 1 3 3 3 0 zinc-finger binding domain of transposase IS66 Glu-tRNAGln PF02686.10 gi|529076502|ref|YP_008375505.1| - 1.7e-18 66.1 0.7 3e-18 65.3 0.5 1.4 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit Amidase PF01425.16 gi|529076503|ref|YP_008375506.1| - 1.1e-133 446.3 0.7 1.4e-133 446.0 0.5 1.0 1 0 0 1 1 1 1 Amidase NPCBM_assoc PF10633.4 gi|529076504|ref|YP_008375507.1| - 0.04 13.9 2.0 0.46 10.5 0.0 3.1 3 0 0 3 3 3 0 NPCBM-associated, NEW3 domain of alpha-galactosidase Y_Y_Y PF07495.8 gi|529076504|ref|YP_008375507.1| - 0.059 13.1 0.0 0.15 11.8 0.0 1.7 1 1 0 1 1 1 0 Y_Y_Y domain Big_3_4 PF13754.1 gi|529076504|ref|YP_008375507.1| - 2 8.8 8.8 2.1 8.7 0.4 3.0 3 0 0 3 3 3 0 Bacterial Ig-like domain (group 3) Glycos_transf_1 PF00534.15 gi|529076505|ref|YP_008375508.1| - 2.4e-26 92.1 0.0 7.1e-25 87.4 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|529076505|ref|YP_008375508.1| - 2.6e-17 63.0 0.0 4.4e-17 62.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|529076505|ref|YP_008375508.1| - 1.7e-16 60.7 6.8 1.3e-15 57.9 2.0 2.2 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|529076505|ref|YP_008375508.1| - 5.5e-12 45.9 0.2 3.9e-11 43.2 0.0 2.3 2 1 1 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|529076505|ref|YP_008375508.1| - 0.0011 19.2 0.0 0.0024 18.0 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|529076505|ref|YP_008375508.1| - 0.039 13.7 0.0 0.081 12.7 0.0 1.7 2 0 0 2 2 2 0 Glycosyl transferase 4-like Rpr2 PF04032.11 gi|529076506|ref|YP_008375509.1| - 3.3e-15 55.7 0.0 3.9e-15 55.4 0.0 1.0 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain CRS1_YhbY PF01985.16 gi|529076507|ref|YP_008375510.1| - 1.9e-18 66.2 0.1 2.3e-18 65.9 0.1 1.0 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain MS_channel PF00924.13 gi|529076508|ref|YP_008375511.1| - 7.9e-56 188.6 0.2 9.6e-56 188.3 0.1 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel Acyl_transf_3 PF01757.17 gi|529076509|ref|YP_008375512.1| - 0.019 13.8 8.7 0.021 13.7 6.0 1.0 1 0 0 1 1 1 0 Acyltransferase family VKOR PF07884.9 gi|529076509|ref|YP_008375512.1| - 0.025 14.4 1.7 0.025 14.4 1.2 2.0 1 1 1 2 2 2 0 Vitamin K epoxide reductase family MatE PF01554.13 gi|529076509|ref|YP_008375512.1| - 0.039 13.5 8.1 0.073 12.6 5.4 1.6 1 1 0 1 1 1 0 MatE DUF1109 PF06532.6 gi|529076509|ref|YP_008375512.1| - 0.8 9.0 14.8 0.26 10.6 5.3 2.7 1 1 0 2 2 2 0 Protein of unknown function (DUF1109) DUF1772 PF08592.6 gi|529076509|ref|YP_008375512.1| - 1.3 8.7 12.0 0.15 11.7 3.8 2.3 1 1 2 3 3 3 0 Domain of unknown function (DUF1772) DUF883 PF05957.8 gi|529076509|ref|YP_008375512.1| - 3.9 7.9 6.2 0.25 11.7 0.5 1.8 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) Arteri_Gl PF00951.13 gi|529076509|ref|YP_008375512.1| - 9.9 5.7 9.8 0.91 9.0 1.2 2.0 1 1 1 2 2 2 0 Arterivirus GL envelope glycoprotein TMCO5 PF14992.1 gi|529076510|ref|YP_008375513.1| - 0.00021 20.5 1.3 0.00022 20.4 0.9 1.2 1 0 0 1 1 1 1 TMCO5 family Flu_NS2 PF00601.14 gi|529076510|ref|YP_008375513.1| - 0.0005 20.2 0.1 0.00061 19.9 0.1 1.2 1 0 0 1 1 1 1 Influenza non-structural protein (NS2) TPR_MLP1_2 PF07926.7 gi|529076510|ref|YP_008375513.1| - 0.00052 19.7 2.8 0.00077 19.2 1.9 1.2 1 0 0 1 1 1 1 TPR/MLP1/MLP2-like protein GOLGA2L5 PF15070.1 gi|529076510|ref|YP_008375513.1| - 0.001 17.6 1.0 0.0011 17.5 0.7 1.1 1 0 0 1 1 1 1 Putative golgin subfamily A member 2-like protein 5 DUF948 PF06103.6 gi|529076510|ref|YP_008375513.1| - 0.0011 18.7 0.4 0.0015 18.3 0.3 1.2 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF948) AAA_27 PF13514.1 gi|529076510|ref|YP_008375513.1| - 0.0013 16.5 1.9 0.0013 16.4 1.3 1.1 1 0 0 1 1 1 1 AAA domain Atg14 PF10186.4 gi|529076510|ref|YP_008375513.1| - 0.0013 17.7 0.2 0.0015 17.5 0.1 1.1 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 RmuC PF02646.11 gi|529076510|ref|YP_008375513.1| - 0.0025 16.7 0.6 0.003 16.4 0.4 1.1 1 0 0 1 1 1 1 RmuC family Reo_sigmaC PF04582.7 gi|529076510|ref|YP_008375513.1| - 0.0046 16.1 0.4 0.0046 16.1 0.2 1.1 1 0 0 1 1 1 1 Reovirus sigma C capsid protein ATG16 PF08614.6 gi|529076510|ref|YP_008375513.1| - 0.0049 16.7 1.0 0.0059 16.4 0.7 1.2 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) LPP PF04728.8 gi|529076510|ref|YP_008375513.1| - 0.0052 16.5 0.3 0.011 15.5 0.1 1.6 1 1 0 1 1 1 1 Lipoprotein leucine-zipper DivIVA PF05103.8 gi|529076510|ref|YP_008375513.1| - 0.0057 16.7 5.2 0.0068 16.4 3.6 1.1 1 0 0 1 1 1 1 DivIVA protein MAP65_ASE1 PF03999.7 gi|529076510|ref|YP_008375513.1| - 0.0065 15.1 0.1 0.007 15.0 0.1 1.0 1 0 0 1 1 1 1 Microtubule associated protein (MAP65/ASE1 family) Laminin_I PF06008.9 gi|529076510|ref|YP_008375513.1| - 0.0071 15.6 1.2 0.0082 15.4 0.8 1.1 1 0 0 1 1 1 1 Laminin Domain I Spc7 PF08317.6 gi|529076510|ref|YP_008375513.1| - 0.0075 14.9 1.4 0.0086 14.7 0.9 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein Rab5-bind PF09311.6 gi|529076510|ref|YP_008375513.1| - 0.0087 15.9 3.9 0.0098 15.7 2.7 1.1 1 0 0 1 1 1 1 Rabaptin-like protein IncA PF04156.9 gi|529076510|ref|YP_008375513.1| - 0.0092 15.5 3.0 0.013 15.1 2.1 1.1 1 0 0 1 1 1 1 IncA protein Ax_dynein_light PF10211.4 gi|529076510|ref|YP_008375513.1| - 0.011 15.5 1.0 0.014 15.2 0.7 1.1 1 0 0 1 1 1 0 Axonemal dynein light chain Filament PF00038.16 gi|529076510|ref|YP_008375513.1| - 0.011 15.1 1.2 0.013 14.9 0.9 1.1 1 0 0 1 1 1 0 Intermediate filament protein Med4 PF10018.4 gi|529076510|ref|YP_008375513.1| - 0.012 15.0 2.4 0.013 14.9 1.4 1.3 1 1 0 1 1 1 0 Vitamin-D-receptor interacting Mediator subunit 4 BLOC1_2 PF10046.4 gi|529076510|ref|YP_008375513.1| - 0.014 15.5 1.5 0.021 14.9 1.0 1.3 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 EzrA PF06160.7 gi|529076510|ref|YP_008375513.1| - 0.017 13.3 0.9 0.02 13.0 0.6 1.1 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA Med9 PF07544.8 gi|529076510|ref|YP_008375513.1| - 0.018 14.7 1.7 0.018 14.7 1.2 1.9 1 1 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 CENP-F_leu_zip PF10473.4 gi|529076510|ref|YP_008375513.1| - 0.018 14.9 3.0 0.021 14.7 2.1 1.2 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 RTBV_P46 PF06216.6 gi|529076510|ref|YP_008375513.1| - 0.023 13.5 0.1 0.027 13.3 0.1 1.0 1 0 0 1 1 1 0 Rice tungro bacilliform virus P46 protein TBPIP PF07106.8 gi|529076510|ref|YP_008375513.1| - 0.024 14.1 0.7 0.029 13.9 0.5 1.2 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Phage_GP20 PF06810.6 gi|529076510|ref|YP_008375513.1| - 0.024 14.0 1.7 0.034 13.5 1.2 1.3 1 0 0 1 1 1 0 Phage minor structural protein GP20 DASH_Spc34 PF08657.5 gi|529076510|ref|YP_008375513.1| - 0.025 14.2 1.6 0.033 13.8 1.1 1.3 1 0 0 1 1 1 0 DASH complex subunit Spc34 AAA_13 PF13166.1 gi|529076510|ref|YP_008375513.1| - 0.026 13.0 0.6 0.029 12.8 0.4 1.0 1 0 0 1 1 1 0 AAA domain DUF972 PF06156.8 gi|529076510|ref|YP_008375513.1| - 0.027 14.8 2.9 0.057 13.7 2.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF972) IFT57 PF10498.4 gi|529076510|ref|YP_008375513.1| - 0.028 13.1 0.3 0.027 13.2 0.2 1.2 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 NPV_P10 PF05531.7 gi|529076510|ref|YP_008375513.1| - 0.031 14.5 2.4 0.048 13.9 1.6 1.4 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein COG2 PF06148.6 gi|529076510|ref|YP_008375513.1| - 0.033 14.0 1.1 0.041 13.7 0.8 1.2 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 DegS PF05384.6 gi|529076510|ref|YP_008375513.1| - 0.034 13.3 1.6 0.039 13.1 1.1 1.1 1 0 0 1 1 1 0 Sensor protein DegS DUF745 PF05335.8 gi|529076510|ref|YP_008375513.1| - 0.034 13.6 2.0 0.043 13.3 1.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF745) TMF_TATA_bd PF12325.3 gi|529076510|ref|YP_008375513.1| - 0.045 13.4 4.0 0.065 12.9 2.8 1.2 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding Cortex-I_coil PF09304.5 gi|529076510|ref|YP_008375513.1| - 0.046 13.7 2.3 0.06 13.3 1.6 1.2 1 0 0 1 1 1 0 Cortexillin I, coiled coil Mnd1 PF03962.10 gi|529076510|ref|YP_008375513.1| - 0.046 13.3 0.7 0.061 12.9 0.5 1.3 1 0 0 1 1 1 0 Mnd1 family CENP-Q PF13094.1 gi|529076510|ref|YP_008375513.1| - 0.051 13.5 2.4 0.062 13.3 1.7 1.2 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit DUF3373 PF11853.3 gi|529076510|ref|YP_008375513.1| - 0.052 12.0 0.6 0.062 11.8 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3373) V_ATPase_I PF01496.14 gi|529076510|ref|YP_008375513.1| - 0.056 11.3 0.5 0.069 10.9 0.4 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family HrpB7 PF09486.5 gi|529076510|ref|YP_008375513.1| - 0.059 13.2 6.5 0.023 14.6 1.9 1.8 1 1 1 2 2 2 0 Bacterial type III secretion protein (HrpB7) Seryl_tRNA_N PF02403.17 gi|529076510|ref|YP_008375513.1| - 0.062 13.3 1.3 0.094 12.7 0.9 1.4 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain DUF1664 PF07889.7 gi|529076510|ref|YP_008375513.1| - 0.064 13.0 0.6 0.085 12.6 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Bacillus_HBL PF05791.6 gi|529076510|ref|YP_008375513.1| - 0.069 12.5 0.3 0.078 12.3 0.2 1.1 1 0 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) APG6 PF04111.7 gi|529076510|ref|YP_008375513.1| - 0.075 12.0 1.9 0.086 11.8 1.3 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 Sec8_exocyst PF04048.9 gi|529076510|ref|YP_008375513.1| - 0.077 12.6 0.2 0.1 12.2 0.1 1.1 1 0 0 1 1 1 0 Sec8 exocyst complex component specific domain DUF2730 PF10805.3 gi|529076510|ref|YP_008375513.1| - 0.078 12.7 0.4 0.11 12.2 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) FlaC_arch PF05377.6 gi|529076510|ref|YP_008375513.1| - 0.091 12.6 1.2 0.16 11.9 0.8 1.6 1 1 0 1 1 1 0 Flagella accessory protein C (FlaC) DUF2960 PF11173.3 gi|529076510|ref|YP_008375513.1| - 0.099 12.9 0.3 0.19 12.0 0.1 1.6 2 0 0 2 2 1 0 Protein of unknown function (DUF2960) Snapin_Pallidin PF14712.1 gi|529076510|ref|YP_008375513.1| - 0.1 12.9 1.4 0.15 12.3 1.0 1.3 1 0 0 1 1 1 0 Snapin/Pallidin DUF4618 PF15397.1 gi|529076510|ref|YP_008375513.1| - 0.11 11.8 1.6 0.19 11.0 1.1 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4618) PspA_IM30 PF04012.7 gi|529076510|ref|YP_008375513.1| - 0.15 11.4 6.4 0.2 10.9 4.2 1.4 1 1 1 2 2 2 0 PspA/IM30 family Prefoldin PF02996.12 gi|529076510|ref|YP_008375513.1| - 0.15 11.7 3.1 0.21 11.2 2.2 1.3 1 0 0 1 1 1 0 Prefoldin subunit Laminin_II PF06009.7 gi|529076510|ref|YP_008375513.1| - 0.17 11.6 2.2 0.35 10.6 1.6 1.5 1 1 0 1 1 1 0 Laminin Domain II DUF3347 PF11827.3 gi|529076510|ref|YP_008375513.1| - 0.19 11.6 1.2 0.25 11.3 0.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3347) CASP_C PF08172.7 gi|529076510|ref|YP_008375513.1| - 0.2 10.6 2.2 0.17 10.8 0.7 1.5 1 1 1 2 2 2 0 CASP C terminal Hemagglutinin PF00509.13 gi|529076510|ref|YP_008375513.1| - 0.2 9.7 1.0 0.24 9.5 0.7 1.0 1 0 0 1 1 1 0 Haemagglutinin TMF_DNA_bd PF12329.3 gi|529076510|ref|YP_008375513.1| - 0.29 10.9 6.1 0.51 10.1 4.3 1.4 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding DUF2802 PF10975.3 gi|529076510|ref|YP_008375513.1| - 0.33 10.7 3.5 0.52 10.0 1.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2802) Spc24 PF08286.6 gi|529076510|ref|YP_008375513.1| - 0.35 10.5 4.3 0.39 10.4 2.7 1.3 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 FlxA PF14282.1 gi|529076510|ref|YP_008375513.1| - 0.4 10.6 3.7 0.27 11.1 1.4 1.6 2 0 0 2 2 1 0 FlxA-like protein ADIP PF11559.3 gi|529076510|ref|YP_008375513.1| - 0.69 9.8 5.2 0.96 9.3 3.6 1.1 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding Lge1 PF11488.3 gi|529076510|ref|YP_008375513.1| - 0.71 10.1 4.2 3.4 7.9 2.3 2.3 1 1 2 3 3 3 0 Transcriptional regulatory protein LGE1 SlyX PF04102.7 gi|529076510|ref|YP_008375513.1| - 2.8 8.3 6.4 9.9 6.6 0.9 2.4 1 1 1 2 2 2 0 SlyX CoA_binding_2 PF13380.1 gi|529076511|ref|YP_008375514.1| - 1.3e-33 115.5 0.0 1.5e-33 115.3 0.0 1.0 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.14 gi|529076511|ref|YP_008375514.1| - 3.9e-05 24.0 0.0 5.2e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 CoA binding domain Coagulin PF02035.10 gi|529076513|ref|YP_008375516.1| - 0.081 12.5 0.0 0.081 12.5 0.0 1.0 1 0 0 1 1 1 0 Coagulin AAA_19 PF13245.1 gi|529076514|ref|YP_008375517.1| - 2.1e-07 30.5 0.0 1.5e-06 27.8 0.0 2.4 2 0 0 2 2 2 1 Part of AAA domain UvrD_C PF13361.1 gi|529076514|ref|YP_008375517.1| - 1e-05 25.2 0.0 1.5e-05 24.6 0.0 1.1 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain UvrD-helicase PF00580.16 gi|529076514|ref|YP_008375517.1| - 7.4e-05 22.1 0.0 0.053 12.8 0.0 2.2 2 0 0 2 2 2 2 UvrD/REP helicase N-terminal domain UvrD_C_2 PF13538.1 gi|529076514|ref|YP_008375517.1| - 0.00062 19.8 0.1 0.0014 18.7 0.0 1.6 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_25 PF13481.1 gi|529076514|ref|YP_008375517.1| - 0.00066 19.1 1.2 0.11 11.8 0.0 3.0 4 0 0 4 4 4 2 AAA domain Viral_helicase1 PF01443.13 gi|529076514|ref|YP_008375517.1| - 0.0029 17.1 0.1 0.27 10.7 0.0 3.0 3 0 0 3 3 3 1 Viral (Superfamily 1) RNA helicase AAA_33 PF13671.1 gi|529076514|ref|YP_008375517.1| - 0.062 13.1 0.0 0.84 9.5 0.0 2.7 3 0 0 3 3 3 0 AAA domain PhoH PF02562.11 gi|529076514|ref|YP_008375517.1| - 0.15 11.2 0.0 10 5.2 0.0 2.2 2 0 0 2 2 2 0 PhoH-like protein PSRP-3_Ycf65 PF04839.8 gi|529076515|ref|YP_008375518.1| - 0.014 15.3 0.0 0.054 13.5 0.0 2.0 1 0 0 1 1 1 0 Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65) Ta0938 PF11494.3 gi|529076515|ref|YP_008375518.1| - 0.021 14.9 0.4 0.059 13.4 0.2 1.7 1 1 1 2 2 2 0 Ta0938 HTH_AsnC-type PF13404.1 gi|529076516|ref|YP_008375519.1| - 0.025 14.1 0.0 0.047 13.2 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain DUF3116 PF11313.3 gi|529076516|ref|YP_008375519.1| - 0.029 13.9 0.0 0.13 11.8 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3116) HTH_20 PF12840.2 gi|529076516|ref|YP_008375519.1| - 0.031 14.0 0.1 0.076 12.8 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_43 PF09904.4 gi|529076516|ref|YP_008375519.1| - 0.054 13.3 0.0 0.18 11.6 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn helix DUF4439 PF14530.1 gi|529076516|ref|YP_008375519.1| - 0.12 12.8 1.1 0.37 11.2 0.1 2.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4439) IMS_HHH PF11798.3 gi|529076517|ref|YP_008375520.1| - 0.021 14.8 0.0 0.098 12.7 0.0 2.2 2 0 0 2 2 2 0 IMS family HHH motif TFIIB PF00382.14 gi|529076519|ref|YP_008375522.1| - 1.5e-27 95.1 0.3 2.3e-16 59.3 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|529076519|ref|YP_008375522.1| - 6.2e-07 28.6 0.3 1.5e-06 27.4 0.1 1.7 2 0 0 2 2 2 1 TFIIB zinc-binding IMS_HHH PF11798.3 gi|529076520|ref|YP_008375523.1| - 0.038 14.0 0.0 0.091 12.8 0.0 1.6 1 0 0 1 1 1 0 IMS family HHH motif MgtE_N PF03448.12 gi|529076520|ref|YP_008375523.1| - 0.61 10.4 3.5 0.98 9.7 0.8 2.5 2 1 0 2 2 2 0 MgtE intracellular N domain N6_Mtase PF02384.11 gi|529076522|ref|YP_008375525.1| - 5.6e-18 65.0 0.0 5.7e-17 61.7 0.0 2.2 1 1 0 1 1 1 1 N-6 DNA Methylase Methyltransf_26 PF13659.1 gi|529076522|ref|YP_008375525.1| - 4.3e-17 62.2 0.0 1.4e-16 60.5 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain TaqI_C PF12950.2 gi|529076522|ref|YP_008375525.1| - 1.5e-10 40.8 0.0 3.9e-10 39.5 0.0 1.7 1 0 0 1 1 1 1 TaqI-like C-terminal specificity domain UPF0020 PF01170.13 gi|529076522|ref|YP_008375525.1| - 7.1e-07 28.9 0.0 7.7e-05 22.3 0.0 2.5 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Eco57I PF07669.6 gi|529076522|ref|YP_008375525.1| - 1.1e-05 25.7 0.0 5.6e-05 23.4 0.0 2.2 1 0 0 1 1 1 1 Eco57I restriction-modification methylase MTS PF05175.9 gi|529076522|ref|YP_008375525.1| - 0.00061 19.2 0.0 0.0076 15.6 0.0 2.4 2 1 0 2 2 2 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|529076522|ref|YP_008375525.1| - 0.015 14.8 0.0 0.069 12.7 0.0 2.1 1 1 0 1 1 1 0 Methyltransferase domain BLOC1_2 PF10046.4 gi|529076522|ref|YP_008375525.1| - 0.041 14.0 0.5 1.9 8.7 0.0 3.3 3 0 0 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 PrmA PF06325.8 gi|529076522|ref|YP_008375525.1| - 0.067 12.3 0.0 4.6 6.2 0.0 2.5 2 0 0 2 2 2 0 Ribosomal protein L11 methyltransferase (PrmA) DUF4559 PF15112.1 gi|529076522|ref|YP_008375525.1| - 0.095 11.8 3.4 0.041 13.0 0.6 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4559) TBP PF00352.16 gi|529076523|ref|YP_008375526.1| - 1.5e-33 114.0 0.0 1.5e-22 78.7 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) UPF0086 PF01868.11 gi|529076524|ref|YP_008375527.1| - 0.13 11.9 0.1 2.9 7.5 0.1 2.0 1 1 1 2 2 2 0 Domain of unknown function UPF0086 cwf21 PF08312.7 gi|529076525|ref|YP_008375528.1| - 0.015 15.1 1.2 0.017 14.9 0.9 1.1 1 0 0 1 1 1 0 cwf21 domain SnoaL_2 PF12680.2 gi|529076526|ref|YP_008375529.1| - 0.02 15.3 0.1 0.033 14.5 0.1 1.4 1 1 0 1 1 1 0 SnoaL-like domain SnoaL PF07366.7 gi|529076526|ref|YP_008375529.1| - 0.095 12.2 0.1 0.16 11.5 0.0 1.5 1 1 0 1 1 1 0 SnoaL-like polyketide cyclase EFG_IV PF03764.13 gi|529076527|ref|YP_008375530.1| - 0.14 11.6 0.0 0.14 11.6 0.0 1.1 1 0 0 1 1 1 0 Elongation factor G, domain IV SpoA PF01052.15 gi|529076528|ref|YP_008375531.1| - 0.041 13.4 0.0 0.057 13.0 0.0 1.3 1 0 0 1 1 1 0 Surface presentation of antigens (SPOA) HTH_IclR PF09339.5 gi|529076529|ref|YP_008375532.1| - 0.00037 20.0 0.0 0.00073 19.0 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain Imm46 PF15585.1 gi|529076529|ref|YP_008375532.1| - 0.012 15.6 0.6 0.051 13.6 0.0 2.1 1 1 2 3 3 3 0 Immunity protein 46 HTH_38 PF13936.1 gi|529076529|ref|YP_008375532.1| - 0.012 15.0 0.2 0.037 13.5 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_28 PF13518.1 gi|529076529|ref|YP_008375532.1| - 0.033 14.1 0.0 0.11 12.4 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|529076529|ref|YP_008375532.1| - 0.047 13.3 0.0 0.17 11.5 0.0 1.9 2 0 0 2 2 2 0 MarR family HTH_24 PF13412.1 gi|529076529|ref|YP_008375532.1| - 0.12 11.7 0.0 0.32 10.4 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Rpr2 PF04032.11 gi|529076530|ref|YP_008375533.1| - 0.058 13.2 0.0 0.065 13.1 0.0 1.1 1 0 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain DUF3797 PF12677.2 gi|529076530|ref|YP_008375533.1| - 0.11 12.1 2.4 0.17 11.4 1.3 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF3797) Sigma70_r4_2 PF08281.7 gi|529076531|ref|YP_008375534.1| - 1.6e-05 24.2 0.1 3e-05 23.3 0.1 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.14 gi|529076531|ref|YP_008375534.1| - 0.0074 15.5 0.1 0.011 15.0 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.11 gi|529076531|ref|YP_008375534.1| - 0.038 13.2 0.1 0.062 12.6 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 IcmF-related PF06761.7 gi|529076531|ref|YP_008375534.1| - 0.068 12.4 0.3 0.29 10.3 0.0 1.9 1 1 1 2 2 2 0 Intracellular multiplication and human macrophage-killing HTH_Tnp_ISL3 PF13542.1 gi|529076536|ref|YP_008375539.1| - 0.046 12.9 0.0 0.081 12.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_28 PF13518.1 gi|529076537|ref|YP_008375540.1| - 0.0031 17.4 0.1 0.006 16.5 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|529076537|ref|YP_008375540.1| - 0.0081 15.7 0.1 0.013 15.1 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain NUMOD1 PF07453.8 gi|529076537|ref|YP_008375540.1| - 0.017 14.9 0.1 0.028 14.2 0.1 1.4 1 0 0 1 1 1 0 NUMOD1 domain HTH_41 PF14502.1 gi|529076537|ref|YP_008375540.1| - 0.096 12.3 0.0 0.38 10.4 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|529076537|ref|YP_008375540.1| - 0.1 11.8 0.1 0.17 11.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 MttA_Hcf106 PF02416.11 gi|529076540|ref|YP_008375543.1| - 1e-13 50.1 0.0 1.2e-13 49.9 0.0 1.1 1 0 0 1 1 1 1 mttA/Hcf106 family AAA_19 PF13245.1 gi|529076542|ref|YP_008375545.1| - 0.015 15.0 0.0 0.042 13.5 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain PepSY_2 PF13670.1 gi|529076543|ref|YP_008375546.1| - 2.9e-05 23.8 0.9 8.5e-05 22.3 0.6 1.8 1 0 0 1 1 1 1 Peptidase propeptide and YPEB domain Glug PF07581.7 gi|529076544|ref|YP_008375547.1| - 8.9e-07 28.7 74.5 0.073 13.3 4.9 11.6 12 0 0 12 12 12 7 The GLUG motif Ribosomal_L37ae PF01780.14 gi|529076546|ref|YP_008375549.1| - 0.013 15.3 0.3 0.014 15.2 0.2 1.1 1 0 0 1 1 1 0 Ribosomal L37ae protein family Phage_integrase PF00589.17 gi|529076548|ref|YP_008375551.1| - 1.1e-07 31.7 0.0 4.4e-07 29.7 0.0 1.9 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|529076548|ref|YP_008375551.1| - 0.072 13.2 0.1 14 5.9 0.0 2.8 1 1 1 2 2 2 0 Phage integrase, N-terminal SAM-like domain Strep_67kDa_ant PF06100.6 gi|529076549|ref|YP_008375552.1| - 1.4e-184 614.1 0.0 1.5e-184 614.0 0.0 1.0 1 0 0 1 1 1 1 Streptococcal 67 kDa myosin-cross-reactive antigen like family NAD_binding_8 PF13450.1 gi|529076549|ref|YP_008375552.1| - 3.5e-06 26.9 0.3 7.3e-06 25.9 0.2 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|529076549|ref|YP_008375552.1| - 0.00085 18.3 0.3 0.017 14.0 0.2 2.2 1 1 0 1 1 1 1 FAD dependent oxidoreductase HTH_10 PF04967.7 gi|529076550|ref|YP_008375553.1| - 7.8e-17 60.5 0.1 1e-16 60.2 0.1 1.2 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r3 PF04539.11 gi|529076550|ref|YP_008375553.1| - 0.00095 19.0 0.1 0.0012 18.7 0.1 1.2 1 0 0 1 1 1 1 Sigma-70 region 3 MarR_2 PF12802.2 gi|529076550|ref|YP_008375553.1| - 0.015 14.9 0.1 0.022 14.4 0.1 1.4 1 0 0 1 1 1 0 MarR family Sigma70_r4 PF04545.11 gi|529076550|ref|YP_008375553.1| - 0.032 13.5 0.1 0.052 12.8 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 HRDC PF00570.18 gi|529076550|ref|YP_008375553.1| - 0.081 12.6 0.0 0.1 12.2 0.0 1.2 1 0 0 1 1 1 0 HRDC domain DUF308 PF03729.8 gi|529076553|ref|YP_008375556.1| - 0.65 10.0 5.0 1.2 9.2 0.8 2.2 1 1 1 2 2 2 0 Short repeat of unknown function (DUF308) HxlR PF01638.12 gi|529076554|ref|YP_008375557.1| - 1.6e-19 69.3 0.0 1.6e-19 69.2 0.0 1.0 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.9 gi|529076554|ref|YP_008375557.1| - 9.8e-05 22.0 0.0 0.00013 21.6 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family MarR_2 PF12802.2 gi|529076554|ref|YP_008375557.1| - 0.001 18.6 0.0 0.0016 18.0 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.1 gi|529076554|ref|YP_008375557.1| - 0.0015 18.4 0.0 0.0019 18.1 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|529076554|ref|YP_008375557.1| - 0.0017 18.0 0.0 0.0022 17.6 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|529076554|ref|YP_008375557.1| - 0.0042 16.8 0.1 0.0057 16.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain KfrA_N PF11740.3 gi|529076554|ref|YP_008375557.1| - 0.038 14.4 0.1 0.046 14.1 0.1 1.2 1 0 0 1 1 1 0 Plasmid replication region DNA-binding N-term HTH_27 PF13463.1 gi|529076554|ref|YP_008375557.1| - 0.066 13.5 0.0 0.11 12.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain FUR PF01475.14 gi|529076554|ref|YP_008375557.1| - 0.089 12.7 0.0 0.096 12.6 0.0 1.1 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_45 PF14947.1 gi|529076554|ref|YP_008375557.1| - 0.11 12.2 0.0 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix Pyr_redox_2 PF07992.9 gi|529076555|ref|YP_008375558.1| - 1.9e-33 116.0 10.1 6.3e-33 114.3 5.2 3.4 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|529076555|ref|YP_008375558.1| - 7.6e-31 106.4 0.5 1.7e-30 105.3 0.3 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|529076555|ref|YP_008375558.1| - 2.2e-18 66.4 0.8 2.2e-18 66.4 0.6 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|529076555|ref|YP_008375558.1| - 1.2e-08 35.2 0.1 2.7e-06 27.6 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.1 gi|529076555|ref|YP_008375558.1| - 1.6e-05 23.9 0.0 0.003 16.5 0.0 2.3 1 1 1 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) FAD_oxidored PF12831.2 gi|529076555|ref|YP_008375558.1| - 0.00035 19.7 5.5 0.00049 19.2 1.8 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase 3HCDH_N PF02737.13 gi|529076555|ref|YP_008375558.1| - 0.0016 18.1 0.6 0.0016 18.1 0.4 1.7 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_2 PF00890.19 gi|529076555|ref|YP_008375558.1| - 0.0026 16.6 6.9 0.024 13.4 2.4 2.5 2 1 0 2 2 2 1 FAD binding domain GIDA PF01134.17 gi|529076555|ref|YP_008375558.1| - 0.026 13.3 8.5 0.012 14.5 2.9 2.7 3 1 0 3 3 3 0 Glucose inhibited division protein A DAO PF01266.19 gi|529076555|ref|YP_008375558.1| - 0.034 13.0 9.3 0.24 10.2 0.0 3.2 3 0 0 3 3 3 0 FAD dependent oxidoreductase CPSase_L_chain PF00289.17 gi|529076555|ref|YP_008375558.1| - 0.045 13.8 0.6 12 6.0 0.0 3.6 4 0 0 4 4 4 0 Carbamoyl-phosphate synthase L chain, N-terminal domain Thi4 PF01946.12 gi|529076555|ref|YP_008375558.1| - 0.046 12.8 1.3 0.74 8.8 0.1 2.6 3 0 0 3 3 3 0 Thi4 family NAD_binding_8 PF13450.1 gi|529076555|ref|YP_008375558.1| - 0.078 13.0 4.5 5.3 7.1 0.1 2.5 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Nucleoporin_N PF08801.6 gi|529076556|ref|YP_008375559.1| - 0.016 13.9 0.1 0.016 13.9 0.0 1.1 1 0 0 1 1 1 0 Nup133 N terminal like AP_endonuc_2 PF01261.19 gi|529076557|ref|YP_008375560.1| - 5.5e-31 107.5 1.6 7e-31 107.1 1.1 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Amidohydro_4 PF13147.1 gi|529076558|ref|YP_008375561.1| - 8.7e-18 65.3 9.6 3.2e-17 63.4 6.7 1.8 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|529076558|ref|YP_008375561.1| - 1.5e-10 40.7 1.2 3.3e-10 39.6 0.1 2.2 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|529076558|ref|YP_008375561.1| - 8.7e-08 31.7 8.4 1.2e-07 31.3 1.4 2.9 3 1 0 3 3 3 2 Amidohydrolase family Amidohydro_1 PF01979.15 gi|529076558|ref|YP_008375561.1| - 4.8e-05 23.1 2.5 0.00012 21.8 0.1 2.3 2 1 0 2 2 2 1 Amidohydrolase family ABC_tran PF00005.22 gi|529076559|ref|YP_008375562.1| - 1e-29 103.5 0.0 1.4e-29 103.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|529076559|ref|YP_008375562.1| - 2e-11 44.3 0.0 2e-05 24.7 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|529076559|ref|YP_008375562.1| - 7.5e-07 29.3 3.6 1.3e-05 25.2 2.5 2.1 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|529076559|ref|YP_008375562.1| - 8.5e-07 28.4 0.0 0.017 14.3 0.0 2.1 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|529076559|ref|YP_008375562.1| - 2.3e-05 24.5 0.3 0.00052 20.1 0.2 2.3 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|529076559|ref|YP_008375562.1| - 4e-05 22.8 0.0 6e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 SbcCD_C PF13558.1 gi|529076559|ref|YP_008375562.1| - 0.00012 21.9 0.6 0.001 18.9 0.4 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|529076559|ref|YP_008375562.1| - 0.00072 19.0 0.0 0.0014 18.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|529076559|ref|YP_008375562.1| - 0.00079 19.3 0.0 0.0022 17.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|529076559|ref|YP_008375562.1| - 0.0015 18.0 0.0 0.014 14.8 0.0 2.1 2 1 0 2 2 2 1 AAA-like domain AAA_15 PF13175.1 gi|529076559|ref|YP_008375562.1| - 0.0033 16.5 0.0 0.13 11.2 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|529076559|ref|YP_008375562.1| - 0.0048 17.2 0.0 0.008 16.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|529076559|ref|YP_008375562.1| - 0.0074 15.8 0.1 0.034 13.7 0.1 2.2 1 1 0 1 1 1 1 AAA domain Miro PF08477.8 gi|529076559|ref|YP_008375562.1| - 0.0082 16.6 0.0 0.016 15.6 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein AAA_25 PF13481.1 gi|529076559|ref|YP_008375562.1| - 0.0092 15.3 0.6 0.1 12.0 0.4 2.3 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|529076559|ref|YP_008375562.1| - 0.017 15.9 0.4 0.13 13.0 0.3 2.2 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|529076559|ref|YP_008375562.1| - 0.028 14.1 0.0 0.054 13.1 0.0 1.5 1 0 0 1 1 1 0 Archaeal ATPase MobB PF03205.9 gi|529076559|ref|YP_008375562.1| - 0.032 13.9 0.0 0.072 12.8 0.0 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.7 gi|529076559|ref|YP_008375562.1| - 0.037 13.6 0.0 0.079 12.6 0.0 1.5 1 0 0 1 1 1 0 NACHT domain MMR_HSR1 PF01926.18 gi|529076559|ref|YP_008375562.1| - 0.038 13.9 0.0 0.071 13.0 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase Gtr1_RagA PF04670.7 gi|529076559|ref|YP_008375562.1| - 0.042 12.9 0.0 0.069 12.2 0.0 1.2 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region Sigma54_activat PF00158.21 gi|529076559|ref|YP_008375562.1| - 0.044 13.2 0.0 0.19 11.2 0.0 1.9 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_33 PF13671.1 gi|529076559|ref|YP_008375562.1| - 0.052 13.4 0.5 0.29 11.0 0.3 2.3 1 1 0 1 1 1 0 AAA domain FAD_binding_4 PF01565.18 gi|529076559|ref|YP_008375562.1| - 0.052 13.0 0.2 0.085 12.3 0.1 1.4 1 0 0 1 1 1 0 FAD binding domain Dynamin_N PF00350.18 gi|529076559|ref|YP_008375562.1| - 0.057 13.2 0.3 0.13 12.0 0.1 1.7 2 0 0 2 2 2 0 Dynamin family NB-ARC PF00931.17 gi|529076559|ref|YP_008375562.1| - 0.067 12.0 0.0 0.15 10.8 0.0 1.5 2 0 0 2 2 2 0 NB-ARC domain DUF815 PF05673.8 gi|529076559|ref|YP_008375562.1| - 0.085 11.7 2.7 0.32 9.8 0.0 2.4 2 1 1 3 3 3 0 Protein of unknown function (DUF815) ATP-synt_ab PF00006.20 gi|529076559|ref|YP_008375562.1| - 0.11 11.9 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_19 PF13245.1 gi|529076559|ref|YP_008375562.1| - 0.12 12.1 0.7 0.43 10.3 0.0 2.3 3 0 0 3 3 3 0 Part of AAA domain ABC_tran PF00005.22 gi|529076560|ref|YP_008375563.1| - 7.5e-26 91.0 0.0 1e-25 90.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|529076560|ref|YP_008375563.1| - 3e-11 43.8 0.0 1.9e-07 31.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|529076560|ref|YP_008375563.1| - 1.7e-06 28.1 0.2 3.8e-05 23.8 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|529076560|ref|YP_008375563.1| - 3e-05 23.5 1.7 0.00074 18.9 1.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|529076560|ref|YP_008375563.1| - 4e-05 23.5 0.3 0.00051 19.9 0.2 2.3 1 1 0 1 1 1 1 AAA domain oligo_HPY PF08352.7 gi|529076560|ref|YP_008375563.1| - 8.6e-05 22.8 0.0 0.00029 21.1 0.0 1.9 2 0 0 2 2 2 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_10 PF12846.2 gi|529076560|ref|YP_008375563.1| - 0.0002 20.9 0.0 0.087 12.2 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain SbcCD_C PF13558.1 gi|529076560|ref|YP_008375563.1| - 0.002 17.9 0.0 0.015 15.1 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit IstB_IS21 PF01695.12 gi|529076560|ref|YP_008375563.1| - 0.0033 16.8 0.2 0.08 12.3 0.0 2.2 1 1 1 2 2 2 1 IstB-like ATP binding protein AAA_18 PF13238.1 gi|529076560|ref|YP_008375563.1| - 0.0033 17.7 0.1 0.023 15.0 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|529076560|ref|YP_008375563.1| - 0.0035 18.1 0.3 0.0071 17.1 0.2 1.8 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|529076560|ref|YP_008375563.1| - 0.0058 15.8 0.1 1.7 7.8 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|529076560|ref|YP_008375563.1| - 0.0062 16.5 0.4 0.011 15.7 0.3 1.6 1 1 0 1 1 1 1 AAA ATPase domain Propep_M14 PF02244.11 gi|529076560|ref|YP_008375563.1| - 0.015 14.9 0.1 0.025 14.2 0.1 1.4 1 0 0 1 1 1 0 Carboxypeptidase activation peptide AAA_29 PF13555.1 gi|529076560|ref|YP_008375563.1| - 0.017 14.6 0.0 0.038 13.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain MobB PF03205.9 gi|529076560|ref|YP_008375563.1| - 0.026 14.2 0.1 0.06 13.0 0.0 1.6 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B DUF258 PF03193.11 gi|529076560|ref|YP_008375563.1| - 0.031 13.4 0.0 0.049 12.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 NACHT PF05729.7 gi|529076560|ref|YP_008375563.1| - 0.033 13.8 0.0 0.057 13.0 0.0 1.3 1 0 0 1 1 1 0 NACHT domain MMR_HSR1 PF01926.18 gi|529076560|ref|YP_008375563.1| - 0.033 14.1 0.0 0.13 12.2 0.0 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase PRK PF00485.13 gi|529076560|ref|YP_008375563.1| - 0.069 12.7 0.0 0.16 11.4 0.0 1.6 2 0 0 2 2 1 0 Phosphoribulokinase / Uridine kinase family DUF87 PF01935.12 gi|529076560|ref|YP_008375563.1| - 0.11 12.3 0.1 0.55 10.0 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function DUF87 KAP_NTPase PF07693.9 gi|529076560|ref|YP_008375563.1| - 0.14 11.0 0.0 0.14 11.0 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain AAA_15 PF13175.1 gi|529076560|ref|YP_008375563.1| - 0.15 11.1 0.0 5.8 5.8 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain PhnJ PF06007.6 gi|529076561|ref|YP_008375564.1| - 8.2e-133 441.4 0.0 9.6e-133 441.1 0.0 1.0 1 0 0 1 1 1 1 Phosphonate metabolism protein PhnJ PhnI PF05861.7 gi|529076562|ref|YP_008375565.1| - 2.6e-135 450.5 0.0 3.1e-135 450.3 0.0 1.0 1 0 0 1 1 1 1 Bacterial phosphonate metabolism protein (PhnI) PhnG PF06754.7 gi|529076562|ref|YP_008375565.1| - 0.059 12.9 0.0 0.12 11.9 0.0 1.6 1 1 0 1 1 1 0 Phosphonate metabolism protein PhnG PhnH PF05845.7 gi|529076563|ref|YP_008375566.1| - 1.2e-31 109.6 0.3 1.5e-31 109.4 0.2 1.0 1 0 0 1 1 1 1 Bacterial phosphonate metabolism protein (PhnH) PhnG PF06754.7 gi|529076564|ref|YP_008375567.1| - 2.7e-16 59.5 0.1 3.1e-16 59.3 0.1 1.0 1 0 0 1 1 1 1 Phosphonate metabolism protein PhnG PhnI PF05861.7 gi|529076564|ref|YP_008375567.1| - 0.0056 15.2 0.0 0.0065 15.0 0.0 1.3 1 1 0 1 1 1 1 Bacterial phosphonate metabolism protein (PhnI) Phosphonate-bd PF12974.2 gi|529076565|ref|YP_008375568.1| - 2.6e-30 105.5 0.0 3.6e-30 105.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein ABC_tran PF00005.22 gi|529076566|ref|YP_008375569.1| - 6.6e-36 123.6 0.0 8.6e-36 123.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|529076566|ref|YP_008375569.1| - 1.1e-10 41.9 0.0 0.00021 21.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain DUF258 PF03193.11 gi|529076566|ref|YP_008375569.1| - 3.3e-06 26.3 0.0 7.1e-06 25.2 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|529076566|ref|YP_008375569.1| - 4.3e-05 22.9 0.0 0.00011 21.6 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|529076566|ref|YP_008375569.1| - 0.0001 22.3 0.4 0.00031 20.7 0.3 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.1 gi|529076566|ref|YP_008375569.1| - 0.00029 21.2 0.0 0.00037 20.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|529076566|ref|YP_008375569.1| - 0.00055 19.2 0.0 0.04 13.1 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|529076566|ref|YP_008375569.1| - 0.0023 17.4 0.0 0.085 12.2 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain AAA_22 PF13401.1 gi|529076566|ref|YP_008375569.1| - 0.0028 17.7 0.0 0.014 15.4 0.0 2.1 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|529076566|ref|YP_008375569.1| - 0.0083 15.2 0.0 0.013 14.6 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_30 PF13604.1 gi|529076566|ref|YP_008375569.1| - 0.011 15.3 0.1 0.036 13.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain RNA12 PF10443.4 gi|529076566|ref|YP_008375569.1| - 0.011 14.2 0.0 0.016 13.7 0.0 1.1 1 0 0 1 1 1 0 RNA12 protein AAA_18 PF13238.1 gi|529076566|ref|YP_008375569.1| - 0.013 15.7 0.0 0.17 12.2 0.0 2.2 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|529076566|ref|YP_008375569.1| - 0.015 15.1 0.0 0.026 14.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|529076566|ref|YP_008375569.1| - 0.016 15.1 0.2 0.04 13.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|529076566|ref|YP_008375569.1| - 0.031 13.4 0.0 0.053 12.6 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI MMR_HSR1 PF01926.18 gi|529076566|ref|YP_008375569.1| - 0.034 14.1 0.0 0.056 13.3 0.0 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase G-alpha PF00503.15 gi|529076566|ref|YP_008375569.1| - 0.035 12.8 0.0 0.035 12.8 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit SbcCD_C PF13558.1 gi|529076566|ref|YP_008375569.1| - 0.058 13.3 0.6 0.63 9.9 0.4 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_5 PF07728.9 gi|529076566|ref|YP_008375569.1| - 0.077 12.7 0.0 0.28 10.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Miro PF08477.8 gi|529076566|ref|YP_008375569.1| - 0.092 13.2 0.0 0.17 12.3 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein IstB_IS21 PF01695.12 gi|529076566|ref|YP_008375569.1| - 0.13 11.6 0.0 0.33 10.3 0.0 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein BPD_transp_1 PF00528.17 gi|529076567|ref|YP_008375570.1| - 6.9e-10 38.7 12.4 6.9e-10 38.7 8.6 1.8 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2583 PF10762.4 gi|529076567|ref|YP_008375570.1| - 0.33 11.1 4.8 4.5 7.4 0.2 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF2583) DUF202 PF02656.10 gi|529076567|ref|YP_008375570.1| - 3.8 7.7 11.1 0.97 9.6 2.4 3.1 2 1 0 2 2 2 0 Domain of unknown function (DUF202) PhoU PF01895.14 gi|529076568|ref|YP_008375571.1| - 4.9e-18 65.3 14.8 6.5e-16 58.5 2.6 2.8 3 0 0 3 3 3 2 PhoU domain Antitoxin-MazE PF04014.13 gi|529076568|ref|YP_008375571.1| - 3e-09 36.3 0.0 6.7e-09 35.2 0.0 1.6 1 0 0 1 1 1 1 Antidote-toxin recognition MazE PhoU_div PF01865.11 gi|529076568|ref|YP_008375571.1| - 0.0038 16.4 6.0 0.0088 15.2 4.1 1.5 1 1 0 1 1 1 1 Protein of unknown function DUF47 MCPsignal PF00015.16 gi|529076568|ref|YP_008375571.1| - 0.01 15.3 0.1 0.023 14.2 0.1 1.6 1 1 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Response_reg PF00072.19 gi|529076569|ref|YP_008375572.1| - 2e-11 43.8 0.0 4.5e-11 42.7 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.20 gi|529076569|ref|YP_008375572.1| - 3.1e-11 43.1 0.7 3.1e-11 43.1 0.5 3.2 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|529076569|ref|YP_008375572.1| - 3.1e-09 36.8 0.3 3.1e-09 36.8 0.2 2.7 3 0 0 3 3 3 1 PAS fold PAS PF00989.19 gi|529076569|ref|YP_008375572.1| - 7.5e-09 35.3 0.0 2e-08 34.0 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|529076569|ref|YP_008375572.1| - 3.9e-08 32.8 0.0 1.5e-07 31.0 0.0 2.0 1 0 0 1 1 1 1 PAS domain GAF_3 PF13492.1 gi|529076569|ref|YP_008375572.1| - 1.4e-07 31.6 0.0 3e-07 30.5 0.0 1.6 1 0 0 1 1 1 1 GAF domain PAS_9 PF13426.1 gi|529076569|ref|YP_008375572.1| - 1.5e-07 31.7 0.4 5.3e-07 29.9 0.1 2.1 2 0 0 2 2 2 1 PAS domain GAF_2 PF13185.1 gi|529076569|ref|YP_008375572.1| - 0.0012 19.3 0.1 0.0032 17.9 0.1 1.8 1 0 0 1 1 1 1 GAF domain OKR_DC_1_N PF03709.10 gi|529076569|ref|YP_008375572.1| - 0.031 14.3 0.0 0.08 13.0 0.0 1.8 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain HATPase_c PF02518.21 gi|529076569|ref|YP_008375572.1| - 0.1 12.3 0.0 0.22 11.2 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDE_Tnp_1 PF01609.16 gi|529076570|ref|YP_008375573.1| - 3.7e-24 85.4 0.1 4.8e-24 85.0 0.1 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|529076570|ref|YP_008375573.1| - 0.0085 15.1 0.0 0.012 14.6 0.0 1.1 1 0 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_2 PF13586.1 gi|529076570|ref|YP_008375573.1| - 0.033 14.3 0.0 0.065 13.4 0.0 1.5 1 0 0 1 1 1 0 Transposase DDE domain HATPase_c PF02518.21 gi|529076571|ref|YP_008375574.1| - 1.4e-14 53.7 0.2 1.7e-14 53.4 0.1 1.0 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|529076571|ref|YP_008375574.1| - 0.0008 19.1 0.0 0.00092 18.9 0.0 1.1 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|529076571|ref|YP_008375574.1| - 0.0071 16.0 0.0 0.011 15.3 0.0 1.3 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|529076571|ref|YP_008375574.1| - 0.048 13.3 0.0 0.053 13.2 0.0 1.1 1 0 0 1 1 1 0 GHKL domain PAS_9 PF13426.1 gi|529076572|ref|YP_008375575.1| - 2e-48 163.0 0.5 6.4e-21 74.6 0.0 4.0 4 0 0 4 4 4 3 PAS domain PAS PF00989.19 gi|529076572|ref|YP_008375575.1| - 3.1e-38 130.0 0.0 2.6e-17 62.6 0.0 3.6 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.5 gi|529076572|ref|YP_008375575.1| - 6.5e-29 100.1 1.5 2.5e-12 46.7 0.0 3.9 4 0 0 4 4 4 3 PAS fold PAS_8 PF13188.1 gi|529076572|ref|YP_008375575.1| - 1.4e-25 88.2 0.1 2.3e-10 39.9 0.0 4.0 3 0 0 3 3 3 3 PAS domain PAS_3 PF08447.6 gi|529076572|ref|YP_008375575.1| - 3.1e-16 59.2 0.1 5.5e-07 29.6 0.0 2.9 3 0 0 3 3 3 2 PAS fold HATPase_c PF02518.21 gi|529076572|ref|YP_008375575.1| - 7.8e-15 54.5 0.0 1.8e-14 53.4 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.19 gi|529076572|ref|YP_008375575.1| - 1.3e-12 47.7 0.0 4.4e-12 45.9 0.0 2.0 1 0 0 1 1 1 1 Response regulator receiver domain PAS_7 PF12860.2 gi|529076572|ref|YP_008375575.1| - 9.8e-07 28.7 0.0 0.0062 16.5 0.0 3.7 2 2 0 2 2 2 2 PAS fold HATPase_c_2 PF13581.1 gi|529076572|ref|YP_008375575.1| - 3.5e-06 26.8 0.1 9e-06 25.4 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|529076572|ref|YP_008375575.1| - 4.9e-05 23.0 0.0 0.00011 21.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.1 gi|529076572|ref|YP_008375575.1| - 0.00053 20.2 0.0 0.11 12.8 0.0 3.1 3 0 0 3 3 3 1 PAS domain MEKHLA PF08670.6 gi|529076572|ref|YP_008375575.1| - 0.027 14.0 0.1 0.25 10.8 0.0 2.3 1 1 0 2 2 2 0 MEKHLA domain HisKA PF00512.20 gi|529076572|ref|YP_008375575.1| - 0.034 14.1 2.7 0.25 11.3 0.1 3.2 3 0 0 3 3 3 0 His Kinase A (phospho-acceptor) domain SPOB_a PF14689.1 gi|529076572|ref|YP_008375575.1| - 0.043 13.3 0.0 0.17 11.5 0.0 2.0 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_5 PF14501.1 gi|529076572|ref|YP_008375575.1| - 0.071 12.8 0.0 0.23 11.2 0.0 1.8 2 0 0 2 2 1 0 GHKL domain DUF2874 PF11396.3 gi|529076572|ref|YP_008375575.1| - 0.14 12.1 0.0 0.37 10.7 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2874) MFS_1 PF07690.11 gi|529076574|ref|YP_008375577.1| - 0.081 11.6 6.4 0.09 11.4 4.5 1.1 1 0 0 1 1 1 0 Major Facilitator Superfamily 5TM-5TMR_LYT PF07694.7 gi|529076574|ref|YP_008375577.1| - 0.12 11.7 2.6 0.16 11.2 1.8 1.1 1 0 0 1 1 1 0 5TMR of 5TMR-LYT zf-H2C2_2 PF13465.1 gi|529076576|ref|YP_008375579.1| - 0.047 13.9 0.9 0.07 13.4 0.1 1.6 1 1 1 2 2 2 0 Zinc-finger double domain Zn-ribbon_8 PF09723.5 gi|529076576|ref|YP_008375579.1| - 0.11 12.4 0.1 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 Zinc ribbon domain zf-CSL PF05207.8 gi|529076576|ref|YP_008375579.1| - 0.12 11.8 0.2 0.14 11.6 0.2 1.1 1 0 0 1 1 1 0 CSL zinc finger TauE PF01925.14 gi|529076577|ref|YP_008375580.1| - 1.9e-21 76.6 37.3 2.2e-21 76.4 25.8 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE MCPsignal PF00015.16 gi|529076578|ref|YP_008375581.1| - 9.4e-40 136.4 28.5 9.4e-40 136.4 19.7 1.9 1 1 1 2 2 2 1 Methyl-accepting chemotaxis protein (MCP) signalling domain Sec8_exocyst PF04048.9 gi|529076578|ref|YP_008375581.1| - 0.00021 20.9 6.8 0.12 11.9 0.8 2.5 2 1 0 2 2 2 2 Sec8 exocyst complex component specific domain CK2S PF15011.1 gi|529076578|ref|YP_008375581.1| - 0.012 15.3 4.6 0.047 13.4 1.7 2.6 1 1 3 4 4 4 0 Casein Kinase 2 substrate AAA_13 PF13166.1 gi|529076578|ref|YP_008375581.1| - 0.013 14.0 8.7 0.017 13.6 6.0 1.1 1 0 0 1 1 1 0 AAA domain Laminin_II PF06009.7 gi|529076578|ref|YP_008375581.1| - 0.014 15.1 19.5 0.5 10.1 0.5 3.4 2 2 1 3 3 3 0 Laminin Domain II Tup_N PF08581.5 gi|529076578|ref|YP_008375581.1| - 0.051 13.7 0.7 6.1 7.1 0.0 2.4 2 0 0 2 2 2 0 Tup N-terminal BLOC1_2 PF10046.4 gi|529076578|ref|YP_008375581.1| - 0.054 13.6 13.8 0.57 10.3 1.5 3.5 1 1 2 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 ING PF12998.2 gi|529076578|ref|YP_008375581.1| - 0.068 13.4 9.2 0.092 13.0 0.9 3.2 2 2 0 2 2 2 0 Inhibitor of growth proteins N-terminal histone-binding Phasin_2 PF09361.5 gi|529076578|ref|YP_008375581.1| - 0.074 13.0 16.5 0.16 11.9 0.2 3.5 2 1 1 3 3 3 0 Phasin protein Syntaxin-6_N PF09177.6 gi|529076578|ref|YP_008375581.1| - 0.076 13.4 12.4 0.67 10.3 1.2 2.7 2 1 0 2 2 2 0 Syntaxin 6, N-terminal DUF2779 PF11074.3 gi|529076578|ref|YP_008375581.1| - 0.11 12.5 0.3 16 5.5 0.0 2.5 1 1 1 2 2 2 0 Domain of unknown function(DUF2779) DUF837 PF05769.6 gi|529076578|ref|YP_008375581.1| - 0.16 11.5 4.2 0.23 10.9 0.1 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF837) IncA PF04156.9 gi|529076578|ref|YP_008375581.1| - 0.17 11.4 11.9 3.2 7.3 0.2 2.5 2 1 0 2 2 2 0 IncA protein Cep57_CLD PF14073.1 gi|529076578|ref|YP_008375581.1| - 0.21 11.4 6.7 0.18 11.6 3.6 1.5 1 1 0 1 1 1 0 Centrosome localisation domain of Cep57 APG6 PF04111.7 gi|529076578|ref|YP_008375581.1| - 0.22 10.5 7.7 2.3 7.1 0.2 2.1 2 0 0 2 2 2 0 Autophagy protein Apg6 DUF948 PF06103.6 gi|529076578|ref|YP_008375581.1| - 0.25 11.2 10.1 0.39 10.6 1.2 3.5 1 1 3 4 4 4 0 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.7 gi|529076578|ref|YP_008375581.1| - 0.36 10.6 9.3 1.8 8.3 1.6 2.9 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) Fib_alpha PF08702.5 gi|529076578|ref|YP_008375581.1| - 0.68 10.0 5.9 8.8 6.4 0.3 2.6 2 1 0 2 2 2 0 Fibrinogen alpha/beta chain family Tropomyosin PF00261.15 gi|529076578|ref|YP_008375581.1| - 0.75 8.8 17.7 0.83 8.6 2.7 2.1 2 0 0 2 2 2 0 Tropomyosin TPR_MLP1_2 PF07926.7 gi|529076578|ref|YP_008375581.1| - 0.92 9.2 15.4 6.6 6.4 1.2 2.9 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein FlaC_arch PF05377.6 gi|529076578|ref|YP_008375581.1| - 1.2 9.0 5.0 7.7 6.4 0.1 3.8 3 1 0 4 4 4 0 Flagella accessory protein C (FlaC) DegS PF05384.6 gi|529076578|ref|YP_008375581.1| - 1.4 8.0 11.2 0.72 9.0 0.5 3.2 2 2 1 3 3 3 0 Sensor protein DegS Barstar PF01337.13 gi|529076578|ref|YP_008375581.1| - 1.5 8.6 4.1 3.1 7.6 0.0 3.2 2 1 1 3 3 3 0 Barstar (barnase inhibitor) DUF4592 PF15262.1 gi|529076578|ref|YP_008375581.1| - 2.1 8.9 7.4 8.5 6.9 0.2 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4592) AATF-Che1 PF13339.1 gi|529076578|ref|YP_008375581.1| - 2.1 8.4 8.7 2.8e+02 1.6 5.7 2.8 1 1 0 1 1 1 0 Apoptosis antagonizing transcription factor Rsd_AlgQ PF04353.8 gi|529076578|ref|YP_008375581.1| - 2.4 7.8 7.4 7.4 6.2 0.3 2.6 2 1 0 2 2 2 0 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ T4SS PF07996.6 gi|529076578|ref|YP_008375581.1| - 2.8 7.7 14.5 1.5 8.6 4.5 2.5 2 1 0 2 2 2 0 Type IV secretion system proteins Mnd1 PF03962.10 gi|529076578|ref|YP_008375581.1| - 2.9 7.5 12.0 0.55 9.8 2.4 2.5 1 1 2 3 3 3 0 Mnd1 family TMP_2 PF06791.8 gi|529076578|ref|YP_008375581.1| - 3.7 7.1 18.9 1.5 8.4 4.7 2.7 1 1 1 2 2 2 0 Prophage tail length tape measure protein V_ATPase_I PF01496.14 gi|529076578|ref|YP_008375581.1| - 4.8 4.9 5.6 17 3.0 3.9 1.8 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family zf-C4H2 PF10146.4 gi|529076578|ref|YP_008375581.1| - 6.7 6.6 7.1 1.4 8.9 0.7 2.1 1 1 1 2 2 2 0 Zinc finger-containing protein DUF2580 PF10824.3 gi|529076578|ref|YP_008375581.1| - 6.9 7.0 28.1 3 8.2 3.2 3.6 1 1 2 3 3 3 0 Protein of unknown function (DUF2580) DUF2203 PF09969.4 gi|529076578|ref|YP_008375581.1| - 7.2 6.8 10.0 13 6.0 1.8 2.8 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) DUF2533 PF10752.4 gi|529076578|ref|YP_008375581.1| - 7.9 6.8 6.8 8.2 6.8 1.1 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF2533) zf-C2H2 PF00096.21 gi|529076579|ref|YP_008375582.1| - 0.011 16.0 0.2 0.014 15.6 0.1 1.3 1 0 0 1 1 1 0 Zinc finger, C2H2 type zf-C2H2_4 PF13894.1 gi|529076579|ref|YP_008375582.1| - 0.03 14.6 0.2 0.04 14.2 0.2 1.3 1 0 0 1 1 1 0 C2H2-type zinc finger HTH_IclR PF09339.5 gi|529076580|ref|YP_008375583.1| - 3.6e-05 23.2 0.0 0.0001 21.7 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|529076580|ref|YP_008375583.1| - 6.7e-05 22.5 0.0 0.00015 21.3 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|529076580|ref|YP_008375583.1| - 7.3e-05 22.3 0.0 0.00014 21.4 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|529076580|ref|YP_008375583.1| - 0.00016 21.2 0.0 0.00028 20.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|529076580|ref|YP_008375583.1| - 0.00036 20.2 0.0 0.0007 19.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|529076580|ref|YP_008375583.1| - 0.00093 19.4 0.0 0.002 18.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|529076580|ref|YP_008375583.1| - 0.0023 17.2 0.0 0.005 16.1 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Desulfoferrod_N PF06397.7 gi|529076580|ref|YP_008375583.1| - 0.003 16.9 0.7 0.0051 16.1 0.5 1.4 1 0 0 1 1 1 1 Desulfoferrodoxin, N-terminal domain HTH_DeoR PF08220.7 gi|529076580|ref|YP_008375583.1| - 0.026 14.0 0.0 0.046 13.2 0.0 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_36 PF13730.1 gi|529076580|ref|YP_008375583.1| - 0.03 14.4 0.0 0.053 13.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF742 PF05331.6 gi|529076580|ref|YP_008375583.1| - 0.08 12.5 0.0 0.17 11.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF742) FeoC PF09012.5 gi|529076580|ref|YP_008375583.1| - 0.1 12.2 0.1 0.25 11.0 0.0 1.7 2 0 0 2 2 2 0 FeoC like transcriptional regulator TFIIE_alpha PF02002.12 gi|529076580|ref|YP_008375583.1| - 0.11 12.0 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_38 PF13936.1 gi|529076580|ref|YP_008375583.1| - 0.11 12.0 0.0 0.2 11.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_40 PF14493.1 gi|529076580|ref|YP_008375583.1| - 0.14 12.3 0.0 0.32 11.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Med10 PF09748.4 gi|529076581|ref|YP_008375584.1| - 0.061 13.1 0.0 0.075 12.8 0.0 1.2 1 0 0 1 1 1 0 Transcription factor subunit Med10 of Mediator complex HTH_20 PF12840.2 gi|529076581|ref|YP_008375584.1| - 0.072 12.9 0.0 0.09 12.5 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain IGR PF09597.5 gi|529076583|ref|YP_008375586.1| - 0.34 10.8 16.4 56 3.7 0.3 5.7 1 1 1 2 2 2 0 IGR protein motif Sporozoite_P67 PF05642.6 gi|529076584|ref|YP_008375587.1| - 0.058 11.2 1.2 0.06 11.1 0.8 1.0 1 0 0 1 1 1 0 Sporozoite P67 surface antigen Nucleoplasmin PF03066.10 gi|529076584|ref|YP_008375587.1| - 2.4 7.6 8.3 2.9 7.3 5.7 1.1 1 0 0 1 1 1 0 Nucleoplasmin Myc_N PF01056.13 gi|529076584|ref|YP_008375587.1| - 3.6 6.6 6.5 4.2 6.4 4.5 1.1 1 0 0 1 1 1 0 Myc amino-terminal region ApbE PF02424.10 gi|529076585|ref|YP_008375588.1| - 2.9e-31 108.6 0.2 3.7e-31 108.3 0.1 1.1 1 0 0 1 1 1 1 ApbE family TSP_3 PF02412.13 gi|529076586|ref|YP_008375589.1| - 2.5e-05 23.6 2.9 9.7e-05 21.7 0.4 2.1 2 0 0 2 2 2 2 Thrombospondin type 3 repeat Ferric_reduct PF01794.14 gi|529076587|ref|YP_008375590.1| - 1 9.4 11.3 0.22 11.6 4.6 2.1 1 1 1 2 2 2 0 Ferric reductase like transmembrane component PepSY_TM_2 PF13703.1 gi|529076587|ref|YP_008375590.1| - 3.4 7.8 15.6 0.44 10.7 3.4 3.5 1 1 1 3 3 3 0 PepSY-associated TM helix HTH_20 PF12840.2 gi|529076588|ref|YP_008375591.1| - 4.2e-20 71.2 1.4 5.8e-11 42.0 0.4 2.2 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.15 gi|529076588|ref|YP_008375591.1| - 2e-15 56.1 0.0 2.2e-09 36.8 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|529076588|ref|YP_008375591.1| - 1.4e-12 46.7 0.1 1.8e-06 27.2 0.0 2.2 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|529076588|ref|YP_008375591.1| - 2.8e-10 39.7 0.0 3e-06 26.8 0.0 2.2 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|529076588|ref|YP_008375591.1| - 2.4e-08 33.5 0.7 0.0003 20.3 0.2 2.4 2 0 0 2 2 2 2 MarR family HTH_27 PF13463.1 gi|529076588|ref|YP_008375591.1| - 2.6e-08 34.0 1.0 1.9e-05 24.9 0.3 2.5 3 0 0 3 3 2 2 Winged helix DNA-binding domain Penicillinase_R PF03965.11 gi|529076588|ref|YP_008375591.1| - 2.9e-08 33.8 0.1 0.0012 18.9 0.1 2.3 1 1 1 2 2 2 2 Penicillinase repressor RP-C PF03428.8 gi|529076588|ref|YP_008375591.1| - 6.9e-06 25.6 0.3 0.03 13.7 0.0 2.4 1 1 1 2 2 2 2 Replication protein C N-terminal domain MarR PF01047.17 gi|529076588|ref|YP_008375591.1| - 8.2e-06 25.4 0.4 0.0037 16.9 0.0 2.7 3 1 1 4 4 4 1 MarR family DUF2513 PF10711.4 gi|529076588|ref|YP_008375591.1| - 0.00015 21.8 0.1 0.35 10.9 0.0 2.2 2 0 0 2 2 2 2 Hypothetical protein (DUF2513) HTH_34 PF13601.1 gi|529076588|ref|YP_008375591.1| - 0.00022 21.1 0.0 0.14 12.2 0.0 2.2 2 0 0 2 2 2 2 Winged helix DNA-binding domain HTH_AsnC-type PF13404.1 gi|529076588|ref|YP_008375591.1| - 0.0011 18.5 0.1 0.0034 16.8 0.0 1.9 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain Fe_dep_repress PF01325.14 gi|529076588|ref|YP_008375591.1| - 0.0043 16.9 0.0 0.013 15.4 0.0 1.8 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_10 PF04967.7 gi|529076588|ref|YP_008375591.1| - 0.016 14.7 0.5 10 5.8 0.0 3.2 2 2 0 2 2 2 0 HTH DNA binding domain HTH_DeoR PF08220.7 gi|529076588|ref|YP_008375591.1| - 0.024 14.1 0.0 0.34 10.4 0.0 2.4 2 1 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_11 PF08279.7 gi|529076588|ref|YP_008375591.1| - 0.029 14.0 0.5 1.4 8.6 0.1 2.3 2 0 0 2 2 2 0 HTH domain Mrr_N PF14338.1 gi|529076588|ref|YP_008375591.1| - 0.032 14.3 0.0 0.22 11.6 0.0 2.1 2 0 0 2 2 2 0 Mrr N-terminal domain DUF387 PF04079.11 gi|529076588|ref|YP_008375591.1| - 0.041 13.2 0.0 0.59 9.4 0.0 2.2 1 1 1 2 2 2 0 Putative transcriptional regulators (Ypuh-like) HTH_38 PF13936.1 gi|529076588|ref|YP_008375591.1| - 0.048 13.2 0.2 0.25 10.9 0.0 2.3 2 1 1 3 3 3 0 Helix-turn-helix domain HTH_IclR PF09339.5 gi|529076588|ref|YP_008375591.1| - 0.12 11.9 0.6 2 8.0 0.2 2.3 2 0 0 2 2 2 0 IclR helix-turn-helix domain DUF981 PF06168.6 gi|529076589|ref|YP_008375592.1| - 0.022 14.5 6.3 0.039 13.7 4.4 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF981) DUF1772 PF08592.6 gi|529076589|ref|YP_008375592.1| - 0.05 13.3 1.7 0.05 13.3 0.3 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF1772) HlyIII PF03006.15 gi|529076589|ref|YP_008375592.1| - 0.085 12.2 2.6 0.099 12.0 1.8 1.0 1 0 0 1 1 1 0 Haemolysin-III related 7TMR-DISM_7TM PF07695.6 gi|529076589|ref|YP_008375592.1| - 0.33 10.5 7.4 0.41 10.2 5.1 1.1 1 0 0 1 1 1 0 7TM diverse intracellular signalling UbiA PF01040.13 gi|529076589|ref|YP_008375592.1| - 0.58 9.3 6.4 0.67 9.1 4.4 1.1 1 0 0 1 1 1 0 UbiA prenyltransferase family DUF998 PF06197.8 gi|529076589|ref|YP_008375592.1| - 0.59 9.4 11.0 22 4.2 0.9 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF998) DUF805 PF05656.9 gi|529076589|ref|YP_008375592.1| - 1.7 8.5 4.7 3.8 7.3 3.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF805) DUF3953 PF13129.1 gi|529076589|ref|YP_008375592.1| - 2.2 7.9 6.1 2.4 7.8 0.6 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3953) DUF4131 PF13567.1 gi|529076589|ref|YP_008375592.1| - 2.6 7.3 9.1 0.17 11.2 2.1 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) CMD PF02627.15 gi|529076591|ref|YP_008375594.1| - 4.7e-10 39.1 0.2 1.5e-08 34.3 0.0 2.2 1 1 1 2 2 2 2 Carboxymuconolactone decarboxylase family TauE PF01925.14 gi|529076592|ref|YP_008375595.1| - 3.9e-35 121.4 21.0 3.9e-35 121.4 14.5 1.3 1 1 0 1 1 1 1 Sulfite exporter TauE/SafE adh_short PF00106.20 gi|529076593|ref|YP_008375596.1| - 1.5e-20 73.7 1.8 2.1e-20 73.2 1.3 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|529076593|ref|YP_008375596.1| - 2.1e-07 30.9 0.0 2.9e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|529076593|ref|YP_008375596.1| - 5.2e-06 26.2 0.6 1.1e-05 25.2 0.4 1.5 1 0 0 1 1 1 1 KR domain Eno-Rase_NADH_b PF12242.3 gi|529076593|ref|YP_008375596.1| - 0.0002 21.0 0.3 0.00048 19.8 0.2 1.6 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Epimerase PF01370.16 gi|529076593|ref|YP_008375596.1| - 0.00024 20.6 0.1 0.00032 20.2 0.1 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family HHH_5 PF14520.1 gi|529076593|ref|YP_008375596.1| - 0.072 13.2 0.0 0.14 12.3 0.0 1.7 1 1 0 1 1 1 0 Helix-hairpin-helix domain 3HCDH_N PF02737.13 gi|529076593|ref|YP_008375596.1| - 0.76 9.3 3.8 14 5.2 2.6 2.2 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Patatin PF01734.17 gi|529076594|ref|YP_008375597.1| - 5.4e-15 55.8 1.1 1.3e-07 31.7 0.1 2.1 2 0 0 2 2 2 2 Patatin-like phospholipase Hexapep PF00132.19 gi|529076595|ref|YP_008375598.1| - 1.6e-12 46.3 11.4 2.7e-08 32.9 2.3 3.3 2 1 1 3 3 3 2 Bacterial transferase hexapeptide (six repeats) SATase_N PF06426.9 gi|529076595|ref|YP_008375598.1| - 1.2e-06 28.7 0.0 2.1e-06 27.9 0.0 1.4 1 0 0 1 1 1 1 Serine acetyltransferase, N-terminal Hexapep_2 PF14602.1 gi|529076595|ref|YP_008375598.1| - 8.3e-06 25.2 5.3 0.00014 21.2 1.1 2.6 2 1 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase Pyr_redox_2 PF07992.9 gi|529076596|ref|YP_008375599.1| - 6.8e-23 81.6 0.1 1.2e-22 80.8 0.1 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|529076596|ref|YP_008375599.1| - 1.7e-08 33.7 3.6 0.0027 16.6 1.7 2.4 2 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|529076596|ref|YP_008375599.1| - 1.6e-07 31.5 0.1 6.6e-05 23.0 0.0 2.3 1 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|529076596|ref|YP_008375599.1| - 2.9e-06 26.3 5.3 0.00015 20.7 0.9 2.8 2 1 1 3 3 3 2 FAD binding domain HI0933_like PF03486.9 gi|529076596|ref|YP_008375599.1| - 3.2e-06 25.8 0.1 0.011 14.2 0.6 2.1 2 0 0 2 2 2 2 HI0933-like protein GIDA PF01134.17 gi|529076596|ref|YP_008375599.1| - 2.2e-05 23.4 0.3 0.0001 21.2 0.3 1.8 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|529076596|ref|YP_008375599.1| - 8.7e-05 22.8 1.0 0.53 10.7 0.0 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|529076596|ref|YP_008375599.1| - 0.00019 20.6 2.3 0.00033 19.8 1.6 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|529076596|ref|YP_008375599.1| - 0.001 18.2 0.1 0.0016 17.5 0.1 1.4 1 0 0 1 1 1 1 Thi4 family NAD_binding_9 PF13454.1 gi|529076596|ref|YP_008375599.1| - 0.0014 18.4 0.7 0.021 14.6 0.0 2.5 3 0 0 3 3 3 1 FAD-NAD(P)-binding FAD_binding_3 PF01494.14 gi|529076596|ref|YP_008375599.1| - 0.002 17.2 0.7 0.0045 16.0 0.5 1.5 2 0 0 2 2 2 1 FAD binding domain K_oxygenase PF13434.1 gi|529076596|ref|YP_008375599.1| - 0.0024 16.8 0.0 0.026 13.4 0.0 2.0 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_8 PF13450.1 gi|529076596|ref|YP_008375599.1| - 0.019 14.9 0.5 0.043 13.8 0.3 1.6 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.16 gi|529076596|ref|YP_008375599.1| - 0.072 12.6 0.1 0.14 11.7 0.1 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Trp_halogenase PF04820.9 gi|529076596|ref|YP_008375599.1| - 0.075 11.6 0.9 0.28 9.7 0.3 2.1 2 0 0 2 2 2 0 Tryptophan halogenase Lycopene_cycl PF05834.7 gi|529076596|ref|YP_008375599.1| - 0.078 11.8 0.3 0.13 11.1 0.2 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein AhpC-TSA PF00578.16 gi|529076597|ref|YP_008375600.1| - 2.2e-15 56.4 0.0 2.8e-15 56.1 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|529076597|ref|YP_008375600.1| - 1.5e-07 31.0 0.0 1.8e-07 30.7 0.0 1.1 1 0 0 1 1 1 1 Redoxin PXT1 PF15214.1 gi|529076597|ref|YP_008375600.1| - 0.025 14.8 1.0 0.054 13.7 0.0 1.9 2 0 0 2 2 2 0 Peroxisomal testis-specific protein 1 Thioredoxin_8 PF13905.1 gi|529076597|ref|YP_008375600.1| - 0.059 13.4 0.0 0.1 12.7 0.0 1.3 1 1 0 1 1 1 0 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|529076597|ref|YP_008375600.1| - 0.07 13.3 0.0 0.096 12.8 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like domain Pyr_redox_2 PF07992.9 gi|529076598|ref|YP_008375601.1| - 2e-33 115.9 1.0 2.9e-33 115.4 0.7 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|529076598|ref|YP_008375601.1| - 3.1e-25 88.3 0.3 5.4e-25 87.5 0.2 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|529076598|ref|YP_008375601.1| - 9e-16 58.0 3.0 9.8e-14 51.5 0.1 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|529076598|ref|YP_008375601.1| - 1.4e-08 35.0 0.2 1.9e-05 24.8 0.0 2.3 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|529076598|ref|YP_008375601.1| - 1.7e-07 30.4 0.2 3.7e-07 29.3 0.2 1.5 1 1 0 1 1 1 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|529076598|ref|YP_008375601.1| - 0.00015 20.9 0.2 0.00024 20.2 0.1 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|529076598|ref|YP_008375601.1| - 0.00036 19.5 0.4 0.00036 19.5 0.2 2.3 2 1 0 3 3 3 1 FAD binding domain K_oxygenase PF13434.1 gi|529076598|ref|YP_008375601.1| - 0.0047 15.9 0.0 0.043 12.7 0.0 2.2 1 1 1 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) 3HCDH_N PF02737.13 gi|529076598|ref|YP_008375601.1| - 0.018 14.6 0.4 2.5 7.7 0.0 2.4 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Multi_ubiq PF14452.1 gi|529076598|ref|YP_008375601.1| - 0.046 13.7 0.3 3.3 7.7 0.1 2.9 2 0 0 2 2 2 0 Multiubiquitin DAO PF01266.19 gi|529076598|ref|YP_008375601.1| - 0.21 10.4 15.7 0.019 13.8 0.9 3.6 3 1 1 4 4 4 0 FAD dependent oxidoreductase HxlR PF01638.12 gi|529076599|ref|YP_008375602.1| - 7.5e-25 86.3 0.0 1e-24 85.9 0.0 1.2 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.9 gi|529076599|ref|YP_008375602.1| - 0.0046 16.6 0.0 0.0081 15.9 0.0 1.5 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.1 gi|529076599|ref|YP_008375602.1| - 0.079 12.9 0.0 0.23 11.4 0.0 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|529076599|ref|YP_008375602.1| - 0.1 12.9 0.0 0.15 12.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain ThiF PF00899.16 gi|529076600|ref|YP_008375603.1| - 6.6e-46 155.5 0.0 1e-45 154.9 0.0 1.3 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|529076600|ref|YP_008375603.1| - 6.1e-31 105.8 0.0 1.1e-30 105.0 0.0 1.4 1 0 0 1 1 1 1 MoeZ/MoeB domain Saccharop_dh PF03435.13 gi|529076600|ref|YP_008375603.1| - 0.0049 15.8 0.5 0.013 14.4 0.4 1.5 1 1 0 1 1 1 1 Saccharopine dehydrogenase adh_short PF00106.20 gi|529076600|ref|YP_008375603.1| - 0.14 12.0 1.0 0.25 11.2 0.7 1.6 1 1 0 1 1 1 0 short chain dehydrogenase IF2_N PF04760.10 gi|529076600|ref|YP_008375603.1| - 0.17 11.5 0.1 0.39 10.4 0.0 1.6 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region MMR_HSR1_C PF08438.5 gi|529076601|ref|YP_008375604.1| - 2.1e-28 98.7 0.0 3.1e-28 98.1 0.0 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|529076601|ref|YP_008375604.1| - 2.4e-18 66.1 0.0 1.9e-17 63.2 0.0 2.3 2 1 1 3 3 3 1 50S ribosome-binding GTPase TGS PF02824.16 gi|529076601|ref|YP_008375604.1| - 1.5e-10 40.7 0.0 3.2e-10 39.6 0.0 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|529076601|ref|YP_008375604.1| - 2.1e-05 23.8 0.0 0.00018 20.8 0.0 2.3 3 0 0 3 3 3 1 Ferrous iron transport protein B Miro PF08477.8 gi|529076601|ref|YP_008375604.1| - 0.062 13.7 0.0 0.31 11.5 0.0 2.2 2 1 0 2 2 2 0 Miro-like protein ArgK PF03308.11 gi|529076601|ref|YP_008375604.1| - 0.086 11.6 0.0 0.14 10.9 0.0 1.3 1 0 0 1 1 1 0 ArgK protein Dynamin_N PF00350.18 gi|529076601|ref|YP_008375604.1| - 0.1 12.3 0.2 0.64 9.8 0.0 2.2 3 0 0 3 3 3 0 Dynamin family TP6A_N PF04406.9 gi|529076602|ref|YP_008375605.1| - 3.6e-20 71.3 0.3 6.1e-20 70.6 0.2 1.3 1 0 0 1 1 1 1 Type IIB DNA topoisomerase Topo-VIb_trans PF09239.6 gi|529076603|ref|YP_008375606.1| - 9.2e-65 217.0 0.0 3.4e-64 215.2 0.0 1.9 2 0 0 2 2 2 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|529076603|ref|YP_008375606.1| - 5.1e-11 42.2 0.0 3.4e-09 36.4 0.0 3.2 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|529076603|ref|YP_008375606.1| - 7.1e-09 35.4 0.0 1.3e-05 24.9 0.0 2.5 2 0 0 2 2 2 2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Intein_splicing PF14890.1 gi|529076603|ref|YP_008375606.1| - 1.3e-06 27.5 0.0 5e-06 25.6 0.0 2.0 1 1 0 1 1 1 1 Intein splicing domain LAGLIDADG_3 PF14528.1 gi|529076603|ref|YP_008375606.1| - 0.00019 21.5 0.0 0.27 11.4 0.0 3.0 2 0 0 2 2 2 2 LAGLIDADG-like domain Hint PF01079.15 gi|529076603|ref|YP_008375606.1| - 0.00029 20.1 0.0 0.00056 19.1 0.0 1.4 1 0 0 1 1 1 1 Hint module Regulator_TrmB PF11495.3 gi|529076604|ref|YP_008375607.1| - 1.9e-54 184.1 1.7 2.7e-54 183.6 1.2 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.14 gi|529076604|ref|YP_008375607.1| - 9.8e-17 60.4 0.0 2e-16 59.4 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|529076604|ref|YP_008375607.1| - 0.00055 19.5 0.2 0.013 15.1 0.0 2.7 2 0 0 2 2 2 1 HTH domain HTH_24 PF13412.1 gi|529076604|ref|YP_008375607.1| - 0.00094 18.5 0.0 0.0025 17.1 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|529076604|ref|YP_008375607.1| - 0.0014 18.6 0.0 0.0037 17.3 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulator MarR_2 PF12802.2 gi|529076604|ref|YP_008375607.1| - 0.0034 17.0 0.0 0.0084 15.7 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|529076604|ref|YP_008375607.1| - 0.0042 16.6 0.0 0.025 14.1 0.0 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_36 PF13730.1 gi|529076604|ref|YP_008375607.1| - 0.0049 16.9 0.0 0.036 14.2 0.0 2.3 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|529076604|ref|YP_008375607.1| - 0.046 13.5 0.0 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain MarR PF01047.17 gi|529076604|ref|YP_008375607.1| - 0.058 13.1 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 MarR family FaeA PF04703.7 gi|529076604|ref|YP_008375607.1| - 0.13 12.4 0.0 0.38 10.9 0.0 1.8 1 1 0 1 1 1 0 FaeA-like protein PLDc_2 PF13091.1 gi|529076604|ref|YP_008375607.1| - 0.13 11.9 0.0 0.25 11.1 0.0 1.5 1 0 0 1 1 1 0 PLD-like domain DNA_gyraseB PF00204.20 gi|529076606|ref|YP_008375609.1| - 5.2e-59 198.3 0.2 1.1e-58 197.3 0.1 1.5 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.16 gi|529076606|ref|YP_008375609.1| - 8.6e-30 102.2 0.0 1.7e-29 101.3 0.0 1.5 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus Toprim PF01751.17 gi|529076606|ref|YP_008375609.1| - 2.1e-26 91.7 0.1 7.2e-26 90.0 0.0 2.0 2 0 0 2 2 2 1 Toprim domain HATPase_c PF02518.21 gi|529076606|ref|YP_008375609.1| - 4.8e-19 68.1 0.1 1.1e-18 66.9 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|529076606|ref|YP_008375609.1| - 1.3e-05 24.9 0.1 5.5e-05 22.8 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim_4 PF13662.1 gi|529076606|ref|YP_008375609.1| - 0.049 13.6 0.0 0.18 11.7 0.0 2.1 1 0 0 1 1 1 0 Toprim domain PAS_6 PF08348.6 gi|529076606|ref|YP_008375609.1| - 0.088 12.3 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 YheO-like PAS domain DNA_topoisoIV PF00521.15 gi|529076607|ref|YP_008375610.1| - 7.3e-153 509.3 0.0 9.2e-153 509.0 0.0 1.1 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.8 gi|529076607|ref|YP_008375610.1| - 4e-62 205.3 6.1 7.5e-15 53.9 0.1 6.6 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller PilJ PF13675.1 gi|529076607|ref|YP_008375610.1| - 0.077 13.3 2.3 0.15 12.4 0.9 2.0 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term IKI3 PF04762.7 gi|529076607|ref|YP_008375610.1| - 0.17 9.6 3.5 0.086 10.6 0.0 2.0 2 1 0 2 2 2 0 IKI3 family Frag1 PF10277.4 gi|529076608|ref|YP_008375611.1| - 0.059 12.8 0.1 0.059 12.8 0.1 1.0 1 0 0 1 1 1 0 Frag1/DRAM/Sfk1 family DUF211 PF02680.9 gi|529076609|ref|YP_008375612.1| - 1.6e-32 111.1 2.4 1.7e-32 111.0 1.7 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 VIT1 PF01988.14 gi|529076610|ref|YP_008375613.1| - 1.7e-18 66.9 13.5 4.4e-16 59.0 9.4 2.0 1 1 0 1 1 1 1 VIT family PDGLE PF13190.1 gi|529076610|ref|YP_008375613.1| - 0.41 10.3 4.0 4.1 7.1 2.8 2.5 1 1 0 1 1 1 0 PDGLE domain Adeno_E3 PF06040.6 gi|529076610|ref|YP_008375613.1| - 0.46 10.4 2.0 2.2 8.2 0.8 2.2 2 0 0 2 2 2 0 Adenovirus E3 protein PUA PF01472.15 gi|529076611|ref|YP_008375614.1| - 4.7e-17 61.4 2.4 8.5e-17 60.6 1.7 1.4 1 0 0 1 1 1 1 PUA domain RNB PF00773.14 gi|529076612|ref|YP_008375615.1| - 6.6e-77 258.9 0.0 9.9e-75 251.8 0.0 2.1 1 1 0 1 1 1 1 RNB domain SQS_PSY PF00494.14 gi|529076614|ref|YP_008375617.1| - 4.6e-61 206.4 7.5 5.8e-61 206.1 5.2 1.0 1 0 0 1 1 1 1 Squalene/phytoene synthase DUF552 PF04472.7 gi|529076615|ref|YP_008375618.1| - 5.5e-17 61.4 2.1 6.9e-17 61.1 1.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF552) DUF2088 PF09861.4 gi|529076615|ref|YP_008375618.1| - 0.025 13.6 0.1 0.029 13.3 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2088) ATP-grasp_3 PF02655.9 gi|529076615|ref|YP_008375618.1| - 0.12 12.2 0.1 0.16 11.8 0.1 1.1 1 0 0 1 1 1 0 ATP-grasp domain KIF1B PF12423.3 gi|529076616|ref|YP_008375619.1| - 0.099 12.6 0.0 0.22 11.6 0.0 1.6 1 0 0 1 1 1 0 Kinesin protein 1B HypA PF01155.14 gi|529076617|ref|YP_008375620.1| - 0.0043 16.7 3.5 0.034 13.8 0.2 2.2 2 0 0 2 2 2 1 Hydrogenase expression/synthesis hypA family RNHCP PF12647.2 gi|529076617|ref|YP_008375620.1| - 0.0085 15.9 1.7 0.034 13.9 0.2 2.2 2 0 0 2 2 2 1 RNHCP domain Zn-ribbon_8 PF09723.5 gi|529076617|ref|YP_008375620.1| - 0.0096 15.8 4.8 0.11 12.4 0.9 2.5 2 0 0 2 2 2 1 Zinc ribbon domain DZR PF12773.2 gi|529076617|ref|YP_008375620.1| - 0.028 14.2 2.1 0.65 9.8 0.3 2.4 2 0 0 2 2 2 0 Double zinc ribbon DUF1451 PF07295.6 gi|529076617|ref|YP_008375620.1| - 0.061 13.1 0.5 0.52 10.0 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1451) zf-ISL3 PF14690.1 gi|529076617|ref|YP_008375620.1| - 0.26 11.3 2.8 26 4.9 0.0 3.1 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TF_Zn_Ribbon PF08271.7 gi|529076617|ref|YP_008375620.1| - 0.28 10.5 7.1 19 4.6 0.1 4.5 3 1 0 3 3 3 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|529076617|ref|YP_008375620.1| - 0.33 10.4 3.6 39 3.9 0.1 3.3 3 0 0 3 3 3 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|529076617|ref|YP_008375620.1| - 0.7 9.1 6.9 17 4.7 0.2 3.2 2 1 1 3 3 3 0 zinc-ribbon domain DUF1660 PF07874.6 gi|529076617|ref|YP_008375620.1| - 1.8 8.8 3.7 1.9 8.8 0.3 2.6 2 1 0 2 2 2 0 Prophage protein (DUF1660) zf-TFIIB PF13453.1 gi|529076617|ref|YP_008375620.1| - 2.4 7.4 5.9 1.4 8.1 1.3 2.3 2 0 0 2 2 2 0 Transcription factor zinc-finger Zn_Tnp_IS1595 PF12760.2 gi|529076617|ref|YP_008375620.1| - 8.6 6.2 7.5 15 5.4 0.3 2.9 2 1 0 3 3 3 0 Transposase zinc-ribbon domain MarR_2 PF12802.2 gi|529076618|ref|YP_008375621.1| - 0.00084 18.9 0.1 0.0012 18.4 0.0 1.2 1 0 0 1 1 1 1 MarR family GntR PF00392.16 gi|529076618|ref|YP_008375621.1| - 0.0034 16.8 0.0 0.0081 15.5 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.2 gi|529076618|ref|YP_008375621.1| - 0.0061 16.3 0.0 0.0077 16.0 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain TFIIE_alpha PF02002.12 gi|529076618|ref|YP_008375621.1| - 0.05 13.1 0.4 0.082 12.4 0.2 1.3 1 1 0 1 1 1 0 TFIIE alpha subunit Rrf2 PF02082.15 gi|529076618|ref|YP_008375621.1| - 0.094 12.8 0.0 0.12 12.4 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator TrmB PF01978.14 gi|529076618|ref|YP_008375621.1| - 0.13 11.9 0.0 0.19 11.4 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Yip1 PF04893.12 gi|529076621|ref|YP_008375624.1| - 6.4e-12 45.3 18.9 8.3e-12 44.9 13.1 1.1 1 0 0 1 1 1 1 Yip1 domain DUF1282 PF06930.7 gi|529076621|ref|YP_008375624.1| - 0.019 14.6 10.6 0.021 14.4 7.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1282) Peptidase_M32 PF02074.10 gi|529076622|ref|YP_008375625.1| - 2.1e-144 481.8 0.2 2.5e-144 481.6 0.1 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase DUF2064 PF09837.4 gi|529076623|ref|YP_008375626.1| - 0.092 12.3 0.1 0.17 11.5 0.0 1.4 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2064) RHH_1 PF01402.16 gi|529076623|ref|YP_008375626.1| - 0.16 11.8 0.5 0.86 9.6 0.0 2.3 2 1 0 2 2 2 0 Ribbon-helix-helix protein, copG family Phage_integrase PF00589.17 gi|529076624|ref|YP_008375627.1| - 6.9e-16 58.4 0.0 1e-15 57.8 0.0 1.2 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|529076624|ref|YP_008375627.1| - 1.6e-09 37.7 0.1 3.5e-09 36.6 0.0 1.6 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|529076624|ref|YP_008375627.1| - 4.9e-06 26.7 0.0 9.2e-06 25.9 0.0 1.5 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain ABC_tran PF00005.22 gi|529076625|ref|YP_008375628.1| - 1.9e-30 105.9 0.0 2.6e-30 105.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|529076625|ref|YP_008375628.1| - 3.9e-12 46.7 0.0 1.6e-09 38.1 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|529076625|ref|YP_008375628.1| - 1.6e-05 24.4 0.1 3.9e-05 23.1 0.1 1.8 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|529076625|ref|YP_008375628.1| - 3.5e-05 23.1 0.0 0.13 11.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|529076625|ref|YP_008375628.1| - 8.2e-05 23.4 0.0 0.00016 22.4 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|529076625|ref|YP_008375628.1| - 9.1e-05 22.5 0.2 0.0002 21.4 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|529076625|ref|YP_008375628.1| - 0.00029 20.2 0.0 0.00063 19.2 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_28 PF13521.1 gi|529076625|ref|YP_008375628.1| - 0.0017 18.3 0.3 0.012 15.5 0.2 2.3 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|529076625|ref|YP_008375628.1| - 0.0019 17.6 0.1 1 8.7 0.1 2.6 2 1 0 2 2 2 1 IstB-like ATP binding protein SbcCD_C PF13558.1 gi|529076625|ref|YP_008375628.1| - 0.0042 16.9 0.4 0.012 15.5 0.3 1.7 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.1 gi|529076625|ref|YP_008375628.1| - 0.0068 16.7 0.1 0.01 16.1 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|529076625|ref|YP_008375628.1| - 0.011 15.1 0.0 0.014 14.8 0.0 1.5 1 1 0 1 1 1 0 AAA-like domain AAA_14 PF13173.1 gi|529076625|ref|YP_008375628.1| - 0.012 15.5 0.0 0.022 14.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|529076625|ref|YP_008375628.1| - 0.017 15.0 0.0 0.029 14.3 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase DUF258 PF03193.11 gi|529076625|ref|YP_008375628.1| - 0.019 14.1 0.0 0.029 13.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Miro PF08477.8 gi|529076625|ref|YP_008375628.1| - 0.033 14.6 0.0 0.054 13.9 0.0 1.3 1 0 0 1 1 1 0 Miro-like protein AAA_30 PF13604.1 gi|529076625|ref|YP_008375628.1| - 0.055 13.0 0.0 0.12 11.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|529076625|ref|YP_008375628.1| - 0.057 13.2 0.3 0.94 9.3 0.0 2.4 2 1 0 2 2 2 0 AAA domain DUF4597 PF15366.1 gi|529076625|ref|YP_008375628.1| - 0.069 12.7 0.2 0.15 11.6 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4597) AAA_13 PF13166.1 gi|529076625|ref|YP_008375628.1| - 0.19 10.1 0.0 0.33 9.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|529076625|ref|YP_008375628.1| - 0.27 11.0 1.8 0.81 9.4 0.1 2.4 2 1 0 2 2 2 0 Part of AAA domain CbiQ PF02361.11 gi|529076626|ref|YP_008375629.1| - 1.3e-24 87.0 10.4 1.7e-24 86.6 7.2 1.1 1 0 0 1 1 1 1 Cobalt transport protein CbiM PF01891.11 gi|529076627|ref|YP_008375630.1| - 3.5e-55 186.7 27.7 3.5e-55 186.7 19.2 1.8 2 0 0 2 2 2 1 Cobalt uptake substrate-specific transmembrane region PDGLE PF13190.1 gi|529076627|ref|YP_008375630.1| - 1.3e-09 37.5 0.4 1.3e-09 37.5 0.3 2.6 2 0 0 2 2 2 1 PDGLE domain TM_helix PF05552.7 gi|529076627|ref|YP_008375630.1| - 0.04 13.5 1.1 0.3 10.7 0.6 2.4 2 0 0 2 2 2 0 Conserved TM helix NikR_C PF08753.6 gi|529076628|ref|YP_008375631.1| - 2.3e-23 81.8 3.2 3.5e-23 81.2 2.2 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|529076628|ref|YP_008375631.1| - 0.00038 20.2 0.0 0.0061 16.4 0.0 2.4 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family TrmB PF01978.14 gi|529076629|ref|YP_008375632.1| - 2.9e-19 68.5 0.3 9.7e-19 66.8 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|529076629|ref|YP_008375632.1| - 0.002 17.7 0.1 0.0066 16.0 0.0 1.9 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|529076629|ref|YP_008375632.1| - 0.0027 17.2 0.2 0.017 14.7 0.0 2.5 3 0 0 3 3 3 1 IclR helix-turn-helix domain Regulator_TrmB PF11495.3 gi|529076629|ref|YP_008375632.1| - 0.0084 15.1 0.0 0.012 14.6 0.0 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB DUF2250 PF10007.4 gi|529076629|ref|YP_008375632.1| - 0.013 15.4 0.0 0.027 14.3 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Gp58 PF07902.6 gi|529076629|ref|YP_008375632.1| - 0.014 13.6 0.2 0.019 13.2 0.1 1.1 1 0 0 1 1 1 0 gp58-like protein Amino_oxidase PF01593.19 gi|529076631|ref|YP_008375634.1| - 9e-17 61.2 5.0 2e-11 43.6 0.9 2.0 1 1 1 2 2 2 2 Flavin containing amine oxidoreductase DAO PF01266.19 gi|529076631|ref|YP_008375634.1| - 3.4e-12 45.9 0.9 3e-05 23.0 0.2 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|529076631|ref|YP_008375634.1| - 4.2e-12 45.8 0.4 1.1e-11 44.6 0.3 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|529076631|ref|YP_008375634.1| - 1.4e-07 31.8 1.2 7.5e-07 29.4 0.8 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|529076631|ref|YP_008375634.1| - 0.00022 20.4 0.7 0.00035 19.7 0.5 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|529076631|ref|YP_008375634.1| - 0.0013 18.6 0.0 0.0018 18.1 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|529076631|ref|YP_008375634.1| - 0.0022 17.7 1.1 1.5 8.5 0.1 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding HI0933_like PF03486.9 gi|529076631|ref|YP_008375634.1| - 0.0048 15.4 0.6 2.4 6.5 0.0 2.1 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_3 PF01494.14 gi|529076631|ref|YP_008375634.1| - 0.025 13.6 0.3 0.049 12.6 0.2 1.4 1 0 0 1 1 1 0 FAD binding domain Trp_halogenase PF04820.9 gi|529076631|ref|YP_008375634.1| - 0.044 12.4 1.1 0.065 11.8 0.7 1.2 1 0 0 1 1 1 0 Tryptophan halogenase Pyr_redox PF00070.22 gi|529076631|ref|YP_008375634.1| - 0.11 12.8 0.9 0.79 10.1 0.6 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|529076631|ref|YP_008375634.1| - 0.56 8.9 4.2 3.2 6.4 2.6 2.1 2 0 0 2 2 2 0 FAD binding domain DDE_Tnp_IS1595 PF12762.2 gi|529076634|ref|YP_008375637.1| - 2.3e-10 40.4 0.1 2.4e-10 40.4 0.1 1.1 1 0 0 1 1 1 1 ISXO2-like transposase domain DDE_Tnp_IS240 PF13610.1 gi|529076634|ref|YP_008375637.1| - 0.026 14.4 0.0 0.034 14.1 0.0 1.1 1 0 0 1 1 1 0 DDE domain zinc_ribbon_2 PF13240.1 gi|529076636|ref|YP_008375639.1| - 0.00035 19.9 0.1 0.0017 17.7 0.0 1.9 1 1 0 1 1 1 1 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|529076636|ref|YP_008375639.1| - 0.00046 19.9 1.4 0.0012 18.6 1.0 1.7 1 1 0 1 1 1 1 PhnA Zinc-Ribbon DNA_RNApol_7kD PF03604.8 gi|529076636|ref|YP_008375639.1| - 0.00069 19.0 1.5 0.017 14.5 1.4 2.0 1 1 1 2 2 2 2 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.1 gi|529076636|ref|YP_008375639.1| - 0.0011 18.0 0.2 0.13 11.4 0.0 2.2 2 0 0 2 2 2 1 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|529076636|ref|YP_008375639.1| - 0.0012 18.4 0.3 0.0024 17.5 0.2 1.5 1 1 0 1 1 1 1 RNA polymerases M/15 Kd subunit TF_Zn_Ribbon PF08271.7 gi|529076636|ref|YP_008375639.1| - 0.0026 17.0 1.7 0.0033 16.7 1.2 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding DZR PF12773.2 gi|529076636|ref|YP_008375639.1| - 0.0035 17.1 0.4 0.0075 16.0 0.2 1.6 1 1 0 1 1 1 1 Double zinc ribbon Nudix_N_2 PF14803.1 gi|529076636|ref|YP_008375639.1| - 0.0067 16.0 1.1 1.4 8.7 0.1 2.2 2 0 0 2 2 2 1 Nudix N-terminal zf-TFIIB PF13453.1 gi|529076636|ref|YP_008375639.1| - 0.0072 15.4 0.4 0.94 8.7 0.1 2.2 2 0 0 2 2 2 1 Transcription factor zinc-finger zf-NADH-PPase PF09297.6 gi|529076636|ref|YP_008375639.1| - 0.0076 15.7 1.1 2.8 7.5 0.1 2.2 2 0 0 2 2 2 2 NADH pyrophosphatase zinc ribbon domain zf-HYPF PF07503.7 gi|529076636|ref|YP_008375639.1| - 0.01 15.1 0.2 1.2 8.6 0.0 2.1 2 0 0 2 2 2 0 HypF finger DUF329 PF03884.9 gi|529076636|ref|YP_008375639.1| - 0.011 15.2 0.7 1.4 8.5 0.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF329) UPF0547 PF10571.4 gi|529076636|ref|YP_008375639.1| - 0.013 15.1 3.4 0.074 12.7 2.1 2.0 1 1 1 2 2 2 0 Uncharacterised protein family UPF0547 zf-C4_Topoisom PF01396.14 gi|529076636|ref|YP_008375639.1| - 0.016 14.7 0.5 0.54 9.8 0.1 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Lar_restr_allev PF14354.1 gi|529076636|ref|YP_008375639.1| - 0.02 15.1 2.3 0.03 14.6 1.6 1.4 1 1 0 1 1 1 0 Restriction alleviation protein Lar zinc_ribbon_5 PF13719.1 gi|529076636|ref|YP_008375639.1| - 0.024 14.2 0.6 0.075 12.6 0.4 1.8 1 1 1 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|529076636|ref|YP_008375639.1| - 0.03 13.9 0.1 0.039 13.5 0.1 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zinc-ribbons_6 PF07191.7 gi|529076636|ref|YP_008375639.1| - 0.045 13.5 0.3 0.062 13.1 0.2 1.3 1 1 0 1 1 1 0 zinc-ribbons Prok-RING_1 PF14446.1 gi|529076636|ref|YP_008375639.1| - 0.046 13.4 5.2 0.11 12.2 3.6 1.6 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 Zn-ribbon_8 PF09723.5 gi|529076636|ref|YP_008375639.1| - 0.048 13.6 4.0 1 9.3 0.4 2.0 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_4 PF13717.1 gi|529076636|ref|YP_008375639.1| - 0.056 13.1 0.8 0.32 10.7 0.5 2.0 1 1 1 2 2 2 0 zinc-ribbon domain HypA PF01155.14 gi|529076636|ref|YP_008375639.1| - 0.062 12.9 0.3 0.072 12.7 0.2 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-tcix PF14952.1 gi|529076636|ref|YP_008375639.1| - 0.071 12.4 1.6 2.1 7.7 0.1 2.1 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-IS66 PF13005.2 gi|529076636|ref|YP_008375639.1| - 0.095 12.6 3.7 2.5 8.1 1.4 2.2 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 Ribosomal_S27e PF01667.12 gi|529076636|ref|YP_008375639.1| - 0.096 12.2 0.6 0.14 11.6 0.4 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 Cys_rich_CPXG PF14255.1 gi|529076636|ref|YP_008375639.1| - 0.1 12.4 2.6 0.23 11.2 1.8 1.6 1 1 0 1 1 1 0 Cysteine-rich CPXCG Elf1 PF05129.8 gi|529076636|ref|YP_008375639.1| - 0.1 12.2 0.2 0.14 11.8 0.1 1.2 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like CpXC PF14353.1 gi|529076636|ref|YP_008375639.1| - 0.12 12.3 0.2 4.3 7.3 0.0 2.0 2 0 0 2 2 2 0 CpXC protein YhfH PF14149.1 gi|529076636|ref|YP_008375639.1| - 0.13 12.1 1.4 8.6 6.2 0.0 2.1 2 0 0 2 2 2 0 YhfH-like protein DUF983 PF06170.7 gi|529076636|ref|YP_008375639.1| - 0.17 12.0 0.8 12 6.1 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF983) DUF1610 PF07754.6 gi|529076636|ref|YP_008375639.1| - 0.24 11.5 5.9 3.8 7.7 0.7 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) DNA_ligase_ZBD PF03119.11 gi|529076636|ref|YP_008375639.1| - 0.56 9.9 5.3 0.23 11.1 0.7 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-dskA_traR PF01258.12 gi|529076636|ref|YP_008375639.1| - 1.7 8.4 4.5 11 5.8 3.1 2.1 1 1 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger Rubredoxin PF00301.15 gi|529076636|ref|YP_008375639.1| - 1.9 8.4 4.3 13 5.7 0.2 2.4 2 1 0 2 2 2 0 Rubredoxin Gly-zipper_OmpA PF13436.1 gi|529076638|ref|YP_008375641.1| - 7.1e-05 22.4 9.3 7.7e-05 22.3 6.5 1.1 1 0 0 1 1 1 1 Glycine-zipper containing OmpA-like membrane domain Rick_17kDa_Anti PF05433.10 gi|529076638|ref|YP_008375641.1| - 0.00011 21.7 15.0 0.00016 21.2 10.4 1.3 1 0 0 1 1 1 1 Glycine zipper 2TM domain Gly-zipper_Omp PF13488.1 gi|529076638|ref|YP_008375641.1| - 0.00061 19.3 20.1 0.0041 16.7 14.0 1.9 1 1 1 2 2 2 2 Glycine zipper Gly-zipper_YMGG PF13441.1 gi|529076638|ref|YP_008375641.1| - 0.00065 19.1 20.4 0.0011 18.4 14.1 1.4 1 1 0 1 1 1 1 YMGG-like Gly-zipper DUF456 PF04306.8 gi|529076638|ref|YP_008375641.1| - 0.0084 16.1 2.4 0.0091 16.0 1.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF456) Bacteriocin_IIc PF10439.4 gi|529076638|ref|YP_008375641.1| - 0.0099 15.9 9.6 0.013 15.6 6.6 1.2 1 0 0 1 1 1 1 Bacteriocin class II with double-glycine leader peptide TraT PF05818.7 gi|529076638|ref|YP_008375641.1| - 0.86 8.9 4.6 0.95 8.8 3.2 1.1 1 0 0 1 1 1 0 Enterobacterial TraT complement resistance protein Chorismate_synt PF01264.16 gi|529076639|ref|YP_008375642.1| - 7.1e-120 399.6 0.0 8.3e-120 399.4 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase UDG PF03167.14 gi|529076641|ref|YP_008375644.1| - 6.1e-21 74.4 0.0 7.6e-21 74.1 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily CBS PF00571.23 gi|529076642|ref|YP_008375645.1| - 1.5e-28 98.2 5.3 2.1e-15 56.2 0.7 2.1 2 0 0 2 2 2 2 CBS domain DUF2064 PF09837.4 gi|529076643|ref|YP_008375646.1| - 8.7e-05 22.1 0.0 0.00014 21.4 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2064) AAA PF00004.24 gi|529076644|ref|YP_008375647.1| - 1.3e-100 332.8 0.0 5.4e-49 165.7 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|529076644|ref|YP_008375647.1| - 8.6e-25 86.5 0.1 5.2e-24 84.0 0.1 2.2 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.9 gi|529076644|ref|YP_008375647.1| - 2.6e-18 66.4 0.1 3.1e-09 36.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|529076644|ref|YP_008375647.1| - 3.4e-16 59.0 0.0 1e-07 31.2 0.0 2.7 3 0 0 3 3 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|529076644|ref|YP_008375647.1| - 5.3e-15 55.8 0.1 3.7e-07 30.3 0.0 3.2 3 1 0 3 3 2 2 AAA ATPase domain CDC48_2 PF02933.12 gi|529076644|ref|YP_008375647.1| - 2.4e-14 52.7 0.6 5.9e-14 51.4 0.4 1.7 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_22 PF13401.1 gi|529076644|ref|YP_008375647.1| - 3e-13 50.0 0.4 0.00011 22.3 0.0 4.0 2 2 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|529076644|ref|YP_008375647.1| - 7.1e-12 45.3 0.0 0.00016 21.5 0.0 2.8 3 0 0 3 3 2 2 AAA domain AAA_33 PF13671.1 gi|529076644|ref|YP_008375647.1| - 3.3e-11 43.2 0.1 7.6e-05 22.6 0.0 3.0 3 1 0 3 3 2 2 AAA domain AAA_5 PF07728.9 gi|529076644|ref|YP_008375647.1| - 8.9e-11 41.6 1.4 0.00075 19.2 0.1 4.4 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.8 gi|529076644|ref|YP_008375647.1| - 3.3e-10 39.2 0.0 0.00016 20.5 0.0 2.6 2 0 0 2 2 2 2 TIP49 C-terminus AAA_17 PF13207.1 gi|529076644|ref|YP_008375647.1| - 3.4e-10 40.7 6.1 0.00037 21.2 0.3 3.9 2 2 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|529076644|ref|YP_008375647.1| - 6.2e-10 38.6 0.1 0.0023 17.6 0.0 3.0 3 0 0 3 3 2 2 Part of AAA domain Zeta_toxin PF06414.7 gi|529076644|ref|YP_008375647.1| - 1.2e-09 37.5 0.1 0.002 17.2 0.0 3.0 3 0 0 3 3 3 2 Zeta toxin IstB_IS21 PF01695.12 gi|529076644|ref|YP_008375647.1| - 2.2e-09 36.9 0.0 0.00028 20.3 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|529076644|ref|YP_008375647.1| - 4.1e-08 33.3 0.0 0.015 15.4 0.0 2.6 2 0 0 2 2 2 2 RNA helicase AAA_25 PF13481.1 gi|529076644|ref|YP_008375647.1| - 3.5e-07 29.8 7.9 0.1 12.0 0.1 4.3 2 2 1 3 3 3 3 AAA domain AAA_28 PF13521.1 gi|529076644|ref|YP_008375647.1| - 4.1e-07 30.1 0.0 0.031 14.2 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.1 gi|529076644|ref|YP_008375647.1| - 4.4e-07 30.2 2.6 0.048 13.9 0.1 3.7 3 1 0 3 3 3 2 AAA domain Mg_chelatase PF01078.16 gi|529076644|ref|YP_008375647.1| - 1e-06 28.1 0.4 0.03 13.4 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_3 PF07726.6 gi|529076644|ref|YP_008375647.1| - 1.9e-06 27.4 0.0 0.026 14.1 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|529076644|ref|YP_008375647.1| - 2.7e-06 26.9 0.0 0.097 12.1 0.0 3.6 4 0 0 4 4 4 2 Sigma-54 interaction domain Sigma54_activ_2 PF14532.1 gi|529076644|ref|YP_008375647.1| - 2.7e-06 27.4 0.0 0.11 12.5 0.0 3.5 4 0 0 4 4 3 2 Sigma-54 interaction domain DUF815 PF05673.8 gi|529076644|ref|YP_008375647.1| - 3.8e-06 26.0 0.0 0.008 15.1 0.0 2.8 2 1 0 2 2 2 2 Protein of unknown function (DUF815) PhoH PF02562.11 gi|529076644|ref|YP_008375647.1| - 4.8e-06 25.9 0.1 0.03 13.5 0.0 2.4 2 0 0 2 2 2 2 PhoH-like protein NACHT PF05729.7 gi|529076644|ref|YP_008375647.1| - 5e-06 26.2 0.2 0.22 11.1 0.0 3.8 4 0 0 4 4 4 2 NACHT domain KaiC PF06745.8 gi|529076644|ref|YP_008375647.1| - 5e-06 25.8 0.2 0.2 10.7 0.0 3.4 2 1 1 3 3 3 2 KaiC NB-ARC PF00931.17 gi|529076644|ref|YP_008375647.1| - 1.2e-05 24.3 0.0 0.057 12.2 0.0 2.4 2 0 0 2 2 2 2 NB-ARC domain Arch_ATPase PF01637.13 gi|529076644|ref|YP_008375647.1| - 1.6e-05 24.7 0.0 0.43 10.2 0.0 3.4 2 1 1 3 3 3 2 Archaeal ATPase DUF2075 PF09848.4 gi|529076644|ref|YP_008375647.1| - 1.8e-05 23.8 0.2 0.27 10.1 0.0 2.9 3 0 0 3 3 3 2 Uncharacterized conserved protein (DUF2075) ABC_tran PF00005.22 gi|529076644|ref|YP_008375647.1| - 2.6e-05 24.5 0.1 0.14 12.4 0.0 2.9 3 0 0 3 3 2 2 ABC transporter AAA_30 PF13604.1 gi|529076644|ref|YP_008375647.1| - 3.5e-05 23.4 0.0 0.3 10.6 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_24 PF13479.1 gi|529076644|ref|YP_008375647.1| - 3.9e-05 23.3 0.0 0.047 13.2 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_11 PF13086.1 gi|529076644|ref|YP_008375647.1| - 9e-05 22.1 0.0 0.36 10.3 0.0 2.5 2 0 0 2 2 2 2 AAA domain NTPase_1 PF03266.10 gi|529076644|ref|YP_008375647.1| - 0.0001 22.0 1.2 0.18 11.5 0.0 3.7 2 2 1 3 3 3 1 NTPase Parvo_NS1 PF01057.12 gi|529076644|ref|YP_008375647.1| - 0.00011 21.2 0.0 0.31 9.8 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 UPF0079 PF02367.12 gi|529076644|ref|YP_008375647.1| - 0.00013 21.5 0.0 0.5 10.0 0.0 2.5 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 Bac_DnaA PF00308.13 gi|529076644|ref|YP_008375647.1| - 0.00045 19.9 0.0 0.12 11.9 0.0 2.5 2 0 0 2 2 2 1 Bacterial dnaA protein ResIII PF04851.10 gi|529076644|ref|YP_008375647.1| - 0.00078 19.3 0.0 2.1 8.1 0.0 2.9 3 0 0 3 3 2 1 Type III restriction enzyme, res subunit T2SE PF00437.15 gi|529076644|ref|YP_008375647.1| - 0.0012 17.8 0.0 1.1 8.1 0.0 2.7 2 1 0 2 2 2 2 Type II/IV secretion system protein ATP-synt_ab PF00006.20 gi|529076644|ref|YP_008375647.1| - 0.0055 16.2 0.0 0.61 9.5 0.0 2.7 2 1 1 3 3 3 1 ATP synthase alpha/beta family, nucleotide-binding domain Molydop_binding PF01568.16 gi|529076644|ref|YP_008375647.1| - 0.0059 16.4 0.0 0.026 14.3 0.0 2.0 2 0 0 2 2 1 1 Molydopterin dinucleotide binding domain KAP_NTPase PF07693.9 gi|529076644|ref|YP_008375647.1| - 0.0076 15.2 0.1 2.6 6.9 0.0 3.2 2 2 2 4 4 4 1 KAP family P-loop domain Viral_helicase1 PF01443.13 gi|529076644|ref|YP_008375647.1| - 0.017 14.6 0.0 2.1 7.8 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_29 PF13555.1 gi|529076644|ref|YP_008375647.1| - 0.032 13.7 0.0 4.7 6.8 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain SKI PF01202.17 gi|529076644|ref|YP_008375647.1| - 0.036 13.9 0.0 5.3 6.8 0.0 2.6 2 0 0 2 2 2 0 Shikimate kinase Guanylate_kin PF00625.16 gi|529076644|ref|YP_008375647.1| - 0.036 13.5 0.8 18 4.6 0.0 3.7 3 2 1 4 4 3 0 Guanylate kinase AFG1_ATPase PF03969.11 gi|529076644|ref|YP_008375647.1| - 0.036 12.8 0.0 3.2 6.4 0.0 2.5 2 0 0 2 2 2 0 AFG1-like ATPase KTI12 PF08433.5 gi|529076644|ref|YP_008375647.1| - 0.037 13.2 0.0 8.8 5.4 0.0 2.4 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Torsin PF06309.6 gi|529076644|ref|YP_008375647.1| - 0.056 13.3 0.0 4.6 7.1 0.0 2.4 2 0 0 2 2 2 0 Torsin PIF1 PF05970.9 gi|529076644|ref|YP_008375647.1| - 0.091 11.6 0.0 2.5 6.9 0.0 2.1 2 0 0 2 2 2 0 PIF1-like helicase Zot PF05707.7 gi|529076644|ref|YP_008375647.1| - 0.13 11.7 0.5 28 4.1 0.1 3.3 2 1 0 2 2 2 0 Zonular occludens toxin (Zot) DAP3 PF10236.4 gi|529076644|ref|YP_008375647.1| - 0.15 10.9 0.0 7.7 5.3 0.0 2.3 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 HJURP_C PF12347.3 gi|529076644|ref|YP_008375647.1| - 0.22 11.1 0.3 0.69 9.5 0.2 1.8 1 0 0 1 1 1 0 Holliday junction regulator protein family C-terminal repeat DEAD PF00270.24 gi|529076644|ref|YP_008375647.1| - 0.29 10.6 1.5 46 3.4 0.0 3.4 2 2 1 4 4 4 0 DEAD/DEAH box helicase Pantoate_transf PF02548.10 gi|529076646|ref|YP_008375649.1| - 2.2e-98 328.5 0.1 2.5e-98 328.3 0.1 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.1 gi|529076646|ref|YP_008375649.1| - 4.5e-09 35.8 2.3 1.5e-08 34.2 1.4 2.0 1 1 1 2 2 2 1 Phosphoenolpyruvate phosphomutase Amidohydro_2 PF04909.9 gi|529076646|ref|YP_008375649.1| - 0.027 14.0 0.2 0.051 13.1 0.1 1.4 1 0 0 1 1 1 0 Amidohydrolase MARVEL PF01284.18 gi|529076647|ref|YP_008375650.1| - 0.046 13.5 1.9 0.053 13.3 1.3 1.1 1 0 0 1 1 1 0 Membrane-associating domain HAD_2 PF13419.1 gi|529076648|ref|YP_008375651.1| - 4.3e-13 49.8 0.2 3.2e-11 43.7 0.1 2.1 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|529076648|ref|YP_008375651.1| - 3.6e-07 30.8 0.5 0.0001 22.7 0.0 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|529076648|ref|YP_008375651.1| - 6.7e-05 22.5 0.1 0.00019 21.0 0.0 1.8 2 0 0 2 2 2 1 HAD-hyrolase-like HAD PF12710.2 gi|529076648|ref|YP_008375651.1| - 0.0021 18.2 0.1 0.0074 16.4 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Prenyltransf PF01255.14 gi|529076649|ref|YP_008375652.1| - 6.3e-28 97.4 0.0 1.3e-27 96.4 0.0 1.5 2 0 0 2 2 2 1 Putative undecaprenyl diphosphate synthase DUF92 PF01940.11 gi|529076650|ref|YP_008375653.1| - 6.1e-63 211.9 19.8 6.1e-63 211.9 13.7 2.4 2 1 0 2 2 2 1 Integral membrane protein DUF92 DUF3270 PF11674.3 gi|529076650|ref|YP_008375653.1| - 2.1 8.4 9.5 0.32 11.0 0.4 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3270) Acetyltransf_1 PF00583.19 gi|529076651|ref|YP_008375654.1| - 2.7e-17 62.5 0.1 4e-17 62.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|529076651|ref|YP_008375654.1| - 2e-13 50.4 0.1 4.2e-13 49.4 0.1 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|529076651|ref|YP_008375654.1| - 7.8e-12 45.1 0.0 1.1e-11 44.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|529076651|ref|YP_008375654.1| - 1.3e-07 31.6 0.2 1.7e-07 31.2 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|529076651|ref|YP_008375654.1| - 1.3e-07 31.2 0.0 2.3e-07 30.4 0.0 1.4 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|529076651|ref|YP_008375654.1| - 1.8e-05 24.6 0.0 8e-05 22.4 0.0 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|529076651|ref|YP_008375654.1| - 2.6e-05 24.1 0.0 4e-05 23.5 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|529076651|ref|YP_008375654.1| - 3.9e-05 23.2 0.0 6.1e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|529076651|ref|YP_008375654.1| - 7.3e-05 22.7 0.0 0.00012 22.0 0.0 1.4 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|529076651|ref|YP_008375654.1| - 0.00046 20.3 0.0 0.001 19.2 0.0 1.5 1 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.1 gi|529076651|ref|YP_008375654.1| - 0.018 14.8 0.0 0.037 13.7 0.0 1.5 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase Glyoxalase_2 PF12681.2 gi|529076651|ref|YP_008375654.1| - 0.025 15.2 0.5 0.35 11.4 0.1 2.2 1 1 1 2 2 2 0 Glyoxalase-like domain Toprim_4 PF13662.1 gi|529076652|ref|YP_008375655.1| - 1.3e-11 44.3 3.1 1.1e-10 41.3 0.3 2.8 2 0 0 2 2 2 1 Toprim domain Toprim_2 PF13155.1 gi|529076652|ref|YP_008375655.1| - 0.002 18.4 0.0 0.0081 16.4 0.0 2.1 1 1 1 2 2 2 1 Toprim-like Toprim PF01751.17 gi|529076652|ref|YP_008375655.1| - 0.0069 16.3 0.1 0.038 13.9 0.1 2.3 1 1 0 1 1 1 1 Toprim domain DUF3311 PF11755.3 gi|529076653|ref|YP_008375656.1| - 1.6e-11 43.5 15.5 2.2e-11 43.1 10.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) TRAP-gamma PF07074.7 gi|529076653|ref|YP_008375656.1| - 0.53 9.8 3.8 0.6 9.6 2.7 1.2 1 0 0 1 1 1 0 Translocon-associated protein, gamma subunit (TRAP-gamma) FA_desaturase PF00487.19 gi|529076653|ref|YP_008375656.1| - 0.89 8.9 11.6 0.94 8.8 8.0 1.0 1 0 0 1 1 1 0 Fatty acid desaturase SSF PF00474.12 gi|529076654|ref|YP_008375657.1| - 5.8e-46 156.9 24.8 7.7e-46 156.5 17.2 1.1 1 0 0 1 1 1 1 Sodium:solute symporter family DUF3918 PF13056.1 gi|529076654|ref|YP_008375657.1| - 0.26 10.6 10.5 0.3 10.4 0.1 3.5 4 0 0 4 4 4 0 Protein of unknown function (DUF3918) ArdA PF07275.6 gi|529076655|ref|YP_008375658.1| - 0.11 12.8 0.4 3.5 7.8 0.0 2.2 2 0 0 2 2 2 0 Antirestriction protein (ArdA) Glutaredoxin PF00462.19 gi|529076656|ref|YP_008375659.1| - 1.8e-14 53.4 0.0 2.4e-14 53.0 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin BolA PF01722.13 gi|529076657|ref|YP_008375660.1| - 1.9e-17 62.9 0.0 2.3e-17 62.7 0.0 1.1 1 0 0 1 1 1 1 BolA-like protein tRNA-synt_1 PF00133.17 gi|529076658|ref|YP_008375661.1| - 2e-122 409.2 0.0 1.7e-121 406.1 0.0 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|529076658|ref|YP_008375661.1| - 7.8e-31 106.8 0.1 1.5e-30 105.9 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|529076658|ref|YP_008375661.1| - 8.5e-24 83.9 1.0 7.4e-12 44.6 0.0 3.8 3 2 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.1 gi|529076658|ref|YP_008375661.1| - 2e-06 27.2 0.0 7.1e-06 25.4 0.0 1.9 1 1 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.13 gi|529076658|ref|YP_008375661.1| - 0.00013 20.7 0.0 0.0027 16.4 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1e PF01406.14 gi|529076658|ref|YP_008375661.1| - 0.00099 18.3 0.0 0.2 10.7 0.0 2.7 2 1 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain DZR PF12773.2 gi|529076658|ref|YP_008375661.1| - 0.018 14.8 0.5 0.37 10.6 0.1 2.3 2 0 0 2 2 2 0 Double zinc ribbon DUF2863 PF11062.3 gi|529076658|ref|YP_008375661.1| - 0.03 12.4 0.1 0.059 11.4 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2863) zf-RING_3 PF14369.1 gi|529076658|ref|YP_008375661.1| - 0.91 9.5 6.0 2.5 8.1 1.2 3.0 2 0 0 2 2 2 0 zinc-finger Zn-ribbon_8 PF09723.5 gi|529076658|ref|YP_008375661.1| - 1.2 9.1 7.9 6 6.9 3.2 3.0 2 1 0 2 2 2 0 Zinc ribbon domain zf-dskA_traR PF01258.12 gi|529076658|ref|YP_008375661.1| - 3.5 7.4 9.2 0.16 11.7 0.2 2.8 3 0 0 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger DUF35_N PF12172.3 gi|529076658|ref|YP_008375661.1| - 4.7 7.2 9.5 20 5.2 0.9 3.4 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) TrkA_C PF02080.16 gi|529076660|ref|YP_008375663.1| - 1.3e-05 24.7 0.0 4.5e-05 22.9 0.0 2.0 1 0 0 1 1 1 1 TrkA-C domain CbiA PF01656.18 gi|529076661|ref|YP_008375664.1| - 3.3e-22 78.8 0.0 4.9e-22 78.2 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain KaiC PF06745.8 gi|529076661|ref|YP_008375664.1| - 2.2e-07 30.2 0.0 0.00033 19.8 0.0 2.7 2 1 0 2 2 2 1 KaiC ParA PF10609.4 gi|529076661|ref|YP_008375664.1| - 7.7e-07 28.9 0.2 1.5e-06 28.0 0.1 1.5 1 0 0 1 1 1 1 ParA/MinD ATPase like AAA_26 PF13500.1 gi|529076661|ref|YP_008375664.1| - 1.9e-06 27.6 1.6 0.0001 22.0 1.1 2.3 1 1 0 1 1 1 1 AAA domain AAA_31 PF13614.1 gi|529076661|ref|YP_008375664.1| - 0.00019 21.4 0.0 0.0042 17.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain MipZ PF09140.6 gi|529076661|ref|YP_008375664.1| - 0.0013 17.8 0.0 0.002 17.2 0.0 1.3 1 0 0 1 1 1 1 ATPase MipZ PRK PF00485.13 gi|529076661|ref|YP_008375664.1| - 0.027 14.0 0.0 0.042 13.3 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family NACHT PF05729.7 gi|529076661|ref|YP_008375664.1| - 0.047 13.3 0.0 6.4 6.3 0.0 2.4 2 0 0 2 2 2 0 NACHT domain AAA PF00004.24 gi|529076661|ref|YP_008375664.1| - 0.059 13.5 0.1 9.1 6.4 0.0 2.5 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) FTHFS PF01268.14 gi|529076661|ref|YP_008375664.1| - 0.16 9.9 0.1 0.23 9.4 0.0 1.2 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase ArsA_ATPase PF02374.10 gi|529076661|ref|YP_008375664.1| - 0.19 10.7 0.2 0.51 9.3 0.0 1.7 2 0 0 2 2 2 0 Anion-transporting ATPase CbiA PF01656.18 gi|529076662|ref|YP_008375665.1| - 6.5e-19 68.1 0.1 8.5e-19 67.7 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|529076662|ref|YP_008375665.1| - 1.8e-07 31.2 0.0 2.7e-07 30.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|529076662|ref|YP_008375665.1| - 6.6e-05 22.8 2.7 0.00039 20.3 1.8 2.2 1 1 0 1 1 1 1 AAA domain Fer4_NifH PF00142.13 gi|529076662|ref|YP_008375665.1| - 7.6e-05 22.0 0.1 0.18 10.9 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_17 PF13207.1 gi|529076662|ref|YP_008375665.1| - 0.00034 21.4 1.4 0.0034 18.1 0.9 2.4 1 1 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|529076662|ref|YP_008375665.1| - 0.00057 19.0 2.5 0.0078 15.3 0.2 2.7 1 1 0 2 2 2 1 ATPase MipZ GTP_EFTU PF00009.22 gi|529076662|ref|YP_008375665.1| - 0.0047 16.3 0.1 0.0076 15.6 0.1 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain ArsA_ATPase PF02374.10 gi|529076662|ref|YP_008375665.1| - 0.0077 15.3 1.4 0.029 13.4 0.2 2.0 2 0 0 2 2 2 1 Anion-transporting ATPase ParA PF10609.4 gi|529076662|ref|YP_008375665.1| - 0.026 14.4 1.3 0.036 13.9 0.1 1.8 2 0 0 2 2 2 0 ParA/MinD ATPase like DUF429 PF04250.8 gi|529076662|ref|YP_008375665.1| - 0.026 13.7 0.8 3.2 6.9 0.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF429) NAD_binding_10 PF13460.1 gi|529076662|ref|YP_008375665.1| - 0.035 14.1 2.2 1.3 8.9 0.1 2.2 2 0 0 2 2 2 0 NADH(P)-binding AAA_18 PF13238.1 gi|529076662|ref|YP_008375665.1| - 0.041 14.1 1.8 0.084 13.1 0.2 2.5 1 1 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|529076662|ref|YP_008375665.1| - 0.058 12.7 0.4 0.15 11.4 0.0 2.0 2 1 0 2 2 2 0 AAA domain AAA_26 PF13500.1 gi|529076662|ref|YP_008375665.1| - 0.093 12.3 1.7 5.7 6.4 0.1 2.2 2 1 0 2 2 2 0 AAA domain SKI PF01202.17 gi|529076662|ref|YP_008375665.1| - 0.1 12.4 0.3 0.29 10.9 0.0 1.9 2 1 0 2 2 2 0 Shikimate kinase CARDB PF07705.6 gi|529076664|ref|YP_008375667.1| - 1.2e-06 28.4 18.8 1.8e-05 24.6 0.1 4.5 3 1 2 5 5 5 3 CARDB A2M PF00207.17 gi|529076664|ref|YP_008375667.1| - 0.0002 20.8 1.7 0.063 12.8 0.0 3.6 3 1 0 3 3 3 1 Alpha-2-macroglobulin family PEGA PF08308.6 gi|529076664|ref|YP_008375667.1| - 0.00099 18.8 12.0 0.047 13.4 0.0 5.7 5 1 1 6 6 6 1 PEGA domain DUF11 PF01345.13 gi|529076664|ref|YP_008375667.1| - 0.003 17.5 3.8 0.003 17.5 2.6 5.4 4 1 2 6 6 6 1 Domain of unknown function DUF11 CBM_4_9 PF02018.12 gi|529076664|ref|YP_008375667.1| - 0.012 15.6 8.7 0.1 12.6 0.1 3.6 2 1 1 3 3 3 0 Carbohydrate binding domain DUF3426 PF11906.3 gi|529076664|ref|YP_008375667.1| - 0.022 14.4 1.7 11 5.6 0.0 3.8 4 0 0 4 4 4 0 Protein of unknown function (DUF3426) Big_3 PF07523.7 gi|529076664|ref|YP_008375667.1| - 0.17 12.0 20.4 0.46 10.5 0.2 4.7 3 1 1 4 4 4 0 Bacterial Ig-like domain (group 3) NPCBM_assoc PF10633.4 gi|529076664|ref|YP_008375667.1| - 0.32 11.0 28.1 0.17 11.9 0.5 7.0 4 3 2 6 6 6 0 NPCBM-associated, NEW3 domain of alpha-galactosidase YtkA PF13115.1 gi|529076665|ref|YP_008375668.1| - 0.019 15.3 0.3 0.035 14.4 0.2 1.5 1 0 0 1 1 1 0 YtkA-like MacB_PCD PF12704.2 gi|529076665|ref|YP_008375668.1| - 0.088 12.3 0.5 0.12 12.0 0.3 1.3 1 1 0 1 1 1 0 MacB-like periplasmic core domain AAA_10 PF12846.2 gi|529076666|ref|YP_008375669.1| - 4.4e-10 39.4 0.0 0.00033 20.1 0.0 2.2 1 1 0 2 2 2 2 AAA-like domain DUF87 PF01935.12 gi|529076666|ref|YP_008375669.1| - 0.00014 21.7 0.0 0.00046 20.0 0.0 1.7 1 1 0 2 2 2 1 Domain of unknown function DUF87 DUF853 PF05872.7 gi|529076666|ref|YP_008375669.1| - 0.00014 20.3 0.1 0.02 13.2 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.13 gi|529076666|ref|YP_008375669.1| - 0.00017 21.1 0.0 0.016 14.6 0.0 2.3 2 0 0 2 2 2 2 FtsK/SpoIIIE family AAA_22 PF13401.1 gi|529076666|ref|YP_008375669.1| - 0.0089 16.1 0.0 6.9 6.8 0.0 3.0 2 1 1 3 3 3 2 AAA domain T2SE PF00437.15 gi|529076668|ref|YP_008375671.1| - 6.3e-38 130.2 0.8 1e-37 129.5 0.0 1.6 2 0 0 2 2 2 1 Type II/IV secretion system protein FtsK_SpoIIIE PF01580.13 gi|529076668|ref|YP_008375671.1| - 0.00062 19.3 0.1 0.008 15.6 0.0 2.3 2 0 0 2 2 2 1 FtsK/SpoIIIE family ABC_tran PF00005.22 gi|529076668|ref|YP_008375671.1| - 0.00063 20.0 0.0 0.0011 19.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TrwB_AAD_bind PF10412.4 gi|529076668|ref|YP_008375671.1| - 0.0044 15.6 0.0 0.0066 15.1 0.0 1.2 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain cobW PF02492.14 gi|529076668|ref|YP_008375671.1| - 0.0053 16.2 0.0 0.011 15.1 0.0 1.5 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.7 gi|529076668|ref|YP_008375671.1| - 0.013 14.5 0.0 0.03 13.4 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_16 PF13191.1 gi|529076668|ref|YP_008375671.1| - 0.017 15.0 0.5 0.097 12.6 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain AAA_29 PF13555.1 gi|529076668|ref|YP_008375671.1| - 0.023 14.2 0.2 0.053 13.0 0.2 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|529076668|ref|YP_008375671.1| - 0.03 14.2 0.0 0.055 13.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|529076668|ref|YP_008375671.1| - 0.063 12.9 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_24 PF13479.1 gi|529076668|ref|YP_008375671.1| - 0.077 12.5 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain KaiC PF06745.8 gi|529076668|ref|YP_008375671.1| - 0.086 11.9 0.0 0.15 11.1 0.0 1.3 1 0 0 1 1 1 0 KaiC AAA_22 PF13401.1 gi|529076668|ref|YP_008375671.1| - 0.1 12.7 0.0 0.24 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|529076668|ref|YP_008375671.1| - 0.1 12.0 0.0 0.18 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain T2SF PF00482.18 gi|529076669|ref|YP_008375672.1| - 0.00016 21.5 0.7 0.0015 18.4 0.0 2.5 2 1 0 2 2 2 1 Type II secretion system (T2SS), protein F TFR_dimer PF04253.10 gi|529076669|ref|YP_008375672.1| - 0.19 11.2 0.0 0.38 10.3 0.0 1.4 1 0 0 1 1 1 0 Transferrin receptor-like dimerisation domain TSGP1 PF07771.6 gi|529076672|ref|YP_008375675.1| - 0.022 14.6 0.4 0.052 13.4 0.3 1.5 1 0 0 1 1 1 0 Tick salivary peptide group 1 BLOC1_2 PF10046.4 gi|529076674|ref|YP_008375677.1| - 3.2e-05 23.9 0.5 0.00063 19.8 0.1 2.3 1 1 1 2 2 2 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF745 PF05335.8 gi|529076674|ref|YP_008375677.1| - 4.3e-05 23.1 1.1 6e-05 22.6 0.8 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF745) Reo_sigmaC PF04582.7 gi|529076674|ref|YP_008375677.1| - 4.5e-05 22.7 0.5 6e-05 22.3 0.3 1.1 1 0 0 1 1 1 1 Reovirus sigma C capsid protein IncA PF04156.9 gi|529076674|ref|YP_008375677.1| - 0.00068 19.2 0.9 0.00099 18.7 0.6 1.3 1 1 0 1 1 1 1 IncA protein NPV_P10 PF05531.7 gi|529076674|ref|YP_008375677.1| - 0.00074 19.7 1.7 0.052 13.8 0.1 2.5 1 1 1 2 2 2 1 Nucleopolyhedrovirus P10 protein Tropomyosin PF00261.15 gi|529076674|ref|YP_008375677.1| - 0.0012 18.0 4.1 0.0025 16.9 2.8 1.6 1 1 0 1 1 1 1 Tropomyosin DUF16 PF01519.11 gi|529076674|ref|YP_008375677.1| - 0.0044 17.2 0.1 0.0065 16.6 0.1 1.3 1 1 0 1 1 1 1 Protein of unknown function DUF16 SlyX PF04102.7 gi|529076674|ref|YP_008375677.1| - 0.007 16.7 1.1 0.007 16.7 0.8 2.8 2 1 0 2 2 2 1 SlyX DUF1664 PF07889.7 gi|529076674|ref|YP_008375677.1| - 0.01 15.6 0.1 0.017 14.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Fmp27_WPPW PF10359.4 gi|529076674|ref|YP_008375677.1| - 0.01 14.2 0.3 0.012 14.0 0.2 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Laminin_II PF06009.7 gi|529076674|ref|YP_008375677.1| - 0.012 15.3 0.0 0.02 14.6 0.0 1.3 1 0 0 1 1 1 0 Laminin Domain II DUF3540 PF12059.3 gi|529076674|ref|YP_008375677.1| - 0.034 13.8 0.3 0.042 13.4 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3540) Rab5-bind PF09311.6 gi|529076674|ref|YP_008375677.1| - 0.037 13.9 2.3 0.048 13.5 1.3 1.4 1 1 0 1 1 1 0 Rabaptin-like protein Dynamitin PF04912.9 gi|529076674|ref|YP_008375677.1| - 0.038 12.7 4.6 0.086 11.6 0.4 2.1 1 1 1 2 2 2 0 Dynamitin Laminin_I PF06008.9 gi|529076674|ref|YP_008375677.1| - 0.046 13.0 0.7 0.064 12.5 0.5 1.2 1 0 0 1 1 1 0 Laminin Domain I DUF2408 PF10303.4 gi|529076674|ref|YP_008375677.1| - 0.049 13.7 0.3 0.57 10.3 0.1 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2408) DUF3584 PF12128.3 gi|529076674|ref|YP_008375677.1| - 0.058 10.7 3.4 0.067 10.5 2.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Prefoldin_2 PF01920.15 gi|529076674|ref|YP_008375677.1| - 0.067 12.9 2.6 4.2 7.1 0.1 2.6 2 1 1 3 3 3 0 Prefoldin subunit Fib_alpha PF08702.5 gi|529076674|ref|YP_008375677.1| - 0.083 13.0 0.1 0.2 11.7 0.0 1.6 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family HWE_HK PF07536.9 gi|529076674|ref|YP_008375677.1| - 0.086 13.2 1.4 1.5 9.3 0.0 2.8 2 1 1 3 3 3 0 HWE histidine kinase THOC7 PF05615.8 gi|529076674|ref|YP_008375677.1| - 0.087 13.0 0.5 0.13 12.5 0.4 1.3 1 0 0 1 1 1 0 Tho complex subunit 7 V_ATPase_I PF01496.14 gi|529076674|ref|YP_008375677.1| - 0.094 10.5 0.5 0.1 10.4 0.4 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family COG2 PF06148.6 gi|529076674|ref|YP_008375677.1| - 0.094 12.5 0.3 0.18 11.6 0.2 1.4 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF2360 PF10152.4 gi|529076674|ref|YP_008375677.1| - 0.1 12.9 10.7 0.021 15.1 4.9 1.7 2 1 0 2 2 1 0 Predicted coiled-coil domain-containing protein (DUF2360) Nsp1_C PF05064.8 gi|529076674|ref|YP_008375677.1| - 0.12 12.0 0.4 3 7.5 0.0 2.3 1 1 1 2 2 2 0 Nsp1-like C-terminal region Baculo_PEP_C PF04513.7 gi|529076674|ref|YP_008375677.1| - 0.14 11.9 1.2 0.15 11.9 0.1 1.5 2 0 0 2 2 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus AATF-Che1 PF13339.1 gi|529076674|ref|YP_008375677.1| - 0.14 12.3 0.6 0.59 10.2 0.3 1.9 1 1 0 1 1 1 0 Apoptosis antagonizing transcription factor FlaC_arch PF05377.6 gi|529076674|ref|YP_008375677.1| - 0.17 11.8 0.4 1.3 8.9 0.0 2.4 3 0 0 3 3 3 0 Flagella accessory protein C (FlaC) DUF3782 PF12644.2 gi|529076674|ref|YP_008375677.1| - 0.17 11.7 1.1 0.28 11.0 0.3 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3782) DUF1515 PF07439.6 gi|529076674|ref|YP_008375677.1| - 0.17 11.6 1.1 0.34 10.7 0.6 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1515) TPR_10 PF13374.1 gi|529076674|ref|YP_008375677.1| - 0.25 11.3 1.8 0.29 11.1 0.2 1.9 2 0 0 2 2 1 0 Tetratricopeptide repeat BMFP PF04380.8 gi|529076674|ref|YP_008375677.1| - 0.29 11.3 8.9 0.81 9.8 0.2 3.2 3 0 0 3 3 3 0 Membrane fusogenic activity Tropomyosin_1 PF12718.2 gi|529076674|ref|YP_008375677.1| - 0.38 10.5 4.1 0.67 9.7 2.8 1.4 1 0 0 1 1 1 0 Tropomyosin like MerR-DNA-bind PF09278.6 gi|529076674|ref|YP_008375677.1| - 0.9 9.9 10.2 0.93 9.9 0.3 2.9 1 1 2 3 3 3 0 MerR, DNA binding GvpK PF05121.7 gi|529076674|ref|YP_008375677.1| - 1 9.2 4.0 0.97 9.2 0.9 2.0 2 0 0 2 2 2 0 Gas vesicle protein K FUSC PF04632.7 gi|529076674|ref|YP_008375677.1| - 1.1 7.6 5.7 1.3 7.4 3.9 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF4407 PF14362.1 gi|529076674|ref|YP_008375677.1| - 1.9 7.4 6.1 4 6.2 4.2 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) Sugarporin_N PF11471.3 gi|529076674|ref|YP_008375677.1| - 1.9 8.1 11.9 5.6 6.6 0.4 3.2 2 1 1 3 3 3 0 Maltoporin periplasmic N-terminal extension PspB PF06667.7 gi|529076674|ref|YP_008375677.1| - 2.9 7.8 8.2 6.5 6.7 0.2 3.1 1 1 2 3 3 3 0 Phage shock protein B DUF1405 PF07187.6 gi|529076675|ref|YP_008375678.1| - 1.1e-50 171.5 14.9 1.4e-50 171.1 10.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1405) Iron_permease PF04120.7 gi|529076675|ref|YP_008375678.1| - 0.2 11.2 0.6 0.37 10.3 0.4 1.4 1 0 0 1 1 1 0 Low affinity iron permease OrfB_Zn_ribbon PF07282.6 gi|529076676|ref|YP_008375679.1| - 0.0017 17.9 1.1 0.0028 17.2 0.8 1.3 1 1 0 1 1 1 1 Putative transposase DNA-binding domain Prim_Zn_Ribbon PF08273.7 gi|529076676|ref|YP_008375679.1| - 0.0055 16.7 9.4 0.36 10.9 6.9 2.1 1 1 1 2 2 2 1 Zinc-binding domain of primase-helicase DZR PF12773.2 gi|529076676|ref|YP_008375679.1| - 0.0081 15.9 2.1 0.013 15.3 1.5 1.4 1 1 0 1 1 1 1 Double zinc ribbon DUF2387 PF09526.5 gi|529076676|ref|YP_008375679.1| - 0.012 15.5 0.7 0.016 15.0 0.5 1.3 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) FdhE PF04216.7 gi|529076676|ref|YP_008375679.1| - 0.013 15.2 2.1 0.013 15.2 1.4 1.0 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation zf-ribbon_3 PF13248.1 gi|529076676|ref|YP_008375679.1| - 0.013 14.6 6.0 0.86 8.8 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|529076676|ref|YP_008375679.1| - 0.014 15.1 7.5 0.099 12.4 0.4 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Cys_rich_KTR PF14205.1 gi|529076676|ref|YP_008375679.1| - 0.016 14.6 2.0 0.47 9.9 0.1 2.0 2 0 0 2 2 2 0 Cysteine-rich KTR UPF0547 PF10571.4 gi|529076676|ref|YP_008375679.1| - 0.017 14.8 11.3 0.037 13.7 0.7 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-tcix PF14952.1 gi|529076676|ref|YP_008375679.1| - 0.018 14.3 2.5 0.84 9.0 0.2 2.1 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Zn-ribbon_8 PF09723.5 gi|529076676|ref|YP_008375679.1| - 0.021 14.7 5.5 0.29 11.1 0.4 2.1 2 0 0 2 2 2 0 Zinc ribbon domain Ogr_Delta PF04606.7 gi|529076676|ref|YP_008375679.1| - 0.022 14.3 1.2 0.059 13.0 0.8 1.7 1 1 0 1 1 1 0 Ogr/Delta-like zinc finger Zn_Tnp_IS1595 PF12760.2 gi|529076676|ref|YP_008375679.1| - 0.023 14.5 5.8 0.097 12.4 4.1 1.8 1 1 0 1 1 1 0 Transposase zinc-ribbon domain DUF3797 PF12677.2 gi|529076676|ref|YP_008375679.1| - 0.033 13.8 1.3 2.7 7.6 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3797) CpXC PF14353.1 gi|529076676|ref|YP_008375679.1| - 0.062 13.2 1.1 5.1 7.0 0.0 2.0 2 0 0 2 2 2 0 CpXC protein zf-ISL3 PF14690.1 gi|529076676|ref|YP_008375679.1| - 0.068 13.2 3.5 0.85 9.7 0.3 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-IS66 PF13005.2 gi|529076676|ref|YP_008375679.1| - 0.068 13.1 4.5 0.42 10.6 0.7 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 RNA_POL_M_15KD PF02150.11 gi|529076676|ref|YP_008375679.1| - 0.075 12.7 4.7 0.61 9.8 0.0 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zinc_ribbon_2 PF13240.1 gi|529076676|ref|YP_008375679.1| - 0.076 12.5 6.9 1.3 8.6 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain TniQ PF06527.6 gi|529076676|ref|YP_008375679.1| - 0.14 12.3 0.8 0.16 12.2 0.5 1.2 1 0 0 1 1 1 0 TniQ TFIIS_C PF01096.13 gi|529076676|ref|YP_008375679.1| - 0.15 11.6 0.7 0.15 11.6 0.5 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-H2C2_2 PF13465.1 gi|529076676|ref|YP_008375679.1| - 0.22 11.9 5.7 1.1 9.6 0.2 2.1 2 0 0 2 2 2 0 Zinc-finger double domain DNA_ligase_ZBD PF03119.11 gi|529076676|ref|YP_008375679.1| - 0.29 10.8 10.4 1.7 8.3 1.6 2.8 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain Zn_Tnp_IS1 PF03811.8 gi|529076676|ref|YP_008375679.1| - 0.36 10.3 2.9 2.4 7.7 0.2 2.2 2 0 0 2 2 2 0 InsA N-terminal domain TF_Zn_Ribbon PF08271.7 gi|529076676|ref|YP_008375679.1| - 0.4 10.0 7.1 14 5.1 4.9 2.3 1 1 0 1 1 1 0 TFIIB zinc-binding zf-C4_Topoisom PF01396.14 gi|529076676|ref|YP_008375679.1| - 0.55 9.7 6.1 4.5 6.8 0.9 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Sgf11 PF08209.6 gi|529076676|ref|YP_008375679.1| - 0.67 9.3 4.8 1.2 8.5 0.1 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Nudix_N_2 PF14803.1 gi|529076676|ref|YP_008375679.1| - 0.76 9.5 5.6 3.8 7.2 3.9 2.0 1 1 0 1 1 1 0 Nudix N-terminal Lar_restr_allev PF14354.1 gi|529076676|ref|YP_008375679.1| - 0.9 9.8 5.2 1.5 9.1 3.6 1.4 1 1 0 1 1 1 0 Restriction alleviation protein Lar HypA PF01155.14 gi|529076676|ref|YP_008375679.1| - 1.2 8.8 3.1 8.6 6.0 0.3 2.0 1 1 0 2 2 2 0 Hydrogenase expression/synthesis hypA family Rubredoxin PF00301.15 gi|529076676|ref|YP_008375679.1| - 2 8.3 9.9 22 5.0 1.0 2.6 1 1 0 1 1 1 0 Rubredoxin zinc_ribbon_5 PF13719.1 gi|529076676|ref|YP_008375679.1| - 2.5 7.7 5.0 33 4.1 3.5 2.3 1 1 0 1 1 1 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|529076676|ref|YP_008375679.1| - 4.9 6.7 7.0 8.6 5.9 0.3 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain MutL_C PF08676.6 gi|529076677|ref|YP_008375680.1| - 5.6e-37 126.5 0.0 8.2e-37 125.9 0.0 1.3 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.14 gi|529076677|ref|YP_008375680.1| - 5.6e-33 112.9 0.0 8.3e-33 112.3 0.0 1.3 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.1 gi|529076677|ref|YP_008375680.1| - 3.2e-11 43.0 0.1 5.8e-11 42.1 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.21 gi|529076677|ref|YP_008375680.1| - 1.2e-09 37.9 0.4 5.9e-09 35.6 0.2 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PfkB PF00294.19 gi|529076678|ref|YP_008375681.1| - 2.8e-32 112.0 0.0 3.4e-32 111.7 0.0 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase FAD_binding_3 PF01494.14 gi|529076679|ref|YP_008375682.1| - 7e-14 51.6 1.9 1.2e-07 31.1 0.0 3.1 3 0 0 3 3 3 3 FAD binding domain DAO PF01266.19 gi|529076679|ref|YP_008375682.1| - 3.7e-11 42.5 5.6 1.8e-05 23.8 0.2 2.4 1 1 1 2 2 2 2 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|529076679|ref|YP_008375682.1| - 1.1e-07 31.1 3.2 0.0088 15.0 0.0 2.9 2 1 0 2 2 2 2 Lycopene cyclase protein Pyr_redox_2 PF07992.9 gi|529076679|ref|YP_008375682.1| - 4.7e-07 29.8 0.1 1.2e-06 28.5 0.0 1.6 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|529076679|ref|YP_008375682.1| - 1.3e-06 27.8 0.2 2.1e-06 27.1 0.2 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|529076679|ref|YP_008375682.1| - 1.5e-05 23.7 0.0 4.3e-05 22.1 0.0 1.7 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.19 gi|529076679|ref|YP_008375682.1| - 4.4e-05 22.5 1.4 0.00013 20.9 0.4 1.9 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.1 gi|529076679|ref|YP_008375682.1| - 0.00032 20.6 0.1 0.0013 18.6 0.0 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|529076679|ref|YP_008375682.1| - 0.0044 16.1 0.7 0.0063 15.6 0.0 1.5 2 0 0 2 2 2 1 Thi4 family GIDA PF01134.17 gi|529076679|ref|YP_008375682.1| - 0.0052 15.6 0.2 0.0073 15.2 0.1 1.1 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|529076679|ref|YP_008375682.1| - 0.0076 16.3 0.0 0.015 15.3 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|529076679|ref|YP_008375682.1| - 0.029 12.9 0.4 1.6 7.2 0.1 2.4 3 0 0 3 3 3 0 Tryptophan halogenase Pyr_redox PF00070.22 gi|529076679|ref|YP_008375682.1| - 0.12 12.8 1.2 14 6.1 0.2 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase DUF3040 PF11239.3 gi|529076680|ref|YP_008375683.1| - 6.4 6.8 8.2 9.1 6.4 5.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) FaeA PF04703.7 gi|529076681|ref|YP_008375684.1| - 0.0012 18.9 0.1 0.0015 18.6 0.0 1.1 1 0 0 1 1 1 1 FaeA-like protein HTH_24 PF13412.1 gi|529076681|ref|YP_008375684.1| - 0.011 15.1 0.6 0.045 13.1 0.1 2.2 2 1 0 2 2 2 0 Winged helix-turn-helix DNA-binding Myb_DNA-bind_6 PF13921.1 gi|529076681|ref|YP_008375684.1| - 0.014 15.5 0.1 0.016 15.2 0.1 1.2 1 0 0 1 1 1 0 Myb-like DNA-binding domain LexA_DNA_bind PF01726.11 gi|529076681|ref|YP_008375684.1| - 0.13 11.8 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 LexA DNA binding domain Polyketide_cyc2 PF10604.4 gi|529076682|ref|YP_008375685.1| - 2.5e-17 63.3 1.2 3e-17 63.1 0.8 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport COXG PF06240.8 gi|529076682|ref|YP_008375685.1| - 6.3e-06 25.9 0.0 3.9e-05 23.3 0.0 1.8 1 1 1 2 2 2 1 Carbon monoxide dehydrogenase subunit G (CoxG) AHSA1 PF08327.6 gi|529076682|ref|YP_008375685.1| - 0.00019 21.5 0.8 0.0033 17.5 0.5 2.1 1 1 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein Polyketide_cyc PF03364.15 gi|529076682|ref|YP_008375685.1| - 0.0012 18.8 0.4 0.0018 18.2 0.3 1.4 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport DUF2505 PF10698.4 gi|529076682|ref|YP_008375685.1| - 0.0013 18.2 0.5 0.094 12.2 0.0 2.3 1 1 0 2 2 2 2 Protein of unknown function (DUF2505) AAA PF00004.24 gi|529076683|ref|YP_008375686.1| - 3.1e-93 308.9 0.0 7.4e-47 158.8 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|529076683|ref|YP_008375686.1| - 1.1e-18 66.8 0.4 6.9e-18 64.3 0.2 2.4 3 0 0 3 3 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|529076683|ref|YP_008375686.1| - 6.5e-16 58.0 0.0 1.7e-07 30.5 0.0 3.1 3 0 0 3 3 3 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|529076683|ref|YP_008375686.1| - 1.5e-14 54.4 2.9 8.6e-06 25.8 0.0 3.9 2 2 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|529076683|ref|YP_008375686.1| - 1.1e-13 51.4 1.2 5.8e-05 23.2 0.1 4.1 2 2 0 2 2 2 2 AAA domain AAA_2 PF07724.9 gi|529076683|ref|YP_008375686.1| - 1.7e-12 47.6 0.0 3.3e-06 27.1 0.0 2.4 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_33 PF13671.1 gi|529076683|ref|YP_008375686.1| - 1.7e-12 47.4 0.0 6.5e-05 22.8 0.0 3.0 2 1 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|529076683|ref|YP_008375686.1| - 1.8e-12 48.1 0.3 0.00049 20.9 0.0 3.7 2 1 1 3 3 3 2 AAA domain AAA_5 PF07728.9 gi|529076683|ref|YP_008375686.1| - 2.4e-11 43.5 1.0 8.6e-05 22.2 0.1 4.1 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|529076683|ref|YP_008375686.1| - 1.6e-09 37.7 0.0 0.00061 19.7 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|529076683|ref|YP_008375686.1| - 1.6e-09 37.3 1.6 0.0028 17.3 0.0 3.9 2 1 1 3 3 3 2 Part of AAA domain TIP49 PF06068.8 gi|529076683|ref|YP_008375686.1| - 7.1e-09 34.8 0.0 0.0005 18.9 0.0 2.3 2 0 0 2 2 2 2 TIP49 C-terminus AAA_28 PF13521.1 gi|529076683|ref|YP_008375686.1| - 1.2e-08 35.1 0.6 0.0029 17.5 0.0 3.6 3 2 1 4 4 4 2 AAA domain Zeta_toxin PF06414.7 gi|529076683|ref|YP_008375686.1| - 1.3e-08 34.2 0.0 0.00062 18.9 0.0 3.0 3 0 0 3 3 3 2 Zeta toxin AAA_18 PF13238.1 gi|529076683|ref|YP_008375686.1| - 1.5e-08 35.0 0.0 0.0078 16.5 0.0 2.8 2 1 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|529076683|ref|YP_008375686.1| - 2.3e-08 33.6 0.0 0.0035 16.7 0.0 2.5 2 1 0 2 2 2 2 IstB-like ATP binding protein AAA_25 PF13481.1 gi|529076683|ref|YP_008375686.1| - 4.6e-07 29.4 6.3 0.013 14.8 0.2 3.9 2 2 1 3 3 3 3 AAA domain Mg_chelatase PF01078.16 gi|529076683|ref|YP_008375686.1| - 5.4e-07 28.9 0.1 0.028 13.5 0.1 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_3 PF07726.6 gi|529076683|ref|YP_008375686.1| - 8.4e-07 28.6 0.0 0.021 14.4 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.17 gi|529076683|ref|YP_008375686.1| - 8.8e-07 29.0 0.0 0.031 14.4 0.0 2.4 2 0 0 2 2 2 2 RNA helicase AAA_24 PF13479.1 gi|529076683|ref|YP_008375686.1| - 2e-06 27.5 0.0 0.029 13.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain Sigma54_activ_2 PF14532.1 gi|529076683|ref|YP_008375686.1| - 3.3e-06 27.2 0.0 0.12 12.4 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain Arch_ATPase PF01637.13 gi|529076683|ref|YP_008375686.1| - 6.7e-06 25.9 0.0 0.099 12.3 0.0 2.8 2 1 0 2 2 2 2 Archaeal ATPase Sigma54_activat PF00158.21 gi|529076683|ref|YP_008375686.1| - 1e-05 25.0 0.0 0.46 9.9 0.0 3.6 4 0 0 4 4 4 2 Sigma-54 interaction domain ABC_tran PF00005.22 gi|529076683|ref|YP_008375686.1| - 1.2e-05 25.6 0.0 0.11 12.7 0.0 2.5 2 0 0 2 2 2 2 ABC transporter Parvo_NS1 PF01057.12 gi|529076683|ref|YP_008375686.1| - 1.2e-05 24.3 0.0 0.055 12.3 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 DUF815 PF05673.8 gi|529076683|ref|YP_008375686.1| - 1.6e-05 23.9 0.0 0.023 13.6 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF815) NACHT PF05729.7 gi|529076683|ref|YP_008375686.1| - 1.8e-05 24.4 0.7 1.1 8.8 0.0 4.1 4 0 0 4 4 4 1 NACHT domain PhoH PF02562.11 gi|529076683|ref|YP_008375686.1| - 6.4e-05 22.2 0.2 0.4 9.8 0.0 2.6 3 0 0 3 3 2 2 PhoH-like protein KaiC PF06745.8 gi|529076683|ref|YP_008375686.1| - 0.00011 21.4 0.5 0.83 8.7 0.0 3.6 3 1 1 4 4 4 2 KaiC DUF2075 PF09848.4 gi|529076683|ref|YP_008375686.1| - 0.00018 20.6 0.0 0.23 10.4 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_11 PF13086.1 gi|529076683|ref|YP_008375686.1| - 0.00052 19.6 0.0 0.77 9.2 0.0 2.3 2 0 0 2 2 2 2 AAA domain UPF0079 PF02367.12 gi|529076683|ref|YP_008375686.1| - 0.0006 19.4 0.0 0.92 9.1 0.0 2.3 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 NB-ARC PF00931.17 gi|529076683|ref|YP_008375686.1| - 0.00065 18.6 0.0 0.15 10.8 0.0 2.2 2 0 0 2 2 2 1 NB-ARC domain CDC48_2 PF02933.12 gi|529076683|ref|YP_008375686.1| - 0.00072 19.1 0.4 0.0022 17.6 0.3 1.9 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_30 PF13604.1 gi|529076683|ref|YP_008375686.1| - 0.0011 18.5 0.6 2 7.9 0.1 3.6 2 1 0 2 2 2 1 AAA domain Cytidylate_kin2 PF13189.1 gi|529076683|ref|YP_008375686.1| - 0.01 15.7 0.0 1.3 8.9 0.0 2.3 2 0 0 2 2 2 0 Cytidylate kinase-like family SKI PF01202.17 gi|529076683|ref|YP_008375686.1| - 0.026 14.3 0.0 10 5.9 0.0 2.6 2 0 0 2 2 2 0 Shikimate kinase DEAD PF00270.24 gi|529076683|ref|YP_008375686.1| - 0.031 13.7 1.2 18 4.7 0.0 3.7 3 1 1 4 4 4 0 DEAD/DEAH box helicase NTPase_1 PF03266.10 gi|529076683|ref|YP_008375686.1| - 0.046 13.4 0.2 21 4.7 0.0 3.5 2 2 2 4 4 4 0 NTPase MMR_HSR1 PF01926.18 gi|529076683|ref|YP_008375686.1| - 0.06 13.3 0.0 11 6.0 0.0 2.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase ResIII PF04851.10 gi|529076683|ref|YP_008375686.1| - 0.075 12.8 0.0 13 5.5 0.0 2.3 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_23 PF13476.1 gi|529076683|ref|YP_008375686.1| - 0.09 13.0 0.0 19 5.4 0.0 2.6 2 0 0 2 2 2 0 AAA domain KTI12 PF08433.5 gi|529076683|ref|YP_008375686.1| - 0.097 11.8 0.0 14 4.8 0.0 2.3 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Bac_DnaA PF00308.13 gi|529076683|ref|YP_008375686.1| - 0.11 12.0 0.0 7 6.2 0.0 2.4 2 0 0 2 2 2 0 Bacterial dnaA protein AAA_21 PF13304.1 gi|529076683|ref|YP_008375686.1| - 0.23 11.4 0.0 13 5.6 0.0 2.9 2 1 1 3 3 3 0 AAA domain zf-C2H2_4 PF13894.1 gi|529076684|ref|YP_008375687.1| - 0.024 14.9 0.0 0.031 14.5 0.0 1.2 1 0 0 1 1 1 0 C2H2-type zinc finger Zn_ribbon_2 PF12674.2 gi|529076684|ref|YP_008375687.1| - 0.032 14.5 0.2 0.036 14.3 0.2 1.1 1 0 0 1 1 1 0 Putative zinc ribbon domain Rubredoxin PF00301.15 gi|529076684|ref|YP_008375687.1| - 0.056 13.3 0.5 0.073 12.9 0.4 1.3 1 1 0 1 1 1 0 Rubredoxin RRN7 PF11781.3 gi|529076684|ref|YP_008375687.1| - 0.073 12.5 0.6 0.12 11.9 0.1 1.6 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-C2H2 PF00096.21 gi|529076684|ref|YP_008375687.1| - 0.079 13.3 0.1 0.11 12.9 0.1 1.3 1 0 0 1 1 1 0 Zinc finger, C2H2 type zf-C2H2_3 PF13878.1 gi|529076684|ref|YP_008375687.1| - 0.4 10.2 2.0 0.58 9.7 1.4 1.4 1 1 0 1 1 1 0 zinc-finger of acetyl-transferase ESCO GHMP_kinases_N PF00288.21 gi|529076685|ref|YP_008375688.1| - 1.8e-09 37.5 4.6 5e-09 36.0 3.2 1.8 1 0 0 1 1 1 1 GHMP kinases N terminal domain CM_2 PF01817.16 gi|529076686|ref|YP_008375689.1| - 2.6e-17 62.6 5.9 2.9e-17 62.5 4.1 1.0 1 0 0 1 1 1 1 Chorismate mutase type II DUF4404 PF14357.1 gi|529076686|ref|YP_008375689.1| - 0.09 13.2 1.3 0.11 12.9 0.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4404) Response_reg PF00072.19 gi|529076687|ref|YP_008375690.1| - 1.3e-13 50.9 0.1 1.6e-13 50.6 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain OKR_DC_1_N PF03709.10 gi|529076687|ref|YP_008375690.1| - 0.001 19.1 0.1 0.0024 17.9 0.0 1.6 1 1 1 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain HHH_8 PF14716.1 gi|529076687|ref|YP_008375690.1| - 0.021 14.9 0.0 0.038 14.1 0.0 1.4 1 0 0 1 1 1 0 Helix-hairpin-helix domain DUF908 PF06012.7 gi|529076687|ref|YP_008375690.1| - 0.17 11.1 0.0 0.22 10.8 0.0 1.1 1 0 0 1 1 1 0 Domain of Unknown Function (DUF908) zf-ribbon_3 PF13248.1 gi|529076688|ref|YP_008375691.1| - 0.00018 20.6 1.5 0.32 10.2 0.2 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|529076688|ref|YP_008375691.1| - 0.0013 18.1 0.9 0.97 9.0 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|529076688|ref|YP_008375691.1| - 0.0018 17.6 1.3 0.0027 17.1 0.1 1.8 2 0 0 2 2 2 1 DNA directed RNA polymerase, 7 kDa subunit UPF0547 PF10571.4 gi|529076688|ref|YP_008375691.1| - 0.0025 17.4 4.8 0.56 9.9 0.1 2.2 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 DZR PF12773.2 gi|529076688|ref|YP_008375691.1| - 0.0029 17.3 1.7 0.0085 15.8 1.2 1.7 1 1 0 1 1 1 1 Double zinc ribbon Zn_Tnp_IS1595 PF12760.2 gi|529076688|ref|YP_008375691.1| - 0.0041 16.9 2.4 0.0056 16.4 1.6 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Rubredoxin PF00301.15 gi|529076688|ref|YP_008375691.1| - 0.0043 16.8 1.1 0.15 11.9 0.1 2.2 2 0 0 2 2 2 1 Rubredoxin TF_Zn_Ribbon PF08271.7 gi|529076688|ref|YP_008375691.1| - 0.0068 15.6 1.1 1.3 8.4 0.1 2.2 2 0 0 2 2 2 1 TFIIB zinc-binding zf-RING_4 PF14570.1 gi|529076688|ref|YP_008375691.1| - 0.014 14.9 1.4 0.8 9.3 0.2 2.2 2 0 0 2 2 2 0 RING/Ubox like zinc-binding domain DNA_ligase_ZBD PF03119.11 gi|529076688|ref|YP_008375691.1| - 0.015 15.0 2.4 0.12 12.1 0.1 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-ISL3 PF14690.1 gi|529076688|ref|YP_008375691.1| - 0.018 15.0 3.9 0.8 9.7 0.2 2.1 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Lar_restr_allev PF14354.1 gi|529076688|ref|YP_008375691.1| - 0.019 15.2 0.3 0.021 15.1 0.2 1.1 1 0 0 1 1 1 0 Restriction alleviation protein Lar DUF2296 PF10058.4 gi|529076688|ref|YP_008375691.1| - 0.024 14.3 3.5 0.16 11.7 2.4 2.0 1 1 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) zf-Mss51 PF13824.1 gi|529076688|ref|YP_008375691.1| - 0.03 14.1 0.1 0.04 13.7 0.1 1.2 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 HypA PF01155.14 gi|529076688|ref|YP_008375691.1| - 0.031 13.9 0.3 0.034 13.8 0.2 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family RRN7 PF11781.3 gi|529076688|ref|YP_008375691.1| - 0.035 13.6 1.7 0.82 9.2 0.2 2.1 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-C4_Topoisom PF01396.14 gi|529076688|ref|YP_008375691.1| - 0.047 13.1 1.0 3 7.4 0.0 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Zn_Tnp_IS1 PF03811.8 gi|529076688|ref|YP_008375691.1| - 0.054 13.0 0.5 9.8 5.7 0.1 2.2 2 0 0 2 2 2 0 InsA N-terminal domain zf-IS66 PF13005.2 gi|529076688|ref|YP_008375691.1| - 0.061 13.2 0.2 8.5 6.4 0.0 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 DUF1272 PF06906.6 gi|529076688|ref|YP_008375691.1| - 0.068 13.0 0.2 10 6.0 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) zf-DNA_Pol PF08996.5 gi|529076688|ref|YP_008375691.1| - 0.07 12.4 0.2 0.075 12.3 0.1 1.0 1 0 0 1 1 1 0 DNA Polymerase alpha zinc finger Thioredoxin_3 PF13192.1 gi|529076688|ref|YP_008375691.1| - 0.074 12.8 0.3 0.24 11.2 0.0 1.7 1 1 1 2 2 2 0 Thioredoxin domain IBR PF01485.16 gi|529076688|ref|YP_008375691.1| - 0.082 12.7 0.7 0.11 12.3 0.5 1.2 1 0 0 1 1 1 0 IBR domain DUF35_N PF12172.3 gi|529076688|ref|YP_008375691.1| - 0.089 12.7 2.4 5.6 7.0 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Opy2 PF09463.5 gi|529076688|ref|YP_008375691.1| - 0.089 12.9 0.6 3.3 7.8 0.0 2.1 2 0 0 2 2 2 0 Opy2 protein DnaJ_CXXCXGXG PF00684.14 gi|529076688|ref|YP_008375691.1| - 0.11 12.6 0.3 0.12 12.4 0.2 1.2 1 0 0 1 1 1 0 DnaJ central domain Terminase_GpA PF05876.7 gi|529076688|ref|YP_008375691.1| - 0.11 10.8 0.2 0.11 10.8 0.2 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) DUF1610 PF07754.6 gi|529076688|ref|YP_008375691.1| - 0.12 12.5 0.6 0.12 12.5 0.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) A2L_zn_ribbon PF08792.5 gi|529076688|ref|YP_008375691.1| - 0.12 11.8 0.9 7.5 6.1 0.0 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain DUF329 PF03884.9 gi|529076688|ref|YP_008375691.1| - 0.13 11.7 1.2 8.7 5.9 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF329) Auto_anti-p27 PF06677.7 gi|529076688|ref|YP_008375691.1| - 0.13 11.9 0.4 12 5.7 0.0 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-RING_3 PF14369.1 gi|529076688|ref|YP_008375691.1| - 0.15 12.0 2.8 5.1 7.1 0.2 2.2 1 1 1 2 2 2 0 zinc-finger CpXC PF14353.1 gi|529076688|ref|YP_008375691.1| - 0.17 11.8 1.2 2.7 7.9 0.8 2.0 1 1 0 1 1 1 0 CpXC protein zf-C2H2_4 PF13894.1 gi|529076688|ref|YP_008375691.1| - 0.18 12.2 0.9 4.4 7.8 0.0 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger zf-H2C2_2 PF13465.1 gi|529076688|ref|YP_008375691.1| - 0.18 12.1 0.7 8.8 6.8 0.0 2.1 2 0 0 2 2 2 0 Zinc-finger double domain DUF4379 PF14311.1 gi|529076688|ref|YP_008375691.1| - 0.2 11.5 5.3 0.86 9.4 3.6 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4379) Zn-ribbon_8 PF09723.5 gi|529076688|ref|YP_008375691.1| - 0.32 10.9 5.0 3.2 7.7 0.2 2.1 1 1 1 2 2 2 0 Zinc ribbon domain GFA PF04828.9 gi|529076688|ref|YP_008375691.1| - 0.33 10.9 1.9 1.3 9.0 0.1 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme OrfB_Zn_ribbon PF07282.6 gi|529076688|ref|YP_008375691.1| - 0.38 10.4 3.4 1.2 8.8 2.3 1.8 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-MIZ PF02891.15 gi|529076688|ref|YP_008375691.1| - 0.85 9.1 4.7 4.2 6.9 3.4 1.9 1 1 1 2 2 2 0 MIZ/SP-RING zinc finger zinc_ribbon_5 PF13719.1 gi|529076688|ref|YP_008375691.1| - 0.86 9.2 5.0 17 5.1 3.4 2.1 1 1 0 1 1 1 0 zinc-ribbon domain Ogr_Delta PF04606.7 gi|529076688|ref|YP_008375691.1| - 0.92 9.2 5.7 2.9 7.6 3.8 2.0 1 1 0 1 1 1 0 Ogr/Delta-like zinc finger TFIIS_C PF01096.13 gi|529076688|ref|YP_008375691.1| - 1.1 8.8 4.7 10 5.8 3.2 2.0 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) zinc_ribbon_4 PF13717.1 gi|529076688|ref|YP_008375691.1| - 1.2 8.9 5.1 29 4.4 3.5 2.2 1 1 0 1 1 1 0 zinc-ribbon domain PHD PF00628.24 gi|529076688|ref|YP_008375691.1| - 2.3 7.9 5.3 43 3.9 3.8 2.0 1 1 1 2 2 2 0 PHD-finger zf-NADH-PPase PF09297.6 gi|529076688|ref|YP_008375691.1| - 2.8 7.5 5.4 9.3 5.8 0.2 2.3 2 1 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Cob_adeno_trans PF01923.13 gi|529076689|ref|YP_008375692.1| - 1.5e-57 193.9 0.0 1.7e-57 193.7 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase Epimerase PF01370.16 gi|529076690|ref|YP_008375693.1| - 2.2e-43 148.3 0.0 2.6e-43 148.1 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|529076690|ref|YP_008375693.1| - 2e-15 56.4 0.0 2.6e-15 56.0 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|529076690|ref|YP_008375693.1| - 1e-10 41.9 0.0 1.4e-10 41.5 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|529076690|ref|YP_008375693.1| - 8e-10 38.0 0.0 5.4e-09 35.3 0.0 2.2 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.14 gi|529076690|ref|YP_008375693.1| - 8.9e-10 37.7 0.0 1.2e-09 37.2 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family TrkA_N PF02254.13 gi|529076690|ref|YP_008375693.1| - 1.4e-07 31.4 1.3 2.1e-07 30.9 0.3 1.7 2 0 0 2 2 2 1 TrkA-N domain NAD_binding_4 PF07993.7 gi|529076690|ref|YP_008375693.1| - 6.1e-06 25.3 0.0 0.00026 19.9 0.0 2.2 1 1 0 1 1 1 1 Male sterility protein adh_short PF00106.20 gi|529076690|ref|YP_008375693.1| - 0.00077 19.4 0.1 0.0015 18.4 0.1 1.6 1 0 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.8 gi|529076690|ref|YP_008375693.1| - 0.002 17.4 0.1 0.31 10.2 0.0 2.2 2 0 0 2 2 2 2 NmrA-like family DUF1188 PF06690.6 gi|529076690|ref|YP_008375693.1| - 0.056 12.5 0.1 0.13 11.3 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1188) GHMP_kinases_N PF00288.21 gi|529076691|ref|YP_008375694.1| - 1.7e-13 50.3 0.1 4.1e-13 49.1 0.1 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GalKase_gal_bdg PF10509.4 gi|529076691|ref|YP_008375694.1| - 1.9e-13 49.4 0.1 4.7e-13 48.1 0.1 1.7 1 0 0 1 1 1 1 Galactokinase galactose-binding signature GHMP_kinases_C PF08544.8 gi|529076691|ref|YP_008375694.1| - 2.3e-12 46.9 0.8 7.1e-12 45.3 0.3 2.1 2 0 0 2 2 2 1 GHMP kinases C terminal Usp PF00582.21 gi|529076692|ref|YP_008375695.1| - 2.4e-58 196.2 12.1 1.1e-30 106.7 0.6 2.1 2 0 0 2 2 2 2 Universal stress protein family Peptidase_M20 PF01546.23 gi|529076692|ref|YP_008375695.1| - 0.022 14.2 0.0 0.03 13.8 0.0 1.1 1 0 0 1 1 1 0 Peptidase family M20/M25/M40 MGS PF02142.17 gi|529076692|ref|YP_008375695.1| - 0.12 12.3 0.1 3.2 7.7 0.0 2.5 2 0 0 2 2 2 0 MGS-like domain Oxidored_FMN PF00724.15 gi|529076693|ref|YP_008375696.1| - 9.2e-75 251.7 0.0 1.1e-74 251.4 0.0 1.1 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family RNase_H PF00075.19 gi|529076694|ref|YP_008375697.1| - 0.00091 19.5 0.0 0.0011 19.3 0.0 1.2 1 0 0 1 1 1 1 RNase H COX15-CtaA PF02628.10 gi|529076695|ref|YP_008375698.1| - 3.6e-22 78.6 12.9 3.6e-22 78.6 9.0 2.1 1 1 0 2 2 2 1 Cytochrome oxidase assembly protein AAA PF00004.24 gi|529076696|ref|YP_008375699.1| - 1.2e-11 44.8 0.0 4.4e-11 43.1 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|529076696|ref|YP_008375699.1| - 2e-08 34.4 0.0 2.5e-06 27.6 0.0 3.2 2 1 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|529076696|ref|YP_008375699.1| - 1.5e-05 25.7 0.7 0.0001 23.0 0.5 2.3 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|529076696|ref|YP_008375699.1| - 1.6e-05 24.0 0.0 3.6e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_5 PF07728.9 gi|529076696|ref|YP_008375699.1| - 9.6e-05 22.1 0.0 0.00034 20.3 0.0 1.9 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|529076696|ref|YP_008375699.1| - 0.0001 22.3 1.7 0.047 13.6 0.0 3.6 3 1 1 4 4 3 1 AAA ATPase domain Zeta_toxin PF06414.7 gi|529076696|ref|YP_008375699.1| - 0.00023 20.3 0.0 0.00047 19.3 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin IstB_IS21 PF01695.12 gi|529076696|ref|YP_008375699.1| - 0.00082 18.8 0.0 0.002 17.5 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_2 PF07724.9 gi|529076696|ref|YP_008375699.1| - 0.0011 18.9 0.0 0.0055 16.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_14 PF13173.1 gi|529076696|ref|YP_008375699.1| - 0.0015 18.3 0.0 0.005 16.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.10 gi|529076696|ref|YP_008375699.1| - 0.0032 16.2 0.0 0.3 9.6 0.0 2.1 2 0 0 2 2 2 1 Rad17 cell cycle checkpoint protein AAA_18 PF13238.1 gi|529076696|ref|YP_008375699.1| - 0.0049 17.1 0.0 0.05 13.9 0.0 2.2 1 1 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|529076696|ref|YP_008375699.1| - 0.0068 15.8 0.1 0.3 10.4 0.0 2.9 1 1 1 2 2 2 1 AAA domain Bac_DnaA PF00308.13 gi|529076696|ref|YP_008375699.1| - 0.0083 15.7 0.0 0.074 12.6 0.0 2.1 2 0 0 2 2 2 1 Bacterial dnaA protein DUF815 PF05673.8 gi|529076696|ref|YP_008375699.1| - 0.014 14.2 0.0 0.034 13.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_33 PF13671.1 gi|529076696|ref|YP_008375699.1| - 0.016 15.0 0.0 0.041 13.7 0.0 1.8 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|529076696|ref|YP_008375699.1| - 0.018 15.2 0.0 0.059 13.5 0.0 1.9 2 0 0 2 2 2 0 RNA helicase AAA_24 PF13479.1 gi|529076696|ref|YP_008375699.1| - 0.027 14.0 0.0 0.056 13.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain PqqD PF05402.7 gi|529076696|ref|YP_008375699.1| - 0.051 13.5 0.4 2.7 8.0 0.0 2.9 2 1 1 3 3 3 0 Coenzyme PQQ synthesis protein D (PqqD) DUF258 PF03193.11 gi|529076696|ref|YP_008375699.1| - 0.056 12.6 0.0 0.11 11.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Mg_chelatase PF01078.16 gi|529076696|ref|YP_008375699.1| - 0.064 12.4 0.0 0.11 11.5 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|529076696|ref|YP_008375699.1| - 0.14 11.8 0.0 0.76 9.4 0.0 2.0 2 0 0 2 2 2 0 NACHT domain TPR_14 PF13428.1 gi|529076696|ref|YP_008375699.1| - 0.58 10.9 4.0 2.1 9.1 0.0 3.6 3 0 0 3 3 3 0 Tetratricopeptide repeat Myosin_tail_1 PF01576.14 gi|529076697|ref|YP_008375700.1| - 0.00069 17.4 6.5 0.00094 17.0 4.5 1.1 1 0 0 1 1 1 1 Myosin tail ERM PF00769.14 gi|529076697|ref|YP_008375700.1| - 0.0019 17.7 8.9 0.0019 17.7 6.2 1.5 2 0 0 2 2 2 1 Ezrin/radixin/moesin family IncA PF04156.9 gi|529076697|ref|YP_008375700.1| - 0.0022 17.6 7.6 0.0022 17.6 5.3 1.6 2 0 0 2 2 2 1 IncA protein HOOK PF05622.7 gi|529076697|ref|YP_008375700.1| - 0.0056 14.5 7.0 0.0071 14.2 4.8 1.1 1 0 0 1 1 1 1 HOOK protein CENP-F_leu_zip PF10473.4 gi|529076697|ref|YP_008375700.1| - 0.0057 16.5 3.3 0.01 15.6 2.3 1.4 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Fmp27_WPPW PF10359.4 gi|529076697|ref|YP_008375700.1| - 0.0066 14.9 6.7 0.028 12.8 5.1 1.6 1 1 1 2 2 2 1 RNA pol II promoter Fmp27 protein domain Atg14 PF10186.4 gi|529076697|ref|YP_008375700.1| - 0.0088 15.0 5.3 0.013 14.4 3.6 1.2 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 bZIP_2 PF07716.10 gi|529076697|ref|YP_008375700.1| - 0.011 15.5 8.5 0.92 9.3 0.2 2.4 2 0 0 2 2 2 0 Basic region leucine zipper ADIP PF11559.3 gi|529076697|ref|YP_008375700.1| - 0.011 15.6 4.7 0.023 14.6 3.3 1.5 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding Syntaxin PF00804.20 gi|529076697|ref|YP_008375700.1| - 0.016 15.3 2.9 0.028 14.5 2.0 1.3 1 0 0 1 1 1 0 Syntaxin GAS PF13851.1 gi|529076697|ref|YP_008375700.1| - 0.027 13.6 2.5 0.044 12.9 1.7 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding DUF4407 PF14362.1 gi|529076697|ref|YP_008375700.1| - 0.03 13.3 0.7 0.044 12.7 0.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Tropomyosin PF00261.15 gi|529076697|ref|YP_008375700.1| - 0.039 13.0 9.2 0.063 12.3 6.4 1.3 1 0 0 1 1 1 0 Tropomyosin Reo_sigmaC PF04582.7 gi|529076697|ref|YP_008375700.1| - 0.042 13.0 0.1 0.066 12.3 0.1 1.3 1 0 0 1 1 1 0 Reovirus sigma C capsid protein eRF1_2 PF03464.10 gi|529076697|ref|YP_008375700.1| - 0.062 13.6 0.0 0.1 12.9 0.0 1.4 1 0 0 1 1 1 0 eRF1 domain 2 Tropomyosin_1 PF12718.2 gi|529076697|ref|YP_008375700.1| - 0.063 13.1 8.4 0.12 12.1 5.8 1.4 1 0 0 1 1 1 0 Tropomyosin like MscS_porin PF12795.2 gi|529076697|ref|YP_008375700.1| - 0.099 11.9 8.0 0.16 11.2 5.5 1.3 1 0 0 1 1 1 0 Mechanosensitive ion channel porin domain Jnk-SapK_ap_N PF09744.4 gi|529076697|ref|YP_008375700.1| - 0.11 12.4 6.6 0.21 11.5 4.5 1.4 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 DUF342 PF03961.8 gi|529076697|ref|YP_008375700.1| - 0.12 10.7 1.4 0.16 10.3 1.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) APG6 PF04111.7 gi|529076697|ref|YP_008375700.1| - 0.12 11.4 3.8 0.18 10.8 2.7 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 bZIP_1 PF00170.16 gi|529076697|ref|YP_008375700.1| - 0.13 12.2 6.3 0.56 10.1 1.2 2.6 1 1 1 2 2 2 0 bZIP transcription factor Herpes_BLRF2 PF05812.7 gi|529076697|ref|YP_008375700.1| - 0.16 11.7 2.7 0.46 10.2 1.9 1.8 1 1 0 1 1 1 0 Herpesvirus BLRF2 protein Nup54 PF13874.1 gi|529076697|ref|YP_008375700.1| - 0.21 11.2 4.7 0.37 10.4 3.2 1.4 1 0 0 1 1 1 0 Nucleoporin complex subunit 54 MbeD_MobD PF04899.7 gi|529076697|ref|YP_008375700.1| - 0.33 10.8 2.9 3 7.8 2.0 2.3 1 1 0 1 1 1 0 MbeD/MobD like CALCOCO1 PF07888.6 gi|529076697|ref|YP_008375700.1| - 0.47 8.6 6.0 0.73 8.0 4.2 1.2 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like CENP-Q PF13094.1 gi|529076697|ref|YP_008375700.1| - 0.47 10.4 9.1 1.3 9.0 6.4 1.7 1 1 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit WD40_alt PF14077.1 gi|529076697|ref|YP_008375700.1| - 0.48 10.0 5.8 0.21 11.2 1.2 2.2 2 0 0 2 2 2 0 Alternative WD40 repeat motif TMF_DNA_bd PF12329.3 gi|529076697|ref|YP_008375700.1| - 0.53 10.1 6.5 1.3 8.8 4.5 1.6 1 1 0 1 1 1 0 TATA element modulatory factor 1 DNA binding DUF4164 PF13747.1 gi|529076697|ref|YP_008375700.1| - 0.56 10.3 15.2 0.83 9.8 9.3 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4164) DivIC PF04977.10 gi|529076697|ref|YP_008375700.1| - 1.3 8.5 9.3 1.5 8.3 0.6 2.4 1 1 1 2 2 2 0 Septum formation initiator DUF904 PF06005.7 gi|529076697|ref|YP_008375700.1| - 1.5 9.1 10.3 7 7.0 7.1 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF904) Mnd1 PF03962.10 gi|529076697|ref|YP_008375700.1| - 2.6 7.6 8.4 2.3 7.8 1.0 1.9 1 1 1 2 2 2 0 Mnd1 family DUF3584 PF12128.3 gi|529076697|ref|YP_008375700.1| - 3.5 4.8 8.6 0.22 8.8 2.7 1.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3584) GreA_GreB_N PF03449.10 gi|529076697|ref|YP_008375700.1| - 3.6 7.7 13.3 2.1 8.4 7.1 2.2 2 1 0 2 2 1 0 Transcription elongation factor, N-terminal DUF2951 PF11166.3 gi|529076697|ref|YP_008375700.1| - 4.4 7.2 5.7 3.5 7.5 0.2 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF2951) DUF2968 PF11180.3 gi|529076697|ref|YP_008375700.1| - 8.1 5.7 10.7 2.7 7.3 4.7 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) Dynamitin PF04912.9 gi|529076699|ref|YP_008375702.1| - 0.0089 14.8 1.3 0.12 11.1 0.2 2.0 1 1 1 2 2 2 1 Dynamitin Fmp27_WPPW PF10359.4 gi|529076699|ref|YP_008375702.1| - 0.036 12.4 2.3 0.051 11.9 1.6 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Tropomyosin_1 PF12718.2 gi|529076699|ref|YP_008375702.1| - 0.058 13.2 0.8 0.097 12.5 0.6 1.3 1 0 0 1 1 1 0 Tropomyosin like NPV_P10 PF05531.7 gi|529076699|ref|YP_008375702.1| - 0.15 12.3 0.0 3 8.1 0.0 2.2 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein Sugarporin_N PF11471.3 gi|529076699|ref|YP_008375702.1| - 0.25 11.0 4.2 0.41 10.3 0.9 2.4 2 0 0 2 2 2 0 Maltoporin periplasmic N-terminal extension IncA PF04156.9 gi|529076699|ref|YP_008375702.1| - 0.75 9.3 5.2 1.6 8.3 3.6 1.5 1 1 0 1 1 1 0 IncA protein DUF4140 PF13600.1 gi|529076699|ref|YP_008375702.1| - 0.83 10.1 8.0 0.75 10.2 2.0 2.2 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) Nup54 PF13874.1 gi|529076699|ref|YP_008375702.1| - 0.9 9.2 5.7 2.4 7.8 3.2 1.9 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 HTH_5 PF01022.15 gi|529076700|ref|YP_008375703.1| - 1.8e-17 62.7 0.0 9e-16 57.2 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|529076700|ref|YP_008375703.1| - 8.3e-16 57.5 0.2 1.3e-13 50.4 0.3 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|529076700|ref|YP_008375703.1| - 6.2e-15 54.6 0.1 3e-06 26.8 0.1 2.2 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|529076700|ref|YP_008375703.1| - 1.4e-12 47.1 1.2 2.6e-08 33.4 0.3 2.4 2 0 0 2 2 2 2 MarR family HTH_27 PF13463.1 gi|529076700|ref|YP_008375703.1| - 3.2e-11 43.3 0.1 1.2e-06 28.6 0.0 2.6 2 1 0 2 2 2 2 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|529076700|ref|YP_008375703.1| - 4.8e-10 38.6 1.8 6.1e-08 31.9 0.0 2.9 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|529076700|ref|YP_008375703.1| - 9.8e-10 38.4 0.0 0.0014 18.6 0.0 2.3 2 0 0 2 2 2 2 Transcriptional regulator HTH_IclR PF09339.5 gi|529076700|ref|YP_008375703.1| - 3.7e-09 36.0 0.0 0.0039 16.7 0.0 3.0 2 1 0 2 2 2 2 IclR helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|529076700|ref|YP_008375703.1| - 2.3e-07 30.5 0.0 0.00083 19.0 0.0 2.4 2 0 0 2 2 2 2 Crp-like helix-turn-helix domain MarR PF01047.17 gi|529076700|ref|YP_008375703.1| - 4e-07 29.6 0.0 3.1e-06 26.7 0.0 2.1 2 0 0 2 2 2 1 MarR family Fe_dep_repress PF01325.14 gi|529076700|ref|YP_008375703.1| - 2.9e-06 27.0 0.0 0.0049 16.7 0.0 2.4 2 0 0 2 2 2 2 Iron dependent repressor, N-terminal DNA binding domain DUF2250 PF10007.4 gi|529076700|ref|YP_008375703.1| - 7.7e-06 25.7 0.0 0.1 12.5 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized protein conserved in archaea (DUF2250) HTH_11 PF08279.7 gi|529076700|ref|YP_008375703.1| - 1.3e-05 24.7 0.0 3.5e-05 23.3 0.0 1.7 1 0 0 1 1 1 1 HTH domain HTH_CodY PF08222.6 gi|529076700|ref|YP_008375703.1| - 3.6e-05 23.0 0.0 0.00091 18.5 0.0 2.3 2 0 0 2 2 2 1 CodY helix-turn-helix domain HTH_23 PF13384.1 gi|529076700|ref|YP_008375703.1| - 8e-05 22.1 0.0 0.0042 16.6 0.0 2.5 2 0 0 2 2 2 1 Homeodomain-like domain GntR PF00392.16 gi|529076700|ref|YP_008375703.1| - 0.00017 20.9 0.0 0.2 11.0 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory proteins, gntR family LexA_DNA_bind PF01726.11 gi|529076700|ref|YP_008375703.1| - 0.00023 20.6 0.0 0.022 14.3 0.0 2.5 2 0 0 2 2 2 1 LexA DNA binding domain DUF4423 PF14394.1 gi|529076700|ref|YP_008375703.1| - 0.00027 20.5 0.0 0.086 12.3 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4423) HemN_C PF06969.11 gi|529076700|ref|YP_008375703.1| - 0.00083 19.3 0.0 0.14 12.2 0.0 2.6 2 0 0 2 2 2 1 HemN C-terminal domain PadR PF03551.9 gi|529076700|ref|YP_008375703.1| - 0.00084 19.0 0.6 0.011 15.5 0.1 2.8 3 1 0 3 3 2 1 Transcriptional regulator PadR-like family FeoC PF09012.5 gi|529076700|ref|YP_008375703.1| - 0.0014 18.3 0.0 1.8 8.3 0.0 2.5 2 0 0 2 2 2 2 FeoC like transcriptional regulator HTH_29 PF13551.1 gi|529076700|ref|YP_008375703.1| - 0.0023 18.0 0.1 0.19 11.8 0.1 2.4 2 0 0 2 2 2 1 Winged helix-turn helix HTH_28 PF13518.1 gi|529076700|ref|YP_008375703.1| - 0.0031 17.4 0.1 0.21 11.6 0.2 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain HxlR PF01638.12 gi|529076700|ref|YP_008375703.1| - 0.0046 16.5 0.2 0.075 12.6 0.0 2.4 3 0 0 3 3 2 1 HxlR-like helix-turn-helix DDRGK PF09756.4 gi|529076700|ref|YP_008375703.1| - 0.0071 15.7 0.0 0.015 14.7 0.0 1.4 1 0 0 1 1 1 1 DDRGK domain HTH_10 PF04967.7 gi|529076700|ref|YP_008375703.1| - 0.013 15.1 0.0 0.037 13.6 0.0 1.8 2 0 0 2 2 1 0 HTH DNA binding domain DUF387 PF04079.11 gi|529076700|ref|YP_008375703.1| - 0.016 14.6 0.0 0.4 10.0 0.0 2.6 2 1 1 3 3 3 0 Putative transcriptional regulators (Ypuh-like) HTH_36 PF13730.1 gi|529076700|ref|YP_008375703.1| - 0.018 15.1 0.0 0.039 14.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain FaeA PF04703.7 gi|529076700|ref|YP_008375703.1| - 0.038 14.1 0.0 0.072 13.2 0.0 1.4 1 0 0 1 1 1 0 FaeA-like protein HTH_45 PF14947.1 gi|529076700|ref|YP_008375703.1| - 0.048 13.4 0.0 4.5 7.1 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DUF2513 PF10711.4 gi|529076700|ref|YP_008375703.1| - 0.051 13.6 0.0 0.086 12.9 0.0 1.3 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) ArsR PF09824.4 gi|529076700|ref|YP_008375703.1| - 0.057 12.7 0.0 0.39 10.0 0.0 1.9 2 0 0 2 2 2 0 ArsR transcriptional regulator PSRT PF07636.6 gi|529076700|ref|YP_008375703.1| - 0.078 12.4 0.8 0.16 11.4 0.5 1.5 1 0 0 1 1 1 0 PSRT EAP30 PF04157.11 gi|529076700|ref|YP_008375703.1| - 0.079 12.1 0.0 7.8 5.5 0.0 2.2 2 0 0 2 2 2 0 EAP30/Vps36 family RPA_C PF08784.6 gi|529076700|ref|YP_008375703.1| - 0.11 12.9 0.0 10 6.6 0.0 2.4 2 0 0 2 2 2 0 Replication protein A C terminal TAT_signal PF10518.4 gi|529076701|ref|YP_008375704.1| - 0.094 12.7 0.0 0.094 12.7 0.0 4.0 4 0 0 4 4 4 0 TAT (twin-arginine translocation) pathway signal sequence Asparaginase PF00710.15 gi|529076702|ref|YP_008375705.1| - 2.5e-85 286.0 0.5 3.3e-85 285.7 0.4 1.1 1 0 0 1 1 1 1 Asparaginase FG-GAP_2 PF14312.1 gi|529076703|ref|YP_008375706.1| - 3.5e-31 106.9 32.2 4.3e-11 42.6 0.1 7.2 8 0 0 8 8 8 6 FG-GAP repeat AnfO_nitrog PF09582.5 gi|529076703|ref|YP_008375706.1| - 0.0021 17.2 0.0 15 4.6 0.0 4.3 5 0 0 5 5 5 2 Iron only nitrogenase protein AnfO (AnfO_nitrog) TrkA_C PF02080.16 gi|529076704|ref|YP_008375707.1| - 4.7e-05 22.8 0.5 0.00015 21.3 0.3 1.9 1 0 0 1 1 1 1 TrkA-C domain Poly_export PF02563.11 gi|529076704|ref|YP_008375707.1| - 0.021 14.5 0.3 0.19 11.4 0.1 2.7 2 1 0 2 2 2 0 Polysaccharide biosynthesis/export protein TrkA_C PF02080.16 gi|529076705|ref|YP_008375708.1| - 4.3e-12 45.4 0.4 2.4e-10 39.8 0.0 2.7 2 0 0 2 2 2 2 TrkA-C domain TrkA_N PF02254.13 gi|529076706|ref|YP_008375709.1| - 7.1e-30 103.3 0.3 1.1e-29 102.7 0.2 1.3 1 0 0 1 1 1 1 TrkA-N domain Ion_trans_2 PF07885.11 gi|529076706|ref|YP_008375709.1| - 4.1e-13 48.8 4.7 4.1e-13 48.8 3.3 2.1 2 0 0 2 2 2 1 Ion channel Ion_trans PF00520.26 gi|529076706|ref|YP_008375709.1| - 0.034 13.4 0.4 0.082 12.1 0.3 1.6 1 1 0 1 1 1 0 Ion transport protein Usp PF00582.21 gi|529076707|ref|YP_008375710.1| - 2.6e-09 37.3 8.4 0.044 13.9 0.0 4.3 2 2 0 2 2 2 2 Universal stress protein family HPP PF04982.8 gi|529076707|ref|YP_008375710.1| - 2.1e-06 27.5 3.5 4.2e-06 26.6 2.4 1.5 1 0 0 1 1 1 1 HPP family DUF63 PF01889.12 gi|529076708|ref|YP_008375711.1| - 3.4e-11 43.7 8.0 6.2e-11 42.8 5.5 1.4 1 1 0 1 1 1 1 Membrane protein of unknown function DUF63 ABC2_membrane_5 PF13346.1 gi|529076708|ref|YP_008375711.1| - 0.0094 15.2 2.5 0.0094 15.2 1.7 2.6 1 1 2 3 3 3 1 ABC-2 family transporter protein COPI_assoc PF08507.5 gi|529076708|ref|YP_008375711.1| - 0.032 13.9 1.9 0.1 12.2 1.3 1.9 1 0 0 1 1 1 0 COPI associated protein DUF4213 PF13938.1 gi|529076708|ref|YP_008375711.1| - 0.23 11.6 2.0 14 5.8 0.2 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4213) UPF0004 PF00919.15 gi|529076710|ref|YP_008375713.1| - 3.4e-20 71.6 0.0 5.8e-20 70.9 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 Radical_SAM PF04055.16 gi|529076710|ref|YP_008375713.1| - 8.3e-19 68.3 0.0 1.2e-18 67.8 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily TRAM PF01938.15 gi|529076710|ref|YP_008375713.1| - 8.4e-07 28.6 0.0 1.5e-06 27.9 0.0 1.4 1 0 0 1 1 1 1 TRAM domain Memo PF01875.12 gi|529076711|ref|YP_008375714.1| - 3.8e-67 226.0 0.0 4.3e-67 225.8 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.13 gi|529076711|ref|YP_008375714.1| - 5e-07 28.9 0.3 7.1e-07 28.4 0.2 1.2 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase Cuticle_1 PF08140.6 gi|529076712|ref|YP_008375715.1| - 0.011 15.5 0.6 0.62 9.9 0.0 2.7 2 0 0 2 2 2 0 Crustacean cuticle protein repeat ZYG-11_interact PF05884.7 gi|529076712|ref|YP_008375715.1| - 0.1 11.6 0.6 0.63 9.0 0.0 2.0 2 0 0 2 2 2 0 Interactor of ZYG-11 DUF4131 PF13567.1 gi|529076712|ref|YP_008375715.1| - 0.11 11.9 0.1 0.18 11.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Aldo_ket_red PF00248.16 gi|529076714|ref|YP_008375717.1| - 2.1e-74 249.8 0.0 2.4e-74 249.7 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Lipase_GDSL_2 PF13472.1 gi|529076714|ref|YP_008375717.1| - 0.014 15.5 0.5 0.28 11.3 0.3 2.7 1 1 1 2 2 2 0 GDSL-like Lipase/Acylhydrolase family EutQ PF06249.7 gi|529076714|ref|YP_008375717.1| - 0.3 10.6 1.2 2.2 7.7 0.1 2.4 3 0 0 3 3 3 0 Ethanolamine utilisation protein EutQ RHH_1 PF01402.16 gi|529076714|ref|YP_008375717.1| - 0.48 10.4 0.0 0.48 10.4 0.0 2.8 4 0 0 4 4 4 0 Ribbon-helix-helix protein, copG family HTH_20 PF12840.2 gi|529076715|ref|YP_008375718.1| - 0.00018 21.2 0.0 0.0005 19.8 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_7 PF02796.10 gi|529076715|ref|YP_008375718.1| - 0.0016 18.2 0.0 0.0041 16.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase TrmB PF01978.14 gi|529076715|ref|YP_008375718.1| - 0.0059 16.2 0.0 0.016 14.8 0.0 1.8 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|529076715|ref|YP_008375718.1| - 0.0092 16.2 0.5 0.022 15.0 0.1 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|529076715|ref|YP_008375718.1| - 0.012 15.2 0.2 0.027 14.1 0.0 1.6 2 0 0 2 2 2 0 MarR family CENP-F_N PF10481.4 gi|529076715|ref|YP_008375718.1| - 0.013 14.8 0.1 0.02 14.3 0.1 1.2 1 0 0 1 1 1 0 Cenp-F N-terminal domain HTH_11 PF08279.7 gi|529076715|ref|YP_008375718.1| - 0.018 14.6 0.0 0.068 12.8 0.0 2.0 1 1 0 1 1 1 0 HTH domain HTH_IclR PF09339.5 gi|529076715|ref|YP_008375718.1| - 0.089 12.3 0.0 0.26 10.9 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain M PF02370.11 gi|529076715|ref|YP_008375718.1| - 0.24 11.8 2.3 0.62 10.6 1.6 1.7 1 0 0 1 1 1 0 M protein repeat DAO PF01266.19 gi|529076717|ref|YP_008375720.1| - 4.5e-27 94.8 0.0 5.7e-27 94.5 0.0 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Mqo PF06039.10 gi|529076717|ref|YP_008375720.1| - 2.8e-22 78.5 0.0 8.1e-21 73.7 0.0 2.0 1 1 0 1 1 1 1 Malate:quinone oxidoreductase (Mqo) NAD_binding_8 PF13450.1 gi|529076717|ref|YP_008375720.1| - 0.00089 19.2 0.0 0.002 18.0 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|529076717|ref|YP_008375720.1| - 0.00092 17.7 0.1 0.023 13.1 0.0 2.1 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|529076717|ref|YP_008375720.1| - 0.001 19.1 0.0 0.17 11.8 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|529076717|ref|YP_008375720.1| - 0.013 15.2 0.3 0.7 9.6 0.0 2.6 3 0 0 3 3 3 0 FAD-NAD(P)-binding Lycopene_cycl PF05834.7 gi|529076717|ref|YP_008375720.1| - 0.028 13.3 0.0 1.4 7.7 0.0 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein FAD_binding_2 PF00890.19 gi|529076717|ref|YP_008375720.1| - 0.057 12.2 0.0 0.076 11.8 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain Pyr_redox_2 PF07992.9 gi|529076717|ref|YP_008375720.1| - 0.067 13.0 0.1 1.4 8.7 0.1 2.2 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|529076717|ref|YP_008375720.1| - 0.069 13.5 0.3 19 5.7 0.0 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|529076717|ref|YP_008375720.1| - 0.12 11.4 0.1 0.47 9.5 0.0 1.9 2 0 0 2 2 2 0 Thi4 family CheF-arch PF04283.7 gi|529076718|ref|YP_008375721.1| - 0.05 12.8 0.4 0.055 12.6 0.3 1.0 1 0 0 1 1 1 0 Chemotaxis signal transduction system protein F from archaea BMFP PF04380.8 gi|529076718|ref|YP_008375721.1| - 0.052 13.6 0.6 0.054 13.6 0.4 1.1 1 0 0 1 1 1 0 Membrane fusogenic activity Radical_SAM PF04055.16 gi|529076719|ref|YP_008375722.1| - 3.7e-15 56.5 0.0 9.2e-15 55.1 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|529076719|ref|YP_008375722.1| - 2.8e-07 30.5 0.0 2.3e-05 24.3 0.0 2.6 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|529076719|ref|YP_008375722.1| - 1.4e-06 28.4 0.0 3.5e-06 27.1 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|529076719|ref|YP_008375722.1| - 0.014 15.7 0.0 0.028 14.7 0.0 1.5 1 0 0 1 1 1 0 Iron-sulfur cluster-binding domain ABC2_membrane_3 PF12698.2 gi|529076720|ref|YP_008375723.1| - 1.6e-20 73.4 0.8 2.1e-20 73.0 0.6 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|529076720|ref|YP_008375723.1| - 5.2e-12 45.2 6.5 1.7e-11 43.5 4.5 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|529076720|ref|YP_008375723.1| - 4e-09 35.9 0.0 4.2e-08 32.6 0.0 2.1 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|529076720|ref|YP_008375723.1| - 1.3e-07 30.9 5.5 1.3e-07 30.9 3.8 2.0 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_5 PF13346.1 gi|529076720|ref|YP_008375723.1| - 0.11 11.7 6.5 0.015 14.6 1.4 1.7 2 0 0 2 2 2 0 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|529076721|ref|YP_008375724.1| - 5.8e-08 31.9 0.4 5.8e-08 31.9 0.3 3.1 2 2 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|529076721|ref|YP_008375724.1| - 0.00031 19.8 24.9 0.00031 19.8 16.1 2.0 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|529076722|ref|YP_008375725.1| - 2.9e-29 102.1 0.0 4.8e-29 101.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|529076722|ref|YP_008375725.1| - 2.8e-15 57.0 0.1 3.4e-08 33.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|529076722|ref|YP_008375725.1| - 0.00019 21.7 0.2 0.00038 20.8 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|529076722|ref|YP_008375725.1| - 0.00067 20.4 0.0 0.002 18.9 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|529076722|ref|YP_008375725.1| - 0.0013 18.1 0.1 0.0034 16.8 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain SRP54 PF00448.17 gi|529076722|ref|YP_008375725.1| - 0.0057 16.1 0.0 0.011 15.2 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_30 PF13604.1 gi|529076722|ref|YP_008375725.1| - 0.0061 16.1 0.0 0.021 14.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|529076722|ref|YP_008375725.1| - 0.023 14.8 0.1 0.063 13.4 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|529076722|ref|YP_008375725.1| - 0.05 13.3 0.1 0.21 11.3 0.0 2.1 2 0 0 2 2 2 0 Part of AAA domain AAA_16 PF13191.1 gi|529076722|ref|YP_008375725.1| - 0.06 13.3 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA_24 PF13479.1 gi|529076722|ref|YP_008375725.1| - 0.062 12.8 0.4 1.1 8.7 0.1 2.3 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|529076722|ref|YP_008375725.1| - 0.08 12.8 0.2 0.51 10.2 0.1 2.3 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|529076722|ref|YP_008375725.1| - 0.11 12.4 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|529076722|ref|YP_008375725.1| - 0.12 11.7 0.1 0.28 10.5 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|529076722|ref|YP_008375725.1| - 0.12 11.7 0.1 0.35 10.2 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain AAA PF00004.24 gi|529076722|ref|YP_008375725.1| - 0.12 12.5 0.1 0.58 10.3 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.1 gi|529076722|ref|YP_008375725.1| - 0.15 12.0 1.1 0.46 10.4 0.1 2.2 2 0 0 2 2 2 0 AAA domain adh_short_C2 PF13561.1 gi|529076724|ref|YP_008375727.1| - 5.1e-32 111.5 0.7 6e-32 111.3 0.5 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|529076724|ref|YP_008375727.1| - 1.3e-30 106.5 6.2 1.7e-30 106.1 4.3 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|529076724|ref|YP_008375727.1| - 3.1e-12 46.5 3.2 4.4e-12 46.0 2.2 1.2 1 0 0 1 1 1 1 KR domain 3HCDH_N PF02737.13 gi|529076724|ref|YP_008375727.1| - 0.81 9.3 5.7 1 8.9 2.9 1.9 2 1 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain adh_short PF00106.20 gi|529076725|ref|YP_008375728.1| - 4.4e-23 82.0 0.6 6.8e-23 81.4 0.4 1.3 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|529076725|ref|YP_008375728.1| - 2.1e-17 63.6 0.0 1.6e-16 60.8 0.0 1.9 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|529076725|ref|YP_008375728.1| - 6e-08 32.5 0.9 1.4e-07 31.3 0.6 1.6 1 1 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|529076725|ref|YP_008375728.1| - 1.8e-06 27.6 0.0 6.6e-06 25.7 0.0 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|529076725|ref|YP_008375728.1| - 0.027 14.4 3.3 0.046 13.7 2.3 1.4 1 1 0 1 1 1 0 NADH(P)-binding SNF PF00209.13 gi|529076726|ref|YP_008375729.1| - 6.1e-54 183.3 38.3 2.6e-32 112.0 11.5 2.0 2 0 0 2 2 2 2 Sodium:neurotransmitter symporter family Glucan_synthase PF02364.10 gi|529076726|ref|YP_008375729.1| - 0.66 7.7 2.3 0.94 7.2 1.6 1.1 1 0 0 1 1 1 0 1,3-beta-glucan synthase component DDE_Tnp_1 PF01609.16 gi|529076727|ref|YP_008375730.1| - 3.7e-24 85.4 0.1 4.8e-24 85.0 0.1 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|529076727|ref|YP_008375730.1| - 0.0085 15.1 0.0 0.012 14.6 0.0 1.1 1 0 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_2 PF13586.1 gi|529076727|ref|YP_008375730.1| - 0.033 14.3 0.0 0.065 13.4 0.0 1.5 1 0 0 1 1 1 0 Transposase DDE domain UDG PF03167.14 gi|529076729|ref|YP_008375732.1| - 1e-06 28.3 0.0 1.2e-06 28.0 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily SseB PF07179.7 gi|529076729|ref|YP_008375732.1| - 0.13 12.1 0.0 3 7.6 0.0 2.2 2 0 0 2 2 2 0 SseB protein N-terminal domain Inositol_P PF00459.20 gi|529076731|ref|YP_008375734.1| - 5e-60 203.1 0.9 6e-60 202.8 0.6 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family Polysacc_synt_C PF14667.1 gi|529076732|ref|YP_008375735.1| - 2.6e-23 82.4 16.8 2.6e-23 82.4 11.7 3.7 2 2 2 4 4 4 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt PF01943.12 gi|529076732|ref|YP_008375735.1| - 5.2e-20 71.8 32.8 7.3e-19 68.0 10.3 2.5 1 1 1 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|529076732|ref|YP_008375735.1| - 7.1e-12 45.3 24.0 7.1e-12 45.3 16.6 2.3 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein MVIN PF03023.9 gi|529076732|ref|YP_008375735.1| - 1.5e-11 43.3 12.0 1.5e-11 43.3 8.3 2.3 2 1 0 2 2 2 1 MviN-like protein Abhydrolase_6 PF12697.2 gi|529076734|ref|YP_008375737.1| - 5.4e-31 108.2 5.0 6.9e-31 107.8 3.4 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|529076734|ref|YP_008375737.1| - 9.1e-13 48.1 0.2 4.1e-11 42.8 0.1 2.1 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|529076734|ref|YP_008375737.1| - 3.2e-07 30.1 1.2 1e-05 25.2 0.8 2.6 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.3 gi|529076734|ref|YP_008375737.1| - 6.9e-05 22.6 0.0 0.00015 21.5 0.0 1.5 1 0 0 1 1 1 1 Putative lysophospholipase ABC2_membrane_2 PF12679.2 gi|529076735|ref|YP_008375738.1| - 3.3e-10 39.2 18.8 6.6e-10 38.3 12.8 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|529076735|ref|YP_008375738.1| - 0.0022 17.2 11.5 0.0029 16.7 8.0 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|529076735|ref|YP_008375738.1| - 0.0057 15.7 11.8 0.0069 15.4 8.2 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|529076736|ref|YP_008375739.1| - 1e-24 87.3 0.0 1.4e-24 86.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|529076736|ref|YP_008375739.1| - 2.2e-18 67.2 0.0 3e-10 40.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|529076736|ref|YP_008375739.1| - 2.9e-07 29.9 0.2 0.012 14.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|529076736|ref|YP_008375739.1| - 1.2e-05 24.7 0.1 2.2e-05 23.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|529076736|ref|YP_008375739.1| - 7.9e-05 21.3 0.0 0.11 10.9 0.0 2.0 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|529076736|ref|YP_008375739.1| - 9.6e-05 22.0 3.2 0.029 14.1 0.2 2.5 2 0 0 2 2 2 2 Part of AAA domain AAA_15 PF13175.1 gi|529076736|ref|YP_008375739.1| - 0.00048 19.3 0.0 0.22 10.5 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.1 gi|529076736|ref|YP_008375739.1| - 0.00048 20.1 0.4 0.00094 19.2 0.3 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.1 gi|529076736|ref|YP_008375739.1| - 0.002 18.5 0.0 0.0029 17.9 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|529076736|ref|YP_008375739.1| - 0.0027 17.1 0.5 0.0057 16.0 0.1 1.8 2 0 0 2 2 2 1 AAA domain MutS_V PF00488.16 gi|529076736|ref|YP_008375739.1| - 0.021 14.2 0.0 1.8 7.8 0.0 2.1 2 0 0 2 2 2 0 MutS domain V Hydrolase PF00702.21 gi|529076736|ref|YP_008375739.1| - 0.043 14.2 0.1 0.054 13.9 0.1 1.3 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase AAA_10 PF12846.2 gi|529076736|ref|YP_008375739.1| - 0.05 13.0 0.1 0.7 9.2 0.1 2.1 2 0 0 2 2 2 0 AAA-like domain AAA_33 PF13671.1 gi|529076736|ref|YP_008375739.1| - 0.086 12.7 0.1 0.27 11.1 0.1 1.8 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|529076736|ref|YP_008375739.1| - 0.13 11.4 0.0 0.2 10.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 NACHT PF05729.7 gi|529076736|ref|YP_008375739.1| - 0.14 11.8 0.0 0.23 11.1 0.0 1.3 1 0 0 1 1 1 0 NACHT domain NosD PF05048.8 gi|529076737|ref|YP_008375740.1| - 8.3e-25 87.3 0.2 1.9e-24 86.1 0.2 1.5 1 1 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|529076737|ref|YP_008375740.1| - 9.1e-16 58.0 15.3 2.7e-11 43.4 4.8 2.7 1 1 1 2 2 2 2 Right handed beta helix region NosL PF05573.7 gi|529076737|ref|YP_008375740.1| - 1.6e-11 44.0 0.0 3e-11 43.2 0.0 1.4 1 0 0 1 1 1 1 NosL Pectate_lyase_3 PF12708.2 gi|529076737|ref|YP_008375740.1| - 0.00013 22.1 2.7 0.00028 21.1 1.8 1.7 1 1 0 1 1 1 1 Pectate lyase superfamily protein DUF1565 PF07602.6 gi|529076737|ref|YP_008375740.1| - 0.0042 16.2 7.0 2.1 7.4 2.7 3.1 1 1 1 2 2 2 2 Protein of unknown function (DUF1565) NosL PF05573.7 gi|529076738|ref|YP_008375741.1| - 1.2e-32 112.6 0.2 2e-32 111.9 0.1 1.4 1 1 0 1 1 1 1 NosL Peptidase_S11 PF00768.15 gi|529076738|ref|YP_008375741.1| - 0.013 14.8 0.0 0.015 14.5 0.0 1.1 1 0 0 1 1 1 0 D-alanyl-D-alanine carboxypeptidase PRY PF13765.1 gi|529076738|ref|YP_008375741.1| - 0.12 11.9 0.1 0.22 11.0 0.1 1.4 1 0 0 1 1 1 0 SPRY-associated domain DUF4459 PF14673.1 gi|529076738|ref|YP_008375741.1| - 0.78 9.4 3.0 2.2 7.9 0.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4459) SCO1-SenC PF02630.9 gi|529076739|ref|YP_008375742.1| - 4.5e-11 42.6 0.0 5.8e-11 42.3 0.0 1.1 1 0 0 1 1 1 1 SCO1/SenC Redoxin PF08534.5 gi|529076740|ref|YP_008375743.1| - 2.5e-09 36.8 0.0 3.1e-09 36.5 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.1 gi|529076740|ref|YP_008375743.1| - 4.5e-07 29.8 0.0 6.5e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like AhpC-TSA PF00578.16 gi|529076740|ref|YP_008375743.1| - 1.2e-05 24.9 0.0 1.5e-05 24.6 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin PF00085.15 gi|529076740|ref|YP_008375743.1| - 0.00093 18.8 0.0 0.0013 18.3 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|529076740|ref|YP_008375743.1| - 0.052 13.7 0.0 0.074 13.2 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like domain DsbD PF02683.10 gi|529076741|ref|YP_008375744.1| - 1.3e-13 51.0 12.0 1.8e-13 50.5 8.3 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region YtpI PF14007.1 gi|529076741|ref|YP_008375744.1| - 2.3 8.1 7.3 8.2 6.4 0.4 2.6 2 1 0 2 2 2 0 YtpI-like protein DUF420 PF04238.7 gi|529076742|ref|YP_008375745.1| - 1.2e-35 122.3 13.4 1.8e-35 121.7 9.3 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF420) DUF2306 PF10067.4 gi|529076742|ref|YP_008375745.1| - 0.0019 18.2 3.6 0.0019 18.2 2.5 2.8 2 1 1 3 3 3 1 Predicted membrane protein (DUF2306) Cytochrom_B561 PF03188.11 gi|529076742|ref|YP_008375745.1| - 0.053 13.3 16.0 0.11 12.3 4.1 2.8 1 1 1 2 2 2 0 Eukaryotic cytochrome b561 DUF4084 PF13321.1 gi|529076742|ref|YP_008375745.1| - 0.084 12.1 2.5 0.12 11.6 1.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4084) DUF1663 PF07909.6 gi|529076742|ref|YP_008375745.1| - 0.11 11.0 0.0 0.15 10.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1663) Intg_mem_TP0381 PF09529.5 gi|529076742|ref|YP_008375745.1| - 0.25 10.5 7.3 0.12 11.5 0.6 2.2 1 1 1 2 2 2 0 Integral membrane protein (intg_mem_TP0381) DUF1240 PF06836.7 gi|529076742|ref|YP_008375745.1| - 0.56 10.4 4.4 0.66 10.2 0.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1240) Thioredoxin PF00085.15 gi|529076743|ref|YP_008375746.1| - 5.4e-12 45.3 0.0 6e-12 45.1 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_3 PF13192.1 gi|529076743|ref|YP_008375746.1| - 0.0011 18.7 0.0 0.0016 18.1 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_2 PF13098.1 gi|529076743|ref|YP_008375746.1| - 0.004 17.3 0.0 0.13 12.4 0.0 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain DUF836 PF05768.9 gi|529076743|ref|YP_008375746.1| - 0.0059 16.8 0.0 0.0075 16.5 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) TrbC_Ftype PF09673.5 gi|529076743|ref|YP_008375746.1| - 0.0094 15.5 0.0 0.01 15.4 0.0 1.2 1 0 0 1 1 1 1 Type-F conjugative transfer system pilin assembly protein TraF PF13728.1 gi|529076743|ref|YP_008375746.1| - 0.018 14.5 0.0 0.072 12.5 0.0 1.8 1 1 0 1 1 1 0 F plasmid transfer operon protein HyaE PF07449.6 gi|529076743|ref|YP_008375746.1| - 0.019 14.8 0.1 0.054 13.3 0.0 1.7 2 0 0 2 2 2 0 Hydrogenase-1 expression protein HyaE MutS_V PF00488.16 gi|529076744|ref|YP_008375747.1| - 1.5e-90 302.6 0.0 2.5e-90 302.0 0.0 1.3 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.13 gi|529076744|ref|YP_008375747.1| - 1.8e-43 148.7 4.6 3.5e-43 147.7 2.7 1.8 2 0 0 2 2 2 1 MutS domain III MutS_I PF01624.15 gi|529076744|ref|YP_008375747.1| - 7.6e-36 122.5 0.0 2.4e-35 120.9 0.0 1.9 2 0 0 2 2 2 1 MutS domain I MutS_IV PF05190.13 gi|529076744|ref|YP_008375747.1| - 8.2e-30 102.8 0.1 1.9e-29 101.6 0.1 1.7 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.12 gi|529076744|ref|YP_008375747.1| - 1.2e-18 67.4 0.0 7.8e-18 64.8 0.0 2.3 2 0 0 2 2 2 1 MutS domain II CK2S PF15011.1 gi|529076744|ref|YP_008375747.1| - 0.024 14.4 0.8 0.024 14.4 0.6 1.8 2 0 0 2 2 2 0 Casein Kinase 2 substrate DAP3 PF10236.4 gi|529076744|ref|YP_008375747.1| - 0.12 11.3 0.0 0.2 10.5 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 AAA_29 PF13555.1 gi|529076744|ref|YP_008375747.1| - 0.16 11.5 0.0 0.33 10.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|529076744|ref|YP_008375747.1| - 0.35 11.1 0.0 3.1 8.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain AP_endonuc_2 PF01261.19 gi|529076745|ref|YP_008375748.1| - 1.6e-09 37.3 1.1 2.3e-05 23.8 0.0 2.2 1 1 0 2 2 2 2 Xylose isomerase-like TIM barrel Amidohydro_2 PF04909.9 gi|529076745|ref|YP_008375748.1| - 0.019 14.5 0.2 0.024 14.1 0.2 1.2 1 0 0 1 1 1 0 Amidohydrolase DUF2088 PF09861.4 gi|529076746|ref|YP_008375749.1| - 6.3e-39 133.1 0.0 9.2e-39 132.5 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF2088) DUF362 PF04015.7 gi|529076746|ref|YP_008375749.1| - 0.0059 16.0 0.0 0.014 14.9 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF362) DnaJ PF00226.26 gi|529076747|ref|YP_008375750.1| - 1.6e-11 43.7 0.0 3.2e-11 42.7 0.0 1.5 1 0 0 1 1 1 1 DnaJ domain Fer2 PF00111.22 gi|529076747|ref|YP_008375750.1| - 1.7e-11 43.7 0.1 3.2e-11 42.8 0.1 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain RPT PF13446.1 gi|529076747|ref|YP_008375750.1| - 0.062 12.7 0.0 0.15 11.4 0.0 1.7 1 1 0 1 1 1 0 A repeated domain in UCH-protein HTH_20 PF12840.2 gi|529076748|ref|YP_008375751.1| - 1.1e-13 50.7 0.1 1.9e-13 50.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|529076748|ref|YP_008375751.1| - 3e-07 29.7 0.0 4.5e-07 29.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|529076748|ref|YP_008375751.1| - 8.2e-07 28.5 0.0 1.5e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|529076748|ref|YP_008375751.1| - 0.0076 15.9 0.0 0.014 15.0 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF202 PF02656.10 gi|529076748|ref|YP_008375751.1| - 0.014 15.5 1.9 0.16 12.2 0.3 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF202) HTH_34 PF13601.1 gi|529076748|ref|YP_008375751.1| - 0.052 13.5 0.0 0.089 12.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain B-block_TFIIIC PF04182.7 gi|529076748|ref|YP_008375751.1| - 0.062 13.1 0.0 0.1 12.4 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC DUF2513 PF10711.4 gi|529076748|ref|YP_008375751.1| - 0.08 13.0 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) DUF387 PF04079.11 gi|529076748|ref|YP_008375751.1| - 0.088 12.1 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 Putative transcriptional regulators (Ypuh-like) DUF4536 PF15055.1 gi|529076748|ref|YP_008375751.1| - 9.1 6.4 6.3 4.6 7.3 0.4 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4536) Histidinol_dh PF00815.15 gi|529076749|ref|YP_008375752.1| - 3.4e-150 500.2 3.1 4e-150 500.0 2.2 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase HSCB_C PF07743.8 gi|529076749|ref|YP_008375752.1| - 3 8.3 4.7 30 5.1 0.1 3.2 2 1 1 3 3 3 0 HSCB C-terminal oligomerisation domain Bac_rhodopsin PF01036.13 gi|529076750|ref|YP_008375753.1| - 1.3e-45 155.4 20.3 1.5e-45 155.1 14.1 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein Git3 PF11710.3 gi|529076750|ref|YP_008375753.1| - 0.034 13.7 0.2 0.052 13.0 0.1 1.4 1 0 0 1 1 1 0 G protein-coupled glucose receptor regulating Gpa2 MCPsignal PF00015.16 gi|529076751|ref|YP_008375754.1| - 1.8e-46 158.3 59.8 5.3e-45 153.5 21.4 3.4 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|529076751|ref|YP_008375754.1| - 8.2e-12 45.1 9.2 1.6e-11 44.2 1.2 6.3 5 2 0 5 5 5 2 HAMP domain PhageMin_Tail PF10145.4 gi|529076751|ref|YP_008375754.1| - 0.0028 17.3 7.1 0.0028 17.3 4.9 3.2 3 1 0 3 3 2 1 Phage-related minor tail protein DUF948 PF06103.6 gi|529076751|ref|YP_008375754.1| - 0.014 15.1 33.0 2.1 8.2 0.3 7.2 4 3 2 6 6 6 0 Bacterial protein of unknown function (DUF948) AAA_13 PF13166.1 gi|529076751|ref|YP_008375754.1| - 0.047 12.1 27.4 0.46 8.8 11.3 2.8 1 1 1 2 2 2 0 AAA domain Seryl_tRNA_N PF02403.17 gi|529076751|ref|YP_008375754.1| - 0.64 10.0 32.4 1.4 8.9 0.5 5.6 3 2 2 5 5 5 0 Seryl-tRNA synthetase N-terminal domain DUF4200 PF13863.1 gi|529076751|ref|YP_008375754.1| - 1.1 9.2 32.7 0.68 9.8 4.9 4.8 3 2 2 5 5 5 0 Domain of unknown function (DUF4200) Prominin PF05478.6 gi|529076751|ref|YP_008375754.1| - 1.7 6.1 16.0 0.38 8.2 2.8 3.0 2 1 2 4 4 4 0 Prominin Laminin_II PF06009.7 gi|529076751|ref|YP_008375754.1| - 1.9 8.2 42.2 0.68 9.6 2.2 5.9 3 2 2 6 6 6 0 Laminin Domain II DUF3407 PF11887.3 gi|529076751|ref|YP_008375754.1| - 2 7.6 18.2 1.9 7.6 2.3 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF3407) BAR_2 PF10455.4 gi|529076751|ref|YP_008375754.1| - 4.6 6.0 17.5 0.41 9.5 8.4 1.9 1 1 1 2 2 2 0 Bin/amphiphysin/Rvs domain for vesicular trafficking Syntaxin-6_N PF09177.6 gi|529076751|ref|YP_008375754.1| - 5 7.5 35.9 0.94 9.9 2.0 5.6 3 2 1 5 5 4 0 Syntaxin 6, N-terminal LOH1CR12 PF10158.4 gi|529076751|ref|YP_008375754.1| - 6.3 6.5 10.5 8.6 6.1 1.6 3.7 2 2 2 4 4 4 0 Tumour suppressor protein Bacillus_HBL PF05791.6 gi|529076751|ref|YP_008375754.1| - 8.1 5.7 10.2 0.96 8.7 0.5 3.7 3 1 2 5 5 5 0 Bacillus haemolytic enterotoxin (HBL) Tnp_DNA_bind PF14706.1 gi|529076752|ref|YP_008375755.1| - 4.4e-26 90.3 0.0 7.9e-26 89.5 0.0 1.4 1 0 0 1 1 1 1 Transposase DNA-binding DDE_Tnp_1 PF01609.16 gi|529076752|ref|YP_008375755.1| - 1.4e-05 24.7 0.1 2.5e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain Dimer_Tnp_Tn5 PF02281.11 gi|529076752|ref|YP_008375755.1| - 0.035 14.2 0.0 0.084 13.0 0.0 1.7 1 0 0 1 1 1 0 Transposase Tn5 dimerisation domain Pkinase PF00069.20 gi|529076753|ref|YP_008375756.1| - 6.6e-14 51.6 0.0 9.5e-14 51.1 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.12 gi|529076753|ref|YP_008375756.1| - 5.3e-07 28.9 0.0 7.2e-07 28.5 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase HEAT PF02985.17 gi|529076753|ref|YP_008375756.1| - 0.0016 18.3 0.2 0.0041 17.0 0.1 1.6 1 0 0 1 1 1 1 HEAT repeat Kinase-like PF14531.1 gi|529076753|ref|YP_008375756.1| - 0.0025 16.8 0.0 0.0037 16.2 0.0 1.2 1 0 0 1 1 1 1 Kinase-like HEAT_2 PF13646.1 gi|529076753|ref|YP_008375756.1| - 0.0036 17.5 0.2 0.012 15.8 0.2 1.9 1 0 0 1 1 1 1 HEAT repeats Glycos_transf_4 PF00953.16 gi|529076754|ref|YP_008375757.1| - 0.00013 21.8 1.6 0.00013 21.8 1.1 2.3 2 1 0 2 2 2 1 Glycosyl transferase family 4 GDPD PF03009.12 gi|529076755|ref|YP_008375758.1| - 4.8e-30 104.9 0.3 1.4e-27 96.8 0.2 2.0 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.1 gi|529076755|ref|YP_008375758.1| - 0.0011 19.1 0.1 0.0048 17.0 0.0 2.2 2 0 0 2 2 2 1 Glycerophosphoryl diester phosphodiesterase family DUF21 PF01595.15 gi|529076756|ref|YP_008375759.1| - 0.058 12.6 0.6 0.14 11.4 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function DUF21 CoA_binding PF02629.14 gi|529076760|ref|YP_008375763.1| - 4.1e-24 84.8 1.7 9.9e-24 83.6 0.4 2.2 2 0 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.14 gi|529076760|ref|YP_008375763.1| - 3.5e-16 59.1 1.4 3.5e-16 59.1 1.0 1.8 2 0 0 2 2 2 1 CoA-ligase Succ_CoA_lig PF13607.1 gi|529076760|ref|YP_008375763.1| - 2.2e-10 40.3 0.1 3.7e-10 39.5 0.0 1.4 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|529076760|ref|YP_008375763.1| - 2.4e-08 34.1 1.5 5.7e-07 29.7 0.1 2.3 2 1 0 2 2 2 1 CoA binding domain GFO_IDH_MocA PF01408.17 gi|529076760|ref|YP_008375763.1| - 0.015 15.8 0.3 0.04 14.4 0.1 1.9 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold ATP-grasp_2 PF08442.5 gi|529076761|ref|YP_008375764.1| - 3.1e-62 209.5 0.1 4.8e-62 208.9 0.1 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.1 gi|529076761|ref|YP_008375764.1| - 6.6e-20 71.2 3.9 1.1e-19 70.5 1.5 2.1 2 1 0 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|529076761|ref|YP_008375764.1| - 3e-13 49.5 1.4 1.8e-10 40.4 0.2 2.4 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain Ligase_CoA PF00549.14 gi|529076761|ref|YP_008375764.1| - 3.1e-11 43.1 0.6 7e-11 41.9 0.4 1.5 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_4 PF13535.1 gi|529076761|ref|YP_008375764.1| - 1.4e-09 37.9 0.3 4.8e-09 36.1 0.1 2.0 2 0 0 2 2 2 1 ATP-grasp domain ATP-grasp PF02222.17 gi|529076761|ref|YP_008375764.1| - 5.3e-06 25.8 0.0 9.6e-06 25.0 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|529076761|ref|YP_008375764.1| - 6.3e-05 22.6 0.1 0.00011 21.7 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RimK PF08443.6 gi|529076761|ref|YP_008375764.1| - 0.02 14.3 0.0 0.035 13.5 0.0 1.4 1 0 0 1 1 1 0 RimK-like ATP-grasp domain VirK PF06903.7 gi|529076761|ref|YP_008375764.1| - 0.054 13.2 0.1 0.31 10.8 0.0 2.1 2 0 0 2 2 2 0 VirK protein ATPgrasp_Ter PF15632.1 gi|529076761|ref|YP_008375764.1| - 0.09 11.5 0.0 0.15 10.7 0.0 1.3 1 0 0 1 1 1 0 ATP-grasp in the biosynthetic pathway with Ter operon Methyltransf_11 PF08241.7 gi|529076763|ref|YP_008375766.1| - 1.5e-11 44.5 0.0 2.6e-11 43.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|529076763|ref|YP_008375766.1| - 4.8e-08 32.8 0.0 7.6e-08 32.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|529076763|ref|YP_008375766.1| - 3.3e-06 27.4 0.1 6.2e-06 26.5 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|529076763|ref|YP_008375766.1| - 3.9e-05 24.1 0.0 0.00016 22.1 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|529076763|ref|YP_008375766.1| - 0.0004 20.3 0.3 0.0051 16.8 0.1 2.3 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|529076763|ref|YP_008375766.1| - 0.0011 18.5 0.0 0.025 14.1 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.13 gi|529076763|ref|YP_008375766.1| - 0.0023 17.1 0.0 0.0035 16.5 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase RrnaAD PF00398.15 gi|529076763|ref|YP_008375766.1| - 0.0036 16.3 0.0 0.0051 15.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_12 PF08242.7 gi|529076763|ref|YP_008375766.1| - 0.0041 17.5 0.0 0.017 15.5 0.0 2.0 2 1 0 2 2 2 1 Methyltransferase domain FtsJ PF01728.14 gi|529076763|ref|YP_008375766.1| - 0.0055 16.7 0.0 0.006 16.5 0.0 1.4 1 1 0 1 1 1 1 FtsJ-like methyltransferase DREV PF05219.7 gi|529076763|ref|YP_008375766.1| - 0.058 12.2 0.0 0.08 11.8 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase TraB PF01963.12 gi|529076764|ref|YP_008375767.1| - 3.6e-36 124.9 0.0 1.3e-18 67.3 0.0 2.2 2 0 0 2 2 2 2 TraB family Peptidase_M50 PF02163.17 gi|529076765|ref|YP_008375768.1| - 1e-12 47.4 12.9 1.3e-11 43.8 8.9 2.2 1 1 0 1 1 1 1 Peptidase family M50 NDUF_B4 PF07225.7 gi|529076765|ref|YP_008375768.1| - 0.062 13.0 0.1 0.82 9.4 0.0 2.0 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4) DUF3918 PF13056.1 gi|529076765|ref|YP_008375768.1| - 0.14 11.4 0.0 0.28 10.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3918) ABC2_membrane_5 PF13346.1 gi|529076765|ref|YP_008375768.1| - 0.58 9.4 3.3 0.49 9.6 1.1 1.7 2 0 0 2 2 2 0 ABC-2 family transporter protein DUF1129 PF06570.6 gi|529076765|ref|YP_008375768.1| - 3.8 6.7 5.2 0.52 9.5 0.9 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) SCP2_2 PF13530.1 gi|529076766|ref|YP_008375769.1| - 2.1e-55 187.4 2.4 2.7e-55 187.1 1.7 1.1 1 0 0 1 1 1 1 Sterol carrier protein domain Acetyltransf_9 PF13527.1 gi|529076766|ref|YP_008375769.1| - 1.6e-24 86.1 0.1 6.2e-24 84.2 0.0 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|529076766|ref|YP_008375769.1| - 0.0024 17.9 0.0 0.0068 16.5 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain AIRS_C PF02769.17 gi|529076767|ref|YP_008375770.1| - 2.1e-20 73.2 0.0 3.3e-20 72.6 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|529076767|ref|YP_008375770.1| - 3.3e-14 52.8 1.1 8.1e-14 51.6 0.8 1.7 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain Usp PF00582.21 gi|529076768|ref|YP_008375771.1| - 1.7e-34 119.0 0.4 1.9e-34 118.8 0.3 1.0 1 0 0 1 1 1 1 Universal stress protein family Toprim_3 PF13362.1 gi|529076768|ref|YP_008375771.1| - 0.1 12.8 1.1 0.35 11.1 0.8 1.8 1 1 0 1 1 1 0 Toprim domain tRNA-Thr_ED PF08915.6 gi|529076769|ref|YP_008375772.1| - 8.3e-49 165.0 0.0 1.7e-48 164.1 0.0 1.5 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|529076769|ref|YP_008375772.1| - 2.1e-23 82.7 0.8 3.3e-23 82.1 0.5 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|529076769|ref|YP_008375772.1| - 1.2e-19 70.0 0.3 2.9e-19 68.7 0.1 1.8 2 0 0 2 2 2 1 Anticodon binding domain DUF2892 PF11127.3 gi|529076770|ref|YP_008375773.1| - 9.6e-18 63.7 2.8 1.2e-17 63.4 1.9 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) PIRT PF15099.1 gi|529076770|ref|YP_008375773.1| - 0.014 14.6 3.3 0.023 13.9 2.3 1.3 1 0 0 1 1 1 0 Phosphoinositide-interacting protein family DUF981 PF06168.6 gi|529076770|ref|YP_008375773.1| - 0.037 13.7 1.3 0.051 13.3 0.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF981) TerC PF03741.11 gi|529076770|ref|YP_008375773.1| - 0.064 12.6 4.0 0.087 12.2 2.7 1.1 1 0 0 1 1 1 0 Integral membrane protein TerC family RhodobacterPufX PF11511.3 gi|529076770|ref|YP_008375773.1| - 0.15 11.4 1.0 0.24 10.8 0.7 1.3 1 0 0 1 1 1 0 Intrinsic membrane protein PufX DUF3149 PF11346.3 gi|529076770|ref|YP_008375773.1| - 0.55 9.8 2.5 1.1 8.8 1.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3149) TrbC PF04956.8 gi|529076770|ref|YP_008375773.1| - 0.66 10.0 4.2 1.1 9.3 2.9 1.4 1 0 0 1 1 1 0 TrbC/VIRB2 family IncA PF04156.9 gi|529076770|ref|YP_008375773.1| - 4.8 6.7 8.8 6.7 6.2 6.1 1.2 1 0 0 1 1 1 0 IncA protein PspA_IM30 PF04012.7 gi|529076771|ref|YP_008375774.1| - 9.3e-29 100.3 35.0 9.3e-29 100.3 24.3 1.4 1 1 1 2 2 2 1 PspA/IM30 family Snf7 PF03357.16 gi|529076771|ref|YP_008375774.1| - 0.00012 21.4 15.4 0.00012 21.4 10.7 4.2 1 1 2 3 3 2 1 Snf7 DUF2576 PF10845.3 gi|529076771|ref|YP_008375774.1| - 0.022 13.9 0.4 4.8 6.4 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2576) Osmo_CC PF08946.5 gi|529076771|ref|YP_008375774.1| - 0.025 14.5 2.7 0.025 14.5 1.9 5.5 2 2 4 6 6 6 0 Osmosensory transporter coiled coil DUF972 PF06156.8 gi|529076771|ref|YP_008375774.1| - 0.044 14.1 26.3 0.41 11.0 4.4 3.5 1 1 2 3 3 3 0 Protein of unknown function (DUF972) Peptidase_M2 PF01401.13 gi|529076771|ref|YP_008375774.1| - 0.051 11.7 1.5 0.065 11.4 1.0 1.1 1 0 0 1 1 1 0 Angiotensin-converting enzyme ERM PF00769.14 gi|529076771|ref|YP_008375774.1| - 0.14 11.7 40.3 0.019 14.4 25.3 1.5 1 1 1 2 2 2 0 Ezrin/radixin/moesin family DUF948 PF06103.6 gi|529076771|ref|YP_008375774.1| - 0.23 11.3 8.5 1.2 9.0 2.3 3.1 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF948) DUF2217 PF10265.4 gi|529076771|ref|YP_008375774.1| - 0.65 8.7 12.8 0.85 8.3 8.8 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2217) AAA_13 PF13166.1 gi|529076771|ref|YP_008375774.1| - 0.79 8.1 23.0 0.39 9.1 14.2 1.5 1 1 0 1 1 1 0 AAA domain gpW PF02831.10 gi|529076771|ref|YP_008375774.1| - 0.83 9.2 4.3 3.2 7.3 0.1 3.0 3 0 0 3 3 3 0 gpW DUF2935 PF11155.3 gi|529076771|ref|YP_008375774.1| - 1.2 9.2 8.8 4.8 7.2 1.0 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF2935) Filament PF00038.16 gi|529076771|ref|YP_008375774.1| - 1.3 8.3 36.4 12 5.2 25.2 2.8 1 1 0 1 1 1 0 Intermediate filament protein DUF3584 PF12128.3 gi|529076771|ref|YP_008375774.1| - 1.4 6.1 40.1 2.5 5.2 27.8 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3584) IncA PF04156.9 gi|529076771|ref|YP_008375774.1| - 1.6 8.2 37.1 1.3 8.6 3.8 2.9 1 1 1 2 2 2 0 IncA protein Spc7 PF08317.6 gi|529076771|ref|YP_008375774.1| - 1.6 7.3 28.0 0.073 11.7 14.4 2.0 1 1 1 2 2 2 0 Spc7 kinetochore protein DUF3810 PF12725.2 gi|529076771|ref|YP_008375774.1| - 2.3 7.0 10.3 0.23 10.3 1.8 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3810) COG5 PF10392.4 gi|529076771|ref|YP_008375774.1| - 2.4 8.1 12.8 4.4 7.2 5.4 2.7 1 1 2 3 3 3 0 Golgi transport complex subunit 5 DUF4200 PF13863.1 gi|529076771|ref|YP_008375774.1| - 2.6 8.0 39.7 0.32 10.9 13.6 3.9 1 1 3 4 4 4 0 Domain of unknown function (DUF4200) YlqD PF11068.3 gi|529076771|ref|YP_008375774.1| - 2.8 7.9 31.2 1.1 9.2 8.8 3.0 1 1 1 3 3 3 0 YlqD protein APG6 PF04111.7 gi|529076771|ref|YP_008375774.1| - 4.1 6.3 41.1 0.072 12.1 16.4 3.0 1 1 1 2 2 2 0 Autophagy protein Apg6 DUF342 PF03961.8 gi|529076771|ref|YP_008375774.1| - 4.7 5.5 24.0 0.53 8.6 7.0 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF342) DUF4407 PF14362.1 gi|529076771|ref|YP_008375774.1| - 8.1 5.3 38.7 0.074 11.9 13.5 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) V_ATPase_I PF01496.14 gi|529076771|ref|YP_008375774.1| - 8.1 4.1 23.7 4.9 4.8 1.7 1.9 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family CTP_synth_N PF06418.9 gi|529076772|ref|YP_008375775.1| - 1.9e-127 424.0 0.0 2.9e-127 423.4 0.0 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|529076772|ref|YP_008375775.1| - 9.2e-47 158.9 0.0 1.8e-46 158.0 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase class-I CbiA PF01656.18 gi|529076772|ref|YP_008375775.1| - 1.1e-08 34.7 0.0 2e-08 33.8 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Peptidase_C26 PF07722.8 gi|529076772|ref|YP_008375775.1| - 2.2e-05 23.9 0.0 5.3e-05 22.7 0.0 1.6 1 1 1 2 2 2 1 Peptidase C26 PQQ_2 PF13360.1 gi|529076773|ref|YP_008375776.1| - 2.6e-29 102.3 5.3 8.4e-17 61.4 0.4 3.0 1 1 1 2 2 2 2 PQQ-like domain PQQ_3 PF13570.1 gi|529076773|ref|YP_008375776.1| - 8.8e-21 73.5 20.6 5.9e-07 29.5 0.0 8.4 8 0 0 8 8 8 6 PQQ-like domain PQQ PF01011.16 gi|529076773|ref|YP_008375776.1| - 1.3e-18 65.4 1.4 0.013 15.0 0.0 6.1 5 0 0 5 5 5 5 PQQ enzyme repeat GMP_synt_C PF00958.17 gi|529076774|ref|YP_008375777.1| - 1.7e-29 101.3 0.1 3.4e-29 100.4 0.1 1.5 1 0 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.12 gi|529076774|ref|YP_008375777.1| - 3.2e-08 32.7 0.0 7.4e-05 21.7 0.0 2.2 2 0 0 2 2 2 2 NAD synthase tRNA_Me_trans PF03054.11 gi|529076774|ref|YP_008375777.1| - 0.00022 19.8 0.0 0.0081 14.7 0.0 2.2 2 0 0 2 2 2 1 tRNA methyl transferase Asn_synthase PF00733.16 gi|529076774|ref|YP_008375777.1| - 0.0004 19.9 0.1 0.00097 18.7 0.0 1.6 2 0 0 2 2 2 1 Asparagine synthase QueC PF06508.8 gi|529076774|ref|YP_008375777.1| - 0.0027 17.0 0.0 0.014 14.6 0.0 2.0 1 1 0 2 2 2 1 Queuosine biosynthesis protein QueC ThiI PF02568.9 gi|529076774|ref|YP_008375777.1| - 0.0054 16.1 0.0 0.014 14.8 0.0 1.7 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) Arginosuc_synth PF00764.14 gi|529076774|ref|YP_008375777.1| - 0.052 12.5 0.0 0.085 11.8 0.0 1.3 1 0 0 1 1 1 0 Arginosuccinate synthase TrkA_N PF02254.13 gi|529076775|ref|YP_008375778.1| - 3.4e-05 23.7 1.0 3.9e-05 23.6 0.7 1.1 1 0 0 1 1 1 1 TrkA-N domain Lactamase_B PF00753.22 gi|529076776|ref|YP_008375779.1| - 2e-26 92.8 2.0 2.4e-26 92.6 1.4 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|529076776|ref|YP_008375779.1| - 7e-05 22.4 0.0 0.00011 21.8 0.0 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain MoCF_biosynth PF00994.19 gi|529076778|ref|YP_008375781.1| - 5.5e-16 58.2 1.6 2.1e-15 56.4 0.5 1.9 1 1 1 2 2 2 1 Probable molybdopterin binding domain eIF-3c_N PF05470.7 gi|529076778|ref|YP_008375781.1| - 0.52 8.3 2.2 0.65 8.0 1.5 1.0 1 0 0 1 1 1 0 Eukaryotic translation initiation factor 3 subunit 8 N-terminus T2SM PF04612.7 gi|529076779|ref|YP_008375782.1| - 0.33 10.7 2.6 0.24 11.1 0.2 1.7 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein M HATPase_c PF02518.21 gi|529076780|ref|YP_008375783.1| - 7.6e-15 54.5 0.2 1.7e-14 53.4 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|529076780|ref|YP_008375783.1| - 2.5e-10 40.2 0.1 4.4e-10 39.4 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS PF00989.19 gi|529076780|ref|YP_008375783.1| - 3.3e-06 26.8 0.0 1.2e-05 24.9 0.0 2.1 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|529076780|ref|YP_008375783.1| - 6.4e-05 23.2 0.0 0.0002 21.7 0.0 1.9 1 0 0 1 1 1 1 PAS domain PAS_8 PF13188.1 gi|529076780|ref|YP_008375783.1| - 0.00067 19.4 0.1 0.0021 17.8 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|529076780|ref|YP_008375783.1| - 0.0035 17.3 0.5 0.015 15.3 0.1 2.4 2 1 0 2 2 2 1 PAS fold HisKA PF00512.20 gi|529076780|ref|YP_008375783.1| - 0.0095 15.9 2.2 0.012 15.6 0.4 2.1 2 1 0 2 2 2 1 His Kinase A (phospho-acceptor) domain NUDIX PF00293.23 gi|529076781|ref|YP_008375784.1| - 2.4e-11 43.4 0.6 3e-11 43.1 0.4 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|529076781|ref|YP_008375784.1| - 0.0068 15.8 0.1 0.0094 15.3 0.1 1.4 1 1 0 1 1 1 1 NUDIX domain HTH_AsnC-type PF13404.1 gi|529076782|ref|YP_008375785.1| - 7.5e-17 60.5 0.6 1.3e-16 59.8 0.4 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|529076782|ref|YP_008375785.1| - 6.4e-15 54.2 0.1 1e-14 53.5 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|529076782|ref|YP_008375785.1| - 5e-09 35.7 1.0 8.3e-09 35.0 0.7 1.3 1 0 0 1 1 1 1 AsnC family HTH_20 PF12840.2 gi|529076782|ref|YP_008375785.1| - 2.9e-05 23.7 0.0 5.5e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|529076782|ref|YP_008375785.1| - 0.00015 21.1 0.0 0.00043 19.6 0.0 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_11 PF08279.7 gi|529076782|ref|YP_008375785.1| - 0.00038 20.0 0.1 0.00055 19.5 0.0 1.3 1 0 0 1 1 1 1 HTH domain Sigma70_r4 PF04545.11 gi|529076782|ref|YP_008375785.1| - 0.0004 19.6 0.1 0.00085 18.5 0.1 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.1 gi|529076782|ref|YP_008375785.1| - 0.00046 19.2 0.1 0.0012 17.9 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 MarR_2 PF12802.2 gi|529076782|ref|YP_008375785.1| - 0.00094 18.8 0.1 0.0017 17.9 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|529076782|ref|YP_008375785.1| - 0.0015 18.0 0.0 0.0029 17.1 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_DeoR PF08220.7 gi|529076782|ref|YP_008375785.1| - 0.0028 17.1 0.1 0.0048 16.3 0.1 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_23 PF13384.1 gi|529076782|ref|YP_008375785.1| - 0.0029 17.2 0.0 0.0049 16.4 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain MarR PF01047.17 gi|529076782|ref|YP_008375785.1| - 0.0053 16.4 0.2 0.011 15.4 0.0 1.5 2 0 0 2 2 1 1 MarR family HTH_27 PF13463.1 gi|529076782|ref|YP_008375785.1| - 0.0068 16.7 0.2 0.015 15.5 0.0 1.6 2 0 0 2 2 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|529076782|ref|YP_008375785.1| - 0.012 15.3 0.0 0.021 14.5 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HrcA_DNA-bdg PF03444.10 gi|529076782|ref|YP_008375785.1| - 0.014 14.8 0.0 0.025 13.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_28 PF13518.1 gi|529076782|ref|YP_008375785.1| - 0.015 15.3 0.0 0.024 14.6 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain FaeA PF04703.7 gi|529076782|ref|YP_008375785.1| - 0.024 14.8 0.0 0.039 14.1 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein HTH_Mga PF08280.6 gi|529076782|ref|YP_008375785.1| - 0.039 13.7 0.0 0.11 12.2 0.0 1.7 1 1 1 2 2 2 0 M protein trans-acting positive regulator (MGA) HTH domain DUF746 PF05344.6 gi|529076782|ref|YP_008375785.1| - 0.042 13.3 0.1 0.21 11.1 0.0 2.0 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) FeoC PF09012.5 gi|529076782|ref|YP_008375785.1| - 0.049 13.3 0.0 0.08 12.6 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator GerE PF00196.14 gi|529076782|ref|YP_008375785.1| - 0.057 12.7 0.0 0.17 11.2 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_38 PF13936.1 gi|529076782|ref|YP_008375785.1| - 0.067 12.7 0.0 0.18 11.3 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|529076782|ref|YP_008375785.1| - 0.07 12.8 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family GYD PF08734.6 gi|529076782|ref|YP_008375785.1| - 0.088 12.5 0.4 0.42 10.3 0.0 2.1 2 1 1 3 3 3 0 GYD domain Stk19 PF10494.4 gi|529076782|ref|YP_008375785.1| - 0.096 12.0 0.1 0.18 11.1 0.1 1.4 1 1 0 1 1 1 0 Serine-threonine protein kinase 19 CPSase_sm_chain PF00988.17 gi|529076783|ref|YP_008375786.1| - 1.1e-36 125.2 0.0 3.5e-36 123.5 0.0 1.9 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.23 gi|529076783|ref|YP_008375786.1| - 9.4e-36 123.0 0.0 1.3e-35 122.5 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|529076783|ref|YP_008375786.1| - 9.3e-07 28.4 0.2 0.00036 20.0 0.1 2.6 2 1 0 2 2 2 1 Peptidase C26 DJ-1_PfpI PF01965.19 gi|529076783|ref|YP_008375786.1| - 0.012 15.0 0.1 0.031 13.7 0.1 1.7 1 1 0 1 1 1 0 DJ-1/PfpI family UPF0179 PF03684.8 gi|529076784|ref|YP_008375787.1| - 3e-48 163.0 0.0 3.4e-48 162.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) DDE_Tnp_1_6 PF13751.1 gi|529076784|ref|YP_008375787.1| - 0.001 19.0 0.4 0.0035 17.3 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain EndIII_4Fe-2S PF10576.4 gi|529076784|ref|YP_008375787.1| - 0.11 12.7 1.8 0.11 12.7 1.2 2.7 2 0 0 2 2 2 0 Iron-sulfur binding domain of endonuclease III MSC PF09402.5 gi|529076784|ref|YP_008375787.1| - 0.11 11.1 0.8 3.3 6.3 0.1 2.0 2 0 0 2 2 2 0 Man1-Src1p-C-terminal domain UPF0047 PF01894.12 gi|529076786|ref|YP_008375789.1| - 1.7e-34 118.1 0.0 2e-34 117.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 Nop PF01798.13 gi|529076787|ref|YP_008375790.1| - 4e-42 143.0 0.0 6e-42 142.4 0.0 1.2 1 0 0 1 1 1 1 Putative snoRNA binding domain NMT1_2 PF13379.1 gi|529076787|ref|YP_008375790.1| - 0.11 11.7 2.1 0.17 11.2 1.5 1.2 1 0 0 1 1 1 0 NMT1-like family Barstar PF01337.13 gi|529076787|ref|YP_008375790.1| - 0.12 12.2 0.5 0.29 11.0 0.1 1.8 2 0 0 2 2 2 0 Barstar (barnase inhibitor) Fibrillarin PF01269.12 gi|529076788|ref|YP_008375791.1| - 2.6e-54 183.5 0.0 3.1e-54 183.3 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin GCS2 PF04107.8 gi|529076789|ref|YP_008375792.1| - 2.9e-69 233.3 0.2 3.5e-69 233.1 0.1 1.0 1 0 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) TrmB PF01978.14 gi|529076790|ref|YP_008375793.1| - 5.1e-07 29.2 0.0 8.3e-07 28.6 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|529076790|ref|YP_008375793.1| - 9.4e-06 25.3 0.1 1.5e-05 24.7 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|529076790|ref|YP_008375793.1| - 1.7e-05 24.0 0.0 2.8e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.12 gi|529076790|ref|YP_008375793.1| - 0.00016 21.1 0.0 0.00026 20.4 0.0 1.5 1 1 0 1 1 1 1 TFIIE alpha subunit GntR PF00392.16 gi|529076790|ref|YP_008375793.1| - 0.00079 18.8 0.0 0.0018 17.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_5 PF01022.15 gi|529076790|ref|YP_008375793.1| - 0.0017 17.9 0.0 0.0035 16.9 0.0 1.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|529076790|ref|YP_008375793.1| - 0.0075 15.9 0.1 0.013 15.1 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|529076790|ref|YP_008375793.1| - 0.01 16.1 0.0 0.023 15.0 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain SHOCT PF09851.4 gi|529076790|ref|YP_008375793.1| - 0.022 14.2 0.6 0.16 11.4 0.1 2.2 2 0 0 2 2 2 0 Short C-terminal domain HTH_IclR PF09339.5 gi|529076790|ref|YP_008375793.1| - 0.025 14.1 0.0 0.041 13.4 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain GPP34 PF05719.6 gi|529076790|ref|YP_008375793.1| - 0.034 14.2 0.1 0.088 12.8 0.0 1.7 1 1 1 2 2 2 0 Golgi phosphoprotein 3 (GPP34) Rrf2 PF02082.15 gi|529076790|ref|YP_008375793.1| - 0.094 12.8 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_Tnp_Tc3_2 PF01498.13 gi|529076790|ref|YP_008375793.1| - 0.11 12.5 0.0 0.21 11.6 0.0 1.5 1 0 0 1 1 1 0 Transposase HTH_42 PF06224.7 gi|529076790|ref|YP_008375793.1| - 0.12 11.6 0.9 0.31 10.3 0.2 1.7 1 1 1 2 2 2 0 Winged helix DNA-binding domain CTP_transf_2 PF01467.21 gi|529076791|ref|YP_008375794.1| - 1.4e-12 47.9 0.0 5.7e-11 42.7 0.0 2.0 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|529076791|ref|YP_008375794.1| - 0.0018 17.9 0.2 0.024 14.2 0.1 2.1 2 0 0 2 2 2 1 FAD synthetase TFIIB PF00382.14 gi|529076792|ref|YP_008375795.1| - 1.5e-07 31.1 0.5 3.5e-07 29.9 0.4 1.6 1 1 0 1 1 1 1 Transcription factor TFIIB repeat HTH_28 PF13518.1 gi|529076792|ref|YP_008375795.1| - 5.9e-05 22.9 0.1 0.00064 19.6 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|529076792|ref|YP_008375795.1| - 0.00087 18.8 0.4 0.0026 17.3 0.1 1.9 2 0 0 2 2 2 1 Homeodomain-like domain HTH_AsnC-type PF13404.1 gi|529076792|ref|YP_008375795.1| - 0.0017 17.8 0.8 0.0017 17.8 0.5 2.0 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_30 PF13556.1 gi|529076792|ref|YP_008375795.1| - 0.016 14.8 0.0 0.036 13.6 0.0 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain Sigma70_r4 PF04545.11 gi|529076792|ref|YP_008375795.1| - 0.033 13.5 0.1 0.082 12.2 0.0 1.8 2 1 0 2 2 2 0 Sigma-70, region 4 HTH_24 PF13412.1 gi|529076792|ref|YP_008375795.1| - 0.058 12.7 0.1 0.11 11.8 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding PQQ_3 PF13570.1 gi|529076793|ref|YP_008375796.1| - 5.6e-45 150.4 27.8 5.9e-11 42.2 0.0 8.3 8 1 0 8 8 8 7 PQQ-like domain PQQ_2 PF13360.1 gi|529076793|ref|YP_008375796.1| - 4.9e-35 121.1 8.2 4.1e-15 55.8 0.3 3.4 1 1 2 3 3 3 3 PQQ-like domain PQQ PF01011.16 gi|529076793|ref|YP_008375796.1| - 2.7e-34 115.0 8.1 3e-08 32.7 0.0 7.2 7 0 0 7 7 7 5 PQQ enzyme repeat PepSY PF03413.14 gi|529076793|ref|YP_008375796.1| - 0.026 15.1 2.6 0.47 11.1 0.1 3.0 3 0 0 3 3 3 0 Peptidase propeptide and YPEB domain DUF2797 PF10977.3 gi|529076794|ref|YP_008375797.1| - 2.1e-43 148.6 0.5 3.1e-42 144.8 0.4 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF2797) CARDB PF07705.6 gi|529076795|ref|YP_008375798.1| - 0.02 14.9 0.2 0.13 12.3 0.1 2.1 2 0 0 2 2 2 0 CARDB DUF624 PF04854.9 gi|529076796|ref|YP_008375799.1| - 0.11 12.3 2.5 0.45 10.4 0.2 2.0 1 1 1 2 2 2 0 Protein of unknown function, DUF624 DUF4282 PF14110.1 gi|529076796|ref|YP_008375799.1| - 0.14 12.3 2.9 0.19 11.9 2.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) CDC45 PF02724.9 gi|529076797|ref|YP_008375800.1| - 0.17 9.9 0.6 0.18 9.7 0.4 1.0 1 0 0 1 1 1 0 CDC45-like protein PhoU PF01895.14 gi|529076797|ref|YP_008375800.1| - 2.9 8.3 5.2 0.54 10.7 0.6 2.0 2 1 0 2 2 2 0 PhoU domain Cwf_Cwc_15 PF04889.7 gi|529076797|ref|YP_008375800.1| - 4.6 6.8 13.7 0.31 10.7 4.2 2.0 2 0 0 2 2 2 0 Cwf15/Cwc15 cell cycle control protein DUF4140 PF13600.1 gi|529076797|ref|YP_008375800.1| - 8.5 6.8 7.8 2.5 8.5 0.5 2.1 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) Fer2 PF00111.22 gi|529076798|ref|YP_008375801.1| - 4.1e-11 42.4 0.6 7.1e-11 41.7 0.4 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain BmKX PF09132.5 gi|529076798|ref|YP_008375801.1| - 0.75 9.7 5.3 11 5.9 0.2 2.4 2 0 0 2 2 2 0 BmKX DUF1082 PF06449.6 gi|529076799|ref|YP_008375802.1| - 0.0012 18.6 0.6 0.0015 18.4 0.4 1.1 1 0 0 1 1 1 1 Mitochondrial domain of unknown function (DUF1082) Thiolase_N PF00108.18 gi|529076800|ref|YP_008375803.1| - 5.6e-16 58.3 2.1 1e-13 50.9 0.1 2.2 1 1 1 2 2 2 2 Thiolase, N-terminal domain ketoacyl-synt PF00109.21 gi|529076800|ref|YP_008375803.1| - 1.3e-09 37.8 10.4 1.2e-08 34.7 2.1 3.3 2 2 2 4 4 4 2 Beta-ketoacyl synthase, N-terminal domain Thiolase_C PF02803.13 gi|529076800|ref|YP_008375803.1| - 7.4e-09 35.0 1.9 2e-08 33.6 0.1 2.6 3 0 0 3 3 3 1 Thiolase, C-terminal domain Ketoacyl-synt_C PF02801.17 gi|529076800|ref|YP_008375803.1| - 0.00054 19.7 1.8 0.011 15.6 0.5 3.1 2 1 0 2 2 2 1 Beta-ketoacyl synthase, C-terminal domain ACP_syn_III PF08545.5 gi|529076800|ref|YP_008375803.1| - 0.3 10.7 3.2 1.2 8.8 0.3 2.5 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DUF35 PF01796.12 gi|529076801|ref|YP_008375804.1| - 5.3e-11 42.5 1.0 7.8e-11 42.0 0.7 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|529076801|ref|YP_008375804.1| - 0.002 17.9 0.8 0.0055 16.5 0.3 1.9 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF11 PF01345.13 gi|529076801|ref|YP_008375804.1| - 0.12 12.4 0.1 11 6.0 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function DUF11 AICARFT_IMPCHas PF01808.13 gi|529076802|ref|YP_008375805.1| - 7e-87 291.4 0.1 9.2e-87 291.0 0.0 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme Formyl_trans_N PF00551.14 gi|529076802|ref|YP_008375805.1| - 4.9e-40 137.0 0.1 1.3e-39 135.6 0.0 1.7 2 0 0 2 2 2 1 Formyl transferase NIR_SIR PF01077.17 gi|529076803|ref|YP_008375806.1| - 0.064 12.6 0.1 0.13 11.5 0.0 1.6 1 0 0 1 1 1 0 Nitrite and sulphite reductase 4Fe-4S domain SVA PF05326.6 gi|529076803|ref|YP_008375806.1| - 0.17 11.6 1.5 15 5.4 0.0 2.4 2 0 0 2 2 2 0 Seminal vesicle autoantigen (SVA) LPAM_1 PF08139.7 gi|529076803|ref|YP_008375806.1| - 0.45 10.8 2.0 0.74 10.1 1.4 1.4 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Peptidase_MA_2 PF13485.1 gi|529076804|ref|YP_008375807.1| - 0.022 14.8 0.8 0.073 13.1 0.0 2.1 2 0 0 2 2 2 0 Peptidase MA superfamily Peptidase_M43 PF05572.8 gi|529076804|ref|YP_008375807.1| - 0.055 13.0 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A MLTD_N PF06474.7 gi|529076804|ref|YP_008375807.1| - 0.072 13.2 0.9 0.13 12.4 0.6 1.5 1 0 0 1 1 1 0 MltD lipid attachment motif Pterin_bind PF00809.17 gi|529076805|ref|YP_008375808.1| - 7.4e-72 241.1 0.1 1.2e-71 240.3 0.1 1.4 1 0 0 1 1 1 1 Pterin binding enzyme Mur_ligase_M PF08245.7 gi|529076805|ref|YP_008375808.1| - 3.4e-14 53.3 0.0 7.1e-14 52.2 0.0 1.6 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.16 gi|529076805|ref|YP_008375808.1| - 2e-08 34.1 0.0 6.1e-08 32.5 0.0 1.9 1 0 0 1 1 1 1 Mur ligase family, glutamate ligase domain RHH_1 PF01402.16 gi|529076806|ref|YP_008375809.1| - 0.00046 19.9 0.1 0.0013 18.5 0.0 1.8 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family DUF3960 PF13142.1 gi|529076806|ref|YP_008375809.1| - 0.028 14.1 0.0 0.037 13.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3960) Glyco_trans_4_4 PF13579.1 gi|529076807|ref|YP_008375810.1| - 7.7e-22 78.1 9.0 7.7e-22 78.1 6.3 2.3 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|529076807|ref|YP_008375810.1| - 3.5e-16 59.4 0.1 3.6e-15 56.1 0.1 2.1 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.15 gi|529076807|ref|YP_008375810.1| - 1.8e-13 50.2 0.0 2.6e-13 49.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|529076807|ref|YP_008375810.1| - 0.0011 18.7 0.0 0.0021 17.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Fe-ADH_2 PF13685.1 gi|529076808|ref|YP_008375811.1| - 8.1e-63 212.0 1.0 1e-62 211.7 0.7 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|529076808|ref|YP_008375811.1| - 1.4e-21 76.5 8.2 2.7e-21 75.6 5.7 1.3 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|529076808|ref|YP_008375811.1| - 4.6e-13 48.6 0.8 1.4e-12 47.0 0.5 1.6 1 1 0 1 1 1 1 3-dehydroquinate synthase AP_endonuc_2 PF01261.19 gi|529076808|ref|YP_008375811.1| - 0.015 14.5 0.2 0.14 11.4 0.0 2.1 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel MatE PF01554.13 gi|529076809|ref|YP_008375812.1| - 7.1e-33 113.5 30.9 3.2e-17 62.6 5.5 2.9 2 1 1 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|529076809|ref|YP_008375812.1| - 1.7e-06 27.9 21.3 2.9e-05 23.8 3.9 4.4 5 1 1 6 6 6 2 Polysaccharide biosynthesis C-terminal domain Epimerase PF01370.16 gi|529076810|ref|YP_008375813.1| - 1.2e-34 119.8 1.0 2.6e-20 72.8 0.1 2.1 1 1 1 2 2 2 2 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|529076810|ref|YP_008375813.1| - 3.2e-12 46.8 0.2 5.9e-12 45.9 0.1 1.4 1 0 0 1 1 1 1 NADH(P)-binding RmlD_sub_bind PF04321.12 gi|529076810|ref|YP_008375813.1| - 5e-10 38.7 0.2 0.00033 19.6 0.0 2.1 2 0 0 2 2 2 2 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|529076810|ref|YP_008375813.1| - 2.7e-09 36.1 0.0 1.8e-06 26.8 0.0 2.1 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|529076810|ref|YP_008375813.1| - 1.5e-07 30.6 0.0 4.7e-05 22.4 0.0 2.1 2 0 0 2 2 2 2 Male sterility protein adh_short PF00106.20 gi|529076810|ref|YP_008375813.1| - 0.0044 16.9 0.1 0.024 14.5 0.0 2.2 1 1 1 2 2 2 1 short chain dehydrogenase NmrA PF05368.8 gi|529076810|ref|YP_008375813.1| - 0.014 14.6 0.0 0.023 13.9 0.0 1.3 1 0 0 1 1 1 0 NmrA-like family DUF296 PF03479.10 gi|529076811|ref|YP_008375814.1| - 3.4e-13 49.2 0.0 4.5e-13 48.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF296) 2HCT PF03390.10 gi|529076812|ref|YP_008375815.1| - 0.04 12.3 2.7 0.044 12.1 1.9 1.1 1 0 0 1 1 1 0 2-hydroxycarboxylate transporter family YbjM PF11045.3 gi|529076812|ref|YP_008375815.1| - 0.049 13.3 0.5 0.059 13.1 0.3 1.1 1 0 0 1 1 1 0 Putative inner membrane protein of Enterobacteriaceae Methyltransf_6 PF03737.10 gi|529076813|ref|YP_008375816.1| - 3.7e-14 52.8 0.5 7e-14 51.9 0.4 1.5 1 1 0 1 1 1 1 Demethylmenaquinone methyltransferase Pyr_redox_2 PF07992.9 gi|529076814|ref|YP_008375817.1| - 5.8e-24 85.0 0.1 1.5e-11 44.5 0.0 3.2 2 1 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Fer4_20 PF14691.1 gi|529076814|ref|YP_008375817.1| - 6.1e-23 80.5 0.0 9.4e-23 79.9 0.0 1.3 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox PF00070.22 gi|529076814|ref|YP_008375817.1| - 4.3e-12 46.2 0.2 3.1e-07 30.6 0.1 2.9 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|529076814|ref|YP_008375817.1| - 4.9e-12 46.3 0.3 0.00012 22.1 0.0 2.5 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|529076814|ref|YP_008375817.1| - 2.4e-11 43.4 0.4 3.4e-10 39.7 0.0 2.7 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.19 gi|529076814|ref|YP_008375817.1| - 1.8e-08 33.9 0.3 2.3e-07 30.2 0.0 2.5 3 0 0 3 3 3 1 Flavin containing amine oxidoreductase HI0933_like PF03486.9 gi|529076814|ref|YP_008375817.1| - 2.3e-07 29.6 0.2 5.3e-06 25.1 0.0 2.2 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.12 gi|529076814|ref|YP_008375817.1| - 3.7e-07 29.4 0.2 9.1e-07 28.1 0.0 1.6 2 0 0 2 2 2 1 Thi4 family DAO PF01266.19 gi|529076814|ref|YP_008375817.1| - 5.8e-07 28.7 1.3 3.8e-06 26.0 0.1 2.5 3 0 0 3 3 3 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|529076814|ref|YP_008375817.1| - 5.9e-07 28.8 0.0 1.8e-06 27.2 0.0 1.8 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.2 gi|529076814|ref|YP_008375817.1| - 2.8e-06 26.6 2.2 2e-05 23.9 0.0 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.16 gi|529076814|ref|YP_008375817.1| - 3.5e-06 26.6 0.1 0.00092 18.8 0.0 2.4 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.1 gi|529076814|ref|YP_008375817.1| - 5.9e-06 26.4 0.0 0.051 13.8 0.0 2.5 2 0 0 2 2 2 2 Putative NAD(P)-binding FAD_binding_2 PF00890.19 gi|529076814|ref|YP_008375817.1| - 1.8e-05 23.8 0.1 1.8e-05 23.8 0.1 2.5 3 0 0 3 3 3 1 FAD binding domain GIDA PF01134.17 gi|529076814|ref|YP_008375817.1| - 0.00016 20.7 0.3 0.0053 15.6 0.0 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A FMO-like PF00743.14 gi|529076814|ref|YP_008375817.1| - 0.00023 19.4 0.0 0.013 13.7 0.0 2.1 2 0 0 2 2 2 1 Flavin-binding monooxygenase-like NAD_binding_9 PF13454.1 gi|529076814|ref|YP_008375817.1| - 0.00043 20.0 0.0 0.0039 16.9 0.0 2.5 2 0 0 2 2 2 1 FAD-NAD(P)-binding K_oxygenase PF13434.1 gi|529076814|ref|YP_008375817.1| - 0.00082 18.3 0.0 0.18 10.6 0.0 2.5 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_10 PF13460.1 gi|529076814|ref|YP_008375817.1| - 0.0016 18.4 0.9 0.058 13.3 0.1 2.7 2 0 0 2 2 2 1 NADH(P)-binding TrkA_N PF02254.13 gi|529076814|ref|YP_008375817.1| - 0.0025 17.8 0.1 0.053 13.5 0.0 2.4 2 0 0 2 2 2 1 TrkA-N domain 3HCDH_N PF02737.13 gi|529076814|ref|YP_008375817.1| - 0.0029 17.3 1.5 0.0062 16.2 0.0 2.0 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|529076814|ref|YP_008375817.1| - 0.0057 16.7 0.0 3.5 7.7 0.0 2.7 3 0 0 3 3 2 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.14 gi|529076814|ref|YP_008375817.1| - 0.01 14.9 0.0 0.75 8.9 0.0 2.3 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Lycopene_cycl PF05834.7 gi|529076814|ref|YP_008375817.1| - 0.011 14.6 0.1 0.07 12.0 0.0 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein NAD_Gly3P_dh_N PF01210.18 gi|529076814|ref|YP_008375817.1| - 0.014 15.1 0.2 0.029 14.0 0.0 1.7 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus YjeF_N PF03853.10 gi|529076814|ref|YP_008375817.1| - 0.015 14.9 0.1 4 7.0 0.0 2.3 2 0 0 2 2 2 0 YjeF-related protein N-terminus Trp_halogenase PF04820.9 gi|529076814|ref|YP_008375817.1| - 0.021 13.4 0.1 0.25 9.9 0.0 2.1 2 0 0 2 2 2 0 Tryptophan halogenase AdoHcyase_NAD PF00670.16 gi|529076814|ref|YP_008375817.1| - 0.024 14.5 0.5 0.24 11.2 0.1 2.2 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ApbA PF02558.11 gi|529076814|ref|YP_008375817.1| - 0.025 13.9 0.1 0.075 12.4 0.1 1.9 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Rossmann-like PF10727.4 gi|529076814|ref|YP_008375817.1| - 0.038 13.7 0.0 0.082 12.6 0.0 1.5 1 0 0 1 1 1 0 Rossmann-like domain UDPG_MGDP_dh_N PF03721.9 gi|529076814|ref|YP_008375817.1| - 0.04 13.2 0.0 0.086 12.2 0.0 1.6 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_2 PF03446.10 gi|529076814|ref|YP_008375817.1| - 0.043 13.6 0.0 0.076 12.8 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|529076814|ref|YP_008375817.1| - 0.051 14.0 1.0 0.44 11.0 0.1 2.7 3 0 0 3 3 2 0 NADP oxidoreductase coenzyme F420-dependent Fer4_8 PF13183.1 gi|529076814|ref|YP_008375817.1| - 0.3 11.1 4.2 0.93 9.5 2.9 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain Glu_synthase PF01645.12 gi|529076815|ref|YP_008375818.1| - 3e-150 500.2 0.1 2.4e-149 497.2 0.0 2.0 2 0 0 2 2 2 1 Conserved region in glutamate synthase GATase_2 PF00310.16 gi|529076815|ref|YP_008375818.1| - 1.9e-125 418.3 0.0 2.6e-125 417.9 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Glu_syn_central PF04898.9 gi|529076815|ref|YP_008375818.1| - 3.2e-112 374.4 0.0 8.3e-112 373.1 0.0 1.7 1 0 0 1 1 1 1 Glutamate synthase central domain GXGXG PF01493.14 gi|529076815|ref|YP_008375818.1| - 1.2e-59 200.6 9.5 2.2e-59 199.8 6.6 1.3 1 0 0 1 1 1 1 GXGXG motif FMN_dh PF01070.13 gi|529076815|ref|YP_008375818.1| - 0.0029 16.5 1.7 0.0029 16.5 1.2 2.3 3 0 0 3 3 3 1 FMN-dependent dehydrogenase Acetyltransf_10 PF13673.1 gi|529076816|ref|YP_008375819.1| - 4.6e-12 46.1 0.0 5.5e-12 45.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|529076816|ref|YP_008375819.1| - 4.9e-08 32.8 0.0 7e-08 32.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|529076816|ref|YP_008375819.1| - 3.6e-05 23.8 0.0 4.8e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Gluconate_2-dh3 PF13618.1 gi|529076816|ref|YP_008375819.1| - 0.0014 18.7 0.0 0.0029 17.7 0.0 1.4 1 1 1 2 2 2 1 Gluconate 2-dehydrogenase subunit 3 FR47 PF08445.5 gi|529076816|ref|YP_008375819.1| - 0.0086 15.8 0.0 0.014 15.1 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|529076816|ref|YP_008375819.1| - 0.034 14.0 0.0 0.059 13.2 0.0 1.5 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Nudix_N PF12535.3 gi|529076816|ref|YP_008375819.1| - 0.14 11.6 0.1 0.31 10.5 0.0 1.6 1 0 0 1 1 1 0 Hydrolase of X-linked nucleoside diphosphate N terminal Mem_trans PF03547.13 gi|529076817|ref|YP_008375820.1| - 5.5e-23 80.8 14.4 8.4e-15 53.9 6.6 2.0 1 1 1 2 2 2 2 Membrane transport protein SBF PF01758.11 gi|529076817|ref|YP_008375820.1| - 0.00046 19.6 5.6 0.00046 19.6 3.9 2.9 3 0 0 3 3 3 2 Sodium Bile acid symporter family GRASP55_65 PF04495.9 gi|529076817|ref|YP_008375820.1| - 0.11 12.4 1.4 1.6 8.7 0.0 2.9 3 0 0 3 3 3 0 GRASP55/65 PDZ-like domain Flavoprotein PF02441.14 gi|529076818|ref|YP_008375821.1| - 3.9e-29 100.9 0.3 4.9e-29 100.6 0.2 1.1 1 0 0 1 1 1 1 Flavoprotein DUF126 PF01989.11 gi|529076819|ref|YP_008375822.1| - 9.9e-35 118.0 0.0 1.5e-34 117.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF126 DUF521 PF04412.8 gi|529076820|ref|YP_008375823.1| - 1.4e-139 465.0 0.0 1.6e-139 464.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) Aconitase PF00330.15 gi|529076820|ref|YP_008375823.1| - 0.031 12.7 0.0 0.044 12.2 0.0 1.1 1 0 0 1 1 1 0 Aconitase family (aconitate hydratase) Transcrip_reg PF01709.15 gi|529076820|ref|YP_008375823.1| - 0.14 11.2 0.2 0.47 9.5 0.0 1.8 2 0 0 2 2 2 0 Transcriptional regulator UbiD PF01977.11 gi|529076821|ref|YP_008375824.1| - 4.3e-95 318.5 3.0 5.2e-95 318.2 2.1 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase tRNA-synt_2c PF01411.14 gi|529076822|ref|YP_008375825.1| - 7.2e-14 50.9 0.1 9.7e-14 50.5 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|529076822|ref|YP_008375825.1| - 7.8e-13 48.0 0.4 1.4e-12 47.3 0.3 1.4 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain Methyltransf_26 PF13659.1 gi|529076823|ref|YP_008375826.1| - 9.2e-17 61.1 0.3 1.6e-16 60.4 0.2 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|529076823|ref|YP_008375826.1| - 1.9e-09 37.1 0.0 2.8e-09 36.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|529076823|ref|YP_008375826.1| - 5e-08 33.5 0.0 7.9e-08 32.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|529076823|ref|YP_008375826.1| - 7.1e-08 32.8 0.0 1.6e-05 25.3 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|529076823|ref|YP_008375826.1| - 2.7e-07 30.2 0.0 3.8e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|529076823|ref|YP_008375826.1| - 9.6e-07 28.6 0.0 3.2e-06 26.9 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain PrmA PF06325.8 gi|529076823|ref|YP_008375826.1| - 0.00011 21.4 0.3 0.00015 20.9 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_12 PF08242.7 gi|529076823|ref|YP_008375826.1| - 0.00012 22.4 0.0 0.00081 19.8 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain PCMT PF01135.14 gi|529076823|ref|YP_008375826.1| - 0.00029 20.4 0.0 0.0005 19.6 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TrkA_N PF02254.13 gi|529076823|ref|YP_008375826.1| - 0.00092 19.1 0.0 0.042 13.8 0.0 2.1 2 0 0 2 2 2 1 TrkA-N domain UPF0146 PF03686.8 gi|529076823|ref|YP_008375826.1| - 0.0026 17.5 0.0 0.0037 17.0 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) CMAS PF02353.15 gi|529076823|ref|YP_008375826.1| - 0.0039 16.2 0.0 0.038 13.0 0.0 1.9 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase Methyltransf_25 PF13649.1 gi|529076823|ref|YP_008375826.1| - 0.0064 16.8 0.0 0.017 15.4 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|529076823|ref|YP_008375826.1| - 0.0071 15.7 0.0 0.012 15.0 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW TehB PF03848.9 gi|529076823|ref|YP_008375826.1| - 0.011 14.9 0.0 0.014 14.5 0.0 1.1 1 0 0 1 1 1 0 Tellurite resistance protein TehB TPMT PF05724.6 gi|529076823|ref|YP_008375826.1| - 0.02 14.3 0.0 0.048 13.1 0.0 1.6 2 0 0 2 2 2 0 Thiopurine S-methyltransferase (TPMT) Met_10 PF02475.11 gi|529076823|ref|YP_008375826.1| - 0.046 13.2 0.0 0.066 12.7 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein UDPG_MGDP_dh_N PF03721.9 gi|529076823|ref|YP_008375826.1| - 0.054 12.8 0.0 0.081 12.2 0.0 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DUF137 PF02006.11 gi|529076823|ref|YP_008375826.1| - 0.087 12.2 0.0 0.13 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF137 Methyltransf_32 PF13679.1 gi|529076823|ref|YP_008375826.1| - 0.09 12.4 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain RrnaAD PF00398.15 gi|529076824|ref|YP_008375827.1| - 1.2e-47 162.1 0.0 1.4e-47 161.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|529076824|ref|YP_008375827.1| - 5.8e-09 36.0 0.7 1e-08 35.2 0.4 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|529076824|ref|YP_008375827.1| - 1.3e-06 28.9 0.1 4.2e-06 27.3 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain NodS PF05401.6 gi|529076824|ref|YP_008375827.1| - 0.017 14.5 0.0 0.03 13.7 0.0 1.3 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltransf_11 PF08241.7 gi|529076824|ref|YP_008375827.1| - 0.027 14.9 0.0 0.055 13.9 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.7 gi|529076824|ref|YP_008375827.1| - 0.029 14.8 0.1 0.11 12.9 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain DUF655 PF04919.7 gi|529076825|ref|YP_008375828.1| - 1.6e-61 207.1 0.0 1.9e-61 206.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.1 gi|529076825|ref|YP_008375828.1| - 0.00041 20.3 0.0 0.0013 18.7 0.0 1.7 1 1 1 2 2 2 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|529076825|ref|YP_008375828.1| - 0.00051 19.9 0.0 0.0012 18.7 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif RNA_pol_Rpb4 PF03874.11 gi|529076826|ref|YP_008375829.1| - 2.1e-14 53.5 0.4 2.5e-14 53.2 0.3 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb4 DUF1932 PF09130.6 gi|529076826|ref|YP_008375829.1| - 0.044 13.5 0.2 0.066 12.9 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1932) RNA_pol_Rpb1_6 PF04992.9 gi|529076826|ref|YP_008375829.1| - 0.084 12.6 0.1 0.14 11.8 0.1 1.3 1 1 0 1 1 1 0 RNA polymerase Rpb1, domain 6 Ribosomal_L21e PF01157.13 gi|529076827|ref|YP_008375830.1| - 1.9e-31 107.8 0.0 2.1e-31 107.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e EF1_GNE PF00736.14 gi|529076828|ref|YP_008375831.1| - 1e-19 70.0 0.5 1.1e-19 69.9 0.3 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain HMA PF00403.21 gi|529076828|ref|YP_008375831.1| - 0.13 12.3 0.2 0.35 11.0 0.1 1.7 2 0 0 2 2 2 0 Heavy-metal-associated domain DUF1610 PF07754.6 gi|529076829|ref|YP_008375832.1| - 6.4e-10 38.9 18.0 9.3e-05 22.4 4.8 2.6 2 1 1 3 3 3 2 Domain of unknown function (DUF1610) OrfB_Zn_ribbon PF07282.6 gi|529076829|ref|YP_008375832.1| - 0.00084 18.9 12.0 0.012 15.2 4.6 2.3 1 1 1 2 2 2 1 Putative transposase DNA-binding domain Zn_Tnp_IS91 PF14319.1 gi|529076829|ref|YP_008375832.1| - 0.0018 17.7 10.1 0.0021 17.5 7.0 1.1 1 0 0 1 1 1 1 Transposase zinc-binding domain zf-Mss51 PF13824.1 gi|529076829|ref|YP_008375832.1| - 0.0019 17.9 13.8 0.065 13.0 1.9 2.8 1 1 1 2 2 2 2 Zinc-finger of mitochondrial splicing suppressor 51 DZR PF12773.2 gi|529076829|ref|YP_008375832.1| - 0.0023 17.7 14.2 0.0084 15.9 1.6 2.3 1 1 1 2 2 2 2 Double zinc ribbon UPF0547 PF10571.4 gi|529076829|ref|YP_008375832.1| - 0.0038 16.8 15.9 0.26 11.0 0.1 3.9 4 0 0 4 4 4 2 Uncharacterised protein family UPF0547 PhnA_Zn_Ribbon PF08274.7 gi|529076829|ref|YP_008375832.1| - 0.0078 15.9 13.1 0.05 13.3 1.0 3.5 1 1 0 2 2 2 1 PhnA Zinc-Ribbon PolC_DP2 PF03833.8 gi|529076829|ref|YP_008375832.1| - 0.0088 13.7 7.7 0.0094 13.6 5.4 1.0 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 Prok-RING_1 PF14446.1 gi|529076829|ref|YP_008375832.1| - 0.012 15.2 10.9 0.17 11.6 1.2 2.3 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 C1_3 PF07649.7 gi|529076829|ref|YP_008375832.1| - 0.017 15.1 12.6 0.13 12.3 2.6 2.8 1 1 1 2 2 2 0 C1-like domain DNA_RNApol_7kD PF03604.8 gi|529076829|ref|YP_008375832.1| - 0.017 14.5 12.8 0.048 13.1 1.3 3.2 2 2 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-C2H2 PF00096.21 gi|529076829|ref|YP_008375832.1| - 0.028 14.7 12.7 4.9 7.7 0.4 3.4 3 0 0 3 3 3 0 Zinc finger, C2H2 type C1_1 PF00130.17 gi|529076829|ref|YP_008375832.1| - 0.032 13.9 1.8 0.032 13.9 1.2 2.5 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-H2C2_2 PF13465.1 gi|529076829|ref|YP_008375832.1| - 0.043 14.1 16.6 1 9.7 0.5 3.9 2 1 2 4 4 4 0 Zinc-finger double domain NMDAR2_C PF10565.4 gi|529076829|ref|YP_008375832.1| - 0.064 11.9 7.0 0.068 11.8 4.9 1.0 1 0 0 1 1 1 0 N-methyl D-aspartate receptor 2B3 C-terminus DUF2296 PF10058.4 gi|529076829|ref|YP_008375832.1| - 0.068 12.9 12.6 2.8 7.7 0.1 3.9 2 1 2 4 4 4 0 Predicted integral membrane metal-binding protein (DUF2296) Zn_Tnp_IS1595 PF12760.2 gi|529076829|ref|YP_008375832.1| - 0.082 12.7 17.4 4.1 7.2 12.1 3.0 1 1 0 1 1 1 0 Transposase zinc-ribbon domain FYVE_2 PF02318.11 gi|529076829|ref|YP_008375832.1| - 0.2 11.5 8.0 0.22 11.4 5.5 1.0 1 0 0 1 1 1 0 FYVE-type zinc finger zf-UBP PF02148.14 gi|529076829|ref|YP_008375832.1| - 0.21 11.7 1.0 0.21 11.7 0.7 2.5 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein zf-UBR PF02207.15 gi|529076829|ref|YP_008375832.1| - 0.26 11.0 12.5 11 5.8 8.6 2.5 1 1 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) zf-ribbon_3 PF13248.1 gi|529076829|ref|YP_008375832.1| - 0.27 10.4 18.7 0.49 9.6 2.7 3.7 1 1 2 3 3 3 0 zinc-ribbon domain C1_2 PF03107.11 gi|529076829|ref|YP_008375832.1| - 0.29 11.2 7.9 3.2 7.9 0.1 2.8 1 1 1 2 2 2 0 C1 domain zinc_ribbon_4 PF13717.1 gi|529076829|ref|YP_008375832.1| - 0.3 10.8 0.1 0.3 10.8 0.1 4.0 1 1 3 4 4 4 0 zinc-ribbon domain zf-C3HC4_3 PF13920.1 gi|529076829|ref|YP_008375832.1| - 0.31 10.7 14.6 7 6.4 6.5 2.8 2 1 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Sgf11 PF08209.6 gi|529076829|ref|YP_008375832.1| - 0.44 9.8 0.1 0.44 9.8 0.1 3.8 2 1 2 4 4 4 0 Sgf11 (transcriptional regulation protein) zinc_ribbon_2 PF13240.1 gi|529076829|ref|YP_008375832.1| - 0.44 10.0 20.0 0.37 10.3 0.6 4.0 3 1 0 3 3 3 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|529076829|ref|YP_008375832.1| - 0.45 10.4 19.8 9.1 6.3 2.9 3.9 1 1 2 3 3 3 0 Zinc ribbon domain Ribosomal_L34e PF01199.13 gi|529076829|ref|YP_008375832.1| - 0.53 10.5 4.1 7.6 6.8 0.2 2.3 1 1 1 2 2 2 0 Ribosomal protein L34e A2L_zn_ribbon PF08792.5 gi|529076829|ref|YP_008375832.1| - 0.56 9.7 15.6 0.87 9.1 3.0 3.5 1 1 1 2 2 2 0 A2L zinc ribbon domain zf-HIT PF04438.11 gi|529076829|ref|YP_008375832.1| - 0.72 9.5 18.8 3.5 7.3 1.4 3.7 1 1 2 3 3 3 0 HIT zinc finger NMD3 PF04981.8 gi|529076829|ref|YP_008375832.1| - 0.77 8.8 9.2 0.94 8.5 6.4 1.0 1 0 0 1 1 1 0 NMD3 family ParA PF10609.4 gi|529076829|ref|YP_008375832.1| - 0.8 9.6 3.0 1.6 8.6 0.2 2.1 1 1 1 2 2 2 0 ParA/MinD ATPase like zf-MYND PF01753.13 gi|529076829|ref|YP_008375832.1| - 0.82 9.5 9.7 6.8 6.6 3.6 2.4 1 1 1 2 2 2 0 MYND finger Ribosomal_L37ae PF01780.14 gi|529076829|ref|YP_008375832.1| - 0.85 9.5 10.0 1.2 9.0 2.9 2.6 1 1 1 2 2 2 0 Ribosomal L37ae protein family zinc_ribbon_5 PF13719.1 gi|529076829|ref|YP_008375832.1| - 0.96 9.0 17.9 2.4 7.7 1.9 4.0 1 1 3 4 4 4 0 zinc-ribbon domain HypA PF01155.14 gi|529076829|ref|YP_008375832.1| - 1 9.0 12.3 0.1 12.2 1.0 2.3 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family C1_4 PF07975.7 gi|529076829|ref|YP_008375832.1| - 1.3 9.1 12.1 1.2e+02 2.7 8.4 3.0 1 1 0 1 1 1 0 TFIIH C1-like domain IBR PF01485.16 gi|529076829|ref|YP_008375832.1| - 1.3 8.9 13.2 22 5.0 9.1 2.2 1 1 0 1 1 1 0 IBR domain DNA_ligase_ZBD PF03119.11 gi|529076829|ref|YP_008375832.1| - 1.4 8.6 13.8 1.6 8.4 1.2 3.3 2 1 1 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain TFIIS_C PF01096.13 gi|529076829|ref|YP_008375832.1| - 1.4 8.5 17.8 2.8 7.6 0.4 4.1 2 1 2 4 4 4 0 Transcription factor S-II (TFIIS) zf-RING_5 PF14634.1 gi|529076829|ref|YP_008375832.1| - 1.7 8.4 13.5 4 7.2 1.2 2.2 1 1 1 2 2 2 0 zinc-RING finger domain zf-C2HC5 PF06221.8 gi|529076829|ref|YP_008375832.1| - 1.7 8.4 11.8 2.3 8.0 4.4 2.4 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type zinc-ribbons_6 PF07191.7 gi|529076829|ref|YP_008375832.1| - 2 8.2 13.7 10 5.9 5.0 2.3 1 1 1 2 2 2 0 zinc-ribbons DUF2039 PF10217.4 gi|529076829|ref|YP_008375832.1| - 2.7 8.0 11.1 0.31 11.0 5.1 1.4 2 0 0 2 2 1 0 Uncharacterized conserved protein (DUF2039) zf-AN1 PF01428.11 gi|529076829|ref|YP_008375832.1| - 3.2 7.7 14.0 5.5 6.9 2.2 2.9 2 1 1 3 3 3 0 AN1-like Zinc finger zf-H2C2_5 PF13909.1 gi|529076829|ref|YP_008375832.1| - 3.3 8.1 0.1 3.3 8.1 0.1 3.3 3 0 0 3 3 3 0 C2H2-type zinc-finger domain RNHCP PF12647.2 gi|529076829|ref|YP_008375832.1| - 3.7 7.4 11.7 1.5e+02 2.2 8.1 2.3 1 1 0 1 1 1 0 RNHCP domain TF_Zn_Ribbon PF08271.7 gi|529076829|ref|YP_008375832.1| - 4.9 6.5 17.4 2.8 7.3 0.5 3.7 3 1 0 3 3 3 0 TFIIB zinc-binding PHD PF00628.24 gi|529076829|ref|YP_008375832.1| - 5.1 6.8 11.4 12 5.7 0.6 2.8 1 1 1 2 2 2 0 PHD-finger DUF1451 PF07295.6 gi|529076829|ref|YP_008375832.1| - 7.7 6.2 9.3 4.9 6.9 1.7 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1451) DUF1272 PF06906.6 gi|529076829|ref|YP_008375832.1| - 8.2 6.3 12.0 39 4.2 8.3 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) Ribosomal_L32p PF01783.18 gi|529076829|ref|YP_008375832.1| - 8.3 6.6 7.7 7.2e+02 0.4 5.4 3.1 1 1 0 1 1 1 0 Ribosomal L32p protein family zf-B_box PF00643.19 gi|529076829|ref|YP_008375832.1| - 8.3 6.3 11.8 9.3 6.2 4.4 2.4 1 1 1 2 2 2 0 B-box zinc finger zf-C3HC4 PF00097.20 gi|529076829|ref|YP_008375832.1| - 9.1 6.0 14.8 3.9e+02 0.8 10.2 2.7 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Desulfoferrod_N PF06397.7 gi|529076829|ref|YP_008375832.1| - 9.5 5.7 15.5 7.1 6.1 0.3 3.9 1 1 3 4 4 4 0 Desulfoferrodoxin, N-terminal domain CpXC PF14353.1 gi|529076829|ref|YP_008375832.1| - 9.6 6.1 14.3 1.5 8.7 0.1 3.3 1 1 2 3 3 3 0 CpXC protein Rubredoxin PF00301.15 gi|529076829|ref|YP_008375832.1| - 9.7 6.1 17.6 12 5.8 0.2 3.9 1 1 2 3 3 3 0 Rubredoxin RNA_pol_L_2 PF13656.1 gi|529076830|ref|YP_008375833.1| - 6.9e-18 63.8 0.0 8.3e-18 63.6 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|529076830|ref|YP_008375833.1| - 3.7e-08 32.3 0.0 4.6e-08 32.0 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain DUF2082 PF09855.4 gi|529076831|ref|YP_008375834.1| - 1.2e-27 95.5 0.5 1.3e-27 95.4 0.3 1.0 1 0 0 1 1 1 1 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-ribbon_3 PF13248.1 gi|529076831|ref|YP_008375834.1| - 0.00011 21.2 1.0 0.31 10.3 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|529076831|ref|YP_008375834.1| - 0.00076 19.7 1.4 0.0011 19.2 0.9 1.3 1 1 0 1 1 1 1 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.2 gi|529076831|ref|YP_008375834.1| - 0.0024 17.6 1.8 0.7 9.7 1.2 2.1 1 1 0 1 1 1 1 Transposase zinc-ribbon domain DUF2387 PF09526.5 gi|529076831|ref|YP_008375834.1| - 0.0087 15.9 1.7 0.094 12.6 1.1 2.0 1 1 1 2 2 2 1 Probable metal-binding protein (DUF2387) zinc_ribbon_2 PF13240.1 gi|529076831|ref|YP_008375834.1| - 0.0096 15.3 4.9 1.1 8.8 1.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|529076831|ref|YP_008375834.1| - 0.011 14.9 3.7 0.16 11.2 2.7 2.2 1 1 0 1 1 1 0 TFIIB zinc-binding TFIIS_C PF01096.13 gi|529076831|ref|YP_008375834.1| - 0.017 14.7 3.6 1.2 8.7 0.3 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DZR PF12773.2 gi|529076831|ref|YP_008375834.1| - 0.018 14.8 1.0 0.046 13.5 0.7 1.6 1 1 0 1 1 1 0 Double zinc ribbon Elf1 PF05129.8 gi|529076831|ref|YP_008375834.1| - 0.019 14.6 0.2 0.037 13.7 0.1 1.4 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like Zn-ribbon_8 PF09723.5 gi|529076831|ref|YP_008375834.1| - 0.023 14.6 0.3 2.1 8.3 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain A2L_zn_ribbon PF08792.5 gi|529076831|ref|YP_008375834.1| - 0.058 12.8 1.6 4.7 6.7 0.0 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain Zn_Tnp_IS91 PF14319.1 gi|529076831|ref|YP_008375834.1| - 0.06 12.8 0.1 2.7 7.5 0.0 2.0 2 0 0 2 2 2 0 Transposase zinc-binding domain zinc_ribbon_5 PF13719.1 gi|529076831|ref|YP_008375834.1| - 0.068 12.7 0.6 5.9 6.5 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-C4_Topoisom PF01396.14 gi|529076831|ref|YP_008375834.1| - 0.071 12.6 1.3 7.1 6.2 0.7 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Spt4 PF06093.8 gi|529076831|ref|YP_008375834.1| - 0.08 12.8 1.2 1.5 8.7 0.0 2.0 1 1 1 2 2 2 0 Spt4/RpoE2 zinc finger DNA_RNApol_7kD PF03604.8 gi|529076831|ref|YP_008375834.1| - 0.095 12.1 2.9 0.55 9.7 0.0 2.1 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit NOA36 PF06524.7 gi|529076831|ref|YP_008375834.1| - 0.098 11.8 0.1 0.11 11.7 0.0 1.1 1 0 0 1 1 1 0 NOA36 protein zinc_ribbon_4 PF13717.1 gi|529076831|ref|YP_008375834.1| - 0.1 12.2 1.0 6.7 6.4 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Ribosomal_S27e PF01667.12 gi|529076831|ref|YP_008375834.1| - 0.11 12.0 1.0 6.2 6.4 0.1 2.3 2 0 0 2 2 2 0 Ribosomal protein S27 OrfB_Zn_ribbon PF07282.6 gi|529076831|ref|YP_008375834.1| - 0.15 11.7 2.8 2.5 7.8 2.0 2.0 1 1 0 1 1 1 0 Putative transposase DNA-binding domain RNA_POL_M_15KD PF02150.11 gi|529076831|ref|YP_008375834.1| - 0.17 11.6 1.0 5.9 6.6 0.1 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit DUF2225 PF09986.4 gi|529076831|ref|YP_008375834.1| - 0.17 11.2 1.2 0.29 10.5 0.8 1.5 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) UPF0547 PF10571.4 gi|529076831|ref|YP_008375834.1| - 0.19 11.4 4.1 2.2 8.0 0.6 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-HYPF PF07503.7 gi|529076831|ref|YP_008375834.1| - 0.29 10.5 3.7 1.2 8.5 0.1 2.3 2 0 0 2 2 2 0 HypF finger CpXC PF14353.1 gi|529076831|ref|YP_008375834.1| - 0.38 10.7 1.9 1.3 8.9 1.3 1.8 1 1 0 1 1 1 0 CpXC protein zf-ZPR1 PF03367.8 gi|529076831|ref|YP_008375834.1| - 0.49 9.5 2.4 2.6 7.1 0.1 2.0 1 1 1 2 2 2 0 ZPR1 zinc-finger domain zf-IS66 PF13005.2 gi|529076831|ref|YP_008375834.1| - 0.52 10.3 5.5 5.6 7.0 4.0 2.2 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-ISL3 PF14690.1 gi|529076831|ref|YP_008375834.1| - 2.1 8.4 5.4 6.5 6.8 0.9 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 PhnA_Zn_Ribbon PF08274.7 gi|529076831|ref|YP_008375834.1| - 2.2 8.1 5.0 2.6 7.8 0.7 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon His_biosynth PF00977.16 gi|529076832|ref|YP_008375835.1| - 1.4e-80 269.8 0.2 1.5e-80 269.7 0.1 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.12 gi|529076832|ref|YP_008375835.1| - 3.3e-09 36.0 0.0 2.4e-06 26.5 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) ThiG PF05690.9 gi|529076832|ref|YP_008375835.1| - 1.9e-07 30.3 0.0 0.00034 19.7 0.0 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|529076832|ref|YP_008375835.1| - 3.6e-06 26.3 0.5 0.00068 18.8 0.0 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase PcrB PF01884.12 gi|529076832|ref|YP_008375835.1| - 1.6e-05 24.2 0.6 5.4e-05 22.5 0.1 1.9 1 1 1 2 2 2 1 PcrB family DHO_dh PF01180.16 gi|529076832|ref|YP_008375835.1| - 0.00022 20.2 0.1 0.0065 15.4 0.0 2.1 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase IMPDH PF00478.20 gi|529076832|ref|YP_008375835.1| - 0.0073 15.2 0.1 0.018 13.9 0.0 1.6 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain G3P_antiterm PF04309.7 gi|529076832|ref|YP_008375835.1| - 0.022 13.8 0.0 0.043 12.8 0.0 1.4 1 0 0 1 1 1 0 Glycerol-3-phosphate responsive antiterminator TMP-TENI PF02581.12 gi|529076832|ref|YP_008375835.1| - 0.035 13.2 0.1 0.19 10.8 0.0 2.0 2 0 0 2 2 2 0 Thiamine monophosphate synthase/TENI FMN_dh PF01070.13 gi|529076832|ref|YP_008375835.1| - 0.087 11.6 0.1 0.2 10.4 0.0 1.5 1 0 0 1 1 1 0 FMN-dependent dehydrogenase IGPS PF00218.16 gi|529076832|ref|YP_008375835.1| - 0.14 11.1 0.0 1.5 7.8 0.0 2.2 2 1 0 2 2 2 0 Indole-3-glycerol phosphate synthase YcfA PF07927.7 gi|529076833|ref|YP_008375836.1| - 0.0003 20.6 0.0 0.00034 20.4 0.0 1.1 1 0 0 1 1 1 1 YcfA-like protein UPF0150 PF03681.10 gi|529076834|ref|YP_008375837.1| - 3.4e-07 29.7 0.1 6.2e-07 28.9 0.1 1.5 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) Trypan_PARP PF05887.6 gi|529076835|ref|YP_008375838.1| - 0.017 14.9 0.2 0.021 14.6 0.2 1.1 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) PDGLE PF13190.1 gi|529076835|ref|YP_008375838.1| - 0.084 12.5 0.0 0.084 12.5 0.0 1.1 1 0 0 1 1 1 0 PDGLE domain AIRS PF00586.19 gi|529076836|ref|YP_008375839.1| - 5.9e-42 141.8 7.2 8.1e-26 90.1 0.1 3.7 4 0 0 4 4 4 2 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|529076836|ref|YP_008375839.1| - 1.1e-38 132.6 8.9 3.8e-29 101.6 0.7 2.9 3 0 0 3 3 3 2 AIR synthase related protein, C-terminal domain CitMHS PF03600.11 gi|529076837|ref|YP_008375840.1| - 2.4e-46 157.9 0.0 1e-39 136.1 0.0 2.1 1 1 1 2 2 2 2 Citrate transporter TrkA_C PF02080.16 gi|529076837|ref|YP_008375840.1| - 2.7e-22 78.1 5.6 1.5e-11 43.7 0.1 2.8 3 0 0 3 3 3 2 TrkA-C domain Na_sulph_symp PF00939.14 gi|529076837|ref|YP_008375840.1| - 4.2e-17 62.1 36.0 8.3e-11 41.4 12.8 3.1 3 0 0 3 3 3 3 Sodium:sulfate symporter transmembrane region DctM PF06808.7 gi|529076837|ref|YP_008375840.1| - 3.7e-06 25.7 18.3 3.7e-06 25.7 12.7 2.4 2 1 0 2 2 2 1 DctM-like transporters Metallophos_2 PF12850.2 gi|529076838|ref|YP_008375841.1| - 3.5e-13 49.6 0.0 3.7e-12 46.3 0.0 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain PBC PF03792.8 gi|529076838|ref|YP_008375841.1| - 0.0034 17.0 0.0 0.0079 15.9 0.0 1.5 2 0 0 2 2 2 1 PBC domain Glyco_transf_9 PF01075.12 gi|529076838|ref|YP_008375841.1| - 0.13 11.4 0.0 0.23 10.6 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase family 9 (heptosyltransferase) HMGL-like PF00682.14 gi|529076839|ref|YP_008375842.1| - 1.5e-68 230.9 5.1 2.2e-68 230.4 3.6 1.2 1 0 0 1 1 1 1 HMGL-like PIG-L PF02585.12 gi|529076839|ref|YP_008375842.1| - 0.052 14.0 0.3 0.14 12.7 0.1 1.8 2 0 0 2 2 2 0 GlcNAc-PI de-N-acetylase Lipase_GDSL_2 PF13472.1 gi|529076839|ref|YP_008375842.1| - 0.063 13.4 0.3 0.14 12.3 0.2 1.6 1 0 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family TPP_enzyme_C PF02775.16 gi|529076841|ref|YP_008375844.1| - 4.6e-51 172.4 0.3 1.5e-50 170.7 0.1 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.13 gi|529076841|ref|YP_008375844.1| - 5.8e-49 165.8 3.3 1.1e-48 164.9 0.5 2.6 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|529076841|ref|YP_008375844.1| - 1.9e-43 147.4 0.0 4.1e-43 146.4 0.0 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain CO_dh PF02552.11 gi|529076841|ref|YP_008375844.1| - 0.073 12.6 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit ALS_ss_C PF10369.4 gi|529076842|ref|YP_008375845.1| - 1.9e-22 78.7 0.4 2.9e-22 78.1 0.3 1.3 1 0 0 1 1 1 1 Small subunit of acetolactate synthase ACT_5 PF13710.1 gi|529076842|ref|YP_008375845.1| - 7.6e-15 54.4 0.0 1.7e-14 53.3 0.0 1.6 1 0 0 1 1 1 1 ACT domain ACT PF01842.20 gi|529076842|ref|YP_008375845.1| - 2.2e-13 49.3 0.5 6e-13 47.9 0.0 1.9 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.1 gi|529076842|ref|YP_008375845.1| - 0.0019 18.5 0.0 0.0042 17.3 0.0 1.5 1 0 0 1 1 1 1 ACT domain NIL PF09383.5 gi|529076842|ref|YP_008375845.1| - 0.0055 16.2 0.9 0.74 9.4 0.1 2.5 2 1 0 2 2 2 2 NIL domain TPR_21 PF09976.4 gi|529076842|ref|YP_008375845.1| - 0.025 14.5 1.5 0.039 13.8 1.1 1.2 1 0 0 1 1 1 0 Tetratricopeptide repeat DUF3786 PF12654.2 gi|529076842|ref|YP_008375845.1| - 0.038 13.2 0.0 0.072 12.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3786) IlvN PF07991.7 gi|529076843|ref|YP_008375846.1| - 2e-66 222.4 0.0 2.7e-66 222.0 0.0 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain IlvC PF01450.14 gi|529076843|ref|YP_008375846.1| - 1.1e-53 181.1 0.7 1.4e-53 180.7 0.5 1.1 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.12 gi|529076843|ref|YP_008375846.1| - 8.7e-06 26.0 0.0 1.9e-05 24.9 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|529076843|ref|YP_008375846.1| - 1.6e-05 24.1 0.0 2.9e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|529076843|ref|YP_008375846.1| - 0.00013 21.8 0.0 0.00028 20.7 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Mur_ligase PF01225.20 gi|529076843|ref|YP_008375846.1| - 0.02 14.9 0.2 0.045 13.8 0.1 1.6 1 0 0 1 1 1 0 Mur ligase family, catalytic domain NAD_Gly3P_dh_N PF01210.18 gi|529076843|ref|YP_008375846.1| - 0.14 11.9 0.0 2 8.1 0.0 2.2 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Aconitase PF00330.15 gi|529076844|ref|YP_008375847.1| - 3e-149 497.4 0.0 3.4e-149 497.2 0.0 1.0 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.8 gi|529076844|ref|YP_008375847.1| - 0.0025 16.4 0.0 0.0041 15.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF521) Aconitase_C PF00694.14 gi|529076845|ref|YP_008375848.1| - 1.3e-20 73.8 0.0 1.7e-20 73.4 0.0 1.2 1 0 0 1 1 1 1 Aconitase C-terminal domain DSHCT PF08148.7 gi|529076846|ref|YP_008375849.1| - 0.013 14.7 1.5 0.24 10.6 0.1 2.1 1 1 1 2 2 2 0 DSHCT (NUC185) domain Uds1 PF15456.1 gi|529076846|ref|YP_008375849.1| - 0.085 12.8 1.8 0.15 12.0 1.3 1.4 1 0 0 1 1 1 0 Up-regulated During Septation Glyco_hydro_4 PF02056.11 gi|529076846|ref|YP_008375849.1| - 0.13 11.5 0.0 0.2 10.9 0.0 1.2 1 0 0 1 1 1 0 Family 4 glycosyl hydrolase Cep57_CLD_2 PF14197.1 gi|529076846|ref|YP_008375849.1| - 0.75 9.7 7.8 0.92 9.4 3.8 2.2 2 1 0 2 2 2 0 Centrosome localisation domain of PPC89 DUF1269 PF06897.7 gi|529076848|ref|YP_008375851.1| - 0.043 13.8 0.5 0.049 13.6 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1269) Tnp_DNA_bind PF14706.1 gi|529076850|ref|YP_008375853.1| - 4.4e-26 90.3 0.0 7.9e-26 89.5 0.0 1.4 1 0 0 1 1 1 1 Transposase DNA-binding DDE_Tnp_1 PF01609.16 gi|529076850|ref|YP_008375853.1| - 1.4e-05 24.7 0.1 2.5e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain Dimer_Tnp_Tn5 PF02281.11 gi|529076850|ref|YP_008375853.1| - 0.035 14.2 0.0 0.084 13.0 0.0 1.7 1 0 0 1 1 1 0 Transposase Tn5 dimerisation domain OrfB_Zn_ribbon PF07282.6 gi|529076851|ref|YP_008375854.1| - 5.1e-23 80.5 0.5 8.4e-23 79.8 0.4 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|529076851|ref|YP_008375854.1| - 1.1e-16 60.9 0.0 1.6e-16 60.4 0.0 1.2 1 0 0 1 1 1 1 Probable transposase TF_Zn_Ribbon PF08271.7 gi|529076851|ref|YP_008375854.1| - 0.01 15.1 0.5 0.021 14.1 0.3 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding DUF4503 PF14951.1 gi|529076851|ref|YP_008375854.1| - 0.043 11.9 0.2 0.065 11.3 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4503) Zn_Tnp_IS1595 PF12760.2 gi|529076851|ref|YP_008375854.1| - 0.043 13.6 1.8 0.085 12.6 1.3 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-UDP PF14569.1 gi|529076851|ref|YP_008375854.1| - 0.07 12.8 0.3 0.2 11.4 0.2 1.7 1 0 0 1 1 1 0 Zinc-binding RING-finger DZR PF12773.2 gi|529076851|ref|YP_008375854.1| - 0.073 12.9 1.1 0.14 11.9 0.8 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|529076851|ref|YP_008375854.1| - 0.29 10.3 2.0 13 5.1 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|529076851|ref|YP_008375854.1| - 0.45 10.0 2.9 7 6.2 0.4 2.4 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|529076851|ref|YP_008375854.1| - 2 8.2 4.1 20 5.0 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 F_bP_aldolase PF01116.15 gi|529076852|ref|YP_008375855.1| - 2.2e-79 266.5 0.0 2.5e-79 266.3 0.0 1.0 1 0 0 1 1 1 1 Fructose-bisphosphate aldolase class-II TIM-br_sig_trns PF09370.5 gi|529076852|ref|YP_008375855.1| - 0.031 13.3 0.0 0.23 10.4 0.0 2.1 1 1 1 2 2 2 0 TIM-barrel signal transduction protein PfkB PF00294.19 gi|529076853|ref|YP_008375856.1| - 4.7e-43 147.4 0.2 7.6e-43 146.7 0.1 1.2 1 1 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|529076853|ref|YP_008375856.1| - 0.00032 19.9 0.0 0.00053 19.2 0.0 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase UBA PF00627.26 gi|529076853|ref|YP_008375856.1| - 0.092 12.6 0.3 4.3 7.3 0.1 2.6 2 0 0 2 2 2 0 UBA/TS-N domain Iso_dh PF00180.15 gi|529076854|ref|YP_008375857.1| - 2e-98 329.5 0.0 2.4e-98 329.3 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Glyco_hydro_52 PF03512.8 gi|529076854|ref|YP_008375857.1| - 0.075 11.6 0.0 0.11 11.0 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 52 OCC1 PF15506.1 gi|529076854|ref|YP_008375857.1| - 0.12 12.2 0.0 0.32 10.8 0.0 1.7 1 0 0 1 1 1 0 OCC1 family Lyase_1 PF00206.15 gi|529076855|ref|YP_008375858.1| - 4.6e-51 173.8 0.0 6e-51 173.4 0.0 1.1 1 0 0 1 1 1 1 Lyase ASL_C PF08328.6 gi|529076855|ref|YP_008375858.1| - 7.3e-40 135.3 0.0 1.7e-39 134.2 0.0 1.6 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminal Acyl-CoA_ox_N PF14749.1 gi|529076856|ref|YP_008375859.1| - 0.032 14.5 0.1 0.034 14.4 0.1 1.1 1 0 0 1 1 1 0 Acyl-coenzyme A oxidase N-terminal NAD_binding_1 PF00175.16 gi|529076857|ref|YP_008375860.1| - 4.6e-16 59.3 0.0 6.6e-14 52.3 0.0 2.3 1 1 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.19 gi|529076857|ref|YP_008375860.1| - 9.5e-15 54.5 0.0 1.9e-14 53.5 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain RHH_1 PF01402.16 gi|529076859|ref|YP_008375862.1| - 0.0016 18.2 0.0 0.003 17.3 0.0 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family GvpK PF05121.7 gi|529076859|ref|YP_008375862.1| - 0.011 15.4 0.1 0.018 14.8 0.1 1.2 1 0 0 1 1 1 0 Gas vesicle protein K SHOCT PF09851.4 gi|529076859|ref|YP_008375862.1| - 0.049 13.1 0.5 0.049 13.1 0.3 1.6 2 0 0 2 2 2 0 Short C-terminal domain RHH_2 PF03693.9 gi|529076859|ref|YP_008375862.1| - 0.059 13.5 0.2 4.7 7.4 0.0 2.0 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0156) CbiG_mid PF11761.3 gi|529076861|ref|YP_008375864.1| - 0.038 14.2 0.1 0.076 13.2 0.1 1.5 1 0 0 1 1 1 0 Cobalamin biosynthesis central region Aldo_ket_red PF00248.16 gi|529076863|ref|YP_008375866.1| - 1.2e-53 181.8 0.0 1.3e-53 181.6 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Methyltransf_11 PF08241.7 gi|529076864|ref|YP_008375867.1| - 1.3e-09 38.4 0.0 2.4e-09 37.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|529076864|ref|YP_008375867.1| - 2.1e-09 37.2 0.1 2.6e-09 37.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|529076864|ref|YP_008375867.1| - 1.1e-08 35.3 0.1 2e-08 34.5 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|529076864|ref|YP_008375867.1| - 1.9e-08 33.9 0.0 2.7e-08 33.4 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_18 PF12847.2 gi|529076864|ref|YP_008375867.1| - 6.3e-08 33.1 0.1 1.2e-07 32.2 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|529076864|ref|YP_008375867.1| - 1.6e-07 31.3 0.1 2.6e-07 30.6 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|529076864|ref|YP_008375867.1| - 1.4e-05 25.4 0.1 2.3e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|529076864|ref|YP_008375867.1| - 0.00019 21.0 0.0 0.00025 20.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|529076864|ref|YP_008375867.1| - 0.00075 20.2 0.3 0.0034 18.2 0.1 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.6 gi|529076864|ref|YP_008375867.1| - 0.012 14.2 0.0 0.016 13.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) DUF938 PF06080.7 gi|529076864|ref|YP_008375867.1| - 0.052 13.0 0.0 0.097 12.2 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_4 PF02390.12 gi|529076864|ref|YP_008375867.1| - 0.11 11.4 0.0 0.16 10.9 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase TM_helix PF05552.7 gi|529076865|ref|YP_008375868.1| - 2.4e-05 23.9 8.9 9.8e-05 21.9 0.8 3.2 3 1 0 3 3 3 2 Conserved TM helix DUF3188 PF11384.3 gi|529076865|ref|YP_008375868.1| - 7.2 6.2 9.2 0.95 9.0 0.9 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3188) Abhydrolase_3 PF07859.8 gi|529076866|ref|YP_008375869.1| - 6.2e-21 74.9 7.3 7.4e-19 68.1 5.1 2.5 1 1 0 1 1 1 1 alpha/beta hydrolase fold Peptidase_S9 PF00326.16 gi|529076866|ref|YP_008375869.1| - 3.1e-17 62.4 0.2 3.3e-11 42.8 0.0 2.2 2 0 0 2 2 2 2 Prolyl oligopeptidase family Abhydrolase_5 PF12695.2 gi|529076866|ref|YP_008375869.1| - 2.8e-14 53.0 0.7 4.4e-14 52.4 0.5 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family COesterase PF00135.23 gi|529076866|ref|YP_008375869.1| - 3.1e-12 45.9 0.0 6.4e-12 44.9 0.0 1.4 1 1 0 1 1 1 1 Carboxylesterase family DLH PF01738.13 gi|529076866|ref|YP_008375869.1| - 3.2e-08 33.1 0.0 5.9e-07 28.9 0.0 2.1 1 1 1 2 2 2 1 Dienelactone hydrolase family Abhydrolase_6 PF12697.2 gi|529076866|ref|YP_008375869.1| - 1e-06 28.8 9.5 4.4e-06 26.7 6.7 1.9 1 1 1 2 2 2 1 Alpha/beta hydrolase family LIP PF03583.9 gi|529076866|ref|YP_008375869.1| - 4.1e-05 22.9 0.1 0.036 13.2 0.0 2.2 2 0 0 2 2 2 2 Secretory lipase Abhydrolase_2 PF02230.11 gi|529076866|ref|YP_008375869.1| - 0.00031 20.2 0.0 0.0052 16.2 0.0 2.2 2 0 0 2 2 2 1 Phospholipase/Carboxylesterase FSH1 PF03959.8 gi|529076866|ref|YP_008375869.1| - 0.025 14.0 0.1 0.04 13.3 0.0 1.4 1 1 0 1 1 1 0 Serine hydrolase (FSH1) Peptidase_S15 PF02129.13 gi|529076866|ref|YP_008375869.1| - 0.03 13.7 0.3 0.077 12.4 0.1 1.6 1 1 1 2 2 2 0 X-Pro dipeptidyl-peptidase (S15 family) DUF2920 PF11144.3 gi|529076866|ref|YP_008375869.1| - 0.031 13.3 0.0 1.7 7.5 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF2920) DUF2048 PF09752.4 gi|529076866|ref|YP_008375869.1| - 0.046 12.5 0.1 0.11 11.3 0.0 1.6 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2048) Abhydrolase_4 PF08386.5 gi|529076866|ref|YP_008375869.1| - 0.063 13.1 0.0 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 TAP-like protein DUF2424 PF10340.4 gi|529076866|ref|YP_008375869.1| - 0.083 11.5 0.0 0.38 9.3 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2424) Esterase_phd PF10503.4 gi|529076866|ref|YP_008375869.1| - 0.13 11.4 4.6 3.1 7.0 0.2 3.3 3 2 1 4 4 4 0 Esterase PHB depolymerase BAAT_C PF08840.6 gi|529076866|ref|YP_008375869.1| - 0.17 11.5 0.0 0.53 9.9 0.0 1.7 1 1 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal AXE1 PF05448.7 gi|529076866|ref|YP_008375869.1| - 0.2 10.1 0.1 0.33 9.4 0.1 1.3 1 0 0 1 1 1 0 Acetyl xylan esterase (AXE1) HAD PF12710.2 gi|529076867|ref|YP_008375870.1| - 7.5e-21 75.1 0.1 9.1e-21 74.8 0.1 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|529076867|ref|YP_008375870.1| - 1.2e-14 55.2 1.3 4.9e-12 46.7 0.1 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|529076867|ref|YP_008375870.1| - 5.4e-11 42.5 0.1 6.8e-08 32.3 0.0 2.9 2 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|529076867|ref|YP_008375870.1| - 4.8e-09 36.6 0.2 1.5e-08 35.0 0.0 1.7 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.7 gi|529076867|ref|YP_008375870.1| - 1.3e-06 27.7 0.0 0.00083 18.5 0.0 2.1 2 0 0 2 2 2 2 Putative Phosphatase UMPH-1 PF05822.7 gi|529076867|ref|YP_008375870.1| - 0.0023 17.2 0.0 0.0034 16.7 0.0 1.3 1 0 0 1 1 1 1 Pyrimidine 5'-nucleotidase (UMPH-1) Hydrolase_6 PF13344.1 gi|529076867|ref|YP_008375870.1| - 0.011 15.6 0.0 0.04 13.8 0.0 2.0 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Glyco_trans_4_4 PF13579.1 gi|529076867|ref|YP_008375870.1| - 0.02 15.0 0.5 0.069 13.2 0.1 1.9 1 1 0 2 2 2 0 Glycosyl transferase 4-like domain DUF4392 PF14336.1 gi|529076867|ref|YP_008375870.1| - 0.081 11.7 0.9 4.8 5.8 0.1 2.2 1 1 0 2 2 2 0 Domain of unknown function (DUF4392) GATase PF00117.23 gi|529076869|ref|YP_008375872.1| - 6.6e-21 74.6 0.0 8.1e-21 74.3 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|529076869|ref|YP_008375872.1| - 8e-09 35.2 0.1 3.3e-08 33.2 0.1 2.0 1 1 0 1 1 1 1 Peptidase C26 GATase_3 PF07685.9 gi|529076869|ref|YP_008375872.1| - 0.00032 20.3 0.0 0.00083 18.9 0.0 1.7 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain HTS PF04204.11 gi|529076869|ref|YP_008375872.1| - 0.018 13.7 0.0 0.029 13.0 0.0 1.4 1 1 0 1 1 1 0 Homoserine O-succinyltransferase NYN PF01936.13 gi|529076870|ref|YP_008375873.1| - 1.9e-35 122.2 0.4 2.4e-35 121.9 0.3 1.0 1 0 0 1 1 1 1 NYN domain Clathrin PF00637.15 gi|529076870|ref|YP_008375873.1| - 0.11 12.1 0.2 0.18 11.4 0.1 1.3 1 0 0 1 1 1 0 Region in Clathrin and VPS FMO-like PF00743.14 gi|529076870|ref|YP_008375873.1| - 0.11 10.6 0.0 0.15 10.2 0.0 1.1 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like DUF4229 PF14012.1 gi|529076871|ref|YP_008375874.1| - 5.7 6.9 7.3 7.6 6.5 5.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4229) TGT_C2 PF14810.1 gi|529076872|ref|YP_008375875.1| - 9.3e-26 89.4 0.1 1.5e-25 88.8 0.1 1.3 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|529076872|ref|YP_008375875.1| - 4.3e-14 51.9 0.8 6.4e-14 51.4 0.6 1.3 1 0 0 1 1 1 1 PUA domain NAC PF01849.13 gi|529076873|ref|YP_008375876.1| - 3.1e-17 61.8 0.5 4.4e-17 61.3 0.1 1.4 2 0 0 2 2 2 1 NAC domain UBA PF00627.26 gi|529076873|ref|YP_008375876.1| - 0.0021 17.8 0.3 0.0021 17.8 0.2 2.4 2 0 0 2 2 2 1 UBA/TS-N domain UBA_4 PF14555.1 gi|529076873|ref|YP_008375876.1| - 0.13 11.8 0.3 0.24 10.9 0.2 1.4 1 0 0 1 1 1 0 UBA-like domain DUF1628 PF07790.6 gi|529076874|ref|YP_008375877.1| - 1.5e-07 32.0 0.0 3.1e-07 31.0 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) TFIIS_C PF01096.13 gi|529076876|ref|YP_008375879.1| - 7e-19 67.1 4.6 7e-19 67.1 3.2 2.1 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) TF_Zn_Ribbon PF08271.7 gi|529076876|ref|YP_008375879.1| - 4.4e-07 29.1 3.7 2.5e-05 23.4 0.1 2.5 2 1 0 2 2 2 1 TFIIB zinc-binding PhnA_Zn_Ribbon PF08274.7 gi|529076876|ref|YP_008375879.1| - 1.2e-05 25.0 0.2 0.025 14.3 0.0 2.5 2 1 0 2 2 2 2 PhnA Zinc-Ribbon Zn_Tnp_IS1595 PF12760.2 gi|529076876|ref|YP_008375879.1| - 3.3e-05 23.6 3.1 0.00043 20.0 0.7 2.3 2 0 0 2 2 2 1 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|529076876|ref|YP_008375879.1| - 0.00018 20.5 3.4 1.4 8.2 0.0 3.2 3 0 0 3 3 3 1 zinc-ribbon domain DUF2387 PF09526.5 gi|529076876|ref|YP_008375879.1| - 0.0018 18.1 6.1 0.0044 16.9 1.4 2.2 1 1 1 2 2 2 1 Probable metal-binding protein (DUF2387) DZR PF12773.2 gi|529076876|ref|YP_008375879.1| - 0.0019 18.0 6.3 0.21 11.4 4.4 2.3 1 1 0 1 1 1 1 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|529076876|ref|YP_008375879.1| - 0.0027 17.3 6.6 0.4 10.3 2.9 2.8 2 1 0 2 2 2 1 Putative transposase DNA-binding domain FdhE PF04216.7 gi|529076876|ref|YP_008375879.1| - 0.0034 17.1 0.3 0.0034 17.1 0.2 1.5 2 0 0 2 2 2 1 Protein involved in formate dehydrogenase formation Lar_restr_allev PF14354.1 gi|529076876|ref|YP_008375879.1| - 0.0051 17.0 7.0 0.047 14.0 1.1 2.3 1 1 1 2 2 2 1 Restriction alleviation protein Lar Rubredoxin PF00301.15 gi|529076876|ref|YP_008375879.1| - 0.0064 16.3 6.4 0.46 10.3 0.2 3.3 3 0 0 3 3 3 1 Rubredoxin DUF3797 PF12677.2 gi|529076876|ref|YP_008375879.1| - 0.0064 16.0 0.9 0.39 10.3 0.1 3.0 3 0 0 3 3 3 1 Domain of unknown function (DUF3797) Ogr_Delta PF04606.7 gi|529076876|ref|YP_008375879.1| - 0.0094 15.5 0.5 0.0094 15.5 0.4 1.9 2 0 0 2 2 2 1 Ogr/Delta-like zinc finger zf-ISL3 PF14690.1 gi|529076876|ref|YP_008375879.1| - 0.018 15.0 1.9 1.4 9.0 0.0 2.9 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 RRN7 PF11781.3 gi|529076876|ref|YP_008375879.1| - 0.019 14.4 9.6 0.76 9.3 0.8 3.3 3 0 0 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 zinc_ribbon_2 PF13240.1 gi|529076876|ref|YP_008375879.1| - 0.037 13.5 10.2 2.2 7.8 0.2 3.2 3 0 0 3 3 3 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|529076876|ref|YP_008375879.1| - 0.068 12.8 7.7 1 9.1 0.0 3.2 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit DNA_RNApol_7kD PF03604.8 gi|529076876|ref|YP_008375879.1| - 0.073 12.5 5.8 3.2 7.3 0.2 3.2 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit Terminase_GpA PF05876.7 gi|529076876|ref|YP_008375879.1| - 0.082 11.2 6.8 0.021 13.1 2.9 1.3 1 1 0 1 1 1 0 Phage terminase large subunit (GpA) zf-RING_3 PF14369.1 gi|529076876|ref|YP_008375879.1| - 0.087 12.8 2.5 1.4 8.9 0.1 2.7 3 0 0 3 3 3 0 zinc-finger zf-DNA_Pol PF08996.5 gi|529076876|ref|YP_008375879.1| - 0.1 11.9 0.2 0.15 11.3 0.2 1.3 1 0 0 1 1 1 0 DNA Polymerase alpha zinc finger YhfH PF14149.1 gi|529076876|ref|YP_008375879.1| - 0.12 12.2 4.4 5 7.0 0.1 3.1 3 0 0 3 3 3 0 YhfH-like protein zf-RING_5 PF14634.1 gi|529076876|ref|YP_008375879.1| - 0.15 11.8 4.8 0.49 10.1 1.6 2.5 1 1 1 2 2 2 0 zinc-RING finger domain Elf1 PF05129.8 gi|529076876|ref|YP_008375879.1| - 0.18 11.4 4.7 1.1 9.0 1.5 2.6 2 1 0 2 2 2 0 Transcription elongation factor Elf1 like DUF3268 PF11672.3 gi|529076876|ref|YP_008375879.1| - 0.19 11.7 1.0 1 9.5 0.3 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3268) zf-IS66 PF13005.2 gi|529076876|ref|YP_008375879.1| - 0.2 11.6 5.3 12 5.9 0.0 3.2 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 zf-UBP PF02148.14 gi|529076876|ref|YP_008375879.1| - 0.2 11.7 3.2 9.4 6.4 0.1 2.3 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein TerY-C PF15616.1 gi|529076876|ref|YP_008375879.1| - 0.21 11.5 5.0 0.069 13.0 0.8 1.9 1 1 1 2 2 2 0 TerY-C metal binding domain DUF4379 PF14311.1 gi|529076876|ref|YP_008375879.1| - 0.21 11.4 8.9 0.87 9.4 0.3 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4379) UPF0547 PF10571.4 gi|529076876|ref|YP_008375879.1| - 0.22 11.2 8.6 1.9 8.2 0.1 2.8 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 Baculo_LEF5_C PF11792.3 gi|529076876|ref|YP_008375879.1| - 0.32 10.4 0.1 0.32 10.4 0.1 2.0 3 0 0 3 3 1 0 Baculoviridae late expression factor 5 C-terminal domain Zn-ribbon_8 PF09723.5 gi|529076876|ref|YP_008375879.1| - 0.4 10.6 10.8 2.7 8.0 0.6 3.2 2 1 0 3 3 3 0 Zinc ribbon domain DUF2296 PF10058.4 gi|529076876|ref|YP_008375879.1| - 0.46 10.2 2.3 33 4.3 0.1 3.1 3 0 0 3 3 3 0 Predicted integral membrane metal-binding protein (DUF2296) zf-RING_4 PF14570.1 gi|529076876|ref|YP_008375879.1| - 0.66 9.6 5.2 3.7 7.2 0.1 2.5 3 0 0 3 3 2 0 RING/Ubox like zinc-binding domain zf-TFIIB PF13453.1 gi|529076876|ref|YP_008375879.1| - 0.86 8.8 5.5 3.8 6.7 1.6 2.6 2 1 0 2 2 2 0 Transcription factor zinc-finger zinc_ribbon_4 PF13717.1 gi|529076876|ref|YP_008375879.1| - 1.3 8.7 10.1 10 5.9 4.6 2.9 2 1 1 3 3 3 0 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|529076876|ref|YP_008375879.1| - 1.4 8.4 7.2 18 4.9 0.1 3.2 3 0 0 3 3 3 0 A2L zinc ribbon domain zinc_ribbon_5 PF13719.1 gi|529076876|ref|YP_008375879.1| - 1.6 8.4 10.1 9.8 5.8 4.5 2.9 2 1 0 2 2 2 0 zinc-ribbon domain CpXC PF14353.1 gi|529076876|ref|YP_008375879.1| - 1.8 8.5 6.2 37 4.2 0.2 3.0 2 1 1 3 3 3 0 CpXC protein Nudix_N_2 PF14803.1 gi|529076876|ref|YP_008375879.1| - 3.1 7.5 11.8 11 5.8 3.7 3.2 2 1 1 3 3 3 0 Nudix N-terminal zf-trcl PF13451.1 gi|529076876|ref|YP_008375879.1| - 4 7.1 7.9 21 4.8 0.1 3.4 4 0 0 4 4 3 0 Probable zinc-binding domain zf-NADH-PPase PF09297.6 gi|529076876|ref|YP_008375879.1| - 4.6 6.8 10.8 13 5.4 0.2 3.4 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain RNHCP PF12647.2 gi|529076876|ref|YP_008375879.1| - 8.3 6.3 7.5 15 5.4 0.3 2.9 2 1 1 3 3 3 0 RNHCP domain DUF872 PF05915.7 gi|529076877|ref|YP_008375880.1| - 0.11 12.3 0.5 0.4 10.5 0.4 1.9 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF872) Oxidored_q2 PF00420.19 gi|529076877|ref|YP_008375880.1| - 0.24 11.0 6.3 0.055 13.0 0.5 2.1 2 0 0 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Virul_fac_BrkB PF03631.10 gi|529076877|ref|YP_008375880.1| - 1.4 8.1 17.3 0.33 10.2 9.7 1.6 1 1 0 1 1 1 0 Virulence factor BrkB DUF3040 PF11239.3 gi|529076877|ref|YP_008375880.1| - 3.8 7.6 15.9 0.79 9.8 3.7 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF3040) Met_10 PF02475.11 gi|529076879|ref|YP_008375882.1| - 1.2e-59 201.2 0.0 1.5e-59 200.9 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|529076879|ref|YP_008375882.1| - 2e-09 37.4 1.4 4e-09 36.5 0.1 2.1 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|529076879|ref|YP_008375882.1| - 2.3e-09 37.7 0.5 1.7e-08 35.0 0.0 2.4 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|529076879|ref|YP_008375882.1| - 3.6e-08 33.1 0.0 5.4e-08 32.5 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.9 gi|529076879|ref|YP_008375882.1| - 1.1e-07 31.3 0.0 2.4e-07 30.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|529076879|ref|YP_008375882.1| - 8.5e-07 28.6 0.0 1.4e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|529076879|ref|YP_008375882.1| - 2.2e-05 24.1 0.0 3.7e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 PrmA PF06325.8 gi|529076879|ref|YP_008375882.1| - 0.00055 19.1 0.0 0.00084 18.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_24 PF13578.1 gi|529076879|ref|YP_008375882.1| - 0.0019 18.9 0.4 0.011 16.5 0.1 2.3 2 0 0 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|529076879|ref|YP_008375882.1| - 0.002 17.5 0.0 0.0038 16.6 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_23 PF13489.1 gi|529076879|ref|YP_008375882.1| - 0.0025 17.5 0.0 0.0049 16.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|529076879|ref|YP_008375882.1| - 0.0059 17.0 0.0 0.017 15.6 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain TRM PF02005.11 gi|529076879|ref|YP_008375882.1| - 0.026 13.4 0.1 0.043 12.7 0.0 1.2 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_25 PF13649.1 gi|529076879|ref|YP_008375882.1| - 0.032 14.5 0.0 0.076 13.3 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain MethyltransfD12 PF02086.10 gi|529076879|ref|YP_008375882.1| - 0.14 11.5 0.0 0.2 11.0 0.0 1.2 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase TP_methylase PF00590.15 gi|529076880|ref|YP_008375883.1| - 7.2e-23 81.4 1.8 8.2e-23 81.2 0.6 1.5 2 0 0 2 2 2 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Exosortase_EpsH PF09721.5 gi|529076881|ref|YP_008375884.1| - 4.5e-39 134.2 19.3 1.5e-38 132.5 13.4 1.7 1 1 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) VanZ PF04892.7 gi|529076881|ref|YP_008375884.1| - 0.63 10.0 6.6 1.4 8.8 1.2 2.5 2 1 0 2 2 2 0 VanZ like family DUF2754 PF10953.3 gi|529076882|ref|YP_008375885.1| - 0.27 11.3 6.6 0.37 10.8 4.6 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2754) DUF202 PF02656.10 gi|529076882|ref|YP_008375885.1| - 7.4 6.8 6.5 9.2 6.5 4.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF202) Glyoxalase_2 PF12681.2 gi|529076883|ref|YP_008375886.1| - 2.8e-24 85.8 5.2 3.7e-14 53.2 0.4 2.1 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase PF00903.20 gi|529076883|ref|YP_008375886.1| - 4e-23 81.8 3.8 2.9e-14 53.1 0.5 2.2 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|529076883|ref|YP_008375886.1| - 1.6e-12 47.3 4.3 1.3e-05 25.1 0.6 3.7 1 1 3 4 4 4 3 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|529076883|ref|YP_008375886.1| - 2.4e-06 27.5 0.0 0.14 12.0 0.0 3.4 2 1 0 2 2 2 2 Glyoxalase-like domain MMR_HSR1 PF01926.18 gi|529076885|ref|YP_008375888.1| - 1.1e-21 76.9 0.0 2.4e-21 75.8 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|529076885|ref|YP_008375888.1| - 5.5e-15 54.9 0.1 1.1e-14 54.0 0.0 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|529076885|ref|YP_008375888.1| - 2.8e-14 52.6 1.4 3.6e-13 49.0 0.0 2.2 1 1 0 2 2 2 1 Ferrous iron transport protein B Dynamin_N PF00350.18 gi|529076885|ref|YP_008375888.1| - 1.6e-06 28.0 0.0 0.063 13.0 0.0 2.6 1 1 1 2 2 2 2 Dynamin family ArgK PF03308.11 gi|529076885|ref|YP_008375888.1| - 0.0015 17.3 0.1 0.007 15.1 0.0 2.1 2 0 0 2 2 2 1 ArgK protein GTP_EFTU PF00009.22 gi|529076885|ref|YP_008375888.1| - 0.002 17.5 0.1 0.18 11.2 0.0 2.9 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain DUF258 PF03193.11 gi|529076885|ref|YP_008375888.1| - 0.004 16.3 0.0 0.011 14.9 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function, DUF258 Miro PF08477.8 gi|529076885|ref|YP_008375888.1| - 0.0067 16.9 0.0 0.027 14.9 0.0 2.1 2 1 0 2 2 1 1 Miro-like protein AAA_28 PF13521.1 gi|529076885|ref|YP_008375888.1| - 0.019 14.9 0.2 0.05 13.5 0.0 1.8 2 0 0 2 2 1 0 AAA domain ThiS PF02597.15 gi|529076885|ref|YP_008375888.1| - 0.032 14.6 0.3 0.26 11.7 0.0 2.6 3 0 0 3 3 2 0 ThiS family AAA_29 PF13555.1 gi|529076885|ref|YP_008375888.1| - 0.051 13.1 0.2 0.15 11.6 0.1 1.8 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|529076885|ref|YP_008375888.1| - 0.052 13.8 0.0 0.19 12.0 0.0 1.9 2 0 0 2 2 2 0 ABC transporter cobW PF02492.14 gi|529076885|ref|YP_008375888.1| - 0.055 12.9 1.2 2.5 7.5 0.0 2.6 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain Arf PF00025.16 gi|529076885|ref|YP_008375888.1| - 0.059 12.6 0.1 0.91 8.7 0.0 2.2 2 0 0 2 2 2 0 ADP-ribosylation factor family MobB PF03205.9 gi|529076885|ref|YP_008375888.1| - 0.074 12.7 0.0 0.16 11.6 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ATP_bind_1 PF03029.12 gi|529076885|ref|YP_008375888.1| - 0.085 12.3 0.0 14 5.1 0.0 2.5 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_16 PF13191.1 gi|529076885|ref|YP_008375888.1| - 0.087 12.8 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AIG1 PF04548.11 gi|529076885|ref|YP_008375888.1| - 0.1 11.7 0.0 0.18 10.8 0.0 1.4 1 0 0 1 1 1 0 AIG1 family AAA_17 PF13207.1 gi|529076885|ref|YP_008375888.1| - 0.14 12.9 2.6 0.23 12.2 0.3 2.7 2 1 0 2 2 1 0 AAA domain AAA_18 PF13238.1 gi|529076885|ref|YP_008375888.1| - 1.5 9.1 6.2 1 9.6 1.2 2.8 2 1 0 2 2 1 0 AAA domain NIL PF09383.5 gi|529076886|ref|YP_008375889.1| - 0.13 11.8 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 NIL domain Ribosomal_L11 PF00298.14 gi|529076887|ref|YP_008375890.1| - 8.2e-21 73.9 0.0 1.2e-20 73.3 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L11_N PF03946.9 gi|529076887|ref|YP_008375890.1| - 4.7e-17 61.2 0.4 7.4e-17 60.5 0.1 1.5 2 0 0 2 2 2 1 Ribosomal protein L11, N-terminal domain HATPase_c PF02518.21 gi|529076888|ref|YP_008375891.1| - 4.1e-15 55.4 0.1 7.2e-15 54.6 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.20 gi|529076888|ref|YP_008375891.1| - 1.2e-06 28.5 0.9 4.2e-06 26.8 0.2 2.3 2 0 0 2 2 2 1 HAMP domain HATPase_c_2 PF13581.1 gi|529076888|ref|YP_008375891.1| - 4.6e-06 26.4 0.1 1.2e-05 25.1 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA PF00512.20 gi|529076888|ref|YP_008375891.1| - 0.26 11.2 3.7 0.33 10.9 0.9 2.4 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain Trp_repressor PF01371.14 gi|529076888|ref|YP_008375891.1| - 0.51 10.2 3.0 0.35 10.8 0.1 2.2 3 0 0 3 3 3 0 Trp repressor protein Ribosomal_L1 PF00687.16 gi|529076889|ref|YP_008375892.1| - 3.7e-43 147.4 0.0 4.5e-43 147.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L10 PF00466.15 gi|529076890|ref|YP_008375893.1| - 6.8e-21 74.0 0.0 1.1e-20 73.3 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L10 CobT PF06213.7 gi|529076890|ref|YP_008375893.1| - 0.029 13.5 13.3 0.098 11.7 8.9 1.8 2 0 0 2 2 2 0 Cobalamin biosynthesis protein CobT DUF473 PF04322.7 gi|529076890|ref|YP_008375893.1| - 0.081 12.5 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF473) RNA_pol_3_Rpc31 PF11705.3 gi|529076890|ref|YP_008375893.1| - 1.6 8.5 12.6 2.3 8.1 8.7 1.3 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 Ribosomal_60s PF00428.14 gi|529076891|ref|YP_008375894.1| - 3.2e-12 46.6 26.9 5.1e-12 46.0 18.7 1.4 1 1 0 1 1 1 1 60s Acidic ribosomal protein NOA36 PF06524.7 gi|529076891|ref|YP_008375894.1| - 0.29 10.3 11.3 0.32 10.1 7.8 1.1 1 0 0 1 1 1 0 NOA36 protein Cwf_Cwc_15 PF04889.7 gi|529076891|ref|YP_008375894.1| - 0.52 9.9 11.0 0.57 9.8 7.6 1.1 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein DUF2457 PF10446.4 gi|529076891|ref|YP_008375894.1| - 0.59 8.7 17.0 0.64 8.6 11.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) RRN3 PF05327.6 gi|529076891|ref|YP_008375894.1| - 0.75 7.8 6.3 0.93 7.5 4.4 1.1 1 0 0 1 1 1 0 RNA polymerase I specific transcription initiation factor RRN3 CDC45 PF02724.9 gi|529076891|ref|YP_008375894.1| - 1.4 6.8 9.0 1.5 6.7 6.3 1.1 1 0 0 1 1 1 0 CDC45-like protein Daxx PF03344.10 gi|529076891|ref|YP_008375894.1| - 2.5 6.4 12.3 2.4 6.5 8.5 1.1 1 0 0 1 1 1 0 Daxx Family TFIIF_alpha PF05793.7 gi|529076891|ref|YP_008375894.1| - 3.2 6.0 10.5 3.4 5.9 7.3 1.1 1 0 0 1 1 1 0 Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) CENP-T PF15511.1 gi|529076891|ref|YP_008375894.1| - 3.9 6.6 12.3 4.2 6.5 8.5 1.1 1 0 0 1 1 1 0 Centromere kinetochore component CENP-T ANAPC15 PF15243.1 gi|529076891|ref|YP_008375894.1| - 8.8 6.4 13.6 16 5.6 9.4 1.6 1 0 0 1 1 1 0 Anaphase-promoting complex subunit 15 IU_nuc_hydro PF01156.14 gi|529076892|ref|YP_008375895.1| - 4.1e-72 243.0 5.0 5.1e-72 242.7 3.4 1.0 1 0 0 1 1 1 1 Inosine-uridine preferring nucleoside hydrolase PfkB PF00294.19 gi|529076893|ref|YP_008375896.1| - 8.1e-54 182.7 6.6 9.1e-54 182.6 4.6 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|529076893|ref|YP_008375896.1| - 2.2e-05 23.7 0.1 3.3e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Lactamase_B PF00753.22 gi|529076894|ref|YP_008375897.1| - 7.7e-20 71.3 9.2 1.3e-19 70.6 6.3 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.15 gi|529076894|ref|YP_008375897.1| - 1.6e-08 34.9 0.0 3.1e-08 33.9 0.0 1.5 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B_2 PF12706.2 gi|529076894|ref|YP_008375897.1| - 0.0043 16.6 0.5 0.01 15.4 0.4 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain DUF4341 PF14241.1 gi|529076895|ref|YP_008375898.1| - 2.6e-13 49.4 7.2 8e-12 44.6 0.8 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF4341) Sulf_transp PF04143.9 gi|529076895|ref|YP_008375898.1| - 4e-12 45.9 6.2 4e-12 45.9 4.3 2.8 3 0 0 3 3 3 2 Sulphur transport DUF161 PF02588.10 gi|529076895|ref|YP_008375898.1| - 8.6 6.7 12.1 0.6 10.4 0.3 3.1 3 1 0 3 3 3 0 Uncharacterized BCR, YitT family COG1284 Sulf_transp PF04143.9 gi|529076896|ref|YP_008375899.1| - 5.3e-10 39.1 10.5 5.3e-10 39.1 7.2 2.9 3 0 0 3 3 3 2 Sulphur transport CopD PF05425.8 gi|529076896|ref|YP_008375899.1| - 0.68 10.1 5.9 0.18 12.0 1.4 1.9 2 0 0 2 2 2 0 Copper resistance protein D DUF624 PF04854.9 gi|529076896|ref|YP_008375899.1| - 1.5 8.7 4.6 11 5.9 0.2 2.8 2 1 0 2 2 2 0 Protein of unknown function, DUF624 PHO4 PF01384.15 gi|529076897|ref|YP_008375900.1| - 1.2e-34 119.4 32.3 1.2e-34 119.4 22.4 1.6 1 1 0 1 1 1 1 Phosphate transporter family Usp PF00582.21 gi|529076898|ref|YP_008375901.1| - 1.1e-39 135.8 0.3 4.4e-22 78.7 0.0 2.2 2 0 0 2 2 2 2 Universal stress protein family TauE PF01925.14 gi|529076900|ref|YP_008375903.1| - 2e-36 125.6 24.2 2e-36 125.6 16.8 1.7 1 1 0 1 1 1 1 Sulfite exporter TauE/SafE DPRP PF04244.8 gi|529076901|ref|YP_008375904.1| - 5.2e-54 183.1 0.0 8.2e-54 182.4 0.0 1.4 1 0 0 1 1 1 1 Deoxyribodipyrimidine photo-lyase-related protein FAD_binding_7 PF03441.9 gi|529076901|ref|YP_008375904.1| - 3e-11 43.0 0.1 5.3e-11 42.2 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase FAM117 PF15388.1 gi|529076902|ref|YP_008375905.1| - 0.093 11.9 0.0 0.093 11.9 0.0 1.1 1 0 0 1 1 1 0 Protein Family FAM117 MttA_Hcf106 PF02416.11 gi|529076903|ref|YP_008375906.1| - 1.1e-12 46.8 0.0 1.2e-12 46.7 0.0 1.2 1 0 0 1 1 1 1 mttA/Hcf106 family AhpC-TSA PF00578.16 gi|529076904|ref|YP_008375907.1| - 6.7e-34 116.2 0.0 7.8e-34 116.0 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|529076904|ref|YP_008375907.1| - 8.6e-25 86.9 0.0 9.9e-25 86.7 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|529076904|ref|YP_008375907.1| - 8.1e-05 22.5 0.1 0.011 15.6 0.0 2.1 2 0 0 2 2 2 2 AhpC/TSA antioxidant enzyme DUF899 PF05988.7 gi|529076904|ref|YP_008375907.1| - 0.011 15.1 0.0 0.015 14.7 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) DUF3103 PF11301.3 gi|529076904|ref|YP_008375907.1| - 0.015 14.0 0.2 0.02 13.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3103) HD PF01966.17 gi|529076905|ref|YP_008375908.1| - 9.4e-09 35.3 2.3 2e-08 34.2 1.0 2.0 2 0 0 2 2 2 1 HD domain Tom22 PF04281.8 gi|529076906|ref|YP_008375909.1| - 4.6 6.7 8.3 5.3 6.5 5.8 1.1 1 0 0 1 1 1 0 Mitochondrial import receptor subunit Tom22 SurE PF01975.12 gi|529076907|ref|YP_008375910.1| - 4.5e-46 156.6 0.2 5.9e-46 156.2 0.1 1.1 1 0 0 1 1 1 1 Survival protein SurE TraI_2 PF07514.6 gi|529076907|ref|YP_008375910.1| - 0.089 11.5 0.0 0.13 10.9 0.0 1.2 1 0 0 1 1 1 0 Putative helicase Methyltransf_23 PF13489.1 gi|529076908|ref|YP_008375911.1| - 4.8e-13 49.1 0.0 3.2e-12 46.4 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|529076908|ref|YP_008375911.1| - 1e-09 38.7 0.0 2.2e-09 37.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|529076908|ref|YP_008375911.1| - 6.2e-07 29.9 0.1 1.9e-06 28.4 0.1 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|529076908|ref|YP_008375911.1| - 4.8e-06 26.9 0.0 1.1e-05 25.8 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|529076908|ref|YP_008375911.1| - 4.8e-06 26.2 0.0 1.3e-05 24.7 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Rsm22 PF09243.5 gi|529076908|ref|YP_008375911.1| - 1.4e-05 24.2 0.0 2.4e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Mitochondrial small ribosomal subunit Rsm22 Methyltransf_26 PF13659.1 gi|529076908|ref|YP_008375911.1| - 0.0028 17.6 0.2 0.0065 16.4 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|529076908|ref|YP_008375911.1| - 0.0062 15.9 0.0 0.013 14.8 0.0 1.4 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW DREV PF05219.7 gi|529076908|ref|YP_008375911.1| - 0.031 13.1 0.0 0.052 12.4 0.0 1.3 1 0 0 1 1 1 0 DREV methyltransferase AP_endonuc_2 PF01261.19 gi|529076908|ref|YP_008375911.1| - 0.053 12.7 0.1 0.23 10.7 0.0 2.0 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel GidB PF02527.10 gi|529076908|ref|YP_008375911.1| - 0.16 11.0 0.0 0.44 9.6 0.0 1.6 1 1 0 1 1 1 0 rRNA small subunit methyltransferase G PDH PF02153.12 gi|529076909|ref|YP_008375912.1| - 5e-13 48.5 0.4 5.1e-12 45.2 0.3 1.9 1 1 0 1 1 1 1 Prephenate dehydrogenase ApbA PF02558.11 gi|529076909|ref|YP_008375912.1| - 0.0088 15.4 0.1 0.032 13.6 0.0 1.9 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA GFO_IDH_MocA PF01408.17 gi|529076909|ref|YP_008375912.1| - 0.041 14.3 0.2 0.16 12.5 0.0 2.1 2 1 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.12 gi|529076909|ref|YP_008375912.1| - 0.084 13.3 0.0 0.23 11.8 0.0 1.8 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent CoA_binding_2 PF13380.1 gi|529076909|ref|YP_008375912.1| - 0.11 12.6 0.0 0.29 11.3 0.0 1.8 1 0 0 1 1 1 0 CoA binding domain FAA_hydrolase PF01557.13 gi|529076910|ref|YP_008375913.1| - 1.8e-64 217.1 0.2 2.3e-64 216.8 0.1 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Rad50_zn_hook PF04423.9 gi|529076911|ref|YP_008375914.1| - 0.017 14.5 0.1 0.026 13.9 0.1 1.3 1 0 0 1 1 1 0 Rad50 zinc hook motif Zn-ribbon_8 PF09723.5 gi|529076911|ref|YP_008375914.1| - 0.14 12.1 0.0 0.22 11.4 0.0 1.5 1 0 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|529076911|ref|YP_008375914.1| - 0.21 11.1 1.4 0.35 10.4 0.1 1.9 2 0 0 2 2 2 0 zinc-ribbon domain Prok-RING_4 PF14447.1 gi|529076911|ref|YP_008375914.1| - 0.23 11.0 3.4 0.34 10.4 0.4 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 4 HMG-CoA_red PF00368.13 gi|529076912|ref|YP_008375915.1| - 1.1e-136 455.4 2.8 1.2e-136 455.2 1.9 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase RDD PF06271.7 gi|529076913|ref|YP_008375916.1| - 0.12 12.2 2.3 0.14 12.0 1.6 1.1 1 0 0 1 1 1 0 RDD family HTH_41 PF14502.1 gi|529076915|ref|YP_008375918.1| - 0.0039 16.7 0.0 0.009 15.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|529076915|ref|YP_008375918.1| - 0.052 13.2 0.3 0.17 11.5 0.0 1.9 2 1 0 2 2 2 0 MarR family Rrf2 PF02082.15 gi|529076915|ref|YP_008375918.1| - 0.06 13.4 0.0 0.16 12.0 0.0 1.7 2 0 0 2 2 2 0 Transcriptional regulator TrmB PF01978.14 gi|529076915|ref|YP_008375918.1| - 0.086 12.5 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB zinc_ribbon_5 PF13719.1 gi|529076915|ref|YP_008375918.1| - 0.28 10.7 1.8 7 6.3 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|529076915|ref|YP_008375918.1| - 0.41 10.3 1.9 7.8 6.2 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Acetyltransf_1 PF00583.19 gi|529076916|ref|YP_008375919.1| - 7.2e-17 61.1 0.5 1.1e-16 60.6 0.3 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|529076916|ref|YP_008375919.1| - 8e-13 48.3 0.0 1.1e-12 47.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|529076916|ref|YP_008375919.1| - 2.2e-12 47.1 0.0 2.7e-12 46.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_5 PF13444.1 gi|529076916|ref|YP_008375919.1| - 3.9e-06 27.3 0.3 9.3e-06 26.1 0.0 1.8 1 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|529076916|ref|YP_008375919.1| - 8.1e-05 22.4 0.3 0.00033 20.5 0.2 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|529076916|ref|YP_008375919.1| - 0.00045 19.9 0.2 0.001 18.7 0.2 1.6 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|529076916|ref|YP_008375919.1| - 0.00055 19.9 0.0 0.00078 19.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|529076916|ref|YP_008375919.1| - 0.00062 19.5 0.1 0.0012 18.6 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase DUF3749 PF12568.3 gi|529076916|ref|YP_008375919.1| - 0.074 12.6 0.0 0.096 12.2 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Iso_dh PF00180.15 gi|529076917|ref|YP_008375920.1| - 2e-101 339.4 0.0 3e-101 338.8 0.0 1.2 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Thioredoxin_4 PF13462.1 gi|529076918|ref|YP_008375921.1| - 4.4e-30 104.8 0.0 5.6e-30 104.4 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin DSBA PF01323.15 gi|529076918|ref|YP_008375921.1| - 7.8e-11 41.8 0.7 6.2e-09 35.7 0.5 2.1 1 1 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_2 PF13098.1 gi|529076918|ref|YP_008375921.1| - 0.016 15.3 0.0 0.14 12.3 0.0 2.1 1 1 0 1 1 1 0 Thioredoxin-like domain Thioredoxin_3 PF13192.1 gi|529076918|ref|YP_008375921.1| - 0.049 13.4 0.1 0.14 11.9 0.0 1.7 2 0 0 2 2 2 0 Thioredoxin domain TAT_signal PF10518.4 gi|529076918|ref|YP_008375921.1| - 1.2 9.3 5.2 2.2 8.4 3.6 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Trm56 PF01994.11 gi|529076919|ref|YP_008375922.1| - 2.5e-45 153.0 0.0 3.2e-45 152.7 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 TFIIE_alpha PF02002.12 gi|529076920|ref|YP_008375923.1| - 1.2e-18 66.5 0.0 2e-18 65.8 0.0 1.4 1 0 0 1 1 1 1 TFIIE alpha subunit Zn-ribbon_8 PF09723.5 gi|529076920|ref|YP_008375923.1| - 0.0014 18.5 4.2 0.018 14.9 1.0 2.1 1 1 1 2 2 2 2 Zinc ribbon domain Sigma70_r3 PF04539.11 gi|529076920|ref|YP_008375923.1| - 0.0026 17.6 0.0 0.0055 16.5 0.0 1.6 1 0 0 1 1 1 1 Sigma-70 region 3 Rad50_zn_hook PF04423.9 gi|529076920|ref|YP_008375923.1| - 0.026 13.9 0.2 0.47 9.9 0.0 2.5 2 0 0 2 2 2 0 Rad50 zinc hook motif zf-C2H2_6 PF13912.1 gi|529076920|ref|YP_008375923.1| - 0.027 14.3 0.9 1.3 9.0 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger zinc_ribbon_2 PF13240.1 gi|529076920|ref|YP_008375923.1| - 0.029 13.8 0.9 1.6 8.3 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|529076920|ref|YP_008375923.1| - 0.031 13.5 5.5 0.38 10.1 3.4 2.6 1 1 1 2 2 2 0 TFIIB zinc-binding HypA PF01155.14 gi|529076920|ref|YP_008375923.1| - 0.035 13.7 0.1 0.053 13.2 0.0 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-HYPF PF07503.7 gi|529076920|ref|YP_008375923.1| - 0.041 13.2 0.1 3.1 7.2 0.0 2.4 2 0 0 2 2 2 0 HypF finger DZR PF12773.2 gi|529076920|ref|YP_008375923.1| - 0.042 13.6 0.1 0.077 12.8 0.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon PhnA_Zn_Ribbon PF08274.7 gi|529076920|ref|YP_008375923.1| - 0.052 13.3 1.4 2.6 7.9 0.0 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zinc-ribbons_6 PF07191.7 gi|529076920|ref|YP_008375923.1| - 0.08 12.7 0.1 0.18 11.6 0.1 1.5 1 1 0 1 1 1 0 zinc-ribbons DNA_ligase_ZBD PF03119.11 gi|529076920|ref|YP_008375923.1| - 0.089 12.5 0.1 0.17 11.5 0.1 1.5 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain zf-ribbon_3 PF13248.1 gi|529076920|ref|YP_008375923.1| - 0.17 11.1 1.1 5 6.4 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|529076920|ref|YP_008375923.1| - 0.2 11.4 1.1 1.7 8.4 0.1 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain TFIIS_C PF01096.13 gi|529076920|ref|YP_008375923.1| - 0.22 11.1 0.8 9.1 6.0 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-C2H2 PF00096.21 gi|529076920|ref|YP_008375923.1| - 0.28 11.5 1.1 14 6.2 0.0 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type HSBP1 PF06825.7 gi|529076920|ref|YP_008375923.1| - 0.5 9.9 5.2 0.15 11.6 1.5 1.7 2 0 0 2 2 2 0 Heat shock factor binding protein 1 zf-Mss51 PF13824.1 gi|529076920|ref|YP_008375923.1| - 0.6 9.9 3.1 7 6.5 1.9 2.6 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF1610 PF07754.6 gi|529076920|ref|YP_008375923.1| - 2.3 8.4 6.4 6.7 6.9 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) DUF2110 PF09883.4 gi|529076921|ref|YP_008375924.1| - 3.4e-86 288.5 0.0 4e-86 288.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2110) NDUF_B8 PF05821.6 gi|529076921|ref|YP_008375924.1| - 0.086 12.4 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASHI or NDUFB8) SKG6 PF08693.5 gi|529076922|ref|YP_008375925.1| - 0.072 12.4 1.7 0.17 11.2 1.2 1.6 1 0 0 1 1 1 0 Transmembrane alpha-helix domain MoCF_biosynth PF00994.19 gi|529076923|ref|YP_008375926.1| - 5.3e-36 123.1 0.3 8.3e-36 122.5 0.2 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain Lipase_GDSL_2 PF13472.1 gi|529076923|ref|YP_008375926.1| - 0.005 16.9 0.5 0.017 15.2 0.3 1.9 2 0 0 2 2 2 1 GDSL-like Lipase/Acylhydrolase family B12-binding PF02310.14 gi|529076923|ref|YP_008375926.1| - 0.025 14.4 1.3 0.14 12.0 0.7 2.2 1 1 1 2 2 2 0 B12 binding domain DUF3773 PF12608.3 gi|529076923|ref|YP_008375926.1| - 0.037 14.0 2.3 18 5.4 0.0 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF3773) Aminotran_5 PF00266.14 gi|529076923|ref|YP_008375926.1| - 0.06 12.0 0.1 0.093 11.4 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-V CTDII PF01556.13 gi|529076926|ref|YP_008375929.1| - 1.8e-31 107.8 0.0 1.1e-22 79.7 0.0 3.0 3 0 0 3 3 3 2 DnaJ C terminal domain DnaJ PF00226.26 gi|529076926|ref|YP_008375929.1| - 2.3e-23 81.6 4.9 2.5e-23 81.5 2.6 1.7 2 0 0 2 2 2 1 DnaJ domain DnaJ_CXXCXGXG PF00684.14 gi|529076926|ref|YP_008375929.1| - 2.4e-15 56.3 15.0 4.1e-15 55.5 10.4 1.4 1 0 0 1 1 1 1 DnaJ central domain A2L_zn_ribbon PF08792.5 gi|529076926|ref|YP_008375929.1| - 0.0062 15.9 6.4 0.98 8.9 0.1 3.3 2 1 1 3 3 3 2 A2L zinc ribbon domain DZR PF12773.2 gi|529076926|ref|YP_008375929.1| - 0.016 14.9 12.2 0.043 13.6 8.5 1.7 1 1 0 1 1 1 0 Double zinc ribbon RPT PF13446.1 gi|529076926|ref|YP_008375929.1| - 0.018 14.4 0.1 0.038 13.3 0.1 1.5 1 0 0 1 1 1 0 A repeated domain in UCH-protein GRP PF07172.6 gi|529076926|ref|YP_008375929.1| - 0.04 14.4 11.9 0.13 12.7 8.2 1.9 1 0 0 1 1 1 0 Glycine rich protein family DUF3353 PF11833.3 gi|529076926|ref|YP_008375929.1| - 0.27 10.6 2.0 0.48 9.8 0.8 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3353) HhH-GPD PF00730.20 gi|529076927|ref|YP_008375930.1| - 9.4e-14 51.6 0.0 1.2e-13 51.2 0.0 1.1 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH_5 PF14520.1 gi|529076927|ref|YP_008375930.1| - 0.00074 19.6 0.1 0.024 14.8 0.0 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.4 gi|529076927|ref|YP_008375930.1| - 0.08 12.5 0.0 0.16 11.5 0.0 1.6 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda Hexapep PF00132.19 gi|529076928|ref|YP_008375931.1| - 1.6e-10 39.9 8.5 1.7e-06 27.2 0.2 3.5 3 1 1 4 4 4 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|529076928|ref|YP_008375931.1| - 3.5e-05 23.2 7.2 6.6e-05 22.3 0.4 2.9 2 1 0 2 2 2 1 Hexapeptide repeat of succinyl-transferase SATase_N PF06426.9 gi|529076928|ref|YP_008375931.1| - 0.0041 17.3 0.0 0.006 16.8 0.0 1.3 1 0 0 1 1 1 1 Serine acetyltransferase, N-terminal NikR_C PF08753.6 gi|529076929|ref|YP_008375932.1| - 2.5e-18 65.7 0.7 3.7e-18 65.1 0.5 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|529076929|ref|YP_008375932.1| - 1.3e-06 28.0 0.0 2.2e-06 27.2 0.0 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family Pro_CA PF00484.14 gi|529076930|ref|YP_008375933.1| - 1.2e-26 93.4 0.0 1.7e-26 93.0 0.0 1.1 1 0 0 1 1 1 1 Carbonic anhydrase HTH_24 PF13412.1 gi|529076931|ref|YP_008375934.1| - 2.8e-14 52.2 0.2 4.2e-14 51.6 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|529076931|ref|YP_008375934.1| - 4.2e-12 45.4 1.2 9.3e-12 44.2 0.7 1.7 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|529076931|ref|YP_008375934.1| - 5.9e-07 29.0 0.1 1.1e-06 28.1 0.1 1.5 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|529076931|ref|YP_008375934.1| - 1.9e-05 24.2 0.0 3.7e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|529076931|ref|YP_008375934.1| - 2.2e-05 23.9 0.0 4e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|529076931|ref|YP_008375934.1| - 6.6e-05 22.2 0.0 0.00012 21.4 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_DeoR PF08220.7 gi|529076931|ref|YP_008375934.1| - 0.00011 21.6 0.5 0.0096 15.4 0.1 2.4 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain Rrf2 PF02082.15 gi|529076931|ref|YP_008375934.1| - 0.00021 21.3 0.0 0.0007 19.6 0.0 1.7 2 0 0 2 2 2 1 Transcriptional regulator HTH_20 PF12840.2 gi|529076931|ref|YP_008375934.1| - 0.00028 20.6 0.0 0.00073 19.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|529076931|ref|YP_008375934.1| - 0.00029 20.7 0.0 0.00068 19.5 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.1 gi|529076931|ref|YP_008375934.1| - 0.00055 20.2 0.3 0.0091 16.2 0.0 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|529076931|ref|YP_008375934.1| - 0.00083 18.9 0.0 0.0015 18.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_23 PF13384.1 gi|529076931|ref|YP_008375934.1| - 0.0069 16.0 0.0 0.014 15.0 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain GntR PF00392.16 gi|529076931|ref|YP_008375934.1| - 0.0095 15.3 0.1 0.024 14.0 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_28 PF13518.1 gi|529076931|ref|YP_008375934.1| - 0.029 14.3 0.0 0.055 13.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.14 gi|529076931|ref|YP_008375934.1| - 0.029 14.0 0.0 0.072 12.8 0.0 1.7 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_Tnp_ISL3 PF13542.1 gi|529076931|ref|YP_008375934.1| - 0.034 13.3 0.0 0.077 12.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 MarR PF01047.17 gi|529076931|ref|YP_008375934.1| - 0.034 13.8 0.0 0.098 12.3 0.0 1.7 2 0 0 2 2 2 0 MarR family HTH_Crp_2 PF13545.1 gi|529076931|ref|YP_008375934.1| - 0.038 13.7 0.0 0.089 12.5 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_Mga PF08280.6 gi|529076931|ref|YP_008375934.1| - 0.038 13.7 0.0 0.064 13.0 0.0 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_1 PF00126.22 gi|529076931|ref|YP_008375934.1| - 0.044 13.5 0.1 0.086 12.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_10 PF04967.7 gi|529076931|ref|YP_008375934.1| - 0.046 13.3 0.1 0.081 12.5 0.1 1.3 1 0 0 1 1 1 0 HTH DNA binding domain HTH_12 PF08461.5 gi|529076931|ref|YP_008375934.1| - 0.11 12.2 0.3 0.47 10.2 0.2 2.2 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain Oxidored_q1 PF00361.15 gi|529076933|ref|YP_008375936.1| - 2.9e-34 118.5 8.6 2.9e-34 118.5 6.0 1.8 2 0 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|529076933|ref|YP_008375936.1| - 1.8e-06 27.3 0.0 6.9e-06 25.5 0.0 1.9 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus OCIA PF07051.6 gi|529076933|ref|YP_008375936.1| - 0.28 10.6 2.6 0.41 10.0 0.1 2.5 3 0 0 3 3 3 0 Ovarian carcinoma immunoreactive antigen (OCIA) DUF2309 PF10070.4 gi|529076934|ref|YP_008375937.1| - 5e-249 828.5 0.0 9.2e-249 827.7 0.0 1.4 1 1 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2309) DUF4414 PF14377.1 gi|529076934|ref|YP_008375937.1| - 0.24 11.3 1.3 0.52 10.2 0.1 2.2 3 1 0 3 3 3 0 Domain of unknown function (DUF4414) Hexapep PF00132.19 gi|529076935|ref|YP_008375938.1| - 4.6e-09 35.3 1.7 1.2e-08 34.1 0.5 2.2 3 0 0 3 3 3 1 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|529076935|ref|YP_008375938.1| - 4.4e-07 29.3 1.5 6.7e-07 28.7 0.3 1.9 2 0 0 2 2 2 1 Hexapeptide repeat of succinyl-transferase MS_channel PF00924.13 gi|529076936|ref|YP_008375939.1| - 6.5e-17 61.5 0.4 6.5e-17 61.5 0.3 2.3 2 1 1 3 3 3 1 Mechanosensitive ion channel TM_helix PF05552.7 gi|529076936|ref|YP_008375939.1| - 7.5e-06 25.5 3.3 0.0027 17.3 0.3 3.2 3 0 0 3 3 3 2 Conserved TM helix Fimbrial_PilY2 PF14481.1 gi|529076936|ref|YP_008375939.1| - 0.047 13.1 0.6 0.12 11.8 0.0 1.9 2 0 0 2 2 2 0 Type 4 fimbrial biogenesis protein PilY2 DisA_N PF02457.11 gi|529076937|ref|YP_008375940.1| - 4.3e-26 90.4 0.0 1.1e-25 89.1 0.0 1.7 2 0 0 2 2 2 1 DisA bacterial checkpoint controller nucleotide-binding Cellulase PF00150.13 gi|529076938|ref|YP_008375941.1| - 7e-28 97.6 0.1 9.5e-28 97.1 0.0 1.1 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) Dockerin_1 PF00404.13 gi|529076938|ref|YP_008375941.1| - 0.0037 16.9 8.0 0.0042 16.7 0.2 3.0 3 0 0 3 3 3 1 Dockerin type I repeat EF-hand_1 PF00036.27 gi|529076938|ref|YP_008375941.1| - 0.041 13.2 2.6 1.3 8.4 0.0 3.4 3 0 0 3 3 3 0 EF hand EF-hand_5 PF13202.1 gi|529076938|ref|YP_008375941.1| - 0.18 11.1 0.7 2.2 7.7 0.1 2.5 2 0 0 2 2 2 0 EF hand UCR_Fe-S_N PF10399.4 gi|529076938|ref|YP_008375941.1| - 0.2 10.8 2.7 0.41 9.8 1.9 1.5 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal EF-hand_6 PF13405.1 gi|529076938|ref|YP_008375941.1| - 0.31 11.0 1.6 1.6 8.8 0.0 2.9 3 0 0 3 3 3 0 EF-hand domain TAT_signal PF10518.4 gi|529076938|ref|YP_008375941.1| - 8.1 6.7 12.5 0.048 13.6 2.9 1.8 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence COX3 PF00510.13 gi|529076939|ref|YP_008375942.1| - 1.1e-35 123.3 16.2 2.5e-35 122.1 11.3 1.6 1 1 0 1 1 1 1 Cytochrome c oxidase subunit III DUF420 PF04238.7 gi|529076939|ref|YP_008375942.1| - 1.6 8.6 16.3 0.035 14.0 6.8 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF420) zf-C2H2 PF00096.21 gi|529076941|ref|YP_008375944.1| - 0.0033 17.6 0.0 0.0049 17.1 0.0 1.3 1 0 0 1 1 1 1 Zinc finger, C2H2 type zf-RING_3 PF14369.1 gi|529076941|ref|YP_008375944.1| - 0.03 14.3 0.5 0.05 13.6 0.4 1.3 1 0 0 1 1 1 0 zinc-finger zf-C2H2_4 PF13894.1 gi|529076941|ref|YP_008375944.1| - 0.045 14.1 0.1 0.073 13.4 0.0 1.3 1 0 0 1 1 1 0 C2H2-type zinc finger DNA_ligase_ZBD PF03119.11 gi|529076941|ref|YP_008375944.1| - 0.062 13.0 0.3 0.096 12.4 0.2 1.3 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain Rad50_zn_hook PF04423.9 gi|529076941|ref|YP_008375944.1| - 0.19 11.2 0.6 0.42 10.1 0.4 1.6 1 0 0 1 1 1 0 Rad50 zinc hook motif NAD_binding_2 PF03446.10 gi|529076942|ref|YP_008375945.1| - 2.1e-46 157.7 1.3 3e-46 157.2 0.9 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.1 gi|529076942|ref|YP_008375945.1| - 7.2e-26 90.6 0.0 1.3e-25 89.8 0.0 1.4 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.12 gi|529076942|ref|YP_008375945.1| - 2.9e-09 37.2 0.1 1.7e-08 34.7 0.0 2.1 1 1 1 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|529076942|ref|YP_008375945.1| - 1.9e-07 30.4 0.0 2.6e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|529076942|ref|YP_008375945.1| - 6.8e-05 22.2 0.0 0.00011 21.6 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 3HCDH_N PF02737.13 gi|529076942|ref|YP_008375945.1| - 0.00024 20.8 0.1 0.0004 20.0 0.0 1.6 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|529076942|ref|YP_008375945.1| - 0.0077 15.6 0.0 0.013 14.9 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Shikimate_DH PF01488.15 gi|529076942|ref|YP_008375945.1| - 0.0096 16.0 0.0 0.016 15.3 0.0 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Saccharop_dh PF03435.13 gi|529076942|ref|YP_008375945.1| - 0.0097 14.9 0.1 0.013 14.4 0.1 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|529076942|ref|YP_008375945.1| - 0.09 12.5 0.0 0.2 11.3 0.0 1.7 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PTPS PF01242.14 gi|529076943|ref|YP_008375946.1| - 0.034 13.8 0.1 0.13 11.9 0.1 1.8 1 1 0 1 1 1 0 6-pyruvoyl tetrahydropterin synthase Synaphin PF05835.7 gi|529076943|ref|YP_008375946.1| - 0.051 13.7 0.7 0.11 12.5 0.5 1.5 1 0 0 1 1 1 0 Synaphin protein T2SF PF00482.18 gi|529076943|ref|YP_008375946.1| - 0.081 12.8 0.0 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein F Abhydrolase_2 PF02230.11 gi|529076944|ref|YP_008375947.1| - 7.4e-19 68.0 0.0 1.1e-17 64.2 0.0 1.9 1 1 0 1 1 1 1 Phospholipase/Carboxylesterase Abhydrolase_6 PF12697.2 gi|529076944|ref|YP_008375947.1| - 1.1e-12 48.2 2.6 2.4e-09 37.4 0.8 2.1 1 1 1 2 2 2 2 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|529076944|ref|YP_008375947.1| - 3.9e-12 46.1 0.1 4.7e-12 45.8 0.1 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|529076944|ref|YP_008375947.1| - 1.3e-07 31.1 0.0 1.6e-07 30.8 0.0 1.2 1 0 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_1 PF00561.15 gi|529076944|ref|YP_008375947.1| - 3.7e-06 26.6 0.0 4.5e-06 26.3 0.0 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold Esterase_phd PF10503.4 gi|529076944|ref|YP_008375947.1| - 0.00015 21.1 0.6 0.00026 20.3 0.2 1.5 1 1 0 1 1 1 1 Esterase PHB depolymerase FSH1 PF03959.8 gi|529076944|ref|YP_008375947.1| - 0.0011 18.4 0.0 0.0012 18.3 0.0 1.2 1 0 0 1 1 1 1 Serine hydrolase (FSH1) PE-PPE PF08237.6 gi|529076944|ref|YP_008375947.1| - 0.0018 17.7 0.0 0.0029 17.0 0.0 1.3 1 0 0 1 1 1 1 PE-PPE domain Abhydrolase_3 PF07859.8 gi|529076944|ref|YP_008375947.1| - 0.0046 16.5 0.9 0.2 11.2 0.1 2.2 1 1 1 2 2 2 1 alpha/beta hydrolase fold Peptidase_S9 PF00326.16 gi|529076944|ref|YP_008375947.1| - 0.0085 15.3 0.1 1.4 8.0 0.0 2.4 3 0 0 3 3 3 1 Prolyl oligopeptidase family Cutinase PF01083.17 gi|529076944|ref|YP_008375947.1| - 0.039 13.6 0.1 0.059 13.1 0.1 1.3 1 0 0 1 1 1 0 Cutinase Esterase PF00756.15 gi|529076944|ref|YP_008375947.1| - 0.048 13.0 0.0 0.061 12.7 0.0 1.4 1 1 0 1 1 1 0 Putative esterase Hydrolase_4 PF12146.3 gi|529076944|ref|YP_008375947.1| - 0.084 12.7 0.0 13 5.7 0.0 2.4 2 0 0 2 2 2 0 Putative lysophospholipase TrmB PF01978.14 gi|529076945|ref|YP_008375948.1| - 0.0008 19.0 0.2 0.0011 18.5 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_36 PF13730.1 gi|529076945|ref|YP_008375948.1| - 0.045 13.8 0.0 0.068 13.3 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain GntR PF00392.16 gi|529076945|ref|YP_008375948.1| - 0.05 13.0 0.1 0.071 12.5 0.1 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF2540 PF10802.3 gi|529076945|ref|YP_008375948.1| - 0.062 12.9 0.0 0.097 12.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2540) HTH_27 PF13463.1 gi|529076945|ref|YP_008375948.1| - 0.063 13.6 0.0 0.085 13.1 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain TFIIE_alpha PF02002.12 gi|529076945|ref|YP_008375948.1| - 0.065 12.7 0.0 0.075 12.5 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit MarR PF01047.17 gi|529076945|ref|YP_008375948.1| - 0.081 12.6 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_11 PF08279.7 gi|529076945|ref|YP_008375948.1| - 0.11 12.1 0.0 0.15 11.7 0.0 1.2 1 0 0 1 1 1 0 HTH domain HTH_24 PF13412.1 gi|529076945|ref|YP_008375948.1| - 0.12 11.7 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_12 PF08461.5 gi|529076945|ref|YP_008375948.1| - 0.15 11.7 0.1 0.39 10.4 0.1 1.7 1 1 1 2 2 2 0 Ribonuclease R winged-helix domain Epimerase_2 PF02350.14 gi|529076946|ref|YP_008375949.1| - 0.022 13.5 0.2 0.024 13.3 0.2 1.0 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase SepZ PF06066.6 gi|529076946|ref|YP_008375949.1| - 0.071 13.1 1.3 0.095 12.7 0.9 1.2 1 0 0 1 1 1 0 SepZ NADH-u_ox-rdase PF10785.4 gi|529076946|ref|YP_008375949.1| - 1.6 9.0 4.6 3.4 7.9 0.4 2.2 1 1 1 2 2 2 0 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit ABC_tran PF00005.22 gi|529076947|ref|YP_008375950.1| - 5.4e-37 127.1 0.0 1.6e-19 70.5 0.0 2.8 2 1 0 2 2 2 2 ABC transporter SMC_N PF02463.14 gi|529076947|ref|YP_008375950.1| - 7.4e-13 48.2 3.7 0.001 18.3 0.0 4.2 4 0 0 4 4 4 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|529076947|ref|YP_008375950.1| - 7.5e-13 49.0 0.2 0.0093 15.9 0.0 4.2 3 1 1 4 4 4 3 AAA domain RLI PF04068.10 gi|529076947|ref|YP_008375950.1| - 2.8e-12 45.9 0.7 5.4e-12 45.0 0.5 1.5 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_17 PF13207.1 gi|529076947|ref|YP_008375950.1| - 1.3e-10 42.1 0.3 5.5e-06 27.1 0.0 3.0 2 2 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|529076947|ref|YP_008375950.1| - 4.5e-08 33.2 0.0 0.013 15.4 0.0 2.5 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|529076947|ref|YP_008375950.1| - 2.6e-07 30.8 0.0 0.0013 18.8 0.0 3.2 2 2 0 2 2 2 2 AAA domain AAA_18 PF13238.1 gi|529076947|ref|YP_008375950.1| - 9.5e-07 29.1 0.0 0.02 15.2 0.0 2.9 3 0 0 3 3 2 2 AAA domain AAA PF00004.24 gi|529076947|ref|YP_008375950.1| - 4.4e-06 26.9 0.0 0.18 12.0 0.0 2.8 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.17 gi|529076947|ref|YP_008375950.1| - 5.5e-06 26.5 0.0 0.068 13.3 0.0 2.6 2 0 0 2 2 2 2 RNA helicase NACHT PF05729.7 gi|529076947|ref|YP_008375950.1| - 3.1e-05 23.6 0.0 0.14 11.7 0.0 2.5 2 0 0 2 2 2 2 NACHT domain AAA_23 PF13476.1 gi|529076947|ref|YP_008375950.1| - 0.00015 22.1 0.1 0.76 10.0 0.0 2.3 2 0 0 2 2 2 2 AAA domain DUF258 PF03193.11 gi|529076947|ref|YP_008375950.1| - 0.00035 19.8 0.0 0.21 10.7 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function, DUF258 Rad17 PF03215.10 gi|529076947|ref|YP_008375950.1| - 0.00048 18.9 0.0 0.31 9.6 0.0 2.7 2 1 1 3 3 3 1 Rad17 cell cycle checkpoint protein Fer4 PF00037.22 gi|529076947|ref|YP_008375950.1| - 0.00049 19.5 1.3 0.00049 19.5 0.9 2.7 3 0 0 3 3 3 1 4Fe-4S binding domain RuvB_N PF05496.7 gi|529076947|ref|YP_008375950.1| - 0.00059 18.9 0.0 0.43 9.5 0.0 2.5 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus SbcCD_C PF13558.1 gi|529076947|ref|YP_008375950.1| - 0.00096 19.0 0.0 1.7 8.6 0.0 2.9 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|529076947|ref|YP_008375950.1| - 0.0014 18.1 0.9 1.8 8.1 0.0 2.6 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|529076947|ref|YP_008375950.1| - 0.0015 18.3 1.8 0.13 12.1 0.0 3.0 4 1 0 4 4 2 1 AAA domain MobB PF03205.9 gi|529076947|ref|YP_008375950.1| - 0.0016 18.1 0.0 0.65 9.7 0.0 2.5 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.1 gi|529076947|ref|YP_008375950.1| - 0.0017 18.0 0.4 0.54 10.0 0.0 3.2 3 0 0 3 3 3 1 Part of AAA domain AAA_14 PF13173.1 gi|529076947|ref|YP_008375950.1| - 0.0026 17.6 0.0 2.9 7.8 0.0 2.8 3 0 0 3 3 2 1 AAA domain NTPase_1 PF03266.10 gi|529076947|ref|YP_008375950.1| - 0.003 17.2 0.2 2.7 7.6 0.1 2.8 2 0 0 2 2 2 1 NTPase AAA_25 PF13481.1 gi|529076947|ref|YP_008375950.1| - 0.0032 16.8 6.0 0.36 10.2 0.3 3.5 3 1 0 3 3 3 2 AAA domain AAA_5 PF07728.9 gi|529076947|ref|YP_008375950.1| - 0.0048 16.6 0.0 0.76 9.4 0.0 3.1 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) AAA_24 PF13479.1 gi|529076947|ref|YP_008375950.1| - 0.006 16.1 0.1 2 7.9 0.0 2.3 2 0 0 2 2 2 1 AAA domain SRP54 PF00448.17 gi|529076947|ref|YP_008375950.1| - 0.0063 15.9 0.0 2.3 7.5 0.0 2.3 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain Fer4_6 PF12837.2 gi|529076947|ref|YP_008375950.1| - 0.0068 16.2 1.4 0.0068 16.2 0.9 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_10 PF12846.2 gi|529076947|ref|YP_008375950.1| - 0.011 15.1 0.0 0.77 9.1 0.0 2.8 3 0 0 3 3 3 0 AAA-like domain AAA_28 PF13521.1 gi|529076947|ref|YP_008375950.1| - 0.013 15.4 0.1 3.8 7.4 0.0 2.9 2 0 0 2 2 2 0 AAA domain Thymidylate_kin PF02223.12 gi|529076947|ref|YP_008375950.1| - 0.014 14.7 0.0 1.9 7.8 0.0 2.4 2 0 0 2 2 2 0 Thymidylate kinase NB-ARC PF00931.17 gi|529076947|ref|YP_008375950.1| - 0.02 13.7 0.1 0.63 8.8 0.0 2.3 2 0 0 2 2 2 0 NB-ARC domain DUF87 PF01935.12 gi|529076947|ref|YP_008375950.1| - 0.02 14.6 0.1 5.4 6.7 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function DUF87 ArgK PF03308.11 gi|529076947|ref|YP_008375950.1| - 0.021 13.5 0.5 3.7 6.2 0.0 2.2 2 0 0 2 2 2 0 ArgK protein Fer4_9 PF13187.1 gi|529076947|ref|YP_008375950.1| - 0.058 13.6 10.6 0.11 12.8 7.3 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain AAA_31 PF13614.1 gi|529076947|ref|YP_008375950.1| - 0.083 12.8 0.0 13 5.7 0.0 3.5 3 1 0 3 3 3 0 AAA domain Fer4_2 PF12797.2 gi|529076947|ref|YP_008375950.1| - 0.088 12.7 11.6 0.097 12.6 1.2 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain AAA_13 PF13166.1 gi|529076947|ref|YP_008375950.1| - 0.23 9.8 0.0 14 3.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain Fer4_7 PF12838.2 gi|529076947|ref|YP_008375950.1| - 0.68 10.3 10.2 2 8.8 7.1 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|529076947|ref|YP_008375950.1| - 2.4 8.0 11.8 7 6.5 8.4 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|529076947|ref|YP_008375950.1| - 3.7 7.4 8.6 9.5 6.1 5.9 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|529076947|ref|YP_008375950.1| - 5.3 7.8 13.0 0.12 13.0 2.2 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|529076947|ref|YP_008375950.1| - 9.3 7.0 10.8 0.15 12.8 1.0 2.1 1 1 2 3 3 2 0 4Fe-4S double cluster binding domain PHP PF02811.14 gi|529076948|ref|YP_008375951.1| - 3.5e-08 33.4 0.2 5e-08 32.9 0.1 1.3 1 0 0 1 1 1 1 PHP domain Amidohydro_4 PF13147.1 gi|529076948|ref|YP_008375951.1| - 0.0081 16.2 9.7 0.021 14.8 6.7 1.7 1 1 0 1 1 1 1 Amidohydrolase ATP-grasp_4 PF13535.1 gi|529076948|ref|YP_008375951.1| - 0.5 10.0 2.7 0.34 10.6 0.5 1.7 2 1 0 2 2 2 0 ATP-grasp domain Lactate_perm PF02652.9 gi|529076949|ref|YP_008375952.1| - 7.4e-95 318.4 26.6 3.8e-94 316.0 18.4 1.8 1 1 0 1 1 1 1 L-lactate permease Peptidase_M54 PF07998.6 gi|529076950|ref|YP_008375953.1| - 6e-24 84.8 0.1 7.6e-24 84.5 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.19 gi|529076950|ref|YP_008375953.1| - 2.7e-05 23.9 0.0 2.7e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Matrixin Reprolysin_2 PF13574.1 gi|529076950|ref|YP_008375953.1| - 0.00021 21.3 0.0 0.00025 21.1 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_4 PF13583.1 gi|529076950|ref|YP_008375953.1| - 0.00038 20.0 0.0 0.00044 19.8 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_3 PF13582.1 gi|529076950|ref|YP_008375953.1| - 0.00088 19.8 0.0 0.0011 19.4 0.0 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.1 gi|529076950|ref|YP_008375953.1| - 0.0029 17.5 0.0 0.0033 17.3 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12 DUF1025 PF06262.6 gi|529076950|ref|YP_008375953.1| - 0.0091 15.7 0.1 0.017 14.8 0.0 1.4 1 0 0 1 1 1 1 Possibl zinc metallo-peptidase Peptidase_M66 PF10462.4 gi|529076950|ref|YP_008375953.1| - 0.012 14.4 0.0 0.015 14.1 0.0 1.1 1 0 0 1 1 1 0 Peptidase M66 Peptidase_M43 PF05572.8 gi|529076950|ref|YP_008375953.1| - 0.022 14.3 0.0 0.028 14.0 0.0 1.3 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A Reprolysin PF01421.14 gi|529076950|ref|YP_008375953.1| - 0.027 14.0 0.0 0.033 13.7 0.0 1.1 1 0 0 1 1 1 0 Reprolysin (M12B) family zinc metalloprotease Metallopep PF12044.3 gi|529076950|ref|YP_008375953.1| - 0.041 12.3 0.1 0.061 11.7 0.1 1.1 1 0 0 1 1 1 0 Putative peptidase family Peptidase_M57 PF12388.3 gi|529076950|ref|YP_008375953.1| - 0.045 13.0 0.1 0.11 11.8 0.0 1.6 2 0 0 2 2 2 0 Dual-action HEIGH metallo-peptidase HAD_2 PF13419.1 gi|529076951|ref|YP_008375954.1| - 1.9e-10 41.2 0.9 4.5e-09 36.7 0.7 2.2 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|529076951|ref|YP_008375954.1| - 0.00038 20.9 0.1 0.00058 20.3 0.1 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase F420_oxidored PF03807.12 gi|529076952|ref|YP_008375955.1| - 4e-19 68.8 1.3 4.9e-19 68.5 0.2 1.7 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.11 gi|529076952|ref|YP_008375955.1| - 1.5e-06 27.7 0.0 2e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|529076952|ref|YP_008375955.1| - 3.9e-06 26.6 0.0 5.5e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Semialdhyde_dh PF01118.19 gi|529076952|ref|YP_008375955.1| - 6.3e-05 23.2 0.4 9.7e-05 22.6 0.2 1.4 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|529076952|ref|YP_008375955.1| - 0.00015 21.8 1.9 0.00024 21.1 1.3 1.5 1 0 0 1 1 1 1 NADH(P)-binding Saccharop_dh PF03435.13 gi|529076952|ref|YP_008375955.1| - 0.00072 18.6 0.1 0.0045 16.0 0.1 1.9 2 0 0 2 2 2 1 Saccharopine dehydrogenase adh_short PF00106.20 gi|529076952|ref|YP_008375955.1| - 0.011 15.6 2.1 0.011 15.6 1.5 2.0 1 1 0 2 2 2 0 short chain dehydrogenase KR PF08659.5 gi|529076952|ref|YP_008375955.1| - 0.023 14.3 0.7 0.047 13.3 0.5 1.5 1 0 0 1 1 1 0 KR domain Shikimate_DH PF01488.15 gi|529076952|ref|YP_008375955.1| - 0.025 14.6 0.1 0.048 13.7 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.13 gi|529076952|ref|YP_008375955.1| - 0.027 14.1 0.2 0.049 13.2 0.2 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PDH PF02153.12 gi|529076952|ref|YP_008375955.1| - 0.029 13.2 0.1 0.041 12.7 0.0 1.2 1 0 0 1 1 1 0 Prephenate dehydrogenase NmrA PF05368.8 gi|529076952|ref|YP_008375955.1| - 0.048 12.9 0.1 0.068 12.4 0.1 1.2 1 0 0 1 1 1 0 NmrA-like family Ldh_1_N PF00056.18 gi|529076952|ref|YP_008375955.1| - 0.08 12.7 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|529076952|ref|YP_008375955.1| - 0.093 13.2 0.2 0.19 12.2 0.1 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold E3_UbLigase_EDD PF11547.3 gi|529076952|ref|YP_008375955.1| - 0.87 9.1 3.3 0.71 9.4 0.6 2.1 2 0 0 2 2 2 0 E3 ubiquitin ligase EDD DXP_reductoisom PF02670.11 gi|529076952|ref|YP_008375955.1| - 1.6 9.2 6.9 6.7 7.2 0.2 3.0 2 1 1 3 3 3 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase Thioredoxin PF00085.15 gi|529076953|ref|YP_008375956.1| - 1.9e-19 69.2 0.0 2e-19 69.2 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.1 gi|529076953|ref|YP_008375956.1| - 3.9e-08 33.3 0.0 0.0011 19.0 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|529076953|ref|YP_008375956.1| - 6.7e-07 29.4 0.1 6.9e-05 23.0 0.1 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.1 gi|529076953|ref|YP_008375956.1| - 2.6e-06 27.1 0.0 2.8e-06 27.0 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_9 PF14595.1 gi|529076953|ref|YP_008375956.1| - 1.2e-05 24.8 0.1 1.4e-05 24.6 0.1 1.1 1 0 0 1 1 1 1 Thioredoxin DUF836 PF05768.9 gi|529076953|ref|YP_008375956.1| - 0.0015 18.7 0.0 0.0017 18.5 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) AhpC-TSA PF00578.16 gi|529076953|ref|YP_008375956.1| - 0.0022 17.6 0.2 0.15 11.7 0.0 2.0 1 1 1 2 2 2 1 AhpC/TSA family Glutaredoxin PF00462.19 gi|529076953|ref|YP_008375956.1| - 0.0042 17.0 0.0 0.0065 16.4 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin_7 PF13899.1 gi|529076953|ref|YP_008375956.1| - 0.01 15.8 0.9 0.02 14.8 0.1 2.1 2 1 0 2 2 2 0 Thioredoxin-like Redoxin PF08534.5 gi|529076953|ref|YP_008375956.1| - 0.033 13.7 0.2 0.58 9.7 0.0 2.0 1 1 1 2 2 2 0 Redoxin DSBA PF01323.15 gi|529076953|ref|YP_008375956.1| - 0.09 12.3 0.0 1.6 8.2 0.0 1.9 1 1 1 2 2 2 0 DSBA-like thioredoxin domain HyaE PF07449.6 gi|529076953|ref|YP_008375956.1| - 0.12 12.3 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE Thioredoxin_5 PF13743.1 gi|529076953|ref|YP_008375956.1| - 0.14 11.7 0.0 0.15 11.6 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin Sec61_beta PF03911.11 gi|529076954|ref|YP_008375957.1| - 4.6e-07 29.5 0.0 5.8e-07 29.1 0.0 1.2 1 0 0 1 1 1 1 Sec61beta family DUF402 PF04167.8 gi|529076955|ref|YP_008375958.1| - 6.1e-21 74.0 1.5 1.2e-20 73.0 1.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF402) S1 PF00575.18 gi|529076955|ref|YP_008375958.1| - 3e-06 27.2 0.0 9.1e-06 25.6 0.0 1.8 1 0 0 1 1 1 1 S1 RNA binding domain AIM24 PF01987.12 gi|529076956|ref|YP_008375959.1| - 2.7e-68 229.6 0.1 3e-68 229.4 0.0 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 adh_short PF00106.20 gi|529076957|ref|YP_008375960.1| - 4.6e-29 101.4 2.6 5.5e-29 101.2 1.8 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|529076957|ref|YP_008375960.1| - 1.1e-18 67.8 0.0 2.2e-17 63.6 0.0 2.0 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|529076957|ref|YP_008375960.1| - 9.5e-13 48.2 1.3 1.4e-12 47.6 0.9 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|529076957|ref|YP_008375960.1| - 7.3e-06 25.5 0.0 9.8e-06 25.1 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|529076957|ref|YP_008375960.1| - 0.00061 19.8 0.5 0.001 19.1 0.3 1.4 1 0 0 1 1 1 1 NADH(P)-binding Enoyl_reductase PF12241.3 gi|529076957|ref|YP_008375960.1| - 0.01 14.8 0.0 0.014 14.3 0.0 1.1 1 0 0 1 1 1 0 Trans-2-enoyl-CoA reductase catalytic region NmrA PF05368.8 gi|529076957|ref|YP_008375960.1| - 0.028 13.6 1.0 0.041 13.1 0.7 1.2 1 0 0 1 1 1 0 NmrA-like family 3Beta_HSD PF01073.14 gi|529076957|ref|YP_008375960.1| - 0.067 11.8 0.1 0.082 11.5 0.1 1.1 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family DUF4219 PF13961.1 gi|529076957|ref|YP_008375960.1| - 0.098 12.1 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4219) zf-HYPF PF07503.7 gi|529076958|ref|YP_008375961.1| - 0.007 15.7 0.6 1.4 8.3 0.0 2.2 2 0 0 2 2 2 2 HypF finger zf-C2H2_6 PF13912.1 gi|529076958|ref|YP_008375961.1| - 0.17 11.8 0.7 0.53 10.2 0.0 1.9 2 0 0 2 2 2 0 C2H2-type zinc finger zf-RING_3 PF14369.1 gi|529076958|ref|YP_008375961.1| - 0.32 11.0 1.9 8.2 6.5 0.1 2.3 2 0 0 2 2 2 0 zinc-finger Lar_restr_allev PF14354.1 gi|529076958|ref|YP_008375961.1| - 0.46 10.8 2.2 5.2 7.4 1.5 2.0 1 1 0 1 1 1 0 Restriction alleviation protein Lar BCD PF15461.1 gi|529076959|ref|YP_008375962.1| - 1.7e-63 214.5 14.1 2.2e-63 214.0 9.8 1.2 1 0 0 1 1 1 1 Beta-carotene 15,15'-dioxygenase Hydrolase_4 PF12146.3 gi|529076959|ref|YP_008375962.1| - 0.056 13.3 0.0 0.24 11.2 0.0 2.0 2 0 0 2 2 2 0 Putative lysophospholipase Amino_oxidase PF01593.19 gi|529076960|ref|YP_008375963.1| - 4.6e-20 72.1 1.1 1.3e-14 54.1 0.0 2.2 2 1 0 2 2 2 2 Flavin containing amine oxidoreductase DAO PF01266.19 gi|529076960|ref|YP_008375963.1| - 1.1e-18 67.2 5.0 3.4e-17 62.3 3.5 2.2 1 1 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|529076960|ref|YP_008375963.1| - 1e-16 60.6 0.4 3.6e-16 58.9 0.1 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|529076960|ref|YP_008375963.1| - 7.6e-05 21.7 4.6 8.3e-05 21.5 2.0 1.8 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|529076960|ref|YP_008375963.1| - 0.00011 22.1 0.0 0.0016 18.3 0.5 2.1 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|529076960|ref|YP_008375963.1| - 0.00015 20.9 0.9 0.00034 19.7 0.6 1.5 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|529076960|ref|YP_008375963.1| - 0.00018 20.7 0.0 0.0018 17.4 0.0 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|529076960|ref|YP_008375963.1| - 0.00019 21.7 0.7 0.00019 21.7 0.5 2.8 4 0 0 4 4 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|529076960|ref|YP_008375963.1| - 0.0018 18.3 0.1 0.019 14.9 0.1 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|529076960|ref|YP_008375963.1| - 0.0033 15.9 0.4 0.057 11.8 0.7 2.0 2 0 0 2 2 2 1 HI0933-like protein Strep_67kDa_ant PF06100.6 gi|529076960|ref|YP_008375963.1| - 0.0058 15.0 0.0 0.013 13.9 0.0 1.5 2 0 0 2 2 2 1 Streptococcal 67 kDa myosin-cross-reactive antigen like family NAD_binding_7 PF13241.1 gi|529076960|ref|YP_008375963.1| - 0.015 15.5 0.0 0.032 14.5 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding Thi4 PF01946.12 gi|529076960|ref|YP_008375963.1| - 0.018 14.1 0.9 0.037 13.1 0.6 1.4 1 0 0 1 1 1 0 Thi4 family GIDA PF01134.17 gi|529076960|ref|YP_008375963.1| - 0.11 11.3 1.6 0.18 10.6 1.1 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A IlvN PF07991.7 gi|529076960|ref|YP_008375963.1| - 0.13 11.6 0.0 0.27 10.5 0.0 1.5 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain 3HCDH_N PF02737.13 gi|529076960|ref|YP_008375963.1| - 0.13 11.9 1.2 0.23 11.0 0.8 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PAS_9 PF13426.1 gi|529076961|ref|YP_008375964.1| - 2.1e-25 89.1 0.1 5.5e-25 87.7 0.0 1.8 1 0 0 1 1 1 1 PAS domain HTH_10 PF04967.7 gi|529076961|ref|YP_008375964.1| - 1.5e-19 69.2 0.0 3.4e-19 68.1 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain PAS PF00989.19 gi|529076961|ref|YP_008375964.1| - 2.4e-11 43.3 0.0 5.8e-11 42.1 0.0 1.7 1 0 0 1 1 1 1 PAS fold Response_reg PF00072.19 gi|529076961|ref|YP_008375964.1| - 3.3e-11 43.1 0.1 9.1e-11 41.7 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain GAF_2 PF13185.1 gi|529076961|ref|YP_008375964.1| - 6.8e-10 39.6 0.9 2e-09 38.0 0.6 1.9 1 0 0 1 1 1 1 GAF domain PAS_4 PF08448.5 gi|529076961|ref|YP_008375964.1| - 1.2e-09 38.1 0.1 1e-08 35.1 0.0 2.6 2 0 0 2 2 2 1 PAS fold GAF_3 PF13492.1 gi|529076961|ref|YP_008375964.1| - 5.4e-08 33.0 0.1 2.6e-07 30.7 0.0 2.2 2 0 0 2 2 2 1 GAF domain PAS_3 PF08447.6 gi|529076961|ref|YP_008375964.1| - 5.4e-07 29.6 0.0 1.4e-06 28.3 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|529076961|ref|YP_008375964.1| - 6e-05 22.7 0.0 0.00086 19.0 0.0 2.7 2 0 0 2 2 2 1 PAS domain GAF PF01590.21 gi|529076961|ref|YP_008375964.1| - 0.00091 19.3 0.0 0.0025 17.9 0.0 1.8 1 0 0 1 1 1 1 GAF domain NAD_binding_10 PF13460.1 gi|529076961|ref|YP_008375964.1| - 0.033 14.1 4.8 0.55 10.2 0.3 3.4 3 0 0 3 3 3 0 NADH(P)-binding DUF1492 PF07374.6 gi|529076961|ref|YP_008375964.1| - 0.19 11.8 0.4 6.5 6.9 0.0 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF1492) Bac_rhodopsin PF01036.13 gi|529076963|ref|YP_008375966.1| - 8.5e-61 205.0 15.0 9.6e-61 204.9 10.4 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein DUF1673 PF07895.6 gi|529076963|ref|YP_008375966.1| - 0.019 14.5 3.4 0.076 12.5 1.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1673) DUF2637 PF10935.3 gi|529076963|ref|YP_008375966.1| - 0.028 14.3 2.4 0.8 9.6 0.4 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF2637) ABC2_membrane_2 PF12679.2 gi|529076963|ref|YP_008375966.1| - 3.9 6.2 10.7 4.2 6.1 5.8 1.9 2 0 0 2 2 2 0 ABC-2 family transporter protein DUF21 PF01595.15 gi|529076963|ref|YP_008375966.1| - 5.1 6.3 10.8 0.23 10.7 3.7 1.4 2 0 0 2 2 2 0 Domain of unknown function DUF21 ABC_tran PF00005.22 gi|529076964|ref|YP_008375967.1| - 1.1e-20 74.3 0.0 3.2e-10 40.4 0.0 4.3 3 2 0 3 3 3 3 ABC transporter SMC_N PF02463.14 gi|529076964|ref|YP_008375967.1| - 1.7e-11 43.7 0.0 0.085 12.0 0.0 4.1 3 1 0 3 3 3 3 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|529076964|ref|YP_008375967.1| - 1.4e-09 38.3 5.8 0.0024 17.8 0.0 4.3 4 0 0 4 4 4 3 AAA domain AAA_29 PF13555.1 gi|529076964|ref|YP_008375967.1| - 3.1e-09 36.2 0.0 0.00069 19.0 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|529076964|ref|YP_008375967.1| - 1.5e-06 27.7 0.0 0.086 12.2 0.0 3.2 4 0 0 4 4 2 2 AAA domain AAA_16 PF13191.1 gi|529076964|ref|YP_008375967.1| - 7.7e-06 26.0 0.1 0.17 11.8 0.0 3.1 3 0 0 3 3 3 2 AAA ATPase domain AAA_22 PF13401.1 gi|529076964|ref|YP_008375967.1| - 1.4e-05 25.2 0.2 0.17 12.0 0.0 3.6 4 0 0 4 4 4 2 AAA domain AAA_23 PF13476.1 gi|529076964|ref|YP_008375967.1| - 1.5e-05 25.4 0.0 0.092 13.0 0.0 2.5 2 0 0 2 2 2 2 AAA domain DnaJ_CXXCXGXG PF00684.14 gi|529076964|ref|YP_008375967.1| - 5.7e-05 23.0 13.4 0.0017 18.3 0.9 3.7 4 0 0 4 4 3 1 DnaJ central domain KaiC PF06745.8 gi|529076964|ref|YP_008375967.1| - 6.4e-05 22.1 0.1 0.037 13.1 0.0 3.0 3 0 0 3 3 3 1 KaiC DUF258 PF03193.11 gi|529076964|ref|YP_008375967.1| - 0.00019 20.6 0.0 0.55 9.4 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|529076964|ref|YP_008375967.1| - 0.0002 20.9 0.1 0.1 11.9 0.0 2.7 2 0 0 2 2 2 1 AAA-like domain AAA_14 PF13173.1 gi|529076964|ref|YP_008375967.1| - 0.00042 20.2 0.0 0.74 9.7 0.0 3.0 3 0 0 3 3 2 2 AAA domain AAA_33 PF13671.1 gi|529076964|ref|YP_008375967.1| - 0.00043 20.1 0.0 1.2 8.9 0.0 3.3 4 0 0 4 4 2 2 AAA domain AAA_18 PF13238.1 gi|529076964|ref|YP_008375967.1| - 0.0026 18.0 0.0 1.6 9.0 0.0 3.0 2 0 0 2 2 2 1 AAA domain Zn-ribbon_8 PF09723.5 gi|529076964|ref|YP_008375967.1| - 0.0031 17.4 15.5 1.1 9.2 0.4 4.4 4 0 0 4 4 4 1 Zinc ribbon domain AAA_15 PF13175.1 gi|529076964|ref|YP_008375967.1| - 0.0032 16.5 0.0 0.38 9.7 0.0 3.0 4 0 0 4 4 4 1 AAA ATPase domain RNA_helicase PF00910.17 gi|529076964|ref|YP_008375967.1| - 0.012 15.8 0.0 0.34 11.1 0.0 2.3 2 0 0 2 2 2 0 RNA helicase APS_kinase PF01583.15 gi|529076964|ref|YP_008375967.1| - 0.013 15.2 0.1 6.7 6.3 0.0 2.5 2 0 0 2 2 2 0 Adenylylsulphate kinase DUF2075 PF09848.4 gi|529076964|ref|YP_008375967.1| - 0.019 13.9 0.1 3.6 6.4 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) NACHT PF05729.7 gi|529076964|ref|YP_008375967.1| - 0.021 14.4 0.0 1.1 8.9 0.0 2.4 2 0 0 2 2 2 0 NACHT domain AAA_19 PF13245.1 gi|529076964|ref|YP_008375967.1| - 0.027 14.2 0.1 13 5.6 0.0 2.9 2 0 0 2 2 2 0 Part of AAA domain cobW PF02492.14 gi|529076964|ref|YP_008375967.1| - 0.031 13.7 0.2 1.9 7.9 0.0 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Viral_helicase1 PF01443.13 gi|529076964|ref|YP_008375967.1| - 0.047 13.2 0.0 1.2 8.5 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase MobB PF03205.9 gi|529076964|ref|YP_008375967.1| - 0.054 13.1 0.1 1.8 8.3 0.0 2.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1 PF01926.18 gi|529076964|ref|YP_008375967.1| - 0.092 12.7 0.0 7.8 6.4 0.0 3.3 3 0 0 3 3 3 0 50S ribosome-binding GTPase AAA_17 PF13207.1 gi|529076964|ref|YP_008375967.1| - 0.096 13.5 11.9 0.67 10.7 0.0 4.4 5 1 0 5 5 3 0 AAA domain Zn_Tnp_IS91 PF14319.1 gi|529076964|ref|YP_008375967.1| - 3.1 7.3 0.0 3.1 7.3 0.0 2.8 4 0 0 4 4 4 0 Transposase zinc-binding domain PhoU PF01895.14 gi|529076965|ref|YP_008375968.1| - 8.7e-16 58.1 6.7 4e-11 43.2 0.1 2.3 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|529076965|ref|YP_008375968.1| - 1.3e-05 24.8 0.0 2.7e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE Inositol_P PF00459.20 gi|529076965|ref|YP_008375968.1| - 0.061 12.6 0.5 0.11 11.7 0.4 1.4 1 0 0 1 1 1 0 Inositol monophosphatase family Aldo_ket_red PF00248.16 gi|529076966|ref|YP_008375969.1| - 9.5e-64 214.9 0.0 1.2e-63 214.6 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family Radical_SAM PF04055.16 gi|529076966|ref|YP_008375969.1| - 0.024 14.8 0.0 1.7 8.8 0.0 2.3 2 0 0 2 2 2 0 Radical SAM superfamily HTH_Tnp_1 PF01527.15 gi|529076966|ref|YP_008375969.1| - 0.051 13.5 0.0 1.8 8.5 0.0 2.3 2 0 0 2 2 2 0 Transposase HTH_23 PF13384.1 gi|529076966|ref|YP_008375969.1| - 0.07 12.8 0.0 0.23 11.1 0.0 1.9 2 0 0 2 2 2 0 Homeodomain-like domain HSP70 PF00012.15 gi|529076967|ref|YP_008375970.1| - 5e-242 804.1 17.4 2.4e-212 706.0 9.6 2.0 1 1 1 2 2 2 2 Hsp70 protein MreB_Mbl PF06723.8 gi|529076967|ref|YP_008375970.1| - 5.6e-19 67.9 0.1 5.6e-19 67.9 0.1 2.2 2 1 0 2 2 2 1 MreB/Mbl protein FGGY_C PF02782.11 gi|529076967|ref|YP_008375970.1| - 0.00013 21.5 0.0 0.00036 20.1 0.0 1.9 1 1 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain FtsA PF14450.1 gi|529076967|ref|YP_008375970.1| - 0.0026 17.5 0.0 11 5.8 0.0 4.1 3 1 0 3 3 3 2 Cell division protein FtsA StbA PF06406.6 gi|529076967|ref|YP_008375970.1| - 0.011 14.7 0.1 0.13 11.1 0.0 2.5 2 1 0 3 3 3 0 StbA protein DUF4304 PF14137.1 gi|529076967|ref|YP_008375970.1| - 0.11 12.5 0.9 7.4 6.7 0.2 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4304) Hydantoinase_A PF01968.13 gi|529076967|ref|YP_008375970.1| - 0.14 11.2 7.5 0.23 10.5 0.0 3.5 4 0 0 4 4 4 0 Hydantoinase/oxoprolinase GrpE PF01025.14 gi|529076968|ref|YP_008375971.1| - 6.2e-41 139.7 14.4 1.7e-40 138.3 10.0 1.7 1 1 0 1 1 1 1 GrpE DUF641 PF04859.7 gi|529076968|ref|YP_008375971.1| - 0.00045 19.9 6.0 0.00073 19.3 3.8 1.7 1 1 0 1 1 1 1 Plant protein of unknown function (DUF641) DUF148 PF02520.12 gi|529076968|ref|YP_008375971.1| - 0.01 15.5 4.0 0.012 15.4 1.6 1.9 1 1 1 2 2 2 0 Domain of unknown function DUF148 Atg14 PF10186.4 gi|529076968|ref|YP_008375971.1| - 0.016 14.1 11.4 0.022 13.7 7.9 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Exonuc_VII_L PF02601.10 gi|529076968|ref|YP_008375971.1| - 0.023 13.8 2.2 0.028 13.6 1.5 1.2 1 0 0 1 1 1 0 Exonuclease VII, large subunit GPW_gp25 PF04965.9 gi|529076968|ref|YP_008375971.1| - 0.037 13.5 2.0 0.07 12.6 0.1 2.2 2 0 0 2 2 2 0 Gene 25-like lysozyme DUF327 PF03885.8 gi|529076968|ref|YP_008375971.1| - 0.043 13.6 6.8 0.03 14.1 3.1 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF327) DUF3807 PF12720.2 gi|529076968|ref|YP_008375971.1| - 0.046 13.8 11.8 0.092 12.9 8.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3807) IncA PF04156.9 gi|529076968|ref|YP_008375971.1| - 0.049 13.2 17.8 0.08 12.5 12.4 1.4 1 0 0 1 1 1 0 IncA protein DUF3373 PF11853.3 gi|529076968|ref|YP_008375971.1| - 0.054 12.0 1.5 0.055 11.9 1.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3373) DUF2077 PF09850.4 gi|529076968|ref|YP_008375971.1| - 0.058 12.8 0.2 0.058 12.8 0.2 2.8 1 1 2 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2077) LolB PF03550.9 gi|529076968|ref|YP_008375971.1| - 0.071 12.6 0.4 0.12 11.9 0.2 1.3 1 0 0 1 1 1 0 Outer membrane lipoprotein LolB DUF812 PF05667.6 gi|529076968|ref|YP_008375971.1| - 0.11 11.0 10.5 0.13 10.7 7.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF812) DUF1672 PF07901.6 gi|529076968|ref|YP_008375971.1| - 0.11 11.4 2.2 0.17 10.8 1.3 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1672) CMS1 PF14617.1 gi|529076968|ref|YP_008375971.1| - 0.11 11.5 11.6 0.018 14.0 4.5 1.9 1 1 1 2 2 2 0 U3-containing 90S pre-ribosomal complex subunit AAA_13 PF13166.1 gi|529076968|ref|YP_008375971.1| - 0.14 10.6 7.3 0.17 10.3 5.1 1.2 1 0 0 1 1 1 0 AAA domain Med9 PF07544.8 gi|529076968|ref|YP_008375971.1| - 0.14 11.8 6.7 0.64 9.7 4.3 2.3 1 1 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 Spc7 PF08317.6 gi|529076968|ref|YP_008375971.1| - 0.28 9.8 13.9 0.28 9.7 8.9 1.4 1 1 0 1 1 1 0 Spc7 kinetochore protein FUSC PF04632.7 gi|529076968|ref|YP_008375971.1| - 0.29 9.5 8.0 0.32 9.3 5.5 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family SlyX PF04102.7 gi|529076968|ref|YP_008375971.1| - 0.44 10.9 13.2 0.21 11.9 3.8 3.3 1 1 1 2 2 2 0 SlyX TarH PF02203.10 gi|529076968|ref|YP_008375971.1| - 0.63 9.8 13.6 5.1 6.9 9.4 2.1 1 1 1 2 2 2 0 Tar ligand binding domain homologue TMPIT PF07851.8 gi|529076968|ref|YP_008375971.1| - 0.65 9.0 3.8 0.82 8.6 2.7 1.2 1 0 0 1 1 1 0 TMPIT-like protein SGT1 PF07093.6 gi|529076968|ref|YP_008375971.1| - 0.77 8.0 13.5 0.83 7.9 9.4 1.1 1 0 0 1 1 1 0 SGT1 protein TMF_DNA_bd PF12329.3 gi|529076968|ref|YP_008375971.1| - 0.77 9.6 22.3 0.52 10.1 11.5 2.9 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding Baculo_PEP_C PF04513.7 gi|529076968|ref|YP_008375971.1| - 0.79 9.5 4.4 6 6.7 2.9 2.1 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus OmpH PF03938.9 gi|529076968|ref|YP_008375971.1| - 0.8 9.6 19.0 0.028 14.3 8.3 1.9 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) Malate_DH PF12434.3 gi|529076968|ref|YP_008375971.1| - 0.84 9.4 5.6 0.48 10.1 1.2 2.7 2 0 0 2 2 1 0 Malate dehydrogenase enzyme APG6 PF04111.7 gi|529076968|ref|YP_008375971.1| - 1 8.3 14.3 1.5 7.7 9.9 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 TBPIP PF07106.8 gi|529076968|ref|YP_008375971.1| - 1.1 8.8 14.5 1.5 8.3 9.4 1.6 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Peptidase_S49_N PF08496.5 gi|529076968|ref|YP_008375971.1| - 1.2 8.8 8.4 1.1 9.0 4.6 1.8 2 0 0 2 2 2 0 Peptidase family S49 N-terminal ADIP PF11559.3 gi|529076968|ref|YP_008375971.1| - 1.9 8.3 14.5 2 8.2 9.3 1.6 1 1 0 1 1 1 0 Afadin- and alpha -actinin-Binding PA26 PF04636.8 gi|529076968|ref|YP_008375971.1| - 2.1 6.9 5.2 2.7 6.6 3.6 1.2 1 0 0 1 1 1 0 PA26 p53-induced protein (sestrin) DUF3552 PF12072.3 gi|529076968|ref|YP_008375971.1| - 2.1 7.4 22.6 1 8.5 13.7 1.8 1 1 0 2 2 2 0 Domain of unknown function (DUF3552) Herpes_UL6 PF01763.11 gi|529076968|ref|YP_008375971.1| - 2.5 6.1 7.2 3.5 5.7 4.8 1.4 1 1 0 1 1 1 0 Herpesvirus UL6 like TMCO5 PF14992.1 gi|529076968|ref|YP_008375971.1| - 3.5 6.6 18.5 5 6.1 12.8 1.1 1 0 0 1 1 1 0 TMCO5 family Fib_alpha PF08702.5 gi|529076968|ref|YP_008375971.1| - 3.6 7.7 6.7 6.8 6.7 3.7 2.0 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family DUF1542 PF07564.6 gi|529076968|ref|YP_008375971.1| - 3.8 7.6 11.2 0.89 9.6 0.1 2.8 3 0 0 3 3 2 0 Domain of Unknown Function (DUF1542) zf-C4H2 PF10146.4 gi|529076968|ref|YP_008375971.1| - 4 7.3 8.9 4.4 7.2 6.2 1.2 1 0 0 1 1 1 0 Zinc finger-containing protein DUF972 PF06156.8 gi|529076968|ref|YP_008375971.1| - 6.4 7.1 10.0 13 6.1 6.4 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF972) V_ATPase_I PF01496.14 gi|529076968|ref|YP_008375971.1| - 7.6 4.2 6.4 8.8 4.0 4.5 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF4407 PF14362.1 gi|529076968|ref|YP_008375971.1| - 9.4 5.0 17.2 22 3.8 12.0 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) ResIII PF04851.10 gi|529076969|ref|YP_008375972.1| - 2.5e-25 89.3 0.0 3.8e-23 82.2 0.0 2.8 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|529076969|ref|YP_008375972.1| - 2.7e-15 55.9 0.1 1.1e-14 53.9 0.1 2.1 2 1 1 3 3 3 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|529076969|ref|YP_008375972.1| - 1.5e-09 37.5 0.0 2.5e-08 33.5 0.0 2.6 2 1 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C_2 PF13307.1 gi|529076969|ref|YP_008375972.1| - 0.016 15.1 0.0 1.2 9.0 0.0 2.9 3 0 0 3 3 3 0 Helicase C-terminal domain HTH_20 PF12840.2 gi|529076970|ref|YP_008375973.1| - 0.044 13.5 0.1 0.092 12.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DUF790 PF05626.6 gi|529076973|ref|YP_008375976.1| - 1.1e-91 307.1 0.0 1.5e-91 306.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF790) Nol1_Nop2_Fmu_2 PF13636.1 gi|529076974|ref|YP_008375977.1| - 2.4e-20 72.4 0.0 3.1e-20 72.1 0.0 1.2 1 0 0 1 1 1 1 pre-rRNA processing and ribosome biogenesis HTH_33 PF13592.1 gi|529076974|ref|YP_008375977.1| - 0.018 14.5 0.0 2.3 7.8 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn helix DUF3606 PF12244.3 gi|529076974|ref|YP_008375977.1| - 0.11 12.1 0.1 1.3 8.7 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3606) Nol1_Nop2_Fmu PF01189.12 gi|529076975|ref|YP_008375978.1| - 1.2e-49 169.2 0.0 1.5e-49 168.9 0.0 1.0 1 0 0 1 1 1 1 NOL1/NOP2/sun family Methyltransf_31 PF13847.1 gi|529076975|ref|YP_008375978.1| - 5.3e-07 29.3 0.0 8.1e-07 28.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|529076975|ref|YP_008375978.1| - 4.8e-06 27.1 0.0 1.1e-05 25.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|529076975|ref|YP_008375978.1| - 7e-06 26.0 0.1 1.8e-05 24.7 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.14 gi|529076975|ref|YP_008375978.1| - 0.018 14.9 0.0 0.044 13.7 0.0 1.5 1 1 1 2 2 2 0 FtsJ-like methyltransferase PCMT PF01135.14 gi|529076975|ref|YP_008375978.1| - 0.1 12.1 0.0 1.9 7.9 0.0 2.1 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PAC2 PF09754.4 gi|529076976|ref|YP_008375979.1| - 3.2e-40 138.3 0.0 3.9e-40 138.0 0.0 1.0 1 0 0 1 1 1 1 PAC2 family DUF904 PF06005.7 gi|529076976|ref|YP_008375979.1| - 0.0077 16.4 1.7 0.011 15.9 1.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF904) Laminin_I PF06008.9 gi|529076976|ref|YP_008375979.1| - 0.03 13.6 0.3 0.04 13.2 0.2 1.1 1 0 0 1 1 1 0 Laminin Domain I LysE PF01810.13 gi|529076977|ref|YP_008375980.1| - 1.2e-26 93.1 7.6 1.8e-25 89.3 5.3 2.0 1 1 0 1 1 1 1 LysE type translocator HD PF01966.17 gi|529076978|ref|YP_008375981.1| - 1.4e-15 57.3 1.6 1.4e-15 57.3 1.1 1.6 2 0 0 2 2 2 1 HD domain HD_4 PF13328.1 gi|529076978|ref|YP_008375981.1| - 0.036 13.7 1.4 0.038 13.7 0.2 1.6 2 0 0 2 2 2 0 HD domain Acetyltransf_1 PF00583.19 gi|529076979|ref|YP_008375982.1| - 1.8e-10 40.6 0.0 2.8e-10 40.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|529076979|ref|YP_008375982.1| - 1.4e-09 38.1 0.0 2e-09 37.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|529076979|ref|YP_008375982.1| - 3.8e-06 26.7 0.0 7.9e-06 25.7 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|529076979|ref|YP_008375982.1| - 8.8e-06 25.7 0.0 1.5e-05 25.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|529076979|ref|YP_008375982.1| - 9.7e-05 22.4 0.0 0.00018 21.6 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|529076979|ref|YP_008375982.1| - 0.00077 19.3 0.0 0.0017 18.2 0.0 1.6 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase FR47 PF08445.5 gi|529076979|ref|YP_008375982.1| - 0.0034 17.1 0.0 0.0066 16.1 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Zn-ribbon_8 PF09723.5 gi|529076979|ref|YP_008375982.1| - 0.0081 16.0 1.3 0.014 15.3 0.9 1.4 1 0 0 1 1 1 1 Zinc ribbon domain Acetyltransf_6 PF13480.1 gi|529076979|ref|YP_008375982.1| - 0.033 14.1 0.1 2.4 8.0 0.0 2.2 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain RNA_POL_M_15KD PF02150.11 gi|529076979|ref|YP_008375982.1| - 1.5 8.5 4.9 19 5.0 0.5 2.3 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit GFO_IDH_MocA PF01408.17 gi|529076980|ref|YP_008375983.1| - 1.5e-22 80.3 0.1 4e-22 78.9 0.0 1.8 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|529076980|ref|YP_008375983.1| - 5.6e-06 26.1 0.0 1e-05 25.2 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain DJ-1_PfpI PF01965.19 gi|529076982|ref|YP_008375985.1| - 1.2e-36 125.3 0.0 1.4e-36 125.1 0.0 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|529076982|ref|YP_008375985.1| - 6.1e-11 41.8 0.0 8.6e-11 41.3 0.0 1.2 1 0 0 1 1 1 1 Putative amidotransferase GATase PF00117.23 gi|529076982|ref|YP_008375985.1| - 1.4e-06 27.9 0.0 1.7e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|529076982|ref|YP_008375985.1| - 0.0021 17.7 0.0 0.0034 16.9 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Glyco_trans_4_4 PF13579.1 gi|529076982|ref|YP_008375985.1| - 0.026 14.6 0.7 0.15 12.1 0.2 2.1 1 1 1 2 2 2 0 Glycosyl transferase 4-like domain Peptidase_C26 PF07722.8 gi|529076982|ref|YP_008375985.1| - 0.084 12.2 0.0 0.22 10.9 0.0 1.5 1 1 0 1 1 1 0 Peptidase C26 GATase_5 PF13507.1 gi|529076982|ref|YP_008375985.1| - 0.14 11.0 0.0 0.27 10.0 0.0 1.4 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain ABC_tran PF00005.22 gi|529076984|ref|YP_008375987.1| - 2.5e-24 86.1 0.0 3.2e-24 85.7 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|529076984|ref|YP_008375987.1| - 1.6e-12 48.0 0.2 1.1e-07 32.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|529076984|ref|YP_008375987.1| - 0.00022 20.3 0.0 0.0075 15.3 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|529076984|ref|YP_008375987.1| - 0.0031 17.8 0.1 0.0053 17.0 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|529076984|ref|YP_008375987.1| - 0.019 15.7 0.3 0.054 14.3 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|529076984|ref|YP_008375987.1| - 0.038 13.5 0.2 0.07 12.6 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|529076984|ref|YP_008375987.1| - 0.043 13.7 0.5 0.084 12.8 0.2 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.1 gi|529076984|ref|YP_008375987.1| - 0.067 12.5 0.6 9.2 5.6 0.1 2.3 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|529076984|ref|YP_008375987.1| - 0.17 12.0 0.1 0.42 10.7 0.1 1.8 1 1 1 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|529076984|ref|YP_008375987.1| - 0.29 11.0 2.1 0.9 9.4 0.3 2.4 2 1 0 2 2 2 0 AAA domain TrkA_N PF02254.13 gi|529076985|ref|YP_008375988.1| - 1.9e-46 156.8 3.5 2.2e-23 82.4 0.2 3.2 3 0 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.16 gi|529076985|ref|YP_008375988.1| - 5.7e-30 102.7 1.3 3.5e-14 52.1 0.1 3.0 2 0 0 2 2 2 2 TrkA-C domain Ion_trans_2 PF07885.11 gi|529076985|ref|YP_008375988.1| - 0.00032 20.3 6.7 0.00083 19.0 4.6 1.7 1 0 0 1 1 1 1 Ion channel NAD_binding_10 PF13460.1 gi|529076985|ref|YP_008375988.1| - 0.0022 18.0 0.5 0.0022 18.0 0.4 1.9 2 0 0 2 2 2 1 NADH(P)-binding 2-Hacid_dh_C PF02826.14 gi|529076985|ref|YP_008375988.1| - 0.011 14.9 0.0 0.026 13.6 0.0 1.6 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XdhC_C PF13478.1 gi|529076985|ref|YP_008375988.1| - 0.013 15.8 0.4 0.17 12.2 0.1 2.5 2 0 0 2 2 2 0 XdhC Rossmann domain NAD_binding_7 PF13241.1 gi|529076985|ref|YP_008375988.1| - 0.035 14.3 1.3 0.24 11.6 0.1 2.8 2 1 1 3 3 3 0 Putative NAD(P)-binding bPH_2 PF03703.9 gi|529076986|ref|YP_008375989.1| - 1.3e-50 169.2 7.3 5.4e-23 80.8 0.4 3.3 3 0 0 3 3 3 3 Bacterial PH domain bPH_4 PF06713.6 gi|529076986|ref|YP_008375989.1| - 0.0019 18.0 0.0 0.069 13.0 0.0 2.7 3 0 0 3 3 3 1 Bacterial PH domain YwiC PF14256.1 gi|529076986|ref|YP_008375989.1| - 0.12 12.4 5.1 0.16 12.0 0.1 2.8 3 0 0 3 3 3 0 YwiC-like protein bPH_5 PF10882.3 gi|529076986|ref|YP_008375989.1| - 0.14 11.9 0.1 0.7 9.7 0.0 2.0 2 0 0 2 2 2 0 Bacterial PH domain bPH_3 PF14470.1 gi|529076986|ref|YP_008375989.1| - 0.14 12.4 0.0 0.92 9.8 0.0 2.0 2 0 0 2 2 2 0 Bacterial PH domain bPH_2 PF03703.9 gi|529076987|ref|YP_008375990.1| - 4.5e-18 65.0 0.0 6.2e-18 64.5 0.0 1.2 1 0 0 1 1 1 1 Bacterial PH domain Pyr_redox_2 PF07992.9 gi|529076988|ref|YP_008375991.1| - 3.9e-15 56.2 1.2 5.2e-12 46.0 0.0 2.4 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|529076988|ref|YP_008375991.1| - 6.6e-14 51.5 0.2 3e-09 36.2 0.0 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|529076988|ref|YP_008375991.1| - 2.1e-10 39.6 0.1 0.00025 19.6 0.0 2.1 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_3 PF13738.1 gi|529076988|ref|YP_008375991.1| - 3.7e-09 36.9 1.2 1.9e-06 28.1 0.1 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|529076988|ref|YP_008375991.1| - 4.7e-06 25.6 1.0 4.7e-05 22.4 0.0 2.1 1 1 1 2 2 2 1 FAD binding domain NAD_binding_9 PF13454.1 gi|529076988|ref|YP_008375991.1| - 6.4e-06 26.0 0.2 0.00041 20.1 0.1 2.3 2 0 0 2 2 2 1 FAD-NAD(P)-binding FAD_binding_3 PF01494.14 gi|529076988|ref|YP_008375991.1| - 2.7e-05 23.3 3.7 0.024 13.6 0.0 2.2 1 1 1 2 2 2 2 FAD binding domain Thi4 PF01946.12 gi|529076988|ref|YP_008375991.1| - 3e-05 23.2 0.2 6.4e-05 22.1 0.0 1.6 2 0 0 2 2 2 1 Thi4 family GIDA PF01134.17 gi|529076988|ref|YP_008375991.1| - 3.2e-05 22.9 0.2 0.0016 17.3 0.0 2.2 1 1 1 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|529076988|ref|YP_008375991.1| - 0.0019 17.3 0.1 0.0019 17.3 0.1 2.1 1 1 1 2 2 2 1 FAD dependent oxidoreductase Amino_oxidase PF01593.19 gi|529076988|ref|YP_008375991.1| - 0.0028 16.7 0.0 0.0042 16.2 0.0 1.2 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|529076988|ref|YP_008375991.1| - 0.0029 17.6 0.0 0.0073 16.3 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain K_oxygenase PF13434.1 gi|529076988|ref|YP_008375991.1| - 0.0065 15.4 0.2 1.6 7.5 0.0 2.1 1 1 1 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) Lycopene_cycl PF05834.7 gi|529076988|ref|YP_008375991.1| - 0.017 14.0 0.2 0.069 12.0 0.0 1.8 1 1 1 2 2 2 0 Lycopene cyclase protein Pyr_redox PF00070.22 gi|529076988|ref|YP_008375991.1| - 0.046 14.1 0.4 0.61 10.5 0.3 2.4 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.16 gi|529076988|ref|YP_008375991.1| - 0.056 13.0 0.0 0.13 11.8 0.0 1.6 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Trp_halogenase PF04820.9 gi|529076988|ref|YP_008375991.1| - 0.059 12.0 1.5 3.4 6.1 0.4 2.1 2 0 0 2 2 2 0 Tryptophan halogenase Myosin_N PF02736.14 gi|529076988|ref|YP_008375991.1| - 5.9 6.6 6.4 0.64 9.7 0.6 2.3 2 1 0 2 2 2 0 Myosin N-terminal SH3-like domain TIM PF00121.13 gi|529076989|ref|YP_008375992.1| - 7.2e-20 71.0 0.8 3.1e-13 49.3 0.1 2.0 1 1 1 2 2 2 2 Triosephosphate isomerase ThiG PF05690.9 gi|529076989|ref|YP_008375992.1| - 4.3e-05 22.7 2.7 0.00031 19.9 0.7 2.3 2 1 0 2 2 2 1 Thiazole biosynthesis protein ThiG IGPS PF00218.16 gi|529076989|ref|YP_008375992.1| - 0.00077 18.5 0.0 0.0017 17.4 0.0 1.6 2 1 0 2 2 2 1 Indole-3-glycerol phosphate synthase FMN_dh PF01070.13 gi|529076989|ref|YP_008375992.1| - 0.0024 16.7 1.1 0.0024 16.7 0.8 1.6 2 0 0 2 2 2 1 FMN-dependent dehydrogenase Hydrolase_like PF13242.1 gi|529076989|ref|YP_008375992.1| - 0.063 13.0 0.7 0.23 11.1 0.1 2.2 2 0 0 2 2 2 0 HAD-hyrolase-like Response_reg PF00072.19 gi|529076990|ref|YP_008375993.1| - 1.1e-17 64.0 0.8 2.1e-17 63.1 0.6 1.5 1 0 0 1 1 1 1 Response regulator receiver domain HalX PF08663.5 gi|529076990|ref|YP_008375993.1| - 1.5e-14 53.6 5.0 2.4e-14 53.0 2.8 1.9 2 0 0 2 2 2 1 HalX domain HALZ PF02183.13 gi|529076990|ref|YP_008375993.1| - 0.0057 16.3 0.2 0.014 15.1 0.1 1.6 1 0 0 1 1 1 1 Homeobox associated leucine zipper Fib_alpha PF08702.5 gi|529076990|ref|YP_008375993.1| - 0.021 14.9 0.9 0.031 14.4 0.6 1.2 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family LemA PF04011.7 gi|529076990|ref|YP_008375993.1| - 0.029 13.4 0.8 0.045 12.8 0.5 1.3 1 0 0 1 1 1 0 LemA family bZIP_2 PF07716.10 gi|529076990|ref|YP_008375993.1| - 0.054 13.3 0.6 0.054 13.3 0.4 1.9 1 1 0 1 1 1 0 Basic region leucine zipper IncA PF04156.9 gi|529076990|ref|YP_008375993.1| - 0.16 11.5 3.5 0.22 11.0 2.4 1.3 1 0 0 1 1 1 0 IncA protein TMF_DNA_bd PF12329.3 gi|529076990|ref|YP_008375993.1| - 0.37 10.6 4.9 0.77 9.6 3.4 1.6 1 1 0 1 1 1 0 TATA element modulatory factor 1 DNA binding DUF4140 PF13600.1 gi|529076990|ref|YP_008375993.1| - 0.4 11.1 3.8 0.49 10.8 1.5 2.0 2 1 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) DUF4337 PF14235.1 gi|529076990|ref|YP_008375993.1| - 0.42 10.4 1.8 0.62 9.8 1.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4337) DivIC PF04977.10 gi|529076990|ref|YP_008375993.1| - 1.5 8.3 5.8 0.48 9.9 0.5 2.1 2 0 0 2 2 2 0 Septum formation initiator HTH_31 PF13560.1 gi|529076991|ref|YP_008375994.1| - 6.3e-11 42.3 0.1 7.7e-11 42.0 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|529076991|ref|YP_008375994.1| - 1.1e-10 41.2 0.0 1.3e-10 40.9 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|529076991|ref|YP_008375994.1| - 7.9e-09 35.4 0.1 1.3e-08 34.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|529076991|ref|YP_008375994.1| - 1.4e-05 24.5 0.3 2.1e-05 24.0 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain DUF3775 PF12616.3 gi|529076991|ref|YP_008375994.1| - 0.049 13.4 0.1 0.073 12.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3775) CDP-OH_P_transf PF01066.16 gi|529076993|ref|YP_008375996.1| - 3.8e-12 46.3 11.2 8.8e-12 45.2 7.7 1.7 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase 7TMR-DISM_7TM PF07695.6 gi|529076993|ref|YP_008375996.1| - 0.012 15.2 4.0 0.035 13.7 0.2 2.2 2 0 0 2 2 2 0 7TM diverse intracellular signalling AAA_18 PF13238.1 gi|529076994|ref|YP_008375997.1| - 2.2e-21 76.5 0.1 2.8e-21 76.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|529076994|ref|YP_008375997.1| - 2e-15 57.7 0.1 2.9e-15 57.1 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|529076994|ref|YP_008375997.1| - 3.3e-09 36.7 0.6 1.6e-05 24.8 0.4 2.1 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|529076994|ref|YP_008375997.1| - 5.2e-06 26.5 2.5 7.8e-05 22.6 0.3 2.2 1 1 1 2 2 2 1 AAA domain ADK PF00406.17 gi|529076994|ref|YP_008375997.1| - 0.00078 19.3 0.2 0.35 10.7 0.0 2.2 2 0 0 2 2 2 2 Adenylate kinase AAA_19 PF13245.1 gi|529076994|ref|YP_008375997.1| - 0.0051 16.5 0.7 0.015 15.0 0.5 1.7 1 0 0 1 1 1 1 Part of AAA domain SKI PF01202.17 gi|529076994|ref|YP_008375997.1| - 0.0099 15.7 0.1 0.052 13.4 0.1 1.9 2 0 0 2 2 2 1 Shikimate kinase AAA_22 PF13401.1 gi|529076994|ref|YP_008375997.1| - 0.013 15.6 0.1 0.018 15.1 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|529076994|ref|YP_008375997.1| - 0.023 14.9 0.1 0.069 13.3 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) dNK PF01712.14 gi|529076994|ref|YP_008375997.1| - 0.024 14.5 0.0 0.031 14.1 0.0 1.2 1 0 0 1 1 1 0 Deoxynucleoside kinase CoaE PF01121.15 gi|529076994|ref|YP_008375997.1| - 0.025 13.9 0.6 2.7 7.3 0.0 2.2 2 0 0 2 2 2 0 Dephospho-CoA kinase NTPase_1 PF03266.10 gi|529076994|ref|YP_008375997.1| - 0.03 14.0 0.7 0.045 13.4 0.5 1.6 1 1 0 1 1 1 0 NTPase Zeta_toxin PF06414.7 gi|529076994|ref|YP_008375997.1| - 0.091 11.8 0.2 0.41 9.7 0.0 2.0 2 1 1 3 3 3 0 Zeta toxin KaiC PF06745.8 gi|529076994|ref|YP_008375997.1| - 0.092 11.8 0.7 0.58 9.2 0.1 2.0 2 0 0 2 2 2 0 KaiC Thymidylate_kin PF02223.12 gi|529076994|ref|YP_008375997.1| - 0.14 11.5 0.2 5.5 6.3 0.0 2.2 2 0 0 2 2 2 0 Thymidylate kinase KTI12 PF08433.5 gi|529076994|ref|YP_008375997.1| - 0.18 10.9 0.3 0.64 9.1 0.1 1.8 1 1 1 2 2 2 0 Chromatin associated protein KTI12 Aminotran_1_2 PF00155.16 gi|529076995|ref|YP_008375998.1| - 5.6e-61 206.4 0.0 6.3e-61 206.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|529076995|ref|YP_008375998.1| - 0.00023 19.5 0.0 0.00035 18.9 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme LysR_substrate PF03466.15 gi|529076995|ref|YP_008375998.1| - 0.023 13.8 0.2 0.38 9.8 0.0 2.8 2 1 0 2 2 2 0 LysR substrate binding domain Beta_elim_lyase PF01212.16 gi|529076995|ref|YP_008375998.1| - 0.051 12.7 0.0 0.12 11.5 0.0 1.7 1 1 0 1 1 1 0 Beta-eliminating lyase Alliinase_C PF04864.8 gi|529076995|ref|YP_008375998.1| - 0.16 10.5 0.0 0.25 9.9 0.0 1.2 1 0 0 1 1 1 0 Allinase AAA PF00004.24 gi|529076996|ref|YP_008375999.1| - 1.6e-44 151.2 0.1 1.6e-44 151.2 0.0 2.4 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|529076996|ref|YP_008375999.1| - 7.2e-08 32.5 0.0 7.2e-08 32.5 0.0 2.3 3 1 0 3 3 2 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|529076996|ref|YP_008375999.1| - 2.8e-07 29.8 0.1 7.7e-07 28.3 0.0 1.7 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|529076996|ref|YP_008375999.1| - 6e-07 29.6 1.6 3.6e-05 23.8 0.2 2.8 2 1 0 2 2 1 1 AAA domain AAA_16 PF13191.1 gi|529076996|ref|YP_008375999.1| - 6.5e-07 29.5 1.5 5.5e-05 23.2 0.1 3.3 1 1 1 2 2 2 1 AAA ATPase domain AAA_17 PF13207.1 gi|529076996|ref|YP_008375999.1| - 1.3e-05 26.0 1.6 4.9e-05 24.1 0.0 2.5 3 1 0 3 3 2 1 AAA domain AAA_5 PF07728.9 gi|529076996|ref|YP_008375999.1| - 1.9e-05 24.4 2.5 6.7e-05 22.6 0.2 2.8 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|529076996|ref|YP_008375999.1| - 0.00018 21.3 0.1 0.00094 19.0 0.1 2.3 1 1 1 2 2 1 1 AAA domain NACHT PF05729.7 gi|529076996|ref|YP_008375999.1| - 0.00026 20.6 0.4 0.022 14.4 0.0 2.5 1 1 0 2 2 2 1 NACHT domain AAA_19 PF13245.1 gi|529076996|ref|YP_008375999.1| - 0.00032 20.3 0.2 0.001 18.7 0.2 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_14 PF13173.1 gi|529076996|ref|YP_008375999.1| - 0.00035 20.4 0.1 0.0014 18.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|529076996|ref|YP_008375999.1| - 0.001 18.5 0.0 0.0027 17.1 0.0 1.7 1 0 0 1 1 1 1 IstB-like ATP binding protein TIP49 PF06068.8 gi|529076996|ref|YP_008375999.1| - 0.0012 17.6 2.4 0.0024 16.6 0.0 2.4 2 1 0 2 2 2 1 TIP49 C-terminus ATG16 PF08614.6 gi|529076996|ref|YP_008375999.1| - 0.0014 18.5 12.6 0.0014 18.5 8.7 2.5 1 1 1 2 2 2 1 Autophagy protein 16 (ATG16) Mg_chelatase PF01078.16 gi|529076996|ref|YP_008375999.1| - 0.0014 17.8 0.3 0.0062 15.7 0.1 2.0 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|529076996|ref|YP_008375999.1| - 0.002 17.5 1.0 0.04 13.3 0.2 2.8 2 1 0 2 2 1 1 Sigma-54 interaction domain Sigma54_activ_2 PF14532.1 gi|529076996|ref|YP_008375999.1| - 0.0023 18.0 0.2 0.011 15.8 0.0 2.3 2 1 0 2 2 2 1 Sigma-54 interaction domain AAA_18 PF13238.1 gi|529076996|ref|YP_008375999.1| - 0.0039 17.4 3.3 0.02 15.1 0.0 2.7 2 1 0 2 2 2 1 AAA domain DUF815 PF05673.8 gi|529076996|ref|YP_008375999.1| - 0.0045 15.9 0.0 0.012 14.6 0.0 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_28 PF13521.1 gi|529076996|ref|YP_008375999.1| - 0.0049 16.8 1.1 0.012 15.5 0.0 2.4 2 1 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|529076996|ref|YP_008375999.1| - 0.0075 15.3 0.2 0.022 13.8 0.0 1.9 2 0 0 2 2 2 1 Zeta toxin AAA_3 PF07726.6 gi|529076996|ref|YP_008375999.1| - 0.008 15.7 1.2 0.022 14.3 0.0 2.4 3 2 1 4 4 1 1 ATPase family associated with various cellular activities (AAA) CPT PF07931.7 gi|529076996|ref|YP_008375999.1| - 0.0085 15.7 0.1 0.019 14.5 0.0 1.7 2 0 0 2 2 1 1 Chloramphenicol phosphotransferase-like protein AAA_25 PF13481.1 gi|529076996|ref|YP_008375999.1| - 0.0099 15.2 5.5 0.18 11.2 0.1 3.1 2 1 1 3 3 3 1 AAA domain bZIP_1 PF00170.16 gi|529076996|ref|YP_008375999.1| - 0.01 15.7 14.8 0.055 13.4 6.1 2.7 1 1 1 2 2 2 0 bZIP transcription factor Torsin PF06309.6 gi|529076996|ref|YP_008375999.1| - 0.011 15.6 0.1 0.049 13.5 0.0 2.0 2 0 0 2 2 2 0 Torsin AAA_11 PF13086.1 gi|529076996|ref|YP_008375999.1| - 0.015 14.8 3.4 0.14 11.7 0.0 2.4 2 1 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|529076996|ref|YP_008375999.1| - 0.017 15.2 0.0 0.043 13.9 0.0 1.7 1 0 0 1 1 1 0 RNA helicase DUF3450 PF11932.3 gi|529076996|ref|YP_008375999.1| - 0.021 14.1 4.6 0.049 12.8 3.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) KaiC PF06745.8 gi|529076996|ref|YP_008375999.1| - 0.022 13.8 6.3 0.29 10.2 0.0 3.4 2 1 1 3 3 3 0 KaiC GrpE PF01025.14 gi|529076996|ref|YP_008375999.1| - 0.034 13.7 14.1 0.022 14.3 8.0 2.1 2 1 0 2 2 1 0 GrpE NB-ARC PF00931.17 gi|529076996|ref|YP_008375999.1| - 0.034 13.0 1.4 0.058 12.2 0.0 2.0 2 0 0 2 2 2 0 NB-ARC domain IncA PF04156.9 gi|529076996|ref|YP_008375999.1| - 0.05 13.1 15.6 1.2 8.6 10.1 2.3 1 1 1 2 2 2 0 IncA protein UPF0079 PF02367.12 gi|529076996|ref|YP_008375999.1| - 0.066 12.8 0.0 0.15 11.6 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Creatininase PF02633.9 gi|529076996|ref|YP_008375999.1| - 0.072 12.1 0.0 0.13 11.3 0.0 1.3 1 0 0 1 1 1 0 Creatinine amidohydrolase DUF4438 PF14505.1 gi|529076996|ref|YP_008375999.1| - 0.081 11.6 0.0 0.13 10.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4438) NTPase_1 PF03266.10 gi|529076996|ref|YP_008375999.1| - 0.082 12.6 2.0 0.63 9.7 0.0 2.9 2 1 1 3 3 3 0 NTPase Atg14 PF10186.4 gi|529076996|ref|YP_008375999.1| - 0.086 11.7 3.5 0.15 10.9 2.4 1.4 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 ATP-synt_ab PF00006.20 gi|529076996|ref|YP_008375999.1| - 0.097 12.1 0.1 1.7 8.0 0.0 2.2 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF3373 PF11853.3 gi|529076996|ref|YP_008375999.1| - 0.098 11.1 3.8 0.16 10.5 2.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3373) ResIII PF04851.10 gi|529076996|ref|YP_008375999.1| - 0.15 11.8 2.2 1.5 8.5 0.0 2.4 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit FTA4 PF13093.1 gi|529076996|ref|YP_008375999.1| - 0.23 10.8 8.5 0.42 10.0 5.9 1.4 1 0 0 1 1 1 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 vATP-synt_E PF01991.13 gi|529076996|ref|YP_008375999.1| - 0.26 10.5 9.8 1.7 7.8 6.8 2.1 1 1 0 1 1 1 0 ATP synthase (E/31 kDa) subunit Cep57_CLD_2 PF14197.1 gi|529076996|ref|YP_008375999.1| - 0.27 11.2 10.8 1.2 9.0 6.2 2.4 2 0 0 2 2 2 0 Centrosome localisation domain of PPC89 ABC_tran PF00005.22 gi|529076996|ref|YP_008375999.1| - 0.3 11.3 0.0 0.3 11.3 0.0 2.8 2 2 0 2 2 1 0 ABC transporter AAA_23 PF13476.1 gi|529076996|ref|YP_008375999.1| - 0.34 11.1 10.1 8.4 6.6 0.0 2.5 2 0 0 2 2 2 0 AAA domain GAS PF13851.1 gi|529076996|ref|YP_008375999.1| - 0.5 9.5 14.2 1.1 8.3 9.5 1.8 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding Viral_P18 PF04521.8 gi|529076996|ref|YP_008375999.1| - 0.7 9.3 3.8 1.8 7.9 2.6 1.7 1 0 0 1 1 1 0 ssRNA positive strand viral 18kD cysteine rich protein DUF2203 PF09969.4 gi|529076996|ref|YP_008375999.1| - 0.92 9.7 4.6 2.3 8.4 1.6 2.7 2 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) CENP-F_leu_zip PF10473.4 gi|529076996|ref|YP_008375999.1| - 1.6 8.6 17.6 4.9 6.9 12.2 1.9 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF4337 PF14235.1 gi|529076996|ref|YP_008375999.1| - 2.2 8.1 5.1 5.5 6.8 3.5 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4337) DUF904 PF06005.7 gi|529076996|ref|YP_008375999.1| - 3.7 7.8 14.8 26 5.2 9.8 2.5 2 1 0 2 2 1 0 Protein of unknown function (DUF904) DUF972 PF06156.8 gi|529076996|ref|YP_008375999.1| - 7.3 6.9 12.9 43 4.5 8.4 2.5 1 1 0 2 2 2 0 Protein of unknown function (DUF972) HTH_24 PF13412.1 gi|529076997|ref|YP_008376000.1| - 1.8e-05 24.0 0.0 2.5e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.12 gi|529076997|ref|YP_008376000.1| - 0.00096 18.6 0.0 0.0012 18.3 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit TrmB PF01978.14 gi|529076997|ref|YP_008376000.1| - 0.0015 18.2 0.1 0.002 17.8 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|529076997|ref|YP_008376000.1| - 0.0029 17.2 0.1 0.0039 16.8 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|529076997|ref|YP_008376000.1| - 0.0055 16.4 0.0 0.0079 15.9 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|529076997|ref|YP_008376000.1| - 0.0069 16.0 0.0 0.009 15.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|529076997|ref|YP_008376000.1| - 0.0082 15.8 0.0 0.011 15.4 0.0 1.2 1 0 0 1 1 1 1 MarR family GntR PF00392.16 gi|529076997|ref|YP_008376000.1| - 0.049 13.0 0.3 0.072 12.5 0.1 1.4 1 1 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_43 PF09904.4 gi|529076997|ref|YP_008376000.1| - 0.098 12.4 0.0 0.11 12.2 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn helix Sulfolobus_pRN PF05584.6 gi|529076997|ref|YP_008376000.1| - 0.1 12.5 0.0 0.13 12.2 0.0 1.1 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein HTH_9 PF08221.6 gi|529076997|ref|YP_008376000.1| - 0.14 12.0 0.0 0.19 11.6 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Metallophos_2 PF12850.2 gi|529076998|ref|YP_008376001.1| - 2.4e-14 53.4 0.1 4.5e-14 52.5 0.1 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|529076998|ref|YP_008376001.1| - 4.2e-11 42.6 1.0 6.3e-11 42.0 0.7 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase AAA_23 PF13476.1 gi|529076999|ref|YP_008376002.1| - 3.4e-14 53.6 80.4 8.6 6.6 55.7 6.5 1 1 0 1 1 1 0 AAA domain AAA_21 PF13304.1 gi|529076999|ref|YP_008376002.1| - 8.2e-13 48.9 0.3 3.3e-07 30.5 0.2 2.8 2 0 0 2 2 2 2 AAA domain AAA_13 PF13166.1 gi|529076999|ref|YP_008376002.1| - 1.2e-12 47.2 54.3 0.013 14.0 11.3 5.6 2 1 3 6 6 6 6 AAA domain AAA_15 PF13175.1 gi|529076999|ref|YP_008376002.1| - 2.2e-10 40.1 0.0 7.7e-05 21.9 0.0 2.7 3 0 0 3 3 3 2 AAA ATPase domain SMC_N PF02463.14 gi|529076999|ref|YP_008376002.1| - 3.4e-10 39.5 49.6 6.7e-09 35.2 34.4 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|529076999|ref|YP_008376002.1| - 4.6e-06 26.0 0.0 7.9e-06 25.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Baculo_PEP_C PF04513.7 gi|529076999|ref|YP_008376002.1| - 8.9e-06 25.5 13.1 0.03 14.1 0.2 4.9 3 1 2 6 6 6 2 Baculovirus polyhedron envelope protein, PEP, C terminus SbcCD_C PF13558.1 gi|529076999|ref|YP_008376002.1| - 2.8e-05 23.9 0.0 8.4e-05 22.4 0.0 1.9 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit DUF3584 PF12128.3 gi|529076999|ref|YP_008376002.1| - 0.00016 19.1 101.5 0.00083 16.8 33.0 3.9 2 1 1 3 3 3 2 Protein of unknown function (DUF3584) Atg14 PF10186.4 gi|529076999|ref|YP_008376002.1| - 0.00026 20.0 79.4 0.0052 15.7 6.5 5.7 1 1 3 5 5 5 2 UV radiation resistance protein and autophagy-related subunit 14 NPV_P10 PF05531.7 gi|529076999|ref|YP_008376002.1| - 0.0015 18.7 21.4 1.5 9.1 0.1 7.1 4 2 2 6 6 6 2 Nucleopolyhedrovirus P10 protein WEMBL PF05701.6 gi|529076999|ref|YP_008376002.1| - 0.0029 16.1 46.9 0.0029 16.1 32.5 4.2 1 1 0 2 2 1 1 Weak chloroplast movement under blue light Reo_sigmaC PF04582.7 gi|529076999|ref|YP_008376002.1| - 0.0076 15.4 17.5 0.39 9.8 0.1 4.3 2 2 0 4 4 4 2 Reovirus sigma C capsid protein ATG16 PF08614.6 gi|529076999|ref|YP_008376002.1| - 0.0095 15.7 13.5 0.0095 15.7 9.4 6.3 2 2 2 5 5 4 1 Autophagy protein 16 (ATG16) Prefoldin PF02996.12 gi|529076999|ref|YP_008376002.1| - 0.014 15.0 1.0 0.014 15.0 0.7 9.5 5 3 4 10 10 10 0 Prefoldin subunit Spc7 PF08317.6 gi|529076999|ref|YP_008376002.1| - 0.018 13.7 82.3 0.036 12.7 12.2 5.7 2 2 4 6 6 6 0 Spc7 kinetochore protein GAS PF13851.1 gi|529076999|ref|YP_008376002.1| - 0.018 14.2 78.7 0.35 10.0 4.2 5.3 2 2 3 5 5 5 0 Growth-arrest specific micro-tubule binding Laminin_II PF06009.7 gi|529076999|ref|YP_008376002.1| - 0.02 14.6 38.6 0.017 14.8 3.6 5.9 2 1 2 5 5 5 0 Laminin Domain II AAA_27 PF13514.1 gi|529076999|ref|YP_008376002.1| - 0.028 12.1 111.1 0.15 9.7 51.0 3.3 1 1 1 2 2 2 0 AAA domain IncA PF04156.9 gi|529076999|ref|YP_008376002.1| - 0.11 12.0 123.8 0.067 12.7 5.2 7.0 1 1 5 6 6 5 0 IncA protein TPR_MLP1_2 PF07926.7 gi|529076999|ref|YP_008376002.1| - 0.16 11.7 90.7 0.33 10.7 5.3 7.9 2 2 5 7 7 7 0 TPR/MLP1/MLP2-like protein DUF342 PF03961.8 gi|529076999|ref|YP_008376002.1| - 0.17 10.2 59.7 0.16 10.3 2.6 5.5 1 1 3 6 6 6 0 Protein of unknown function (DUF342) ABC_tran PF00005.22 gi|529076999|ref|YP_008376002.1| - 0.18 12.0 0.0 0.18 12.0 0.0 4.7 2 1 0 2 2 1 0 ABC transporter DUF4201 PF13870.1 gi|529076999|ref|YP_008376002.1| - 0.4 10.0 83.4 0.12 11.7 9.3 7.0 3 2 3 7 7 7 0 Domain of unknown function (DUF4201) AAA_22 PF13401.1 gi|529076999|ref|YP_008376002.1| - 0.71 10.0 0.0 0.71 10.0 0.0 4.8 4 1 1 6 6 6 0 AAA domain EzrA PF06160.7 gi|529076999|ref|YP_008376002.1| - 2 6.5 69.2 0.014 13.6 6.5 4.9 1 1 3 5 5 5 0 Septation ring formation regulator, EzrA Laminin_I PF06008.9 gi|529076999|ref|YP_008376002.1| - 2.4 7.3 80.9 3 7.1 14.3 5.4 1 1 3 4 4 4 0 Laminin Domain I DUF1664 PF07889.7 gi|529076999|ref|YP_008376002.1| - 4.3 7.1 37.8 0.15 11.8 0.5 6.4 3 2 4 7 7 7 0 Protein of unknown function (DUF1664) BLOC1_2 PF10046.4 gi|529076999|ref|YP_008376002.1| - 4.7 7.4 46.0 5.3 7.2 0.5 8.2 4 2 4 8 8 8 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF948 PF06103.6 gi|529076999|ref|YP_008376002.1| - 4.8 7.1 14.6 5.9 6.8 0.5 5.7 5 1 0 5 5 5 0 Bacterial protein of unknown function (DUF948) MarR_2 PF12802.2 gi|529077000|ref|YP_008376003.1| - 0.0011 18.6 0.3 0.0019 17.8 0.2 1.6 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|529077000|ref|YP_008376003.1| - 0.011 15.4 0.7 0.02 14.6 0.4 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain Vault PF01505.13 gi|529077000|ref|YP_008376003.1| - 0.23 11.5 2.1 0.59 10.2 0.0 2.3 2 1 0 2 2 2 0 Major Vault Protein repeat DUF2910 PF11139.3 gi|529077001|ref|YP_008376004.1| - 0.06 12.4 0.8 0.065 12.3 0.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2910) Cu-oxidase_2 PF07731.9 gi|529077002|ref|YP_008376005.1| - 0.11 11.9 0.1 0.12 11.8 0.0 1.1 1 0 0 1 1 1 0 Multicopper oxidase DNA_pol_B PF00136.16 gi|529077003|ref|YP_008376006.1| - 1.2e-56 192.4 0.0 1.9e-37 129.1 0.0 2.2 2 0 0 2 2 2 2 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|529077003|ref|YP_008376006.1| - 3.9e-32 111.4 0.0 5.9e-32 110.8 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain Hint_2 PF13403.1 gi|529077003|ref|YP_008376006.1| - 6.7e-06 26.1 0.0 5.4e-05 23.1 0.0 2.1 1 1 0 1 1 1 1 Hint domain PT-HINT PF07591.6 gi|529077003|ref|YP_008376006.1| - 1.7e-05 24.7 0.0 0.0013 18.6 0.0 2.7 2 0 0 2 2 2 1 Pretoxin HINT domain LAGLIDADG_3 PF14528.1 gi|529077003|ref|YP_008376006.1| - 0.00024 21.2 0.1 0.00063 19.9 0.1 1.7 1 0 0 1 1 1 1 LAGLIDADG-like domain ABC_tran PF00005.22 gi|529077004|ref|YP_008376007.1| - 3.7e-16 59.6 0.0 1.3e-15 57.9 0.0 1.8 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|529077004|ref|YP_008376007.1| - 2e-06 27.9 0.0 0.00021 21.3 0.0 2.1 1 1 1 2 2 2 1 AAA domain SMC_N PF02463.14 gi|529077004|ref|YP_008376007.1| - 3.4e-06 26.4 0.9 0.015 14.5 0.0 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|529077004|ref|YP_008376007.1| - 0.00015 21.9 0.0 0.071 13.3 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|529077004|ref|YP_008376007.1| - 0.00016 22.4 1.4 0.0012 19.6 0.0 2.5 2 2 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|529077004|ref|YP_008376007.1| - 0.0015 18.2 0.1 0.84 9.3 0.0 2.5 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_29 PF13555.1 gi|529077004|ref|YP_008376007.1| - 0.0019 17.6 0.1 0.0034 16.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|529077004|ref|YP_008376007.1| - 0.0031 17.6 0.0 0.34 11.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|529077004|ref|YP_008376007.1| - 0.0048 17.2 2.5 0.065 13.5 0.1 2.2 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|529077004|ref|YP_008376007.1| - 0.011 15.6 0.0 0.016 15.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|529077004|ref|YP_008376007.1| - 0.014 14.8 0.0 0.036 13.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|529077004|ref|YP_008376007.1| - 0.015 14.4 0.0 0.026 13.6 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_18 PF13238.1 gi|529077004|ref|YP_008376007.1| - 0.077 13.3 0.5 0.21 11.9 0.1 2.1 2 1 0 2 2 2 0 AAA domain AAA_13 PF13166.1 gi|529077004|ref|YP_008376007.1| - 0.078 11.4 0.0 0.09 11.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|529077004|ref|YP_008376007.1| - 0.14 12.0 0.0 1.4 8.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|529077004|ref|YP_008376007.1| - 3.5 6.9 6.3 17 4.6 4.4 2.0 1 1 0 1 1 1 0 AAA-like domain UPF0051 PF01458.12 gi|529077005|ref|YP_008376008.1| - 1e-69 234.5 0.7 1.4e-69 234.0 0.5 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.12 gi|529077006|ref|YP_008376009.1| - 1.6e-66 224.0 1.5 2.1e-66 223.6 1.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) Not3 PF04065.10 gi|529077007|ref|YP_008376010.1| - 0.011 14.9 0.9 0.018 14.3 0.7 1.3 1 0 0 1 1 1 0 Not1 N-terminal domain, CCR4-Not complex component Rubrerythrin PF02915.12 gi|529077007|ref|YP_008376010.1| - 0.023 15.0 0.9 0.029 14.6 0.6 1.2 1 0 0 1 1 1 0 Rubrerythrin Pex19 PF04614.7 gi|529077007|ref|YP_008376010.1| - 0.032 13.8 0.9 0.054 13.1 0.6 1.3 1 1 0 1 1 1 0 Pex19 protein family DUF1957 PF09210.6 gi|529077007|ref|YP_008376010.1| - 0.066 13.2 0.9 0.32 11.0 0.2 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF1957) Metal_resist PF13801.1 gi|529077007|ref|YP_008376010.1| - 1.2 9.1 7.3 0.58 10.1 2.2 2.2 2 1 0 2 2 2 0 Heavy-metal resistance Fe_dep_repress PF01325.14 gi|529077008|ref|YP_008376011.1| - 8.5e-18 64.0 0.0 1.3e-17 63.4 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.10 gi|529077008|ref|YP_008376011.1| - 1.8e-12 46.7 0.0 3.8e-12 45.6 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain HTH_27 PF13463.1 gi|529077008|ref|YP_008376011.1| - 5.5e-06 26.6 0.1 2.5e-05 24.5 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|529077008|ref|YP_008376011.1| - 3.7e-05 23.2 0.0 8e-05 22.2 0.0 1.6 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|529077008|ref|YP_008376011.1| - 0.0008 19.0 0.0 0.0012 18.4 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|529077008|ref|YP_008376011.1| - 0.0011 18.3 0.0 0.0017 17.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|529077008|ref|YP_008376011.1| - 0.0013 18.3 0.0 0.0021 17.7 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|529077008|ref|YP_008376011.1| - 0.0019 17.9 0.0 0.0047 16.6 0.0 1.8 2 1 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_20 PF12840.2 gi|529077008|ref|YP_008376011.1| - 0.0035 17.1 0.0 0.0064 16.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|529077008|ref|YP_008376011.1| - 0.004 17.2 0.0 0.0062 16.6 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_AsnC-type PF13404.1 gi|529077008|ref|YP_008376011.1| - 0.0091 15.5 0.0 0.02 14.4 0.0 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_IclR PF09339.5 gi|529077008|ref|YP_008376011.1| - 0.036 13.6 0.0 0.066 12.8 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_13 PF11972.3 gi|529077008|ref|YP_008376011.1| - 0.088 12.6 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain N6_Mtase PF02384.11 gi|529077009|ref|YP_008376012.1| - 1e-102 343.4 0.0 1.4e-102 343.0 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.3 gi|529077009|ref|YP_008376012.1| - 9.2e-33 113.5 1.3 9.2e-33 113.5 0.9 2.2 2 1 0 2 2 2 1 HsdM N-terminal domain Methyltransf_26 PF13659.1 gi|529077009|ref|YP_008376012.1| - 6.3e-09 35.8 0.0 2.3e-08 34.0 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain UPF0020 PF01170.13 gi|529077009|ref|YP_008376012.1| - 4.5e-05 23.0 0.0 8.4e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Nnf1 PF03980.9 gi|529077009|ref|YP_008376012.1| - 3.5 7.6 11.4 15 5.6 1.5 3.4 2 1 0 2 2 2 0 Nnf1 Methylase_S PF01420.14 gi|529077010|ref|YP_008376013.1| - 6.5e-39 133.5 0.1 3.1e-18 66.2 0.1 2.1 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain ASXH PF13919.1 gi|529077010|ref|YP_008376013.1| - 0.014 15.1 0.1 0.96 9.2 0.0 2.3 2 0 0 2 2 2 0 Asx homology domain Ftsk_gamma PF09397.5 gi|529077011|ref|YP_008376014.1| - 0.0026 17.4 0.4 0.0041 16.7 0.2 1.4 1 1 0 1 1 1 1 Ftsk gamma domain HSDR_N PF04313.9 gi|529077012|ref|YP_008376015.1| - 2.1e-36 125.5 0.7 2.1e-36 125.5 0.5 2.4 3 0 0 3 3 3 1 Type I restriction enzyme R protein N terminus (HSDR_N) DUF3387 PF11867.3 gi|529077012|ref|YP_008376015.1| - 1.1e-22 80.4 8.9 2.2e-22 79.4 6.2 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3387) ResIII PF04851.10 gi|529077012|ref|YP_008376015.1| - 6.7e-20 71.6 0.0 1.7e-19 70.3 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|529077012|ref|YP_008376015.1| - 0.0036 16.1 0.0 0.008 15.0 0.0 1.5 1 0 0 1 1 1 1 SNF2 family N-terminal domain DEAD PF00270.24 gi|529077012|ref|YP_008376015.1| - 0.03 13.8 0.0 0.086 12.3 0.0 1.8 1 0 0 1 1 1 0 DEAD/DEAH box helicase DUF45 PF01863.12 gi|529077013|ref|YP_008376016.1| - 1.5e-43 149.0 0.0 1.8e-43 148.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF45 WLM PF08325.5 gi|529077013|ref|YP_008376016.1| - 0.0061 16.4 0.0 0.011 15.6 0.0 1.3 1 0 0 1 1 1 1 WLM domain CSD PF00313.17 gi|529077014|ref|YP_008376017.1| - 2e-17 62.6 0.5 3e-17 62.1 0.4 1.3 1 1 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|529077014|ref|YP_008376017.1| - 0.05 13.3 0.4 0.085 12.5 0.2 1.5 1 1 0 1 1 1 0 S1-like OB_RNB PF08206.6 gi|529077014|ref|YP_008376017.1| - 0.11 11.9 2.8 0.15 11.5 2.0 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain UPF0236 PF06782.6 gi|529077015|ref|YP_008376018.1| - 4.1e-07 28.7 0.1 3.2e-05 22.5 0.0 2.2 2 0 0 2 2 2 2 Uncharacterised protein family (UPF0236) Transposase_mut PF00872.13 gi|529077015|ref|YP_008376018.1| - 9.9e-05 21.0 1.5 0.024 13.2 0.1 2.5 2 1 0 2 2 2 2 Transposase, Mutator family NfeD PF01957.13 gi|529077016|ref|YP_008376019.1| - 1.7e-15 57.4 2.7 2.2e-15 57.0 1.9 1.1 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding DUF308 PF03729.8 gi|529077016|ref|YP_008376019.1| - 0.007 16.3 7.8 0.007 16.3 5.4 2.1 2 0 0 2 2 2 1 Short repeat of unknown function (DUF308) Band_7 PF01145.20 gi|529077017|ref|YP_008376020.1| - 1.4e-37 129.3 3.9 1.4e-37 129.3 2.7 2.2 3 0 0 3 3 3 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|529077017|ref|YP_008376020.1| - 8.5e-05 22.1 0.2 0.00018 21.0 0.2 1.6 1 0 0 1 1 1 1 SPFH domain-Band 7 family DUF719 PF05334.8 gi|529077017|ref|YP_008376020.1| - 0.0033 17.4 4.4 0.55 10.2 0.1 2.8 3 0 0 3 3 3 2 Protein of unknown function (DUF719) HTH_20 PF12840.2 gi|529077018|ref|YP_008376021.1| - 1.1e-12 47.5 0.1 4e-07 29.7 0.0 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_34 PF13601.1 gi|529077018|ref|YP_008376021.1| - 1.3e-09 37.9 0.0 0.00088 19.2 0.0 2.2 2 0 0 2 2 2 2 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|529077018|ref|YP_008376021.1| - 2.5e-08 33.4 0.2 1.2e-07 31.2 0.0 2.0 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|529077018|ref|YP_008376021.1| - 3.6e-08 33.0 0.0 5.4e-06 26.0 0.0 2.3 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.15 gi|529077018|ref|YP_008376021.1| - 5.3e-07 29.2 0.0 0.00046 19.7 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|529077018|ref|YP_008376021.1| - 1.4e-05 24.6 0.0 2.6e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|529077018|ref|YP_008376021.1| - 3.8e-05 23.2 0.0 0.0017 18.0 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|529077018|ref|YP_008376021.1| - 4.5e-05 22.7 0.0 0.00014 21.1 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.14 gi|529077018|ref|YP_008376021.1| - 8.2e-05 22.4 0.0 0.00017 21.4 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.5 gi|529077018|ref|YP_008376021.1| - 0.00058 19.4 2.2 0.0036 16.8 0.1 2.6 2 1 0 2 2 2 1 IclR helix-turn-helix domain Rrf2 PF02082.15 gi|529077018|ref|YP_008376021.1| - 0.0025 17.8 0.0 0.0066 16.5 0.0 1.7 2 0 0 2 2 1 1 Transcriptional regulator HTH_DeoR PF08220.7 gi|529077018|ref|YP_008376021.1| - 0.0059 16.1 0.0 0.012 15.1 0.0 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain GntR PF00392.16 gi|529077018|ref|YP_008376021.1| - 0.0064 15.9 0.0 0.014 14.7 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_36 PF13730.1 gi|529077018|ref|YP_008376021.1| - 0.0065 16.5 0.0 0.012 15.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4423 PF14394.1 gi|529077018|ref|YP_008376021.1| - 0.021 14.3 0.0 2.4 7.6 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) DUF2250 PF10007.4 gi|529077018|ref|YP_008376021.1| - 0.045 13.6 0.0 0.078 12.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_27 PF13463.1 gi|529077018|ref|YP_008376021.1| - 0.063 13.6 0.2 0.27 11.5 0.0 2.2 2 1 0 2 2 1 0 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|529077018|ref|YP_008376021.1| - 0.074 12.8 0.0 0.22 11.3 0.0 1.8 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_1 PF00126.22 gi|529077018|ref|YP_008376021.1| - 0.1 12.3 0.0 0.24 11.1 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_24 PF13412.1 gi|529077019|ref|YP_008376022.1| - 0.00037 19.8 0.9 0.025 13.9 0.4 2.8 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding LexA_DNA_bind PF01726.11 gi|529077019|ref|YP_008376022.1| - 0.00095 18.6 0.0 0.0016 17.9 0.0 1.3 1 0 0 1 1 1 1 LexA DNA binding domain HTH_AsnC-type PF13404.1 gi|529077019|ref|YP_008376022.1| - 0.051 13.1 0.6 0.79 9.3 0.4 2.4 1 1 0 1 1 1 0 AsnC-type helix-turn-helix domain RepL PF05732.6 gi|529077019|ref|YP_008376022.1| - 0.057 12.6 0.0 0.069 12.3 0.0 1.1 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) PEGA PF08308.6 gi|529077019|ref|YP_008376022.1| - 0.082 12.7 0.0 0.1 12.4 0.0 1.2 1 0 0 1 1 1 0 PEGA domain TRAM PF01938.15 gi|529077020|ref|YP_008376023.1| - 7.4e-13 48.0 2.7 7.4e-13 48.0 1.9 1.5 2 0 0 2 2 2 1 TRAM domain CxxCxxCC PF03692.10 gi|529077021|ref|YP_008376024.1| - 1.3e-15 57.6 0.0 3e-15 56.4 0.0 1.7 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain GntR PF00392.16 gi|529077022|ref|YP_008376025.1| - 5.3e-05 22.5 0.1 8e-05 22.0 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.2 gi|529077022|ref|YP_008376025.1| - 7.7e-05 22.4 0.2 0.00017 21.3 0.1 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|529077022|ref|YP_008376025.1| - 0.00011 21.4 0.0 0.00026 20.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|529077022|ref|YP_008376025.1| - 0.00013 21.5 0.2 0.00019 21.0 0.2 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|529077022|ref|YP_008376025.1| - 0.00077 19.1 0.0 0.0011 18.6 0.0 1.3 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.12 gi|529077022|ref|YP_008376025.1| - 0.0011 18.4 0.0 0.0013 18.1 0.0 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_27 PF13463.1 gi|529077022|ref|YP_008376025.1| - 0.0041 17.4 0.1 0.0061 16.8 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_12 PF08461.5 gi|529077022|ref|YP_008376025.1| - 0.0044 16.7 0.3 0.02 14.6 0.1 2.2 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain TrmB PF01978.14 gi|529077022|ref|YP_008376025.1| - 0.0052 16.4 0.1 0.0072 16.0 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|529077022|ref|YP_008376025.1| - 0.04 14.0 0.0 0.056 13.5 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_5 PF01022.15 gi|529077022|ref|YP_008376025.1| - 0.056 13.1 0.0 0.079 12.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.1 gi|529077022|ref|YP_008376025.1| - 0.077 12.7 0.0 0.11 12.2 0.0 1.4 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain PadR PF03551.9 gi|529077022|ref|YP_008376025.1| - 0.082 12.6 0.3 0.11 12.3 0.2 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_36 PF13730.1 gi|529077022|ref|YP_008376025.1| - 0.14 12.3 0.0 0.26 11.4 0.0 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain Methyltransf_11 PF08241.7 gi|529077023|ref|YP_008376026.1| - 5.6e-21 74.8 0.0 8.8e-21 74.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|529077023|ref|YP_008376026.1| - 5.4e-17 62.3 0.0 8.4e-17 61.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|529077023|ref|YP_008376026.1| - 6.8e-17 61.6 0.0 8.5e-17 61.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|529077023|ref|YP_008376026.1| - 1.8e-16 60.0 0.0 2.5e-16 59.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|529077023|ref|YP_008376026.1| - 3e-14 52.7 0.0 4.2e-14 52.2 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|529077023|ref|YP_008376026.1| - 7.4e-14 51.9 0.0 1.2e-13 51.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|529077023|ref|YP_008376026.1| - 5.3e-13 49.2 0.0 8.8e-13 48.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|529077023|ref|YP_008376026.1| - 1.8e-12 47.3 0.0 2.3e-12 46.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|529077023|ref|YP_008376026.1| - 8.5e-07 28.5 0.0 1.1e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW UPF0020 PF01170.13 gi|529077023|ref|YP_008376026.1| - 1.3e-06 28.1 0.0 2.9e-06 26.9 0.0 1.5 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.9 gi|529077023|ref|YP_008376026.1| - 1.4e-06 27.8 0.0 1.8e-06 27.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain RrnaAD PF00398.15 gi|529077023|ref|YP_008376026.1| - 4.9e-05 22.4 0.0 6.7e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_9 PF08003.6 gi|529077023|ref|YP_008376026.1| - 0.00074 18.3 0.0 0.001 17.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) TehB PF03848.9 gi|529077023|ref|YP_008376026.1| - 0.0012 18.0 0.0 0.0016 17.6 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB TPMT PF05724.6 gi|529077023|ref|YP_008376026.1| - 0.0018 17.7 0.0 0.0028 17.1 0.0 1.3 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_20 PF12147.3 gi|529077023|ref|YP_008376026.1| - 0.0026 16.7 0.0 0.0071 15.2 0.0 1.7 2 0 0 2 2 2 1 Putative methyltransferase Methyltransf_4 PF02390.12 gi|529077023|ref|YP_008376026.1| - 0.0027 16.7 0.0 0.0039 16.2 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase CMAS PF02353.15 gi|529077023|ref|YP_008376026.1| - 0.0047 16.0 0.0 0.0064 15.5 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase NodS PF05401.6 gi|529077023|ref|YP_008376026.1| - 0.0056 16.0 0.0 0.0077 15.6 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_15 PF09445.5 gi|529077023|ref|YP_008376026.1| - 0.0085 15.6 0.0 0.011 15.3 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase PCMT PF01135.14 gi|529077023|ref|YP_008376026.1| - 0.021 14.3 0.0 0.028 13.9 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_3 PF01596.12 gi|529077023|ref|YP_008376026.1| - 0.027 13.5 0.0 0.043 12.8 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase FtsJ PF01728.14 gi|529077023|ref|YP_008376026.1| - 0.049 13.6 0.0 0.093 12.7 0.0 1.3 1 1 0 1 1 1 0 FtsJ-like methyltransferase tRNA_U5-meth_tr PF05958.6 gi|529077023|ref|YP_008376026.1| - 0.052 12.2 0.0 0.069 11.8 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase DUF938 PF06080.7 gi|529077023|ref|YP_008376026.1| - 0.067 12.7 0.0 0.098 12.1 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF938) Glycos_transf_2 PF00535.21 gi|529077024|ref|YP_008376027.1| - 2e-13 50.3 0.0 3.1e-13 49.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|529077024|ref|YP_008376027.1| - 1.3e-05 25.1 3.5 6.2e-05 22.8 2.3 2.0 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Amidohydro_2 PF04909.9 gi|529077025|ref|YP_008376028.1| - 4.9e-18 65.6 2.3 1e-17 64.6 1.6 1.5 1 1 0 1 1 1 1 Amidohydrolase Cpn60_TCP1 PF00118.19 gi|529077026|ref|YP_008376029.1| - 1e-137 459.7 2.0 1.1e-137 459.5 1.4 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF422 PF04240.7 gi|529077028|ref|YP_008376031.1| - 3.7e-06 26.5 13.9 8.5e-06 25.3 9.6 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF422) Tic22 PF04278.7 gi|529077028|ref|YP_008376031.1| - 0.21 10.8 0.7 0.26 10.5 0.1 1.4 2 0 0 2 2 2 0 Tic22-like family HDPD PF02924.9 gi|529077028|ref|YP_008376031.1| - 0.74 9.6 4.5 0.19 11.5 0.6 1.8 2 0 0 2 2 2 0 Bacteriophage lambda head decoration protein D PAP2 PF01569.16 gi|529077028|ref|YP_008376031.1| - 2.3 7.9 7.9 6.3 6.4 5.5 1.8 1 1 0 1 1 1 0 PAP2 superfamily PQQ_2 PF13360.1 gi|529077029|ref|YP_008376032.1| - 7.7e-18 64.8 13.6 7.3e-07 28.8 1.6 3.6 1 1 1 3 3 3 3 PQQ-like domain PQQ PF01011.16 gi|529077029|ref|YP_008376032.1| - 2.7e-16 58.1 1.6 9.8e-05 21.6 0.0 5.8 5 0 0 5 5 5 4 PQQ enzyme repeat PQQ_3 PF13570.1 gi|529077029|ref|YP_008376032.1| - 5.2e-15 55.1 37.6 1.5e-08 34.6 0.3 7.9 8 1 0 8 8 8 6 PQQ-like domain TAT_signal PF10518.4 gi|529077029|ref|YP_008376032.1| - 0.079 13.0 2.9 0.27 11.3 2.0 2.0 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence SAM_adeno_trans PF01887.11 gi|529077030|ref|YP_008376033.1| - 4.1e-75 252.1 0.0 4.6e-75 252.0 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase CTP_transf_2 PF01467.21 gi|529077031|ref|YP_008376034.1| - 3.5e-15 56.3 0.0 5.3e-15 55.8 0.0 1.3 1 0 0 1 1 1 1 Cytidylyltransferase Lon_C PF05362.8 gi|529077032|ref|YP_008376035.1| - 1.1e-34 119.5 4.5 1.9e-34 118.8 3.1 1.4 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.1 gi|529077032|ref|YP_008376035.1| - 1.1e-29 103.5 0.0 7.9e-22 77.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|529077032|ref|YP_008376035.1| - 5.9e-16 58.2 0.2 2.8e-10 39.7 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|529077032|ref|YP_008376035.1| - 1.5e-14 53.8 0.0 1.5e-08 34.3 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain MCM PF00493.18 gi|529077032|ref|YP_008376035.1| - 3.7e-11 42.4 1.3 0.004 16.0 0.0 3.3 3 0 0 3 3 3 3 MCM2/3/5 family ChlI PF13541.1 gi|529077032|ref|YP_008376035.1| - 1.6e-09 37.3 1.2 2.9e-09 36.4 0.5 1.7 2 0 0 2 2 1 1 Subunit ChlI of Mg-chelatase AAA_5 PF07728.9 gi|529077032|ref|YP_008376035.1| - 6.2e-09 35.7 0.0 0.0012 18.5 0.0 2.5 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|529077032|ref|YP_008376035.1| - 1.8e-06 28.1 0.0 0.038 14.1 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|529077032|ref|YP_008376035.1| - 7.3e-06 25.2 0.1 0.0028 16.7 0.0 2.4 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus Sigma54_activ_2 PF14532.1 gi|529077032|ref|YP_008376035.1| - 2.7e-05 24.2 0.0 0.17 11.9 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_22 PF13401.1 gi|529077032|ref|YP_008376035.1| - 0.0002 21.5 0.0 0.014 15.5 0.0 2.4 2 0 0 2 2 2 1 AAA domain TIP49 PF06068.8 gi|529077032|ref|YP_008376035.1| - 0.00022 20.0 0.8 0.056 12.1 0.0 2.7 3 0 0 3 3 3 1 TIP49 C-terminus AAA_3 PF07726.6 gi|529077032|ref|YP_008376035.1| - 0.00046 19.7 0.2 0.64 9.6 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|529077032|ref|YP_008376035.1| - 0.002 17.7 0.0 0.038 13.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_PrkA PF08298.6 gi|529077032|ref|YP_008376035.1| - 0.0024 16.6 0.0 0.11 11.1 0.0 2.2 2 0 0 2 2 2 1 PrkA AAA domain AAA_19 PF13245.1 gi|529077032|ref|YP_008376035.1| - 0.0036 17.0 0.0 0.013 15.2 0.0 2.0 2 0 0 2 2 1 1 Part of AAA domain PhoH PF02562.11 gi|529077032|ref|YP_008376035.1| - 0.0042 16.3 0.0 0.0091 15.2 0.0 1.6 1 0 0 1 1 1 1 PhoH-like protein AAA_18 PF13238.1 gi|529077032|ref|YP_008376035.1| - 0.0053 17.0 0.0 0.021 15.1 0.0 2.1 2 0 0 2 2 1 1 AAA domain AAA_33 PF13671.1 gi|529077032|ref|YP_008376035.1| - 0.0055 16.5 0.1 0.037 13.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain T2SE PF00437.15 gi|529077032|ref|YP_008376035.1| - 0.0064 15.4 0.2 0.065 12.1 0.0 2.5 3 0 0 3 3 3 1 Type II/IV secretion system protein NACHT PF05729.7 gi|529077032|ref|YP_008376035.1| - 0.015 14.9 0.0 0.028 14.0 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Zeta_toxin PF06414.7 gi|529077032|ref|YP_008376035.1| - 0.015 14.3 0.0 0.031 13.3 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin DUF815 PF05673.8 gi|529077032|ref|YP_008376035.1| - 0.022 13.6 0.0 0.048 12.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) IstB_IS21 PF01695.12 gi|529077032|ref|YP_008376035.1| - 0.026 13.9 0.0 0.057 12.8 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein TrwB_AAD_bind PF10412.4 gi|529077032|ref|YP_008376035.1| - 0.029 13.0 0.0 0.045 12.3 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain ABC_tran PF00005.22 gi|529077032|ref|YP_008376035.1| - 0.03 14.6 0.0 0.088 13.1 0.0 1.8 1 0 0 1 1 1 0 ABC transporter AAA_17 PF13207.1 gi|529077032|ref|YP_008376035.1| - 0.036 14.8 0.1 0.61 10.9 0.0 2.7 2 0 0 2 2 2 0 AAA domain DUF4116 PF13475.1 gi|529077032|ref|YP_008376035.1| - 0.069 12.6 0.6 1.7 8.1 0.1 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4116) Abi PF02517.11 gi|529077034|ref|YP_008376037.1| - 6.9e-12 45.3 6.0 6.9e-12 45.3 4.1 2.1 2 0 0 2 2 2 1 CAAX protease self-immunity BAAT_C PF08840.6 gi|529077035|ref|YP_008376038.1| - 3e-11 43.4 0.0 3.4e-11 43.2 0.0 1.0 1 0 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal DLH PF01738.13 gi|529077035|ref|YP_008376038.1| - 0.14 11.4 0.0 0.16 11.2 0.0 1.1 1 0 0 1 1 1 0 Dienelactone hydrolase family CBS PF00571.23 gi|529077036|ref|YP_008376039.1| - 1.2e-14 53.8 2.9 6.2e-08 32.3 0.4 2.3 2 0 0 2 2 2 2 CBS domain CMAS PF02353.15 gi|529077037|ref|YP_008376040.1| - 0.0012 18.0 0.0 0.0014 17.7 0.0 1.0 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase GATase_6 PF13522.1 gi|529077039|ref|YP_008376042.1| - 8.6e-23 80.7 0.0 2.5e-22 79.2 0.0 1.8 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|529077039|ref|YP_008376042.1| - 1.2e-20 73.5 0.0 4e-14 52.1 0.0 3.1 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|529077039|ref|YP_008376042.1| - 1.2e-20 73.4 0.0 2.6e-20 72.4 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain Pribosyltran PF00156.22 gi|529077039|ref|YP_008376042.1| - 8.8e-13 48.0 0.1 2e-12 46.9 0.1 1.6 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_4 PF13230.1 gi|529077039|ref|YP_008376042.1| - 0.00013 20.7 0.0 0.00022 20.0 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Ribosomal_L37e PF01907.14 gi|529077040|ref|YP_008376043.1| - 1.2e-25 89.0 12.3 1.3e-25 88.9 8.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|529077040|ref|YP_008376043.1| - 0.0085 15.8 2.0 0.011 15.5 1.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon Ribosomal_L32p PF01783.18 gi|529077040|ref|YP_008376043.1| - 0.053 13.7 1.9 0.071 13.2 1.3 1.3 1 0 0 1 1 1 0 Ribosomal L32p protein family Stc1 PF12898.2 gi|529077040|ref|YP_008376043.1| - 0.06 13.4 1.6 0.067 13.2 1.1 1.1 1 0 0 1 1 1 0 Stc1 domain zinc_ribbon_6 PF14599.1 gi|529077040|ref|YP_008376043.1| - 0.074 12.8 2.1 0.096 12.4 1.4 1.2 1 0 0 1 1 1 0 Zinc-ribbon DUF3716 PF12511.3 gi|529077040|ref|YP_008376043.1| - 0.11 12.1 4.5 0.21 11.2 3.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3716) OrfB_Zn_ribbon PF07282.6 gi|529077040|ref|YP_008376043.1| - 0.17 11.5 3.7 0.22 11.2 2.5 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-RanBP PF00641.13 gi|529077040|ref|YP_008376043.1| - 0.21 10.7 2.1 1.1 8.4 0.1 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others HypA PF01155.14 gi|529077040|ref|YP_008376043.1| - 0.23 11.1 1.4 0.25 11.0 0.9 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DNA_RNApol_7kD PF03604.8 gi|529077040|ref|YP_008376043.1| - 0.32 10.5 4.1 1.2 8.7 0.3 2.1 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.1 gi|529077040|ref|YP_008376043.1| - 0.32 10.2 5.7 1.5 8.1 0.2 2.0 1 1 1 2 2 2 0 zinc-ribbon domain zf-dskA_traR PF01258.12 gi|529077040|ref|YP_008376043.1| - 0.36 10.6 2.7 5.7 6.7 0.1 2.2 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger zf-CSL PF05207.8 gi|529077040|ref|YP_008376043.1| - 0.69 9.4 3.3 2.2 7.8 2.3 1.8 1 1 0 1 1 1 0 CSL zinc finger zinc_ribbon_2 PF13240.1 gi|529077040|ref|YP_008376043.1| - 2.5 7.6 5.7 2.5 7.6 0.3 2.1 1 1 1 2 2 2 0 zinc-ribbon domain zf-C2H2_3 PF13878.1 gi|529077040|ref|YP_008376043.1| - 9 5.9 7.8 7.9 6.1 1.0 2.2 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO LSM PF01423.17 gi|529077041|ref|YP_008376044.1| - 2e-13 49.6 0.3 3e-13 49.1 0.2 1.3 1 1 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|529077041|ref|YP_008376044.1| - 4.2e-05 23.3 0.2 0.00051 19.9 0.0 1.9 1 1 1 2 2 2 1 Ataxin 2 SM domain DUF4444 PF14563.1 gi|529077041|ref|YP_008376044.1| - 0.054 12.9 0.0 0.065 12.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4444) PQQ PF01011.16 gi|529077041|ref|YP_008376044.1| - 0.089 12.3 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 PQQ enzyme repeat DUF2642 PF10842.3 gi|529077041|ref|YP_008376044.1| - 0.14 11.6 0.0 0.19 11.2 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2642) Peptidase_M42 PF05343.9 gi|529077042|ref|YP_008376045.1| - 6.5e-78 261.4 2.9 7.6e-78 261.2 2.0 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|529077042|ref|YP_008376045.1| - 5.2e-12 45.6 0.9 6.4e-12 45.3 0.3 1.4 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M18 PF02127.10 gi|529077042|ref|YP_008376045.1| - 3.5e-05 22.4 0.0 0.0036 15.8 0.0 2.4 2 1 0 2 2 2 2 Aminopeptidase I zinc metalloprotease (M18) Sulf_transp PF04143.9 gi|529077043|ref|YP_008376046.1| - 2.9e-11 43.1 26.9 7.9e-08 32.2 4.5 4.7 4 1 1 5 5 5 2 Sulphur transport Cupredoxin_1 PF13473.1 gi|529077044|ref|YP_008376047.1| - 5.6e-09 35.8 0.0 6.8e-09 35.5 0.0 1.1 1 0 0 1 1 1 1 Cupredoxin-like domain DUF2342 PF10103.4 gi|529077045|ref|YP_008376048.1| - 1.2e-83 280.9 3.8 9.8e-48 162.8 0.2 2.0 1 1 1 2 2 2 2 Uncharacterised conserved protein (DUF2342) Peptidase_MA_2 PF13485.1 gi|529077045|ref|YP_008376048.1| - 0.27 11.2 1.8 1.1 9.3 1.2 2.0 1 1 0 1 1 1 0 Peptidase MA superfamily DUF59 PF01883.14 gi|529077047|ref|YP_008376050.1| - 5.3e-21 74.3 1.0 6.8e-21 74.0 0.7 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF59 Arch_fla_DE PF04659.8 gi|529077048|ref|YP_008376051.1| - 1.2e-24 85.9 0.0 1.7e-24 85.4 0.0 1.1 1 0 0 1 1 1 1 Archaeal flagella protein CbiA PF01656.18 gi|529077049|ref|YP_008376052.1| - 3.1e-30 105.0 0.2 4.2e-30 104.6 0.1 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|529077049|ref|YP_008376052.1| - 2.3e-11 43.9 0.0 6.6e-08 32.6 0.0 2.4 2 0 0 2 2 2 2 AAA domain MipZ PF09140.6 gi|529077049|ref|YP_008376052.1| - 3e-10 39.6 1.5 1.4e-06 27.6 0.1 2.3 2 0 0 2 2 2 2 ATPase MipZ ArsA_ATPase PF02374.10 gi|529077049|ref|YP_008376052.1| - 2.3e-06 26.8 0.5 3.6e-05 22.9 0.2 2.2 1 1 0 1 1 1 1 Anion-transporting ATPase AAA_19 PF13245.1 gi|529077049|ref|YP_008376052.1| - 2.3e-05 24.0 0.6 0.0012 18.4 0.1 2.5 2 0 0 2 2 2 1 Part of AAA domain Fer4_NifH PF00142.13 gi|529077049|ref|YP_008376052.1| - 6.1e-05 22.3 0.1 0.0002 20.6 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family YhjQ PF06564.7 gi|529077049|ref|YP_008376052.1| - 0.00032 20.1 0.2 0.023 14.0 0.0 2.3 2 0 0 2 2 2 1 YhjQ protein AAA_25 PF13481.1 gi|529077049|ref|YP_008376052.1| - 0.00065 19.1 0.1 0.04 13.3 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|529077049|ref|YP_008376052.1| - 0.019 14.5 0.7 0.049 13.2 0.1 2.0 2 1 0 2 2 2 0 AAA domain VirC1 PF07015.6 gi|529077049|ref|YP_008376052.1| - 0.043 12.8 1.4 0.3 10.1 0.1 2.3 2 0 0 2 2 2 0 VirC1 protein PhoH PF02562.11 gi|529077049|ref|YP_008376052.1| - 0.044 13.0 0.0 0.069 12.3 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein AAA_17 PF13207.1 gi|529077049|ref|YP_008376052.1| - 0.054 14.3 0.0 0.42 11.4 0.0 2.3 1 1 0 1 1 1 0 AAA domain LpxK PF02606.9 gi|529077049|ref|YP_008376052.1| - 0.076 11.9 0.1 0.13 11.2 0.0 1.3 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase SRP54 PF00448.17 gi|529077049|ref|YP_008376052.1| - 0.1 12.0 0.6 1.5 8.1 0.0 2.5 3 0 0 3 3 3 0 SRP54-type protein, GTPase domain CheW PF01584.14 gi|529077050|ref|YP_008376053.1| - 1e-19 70.3 0.2 1.5e-19 69.8 0.1 1.2 1 0 0 1 1 1 1 CheW-like domain Pyr_redox PF00070.22 gi|529077051|ref|YP_008376054.1| - 1.5e-11 44.4 1.9 2.8e-09 37.2 0.1 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|529077051|ref|YP_008376054.1| - 2.4e-07 30.8 1.6 3.3e-05 23.8 1.1 2.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|529077051|ref|YP_008376054.1| - 3.3e-07 30.5 1.2 0.03 14.3 0.0 3.8 1 1 2 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|529077051|ref|YP_008376054.1| - 1.5e-05 24.8 5.4 0.18 11.5 0.0 4.3 3 1 1 4 4 4 2 FAD-NAD(P)-binding NAD_binding_8 PF13450.1 gi|529077051|ref|YP_008376054.1| - 0.0011 18.8 2.8 0.53 10.3 0.0 2.9 3 0 0 3 3 3 2 NAD(P)-binding Rossmann-like domain UDPG_MGDP_dh_N PF03721.9 gi|529077051|ref|YP_008376054.1| - 0.0014 18.0 0.1 0.055 12.8 0.0 2.5 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GARS_N PF02844.10 gi|529077051|ref|YP_008376054.1| - 0.087 13.2 0.0 0.21 12.0 0.0 1.7 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, N domain GHMP_kinases_N PF00288.21 gi|529077052|ref|YP_008376055.1| - 9.2e-10 38.4 1.1 1.6e-09 37.6 0.8 1.4 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|529077052|ref|YP_008376055.1| - 0.0039 17.3 0.0 0.0068 16.5 0.0 1.4 1 0 0 1 1 1 1 GHMP kinases C terminal Amidohydro_4 PF13147.1 gi|529077052|ref|YP_008376055.1| - 0.044 13.8 7.3 0.074 13.0 5.0 1.3 1 1 0 1 1 1 0 Amidohydrolase MOZART2 PF12926.2 gi|529077053|ref|YP_008376056.1| - 0.045 13.3 0.1 10 5.8 0.0 2.2 2 0 0 2 2 2 0 Mitotic-spindle organizing gamma-tubulin ring associated UPF0175 PF03683.8 gi|529077054|ref|YP_008376057.1| - 5.4e-09 35.4 0.1 5.4e-09 35.4 0.1 1.8 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0175) RHH_1 PF01402.16 gi|529077054|ref|YP_008376057.1| - 0.00015 21.4 1.4 0.00034 20.3 0.8 1.8 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family TerB-C PF15615.1 gi|529077054|ref|YP_008376057.1| - 0.029 14.5 0.5 0.037 14.2 0.4 1.1 1 0 0 1 1 1 0 TerB-C domain Oxidored_q1 PF00361.15 gi|529077055|ref|YP_008376058.1| - 2.4e-58 197.5 9.6 2.4e-58 197.5 6.7 2.2 2 0 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|529077055|ref|YP_008376058.1| - 0.087 12.4 2.9 0.09 12.3 0.3 2.3 2 0 0 2 2 2 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1 PF00361.15 gi|529077056|ref|YP_008376059.1| - 1.5e-67 227.7 15.4 3.1e-67 226.6 10.7 1.6 1 0 0 1 1 1 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|529077056|ref|YP_008376059.1| - 0.09 12.3 1.8 0.19 11.2 0.1 2.4 2 0 0 2 2 2 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q5_N PF01059.12 gi|529077056|ref|YP_008376059.1| - 0.36 10.7 0.1 0.36 10.7 0.0 2.9 3 1 0 3 3 3 0 NADH-ubiquinone oxidoreductase chain 4, amino terminus Oxidored_q1 PF00361.15 gi|529077057|ref|YP_008376060.1| - 9.7e-73 244.7 11.7 9.7e-73 244.7 8.1 1.9 2 0 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|529077057|ref|YP_008376060.1| - 5.2e-09 35.5 0.0 1.5e-08 34.0 0.0 1.8 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1_C PF01010.14 gi|529077057|ref|YP_008376060.1| - 0.0043 16.6 0.0 0.014 14.8 0.0 1.8 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I) subunit C-terminus DUF533 PF04391.7 gi|529077057|ref|YP_008376060.1| - 0.63 9.3 2.3 2.6 7.3 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF533) Oxidored_q2 PF00420.19 gi|529077058|ref|YP_008376061.1| - 1.2e-21 76.1 7.1 1.3e-21 76.0 4.9 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2567 PF10821.3 gi|529077058|ref|YP_008376061.1| - 0.044 13.3 0.7 0.055 12.9 0.4 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2567) DUF4059 PF13268.1 gi|529077058|ref|YP_008376061.1| - 0.3 11.3 2.1 0.36 11.0 0.0 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF4059) Oxidored_q3 PF00499.15 gi|529077060|ref|YP_008376063.1| - 6.8e-13 48.6 3.8 9.2e-13 48.1 2.6 1.2 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF4040 PF13244.1 gi|529077060|ref|YP_008376063.1| - 3.2e-05 23.8 10.8 4.3e-05 23.4 7.5 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4040) NAD4L PF06235.6 gi|529077060|ref|YP_008376063.1| - 0.22 11.3 4.8 2.2 8.0 0.1 2.3 2 1 0 2 2 2 0 NADH dehydrogenase subunit 4L (NAD4L) DUF3098 PF11297.3 gi|529077060|ref|YP_008376063.1| - 0.68 9.6 3.4 0.36 10.5 0.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3098) IncA PF04156.9 gi|529077060|ref|YP_008376063.1| - 1.2 8.7 13.3 0.097 12.2 4.6 1.9 1 1 1 2 2 2 0 IncA protein Glucos_trans_II PF14264.1 gi|529077060|ref|YP_008376063.1| - 4.5 6.1 10.7 5.2 5.9 7.4 1.0 1 0 0 1 1 1 0 Glucosyl transferase GtrII DUF1418 PF07214.7 gi|529077060|ref|YP_008376063.1| - 5.9 6.5 8.5 5.4 6.7 5.5 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1418) DUF456 PF04306.8 gi|529077061|ref|YP_008376064.1| - 1.4e-27 96.4 25.5 1.4e-27 96.4 17.7 1.7 1 1 1 2 2 2 1 Protein of unknown function (DUF456) Antitoxin-MazE PF04014.13 gi|529077062|ref|YP_008376065.1| - 6.6e-10 38.4 0.1 8.1e-10 38.2 0.1 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE PIN PF01850.16 gi|529077064|ref|YP_008376067.1| - 1e-06 29.0 0.5 1.1e-06 28.9 0.4 1.1 1 0 0 1 1 1 1 PIN domain Fer4 PF00037.22 gi|529077065|ref|YP_008376068.1| - 9.3e-13 47.1 9.3 3.9e-07 29.3 1.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|529077065|ref|YP_008376068.1| - 1.9e-11 44.1 11.0 3e-11 43.5 7.6 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|529077065|ref|YP_008376068.1| - 4.2e-10 39.7 9.1 7.4e-10 38.9 6.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|529077065|ref|YP_008376068.1| - 1.3e-09 37.7 9.7 1.9e-09 37.2 6.7 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|529077065|ref|YP_008376068.1| - 1.5e-09 37.4 11.4 2.6e-09 36.7 7.9 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|529077065|ref|YP_008376068.1| - 2e-09 38.0 5.0 1.3e-05 25.7 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|529077065|ref|YP_008376068.1| - 7.5e-09 35.4 20.3 3.4e-07 30.2 7.7 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|529077065|ref|YP_008376068.1| - 4.6e-08 32.5 12.9 0.0006 19.5 1.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|529077065|ref|YP_008376068.1| - 1.2e-07 31.1 10.1 0.00033 20.3 1.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|529077065|ref|YP_008376068.1| - 6.5e-07 29.1 9.8 0.0018 18.4 1.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|529077065|ref|YP_008376068.1| - 1.7e-05 25.0 12.4 0.0029 17.9 1.1 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|529077065|ref|YP_008376068.1| - 6.9e-05 23.1 12.6 0.021 15.2 1.6 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|529077065|ref|YP_008376068.1| - 0.00015 22.0 14.2 0.0036 17.7 2.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|529077065|ref|YP_008376068.1| - 0.00022 21.7 4.6 0.23 12.0 0.5 2.5 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|529077065|ref|YP_008376068.1| - 0.0096 16.2 10.2 0.41 11.0 0.9 2.6 2 0 0 2 2 2 2 4Fe-4S single cluster domain c-SKI_SMAD_bind PF08782.5 gi|529077065|ref|YP_008376068.1| - 2.7 8.1 6.9 5.6 7.1 0.6 2.2 1 1 1 2 2 2 0 c-SKI Smad4 binding domain NADHdh PF00146.16 gi|529077066|ref|YP_008376069.1| - 1.2e-86 290.6 10.7 1.5e-86 290.2 7.4 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Complex1_49kDa PF00346.14 gi|529077067|ref|YP_008376070.1| - 1.3e-63 214.5 0.0 2.8e-40 138.0 0.0 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.14 gi|529077067|ref|YP_008376070.1| - 3.6e-28 97.8 0.0 6.6e-28 96.9 0.0 1.5 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Oxidored_q6 PF01058.17 gi|529077068|ref|YP_008376071.1| - 6.4e-21 74.3 0.1 9.3e-21 73.8 0.1 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Oxidored_q4 PF00507.14 gi|529077069|ref|YP_008376072.1| - 2.6e-27 94.5 0.1 3.7e-27 94.1 0.1 1.2 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DuoxA PF10204.4 gi|529077069|ref|YP_008376072.1| - 0.52 9.3 4.0 0.32 10.0 1.3 1.6 2 0 0 2 2 2 0 Dual oxidase maturation factor AIRC PF00731.15 gi|529077070|ref|YP_008376073.1| - 8e-50 168.0 0.0 1.1e-49 167.5 0.0 1.2 1 0 0 1 1 1 1 AIR carboxylase ATP-grasp PF02222.17 gi|529077071|ref|YP_008376074.1| - 1.3e-48 164.6 0.0 2e-48 164.0 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|529077071|ref|YP_008376074.1| - 3.5e-23 82.2 0.0 6.1e-23 81.5 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|529077071|ref|YP_008376074.1| - 5.9e-07 28.5 0.0 1.2e-06 27.5 0.0 1.4 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon 2-Hacid_dh_C PF02826.14 gi|529077071|ref|YP_008376074.1| - 2.1e-06 27.0 0.0 3.4e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ATP-grasp_5 PF13549.1 gi|529077071|ref|YP_008376074.1| - 0.00028 20.1 0.0 0.00057 19.1 0.0 1.4 1 1 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|529077071|ref|YP_008376074.1| - 0.00063 19.1 0.0 0.011 15.0 0.0 2.2 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus CPSase_L_D2 PF02786.12 gi|529077071|ref|YP_008376074.1| - 0.0018 17.6 0.0 0.0022 17.2 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain 3HCDH_N PF02737.13 gi|529077071|ref|YP_008376074.1| - 0.0067 16.0 0.0 0.011 15.4 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XdhC_C PF13478.1 gi|529077071|ref|YP_008376074.1| - 0.027 14.7 0.0 0.056 13.7 0.0 1.5 1 0 0 1 1 1 0 XdhC Rossmann domain NAD_binding_10 PF13460.1 gi|529077071|ref|YP_008376074.1| - 0.061 13.3 0.2 0.21 11.5 0.0 1.9 2 0 0 2 2 2 0 NADH(P)-binding ATP-grasp_3 PF02655.9 gi|529077071|ref|YP_008376074.1| - 0.086 12.7 0.0 0.33 10.8 0.0 1.9 1 1 0 1 1 1 0 ATP-grasp domain TrkA_N PF02254.13 gi|529077071|ref|YP_008376074.1| - 0.13 12.2 0.0 0.28 11.2 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain PMT_2 PF13231.1 gi|529077072|ref|YP_008376075.1| - 6.8e-11 42.3 3.5 6.8e-11 42.3 2.4 3.0 3 0 0 3 3 3 2 Dolichyl-phosphate-mannose-protein mannosyltransferase Aminotran_1_2 PF00155.16 gi|529077073|ref|YP_008376076.1| - 1.7e-65 221.3 0.0 2e-65 221.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|529077073|ref|YP_008376076.1| - 3.6e-09 36.1 0.0 7.3e-08 31.8 0.0 2.0 2 0 0 2 2 2 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|529077073|ref|YP_008376076.1| - 7.9e-05 21.0 0.0 0.00012 20.4 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|529077073|ref|YP_008376076.1| - 0.047 12.7 0.1 0.083 11.9 0.0 1.4 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|529077073|ref|YP_008376076.1| - 0.079 11.6 0.0 0.14 10.8 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class-V DinB_2 PF12867.2 gi|529077073|ref|YP_008376076.1| - 0.17 12.2 0.4 44 4.4 0.0 3.0 2 1 0 3 3 3 0 DinB superfamily CTP_transf_2 PF01467.21 gi|529077074|ref|YP_008376077.1| - 2.8e-13 50.2 0.3 3.9e-13 49.7 0.2 1.4 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|529077074|ref|YP_008376077.1| - 0.026 14.1 0.0 0.048 13.2 0.0 1.6 1 0 0 1 1 1 0 FAD synthetase Prok-JAB PF14464.1 gi|529077075|ref|YP_008376078.1| - 1.5e-14 53.3 0.1 2.1e-14 52.9 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain RadC PF04002.10 gi|529077075|ref|YP_008376078.1| - 0.00049 19.7 0.0 0.00077 19.1 0.0 1.2 1 0 0 1 1 1 1 RadC-like JAB domain JAB PF01398.16 gi|529077075|ref|YP_008376078.1| - 0.017 14.8 0.0 0.047 13.4 0.0 1.7 1 1 0 1 1 1 0 JAB1/Mov34/MPN/PAD-1 ubiquitin protease Toxin-JAB1 PF15659.1 gi|529077075|ref|YP_008376078.1| - 0.054 13.3 0.0 0.076 12.9 0.0 1.2 1 0 0 1 1 1 0 JAB-like toxin 1 tRNA_anti-codon PF01336.20 gi|529077076|ref|YP_008376079.1| - 4.6e-12 45.6 0.2 8.5e-12 44.7 0.1 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DHH PF01368.15 gi|529077076|ref|YP_008376079.1| - 4.9e-10 39.2 0.1 8.3e-10 38.4 0.1 1.3 1 0 0 1 1 1 1 DHH family S1 PF00575.18 gi|529077076|ref|YP_008376079.1| - 2.8e-05 24.0 0.2 2.8e-05 24.0 0.2 1.9 2 0 0 2 2 2 1 S1 RNA binding domain tRNA_anti_2 PF13742.1 gi|529077076|ref|YP_008376079.1| - 0.0082 15.9 0.0 0.015 15.1 0.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Rep_fac-A_3 PF08661.6 gi|529077076|ref|YP_008376079.1| - 0.03 14.2 0.0 0.069 13.0 0.0 1.5 1 0 0 1 1 1 0 Replication factor A protein 3 Prenyltrans_1 PF13243.1 gi|529077076|ref|YP_008376079.1| - 0.12 12.4 0.0 0.26 11.2 0.0 1.5 1 0 0 1 1 1 0 Prenyltransferase-like PLDc_2 PF13091.1 gi|529077077|ref|YP_008376080.1| - 3.5e-34 117.2 0.0 1.6e-17 63.4 0.0 2.2 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.17 gi|529077077|ref|YP_008376080.1| - 1.5e-07 31.0 6.4 2.9e-06 26.9 0.3 2.9 3 0 0 3 3 3 2 Phospholipase D Active site motif LTD PF00932.14 gi|529077077|ref|YP_008376080.1| - 0.00078 19.5 0.9 0.0016 18.4 0.2 1.9 2 0 0 2 2 2 1 Lamin Tail Domain Regulator_TrmB PF11495.3 gi|529077077|ref|YP_008376080.1| - 0.0014 17.6 0.2 1.4 7.8 0.0 2.3 2 0 0 2 2 2 2 Archaeal transcriptional regulator TrmB DUF1669 PF07894.7 gi|529077077|ref|YP_008376080.1| - 0.032 13.4 0.0 0.24 10.5 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1669) PP_kinase_C PF13090.1 gi|529077077|ref|YP_008376080.1| - 0.08 11.5 0.2 4.6 5.7 0.0 2.2 2 0 0 2 2 2 0 Polyphosphate kinase C-terminal domain HEAT_2 PF13646.1 gi|529077078|ref|YP_008376081.1| - 5.3e-23 81.1 14.5 5.4e-13 49.0 5.1 4.2 1 1 3 4 4 4 2 HEAT repeats HEAT_PBS PF03130.11 gi|529077078|ref|YP_008376081.1| - 3.9e-15 54.7 16.8 5.2e-05 23.3 0.4 6.0 6 1 0 6 6 6 4 PBS lyase HEAT-like repeat HEAT PF02985.17 gi|529077078|ref|YP_008376081.1| - 9.2e-07 28.4 2.2 0.016 15.2 0.0 4.1 4 0 0 4 4 4 2 HEAT repeat HEAT_EZ PF13513.1 gi|529077078|ref|YP_008376081.1| - 2.1e-06 28.0 11.4 0.011 16.2 0.9 4.5 3 1 1 4 4 4 2 HEAT-like repeat Arm PF00514.18 gi|529077078|ref|YP_008376081.1| - 0.00081 19.1 0.2 3.6 7.5 0.0 3.5 2 1 1 3 3 3 1 Armadillo/beta-catenin-like repeat Ribonucleas_3_2 PF11469.3 gi|529077078|ref|YP_008376081.1| - 0.03 14.5 0.3 0.073 13.2 0.2 1.7 1 0 0 1 1 1 0 Ribonuclease III Adaptin_N PF01602.15 gi|529077078|ref|YP_008376081.1| - 0.11 10.8 0.0 0.42 8.8 0.0 1.8 1 1 1 2 2 2 0 Adaptin N terminal region Taq-exonuc PF09281.5 gi|529077078|ref|YP_008376081.1| - 0.33 11.0 7.5 0.069 13.2 0.7 2.9 2 2 2 4 4 4 0 Taq polymerase, exonuclease CDP-OH_P_transf PF01066.16 gi|529077079|ref|YP_008376082.1| - 1.2e-09 38.3 14.3 5.5e-09 36.2 9.9 2.3 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase Na_Ca_ex PF01699.19 gi|529077079|ref|YP_008376082.1| - 4.7 6.8 11.6 0.026 14.1 1.7 2.0 3 0 0 3 3 3 0 Sodium/calcium exchanger protein Copper-bind PF00127.15 gi|529077080|ref|YP_008376083.1| - 1.1e-11 44.7 0.0 1.9e-11 44.0 0.0 1.3 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|529077080|ref|YP_008376083.1| - 0.00028 20.7 0.0 0.34 10.8 0.0 2.1 2 0 0 2 2 2 2 Cupredoxin-like domain PKD PF00801.15 gi|529077080|ref|YP_008376083.1| - 0.066 12.9 3.6 0.068 12.9 0.1 2.1 1 1 1 2 2 2 0 PKD domain TAT_signal PF10518.4 gi|529077080|ref|YP_008376083.1| - 0.19 11.7 5.1 0.55 10.3 3.5 1.9 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Ribosomal_S3Ae PF01015.13 gi|529077081|ref|YP_008376084.1| - 5.4e-70 234.7 0.2 6.4e-70 234.4 0.2 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family ERCC4 PF02732.10 gi|529077081|ref|YP_008376084.1| - 0.06 13.0 0.1 0.09 12.5 0.1 1.3 1 0 0 1 1 1 0 ERCC4 domain OSCP PF00213.13 gi|529077082|ref|YP_008376085.1| - 0.005 16.7 0.1 0.0058 16.5 0.0 1.1 1 0 0 1 1 1 1 ATP synthase delta (OSCP) subunit DUF1014 PF06244.7 gi|529077082|ref|YP_008376085.1| - 0.11 12.7 0.9 0.15 12.2 0.6 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1014) LytR_C PF13399.1 gi|529077082|ref|YP_008376085.1| - 0.14 12.5 2.9 0.54 10.6 1.0 2.0 1 1 1 2 2 2 0 LytR cell envelope-related transcriptional attenuator TPR_14 PF13428.1 gi|529077083|ref|YP_008376086.1| - 0.01 16.4 0.1 0.01 16.4 0.1 4.7 4 2 1 5 5 5 0 Tetratricopeptide repeat Ribosomal_S15 PF00312.17 gi|529077084|ref|YP_008376087.1| - 4.1e-24 84.1 0.1 5.5e-24 83.7 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 Ribosomal_S13_N PF08069.7 gi|529077084|ref|YP_008376087.1| - 4.7e-13 48.7 0.0 7.7e-13 48.0 0.0 1.4 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Pex19 PF04614.7 gi|529077084|ref|YP_008376087.1| - 0.022 14.3 0.9 3.2 7.2 0.1 2.0 1 1 1 2 2 2 0 Pex19 protein family Asn_synthase PF00733.16 gi|529077085|ref|YP_008376088.1| - 1e-37 130.0 0.9 1.6e-37 129.3 0.6 1.3 1 0 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.12 gi|529077085|ref|YP_008376088.1| - 0.038 12.9 0.0 0.06 12.2 0.0 1.3 1 0 0 1 1 1 0 NAD synthase DUF1441 PF07278.6 gi|529077085|ref|YP_008376088.1| - 0.11 12.0 0.1 0.21 11.2 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1441) PHP_C PF13263.1 gi|529077086|ref|YP_008376089.1| - 1.2e-22 79.1 0.3 5.4e-22 77.0 0.2 2.0 2 0 0 2 2 2 1 PHP-associated PHP PF02811.14 gi|529077086|ref|YP_008376089.1| - 3.2e-17 62.8 0.0 7.3e-17 61.6 0.0 1.7 1 1 0 1 1 1 1 PHP domain PhnG PF06754.7 gi|529077086|ref|YP_008376089.1| - 0.047 13.3 0.7 2.6 7.6 0.0 2.3 2 0 0 2 2 2 0 Phosphonate metabolism protein PhnG Radical_SAM PF04055.16 gi|529077087|ref|YP_008376090.1| - 3.5e-17 63.0 0.4 1.6e-16 60.9 0.1 2.1 1 1 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|529077087|ref|YP_008376090.1| - 5.3e-06 26.5 0.0 1.1e-05 25.6 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|529077087|ref|YP_008376090.1| - 0.00023 21.1 0.0 0.0012 18.9 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain PaaB PF06243.6 gi|529077088|ref|YP_008376091.1| - 3.4e-14 52.7 0.2 4.7e-14 52.2 0.1 1.2 1 0 0 1 1 1 1 Phenylacetic acid degradation B Rubredoxin PF00301.15 gi|529077088|ref|YP_008376091.1| - 0.015 15.1 0.0 0.022 14.5 0.0 1.3 1 0 0 1 1 1 0 Rubredoxin DpnD-PcfM PF14207.1 gi|529077088|ref|YP_008376091.1| - 0.17 11.6 0.4 0.31 10.8 0.0 1.7 2 0 0 2 2 2 0 DpnD/PcfM-like protein HTH_20 PF12840.2 gi|529077089|ref|YP_008376092.1| - 1.4e-11 43.9 0.2 3.3e-11 42.7 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|529077089|ref|YP_008376092.1| - 2.2e-05 23.9 0.4 4.5e-05 22.9 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|529077089|ref|YP_008376092.1| - 0.0015 18.2 0.0 0.0026 17.4 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB FUR PF01475.14 gi|529077089|ref|YP_008376092.1| - 0.028 14.3 0.0 0.034 14.0 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_27 PF13463.1 gi|529077089|ref|YP_008376092.1| - 0.077 13.3 0.0 0.12 12.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|529077089|ref|YP_008376092.1| - 0.085 12.2 0.1 0.15 11.5 0.0 1.5 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF742 PF05331.6 gi|529077089|ref|YP_008376092.1| - 0.091 12.3 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF742) DUF1127 PF06568.6 gi|529077090|ref|YP_008376093.1| - 0.058 12.8 0.2 0.11 11.9 0.1 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1127) DUF4233 PF14017.1 gi|529077090|ref|YP_008376093.1| - 0.2 11.5 2.6 0.25 11.2 1.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4233) COX14 PF14880.1 gi|529077090|ref|YP_008376093.1| - 1.7 8.3 5.7 1.3 8.7 0.3 2.2 2 0 0 2 2 2 0 Cytochrome oxidase c assembly DUF3353 PF11833.3 gi|529077091|ref|YP_008376094.1| - 0.29 10.5 1.4 0.31 10.4 1.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3353) Copper-bind PF00127.15 gi|529077092|ref|YP_008376095.1| - 7.6e-13 48.5 0.0 3.2e-12 46.5 0.0 1.9 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|529077092|ref|YP_008376095.1| - 0.019 14.8 0.0 0.033 14.0 0.0 1.4 1 1 0 1 1 1 0 Cupredoxin-like domain DUF826 PF05696.6 gi|529077093|ref|YP_008376096.1| - 0.0051 16.9 12.8 0.28 11.3 2.4 2.7 1 1 2 3 3 3 2 Protein of unknown function (DUF826) DUF445 PF04286.7 gi|529077093|ref|YP_008376096.1| - 0.042 13.3 2.2 0.063 12.8 1.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF445) WASH-7_mid PF14744.1 gi|529077093|ref|YP_008376096.1| - 0.071 11.9 0.4 0.099 11.4 0.3 1.3 1 0 0 1 1 1 0 WASH complex subunit 7 Met_synt_B12 PF02965.12 gi|529077093|ref|YP_008376096.1| - 0.16 11.1 1.5 1 8.4 1.0 2.0 1 1 0 1 1 1 0 Vitamin B12 dependent methionine synthase, activation domain Mmp37 PF09139.6 gi|529077093|ref|YP_008376096.1| - 0.21 10.5 0.6 0.28 10.1 0.4 1.1 1 0 0 1 1 1 0 Mitochondrial matrix Mmp37 DUF668 PF05003.7 gi|529077093|ref|YP_008376096.1| - 0.27 11.4 1.2 0.75 10.0 0.8 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF668) EnY2 PF10163.4 gi|529077093|ref|YP_008376096.1| - 0.42 10.5 5.6 2.2 8.2 0.8 2.6 1 1 1 2 2 2 0 Transcription factor e(y)2 YpjP PF14005.1 gi|529077093|ref|YP_008376096.1| - 0.44 10.3 2.5 0.83 9.4 1.4 1.6 1 1 1 2 2 2 0 YpjP-like protein ARGLU PF15346.1 gi|529077093|ref|YP_008376096.1| - 1.8 8.2 19.1 0.51 10.0 5.0 2.1 1 1 1 2 2 2 0 Arginine and glutamate-rich 1 Spore_II_R PF09551.5 gi|529077093|ref|YP_008376096.1| - 2.8 7.9 5.1 5.4 7.0 3.5 1.5 1 1 0 1 1 1 0 Stage II sporulation protein R (spore_II_R) Peptidase_M29 PF02073.10 gi|529077094|ref|YP_008376097.1| - 1.3e-106 356.7 0.0 1.5e-106 356.5 0.0 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) DUF4388 PF14332.1 gi|529077094|ref|YP_008376097.1| - 0.042 13.7 0.0 0.089 12.6 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4388) Plasmid_stabil PF05016.9 gi|529077095|ref|YP_008376098.1| - 0.00077 19.8 0.1 0.0014 19.0 0.1 1.4 1 1 0 1 1 1 1 Plasmid stabilisation system protein Gp49 PF05973.9 gi|529077095|ref|YP_008376098.1| - 0.053 13.5 0.0 0.064 13.2 0.0 1.2 1 0 0 1 1 1 0 Phage derived protein Gp49-like (DUF891) ILVD_EDD PF00920.16 gi|529077096|ref|YP_008376099.1| - 3.7e-209 695.4 0.0 4.2e-209 695.3 0.0 1.0 1 0 0 1 1 1 1 Dehydratase family GNAT_acetyltr_2 PF13718.1 gi|529077097|ref|YP_008376100.1| - 8.2e-50 168.8 0.0 5e-49 166.2 0.0 2.0 1 1 0 1 1 1 1 GNAT acetyltransferase 2 Helicase_RecD PF05127.9 gi|529077097|ref|YP_008376100.1| - 6.3e-48 162.7 0.0 1.2e-47 161.8 0.0 1.5 1 0 0 1 1 1 1 Helicase DUF1726 PF08351.6 gi|529077097|ref|YP_008376100.1| - 4.4e-22 77.5 0.0 1.3e-21 76.0 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF1726) tRNA_bind_2 PF13725.1 gi|529077097|ref|YP_008376100.1| - 2.7e-12 46.6 0.0 6.7e-12 45.4 0.0 1.6 1 0 0 1 1 1 1 Possible tRNA binding domain Acetyltransf_7 PF13508.1 gi|529077097|ref|YP_008376100.1| - 2e-06 27.8 0.0 4.8e-06 26.6 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|529077097|ref|YP_008376100.1| - 0.00023 21.2 0.0 0.01 15.9 0.0 2.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain AAA_30 PF13604.1 gi|529077097|ref|YP_008376100.1| - 0.00079 19.0 0.4 0.0017 17.9 0.3 1.6 1 0 0 1 1 1 1 AAA domain Acetyltransf_1 PF00583.19 gi|529077097|ref|YP_008376100.1| - 0.099 12.6 0.0 0.25 11.3 0.0 1.7 1 0 0 1 1 1 0 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.1 gi|529077097|ref|YP_008376100.1| - 0.12 12.2 0.0 0.28 11.0 0.0 1.6 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Ribosomal_L7Ae PF01248.21 gi|529077098|ref|YP_008376101.1| - 6.3e-26 89.7 0.0 7.7e-26 89.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.1 gi|529077098|ref|YP_008376101.1| - 0.0046 16.7 0.0 0.006 16.3 0.0 1.2 1 0 0 1 1 1 1 PELOTA RNA binding domain eRF1_3 PF03465.10 gi|529077098|ref|YP_008376101.1| - 0.052 13.8 0.1 0.052 13.8 0.1 1.2 1 0 0 1 1 1 0 eRF1 domain 3 DUF1269 PF06897.7 gi|529077098|ref|YP_008376101.1| - 0.36 10.8 3.2 2.5 8.1 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1269) Ribosomal_S28e PF01200.13 gi|529077099|ref|YP_008376102.1| - 1.7e-27 94.9 2.4 1.8e-27 94.8 1.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L24e PF01246.15 gi|529077100|ref|YP_008376103.1| - 1.7e-24 85.4 0.0 2.4e-24 84.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.9 gi|529077100|ref|YP_008376103.1| - 0.0014 18.2 1.3 0.002 17.7 0.9 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif YHS PF04945.8 gi|529077100|ref|YP_008376103.1| - 0.0053 16.5 0.2 0.012 15.4 0.1 1.6 1 0 0 1 1 1 1 YHS domain Arc_trans_TRASH PF08394.5 gi|529077100|ref|YP_008376103.1| - 0.061 13.4 1.2 0.11 12.6 0.8 1.4 1 0 0 1 1 1 0 Archaeal TRASH domain Meleagrin PF08189.6 gi|529077100|ref|YP_008376103.1| - 0.073 12.5 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Meleagrin/Cygnin family CENP-T PF15511.1 gi|529077100|ref|YP_008376103.1| - 0.63 9.2 21.0 0.64 9.2 14.6 1.0 1 0 0 1 1 1 0 Centromere kinetochore component CENP-T CobT PF06213.7 gi|529077100|ref|YP_008376103.1| - 1.5 7.9 26.8 1.6 7.7 18.6 1.1 1 0 0 1 1 1 0 Cobalamin biosynthesis protein CobT DUF1510 PF07423.6 gi|529077100|ref|YP_008376103.1| - 2.4 7.4 18.7 2.5 7.3 13.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) NDK PF00334.14 gi|529077101|ref|YP_008376104.1| - 1.1e-55 187.0 0.0 1.3e-55 186.8 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase Usp PF00582.21 gi|529077102|ref|YP_008376105.1| - 1.1e-36 126.0 1.7 1.3e-36 125.9 1.2 1.0 1 0 0 1 1 1 1 Universal stress protein family Myosin_N PF02736.14 gi|529077102|ref|YP_008376105.1| - 0.099 12.3 0.2 0.19 11.4 0.2 1.4 1 0 0 1 1 1 0 Myosin N-terminal SH3-like domain Amidohydro_1 PF01979.15 gi|529077103|ref|YP_008376106.1| - 2.2e-22 80.1 1.1 2.5e-20 73.3 0.8 2.1 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|529077103|ref|YP_008376106.1| - 4.9e-09 36.6 12.4 8.3e-09 35.8 8.6 1.4 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|529077103|ref|YP_008376106.1| - 1.9e-06 27.5 0.1 3.8e-06 26.6 0.0 1.6 1 0 0 1 1 1 1 Amidohydrolase A_deaminase PF00962.17 gi|529077103|ref|YP_008376106.1| - 0.00046 19.2 0.0 0.00065 18.7 0.0 1.2 1 0 0 1 1 1 1 Adenosine/AMP deaminase HD PF01966.17 gi|529077104|ref|YP_008376107.1| - 5.1e-10 39.4 3.6 1.5e-09 37.9 2.5 1.9 1 0 0 1 1 1 1 HD domain Clp_N PF02861.15 gi|529077104|ref|YP_008376107.1| - 0.0032 17.3 1.5 2.2 8.2 0.0 4.0 4 0 0 4 4 4 2 Clp amino terminal domain MCH PF02289.11 gi|529077104|ref|YP_008376107.1| - 0.081 11.9 0.1 0.12 11.3 0.1 1.2 1 0 0 1 1 1 0 Cyclohydrolase (MCH) DSPc PF00782.15 gi|529077105|ref|YP_008376108.1| - 0.0011 18.5 0.0 0.0015 18.1 0.0 1.2 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain Y_phosphatase PF00102.22 gi|529077105|ref|YP_008376108.1| - 0.0073 15.6 0.0 0.01 15.1 0.0 1.2 1 0 0 1 1 1 1 Protein-tyrosine phosphatase UPF0052 PF01933.13 gi|529077106|ref|YP_008376109.1| - 4.9e-50 170.5 0.0 7e-50 170.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 Dus PF01207.12 gi|529077107|ref|YP_008376110.1| - 1.5e-08 33.8 2.6 1.1e-07 31.0 1.8 1.9 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.16 gi|529077107|ref|YP_008376110.1| - 0.00012 21.4 0.2 0.0014 17.8 0.0 2.0 1 1 1 2 2 2 2 Histidine biosynthesis protein PEP_mutase PF13714.1 gi|529077107|ref|YP_008376110.1| - 0.0004 19.6 3.3 0.00054 19.2 2.3 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase NMO PF03060.10 gi|529077107|ref|YP_008376110.1| - 0.00051 19.2 0.7 0.00083 18.5 0.5 1.6 1 1 0 1 1 1 1 Nitronate monooxygenase QRPTase_C PF01729.14 gi|529077107|ref|YP_008376110.1| - 0.0047 16.4 0.4 0.0079 15.7 0.3 1.3 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain FMN_dh PF01070.13 gi|529077107|ref|YP_008376110.1| - 0.008 15.0 1.3 0.013 14.3 0.9 1.4 1 0 0 1 1 1 1 FMN-dependent dehydrogenase PcrB PF01884.12 gi|529077107|ref|YP_008376110.1| - 0.019 14.2 0.6 0.071 12.3 0.0 1.9 1 1 1 2 2 2 0 PcrB family Radical_SAM PF04055.16 gi|529077107|ref|YP_008376110.1| - 0.027 14.6 0.1 2.8 8.0 0.0 2.9 1 1 2 3 3 3 0 Radical SAM superfamily IGPS PF00218.16 gi|529077107|ref|YP_008376110.1| - 0.042 12.8 0.1 0.17 10.8 0.0 1.8 1 1 1 2 2 2 0 Indole-3-glycerol phosphate synthase Ribul_P_3_epim PF00834.14 gi|529077107|ref|YP_008376110.1| - 0.13 11.3 0.2 0.27 10.3 0.1 1.5 1 1 0 1 1 1 0 Ribulose-phosphate 3 epimerase family CitG PF01874.11 gi|529077108|ref|YP_008376111.1| - 2.2e-62 210.7 1.1 2.6e-62 210.5 0.8 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase DUF447 PF04289.7 gi|529077109|ref|YP_008376112.1| - 7.5e-40 136.3 0.0 8.7e-40 136.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) Ribosomal_S17e PF00833.13 gi|529077110|ref|YP_008376113.1| - 4.9e-16 58.5 0.0 5.8e-16 58.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal S17 Semialdhyde_dhC PF02774.13 gi|529077112|ref|YP_008376115.1| - 5.8e-32 111.0 0.0 8e-32 110.5 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.19 gi|529077112|ref|YP_008376115.1| - 2.3e-26 92.4 0.0 5.5e-26 91.2 0.0 1.6 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain Gp_dh_C PF02800.15 gi|529077112|ref|YP_008376115.1| - 0.023 14.1 0.0 0.43 10.0 0.0 2.2 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Frag1 PF10277.4 gi|529077113|ref|YP_008376116.1| - 0.011 15.2 1.3 0.018 14.5 0.9 1.4 1 1 0 1 1 1 0 Frag1/DRAM/Sfk1 family 2-Hacid_dh_C PF02826.14 gi|529077114|ref|YP_008376117.1| - 1.5e-52 177.3 0.0 2e-52 176.9 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|529077114|ref|YP_008376117.1| - 4.6e-15 55.2 0.0 5.7e-15 54.9 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TrkA_N PF02254.13 gi|529077114|ref|YP_008376117.1| - 0.023 14.7 0.3 0.2 11.6 0.1 2.4 3 0 0 3 3 3 0 TrkA-N domain ThiF PF00899.16 gi|529077114|ref|YP_008376117.1| - 0.077 12.8 0.6 0.14 11.9 0.4 1.4 1 0 0 1 1 1 0 ThiF family NAD_binding_2 PF03446.10 gi|529077114|ref|YP_008376117.1| - 0.14 12.0 0.0 0.52 10.1 0.0 1.8 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Metal_CEHH PF14455.1 gi|529077114|ref|YP_008376117.1| - 0.16 11.3 0.0 0.27 10.6 0.0 1.2 1 0 0 1 1 1 0 Predicted metal binding domain Response_reg PF00072.19 gi|529077115|ref|YP_008376118.1| - 2e-14 53.5 0.0 3.2e-14 52.8 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain HalX PF08663.5 gi|529077115|ref|YP_008376118.1| - 0.00042 20.2 0.0 0.00097 19.0 0.0 1.6 1 0 0 1 1 1 1 HalX domain DAO PF01266.19 gi|529077116|ref|YP_008376119.1| - 3.9e-13 49.0 4.2 1.1e-06 27.7 0.0 2.3 1 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|529077116|ref|YP_008376119.1| - 1.2e-07 31.7 6.9 1.5e-07 31.5 0.3 2.9 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|529077116|ref|YP_008376119.1| - 1.9e-06 26.5 1.2 0.0026 16.2 1.4 2.3 2 0 0 2 2 2 2 HI0933-like protein FAD_oxidored PF12831.2 gi|529077116|ref|YP_008376119.1| - 4e-05 22.8 5.4 4e-05 22.8 3.7 2.8 2 2 1 4 4 4 1 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|529077116|ref|YP_008376119.1| - 0.00015 20.5 1.1 0.0092 14.6 0.0 2.1 2 0 0 2 2 2 1 Tryptophan halogenase FAD_binding_3 PF01494.14 gi|529077116|ref|YP_008376119.1| - 0.0002 20.5 10.8 0.0027 16.8 0.2 2.4 3 0 0 3 3 2 2 FAD binding domain FAD_binding_2 PF00890.19 gi|529077116|ref|YP_008376119.1| - 0.00071 18.5 3.3 0.0016 17.3 2.3 1.5 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.1 gi|529077116|ref|YP_008376119.1| - 0.00088 19.2 0.7 0.00088 19.2 0.5 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.17 gi|529077116|ref|YP_008376119.1| - 0.0011 17.9 0.9 0.0023 16.8 0.6 1.5 1 0 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_9 PF13454.1 gi|529077116|ref|YP_008376119.1| - 0.002 17.8 0.6 0.089 12.5 0.0 2.5 2 0 0 2 2 2 1 FAD-NAD(P)-binding Thi4 PF01946.12 gi|529077116|ref|YP_008376119.1| - 0.011 14.7 0.1 0.022 13.8 0.1 1.4 1 0 0 1 1 1 0 Thi4 family Pyr_redox PF00070.22 gi|529077116|ref|YP_008376119.1| - 0.013 15.8 0.2 0.6 10.5 0.3 2.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.1 gi|529077116|ref|YP_008376119.1| - 0.14 12.4 0.1 0.3 11.3 0.0 1.7 2 0 0 2 2 2 0 Putative NAD(P)-binding Acetyltransf_1 PF00583.19 gi|529077117|ref|YP_008376120.1| - 2.4e-19 69.1 0.0 3.5e-19 68.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|529077117|ref|YP_008376120.1| - 7.1e-12 45.4 0.1 8.6e-12 45.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|529077117|ref|YP_008376120.1| - 9.7e-11 41.6 0.0 1.3e-10 41.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|529077117|ref|YP_008376120.1| - 1.9e-08 34.2 0.0 2.3e-08 33.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|529077117|ref|YP_008376120.1| - 4.8e-05 23.0 0.0 8.8e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|529077117|ref|YP_008376120.1| - 0.00025 21.0 0.0 0.00032 20.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|529077117|ref|YP_008376120.1| - 0.01 15.7 0.0 0.019 14.8 0.0 1.6 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|529077117|ref|YP_008376120.1| - 0.012 15.7 0.0 0.013 15.6 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|529077117|ref|YP_008376120.1| - 0.11 12.0 0.1 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Glycos_transf_1 PF00534.15 gi|529077118|ref|YP_008376121.1| - 1.9e-13 50.1 0.0 5.6e-13 48.6 0.0 1.8 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|529077118|ref|YP_008376121.1| - 2.7e-11 43.7 0.0 1.7e-10 41.2 0.0 2.2 2 1 1 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|529077118|ref|YP_008376121.1| - 5e-07 29.9 0.0 1.2e-06 28.7 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|529077118|ref|YP_008376121.1| - 5.4e-05 22.9 0.0 8.1e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|529077118|ref|YP_008376121.1| - 5.4e-05 23.3 0.0 0.00012 22.3 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|529077118|ref|YP_008376121.1| - 0.18 11.6 0.0 0.3 10.9 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase 4-like eIF-5_eIF-2B PF01873.12 gi|529077119|ref|YP_008376122.1| - 8.7e-29 99.7 0.0 1.2e-28 99.2 0.0 1.2 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.15 gi|529077119|ref|YP_008376122.1| - 9.4e-08 31.7 0.7 1.4e-07 31.1 0.5 1.3 1 0 0 1 1 1 1 TRAM domain DUF2387 PF09526.5 gi|529077119|ref|YP_008376122.1| - 0.021 14.7 0.2 0.038 13.9 0.1 1.4 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) zf-ribbon_3 PF13248.1 gi|529077119|ref|YP_008376122.1| - 0.05 12.8 1.0 6 6.2 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|529077119|ref|YP_008376122.1| - 0.39 11.0 2.4 8.1 6.8 1.0 2.2 1 1 1 2 2 2 0 Restriction alleviation protein Lar DNA_RNApol_7kD PF03604.8 gi|529077119|ref|YP_008376122.1| - 0.82 9.1 3.4 21 4.7 0.1 2.1 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Serpin PF00079.15 gi|529077120|ref|YP_008376123.1| - 2e-102 343.1 0.0 2.3e-102 342.9 0.0 1.0 1 0 0 1 1 1 1 Serpin (serine protease inhibitor) KH_2 PF07650.12 gi|529077121|ref|YP_008376124.1| - 9.4e-17 60.3 0.1 2.7e-11 42.8 0.2 2.1 2 0 0 2 2 2 2 KH domain KH_5 PF13184.1 gi|529077121|ref|YP_008376124.1| - 3.1e-10 39.7 0.0 8e-10 38.3 0.0 1.7 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.1 gi|529077121|ref|YP_008376124.1| - 5.5e-09 35.5 0.5 0.0035 16.9 0.3 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.24 gi|529077121|ref|YP_008376124.1| - 0.00021 20.8 0.2 0.003 17.1 0.1 2.4 1 1 1 2 2 2 1 KH domain KH_3 PF13014.1 gi|529077121|ref|YP_008376124.1| - 0.024 14.2 0.3 0.28 10.8 0.1 2.4 2 0 0 2 2 2 0 KH domain RNA_pol_Rpb1_5 PF04998.12 gi|529077122|ref|YP_008376125.1| - 6.5e-40 137.1 0.4 4.2e-31 108.2 0.1 2.2 2 0 0 2 2 2 2 RNA polymerase Rpb1, domain 5 LAGLIDADG_3 PF14528.1 gi|529077122|ref|YP_008376125.1| - 2.7e-15 56.3 0.1 1.9e-09 37.6 0.0 2.9 3 0 0 3 3 3 2 LAGLIDADG-like domain Intein_splicing PF14890.1 gi|529077122|ref|YP_008376125.1| - 4.6e-06 25.7 0.0 7.4e-05 21.7 0.0 2.1 1 1 0 1 1 1 1 Intein splicing domain RNA_pol_Rpb1_1 PF04997.7 gi|529077123|ref|YP_008376126.1| - 1.1e-82 277.9 0.0 7.8e-53 179.8 0.0 2.2 2 0 0 2 2 2 2 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|529077123|ref|YP_008376126.1| - 1.1e-64 217.3 0.1 1.9e-64 216.6 0.1 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_4 PF05000.12 gi|529077123|ref|YP_008376126.1| - 1.9e-31 107.9 0.0 4.1e-31 106.9 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_3 PF04983.13 gi|529077123|ref|YP_008376126.1| - 5.6e-30 104.1 0.0 8.8e-30 103.5 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_5 PF04998.12 gi|529077123|ref|YP_008376126.1| - 8.3e-29 100.7 0.0 1.4e-28 99.9 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 zf-ISL3 PF14690.1 gi|529077123|ref|YP_008376126.1| - 5.2 7.1 10.1 0.15 12.0 0.1 2.9 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 RNA_pol_Rpb2_6 PF00562.23 gi|529077124|ref|YP_008376127.1| - 3.5e-123 411.1 0.0 4.7e-123 410.7 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.15 gi|529077124|ref|YP_008376127.1| - 5.2e-28 97.1 0.1 9.4e-28 96.3 0.1 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.8 gi|529077124|ref|YP_008376127.1| - 1.9e-24 85.2 0.7 4.1e-24 84.1 0.5 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.12 gi|529077124|ref|YP_008376127.1| - 2.5e-11 43.3 2.0 5.8e-11 42.1 1.4 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 zf-ribbon_3 PF13248.1 gi|529077124|ref|YP_008376127.1| - 0.0028 16.8 0.2 0.061 12.5 0.0 2.2 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.2 gi|529077124|ref|YP_008376127.1| - 0.003 17.3 0.6 0.0056 16.4 0.4 1.3 1 0 0 1 1 1 1 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|529077124|ref|YP_008376127.1| - 0.009 15.6 1.6 0.018 14.6 1.1 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain NOB1_Zn_bind PF08772.6 gi|529077124|ref|YP_008376127.1| - 0.028 14.2 0.2 0.058 13.2 0.1 1.5 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zinc_ribbon_2 PF13240.1 gi|529077124|ref|YP_008376127.1| - 0.047 13.1 1.2 0.55 9.7 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|529077124|ref|YP_008376127.1| - 0.064 12.7 3.9 0.15 11.5 1.7 2.3 2 1 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Auto_anti-p27 PF06677.7 gi|529077124|ref|YP_008376127.1| - 0.19 11.5 1.1 0.35 10.6 0.7 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) A2L_zn_ribbon PF08792.5 gi|529077124|ref|YP_008376127.1| - 0.37 10.3 2.0 0.65 9.5 1.4 1.4 1 0 0 1 1 1 0 A2L zinc ribbon domain RNA_pol_Rpb2_1 PF04563.10 gi|529077125|ref|YP_008376128.1| - 9e-54 181.4 0.0 1.1e-53 181.1 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.9 gi|529077125|ref|YP_008376128.1| - 4.2e-28 98.0 0.1 7.2e-28 97.2 0.1 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.11 gi|529077125|ref|YP_008376128.1| - 6.5e-23 80.2 0.0 1.3e-22 79.3 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb5_C PF01191.14 gi|529077126|ref|YP_008376129.1| - 2.1e-25 88.1 0.3 2.3e-25 87.9 0.2 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain DUF3006 PF11213.3 gi|529077126|ref|YP_008376129.1| - 0.0043 16.7 0.3 0.097 12.4 0.2 2.3 1 1 0 1 1 1 1 Protein of unknown function (DUF3006) zf-ribbon_3 PF13248.1 gi|529077127|ref|YP_008376130.1| - 3.9e-08 32.2 0.3 6e-08 31.6 0.2 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|529077127|ref|YP_008376130.1| - 1.7e-06 27.7 0.6 2.5e-06 27.1 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|529077127|ref|YP_008376130.1| - 2.5e-06 26.7 0.8 3.8e-06 26.1 0.6 1.3 1 0 0 1 1 1 1 zinc-ribbon domain Dor1 PF04124.7 gi|529077128|ref|YP_008376131.1| - 0.039 12.4 0.3 3.8 5.8 0.0 2.1 2 0 0 2 2 2 0 Dor1-like family ATG16 PF08614.6 gi|529077128|ref|YP_008376131.1| - 0.052 13.3 1.0 0.076 12.8 0.7 1.5 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) Spectrin PF00435.16 gi|529077128|ref|YP_008376131.1| - 0.19 12.0 1.4 6.9 7.0 0.2 2.5 3 0 0 3 3 3 0 Spectrin repeat IncA PF04156.9 gi|529077128|ref|YP_008376131.1| - 0.29 10.7 4.7 0.34 10.4 0.5 2.3 3 0 0 3 3 3 0 IncA protein FUSC PF04632.7 gi|529077128|ref|YP_008376131.1| - 0.51 8.7 4.3 0.46 8.8 0.7 1.9 2 0 0 2 2 2 0 Fusaric acid resistance protein family DivIC PF04977.10 gi|529077128|ref|YP_008376131.1| - 0.87 9.1 5.5 0.23 10.9 1.4 1.7 2 0 0 2 2 2 0 Septum formation initiator Pup PF05639.6 gi|529077128|ref|YP_008376131.1| - 1.4 9.4 4.9 3.9 8.0 1.3 2.5 2 0 0 2 2 2 0 Pup-like protein DUF2312 PF10073.4 gi|529077128|ref|YP_008376131.1| - 2 7.8 4.4 1.2 8.5 1.5 1.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2312) DUF4140 PF13600.1 gi|529077128|ref|YP_008376131.1| - 5.2 7.5 7.5 0.46 10.9 0.6 2.4 3 0 0 3 3 3 0 N-terminal domain of unknown function (DUF4140) ABC2_membrane PF01061.19 gi|529077129|ref|YP_008376132.1| - 1.6e-27 96.0 18.2 1.6e-27 96.0 12.6 1.4 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|529077129|ref|YP_008376132.1| - 1.4e-22 80.1 23.9 1.4e-22 80.1 16.5 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|529077129|ref|YP_008376132.1| - 9.8e-09 34.4 22.7 2.1e-08 33.3 15.1 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|529077129|ref|YP_008376132.1| - 3.1e-05 23.2 19.6 4.5e-05 22.7 13.6 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein MFS_Mycoplasma PF07672.8 gi|529077129|ref|YP_008376132.1| - 1.1 8.3 8.5 1.8 7.6 5.9 1.3 1 0 0 1 1 1 0 Mycoplasma MFS transporter ABC_tran PF00005.22 gi|529077130|ref|YP_008376133.1| - 3.8e-30 104.9 0.0 5.1e-30 104.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|529077130|ref|YP_008376133.1| - 1.5e-17 64.5 0.0 3.5e-10 40.3 0.0 2.8 3 0 0 3 3 3 2 AAA domain AAA_23 PF13476.1 gi|529077130|ref|YP_008376133.1| - 2.3e-05 24.8 0.1 3.6e-05 24.2 0.1 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|529077130|ref|YP_008376133.1| - 0.00064 19.0 0.0 0.041 13.0 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|529077130|ref|YP_008376133.1| - 0.0016 18.4 1.0 0.0045 16.9 0.7 2.0 1 1 0 1 1 1 1 AAA ATPase domain SbcCD_C PF13558.1 gi|529077130|ref|YP_008376133.1| - 0.0022 17.8 0.1 0.0052 16.6 0.1 1.7 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.1 gi|529077130|ref|YP_008376133.1| - 0.005 16.9 0.0 0.014 15.5 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|529077130|ref|YP_008376133.1| - 0.0062 16.0 0.1 0.012 15.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Zeta_toxin PF06414.7 gi|529077130|ref|YP_008376133.1| - 0.012 14.6 0.0 0.023 13.7 0.0 1.5 1 1 0 1 1 1 0 Zeta toxin AAA_15 PF13175.1 gi|529077130|ref|YP_008376133.1| - 0.017 14.1 0.0 0.21 10.5 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain MobB PF03205.9 gi|529077130|ref|YP_008376133.1| - 0.032 13.9 0.1 0.054 13.2 0.1 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Miro PF08477.8 gi|529077130|ref|YP_008376133.1| - 0.033 14.6 0.0 0.074 13.5 0.0 1.6 2 0 0 2 2 1 0 Miro-like protein cobW PF02492.14 gi|529077130|ref|YP_008376133.1| - 0.035 13.5 0.1 0.056 12.8 0.1 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_17 PF13207.1 gi|529077130|ref|YP_008376133.1| - 0.045 14.5 1.2 0.081 13.7 0.9 1.9 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|529077130|ref|YP_008376133.1| - 0.046 13.4 0.9 0.12 12.1 0.6 1.9 1 1 0 1 1 1 0 Part of AAA domain Adeno_IVa2 PF02456.10 gi|529077130|ref|YP_008376133.1| - 0.051 12.2 0.0 0.075 11.6 0.0 1.1 1 0 0 1 1 1 0 Adenovirus IVa2 protein NACHT PF05729.7 gi|529077130|ref|YP_008376133.1| - 0.07 12.7 0.6 0.15 11.7 0.1 1.8 2 0 0 2 2 1 0 NACHT domain T2SE PF00437.15 gi|529077130|ref|YP_008376133.1| - 0.077 11.8 0.1 0.13 11.0 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF3584 PF12128.3 gi|529077130|ref|YP_008376133.1| - 0.098 9.9 0.1 0.13 9.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) NB-ARC PF00931.17 gi|529077130|ref|YP_008376133.1| - 0.11 11.3 0.0 0.17 10.7 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_33 PF13671.1 gi|529077130|ref|YP_008376133.1| - 0.12 12.2 0.1 0.3 10.9 0.1 1.6 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|529077130|ref|YP_008376133.1| - 0.14 11.3 0.0 0.22 10.6 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_25 PF13481.1 gi|529077130|ref|YP_008376133.1| - 0.15 11.4 0.9 0.86 8.9 0.6 2.2 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|529077130|ref|YP_008376133.1| - 0.15 12.0 0.0 0.41 10.6 0.0 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase Arch_ATPase PF01637.13 gi|529077130|ref|YP_008376133.1| - 0.17 11.5 0.0 0.29 10.8 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase KAP_NTPase PF07693.9 gi|529077130|ref|YP_008376133.1| - 0.18 10.7 0.0 0.28 10.1 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain AAA_13 PF13166.1 gi|529077130|ref|YP_008376133.1| - 0.2 10.1 0.0 0.25 9.7 0.0 1.1 1 0 0 1 1 1 0 AAA domain HTH_10 PF04967.7 gi|529077131|ref|YP_008376134.1| - 1.7e-16 59.5 0.0 2.6e-16 58.9 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.7 gi|529077131|ref|YP_008376134.1| - 0.0027 17.1 0.4 0.016 14.6 0.1 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.11 gi|529077131|ref|YP_008376134.1| - 0.0066 15.7 0.0 0.015 14.5 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.1 gi|529077131|ref|YP_008376134.1| - 0.0098 15.5 0.0 0.019 14.6 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_24 PF13412.1 gi|529077131|ref|YP_008376134.1| - 0.01 15.2 0.0 0.021 14.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|529077131|ref|YP_008376134.1| - 0.013 15.2 0.1 0.034 13.9 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_31 PF13560.1 gi|529077131|ref|YP_008376134.1| - 0.059 13.5 0.7 0.059 13.5 0.5 2.1 2 1 1 3 3 3 0 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|529077131|ref|YP_008376134.1| - 0.061 13.2 0.0 0.17 11.8 0.0 1.7 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.15 gi|529077131|ref|YP_008376134.1| - 0.13 11.9 0.1 0.27 10.9 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Aminotran_5 PF00266.14 gi|529077132|ref|YP_008376135.1| - 1.9e-61 207.8 0.0 2.4e-61 207.5 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|529077132|ref|YP_008376135.1| - 0.11 10.8 0.0 0.18 10.0 0.0 1.3 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|529077132|ref|YP_008376135.1| - 0.11 11.6 0.0 0.15 11.1 0.0 1.3 1 1 0 1 1 1 0 Beta-eliminating lyase Ribosomal_S10 PF00338.17 gi|529077133|ref|YP_008376136.1| - 9.2e-29 99.1 0.0 1e-28 99.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e GTP_EFTU PF00009.22 gi|529077134|ref|YP_008376137.1| - 9.2e-60 201.2 0.0 1.3e-59 200.8 0.0 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|529077134|ref|YP_008376137.1| - 2.7e-30 104.4 0.0 1.1e-29 102.5 0.0 2.0 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|529077134|ref|YP_008376137.1| - 1.6e-15 57.0 2.1 7.4e-15 54.8 0.6 2.5 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|529077134|ref|YP_008376137.1| - 6.8e-08 32.4 0.0 1.3e-07 31.5 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|529077134|ref|YP_008376137.1| - 0.00017 22.0 0.2 0.0014 19.0 0.0 2.5 1 1 1 2 2 2 1 Miro-like protein Gtr1_RagA PF04670.7 gi|529077134|ref|YP_008376137.1| - 0.00018 20.7 0.1 0.054 12.6 0.0 2.2 2 0 0 2 2 2 2 Gtr1/RagA G protein conserved region GTP_EFTU_D4 PF14578.1 gi|529077134|ref|YP_008376137.1| - 0.00025 20.6 0.1 0.00091 18.8 0.0 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 4 FeoB_N PF02421.13 gi|529077134|ref|YP_008376137.1| - 0.0037 16.5 0.4 0.11 11.7 0.2 2.7 2 1 0 2 2 2 1 Ferrous iron transport protein B Dynamin_N PF00350.18 gi|529077134|ref|YP_008376137.1| - 0.0069 16.2 0.1 2.7 7.7 0.0 2.3 1 1 1 2 2 2 2 Dynamin family SRPRB PF09439.5 gi|529077134|ref|YP_008376137.1| - 0.0085 15.3 0.0 0.27 10.4 0.0 2.3 1 1 0 1 1 1 1 Signal recognition particle receptor beta subunit Septin PF00735.13 gi|529077134|ref|YP_008376137.1| - 0.0096 14.9 0.0 0.02 13.9 0.0 1.4 1 0 0 1 1 1 1 Septin Ras PF00071.17 gi|529077134|ref|YP_008376137.1| - 0.036 13.4 1.0 0.18 11.1 0.3 2.2 2 1 0 2 2 2 0 Ras family ATP_bind_1 PF03029.12 gi|529077134|ref|YP_008376137.1| - 0.061 12.8 1.4 0.4 10.1 0.6 2.2 2 1 0 2 2 2 0 Conserved hypothetical ATP binding protein SHOCT PF09851.4 gi|529077135|ref|YP_008376138.1| - 0.00017 20.8 0.7 0.00017 20.8 0.5 2.0 2 0 0 2 2 2 1 Short C-terminal domain GGDN PF05165.7 gi|529077135|ref|YP_008376138.1| - 0.00061 18.9 0.6 0.0014 17.7 0.0 1.7 1 1 1 2 2 2 1 GGDN family GvpG PF05120.7 gi|529077135|ref|YP_008376138.1| - 0.32 10.8 2.4 0.75 9.6 1.1 1.9 1 1 1 2 2 2 0 Gas vesicle protein G RhodobacterPufX PF11511.3 gi|529077135|ref|YP_008376138.1| - 2.1 7.7 5.8 3.9 6.9 4.0 1.4 1 0 0 1 1 1 0 Intrinsic membrane protein PufX HAMP PF00672.20 gi|529077135|ref|YP_008376138.1| - 3.3 7.9 9.3 0.68 10.1 2.4 2.7 2 1 0 2 2 2 0 HAMP domain Homoserine_dh PF00742.14 gi|529077136|ref|YP_008376139.1| - 1.5e-47 161.6 0.3 2.6e-47 160.8 0.1 1.5 2 0 0 2 2 2 1 Homoserine dehydrogenase NAD_binding_3 PF03447.11 gi|529077136|ref|YP_008376139.1| - 5.9e-07 29.8 0.5 1.2e-06 28.8 0.3 1.6 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.16 gi|529077136|ref|YP_008376139.1| - 8.9e-06 25.4 0.1 1.5e-05 24.7 0.1 1.3 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DapB_N PF01113.15 gi|529077136|ref|YP_008376139.1| - 0.00041 20.2 0.1 0.00086 19.2 0.1 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus 3HCDH_N PF02737.13 gi|529077136|ref|YP_008376139.1| - 0.0046 16.6 0.2 0.0068 16.0 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|529077136|ref|YP_008376139.1| - 0.056 13.1 0.3 0.1 12.3 0.2 1.6 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.14 gi|529077136|ref|YP_008376139.1| - 0.06 12.4 0.0 0.092 11.8 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|529077136|ref|YP_008376139.1| - 0.069 13.1 0.0 0.29 11.1 0.0 2.0 2 0 0 2 2 2 0 TrkA-N domain ACT PF01842.20 gi|529077137|ref|YP_008376140.1| - 1.6e-05 24.2 1.0 0.00084 18.7 0.0 2.9 2 2 2 4 4 4 1 ACT domain DUF4349 PF14257.1 gi|529077137|ref|YP_008376140.1| - 0.023 13.9 0.2 1.3 8.1 0.3 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4349) Sigma70_r1_1 PF03979.9 gi|529077137|ref|YP_008376140.1| - 0.069 13.0 0.0 0.14 12.1 0.0 1.6 1 0 0 1 1 1 0 Sigma-70 factor, region 1.1 Chorismate_bind PF00425.13 gi|529077138|ref|YP_008376141.1| - 4.4e-76 255.6 0.0 5.5e-76 255.2 0.0 1.1 1 0 0 1 1 1 1 chorismate binding enzyme TPP_enzyme_N PF02776.13 gi|529077139|ref|YP_008376142.1| - 9.5e-32 109.8 4.0 1.9e-31 108.8 1.1 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|529077139|ref|YP_008376142.1| - 1.9e-09 37.3 0.0 4.7e-09 35.9 0.0 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|529077139|ref|YP_008376142.1| - 0.0012 18.6 0.0 0.0031 17.2 0.0 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain DUF4350 PF14258.1 gi|529077139|ref|YP_008376142.1| - 0.19 11.9 1.9 2.7 8.2 0.0 3.6 3 2 0 3 3 3 0 Domain of unknown function (DUF4350) DnaJ PF00226.26 gi|529077140|ref|YP_008376143.1| - 2e-16 59.4 0.1 2.8e-16 59.0 0.1 1.2 1 0 0 1 1 1 1 DnaJ domain RPT PF13446.1 gi|529077140|ref|YP_008376143.1| - 0.012 15.0 0.2 0.018 14.4 0.1 1.3 1 0 0 1 1 1 0 A repeated domain in UCH-protein TrmB PF01978.14 gi|529077141|ref|YP_008376144.1| - 3.8e-17 61.7 0.0 5.1e-17 61.3 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|529077141|ref|YP_008376144.1| - 6e-07 29.0 0.0 1.5e-06 27.7 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|529077141|ref|YP_008376144.1| - 2e-06 27.3 0.0 3.7e-06 26.4 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|529077141|ref|YP_008376144.1| - 1.1e-05 25.0 0.0 1.6e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|529077141|ref|YP_008376144.1| - 5.2e-05 23.4 0.0 0.00011 22.4 0.0 1.6 1 1 0 1 1 1 1 Winged helix DNA-binding domain Penicillinase_R PF03965.11 gi|529077141|ref|YP_008376144.1| - 7.3e-05 22.8 0.0 9.5e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Penicillinase repressor HTH_20 PF12840.2 gi|529077141|ref|YP_008376144.1| - 0.0002 21.0 0.0 0.00036 20.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|529077141|ref|YP_008376144.1| - 0.00022 20.7 0.1 0.00053 19.4 0.0 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|529077141|ref|YP_008376144.1| - 0.00089 18.6 0.0 0.0013 18.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding RuvB_C PF05491.8 gi|529077141|ref|YP_008376144.1| - 0.001 18.6 0.0 0.0018 17.8 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB C-terminus HTH_11 PF08279.7 gi|529077141|ref|YP_008376144.1| - 0.0011 18.5 0.0 0.0018 17.9 0.0 1.4 1 0 0 1 1 1 1 HTH domain Sigma70_r4_2 PF08281.7 gi|529077141|ref|YP_008376144.1| - 0.0026 17.1 0.1 0.022 14.2 0.1 2.3 2 1 0 2 2 2 1 Sigma-70, region 4 HTH_23 PF13384.1 gi|529077141|ref|YP_008376144.1| - 0.0029 17.2 0.0 0.0064 16.1 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|529077141|ref|YP_008376144.1| - 0.008 16.3 0.0 0.011 15.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix PadR PF03551.9 gi|529077141|ref|YP_008376144.1| - 0.0091 15.7 0.2 0.02 14.6 0.1 1.6 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family Rrf2 PF02082.15 gi|529077141|ref|YP_008376144.1| - 0.014 15.4 0.0 0.023 14.7 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator Dimerisation PF08100.6 gi|529077141|ref|YP_008376144.1| - 0.03 14.1 0.0 0.06 13.1 0.0 1.5 1 0 0 1 1 1 0 Dimerisation domain HTH_28 PF13518.1 gi|529077141|ref|YP_008376144.1| - 0.04 13.9 0.5 0.087 12.8 0.0 1.8 2 1 0 2 2 1 0 Helix-turn-helix domain 2OG-Fe_Oxy_2 PF10014.4 gi|529077141|ref|YP_008376144.1| - 0.052 12.9 0.1 0.068 12.5 0.1 1.2 1 0 0 1 1 1 0 2OG-Fe dioxygenase Sigma54_DBD PF04552.8 gi|529077141|ref|YP_008376144.1| - 0.056 12.9 0.0 0.073 12.5 0.0 1.2 1 0 0 1 1 1 0 Sigma-54, DNA binding domain HTH_Crp_2 PF13545.1 gi|529077141|ref|YP_008376144.1| - 0.11 12.3 0.1 0.22 11.3 0.1 1.7 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain Josephin PF02099.12 gi|529077141|ref|YP_008376144.1| - 0.14 11.8 0.1 0.23 11.0 0.0 1.4 1 1 0 1 1 1 0 Josephin Thioredoxin PF00085.15 gi|529077142|ref|YP_008376145.1| - 7.4e-29 99.4 0.0 1.2e-28 98.8 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|529077142|ref|YP_008376145.1| - 2.2e-09 37.4 0.3 4.4e-08 33.3 0.0 2.4 2 1 0 2 2 2 1 Thioredoxin-like domain DSBA PF01323.15 gi|529077142|ref|YP_008376145.1| - 3.9e-07 29.8 2.4 4.4e-06 26.3 0.2 2.2 1 1 2 3 3 3 1 DSBA-like thioredoxin domain Thioredoxin_8 PF13905.1 gi|529077142|ref|YP_008376145.1| - 8.1e-07 29.0 0.0 0.0012 18.9 0.0 2.3 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_7 PF13899.1 gi|529077142|ref|YP_008376145.1| - 1.2e-06 28.4 0.2 2.3e-06 27.5 0.1 1.5 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_9 PF14595.1 gi|529077142|ref|YP_008376145.1| - 0.00011 21.8 0.4 0.00021 20.8 0.3 1.5 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_3 PF13192.1 gi|529077142|ref|YP_008376145.1| - 0.00017 21.3 0.1 0.00028 20.6 0.1 1.4 1 1 0 1 1 1 1 Thioredoxin domain HyaE PF07449.6 gi|529077142|ref|YP_008376145.1| - 0.00046 20.0 0.2 0.0009 19.1 0.0 1.6 2 1 0 2 2 2 1 Hydrogenase-1 expression protein HyaE Thioredoxin_5 PF13743.1 gi|529077142|ref|YP_008376145.1| - 0.001 18.6 0.0 0.0017 17.9 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin DUF836 PF05768.9 gi|529077142|ref|YP_008376145.1| - 0.0047 17.1 0.0 0.0075 16.5 0.0 1.4 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) AhpC-TSA PF00578.16 gi|529077142|ref|YP_008376145.1| - 0.005 16.5 0.2 0.23 11.1 0.0 2.1 1 1 1 2 2 2 1 AhpC/TSA family Glutaredoxin PF00462.19 gi|529077142|ref|YP_008376145.1| - 0.0057 16.6 0.1 0.01 15.8 0.0 1.5 1 0 0 1 1 1 1 Glutaredoxin TraF PF13728.1 gi|529077142|ref|YP_008376145.1| - 0.0088 15.5 0.1 0.017 14.6 0.0 1.5 1 1 0 1 1 1 1 F plasmid transfer operon protein Redoxin PF08534.5 gi|529077142|ref|YP_008376145.1| - 0.033 13.7 0.5 0.88 9.1 0.1 2.1 1 1 1 2 2 2 0 Redoxin Thioredoxin_4 PF13462.1 gi|529077142|ref|YP_008376145.1| - 0.034 14.1 0.3 0.052 13.5 0.2 1.7 1 1 0 1 1 1 0 Thioredoxin TrbC_Ftype PF09673.5 gi|529077142|ref|YP_008376145.1| - 0.035 13.7 0.0 0.059 12.9 0.0 1.3 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin assembly protein UPF0547 PF10571.4 gi|529077143|ref|YP_008376146.1| - 4.3e-05 23.1 1.5 0.00016 21.3 1.0 1.8 1 1 0 1 1 1 1 Uncharacterised protein family UPF0547 PhnA_Zn_Ribbon PF08274.7 gi|529077143|ref|YP_008376146.1| - 0.00013 21.6 2.2 0.015 15.0 0.1 2.2 2 0 0 2 2 2 1 PhnA Zinc-Ribbon DUF2296 PF10058.4 gi|529077143|ref|YP_008376146.1| - 0.00067 19.3 0.1 0.00092 18.9 0.1 1.3 1 0 0 1 1 1 1 Predicted integral membrane metal-binding protein (DUF2296) CpXC PF14353.1 gi|529077143|ref|YP_008376146.1| - 0.0026 17.7 0.2 0.58 10.1 0.0 2.1 2 0 0 2 2 2 1 CpXC protein Nudix_N_2 PF14803.1 gi|529077143|ref|YP_008376146.1| - 0.003 17.2 1.7 0.82 9.4 0.0 2.2 2 0 0 2 2 2 1 Nudix N-terminal Zn-ribbon_8 PF09723.5 gi|529077143|ref|YP_008376146.1| - 0.0038 17.1 1.1 0.74 9.8 0.1 2.2 2 0 0 2 2 2 1 Zinc ribbon domain HypA PF01155.14 gi|529077143|ref|YP_008376146.1| - 0.005 16.5 0.3 0.0055 16.3 0.2 1.2 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zinc_ribbon_5 PF13719.1 gi|529077143|ref|YP_008376146.1| - 0.0067 15.9 1.5 0.013 15.0 1.0 1.6 1 1 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|529077143|ref|YP_008376146.1| - 0.0095 15.6 1.9 0.018 14.6 1.3 1.5 1 1 0 1 1 1 1 zinc-ribbon domain TFIIS_C PF01096.13 gi|529077143|ref|YP_008376146.1| - 0.0098 15.5 2.4 1.2 8.8 0.2 2.1 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) DUF1610 PF07754.6 gi|529077143|ref|YP_008376146.1| - 0.01 15.9 5.6 0.13 12.4 0.7 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-H2C2_2 PF13465.1 gi|529077143|ref|YP_008376146.1| - 0.011 16.0 2.5 0.56 10.6 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double domain ADK_lid PF05191.9 gi|529077143|ref|YP_008376146.1| - 0.013 15.1 2.8 0.38 10.4 0.1 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-ribbon_3 PF13248.1 gi|529077143|ref|YP_008376146.1| - 0.014 14.5 1.1 0.65 9.2 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|529077143|ref|YP_008376146.1| - 0.016 15.0 4.0 0.13 12.1 3.0 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Stc1 PF12898.2 gi|529077143|ref|YP_008376146.1| - 0.017 15.1 0.2 0.02 14.9 0.2 1.2 1 0 0 1 1 1 0 Stc1 domain DUF329 PF03884.9 gi|529077143|ref|YP_008376146.1| - 0.017 14.6 1.3 1.8 8.1 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF329) DZR PF12773.2 gi|529077143|ref|YP_008376146.1| - 0.021 14.6 2.8 0.035 13.9 2.0 1.4 1 1 0 1 1 1 0 Double zinc ribbon zf-C2H2 PF00096.21 gi|529077143|ref|YP_008376146.1| - 0.021 15.1 1.1 0.92 9.9 0.0 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type Ribosomal_L44 PF00935.14 gi|529077143|ref|YP_008376146.1| - 0.03 14.3 0.2 8 6.5 0.0 2.1 2 0 0 2 2 2 0 Ribosomal protein L44 zf-CHY PF05495.7 gi|529077143|ref|YP_008376146.1| - 0.033 14.3 0.2 0.04 14.0 0.1 1.2 1 0 0 1 1 1 0 CHY zinc finger NMD3 PF04981.8 gi|529077143|ref|YP_008376146.1| - 0.036 13.1 0.3 0.036 13.1 0.2 1.0 1 0 0 1 1 1 0 NMD3 family zinc_ribbon_2 PF13240.1 gi|529077143|ref|YP_008376146.1| - 0.036 13.5 1.3 3.4 7.2 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-IS66 PF13005.2 gi|529077143|ref|YP_008376146.1| - 0.055 13.4 0.4 2.4 8.2 0.0 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 A2L_zn_ribbon PF08792.5 gi|529077143|ref|YP_008376146.1| - 0.06 12.8 2.0 4 7.0 0.2 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|529077143|ref|YP_008376146.1| - 0.079 12.2 6.4 0.14 11.5 0.2 2.2 1 1 1 2 2 2 0 TFIIB zinc-binding zf-Mss51 PF13824.1 gi|529077143|ref|YP_008376146.1| - 0.088 12.6 3.6 0.19 11.6 2.5 1.8 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-C2H2_6 PF13912.1 gi|529077143|ref|YP_008376146.1| - 0.093 12.6 1.4 8.5 6.4 0.2 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger DUF4379 PF14311.1 gi|529077143|ref|YP_008376146.1| - 0.095 12.5 3.1 0.11 12.2 1.6 1.5 2 0 0 2 2 1 0 Domain of unknown function (DUF4379) zf-3CxxC PF13695.1 gi|529077143|ref|YP_008376146.1| - 0.13 12.4 1.4 0.64 10.2 1.0 1.9 1 1 0 1 1 1 0 Zinc-binding domain zf-Di19 PF05605.7 gi|529077143|ref|YP_008376146.1| - 0.13 12.3 0.3 4.7 7.4 0.0 2.1 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zf-HIT PF04438.11 gi|529077143|ref|YP_008376146.1| - 0.14 11.8 3.4 0.23 11.1 0.3 2.0 2 0 0 2 2 2 0 HIT zinc finger zinc-ribbons_6 PF07191.7 gi|529077143|ref|YP_008376146.1| - 0.16 11.7 2.3 0.86 9.4 1.6 1.9 1 1 1 2 2 2 0 zinc-ribbons zf-CSL PF05207.8 gi|529077143|ref|YP_008376146.1| - 0.17 11.4 0.6 0.21 11.0 0.3 1.4 1 1 0 1 1 1 0 CSL zinc finger zf-RING_3 PF14369.1 gi|529077143|ref|YP_008376146.1| - 0.19 11.7 5.4 1.9 8.5 3.9 2.1 1 1 1 2 2 2 0 zinc-finger zf-C4_Topoisom PF01396.14 gi|529077143|ref|YP_008376146.1| - 0.19 11.2 1.7 8.2 6.0 0.1 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-C3HC4 PF00097.20 gi|529077143|ref|YP_008376146.1| - 0.19 11.3 1.4 0.28 10.8 1.0 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-RING_4 PF14570.1 gi|529077143|ref|YP_008376146.1| - 0.21 11.2 3.7 0.87 9.2 0.1 2.2 2 0 0 2 2 2 0 RING/Ubox like zinc-binding domain zf-trcl PF13451.1 gi|529077143|ref|YP_008376146.1| - 0.24 11.0 1.5 12 5.5 0.1 2.2 2 0 0 2 2 2 0 Probable zinc-binding domain DUF35_N PF12172.3 gi|529077143|ref|YP_008376146.1| - 0.27 11.1 2.8 11 6.0 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-C3HC4_3 PF13920.1 gi|529077143|ref|YP_008376146.1| - 0.31 10.7 2.1 0.76 9.5 1.5 1.6 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Sgf11 PF08209.6 gi|529077143|ref|YP_008376146.1| - 0.45 9.8 2.4 11 5.3 0.2 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) OrfB_Zn_ribbon PF07282.6 gi|529077143|ref|YP_008376146.1| - 0.51 10.0 2.7 1 9.0 1.9 1.7 1 1 0 1 1 1 0 Putative transposase DNA-binding domain PHD PF00628.24 gi|529077143|ref|YP_008376146.1| - 0.95 9.2 3.4 12 5.7 2.3 2.0 1 1 0 1 1 1 0 PHD-finger zf-ISL3 PF14690.1 gi|529077143|ref|YP_008376146.1| - 1.6 8.8 5.6 2.5 8.2 0.4 2.2 1 1 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-HYPF PF07503.7 gi|529077143|ref|YP_008376146.1| - 1.8 8.0 8.4 86 2.6 5.8 2.5 1 1 0 1 1 1 0 HypF finger DUF2310 PF10071.4 gi|529077143|ref|YP_008376146.1| - 2 7.3 4.1 13 4.6 0.6 2.0 1 1 1 2 2 2 0 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) Rubredoxin PF00301.15 gi|529077143|ref|YP_008376146.1| - 5.5 6.9 7.5 2.2 8.2 0.5 2.2 1 1 1 2 2 2 0 Rubredoxin DNA_ligase_ZBD PF03119.11 gi|529077143|ref|YP_008376146.1| - 6.5 6.5 7.0 8.6 6.1 0.5 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain eIF-5_eIF-2B PF01873.12 gi|529077144|ref|YP_008376147.1| - 3.6e-33 113.8 0.0 4.2e-33 113.6 0.0 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 DNA_RNApol_7kD PF03604.8 gi|529077144|ref|YP_008376147.1| - 0.13 11.7 4.1 3 7.3 3.4 2.1 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit TF_Zn_Ribbon PF08271.7 gi|529077144|ref|YP_008376147.1| - 0.13 11.5 0.6 2.1 7.7 0.1 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|529077144|ref|YP_008376147.1| - 0.14 11.4 0.7 15 4.9 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain UPF0058 PF01893.11 gi|529077145|ref|YP_008376148.1| - 1.3e-20 73.1 0.2 1.5e-20 73.0 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 DUF555 PF04475.7 gi|529077146|ref|YP_008376149.1| - 1.5e-37 127.6 0.0 1.9e-37 127.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF555) zinc_ribbon_2 PF13240.1 gi|529077146|ref|YP_008376149.1| - 0.021 14.2 0.3 0.042 13.3 0.2 1.5 1 0 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|529077146|ref|YP_008376149.1| - 0.052 12.7 0.1 0.099 11.8 0.1 1.4 1 0 0 1 1 1 0 zinc-ribbon domain OGG_N PF07934.7 gi|529077147|ref|YP_008376150.1| - 9e-17 61.1 0.0 1.6e-16 60.3 0.0 1.4 1 0 0 1 1 1 1 8-oxoguanine DNA glycosylase, N-terminal domain HhH-GPD PF00730.20 gi|529077147|ref|YP_008376150.1| - 1.3e-15 57.6 0.0 1.8e-15 57.1 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein PP-binding PF00550.20 gi|529077147|ref|YP_008376150.1| - 0.027 14.7 0.0 0.076 13.2 0.0 1.8 1 0 0 1 1 1 0 Phosphopantetheine attachment site HHH PF00633.18 gi|529077147|ref|YP_008376150.1| - 0.16 11.7 0.2 3 7.7 0.0 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix motif Acylphosphatase PF00708.13 gi|529077148|ref|YP_008376151.1| - 3.2e-29 100.8 0.1 3.5e-29 100.7 0.1 1.0 1 0 0 1 1 1 1 Acylphosphatase Carb_kinase PF01256.12 gi|529077150|ref|YP_008376153.1| - 8.7e-48 162.7 0.7 1.2e-47 162.2 0.5 1.2 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.10 gi|529077150|ref|YP_008376153.1| - 3.6e-42 143.8 0.5 3.6e-42 143.8 0.3 1.8 2 0 0 2 2 2 1 YjeF-related protein N-terminus HK PF02110.10 gi|529077150|ref|YP_008376153.1| - 3.9e-07 29.5 0.0 6.7e-07 28.7 0.0 1.3 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family MMR_HSR1 PF01926.18 gi|529077151|ref|YP_008376154.1| - 5.6e-18 64.9 0.0 3.2e-17 62.5 0.0 2.1 2 0 0 2 2 2 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|529077151|ref|YP_008376154.1| - 5.4e-12 45.5 0.3 4.1e-11 42.6 0.0 2.5 3 1 0 3 3 3 1 Elongation factor Tu GTP binding domain GTP-bdg_N PF13167.1 gi|529077151|ref|YP_008376154.1| - 3e-10 40.1 0.0 7.2e-10 38.8 0.0 1.6 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal cobW PF02492.14 gi|529077151|ref|YP_008376154.1| - 2.3e-06 27.1 0.2 0.00056 19.4 0.0 2.4 1 1 1 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain FeoB_N PF02421.13 gi|529077151|ref|YP_008376154.1| - 5.9e-05 22.3 0.2 0.039 13.2 0.0 2.7 3 0 0 3 3 3 2 Ferrous iron transport protein B Miro PF08477.8 gi|529077151|ref|YP_008376154.1| - 0.00031 21.2 0.0 0.0047 17.4 0.0 2.7 2 1 0 2 2 2 1 Miro-like protein Arf PF00025.16 gi|529077151|ref|YP_008376154.1| - 0.00058 19.1 0.3 0.68 9.1 0.0 2.7 2 1 0 2 2 2 2 ADP-ribosylation factor family AAA_18 PF13238.1 gi|529077151|ref|YP_008376154.1| - 0.0012 19.1 3.2 0.0016 18.7 0.0 2.7 2 1 0 3 3 2 1 AAA domain AAA_17 PF13207.1 gi|529077151|ref|YP_008376154.1| - 0.0012 19.6 3.0 0.0032 18.2 0.0 2.8 2 2 0 2 2 2 1 AAA domain PduV-EutP PF10662.4 gi|529077151|ref|YP_008376154.1| - 0.0044 16.5 0.0 0.27 10.7 0.0 2.3 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation ABC_tran PF00005.22 gi|529077151|ref|YP_008376154.1| - 0.023 15.0 0.0 0.07 13.4 0.0 2.0 1 1 1 2 2 2 0 ABC transporter MobB PF03205.9 gi|529077151|ref|YP_008376154.1| - 0.026 14.2 0.0 0.079 12.6 0.0 1.8 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ArgK PF03308.11 gi|529077151|ref|YP_008376154.1| - 0.03 13.1 0.8 22 3.7 0.0 3.6 3 1 1 4 4 4 0 ArgK protein AAA_16 PF13191.1 gi|529077151|ref|YP_008376154.1| - 0.034 14.1 1.4 0.1 12.5 0.1 2.6 1 1 2 3 3 3 0 AAA ATPase domain AAA_14 PF13173.1 gi|529077151|ref|YP_008376154.1| - 0.038 13.9 0.0 0.11 12.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|529077151|ref|YP_008376154.1| - 0.039 13.1 0.0 0.38 9.9 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|529077151|ref|YP_008376154.1| - 0.056 13.5 0.0 0.34 11.0 0.0 2.3 2 1 0 2 2 2 0 AAA domain Dynamin_N PF00350.18 gi|529077151|ref|YP_008376154.1| - 0.068 12.9 0.2 8.7 6.1 0.0 2.8 2 1 1 3 3 3 0 Dynamin family AAA_33 PF13671.1 gi|529077151|ref|YP_008376154.1| - 0.19 11.5 2.0 0.37 10.6 0.0 2.6 3 1 0 3 3 3 0 AAA domain AAA_23 PF13476.1 gi|529077151|ref|YP_008376154.1| - 3 8.1 5.7 15 5.8 0.0 2.5 2 1 1 3 3 3 0 AAA domain PIN PF01850.16 gi|529077152|ref|YP_008376155.1| - 1.2e-07 32.0 0.7 1.5e-07 31.7 0.5 1.0 1 0 0 1 1 1 1 PIN domain HTH_11 PF08279.7 gi|529077153|ref|YP_008376156.1| - 4e-06 26.3 0.0 5.8e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|529077153|ref|YP_008376156.1| - 1.5e-05 24.7 0.0 2.9e-05 23.7 0.0 1.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|529077153|ref|YP_008376156.1| - 0.0023 17.2 0.0 0.0033 16.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.1 gi|529077153|ref|YP_008376156.1| - 0.0042 16.6 0.0 0.0061 16.1 0.0 1.2 1 0 0 1 1 1 1 Homeodomain-like domain HTH_Mga PF08280.6 gi|529077153|ref|YP_008376156.1| - 0.009 15.7 0.0 0.012 15.3 0.0 1.2 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain TrmB PF01978.14 gi|529077153|ref|YP_008376156.1| - 0.0094 15.6 0.0 0.015 15.0 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|529077153|ref|YP_008376156.1| - 0.012 15.4 0.0 0.014 15.1 0.0 1.1 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_17 PF12728.2 gi|529077153|ref|YP_008376156.1| - 0.012 15.8 0.0 0.026 14.7 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_36 PF13730.1 gi|529077153|ref|YP_008376156.1| - 0.013 15.6 0.0 0.017 15.2 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|529077153|ref|YP_008376156.1| - 0.016 14.8 0.2 0.021 14.4 0.1 1.2 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.15 gi|529077153|ref|YP_008376156.1| - 0.038 14.1 0.0 0.052 13.6 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_AsnC-type PF13404.1 gi|529077153|ref|YP_008376156.1| - 0.039 13.4 0.0 0.084 12.4 0.0 1.6 1 1 1 2 2 2 0 AsnC-type helix-turn-helix domain HTH_27 PF13463.1 gi|529077153|ref|YP_008376156.1| - 0.04 14.2 0.1 0.06 13.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain GerE PF00196.14 gi|529077153|ref|YP_008376156.1| - 0.046 13.0 0.0 0.062 12.6 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_29 PF13551.1 gi|529077153|ref|YP_008376156.1| - 0.048 13.8 0.0 0.053 13.6 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn helix Sigma70_r4 PF04545.11 gi|529077153|ref|YP_008376156.1| - 0.08 12.2 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_42 PF06224.7 gi|529077153|ref|YP_008376156.1| - 0.089 12.1 1.0 16 4.6 0.1 1.9 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_28 PF13518.1 gi|529077153|ref|YP_008376156.1| - 0.098 12.6 0.0 0.13 12.3 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain Penicillinase_R PF03965.11 gi|529077153|ref|YP_008376156.1| - 0.15 12.1 0.0 0.19 11.8 0.0 1.2 1 0 0 1 1 1 0 Penicillinase repressor ThuA PF06283.6 gi|529077154|ref|YP_008376157.1| - 1.1e-34 120.0 0.0 1.3e-34 119.8 0.0 1.0 1 0 0 1 1 1 1 Trehalose utilisation Peptidase_M57 PF12388.3 gi|529077155|ref|YP_008376158.1| - 0.077 12.3 0.2 0.14 11.4 0.1 1.3 1 0 0 1 1 1 0 Dual-action HEIGH metallo-peptidase EF-hand_6 PF13405.1 gi|529077155|ref|YP_008376158.1| - 2.3 8.3 6.4 22 5.2 0.2 3.2 3 0 0 3 3 3 0 EF-hand domain VWA_2 PF13519.1 gi|529077156|ref|YP_008376159.1| - 4.8e-29 101.6 2.5 1.4e-28 100.1 1.7 1.9 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.23 gi|529077156|ref|YP_008376159.1| - 2.8e-23 82.5 0.7 2.8e-23 82.5 0.5 2.1 2 0 0 2 2 2 1 von Willebrand factor type A domain DUF2201 PF09967.4 gi|529077156|ref|YP_008376159.1| - 1.4e-05 25.1 0.5 3.9e-05 23.6 0.1 2.0 2 0 0 2 2 2 1 VWA-like domain (DUF2201) VWA_CoxE PF05762.9 gi|529077156|ref|YP_008376159.1| - 0.0058 15.8 0.9 0.012 14.7 0.1 1.8 2 0 0 2 2 2 1 VWA domain containing CoxE-like protein ThuA PF06283.6 gi|529077157|ref|YP_008376160.1| - 3.7e-13 49.6 0.5 1.7e-09 37.6 0.2 2.1 1 1 1 2 2 2 2 Trehalose utilisation EVE PF01878.13 gi|529077157|ref|YP_008376160.1| - 0.091 12.7 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 EVE domain Rib_5-P_isom_A PF06026.9 gi|529077158|ref|YP_008376161.1| - 3.7e-50 169.5 0.2 4.5e-50 169.3 0.1 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.17 gi|529077158|ref|YP_008376161.1| - 2.3e-05 24.1 0.1 4.3e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 DeoR C terminal sensor domain Sugar-bind PF04198.8 gi|529077158|ref|YP_008376161.1| - 0.092 11.6 0.0 0.12 11.1 0.0 1.2 1 0 0 1 1 1 0 Putative sugar-binding domain Ribul_P_3_epim PF00834.14 gi|529077159|ref|YP_008376162.1| - 1.6e-66 223.2 0.0 1.9e-66 223.0 0.0 1.0 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family His_biosynth PF00977.16 gi|529077159|ref|YP_008376162.1| - 0.00015 21.1 0.0 0.0013 18.0 0.0 2.2 1 1 0 2 2 2 1 Histidine biosynthesis protein Trp_syntA PF00290.15 gi|529077159|ref|YP_008376162.1| - 0.014 13.9 0.0 0.019 13.4 0.0 1.1 1 0 0 1 1 1 0 Tryptophan synthase alpha chain TMP-TENI PF02581.12 gi|529077159|ref|YP_008376162.1| - 0.024 13.7 0.1 0.03 13.4 0.0 1.1 1 0 0 1 1 1 0 Thiamine monophosphate synthase/TENI LysR_substrate PF03466.15 gi|529077159|ref|YP_008376162.1| - 0.028 13.5 0.1 0.045 12.8 0.1 1.3 1 0 0 1 1 1 0 LysR substrate binding domain PEP_mutase PF13714.1 gi|529077159|ref|YP_008376162.1| - 0.053 12.7 0.2 3.6 6.7 0.1 2.3 1 1 1 2 2 2 0 Phosphoenolpyruvate phosphomutase PcrB PF01884.12 gi|529077159|ref|YP_008376162.1| - 0.084 12.1 0.9 0.33 10.1 0.0 2.0 1 1 1 2 2 2 0 PcrB family Pribosyltran PF00156.22 gi|529077160|ref|YP_008376163.1| - 2.7e-12 46.5 0.1 1.1e-10 41.3 0.0 2.6 2 1 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyltran_N PF13793.1 gi|529077160|ref|YP_008376163.1| - 4.6e-09 36.0 0.0 1.4e-07 31.2 0.0 2.3 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase UPRTase PF14681.1 gi|529077160|ref|YP_008376163.1| - 8.4e-06 25.1 0.1 1.3e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|529077160|ref|YP_008376163.1| - 1.3e-05 24.6 0.0 0.00075 18.8 0.0 2.3 1 1 0 1 1 1 1 Phosphoribosyl transferase Pribosyl_synth PF14572.1 gi|529077160|ref|YP_008376163.1| - 5.9e-05 22.9 0.1 0.0001 22.1 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain Cas_Cas02710 PF09670.5 gi|529077161|ref|YP_008376164.1| - 0.00082 18.0 0.0 0.0011 17.6 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas02710) TIM PF00121.13 gi|529077162|ref|YP_008376165.1| - 2.7e-09 36.4 0.0 7.1e-08 31.8 0.0 2.0 1 1 1 2 2 2 2 Triosephosphate isomerase His_biosynth PF00977.16 gi|529077162|ref|YP_008376165.1| - 0.0019 17.4 0.1 0.015 14.5 0.0 2.2 3 0 0 3 3 3 1 Histidine biosynthesis protein ThiG PF05690.9 gi|529077162|ref|YP_008376165.1| - 0.0035 16.4 0.3 0.0058 15.7 0.2 1.3 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG FMN_dh PF01070.13 gi|529077162|ref|YP_008376165.1| - 0.035 12.9 0.5 0.053 12.3 0.3 1.2 1 0 0 1 1 1 0 FMN-dependent dehydrogenase Aldo_ket_red PF00248.16 gi|529077163|ref|YP_008376166.1| - 2.1e-60 203.9 0.0 2.5e-60 203.7 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family PAS_9 PF13426.1 gi|529077164|ref|YP_008376167.1| - 2.1e-33 114.8 0.5 9.7e-21 74.1 0.0 3.8 4 0 0 4 4 3 3 PAS domain PAS PF00989.19 gi|529077164|ref|YP_008376167.1| - 7e-31 106.3 0.2 2.4e-15 56.3 0.0 3.5 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.5 gi|529077164|ref|YP_008376167.1| - 2.4e-23 82.2 13.8 1.3e-11 44.5 0.3 4.0 4 0 0 4 4 4 3 PAS fold Response_reg PF00072.19 gi|529077164|ref|YP_008376167.1| - 6.6e-23 80.8 0.0 1.7e-22 79.4 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.21 gi|529077164|ref|YP_008376167.1| - 2e-20 72.5 0.0 4e-20 71.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|529077164|ref|YP_008376167.1| - 2.6e-19 68.3 0.4 0.00014 21.6 0.0 3.9 3 0 0 3 3 3 3 PAS domain GAF_2 PF13185.1 gi|529077164|ref|YP_008376167.1| - 1e-18 68.2 3.8 1.1e-18 68.1 0.8 2.4 2 0 0 2 2 2 1 GAF domain GAF PF01590.21 gi|529077164|ref|YP_008376167.1| - 2.2e-12 47.3 0.5 3.7e-11 43.3 0.1 3.0 3 0 0 3 3 3 1 GAF domain PAS_3 PF08447.6 gi|529077164|ref|YP_008376167.1| - 1.6e-09 37.7 1.8 1.6e-05 24.8 0.0 3.0 3 0 0 3 3 2 2 PAS fold GAF_3 PF13492.1 gi|529077164|ref|YP_008376167.1| - 3.5e-08 33.6 0.0 8.8e-08 32.3 0.0 1.7 1 0 0 1 1 1 1 GAF domain HisKA PF00512.20 gi|529077164|ref|YP_008376167.1| - 4.8e-08 32.8 0.9 4.2e-07 29.8 0.6 2.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.2 gi|529077164|ref|YP_008376167.1| - 2.2e-07 30.9 1.4 9.1e-05 22.4 0.0 3.7 3 0 0 3 3 3 1 PAS fold HATPase_c_3 PF13589.1 gi|529077164|ref|YP_008376167.1| - 0.013 15.1 0.0 0.035 13.7 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Transaldolase PF00923.14 gi|529077165|ref|YP_008376168.1| - 1.7e-53 181.6 0.0 3.9e-53 180.4 0.0 1.5 1 1 0 1 1 1 1 Transaldolase Transketolase_C PF02780.15 gi|529077166|ref|YP_008376169.1| - 1e-34 119.1 1.6 1.1e-34 118.9 0.1 1.8 3 0 0 3 3 3 1 Transketolase, C-terminal domain Transket_pyr PF02779.19 gi|529077166|ref|YP_008376169.1| - 2.4e-33 115.1 0.0 4.1e-33 114.3 0.0 1.3 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_N PF00456.16 gi|529077167|ref|YP_008376170.1| - 8.6e-55 185.8 0.0 1.2e-54 185.4 0.0 1.2 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain DXP_synthase_N PF13292.1 gi|529077167|ref|YP_008376170.1| - 2.4e-13 49.6 0.0 5.1e-09 35.4 0.0 2.4 1 1 1 2 2 2 2 1-deoxy-D-xylulose-5-phosphate synthase XFP_N PF09364.5 gi|529077167|ref|YP_008376170.1| - 1.1e-08 34.0 0.1 2.4e-08 32.9 0.1 1.4 1 0 0 1 1 1 1 XFP N-terminal domain E1_dh PF00676.15 gi|529077167|ref|YP_008376170.1| - 1.4e-06 27.2 0.0 2e-06 26.7 0.0 1.1 1 0 0 1 1 1 1 Dehydrogenase E1 component TPP_enzyme_C PF02775.16 gi|529077167|ref|YP_008376170.1| - 2.5e-06 27.1 0.0 8.6e-05 22.1 0.0 2.3 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SHOCT PF09851.4 gi|529077167|ref|YP_008376170.1| - 0.075 12.5 0.1 0.2 11.2 0.1 1.7 1 0 0 1 1 1 0 Short C-terminal domain PepSY_2 PF13670.1 gi|529077167|ref|YP_008376170.1| - 0.094 12.6 0.5 17 5.4 0.0 3.2 2 1 1 3 3 3 0 Peptidase propeptide and YPEB domain SBP_bac_8 PF13416.1 gi|529077168|ref|YP_008376171.1| - 1.3e-21 77.6 0.1 1.6e-21 77.3 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|529077168|ref|YP_008376171.1| - 7e-11 42.4 0.3 9.3e-11 42.0 0.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|529077168|ref|YP_008376171.1| - 0.014 15.0 0.2 0.87 9.1 0.1 2.2 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein Glyco_hydro_4 PF02056.11 gi|529077169|ref|YP_008376172.1| - 1.6e-44 151.3 0.0 2.4e-44 150.8 0.0 1.2 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase Glyco_hydro_4C PF11975.3 gi|529077169|ref|YP_008376172.1| - 9.1e-27 94.3 0.0 2.2e-26 93.0 0.0 1.8 1 1 0 1 1 1 1 Family 4 glycosyl hydrolase C-terminal domain Ldh_1_N PF00056.18 gi|529077169|ref|YP_008376172.1| - 0.019 14.7 0.1 0.93 9.3 0.0 2.9 3 0 0 3 3 3 0 lactate/malate dehydrogenase, NAD binding domain OCD_Mu_crystall PF02423.10 gi|529077169|ref|YP_008376172.1| - 0.066 11.9 0.0 0.1 11.3 0.0 1.2 1 0 0 1 1 1 0 Ornithine cyclodeaminase/mu-crystallin family Rrf2 PF02082.15 gi|529077170|ref|YP_008376173.1| - 3.4e-07 30.2 0.0 7.3e-07 29.2 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator LexA_DNA_bind PF01726.11 gi|529077170|ref|YP_008376173.1| - 0.00084 18.8 0.0 0.0016 17.9 0.0 1.4 1 0 0 1 1 1 1 LexA DNA binding domain HTH_20 PF12840.2 gi|529077170|ref|YP_008376173.1| - 0.001 18.8 0.1 0.0026 17.5 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|529077170|ref|YP_008376173.1| - 0.011 15.3 0.0 0.024 14.3 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB SgrR_N PF12793.2 gi|529077170|ref|YP_008376173.1| - 0.056 13.4 0.0 0.096 12.6 0.0 1.5 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term MarR_2 PF12802.2 gi|529077170|ref|YP_008376173.1| - 0.11 12.1 0.0 0.28 10.8 0.0 1.7 1 0 0 1 1 1 0 MarR family Ets PF00178.17 gi|529077171|ref|YP_008376174.1| - 0.043 13.9 0.0 0.069 13.3 0.0 1.2 1 0 0 1 1 1 0 Ets-domain Glyco_hydro_3 PF00933.16 gi|529077172|ref|YP_008376175.1| - 1.6e-79 266.9 0.0 2.1e-79 266.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.17 gi|529077172|ref|YP_008376175.1| - 3e-59 200.2 0.0 5.9e-59 199.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.1 gi|529077172|ref|YP_008376175.1| - 6.9e-20 70.7 0.0 1.6e-19 69.5 0.0 1.7 1 0 0 1 1 1 1 Fibronectin type III-like domain CARDB PF07705.6 gi|529077172|ref|YP_008376175.1| - 0.091 12.8 0.0 0.23 11.5 0.0 1.7 1 0 0 1 1 1 0 CARDB adh_short PF00106.20 gi|529077173|ref|YP_008376176.1| - 7.8e-31 107.2 0.9 9.6e-31 106.9 0.6 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|529077173|ref|YP_008376176.1| - 3.6e-25 89.1 0.1 4.4e-25 88.8 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|529077173|ref|YP_008376176.1| - 1.2e-11 44.5 0.6 1.8e-11 44.0 0.4 1.2 1 0 0 1 1 1 1 KR domain Eno-Rase_NADH_b PF12242.3 gi|529077173|ref|YP_008376176.1| - 0.0025 17.5 0.1 0.0051 16.5 0.1 1.5 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase 3Beta_HSD PF01073.14 gi|529077173|ref|YP_008376176.1| - 0.02 13.5 0.2 0.038 12.6 0.1 1.5 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|529077173|ref|YP_008376176.1| - 0.033 14.1 3.5 0.075 13.0 2.4 1.6 1 1 0 1 1 1 0 NADH(P)-binding Epimerase PF01370.16 gi|529077173|ref|YP_008376176.1| - 0.038 13.4 0.1 0.088 12.2 0.1 1.7 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family THF_DHG_CYH_C PF02882.14 gi|529077173|ref|YP_008376176.1| - 0.042 12.9 4.0 0.039 13.0 0.9 2.2 2 1 1 3 3 3 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DFP PF04127.10 gi|529077173|ref|YP_008376176.1| - 0.092 12.3 2.9 0.19 11.3 2.0 1.6 1 1 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein UxuA PF03786.8 gi|529077174|ref|YP_008376177.1| - 3.5e-84 282.3 0.1 1.1e-62 211.5 0.0 2.0 1 1 1 2 2 2 2 D-mannonate dehydratase (UxuA) AP_endonuc_2 PF01261.19 gi|529077174|ref|YP_008376177.1| - 1.3e-18 67.0 0.0 1.7e-18 66.7 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Mst1_SARAH PF11629.3 gi|529077176|ref|YP_008376179.1| - 0.097 12.5 0.7 7.6 6.4 0.0 2.3 2 0 0 2 2 2 0 C terminal SARAH domain of Mst1 DUF1192 PF06698.6 gi|529077176|ref|YP_008376179.1| - 1.9 8.3 5.4 7.2 6.5 0.2 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF1192) UxaC PF02614.9 gi|529077177|ref|YP_008376180.1| - 2.9e-128 428.3 0.0 3.3e-128 428.2 0.0 1.0 1 0 0 1 1 1 1 Glucuronate isomerase UPF0236 PF06782.6 gi|529077178|ref|YP_008376181.1| - 4.1e-07 28.7 0.1 3.2e-05 22.5 0.0 2.2 2 0 0 2 2 2 2 Uncharacterised protein family (UPF0236) Transposase_mut PF00872.13 gi|529077178|ref|YP_008376181.1| - 9.9e-05 21.0 1.5 0.024 13.2 0.1 2.5 2 1 0 2 2 2 2 Transposase, Mutator family Glyco_hydro_67M PF07488.7 gi|529077180|ref|YP_008376183.1| - 1.8e-126 421.4 0.0 2.4e-126 421.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 67 middle domain Glyco_hydro_67C PF07477.7 gi|529077180|ref|YP_008376183.1| - 4.9e-80 268.1 0.5 7.4e-80 267.5 0.3 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 67 C-terminus Glyco_hydro_67N PF03648.9 gi|529077180|ref|YP_008376183.1| - 1.1e-24 86.7 0.0 1.6e-24 86.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 67 N-terminus Mut7-C PF01927.11 gi|529077181|ref|YP_008376184.1| - 2e-45 154.3 0.0 2.3e-45 154.1 0.0 1.0 1 0 0 1 1 1 1 Mut7-C RNAse domain zf-trcl PF13451.1 gi|529077181|ref|YP_008376184.1| - 0.033 13.8 0.7 7.7 6.2 0.0 2.3 2 0 0 2 2 2 0 Probable zinc-binding domain DNA_RNApol_7kD PF03604.8 gi|529077181|ref|YP_008376184.1| - 0.041 13.3 0.6 2.5 7.6 0.1 2.5 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-Sec23_Sec24 PF04810.10 gi|529077181|ref|YP_008376184.1| - 0.41 10.2 1.9 3 7.4 0.2 2.2 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger Penicillinase_R PF03965.11 gi|529077182|ref|YP_008376185.1| - 0.055 13.5 0.0 0.096 12.7 0.0 1.5 1 0 0 1 1 1 0 Penicillinase repressor DUF387 PF04079.11 gi|529077182|ref|YP_008376185.1| - 0.11 11.8 0.0 0.34 10.2 0.0 1.8 1 1 1 2 2 2 0 Putative transcriptional regulators (Ypuh-like) F-box PF00646.28 gi|529077183|ref|YP_008376186.1| - 0.15 11.7 0.1 0.26 11.0 0.0 1.4 1 0 0 1 1 1 0 F-box domain DUF4234 PF14018.1 gi|529077184|ref|YP_008376187.1| - 1 9.1 7.4 0.17 11.6 0.5 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4234) DUF4131 PF13567.1 gi|529077184|ref|YP_008376187.1| - 4.5 6.6 11.5 0.043 13.2 1.0 2.5 1 1 2 3 3 3 0 Domain of unknown function (DUF4131) LHC PF00556.15 gi|529077185|ref|YP_008376188.1| - 2.8 7.8 4.8 12 5.8 3.3 1.8 1 1 0 1 1 1 0 Antenna complex alpha/beta subunit Polysacc_synt_C PF14667.1 gi|529077186|ref|YP_008376189.1| - 0.021 14.6 0.8 0.024 14.4 0.5 1.0 1 0 0 1 1 1 0 Polysaccharide biosynthesis C-terminal domain DUF4010 PF13194.1 gi|529077187|ref|YP_008376190.1| - 0.016 14.5 0.0 0.017 14.3 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4010) DUF4131 PF13567.1 gi|529077187|ref|YP_008376190.1| - 0.043 13.2 0.0 0.049 13.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) HAMP PF00672.20 gi|529077187|ref|YP_008376190.1| - 3.2 8.0 6.9 0.15 12.2 0.6 1.9 2 1 0 2 2 2 0 HAMP domain NUDIX PF00293.23 gi|529077188|ref|YP_008376191.1| - 6e-17 61.5 0.2 9e-17 60.9 0.1 1.2 1 0 0 1 1 1 1 NUDIX domain Ribosomal_S10 PF00338.17 gi|529077189|ref|YP_008376192.1| - 1.1e-13 50.8 0.0 1.2e-13 50.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e Peptidase_M20 PF01546.23 gi|529077190|ref|YP_008376193.1| - 2.8e-20 72.6 16.0 7.5e-20 71.2 11.1 1.7 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|529077190|ref|YP_008376193.1| - 5.9e-12 45.3 0.5 1.2e-11 44.3 0.3 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain DAO PF01266.19 gi|529077191|ref|YP_008376194.1| - 1.3e-14 53.8 5.7 7.4e-07 28.3 0.1 2.6 3 1 0 3 3 3 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|529077191|ref|YP_008376194.1| - 5.8e-12 45.3 2.7 3.1e-05 23.1 0.1 2.4 2 1 0 2 2 2 2 FAD binding domain FAD_binding_2 PF00890.19 gi|529077191|ref|YP_008376194.1| - 1.3e-11 44.0 9.8 1.7e-07 30.4 1.4 2.5 3 0 0 3 3 3 2 FAD binding domain FAD_oxidored PF12831.2 gi|529077191|ref|YP_008376194.1| - 1.4e-11 44.2 4.3 8.5e-11 41.5 2.9 2.1 1 1 0 1 1 1 1 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|529077191|ref|YP_008376194.1| - 1.1e-10 40.7 1.5 1.9e-07 30.0 0.0 2.3 2 0 0 2 2 2 2 Tryptophan halogenase Thi4 PF01946.12 gi|529077191|ref|YP_008376194.1| - 1.4e-07 30.8 2.7 9.6e-07 28.1 0.6 2.2 2 0 0 2 2 2 1 Thi4 family GIDA PF01134.17 gi|529077191|ref|YP_008376194.1| - 2.3e-07 30.0 0.3 3.4e-07 29.4 0.2 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|529077191|ref|YP_008376194.1| - 1e-06 29.0 5.8 0.0002 21.7 0.9 2.9 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|529077191|ref|YP_008376194.1| - 2.6e-06 27.3 6.0 4.1e-06 26.7 0.2 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|529077191|ref|YP_008376194.1| - 3.1e-06 27.2 0.1 3.1e-06 27.2 0.1 1.8 2 1 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|529077191|ref|YP_008376194.1| - 3.3e-06 25.8 0.7 0.00011 20.7 0.4 2.2 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|529077191|ref|YP_008376194.1| - 4.2e-05 23.6 0.0 8.9e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|529077191|ref|YP_008376194.1| - 0.00031 19.7 2.9 0.013 14.4 0.3 2.7 3 0 0 3 3 3 1 Lycopene cyclase protein 3HCDH_N PF02737.13 gi|529077191|ref|YP_008376194.1| - 0.0012 18.5 0.1 0.0021 17.7 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|529077191|ref|YP_008376194.1| - 0.0066 15.8 0.0 0.012 15.0 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA AlaDh_PNT_C PF01262.16 gi|529077191|ref|YP_008376194.1| - 0.039 13.5 0.5 0.083 12.4 0.4 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Shikimate_DH PF01488.15 gi|529077191|ref|YP_008376194.1| - 0.056 13.5 0.1 0.38 10.8 0.1 2.3 2 1 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase GDI PF00996.13 gi|529077191|ref|YP_008376194.1| - 0.072 11.3 0.0 0.11 10.7 0.0 1.2 1 0 0 1 1 1 0 GDP dissociation inhibitor CPSase_L_chain PF00289.17 gi|529077191|ref|YP_008376194.1| - 0.12 12.4 0.0 0.27 11.3 0.0 1.5 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain Fer2 PF00111.22 gi|529077192|ref|YP_008376195.1| - 1.2e-12 47.3 1.6 1.8e-12 46.8 1.1 1.3 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|529077192|ref|YP_008376195.1| - 0.0028 17.4 0.1 0.0032 17.2 0.0 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain DHODB_Fe-S_bind PF10418.4 gi|529077192|ref|YP_008376195.1| - 0.089 12.2 0.6 0.15 11.5 0.2 1.6 2 0 0 2 2 2 0 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Pyr_redox_2 PF07992.9 gi|529077193|ref|YP_008376196.1| - 2.2e-20 73.3 0.0 7.3e-20 71.7 0.0 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|529077193|ref|YP_008376196.1| - 9.9e-11 41.8 0.3 1.5e-09 38.1 0.0 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|529077193|ref|YP_008376196.1| - 9.8e-09 35.2 0.0 1.7e-08 34.4 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Semialdhyde_dh PF01118.19 gi|529077193|ref|YP_008376196.1| - 0.0015 18.8 0.2 1.1 9.5 0.0 3.6 3 1 0 3 3 3 1 Semialdehyde dehydrogenase, NAD binding domain GIDA PF01134.17 gi|529077193|ref|YP_008376196.1| - 0.01 14.7 0.0 0.72 8.6 0.1 2.3 2 1 0 2 2 2 1 Glucose inhibited division protein A NAD_binding_9 PF13454.1 gi|529077193|ref|YP_008376196.1| - 0.018 14.7 1.1 3.2 7.5 0.1 3.2 3 0 0 3 3 3 0 FAD-NAD(P)-binding Saccharop_dh PF03435.13 gi|529077193|ref|YP_008376196.1| - 0.068 12.1 0.0 3.4 6.5 0.0 2.2 2 0 0 2 2 2 0 Saccharopine dehydrogenase PAPS_reduct PF01507.14 gi|529077195|ref|YP_008376198.1| - 1.3e-19 70.7 0.0 1.3e-15 57.6 0.0 3.1 2 1 0 2 2 2 2 Phosphoadenosine phosphosulfate reductase family ATP_bind_4 PF01902.12 gi|529077195|ref|YP_008376198.1| - 0.0022 17.3 0.0 0.011 15.1 0.0 1.9 2 0 0 2 2 2 1 ATP-binding region HTH_34 PF13601.1 gi|529077196|ref|YP_008376199.1| - 1.4e-25 89.1 0.0 1.6e-25 88.9 0.0 1.0 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|529077196|ref|YP_008376199.1| - 7.9e-13 48.0 0.0 1.4e-12 47.1 0.0 1.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|529077196|ref|YP_008376199.1| - 3.2e-07 29.8 0.0 4.7e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|529077196|ref|YP_008376199.1| - 4.6e-05 23.0 0.0 5.5e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|529077196|ref|YP_008376199.1| - 7.4e-05 22.0 0.0 0.00011 21.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding PadR PF03551.9 gi|529077196|ref|YP_008376199.1| - 0.00029 20.5 0.0 0.00038 20.1 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|529077196|ref|YP_008376199.1| - 0.0019 18.0 0.0 0.0026 17.5 0.0 1.3 1 1 0 1 1 1 1 Winged helix-turn-helix HxlR PF01638.12 gi|529077196|ref|YP_008376199.1| - 0.0053 16.3 0.0 0.0059 16.2 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix TrmB PF01978.14 gi|529077196|ref|YP_008376199.1| - 0.012 15.3 0.0 0.016 14.9 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|529077196|ref|YP_008376199.1| - 0.034 14.4 0.0 0.049 13.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF2513 PF10711.4 gi|529077196|ref|YP_008376199.1| - 0.043 13.8 0.0 0.052 13.6 0.0 1.2 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) Replic_Relax PF13814.1 gi|529077196|ref|YP_008376199.1| - 0.094 12.5 0.0 0.11 12.3 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation MarR PF01047.17 gi|529077196|ref|YP_008376199.1| - 0.11 12.1 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 MarR family Mga PF05043.8 gi|529077196|ref|YP_008376199.1| - 0.12 12.6 0.0 0.26 11.5 0.0 1.5 2 0 0 2 2 2 0 Mga helix-turn-helix domain ABC2_membrane_2 PF12679.2 gi|529077198|ref|YP_008376201.1| - 6.6e-31 107.1 13.4 1.6e-30 105.9 9.3 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|529077198|ref|YP_008376201.1| - 1.2e-16 60.6 13.3 2e-16 59.9 9.2 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|529077198|ref|YP_008376201.1| - 1.6e-07 30.7 17.9 2e-07 30.3 12.4 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|529077198|ref|YP_008376201.1| - 1.3e-05 24.5 9.7 2.3e-05 23.7 6.7 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|529077198|ref|YP_008376201.1| - 0.0058 15.8 9.6 0.011 14.8 6.6 1.5 1 0 0 1 1 1 1 ABC-2 type transporter ABC_tran PF00005.22 gi|529077199|ref|YP_008376202.1| - 1.3e-29 103.2 0.0 2.1e-29 102.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|529077199|ref|YP_008376202.1| - 7.3e-14 52.4 0.1 1.3e-08 35.1 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|529077199|ref|YP_008376202.1| - 0.011 15.1 0.2 0.022 14.2 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.14 gi|529077199|ref|YP_008376202.1| - 0.025 13.8 0.4 8 5.6 0.0 2.8 3 0 0 3 3 3 0 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|529077199|ref|YP_008376202.1| - 0.041 13.0 0.0 0.067 12.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|529077199|ref|YP_008376202.1| - 0.046 14.0 0.2 0.076 13.3 0.1 1.2 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|529077199|ref|YP_008376202.1| - 0.12 11.7 0.0 0.48 9.8 0.0 1.8 2 0 0 2 2 2 0 AAA-like domain SbcCD_C PF13558.1 gi|529077199|ref|YP_008376202.1| - 0.12 12.2 0.1 0.73 9.7 0.0 2.4 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit DUF4162 PF13732.1 gi|529077199|ref|YP_008376202.1| - 0.16 12.5 0.0 0.24 11.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) Spt5-NGN PF03439.8 gi|529077200|ref|YP_008376203.1| - 2.9e-25 87.8 0.1 4.6e-25 87.1 0.1 1.3 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|529077200|ref|YP_008376203.1| - 1.6e-07 30.7 0.6 4.6e-07 29.3 0.1 2.0 2 0 0 2 2 2 1 KOW motif NusG PF02357.14 gi|529077200|ref|YP_008376203.1| - 0.0037 17.4 0.0 0.051 13.8 0.0 2.3 1 1 0 1 1 1 1 Transcription termination factor nusG DbpA PF03880.10 gi|529077200|ref|YP_008376203.1| - 0.15 11.7 0.3 0.93 9.2 0.1 2.1 2 0 0 2 2 2 0 DbpA RNA binding domain SecE PF00584.15 gi|529077201|ref|YP_008376204.1| - 0.036 13.6 0.2 0.036 13.6 0.2 1.1 1 0 0 1 1 1 0 SecE/Sec61-gamma subunits of protein translocation complex Tubulin PF00091.20 gi|529077202|ref|YP_008376205.1| - 1.4e-34 119.8 0.5 3.4e-34 118.5 0.3 1.6 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.3 gi|529077202|ref|YP_008376205.1| - 1.7e-33 114.5 1.9 6e-33 112.7 0.3 2.5 2 0 0 2 2 2 1 FtsZ family, C-terminal domain Eno-Rase_NADH_b PF12242.3 gi|529077202|ref|YP_008376205.1| - 0.054 13.2 1.4 0.18 11.6 0.9 1.8 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase PRK PF00485.13 gi|529077202|ref|YP_008376205.1| - 0.081 12.4 0.2 0.14 11.7 0.1 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Cpn10 PF00166.16 gi|529077202|ref|YP_008376205.1| - 0.083 12.8 2.5 4.7 7.2 0.4 2.7 2 0 0 2 2 2 0 Chaperonin 10 Kd subunit NmrA PF05368.8 gi|529077202|ref|YP_008376205.1| - 0.1 11.8 3.0 0.16 11.2 2.1 1.3 1 0 0 1 1 1 0 NmrA-like family CD99L2 PF12301.3 gi|529077202|ref|YP_008376205.1| - 0.15 11.7 1.7 0.26 10.9 1.2 1.5 1 0 0 1 1 1 0 CD99 antigen like protein 2 ThiF PF00899.16 gi|529077202|ref|YP_008376205.1| - 0.29 10.9 2.3 0.63 9.8 1.4 1.8 1 1 0 1 1 1 0 ThiF family Tubulin_2 PF13809.1 gi|529077202|ref|YP_008376205.1| - 0.56 9.1 3.9 1.6 7.6 2.7 1.8 1 1 0 1 1 1 0 Tubulin like FAD_binding_6 PF00970.19 gi|529077203|ref|YP_008376206.1| - 6.8e-11 42.1 0.0 9.8e-11 41.6 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain POR_N PF01855.14 gi|529077204|ref|YP_008376207.1| - 1.7e-59 201.0 0.5 3e-59 200.3 0.3 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|529077204|ref|YP_008376207.1| - 1.6e-39 135.5 0.8 3.8e-39 134.3 0.5 1.6 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.13 gi|529077204|ref|YP_008376207.1| - 1.8e-06 27.5 1.6 2.9e-06 26.8 0.3 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|529077205|ref|YP_008376208.1| - 7.8e-33 113.2 0.4 1.2e-32 112.6 0.3 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|529077205|ref|YP_008376208.1| - 2e-14 53.2 0.0 4.4e-14 52.1 0.0 1.6 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal DUF1469 PF07332.6 gi|529077206|ref|YP_008376209.1| - 0.7 9.6 5.4 0.93 9.2 3.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) Cep57_MT_bd PF06657.8 gi|529077207|ref|YP_008376210.1| - 0.12 12.3 0.5 5.6 6.9 0.0 2.1 2 0 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 NifU PF01106.12 gi|529077208|ref|YP_008376211.1| - 2.7e-10 39.8 0.0 3.3e-10 39.5 0.0 1.1 1 0 0 1 1 1 1 NifU-like domain FIST PF08495.5 gi|529077208|ref|YP_008376211.1| - 0.1 11.7 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 FIST N domain ApbA_C PF08546.6 gi|529077209|ref|YP_008376212.1| - 5.5e-32 110.3 0.1 1.1e-31 109.4 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.11 gi|529077209|ref|YP_008376212.1| - 4.6e-29 100.8 0.0 7.1e-29 100.2 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|529077209|ref|YP_008376212.1| - 0.034 13.8 0.0 0.059 13.1 0.0 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CoA_binding_2 PF13380.1 gi|529077209|ref|YP_008376212.1| - 0.099 12.8 0.7 0.33 11.1 0.0 2.2 3 1 0 3 3 3 0 CoA binding domain DUF111 PF01969.12 gi|529077210|ref|YP_008376213.1| - 3e-131 437.7 5.5 3.4e-131 437.5 3.8 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF111 DUF460 PF04312.8 gi|529077211|ref|YP_008376214.1| - 0.015 14.8 1.0 0.029 13.9 0.5 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF460) DUF3093 PF11292.3 gi|529077211|ref|YP_008376214.1| - 0.084 12.6 0.2 0.13 12.0 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3093) FG-GAP_2 PF14312.1 gi|529077212|ref|YP_008376215.1| - 4.1e-113 369.2 60.7 3.7e-18 65.2 2.2 7.2 7 0 0 7 7 7 7 FG-GAP repeat ydhR PF08803.6 gi|529077212|ref|YP_008376215.1| - 4.5e-06 26.6 1.0 9.7 6.3 0.0 6.5 6 1 1 7 7 7 1 Putative mono-oxygenase ydhR Kelch_3 PF13415.1 gi|529077212|ref|YP_008376215.1| - 6.9e-06 26.0 23.3 0.16 12.1 0.1 6.7 7 0 0 7 7 7 2 Galactose oxidase, central domain Kelch_4 PF13418.1 gi|529077212|ref|YP_008376215.1| - 0.00096 18.8 3.2 1.5 8.6 0.3 4.9 4 0 0 4 4 4 1 Galactose oxidase, central domain SnoaL_3 PF13474.1 gi|529077212|ref|YP_008376215.1| - 0.0052 16.8 1.0 6.6 6.7 0.0 4.2 3 2 2 5 5 5 1 SnoaL-like domain X_fast-SP_rel PF06669.6 gi|529077212|ref|YP_008376215.1| - 0.05 13.5 9.4 18 5.3 0.1 5.5 6 0 0 6 6 6 0 Xylella fastidiosa surface protein related Kelch_1 PF01344.20 gi|529077212|ref|YP_008376215.1| - 0.094 12.2 1.5 13 5.4 0.0 4.5 6 0 0 6 6 6 0 Kelch motif DUF4101 PF13355.1 gi|529077212|ref|YP_008376215.1| - 0.11 12.8 0.0 52 4.2 0.0 4.3 5 1 1 6 6 6 0 Protein of unknown function (DUF4101) Qn_am_d_aII PF14930.1 gi|529077212|ref|YP_008376215.1| - 0.12 12.3 2.3 9.3 6.2 0.0 4.0 3 1 2 5 5 5 0 Quinohemoprotein amine dehydrogenase, alpha subunit domain II Rad51 PF08423.6 gi|529077213|ref|YP_008376216.1| - 2.2e-29 102.1 0.1 2.8e-29 101.7 0.1 1.0 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.1 gi|529077213|ref|YP_008376216.1| - 3.8e-16 59.0 0.4 5.6e-16 58.5 0.3 1.2 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|529077213|ref|YP_008376216.1| - 8.1e-11 41.5 0.1 9.9e-11 41.2 0.1 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein KaiC PF06745.8 gi|529077213|ref|YP_008376216.1| - 1.9e-09 36.9 0.0 3.9e-09 35.9 0.0 1.5 1 1 0 1 1 1 1 KaiC Zot PF05707.7 gi|529077213|ref|YP_008376216.1| - 2e-06 27.4 0.0 2.2e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) AAA_24 PF13479.1 gi|529077213|ref|YP_008376216.1| - 0.00025 20.6 0.3 0.00041 20.0 0.2 1.5 1 1 0 1 1 1 1 AAA domain DnaB_C PF03796.10 gi|529077213|ref|YP_008376216.1| - 0.0028 16.6 0.4 0.036 12.9 0.0 2.0 1 1 1 2 2 2 1 DnaB-like helicase C terminal domain AAA_19 PF13245.1 gi|529077213|ref|YP_008376216.1| - 0.023 14.4 0.2 0.023 14.4 0.2 1.8 2 0 0 2 2 2 0 Part of AAA domain IstB_IS21 PF01695.12 gi|529077213|ref|YP_008376216.1| - 0.037 13.4 0.4 0.35 10.2 0.0 2.1 1 1 1 2 2 2 0 IstB-like ATP binding protein Zeta_toxin PF06414.7 gi|529077213|ref|YP_008376216.1| - 0.078 12.0 0.3 0.17 10.9 0.2 1.7 1 1 0 1 1 1 0 Zeta toxin Arch_ATPase PF01637.13 gi|529077213|ref|YP_008376216.1| - 0.09 12.4 0.0 0.11 12.1 0.0 1.1 1 0 0 1 1 1 0 Archaeal ATPase PhoU PF01895.14 gi|529077214|ref|YP_008376217.1| - 1e-35 122.0 11.8 1e-19 70.7 0.6 2.2 2 0 0 2 2 2 2 PhoU domain ATP-synt_D PF01813.12 gi|529077214|ref|YP_008376217.1| - 0.047 13.2 1.2 0.097 12.2 0.1 1.9 1 1 0 1 1 1 0 ATP synthase subunit D ABC_tran PF00005.22 gi|529077215|ref|YP_008376218.1| - 1.5e-30 106.2 0.0 2.6e-30 105.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|529077215|ref|YP_008376218.1| - 7.9e-16 58.8 0.1 1e-08 35.5 0.0 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|529077215|ref|YP_008376218.1| - 3e-09 36.4 0.8 5e-08 32.4 0.6 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|529077215|ref|YP_008376218.1| - 1.9e-05 24.7 0.0 5.2e-05 23.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|529077215|ref|YP_008376218.1| - 2.2e-05 23.7 0.1 0.018 14.1 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|529077215|ref|YP_008376218.1| - 0.00016 22.0 0.3 0.0013 19.1 0.1 2.3 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|529077215|ref|YP_008376218.1| - 0.00026 20.2 0.0 0.00052 19.2 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|529077215|ref|YP_008376218.1| - 0.00032 20.1 0.0 0.0008 18.8 0.0 1.7 2 0 0 2 2 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|529077215|ref|YP_008376218.1| - 0.00034 20.6 1.8 0.0018 18.2 1.2 2.0 1 1 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.10 gi|529077215|ref|YP_008376218.1| - 0.0028 16.4 0.0 0.0041 15.8 0.0 1.2 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein DeoRC PF00455.17 gi|529077215|ref|YP_008376218.1| - 0.0033 17.0 0.0 0.0081 15.8 0.0 1.6 2 0 0 2 2 1 1 DeoR C terminal sensor domain AAA_17 PF13207.1 gi|529077215|ref|YP_008376218.1| - 0.0038 18.0 0.3 0.021 15.6 0.2 2.3 1 1 1 2 2 1 1 AAA domain AAA_19 PF13245.1 gi|529077215|ref|YP_008376218.1| - 0.0058 16.3 0.0 0.97 9.2 0.0 2.6 2 0 0 2 2 2 1 Part of AAA domain Arch_ATPase PF01637.13 gi|529077215|ref|YP_008376218.1| - 0.0067 16.1 0.2 0.23 11.1 0.0 2.2 2 1 0 2 2 2 1 Archaeal ATPase AAA_33 PF13671.1 gi|529077215|ref|YP_008376218.1| - 0.011 15.6 0.0 0.024 14.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|529077215|ref|YP_008376218.1| - 0.013 14.9 0.1 0.043 13.2 0.0 1.8 2 1 0 2 2 2 0 AAA-like domain AAA_25 PF13481.1 gi|529077215|ref|YP_008376218.1| - 0.016 14.5 0.2 0.13 11.6 0.0 2.2 2 1 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|529077215|ref|YP_008376218.1| - 0.026 14.1 0.0 0.053 13.1 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_14 PF13173.1 gi|529077215|ref|YP_008376218.1| - 0.048 13.5 0.1 0.14 12.0 0.0 1.9 1 1 1 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|529077215|ref|YP_008376218.1| - 0.05 13.1 0.0 0.54 9.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|529077215|ref|YP_008376218.1| - 0.09 12.9 0.0 0.96 9.6 0.0 2.3 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|529077215|ref|YP_008376218.1| - 0.09 13.0 0.0 0.26 11.6 0.0 1.9 2 1 0 2 2 1 0 AAA domain PPV_E1_C PF00519.12 gi|529077215|ref|YP_008376218.1| - 0.094 11.3 0.0 0.14 10.6 0.0 1.2 1 0 0 1 1 1 0 Papillomavirus helicase MobB PF03205.9 gi|529077215|ref|YP_008376218.1| - 0.11 12.2 0.0 1.1 8.9 0.0 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B RNA_helicase PF00910.17 gi|529077215|ref|YP_008376218.1| - 0.11 12.6 0.0 0.3 11.2 0.0 1.8 2 0 0 2 2 1 0 RNA helicase Adeno_IVa2 PF02456.10 gi|529077215|ref|YP_008376218.1| - 0.12 11.0 0.0 0.88 8.1 0.0 2.0 2 0 0 2 2 2 0 Adenovirus IVa2 protein G-alpha PF00503.15 gi|529077215|ref|YP_008376218.1| - 0.12 11.0 0.0 0.19 10.3 0.0 1.3 1 0 0 1 1 1 0 G-protein alpha subunit BPD_transp_1 PF00528.17 gi|529077216|ref|YP_008376219.1| - 6.8e-19 68.1 11.7 6.8e-19 68.1 8.1 4.7 1 1 2 3 3 3 1 Binding-protein-dependent transport system inner membrane component HTH_23 PF13384.1 gi|529077216|ref|YP_008376219.1| - 0.011 15.3 0.0 0.032 13.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain Peptidase_A8 PF01252.13 gi|529077216|ref|YP_008376219.1| - 0.35 10.4 5.7 3.8 7.1 0.0 3.6 3 1 0 3 3 3 0 Signal peptidase (SPase) II BPD_transp_1 PF00528.17 gi|529077217|ref|YP_008376220.1| - 4.4e-16 58.9 16.1 4.4e-16 58.9 11.2 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component PBP_like_2 PF12849.2 gi|529077218|ref|YP_008376221.1| - 2.8e-25 89.3 1.1 6.8e-25 88.0 0.7 1.5 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|529077218|ref|YP_008376221.1| - 3.9e-12 45.5 0.0 6.4e-12 44.8 0.0 1.4 1 0 0 1 1 1 1 PBP superfamily domain TAT_signal PF10518.4 gi|529077218|ref|YP_008376221.1| - 0.0005 19.8 0.4 0.0012 18.6 0.3 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|529077218|ref|YP_008376221.1| - 0.0074 15.4 2.3 0.014 14.5 1.6 1.5 1 0 0 1 1 1 1 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal PhoU PF01895.14 gi|529077219|ref|YP_008376222.1| - 2.6e-22 79.0 4.6 5.2e-15 55.6 0.5 2.3 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|529077219|ref|YP_008376222.1| - 5.6e-09 35.5 0.0 1.2e-08 34.4 0.0 1.6 1 0 0 1 1 1 1 Antidote-toxin recognition MazE MCPsignal PF00015.16 gi|529077219|ref|YP_008376222.1| - 0.014 14.9 0.2 0.03 13.8 0.1 1.6 1 1 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain TGFb_propeptide PF00688.13 gi|529077219|ref|YP_008376222.1| - 0.071 12.3 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 TGF-beta propeptide Ribosomal_S8e PF01201.17 gi|529077220|ref|YP_008376223.1| - 2.5e-34 118.2 2.3 2.9e-34 118.0 1.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e Fer4_15 PF13459.1 gi|529077221|ref|YP_008376224.1| - 1.4e-16 60.7 5.8 1.6e-16 60.6 4.0 1.0 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|529077221|ref|YP_008376224.1| - 7.8e-15 55.0 3.2 8.9e-15 54.8 2.2 1.0 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_19 PF06902.6 gi|529077221|ref|YP_008376224.1| - 1.5e-06 27.8 0.1 1.7e-06 27.7 0.0 1.1 1 0 0 1 1 1 1 Divergent 4Fe-4S mono-cluster Fer4 PF00037.22 gi|529077221|ref|YP_008376224.1| - 0.00026 20.4 4.5 0.12 12.0 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|529077221|ref|YP_008376224.1| - 0.1 12.4 0.2 2.1 8.2 0.0 2.1 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|529077221|ref|YP_008376224.1| - 0.11 12.4 3.0 2.8 7.9 0.2 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Etmic-2 PF06670.6 gi|529077221|ref|YP_008376224.1| - 0.11 11.2 0.3 0.12 11.0 0.2 1.0 1 0 0 1 1 1 0 Microneme protein Etmic-2 DUF2240 PF09999.4 gi|529077222|ref|YP_008376225.1| - 8.7e-46 154.9 0.0 9.8e-46 154.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) DUF3659 PF12396.3 gi|529077223|ref|YP_008376226.1| - 0.026 14.1 0.1 0.052 13.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3659) PhoPQ_related PF10142.4 gi|529077223|ref|YP_008376226.1| - 0.12 10.8 0.0 0.12 10.8 0.0 1.1 1 0 0 1 1 1 0 PhoPQ-activated pathogenicity-related protein HAD_2 PF13419.1 gi|529077224|ref|YP_008376227.1| - 2.2e-28 99.6 0.0 2.8e-28 99.3 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|529077224|ref|YP_008376227.1| - 3.6e-11 43.8 3.9 6.5e-11 43.0 2.7 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|529077224|ref|YP_008376227.1| - 5.6e-11 42.0 0.1 1.3e-10 40.8 0.1 1.7 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.2 gi|529077224|ref|YP_008376227.1| - 0.00021 21.5 0.1 0.00029 21.0 0.1 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase OMPdecase PF00215.19 gi|529077225|ref|YP_008376228.1| - 5.5e-33 114.2 0.0 7.1e-33 113.8 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family zf-HIT PF04438.11 gi|529077226|ref|YP_008376229.1| - 0.00012 21.6 1.8 0.00012 21.6 1.3 1.9 2 0 0 2 2 2 1 HIT zinc finger zf-B_box PF00643.19 gi|529077226|ref|YP_008376229.1| - 0.027 14.3 0.5 0.027 14.3 0.3 2.0 1 1 0 2 2 2 0 B-box zinc finger DUF2054 PF10218.4 gi|529077226|ref|YP_008376229.1| - 0.068 13.0 4.9 0.075 12.8 3.4 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2054) zf-AN1 PF01428.11 gi|529077226|ref|YP_008376229.1| - 0.43 10.4 5.0 0.23 11.3 2.1 1.6 1 1 0 1 1 1 0 AN1-like Zinc finger DZR PF12773.2 gi|529077226|ref|YP_008376229.1| - 0.65 9.8 7.1 26 4.7 5.5 2.1 1 1 0 1 1 1 0 Double zinc ribbon zf-UBP PF02148.14 gi|529077226|ref|YP_008376229.1| - 1.6 8.9 5.8 0.3 11.2 1.4 1.6 1 1 0 1 1 1 0 Zn-finger in ubiquitin-hydrolases and other protein zf-C2H2_6 PF13912.1 gi|529077226|ref|YP_008376229.1| - 4.1 7.4 7.5 1.5 8.8 0.3 2.5 3 0 0 3 3 3 0 C2H2-type zinc finger zf-C3HC4_3 PF13920.1 gi|529077226|ref|YP_008376229.1| - 4.6 6.9 7.6 23 4.7 5.3 1.9 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DUF46 PF01864.12 gi|529077227|ref|YP_008376230.1| - 4.5e-49 166.6 1.2 5.2e-49 166.4 0.8 1.0 1 0 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|529077227|ref|YP_008376230.1| - 1.8e-05 24.5 2.8 3.3e-05 23.6 0.0 2.2 1 1 1 2 2 2 1 Cytidylyltransferase family Pribosyltran PF00156.22 gi|529077227|ref|YP_008376230.1| - 0.12 12.0 0.3 0.19 11.4 0.2 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase domain Gly-zipper_OmpA PF13436.1 gi|529077227|ref|YP_008376230.1| - 0.22 11.1 9.0 1.6 8.4 6.3 2.1 1 1 0 1 1 1 0 Glycine-zipper containing OmpA-like membrane domain TM_helix PF05552.7 gi|529077227|ref|YP_008376230.1| - 0.23 11.1 3.8 0.85 9.3 0.2 2.5 2 0 0 2 2 2 0 Conserved TM helix Gly-zipper_YMGG PF13441.1 gi|529077227|ref|YP_008376230.1| - 0.73 9.3 17.1 1.5 8.4 0.5 2.6 2 1 0 2 2 2 0 YMGG-like Gly-zipper BNR PF02012.15 gi|529077227|ref|YP_008376230.1| - 1.8 8.6 4.4 13 6.1 0.2 3.0 3 0 0 3 3 3 0 BNR/Asp-box repeat BPD_transp_1 PF00528.17 gi|529077227|ref|YP_008376230.1| - 5.5 6.4 10.0 5.1 6.5 2.1 2.6 2 1 0 2 2 2 0 Binding-protein-dependent transport system inner membrane component Porphobil_deam PF01379.15 gi|529077228|ref|YP_008376231.1| - 8e-59 198.1 0.0 3.3e-47 160.1 0.0 2.1 2 0 0 2 2 2 2 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.10 gi|529077228|ref|YP_008376231.1| - 3.9e-12 46.1 0.3 1.2e-11 44.5 0.2 1.9 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain SBP_bac_11 PF13531.1 gi|529077228|ref|YP_008376231.1| - 0.11 12.1 0.1 4.2 6.9 0.0 2.1 1 1 0 2 2 2 0 Bacterial extracellular solute-binding protein HEM4 PF02602.10 gi|529077229|ref|YP_008376232.1| - 3.1e-44 150.9 1.4 3.9e-44 150.6 1.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD DDE_Tnp_1 PF01609.16 gi|529077230|ref|YP_008376233.1| - 7.8e-15 54.9 0.0 1.2e-14 54.4 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain DHH PF01368.15 gi|529077232|ref|YP_008376235.1| - 5.3e-15 55.3 0.0 7.9e-15 54.7 0.0 1.3 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|529077232|ref|YP_008376235.1| - 5.1e-13 48.5 0.4 1.2e-12 47.3 0.3 1.7 1 0 0 1 1 1 1 DHHA1 domain PALP PF00291.20 gi|529077233|ref|YP_008376236.1| - 5.6e-59 199.8 1.0 6.3e-59 199.7 0.7 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Cys_Met_Meta_PP PF01053.15 gi|529077234|ref|YP_008376237.1| - 3.4e-155 516.0 0.0 3.9e-155 515.9 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|529077234|ref|YP_008376237.1| - 3.4e-08 32.9 0.0 1e-07 31.3 0.0 1.8 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|529077234|ref|YP_008376237.1| - 6.7e-08 31.6 0.0 1.1e-07 30.8 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Met_gamma_lyase PF06838.6 gi|529077234|ref|YP_008376237.1| - 0.00025 19.4 0.0 0.00036 18.9 0.0 1.2 1 0 0 1 1 1 1 Methionine gamma-lyase SQS_PSY PF00494.14 gi|529077235|ref|YP_008376238.1| - 1.4e-42 145.8 1.1 1.7e-42 145.5 0.8 1.1 1 0 0 1 1 1 1 Squalene/phytoene synthase CheC PF04509.7 gi|529077236|ref|YP_008376239.1| - 1.3e-12 47.2 0.7 9.8e-11 41.2 0.0 2.7 2 0 0 2 2 2 2 CheC-like family CheX PF13690.1 gi|529077236|ref|YP_008376239.1| - 1.6e-07 31.1 0.0 3e-07 30.2 0.0 1.4 1 0 0 1 1 1 1 Chemotaxis phosphatase CheX CopD PF05425.8 gi|529077237|ref|YP_008376240.1| - 1.1e-08 35.2 5.1 1.1e-08 35.2 3.5 1.9 2 0 0 2 2 2 1 Copper resistance protein D DUF95 PF01944.12 gi|529077237|ref|YP_008376240.1| - 0.035 13.7 0.4 0.035 13.7 0.3 1.6 1 1 0 1 1 1 0 Integral membrane protein DUF95 DUF4149 PF13664.1 gi|529077237|ref|YP_008376240.1| - 0.27 11.3 2.8 0.59 10.2 1.9 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4149) Ribosomal_S6e PF01092.14 gi|529077238|ref|YP_008376241.1| - 3.6e-40 136.5 0.4 4.2e-40 136.3 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e CheF-arch PF04283.7 gi|529077239|ref|YP_008376242.1| - 7.3e-55 185.5 0.0 9.8e-55 185.1 0.0 1.1 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea GRAM PF02893.15 gi|529077239|ref|YP_008376242.1| - 0.0027 17.2 0.0 0.039 13.4 0.0 2.3 2 0 0 2 2 2 1 GRAM domain MarR PF01047.17 gi|529077239|ref|YP_008376242.1| - 0.0048 16.5 0.0 0.0086 15.7 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|529077239|ref|YP_008376242.1| - 0.093 12.4 0.0 0.19 11.4 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB CheF-arch PF04283.7 gi|529077240|ref|YP_008376243.1| - 2e-56 190.6 0.7 3.2e-56 190.0 0.5 1.3 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea bPH_4 PF06713.6 gi|529077240|ref|YP_008376243.1| - 0.00073 19.3 0.0 0.0022 17.8 0.0 1.8 2 0 0 2 2 2 1 Bacterial PH domain bPH_5 PF10882.3 gi|529077240|ref|YP_008376243.1| - 0.012 15.3 0.0 3.7 7.4 0.0 2.6 1 1 1 2 2 2 0 Bacterial PH domain PASTA PF03793.14 gi|529077240|ref|YP_008376243.1| - 0.06 12.9 0.0 0.15 11.7 0.0 1.7 1 0 0 1 1 1 0 PASTA domain Rio2_N PF09202.6 gi|529077240|ref|YP_008376243.1| - 0.11 12.5 0.0 9.2 6.4 0.0 2.3 2 0 0 2 2 2 0 Rio2, N-terminal HEAT_2 PF13646.1 gi|529077241|ref|YP_008376244.1| - 6.5e-59 196.2 23.1 1.5e-16 60.4 1.6 5.2 2 1 3 5 5 5 5 HEAT repeats HEAT_PBS PF03130.11 gi|529077241|ref|YP_008376244.1| - 1.2e-23 81.0 23.7 1.2e-05 25.3 0.7 9.2 10 0 0 10 10 10 5 PBS lyase HEAT-like repeat HEAT PF02985.17 gi|529077241|ref|YP_008376244.1| - 1.3e-23 80.8 16.0 0.0068 16.3 0.0 10.4 11 0 0 11 11 11 5 HEAT repeat HEAT_EZ PF13513.1 gi|529077241|ref|YP_008376244.1| - 1.5e-21 76.1 32.5 0.038 14.4 0.0 10.4 9 2 1 10 10 10 8 HEAT-like repeat Arm PF00514.18 gi|529077241|ref|YP_008376244.1| - 6.7e-14 51.1 0.0 0.39 10.6 0.0 9.3 10 0 0 10 10 10 3 Armadillo/beta-catenin-like repeat Adaptin_N PF01602.15 gi|529077241|ref|YP_008376244.1| - 1.9e-07 29.8 0.4 0.013 13.8 0.1 4.3 2 1 2 4 4 4 2 Adaptin N terminal region Cnd1 PF12717.2 gi|529077241|ref|YP_008376244.1| - 0.0011 18.8 2.1 2.6 7.8 0.2 5.2 3 1 2 5 5 5 1 non-SMC mitotic condensation complex subunit 1 DnaG_DnaB_bind PF08278.6 gi|529077241|ref|YP_008376244.1| - 0.0018 18.4 6.1 0.22 11.7 0.5 3.0 2 1 1 3 3 3 2 DNA primase DnaG DnaB-binding Vac14_Fab1_bd PF12755.2 gi|529077241|ref|YP_008376244.1| - 0.013 15.8 0.0 49 4.3 0.0 4.3 4 1 1 5 5 4 0 Vacuolar 14 Fab1-binding region Imm16 PF15565.1 gi|529077241|ref|YP_008376244.1| - 0.016 15.0 6.5 0.44 10.4 0.1 4.0 3 1 1 4 4 4 0 Immunity protein 16 DUF3554 PF12074.3 gi|529077241|ref|YP_008376244.1| - 0.047 13.1 0.0 0.23 10.8 0.0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3554) FdhE PF04216.7 gi|529077241|ref|YP_008376244.1| - 5.2 6.7 8.9 10 5.7 0.1 3.1 2 1 1 3 3 3 0 Protein involved in formate dehydrogenase formation CheR PF01739.13 gi|529077242|ref|YP_008376245.1| - 2.2e-48 164.1 0.0 2.7e-48 163.8 0.0 1.1 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.10 gi|529077242|ref|YP_008376245.1| - 5.1e-05 22.5 1.8 0.00012 21.3 1.2 1.7 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain Methyltransf_12 PF08242.7 gi|529077242|ref|YP_008376245.1| - 0.00028 21.2 0.0 0.0095 16.3 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|529077242|ref|YP_008376245.1| - 0.00054 20.5 0.0 0.0012 19.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|529077242|ref|YP_008376245.1| - 0.12 12.1 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain HATPase_c PF02518.21 gi|529077243|ref|YP_008376246.1| - 1.2e-23 82.9 0.3 4.9e-23 80.9 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Hpt PF01627.18 gi|529077243|ref|YP_008376246.1| - 3.8e-21 74.8 1.3 9.2e-21 73.6 0.2 2.3 2 0 0 2 2 2 1 Hpt domain CheW PF01584.14 gi|529077243|ref|YP_008376246.1| - 1.1e-20 73.4 1.8 1.8e-20 72.8 0.3 2.2 2 0 0 2 2 2 1 CheW-like domain H-kinase_dim PF02895.9 gi|529077243|ref|YP_008376246.1| - 6e-10 39.3 3.9 6e-10 39.3 2.7 2.4 2 0 0 2 2 2 1 Signal transducing histidine kinase, homodimeric domain P2 PF07194.6 gi|529077243|ref|YP_008376246.1| - 9.7e-08 31.7 0.1 3.2e-07 30.1 0.0 1.9 1 0 0 1 1 1 1 P2 response regulator binding domain HATPase_c_2 PF13581.1 gi|529077243|ref|YP_008376246.1| - 0.00053 19.7 0.1 0.0016 18.2 0.1 1.9 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|529077243|ref|YP_008376246.1| - 0.017 14.8 0.0 0.089 12.5 0.0 2.2 1 1 0 1 1 1 0 GHKL domain CheB_methylest PF01339.12 gi|529077244|ref|YP_008376247.1| - 1.2e-61 207.3 0.5 2.4e-61 206.3 0.3 1.5 1 0 0 1 1 1 1 CheB methylesterase Response_reg PF00072.19 gi|529077244|ref|YP_008376247.1| - 8.7e-22 77.2 0.3 2.3e-21 75.8 0.2 1.7 1 0 0 1 1 1 1 Response regulator receiver domain CheW PF01584.14 gi|529077245|ref|YP_008376248.1| - 1.2e-27 96.0 0.7 1.3e-27 95.9 0.5 1.0 1 0 0 1 1 1 1 CheW-like domain KaiC PF06745.8 gi|529077246|ref|YP_008376249.1| - 3.9e-49 166.8 0.0 4.4e-49 166.6 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|529077246|ref|YP_008376249.1| - 5.6e-10 38.9 0.0 1.2e-09 37.8 0.0 1.5 1 1 1 2 2 2 1 AAA domain AAA_24 PF13479.1 gi|529077246|ref|YP_008376249.1| - 4.3e-05 23.2 0.0 8.2e-05 22.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.10 gi|529077246|ref|YP_008376249.1| - 0.0015 17.4 0.0 0.0045 15.9 0.0 1.6 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain DUF2075 PF09848.4 gi|529077246|ref|YP_008376249.1| - 0.0053 15.7 0.0 0.006 15.5 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_14 PF13173.1 gi|529077246|ref|YP_008376249.1| - 0.083 12.7 0.1 0.15 11.9 0.1 1.8 1 1 0 1 1 1 0 AAA domain Rad51 PF08423.6 gi|529077246|ref|YP_008376249.1| - 0.13 11.1 0.4 0.24 10.2 0.1 1.5 2 0 0 2 2 2 0 Rad51 HTH_20 PF12840.2 gi|529077247|ref|YP_008376250.1| - 4.9e-09 35.8 0.1 8.8e-09 35.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|529077247|ref|YP_008376250.1| - 0.0014 17.9 0.0 0.0023 17.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|529077247|ref|YP_008376250.1| - 0.0067 16.1 0.0 0.013 15.1 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|529077247|ref|YP_008376250.1| - 0.0073 15.8 0.0 0.015 14.8 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|529077247|ref|YP_008376250.1| - 0.015 14.8 0.0 0.028 14.0 0.0 1.5 1 0 0 1 1 1 0 HTH domain HTH_27 PF13463.1 gi|529077247|ref|YP_008376250.1| - 0.021 15.1 0.1 0.031 14.6 0.1 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|529077247|ref|YP_008376250.1| - 0.032 13.9 0.1 0.051 13.2 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_AsnC-type PF13404.1 gi|529077247|ref|YP_008376250.1| - 0.056 12.9 0.0 0.14 11.6 0.0 1.8 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain PsbQ PF05757.6 gi|529077248|ref|YP_008376251.1| - 0.14 11.5 1.0 0.17 11.3 0.7 1.1 1 0 0 1 1 1 0 Oxygen evolving enhancer protein 3 (PsbQ) DUF3488 PF11992.3 gi|529077248|ref|YP_008376251.1| - 0.43 9.1 3.5 0.51 8.9 2.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3488) Tetraspannin PF00335.15 gi|529077248|ref|YP_008376251.1| - 0.53 9.5 7.2 0.58 9.3 5.0 1.1 1 0 0 1 1 1 0 Tetraspanin family MerC PF03203.9 gi|529077248|ref|YP_008376251.1| - 1.9 8.8 7.2 3.4 8.0 5.0 1.5 1 1 0 1 1 1 0 MerC mercury resistance protein Arch_flagellin PF01917.11 gi|529077249|ref|YP_008376252.1| - 1.8e-31 109.2 9.9 2.1e-31 109.0 6.9 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin DUF2574 PF10836.3 gi|529077249|ref|YP_008376252.1| - 0.15 11.7 1.2 0.25 11.0 0.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2574) CENP-L PF13092.1 gi|529077250|ref|YP_008376253.1| - 0.13 12.0 0.0 0.24 11.1 0.0 1.3 1 1 0 1 1 1 0 Kinetochore complex Sim4 subunit Fta1 PMT_2 PF13231.1 gi|529077252|ref|YP_008376255.1| - 0.0005 19.9 8.9 0.0005 19.9 6.2 3.4 4 0 0 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Response_reg PF00072.19 gi|529077253|ref|YP_008376256.1| - 9.1e-32 109.3 0.7 1e-31 109.2 0.5 1.0 1 0 0 1 1 1 1 Response regulator receiver domain RE_TdeIII PF09520.5 gi|529077253|ref|YP_008376256.1| - 0.04 13.2 0.1 0.046 13.0 0.0 1.2 1 0 0 1 1 1 0 Type II restriction endonuclease, TdeIII QRPTase_C PF01729.14 gi|529077253|ref|YP_008376256.1| - 0.068 12.6 2.9 0.46 9.9 1.8 1.9 1 1 1 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain IMPDH PF00478.20 gi|529077253|ref|YP_008376256.1| - 0.091 11.6 0.4 0.12 11.2 0.3 1.1 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain CheC PF04509.7 gi|529077254|ref|YP_008376257.1| - 1.4e-22 79.0 0.1 4.2e-10 39.1 0.0 2.8 3 0 0 3 3 3 2 CheC-like family CheX PF13690.1 gi|529077254|ref|YP_008376257.1| - 1.4e-14 53.7 0.1 8.6e-07 28.7 0.0 2.5 2 0 0 2 2 2 2 Chemotaxis phosphatase CheX Cadherin_C PF01049.12 gi|529077254|ref|YP_008376257.1| - 0.023 14.7 0.1 0.11 12.4 0.0 2.1 3 0 0 3 3 3 0 Cadherin cytoplasmic region CheD PF03975.8 gi|529077255|ref|YP_008376258.1| - 7.8e-30 102.9 0.0 9.7e-30 102.6 0.0 1.1 1 0 0 1 1 1 1 CheD chemotactic sensory transduction Arch_fla_DE PF04659.8 gi|529077256|ref|YP_008376259.1| - 5.5e-28 96.7 0.0 1.3e-27 95.5 0.0 1.6 1 0 0 1 1 1 1 Archaeal flagella protein FlaC_arch PF05377.6 gi|529077256|ref|YP_008376259.1| - 7.3e-22 77.0 1.4 1.3e-21 76.2 0.9 1.4 1 0 0 1 1 1 1 Flagella accessory protein C (FlaC) IncA PF04156.9 gi|529077256|ref|YP_008376259.1| - 0.14 11.7 0.1 0.27 10.8 0.1 1.4 1 0 0 1 1 1 0 IncA protein DUF904 PF06005.7 gi|529077256|ref|YP_008376259.1| - 0.22 11.8 1.2 0.43 10.8 0.8 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF904) bZIP_1 PF00170.16 gi|529077256|ref|YP_008376259.1| - 0.35 10.8 0.5 0.7 9.8 0.3 1.5 1 0 0 1 1 1 0 bZIP transcription factor Arch_flagellin PF01917.11 gi|529077257|ref|YP_008376260.1| - 1.8e-07 30.9 1.9 2e-07 30.8 1.3 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin DUF4352 PF11611.3 gi|529077257|ref|YP_008376260.1| - 0.0066 16.5 0.5 0.0092 16.1 0.3 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4352) DUF1859 PF08948.5 gi|529077257|ref|YP_008376260.1| - 0.007 16.0 1.5 2.3 7.9 0.4 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF1859) Arch_flagellin PF01917.11 gi|529077258|ref|YP_008376261.1| - 1e-16 61.1 4.4 2.2e-16 60.0 3.0 1.6 1 1 0 1 1 1 1 Archaebacterial flagellin CARDB PF07705.6 gi|529077258|ref|YP_008376261.1| - 0.0023 17.9 0.1 0.004 17.1 0.0 1.5 1 1 0 1 1 1 1 CARDB HAMP PF00672.20 gi|529077258|ref|YP_008376261.1| - 0.093 12.9 0.3 1.6 9.0 0.0 2.1 2 0 0 2 2 2 0 HAMP domain KaiC PF06745.8 gi|529077259|ref|YP_008376262.1| - 1.3e-13 50.6 0.1 2.1e-13 49.9 0.1 1.4 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|529077259|ref|YP_008376262.1| - 7.8e-10 38.4 0.0 1.1e-09 37.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain UPF0079 PF02367.12 gi|529077259|ref|YP_008376262.1| - 0.00012 21.7 0.1 0.00029 20.4 0.1 1.9 1 1 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 NACHT PF05729.7 gi|529077259|ref|YP_008376262.1| - 0.00052 19.6 0.1 0.0053 16.4 0.0 2.0 1 1 0 1 1 1 1 NACHT domain AAA_22 PF13401.1 gi|529077259|ref|YP_008376262.1| - 0.0026 17.9 0.0 0.0052 16.9 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|529077259|ref|YP_008376262.1| - 0.0061 16.8 0.2 0.011 15.9 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|529077259|ref|YP_008376262.1| - 0.017 15.1 0.1 0.039 13.9 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain TIP49 PF06068.8 gi|529077259|ref|YP_008376262.1| - 0.034 12.8 0.0 4 6.0 0.0 2.3 2 0 0 2 2 2 0 TIP49 C-terminus AAA PF00004.24 gi|529077259|ref|YP_008376262.1| - 0.045 13.9 0.4 0.1 12.8 0.3 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PRK PF00485.13 gi|529077259|ref|YP_008376262.1| - 0.13 11.8 0.0 0.24 10.9 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family FF PF01846.14 gi|529077259|ref|YP_008376262.1| - 0.13 12.1 0.6 0.43 10.5 0.0 2.0 2 0 0 2 2 2 0 FF domain APS_kinase PF01583.15 gi|529077259|ref|YP_008376262.1| - 0.14 11.8 0.3 0.88 9.2 0.0 2.3 2 1 0 2 2 2 0 Adenylylsulphate kinase T2SE PF00437.15 gi|529077260|ref|YP_008376263.1| - 1.1e-43 149.1 0.0 1.5e-43 148.6 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.1 gi|529077260|ref|YP_008376263.1| - 0.0023 17.9 0.0 0.022 14.7 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|529077260|ref|YP_008376263.1| - 0.0056 16.1 0.1 0.011 15.2 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|529077260|ref|YP_008376263.1| - 0.0058 16.9 0.0 0.043 14.1 0.0 2.3 3 0 0 3 3 3 1 ABC transporter AAA_22 PF13401.1 gi|529077260|ref|YP_008376263.1| - 0.015 15.4 0.0 0.043 13.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain AIG1 PF04548.11 gi|529077260|ref|YP_008376263.1| - 0.055 12.5 0.0 0.2 10.7 0.0 1.9 2 0 0 2 2 2 0 AIG1 family MobB PF03205.9 gi|529077260|ref|YP_008376263.1| - 0.061 13.0 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B FtsK_SpoIIIE PF01580.13 gi|529077260|ref|YP_008376263.1| - 0.075 12.5 0.0 0.15 11.4 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family Dynamin_N PF00350.18 gi|529077260|ref|YP_008376263.1| - 0.077 12.8 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 Dynamin family KIX PF02172.11 gi|529077260|ref|YP_008376263.1| - 0.11 12.6 0.1 0.24 11.4 0.1 1.5 1 0 0 1 1 1 0 KIX domain AAA_23 PF13476.1 gi|529077260|ref|YP_008376263.1| - 0.6 10.3 2.5 0.83 9.9 0.0 2.3 3 0 0 3 3 3 0 AAA domain T2SF PF00482.18 gi|529077261|ref|YP_008376264.1| - 7.8e-17 61.3 8.0 3.1e-09 36.7 2.7 3.2 2 1 0 2 2 2 2 Type II secretion system (T2SS), protein F AAA_32 PF13654.1 gi|529077261|ref|YP_008376264.1| - 0.0045 15.7 0.2 0.0089 14.7 0.1 1.5 2 0 0 2 2 2 1 AAA domain Vma12 PF11712.3 gi|529077261|ref|YP_008376264.1| - 0.4 10.3 3.2 8.5 6.0 0.9 3.0 3 0 0 3 3 3 0 Endoplasmic reticulum-based factor for assembly of V-ATPase DUF4083 PF13314.1 gi|529077261|ref|YP_008376264.1| - 6.6 6.6 13.9 8.6 6.2 0.9 4.5 5 0 0 5 5 5 0 Domain of unknown function (DUF4083) Polysacc_synt_C PF14667.1 gi|529077263|ref|YP_008376266.1| - 0.035 13.9 4.8 0.038 13.7 3.4 1.0 1 0 0 1 1 1 0 Polysaccharide biosynthesis C-terminal domain RseC_MucC PF04246.7 gi|529077263|ref|YP_008376266.1| - 0.18 11.3 5.0 0.24 10.9 3.5 1.1 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC CbiM PF01891.11 gi|529077263|ref|YP_008376266.1| - 0.19 11.3 4.4 0.21 11.1 3.1 1.0 1 0 0 1 1 1 0 Cobalt uptake substrate-specific transmembrane region MatE PF01554.13 gi|529077264|ref|YP_008376267.1| - 1.7e-59 200.1 33.9 4.7e-35 120.6 11.2 2.4 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|529077264|ref|YP_008376267.1| - 2.4e-07 30.6 11.2 2.4e-07 30.6 7.7 4.8 3 2 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain TetR_C_6 PF13977.1 gi|529077265|ref|YP_008376268.1| - 2.4e-18 66.2 2.6 2.4e-18 66.2 1.8 1.5 2 0 0 2 2 2 1 Bacterial transcriptional repressor TetR_N PF00440.18 gi|529077265|ref|YP_008376268.1| - 1.7e-10 40.3 0.3 3e-10 39.5 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family DUF294_C PF10335.4 gi|529077265|ref|YP_008376268.1| - 0.0019 17.8 0.1 0.39 10.3 0.0 2.2 2 0 0 2 2 2 2 Putative nucleotidyltransferase substrate binding domain TetR_C_4 PF08359.6 gi|529077265|ref|YP_008376268.1| - 0.02 14.8 0.0 0.038 13.9 0.0 1.4 1 0 0 1 1 1 0 YsiA-like protein, C-terminal region Sigma70_r4 PF04545.11 gi|529077265|ref|YP_008376268.1| - 0.041 13.1 0.0 0.089 12.1 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Tnp_1_2 PF13022.1 gi|529077265|ref|YP_008376268.1| - 0.043 13.6 0.0 0.099 12.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase TrbH PF07283.6 gi|529077265|ref|YP_008376268.1| - 0.12 12.2 0.1 0.42 10.4 0.0 1.8 2 1 0 2 2 2 0 Conjugal transfer protein TrbH zf-ribbon_3 PF13248.1 gi|529077266|ref|YP_008376269.1| - 1.6e-06 27.1 0.4 2.4e-06 26.5 0.3 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|529077266|ref|YP_008376269.1| - 2.2e-06 26.9 0.4 2.9e-06 26.5 0.3 1.2 1 0 0 1 1 1 1 zinc-ribbon domain TM2 PF05154.11 gi|529077266|ref|YP_008376269.1| - 3.2e-05 24.0 0.6 5e-05 23.4 0.4 1.3 1 0 0 1 1 1 1 TM2 domain DZR PF12773.2 gi|529077266|ref|YP_008376269.1| - 8.9e-05 22.2 1.4 0.00014 21.5 0.9 1.2 1 0 0 1 1 1 1 Double zinc ribbon Prok-RING_1 PF14446.1 gi|529077266|ref|YP_008376269.1| - 0.028 14.1 0.2 0.039 13.6 0.1 1.1 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Nudix_N_2 PF14803.1 gi|529077266|ref|YP_008376269.1| - 0.038 13.6 1.0 2.2 8.0 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal FdhE PF04216.7 gi|529077266|ref|YP_008376269.1| - 0.057 13.1 0.1 0.057 13.1 0.1 1.7 1 1 1 2 2 2 0 Protein involved in formate dehydrogenase formation Zn-ribbon_8 PF09723.5 gi|529077266|ref|YP_008376269.1| - 0.08 12.9 2.6 0.23 11.4 0.3 2.1 1 1 1 2 2 2 0 Zinc ribbon domain UPF0547 PF10571.4 gi|529077266|ref|YP_008376269.1| - 0.097 12.3 2.1 0.38 10.5 1.7 1.8 1 1 1 2 2 2 0 Uncharacterised protein family UPF0547 OrfB_Zn_ribbon PF07282.6 gi|529077266|ref|YP_008376269.1| - 0.15 11.7 0.0 0.73 9.5 0.1 1.9 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Abi PF02517.11 gi|529077266|ref|YP_008376269.1| - 0.18 11.9 1.1 0.3 11.2 0.7 1.5 1 1 0 1 1 1 0 CAAX protease self-immunity DUF329 PF03884.9 gi|529077266|ref|YP_008376269.1| - 0.18 11.4 2.2 0.3 10.6 1.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF329) zf-C4_Topoisom PF01396.14 gi|529077266|ref|YP_008376269.1| - 0.18 11.3 1.3 6.8 6.2 0.1 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DNA_ligase_ZBD PF03119.11 gi|529077266|ref|YP_008376269.1| - 0.18 11.5 1.9 2.6 7.8 0.1 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain YjgP_YjgQ PF03739.9 gi|529077266|ref|YP_008376269.1| - 0.49 9.0 3.7 0.59 8.8 2.5 1.1 1 0 0 1 1 1 0 Predicted permease YjgP/YjgQ family Rad50_zn_hook PF04423.9 gi|529077266|ref|YP_008376269.1| - 1.5 8.3 3.6 3 7.3 0.4 2.1 2 0 0 2 2 2 0 Rad50 zinc hook motif Sulfatase PF00884.18 gi|529077267|ref|YP_008376270.1| - 4.1e-36 124.7 0.0 5.8e-36 124.2 0.0 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|529077267|ref|YP_008376270.1| - 7.4e-09 35.3 0.2 6.3e-05 22.4 0.1 2.2 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase HAT PF02184.11 gi|529077267|ref|YP_008376270.1| - 0.0071 16.0 0.0 0.047 13.4 0.0 2.3 2 0 0 2 2 2 1 HAT (Half-A-TPR) repeat DUF1501 PF07394.7 gi|529077267|ref|YP_008376270.1| - 0.0076 15.1 0.1 0.016 14.1 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1501) GtrA PF04138.9 gi|529077268|ref|YP_008376271.1| - 8.6e-22 77.2 12.0 1e-21 77.0 8.3 1.0 1 0 0 1 1 1 1 GtrA-like protein MadM PF03818.8 gi|529077268|ref|YP_008376271.1| - 0.57 9.7 5.3 1.3 8.6 1.0 2.5 2 1 0 2 2 2 0 Malonate/sodium symporter MadM subunit TrmB PF01978.14 gi|529077269|ref|YP_008376272.1| - 1.5e-08 34.1 0.0 2.5e-08 33.4 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.11 gi|529077269|ref|YP_008376272.1| - 0.0027 17.7 0.0 0.0041 17.2 0.0 1.3 1 0 0 1 1 1 1 Penicillinase repressor Cdc6_C PF09079.6 gi|529077269|ref|YP_008376272.1| - 0.0032 17.1 0.0 0.0087 15.7 0.0 1.7 2 0 0 2 2 2 1 CDC6, C terminal HTH_11 PF08279.7 gi|529077269|ref|YP_008376272.1| - 0.0049 16.4 0.0 0.0097 15.5 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_29 PF13551.1 gi|529077269|ref|YP_008376272.1| - 0.0056 16.8 0.0 0.01 15.9 0.0 1.7 1 1 0 1 1 1 1 Winged helix-turn helix HTH_20 PF12840.2 gi|529077269|ref|YP_008376272.1| - 0.0079 15.9 0.0 0.018 14.8 0.0 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_40 PF14493.1 gi|529077269|ref|YP_008376272.1| - 0.0089 16.2 0.0 0.12 12.5 0.0 2.1 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|529077269|ref|YP_008376272.1| - 0.016 14.6 0.0 0.079 12.3 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|529077269|ref|YP_008376272.1| - 0.025 14.6 0.0 0.53 10.4 0.0 2.2 2 0 0 2 2 2 0 Transcriptional regulator HTH_36 PF13730.1 gi|529077269|ref|YP_008376272.1| - 0.027 14.6 0.0 0.044 13.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DUF374 PF04028.8 gi|529077269|ref|YP_008376272.1| - 0.03 13.5 0.0 0.055 12.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF374) HTH_IclR PF09339.5 gi|529077269|ref|YP_008376272.1| - 0.052 13.1 0.0 0.24 11.0 0.0 2.1 2 0 0 2 2 2 0 IclR helix-turn-helix domain FaeA PF04703.7 gi|529077269|ref|YP_008376272.1| - 0.052 13.7 0.0 0.1 12.7 0.0 1.5 1 0 0 1 1 1 0 FaeA-like protein TetR_N PF00440.18 gi|529077269|ref|YP_008376272.1| - 0.097 12.3 0.0 0.27 10.9 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family DUF4423 PF14394.1 gi|529077269|ref|YP_008376272.1| - 0.099 12.1 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) PIN_4 PF13638.1 gi|529077270|ref|YP_008376273.1| - 0.11 12.5 0.0 0.14 12.2 0.0 1.1 1 0 0 1 1 1 0 PIN domain DHHA1 PF02272.14 gi|529077271|ref|YP_008376274.1| - 0.0004 20.0 0.1 0.0017 18.0 0.1 2.0 1 0 0 1 1 1 1 DHHA1 domain Usp PF00582.21 gi|529077272|ref|YP_008376275.1| - 1.3e-33 116.1 3.8 1.5e-33 115.9 2.7 1.0 1 0 0 1 1 1 1 Universal stress protein family Usp PF00582.21 gi|529077273|ref|YP_008376276.1| - 3.6e-19 69.3 3.1 4.2e-19 69.1 2.2 1.1 1 0 0 1 1 1 1 Universal stress protein family ETF PF01012.16 gi|529077273|ref|YP_008376276.1| - 0.35 10.5 4.0 8.9 6.0 2.8 2.2 1 1 0 1 1 1 0 Electron transfer flavoprotein domain Acetyltransf_1 PF00583.19 gi|529077274|ref|YP_008376277.1| - 3.1e-18 65.5 0.0 6.7e-18 64.5 0.0 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.1 gi|529077274|ref|YP_008376277.1| - 3.7e-09 36.8 0.0 4.8e-09 36.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|529077274|ref|YP_008376277.1| - 1.9e-07 31.1 0.0 3.8e-07 30.2 0.0 1.5 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|529077274|ref|YP_008376277.1| - 2e-07 31.0 0.0 2.6e-07 30.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|529077274|ref|YP_008376277.1| - 5.3e-07 29.7 0.0 1.1e-06 28.7 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|529077274|ref|YP_008376277.1| - 8.1e-05 22.2 0.0 0.00017 21.2 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|529077274|ref|YP_008376277.1| - 0.0013 18.6 0.0 0.015 15.1 0.0 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|529077274|ref|YP_008376277.1| - 0.018 14.8 0.0 0.044 13.6 0.0 1.7 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|529077274|ref|YP_008376277.1| - 0.029 14.3 0.3 0.045 13.7 0.2 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Usp PF00582.21 gi|529077275|ref|YP_008376278.1| - 4.3e-17 62.6 0.7 9.9e-17 61.4 0.5 1.5 1 1 0 1 1 1 1 Universal stress protein family mIF3 PF14877.1 gi|529077275|ref|YP_008376278.1| - 0.081 12.2 0.0 0.1 11.9 0.0 1.1 1 0 0 1 1 1 0 Mitochondrial translation initiation factor UPF0547 PF10571.4 gi|529077276|ref|YP_008376279.1| - 0.01 15.4 0.1 0.018 14.7 0.1 1.3 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 CDC37_M PF08565.6 gi|529077276|ref|YP_008376279.1| - 0.047 13.1 0.1 0.094 12.1 0.1 1.5 1 0 0 1 1 1 0 Cdc37 Hsp90 binding domain Amidohydro_4 PF13147.1 gi|529077277|ref|YP_008376280.1| - 1.3e-32 113.9 15.4 1.8e-32 113.4 10.7 1.2 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|529077277|ref|YP_008376280.1| - 1.1e-18 67.9 0.0 3.3e-18 66.4 0.0 1.7 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|529077277|ref|YP_008376280.1| - 4.6e-15 55.1 0.6 2.2e-14 53.0 0.1 2.5 3 0 0 3 3 3 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|529077277|ref|YP_008376280.1| - 4.6e-06 26.1 14.1 0.00086 18.6 6.9 2.9 2 1 0 2 2 2 2 Amidohydrolase family TatD_DNase PF01026.16 gi|529077277|ref|YP_008376280.1| - 0.0087 15.2 0.3 0.1 11.7 0.1 2.7 2 1 1 3 3 3 1 TatD related DNase DHOase PF12890.2 gi|529077277|ref|YP_008376280.1| - 0.027 14.1 0.0 0.055 13.1 0.0 1.5 2 0 0 2 2 2 0 Dihydro-orotase-like DUF4432 PF14486.1 gi|529077278|ref|YP_008376281.1| - 2.8e-21 75.3 0.0 7e-21 74.0 0.0 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4432) Aldose_epim PF01263.15 gi|529077278|ref|YP_008376281.1| - 0.0026 16.9 0.0 0.0082 15.2 0.0 1.7 1 1 0 1 1 1 1 Aldose 1-epimerase DUF4380 PF14315.1 gi|529077278|ref|YP_008376281.1| - 0.025 13.7 0.1 0.18 10.9 0.0 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4380) Acetyltransf_1 PF00583.19 gi|529077279|ref|YP_008376282.1| - 1.2e-16 60.4 0.3 1.8e-16 59.9 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|529077279|ref|YP_008376282.1| - 1.9e-14 53.5 0.0 2.7e-14 53.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|529077279|ref|YP_008376282.1| - 6.3e-11 42.4 0.1 7.6e-11 42.1 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|529077279|ref|YP_008376282.1| - 5.6e-08 32.6 0.0 1.2e-07 31.5 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|529077279|ref|YP_008376282.1| - 7.6e-08 32.4 0.9 1.1e-07 31.9 0.6 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|529077279|ref|YP_008376282.1| - 1e-05 25.1 0.0 1.5e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|529077279|ref|YP_008376282.1| - 2.2e-05 24.4 0.0 2.8e-05 24.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|529077279|ref|YP_008376282.1| - 0.00018 21.6 0.0 0.00022 21.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltr_2 PF13718.1 gi|529077279|ref|YP_008376282.1| - 0.0011 18.3 0.0 0.0018 17.6 0.0 1.4 1 0 0 1 1 1 1 GNAT acetyltransferase 2 Glyoxalase_3 PF13468.1 gi|529077279|ref|YP_008376282.1| - 0.058 13.3 0.5 0.2 11.5 0.1 1.8 2 0 0 2 2 2 0 Glyoxalase-like domain Acetyltransf_8 PF13523.1 gi|529077279|ref|YP_008376282.1| - 0.071 12.9 0.0 0.1 12.4 0.0 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Isochorismatase PF00857.15 gi|529077280|ref|YP_008376283.1| - 3.3e-46 157.3 0.1 3.7e-46 157.2 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family Peptidase_M76 PF09768.4 gi|529077281|ref|YP_008376284.1| - 0.0011 18.4 0.1 0.0018 17.7 0.1 1.2 1 0 0 1 1 1 1 Peptidase M76 family Peptidase_MA_2 PF13485.1 gi|529077281|ref|YP_008376284.1| - 0.0029 17.6 0.3 0.0094 15.9 0.0 2.0 2 1 0 2 2 2 1 Peptidase MA superfamily PIN PF01850.16 gi|529077282|ref|YP_008376285.1| - 0.00017 21.8 0.1 0.00019 21.7 0.1 1.1 1 0 0 1 1 1 1 PIN domain Antitoxin-MazE PF04014.13 gi|529077283|ref|YP_008376286.1| - 6.4e-12 44.9 0.2 1.1e-11 44.2 0.1 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE ANT PF03374.9 gi|529077283|ref|YP_008376286.1| - 0.075 13.0 0.0 0.14 12.2 0.0 1.5 1 0 0 1 1 1 0 Phage antirepressor protein KilAC domain QRPTase_C PF01729.14 gi|529077284|ref|YP_008376287.1| - 5.2e-17 61.8 0.0 8.1e-17 61.2 0.0 1.3 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|529077284|ref|YP_008376287.1| - 1.3e-05 24.9 0.0 3.5e-05 23.5 0.0 1.8 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain DHDPS PF00701.17 gi|529077285|ref|YP_008376288.1| - 2.2e-90 302.1 0.0 2.7e-90 301.8 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family PEP_mutase PF13714.1 gi|529077285|ref|YP_008376288.1| - 0.0023 17.1 0.1 0.0038 16.4 0.1 1.3 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase ThiG PF05690.9 gi|529077285|ref|YP_008376288.1| - 0.0063 15.6 0.0 0.0098 14.9 0.0 1.2 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|529077285|ref|YP_008376288.1| - 0.027 13.6 0.5 0.043 12.9 0.3 1.3 1 0 0 1 1 1 0 Nitronate monooxygenase Peripla_BP_1 PF00532.16 gi|529077285|ref|YP_008376288.1| - 0.12 11.5 0.0 0.24 10.5 0.0 1.5 1 0 0 1 1 1 0 Periplasmic binding proteins and sugar binding domain of LacI family DapB_C PF05173.9 gi|529077286|ref|YP_008376289.1| - 6e-40 136.0 0.0 8.6e-40 135.5 0.0 1.2 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.15 gi|529077286|ref|YP_008376289.1| - 2.4e-26 92.0 0.4 4.6e-26 91.1 0.3 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Saccharop_dh PF03435.13 gi|529077286|ref|YP_008376289.1| - 0.00016 20.7 2.0 0.00027 20.0 1.4 1.3 1 1 0 1 1 1 1 Saccharopine dehydrogenase GFO_IDH_MocA PF01408.17 gi|529077286|ref|YP_008376289.1| - 0.0026 18.2 0.3 0.0058 17.1 0.2 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Epimerase PF01370.16 gi|529077286|ref|YP_008376289.1| - 0.0045 16.4 0.0 0.012 15.0 0.0 1.7 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|529077286|ref|YP_008376289.1| - 0.0067 15.3 0.5 0.017 14.0 0.4 1.7 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|529077286|ref|YP_008376289.1| - 0.013 15.5 4.0 0.017 15.1 2.4 1.4 1 1 0 1 1 1 0 NADH(P)-binding Peripla_BP_6 PF13458.1 gi|529077286|ref|YP_008376289.1| - 0.018 14.3 2.5 0.038 13.3 1.7 1.6 1 1 1 2 2 2 0 Periplasmic binding protein NAD_binding_3 PF03447.11 gi|529077286|ref|YP_008376289.1| - 0.052 13.9 1.4 0.1 12.9 0.5 1.8 2 0 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain DUF763 PF05559.6 gi|529077286|ref|YP_008376289.1| - 0.16 10.8 0.0 0.24 10.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF763) THDPS_N_2 PF14805.1 gi|529077287|ref|YP_008376290.1| - 8.6e-22 76.7 0.4 1.3e-21 76.2 0.3 1.3 1 0 0 1 1 1 1 Tetrahydrodipicolinate N-succinyltransferase N-terminal Hexapep PF00132.19 gi|529077287|ref|YP_008376290.1| - 8.8e-13 47.1 8.3 5.4e-06 25.6 2.2 3.3 3 0 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|529077287|ref|YP_008376290.1| - 0.00016 21.1 16.4 0.016 14.7 0.7 2.9 3 0 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase Unstab_antitox PF09720.5 gi|529077287|ref|YP_008376290.1| - 0.17 11.6 1.8 0.4 10.3 1.3 1.6 1 0 0 1 1 1 0 Putative addiction module component PIN PF01850.16 gi|529077288|ref|YP_008376291.1| - 1.1e-09 38.7 3.9 1.2e-09 38.4 2.7 1.1 1 0 0 1 1 1 1 PIN domain Antitoxin-MazE PF04014.13 gi|529077289|ref|YP_008376292.1| - 0.0024 17.5 0.7 0.0043 16.7 0.5 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE Malate_DH PF12434.3 gi|529077289|ref|YP_008376292.1| - 0.02 14.5 1.0 0.04 13.6 0.7 1.5 1 0 0 1 1 1 0 Malate dehydrogenase enzyme RNase_HII PF01351.13 gi|529077290|ref|YP_008376293.1| - 4.7e-37 127.5 0.0 5.5e-37 127.3 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII THUMP PF02926.12 gi|529077291|ref|YP_008376294.1| - 1.8e-09 37.6 0.0 4.2e-09 36.4 0.0 1.6 2 0 0 2 2 2 1 THUMP domain DnaJ_CXXCXGXG PF00684.14 gi|529077291|ref|YP_008376294.1| - 0.0043 17.0 0.9 0.0043 17.0 0.7 2.6 3 0 0 3 3 3 1 DnaJ central domain DNA_pol3_a_NI PF14480.1 gi|529077291|ref|YP_008376294.1| - 0.2 11.3 0.0 0.35 10.5 0.0 1.3 1 0 0 1 1 1 0 DNA polymerase III polC-type N-terminus I BacA PF02673.13 gi|529077292|ref|YP_008376295.1| - 1.3e-44 152.3 15.8 1.6e-44 152.0 10.9 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA MitoNEET_N PF10660.4 gi|529077292|ref|YP_008376295.1| - 0.034 14.0 8.0 1.8 8.4 0.6 3.0 2 0 0 2 2 2 0 Iron-containing outer mitochondrial membrane protein N-terminus Polysacc_synt PF01943.12 gi|529077293|ref|YP_008376296.1| - 1.6e-06 27.6 0.6 2.3e-06 27.0 0.4 1.3 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|529077293|ref|YP_008376296.1| - 2.4e-06 27.2 8.1 0.00015 21.3 5.6 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|529077293|ref|YP_008376296.1| - 0.00081 19.2 6.3 0.00081 19.2 4.3 1.8 1 1 0 2 2 2 1 Polysaccharide biosynthesis C-terminal domain DUF2613 PF11021.3 gi|529077293|ref|YP_008376296.1| - 5.7 6.7 9.3 6.8 6.4 0.1 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2613) CheF-arch PF04283.7 gi|529077294|ref|YP_008376297.1| - 5.4e-30 104.2 0.0 1.4e-29 102.8 0.0 1.6 1 1 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea TrmB PF01978.14 gi|529077294|ref|YP_008376297.1| - 0.085 12.5 0.3 0.17 11.5 0.2 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Glyco_hydro_10 PF00331.15 gi|529077295|ref|YP_008376298.1| - 3.7e-25 88.6 0.0 5.4e-25 88.0 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 10 CarboxypepD_reg PF13620.1 gi|529077295|ref|YP_008376298.1| - 0.00035 20.5 2.3 0.031 14.3 0.3 2.9 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain TAT_signal PF10518.4 gi|529077295|ref|YP_008376298.1| - 0.0095 15.8 4.2 0.026 14.4 2.9 1.8 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Dockerin_1 PF00404.13 gi|529077295|ref|YP_008376298.1| - 0.22 11.2 14.8 0.19 11.5 0.3 3.2 3 0 0 3 3 3 0 Dockerin type I repeat EF-hand_6 PF13405.1 gi|529077295|ref|YP_008376298.1| - 0.59 10.1 2.9 0.64 10.0 0.1 2.6 2 0 0 2 2 2 0 EF-hand domain Glyco_hydro_10 PF00331.15 gi|529077296|ref|YP_008376299.1| - 7.7e-36 123.7 0.8 1.2e-35 123.1 0.6 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 10 CarboxypepD_reg PF13620.1 gi|529077296|ref|YP_008376299.1| - 0.00038 20.4 1.3 0.09 12.8 0.1 2.8 2 0 0 2 2 2 2 Carboxypeptidase regulatory-like domain TAT_signal PF10518.4 gi|529077296|ref|YP_008376299.1| - 0.0049 16.7 1.7 0.015 15.2 1.2 1.9 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Dockerin_1 PF00404.13 gi|529077296|ref|YP_008376299.1| - 0.057 13.1 4.9 1.4 8.7 0.3 3.3 2 0 0 2 2 2 0 Dockerin type I repeat Unstab_antitox PF09720.5 gi|529077296|ref|YP_008376299.1| - 0.13 11.9 2.6 0.42 10.3 1.8 1.8 1 0 0 1 1 1 0 Putative addiction module component Peptidase_S8 PF00082.17 gi|529077297|ref|YP_008376300.1| - 2e-45 155.1 12.1 2e-45 155.1 8.4 2.0 2 0 0 2 2 2 1 Subtilase family CARDB PF07705.6 gi|529077297|ref|YP_008376300.1| - 1e-17 64.0 18.0 2.8e-07 30.5 0.2 5.2 5 0 0 5 5 5 4 CARDB A2M PF00207.17 gi|529077297|ref|YP_008376300.1| - 0.0026 17.2 0.7 12 5.5 0.0 4.2 5 0 0 5 5 5 1 Alpha-2-macroglobulin family Fn3-like PF14310.1 gi|529077297|ref|YP_008376300.1| - 0.021 14.7 3.2 2.9 7.8 0.1 5.0 5 1 0 5 5 5 0 Fibronectin type III-like domain Transglut_C PF00927.17 gi|529077297|ref|YP_008376300.1| - 0.061 13.3 0.1 2.1 8.4 0.0 3.1 2 0 0 2 2 2 0 Transglutaminase family, C-terminal ig like domain Inhibitor_I9 PF05922.11 gi|529077297|ref|YP_008376300.1| - 0.14 12.7 0.1 0.29 11.7 0.0 1.5 1 0 0 1 1 1 0 Peptidase inhibitor I9 TRAP_beta PF05753.9 gi|529077297|ref|YP_008376300.1| - 0.15 11.2 1.9 3.2 6.8 0.0 2.9 3 0 0 3 3 3 0 Translocon-associated protein beta (TRAPB) GTP1_OBG PF01018.17 gi|529077300|ref|YP_008376303.1| - 0.014 15.0 0.1 0.044 13.4 0.1 1.8 1 0 0 1 1 1 0 GTP1/OBG EMP24_GP25L PF01105.19 gi|529077300|ref|YP_008376303.1| - 1.4 8.5 12.3 9 5.9 0.2 4.0 3 1 1 4 4 4 0 emp24/gp25L/p24 family/GOLD TMF_DNA_bd PF12329.3 gi|529077301|ref|YP_008376304.1| - 1.8e-05 24.4 11.8 1.8e-05 24.4 8.2 3.4 2 1 1 3 3 3 1 TATA element modulatory factor 1 DNA binding Reo_sigmaC PF04582.7 gi|529077301|ref|YP_008376304.1| - 6.3e-05 22.3 12.8 6.3e-05 22.3 8.9 3.0 2 1 1 3 3 3 1 Reovirus sigma C capsid protein IncA PF04156.9 gi|529077301|ref|YP_008376304.1| - 7.1e-05 22.4 20.3 7.1e-05 22.4 14.1 2.4 1 1 1 2 2 2 1 IncA protein AAA_13 PF13166.1 gi|529077301|ref|YP_008376304.1| - 0.00072 18.1 15.4 0.0011 17.4 10.7 1.2 1 0 0 1 1 1 1 AAA domain DUF869 PF05911.6 gi|529077301|ref|YP_008376304.1| - 0.00086 17.6 13.0 0.0016 16.7 9.0 1.4 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) DUF4200 PF13863.1 gi|529077301|ref|YP_008376304.1| - 0.0037 17.2 9.3 0.0037 17.2 6.4 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF4200) SlyX PF04102.7 gi|529077301|ref|YP_008376304.1| - 0.0041 17.4 29.9 0.016 15.5 5.5 3.6 1 1 2 3 3 3 2 SlyX Atg14 PF10186.4 gi|529077301|ref|YP_008376304.1| - 0.0081 15.1 19.2 0.046 12.6 7.4 2.2 1 1 1 2 2 2 1 UV radiation resistance protein and autophagy-related subunit 14 DivIC PF04977.10 gi|529077301|ref|YP_008376304.1| - 0.01 15.3 0.8 0.01 15.3 0.5 4.1 1 1 3 4 4 4 0 Septum formation initiator Myosin_tail_1 PF01576.14 gi|529077301|ref|YP_008376304.1| - 0.012 13.4 22.5 0.021 12.5 15.6 1.3 1 0 0 1 1 1 0 Myosin tail IFT57 PF10498.4 gi|529077301|ref|YP_008376304.1| - 0.018 13.8 20.1 0.026 13.2 7.0 2.2 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 ATG16 PF08614.6 gi|529077301|ref|YP_008376304.1| - 0.025 14.3 26.9 0.18 11.6 10.1 2.4 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) zf-C4H2 PF10146.4 gi|529077301|ref|YP_008376304.1| - 0.026 14.5 6.7 0.054 13.5 4.6 1.4 1 0 0 1 1 1 0 Zinc finger-containing protein FliJ PF02050.11 gi|529077301|ref|YP_008376304.1| - 0.043 13.8 20.1 0.31 11.0 5.5 2.2 1 1 1 2 2 2 0 Flagellar FliJ protein Pox_A_type_inc PF04508.7 gi|529077301|ref|YP_008376304.1| - 0.061 13.1 0.1 0.061 13.1 0.1 5.5 5 1 1 6 6 6 0 Viral A-type inclusion protein repeat Filament PF00038.16 gi|529077301|ref|YP_008376304.1| - 0.061 12.7 22.5 0.25 10.7 15.6 1.8 1 1 0 1 1 1 0 Intermediate filament protein DUF3584 PF12128.3 gi|529077301|ref|YP_008376304.1| - 0.075 10.3 21.7 0.12 9.6 15.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF4407 PF14362.1 gi|529077301|ref|YP_008376304.1| - 0.088 11.7 13.5 0.14 11.0 9.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DUF211 PF02680.9 gi|529077301|ref|YP_008376304.1| - 0.088 12.6 1.1 3.4 7.5 0.0 3.1 2 0 0 2 2 2 0 Uncharacterized ArCR, COG1888 MscS_porin PF12795.2 gi|529077301|ref|YP_008376304.1| - 0.097 11.9 39.0 0.12 11.6 11.8 2.2 1 1 1 2 2 2 0 Mechanosensitive ion channel porin domain DUF641 PF04859.7 gi|529077301|ref|YP_008376304.1| - 0.13 12.0 17.3 1.9 8.2 2.3 2.9 1 1 2 3 3 3 0 Plant protein of unknown function (DUF641) DUF2051 PF09738.4 gi|529077301|ref|YP_008376304.1| - 0.16 11.2 18.3 0.33 10.2 12.7 1.5 1 0 0 1 1 1 0 Double stranded RNA binding protein (DUF2051) Spc7 PF08317.6 gi|529077301|ref|YP_008376304.1| - 0.17 10.5 26.9 0.14 10.8 11.6 2.1 1 1 1 2 2 2 0 Spc7 kinetochore protein DUF3972 PF13118.1 gi|529077301|ref|YP_008376304.1| - 0.19 11.8 16.9 0.22 11.6 1.3 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF3972) HrpB7 PF09486.5 gi|529077301|ref|YP_008376304.1| - 0.22 11.4 8.9 0.55 10.1 5.8 1.9 1 1 0 1 1 1 0 Bacterial type III secretion protein (HrpB7) DUF4201 PF13870.1 gi|529077301|ref|YP_008376304.1| - 0.27 10.6 13.6 2.6 7.4 9.5 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4201) Laminin_I PF06008.9 gi|529077301|ref|YP_008376304.1| - 0.52 9.5 24.4 5.4 6.2 1.9 2.9 1 1 1 2 2 2 0 Laminin Domain I ADIP PF11559.3 gi|529077301|ref|YP_008376304.1| - 0.55 10.1 28.1 0.26 11.1 5.2 3.0 1 1 1 3 3 3 0 Afadin- and alpha -actinin-Binding DUF3450 PF11932.3 gi|529077301|ref|YP_008376304.1| - 0.56 9.4 24.3 1.3 8.2 5.7 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) DUF948 PF06103.6 gi|529077301|ref|YP_008376304.1| - 0.67 9.8 17.4 0.23 11.3 3.2 3.2 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) WEMBL PF05701.6 gi|529077301|ref|YP_008376304.1| - 0.69 8.2 26.4 1.5 7.2 18.3 1.4 1 1 0 1 1 1 0 Weak chloroplast movement under blue light CENP-F_leu_zip PF10473.4 gi|529077301|ref|YP_008376304.1| - 0.72 9.7 29.1 0.41 10.5 11.7 2.3 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Cortex-I_coil PF09304.5 gi|529077301|ref|YP_008376304.1| - 0.76 9.8 22.5 2.8 8.0 8.5 2.7 1 1 1 2 2 2 0 Cortexillin I, coiled coil TMCO5 PF14992.1 gi|529077301|ref|YP_008376304.1| - 0.8 8.7 20.5 1.3 8.1 14.2 1.2 1 0 0 1 1 1 0 TMCO5 family NYD-SP28 PF14772.1 gi|529077301|ref|YP_008376304.1| - 0.9 9.6 18.1 0.2 11.7 4.5 3.1 1 1 1 3 3 3 0 Sperm tail Seryl_tRNA_N PF02403.17 gi|529077301|ref|YP_008376304.1| - 1.1 9.3 16.8 0.23 11.4 3.3 3.0 1 1 2 3 3 3 0 Seryl-tRNA synthetase N-terminal domain Cep57_MT_bd PF06657.8 gi|529077301|ref|YP_008376304.1| - 1.2 9.1 12.1 7.2 6.6 1.6 2.7 1 1 1 2 2 2 0 Centrosome microtubule-binding domain of Cep57 TPR_MLP1_2 PF07926.7 gi|529077301|ref|YP_008376304.1| - 1.5 8.5 26.9 18 5.0 10.9 2.8 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein Fib_alpha PF08702.5 gi|529077301|ref|YP_008376304.1| - 1.5 8.9 19.9 0.94 9.5 6.2 2.2 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family DUF1664 PF07889.7 gi|529077301|ref|YP_008376304.1| - 1.6 8.5 16.3 1.8 8.3 2.4 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) SseC PF04888.7 gi|529077301|ref|YP_008376304.1| - 1.7 7.9 16.9 6.4 6.0 11.7 1.8 1 1 0 1 1 1 0 Secretion system effector C (SseC) like family DUF745 PF05335.8 gi|529077301|ref|YP_008376304.1| - 2 7.8 18.4 1.3 8.4 3.9 2.5 2 1 1 3 3 2 0 Protein of unknown function (DUF745) Laminin_II PF06009.7 gi|529077301|ref|YP_008376304.1| - 3.3 7.4 17.9 2.4 7.9 7.4 2.5 1 1 1 2 2 2 0 Laminin Domain II DUF3552 PF12072.3 gi|529077301|ref|YP_008376304.1| - 3.5 6.8 26.8 2.3 7.3 5.9 2.9 1 1 2 3 3 3 0 Domain of unknown function (DUF3552) Nup88 PF10168.4 gi|529077301|ref|YP_008376304.1| - 3.5 5.3 11.0 4.9 4.8 7.6 1.1 1 0 0 1 1 1 0 Nuclear pore component DUF812 PF05667.6 gi|529077301|ref|YP_008376304.1| - 3.7 5.9 24.2 44 2.3 6.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF812) Bacillus_HBL PF05791.6 gi|529077301|ref|YP_008376304.1| - 4.4 6.6 19.9 3.6 6.9 4.0 2.4 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) HR1 PF02185.11 gi|529077301|ref|YP_008376304.1| - 4.6 7.0 18.8 1.8 8.3 1.4 3.4 2 1 1 3 3 3 0 Hr1 repeat ERM PF00769.14 gi|529077301|ref|YP_008376304.1| - 4.9 6.6 22.1 1.2 8.5 7.7 2.1 1 1 1 2 2 2 0 Ezrin/radixin/moesin family NPCBM_assoc PF10633.4 gi|529077301|ref|YP_008376304.1| - 4.9 7.2 10.5 1.2 9.2 0.0 4.9 5 2 0 5 5 2 0 NPCBM-associated, NEW3 domain of alpha-galactosidase RasGAP_C PF03836.10 gi|529077301|ref|YP_008376304.1| - 5.8 6.5 15.2 0.79 9.4 4.3 2.2 2 0 0 2 2 2 0 RasGAP C-terminus Mnd1 PF03962.10 gi|529077301|ref|YP_008376304.1| - 5.9 6.5 21.2 1.3 8.5 5.6 2.2 1 1 1 2 2 2 0 Mnd1 family FemAB PF02388.11 gi|529077301|ref|YP_008376304.1| - 6.3 5.3 12.4 0.5 8.9 1.4 2.1 1 1 1 2 2 2 0 FemAB family COG2 PF06148.6 gi|529077301|ref|YP_008376304.1| - 6.6 6.6 14.6 13 5.6 1.5 3.0 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Mod_r PF07200.8 gi|529077301|ref|YP_008376304.1| - 6.7 6.6 20.9 0.68 9.8 7.9 2.3 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein TMPIT PF07851.8 gi|529077301|ref|YP_008376304.1| - 7.7 5.4 15.2 4.2 6.3 3.2 2.1 1 1 1 2 2 2 0 TMPIT-like protein TBPIP PF07106.8 gi|529077301|ref|YP_008376304.1| - 8.3 5.9 23.2 0.83 9.1 7.1 2.4 1 1 2 3 3 3 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Prefoldin PF02996.12 gi|529077301|ref|YP_008376304.1| - 8.6 6.0 23.1 0.18 11.4 1.8 3.9 1 1 4 5 5 5 0 Prefoldin subunit DUF2730 PF10805.3 gi|529077301|ref|YP_008376304.1| - 8.7 6.1 8.0 15 5.3 0.5 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2730) CheF-arch PF04283.7 gi|529077302|ref|YP_008376305.1| - 3.4e-54 183.3 0.4 5.7e-54 182.6 0.3 1.3 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea NTP_transferase PF00483.18 gi|529077303|ref|YP_008376306.1| - 7.8e-38 130.1 0.0 9.4e-38 129.9 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|529077303|ref|YP_008376306.1| - 2.7e-20 73.0 0.5 4e-19 69.2 0.1 2.3 2 0 0 2 2 2 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|529077303|ref|YP_008376306.1| - 1.1e-17 62.6 13.8 1.2e-08 34.1 1.3 5.1 3 1 4 7 7 7 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|529077303|ref|YP_008376306.1| - 4e-08 32.6 8.9 5e-05 22.7 2.6 3.8 2 1 1 3 3 3 2 Hexapeptide repeat of succinyl-transferase IspD PF01128.14 gi|529077303|ref|YP_008376306.1| - 0.0021 17.6 0.0 0.0039 16.7 0.0 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.21 gi|529077303|ref|YP_008376306.1| - 0.07 12.8 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 SIS PF01380.17 gi|529077304|ref|YP_008376307.1| - 7.1e-53 177.7 0.3 1.3e-25 89.4 0.1 2.2 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|529077304|ref|YP_008376307.1| - 2.2e-24 85.9 0.1 4.8e-24 84.8 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|529077304|ref|YP_008376307.1| - 2.1e-20 72.7 0.0 3.7e-20 71.9 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|529077304|ref|YP_008376307.1| - 3.1e-19 68.9 0.0 3e-14 52.5 0.0 2.6 2 1 1 3 3 3 2 Glutamine amidotransferases class-II GATase_4 PF13230.1 gi|529077304|ref|YP_008376307.1| - 0.0026 16.4 0.0 0.0045 15.7 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferases class-II SIS_2 PF13580.1 gi|529077304|ref|YP_008376307.1| - 0.078 12.6 0.0 0.23 11.1 0.0 1.8 2 0 0 2 2 2 0 SIS domain CPSase_L_chain PF00289.17 gi|529077304|ref|YP_008376307.1| - 0.091 12.8 0.7 9.4 6.3 0.0 2.9 3 0 0 3 3 3 0 Carbamoyl-phosphate synthase L chain, N-terminal domain DUF3812 PF12757.2 gi|529077304|ref|YP_008376307.1| - 0.096 12.6 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3812) DUF4330 PF14221.1 gi|529077305|ref|YP_008376308.1| - 3.9e-33 114.6 24.9 2.4e-11 43.7 0.2 8.4 6 2 1 7 7 7 6 Domain of unknown function (DUF4330) CDC48_2 PF02933.12 gi|529077305|ref|YP_008376308.1| - 0.024 14.2 0.1 1.2 8.7 0.0 3.4 3 0 0 3 3 3 0 Cell division protein 48 (CDC48), domain 2 YagB_YeeU_YfjZ PF06154.6 gi|529077305|ref|YP_008376308.1| - 0.059 13.6 0.0 3.1 8.0 0.0 3.1 4 0 0 4 4 4 0 YagB/YeeU/YfjZ family Bac_transf PF02397.11 gi|529077307|ref|YP_008376310.1| - 1.1e-63 213.7 0.0 1.7e-63 213.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial sugar transferase Epimerase PF01370.16 gi|529077308|ref|YP_008376311.1| - 6.1e-63 212.4 0.0 7.5e-63 212.1 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|529077308|ref|YP_008376311.1| - 4.8e-25 87.8 0.0 6.4e-25 87.4 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|529077308|ref|YP_008376311.1| - 7.1e-19 67.7 0.2 8.6e-19 67.5 0.2 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|529077308|ref|YP_008376311.1| - 8.2e-18 64.3 0.0 7.9e-17 61.0 0.0 2.3 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|529077308|ref|YP_008376311.1| - 3.8e-14 52.2 0.0 2.2e-10 39.8 0.0 2.5 2 1 1 3 3 3 2 Male sterility protein adh_short PF00106.20 gi|529077308|ref|YP_008376311.1| - 4.8e-11 42.8 2.7 6.1e-11 42.5 0.3 2.0 2 0 0 2 2 2 1 short chain dehydrogenase NAD_binding_10 PF13460.1 gi|529077308|ref|YP_008376311.1| - 1.6e-10 41.2 1.8 1.6e-10 41.2 1.3 1.8 2 1 0 2 2 2 1 NADH(P)-binding NmrA PF05368.8 gi|529077308|ref|YP_008376311.1| - 5.6e-05 22.5 0.6 0.0001 21.6 0.1 1.6 2 0 0 2 2 2 1 NmrA-like family TrkA_N PF02254.13 gi|529077308|ref|YP_008376311.1| - 0.0011 18.9 0.8 0.003 17.5 0.1 2.0 2 0 0 2 2 2 1 TrkA-N domain Epimerase_Csub PF13950.1 gi|529077308|ref|YP_008376311.1| - 0.0014 18.5 0.0 0.0031 17.4 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit KR PF08659.5 gi|529077308|ref|YP_008376311.1| - 0.0043 16.7 3.9 0.018 14.6 0.6 2.9 2 1 0 2 2 2 1 KR domain Ldh_1_N PF00056.18 gi|529077308|ref|YP_008376311.1| - 0.22 11.3 0.9 0.4 10.5 0.6 1.4 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain eIF-6 PF01912.13 gi|529077309|ref|YP_008376312.1| - 4.7e-69 231.4 0.1 5.5e-69 231.2 0.0 1.0 1 0 0 1 1 1 1 eIF-6 family DUF1707 PF08044.6 gi|529077309|ref|YP_008376312.1| - 0.31 10.8 2.3 3.6 7.4 0.2 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1707) Ribosomal_L31e PF01198.14 gi|529077310|ref|YP_008376313.1| - 3.5e-24 84.2 0.0 3.7e-24 84.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L31e Ribosomal_L39 PF00832.15 gi|529077311|ref|YP_008376314.1| - 1.7e-21 75.3 7.7 2.1e-21 75.1 5.3 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein DUF4650 PF15509.1 gi|529077311|ref|YP_008376314.1| - 0.13 11.1 0.3 0.11 11.4 0.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4650) Zip PF02535.17 gi|529077312|ref|YP_008376315.1| - 3.5e-20 72.2 2.0 3.5e-20 72.2 1.4 2.9 1 1 1 2 2 2 1 ZIP Zinc transporter LigT_PEase PF02834.11 gi|529077313|ref|YP_008376316.1| - 4e-21 74.7 0.0 7e-14 51.5 0.0 2.1 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.1 gi|529077313|ref|YP_008376316.1| - 8.3e-16 58.0 0.0 1.1e-15 57.7 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.4 gi|529077313|ref|YP_008376316.1| - 5e-07 29.6 0.0 5.7e-07 29.4 0.0 1.2 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain HVSL PF09749.4 gi|529077313|ref|YP_008376316.1| - 0.041 12.8 0.0 0.047 12.6 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised conserved protein NTP_transf_2 PF01909.18 gi|529077314|ref|YP_008376317.1| - 5.6e-08 33.0 0.0 8.1e-08 32.4 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain Nuc-transf PF10127.4 gi|529077314|ref|YP_008376317.1| - 0.072 12.4 1.6 0.096 12.0 0.2 1.7 2 1 0 2 2 2 0 Predicted nucleotidyltransferase TPR_11 PF13414.1 gi|529077315|ref|YP_008376318.1| - 8e-26 89.4 20.9 2.2e-13 49.6 2.6 3.2 1 1 1 3 3 3 3 TPR repeat TPR_1 PF00515.23 gi|529077315|ref|YP_008376318.1| - 3.7e-23 80.1 6.3 3.8e-07 29.4 0.1 4.7 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_2 PF07719.12 gi|529077315|ref|YP_008376318.1| - 7.7e-21 72.2 16.8 3.8e-05 23.2 0.4 5.2 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_16 PF13432.1 gi|529077315|ref|YP_008376318.1| - 1.6e-19 69.9 18.6 1.7e-10 41.3 1.3 3.2 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_12 PF13424.1 gi|529077315|ref|YP_008376318.1| - 1.4e-15 56.9 17.0 1.1e-07 31.6 3.1 3.6 1 1 1 3 3 3 3 Tetratricopeptide repeat TPR_14 PF13428.1 gi|529077315|ref|YP_008376318.1| - 4e-15 54.9 20.6 2.2e-05 24.6 0.2 5.2 1 1 4 5 5 5 4 Tetratricopeptide repeat TPR_8 PF13181.1 gi|529077315|ref|YP_008376318.1| - 8e-14 50.3 2.2 0.0019 17.8 0.1 4.9 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_17 PF13431.1 gi|529077315|ref|YP_008376318.1| - 1.4e-13 49.8 2.5 0.00012 22.0 0.0 4.5 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_9 PF13371.1 gi|529077315|ref|YP_008376318.1| - 1e-10 41.2 11.4 2.7e-05 23.9 0.5 3.3 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_7 PF13176.1 gi|529077315|ref|YP_008376318.1| - 3.3e-09 35.8 15.5 0.0084 15.8 0.2 5.1 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_19 PF14559.1 gi|529077315|ref|YP_008376318.1| - 6.9e-09 35.9 4.4 8.1e-06 26.0 0.3 3.5 2 1 2 4 4 4 2 Tetratricopeptide repeat TPR_6 PF13174.1 gi|529077315|ref|YP_008376318.1| - 1.9e-07 31.0 9.6 0.49 10.9 0.1 4.9 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_10 PF13374.1 gi|529077315|ref|YP_008376318.1| - 1.5e-05 24.7 23.9 0.0023 17.7 0.6 4.5 4 0 0 4 4 4 3 Tetratricopeptide repeat Apc3 PF12895.2 gi|529077315|ref|YP_008376318.1| - 0.00013 22.0 0.8 0.16 12.1 0.0 2.6 1 1 2 3 3 3 3 Anaphase-promoting complex, cyclosome, subunit 3 YfiO PF13525.1 gi|529077315|ref|YP_008376318.1| - 0.00038 19.9 0.6 0.00063 19.2 0.2 1.6 1 1 0 1 1 1 1 Outer membrane lipoprotein TPR_4 PF07721.9 gi|529077315|ref|YP_008376318.1| - 0.0012 19.0 1.1 0.0012 19.0 0.8 5.3 5 0 0 5 5 5 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|529077315|ref|YP_008376318.1| - 0.0044 16.8 0.4 14 5.6 0.0 3.5 3 0 0 3 3 3 0 Fis1 C-terminal tetratricopeptide repeat TPR_21 PF09976.4 gi|529077315|ref|YP_008376318.1| - 0.015 15.1 0.8 0.015 15.1 0.6 2.5 2 1 1 3 3 3 0 Tetratricopeptide repeat TPR_18 PF13512.1 gi|529077315|ref|YP_008376318.1| - 0.017 15.1 0.1 0.034 14.1 0.0 1.6 1 1 0 1 1 1 0 Tetratricopeptide repeat NARP1 PF12569.3 gi|529077315|ref|YP_008376318.1| - 0.031 13.0 3.4 3.3 6.3 0.0 2.7 1 1 2 3 3 3 0 NMDA receptor-regulated protein 1 Apc5 PF12862.2 gi|529077315|ref|YP_008376318.1| - 0.038 13.8 9.4 1.4 8.7 0.9 3.9 1 1 2 3 3 3 0 Anaphase-promoting complex subunit 5 FAT PF02259.18 gi|529077315|ref|YP_008376318.1| - 0.04 12.9 0.1 0.52 9.2 0.1 2.1 1 1 0 1 1 1 0 FAT domain Acetyltransf_11 PF13720.1 gi|529077315|ref|YP_008376318.1| - 0.32 11.2 3.4 0.26 11.5 0.3 2.2 2 0 0 2 2 2 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Coatomer_E PF04733.9 gi|529077315|ref|YP_008376318.1| - 1.8 7.6 6.7 1.5 7.9 0.4 2.2 1 1 1 2 2 2 0 Coatomer epsilon subunit DUF349 PF03993.7 gi|529077315|ref|YP_008376318.1| - 6.1 7.0 16.2 4.4 7.5 3.0 2.5 2 0 0 2 2 2 0 Domain of Unknown Function (DUF349) DUF424 PF04242.8 gi|529077316|ref|YP_008376319.1| - 4.5e-29 100.3 0.0 5.1e-29 100.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) Lipase_GDSL_3 PF14606.1 gi|529077317|ref|YP_008376320.1| - 1.5e-24 86.7 0.0 1.8e-24 86.4 0.0 1.1 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL_2 PF13472.1 gi|529077317|ref|YP_008376320.1| - 1.2e-11 45.0 0.4 1.9e-11 44.4 0.3 1.3 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family B12-binding PF02310.14 gi|529077317|ref|YP_008376320.1| - 0.037 13.8 0.1 0.063 13.1 0.1 1.4 1 0 0 1 1 1 0 B12 binding domain TrmB PF01978.14 gi|529077319|ref|YP_008376322.1| - 3.6e-07 29.7 0.0 1e-06 28.3 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|529077319|ref|YP_008376322.1| - 6.6e-05 22.6 0.0 0.00019 21.1 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|529077319|ref|YP_008376322.1| - 0.0013 18.2 0.0 0.0028 17.1 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|529077319|ref|YP_008376322.1| - 0.0031 17.7 0.0 0.0069 16.6 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|529077319|ref|YP_008376322.1| - 0.011 15.3 0.0 0.04 13.5 0.0 1.9 2 0 0 2 2 2 0 MarR family HTH_24 PF13412.1 gi|529077319|ref|YP_008376322.1| - 0.015 14.7 0.0 0.053 12.9 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|529077319|ref|YP_008376322.1| - 0.027 14.1 0.0 0.051 13.2 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|529077319|ref|YP_008376322.1| - 0.034 13.8 0.0 0.064 12.9 0.0 1.5 1 0 0 1 1 1 0 MarR family PadR PF03551.9 gi|529077319|ref|YP_008376322.1| - 0.046 13.5 0.0 0.083 12.6 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family DUF2250 PF10007.4 gi|529077319|ref|YP_008376322.1| - 0.052 13.4 0.0 0.12 12.2 0.0 1.6 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) Peptidase_M48 PF01435.13 gi|529077320|ref|YP_008376323.1| - 6e-42 143.7 0.0 1.1e-41 142.8 0.0 1.4 1 1 1 2 2 2 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|529077320|ref|YP_008376323.1| - 5.5e-09 35.4 0.1 2.2e-07 30.1 0.0 2.1 2 0 0 2 2 2 1 BlaR1 peptidase M56 IncA PF04156.9 gi|529077320|ref|YP_008376323.1| - 0.00025 20.6 0.5 0.00025 20.6 0.3 2.5 2 1 0 2 2 2 1 IncA protein NAF PF03822.9 gi|529077320|ref|YP_008376323.1| - 0.089 12.5 0.1 0.2 11.3 0.1 1.6 1 0 0 1 1 1 0 NAF domain Peptidase_MA_2 PF13485.1 gi|529077320|ref|YP_008376323.1| - 0.1 12.6 0.0 0.21 11.6 0.0 1.5 1 0 0 1 1 1 0 Peptidase MA superfamily Tic20 PF09685.5 gi|529077320|ref|YP_008376323.1| - 0.42 10.6 6.8 1.2 9.1 0.2 2.2 2 0 0 2 2 2 0 Tic20-like protein NMD3 PF04981.8 gi|529077321|ref|YP_008376324.1| - 7.4e-69 231.4 0.0 9.1e-69 231.1 0.0 1.1 1 0 0 1 1 1 1 NMD3 family FYVE PF01363.16 gi|529077321|ref|YP_008376324.1| - 0.0011 18.8 0.8 0.067 13.0 0.3 2.2 2 0 0 2 2 2 1 FYVE zinc finger zinc_ribbon_2 PF13240.1 gi|529077321|ref|YP_008376324.1| - 0.0012 18.2 2.5 1.3 8.5 0.1 3.3 3 0 0 3 3 3 2 zinc-ribbon domain DZR PF12773.2 gi|529077321|ref|YP_008376324.1| - 0.0061 16.3 6.0 0.44 10.4 3.0 3.1 2 1 1 3 3 3 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|529077321|ref|YP_008376324.1| - 0.013 14.7 6.9 0.85 8.9 0.1 3.4 3 0 0 3 3 3 0 zinc-ribbon domain Rpr2 PF04032.11 gi|529077321|ref|YP_008376324.1| - 0.015 15.1 0.0 0.46 10.3 0.0 2.6 3 0 0 3 3 3 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain Nudix_N_2 PF14803.1 gi|529077321|ref|YP_008376324.1| - 0.024 14.3 12.8 2.4 7.9 0.0 3.9 4 0 0 4 4 3 0 Nudix N-terminal zf-NADH-PPase PF09297.6 gi|529077321|ref|YP_008376324.1| - 0.035 13.6 0.5 0.035 13.6 0.3 2.9 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain GFA PF04828.9 gi|529077321|ref|YP_008376324.1| - 0.08 12.9 4.3 6.8 6.7 0.0 3.3 2 1 0 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme zf-TFIIB PF13453.1 gi|529077321|ref|YP_008376324.1| - 2 7.6 7.6 0.91 8.7 1.3 3.1 2 1 0 2 2 2 0 Transcription factor zinc-finger RNA_POL_M_15KD PF02150.11 gi|529077321|ref|YP_008376324.1| - 5.7 6.7 5.5 14 5.4 0.0 3.0 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit Lar_restr_allev PF14354.1 gi|529077321|ref|YP_008376324.1| - 7 7.0 7.2 98 3.3 3.4 3.1 2 1 0 2 2 2 0 Restriction alleviation protein Lar Met_10 PF02475.11 gi|529077322|ref|YP_008376325.1| - 3.8e-54 183.3 0.0 5.7e-54 182.7 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_18 PF12847.2 gi|529077322|ref|YP_008376325.1| - 1e-11 45.3 0.0 2.1e-11 44.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|529077322|ref|YP_008376325.1| - 4.9e-08 33.0 0.1 1.8e-07 31.2 0.1 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|529077322|ref|YP_008376325.1| - 1.3e-07 31.3 0.0 1.9e-07 30.7 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_31 PF13847.1 gi|529077322|ref|YP_008376325.1| - 9.8e-07 28.4 0.0 1.4e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|529077322|ref|YP_008376325.1| - 2.8e-06 26.7 0.0 6.8e-06 25.5 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_23 PF13489.1 gi|529077322|ref|YP_008376325.1| - 2e-05 24.3 0.0 0.00014 21.6 0.0 2.1 2 1 0 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|529077322|ref|YP_008376325.1| - 8e-05 22.0 0.0 0.00016 21.1 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_24 PF13578.1 gi|529077322|ref|YP_008376325.1| - 0.00045 21.0 0.1 0.002 18.9 0.0 2.2 3 0 0 3 3 2 1 Methyltransferase domain RrnaAD PF00398.15 gi|529077322|ref|YP_008376325.1| - 0.0044 16.0 0.0 0.0078 15.2 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PrmA PF06325.8 gi|529077322|ref|YP_008376325.1| - 0.017 14.2 0.0 0.027 13.6 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) tRNA_U5-meth_tr PF05958.6 gi|529077322|ref|YP_008376325.1| - 0.023 13.3 0.0 0.035 12.8 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Methyltransf_21 PF05050.7 gi|529077322|ref|YP_008376325.1| - 0.032 14.1 0.0 0.075 12.9 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase FkbM domain DNA_methylase PF00145.12 gi|529077322|ref|YP_008376325.1| - 0.045 12.8 0.0 0.07 12.2 0.0 1.2 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase ADH_zinc_N PF00107.21 gi|529077322|ref|YP_008376325.1| - 0.054 13.0 0.0 0.11 12.0 0.0 1.5 1 0 0 1 1 1 0 Zinc-binding dehydrogenase SAM_MT PF04445.8 gi|529077322|ref|YP_008376325.1| - 0.058 12.5 0.0 0.093 11.8 0.0 1.2 1 0 0 1 1 1 0 Putative SAM-dependent methyltransferase TehB PF03848.9 gi|529077322|ref|YP_008376325.1| - 0.11 11.6 0.0 0.18 10.9 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB PNP_UDP_1 PF01048.15 gi|529077324|ref|YP_008376327.1| - 1.5e-45 155.0 2.1 1.7e-45 154.8 1.4 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Helicase_C_2 PF13307.1 gi|529077325|ref|YP_008376328.1| - 1.1e-20 74.2 0.0 1.6e-20 73.7 0.0 1.3 1 0 0 1 1 1 1 Helicase C-terminal domain ResIII PF04851.10 gi|529077325|ref|YP_008376328.1| - 7.7e-06 25.8 0.0 0.0021 17.8 0.0 2.2 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit DEAD_2 PF06733.10 gi|529077325|ref|YP_008376328.1| - 1.2e-05 24.8 0.0 1.8e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 DEAD_2 AAA_19 PF13245.1 gi|529077325|ref|YP_008376328.1| - 2.1e-05 24.2 0.2 5.5e-05 22.8 0.1 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_30 PF13604.1 gi|529077325|ref|YP_008376328.1| - 0.00022 20.8 0.1 0.3 10.6 0.0 2.2 2 0 0 2 2 2 2 AAA domain DEAD PF00270.24 gi|529077325|ref|YP_008376328.1| - 0.00032 20.2 0.0 0.13 11.7 0.0 2.3 2 0 0 2 2 2 2 DEAD/DEAH box helicase DXP_redisom_C PF08436.7 gi|529077325|ref|YP_008376328.1| - 0.011 15.5 0.0 0.024 14.5 0.0 1.5 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal AAA_16 PF13191.1 gi|529077325|ref|YP_008376328.1| - 0.012 15.6 0.0 0.04 13.8 0.0 1.9 1 0 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.1 gi|529077325|ref|YP_008376328.1| - 0.014 15.5 0.0 0.062 13.4 0.0 2.0 1 1 0 1 1 1 0 AAA domain PhoH PF02562.11 gi|529077325|ref|YP_008376328.1| - 0.044 13.0 0.0 0.092 11.9 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_10 PF12846.2 gi|529077325|ref|YP_008376328.1| - 0.079 12.3 0.0 11 5.3 0.0 2.4 2 0 0 2 2 2 0 AAA-like domain CxxCxxCC PF03692.10 gi|529077326|ref|YP_008376329.1| - 8.4e-06 26.1 3.7 0.00012 22.4 2.6 2.2 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain YL1 PF05764.8 gi|529077327|ref|YP_008376330.1| - 9.1 5.8 8.8 10 5.6 6.1 1.0 1 0 0 1 1 1 0 YL1 nuclear protein adh_short PF00106.20 gi|529077328|ref|YP_008376331.1| - 9.4e-41 139.5 3.3 1.3e-40 139.0 2.3 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|529077328|ref|YP_008376331.1| - 8.1e-30 104.3 0.1 1e-29 104.0 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|529077328|ref|YP_008376331.1| - 3.3e-22 79.0 1.0 4.7e-22 78.5 0.7 1.2 1 0 0 1 1 1 1 KR domain HHH_5 PF14520.1 gi|529077328|ref|YP_008376331.1| - 0.0076 16.4 0.0 0.055 13.6 0.0 2.5 2 1 0 2 2 2 1 Helix-hairpin-helix domain Epimerase PF01370.16 gi|529077328|ref|YP_008376331.1| - 0.011 15.2 0.3 0.019 14.3 0.1 1.6 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family Eno-Rase_NADH_b PF12242.3 gi|529077328|ref|YP_008376331.1| - 0.061 13.1 0.0 0.14 11.9 0.0 1.6 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NAD_binding_10 PF13460.1 gi|529077328|ref|YP_008376331.1| - 0.11 12.5 3.2 0.15 12.0 2.2 1.4 1 1 0 1 1 1 0 NADH(P)-binding 3HCDH_N PF02737.13 gi|529077328|ref|YP_008376331.1| - 0.13 11.8 1.4 0.26 10.9 0.3 1.9 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MutS_V PF00488.16 gi|529077329|ref|YP_008376332.1| - 6.7e-10 38.7 0.0 1.2e-09 37.9 0.0 1.3 1 0 0 1 1 1 1 MutS domain V HHH_5 PF14520.1 gi|529077329|ref|YP_008376332.1| - 7.7e-06 25.9 2.6 6.3e-05 23.0 1.8 2.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.18 gi|529077329|ref|YP_008376332.1| - 0.00031 20.2 1.6 0.0017 17.9 0.1 2.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif IMS_HHH PF11798.3 gi|529077329|ref|YP_008376332.1| - 0.1 12.6 0.0 0.46 10.6 0.0 2.2 2 0 0 2 2 2 0 IMS family HHH motif DUF2892 PF11127.3 gi|529077331|ref|YP_008376334.1| - 7.8e-14 51.2 7.2 1.8e-13 50.1 5.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF2892) YtpI PF14007.1 gi|529077331|ref|YP_008376334.1| - 0.047 13.6 3.0 0.057 13.3 2.1 1.1 1 0 0 1 1 1 0 YtpI-like protein DUF1449 PF07290.6 gi|529077331|ref|YP_008376334.1| - 0.094 12.0 0.5 0.1 11.9 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1449) DUF202 PF02656.10 gi|529077331|ref|YP_008376334.1| - 0.73 10.0 6.5 2.7 8.2 4.7 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF202) BphX PF06139.7 gi|529077331|ref|YP_008376334.1| - 0.89 9.1 4.3 3.1 7.3 3.0 1.8 1 1 0 1 1 1 0 BphX-like SepZ PF06066.6 gi|529077331|ref|YP_008376334.1| - 2.5 8.1 5.8 22 5.1 4.0 2.1 1 1 0 1 1 1 0 SepZ IncA PF04156.9 gi|529077331|ref|YP_008376334.1| - 7.4 6.1 11.5 8.2 5.9 8.0 1.1 1 0 0 1 1 1 0 IncA protein PAS_4 PF08448.5 gi|529077332|ref|YP_008376335.1| - 7.1e-45 151.5 11.7 1.1e-18 67.2 0.1 4.0 4 0 0 4 4 4 3 PAS fold PAS_9 PF13426.1 gi|529077332|ref|YP_008376335.1| - 7.9e-45 151.5 0.3 9.6e-16 58.0 0.0 3.4 3 0 0 3 3 3 3 PAS domain PAS PF00989.19 gi|529077332|ref|YP_008376335.1| - 4.5e-27 94.0 0.2 4.3e-09 36.1 0.0 3.7 3 1 0 3 3 3 3 PAS fold HATPase_c PF02518.21 gi|529077332|ref|YP_008376335.1| - 2.5e-21 75.4 0.0 6.1e-21 74.2 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|529077332|ref|YP_008376335.1| - 9.2e-18 63.4 0.5 6.5e-07 28.9 0.0 3.7 3 0 0 3 3 3 3 PAS domain PAS_3 PF08447.6 gi|529077332|ref|YP_008376335.1| - 1.5e-11 44.1 0.1 5.9e-05 23.0 0.0 3.9 4 0 0 4 4 4 3 PAS fold HisKA PF00512.20 gi|529077332|ref|YP_008376335.1| - 1.7e-10 40.7 9.3 2.7e-09 36.8 0.6 4.1 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.2 gi|529077332|ref|YP_008376335.1| - 0.00035 20.5 4.5 0.18 11.8 0.0 4.7 4 3 0 4 4 4 1 PAS fold HATPase_c_3 PF13589.1 gi|529077332|ref|YP_008376335.1| - 0.0059 16.2 0.0 0.014 15.0 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.1 gi|529077332|ref|YP_008376335.1| - 0.0061 16.8 0.0 0.039 14.2 0.0 2.4 3 0 0 3 3 3 1 PAS domain DUF2762 PF10960.3 gi|529077332|ref|YP_008376335.1| - 0.63 9.7 2.2 10 5.9 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF2762) Bac_luciferase PF00296.15 gi|529077333|ref|YP_008376336.1| - 1.1e-31 110.1 7.6 1.3e-31 109.8 5.3 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase Asn_synthase PF00733.16 gi|529077334|ref|YP_008376337.1| - 4.3e-10 39.5 0.3 8.1e-10 38.6 0.2 1.4 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.11 gi|529077334|ref|YP_008376337.1| - 9.5e-10 37.5 0.1 3.7e-06 25.7 0.1 2.3 2 0 0 2 2 2 2 tRNA methyl transferase NAD_synthase PF02540.12 gi|529077334|ref|YP_008376337.1| - 8.2e-09 34.7 0.0 1.8e-08 33.5 0.0 1.6 2 0 0 2 2 2 1 NAD synthase QueC PF06508.8 gi|529077334|ref|YP_008376337.1| - 8.3e-06 25.2 0.0 4.3e-05 22.8 0.0 2.0 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.15 gi|529077334|ref|YP_008376337.1| - 0.00021 20.8 0.2 0.0023 17.4 0.1 2.3 1 1 1 2 2 2 1 PP-loop family DUF208 PF02677.9 gi|529077334|ref|YP_008376337.1| - 0.0023 17.7 0.4 0.0067 16.2 0.0 1.9 2 1 0 2 2 2 1 Uncharacterized BCR, COG1636 Arginosuc_synth PF00764.14 gi|529077334|ref|YP_008376337.1| - 0.0024 16.9 0.1 0.0047 16.0 0.0 1.5 2 0 0 2 2 2 1 Arginosuccinate synthase PAPS_reduct PF01507.14 gi|529077334|ref|YP_008376337.1| - 0.02 14.7 0.0 0.043 13.6 0.0 1.5 1 1 1 2 2 2 0 Phosphoadenosine phosphosulfate reductase family DUF1205 PF06722.7 gi|529077334|ref|YP_008376337.1| - 0.085 13.1 0.1 0.82 9.9 0.0 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF1205) TatC PF00902.13 gi|529077335|ref|YP_008376338.1| - 4.1e-34 117.8 16.7 4.1e-34 117.8 11.6 2.0 2 0 0 2 2 2 1 Sec-independent protein translocase protein (TatC) zf-DHHC PF01529.15 gi|529077335|ref|YP_008376338.1| - 0.62 9.4 3.0 1.1 8.6 2.1 1.4 1 0 0 1 1 1 0 DHHC palmitoyltransferase TatC PF00902.13 gi|529077336|ref|YP_008376339.1| - 1.6e-65 220.5 24.4 1.3e-33 116.2 7.6 2.3 2 0 0 2 2 2 2 Sec-independent protein translocase protein (TatC) Flavodoxin_5 PF12724.2 gi|529077337|ref|YP_008376340.1| - 2.1e-37 128.2 0.0 2.7e-37 127.9 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.20 gi|529077337|ref|YP_008376340.1| - 3.2e-05 23.9 0.0 6.1e-05 23.0 0.0 1.6 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_3 PF12641.2 gi|529077337|ref|YP_008376340.1| - 0.0021 17.4 0.0 0.007 15.8 0.0 1.8 2 0 0 2 2 2 1 Flavodoxin domain RHH_1 PF01402.16 gi|529077338|ref|YP_008376341.1| - 0.0011 18.6 1.4 0.014 15.2 0.1 2.1 1 1 1 2 2 2 2 Ribbon-helix-helix protein, copG family DUF165 PF02592.10 gi|529077339|ref|YP_008376342.1| - 1.5e-41 141.9 4.9 2.4e-41 141.3 3.4 1.3 1 0 0 1 1 1 1 Uncharacterized ACR, YhhQ family COG1738 HTH_20 PF12840.2 gi|529077340|ref|YP_008376343.1| - 1.8e-13 50.0 0.1 2.7e-13 49.5 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|529077340|ref|YP_008376343.1| - 7.5e-07 28.7 0.0 1.4e-06 27.8 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.1 gi|529077340|ref|YP_008376343.1| - 8.5e-07 28.9 0.0 1.2e-06 28.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|529077340|ref|YP_008376343.1| - 8e-06 25.1 0.0 1.3e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|529077340|ref|YP_008376343.1| - 1.5e-05 24.5 0.0 2.3e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|529077340|ref|YP_008376343.1| - 2.5e-05 24.5 0.0 3.7e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|529077340|ref|YP_008376343.1| - 3.7e-05 23.3 0.0 6.8e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|529077340|ref|YP_008376343.1| - 5.5e-05 22.7 0.0 8.3e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.12 gi|529077340|ref|YP_008376343.1| - 0.00013 21.3 0.0 0.00016 21.0 0.0 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit B-block_TFIIIC PF04182.7 gi|529077340|ref|YP_008376343.1| - 0.0022 17.8 0.0 0.0037 17.0 0.0 1.3 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_10 PF04967.7 gi|529077343|ref|YP_008376346.1| - 4e-15 55.1 0.0 6.9e-15 54.3 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|529077343|ref|YP_008376346.1| - 0.0007 18.8 0.0 0.0013 18.0 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.7 gi|529077343|ref|YP_008376346.1| - 0.0011 18.3 0.1 0.0021 17.5 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_20 PF12840.2 gi|529077343|ref|YP_008376346.1| - 0.0016 18.2 0.0 0.0034 17.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|529077343|ref|YP_008376346.1| - 0.0053 16.1 0.0 0.0086 15.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|529077343|ref|YP_008376346.1| - 0.0065 15.9 0.3 0.016 14.7 0.2 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|529077343|ref|YP_008376346.1| - 0.02 14.5 0.0 0.037 13.7 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_psq PF05225.11 gi|529077343|ref|YP_008376346.1| - 0.035 13.6 0.0 0.078 12.5 0.0 1.6 1 0 0 1 1 1 0 helix-turn-helix, Psq domain TusA PF01206.12 gi|529077343|ref|YP_008376346.1| - 0.12 12.0 0.0 0.26 10.9 0.0 1.6 1 0 0 1 1 1 0 Sulfurtransferase TusA HNH PF01844.18 gi|529077344|ref|YP_008376347.1| - 3.1e-05 23.7 3.2 0.00025 20.8 2.2 2.1 1 1 0 1 1 1 1 HNH endonuclease Surface_antigen PF11054.3 gi|529077344|ref|YP_008376347.1| - 0.16 11.3 0.0 0.21 10.9 0.0 1.1 1 0 0 1 1 1 0 Sporozoite TA4 surface antigen Plasmid_stabil PF05016.9 gi|529077345|ref|YP_008376348.1| - 4e-06 27.1 0.1 4.9e-06 26.8 0.1 1.1 1 0 0 1 1 1 1 Plasmid stabilisation system protein Lambda_tail_I PF06805.7 gi|529077346|ref|YP_008376349.1| - 0.0023 17.7 0.0 0.0028 17.4 0.0 1.0 1 0 0 1 1 1 1 Bacteriophage lambda tail assembly protein I DUF217 PF02697.9 gi|529077346|ref|YP_008376349.1| - 0.0041 17.3 0.0 0.0046 17.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 Enkurin PF13864.1 gi|529077346|ref|YP_008376349.1| - 0.021 14.9 1.8 0.025 14.7 1.3 1.1 1 0 0 1 1 1 0 Calmodulin-binding VASP_tetra PF08776.6 gi|529077346|ref|YP_008376349.1| - 0.91 8.8 4.5 2.7 7.3 2.4 2.1 1 1 0 1 1 1 0 VASP tetramerisation domain RDD PF06271.7 gi|529077347|ref|YP_008376350.1| - 7.3e-17 61.5 2.4 8.8e-17 61.2 1.7 1.1 1 0 0 1 1 1 1 RDD family MFS_1 PF07690.11 gi|529077348|ref|YP_008376351.1| - 4.9e-28 97.8 60.5 1.2e-20 73.5 20.5 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Glyco_transf_36 PF06165.6 gi|529077350|ref|YP_008376353.1| - 0.00054 19.7 0.0 0.0015 18.3 0.0 1.7 2 0 0 2 2 2 1 Glycosyltransferase family 36 ANT PF03374.9 gi|529077350|ref|YP_008376353.1| - 0.07 13.1 0.1 0.18 11.9 0.1 1.6 1 0 0 1 1 1 0 Phage antirepressor protein KilAC domain FUSC PF04632.7 gi|529077350|ref|YP_008376353.1| - 0.57 8.5 0.4 0.86 7.9 0.3 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family PqqD PF05402.7 gi|529077350|ref|YP_008376353.1| - 1.1 9.3 4.7 0.85 9.6 0.3 3.0 3 0 0 3 3 3 0 Coenzyme PQQ synthesis protein D (PqqD) Glyco_hydro_3 PF00933.16 gi|529077351|ref|YP_008376354.1| - 4.5e-84 281.9 0.0 6.4e-84 281.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.17 gi|529077351|ref|YP_008376354.1| - 4.3e-51 173.6 0.0 6.9e-51 172.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.1 gi|529077351|ref|YP_008376354.1| - 6.4e-24 83.6 0.6 1.8e-23 82.2 0.1 2.0 2 0 0 2 2 2 1 Fibronectin type III-like domain DUF3859 PF12975.2 gi|529077351|ref|YP_008376354.1| - 0.012 15.3 0.0 0.022 14.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3859) DUF11 PF01345.13 gi|529077351|ref|YP_008376354.1| - 0.014 15.3 0.9 0.23 11.5 0.1 2.5 2 0 0 2 2 2 0 Domain of unknown function DUF11 CARDB PF07705.6 gi|529077351|ref|YP_008376354.1| - 0.063 13.3 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 CARDB NTP_transferase PF00483.18 gi|529077352|ref|YP_008376355.1| - 2.6e-34 118.6 0.0 3.2e-34 118.3 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|529077352|ref|YP_008376355.1| - 1e-09 38.6 0.0 1.3e-09 38.3 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|529077352|ref|YP_008376355.1| - 0.023 14.2 0.0 0.04 13.4 0.0 1.4 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Spore_YhcN_YlaJ PF09580.5 gi|529077352|ref|YP_008376355.1| - 0.1 12.6 0.1 0.22 11.6 0.1 1.5 1 0 0 1 1 1 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) Hexapep PF00132.19 gi|529077352|ref|YP_008376355.1| - 0.11 12.0 0.0 1.2 8.7 0.0 2.5 2 0 0 2 2 2 0 Bacterial transferase hexapeptide (six repeats) Glycos_transf_1 PF00534.15 gi|529077353|ref|YP_008376356.1| - 9.1e-28 96.8 0.0 2e-27 95.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|529077353|ref|YP_008376356.1| - 3.9e-17 62.6 0.1 1.6e-16 60.6 0.1 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|529077353|ref|YP_008376356.1| - 3.8e-13 49.8 1.1 4.5e-13 49.6 0.1 1.6 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|529077353|ref|YP_008376356.1| - 2e-07 30.8 0.0 3.5e-07 30.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_transf_5 PF08323.6 gi|529077353|ref|YP_008376356.1| - 4e-05 23.2 0.0 0.00028 20.4 0.0 2.2 2 1 0 2 2 2 1 Starch synthase catalytic domain Lsm_C PF14894.1 gi|529077353|ref|YP_008376356.1| - 0.048 13.1 0.1 0.24 10.9 0.0 2.2 2 0 0 2 2 2 0 Lsm C-terminal Regulator_TrmB PF11495.3 gi|529077355|ref|YP_008376358.1| - 7.2e-65 218.2 1.7 9.3e-65 217.8 1.2 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.14 gi|529077355|ref|YP_008376358.1| - 9.9e-18 63.6 0.0 2.1e-17 62.5 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|529077355|ref|YP_008376358.1| - 6.7e-05 22.4 0.1 0.00018 21.0 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.15 gi|529077355|ref|YP_008376358.1| - 0.0001 21.8 0.0 0.00024 20.6 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|529077355|ref|YP_008376358.1| - 0.00063 19.4 0.0 0.0014 18.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain PadR PF03551.9 gi|529077355|ref|YP_008376358.1| - 0.0013 18.4 0.0 0.0037 16.9 0.0 1.8 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family PPE PF00823.14 gi|529077355|ref|YP_008376358.1| - 0.0014 18.4 0.0 0.0026 17.5 0.0 1.4 1 0 0 1 1 1 1 PPE family HTH_24 PF13412.1 gi|529077355|ref|YP_008376358.1| - 0.003 16.8 0.0 0.006 15.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|529077355|ref|YP_008376358.1| - 0.0071 16.4 0.0 0.013 15.5 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator MarR PF01047.17 gi|529077355|ref|YP_008376358.1| - 0.0099 15.5 0.0 0.025 14.2 0.0 1.7 1 0 0 1 1 1 1 MarR family SUKH_5 PF14567.1 gi|529077355|ref|YP_008376358.1| - 0.028 13.8 0.0 0.051 13.0 0.0 1.5 1 0 0 1 1 1 0 SMI1-KNR4 cell-wall HTH_IclR PF09339.5 gi|529077355|ref|YP_008376358.1| - 0.029 13.9 0.0 0.058 12.9 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_34 PF13601.1 gi|529077355|ref|YP_008376358.1| - 0.047 13.7 0.0 0.12 12.4 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF2250 PF10007.4 gi|529077355|ref|YP_008376358.1| - 0.088 12.7 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Fe_dep_repress PF01325.14 gi|529077355|ref|YP_008376358.1| - 0.14 12.1 0.2 0.39 10.6 0.0 1.9 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain ABC_tran PF00005.22 gi|529077357|ref|YP_008376360.1| - 2.7e-35 121.6 0.0 4.3e-35 120.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|529077357|ref|YP_008376360.1| - 1.1e-11 45.2 0.0 7.3e-07 29.4 0.0 2.1 1 1 1 2 2 2 2 AAA domain TOBE PF03459.12 gi|529077357|ref|YP_008376360.1| - 3.6e-07 30.1 0.5 0.024 14.7 0.1 3.8 2 1 0 2 2 2 2 TOBE domain AAA_15 PF13175.1 gi|529077357|ref|YP_008376360.1| - 3.6e-06 26.2 0.0 0.0054 15.8 0.0 2.1 1 1 1 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|529077357|ref|YP_008376360.1| - 1.2e-05 24.6 0.3 0.0002 20.6 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain TOBE_2 PF08402.5 gi|529077357|ref|YP_008376360.1| - 1.9e-05 24.5 2.3 0.0013 18.6 0.3 3.4 1 1 1 2 2 2 2 TOBE domain AAA_16 PF13191.1 gi|529077357|ref|YP_008376360.1| - 0.00065 19.7 0.4 0.0015 18.5 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|529077357|ref|YP_008376360.1| - 0.00081 19.5 1.4 0.01 15.9 1.0 2.2 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|529077357|ref|YP_008376360.1| - 0.0023 17.1 0.0 0.0045 16.1 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|529077357|ref|YP_008376360.1| - 0.0025 17.2 0.0 0.0054 16.2 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|529077357|ref|YP_008376360.1| - 0.0033 18.2 0.1 0.012 16.4 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|529077357|ref|YP_008376360.1| - 0.0097 15.7 0.1 0.024 14.5 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|529077357|ref|YP_008376360.1| - 0.011 15.4 0.0 0.028 14.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Miro PF08477.8 gi|529077357|ref|YP_008376360.1| - 0.013 15.9 0.0 0.073 13.5 0.0 2.2 2 0 0 2 2 2 0 Miro-like protein AAA_25 PF13481.1 gi|529077357|ref|YP_008376360.1| - 0.015 14.7 0.1 0.093 12.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.10 gi|529077357|ref|YP_008376360.1| - 0.019 13.6 0.0 0.025 13.2 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_23 PF13476.1 gi|529077357|ref|YP_008376360.1| - 0.033 14.5 0.0 0.067 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|529077357|ref|YP_008376360.1| - 0.046 13.6 0.0 0.23 11.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|529077357|ref|YP_008376360.1| - 0.048 13.8 0.2 0.16 12.1 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.1 gi|529077357|ref|YP_008376360.1| - 0.059 13.3 0.3 0.14 12.0 0.1 1.8 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|529077357|ref|YP_008376360.1| - 0.088 11.8 0.0 0.22 10.5 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin RNA_helicase PF00910.17 gi|529077357|ref|YP_008376360.1| - 0.11 12.6 0.0 0.27 11.4 0.0 1.6 1 0 0 1 1 1 0 RNA helicase NACHT PF05729.7 gi|529077357|ref|YP_008376360.1| - 0.15 11.6 0.0 0.4 10.3 0.0 1.7 1 0 0 1 1 1 0 NACHT domain AAA_18 PF13238.1 gi|529077357|ref|YP_008376360.1| - 0.17 12.1 0.8 0.58 10.4 0.3 2.3 2 2 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.17 gi|529077358|ref|YP_008376361.1| - 1.6e-12 47.3 19.9 1.6e-12 47.3 13.8 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3270 PF11674.3 gi|529077358|ref|YP_008376361.1| - 0.7 9.9 4.0 4.6 7.3 0.0 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3270) BPD_transp_1 PF00528.17 gi|529077359|ref|YP_008376362.1| - 1.7e-15 57.0 17.1 1.7e-15 57.0 11.8 2.5 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_1 PF01547.20 gi|529077360|ref|YP_008376363.1| - 4.4e-21 75.9 1.1 6.5e-21 75.3 0.8 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|529077360|ref|YP_008376363.1| - 3.2e-17 63.1 3.4 3.2e-17 63.1 2.4 1.4 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein PfkB PF00294.19 gi|529077361|ref|YP_008376364.1| - 1.3e-55 188.7 0.9 1.4e-55 188.5 0.6 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|529077361|ref|YP_008376364.1| - 0.0051 16.0 0.0 0.0079 15.4 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Phosphorylase PF00343.15 gi|529077362|ref|YP_008376365.1| - 5.6e-17 60.9 0.0 1.9e-10 39.2 0.0 2.9 2 1 1 3 3 3 3 Carbohydrate phosphorylase Glyco_transf_5 PF08323.6 gi|529077362|ref|YP_008376365.1| - 1.7e-06 27.7 0.0 4.4e-06 26.3 0.0 1.7 2 0 0 2 2 2 1 Starch synthase catalytic domain Glyco_hydro_77 PF02446.12 gi|529077363|ref|YP_008376366.1| - 4.6e-136 454.2 0.0 5.6e-136 454.0 0.0 1.0 1 0 0 1 1 1 1 4-alpha-glucanotransferase Antitoxin-MazE PF04014.13 gi|529077364|ref|YP_008376367.1| - 1e-05 25.1 0.1 1.4e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE Inhibitor_I53 PF11714.3 gi|529077364|ref|YP_008376367.1| - 0.18 11.7 1.0 0.21 11.5 0.7 1.3 1 0 0 1 1 1 0 Thrombin inhibitor Madanin PIN PF01850.16 gi|529077365|ref|YP_008376368.1| - 2.9e-17 63.1 3.4 3.3e-17 62.9 2.4 1.0 1 0 0 1 1 1 1 PIN domain Alpha-amylase PF00128.19 gi|529077366|ref|YP_008376369.1| - 2.7e-51 174.8 0.1 3e-50 171.4 0.1 2.0 1 1 0 1 1 1 1 Alpha amylase, catalytic domain Glyco_hydro_42C PF08533.5 gi|529077366|ref|YP_008376369.1| - 3.1e-05 23.4 0.1 0.00021 20.7 0.0 2.3 2 0 0 2 2 2 1 Beta-galactosidase C-terminal domain Alpha-amylase_C PF02806.13 gi|529077366|ref|YP_008376369.1| - 0.00049 20.1 0.0 0.051 13.7 0.0 2.7 2 0 0 2 2 2 1 Alpha amylase, C-terminal all-beta domain hDGE_amylase PF14701.1 gi|529077366|ref|YP_008376369.1| - 0.0048 15.8 0.0 0.011 14.6 0.0 1.5 2 0 0 2 2 2 1 glucanotransferase domain of human glycogen debranching enzyme DUF3459 PF11941.3 gi|529077366|ref|YP_008376369.1| - 0.02 14.9 0.0 0.062 13.4 0.0 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF3459) Alpha-amylase PF00128.19 gi|529077367|ref|YP_008376370.1| - 1.2e-44 153.0 0.0 1.7e-44 152.5 0.0 1.2 1 0 0 1 1 1 1 Alpha amylase, catalytic domain Alpha-amylase_C PF02806.13 gi|529077367|ref|YP_008376370.1| - 0.0019 18.3 0.0 0.0068 16.5 0.0 2.0 2 0 0 2 2 2 1 Alpha amylase, C-terminal all-beta domain HTH_29 PF13551.1 gi|529077369|ref|YP_008376372.1| - 4.4e-23 81.5 0.2 5e-23 81.3 0.2 1.0 1 0 0 1 1 1 1 Winged helix-turn helix HTH_32 PF13565.1 gi|529077369|ref|YP_008376372.1| - 3.2e-13 50.2 0.8 4.1e-13 49.9 0.6 1.1 1 0 0 1 1 1 1 Homeodomain-like domain HTH_23 PF13384.1 gi|529077369|ref|YP_008376372.1| - 1.3e-09 37.4 0.1 1.1e-07 31.2 0.0 2.8 2 1 2 4 4 4 1 Homeodomain-like domain HTH_28 PF13518.1 gi|529077369|ref|YP_008376372.1| - 0.00016 21.6 0.0 0.0024 17.8 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|529077369|ref|YP_008376372.1| - 0.065 12.6 0.0 0.13 11.7 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Tnp_Tc3_2 PF01498.13 gi|529077369|ref|YP_008376372.1| - 0.094 12.7 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Transposase DDE_3 PF13358.1 gi|529077370|ref|YP_008376373.1| - 2.9e-18 66.0 0.1 3.8e-18 65.6 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease rve PF00665.21 gi|529077370|ref|YP_008376373.1| - 0.011 15.8 0.0 0.015 15.3 0.0 1.3 1 0 0 1 1 1 0 Integrase core domain VWA_2 PF13519.1 gi|529077371|ref|YP_008376374.1| - 2.7e-29 102.4 2.1 2.7e-29 102.4 1.4 2.4 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA PF00092.23 gi|529077371|ref|YP_008376374.1| - 1.9e-22 79.8 2.4 2e-22 79.7 0.3 2.1 2 0 0 2 2 2 1 von Willebrand factor type A domain DUF2201 PF09967.4 gi|529077371|ref|YP_008376374.1| - 2.9e-05 24.0 0.5 8.6e-05 22.5 0.0 2.0 2 0 0 2 2 2 1 VWA-like domain (DUF2201) VWA_CoxE PF05762.9 gi|529077371|ref|YP_008376374.1| - 0.0015 17.7 0.0 0.0029 16.7 0.0 1.4 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein Reprolysin_3 PF13582.1 gi|529077371|ref|YP_008376374.1| - 0.037 14.5 5.7 0.068 13.7 0.4 3.4 2 0 0 2 2 2 0 Metallo-peptidase family M12B Reprolysin-like Alpha-amylase PF00128.19 gi|529077372|ref|YP_008376375.1| - 1.3e-38 133.1 0.0 7e-37 127.5 0.0 2.2 2 0 0 2 2 2 2 Alpha amylase, catalytic domain CBM_20 PF00686.14 gi|529077372|ref|YP_008376375.1| - 4.2e-16 58.3 0.1 7.9e-16 57.4 0.0 1.4 1 0 0 1 1 1 1 Starch binding domain hDGE_amylase PF14701.1 gi|529077372|ref|YP_008376375.1| - 3.9e-06 26.0 0.0 5.7e-06 25.4 0.0 1.2 1 0 0 1 1 1 1 glucanotransferase domain of human glycogen debranching enzyme Alpha-amylase PF00128.19 gi|529077373|ref|YP_008376376.1| - 2.3e-62 211.2 0.0 4.4e-62 210.2 0.0 1.4 1 1 0 1 1 1 1 Alpha amylase, catalytic domain GHL6 PF14871.1 gi|529077373|ref|YP_008376376.1| - 0.064 13.2 0.0 0.18 11.8 0.0 1.7 1 0 0 1 1 1 0 Hypothetical glycosyl hydrolase 6 Alpha-amylase PF00128.19 gi|529077374|ref|YP_008376377.1| - 1.1e-94 317.3 0.0 1.5e-94 316.9 0.0 1.2 1 0 0 1 1 1 1 Alpha amylase, catalytic domain DUF3459 PF11941.3 gi|529077374|ref|YP_008376377.1| - 0.00086 19.3 0.0 0.0025 17.9 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF3459) hDGE_amylase PF14701.1 gi|529077374|ref|YP_008376377.1| - 0.013 14.4 0.0 0.018 13.9 0.0 1.1 1 0 0 1 1 1 0 glucanotransferase domain of human glycogen debranching enzyme Alpha-amylase_C PF02806.13 gi|529077374|ref|YP_008376377.1| - 0.026 14.6 0.0 0.16 12.1 0.0 2.3 2 0 0 2 2 2 0 Alpha amylase, C-terminal all-beta domain Alpha-amylase PF00128.19 gi|529077375|ref|YP_008376378.1| - 4.8e-102 341.5 1.9 7.9e-102 340.8 1.3 1.3 1 0 0 1 1 1 1 Alpha amylase, catalytic domain DUF3459 PF11941.3 gi|529077375|ref|YP_008376378.1| - 0.0026 17.8 0.0 0.0073 16.3 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF3459) Glyco_hydro_42C PF08533.5 gi|529077375|ref|YP_008376378.1| - 0.0081 15.6 0.0 0.06 12.8 0.0 2.4 2 1 0 2 2 2 1 Beta-galactosidase C-terminal domain hDGE_amylase PF14701.1 gi|529077375|ref|YP_008376378.1| - 0.015 14.2 0.0 0.028 13.3 0.0 1.3 1 0 0 1 1 1 0 glucanotransferase domain of human glycogen debranching enzyme DUF1186 PF06685.6 gi|529077375|ref|YP_008376378.1| - 0.1 11.7 0.2 6.2 5.9 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1186) Cyc-maltodext_C PF10438.4 gi|529077375|ref|YP_008376378.1| - 0.14 12.2 0.0 0.27 11.2 0.0 1.4 1 0 0 1 1 1 0 Cyclo-malto-dextrinase C-terminal domain Regulator_TrmB PF11495.3 gi|529077376|ref|YP_008376379.1| - 9.8e-43 145.7 0.0 1.3e-42 145.3 0.0 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.14 gi|529077376|ref|YP_008376379.1| - 5.4e-15 54.8 0.2 1.7e-14 53.2 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB PLDc_2 PF13091.1 gi|529077376|ref|YP_008376379.1| - 0.00014 21.6 0.0 0.00022 20.9 0.0 1.3 1 0 0 1 1 1 1 PLD-like domain TetR_N PF00440.18 gi|529077376|ref|YP_008376379.1| - 0.0084 15.7 0.0 0.026 14.1 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_20 PF12840.2 gi|529077376|ref|YP_008376379.1| - 0.014 15.1 1.4 0.11 12.3 0.1 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|529077376|ref|YP_008376379.1| - 0.033 13.8 0.7 0.078 12.6 0.1 1.9 2 0 0 2 2 2 0 Homeodomain-like domain Rrf2 PF02082.15 gi|529077376|ref|YP_008376379.1| - 0.034 14.2 0.0 0.075 13.1 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator MarR_2 PF12802.2 gi|529077376|ref|YP_008376379.1| - 0.037 13.6 0.1 0.099 12.3 0.1 1.8 1 0 0 1 1 1 0 MarR family Glyco_hydro_31 PF01055.21 gi|529077377|ref|YP_008376380.1| - 4.2e-91 305.9 12.1 1.2e-90 304.5 8.4 1.7 1 1 0 1 1 1 1 Glycosyl hydrolases family 31 Glyco_hydro_32N PF00251.15 gi|529077378|ref|YP_008376381.1| - 3.5e-78 263.0 0.0 4.8e-78 262.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 32 N-terminal domain Glyco_hydro_32C PF08244.7 gi|529077378|ref|YP_008376381.1| - 1.6e-12 47.6 0.0 3.3e-12 46.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl hydrolases family 32 C terminal Glyco_hydro_43 PF04616.9 gi|529077378|ref|YP_008376381.1| - 0.0013 17.9 1.0 0.44 9.5 0.0 2.6 3 0 0 3 3 3 2 Glycosyl hydrolases family 43 zf-RING_3 PF14369.1 gi|529077379|ref|YP_008376382.1| - 0.18 11.8 4.4 2.6 8.1 1.5 2.4 2 0 0 2 2 2 0 zinc-finger DZR PF12773.2 gi|529077379|ref|YP_008376382.1| - 0.21 11.4 3.9 0.77 9.6 2.7 1.9 1 1 0 1 1 1 0 Double zinc ribbon TerY-C PF15616.1 gi|529077379|ref|YP_008376382.1| - 0.32 10.9 2.3 0.53 10.2 1.6 1.2 1 0 0 1 1 1 0 TerY-C metal binding domain Usp PF00582.21 gi|529077380|ref|YP_008376383.1| - 4e-22 78.9 1.3 5.2e-22 78.5 0.9 1.2 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.19 gi|529077380|ref|YP_008376383.1| - 0.0044 16.3 0.6 0.012 14.8 0.4 1.8 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel GSIII_N PF12437.3 gi|529077380|ref|YP_008376383.1| - 0.061 12.7 0.0 0.075 12.4 0.0 1.2 1 0 0 1 1 1 0 Glutamine synthetase type III N terminal DNA_photolyase PF00875.13 gi|529077380|ref|YP_008376383.1| - 0.095 12.4 0.0 0.12 12.0 0.0 1.1 1 0 0 1 1 1 0 DNA photolyase AAA_16 PF13191.1 gi|529077382|ref|YP_008376385.1| - 3.5e-12 46.6 0.5 4.7e-11 43.0 0.0 2.6 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|529077382|ref|YP_008376385.1| - 4.9e-08 33.1 0.0 8.4e-08 32.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain Cdc6_C PF09079.6 gi|529077382|ref|YP_008376385.1| - 9e-07 28.5 0.1 2.8e-06 26.9 0.1 1.9 1 0 0 1 1 1 1 CDC6, C terminal Arch_ATPase PF01637.13 gi|529077382|ref|YP_008376385.1| - 0.00012 21.8 0.0 0.0002 21.1 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase AAA_33 PF13671.1 gi|529077382|ref|YP_008376385.1| - 0.0002 21.2 0.0 0.00076 19.3 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|529077382|ref|YP_008376385.1| - 0.00023 21.3 0.0 0.00061 20.0 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MarR_2 PF12802.2 gi|529077382|ref|YP_008376385.1| - 0.0016 18.0 0.1 0.0097 15.5 0.0 2.3 1 1 0 1 1 1 1 MarR family AAA_19 PF13245.1 gi|529077382|ref|YP_008376385.1| - 0.0017 18.0 0.0 0.0043 16.7 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain Penicillinase_R PF03965.11 gi|529077382|ref|YP_008376385.1| - 0.0019 18.2 0.0 0.017 15.1 0.0 2.3 3 0 0 3 3 2 1 Penicillinase repressor AAA_11 PF13086.1 gi|529077382|ref|YP_008376385.1| - 0.0073 15.9 0.0 0.015 14.8 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|529077382|ref|YP_008376385.1| - 0.0088 15.9 0.0 0.028 14.3 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|529077382|ref|YP_008376385.1| - 0.013 15.8 0.0 0.041 14.1 0.0 2.1 2 1 0 2 2 1 0 AAA domain AAA_17 PF13207.1 gi|529077382|ref|YP_008376385.1| - 0.013 16.3 0.5 0.05 14.4 0.2 2.3 1 1 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|529077382|ref|YP_008376385.1| - 0.028 13.3 0.0 0.046 12.6 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein NTPase_1 PF03266.10 gi|529077382|ref|YP_008376385.1| - 0.029 14.0 0.0 0.057 13.1 0.0 1.5 1 0 0 1 1 1 0 NTPase IstB_IS21 PF01695.12 gi|529077382|ref|YP_008376385.1| - 0.029 13.7 0.0 7.1 5.9 0.0 2.4 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_28 PF13521.1 gi|529077382|ref|YP_008376385.1| - 0.054 13.4 0.0 0.1 12.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|529077382|ref|YP_008376385.1| - 0.059 13.0 0.0 0.11 12.0 0.0 1.6 1 1 0 1 1 1 0 NACHT domain Mg_chelatase PF01078.16 gi|529077382|ref|YP_008376385.1| - 0.076 12.1 0.0 0.14 11.3 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Viral_helicase1 PF01443.13 gi|529077382|ref|YP_008376385.1| - 0.078 12.4 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Zeta_toxin PF06414.7 gi|529077382|ref|YP_008376385.1| - 0.081 12.0 0.0 0.15 11.1 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin Sigma54_activat PF00158.21 gi|529077382|ref|YP_008376385.1| - 0.09 12.2 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain Rad17 PF03215.10 gi|529077382|ref|YP_008376385.1| - 0.094 11.3 0.0 0.12 11.0 0.0 1.3 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_30 PF13604.1 gi|529077382|ref|YP_008376385.1| - 0.1 12.1 0.4 0.23 11.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain Peptidase_A8 PF01252.13 gi|529077384|ref|YP_008376387.1| - 0.015 14.9 0.3 0.036 13.6 0.2 1.5 1 0 0 1 1 1 0 Signal peptidase (SPase) II DUF4359 PF14271.1 gi|529077384|ref|YP_008376387.1| - 0.02 15.2 0.1 37 4.7 0.0 3.6 3 0 0 3 3 3 0 Domain of unknown function (DUF4359) Cache_3 PF14827.1 gi|529077384|ref|YP_008376387.1| - 0.081 12.8 8.8 0.74 9.7 0.2 3.7 1 1 2 3 3 3 0 Sensory domain of two-component sensor kinase OrfB_Zn_ribbon PF07282.6 gi|529077385|ref|YP_008376388.1| - 1.9e-24 85.0 0.3 3.7e-24 84.1 0.2 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|529077385|ref|YP_008376388.1| - 0.0025 17.2 0.0 0.0039 16.6 0.0 1.2 1 0 0 1 1 1 1 Probable transposase Y1_Tnp PF01797.11 gi|529077386|ref|YP_008376389.1| - 1.1e-36 125.3 0.0 1.2e-36 125.1 0.0 1.0 1 0 0 1 1 1 1 Transposase IS200 like Patched PF02460.13 gi|529077386|ref|YP_008376389.1| - 0.041 11.8 0.0 0.047 11.6 0.0 1.0 1 0 0 1 1 1 0 Patched family SLAC1 PF03595.12 gi|529077387|ref|YP_008376390.1| - 0.018 13.7 0.1 0.02 13.5 0.1 1.0 1 0 0 1 1 1 0 Voltage-dependent anion channel ABC2_membrane_4 PF12730.2 gi|529077387|ref|YP_008376390.1| - 1.1 8.4 5.0 0.4 9.8 1.9 1.4 2 0 0 2 2 2 0 ABC-2 family transporter protein DUF751 PF05421.6 gi|529077387|ref|YP_008376390.1| - 1.4 9.2 5.6 0.73 10.1 0.1 2.8 3 1 0 3 3 3 0 Protein of unknown function (DUF751) HTH_20 PF12840.2 gi|529077388|ref|YP_008376391.1| - 3.9e-05 23.3 0.5 7.2e-05 22.5 0.4 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|529077388|ref|YP_008376391.1| - 0.0039 17.4 0.1 0.0039 17.4 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|529077388|ref|YP_008376391.1| - 0.033 13.8 0.2 0.055 13.1 0.1 1.4 1 0 0 1 1 1 0 HTH domain HTH_15 PF12324.3 gi|529077388|ref|YP_008376391.1| - 0.036 13.7 0.0 0.056 13.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase DUF3826 PF12875.2 gi|529077388|ref|YP_008376391.1| - 0.15 11.7 0.0 0.2 11.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3826) Glycos_transf_2 PF00535.21 gi|529077390|ref|YP_008376393.1| - 0.0016 18.1 0.1 0.002 17.8 0.1 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Xan_ur_permease PF00860.15 gi|529077391|ref|YP_008376394.1| - 1.3e-74 251.0 37.8 1.3e-74 251.0 26.2 1.8 2 1 0 2 2 2 1 Permease family Bap31 PF05529.7 gi|529077391|ref|YP_008376394.1| - 0.007 15.8 0.3 1.9 7.9 0.2 2.4 2 0 0 2 2 2 2 B-cell receptor-associated protein 31-like Polysacc_deac_1 PF01522.16 gi|529077392|ref|YP_008376395.1| - 1.2e-16 60.4 0.0 2.7e-16 59.3 0.0 1.5 1 0 0 1 1 1 1 Polysaccharide deacetylase TAT_signal PF10518.4 gi|529077392|ref|YP_008376395.1| - 0.0066 16.3 0.3 0.0066 16.3 0.2 1.9 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence CBM_48 PF02922.13 gi|529077392|ref|YP_008376395.1| - 0.017 15.1 1.2 0.2 11.7 0.1 2.9 3 0 0 3 3 3 0 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Trypan_PARP PF05887.6 gi|529077392|ref|YP_008376395.1| - 0.019 14.7 18.4 0.045 13.5 12.8 1.6 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) NESP55 PF06390.7 gi|529077392|ref|YP_008376395.1| - 0.15 11.4 15.3 0.24 10.7 10.6 1.3 1 0 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) DHHW PF14286.1 gi|529077392|ref|YP_008376395.1| - 1 8.6 5.8 1.6 7.9 4.0 1.2 1 0 0 1 1 1 0 DHHW protein Polysacc_deac_1 PF01522.16 gi|529077393|ref|YP_008376396.1| - 2.4e-08 33.6 0.0 5.1e-08 32.5 0.0 1.5 1 0 0 1 1 1 1 Polysaccharide deacetylase NESP55 PF06390.7 gi|529077393|ref|YP_008376396.1| - 0.49 9.7 13.6 0.76 9.1 9.4 1.2 1 0 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) Trypan_PARP PF05887.6 gi|529077393|ref|YP_008376396.1| - 1.5 8.6 17.6 2.9 7.6 12.2 1.4 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) Auto_anti-p27 PF06677.7 gi|529077394|ref|YP_008376397.1| - 3.8e-19 68.1 0.5 5.6e-19 67.6 0.4 1.2 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF605 PF04652.11 gi|529077394|ref|YP_008376397.1| - 0.023 14.0 11.6 0.027 13.8 8.0 1.1 1 0 0 1 1 1 0 Vta1 like DZR PF12773.2 gi|529077394|ref|YP_008376397.1| - 0.039 13.7 0.8 0.079 12.7 0.5 1.4 1 0 0 1 1 1 0 Double zinc ribbon DUF3279 PF11682.3 gi|529077394|ref|YP_008376397.1| - 0.046 13.3 0.1 0.1 12.1 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3279) zf-dskA_traR PF01258.12 gi|529077394|ref|YP_008376397.1| - 0.087 12.5 3.5 0.22 11.2 2.4 1.7 1 0 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger Complex1_LYR_1 PF13232.1 gi|529077394|ref|YP_008376397.1| - 0.17 12.1 1.0 5.6 7.2 0.1 2.3 2 0 0 2 2 2 0 Complex1_LYR-like GFA PF04828.9 gi|529077394|ref|YP_008376397.1| - 0.23 11.4 2.0 0.71 9.8 0.3 2.2 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme DUF2116 PF09889.4 gi|529077394|ref|YP_008376397.1| - 3 7.7 5.7 14 5.6 0.6 2.2 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Med3 PF11593.3 gi|529077394|ref|YP_008376397.1| - 5.5 6.1 9.5 6.7 5.8 6.6 1.2 1 0 0 1 1 1 0 Mediator complex subunit 3 fungal Actino_peptide PF14408.1 gi|529077394|ref|YP_008376397.1| - 8.8 6.3 14.4 1.2 9.1 3.6 2.8 2 1 0 2 2 2 0 Ribosomally synthesized peptide in actinomycetes Peripla_BP_4 PF13407.1 gi|529077395|ref|YP_008376398.1| - 2.4e-44 151.6 1.1 3.1e-44 151.2 0.8 1.0 1 0 0 1 1 1 1 Periplasmic binding protein domain YadA_anchor PF03895.10 gi|529077395|ref|YP_008376398.1| - 0.085 12.8 0.2 0.2 11.7 0.2 1.6 1 0 0 1 1 1 0 YadA-like C-terminal region ABC_tran PF00005.22 gi|529077396|ref|YP_008376399.1| - 1.7e-33 115.8 0.0 2.5e-33 115.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|529077396|ref|YP_008376399.1| - 1.2e-13 51.7 0.0 2.1e-05 24.6 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|529077396|ref|YP_008376399.1| - 6.5e-08 32.3 0.2 0.0023 17.4 0.0 2.1 1 1 1 2 2 2 2 AAA-like domain ABC_ATPase PF09818.4 gi|529077396|ref|YP_008376399.1| - 1.1e-07 30.8 0.9 0.01 14.4 0.2 3.0 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_23 PF13476.1 gi|529077396|ref|YP_008376399.1| - 1.9e-06 28.3 0.0 3e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|529077396|ref|YP_008376399.1| - 2e-06 27.2 0.2 0.00011 21.4 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|529077396|ref|YP_008376399.1| - 3.8e-06 26.3 0.0 8.3e-06 25.2 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|529077396|ref|YP_008376399.1| - 9.1e-05 21.7 0.0 0.00014 21.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|529077396|ref|YP_008376399.1| - 0.00047 19.3 0.0 0.01 14.9 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.1 gi|529077396|ref|YP_008376399.1| - 0.00048 20.1 2.7 0.0036 17.2 1.9 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|529077396|ref|YP_008376399.1| - 0.00062 19.2 0.6 0.0055 16.1 0.4 2.1 1 1 0 1 1 1 1 AAA domain Miro PF08477.8 gi|529077396|ref|YP_008376399.1| - 0.00095 19.6 0.0 0.0028 18.1 0.0 1.8 2 0 0 2 2 1 1 Miro-like protein AAA_22 PF13401.1 gi|529077396|ref|YP_008376399.1| - 0.0017 18.4 0.6 0.032 14.3 0.5 2.2 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|529077396|ref|YP_008376399.1| - 0.0029 17.1 0.4 0.012 15.2 0.3 1.9 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|529077396|ref|YP_008376399.1| - 0.003 17.7 0.1 0.33 11.1 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) UPF0079 PF02367.12 gi|529077396|ref|YP_008376399.1| - 0.0033 17.0 0.0 0.0057 16.2 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 MMR_HSR1 PF01926.18 gi|529077396|ref|YP_008376399.1| - 0.0048 16.8 0.1 0.0074 16.2 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase Dynamin_N PF00350.18 gi|529077396|ref|YP_008376399.1| - 0.0064 16.3 0.0 0.011 15.5 0.0 1.4 1 0 0 1 1 1 1 Dynamin family FeoB_N PF02421.13 gi|529077396|ref|YP_008376399.1| - 0.024 13.8 0.0 0.07 12.4 0.0 1.8 1 0 0 1 1 1 0 Ferrous iron transport protein B AAA_33 PF13671.1 gi|529077396|ref|YP_008376399.1| - 0.025 14.4 0.0 0.049 13.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|529077396|ref|YP_008376399.1| - 0.025 13.9 0.2 5.5 6.3 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein CbiA PF01656.18 gi|529077396|ref|YP_008376399.1| - 0.029 13.7 1.0 0.069 12.5 0.0 1.9 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain SbcCD_C PF13558.1 gi|529077396|ref|YP_008376399.1| - 0.053 13.4 0.1 0.18 11.7 0.0 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit FtsK_SpoIIIE PF01580.13 gi|529077396|ref|YP_008376399.1| - 0.064 12.7 0.3 1.1 8.7 0.0 2.2 2 0 0 2 2 2 0 FtsK/SpoIIIE family DUF2813 PF11398.3 gi|529077396|ref|YP_008376399.1| - 0.071 12.1 0.0 0.1 11.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) DUF815 PF05673.8 gi|529077396|ref|YP_008376399.1| - 0.084 11.7 0.0 0.18 10.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_14 PF13173.1 gi|529077396|ref|YP_008376399.1| - 0.099 12.5 0.0 1.4 8.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|529077396|ref|YP_008376399.1| - 0.099 12.8 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 RNA helicase NACHT PF05729.7 gi|529077396|ref|YP_008376399.1| - 0.11 12.1 0.1 0.22 11.1 0.1 1.4 1 0 0 1 1 1 0 NACHT domain MobB PF03205.9 gi|529077396|ref|YP_008376399.1| - 0.12 12.1 0.0 0.27 10.9 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NB-ARC PF00931.17 gi|529077396|ref|YP_008376399.1| - 0.18 10.6 0.0 0.26 10.0 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain BPD_transp_2 PF02653.11 gi|529077397|ref|YP_008376400.1| - 1.8e-51 174.6 42.0 2.6e-51 174.1 29.1 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Tuberculin PF12198.3 gi|529077398|ref|YP_008376401.1| - 0.035 13.9 0.3 0.96 9.3 0.0 2.1 2 0 0 2 2 2 0 Theoretical tuberculin protein MMR_HSR1 PF01926.18 gi|529077399|ref|YP_008376402.1| - 1.5e-16 60.3 0.0 2.3e-16 59.7 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|529077399|ref|YP_008376402.1| - 3.8e-13 48.9 0.0 6.5e-12 45.0 0.0 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|529077399|ref|YP_008376402.1| - 6.9e-08 32.1 0.0 1.8e-05 24.2 0.0 2.2 1 1 0 2 2 2 2 Elongation factor Tu GTP binding domain AAA_18 PF13238.1 gi|529077399|ref|YP_008376402.1| - 0.001 19.4 0.0 0.0019 18.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|529077399|ref|YP_008376402.1| - 0.001 17.9 0.0 1.1 7.9 0.0 2.3 2 0 0 2 2 2 2 ArgK protein Dynamin_N PF00350.18 gi|529077399|ref|YP_008376402.1| - 0.0019 18.0 0.0 0.61 9.8 0.0 2.2 1 1 1 2 2 2 2 Dynamin family MobB PF03205.9 gi|529077399|ref|YP_008376402.1| - 0.0043 16.7 0.0 0.025 14.2 0.0 2.0 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B DUF258 PF03193.11 gi|529077399|ref|YP_008376402.1| - 0.012 14.8 0.1 0.02 14.0 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function, DUF258 TIP49 PF06068.8 gi|529077399|ref|YP_008376402.1| - 0.013 14.2 0.3 0.024 13.3 0.2 1.3 1 0 0 1 1 1 0 TIP49 C-terminus Miro PF08477.8 gi|529077399|ref|YP_008376402.1| - 0.013 15.9 0.0 0.036 14.5 0.0 1.9 1 1 1 2 2 2 0 Miro-like protein AAA_17 PF13207.1 gi|529077399|ref|YP_008376402.1| - 0.014 16.2 0.0 0.034 14.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|529077399|ref|YP_008376402.1| - 0.017 14.6 0.1 3.5 7.0 0.0 2.3 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_25 PF13481.1 gi|529077399|ref|YP_008376402.1| - 0.021 14.2 0.1 0.053 12.9 0.1 1.9 1 1 0 1 1 1 0 AAA domain AIG1 PF04548.11 gi|529077399|ref|YP_008376402.1| - 0.022 13.8 0.0 0.032 13.3 0.0 1.3 1 1 0 1 1 1 0 AIG1 family AAA_10 PF12846.2 gi|529077399|ref|YP_008376402.1| - 0.023 14.1 0.0 0.032 13.6 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_29 PF13555.1 gi|529077399|ref|YP_008376402.1| - 0.031 13.8 0.0 0.058 12.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Ras PF00071.17 gi|529077399|ref|YP_008376402.1| - 0.032 13.6 0.0 0.087 12.2 0.0 1.7 2 0 0 2 2 2 0 Ras family ABC_tran PF00005.22 gi|529077399|ref|YP_008376402.1| - 0.053 13.8 0.0 0.11 12.7 0.0 1.5 1 0 0 1 1 1 0 ABC transporter DUF2862 PF11061.3 gi|529077399|ref|YP_008376402.1| - 0.1 12.2 0.2 0.21 11.3 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2862) SRPRB PF09439.5 gi|529077399|ref|YP_008376402.1| - 0.16 11.2 0.0 0.22 10.7 0.0 1.3 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit RNA_helicase PF00910.17 gi|529077399|ref|YP_008376402.1| - 0.16 12.1 0.0 0.28 11.3 0.0 1.4 1 0 0 1 1 1 0 RNA helicase PfkB PF00294.19 gi|529077400|ref|YP_008376403.1| - 5.6e-38 130.7 2.0 1.3e-37 129.5 1.4 1.5 1 1 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|529077400|ref|YP_008376403.1| - 0.00064 18.9 0.0 0.001 18.2 0.0 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Phage_RpbA PF10789.4 gi|529077400|ref|YP_008376403.1| - 0.16 11.8 0.0 0.3 10.9 0.0 1.4 1 0 0 1 1 1 0 Phage RNA polymerase binding, RpbA DUF457 PF04307.9 gi|529077402|ref|YP_008376405.1| - 0.0026 17.1 7.0 0.004 16.4 4.8 1.2 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF1212 PF06738.7 gi|529077402|ref|YP_008376405.1| - 3.9 6.9 6.1 0.2 11.0 0.2 1.8 3 0 0 3 3 3 0 Protein of unknown function (DUF1212) DUF4131 PF13567.1 gi|529077403|ref|YP_008376406.1| - 0.0019 17.6 0.3 1.9 7.8 0.2 2.4 1 1 0 2 2 2 2 Domain of unknown function (DUF4131) DUF2370 PF10176.4 gi|529077403|ref|YP_008376406.1| - 0.0057 16.0 0.0 0.0066 15.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2370) tRNA_anti-codon PF01336.20 gi|529077403|ref|YP_008376406.1| - 0.091 12.6 0.2 0.13 12.0 0.1 1.3 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain DUF202 PF02656.10 gi|529077403|ref|YP_008376406.1| - 0.092 12.9 1.9 1.5 9.0 1.3 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF202) Rep_fac-A_3 PF08661.6 gi|529077403|ref|YP_008376406.1| - 0.096 12.5 0.1 0.12 12.2 0.1 1.1 1 0 0 1 1 1 0 Replication factor A protein 3 FLgD_tudor PF13861.1 gi|529077403|ref|YP_008376406.1| - 0.11 12.5 0.1 0.2 11.6 0.0 1.4 1 0 0 1 1 1 0 FlgD Tudor-like domain DUF3017 PF11222.3 gi|529077403|ref|YP_008376406.1| - 0.19 11.5 3.3 3.6 7.4 0.3 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3017) FliD_N PF02465.13 gi|529077403|ref|YP_008376406.1| - 0.21 11.9 0.9 2.9 8.3 0.1 2.0 2 0 0 2 2 2 0 Flagellar hook-associated protein 2 N-terminus Methyltrn_RNA_2 PF04013.7 gi|529077404|ref|YP_008376407.1| - 3.3e-60 203.0 0.0 3.6e-60 202.9 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase PIN PF01850.16 gi|529077406|ref|YP_008376409.1| - 1.4e-08 35.0 0.0 2.2e-08 34.4 0.0 1.3 1 1 0 1 1 1 1 PIN domain DUF217 PF02697.9 gi|529077407|ref|YP_008376410.1| - 3.4e-06 27.2 2.4 4.5e-06 26.8 1.7 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 SPT6_acidic PF14632.1 gi|529077407|ref|YP_008376410.1| - 4.2 7.6 11.9 2.6 8.2 6.9 1.6 1 1 1 2 2 2 0 Acidic N-terminal SPT6 Glyco_hydro_10 PF00331.15 gi|529077408|ref|YP_008376411.1| - 4.6e-95 318.3 0.0 5.1e-95 318.1 0.0 1.0 1 0 0 1 1 1 1 Glycosyl hydrolase family 10 Cellulase PF00150.13 gi|529077408|ref|YP_008376411.1| - 0.0013 18.0 1.3 0.1 11.7 0.2 2.5 2 1 1 3 3 3 2 Cellulase (glycosyl hydrolase family 5) Cellulase-like PF12876.2 gi|529077408|ref|YP_008376411.1| - 0.0016 18.8 0.1 0.029 14.8 0.0 2.4 2 0 0 2 2 2 1 Sugar-binding cellulase-like Epimerase PF01370.16 gi|529077410|ref|YP_008376413.1| - 3.6e-40 137.8 0.1 4.2e-40 137.6 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|529077410|ref|YP_008376413.1| - 1.3e-24 86.6 0.1 1.6e-24 86.2 0.1 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|529077410|ref|YP_008376413.1| - 9.3e-20 70.4 0.0 2.7e-19 68.9 0.0 1.7 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|529077410|ref|YP_008376413.1| - 9.1e-15 54.3 0.0 1.1e-13 50.8 0.0 2.3 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|529077410|ref|YP_008376413.1| - 4.8e-13 48.6 0.0 2.7e-09 36.3 0.0 2.3 2 0 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.1 gi|529077410|ref|YP_008376413.1| - 3.4e-07 30.4 0.3 1.5e-06 28.3 0.2 2.0 1 1 0 1 1 1 1 NADH(P)-binding DapB_N PF01113.15 gi|529077410|ref|YP_008376413.1| - 8.3e-05 22.5 0.1 0.00016 21.5 0.1 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus adh_short PF00106.20 gi|529077410|ref|YP_008376413.1| - 0.003 17.5 1.4 0.0083 16.0 1.0 1.7 1 1 0 1 1 1 1 short chain dehydrogenase Semialdhyde_dh PF01118.19 gi|529077410|ref|YP_008376413.1| - 0.0053 17.0 0.0 0.01 16.1 0.0 1.6 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Ldh_1_N PF00056.18 gi|529077410|ref|YP_008376413.1| - 0.007 16.1 0.1 0.013 15.3 0.1 1.4 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain NmrA PF05368.8 gi|529077410|ref|YP_008376413.1| - 0.0077 15.5 0.0 0.034 13.3 0.0 2.0 2 0 0 2 2 2 1 NmrA-like family Saccharop_dh PF03435.13 gi|529077410|ref|YP_008376413.1| - 0.011 14.7 0.1 0.016 14.2 0.1 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase Epimerase_Csub PF13950.1 gi|529077410|ref|YP_008376413.1| - 0.024 14.5 0.0 0.05 13.5 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose 4-epimerase C-term subunit Epimerase PF01370.16 gi|529077411|ref|YP_008376414.1| - 1.2e-54 185.2 0.1 1.4e-54 185.0 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|529077411|ref|YP_008376414.1| - 3.8e-28 97.9 0.0 5.1e-28 97.5 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|529077411|ref|YP_008376414.1| - 6.5e-19 67.9 0.1 7.9e-19 67.6 0.1 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|529077411|ref|YP_008376414.1| - 2.7e-14 52.7 0.0 7.7e-14 51.2 0.0 1.7 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|529077411|ref|YP_008376414.1| - 9.3e-14 51.8 0.4 1.4e-13 51.2 0.3 1.3 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_4 PF07993.7 gi|529077411|ref|YP_008376414.1| - 5.4e-12 45.1 1.2 3.7e-10 39.1 0.8 2.1 1 1 0 1 1 1 1 Male sterility protein adh_short PF00106.20 gi|529077411|ref|YP_008376414.1| - 8e-09 35.6 0.7 2.2e-08 34.1 0.5 1.7 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|529077411|ref|YP_008376414.1| - 1.6e-05 24.6 0.2 1.6e-05 24.6 0.1 1.6 2 0 0 2 2 2 1 KR domain Saccharop_dh PF03435.13 gi|529077411|ref|YP_008376414.1| - 3.7e-05 22.8 0.1 6.4e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NmrA PF05368.8 gi|529077411|ref|YP_008376414.1| - 0.0015 17.8 0.0 0.004 16.4 0.0 1.8 1 1 0 1 1 1 1 NmrA-like family Semialdhyde_dh PF01118.19 gi|529077411|ref|YP_008376414.1| - 0.0098 16.1 0.1 0.031 14.5 0.0 2.0 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain Ldh_1_N PF00056.18 gi|529077411|ref|YP_008376414.1| - 0.041 13.6 0.1 0.067 13.0 0.1 1.3 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain Epimerase PF01370.16 gi|529077412|ref|YP_008376415.1| - 1.1e-20 74.0 0.0 2e-20 73.2 0.0 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family adh_short PF00106.20 gi|529077412|ref|YP_008376415.1| - 3.5e-05 23.7 0.1 7.3e-05 22.7 0.0 1.5 1 1 0 1 1 1 1 short chain dehydrogenase Polysacc_synt_2 PF02719.10 gi|529077412|ref|YP_008376415.1| - 0.00013 20.9 0.1 0.0013 17.7 0.0 2.2 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|529077412|ref|YP_008376415.1| - 0.0014 17.5 0.1 0.53 9.1 0.2 3.0 2 1 0 2 2 2 2 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|529077412|ref|YP_008376415.1| - 0.012 14.3 0.1 0.032 12.9 0.1 1.9 2 1 0 2 2 2 0 3-beta hydroxysteroid dehydrogenase/isomerase family KR PF08659.5 gi|529077412|ref|YP_008376415.1| - 0.015 14.9 0.0 0.023 14.3 0.0 1.3 1 0 0 1 1 1 0 KR domain PemK PF02452.12 gi|529077413|ref|YP_008376416.1| - 0.093 12.9 0.0 0.11 12.6 0.0 1.1 1 0 0 1 1 1 0 PemK-like protein MarR_2 PF12802.2 gi|529077414|ref|YP_008376417.1| - 7e-05 22.4 0.0 0.00012 21.6 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|529077414|ref|YP_008376417.1| - 0.00077 18.9 0.0 0.0011 18.4 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain z-alpha PF02295.12 gi|529077414|ref|YP_008376417.1| - 0.034 13.9 0.0 0.05 13.3 0.0 1.2 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain TFIIE_alpha PF02002.12 gi|529077414|ref|YP_008376417.1| - 0.038 13.4 0.0 0.054 12.9 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_27 PF13463.1 gi|529077414|ref|YP_008376417.1| - 0.054 13.8 0.0 0.08 13.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|529077414|ref|YP_008376417.1| - 0.069 13.0 0.0 0.1 12.5 0.0 1.2 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Arch_ATPase PF01637.13 gi|529077415|ref|YP_008376418.1| - 2.7e-26 92.7 0.0 1.5e-25 90.3 0.0 1.9 1 1 0 1 1 1 1 Archaeal ATPase DUF234 PF03008.9 gi|529077415|ref|YP_008376418.1| - 8.3e-15 54.7 0.0 1.5e-14 53.9 0.0 1.4 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function AAA_14 PF13173.1 gi|529077415|ref|YP_008376418.1| - 8.2e-07 28.9 0.0 1.6e-06 28.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|529077415|ref|YP_008376418.1| - 1.4e-06 28.4 0.0 4.1e-06 26.8 0.0 1.8 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|529077415|ref|YP_008376418.1| - 0.00037 20.6 0.0 0.00073 19.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain Mrr_cat PF04471.7 gi|529077415|ref|YP_008376418.1| - 0.087 12.6 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 Restriction endonuclease DUF234 PF03008.9 gi|529077416|ref|YP_008376419.1| - 3.4e-09 36.7 0.0 5.2e-09 36.1 0.0 1.3 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function PIN PF01850.16 gi|529077417|ref|YP_008376420.1| - 2.2e-09 37.6 0.2 2.5e-09 37.5 0.1 1.3 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|529077417|ref|YP_008376420.1| - 0.16 12.6 0.9 0.33 11.6 0.6 1.7 1 1 0 1 1 1 0 PIN domain Antitoxin-MazE PF04014.13 gi|529077418|ref|YP_008376421.1| - 3.3e-05 23.5 0.3 4.6e-05 23.0 0.2 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE PRiA4_ORF3 PF07929.6 gi|529077419|ref|YP_008376422.1| - 2e-05 24.0 0.0 3.8e-05 23.1 0.0 1.4 2 0 0 2 2 2 1 Plasmid pRiA4b ORF-3-like protein DZR PF12773.2 gi|529077419|ref|YP_008376422.1| - 0.016 15.0 6.8 0.031 14.0 4.7 1.5 1 0 0 1 1 1 0 Double zinc ribbon zf-B_box PF00643.19 gi|529077419|ref|YP_008376422.1| - 0.055 13.3 5.6 0.23 11.3 3.9 1.9 1 1 0 1 1 1 0 B-box zinc finger TF_Zn_Ribbon PF08271.7 gi|529077419|ref|YP_008376422.1| - 3 7.2 6.8 23 4.3 4.9 2.3 1 1 1 2 2 2 0 TFIIB zinc-binding OrfB_IS605 PF01385.14 gi|529077420|ref|YP_008376423.1| - 1.1e-60 204.8 0.0 1.4e-60 204.5 0.0 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|529077420|ref|YP_008376423.1| - 9.8e-19 66.7 0.8 2.2e-18 65.6 0.1 1.9 2 0 0 2 2 2 1 Putative transposase DNA-binding domain Prim_Zn_Ribbon PF08273.7 gi|529077420|ref|YP_008376423.1| - 0.22 11.6 2.9 0.66 10.0 2.0 1.8 1 0 0 1 1 1 0 Zinc-binding domain of primase-helicase HTH_20 PF12840.2 gi|529077422|ref|YP_008376425.1| - 0.00011 21.9 0.2 0.00011 21.9 0.1 2.2 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|529077422|ref|YP_008376425.1| - 0.00026 20.5 0.0 0.00087 18.8 0.0 1.8 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|529077422|ref|YP_008376425.1| - 0.0006 19.4 0.0 0.0012 18.5 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|529077422|ref|YP_008376425.1| - 0.0026 17.8 0.0 0.0051 16.9 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_24 PF13412.1 gi|529077422|ref|YP_008376425.1| - 0.0051 16.1 0.0 0.013 14.9 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding RP-C PF03428.8 gi|529077422|ref|YP_008376425.1| - 0.0086 15.5 0.2 0.0086 15.5 0.1 2.0 2 1 0 2 2 2 1 Replication protein C N-terminal domain FaeA PF04703.7 gi|529077422|ref|YP_008376425.1| - 0.021 14.9 0.0 0.035 14.2 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein HTH_5 PF01022.15 gi|529077422|ref|YP_008376425.1| - 0.035 13.7 0.0 0.058 13.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family LexA_DNA_bind PF01726.11 gi|529077422|ref|YP_008376425.1| - 0.036 13.6 0.0 0.1 12.1 0.0 1.8 1 0 0 1 1 1 0 LexA DNA binding domain HTH_IclR PF09339.5 gi|529077422|ref|YP_008376425.1| - 0.055 13.0 0.5 0.38 10.3 0.0 2.3 2 0 0 2 2 2 0 IclR helix-turn-helix domain FeoC PF09012.5 gi|529077422|ref|YP_008376425.1| - 0.057 13.1 0.0 0.17 11.6 0.0 1.7 2 0 0 2 2 2 0 FeoC like transcriptional regulator HTH_27 PF13463.1 gi|529077422|ref|YP_008376425.1| - 0.061 13.6 0.3 0.22 11.8 0.0 2.0 2 0 0 2 2 2 0 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|529077422|ref|YP_008376425.1| - 0.079 12.6 1.6 0.4 10.3 0.2 2.3 2 0 0 2 2 2 0 MarR family PhaP_Bmeg PF09602.5 gi|529077422|ref|YP_008376425.1| - 0.12 12.1 0.1 0.58 9.9 0.1 1.9 2 0 0 2 2 2 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) HTH_36 PF13730.1 gi|529077422|ref|YP_008376425.1| - 0.12 12.4 0.0 0.32 11.1 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain Ead_Ea22 PF13935.1 gi|529077422|ref|YP_008376425.1| - 1.2 9.4 7.4 1.2 9.4 4.2 1.7 1 1 1 2 2 2 0 Ead/Ea22-like protein DUF433 PF04255.9 gi|529077423|ref|YP_008376426.1| - 1.7e-08 33.7 0.1 2.2e-08 33.3 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF433) DUF4296 PF14129.1 gi|529077423|ref|YP_008376426.1| - 0.015 15.4 0.0 0.017 15.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4296) Glyco_trans_1_2 PF13524.1 gi|529077423|ref|YP_008376426.1| - 0.019 15.2 0.5 0.026 14.7 0.3 1.3 1 0 0 1 1 1 0 Glycosyl transferases group 1 ARGLU PF15346.1 gi|529077424|ref|YP_008376427.1| - 0.023 14.4 0.1 0.037 13.8 0.1 1.4 1 1 0 1 1 1 0 Arginine and glutamate-rich 1 Bombinin PF05298.6 gi|529077424|ref|YP_008376427.1| - 0.31 10.4 2.3 6.7 6.1 0.1 3.0 1 1 3 4 4 4 0 Bombinin Mak16 PF04874.9 gi|529077424|ref|YP_008376427.1| - 0.48 10.5 2.5 14 5.8 0.4 2.6 1 1 1 2 2 2 0 Mak16 protein C-terminal region Sulfakinin PF08257.6 gi|529077424|ref|YP_008376427.1| - 8.6 6.6 12.1 1.2e+02 3.1 0.1 4.5 4 0 0 4 4 4 0 Sulfakinin family OrfB_Zn_ribbon PF07282.6 gi|529077425|ref|YP_008376428.1| - 1e-21 76.3 1.1 2.1e-21 75.3 0.7 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|529077425|ref|YP_008376428.1| - 7.7e-10 38.5 0.0 1.2e-09 37.8 0.0 1.3 1 0 0 1 1 1 1 Probable transposase DZR PF12773.2 gi|529077425|ref|YP_008376428.1| - 0.021 14.6 3.1 0.044 13.6 2.1 1.5 1 0 0 1 1 1 0 Double zinc ribbon zf-NADH-PPase PF09297.6 gi|529077425|ref|YP_008376428.1| - 2.3 7.8 6.7 1 8.9 2.1 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.1 gi|529077425|ref|YP_008376428.1| - 2.5 7.4 7.1 1.9 7.7 2.7 2.2 1 1 1 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|529077425|ref|YP_008376428.1| - 4 7.2 8.7 0.57 9.9 0.2 2.5 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 RHH_1 PF01402.16 gi|529077426|ref|YP_008376429.1| - 0.0012 18.5 0.0 0.004 16.9 0.0 1.9 2 1 0 2 2 2 1 Ribbon-helix-helix protein, copG family DUF3960 PF13142.1 gi|529077426|ref|YP_008376429.1| - 0.036 13.8 0.0 0.056 13.2 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF3960) Plasmid_stabil PF05016.9 gi|529077427|ref|YP_008376430.1| - 5.6e-05 23.4 0.0 7e-05 23.1 0.0 1.1 1 0 0 1 1 1 1 Plasmid stabilisation system protein Gp49 PF05973.9 gi|529077427|ref|YP_008376430.1| - 0.06 13.3 0.0 0.076 13.0 0.0 1.2 1 0 0 1 1 1 0 Phage derived protein Gp49-like (DUF891) RHH_1 PF01402.16 gi|529077428|ref|YP_008376431.1| - 1.6e-07 30.9 0.2 3e-07 30.0 0.2 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family Glycos_transf_1 PF00534.15 gi|529077428|ref|YP_008376431.1| - 1.6e-05 24.4 0.1 5.1e-05 22.7 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 DUF1662 PF07878.6 gi|529077428|ref|YP_008376431.1| - 0.13 12.0 0.2 0.27 10.9 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1662) Plasmid_stabil PF05016.9 gi|529077429|ref|YP_008376432.1| - 9.2e-06 25.9 0.6 1.2e-05 25.5 0.4 1.2 1 0 0 1 1 1 1 Plasmid stabilisation system protein HTH_20 PF12840.2 gi|529077430|ref|YP_008376433.1| - 0.00058 19.6 0.2 0.00092 18.9 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|529077430|ref|YP_008376433.1| - 0.0014 18.2 0.1 0.0022 17.6 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|529077430|ref|YP_008376433.1| - 0.019 14.6 0.1 0.03 14.0 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.1 gi|529077430|ref|YP_008376433.1| - 0.073 13.4 0.0 0.15 12.4 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain TPR_16 PF13432.1 gi|529077430|ref|YP_008376433.1| - 0.11 13.1 0.3 0.44 11.2 0.0 1.9 2 0 0 2 2 2 0 Tetratricopeptide repeat DUF1735 PF08522.5 gi|529077430|ref|YP_008376433.1| - 0.14 12.5 0.0 0.21 11.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1735) DUF1814 PF08843.6 gi|529077432|ref|YP_008376435.1| - 0.0039 17.0 1.9 0.0052 16.6 0.9 1.5 1 1 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF1814) Laminin_G_3 PF13385.1 gi|529077434|ref|YP_008376437.1| - 9.9e-25 87.6 0.0 2.7e-24 86.1 0.0 1.8 1 0 0 1 1 1 1 Concanavalin A-like lectin/glucanases superfamily STT3 PF02516.9 gi|529077434|ref|YP_008376437.1| - 1.1e-10 41.1 20.1 1.6e-10 40.5 13.9 1.2 1 0 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit PMT PF02366.13 gi|529077434|ref|YP_008376437.1| - 0.00044 19.6 4.1 0.00044 19.6 2.8 2.5 2 0 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Sulfatase PF00884.18 gi|529077435|ref|YP_008376438.1| - 3.3e-36 125.0 0.9 4.6e-36 124.5 0.6 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|529077435|ref|YP_008376438.1| - 8.4e-05 22.0 11.6 0.00055 19.3 5.9 3.0 2 1 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.13 gi|529077435|ref|YP_008376438.1| - 0.0041 16.5 0.0 0.0069 15.7 0.0 1.3 1 0 0 1 1 1 1 Metalloenzyme superfamily Sulfatase_C PF14707.1 gi|529077435|ref|YP_008376438.1| - 0.029 14.6 0.2 0.077 13.2 0.1 1.7 1 0 0 1 1 1 0 C-terminal region of aryl-sulfatase Phosphodiest PF01663.17 gi|529077436|ref|YP_008376439.1| - 2.9e-48 165.0 0.0 6e-48 164.0 0.0 1.5 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.13 gi|529077436|ref|YP_008376439.1| - 0.017 14.5 0.0 0.054 12.8 0.0 1.7 2 0 0 2 2 2 0 Metalloenzyme superfamily Sulfatase PF00884.18 gi|529077436|ref|YP_008376439.1| - 0.035 13.2 0.6 0.31 10.1 0.5 2.4 2 1 0 2 2 2 0 Sulfatase UPF0236 PF06782.6 gi|529077437|ref|YP_008376440.1| - 4.1e-07 28.7 0.1 3.2e-05 22.5 0.0 2.2 2 0 0 2 2 2 2 Uncharacterised protein family (UPF0236) Transposase_mut PF00872.13 gi|529077437|ref|YP_008376440.1| - 9.9e-05 21.0 1.5 0.024 13.2 0.1 2.5 2 1 0 2 2 2 2 Transposase, Mutator family O-antigen_lig PF13425.1 gi|529077438|ref|YP_008376441.1| - 3.7e-14 52.8 13.7 3.7e-14 52.8 9.5 3.5 2 1 1 3 3 3 1 O-antigen ligase like membrane protein Wzy_C PF04932.10 gi|529077438|ref|YP_008376441.1| - 3.3e-06 26.9 11.9 3.3e-06 26.9 8.3 3.9 3 2 0 3 3 3 1 O-Antigen ligase Glycos_transf_N PF04413.11 gi|529077439|ref|YP_008376442.1| - 0.17 11.0 0.0 0.29 10.2 0.0 1.3 1 0 0 1 1 1 0 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Sulfatase PF00884.18 gi|529077440|ref|YP_008376443.1| - 3.9e-45 154.3 0.6 5.2e-45 153.9 0.4 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|529077440|ref|YP_008376443.1| - 3.3e-10 39.8 6.4 7.6e-09 35.3 4.4 2.4 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.13 gi|529077440|ref|YP_008376443.1| - 0.015 14.7 0.4 0.026 13.9 0.3 1.5 1 0 0 1 1 1 0 Metalloenzyme superfamily DUF229 PF02995.12 gi|529077440|ref|YP_008376443.1| - 0.021 13.2 0.3 0.041 12.2 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF229) NeuB PF03102.9 gi|529077441|ref|YP_008376444.1| - 3.7e-72 242.3 0.0 4.5e-72 242.0 0.0 1.1 1 0 0 1 1 1 1 NeuB family SAF PF08666.7 gi|529077441|ref|YP_008376444.1| - 2e-10 40.8 0.0 3.9e-10 39.9 0.0 1.5 1 0 0 1 1 1 1 SAF domain SAF_2 PF13144.1 gi|529077441|ref|YP_008376444.1| - 0.0046 16.4 0.1 0.0077 15.7 0.0 1.4 1 0 0 1 1 1 1 SAF-like CTP_transf_3 PF02348.14 gi|529077442|ref|YP_008376445.1| - 1.2e-24 87.1 0.0 6.3e-24 84.8 0.0 2.1 2 0 0 2 2 2 1 Cytidylyltransferase Glyco_tran_28_C PF04101.11 gi|529077442|ref|YP_008376445.1| - 6.5e-06 25.9 0.0 1.2e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Glyco_trans_1_3 PF13528.1 gi|529077442|ref|YP_008376445.1| - 1.2e-05 24.7 0.6 0.21 10.7 0.1 3.0 2 1 1 3 3 3 2 Glycosyl transferase family 1 Epimerase_2 PF02350.14 gi|529077442|ref|YP_008376445.1| - 6.6e-05 21.8 0.1 0.00015 20.6 0.1 1.6 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase NTP_transf_3 PF12804.2 gi|529077442|ref|YP_008376445.1| - 0.0017 18.4 0.0 0.0046 17.0 0.0 1.8 2 0 0 2 2 2 1 MobA-like NTP transferase domain ABC_tran PF00005.22 gi|529077443|ref|YP_008376446.1| - 9.8e-33 113.3 0.0 2.1e-32 112.3 0.0 1.6 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|529077443|ref|YP_008376446.1| - 6.7e-06 25.4 2.5 6.4e-05 22.2 1.8 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|529077443|ref|YP_008376446.1| - 4.6e-05 23.5 0.5 0.0093 15.9 0.0 2.9 2 1 0 2 2 2 1 AAA domain ABC_membrane PF00664.18 gi|529077443|ref|YP_008376446.1| - 6.1e-05 22.5 13.3 8.6e-05 22.0 9.2 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region AAA_17 PF13207.1 gi|529077443|ref|YP_008376446.1| - 0.00051 20.8 0.1 0.0019 19.0 0.1 2.1 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|529077443|ref|YP_008376446.1| - 0.00056 19.1 0.0 0.0011 18.1 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|529077443|ref|YP_008376446.1| - 0.0027 17.1 0.0 0.0053 16.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|529077443|ref|YP_008376446.1| - 0.0081 16.1 0.4 0.031 14.2 0.1 2.2 2 1 0 2 2 2 1 AAA ATPase domain ABC_ATPase PF09818.4 gi|529077443|ref|YP_008376446.1| - 0.011 14.3 0.1 0.033 12.7 0.0 1.7 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_22 PF13401.1 gi|529077443|ref|YP_008376446.1| - 0.018 15.1 0.6 0.55 10.3 0.4 2.6 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|529077443|ref|YP_008376446.1| - 0.02 14.4 0.2 1.6 8.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|529077443|ref|YP_008376446.1| - 0.065 12.6 0.2 0.23 10.8 0.2 1.9 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|529077443|ref|YP_008376446.1| - 0.077 13.1 0.0 0.28 11.3 0.0 2.0 2 0 0 2 2 2 0 RNA helicase AAA_18 PF13238.1 gi|529077443|ref|YP_008376446.1| - 0.086 13.1 0.1 0.36 11.1 0.0 2.3 2 1 0 2 2 1 0 AAA domain AAA_23 PF13476.1 gi|529077443|ref|YP_008376446.1| - 0.14 12.4 2.9 0.64 10.3 2.0 2.2 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|529077444|ref|YP_008376447.1| - 2.6e-15 56.9 3.6 5.6e-15 55.7 0.2 2.7 1 1 1 2 2 2 1 AAA ATPase domain Cdc6_C PF09079.6 gi|529077444|ref|YP_008376447.1| - 3.7e-15 55.4 1.3 9.1e-15 54.1 0.0 2.3 3 0 0 3 3 3 1 CDC6, C terminal AAA_22 PF13401.1 gi|529077444|ref|YP_008376447.1| - 2.5e-11 43.8 0.0 5.2e-11 42.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|529077444|ref|YP_008376447.1| - 4.9e-06 26.7 0.1 1.6e-05 25.0 0.0 2.0 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|529077444|ref|YP_008376447.1| - 3e-05 23.7 0.0 4.9e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 NACHT domain Arch_ATPase PF01637.13 gi|529077444|ref|YP_008376447.1| - 7.3e-05 22.5 0.0 0.00013 21.8 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase Sigma54_activat PF00158.21 gi|529077444|ref|YP_008376447.1| - 0.00086 18.8 0.1 0.003 17.0 0.0 1.9 2 0 0 2 2 2 1 Sigma-54 interaction domain DUF2791 PF10923.3 gi|529077444|ref|YP_008376447.1| - 0.0032 16.1 0.0 0.0055 15.3 0.0 1.3 1 0 0 1 1 1 1 P-loop Domain of unknown function (DUF2791) AAA_2 PF07724.9 gi|529077444|ref|YP_008376447.1| - 0.0038 17.1 0.0 0.0088 15.9 0.0 1.6 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) NB-ARC PF00931.17 gi|529077444|ref|YP_008376447.1| - 0.0052 15.6 0.0 0.0099 14.7 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain KAP_NTPase PF07693.9 gi|529077444|ref|YP_008376447.1| - 0.006 15.6 0.3 1 8.2 0.0 2.3 1 1 1 2 2 2 1 KAP family P-loop domain AAA_30 PF13604.1 gi|529077444|ref|YP_008376447.1| - 0.013 15.0 0.6 0.032 13.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain DUF2075 PF09848.4 gi|529077444|ref|YP_008376447.1| - 0.023 13.6 0.0 0.06 12.3 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_17 PF13207.1 gi|529077444|ref|YP_008376447.1| - 0.029 15.1 2.1 0.18 12.6 1.5 2.3 1 1 0 1 1 1 0 AAA domain PhoH PF02562.11 gi|529077444|ref|YP_008376447.1| - 0.031 13.5 0.2 0.39 9.9 0.0 2.4 3 0 0 3 3 3 0 PhoH-like protein ABC_tran PF00005.22 gi|529077444|ref|YP_008376447.1| - 0.032 14.5 0.0 0.053 13.8 0.0 1.7 1 1 0 1 1 1 0 ABC transporter AAA_32 PF13654.1 gi|529077444|ref|YP_008376447.1| - 0.041 12.5 0.8 0.73 8.4 0.3 2.2 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|529077444|ref|YP_008376447.1| - 0.14 12.3 0.0 0.32 11.1 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_23 PF13476.1 gi|529077444|ref|YP_008376447.1| - 0.46 10.7 1.9 0.65 10.2 0.1 1.9 2 1 0 2 2 2 0 AAA domain Glycos_transf_1 PF00534.15 gi|529077445|ref|YP_008376448.1| - 1.8e-25 89.3 0.0 2.7e-25 88.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|529077445|ref|YP_008376448.1| - 8.2e-23 81.2 3.2 8.2e-23 81.2 2.2 1.8 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|529077445|ref|YP_008376448.1| - 3.7e-20 72.3 0.2 5.2e-20 71.8 0.2 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|529077445|ref|YP_008376448.1| - 3.8e-17 62.7 0.0 1e-16 61.3 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|529077445|ref|YP_008376448.1| - 1e-06 28.6 0.0 1.7e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|529077445|ref|YP_008376448.1| - 0.011 16.0 0.0 0.022 15.0 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glycos_transf_N PF04413.11 gi|529077445|ref|YP_008376448.1| - 0.017 14.3 0.0 0.034 13.3 0.0 1.5 1 0 0 1 1 1 0 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) DUF433 PF04255.9 gi|529077446|ref|YP_008376449.1| - 3.4e-06 26.3 0.2 5.3e-06 25.7 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF433) HTH_IclR PF09339.5 gi|529077448|ref|YP_008376451.1| - 2.9e-09 36.3 0.7 0.00014 21.3 0.1 3.4 3 0 0 3 3 3 2 IclR helix-turn-helix domain TrmB PF01978.14 gi|529077448|ref|YP_008376451.1| - 7.3e-08 32.0 0.0 0.0039 16.8 0.0 2.3 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|529077448|ref|YP_008376451.1| - 8.7e-06 25.4 0.2 0.00075 19.2 0.1 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|529077448|ref|YP_008376451.1| - 2.3e-05 23.9 0.0 0.0094 15.5 0.0 2.2 2 0 0 2 2 2 2 HTH domain HTH_27 PF13463.1 gi|529077448|ref|YP_008376451.1| - 0.00031 21.0 0.1 0.0033 17.7 0.0 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain FUR PF01475.14 gi|529077448|ref|YP_008376451.1| - 0.00042 20.2 0.0 0.0018 18.1 0.0 1.9 2 0 0 2 2 2 1 Ferric uptake regulator family MarR_2 PF12802.2 gi|529077448|ref|YP_008376451.1| - 0.0014 18.2 0.1 0.048 13.3 0.0 2.3 2 0 0 2 2 2 1 MarR family Fe_dep_repress PF01325.14 gi|529077448|ref|YP_008376451.1| - 0.0015 18.3 0.0 1.1 9.3 0.0 2.4 2 0 0 2 2 2 2 Iron dependent repressor, N-terminal DNA binding domain TetR_N PF00440.18 gi|529077448|ref|YP_008376451.1| - 0.0029 17.1 0.3 0.13 11.9 0.1 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family HTH_5 PF01022.15 gi|529077448|ref|YP_008376451.1| - 0.0036 16.9 0.0 0.03 13.9 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|529077448|ref|YP_008376451.1| - 0.0076 15.6 0.0 0.12 11.8 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_17 PF12728.2 gi|529077448|ref|YP_008376451.1| - 0.0095 16.1 0.1 4.1 7.7 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_28 PF13518.1 gi|529077448|ref|YP_008376451.1| - 0.01 15.8 0.0 4.4 7.4 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain Rrf2 PF02082.15 gi|529077448|ref|YP_008376451.1| - 0.013 15.6 0.0 1.2 9.3 0.0 2.2 2 0 0 2 2 2 0 Transcriptional regulator HTH_23 PF13384.1 gi|529077448|ref|YP_008376451.1| - 0.013 15.1 0.0 1.5 8.5 0.0 2.3 2 0 0 2 2 2 0 Homeodomain-like domain HTH_29 PF13551.1 gi|529077448|ref|YP_008376451.1| - 0.015 15.4 0.0 2 8.5 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn helix PadR PF03551.9 gi|529077448|ref|YP_008376451.1| - 0.052 13.3 0.0 0.86 9.4 0.0 2.4 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family MarR PF01047.17 gi|529077448|ref|YP_008376451.1| - 0.055 13.1 0.0 0.36 10.5 0.0 2.1 2 0 0 2 2 2 0 MarR family OrfB_IS605 PF01385.14 gi|529077450|ref|YP_008376453.1| - 5.4e-55 186.2 0.1 6.9e-55 185.9 0.0 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|529077450|ref|YP_008376453.1| - 1e-14 53.9 0.0 1.9e-14 53.0 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain C1_1 PF00130.17 gi|529077450|ref|YP_008376453.1| - 0.13 12.0 0.1 0.32 10.7 0.0 1.6 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn-ribbon_8 PF09723.5 gi|529077450|ref|YP_008376453.1| - 0.14 12.1 0.7 2 8.4 0.0 2.6 2 0 0 2 2 2 0 Zinc ribbon domain PIN PF01850.16 gi|529077451|ref|YP_008376454.1| - 3.4e-08 33.8 0.0 4.5e-08 33.4 0.0 1.1 1 0 0 1 1 1 1 PIN domain DUF217 PF02697.9 gi|529077452|ref|YP_008376455.1| - 0.013 15.7 0.5 0.017 15.3 0.3 1.3 1 1 0 1 1 1 0 Uncharacterized ACR, COG1753 MEF2_binding PF09047.5 gi|529077452|ref|YP_008376455.1| - 0.055 13.1 0.3 0.085 12.5 0.2 1.3 1 0 0 1 1 1 0 MEF2 binding TniQ PF06527.6 gi|529077452|ref|YP_008376455.1| - 0.096 12.8 0.5 0.11 12.7 0.3 1.1 1 0 0 1 1 1 0 TniQ HTH_IclR PF09339.5 gi|529077453|ref|YP_008376456.1| - 0.014 14.9 0.0 0.031 13.8 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_28 PF13518.1 gi|529077453|ref|YP_008376456.1| - 0.043 13.8 0.0 0.38 10.8 0.0 2.3 2 1 1 3 3 3 0 Helix-turn-helix domain TetR_N PF00440.18 gi|529077453|ref|YP_008376456.1| - 0.051 13.2 0.1 0.36 10.4 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family TrmB PF01978.14 gi|529077453|ref|YP_008376456.1| - 0.061 13.0 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB PIN_4 PF13638.1 gi|529077454|ref|YP_008376457.1| - 0.0021 18.1 0.0 0.0059 16.7 0.0 1.6 1 1 0 1 1 1 1 PIN domain RtcB PF01139.12 gi|529077455|ref|YP_008376458.1| - 4.9e-104 348.6 0.0 6e-104 348.3 0.0 1.1 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB Lzipper-MIP1 PF14389.1 gi|529077456|ref|YP_008376459.1| - 0.082 13.0 0.3 0.1 12.6 0.2 1.4 1 1 0 1 1 1 0 Leucine-zipper of ternary complex factor MIP1 MDMPI_N PF11716.3 gi|529077456|ref|YP_008376459.1| - 0.38 11.1 4.4 0.35 11.2 1.9 1.6 1 1 1 2 2 2 0 Mycothiol maleylpyruvate isomerase N-terminal domain Cep57_CLD_2 PF14197.1 gi|529077456|ref|YP_008376459.1| - 0.91 9.5 5.5 1.8 8.5 0.3 2.1 2 0 0 2 2 2 0 Centrosome localisation domain of PPC89 DUF433 PF04255.9 gi|529077457|ref|YP_008376460.1| - 2e-12 46.3 0.3 5.8e-12 44.8 0.1 1.9 3 0 0 3 3 3 1 Protein of unknown function (DUF433) C6_DPF PF10170.4 gi|529077457|ref|YP_008376460.1| - 0.018 15.0 0.0 0.025 14.6 0.0 1.2 1 0 0 1 1 1 0 Cysteine-rich domain Zn-ribbon_8 PF09723.5 gi|529077457|ref|YP_008376460.1| - 0.023 14.6 0.1 6.5 6.7 0.0 2.3 2 0 0 2 2 2 0 Zinc ribbon domain Prok-RING_1 PF14446.1 gi|529077457|ref|YP_008376460.1| - 0.05 13.3 0.3 0.09 12.5 0.2 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zinc_ribbon_2 PF13240.1 gi|529077457|ref|YP_008376460.1| - 0.051 13.0 0.4 0.13 11.7 0.3 1.7 1 1 0 1 1 1 0 zinc-ribbon domain DUF3168 PF11367.3 gi|529077457|ref|YP_008376460.1| - 0.064 13.3 0.1 0.083 13.0 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3168) zf-C4_Topoisom PF01396.14 gi|529077457|ref|YP_008376460.1| - 0.1 12.1 2.1 0.35 10.4 0.2 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Ribosomal_L44 PF00935.14 gi|529077457|ref|YP_008376460.1| - 0.1 12.6 0.4 1.6 8.8 0.1 2.2 2 0 0 2 2 2 0 Ribosomal protein L44 RNA_POL_M_15KD PF02150.11 gi|529077457|ref|YP_008376460.1| - 0.11 12.2 0.3 0.25 11.0 0.2 1.6 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit DUF2387 PF09526.5 gi|529077457|ref|YP_008376460.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) zf-HYPF PF07503.7 gi|529077457|ref|YP_008376460.1| - 0.13 11.7 0.8 2.9 7.3 0.0 2.3 2 0 0 2 2 2 0 HypF finger DZR PF12773.2 gi|529077457|ref|YP_008376460.1| - 0.13 12.1 0.4 0.28 11.0 0.3 1.5 1 1 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|529077457|ref|YP_008376460.1| - 0.85 8.9 5.1 11 5.4 3.6 2.1 1 1 1 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|529077458|ref|YP_008376461.1| - 3e-06 26.8 1.9 0.045 13.4 0.3 2.1 2 0 0 2 2 2 2 Putative transposase DNA-binding domain zinc-ribbons_6 PF07191.7 gi|529077458|ref|YP_008376461.1| - 4.4e-06 26.3 1.3 0.0092 15.7 0.2 2.1 2 0 0 2 2 2 2 zinc-ribbons IBR PF01485.16 gi|529077458|ref|YP_008376461.1| - 2.8e-05 23.9 1.6 0.037 13.9 0.1 2.1 2 0 0 2 2 2 2 IBR domain DZR PF12773.2 gi|529077458|ref|YP_008376461.1| - 0.00013 21.7 5.9 0.036 13.8 4.6 2.7 1 1 0 1 1 1 1 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|529077458|ref|YP_008376461.1| - 0.00015 21.6 11.7 0.0014 18.5 0.3 3.4 1 1 2 4 4 4 1 Zinc ribbon domain zinc_ribbon_5 PF13719.1 gi|529077458|ref|YP_008376461.1| - 0.00042 19.8 8.5 0.11 12.1 0.8 3.7 2 1 1 3 3 3 3 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|529077458|ref|YP_008376461.1| - 0.00062 19.4 7.3 3.9 7.2 1.3 3.8 3 1 0 3 3 3 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|529077458|ref|YP_008376461.1| - 0.0013 18.0 10.3 0.11 11.8 1.9 3.2 3 0 0 3 3 3 1 TFIIB zinc-binding RNHCP PF12647.2 gi|529077458|ref|YP_008376461.1| - 0.003 17.3 6.8 0.032 14.0 4.7 2.4 1 1 0 1 1 1 1 RNHCP domain zf-IS66 PF13005.2 gi|529077458|ref|YP_008376461.1| - 0.0034 17.3 11.5 4.3 7.3 0.0 4.2 2 1 2 4 4 4 0 zinc-finger binding domain of transposase IS66 Trm112p PF03966.11 gi|529077458|ref|YP_008376461.1| - 0.0091 16.3 3.5 0.44 10.9 0.2 2.9 2 2 0 2 2 2 1 Trm112p-like protein zf-trcl PF13451.1 gi|529077458|ref|YP_008376461.1| - 0.013 15.0 8.4 2.3 7.8 0.2 3.7 4 0 0 4 4 4 0 Probable zinc-binding domain zf-C4_Topoisom PF01396.14 gi|529077458|ref|YP_008376461.1| - 0.014 14.8 7.7 0.56 9.7 0.1 3.9 4 0 0 4 4 4 0 Topoisomerase DNA binding C4 zinc finger HypA PF01155.14 gi|529077458|ref|YP_008376461.1| - 0.015 14.9 7.4 1.5 8.4 2.2 2.8 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family Prok-RING_1 PF14446.1 gi|529077458|ref|YP_008376461.1| - 0.027 14.2 9.3 0.098 12.4 1.1 2.7 2 1 0 2 2 2 0 Prokaryotic RING finger family 1 zf-RING_3 PF14369.1 gi|529077458|ref|YP_008376461.1| - 0.031 14.2 14.0 2.6 8.0 4.7 3.6 3 1 1 4 4 4 0 zinc-finger Rep_fac-A_C PF08646.5 gi|529077458|ref|YP_008376461.1| - 0.041 13.5 0.2 2 8.1 0.0 2.0 2 0 0 2 2 2 0 Replication factor-A C terminal domain FYVE PF01363.16 gi|529077458|ref|YP_008376461.1| - 0.077 12.9 1.8 0.43 10.5 1.3 2.2 1 1 0 1 1 1 0 FYVE zinc finger CpXC PF14353.1 gi|529077458|ref|YP_008376461.1| - 0.081 12.8 5.9 5.2 7.0 0.0 3.7 3 1 0 4 4 4 0 CpXC protein zf-C2H2 PF00096.21 gi|529077458|ref|YP_008376461.1| - 0.094 13.0 8.5 4.4 7.8 0.0 3.9 4 0 0 4 4 4 0 Zinc finger, C2H2 type zf-H2C2_2 PF13465.1 gi|529077458|ref|YP_008376461.1| - 0.13 12.6 8.2 10 6.6 0.1 3.8 4 0 0 4 4 4 0 Zinc-finger double domain DUF2318 PF10080.4 gi|529077458|ref|YP_008376461.1| - 0.13 12.0 1.2 5.7 6.7 0.1 2.2 1 1 1 2 2 2 0 Predicted membrane protein (DUF2318) zf-CHY PF05495.7 gi|529077458|ref|YP_008376461.1| - 0.14 12.3 3.1 0.96 9.6 0.1 2.4 2 1 0 2 2 2 0 CHY zinc finger UPF0547 PF10571.4 gi|529077458|ref|YP_008376461.1| - 0.19 11.4 17.8 0.95 9.2 0.2 4.0 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 DUF329 PF03884.9 gi|529077458|ref|YP_008376461.1| - 0.2 11.2 8.4 13 5.4 0.1 3.9 3 1 1 4 4 4 0 Domain of unknown function (DUF329) zf-ISL3 PF14690.1 gi|529077458|ref|YP_008376461.1| - 0.23 11.5 8.4 14 5.7 0.2 4.2 4 1 0 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Elf1 PF05129.8 gi|529077458|ref|YP_008376461.1| - 0.23 11.1 3.6 9.3 6.0 0.2 2.8 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like zf-NADH-PPase PF09297.6 gi|529077458|ref|YP_008376461.1| - 0.26 10.8 10.8 7 6.2 0.0 3.8 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain FYDLN_acid PF09538.5 gi|529077458|ref|YP_008376461.1| - 0.41 11.2 4.5 16 6.0 0.2 3.1 1 1 2 3 3 3 0 Protein of unknown function (FYDLN_acid) PhnA_Zn_Ribbon PF08274.7 gi|529077458|ref|YP_008376461.1| - 0.44 10.3 15.8 0.66 9.8 0.3 3.7 2 1 1 3 3 3 0 PhnA Zinc-Ribbon DUF1451 PF07295.6 gi|529077458|ref|YP_008376461.1| - 0.48 10.1 4.6 1.4 8.6 0.0 2.4 1 1 2 3 3 3 0 Protein of unknown function (DUF1451) zf-C3HC4_3 PF13920.1 gi|529077458|ref|YP_008376461.1| - 0.55 9.9 6.1 42 3.9 2.5 3.2 2 1 1 3 3 3 0 Zinc finger, C3HC4 type (RING finger) DNA_ligase_ZBD PF03119.11 gi|529077458|ref|YP_008376461.1| - 0.61 9.8 14.2 3.6 7.3 0.2 3.7 4 0 0 4 4 3 0 NAD-dependent DNA ligase C4 zinc finger domain FdhE PF04216.7 gi|529077458|ref|YP_008376461.1| - 0.74 9.4 6.0 8.8 5.9 0.1 2.3 1 1 1 2 2 2 0 Protein involved in formate dehydrogenase formation zinc_ribbon_2 PF13240.1 gi|529077458|ref|YP_008376461.1| - 0.79 9.2 9.2 8.9 5.9 0.2 3.5 3 1 0 3 3 3 0 zinc-ribbon domain Ogr_Delta PF04606.7 gi|529077458|ref|YP_008376461.1| - 0.79 9.4 6.7 8.9 6.0 0.0 3.8 4 0 0 4 4 4 0 Ogr/Delta-like zinc finger Zn_Tnp_IS91 PF14319.1 gi|529077458|ref|YP_008376461.1| - 0.97 8.9 4.8 1.2 8.7 0.0 2.5 2 1 1 3 3 3 0 Transposase zinc-binding domain C1_3 PF07649.7 gi|529077458|ref|YP_008376461.1| - 1.5 8.9 12.2 8.1 6.5 0.3 3.9 3 1 1 4 4 4 0 C1-like domain TFIIS_C PF01096.13 gi|529077458|ref|YP_008376461.1| - 1.5 8.5 9.0 8.2 6.1 0.3 3.8 4 0 0 4 4 4 0 Transcription factor S-II (TFIIS) zf-AN1 PF01428.11 gi|529077458|ref|YP_008376461.1| - 1.5 8.7 8.7 46 3.9 1.1 3.6 2 2 2 4 4 4 0 AN1-like Zinc finger ADK_lid PF05191.9 gi|529077458|ref|YP_008376461.1| - 1.5 8.5 8.4 30 4.3 0.0 3.7 3 1 0 3 3 3 0 Adenylate kinase, active site lid DUF1272 PF06906.6 gi|529077458|ref|YP_008376461.1| - 1.9 8.4 11.3 1.7 8.5 0.1 3.7 3 1 1 4 4 4 0 Protein of unknown function (DUF1272) A2L_zn_ribbon PF08792.5 gi|529077458|ref|YP_008376461.1| - 1.9 8.0 7.2 44 3.6 0.0 3.7 3 1 0 3 3 3 0 A2L zinc ribbon domain zf-ribbon_3 PF13248.1 gi|529077458|ref|YP_008376461.1| - 2.8 7.2 16.1 13 5.1 0.2 3.9 3 1 1 4 4 4 0 zinc-ribbon domain Zn_Tnp_IS1 PF03811.8 gi|529077458|ref|YP_008376461.1| - 5.8 6.4 11.3 7.4 6.1 0.1 3.4 4 0 0 4 4 3 0 InsA N-terminal domain Rubredoxin PF00301.15 gi|529077458|ref|YP_008376461.1| - 6.1 6.8 11.3 17 5.3 0.2 3.8 4 0 0 4 4 4 0 Rubredoxin DNA_RNApol_7kD PF03604.8 gi|529077458|ref|YP_008376461.1| - 7.2 6.1 9.5 6.9 6.2 1.1 3.2 1 1 2 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit Zn_Tnp_IS1595 PF12760.2 gi|529077458|ref|YP_008376461.1| - 7.9 6.3 10.7 9.3 6.1 0.9 3.5 1 1 3 4 4 4 0 Transposase zinc-ribbon domain zf-TFIIB PF13453.1 gi|529077458|ref|YP_008376461.1| - 8.6 5.6 13.9 1.9 7.7 2.2 3.7 2 1 2 4 4 4 0 Transcription factor zinc-finger TrmB PF01978.14 gi|529077463|ref|YP_008376466.1| - 4.5e-08 32.6 0.0 0.015 14.9 0.0 3.5 3 0 0 3 3 3 3 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|529077463|ref|YP_008376466.1| - 4.6e-08 32.7 0.1 0.65 9.8 0.0 4.2 4 1 0 4 4 4 3 Helix-turn-helix domain HTH_5 PF01022.15 gi|529077463|ref|YP_008376466.1| - 5.2e-08 32.4 0.0 0.00024 20.6 0.0 3.4 3 0 0 3 3 3 2 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|529077463|ref|YP_008376466.1| - 0.00075 19.0 0.1 0.2 11.3 0.0 3.0 3 0 0 3 3 3 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|529077463|ref|YP_008376466.1| - 0.0022 17.6 0.2 0.015 14.9 0.1 2.4 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.1 gi|529077463|ref|YP_008376466.1| - 0.058 13.1 0.0 1.1 9.0 0.0 2.6 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Acetyltransf_4 PF13420.1 gi|529077464|ref|YP_008376467.1| - 1.8e-30 105.9 0.0 2e-30 105.7 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|529077464|ref|YP_008376467.1| - 8.5e-12 44.9 0.0 1.2e-11 44.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.1 gi|529077464|ref|YP_008376467.1| - 4.9e-09 36.4 0.0 7.1e-09 35.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|529077464|ref|YP_008376467.1| - 1.1e-05 25.4 0.1 1.5e-05 25.1 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|529077464|ref|YP_008376467.1| - 9.7e-05 22.0 0.0 0.0003 20.4 0.0 1.8 1 1 1 2 2 2 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|529077464|ref|YP_008376467.1| - 0.00032 20.5 0.0 0.00042 20.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|529077464|ref|YP_008376467.1| - 0.051 13.7 0.0 0.076 13.1 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF2502 PF10697.4 gi|529077464|ref|YP_008376467.1| - 0.2 11.7 2.7 0.39 10.8 1.8 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2502) OrfB_Zn_ribbon PF07282.6 gi|529077465|ref|YP_008376468.1| - 1.5e-24 85.3 0.6 3.4e-24 84.2 0.4 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|529077465|ref|YP_008376468.1| - 1.1e-16 60.9 0.0 1.6e-16 60.4 0.0 1.1 1 0 0 1 1 1 1 Probable transposase zinc_ribbon_4 PF13717.1 gi|529077465|ref|YP_008376468.1| - 0.1 12.2 0.5 0.32 10.7 0.0 2.0 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|529077465|ref|YP_008376468.1| - 0.11 12.3 4.6 0.069 12.9 1.6 1.8 2 0 0 2 2 2 0 Double zinc ribbon DUF2387 PF09526.5 gi|529077465|ref|YP_008376468.1| - 0.14 12.1 1.5 2 8.3 0.1 2.7 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) zinc_ribbon_2 PF13240.1 gi|529077465|ref|YP_008376468.1| - 6.3 6.4 7.6 31 4.2 0.4 2.6 2 1 1 3 3 3 0 zinc-ribbon domain Tnp_DNA_bind PF14706.1 gi|529077466|ref|YP_008376469.1| - 4.4e-26 90.3 0.0 7.9e-26 89.5 0.0 1.4 1 0 0 1 1 1 1 Transposase DNA-binding DDE_Tnp_1 PF01609.16 gi|529077466|ref|YP_008376469.1| - 1.4e-05 24.7 0.1 2.5e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain Dimer_Tnp_Tn5 PF02281.11 gi|529077466|ref|YP_008376469.1| - 0.035 14.2 0.0 0.084 13.0 0.0 1.7 1 0 0 1 1 1 0 Transposase Tn5 dimerisation domain MarR_2 PF12802.2 gi|529077469|ref|YP_008376472.1| - 3.7e-07 29.6 0.9 5.3e-07 29.2 0.1 1.7 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|529077469|ref|YP_008376472.1| - 5.6e-06 25.9 0.0 8.9e-06 25.3 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|529077469|ref|YP_008376472.1| - 0.00016 21.3 0.1 0.00042 19.9 0.1 1.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|529077469|ref|YP_008376472.1| - 0.0027 17.0 0.0 0.0043 16.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Penicillinase_R PF03965.11 gi|529077469|ref|YP_008376472.1| - 0.017 15.1 0.0 0.031 14.3 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor PGA2 PF07543.7 gi|529077469|ref|YP_008376472.1| - 0.045 13.5 0.0 0.077 12.7 0.0 1.3 1 0 0 1 1 1 0 Protein trafficking PGA2 HTH_27 PF13463.1 gi|529077469|ref|YP_008376472.1| - 0.058 13.7 0.2 0.13 12.6 0.0 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|529077469|ref|YP_008376472.1| - 0.082 12.5 0.1 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain SHOCT PF09851.4 gi|529077471|ref|YP_008376474.1| - 5.8e-11 41.4 3.5 8.3e-11 40.9 2.5 1.3 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.6 gi|529077471|ref|YP_008376474.1| - 0.00032 20.4 1.5 0.00046 19.8 1.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) Methyltransf_7 PF03492.10 gi|529077472|ref|YP_008376475.1| - 0.097 11.4 0.0 0.11 11.2 0.0 1.0 1 0 0 1 1 1 0 SAM dependent carboxyl methyltransferase HTH_24 PF13412.1 gi|529077473|ref|YP_008376476.1| - 0.0021 17.4 1.0 0.23 10.8 0.0 2.8 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|529077473|ref|YP_008376476.1| - 0.004 16.7 0.8 1.1 9.0 0.0 2.6 3 0 0 3 3 3 2 HTH domain HTH_20 PF12840.2 gi|529077473|ref|YP_008376476.1| - 0.012 15.4 1.7 0.091 12.5 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain TrmB PF01978.14 gi|529077473|ref|YP_008376476.1| - 0.016 14.9 0.0 0.041 13.6 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|529077473|ref|YP_008376476.1| - 0.025 14.8 0.2 0.25 11.6 0.0 2.5 2 2 0 2 2 2 0 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|529077473|ref|YP_008376476.1| - 0.033 13.8 1.9 0.32 10.6 0.2 2.7 2 1 1 3 3 3 0 MarR family HTH_23 PF13384.1 gi|529077473|ref|YP_008376476.1| - 0.055 13.1 2.9 0.084 12.5 0.0 2.6 3 0 0 3 3 3 0 Homeodomain-like domain HTH_29 PF13551.1 gi|529077473|ref|YP_008376476.1| - 0.17 12.0 5.0 0.11 12.6 0.7 2.2 2 1 0 2 2 2 0 Winged helix-turn helix DUF1192 PF06698.6 gi|529077473|ref|YP_008376476.1| - 0.18 11.6 3.0 0.31 10.8 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) HTH_AsnC-type PF13404.1 gi|529077473|ref|YP_008376476.1| - 0.23 11.0 8.2 2.6 7.6 0.2 3.4 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain Prismane PF03063.15 gi|529077474|ref|YP_008376477.1| - 9.8e-167 555.4 0.0 1.1e-166 555.2 0.0 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family Epimerase PF01370.16 gi|529077475|ref|YP_008376478.1| - 2.8e-62 210.2 0.1 3.5e-62 209.9 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|529077475|ref|YP_008376478.1| - 8.6e-26 90.2 0.0 1.2e-25 89.8 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|529077475|ref|YP_008376478.1| - 1.4e-20 73.3 0.1 1.8e-20 73.0 0.1 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|529077475|ref|YP_008376478.1| - 7.8e-16 57.8 0.0 1.1e-14 54.0 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|529077475|ref|YP_008376478.1| - 3.3e-12 45.8 0.3 2.1e-11 43.2 0.2 1.9 1 1 0 1 1 1 1 Male sterility protein adh_short PF00106.20 gi|529077475|ref|YP_008376478.1| - 1.4e-11 44.5 0.3 3.3e-11 43.4 0.2 1.5 1 0 0 1 1 1 1 short chain dehydrogenase NAD_binding_10 PF13460.1 gi|529077475|ref|YP_008376478.1| - 3.3e-11 43.5 1.6 3.4e-10 40.2 1.1 2.1 1 1 0 1 1 1 1 NADH(P)-binding KR PF08659.5 gi|529077475|ref|YP_008376478.1| - 9.9e-06 25.3 0.2 2.6e-05 23.9 0.1 1.7 1 1 0 1 1 1 1 KR domain NmrA PF05368.8 gi|529077475|ref|YP_008376478.1| - 1.6e-05 24.3 0.7 3.5e-05 23.1 0.5 1.6 1 1 0 1 1 1 1 NmrA-like family Epimerase_Csub PF13950.1 gi|529077475|ref|YP_008376478.1| - 7.8e-05 22.5 0.2 0.00018 21.3 0.1 1.6 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit UDPG_MGDP_dh_N PF03721.9 gi|529077475|ref|YP_008376478.1| - 0.013 14.8 0.5 0.028 13.8 0.3 1.7 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.13 gi|529077475|ref|YP_008376478.1| - 0.019 14.6 0.1 0.04 13.5 0.1 1.7 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NTP_transferase PF00483.18 gi|529077476|ref|YP_008376479.1| - 4e-44 150.7 0.0 4.6e-44 150.5 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|529077476|ref|YP_008376479.1| - 4.3e-17 62.6 0.0 4.9e-17 62.4 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|529077476|ref|YP_008376479.1| - 1.1e-06 28.3 0.0 5.1e-06 26.1 0.0 1.9 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.21 gi|529077476|ref|YP_008376479.1| - 0.034 13.8 0.0 0.047 13.3 0.0 1.3 1 1 0 1 1 1 0 Glycosyl transferase family 2 FctA PF12892.2 gi|529077479|ref|YP_008376482.1| - 0.11 13.2 1.7 0.16 12.7 0.8 1.6 1 1 0 1 1 1 0 T surface-antigen of pili Cadherin-like PF12733.2 gi|529077479|ref|YP_008376482.1| - 0.3 11.3 3.9 0.34 11.1 1.9 1.6 1 1 0 1 1 1 0 Cadherin-like beta sandwich domain UDPG_MGDP_dh_N PF03721.9 gi|529077480|ref|YP_008376483.1| - 5e-57 192.2 0.3 1e-55 188.0 0.1 2.1 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|529077480|ref|YP_008376483.1| - 2.9e-34 117.1 0.0 9.9e-34 115.4 0.0 1.9 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|529077480|ref|YP_008376483.1| - 2.3e-27 95.2 0.0 8.6e-27 93.3 0.0 2.0 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_Gly3P_dh_N PF01210.18 gi|529077480|ref|YP_008376483.1| - 1.5e-07 31.3 0.1 3.8e-07 29.9 0.0 1.8 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|529077480|ref|YP_008376483.1| - 1.2e-06 28.2 0.1 2.8e-06 27.1 0.1 1.7 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|529077480|ref|YP_008376483.1| - 2.9e-06 27.5 0.1 0.14 12.5 0.0 4.0 3 1 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent Pyr_redox PF00070.22 gi|529077480|ref|YP_008376483.1| - 6.2e-05 23.3 0.4 0.00042 20.6 0.1 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.16 gi|529077480|ref|YP_008376483.1| - 0.0012 18.3 0.0 0.0026 17.3 0.0 1.6 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain ApbA PF02558.11 gi|529077480|ref|YP_008376483.1| - 0.0029 17.0 0.0 0.0051 16.2 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA TrkA_N PF02254.13 gi|529077480|ref|YP_008376483.1| - 0.01 15.8 0.7 0.33 10.9 0.0 3.0 3 0 0 3 3 3 0 TrkA-N domain DAO PF01266.19 gi|529077480|ref|YP_008376483.1| - 0.016 14.1 0.9 0.034 13.0 0.6 1.5 1 0 0 1 1 1 0 FAD dependent oxidoreductase NAD_binding_2 PF03446.10 gi|529077480|ref|YP_008376483.1| - 0.03 14.1 0.3 0.19 11.5 0.0 2.4 2 1 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Semialdhyde_dh PF01118.19 gi|529077480|ref|YP_008376483.1| - 0.031 14.5 1.6 0.89 9.8 0.1 3.4 3 1 0 3 3 3 0 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_11 PF14833.1 gi|529077480|ref|YP_008376483.1| - 0.056 13.5 0.2 0.23 11.5 0.1 2.0 2 0 0 2 2 2 0 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NAD_binding_10 PF13460.1 gi|529077480|ref|YP_008376483.1| - 0.64 9.9 8.0 0.46 10.4 2.0 2.9 2 2 1 3 3 3 0 NADH(P)-binding DUF433 PF04255.9 gi|529077481|ref|YP_008376484.1| - 1e-11 44.0 0.3 1.5e-11 43.5 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF433) DUF77 PF01910.12 gi|529077483|ref|YP_008376486.1| - 4.3e-18 64.7 0.6 4.9e-18 64.6 0.4 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF77 LacI PF00356.16 gi|529077483|ref|YP_008376486.1| - 0.022 14.3 0.2 0.053 13.1 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, lacI family Peptidase_M35 PF02102.10 gi|529077483|ref|YP_008376486.1| - 0.07 11.7 0.2 0.073 11.7 0.2 1.1 1 0 0 1 1 1 0 Deuterolysin metalloprotease (M35) family MCH PF02289.11 gi|529077484|ref|YP_008376487.1| - 6.2e-79 265.2 0.1 7e-79 265.1 0.1 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) HAD_2 PF13419.1 gi|529077485|ref|YP_008376488.1| - 7.1e-32 111.0 0.1 8.3e-32 110.8 0.0 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|529077485|ref|YP_008376488.1| - 1.4e-11 45.2 0.0 3.7e-10 40.5 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|529077485|ref|YP_008376488.1| - 4.6e-10 39.0 0.3 2.5e-09 36.7 0.1 2.1 3 0 0 3 3 3 1 HAD-hyrolase-like HAD PF12710.2 gi|529077485|ref|YP_008376488.1| - 0.0016 18.6 0.0 0.0018 18.4 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Aldolase_II PF00596.16 gi|529077487|ref|YP_008376490.1| - 2e-45 154.6 0.0 2.3e-45 154.4 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain FGGY_N PF00370.16 gi|529077488|ref|YP_008376491.1| - 1.4e-65 221.0 0.0 1.9e-65 220.5 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.11 gi|529077488|ref|YP_008376491.1| - 3.7e-34 118.0 0.0 5.4e-34 117.5 0.0 1.3 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.15 gi|529077488|ref|YP_008376491.1| - 0.00042 19.7 0.0 0.00075 18.8 0.0 1.4 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family DUF1680 PF07944.7 gi|529077489|ref|YP_008376492.1| - 1.7e-165 551.2 0.0 2.1e-165 550.9 0.0 1.1 1 0 0 1 1 1 1 Putative glycosyl hydrolase of unknown function (DUF1680) Alpha-L-AF_C PF06964.7 gi|529077490|ref|YP_008376493.1| - 5.7e-32 110.9 1.8 8e-32 110.4 1.3 1.2 1 0 0 1 1 1 1 Alpha-L-arabinofuranosidase C-terminus Glyco_hydro_97 PF10566.4 gi|529077491|ref|YP_008376494.1| - 1.1e-82 277.2 0.1 1.4e-82 276.8 0.1 1.1 1 0 0 1 1 1 1 Glycoside hydrolase 97 GH97_N PF14508.1 gi|529077491|ref|YP_008376494.1| - 4.3e-44 150.4 0.0 6.1e-44 149.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl-hydrolase 97 N-terminal GH97_C PF14509.1 gi|529077491|ref|YP_008376494.1| - 7.9e-18 64.4 0.0 6.4e-17 61.5 0.0 2.4 3 0 0 3 3 3 1 Glycosyl-hydrolase 97 C-terminal, oligomerisation Arabinose_Isome PF02610.10 gi|529077492|ref|YP_008376495.1| - 1.2e-170 567.2 0.0 1.6e-170 566.8 0.0 1.1 1 0 0 1 1 1 1 L-arabinose isomerase Arabinose_Iso_C PF11762.3 gi|529077492|ref|YP_008376495.1| - 4.9e-50 167.9 0.0 1.5e-49 166.3 0.0 1.9 2 0 0 2 2 2 1 L-arabinose isomerase C-terminal domain PfkB PF00294.19 gi|529077494|ref|YP_008376497.1| - 1e-58 198.8 0.0 1.2e-58 198.6 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|529077494|ref|YP_008376497.1| - 0.023 13.9 0.0 0.032 13.4 0.0 1.1 1 0 0 1 1 1 0 Phosphomethylpyrimidine kinase GlcNAc_2-epim PF07221.6 gi|529077495|ref|YP_008376498.1| - 1.6e-06 27.4 0.0 1.7e-06 27.3 0.0 1.0 1 0 0 1 1 1 1 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) GlcNAc_2-epim PF07221.6 gi|529077496|ref|YP_008376499.1| - 0.00013 21.1 0.1 0.00014 21.0 0.1 1.0 1 0 0 1 1 1 1 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) DUF3392 PF11872.3 gi|529077497|ref|YP_008376500.1| - 0.00033 20.5 2.3 0.00041 20.2 1.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3392) Abi PF02517.11 gi|529077497|ref|YP_008376500.1| - 0.0025 17.9 0.7 0.0032 17.5 0.5 1.1 1 0 0 1 1 1 1 CAAX protease self-immunity Yip1 PF04893.12 gi|529077497|ref|YP_008376500.1| - 0.013 15.0 2.3 0.016 14.7 1.6 1.1 1 0 0 1 1 1 0 Yip1 domain Tic20 PF09685.5 gi|529077497|ref|YP_008376500.1| - 0.021 14.7 1.9 0.025 14.5 1.3 1.1 1 0 0 1 1 1 0 Tic20-like protein Claudin_2 PF13903.1 gi|529077497|ref|YP_008376500.1| - 0.028 14.0 0.2 0.032 13.9 0.2 1.1 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction Fig1 PF12351.3 gi|529077497|ref|YP_008376500.1| - 0.074 12.9 0.4 0.082 12.7 0.2 1.1 1 0 0 1 1 1 0 Ca2+ regulator and membrane fusion protein Fig1 FtsX PF02687.16 gi|529077497|ref|YP_008376500.1| - 0.12 12.1 3.8 0.16 11.7 2.6 1.2 1 0 0 1 1 1 0 FtsX-like permease family DUF456 PF04306.8 gi|529077497|ref|YP_008376500.1| - 0.12 12.3 7.3 0.15 12.0 5.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF456) DUF4064 PF13273.1 gi|529077497|ref|YP_008376500.1| - 0.15 12.1 5.5 1.7 8.8 4.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF4064) Tetraspannin PF00335.15 gi|529077497|ref|YP_008376500.1| - 0.28 10.4 3.9 0.4 9.9 2.7 1.2 1 0 0 1 1 1 0 Tetraspanin family DUF202 PF02656.10 gi|529077497|ref|YP_008376500.1| - 1.9 8.7 4.8 31 4.8 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF202) ATPase_gene1 PF09527.5 gi|529077497|ref|YP_008376500.1| - 3.7 7.4 15.1 50 3.8 10.5 2.2 1 1 0 1 1 1 0 Putative F0F1-ATPase subunit (ATPase_gene1) ABC_tran PF00005.22 gi|529077498|ref|YP_008376501.1| - 7.9e-50 168.7 0.0 5.1e-27 94.8 0.0 2.3 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.7 gi|529077498|ref|YP_008376501.1| - 4.1e-37 126.3 4.7 1.3e-20 73.5 0.2 2.7 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|529077498|ref|YP_008376501.1| - 1.2e-18 68.1 1.7 3.8e-07 30.3 0.0 4.1 3 1 1 4 4 4 2 AAA domain SMC_N PF02463.14 gi|529077498|ref|YP_008376501.1| - 1.1e-06 28.1 0.7 0.54 9.4 0.0 3.6 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|529077498|ref|YP_008376501.1| - 5.9e-06 25.7 0.1 0.1 12.1 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|529077498|ref|YP_008376501.1| - 8e-06 25.3 0.1 0.028 13.8 0.0 2.8 3 0 0 3 3 2 2 AAA domain AAA_22 PF13401.1 gi|529077498|ref|YP_008376501.1| - 2.7e-05 24.3 7.8 0.099 12.7 0.2 4.1 2 2 0 2 2 2 2 AAA domain NACHT PF05729.7 gi|529077498|ref|YP_008376501.1| - 5e-05 23.0 0.4 0.33 10.5 0.0 2.5 2 0 0 2 2 2 2 NACHT domain AAA_10 PF12846.2 gi|529077498|ref|YP_008376501.1| - 6.9e-05 22.4 0.0 0.053 12.9 0.0 2.9 3 0 0 3 3 3 1 AAA-like domain AAA_16 PF13191.1 gi|529077498|ref|YP_008376501.1| - 7.8e-05 22.7 0.4 0.5 10.3 0.0 2.5 2 1 0 2 2 2 2 AAA ATPase domain NB-ARC PF00931.17 gi|529077498|ref|YP_008376501.1| - 0.00029 19.8 0.0 0.1 11.4 0.0 2.3 2 0 0 2 2 2 1 NB-ARC domain AAA_23 PF13476.1 gi|529077498|ref|YP_008376501.1| - 0.00029 21.2 0.0 0.75 10.0 0.0 2.3 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|529077498|ref|YP_008376501.1| - 0.00038 19.9 0.0 0.41 10.0 0.0 2.5 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_33 PF13671.1 gi|529077498|ref|YP_008376501.1| - 0.00042 20.1 0.0 1.1 9.1 0.0 2.4 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.17 gi|529077498|ref|YP_008376501.1| - 0.00045 20.3 0.0 0.72 10.0 0.0 2.7 2 0 0 2 2 2 1 RNA helicase KaiC PF06745.8 gi|529077498|ref|YP_008376501.1| - 0.0008 18.5 0.1 0.37 9.8 0.0 2.4 2 0 0 2 2 2 1 KaiC MMR_HSR1 PF01926.18 gi|529077498|ref|YP_008376501.1| - 0.00082 19.3 0.1 4.2 7.3 0.0 3.6 3 0 0 3 3 3 0 50S ribosome-binding GTPase MobB PF03205.9 gi|529077498|ref|YP_008376501.1| - 0.00083 19.0 0.6 0.55 9.9 0.0 2.4 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B DUF258 PF03193.11 gi|529077498|ref|YP_008376501.1| - 0.00084 18.5 0.6 0.4 9.8 0.1 2.8 2 1 1 3 3 3 1 Protein of unknown function, DUF258 FtsK_SpoIIIE PF01580.13 gi|529077498|ref|YP_008376501.1| - 0.00089 18.7 0.0 0.016 14.6 0.0 2.2 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_17 PF13207.1 gi|529077498|ref|YP_008376501.1| - 0.0012 19.6 0.0 2.8 8.7 0.0 3.0 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|529077498|ref|YP_008376501.1| - 0.0034 17.7 0.0 1.3 9.3 0.0 2.6 2 0 0 2 2 2 1 AAA domain PhoH PF02562.11 gi|529077498|ref|YP_008376501.1| - 0.0034 16.6 0.0 1.2 8.3 0.1 2.3 2 0 0 2 2 2 1 PhoH-like protein DUF87 PF01935.12 gi|529077498|ref|YP_008376501.1| - 0.0041 16.9 0.1 0.032 14.0 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function DUF87 Zeta_toxin PF06414.7 gi|529077498|ref|YP_008376501.1| - 0.005 15.9 0.0 4.2 6.4 0.0 3.1 3 0 0 3 3 3 0 Zeta toxin Miro PF08477.8 gi|529077498|ref|YP_008376501.1| - 0.005 17.3 0.0 2.3 8.7 0.0 2.6 2 0 0 2 2 2 1 Miro-like protein UPF0079 PF02367.12 gi|529077498|ref|YP_008376501.1| - 0.0067 16.0 0.1 1 9.0 0.0 2.4 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 AAA_5 PF07728.9 gi|529077498|ref|YP_008376501.1| - 0.012 15.3 0.8 6.3 6.5 0.2 2.6 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) PRK PF00485.13 gi|529077498|ref|YP_008376501.1| - 0.017 14.7 0.5 4.5 6.7 0.0 2.4 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family Sigma54_activat PF00158.21 gi|529077498|ref|YP_008376501.1| - 0.017 14.5 0.1 1.1 8.7 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_19 PF13245.1 gi|529077498|ref|YP_008376501.1| - 0.017 14.8 0.0 5.4 6.8 0.0 2.4 2 0 0 2 2 2 0 Part of AAA domain AAA_24 PF13479.1 gi|529077498|ref|YP_008376501.1| - 0.018 14.6 0.0 0.28 10.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|529077498|ref|YP_008376501.1| - 0.02 15.0 0.7 7.1 6.8 0.5 2.6 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|529077498|ref|YP_008376501.1| - 0.068 12.8 0.0 11 5.5 0.0 2.5 2 0 0 2 2 2 0 Archaeal ATPase T2SE PF00437.15 gi|529077498|ref|YP_008376501.1| - 0.08 11.8 0.0 2.8 6.7 0.0 2.5 2 0 0 2 2 2 0 Type II/IV secretion system protein ABC_ATPase PF09818.4 gi|529077498|ref|YP_008376501.1| - 0.083 11.4 0.3 12 4.3 0.0 3.0 3 0 0 3 3 3 0 Predicted ATPase of the ABC class Mg_chelatase PF01078.16 gi|529077498|ref|YP_008376501.1| - 0.09 11.9 0.0 4.6 6.3 0.0 2.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI ArgK PF03308.11 gi|529077498|ref|YP_008376501.1| - 0.11 11.3 0.9 0.17 10.6 0.0 1.6 2 0 0 2 2 2 0 ArgK protein AAA_15 PF13175.1 gi|529077498|ref|YP_008376501.1| - 0.11 11.5 0.2 8.5 5.2 0.1 2.4 3 0 0 3 3 2 0 AAA ATPase domain SbcCD_C PF13558.1 gi|529077498|ref|YP_008376501.1| - 0.14 12.0 3.7 6.2 6.8 0.5 3.4 2 2 0 2 2 2 0 Putative exonuclease SbcCD, C subunit Septin PF00735.13 gi|529077498|ref|YP_008376501.1| - 0.15 11.0 0.0 15 4.5 0.0 2.2 2 0 0 2 2 2 0 Septin Pox_A32 PF04665.7 gi|529077498|ref|YP_008376501.1| - 0.19 11.0 0.1 5.7 6.1 0.0 2.2 2 0 0 2 2 2 0 Poxvirus A32 protein Hpr_kinase_C PF07475.7 gi|529077498|ref|YP_008376501.1| - 0.63 9.3 2.8 6.7 5.9 0.2 2.3 2 0 0 2 2 2 0 HPr Serine kinase C-terminal domain BPD_transp_1 PF00528.17 gi|529077499|ref|YP_008376502.1| - 1.1e-21 77.2 17.0 1.1e-21 77.2 11.8 2.0 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Chlorosome_CsmC PF11098.3 gi|529077499|ref|YP_008376502.1| - 0.0068 16.1 1.5 0.012 15.3 1.0 1.3 1 0 0 1 1 1 1 Chlorosome envelope protein C Pkr1 PF08636.5 gi|529077499|ref|YP_008376502.1| - 0.23 11.5 3.2 0.26 11.3 0.7 2.2 2 0 0 2 2 2 0 ER protein Pkr1 DDE_Tnp_1 PF01609.16 gi|529077500|ref|YP_008376503.1| - 4.3e-08 32.9 0.1 7e-08 32.2 0.1 1.3 1 0 0 1 1 1 1 Transposase DDE domain UPF0236 PF06782.6 gi|529077502|ref|YP_008376505.1| - 4.1e-07 28.7 0.1 3.2e-05 22.5 0.0 2.2 2 0 0 2 2 2 2 Uncharacterised protein family (UPF0236) Transposase_mut PF00872.13 gi|529077502|ref|YP_008376505.1| - 9.9e-05 21.0 1.5 0.024 13.2 0.1 2.5 2 1 0 2 2 2 2 Transposase, Mutator family SBP_bac_5 PF00496.17 gi|529077503|ref|YP_008376506.1| - 3.4e-27 95.2 6.4 3.4e-27 95.2 4.4 1.6 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 5 Middle Glyco_hydro_32N PF00251.15 gi|529077504|ref|YP_008376507.1| - 1.8e-77 260.7 0.1 2.3e-77 260.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 32 N-terminal domain Glyco_hydro_32C PF08244.7 gi|529077504|ref|YP_008376507.1| - 5.8e-11 42.6 0.0 2.5e-10 40.6 0.0 2.0 2 0 0 2 2 2 1 Glycosyl hydrolases family 32 C terminal Glyco_hydro_42M PF08532.5 gi|529077504|ref|YP_008376507.1| - 0.02 14.0 0.0 0.04 13.0 0.0 1.5 1 0 0 1 1 1 0 Beta-galactosidase trimerisation domain Regulator_TrmB PF11495.3 gi|529077507|ref|YP_008376510.1| - 4.8e-33 114.0 0.0 7e-33 113.5 0.0 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.14 gi|529077507|ref|YP_008376510.1| - 1.5e-16 59.8 0.1 2.9e-16 58.9 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|529077507|ref|YP_008376510.1| - 0.00088 18.8 0.0 0.0021 17.6 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|529077507|ref|YP_008376510.1| - 0.02 14.2 0.0 0.062 12.7 0.0 2.0 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding UPF0122 PF04297.9 gi|529077507|ref|YP_008376510.1| - 0.032 14.2 0.1 0.5 10.4 0.0 2.6 2 0 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_28 PF13518.1 gi|529077507|ref|YP_008376510.1| - 0.045 13.7 0.0 0.11 12.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.15 gi|529077507|ref|YP_008376510.1| - 0.075 13.1 0.0 0.17 12.0 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator E2R135 PF11570.3 gi|529077508|ref|YP_008376511.1| - 0.037 14.1 0.6 0.067 13.2 0.4 1.4 1 1 0 1 1 1 0 Coiled-coil receptor-binding R-domain of colicin E2 Reo_sigmaC PF04582.7 gi|529077509|ref|YP_008376512.1| - 0.00032 20.0 13.6 0.16 11.1 0.2 3.4 2 1 1 3 3 3 3 Reovirus sigma C capsid protein Atg14 PF10186.4 gi|529077509|ref|YP_008376512.1| - 0.00034 19.6 51.0 0.0061 15.5 9.5 4.2 1 1 4 5 5 5 3 UV radiation resistance protein and autophagy-related subunit 14 IFT57 PF10498.4 gi|529077509|ref|YP_008376512.1| - 0.0011 17.7 34.9 0.0056 15.4 9.4 2.3 2 0 0 2 2 2 2 Intra-flagellar transport protein 57 Spc7 PF08317.6 gi|529077509|ref|YP_008376512.1| - 0.0015 17.2 58.6 0.2 10.2 4.4 3.9 2 2 2 4 4 4 4 Spc7 kinetochore protein Baculo_PEP_C PF04513.7 gi|529077509|ref|YP_008376512.1| - 0.0019 18.0 25.7 0.31 10.8 0.1 4.8 2 2 2 4 4 4 3 Baculovirus polyhedron envelope protein, PEP, C terminus AAA_27 PF13514.1 gi|529077509|ref|YP_008376512.1| - 0.004 14.9 59.1 0.012 13.3 18.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|529077509|ref|YP_008376512.1| - 0.0059 16.9 64.1 81 3.4 30.7 4.9 1 1 0 2 2 2 0 AAA domain Prefoldin_2 PF01920.15 gi|529077509|ref|YP_008376512.1| - 0.0072 16.0 8.5 0.0072 16.0 5.9 7.5 2 2 5 7 7 7 1 Prefoldin subunit NPV_P10 PF05531.7 gi|529077509|ref|YP_008376512.1| - 0.014 15.6 28.8 1.2 9.4 0.8 6.4 2 2 4 6 6 6 0 Nucleopolyhedrovirus P10 protein AAA_13 PF13166.1 gi|529077509|ref|YP_008376512.1| - 0.017 13.6 45.5 0.72 8.2 13.9 2.7 1 1 1 2 2 2 0 AAA domain ADIP PF11559.3 gi|529077509|ref|YP_008376512.1| - 0.051 13.4 59.9 0.049 13.5 9.5 5.6 1 1 4 5 5 5 0 Afadin- and alpha -actinin-Binding DUF3584 PF12128.3 gi|529077509|ref|YP_008376512.1| - 0.066 10.5 60.9 1.4 6.1 17.6 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) Myosin_tail_1 PF01576.14 gi|529077509|ref|YP_008376512.1| - 0.16 9.7 76.8 0.2 9.3 22.9 3.1 2 1 1 3 3 3 0 Myosin tail IncA PF04156.9 gi|529077509|ref|YP_008376512.1| - 0.18 11.3 82.9 2.2 7.8 19.4 4.6 2 2 3 5 5 5 0 IncA protein LPP PF04728.8 gi|529077509|ref|YP_008376512.1| - 0.19 11.5 5.4 5.1 6.9 0.1 3.8 3 1 0 3 3 3 0 Lipoprotein leucine-zipper CENP-F_leu_zip PF10473.4 gi|529077509|ref|YP_008376512.1| - 0.39 10.5 76.0 0.025 14.4 15.6 5.6 2 2 2 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DivIC PF04977.10 gi|529077509|ref|YP_008376512.1| - 0.54 9.7 74.7 0.033 13.6 0.6 8.9 2 2 7 9 9 9 0 Septum formation initiator DUF4201 PF13870.1 gi|529077509|ref|YP_008376512.1| - 0.56 9.6 48.9 0.088 12.2 0.9 4.8 3 1 1 4 4 4 0 Domain of unknown function (DUF4201) Mnd1 PF03962.10 gi|529077509|ref|YP_008376512.1| - 1.7 8.2 60.0 0.27 10.8 9.3 5.1 1 1 3 5 5 5 0 Mnd1 family Filament PF00038.16 gi|529077509|ref|YP_008376512.1| - 2.2 7.6 65.7 0.061 12.7 6.5 4.3 1 1 3 4 4 4 0 Intermediate filament protein FliD_N PF02465.13 gi|529077509|ref|YP_008376512.1| - 3 8.2 20.7 12 6.3 3.8 5.9 2 2 3 5 5 5 0 Flagellar hook-associated protein 2 N-terminus DUF4140 PF13600.1 gi|529077509|ref|YP_008376512.1| - 3.9 7.9 71.8 0.38 11.2 1.2 8.7 2 2 6 8 8 8 0 N-terminal domain of unknown function (DUF4140) GAS PF13851.1 gi|529077509|ref|YP_008376512.1| - 5.3 6.1 57.4 1.1 8.4 8.7 4.3 2 2 2 4 4 4 0 Growth-arrest specific micro-tubule binding ERM PF00769.14 gi|529077509|ref|YP_008376512.1| - 7.4 6.0 76.1 0.44 10.0 17.3 4.5 2 2 2 4 4 4 0 Ezrin/radixin/moesin family DUF4200 PF13863.1 gi|529077509|ref|YP_008376512.1| - 9.7 6.1 74.3 0.7 9.8 1.2 6.5 2 2 5 7 7 7 0 Domain of unknown function (DUF4200) PfkB PF00294.19 gi|529077510|ref|YP_008376513.1| - 2.2e-43 148.5 2.8 2.7e-43 148.2 1.9 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase BtpA PF03437.10 gi|529077511|ref|YP_008376514.1| - 1.2e-80 270.4 0.4 1.4e-80 270.2 0.3 1.0 1 0 0 1 1 1 1 BtpA family Asp_Glu_race PF01177.17 gi|529077511|ref|YP_008376514.1| - 0.00055 19.8 0.2 0.0028 17.6 0.2 2.0 1 1 0 1 1 1 1 Asp/Glu/Hydantoin racemase Trp_syntA PF00290.15 gi|529077511|ref|YP_008376514.1| - 0.00073 18.1 0.0 0.0015 17.0 0.0 1.6 1 0 0 1 1 1 1 Tryptophan synthase alpha chain PcrB PF01884.12 gi|529077511|ref|YP_008376514.1| - 0.0025 17.1 0.7 0.34 10.1 0.2 2.3 1 1 1 2 2 2 2 PcrB family Asparaginase PF00710.15 gi|529077511|ref|YP_008376514.1| - 0.0031 16.4 0.1 0.0047 15.8 0.1 1.2 1 0 0 1 1 1 1 Asparaginase Actin PF00022.14 gi|529077511|ref|YP_008376514.1| - 0.015 13.7 0.0 0.022 13.2 0.0 1.3 1 0 0 1 1 1 0 Actin B12-binding PF02310.14 gi|529077511|ref|YP_008376514.1| - 0.033 14.0 1.8 0.11 12.3 1.2 1.9 1 1 0 1 1 1 0 B12 binding domain DMRL_synthase PF00885.14 gi|529077511|ref|YP_008376514.1| - 0.085 12.5 0.3 14 5.3 0.0 2.5 2 1 0 2 2 2 0 6,7-dimethyl-8-ribityllumazine synthase FMN_dh PF01070.13 gi|529077511|ref|YP_008376514.1| - 0.42 9.4 5.2 0.84 8.4 1.7 2.3 3 0 0 3 3 3 0 FMN-dependent dehydrogenase Usp PF00582.21 gi|529077512|ref|YP_008376515.1| - 9.6e-18 64.7 0.8 1.1e-17 64.4 0.5 1.1 1 0 0 1 1 1 1 Universal stress protein family Glyco_hydro_2_N PF02837.13 gi|529077513|ref|YP_008376516.1| - 4.8e-32 110.8 0.3 2.5e-31 108.4 0.1 2.2 2 0 0 2 2 2 1 Glycosyl hydrolases family 2, sugar binding domain Glyco_hydro_2_C PF02836.12 gi|529077513|ref|YP_008376516.1| - 5.5e-32 110.8 0.1 7.7e-32 110.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, TIM barrel domain Glyco_hydro_2 PF00703.16 gi|529077513|ref|YP_008376516.1| - 5.3e-07 30.0 0.1 1.3e-06 28.7 0.1 1.7 1 0 0 1 1 1 1 Glycosyl hydrolases family 2 BetaGal_dom4_5 PF13364.1 gi|529077513|ref|YP_008376516.1| - 2.3e-06 27.8 0.1 3.5e-05 24.0 0.1 2.5 2 0 0 2 2 2 1 Beta-galactosidase jelly roll domain Bac_rhamnosid_N PF08531.5 gi|529077513|ref|YP_008376516.1| - 0.024 14.1 0.5 0.078 12.5 0.4 2.0 1 1 0 1 1 1 0 Alpha-L-rhamnosidase N-terminal domain DUF4434 PF14488.1 gi|529077513|ref|YP_008376516.1| - 0.057 13.1 0.3 0.12 12.1 0.2 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4434) MFS_1 PF07690.11 gi|529077514|ref|YP_008376517.1| - 1.1e-44 152.5 38.1 8e-32 110.3 9.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|529077514|ref|YP_008376517.1| - 1e-11 43.9 22.5 3.6e-09 35.5 5.7 2.8 1 1 2 3 3 3 2 MFS/sugar transport protein Sugar_tr PF00083.19 gi|529077514|ref|YP_008376517.1| - 1.3e-11 43.7 4.5 1.3e-11 43.7 3.1 2.3 2 0 0 2 2 2 1 Sugar (and other) transporter MFS_3 PF05977.8 gi|529077514|ref|YP_008376517.1| - 0.1 10.7 16.7 0.63 8.0 11.6 1.9 1 1 0 1 1 1 0 Transmembrane secretion effector Lactamase_B_2 PF12706.2 gi|529077515|ref|YP_008376518.1| - 1.4e-14 54.0 0.0 1.7e-14 53.7 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain PfkB PF00294.19 gi|529077516|ref|YP_008376519.1| - 1.2e-48 165.8 0.0 1.4e-48 165.6 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase PEP-utilizers PF00391.18 gi|529077516|ref|YP_008376519.1| - 0.0036 16.8 0.5 1.7 8.2 0.0 2.8 3 0 0 3 3 3 2 PEP-utilising enzyme, mobile domain adh_short PF00106.20 gi|529077517|ref|YP_008376520.1| - 1.3e-28 100.0 1.0 1.6e-28 99.6 0.7 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|529077517|ref|YP_008376520.1| - 1.3e-20 74.2 0.0 1.6e-20 73.9 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Epimerase PF01370.16 gi|529077517|ref|YP_008376520.1| - 2.8e-09 36.7 0.1 3.9e-09 36.3 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family KR PF08659.5 gi|529077517|ref|YP_008376520.1| - 3.5e-08 33.3 1.8 6.9e-08 32.3 1.2 1.5 1 1 0 1 1 1 1 KR domain 3HCDH_N PF02737.13 gi|529077517|ref|YP_008376520.1| - 0.0013 18.4 0.7 0.0018 17.9 0.5 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3Beta_HSD PF01073.14 gi|529077517|ref|YP_008376520.1| - 0.0026 16.5 0.2 0.0033 16.1 0.1 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|529077517|ref|YP_008376520.1| - 0.0041 16.0 0.1 0.0059 15.5 0.1 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|529077517|ref|YP_008376520.1| - 0.0047 15.8 1.6 0.036 12.9 0.5 2.5 1 1 1 2 2 2 1 RmlD substrate binding domain TrkA_N PF02254.13 gi|529077517|ref|YP_008376520.1| - 0.0067 16.4 0.5 0.013 15.4 0.3 1.4 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_2 PF03446.10 gi|529077517|ref|YP_008376520.1| - 0.014 15.2 0.1 0.025 14.4 0.1 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase MTS PF05175.9 gi|529077517|ref|YP_008376520.1| - 0.014 14.7 0.4 0.025 13.9 0.3 1.3 1 0 0 1 1 1 0 Methyltransferase small domain NmrA PF05368.8 gi|529077517|ref|YP_008376520.1| - 0.021 14.0 1.4 0.025 13.8 0.3 1.5 2 0 0 2 2 2 0 NmrA-like family UDPG_MGDP_dh_N PF03721.9 gi|529077517|ref|YP_008376520.1| - 0.043 13.2 0.3 0.059 12.7 0.2 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_8 PF13450.1 gi|529077517|ref|YP_008376520.1| - 0.077 13.0 0.4 0.25 11.3 0.3 1.9 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain THF_DHG_CYH_C PF02882.14 gi|529077517|ref|YP_008376520.1| - 0.09 11.8 0.0 0.16 11.0 0.0 1.3 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain F420_oxidored PF03807.12 gi|529077517|ref|YP_008376520.1| - 0.11 12.8 0.1 0.22 11.9 0.1 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent AdoHcyase_NAD PF00670.16 gi|529077517|ref|YP_008376520.1| - 0.37 10.6 2.8 0.68 9.7 1.7 1.5 1 1 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain UxuA PF03786.8 gi|529077518|ref|YP_008376521.1| - 3.3e-89 298.8 0.0 8.2e-63 212.0 0.0 2.0 1 1 1 2 2 2 2 D-mannonate dehydratase (UxuA) AP_endonuc_2 PF01261.19 gi|529077518|ref|YP_008376521.1| - 9.1e-14 51.2 0.0 2.4e-12 46.5 0.0 2.1 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel IclR PF01614.13 gi|529077519|ref|YP_008376522.1| - 2.1e-30 105.0 0.0 3.8e-30 104.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|529077519|ref|YP_008376522.1| - 2.2e-14 52.7 0.1 4.3e-12 45.4 0.0 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|529077519|ref|YP_008376522.1| - 1.5e-06 27.9 0.1 4.6e-06 26.3 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|529077519|ref|YP_008376522.1| - 6.2e-06 25.5 0.0 2.6e-05 23.5 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|529077519|ref|YP_008376522.1| - 2.3e-05 24.0 0.1 0.0013 18.3 0.0 2.4 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|529077519|ref|YP_008376522.1| - 2.7e-05 23.7 0.0 9.8e-05 21.9 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|529077519|ref|YP_008376522.1| - 4.5e-05 23.0 0.1 0.00075 19.1 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.7 gi|529077519|ref|YP_008376522.1| - 5.2e-05 22.8 0.1 0.00063 19.3 0.0 2.5 3 0 0 3 3 3 1 HTH domain Fe_dep_repress PF01325.14 gi|529077519|ref|YP_008376522.1| - 0.0031 17.4 0.1 0.0082 16.0 0.0 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain SMC_Nse1 PF07574.8 gi|529077519|ref|YP_008376522.1| - 0.0041 16.7 0.3 0.007 16.0 0.1 1.5 2 0 0 2 2 2 1 Nse1 non-SMC component of SMC5-6 complex MarR PF01047.17 gi|529077519|ref|YP_008376522.1| - 0.005 16.5 0.0 0.022 14.4 0.0 1.9 2 0 0 2 2 2 1 MarR family Adaptin_binding PF10199.4 gi|529077519|ref|YP_008376522.1| - 0.021 15.0 0.7 0.61 10.3 0.0 2.3 2 0 0 2 2 2 0 Alpha and gamma adaptin binding protein p34 HTH_34 PF13601.1 gi|529077519|ref|YP_008376522.1| - 0.023 14.7 0.1 0.057 13.4 0.0 1.7 2 0 0 2 2 1 0 Winged helix DNA-binding domain DUF1803 PF08820.5 gi|529077519|ref|YP_008376522.1| - 0.024 14.3 0.0 0.044 13.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1803) HTH_AsnC-type PF13404.1 gi|529077519|ref|YP_008376522.1| - 0.056 12.9 0.7 4 7.0 0.0 2.9 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain HTH_36 PF13730.1 gi|529077519|ref|YP_008376522.1| - 0.057 13.5 0.0 0.13 12.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain DUF742 PF05331.6 gi|529077519|ref|YP_008376522.1| - 0.061 12.9 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF742) Rrf2 PF02082.15 gi|529077519|ref|YP_008376522.1| - 0.069 13.2 0.0 0.65 10.1 0.0 2.1 2 0 0 2 2 2 0 Transcriptional regulator CENP-B_N PF04218.8 gi|529077519|ref|YP_008376522.1| - 0.077 12.4 0.0 0.4 10.1 0.0 2.1 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain FeoC PF09012.5 gi|529077519|ref|YP_008376522.1| - 0.081 12.6 0.0 0.19 11.4 0.0 1.6 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_45 PF14947.1 gi|529077519|ref|YP_008376522.1| - 0.099 12.4 0.0 0.23 11.3 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_Tnp_1 PF01527.15 gi|529077519|ref|YP_008376522.1| - 0.15 12.0 0.2 9.2 6.3 0.0 2.3 2 0 0 2 2 2 0 Transposase UPF0236 PF06782.6 gi|529077520|ref|YP_008376523.1| - 4.1e-07 28.7 0.1 3.2e-05 22.5 0.0 2.2 2 0 0 2 2 2 2 Uncharacterised protein family (UPF0236) Transposase_mut PF00872.13 gi|529077520|ref|YP_008376523.1| - 9.9e-05 21.0 1.5 0.024 13.2 0.1 2.5 2 1 0 2 2 2 2 Transposase, Mutator family GTP_EFTU PF00009.22 gi|529077521|ref|YP_008376524.1| - 2.8e-33 114.9 0.0 4.2e-33 114.3 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|529077521|ref|YP_008376524.1| - 1.8e-16 60.1 0.0 3.8e-16 59.0 0.0 1.6 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|529077521|ref|YP_008376524.1| - 6.1e-08 32.6 0.6 1.9e-07 31.1 0.4 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 ATP_bind_1 PF03029.12 gi|529077521|ref|YP_008376524.1| - 0.0032 17.0 0.5 0.024 14.1 0.0 2.0 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein MMR_HSR1 PF01926.18 gi|529077521|ref|YP_008376524.1| - 0.025 14.5 0.0 0.051 13.5 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase Hydrolase_3 PF08282.7 gi|529077522|ref|YP_008376525.1| - 9.1e-25 87.6 0.0 5.2e-17 62.2 0.1 2.0 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|529077522|ref|YP_008376525.1| - 1.6e-06 28.6 0.3 2.2e-05 24.9 0.2 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|529077522|ref|YP_008376525.1| - 4.8e-06 26.0 0.0 6.3e-05 22.3 0.0 2.0 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.2 gi|529077522|ref|YP_008376525.1| - 0.00017 21.7 1.4 0.066 13.3 0.0 2.6 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|529077522|ref|YP_008376525.1| - 0.0038 17.4 0.1 0.0094 16.1 0.1 1.7 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|529077522|ref|YP_008376525.1| - 0.11 12.1 0.7 0.25 11.0 0.5 1.7 1 0 0 1 1 1 0 HAD-hyrolase-like DUF389 PF04087.9 gi|529077523|ref|YP_008376526.1| - 9.8e-35 119.5 18.0 9.8e-35 119.5 12.5 2.0 3 0 0 3 3 3 1 Domain of unknown function (DUF389) DUF4131 PF13567.1 gi|529077523|ref|YP_008376526.1| - 0.037 13.4 0.2 0.037 13.4 0.1 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) RTA1 PF04479.8 gi|529077523|ref|YP_008376526.1| - 1.7 8.0 7.4 0.72 9.2 0.6 2.2 2 0 0 2 2 2 0 RTA1 like protein PTS_EIIC_2 PF13303.1 gi|529077523|ref|YP_008376526.1| - 3.5 6.4 24.8 11 4.8 17.2 1.7 1 1 0 1 1 1 0 Phosphotransferase system, EIIC SIMPL PF04402.9 gi|529077524|ref|YP_008376527.1| - 7.7e-35 120.6 14.0 9.1e-35 120.4 9.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF541) DUF2077 PF09850.4 gi|529077524|ref|YP_008376527.1| - 0.0098 15.3 1.5 0.0099 15.2 0.2 1.6 2 0 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2077) DUF3209 PF11483.3 gi|529077524|ref|YP_008376527.1| - 0.35 11.2 2.9 0.23 11.7 0.4 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3209) BPD_transp_1 PF00528.17 gi|529077525|ref|YP_008376528.1| - 2.1e-17 63.2 9.2 2.1e-17 63.2 6.4 2.0 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|529077526|ref|YP_008376529.1| - 2.8e-35 121.5 0.0 3.6e-35 121.2 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|529077526|ref|YP_008376529.1| - 9e-11 42.2 0.0 0.00013 22.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|529077526|ref|YP_008376529.1| - 8.8e-07 28.3 0.0 0.00037 19.7 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|529077526|ref|YP_008376529.1| - 6.1e-05 22.2 0.0 9.6e-05 21.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_30 PF13604.1 gi|529077526|ref|YP_008376529.1| - 0.0001 21.9 0.2 0.00025 20.7 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|529077526|ref|YP_008376529.1| - 0.00037 19.9 0.0 0.00071 19.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|529077526|ref|YP_008376529.1| - 0.00049 20.1 2.6 0.0053 16.7 1.8 2.5 1 1 0 1 1 1 1 AAA ATPase domain ABC_ATPase PF09818.4 gi|529077526|ref|YP_008376529.1| - 0.00082 18.0 0.0 0.49 8.9 0.0 2.1 2 0 0 2 2 2 2 Predicted ATPase of the ABC class Zeta_toxin PF06414.7 gi|529077526|ref|YP_008376529.1| - 0.0022 17.1 0.0 0.0032 16.5 0.0 1.2 1 0 0 1 1 1 1 Zeta toxin AAA_23 PF13476.1 gi|529077526|ref|YP_008376529.1| - 0.0063 16.8 0.0 0.009 16.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|529077526|ref|YP_008376529.1| - 0.011 15.2 0.0 0.033 13.6 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain AAA_33 PF13671.1 gi|529077526|ref|YP_008376529.1| - 0.012 15.5 0.0 0.016 15.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|529077526|ref|YP_008376529.1| - 0.013 15.3 0.4 0.13 12.1 0.3 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.1 gi|529077526|ref|YP_008376529.1| - 0.015 14.3 0.0 0.17 10.9 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.1 gi|529077526|ref|YP_008376529.1| - 0.015 15.4 0.0 0.036 14.2 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|529077526|ref|YP_008376529.1| - 0.021 15.6 0.1 0.053 14.3 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|529077526|ref|YP_008376529.1| - 0.028 13.8 0.1 0.13 11.6 0.1 2.2 2 1 0 2 2 2 0 AAA domain APS_kinase PF01583.15 gi|529077526|ref|YP_008376529.1| - 0.044 13.4 0.0 0.085 12.5 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase MutS_V PF00488.16 gi|529077526|ref|YP_008376529.1| - 0.063 12.6 0.0 0.1 11.9 0.0 1.3 1 0 0 1 1 1 0 MutS domain V AAA_19 PF13245.1 gi|529077526|ref|YP_008376529.1| - 0.12 12.1 0.0 0.29 10.9 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain AAA_14 PF13173.1 gi|529077526|ref|YP_008376529.1| - 0.12 12.2 0.0 0.21 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|529077526|ref|YP_008376529.1| - 0.13 11.9 0.1 0.23 11.1 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B oligo_HPY PF08352.7 gi|529077526|ref|YP_008376529.1| - 0.14 12.5 0.0 0.26 11.6 0.0 1.5 1 0 0 1 1 1 0 Oligopeptide/dipeptide transporter, C-terminal region BPD_transp_1 PF00528.17 gi|529077527|ref|YP_008376530.1| - 1.5e-19 70.1 6.6 1.5e-19 70.1 4.6 1.8 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_3 PF00497.15 gi|529077528|ref|YP_008376531.1| - 1.2e-55 188.1 0.3 1.4e-55 187.9 0.2 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1 PF09084.6 gi|529077528|ref|YP_008376531.1| - 9.7e-07 28.5 0.1 2.7e-05 23.8 0.0 2.0 2 0 0 2 2 2 1 NMT1/THI5 like OpuAC PF04069.7 gi|529077528|ref|YP_008376531.1| - 0.0048 16.2 0.5 0.78 9.0 0.0 2.1 2 0 0 2 2 2 2 Substrate binding domain of ABC-type glycine betaine transport system FtsH_ext PF06480.10 gi|529077528|ref|YP_008376531.1| - 0.069 13.3 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 FtsH Extracellular MLTD_N PF06474.7 gi|529077528|ref|YP_008376531.1| - 0.46 10.7 2.0 0.95 9.7 1.4 1.5 1 0 0 1 1 1 0 MltD lipid attachment motif MMR_HSR1 PF01926.18 gi|529077529|ref|YP_008376532.1| - 4.5e-19 68.5 0.0 8.2e-19 67.6 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase NOG1 PF06858.9 gi|529077529|ref|YP_008376532.1| - 1.7e-18 66.2 0.0 3.3e-18 65.2 0.0 1.5 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) FeoB_N PF02421.13 gi|529077529|ref|YP_008376532.1| - 3.4e-11 42.6 0.0 5.8e-11 41.9 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Miro PF08477.8 gi|529077529|ref|YP_008376532.1| - 8e-06 26.3 0.0 1.4e-05 25.5 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein Dynamin_N PF00350.18 gi|529077529|ref|YP_008376532.1| - 9.9e-06 25.4 0.3 0.077 12.8 0.0 2.8 2 1 1 3 3 3 2 Dynamin family AIG1 PF04548.11 gi|529077529|ref|YP_008376532.1| - 0.0005 19.2 0.0 0.00079 18.5 0.0 1.3 1 0 0 1 1 1 1 AIG1 family AAA_16 PF13191.1 gi|529077529|ref|YP_008376532.1| - 0.00096 19.1 1.0 0.03 14.3 0.0 2.5 1 1 2 3 3 3 1 AAA ATPase domain GTP_EFTU PF00009.22 gi|529077529|ref|YP_008376532.1| - 0.012 15.0 0.0 0.11 11.8 0.0 2.4 1 1 0 1 1 1 0 Elongation factor Tu GTP binding domain Ras PF00071.17 gi|529077529|ref|YP_008376532.1| - 0.014 14.8 0.0 0.035 13.4 0.0 1.7 1 1 0 1 1 1 0 Ras family DUF258 PF03193.11 gi|529077529|ref|YP_008376532.1| - 0.031 13.4 0.0 0.13 11.4 0.0 1.9 1 1 0 1 1 1 0 Protein of unknown function, DUF258 WEMBL PF05701.6 gi|529077529|ref|YP_008376532.1| - 0.056 11.9 0.4 0.097 11.1 0.2 1.3 1 0 0 1 1 1 0 Weak chloroplast movement under blue light Peptidase_S46 PF10459.4 gi|529077529|ref|YP_008376532.1| - 0.059 11.7 0.6 0.076 11.4 0.4 1.1 1 0 0 1 1 1 0 Peptidase S46 APP_E2 PF12925.2 gi|529077529|ref|YP_008376532.1| - 0.09 12.3 0.9 2.2 7.8 0.2 2.2 1 1 1 2 2 2 0 E2 domain of amyloid precursor protein MobB PF03205.9 gi|529077529|ref|YP_008376532.1| - 0.12 12.1 0.0 0.22 11.1 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B KTI12 PF08433.5 gi|529077529|ref|YP_008376532.1| - 0.12 11.5 0.1 0.26 10.4 0.0 1.6 2 0 0 2 2 2 0 Chromatin associated protein KTI12 6PF2K PF01591.13 gi|529077529|ref|YP_008376532.1| - 0.15 11.1 0.0 0.65 9.0 0.0 2.0 3 0 0 3 3 3 0 6-phosphofructo-2-kinase FUSC PF04632.7 gi|529077529|ref|YP_008376532.1| - 0.15 10.4 5.0 0.18 10.1 3.5 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family PemK PF02452.12 gi|529077530|ref|YP_008376533.1| - 9.8e-23 80.4 0.1 1.1e-22 80.3 0.1 1.0 1 0 0 1 1 1 1 PemK-like protein DUF1059 PF06348.6 gi|529077530|ref|YP_008376533.1| - 0.15 11.8 0.2 0.21 11.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1059) Antitoxin-MazE PF04014.13 gi|529077531|ref|YP_008376534.1| - 2.6e-11 42.9 2.4 3.5e-11 42.5 1.7 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE AAA PF00004.24 gi|529077532|ref|YP_008376535.1| - 2.3e-44 150.7 0.1 6.1e-44 149.4 0.1 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|529077532|ref|YP_008376535.1| - 3.1e-08 33.7 0.5 1e-07 32.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|529077532|ref|YP_008376535.1| - 1.9e-07 30.3 0.4 9.1e-07 28.1 0.0 2.1 3 0 0 3 3 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|529077532|ref|YP_008376535.1| - 6.3e-07 29.5 2.2 0.00045 20.2 0.0 3.3 2 1 2 4 4 4 1 AAA ATPase domain AAA_5 PF07728.9 gi|529077532|ref|YP_008376535.1| - 7.4e-07 28.9 0.8 3.9e-06 26.6 0.1 2.5 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|529077532|ref|YP_008376535.1| - 7.7e-07 29.3 1.6 3.2e-05 24.0 0.2 2.7 2 1 0 2 2 1 1 AAA domain AAA_17 PF13207.1 gi|529077532|ref|YP_008376535.1| - 3.2e-06 27.9 0.2 4.3e-05 24.3 0.0 2.6 3 0 0 3 3 3 1 AAA domain DUF904 PF06005.7 gi|529077532|ref|YP_008376535.1| - 0.00012 22.3 3.1 0.0015 18.8 2.5 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF904) AAA_33 PF13671.1 gi|529077532|ref|YP_008376535.1| - 0.00016 21.5 0.3 0.00078 19.3 0.0 2.4 3 0 0 3 3 2 1 AAA domain DUF815 PF05673.8 gi|529077532|ref|YP_008376535.1| - 0.00023 20.1 0.0 0.00042 19.3 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_14 PF13173.1 gi|529077532|ref|YP_008376535.1| - 0.00031 20.6 0.0 0.00061 19.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|529077532|ref|YP_008376535.1| - 0.00037 20.1 0.1 0.00096 18.8 0.1 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_28 PF13521.1 gi|529077532|ref|YP_008376535.1| - 0.00042 20.3 0.4 0.0034 17.3 0.0 2.5 2 0 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|529077532|ref|YP_008376535.1| - 0.0006 19.5 0.3 0.021 14.4 0.0 2.4 1 1 1 2 2 2 1 NACHT domain TIP49 PF06068.8 gi|529077532|ref|YP_008376535.1| - 0.00085 18.1 0.0 0.0017 17.1 0.0 1.5 1 0 0 1 1 1 1 TIP49 C-terminus IstB_IS21 PF01695.12 gi|529077532|ref|YP_008376535.1| - 0.0018 17.7 0.0 0.004 16.5 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein Sigma54_activat PF00158.21 gi|529077532|ref|YP_008376535.1| - 0.0018 17.7 0.1 0.027 13.9 0.1 2.5 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_18 PF13238.1 gi|529077532|ref|YP_008376535.1| - 0.0019 18.5 0.1 0.016 15.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.16 gi|529077532|ref|YP_008376535.1| - 0.0023 17.1 0.0 0.0044 16.2 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI ATG16 PF08614.6 gi|529077532|ref|YP_008376535.1| - 0.0039 17.0 0.9 0.0075 16.1 0.6 1.6 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) Zeta_toxin PF06414.7 gi|529077532|ref|YP_008376535.1| - 0.0039 16.2 0.2 0.015 14.4 0.0 2.0 2 0 0 2 2 2 1 Zeta toxin AAA_3 PF07726.6 gi|529077532|ref|YP_008376535.1| - 0.0061 16.1 0.1 0.023 14.2 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.1 gi|529077532|ref|YP_008376535.1| - 0.0074 16.3 0.1 0.032 14.2 0.0 2.1 2 1 0 2 2 2 1 Sigma-54 interaction domain CPT PF07931.7 gi|529077532|ref|YP_008376535.1| - 0.01 15.4 0.0 0.022 14.3 0.0 1.6 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein AAA_11 PF13086.1 gi|529077532|ref|YP_008376535.1| - 0.017 14.7 0.1 0.083 12.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|529077532|ref|YP_008376535.1| - 0.022 13.6 0.0 0.053 12.3 0.0 1.6 1 0 0 1 1 1 0 NB-ARC domain NTPase_1 PF03266.10 gi|529077532|ref|YP_008376535.1| - 0.024 14.3 1.2 0.51 10.0 0.2 2.9 2 1 1 3 3 3 0 NTPase RNA_helicase PF00910.17 gi|529077532|ref|YP_008376535.1| - 0.029 14.5 0.0 0.062 13.4 0.0 1.6 1 0 0 1 1 1 0 RNA helicase DUF3450 PF11932.3 gi|529077532|ref|YP_008376535.1| - 0.032 13.4 1.8 0.093 11.9 1.3 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) PhoH PF02562.11 gi|529077532|ref|YP_008376535.1| - 0.039 13.1 0.0 0.11 11.6 0.0 1.8 2 0 0 2 2 1 0 PhoH-like protein Torsin PF06309.6 gi|529077532|ref|YP_008376535.1| - 0.042 13.7 0.0 0.084 12.7 0.0 1.4 1 0 0 1 1 1 0 Torsin ApoO PF09769.4 gi|529077532|ref|YP_008376535.1| - 0.05 13.3 0.0 13 5.4 0.0 2.4 2 0 0 2 2 2 0 Apolipoprotein O AAA_25 PF13481.1 gi|529077532|ref|YP_008376535.1| - 0.052 12.9 8.5 0.21 10.9 0.1 3.6 3 1 1 4 4 4 0 AAA domain AAA_24 PF13479.1 gi|529077532|ref|YP_008376535.1| - 0.1 12.1 0.2 0.34 10.4 0.1 1.9 1 1 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|529077532|ref|YP_008376535.1| - 0.11 12.0 0.0 0.26 10.9 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Parvo_NS1 PF01057.12 gi|529077532|ref|YP_008376535.1| - 0.12 11.1 0.0 0.23 10.2 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 ABC_tran PF00005.22 gi|529077532|ref|YP_008376535.1| - 0.13 12.5 0.4 0.37 11.0 0.0 2.1 2 1 0 2 2 1 0 ABC transporter bZIP_2 PF07716.10 gi|529077532|ref|YP_008376535.1| - 0.13 12.0 6.8 0.27 11.0 1.0 2.5 1 1 1 2 2 2 0 Basic region leucine zipper KaiC PF06745.8 gi|529077532|ref|YP_008376535.1| - 0.16 11.0 5.6 0.29 10.2 0.0 3.1 3 1 1 4 4 3 0 KaiC AAA_23 PF13476.1 gi|529077532|ref|YP_008376535.1| - 0.61 10.3 4.0 4.5 7.5 0.0 2.8 3 1 0 3 3 3 0 AAA domain HALZ PF02183.13 gi|529077532|ref|YP_008376535.1| - 0.66 9.7 4.3 0.73 9.5 0.3 2.5 1 1 1 2 2 2 0 Homeobox associated leucine zipper Peptidase_M3 PF01432.15 gi|529077533|ref|YP_008376536.1| - 2.4e-67 227.9 2.4 2.4e-67 227.9 1.7 1.9 2 0 0 2 2 2 1 Peptidase family M3 Peptidase_M3_N PF08439.5 gi|529077533|ref|YP_008376536.1| - 5.2e-23 80.8 4.6 7.4e-23 80.3 0.1 3.6 4 1 0 4 4 4 1 Oligopeptidase F Peptidase_MA_2 PF13485.1 gi|529077533|ref|YP_008376536.1| - 0.0018 18.2 0.9 0.008 16.2 0.6 2.2 1 0 0 1 1 1 1 Peptidase MA superfamily DUF3038 PF11237.3 gi|529077533|ref|YP_008376536.1| - 0.011 15.5 0.4 0.52 10.1 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3038) Reprolysin_3 PF13582.1 gi|529077533|ref|YP_008376536.1| - 0.02 15.4 0.6 0.24 11.9 0.0 2.4 2 0 0 2 2 2 0 Metallo-peptidase family M12B Reprolysin-like RHH_1 PF01402.16 gi|529077534|ref|YP_008376537.1| - 0.00012 21.8 3.9 0.00052 19.7 0.0 2.8 2 1 1 3 3 3 1 Ribbon-helix-helix protein, copG family YagB_YeeU_YfjZ PF06154.6 gi|529077534|ref|YP_008376537.1| - 0.012 15.8 0.1 0.018 15.2 0.1 1.3 1 1 0 1 1 1 0 YagB/YeeU/YfjZ family PIN PF01850.16 gi|529077535|ref|YP_008376538.1| - 1.1e-07 32.2 0.4 1.2e-07 32.1 0.2 1.1 1 0 0 1 1 1 1 PIN domain DUF4390 PF14334.1 gi|529077535|ref|YP_008376538.1| - 0.027 13.6 0.0 0.036 13.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4390) Glyco_hydro_3 PF00933.16 gi|529077537|ref|YP_008376540.1| - 1.1e-74 251.1 0.0 1.5e-74 250.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.17 gi|529077537|ref|YP_008376540.1| - 5.2e-59 199.5 0.0 1.5e-58 198.0 0.0 1.8 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.1 gi|529077537|ref|YP_008376540.1| - 4.1e-13 49.0 0.0 1e-12 47.8 0.0 1.7 1 0 0 1 1 1 1 Fibronectin type III-like domain GETHR PF05671.6 gi|529077537|ref|YP_008376540.1| - 1.3 8.2 5.8 3 7.0 4.0 1.6 1 0 0 1 1 1 0 GETHR pentapeptide repeat (5 copies) IGPS PF00218.16 gi|529077539|ref|YP_008376542.1| - 3.2e-66 223.0 0.0 3.7e-66 222.7 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase FMN_dh PF01070.13 gi|529077539|ref|YP_008376542.1| - 1e-06 27.8 2.5 1.9e-06 26.9 1.7 1.4 1 0 0 1 1 1 1 FMN-dependent dehydrogenase His_biosynth PF00977.16 gi|529077539|ref|YP_008376542.1| - 1.2e-05 24.6 0.0 0.00054 19.3 0.0 2.3 2 1 0 2 2 2 1 Histidine biosynthesis protein NanE PF04131.9 gi|529077539|ref|YP_008376542.1| - 5.8e-05 22.1 0.4 0.00012 21.1 0.1 1.7 2 1 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase Amidohydro_3 PF07969.6 gi|529077539|ref|YP_008376542.1| - 0.0015 17.7 0.5 0.0026 17.0 0.4 1.3 1 0 0 1 1 1 1 Amidohydrolase family QRPTase_C PF01729.14 gi|529077539|ref|YP_008376542.1| - 0.0029 17.1 0.2 0.005 16.3 0.1 1.3 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain EAL PF00563.15 gi|529077539|ref|YP_008376542.1| - 0.0044 16.5 0.2 0.0062 16.0 0.2 1.2 1 0 0 1 1 1 1 EAL domain Trp_syntA PF00290.15 gi|529077539|ref|YP_008376542.1| - 0.0093 14.5 0.0 0.014 13.9 0.0 1.3 1 0 0 1 1 1 1 Tryptophan synthase alpha chain AP_endonuc_2 PF01261.19 gi|529077539|ref|YP_008376542.1| - 0.037 13.3 0.1 2 7.6 0.0 2.6 2 1 1 3 3 3 0 Xylose isomerase-like TIM barrel DHO_dh PF01180.16 gi|529077539|ref|YP_008376542.1| - 0.039 12.8 0.0 0.054 12.4 0.0 1.3 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase ThiG PF05690.9 gi|529077539|ref|YP_008376542.1| - 0.11 11.4 1.8 0.5 9.4 0.4 2.3 2 1 1 3 3 3 0 Thiazole biosynthesis protein ThiG PALP PF00291.20 gi|529077540|ref|YP_008376543.1| - 1.2e-37 129.8 0.4 1.7e-37 129.3 0.3 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Trp_syntA PF00290.15 gi|529077541|ref|YP_008376544.1| - 1.2e-91 305.8 0.0 1.5e-91 305.5 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain PcrB PF01884.12 gi|529077541|ref|YP_008376544.1| - 3.9e-06 26.2 0.4 4e-05 22.9 0.2 2.1 2 0 0 2 2 2 1 PcrB family His_biosynth PF00977.16 gi|529077541|ref|YP_008376544.1| - 0.00011 21.5 0.1 0.00023 20.5 0.1 1.5 2 0 0 2 2 2 1 Histidine biosynthesis protein FMN_dh PF01070.13 gi|529077541|ref|YP_008376544.1| - 0.0025 16.7 0.0 0.0039 16.0 0.0 1.2 1 0 0 1 1 1 1 FMN-dependent dehydrogenase PA PF02225.17 gi|529077541|ref|YP_008376544.1| - 0.0028 17.3 0.1 0.2 11.3 0.0 2.5 2 0 0 2 2 2 1 PA domain PucR PF07905.6 gi|529077541|ref|YP_008376544.1| - 0.0084 15.6 0.0 0.098 12.2 0.0 2.3 2 0 0 2 2 2 1 Purine catabolism regulatory protein-like family IGPS PF00218.16 gi|529077541|ref|YP_008376544.1| - 0.083 11.9 0.0 0.12 11.3 0.0 1.4 1 1 0 1 1 1 0 Indole-3-glycerol phosphate synthase DUF1396 PF07161.8 gi|529077542|ref|YP_008376545.1| - 0.00063 19.4 1.2 0.00083 19.0 0.8 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1396) LPAM_2 PF13627.1 gi|529077542|ref|YP_008376545.1| - 0.73 9.6 5.6 1.2 8.9 3.9 1.3 1 0 0 1 1 1 0 Prokaryotic lipoprotein-attachment site DeoC PF01791.4 gi|529077544|ref|YP_008376547.1| - 1.3e-41 142.4 1.4 1.6e-41 142.1 1.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase AP_endonuc_2 PF01261.19 gi|529077544|ref|YP_008376547.1| - 8.6e-06 25.1 0.7 1.7e-05 24.1 0.2 1.7 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel PucR PF07905.6 gi|529077544|ref|YP_008376547.1| - 0.039 13.5 0.0 5.7 6.5 0.0 2.6 2 1 0 2 2 2 0 Purine catabolism regulatory protein-like family DUF3197 PF11432.3 gi|529077544|ref|YP_008376547.1| - 0.044 13.7 0.5 4.1 7.4 0.0 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3197) ETF PF01012.16 gi|529077544|ref|YP_008376547.1| - 0.57 9.8 6.7 1.6 8.4 2.4 2.7 2 1 0 2 2 2 0 Electron transfer flavoprotein domain HTH_20 PF12840.2 gi|529077545|ref|YP_008376548.1| - 1.2e-14 53.8 0.0 2.2e-14 53.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|529077545|ref|YP_008376548.1| - 0.00016 21.0 0.0 0.00028 20.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|529077545|ref|YP_008376548.1| - 0.00021 20.8 0.0 0.00038 20.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|529077545|ref|YP_008376548.1| - 0.00047 19.7 0.5 0.0017 17.9 0.0 2.1 2 0 0 2 2 2 1 MarR family MgtE_N PF03448.12 gi|529077545|ref|YP_008376548.1| - 0.07 13.4 0.2 0.16 12.3 0.1 1.6 1 1 0 1 1 1 0 MgtE intracellular N domain DNA_Packaging_2 PF11123.3 gi|529077545|ref|YP_008376548.1| - 0.14 12.0 0.0 0.26 11.1 0.0 1.4 1 0 0 1 1 1 0 DNA packaging protein IL13 PF03487.8 gi|529077546|ref|YP_008376549.1| - 0.13 11.9 2.4 0.23 11.1 1.7 1.3 1 0 0 1 1 1 0 Interleukin-13 TrmB PF01978.14 gi|529077547|ref|YP_008376550.1| - 0.075 12.7 0.0 2.2 8.0 0.0 2.9 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB DHQS PF01959.11 gi|529077548|ref|YP_008376551.1| - 2.4e-146 487.0 4.3 2.7e-146 486.8 3.0 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase (EC 4.6.1.3) Hint_2 PF13403.1 gi|529077548|ref|YP_008376551.1| - 0.00036 20.4 1.4 0.016 15.1 0.1 3.2 3 0 0 3 3 3 1 Hint domain Hint PF01079.15 gi|529077548|ref|YP_008376551.1| - 0.0028 16.8 0.0 0.48 9.5 0.0 2.4 2 0 0 2 2 2 2 Hint module QRPTase_C PF01729.14 gi|529077548|ref|YP_008376551.1| - 0.041 13.4 1.2 0.22 11.0 0.1 2.3 2 0 0 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain TrkA_N PF02254.13 gi|529077548|ref|YP_008376551.1| - 0.36 10.8 3.2 21 5.1 0.1 3.0 3 0 0 3 3 3 0 TrkA-N domain zf-ribbon_3 PF13248.1 gi|529077549|ref|YP_008376552.1| - 5.5e-05 22.2 0.5 0.00011 21.3 0.3 1.5 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|529077549|ref|YP_008376552.1| - 0.00023 20.9 0.5 0.00039 20.1 0.4 1.3 1 0 0 1 1 1 1 Double zinc ribbon DNA_ligase_ZBD PF03119.11 gi|529077549|ref|YP_008376552.1| - 0.00063 19.3 2.1 0.14 11.9 0.1 2.2 2 0 0 2 2 2 2 NAD-dependent DNA ligase C4 zinc finger domain zf-NADH-PPase PF09297.6 gi|529077549|ref|YP_008376552.1| - 0.00069 19.0 0.2 0.085 12.3 0.1 2.3 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|529077549|ref|YP_008376552.1| - 0.0008 19.0 0.2 0.0013 18.3 0.1 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.1 gi|529077549|ref|YP_008376552.1| - 0.00097 18.5 1.1 0.021 14.2 0.8 2.2 1 1 1 2 2 2 2 zinc-ribbon domain TM2 PF05154.11 gi|529077549|ref|YP_008376552.1| - 0.0023 18.0 0.3 0.0039 17.3 0.2 1.3 1 0 0 1 1 1 1 TM2 domain Prok-RING_1 PF14446.1 gi|529077549|ref|YP_008376552.1| - 0.0077 15.9 0.6 0.011 15.4 0.4 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 UPF0547 PF10571.4 gi|529077549|ref|YP_008376552.1| - 0.013 15.1 2.1 0.087 12.5 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Nudix_N_2 PF14803.1 gi|529077549|ref|YP_008376552.1| - 0.014 15.0 0.6 4.4 7.0 0.0 2.3 2 0 0 2 2 2 0 Nudix N-terminal zf-IS66 PF13005.2 gi|529077549|ref|YP_008376552.1| - 0.031 14.2 2.8 0.12 12.3 0.4 2.3 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 Auto_anti-p27 PF06677.7 gi|529077549|ref|YP_008376552.1| - 0.037 13.7 0.7 0.065 13.0 0.5 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-C4_Topoisom PF01396.14 gi|529077549|ref|YP_008376552.1| - 0.042 13.3 1.3 0.7 9.4 0.2 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zinc-ribbons_6 PF07191.7 gi|529077549|ref|YP_008376552.1| - 0.046 13.5 1.0 0.085 12.6 0.7 1.4 1 1 0 1 1 1 0 zinc-ribbons DUF1232 PF06803.7 gi|529077549|ref|YP_008376552.1| - 0.069 12.5 1.4 0.12 11.8 0.4 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1232) TF_Zn_Ribbon PF08271.7 gi|529077549|ref|YP_008376552.1| - 0.076 12.3 0.9 0.13 11.6 0.6 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|529077549|ref|YP_008376552.1| - 0.081 12.8 2.9 2.2 8.2 1.9 2.2 1 1 1 2 2 2 0 Zinc ribbon domain A2L_zn_ribbon PF08792.5 gi|529077549|ref|YP_008376552.1| - 0.2 11.1 0.5 0.42 10.1 0.4 1.5 1 1 0 1 1 1 0 A2L zinc ribbon domain TerY-C PF15616.1 gi|529077549|ref|YP_008376552.1| - 0.32 10.9 2.3 3.8 7.4 1.6 2.0 1 1 0 1 1 1 0 TerY-C metal binding domain PhnA_Zn_Ribbon PF08274.7 gi|529077549|ref|YP_008376552.1| - 0.55 10.0 4.2 1.3 8.8 2.9 1.6 1 1 0 1 1 1 0 PhnA Zinc-Ribbon DHquinase_I PF01487.10 gi|529077550|ref|YP_008376553.1| - 9.2e-44 149.7 0.0 1.1e-43 149.5 0.0 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase MarR_2 PF12802.2 gi|529077551|ref|YP_008376554.1| - 1.6e-05 24.5 0.4 3.9e-05 23.2 0.0 1.9 2 1 1 3 3 3 1 MarR family HTH_IclR PF09339.5 gi|529077551|ref|YP_008376554.1| - 0.00012 21.6 0.0 0.00019 20.9 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|529077551|ref|YP_008376554.1| - 0.00062 19.4 0.5 0.0025 17.4 0.0 2.1 2 1 1 3 3 3 1 Sugar-specific transcriptional regulator TrmB Sulfolobus_pRN PF05584.6 gi|529077551|ref|YP_008376554.1| - 0.0019 18.1 0.0 0.0029 17.5 0.0 1.3 1 0 0 1 1 1 1 Sulfolobus plasmid regulatory protein MarR PF01047.17 gi|529077551|ref|YP_008376554.1| - 0.0036 16.9 0.0 0.0065 16.1 0.0 1.5 1 1 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|529077551|ref|YP_008376554.1| - 0.0096 15.7 0.0 0.02 14.6 0.0 1.5 2 0 0 2 2 2 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|529077551|ref|YP_008376554.1| - 0.02 15.0 0.0 0.034 14.2 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_27 PF13463.1 gi|529077551|ref|YP_008376554.1| - 0.03 14.6 0.0 0.05 13.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|529077551|ref|YP_008376554.1| - 0.03 13.6 0.0 0.059 12.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|529077551|ref|YP_008376554.1| - 0.032 13.8 0.0 0.05 13.2 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_34 PF13601.1 gi|529077551|ref|YP_008376554.1| - 0.042 13.8 0.0 0.067 13.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain Penicillinase_R PF03965.11 gi|529077551|ref|YP_008376554.1| - 0.065 13.3 0.0 0.13 12.3 0.0 1.7 1 1 0 1 1 1 0 Penicillinase repressor Fe_dep_repress PF01325.14 gi|529077551|ref|YP_008376554.1| - 0.073 13.0 0.0 0.18 11.7 0.0 1.7 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain GntR PF00392.16 gi|529077551|ref|YP_008376554.1| - 0.096 12.1 1.3 0.13 11.6 0.1 1.8 2 1 0 2 2 2 0 Bacterial regulatory proteins, gntR family N6_N4_Mtase PF01555.13 gi|529077552|ref|YP_008376555.1| - 3.3e-31 108.5 0.0 4.7e-31 108.0 0.0 1.2 1 0 0 1 1 1 1 DNA methylase Methyltransf_26 PF13659.1 gi|529077552|ref|YP_008376555.1| - 1.4e-11 44.4 0.2 6.2e-06 26.2 0.0 2.3 2 0 0 2 2 2 2 Methyltransferase domain UPF0020 PF01170.13 gi|529077552|ref|YP_008376555.1| - 0.00011 21.7 0.0 0.33 10.5 0.0 2.4 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.7 gi|529077552|ref|YP_008376555.1| - 0.071 13.6 0.2 1.7 9.1 0.0 2.6 3 0 0 3 3 3 0 Methyltransferase domain MCPsignal PF00015.16 gi|529077553|ref|YP_008376556.1| - 2.2e-55 187.5 52.4 6.3e-52 176.2 26.0 2.3 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Laminin_II PF06009.7 gi|529077553|ref|YP_008376556.1| - 0.00012 21.8 39.0 0.083 12.6 1.0 4.1 2 2 2 4 4 4 3 Laminin Domain II TPR_MLP1_2 PF07926.7 gi|529077553|ref|YP_008376556.1| - 0.0014 18.4 29.3 0.0071 16.0 5.3 2.7 2 1 0 2 2 2 1 TPR/MLP1/MLP2-like protein IncA PF04156.9 gi|529077553|ref|YP_008376556.1| - 0.0041 16.7 23.1 0.014 15.0 3.0 3.3 1 1 2 3 3 3 2 IncA protein DUF948 PF06103.6 gi|529077553|ref|YP_008376556.1| - 0.007 16.2 29.4 0.16 11.8 0.5 5.2 2 2 2 5 5 5 1 Bacterial protein of unknown function (DUF948) Syntaxin PF00804.20 gi|529077553|ref|YP_008376556.1| - 0.013 15.6 29.6 1.2 9.3 3.4 3.7 1 1 2 3 3 3 0 Syntaxin RmuC PF02646.11 gi|529077553|ref|YP_008376556.1| - 0.043 12.6 23.6 1.4 7.6 0.2 4.1 2 2 2 4 4 4 0 RmuC family DASH_Dad1 PF08649.5 gi|529077553|ref|YP_008376556.1| - 0.062 13.0 2.2 5.4 6.8 0.6 3.0 2 0 0 2 2 2 0 DASH complex subunit Dad1 DUF1664 PF07889.7 gi|529077553|ref|YP_008376556.1| - 0.062 13.0 26.5 1.4 8.6 0.9 4.2 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) CorA PF01544.13 gi|529077553|ref|YP_008376556.1| - 0.068 12.1 16.3 0.058 12.4 4.0 2.2 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein BLOC1_2 PF10046.4 gi|529077553|ref|YP_008376556.1| - 0.17 12.0 27.0 3.3 7.9 1.2 4.7 2 2 2 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Imm43 PF15602.1 gi|529077553|ref|YP_008376556.1| - 0.28 11.1 2.8 0.32 10.9 0.6 2.0 1 1 1 2 2 2 0 Immunity protein 43 Spc7 PF08317.6 gi|529077553|ref|YP_008376556.1| - 0.34 9.5 24.7 0.12 10.9 1.4 3.1 1 1 3 4 4 4 0 Spc7 kinetochore protein TMP_2 PF06791.8 gi|529077553|ref|YP_008376556.1| - 0.39 10.3 33.0 0.34 10.4 5.1 3.3 1 1 2 3 3 3 0 Prophage tail length tape measure protein Mnd1 PF03962.10 gi|529077553|ref|YP_008376556.1| - 0.4 10.3 23.6 1.2 8.7 6.7 2.3 1 1 0 2 2 2 0 Mnd1 family DUF2580 PF10824.3 gi|529077553|ref|YP_008376556.1| - 0.44 10.9 33.8 0.14 12.5 0.5 3.8 1 1 1 3 3 3 0 Protein of unknown function (DUF2580) Spectrin PF00435.16 gi|529077553|ref|YP_008376556.1| - 0.55 10.5 22.4 0.76 10.0 2.5 3.9 2 2 1 3 3 3 0 Spectrin repeat HisK_N PF09385.5 gi|529077553|ref|YP_008376556.1| - 0.65 9.6 6.9 0.1 12.1 0.8 2.4 2 1 1 3 3 3 0 Histidine kinase N terminal Laminin_I PF06008.9 gi|529077553|ref|YP_008376556.1| - 0.72 9.1 32.9 0.69 9.1 6.3 3.7 1 1 1 3 3 3 0 Laminin Domain I APG17 PF04108.7 gi|529077553|ref|YP_008376556.1| - 0.72 8.5 23.7 2.3 6.9 1.2 3.1 1 1 2 3 3 3 0 Autophagy protein Apg17 TMPIT PF07851.8 gi|529077553|ref|YP_008376556.1| - 1.1 8.2 16.4 0.21 10.6 1.6 2.9 2 1 1 3 3 3 0 TMPIT-like protein RBD-FIP PF09457.5 gi|529077553|ref|YP_008376556.1| - 1.3 8.8 5.7 4.7 7.0 0.4 3.5 3 0 0 3 3 3 0 FIP domain AAA_13 PF13166.1 gi|529077553|ref|YP_008376556.1| - 1.5 7.1 26.1 0.052 12.0 10.0 2.0 1 1 1 2 2 2 0 AAA domain COG2 PF06148.6 gi|529077553|ref|YP_008376556.1| - 1.6 8.5 26.7 8.1 6.3 1.4 4.7 2 2 2 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 MT0933_antitox PF14013.1 gi|529077553|ref|YP_008376556.1| - 2 8.5 25.8 18 5.5 2.1 4.8 3 1 0 3 3 2 0 MT0933-like antitoxin protein GAS PF13851.1 gi|529077553|ref|YP_008376556.1| - 2.2 7.4 15.9 2 7.5 1.6 2.6 2 1 0 2 2 2 0 Growth-arrest specific micro-tubule binding DivIVA PF05103.8 gi|529077553|ref|YP_008376556.1| - 2.2 8.3 36.4 4.5 7.3 4.4 4.1 1 1 2 3 3 3 0 DivIVA protein YjcZ PF13990.1 gi|529077553|ref|YP_008376556.1| - 2.3 7.3 15.2 5.9 5.9 0.6 3.1 1 1 2 3 3 3 0 YjcZ-like protein Aminotran_1_2 PF00155.16 gi|529077553|ref|YP_008376556.1| - 2.5 6.9 7.6 3.9 6.3 0.4 2.8 1 1 1 3 3 3 0 Aminotransferase class I and II Sec5 PF15469.1 gi|529077553|ref|YP_008376556.1| - 2.7 7.6 10.1 8.1 6.1 4.1 3.0 1 1 1 2 2 2 0 Exocyst complex component Sec5 V_ATPase_I PF01496.14 gi|529077553|ref|YP_008376556.1| - 2.8 5.7 19.0 11 3.7 12.4 2.1 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family Seryl_tRNA_N PF02403.17 gi|529077553|ref|YP_008376556.1| - 3.7 7.6 30.7 0.85 9.6 2.2 4.2 1 1 4 5 5 5 0 Seryl-tRNA synthetase N-terminal domain Fib_alpha PF08702.5 gi|529077553|ref|YP_008376556.1| - 3.8 7.6 22.6 7.5 6.6 1.6 4.0 1 1 3 4 4 4 0 Fibrinogen alpha/beta chain family DUF2408 PF10303.4 gi|529077553|ref|YP_008376556.1| - 4.1 7.5 15.8 0.5 10.4 1.0 3.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2408) Muted PF14942.1 gi|529077553|ref|YP_008376556.1| - 4.3 7.2 22.7 2.9 7.7 4.1 2.8 1 1 2 3 3 3 0 Organelle biogenesis, Muted-like protein Cauli_AT PF03233.8 gi|529077553|ref|YP_008376556.1| - 4.4 6.9 16.6 11 5.7 2.9 3.7 1 1 3 4 4 4 0 Aphid transmission protein Flu_NS2 PF00601.14 gi|529077553|ref|YP_008376556.1| - 4.4 7.5 7.9 6.7 7.0 0.1 3.8 2 2 2 4 4 4 0 Influenza non-structural protein (NS2) Tweety PF04906.8 gi|529077553|ref|YP_008376556.1| - 4.5 5.5 16.3 2.3 6.5 1.8 2.7 1 1 3 4 4 4 0 Tweety Dicistro_VP4 PF11492.3 gi|529077553|ref|YP_008376556.1| - 4.6 7.3 8.4 3 7.9 0.5 3.9 3 1 0 3 3 2 0 Cricket paralysis virus, VP4 T2SF PF00482.18 gi|529077553|ref|YP_008376556.1| - 4.8 7.1 12.9 1.3 8.9 0.5 3.3 2 1 1 3 3 3 0 Type II secretion system (T2SS), protein F Med9 PF07544.8 gi|529077553|ref|YP_008376556.1| - 5.5 6.8 13.6 4.4 7.1 0.9 3.9 2 2 1 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 DASH_Duo1 PF08651.5 gi|529077553|ref|YP_008376556.1| - 5.9 6.5 13.7 8.3 6.0 0.3 4.7 3 2 2 5 5 5 0 DASH complex subunit Duo1 DUF2203 PF09969.4 gi|529077553|ref|YP_008376556.1| - 7.8 6.7 23.2 3.2 7.9 1.2 3.8 1 1 3 4 4 4 0 Uncharacterized conserved protein (DUF2203) Reo_sigmaC PF04582.7 gi|529077553|ref|YP_008376556.1| - 8 5.5 24.9 4 6.5 4.3 2.8 1 1 2 3 3 3 0 Reovirus sigma C capsid protein TFIIB PF00382.14 gi|529077554|ref|YP_008376557.1| - 2.4e-40 136.1 0.3 7.2e-20 70.5 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|529077554|ref|YP_008376557.1| - 4.3e-18 64.3 5.5 2.9e-17 61.7 3.6 2.2 2 0 0 2 2 2 1 TFIIB zinc-binding A2L_zn_ribbon PF08792.5 gi|529077554|ref|YP_008376557.1| - 0.00085 18.7 0.8 0.0014 18.0 0.6 1.3 1 0 0 1 1 1 1 A2L zinc ribbon domain RRN7 PF11781.3 gi|529077554|ref|YP_008376557.1| - 0.0032 16.9 1.6 0.0057 16.1 1.1 1.4 1 0 0 1 1 1 1 RNA polymerase I-specific transcription initiation factor Rrn7 DZR PF12773.2 gi|529077554|ref|YP_008376557.1| - 0.0069 16.1 0.5 0.012 15.3 0.4 1.4 1 0 0 1 1 1 1 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|529077554|ref|YP_008376557.1| - 0.034 13.8 0.7 0.094 12.3 0.5 1.7 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Sigma70_r4 PF04545.11 gi|529077554|ref|YP_008376557.1| - 0.036 13.3 0.1 0.71 9.2 0.0 2.7 2 0 0 2 2 2 0 Sigma-70, region 4 zf-ribbon_3 PF13248.1 gi|529077554|ref|YP_008376557.1| - 0.046 12.9 4.0 0.21 10.8 2.9 1.9 1 1 2 3 3 3 0 zinc-ribbon domain GFA PF04828.9 gi|529077554|ref|YP_008376557.1| - 0.078 12.9 0.1 0.17 11.8 0.1 1.5 1 0 0 1 1 1 0 Glutathione-dependent formaldehyde-activating enzyme zf-C4_Topoisom PF01396.14 gi|529077554|ref|YP_008376557.1| - 0.12 11.9 0.4 0.12 11.9 0.3 1.5 1 1 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger RNA_POL_M_15KD PF02150.11 gi|529077554|ref|YP_008376557.1| - 0.17 11.6 0.7 0.33 10.6 0.5 1.5 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit Rubredoxin PF00301.15 gi|529077554|ref|YP_008376557.1| - 0.18 11.7 1.0 4.8 7.1 0.1 2.4 2 0 0 2 2 2 0 Rubredoxin Nudix_N_2 PF14803.1 gi|529077554|ref|YP_008376557.1| - 0.29 10.8 2.0 0.9 9.2 1.4 1.9 1 1 0 1 1 1 0 Nudix N-terminal Prim_Zn_Ribbon PF08273.7 gi|529077554|ref|YP_008376557.1| - 0.74 9.9 3.1 1.9 8.6 2.1 1.7 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase Zn-ribbon_8 PF09723.5 gi|529077554|ref|YP_008376557.1| - 2.3 8.2 5.0 7.3 6.6 0.5 2.4 1 1 1 2 2 2 0 Zinc ribbon domain UPF0104 PF03706.8 gi|529077555|ref|YP_008376558.1| - 7.5e-34 117.3 27.6 1.1e-33 116.7 19.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) Glycos_transf_2 PF00535.21 gi|529077555|ref|YP_008376558.1| - 1.6e-26 92.9 0.0 2.3e-26 92.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|529077555|ref|YP_008376558.1| - 1.5e-14 54.3 2.3 1.5e-14 54.3 1.6 1.9 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|529077555|ref|YP_008376558.1| - 4.7e-06 25.8 0.0 6.4e-06 25.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|529077555|ref|YP_008376558.1| - 0.0055 16.9 0.1 0.014 15.6 0.1 1.7 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.1 gi|529077555|ref|YP_008376558.1| - 0.024 14.3 4.2 0.025 14.2 0.7 2.5 2 1 1 3 3 3 0 Glycosyl transferase family group 2 MFS_1 PF07690.11 gi|529077556|ref|YP_008376559.1| - 1.3e-50 172.1 68.8 9.5e-39 133.0 25.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|529077556|ref|YP_008376559.1| - 1.3e-09 37.2 20.0 0.00011 20.8 3.6 3.3 2 2 1 3 3 3 3 Sugar (and other) transporter LacY_symp PF01306.14 gi|529077556|ref|YP_008376559.1| - 5e-07 28.6 6.0 5e-07 28.6 4.2 2.0 2 1 0 2 2 2 1 LacY proton/sugar symporter MFS_2 PF13347.1 gi|529077556|ref|YP_008376559.1| - 5.7e-06 24.9 14.4 5.7e-06 24.9 10.0 2.6 1 1 1 2 2 2 1 MFS/sugar transport protein DUF1228 PF06779.9 gi|529077556|ref|YP_008376559.1| - 6.9e-05 22.7 1.8 6.9e-05 22.7 1.2 3.7 4 1 0 4 4 4 1 Protein of unknown function (DUF1228) MFS_1_like PF12832.2 gi|529077556|ref|YP_008376559.1| - 0.00018 21.2 10.0 0.002 17.9 0.0 4.0 4 0 0 4 4 4 1 MFS_1 like family TRI12 PF06609.8 gi|529077556|ref|YP_008376559.1| - 0.0082 14.3 14.5 0.14 10.3 0.7 3.0 2 1 1 3 3 3 2 Fungal trichothecene efflux pump (TRI12) Radical_SAM PF04055.16 gi|529077557|ref|YP_008376560.1| - 5e-15 56.0 0.0 9.6e-14 51.8 0.0 2.8 3 0 0 3 3 3 1 Radical SAM superfamily HHH PF00633.18 gi|529077557|ref|YP_008376560.1| - 7e-06 25.4 0.0 2.7e-05 23.6 0.0 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|529077557|ref|YP_008376560.1| - 0.0002 21.2 0.0 0.00068 19.5 0.0 1.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif PsbU PF06514.6 gi|529077557|ref|YP_008376560.1| - 0.037 13.8 0.0 0.1 12.4 0.0 1.7 1 0 0 1 1 1 0 Photosystem II 12 kDa extrinsic protein (PsbU) HHH_5 PF14520.1 gi|529077557|ref|YP_008376560.1| - 0.042 14.0 0.0 0.14 12.3 0.0 1.9 1 0 0 1 1 1 0 Helix-hairpin-helix domain HSP20 PF00011.16 gi|529077558|ref|YP_008376561.1| - 4e-06 26.6 0.0 7.4e-06 25.7 0.0 1.5 1 1 0 1 1 1 1 Hsp20/alpha crystallin family Nop14 PF04147.7 gi|529077558|ref|YP_008376561.1| - 0.49 8.2 4.6 0.45 8.3 3.2 1.0 1 0 0 1 1 1 0 Nop14-like family NUDIX PF00293.23 gi|529077559|ref|YP_008376562.1| - 4.5e-18 65.2 0.0 6.3e-18 64.7 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain Zn-ribbon_8 PF09723.5 gi|529077562|ref|YP_008376565.1| - 0.0001 22.1 1.4 0.00013 21.8 1.0 1.2 1 0 0 1 1 1 1 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|529077562|ref|YP_008376565.1| - 0.00095 18.5 3.0 0.0089 15.4 2.1 2.1 1 1 0 1 1 1 1 zinc-ribbon domain zf-tcix PF14952.1 gi|529077562|ref|YP_008376565.1| - 0.0013 17.9 0.9 0.24 10.7 0.1 2.2 2 0 0 2 2 2 1 Putative treble-clef, zinc-finger, Zn-binding UPF0547 PF10571.4 gi|529077562|ref|YP_008376565.1| - 0.0016 18.0 1.3 0.085 12.5 0.1 2.1 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 zf-IS66 PF13005.2 gi|529077562|ref|YP_008376565.1| - 0.0022 17.9 1.1 0.42 10.6 0.1 2.2 2 0 0 2 2 2 1 zinc-finger binding domain of transposase IS66 Nudix_N_2 PF14803.1 gi|529077562|ref|YP_008376565.1| - 0.0031 17.1 2.0 0.13 11.9 0.1 2.2 2 0 0 2 2 2 1 Nudix N-terminal TF_Zn_Ribbon PF08271.7 gi|529077562|ref|YP_008376565.1| - 0.004 16.4 1.7 0.52 9.6 0.1 2.2 2 0 0 2 2 2 1 TFIIB zinc-binding DZR PF12773.2 gi|529077562|ref|YP_008376565.1| - 0.004 16.9 2.2 0.0084 15.9 1.5 1.5 1 1 0 1 1 1 1 Double zinc ribbon Prok-RING_1 PF14446.1 gi|529077562|ref|YP_008376565.1| - 0.005 16.5 2.5 0.017 14.8 1.6 1.8 1 1 0 1 1 1 1 Prokaryotic RING finger family 1 YhfH PF14149.1 gi|529077562|ref|YP_008376565.1| - 0.0056 16.4 1.3 0.69 9.7 0.1 2.2 2 0 0 2 2 2 1 YhfH-like protein HypA PF01155.14 gi|529077562|ref|YP_008376565.1| - 0.0058 16.3 0.5 0.0059 16.2 0.3 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zinc_ribbon_5 PF13719.1 gi|529077562|ref|YP_008376565.1| - 0.0071 15.9 0.2 3.4 7.3 0.1 2.1 2 0 0 2 2 2 1 zinc-ribbon domain DUF1451 PF07295.6 gi|529077562|ref|YP_008376565.1| - 0.013 15.2 0.3 0.015 15.0 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) zinc_ribbon_4 PF13717.1 gi|529077562|ref|YP_008376565.1| - 0.013 15.1 0.2 3.9 7.2 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-CHY PF05495.7 gi|529077562|ref|YP_008376565.1| - 0.016 15.3 0.1 0.018 15.1 0.1 1.1 1 0 0 1 1 1 0 CHY zinc finger zf-ISL3 PF14690.1 gi|529077562|ref|YP_008376565.1| - 0.018 15.0 0.6 6.1 6.9 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-ribbon_3 PF13248.1 gi|529077562|ref|YP_008376565.1| - 0.02 14.0 4.7 0.15 11.2 3.3 2.0 1 1 0 1 1 1 0 zinc-ribbon domain ADK_lid PF05191.9 gi|529077562|ref|YP_008376565.1| - 0.022 14.4 3.3 0.84 9.3 0.2 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid PhnA_Zn_Ribbon PF08274.7 gi|529077562|ref|YP_008376565.1| - 0.033 13.9 4.1 0.28 10.9 2.9 2.0 1 1 1 2 2 2 0 PhnA Zinc-Ribbon zf-C4_Topoisom PF01396.14 gi|529077562|ref|YP_008376565.1| - 0.041 13.4 2.1 2.4 7.7 0.2 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-NADH-PPase PF09297.6 gi|529077562|ref|YP_008376565.1| - 0.058 12.9 2.2 1.9 8.0 0.1 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain GFA PF04828.9 gi|529077562|ref|YP_008376565.1| - 0.069 13.1 1.5 0.31 11.0 0.0 1.9 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme RRN7 PF11781.3 gi|529077562|ref|YP_008376565.1| - 0.095 12.2 3.0 4.8 6.7 0.3 2.2 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 TFIIS_C PF01096.13 gi|529077562|ref|YP_008376565.1| - 0.11 12.1 2.0 9.3 5.9 0.0 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) OrfB_Zn_ribbon PF07282.6 gi|529077562|ref|YP_008376565.1| - 0.12 12.0 2.4 0.35 10.5 1.5 1.7 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-RING_3 PF14369.1 gi|529077562|ref|YP_008376565.1| - 0.12 12.4 1.8 0.23 11.5 1.2 1.5 1 1 1 2 2 2 0 zinc-finger GATA PF00320.22 gi|529077562|ref|YP_008376565.1| - 0.12 11.7 0.8 0.17 11.2 0.6 1.2 1 0 0 1 1 1 0 GATA zinc finger DUF983 PF06170.7 gi|529077562|ref|YP_008376565.1| - 0.16 12.1 2.4 4.8 7.3 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF983) CpXC PF14353.1 gi|529077562|ref|YP_008376565.1| - 0.19 11.7 0.6 6.3 6.7 0.0 2.1 2 0 0 2 2 2 0 CpXC protein zf-HYPF PF07503.7 gi|529077562|ref|YP_008376565.1| - 0.21 11.0 2.3 9.4 5.7 0.1 2.1 2 0 0 2 2 2 0 HypF finger Zn_Tnp_IS91 PF14319.1 gi|529077562|ref|YP_008376565.1| - 0.22 11.0 1.1 0.29 10.6 0.8 1.3 1 1 0 1 1 1 0 Transposase zinc-binding domain zf-dskA_traR PF01258.12 gi|529077562|ref|YP_008376565.1| - 0.24 11.2 5.7 2.9 7.7 0.4 2.2 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger zinc-ribbons_6 PF07191.7 gi|529077562|ref|YP_008376565.1| - 0.25 11.1 1.9 5 6.9 1.3 2.0 1 1 1 2 2 2 0 zinc-ribbons DUF1610 PF07754.6 gi|529077562|ref|YP_008376565.1| - 0.36 10.9 4.1 2.9 8.0 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) DUF35_N PF12172.3 gi|529077562|ref|YP_008376565.1| - 0.36 10.7 3.0 8.6 6.4 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DNA_RNApol_7kD PF03604.8 gi|529077562|ref|YP_008376565.1| - 0.59 9.6 5.6 0.82 9.1 0.5 2.2 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit A2L_zn_ribbon PF08792.5 gi|529077562|ref|YP_008376565.1| - 0.76 9.3 2.7 5.8 6.4 1.9 2.0 1 1 0 1 1 1 0 A2L zinc ribbon domain zf-C2H2_3 PF13878.1 gi|529077562|ref|YP_008376565.1| - 0.84 9.2 2.9 7.1 6.2 0.2 2.1 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO DNA_ligase_ZBD PF03119.11 gi|529077562|ref|YP_008376565.1| - 6.7 6.5 7.4 5.3 6.8 0.5 2.7 2 1 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DHH PF01368.15 gi|529077563|ref|YP_008376566.1| - 2.4e-16 59.7 0.0 3.2e-16 59.2 0.0 1.2 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|529077563|ref|YP_008376566.1| - 3.2e-08 33.1 0.9 9.9e-08 31.5 0.6 1.9 1 0 0 1 1 1 1 DHHA1 domain Sensor PF13796.1 gi|529077563|ref|YP_008376566.1| - 0.028 14.0 1.7 0.053 13.1 1.2 1.4 1 0 0 1 1 1 0 Putative sensor NAD_binding_10 PF13460.1 gi|529077564|ref|YP_008376567.1| - 1.4e-20 74.0 0.7 1.8e-20 73.7 0.5 1.1 1 0 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|529077564|ref|YP_008376567.1| - 5.2e-11 42.4 0.0 7.7e-10 38.5 0.0 2.0 1 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family TrkA_N PF02254.13 gi|529077564|ref|YP_008376567.1| - 9.8e-08 32.0 0.1 1.7e-07 31.2 0.1 1.4 1 0 0 1 1 1 1 TrkA-N domain 3Beta_HSD PF01073.14 gi|529077564|ref|YP_008376567.1| - 3.4e-07 29.2 0.0 9e-07 27.8 0.0 1.6 2 0 0 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family F420_oxidored PF03807.12 gi|529077564|ref|YP_008376567.1| - 6.6e-06 26.4 0.2 1.2e-05 25.6 0.1 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Pyr_redox PF00070.22 gi|529077564|ref|YP_008376567.1| - 0.00016 22.0 0.4 0.00029 21.1 0.3 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NmrA PF05368.8 gi|529077564|ref|YP_008376567.1| - 0.00046 19.5 0.1 0.00061 19.1 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family NAD_binding_2 PF03446.10 gi|529077564|ref|YP_008376567.1| - 0.00048 19.9 0.0 0.00073 19.4 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase RmlD_sub_bind PF04321.12 gi|529077564|ref|YP_008376567.1| - 0.00049 19.0 0.2 0.0015 17.4 0.1 1.6 2 0 0 2 2 2 1 RmlD substrate binding domain ApbA PF02558.11 gi|529077564|ref|YP_008376567.1| - 0.0005 19.5 0.1 0.00075 18.9 0.1 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.9 gi|529077564|ref|YP_008376567.1| - 0.001 18.4 0.2 0.0016 17.8 0.1 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Saccharop_dh PF03435.13 gi|529077564|ref|YP_008376567.1| - 0.0052 15.8 0.2 0.0069 15.4 0.2 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase DUF1731 PF08338.6 gi|529077564|ref|YP_008376567.1| - 0.01 15.3 0.0 0.023 14.1 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1731) 3HCDH_N PF02737.13 gi|529077564|ref|YP_008376567.1| - 0.011 15.4 0.3 0.018 14.7 0.2 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DAO PF01266.19 gi|529077564|ref|YP_008376567.1| - 0.011 14.6 2.1 0.011 14.6 1.4 2.1 1 1 1 2 2 2 0 FAD dependent oxidoreductase Rossmann-like PF10727.4 gi|529077564|ref|YP_008376567.1| - 0.019 14.6 0.4 0.034 13.8 0.2 1.4 1 0 0 1 1 1 0 Rossmann-like domain ThiF PF00899.16 gi|529077564|ref|YP_008376567.1| - 0.025 14.4 0.4 0.06 13.1 0.3 1.7 1 0 0 1 1 1 0 ThiF family AlaDh_PNT_C PF01262.16 gi|529077564|ref|YP_008376567.1| - 0.059 12.9 0.2 0.081 12.4 0.1 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain IlvN PF07991.7 gi|529077564|ref|YP_008376567.1| - 0.063 12.6 0.0 0.093 12.0 0.0 1.2 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain GFO_IDH_MocA PF01408.17 gi|529077564|ref|YP_008376567.1| - 0.11 13.0 0.2 0.2 12.1 0.1 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold DUF3412 PF11892.3 gi|529077565|ref|YP_008376568.1| - 0.048 13.5 0.1 1.5 8.6 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3412) Phosphodiest PF01663.17 gi|529077566|ref|YP_008376569.1| - 2.7e-59 201.3 0.1 3.1e-59 201.1 0.0 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.18 gi|529077566|ref|YP_008376569.1| - 0.25 10.4 2.7 0.36 9.9 0.5 2.1 2 0 0 2 2 2 0 Sulfatase Pyrophosphatase PF00719.14 gi|529077568|ref|YP_008376571.1| - 7.6e-56 187.8 0.7 8.7e-56 187.6 0.5 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase PadR PF03551.9 gi|529077569|ref|YP_008376572.1| - 1.2e-14 53.7 0.7 1.8e-14 53.2 0.5 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|529077569|ref|YP_008376572.1| - 0.00013 22.1 0.0 0.00022 21.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|529077569|ref|YP_008376572.1| - 0.00019 21.1 0.1 0.00032 20.4 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix Rio2_N PF09202.6 gi|529077569|ref|YP_008376572.1| - 0.0043 17.0 0.2 0.0054 16.7 0.1 1.3 1 1 0 1 1 1 1 Rio2, N-terminal DNA_pol3_alpha PF07733.7 gi|529077570|ref|YP_008376573.1| - 0.026 13.0 0.1 0.03 12.7 0.1 1.1 1 0 0 1 1 1 0 Bacterial DNA polymerase III alpha subunit RVT_3 PF13456.1 gi|529077571|ref|YP_008376574.1| - 1.5e-22 79.2 0.0 2.1e-22 78.6 0.0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.19 gi|529077571|ref|YP_008376574.1| - 1.2e-15 57.9 0.0 2.3e-15 57.0 0.0 1.4 1 0 0 1 1 1 1 RNase H Mac PF12464.3 gi|529077571|ref|YP_008376574.1| - 0.065 13.2 0.1 0.16 12.0 0.1 1.6 1 0 0 1 1 1 0 Maltose acetyltransferase PQQ_3 PF13570.1 gi|529077571|ref|YP_008376574.1| - 0.12 12.6 0.1 0.12 12.6 0.1 2.0 2 1 0 2 2 2 0 PQQ-like domain TrkA_C PF02080.16 gi|529077572|ref|YP_008376575.1| - 6.5e-13 48.0 0.2 1.3e-12 47.0 0.1 1.5 1 0 0 1 1 1 1 TrkA-C domain HTH_24 PF13412.1 gi|529077572|ref|YP_008376575.1| - 2.7e-12 45.8 0.0 5.2e-12 44.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|529077572|ref|YP_008376575.1| - 1.6e-09 37.1 0.1 4.2e-09 35.8 0.0 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|529077572|ref|YP_008376575.1| - 2.9e-08 33.2 0.0 3.9e-07 29.6 0.0 2.5 2 0 0 2 2 2 1 HTH domain MarR_2 PF12802.2 gi|529077572|ref|YP_008376575.1| - 4.3e-06 26.2 0.0 8.4e-06 25.3 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|529077572|ref|YP_008376575.1| - 1.1e-05 25.0 0.0 2.1e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|529077572|ref|YP_008376575.1| - 4.3e-05 23.2 0.0 9.1e-05 22.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|529077572|ref|YP_008376575.1| - 4.8e-05 22.8 0.0 0.00012 21.5 0.0 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain MarR PF01047.17 gi|529077572|ref|YP_008376575.1| - 8.5e-05 22.1 0.0 0.00016 21.3 0.0 1.4 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|529077572|ref|YP_008376575.1| - 0.00021 21.1 0.0 0.00044 20.1 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_28 PF13518.1 gi|529077572|ref|YP_008376575.1| - 0.00023 21.0 0.0 0.0007 19.5 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|529077572|ref|YP_008376575.1| - 0.00026 21.0 0.0 0.00059 19.9 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_IclR PF09339.5 gi|529077572|ref|YP_008376575.1| - 0.00077 18.9 0.0 0.0018 17.8 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_23 PF13384.1 gi|529077572|ref|YP_008376575.1| - 0.0017 17.9 0.0 0.0044 16.6 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_27 PF13463.1 gi|529077572|ref|YP_008376575.1| - 0.0019 18.4 0.1 0.0062 16.8 0.0 1.9 2 0 0 2 2 1 1 Winged helix DNA-binding domain GntR PF00392.16 gi|529077572|ref|YP_008376575.1| - 0.0033 16.8 0.0 0.012 15.0 0.0 1.9 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_Tnp_ISL3 PF13542.1 gi|529077572|ref|YP_008376575.1| - 0.0061 15.7 0.0 0.052 12.7 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_1 PF00126.22 gi|529077572|ref|YP_008376575.1| - 0.013 15.2 0.1 0.041 13.6 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family TrmB PF01978.14 gi|529077572|ref|YP_008376575.1| - 0.016 14.8 0.0 0.038 13.6 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Sigma70_r4_2 PF08281.7 gi|529077572|ref|YP_008376575.1| - 0.018 14.5 0.0 0.068 12.6 0.0 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 HrcA_DNA-bdg PF03444.10 gi|529077572|ref|YP_008376575.1| - 0.022 14.1 0.0 0.041 13.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_Tnp_Tc3_2 PF01498.13 gi|529077572|ref|YP_008376575.1| - 0.024 14.6 0.0 0.1 12.6 0.0 2.0 2 0 0 2 2 2 0 Transposase HTH_29 PF13551.1 gi|529077572|ref|YP_008376575.1| - 0.038 14.1 0.0 0.083 13.0 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn helix HTH_10 PF04967.7 gi|529077572|ref|YP_008376575.1| - 0.063 12.8 0.1 0.16 11.5 0.0 1.7 2 0 0 2 2 1 0 HTH DNA binding domain FUR PF01475.14 gi|529077572|ref|YP_008376575.1| - 0.086 12.7 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family RPA_C PF08784.6 gi|529077572|ref|YP_008376575.1| - 0.095 13.1 0.0 0.35 11.3 0.0 1.9 2 0 0 2 2 2 0 Replication protein A C terminal HTH_12 PF08461.5 gi|529077572|ref|YP_008376575.1| - 0.11 12.1 0.2 4.2 7.1 0.0 2.8 2 1 0 2 2 2 0 Ribonuclease R winged-helix domain HTH_36 PF13730.1 gi|529077572|ref|YP_008376575.1| - 0.13 12.4 0.0 0.4 10.8 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain TrkA_N PF02254.13 gi|529077573|ref|YP_008376576.1| - 1.7e-26 92.5 2.6 2.7e-26 91.8 1.8 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|529077573|ref|YP_008376576.1| - 1.3e-14 53.5 0.8 6e-14 51.3 0.1 2.1 2 0 0 2 2 2 1 TrkA-C domain F420_oxidored PF03807.12 gi|529077573|ref|YP_008376576.1| - 1.4e-05 25.3 0.4 3.2e-05 24.2 0.1 1.7 2 0 0 2 2 1 1 NADP oxidoreductase coenzyme F420-dependent Saccharop_dh PF03435.13 gi|529077573|ref|YP_008376576.1| - 2.8e-05 23.2 0.2 3.6e-05 22.9 0.1 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase XdhC_C PF13478.1 gi|529077573|ref|YP_008376576.1| - 4.2e-05 23.8 0.1 6e-05 23.3 0.1 1.3 1 0 0 1 1 1 1 XdhC Rossmann domain NAD_binding_7 PF13241.1 gi|529077573|ref|YP_008376576.1| - 0.00013 22.1 0.6 0.00021 21.4 0.1 1.6 2 0 0 2 2 1 1 Putative NAD(P)-binding NAD_binding_10 PF13460.1 gi|529077573|ref|YP_008376576.1| - 0.00037 20.5 0.4 0.00082 19.4 0.2 1.6 2 0 0 2 2 2 1 NADH(P)-binding 3HCDH_N PF02737.13 gi|529077573|ref|YP_008376576.1| - 0.00069 19.3 0.3 0.001 18.7 0.2 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ThiF PF00899.16 gi|529077573|ref|YP_008376576.1| - 0.00074 19.3 2.1 0.14 11.9 0.2 2.3 1 1 1 2 2 2 2 ThiF family Shikimate_DH PF01488.15 gi|529077573|ref|YP_008376576.1| - 0.001 19.2 0.3 0.0015 18.6 0.2 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Pyr_redox PF00070.22 gi|529077573|ref|YP_008376576.1| - 0.001 19.3 0.2 0.013 15.8 0.1 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase PEP-utilizers PF00391.18 gi|529077573|ref|YP_008376576.1| - 0.0013 18.2 0.1 0.004 16.6 0.0 1.9 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain NmrA PF05368.8 gi|529077573|ref|YP_008376576.1| - 0.0067 15.7 0.2 0.012 14.9 0.1 1.4 1 1 0 1 1 1 1 NmrA-like family NAD_binding_2 PF03446.10 gi|529077573|ref|YP_008376576.1| - 0.0089 15.8 0.1 0.012 15.4 0.1 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.11 gi|529077573|ref|YP_008376576.1| - 0.011 15.1 0.1 0.018 14.5 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA GFO_IDH_MocA PF01408.17 gi|529077573|ref|YP_008376576.1| - 0.014 15.8 0.5 0.13 12.7 0.4 2.1 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold UDPG_MGDP_dh_N PF03721.9 gi|529077573|ref|YP_008376576.1| - 0.022 14.1 0.1 0.033 13.5 0.1 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ADH_zinc_N PF00107.21 gi|529077573|ref|YP_008376576.1| - 0.033 13.7 0.1 2 7.9 0.2 2.5 1 1 1 2 2 2 0 Zinc-binding dehydrogenase 2-Hacid_dh_C PF02826.14 gi|529077573|ref|YP_008376576.1| - 0.045 12.9 0.0 0.081 12.0 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KR PF08659.5 gi|529077573|ref|YP_008376576.1| - 0.089 12.4 0.1 0.12 12.0 0.1 1.2 1 0 0 1 1 1 0 KR domain NAD_Gly3P_dh_N PF01210.18 gi|529077573|ref|YP_008376576.1| - 0.096 12.4 0.1 0.16 11.7 0.1 1.5 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Epimerase PF01370.16 gi|529077573|ref|YP_008376576.1| - 0.12 11.8 0.1 0.18 11.1 0.1 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Sorting_nexin PF03700.8 gi|529077573|ref|YP_008376576.1| - 0.18 11.9 1.5 0.42 10.7 0.3 2.0 3 0 0 3 3 3 0 Sorting nexin, N-terminal domain TrkH PF02386.11 gi|529077574|ref|YP_008376577.1| - 3.3e-54 183.8 10.1 1.9e-52 178.0 4.8 2.2 2 0 0 2 2 2 2 Cation transport protein DUF1700 PF08006.6 gi|529077574|ref|YP_008376577.1| - 3.5 6.8 5.1 3.5 6.8 0.4 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1700) TrkA_N PF02254.13 gi|529077575|ref|YP_008376578.1| - 4.2e-26 91.2 1.2 7.5e-26 90.4 0.8 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|529077575|ref|YP_008376578.1| - 3.7e-13 48.8 0.6 1.4e-12 47.0 0.1 2.1 2 0 0 2 2 2 1 TrkA-C domain NAD_binding_10 PF13460.1 gi|529077575|ref|YP_008376578.1| - 6.1e-06 26.3 0.1 1.1e-05 25.5 0.1 1.4 1 0 0 1 1 1 1 NADH(P)-binding Saccharop_dh PF03435.13 gi|529077575|ref|YP_008376578.1| - 2e-05 23.7 0.5 2.7e-05 23.3 0.3 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase NmrA PF05368.8 gi|529077575|ref|YP_008376578.1| - 8.6e-05 21.9 0.2 0.00024 20.4 0.1 1.7 1 1 1 2 2 2 1 NmrA-like family Shikimate_DH PF01488.15 gi|529077575|ref|YP_008376578.1| - 0.0002 21.4 0.3 0.0003 20.9 0.2 1.4 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase DapB_N PF01113.15 gi|529077575|ref|YP_008376578.1| - 0.00094 19.0 0.2 0.0015 18.4 0.1 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus 3HCDH_N PF02737.13 gi|529077575|ref|YP_008376578.1| - 0.0038 16.9 0.1 0.0059 16.2 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|529077575|ref|YP_008376578.1| - 0.0039 16.7 0.1 0.0075 15.8 0.1 1.5 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain DAO PF01266.19 gi|529077575|ref|YP_008376578.1| - 0.0065 15.4 0.1 0.0085 15.0 0.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase MoeA_C PF03454.10 gi|529077575|ref|YP_008376578.1| - 0.013 15.4 0.0 0.035 14.0 0.0 1.7 1 0 0 1 1 1 0 MoeA C-terminal region (domain IV) NAD_binding_8 PF13450.1 gi|529077575|ref|YP_008376578.1| - 0.013 15.4 0.0 0.034 14.1 0.0 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.1 gi|529077575|ref|YP_008376578.1| - 0.02 15.1 0.1 0.034 14.3 0.1 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding ApbA PF02558.11 gi|529077575|ref|YP_008376578.1| - 0.063 12.7 0.1 0.15 11.4 0.0 1.7 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Pyr_redox PF00070.22 gi|529077575|ref|YP_008376578.1| - 0.11 12.8 0.3 0.29 11.5 0.2 1.8 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Usp PF00582.21 gi|529077576|ref|YP_008376579.1| - 1.3e-10 41.5 10.9 2.6e-08 34.1 1.1 2.5 2 0 0 2 2 2 2 Universal stress protein family TrkH PF02386.11 gi|529077577|ref|YP_008376580.1| - 2.5e-13 49.3 0.1 2.5e-13 49.3 0.0 1.0 1 0 0 1 1 1 1 Cation transport protein TrkA_N PF02254.13 gi|529077578|ref|YP_008376581.1| - 3.3e-29 101.2 2.0 4.5e-29 100.7 0.7 1.7 2 0 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.16 gi|529077578|ref|YP_008376581.1| - 3.1e-17 61.9 1.5 7.5e-16 57.4 0.1 2.4 2 0 0 2 2 2 1 TrkA-C domain Saccharop_dh PF03435.13 gi|529077578|ref|YP_008376581.1| - 8.2e-07 28.3 0.3 1.2e-06 27.8 0.2 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase F420_oxidored PF03807.12 gi|529077578|ref|YP_008376581.1| - 8.4e-07 29.3 0.5 2e-06 28.1 0.1 2.0 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Pyr_redox PF00070.22 gi|529077578|ref|YP_008376581.1| - 5.3e-06 26.7 0.2 0.00072 19.9 0.1 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.1 gi|529077578|ref|YP_008376581.1| - 8e-06 26.0 0.5 2.2e-05 24.6 0.1 1.8 2 0 0 2 2 2 1 Putative NAD(P)-binding XdhC_C PF13478.1 gi|529077578|ref|YP_008376581.1| - 1.1e-05 25.7 0.1 1.8e-05 25.0 0.1 1.3 1 0 0 1 1 1 1 XdhC Rossmann domain Shikimate_DH PF01488.15 gi|529077578|ref|YP_008376581.1| - 4.6e-05 23.5 0.2 7.2e-05 22.9 0.1 1.5 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_10 PF13460.1 gi|529077578|ref|YP_008376581.1| - 8.3e-05 22.6 1.1 0.00016 21.7 0.3 1.7 2 0 0 2 2 2 1 NADH(P)-binding 3HCDH_N PF02737.13 gi|529077578|ref|YP_008376581.1| - 0.00028 20.5 0.2 0.00041 20.0 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PEP-utilizers PF00391.18 gi|529077578|ref|YP_008376581.1| - 0.0023 17.4 0.7 0.023 14.2 0.0 2.6 3 0 0 3 3 3 1 PEP-utilising enzyme, mobile domain NAD_binding_2 PF03446.10 gi|529077578|ref|YP_008376581.1| - 0.0028 17.5 0.1 0.0065 16.3 0.0 1.7 1 1 1 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NmrA PF05368.8 gi|529077578|ref|YP_008376581.1| - 0.0032 16.7 0.2 0.0069 15.6 0.1 1.5 1 1 0 1 1 1 1 NmrA-like family GFO_IDH_MocA PF01408.17 gi|529077578|ref|YP_008376581.1| - 0.0041 17.6 0.1 0.011 16.2 0.1 1.7 1 1 1 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold UDPG_MGDP_dh_N PF03721.9 gi|529077578|ref|YP_008376581.1| - 0.015 14.7 0.2 0.086 12.2 0.1 2.0 1 1 1 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Peripla_BP_3 PF13377.1 gi|529077578|ref|YP_008376581.1| - 0.017 15.1 0.7 0.023 14.6 0.1 1.5 2 0 0 2 2 1 0 Periplasmic binding protein-like domain ApbA PF02558.11 gi|529077578|ref|YP_008376581.1| - 0.017 14.5 0.0 0.026 13.9 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA ThiF PF00899.16 gi|529077578|ref|YP_008376581.1| - 0.017 14.9 1.3 3.2 7.5 0.1 2.4 1 1 1 2 2 2 0 ThiF family 2-Hacid_dh_C PF02826.14 gi|529077578|ref|YP_008376581.1| - 0.021 13.9 0.0 0.034 13.3 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ADH_zinc_N PF00107.21 gi|529077578|ref|YP_008376581.1| - 0.024 14.1 0.0 4.2 6.9 0.0 2.3 1 1 1 2 2 2 0 Zinc-binding dehydrogenase KR PF08659.5 gi|529077578|ref|YP_008376581.1| - 0.071 12.7 0.1 0.096 12.3 0.1 1.2 1 0 0 1 1 1 0 KR domain CPSase_L_chain PF00289.17 gi|529077578|ref|YP_008376581.1| - 0.089 12.9 0.2 0.21 11.7 0.1 1.7 1 1 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|529077578|ref|YP_008376581.1| - 0.094 12.4 0.1 0.15 11.7 0.0 1.4 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Epimerase PF01370.16 gi|529077578|ref|YP_008376581.1| - 0.12 11.7 0.1 0.22 10.9 0.1 1.4 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family TrkH PF02386.11 gi|529077579|ref|YP_008376582.1| - 1.7e-61 207.7 15.6 1.3e-60 204.8 6.9 2.1 1 1 1 2 2 2 2 Cation transport protein TFIIB PF00382.14 gi|529077581|ref|YP_008376584.1| - 4.1e-49 164.2 2.4 8.3e-26 89.5 0.2 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|529077581|ref|YP_008376584.1| - 2.2e-19 68.5 3.6 4.3e-19 67.5 2.5 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding TerY-C PF15616.1 gi|529077581|ref|YP_008376584.1| - 0.01 15.7 0.2 0.027 14.4 0.1 1.7 1 0 0 1 1 1 0 TerY-C metal binding domain HTH_23 PF13384.1 gi|529077581|ref|YP_008376584.1| - 0.01 15.4 0.4 0.6 9.8 0.0 3.3 3 0 0 3 3 3 0 Homeodomain-like domain A2L_zn_ribbon PF08792.5 gi|529077581|ref|YP_008376584.1| - 0.015 14.7 0.7 0.033 13.6 0.5 1.6 1 0 0 1 1 1 0 A2L zinc ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|529077581|ref|YP_008376584.1| - 0.022 14.5 2.2 0.045 13.5 1.5 1.5 1 0 0 1 1 1 0 PhnA Zinc-Ribbon Lar_restr_allev PF14354.1 gi|529077581|ref|YP_008376584.1| - 0.036 14.3 0.5 0.13 12.6 0.4 1.9 1 0 0 1 1 1 0 Restriction alleviation protein Lar Sigma70_r4 PF04545.11 gi|529077581|ref|YP_008376584.1| - 0.049 12.9 2.5 0.3 10.4 0.0 3.3 3 1 0 3 3 3 0 Sigma-70, region 4 HARE-HTH PF05066.8 gi|529077581|ref|YP_008376584.1| - 0.055 13.8 0.0 2.4 8.5 0.0 2.4 2 0 0 2 2 2 0 HB1, ASXL, restriction endonuclease HTH domain zf-ribbon_3 PF13248.1 gi|529077581|ref|YP_008376584.1| - 0.057 12.6 1.9 0.17 11.1 1.3 1.8 1 1 0 1 1 1 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|529077581|ref|YP_008376584.1| - 0.1 12.2 1.3 0.43 10.2 0.4 2.2 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zf-C4_Topoisom PF01396.14 gi|529077581|ref|YP_008376584.1| - 0.55 9.7 2.6 0.27 10.7 0.1 1.8 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Zn-ribbon_8 PF09723.5 gi|529077581|ref|YP_008376584.1| - 0.93 9.4 4.8 1.3 9.0 0.6 2.5 1 1 0 2 2 2 0 Zinc ribbon domain Trm112p PF03966.11 gi|529077581|ref|YP_008376584.1| - 0.98 9.8 3.9 26 5.2 2.7 2.7 1 1 0 1 1 1 0 Trm112p-like protein DUF973 PF06157.6 gi|529077582|ref|YP_008376585.1| - 0.0047 15.9 0.2 0.0057 15.6 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF973) DUF3522 PF12036.3 gi|529077582|ref|YP_008376585.1| - 0.0072 16.1 0.1 0.01 15.6 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3522) ECF-ribofla_trS PF07155.7 gi|529077582|ref|YP_008376585.1| - 0.044 13.5 0.1 0.052 13.2 0.0 1.2 1 0 0 1 1 1 0 ECF-type riboflavin transporter, S component DUF4117 PF13491.1 gi|529077582|ref|YP_008376585.1| - 0.31 10.4 2.9 0.11 11.8 0.3 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4117) DUF3082 PF11282.3 gi|529077582|ref|YP_008376585.1| - 0.46 10.5 6.3 1 9.4 1.2 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF3082) HTH_20 PF12840.2 gi|529077583|ref|YP_008376586.1| - 1.6e-06 27.8 0.3 2.1e-06 27.4 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|529077583|ref|YP_008376586.1| - 0.00026 20.3 0.0 0.00043 19.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|529077583|ref|YP_008376586.1| - 0.00095 18.7 0.0 0.0017 17.9 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|529077583|ref|YP_008376586.1| - 0.0013 18.3 0.0 0.0023 17.5 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_AsnC-type PF13404.1 gi|529077583|ref|YP_008376586.1| - 0.0037 16.7 3.0 0.011 15.2 2.1 1.8 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_27 PF13463.1 gi|529077583|ref|YP_008376586.1| - 0.021 15.1 0.0 0.037 14.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain PadR PF03551.9 gi|529077583|ref|YP_008376586.1| - 0.025 14.3 0.0 0.035 13.8 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family TrmB PF01978.14 gi|529077583|ref|YP_008376586.1| - 0.034 13.8 0.0 0.048 13.3 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|529077583|ref|YP_008376586.1| - 0.054 13.0 0.0 0.085 12.4 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain Chlor_dismutase PF06778.7 gi|529077584|ref|YP_008376587.1| - 1.4e-52 178.1 0.1 4.2e-52 176.6 0.0 1.9 2 0 0 2 2 2 1 Chlorite dismutase ABM PF03992.11 gi|529077584|ref|YP_008376587.1| - 1.1e-09 38.2 0.1 1.1e-09 38.2 0.1 3.5 3 0 0 3 3 3 1 Antibiotic biosynthesis monooxygenase NifU_N PF01592.11 gi|529077586|ref|YP_008376589.1| - 3e-27 95.0 0.1 3.4e-27 94.8 0.1 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain bPH_3 PF14470.1 gi|529077587|ref|YP_008376590.1| - 0.0013 18.9 0.0 0.0023 18.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial PH domain zf-ZPR1 PF03367.8 gi|529077587|ref|YP_008376590.1| - 0.37 9.9 4.0 5.1 6.2 0.2 2.4 2 0 0 2 2 2 0 ZPR1 zinc-finger domain AATF-Che1 PF13339.1 gi|529077587|ref|YP_008376590.1| - 2.9 8.0 7.4 2.2 8.4 0.3 2.9 2 1 1 3 3 3 0 Apoptosis antagonizing transcription factor Phasin PF05597.6 gi|529077587|ref|YP_008376590.1| - 3.6 7.3 13.7 0.46 10.2 1.9 3.7 3 1 1 4 4 4 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Pro_CA PF00484.14 gi|529077587|ref|YP_008376590.1| - 8 6.4 7.2 23 4.9 1.0 3.4 2 2 1 3 3 3 0 Carbonic anhydrase DUF4404 PF14357.1 gi|529077587|ref|YP_008376590.1| - 8.2 6.9 14.2 0.26 11.7 1.1 3.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4404) Aminotran_5 PF00266.14 gi|529077588|ref|YP_008376591.1| - 3.1e-150 500.0 0.1 3.6e-150 499.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|529077588|ref|YP_008376591.1| - 4.7e-11 42.3 1.1 7.2e-11 41.7 0.8 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|529077588|ref|YP_008376591.1| - 2.9e-09 36.4 0.1 6.3e-08 32.1 0.1 2.0 2 0 0 2 2 2 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|529077588|ref|YP_008376591.1| - 3.6e-05 22.2 0.0 5.4e-05 21.6 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme SelA PF03841.8 gi|529077588|ref|YP_008376591.1| - 0.013 14.2 0.0 0.035 12.8 0.0 1.5 1 1 0 1 1 1 0 L-seryl-tRNA selenium transferase Pyridoxal_deC PF00282.14 gi|529077588|ref|YP_008376591.1| - 0.14 10.5 0.1 0.24 9.7 0.1 1.3 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain TrbC PF04956.8 gi|529077589|ref|YP_008376592.1| - 0.41 10.6 4.4 1.1 9.3 3.0 1.7 1 1 0 1 1 1 0 TrbC/VIRB2 family Sensor PF13796.1 gi|529077589|ref|YP_008376592.1| - 0.99 8.9 9.6 2.2 7.8 6.7 1.5 1 1 0 1 1 1 0 Putative sensor EssA PF10661.4 gi|529077589|ref|YP_008376592.1| - 1.1 8.9 4.0 2.3 7.8 0.1 2.0 1 1 1 2 2 2 0 WXG100 protein secretion system (Wss), protein EssA DoxX PF07681.7 gi|529077590|ref|YP_008376593.1| - 3.5e-09 36.9 6.8 3.5e-09 36.9 4.7 2.0 2 0 0 2 2 2 1 DoxX DoxD PF04173.8 gi|529077590|ref|YP_008376593.1| - 3.8e-07 29.9 9.0 6.7e-07 29.1 6.2 1.4 1 1 0 1 1 1 1 TQO small subunit DoxD NUDIX PF00293.23 gi|529077591|ref|YP_008376594.1| - 5.3e-13 48.7 0.1 6.8e-13 48.4 0.1 1.2 1 0 0 1 1 1 1 NUDIX domain AA_kinase PF00696.23 gi|529077592|ref|YP_008376595.1| - 5e-49 167.0 3.9 8.1e-49 166.3 1.0 2.0 2 0 0 2 2 2 1 Amino acid kinase family ACT_7 PF13840.1 gi|529077592|ref|YP_008376595.1| - 1.9e-16 59.3 0.4 1.5e-07 30.7 0.0 2.7 2 0 0 2 2 2 2 ACT domain ACT PF01842.20 gi|529077592|ref|YP_008376595.1| - 5.7e-09 35.2 0.7 0.00036 19.9 0.2 3.0 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.1 gi|529077592|ref|YP_008376595.1| - 0.0029 17.8 0.3 0.19 12.0 0.1 2.5 2 0 0 2 2 2 1 ACT domain ACT_6 PF13740.1 gi|529077592|ref|YP_008376595.1| - 0.057 13.1 1.5 1.7 8.4 0.1 2.9 3 0 0 3 3 3 0 ACT domain Pyridox_oxidase PF01243.15 gi|529077592|ref|YP_008376595.1| - 0.084 12.8 0.0 7.9 6.5 0.0 2.4 2 0 0 2 2 2 0 Pyridoxamine 5'-phosphate oxidase SBP_bac_5 PF00496.17 gi|529077593|ref|YP_008376596.1| - 1.5e-47 162.2 0.4 6.4e-42 143.7 0.1 2.1 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle Toprim_3 PF13362.1 gi|529077593|ref|YP_008376596.1| - 0.035 14.3 0.1 5.1 7.3 0.0 2.5 2 0 0 2 2 2 0 Toprim domain PAP2 PF01569.16 gi|529077594|ref|YP_008376597.1| - 7.6e-13 48.2 4.8 7.6e-13 48.2 3.4 2.2 2 1 1 3 3 3 1 PAP2 superfamily PAP2_3 PF14378.1 gi|529077594|ref|YP_008376597.1| - 2.3e-08 33.8 8.5 2.3e-08 33.8 5.9 1.7 2 0 0 2 2 2 1 PAP2 superfamily Radical_SAM PF04055.16 gi|529077595|ref|YP_008376598.1| - 1.7e-06 28.3 0.2 0.00012 22.2 0.1 2.4 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|529077595|ref|YP_008376598.1| - 1.1e-05 25.4 0.0 1.8e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|529077595|ref|YP_008376598.1| - 0.00015 21.8 0.0 0.00028 21.0 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain PPR_3 PF13812.1 gi|529077595|ref|YP_008376598.1| - 0.028 14.6 0.2 0.12 12.6 0.0 2.2 2 0 0 2 2 2 0 Pentatricopeptide repeat domain PASTA PF03793.14 gi|529077595|ref|YP_008376598.1| - 0.15 11.7 0.4 2 8.1 0.7 2.5 2 1 0 2 2 2 0 PASTA domain zf-C2HC5 PF06221.8 gi|529077596|ref|YP_008376599.1| - 0.00015 21.4 1.0 0.00017 21.2 0.7 1.1 1 0 0 1 1 1 1 Putative zinc finger motif, C2HC5-type DUF1272 PF06906.6 gi|529077596|ref|YP_008376599.1| - 0.00026 20.7 0.7 0.00029 20.6 0.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) HypA PF01155.14 gi|529077596|ref|YP_008376599.1| - 0.0023 17.5 1.0 0.0025 17.4 0.7 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family OrfB_Zn_ribbon PF07282.6 gi|529077596|ref|YP_008376599.1| - 0.0055 16.3 1.1 0.0064 16.1 0.8 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Desulfoferrod_N PF06397.7 gi|529077596|ref|YP_008376599.1| - 0.021 14.1 0.7 0.021 14.1 0.5 1.8 1 1 1 2 2 2 0 Desulfoferrodoxin, N-terminal domain IBR PF01485.16 gi|529077596|ref|YP_008376599.1| - 0.028 14.2 0.8 0.036 13.9 0.6 1.1 1 0 0 1 1 1 0 IBR domain DZR PF12773.2 gi|529077596|ref|YP_008376599.1| - 0.046 13.5 2.2 0.091 12.5 1.5 1.6 1 1 0 1 1 1 0 Double zinc ribbon Elf1 PF05129.8 gi|529077596|ref|YP_008376599.1| - 0.049 13.3 1.0 0.17 11.5 0.7 1.7 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like Zn-ribbon_8 PF09723.5 gi|529077596|ref|YP_008376599.1| - 0.056 13.4 3.3 1.9 8.4 2.3 2.1 1 1 1 2 2 2 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|529077596|ref|YP_008376599.1| - 0.096 12.0 1.1 6.3 6.2 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding Sgf11 PF08209.6 gi|529077596|ref|YP_008376599.1| - 0.11 11.8 1.8 0.29 10.5 0.0 2.0 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) ADK_lid PF05191.9 gi|529077596|ref|YP_008376599.1| - 0.15 11.7 1.5 0.44 10.2 1.1 1.7 1 1 0 1 1 1 0 Adenylate kinase, active site lid C1_1 PF00130.17 gi|529077596|ref|YP_008376599.1| - 0.17 11.5 1.6 0.27 10.9 1.1 1.3 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-AN1 PF01428.11 gi|529077596|ref|YP_008376599.1| - 0.23 11.3 2.6 2.3 8.1 1.7 2.0 1 1 1 2 2 2 0 AN1-like Zinc finger Nudix_N_2 PF14803.1 gi|529077596|ref|YP_008376599.1| - 0.29 10.8 2.8 4.5 7.0 0.2 2.2 2 0 0 2 2 2 0 Nudix N-terminal zinc_ribbon_2 PF13240.1 gi|529077596|ref|YP_008376599.1| - 0.72 9.4 5.5 9.9 5.7 0.6 2.2 1 1 1 2 2 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|529077596|ref|YP_008376599.1| - 1.4 8.4 4.1 2.7 7.5 2.9 1.5 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit UPF0020 PF01170.13 gi|529077597|ref|YP_008376600.1| - 8e-30 103.7 0.0 1.1e-29 103.2 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|529077597|ref|YP_008376600.1| - 2.4e-15 56.5 3.8 2.4e-15 56.5 2.7 2.5 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|529077597|ref|YP_008376600.1| - 2.6e-10 40.1 0.0 3.6e-10 39.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|529077597|ref|YP_008376600.1| - 4.9e-09 36.7 0.2 1.1e-08 35.6 0.2 1.6 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|529077597|ref|YP_008376600.1| - 1.1e-08 34.6 0.0 2.1e-08 33.8 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_11 PF08241.7 gi|529077597|ref|YP_008376600.1| - 1.2e-07 32.1 0.0 2.6e-07 31.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|529077597|ref|YP_008376600.1| - 1.6e-06 27.5 0.0 2.6e-06 26.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.1 gi|529077597|ref|YP_008376600.1| - 4.6e-06 26.9 0.1 8.5e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain THUMP PF02926.12 gi|529077597|ref|YP_008376600.1| - 0.00016 21.6 0.0 0.00025 20.9 0.0 1.3 1 0 0 1 1 1 1 THUMP domain Ubie_methyltran PF01209.13 gi|529077597|ref|YP_008376600.1| - 0.00041 19.5 0.0 0.00064 18.9 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family N6_Mtase PF02384.11 gi|529077597|ref|YP_008376600.1| - 0.0017 17.5 0.0 0.0043 16.1 0.0 1.6 1 1 0 1 1 1 1 N-6 DNA Methylase Methyltransf_23 PF13489.1 gi|529077597|ref|YP_008376600.1| - 0.003 17.3 0.0 0.0062 16.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|529077597|ref|YP_008376600.1| - 0.0067 16.8 0.0 0.014 15.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|529077597|ref|YP_008376600.1| - 0.046 13.2 0.0 0.067 12.7 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase PCMT PF01135.14 gi|529077597|ref|YP_008376600.1| - 0.074 12.5 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TBP PF00352.16 gi|529077598|ref|YP_008376601.1| - 3.1e-65 215.5 0.0 6.3e-32 108.7 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|529077598|ref|YP_008376601.1| - 0.0096 15.9 0.0 1.6 8.8 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) CENP-F_C_Rb_bdg PF10490.4 gi|529077598|ref|YP_008376601.1| - 0.036 13.3 0.6 8.8 5.7 0.0 2.3 2 0 0 2 2 2 0 Rb-binding domain of kinetochore protein Cenp-F/LEK1 VitK2_biosynth PF02621.9 gi|529077599|ref|YP_008376602.1| - 0.17 11.0 1.2 0.22 10.6 0.8 1.1 1 0 0 1 1 1 0 Menaquinone biosynthesis FixQ PF05545.6 gi|529077599|ref|YP_008376602.1| - 0.18 11.4 1.7 0.43 10.2 0.5 2.3 1 1 0 1 1 1 0 Cbb3-type cytochrome oxidase component FixQ Pyr_redox_2 PF07992.9 gi|529077600|ref|YP_008376603.1| - 1.7e-24 86.8 0.0 2.8e-24 86.1 0.0 1.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|529077600|ref|YP_008376603.1| - 5.8e-13 49.3 1.6 1.5e-07 31.6 0.0 2.9 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|529077600|ref|YP_008376603.1| - 2.2e-08 33.3 11.8 0.00055 18.9 0.8 3.1 2 1 1 3 3 3 3 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|529077600|ref|YP_008376603.1| - 4.8e-07 28.6 2.8 4e-05 22.2 0.4 2.5 2 1 1 3 3 3 2 HI0933-like protein GIDA PF01134.17 gi|529077600|ref|YP_008376603.1| - 1.4e-06 27.4 8.4 0.0014 17.5 0.5 3.8 3 1 0 4 4 4 3 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|529077600|ref|YP_008376603.1| - 4.8e-06 26.8 1.4 0.0031 17.8 0.0 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|529077600|ref|YP_008376603.1| - 1.4e-05 24.9 0.1 6e-05 22.9 0.0 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|529077600|ref|YP_008376603.1| - 0.00019 20.3 1.7 0.00019 20.3 1.2 2.0 2 1 1 3 3 3 1 FAD binding domain FAD_oxidored PF12831.2 gi|529077600|ref|YP_008376603.1| - 0.00039 19.6 3.2 0.00063 18.9 2.2 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.1 gi|529077600|ref|YP_008376603.1| - 0.00042 20.1 5.8 0.52 10.0 0.1 3.4 3 1 0 3 3 3 2 FAD-NAD(P)-binding Thi4 PF01946.12 gi|529077600|ref|YP_008376603.1| - 0.00067 18.8 0.6 0.0022 17.1 0.2 2.0 2 0 0 2 2 2 1 Thi4 family NAD_binding_7 PF13241.1 gi|529077600|ref|YP_008376603.1| - 0.0014 18.8 0.3 0.029 14.6 0.0 2.3 2 0 0 2 2 2 1 Putative NAD(P)-binding K_oxygenase PF13434.1 gi|529077600|ref|YP_008376603.1| - 0.0018 17.2 0.1 0.2 10.5 0.0 2.1 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_3 PF01494.14 gi|529077600|ref|YP_008376603.1| - 0.013 14.5 0.2 0.049 12.6 0.2 1.8 2 0 0 2 2 2 0 FAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|529077600|ref|YP_008376603.1| - 0.015 15.0 0.0 2.5 7.7 0.1 2.2 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Lycopene_cycl PF05834.7 gi|529077600|ref|YP_008376603.1| - 0.032 13.1 0.4 0.099 11.5 0.2 1.9 2 0 0 2 2 2 0 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|529077600|ref|YP_008376603.1| - 0.16 10.5 0.1 0.39 9.2 0.1 1.7 1 0 0 1 1 1 0 Tryptophan halogenase PadR PF03551.9 gi|529077602|ref|YP_008376605.1| - 2e-05 24.2 0.0 3.7e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family FUR PF01475.14 gi|529077602|ref|YP_008376605.1| - 3.7e-05 23.6 0.0 7.1e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 Ferric uptake regulator family DUF2513 PF10711.4 gi|529077602|ref|YP_008376605.1| - 0.00042 20.3 0.0 0.00077 19.5 0.0 1.3 1 1 0 1 1 1 1 Hypothetical protein (DUF2513) HTH_20 PF12840.2 gi|529077602|ref|YP_008376605.1| - 0.001 18.8 0.0 0.0021 17.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|529077602|ref|YP_008376605.1| - 0.0015 18.2 0.0 0.0041 16.7 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|529077602|ref|YP_008376605.1| - 0.0045 16.6 0.0 0.0098 15.5 0.0 1.6 1 1 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|529077602|ref|YP_008376605.1| - 0.0075 15.8 0.0 0.015 14.9 0.0 1.6 1 1 0 1 1 1 1 HTH domain MarR PF01047.17 gi|529077602|ref|YP_008376605.1| - 0.029 14.0 0.0 0.081 12.6 0.0 1.7 1 1 0 1 1 1 0 MarR family HTH_24 PF13412.1 gi|529077602|ref|YP_008376605.1| - 0.037 13.4 0.1 0.13 11.7 0.0 1.9 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_34 PF13601.1 gi|529077602|ref|YP_008376605.1| - 0.052 13.5 0.0 0.099 12.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|529077602|ref|YP_008376605.1| - 0.08 13.2 0.0 0.13 12.5 0.0 1.6 1 1 0 1 1 1 0 Winged helix DNA-binding domain YjcQ PF09639.5 gi|529077602|ref|YP_008376605.1| - 0.087 12.9 0.0 0.17 11.9 0.0 1.5 1 1 0 1 1 1 0 YjcQ protein HTH_5 PF01022.15 gi|529077602|ref|YP_008376605.1| - 0.1 12.2 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF86 PF01934.12 gi|529077602|ref|YP_008376605.1| - 0.12 12.0 0.0 0.32 10.6 0.0 1.6 1 1 0 2 2 2 0 Protein of unknown function DUF86 HTH_29 PF13551.1 gi|529077602|ref|YP_008376605.1| - 0.12 12.4 0.0 0.53 10.4 0.0 1.9 1 1 1 2 2 2 0 Winged helix-turn helix RNA_pol_Rpc34 PF05158.7 gi|529077602|ref|YP_008376605.1| - 0.12 11.4 0.0 0.18 10.9 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit AstE_AspA PF04952.9 gi|529077603|ref|YP_008376606.1| - 2.8e-58 197.1 0.0 3.2e-58 196.9 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family FGGY_C PF02782.11 gi|529077603|ref|YP_008376606.1| - 0.075 12.6 0.0 0.18 11.3 0.0 1.6 2 0 0 2 2 2 0 FGGY family of carbohydrate kinases, C-terminal domain PQQ_2 PF13360.1 gi|529077604|ref|YP_008376607.1| - 6.3e-20 71.6 0.0 2.4e-11 43.5 0.0 3.3 2 1 1 3 3 3 3 PQQ-like domain PQQ_3 PF13570.1 gi|529077604|ref|YP_008376607.1| - 2.4e-09 37.1 13.6 0.043 14.1 0.0 7.1 8 0 0 8 8 8 3 PQQ-like domain PQQ PF01011.16 gi|529077604|ref|YP_008376607.1| - 3.1e-07 29.6 0.0 0.45 10.1 0.0 5.2 5 0 0 5 5 5 3 PQQ enzyme repeat ABM PF03992.11 gi|529077605|ref|YP_008376608.1| - 2.9e-13 49.6 0.3 3.9e-13 49.2 0.2 1.2 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase Multi_ubiq PF14452.1 gi|529077605|ref|YP_008376608.1| - 0.06 13.3 0.1 0.14 12.1 0.1 1.6 1 1 1 2 2 2 0 Multiubiquitin PALP PF00291.20 gi|529077606|ref|YP_008376609.1| - 4e-59 200.3 1.8 4.5e-59 200.1 1.3 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme BMC PF00936.14 gi|529077606|ref|YP_008376609.1| - 0.05 13.2 0.1 0.097 12.3 0.0 1.5 1 0 0 1 1 1 0 BMC domain SRP54 PF00448.17 gi|529077607|ref|YP_008376610.1| - 2.1e-62 210.1 0.1 3.1e-62 209.5 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|529077607|ref|YP_008376610.1| - 1.4e-28 99.1 6.7 1.4e-28 99.1 4.6 3.0 3 0 0 3 3 3 1 Signal peptide binding domain SRP54_N PF02881.14 gi|529077607|ref|YP_008376610.1| - 1.5e-13 50.6 0.1 4.7e-13 49.0 0.0 1.9 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain CbiA PF01656.18 gi|529077607|ref|YP_008376610.1| - 0.00039 19.8 0.4 0.0024 17.3 0.1 2.4 1 1 1 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.14 gi|529077607|ref|YP_008376610.1| - 0.0014 18.1 0.5 0.014 14.8 0.3 2.3 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.7 gi|529077607|ref|YP_008376610.1| - 0.0029 16.7 0.0 0.0068 15.5 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin MobB PF03205.9 gi|529077607|ref|YP_008376610.1| - 0.0037 16.9 0.0 0.0089 15.7 0.0 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B SMC_N PF02463.14 gi|529077607|ref|YP_008376610.1| - 0.0085 15.3 0.0 0.014 14.6 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|529077607|ref|YP_008376610.1| - 0.013 16.2 1.2 0.044 14.6 0.3 2.5 2 1 0 2 2 1 0 AAA domain AAA_19 PF13245.1 gi|529077607|ref|YP_008376610.1| - 0.015 15.0 0.0 0.072 12.8 0.0 2.2 2 1 0 2 2 2 0 Part of AAA domain ArsA_ATPase PF02374.10 gi|529077607|ref|YP_008376610.1| - 0.017 14.1 6.7 0.055 12.5 0.0 3.2 2 1 0 3 3 3 0 Anion-transporting ATPase AAA_33 PF13671.1 gi|529077607|ref|YP_008376610.1| - 0.018 14.8 0.0 0.041 13.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|529077607|ref|YP_008376610.1| - 0.033 14.1 0.3 0.096 12.6 0.1 1.9 1 1 1 2 2 2 0 AAA ATPase domain KTI12 PF08433.5 gi|529077607|ref|YP_008376610.1| - 0.034 13.3 0.0 0.069 12.3 0.0 1.5 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_22 PF13401.1 gi|529077607|ref|YP_008376610.1| - 0.043 13.9 0.0 0.16 12.1 0.0 2.0 2 0 0 2 2 1 0 AAA domain APS_kinase PF01583.15 gi|529077607|ref|YP_008376610.1| - 0.044 13.4 0.0 0.084 12.5 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_23 PF13476.1 gi|529077607|ref|YP_008376610.1| - 0.058 13.7 0.0 0.11 12.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|529077607|ref|YP_008376610.1| - 0.064 12.6 2.2 0.12 11.7 1.5 1.8 1 1 0 1 1 1 0 AAA-like domain Thymidylate_kin PF02223.12 gi|529077607|ref|YP_008376610.1| - 0.084 12.2 0.1 0.22 10.8 0.0 1.7 2 0 0 2 2 1 0 Thymidylate kinase PRK PF00485.13 gi|529077607|ref|YP_008376610.1| - 0.096 12.2 0.0 0.34 10.4 0.0 2.0 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_18 PF13238.1 gi|529077607|ref|YP_008376610.1| - 0.1 12.8 0.1 0.67 10.2 0.0 2.4 2 1 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|529077607|ref|YP_008376610.1| - 0.34 10.5 1.2 0.64 9.6 0.1 2.0 2 0 0 2 2 2 0 NACHT domain SpoIIAA-like PF11964.3 gi|529077607|ref|YP_008376610.1| - 0.68 10.2 0.1 0.68 10.2 0.0 3.4 5 0 0 5 5 2 0 SpoIIAA-like AAA_28 PF13521.1 gi|529077607|ref|YP_008376610.1| - 0.85 9.5 5.3 19 5.2 0.3 3.3 2 1 1 3 3 3 0 AAA domain AAA_25 PF13481.1 gi|529077607|ref|YP_008376610.1| - 1.5 8.2 6.0 0.86 8.9 1.4 2.5 2 1 0 2 2 2 0 AAA domain ABC_membrane PF00664.18 gi|529077608|ref|YP_008376611.1| - 9.8e-39 133.4 2.4 1.3e-38 133.0 1.7 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.22 gi|529077608|ref|YP_008376611.1| - 9.5e-37 126.3 0.0 1.8e-36 125.4 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|529077608|ref|YP_008376611.1| - 6e-06 26.4 0.0 0.0001 22.3 0.0 2.4 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|529077608|ref|YP_008376611.1| - 2e-05 23.8 0.0 4.2e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_16 PF13191.1 gi|529077608|ref|YP_008376611.1| - 0.00023 21.1 0.0 0.00046 20.2 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|529077608|ref|YP_008376611.1| - 0.00027 20.2 0.7 0.015 14.5 0.1 2.1 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|529077608|ref|YP_008376611.1| - 0.00033 20.8 0.2 0.0027 17.8 0.2 2.3 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|529077608|ref|YP_008376611.1| - 0.00043 21.0 0.7 0.0016 19.2 0.2 2.4 2 1 0 2 2 1 1 AAA domain DUF258 PF03193.11 gi|529077608|ref|YP_008376611.1| - 0.00045 19.4 0.0 0.00082 18.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|529077608|ref|YP_008376611.1| - 0.0016 17.9 0.0 0.005 16.3 0.0 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|529077608|ref|YP_008376611.1| - 0.0017 18.2 0.0 0.0042 16.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|529077608|ref|YP_008376611.1| - 0.0027 18.0 0.1 0.01 16.1 0.0 2.1 2 0 0 2 2 1 1 AAA domain AAA_25 PF13481.1 gi|529077608|ref|YP_008376611.1| - 0.0091 15.4 0.1 0.027 13.8 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|529077608|ref|YP_008376611.1| - 0.013 15.7 0.1 0.098 12.8 0.1 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ABC_membrane_3 PF13748.1 gi|529077608|ref|YP_008376611.1| - 0.013 14.5 2.0 1.2 8.1 0.2 2.3 2 0 0 2 2 2 0 ABC transporter transmembrane region Guanylate_kin PF00625.16 gi|529077608|ref|YP_008376611.1| - 0.013 14.9 0.2 0.057 12.8 0.1 1.9 1 1 0 1 1 1 0 Guanylate kinase AAA_30 PF13604.1 gi|529077608|ref|YP_008376611.1| - 0.018 14.6 0.7 0.086 12.4 0.5 2.0 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|529077608|ref|YP_008376611.1| - 0.023 14.1 0.4 0.064 12.6 0.3 1.8 1 1 0 1 1 1 0 AAA-like domain DUF87 PF01935.12 gi|529077608|ref|YP_008376611.1| - 0.033 13.9 0.1 0.096 12.4 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function DUF87 T2SE PF00437.15 gi|529077608|ref|YP_008376611.1| - 0.036 12.9 0.1 0.24 10.2 0.0 2.0 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_5 PF07728.9 gi|529077608|ref|YP_008376611.1| - 0.046 13.4 0.1 0.43 10.3 0.0 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) UPF0079 PF02367.12 gi|529077608|ref|YP_008376611.1| - 0.052 13.1 0.1 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 MMR_HSR1 PF01926.18 gi|529077608|ref|YP_008376611.1| - 0.068 13.1 0.0 0.2 11.6 0.0 1.9 2 0 0 2 2 1 0 50S ribosome-binding GTPase AAA_14 PF13173.1 gi|529077608|ref|YP_008376611.1| - 0.071 13.0 0.0 0.24 11.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|529077608|ref|YP_008376611.1| - 0.072 12.7 0.1 0.17 11.5 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_23 PF13476.1 gi|529077608|ref|YP_008376611.1| - 0.084 13.1 0.0 0.19 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AzlD PF05437.7 gi|529077609|ref|YP_008376612.1| - 0.048 13.6 0.1 0.052 13.5 0.1 1.1 1 0 0 1 1 1 0 Branched-chain amino acid transport protein (AzlD) DUF3685 PF12452.3 gi|529077609|ref|YP_008376612.1| - 0.075 12.2 0.0 0.075 12.1 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3685) PDT PF00800.13 gi|529077610|ref|YP_008376613.1| - 1.2e-46 158.5 0.6 1.5e-46 158.2 0.4 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.20 gi|529077610|ref|YP_008376613.1| - 1.6e-06 27.4 0.0 4.9e-06 25.9 0.0 1.9 1 0 0 1 1 1 1 ACT domain Pkinase PF00069.20 gi|529077611|ref|YP_008376614.1| - 6.4e-06 25.4 0.0 8.9e-06 25.0 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.12 gi|529077611|ref|YP_008376614.1| - 9.5e-05 21.5 0.0 0.00013 21.1 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase Kinase-like PF14531.1 gi|529077611|ref|YP_008376614.1| - 0.0013 17.7 0.0 0.0019 17.2 0.0 1.2 1 0 0 1 1 1 1 Kinase-like Cpn60_TCP1 PF00118.19 gi|529077612|ref|YP_008376615.1| - 1.2e-164 548.5 7.4 1.4e-164 548.3 5.2 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family KH_1 PF00013.24 gi|529077613|ref|YP_008376616.1| - 2.1e-18 65.6 1.9 6e-10 38.6 0.1 2.2 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|529077613|ref|YP_008376616.1| - 2.5e-08 33.3 0.5 5.1e-05 22.8 0.0 2.6 2 0 0 2 2 2 2 KH domain KH_2 PF07650.12 gi|529077613|ref|YP_008376616.1| - 7.1e-06 25.4 1.0 0.00036 20.0 0.1 2.5 2 1 0 2 2 2 1 KH domain KH_4 PF13083.1 gi|529077613|ref|YP_008376616.1| - 0.043 13.4 2.9 2.7 7.6 0.2 3.1 3 1 1 4 4 4 0 KH domain Rad51 PF08423.6 gi|529077614|ref|YP_008376617.1| - 1.5e-81 273.1 0.1 1.3e-47 161.8 0.0 2.0 2 0 0 2 2 2 2 Rad51 HHH_5 PF14520.1 gi|529077614|ref|YP_008376617.1| - 1.9e-11 43.9 0.2 1.1e-10 41.5 0.1 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix domain RecA PF00154.16 gi|529077614|ref|YP_008376617.1| - 7.8e-08 31.7 0.1 0.002 17.2 0.0 2.1 1 1 1 2 2 2 2 recA bacterial DNA recombination protein AAA_25 PF13481.1 gi|529077614|ref|YP_008376617.1| - 5.5e-07 29.1 0.4 1.5e-06 27.7 0.3 1.7 1 1 0 1 1 1 1 AAA domain HHH PF00633.18 gi|529077614|ref|YP_008376617.1| - 9.2e-07 28.2 0.3 0.00015 21.2 0.0 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_2 PF12826.2 gi|529077614|ref|YP_008376617.1| - 0.00014 21.6 0.0 0.0004 20.2 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif KaiC PF06745.8 gi|529077614|ref|YP_008376617.1| - 0.00023 20.3 0.3 0.00033 19.8 0.2 1.5 1 1 0 1 1 1 1 KaiC Cdd1 PF11731.3 gi|529077614|ref|YP_008376617.1| - 0.0021 17.9 0.0 0.006 16.4 0.0 1.8 2 0 0 2 2 2 1 Pathogenicity locus IMS_HHH PF11798.3 gi|529077614|ref|YP_008376617.1| - 0.0067 16.4 0.0 0.025 14.6 0.0 2.0 2 0 0 2 2 2 1 IMS family HHH motif AAA_22 PF13401.1 gi|529077614|ref|YP_008376617.1| - 0.032 14.3 0.3 0.14 12.3 0.2 2.0 1 1 0 1 1 1 0 AAA domain DNA_pol_lambd_f PF10391.4 gi|529077614|ref|YP_008376617.1| - 0.051 13.1 0.0 0.18 11.3 0.0 2.0 1 1 0 1 1 1 0 Fingers domain of DNA polymerase lambda HHH_8 PF14716.1 gi|529077614|ref|YP_008376617.1| - 0.057 13.6 0.0 0.21 11.7 0.0 2.0 2 0 0 2 2 2 0 Helix-hairpin-helix domain HHH_3 PF12836.2 gi|529077614|ref|YP_008376617.1| - 0.063 13.2 0.0 3.1 7.7 0.0 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix motif LrgB PF04172.11 gi|529077615|ref|YP_008376618.1| - 0.0086 15.2 0.7 0.01 14.9 0.5 1.1 1 0 0 1 1 1 1 LrgB-like family AsnC_trans_reg PF01037.16 gi|529077616|ref|YP_008376619.1| - 2.4e-08 33.5 0.2 2.7e-08 33.4 0.2 1.1 1 0 0 1 1 1 1 AsnC family BAF PF02961.9 gi|529077616|ref|YP_008376619.1| - 0.15 12.3 0.0 0.16 12.3 0.0 1.1 1 0 0 1 1 1 0 Barrier to autointegration factor TrkA_N PF02254.13 gi|529077617|ref|YP_008376620.1| - 9e-25 86.9 0.1 1.4e-24 86.2 0.1 1.3 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|529077617|ref|YP_008376620.1| - 2.5e-10 39.7 0.5 1.2e-09 37.6 0.1 2.1 2 0 0 2 2 2 1 TrkA-C domain DAO PF01266.19 gi|529077617|ref|YP_008376620.1| - 1.3e-05 24.2 0.2 1.5e-05 24.1 0.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|529077617|ref|YP_008376620.1| - 1.6e-05 24.8 0.2 6.7e-05 22.8 0.1 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|529077617|ref|YP_008376620.1| - 2.3e-05 23.8 0.0 4.9e-05 22.7 0.0 1.4 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAD_binding_3 PF01494.14 gi|529077617|ref|YP_008376620.1| - 3.9e-05 22.8 0.1 4.3e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain NAD_binding_7 PF13241.1 gi|529077617|ref|YP_008376620.1| - 4.2e-05 23.7 0.1 9.7e-05 22.5 0.0 1.7 1 0 0 1 1 1 1 Putative NAD(P)-binding NAD_binding_10 PF13460.1 gi|529077617|ref|YP_008376620.1| - 0.00013 22.0 2.4 0.00021 21.3 0.9 1.8 1 1 1 2 2 2 1 NADH(P)-binding Pyr_redox PF00070.22 gi|529077617|ref|YP_008376620.1| - 0.00083 19.7 0.5 0.0017 18.6 0.3 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|529077617|ref|YP_008376620.1| - 0.001 18.5 0.1 0.0015 17.9 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.13 gi|529077617|ref|YP_008376620.1| - 0.0012 18.5 0.5 0.0026 17.4 0.1 1.7 1 1 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CPSase_L_chain PF00289.17 gi|529077617|ref|YP_008376620.1| - 0.0014 18.6 0.0 0.0028 17.7 0.0 1.6 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain NAD_binding_8 PF13450.1 gi|529077617|ref|YP_008376620.1| - 0.0031 17.5 0.3 0.0062 16.5 0.2 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|529077617|ref|YP_008376620.1| - 0.0036 16.2 0.7 0.0043 15.9 0.4 1.3 1 1 0 1 1 1 1 FAD binding domain AlaDh_PNT_C PF01262.16 gi|529077617|ref|YP_008376620.1| - 0.005 16.4 0.2 0.0081 15.7 0.1 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain AdoHcyase_NAD PF00670.16 gi|529077617|ref|YP_008376620.1| - 0.0064 16.3 0.2 0.012 15.4 0.1 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain adh_short PF00106.20 gi|529077617|ref|YP_008376620.1| - 0.0065 16.3 1.7 0.0094 15.8 1.0 1.5 1 1 0 1 1 1 1 short chain dehydrogenase IlvN PF07991.7 gi|529077617|ref|YP_008376620.1| - 0.025 13.9 0.1 0.041 13.2 0.1 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.14 gi|529077617|ref|YP_008376620.1| - 0.027 13.6 0.1 0.045 12.8 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thi4 PF01946.12 gi|529077617|ref|YP_008376620.1| - 0.057 12.4 0.1 0.076 12.1 0.1 1.3 1 0 0 1 1 1 0 Thi4 family XdhC_C PF13478.1 gi|529077617|ref|YP_008376620.1| - 0.067 13.4 0.2 0.12 12.6 0.0 1.6 2 0 0 2 2 1 0 XdhC Rossmann domain F420_oxidored PF03807.12 gi|529077617|ref|YP_008376620.1| - 0.086 13.2 0.1 0.18 12.2 0.0 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Rossmann-like PF10727.4 gi|529077617|ref|YP_008376620.1| - 0.093 12.4 0.6 0.54 9.9 0.1 2.4 2 1 1 3 3 3 0 Rossmann-like domain NAD_Gly3P_dh_N PF01210.18 gi|529077617|ref|YP_008376620.1| - 0.11 12.2 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Glyco_trans_4_4 PF13579.1 gi|529077617|ref|YP_008376620.1| - 0.18 11.9 2.0 0.34 11.0 0.6 2.2 2 1 0 2 2 2 0 Glycosyl transferase 4-like domain AsnC_trans_reg PF01037.16 gi|529077618|ref|YP_008376621.1| - 3e-13 49.2 0.1 3.4e-13 49.0 0.1 1.0 1 0 0 1 1 1 1 AsnC family YscJ_FliF PF01514.12 gi|529077618|ref|YP_008376621.1| - 0.11 11.6 0.1 0.33 10.0 0.0 1.8 1 1 1 2 2 2 0 Secretory protein of YscJ/FliF family DUF457 PF04307.9 gi|529077620|ref|YP_008376623.1| - 0.0016 17.7 2.3 0.0023 17.2 1.6 1.4 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Zn_dep_PLPC PF00882.13 gi|529077620|ref|YP_008376623.1| - 0.1 12.2 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 Zinc dependent phospholipase C DUF4184 PF13803.1 gi|529077620|ref|YP_008376623.1| - 0.6 9.3 2.4 7.9 5.7 1.6 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4184) Glycos_transf_3 PF00591.16 gi|529077621|ref|YP_008376624.1| - 1.1e-99 332.9 1.3 1.5e-99 332.5 0.9 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|529077621|ref|YP_008376624.1| - 2.3e-17 62.3 2.3 2.3e-17 62.3 1.6 2.5 3 0 0 3 3 3 1 Glycosyl transferase family, helical bundle domain DUF2717 PF10911.3 gi|529077621|ref|YP_008376624.1| - 0.0043 16.5 0.0 0.012 15.1 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF2717) PRAI PF00697.17 gi|529077622|ref|YP_008376625.1| - 1.7e-38 132.1 0.2 1.9e-38 132.0 0.2 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase DUF2188 PF09954.4 gi|529077622|ref|YP_008376625.1| - 0.0034 17.2 0.0 0.0081 16.0 0.0 1.6 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2188) NMO PF03060.10 gi|529077622|ref|YP_008376625.1| - 0.005 16.0 2.1 0.0059 15.7 1.5 1.2 1 0 0 1 1 1 1 Nitronate monooxygenase FMN_dh PF01070.13 gi|529077622|ref|YP_008376625.1| - 0.0054 15.6 0.0 0.012 14.5 0.0 1.5 1 1 0 1 1 1 1 FMN-dependent dehydrogenase TMP-TENI PF02581.12 gi|529077622|ref|YP_008376625.1| - 0.0059 15.7 1.5 0.031 13.3 1.0 2.3 1 1 0 1 1 1 1 Thiamine monophosphate synthase/TENI BtpA PF03437.10 gi|529077622|ref|YP_008376625.1| - 0.016 14.5 0.7 0.11 11.7 0.1 2.3 1 1 2 3 3 3 0 BtpA family OAD_gamma PF04277.8 gi|529077622|ref|YP_008376625.1| - 0.15 12.4 0.9 0.27 11.6 0.6 1.5 1 0 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain Chorismate_bind PF00425.13 gi|529077623|ref|YP_008376626.1| - 8.7e-88 293.9 0.0 1.3e-87 293.4 0.0 1.2 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|529077623|ref|YP_008376626.1| - 1.1e-21 77.3 0.1 4.6e-20 72.0 0.0 2.7 2 0 0 2 2 2 1 Anthranilate synthase component I, N terminal region GATase PF00117.23 gi|529077624|ref|YP_008376627.1| - 4.3e-45 153.5 0.0 4.8e-45 153.3 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|529077624|ref|YP_008376627.1| - 3.6e-08 33.1 0.0 8.6e-08 31.8 0.0 1.6 1 1 0 1 1 1 1 Peptidase C26 Ribonuc_red_lgC PF02867.10 gi|529077625|ref|YP_008376628.1| - 3.9e-130 434.9 0.1 7.3e-67 226.1 0.0 4.2 4 0 0 4 4 4 4 Ribonucleotide reductase, barrel domain LAGLIDADG_3 PF14528.1 gi|529077625|ref|YP_008376628.1| - 1.6e-66 220.4 0.3 9.6e-22 77.0 0.0 8.3 8 0 0 8 8 8 5 LAGLIDADG-like domain Intein_splicing PF14890.1 gi|529077625|ref|YP_008376628.1| - 4e-53 180.3 0.0 3.4e-11 42.6 0.0 6.8 6 1 0 6 6 6 6 Intein splicing domain TSCPD PF12637.2 gi|529077625|ref|YP_008376628.1| - 1.3e-26 92.3 0.0 4.3e-25 87.4 0.0 2.7 2 0 0 2 2 2 1 TSCPD domain Ribonuc_red_lgN PF00317.16 gi|529077625|ref|YP_008376628.1| - 6.4e-21 73.9 1.6 3.2e-16 58.9 0.0 3.7 3 1 0 3 3 3 2 Ribonucleotide reductase, all-alpha domain Hint_2 PF13403.1 gi|529077625|ref|YP_008376628.1| - 6.4e-11 42.3 2.9 0.15 11.9 0.0 6.6 6 0 0 6 6 6 2 Hint domain LAGLIDADG_WhiA PF14527.1 gi|529077625|ref|YP_008376628.1| - 7.1e-10 38.6 0.0 0.0011 18.7 0.0 3.5 3 0 0 3 3 3 2 WhiA LAGLIDADG-like domain HTH_23 PF13384.1 gi|529077625|ref|YP_008376628.1| - 9e-09 34.7 0.0 0.001 18.6 0.0 2.7 2 0 0 2 2 2 2 Homeodomain-like domain Hint PF01079.15 gi|529077625|ref|YP_008376628.1| - 1.5e-08 34.1 0.0 0.083 12.0 0.0 3.7 3 0 0 3 3 3 3 Hint module GerE PF00196.14 gi|529077625|ref|YP_008376628.1| - 0.00012 21.3 0.0 0.24 10.7 0.0 2.6 2 0 0 2 2 2 2 Bacterial regulatory proteins, luxR family HTH_38 PF13936.1 gi|529077625|ref|YP_008376628.1| - 0.00022 20.6 0.0 0.12 12.0 0.0 2.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_28 PF13518.1 gi|529077625|ref|YP_008376628.1| - 0.00092 19.1 0.0 0.28 11.2 0.0 2.9 2 0 0 2 2 2 1 Helix-turn-helix domain Hom_end PF05204.9 gi|529077625|ref|YP_008376628.1| - 0.0011 18.8 1.3 0.046 13.6 0.0 4.1 5 0 0 5 5 5 1 Homing endonuclease Sigma70_r4_2 PF08281.7 gi|529077625|ref|YP_008376628.1| - 0.0015 17.9 0.1 1.9 8.0 0.0 2.8 2 0 0 2 2 2 2 Sigma-70, region 4 PT-HINT PF07591.6 gi|529077625|ref|YP_008376628.1| - 0.0033 17.2 0.6 12 5.8 0.0 4.4 4 0 0 4 4 4 0 Pretoxin HINT domain HTH_7 PF02796.10 gi|529077625|ref|YP_008376628.1| - 0.0044 16.8 0.0 1.5 8.7 0.0 2.7 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_AsnC-type PF13404.1 gi|529077625|ref|YP_008376628.1| - 0.061 12.8 0.1 8.3 6.0 0.0 2.8 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|529077625|ref|YP_008376628.1| - 0.081 12.5 0.0 4.3 7.0 0.0 3.0 2 0 0 2 2 2 0 HTH domain CPSase_L_D3 PF02787.14 gi|529077625|ref|YP_008376628.1| - 0.13 12.0 0.0 18 5.0 0.0 2.9 2 0 0 2 2 2 0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain WhiA_N PF10298.4 gi|529077625|ref|YP_008376628.1| - 0.4 10.5 0.0 3 7.7 0.0 2.4 2 0 0 2 2 2 0 WhiA N-terminal LAGLIDADG-like domain Auto_anti-p27 PF06677.7 gi|529077626|ref|YP_008376629.1| - 7.9e-05 22.3 3.1 9.9e-05 22.0 2.2 1.1 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Rieske PF00355.21 gi|529077626|ref|YP_008376629.1| - 0.055 13.0 1.8 0.062 12.8 1.2 1.1 1 0 0 1 1 1 0 Rieske [2Fe-2S] domain DZR PF12773.2 gi|529077626|ref|YP_008376629.1| - 0.057 13.2 1.8 0.063 13.0 1.2 1.2 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|529077626|ref|YP_008376629.1| - 0.058 12.8 0.4 0.058 12.8 0.3 2.0 2 1 0 1 1 1 0 zinc-ribbon domain zf-C4_Topoisom PF01396.14 gi|529077626|ref|YP_008376629.1| - 0.19 11.2 2.8 0.42 10.1 1.9 1.6 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Fer4_9 PF13187.1 gi|529077626|ref|YP_008376629.1| - 0.26 11.5 3.8 0.31 11.3 2.6 1.2 1 0 0 1 1 1 0 4Fe-4S dicluster domain zf-Mss51 PF13824.1 gi|529077626|ref|YP_008376629.1| - 0.52 10.2 6.3 5.4 6.9 4.4 2.0 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 TF_Zn_Ribbon PF08271.7 gi|529077626|ref|YP_008376629.1| - 0.99 8.7 4.0 4.5 6.6 2.8 1.9 1 1 0 1 1 1 0 TFIIB zinc-binding zf-FPG_IleRS PF06827.9 gi|529077626|ref|YP_008376629.1| - 1.4 8.6 7.5 3.5 7.3 5.2 1.9 1 1 0 1 1 1 0 Zinc finger found in FPG and IleRS zf-ribbon_3 PF13248.1 gi|529077626|ref|YP_008376629.1| - 1.6 8.0 5.1 0.55 9.5 1.1 2.1 1 1 0 1 1 1 0 zinc-ribbon domain DUF1610 PF07754.6 gi|529077626|ref|YP_008376629.1| - 2 8.6 12.3 20 5.4 1.1 2.9 1 1 1 2 2 2 0 Domain of unknown function (DUF1610) DUF723 PF05265.8 gi|529077626|ref|YP_008376629.1| - 7.2 6.4 6.1 1.2 8.9 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF723) SNARE_assoc PF09335.6 gi|529077627|ref|YP_008376630.1| - 6.3e-17 61.9 4.9 6.3e-17 61.9 3.4 2.1 3 0 0 3 3 3 1 SNARE associated Golgi protein Kinocilin PF15033.1 gi|529077627|ref|YP_008376630.1| - 0.81 9.2 6.3 0.076 12.5 0.5 2.0 2 0 0 2 2 2 0 Kinocilin protein TSC22 PF01166.13 gi|529077629|ref|YP_008376632.1| - 0.045 13.7 0.3 0.1 12.5 0.2 1.5 1 0 0 1 1 1 0 TSC-22/dip/bun family Macoilin PF09726.4 gi|529077629|ref|YP_008376632.1| - 0.49 8.6 7.1 0.58 8.3 5.0 1.1 1 0 0 1 1 1 0 Transmembrane protein Pneumo_att_G PF05539.6 gi|529077629|ref|YP_008376632.1| - 4.4 6.5 8.7 5.9 6.1 6.0 1.1 1 0 0 1 1 1 0 Pneumovirinae attachment membrane glycoprotein G Mac PF12464.3 gi|529077630|ref|YP_008376633.1| - 2e-22 78.9 0.7 5.3e-22 77.5 0.3 1.7 2 0 0 2 2 2 1 Maltose acetyltransferase Hexapep PF00132.19 gi|529077630|ref|YP_008376633.1| - 2.6e-15 55.1 9.8 7.9e-11 40.9 2.3 3.7 3 1 0 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|529077630|ref|YP_008376633.1| - 3.9e-14 51.9 11.9 4.3e-11 42.1 1.4 3.7 4 0 0 4 4 4 3 Hexapeptide repeat of succinyl-transferase AsnC_trans_reg PF01037.16 gi|529077631|ref|YP_008376634.1| - 3.4e-11 42.6 1.0 5.4e-11 42.0 0.7 1.3 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|529077631|ref|YP_008376634.1| - 1.1e-08 34.2 0.1 3e-08 32.9 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|529077631|ref|YP_008376634.1| - 9.2e-05 21.9 0.0 0.00022 20.7 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|529077631|ref|YP_008376634.1| - 0.00021 21.0 0.0 0.00059 19.5 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|529077631|ref|YP_008376634.1| - 0.00072 19.8 0.1 0.0032 17.7 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|529077631|ref|YP_008376634.1| - 0.00074 19.1 0.0 0.0028 17.3 0.0 2.0 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.4 gi|529077631|ref|YP_008376634.1| - 0.00075 19.3 0.0 0.0017 18.2 0.0 1.6 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) MarR_2 PF12802.2 gi|529077631|ref|YP_008376634.1| - 0.0013 18.3 0.0 0.011 15.4 0.0 2.3 2 0 0 2 2 2 1 MarR family GYD PF08734.6 gi|529077631|ref|YP_008376634.1| - 0.0013 18.4 0.2 0.0018 17.9 0.1 1.4 1 0 0 1 1 1 1 GYD domain DUF2110 PF09883.4 gi|529077631|ref|YP_008376634.1| - 0.021 14.4 0.3 0.03 13.9 0.2 1.3 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2110) HTH_5 PF01022.15 gi|529077631|ref|YP_008376634.1| - 0.024 14.2 0.0 0.045 13.4 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TFIIE_alpha PF02002.12 gi|529077631|ref|YP_008376634.1| - 0.04 13.4 0.2 0.11 12.0 0.0 1.9 2 1 0 2 2 2 0 TFIIE alpha subunit Leader_Erm PF08253.6 gi|529077631|ref|YP_008376634.1| - 0.59 9.6 2.1 9.1 5.8 0.1 2.4 2 0 0 2 2 2 0 Erm Leader peptide EamA PF00892.15 gi|529077632|ref|YP_008376635.1| - 2.4e-31 108.4 29.4 4.6e-16 58.9 6.5 2.1 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.11 gi|529077632|ref|YP_008376635.1| - 0.012 15.3 24.0 0.36 10.4 4.0 2.6 2 1 0 2 2 2 0 Triose-phosphate Transporter family EmrE PF13536.1 gi|529077632|ref|YP_008376635.1| - 0.019 15.1 4.9 0.019 15.1 3.4 4.1 2 2 1 3 3 3 0 Multidrug resistance efflux transporter DUF2048 PF09752.4 gi|529077632|ref|YP_008376635.1| - 8.5 5.1 5.9 2.2 7.0 0.3 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2048) Tnp_DNA_bind PF14706.1 gi|529077634|ref|YP_008376637.1| - 4.4e-26 90.3 0.0 7.9e-26 89.5 0.0 1.4 1 0 0 1 1 1 1 Transposase DNA-binding DDE_Tnp_1 PF01609.16 gi|529077634|ref|YP_008376637.1| - 1.4e-05 24.7 0.1 2.5e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain Dimer_Tnp_Tn5 PF02281.11 gi|529077634|ref|YP_008376637.1| - 0.035 14.2 0.0 0.084 13.0 0.0 1.7 1 0 0 1 1 1 0 Transposase Tn5 dimerisation domain Thymidylate_kin PF02223.12 gi|529077635|ref|YP_008376638.1| - 1.3e-38 132.2 0.0 1.4e-38 132.1 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_33 PF13671.1 gi|529077635|ref|YP_008376638.1| - 0.0012 18.6 0.0 0.0024 17.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|529077635|ref|YP_008376638.1| - 0.021 15.1 0.0 0.038 14.3 0.0 1.5 1 1 0 1 1 1 0 AAA domain DUF3144 PF11342.3 gi|529077635|ref|YP_008376638.1| - 0.037 14.1 0.0 0.077 13.0 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3144) NAD_binding_10 PF13460.1 gi|529077636|ref|YP_008376639.1| - 1e-32 113.6 0.0 1.3e-32 113.3 0.0 1.1 1 0 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|529077636|ref|YP_008376639.1| - 1.3e-21 77.1 0.0 7.5e-21 74.6 0.0 2.0 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|529077636|ref|YP_008376639.1| - 1.8e-16 59.6 0.0 4.4e-15 55.1 0.0 2.0 1 1 0 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family NmrA PF05368.8 gi|529077636|ref|YP_008376639.1| - 1.8e-15 56.8 0.0 2.5e-15 56.3 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family RmlD_sub_bind PF04321.12 gi|529077636|ref|YP_008376639.1| - 1.1e-14 54.0 0.0 3.5e-07 29.3 0.0 2.2 2 0 0 2 2 2 2 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|529077636|ref|YP_008376639.1| - 1.1e-06 27.7 0.0 0.0071 15.2 0.0 2.3 1 1 1 2 2 2 2 Male sterility protein adh_short PF00106.20 gi|529077636|ref|YP_008376639.1| - 1.8e-06 27.9 0.1 4.9e-06 26.5 0.1 1.8 1 1 0 1 1 1 1 short chain dehydrogenase Polysacc_synt_2 PF02719.10 gi|529077636|ref|YP_008376639.1| - 2.6e-05 23.2 0.0 0.00086 18.2 0.0 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein Saccharop_dh PF03435.13 gi|529077636|ref|YP_008376639.1| - 0.0011 18.0 0.1 0.0016 17.4 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase TrkA_N PF02254.13 gi|529077636|ref|YP_008376639.1| - 0.0019 18.1 0.0 0.0048 16.8 0.0 1.7 1 0 0 1 1 1 1 TrkA-N domain KR PF08659.5 gi|529077636|ref|YP_008376639.1| - 0.0038 16.9 0.0 0.092 12.3 0.0 2.4 2 1 0 2 2 2 1 KR domain Glyco_trans_4_4 PF13579.1 gi|529077636|ref|YP_008376639.1| - 0.0039 17.3 0.1 0.0085 16.2 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Tubulin PF00091.20 gi|529077637|ref|YP_008376640.1| - 1.4e-24 87.1 0.0 3e-24 86.0 0.0 1.6 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain DUF4398 PF14346.1 gi|529077638|ref|YP_008376641.1| - 0.00013 21.9 1.7 0.00025 21.0 1.2 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4398) DUF3708 PF12501.3 gi|529077638|ref|YP_008376641.1| - 0.0046 16.8 0.8 1.1 9.0 0.1 2.1 2 0 0 2 2 2 2 Phosphate ATP-binding cassette transporter DUF4366 PF14283.1 gi|529077638|ref|YP_008376641.1| - 0.0091 15.4 0.5 0.021 14.2 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4366) AMIN PF11741.3 gi|529077638|ref|YP_008376641.1| - 0.061 13.2 0.1 0.45 10.4 0.0 2.2 2 1 1 3 3 3 0 AMIN domain Rotamase_2 PF13145.1 gi|529077638|ref|YP_008376641.1| - 0.077 13.6 0.7 0.17 12.5 0.5 1.5 1 0 0 1 1 1 0 PPIC-type PPIASE domain PTS_IIA PF02255.11 gi|529077638|ref|YP_008376641.1| - 0.18 11.6 0.8 0.39 10.6 0.2 1.8 1 1 1 2 2 2 0 PTS system, Lactose/Cellobiose specific IIA subunit CofC PF01983.11 gi|529077639|ref|YP_008376642.1| - 5.5e-39 133.3 0.0 6.6e-39 133.1 0.0 1.0 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.2 gi|529077639|ref|YP_008376642.1| - 0.0053 16.8 0.4 0.0068 16.5 0.3 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain Radical_SAM PF04055.16 gi|529077640|ref|YP_008376643.1| - 3.1e-16 60.0 0.0 6.3e-16 58.9 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily zf-ribbon_3 PF13248.1 gi|529077641|ref|YP_008376644.1| - 5.8e-05 22.1 2.3 9.6e-05 21.4 1.6 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|529077641|ref|YP_008376644.1| - 0.00041 19.7 3.9 0.00063 19.1 2.7 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|529077641|ref|YP_008376644.1| - 0.0012 18.6 2.7 0.0022 17.8 1.9 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-RanBP PF00641.13 gi|529077641|ref|YP_008376644.1| - 0.02 13.9 1.5 0.032 13.3 1.0 1.3 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others zf-DNL PF05180.7 gi|529077641|ref|YP_008376644.1| - 0.053 13.2 0.3 0.086 12.5 0.0 1.5 2 0 0 2 2 2 0 DNL zinc finger Rubredoxin PF00301.15 gi|529077641|ref|YP_008376644.1| - 0.056 13.3 0.3 0.19 11.6 0.1 1.9 2 0 0 2 2 2 0 Rubredoxin PhnA_Zn_Ribbon PF08274.7 gi|529077641|ref|YP_008376644.1| - 0.067 12.9 3.4 0.45 10.3 0.1 2.4 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Lar_restr_allev PF14354.1 gi|529077641|ref|YP_008376644.1| - 0.073 13.3 1.4 0.16 12.3 1.0 1.6 1 1 0 1 1 1 0 Restriction alleviation protein Lar zinc_ribbon_6 PF14599.1 gi|529077641|ref|YP_008376644.1| - 0.073 12.8 0.4 0.12 12.2 0.2 1.3 1 0 0 1 1 1 0 Zinc-ribbon DNA_RNApol_7kD PF03604.8 gi|529077641|ref|YP_008376644.1| - 0.12 11.9 1.5 2.2 7.7 0.1 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Mu-like_Com PF10122.4 gi|529077641|ref|YP_008376644.1| - 0.12 11.3 1.0 0.35 9.9 0.0 2.0 1 1 1 2 2 2 0 Mu-like prophage protein Com SoxD PF04267.7 gi|529077641|ref|YP_008376644.1| - 0.19 11.5 0.5 0.35 10.7 0.3 1.4 1 0 0 1 1 1 0 Sarcosine oxidase, delta subunit family TF_Zn_Ribbon PF08271.7 gi|529077641|ref|YP_008376644.1| - 4.2 6.7 6.5 10 5.5 4.5 1.6 1 1 0 1 1 1 0 TFIIB zinc-binding Radical_SAM PF04055.16 gi|529077642|ref|YP_008376645.1| - 9.4e-14 51.9 0.0 1.8e-13 51.0 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily MatE PF01554.13 gi|529077643|ref|YP_008376646.1| - 2.5e-57 193.0 35.4 8.8e-33 113.2 7.7 3.2 2 1 2 4 4 4 2 MatE Polysacc_synt_C PF14667.1 gi|529077643|ref|YP_008376646.1| - 5.5e-05 23.0 8.5 5.5e-05 23.0 5.9 5.4 4 3 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain L6_membrane PF05805.7 gi|529077643|ref|YP_008376646.1| - 0.86 9.1 7.5 3 7.3 0.0 3.2 3 0 0 3 3 3 0 L6 membrane protein VirB8 PF04335.8 gi|529077643|ref|YP_008376646.1| - 7.5 6.0 6.2 1.6 8.2 1.4 2.0 2 0 0 2 2 2 0 VirB8 protein DUF204 PF02659.10 gi|529077645|ref|YP_008376648.1| - 0.046 13.8 1.1 0.052 13.6 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function DUF Peptidase_M73 PF12389.3 gi|529077646|ref|YP_008376649.1| - 0.0077 15.7 0.2 0.018 14.5 0.1 1.5 1 1 0 1 1 1 1 Camelysin metallo-endopeptidase Na_Ca_ex PF01699.19 gi|529077647|ref|YP_008376650.1| - 3.3e-39 133.6 24.3 7.4e-22 77.4 6.9 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein ApoO PF09769.4 gi|529077647|ref|YP_008376650.1| - 0.18 11.4 0.5 0.34 10.6 0.3 1.4 1 0 0 1 1 1 0 Apolipoprotein O TrkA_N PF02254.13 gi|529077648|ref|YP_008376651.1| - 1.5e-33 115.2 3.5 2.7e-33 114.4 2.4 1.4 1 0 0 1 1 1 1 TrkA-N domain Na_H_Exchanger PF00999.16 gi|529077648|ref|YP_008376651.1| - 1.4e-26 92.9 49.4 1.9e-26 92.5 34.3 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_C PF02080.16 gi|529077648|ref|YP_008376651.1| - 1.4e-12 46.9 0.3 5.6e-12 45.0 0.0 2.1 2 0 0 2 2 2 1 TrkA-C domain NAD_binding_7 PF13241.1 gi|529077648|ref|YP_008376651.1| - 1.7e-06 28.2 0.4 4.2e-06 26.9 0.3 1.6 1 0 0 1 1 1 1 Putative NAD(P)-binding F420_oxidored PF03807.12 gi|529077648|ref|YP_008376651.1| - 6.4e-05 23.3 2.5 0.0017 18.7 0.2 3.3 2 1 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.1 gi|529077648|ref|YP_008376651.1| - 6.7e-05 22.9 1.8 0.00013 22.0 1.2 1.5 1 0 0 1 1 1 1 NADH(P)-binding FAD_binding_3 PF01494.14 gi|529077648|ref|YP_008376651.1| - 0.00043 19.4 0.1 0.00059 18.9 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|529077648|ref|YP_008376651.1| - 0.00049 19.5 0.2 0.00079 18.8 0.1 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.11 gi|529077648|ref|YP_008376651.1| - 0.00079 18.8 0.1 0.0019 17.6 0.1 1.7 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|529077648|ref|YP_008376651.1| - 0.0017 18.1 0.3 0.0067 16.1 0.0 2.2 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Saccharop_dh PF03435.13 gi|529077648|ref|YP_008376651.1| - 0.002 17.1 0.8 0.0029 16.6 0.5 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase XdhC_C PF13478.1 gi|529077648|ref|YP_008376651.1| - 0.0055 17.0 0.1 0.01 16.1 0.1 1.4 1 0 0 1 1 1 1 XdhC Rossmann domain 2-Hacid_dh_C PF02826.14 gi|529077648|ref|YP_008376651.1| - 0.0094 15.1 0.2 0.018 14.2 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DAO PF01266.19 gi|529077648|ref|YP_008376651.1| - 0.0095 14.8 1.0 0.018 13.9 0.7 1.6 1 1 0 1 1 1 1 FAD dependent oxidoreductase PrpR_N PF06506.6 gi|529077648|ref|YP_008376651.1| - 0.017 14.5 0.1 0.06 12.7 0.1 2.0 1 0 0 1 1 1 0 Propionate catabolism activator Epimerase PF01370.16 gi|529077648|ref|YP_008376651.1| - 0.081 12.3 0.4 0.14 11.5 0.3 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Pyr_redox_2 PF07992.9 gi|529077648|ref|YP_008376651.1| - 0.28 11.0 2.5 0.4 10.5 0.2 2.2 2 1 1 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Lactamase_B PF00753.22 gi|529077649|ref|YP_008376652.1| - 1.3e-24 86.9 9.3 1.9e-24 86.3 6.4 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|529077649|ref|YP_008376652.1| - 2.1e-05 24.1 0.4 4.3e-05 23.1 0.3 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Ribosomal_L40e PF01020.12 gi|529077650|ref|YP_008376653.1| - 2.9e-05 23.5 5.2 3.5e-05 23.3 3.6 1.2 1 0 0 1 1 1 1 Ribosomal L40e family DZR PF12773.2 gi|529077650|ref|YP_008376653.1| - 0.00079 19.1 1.1 0.00092 18.9 0.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-DHHC PF01529.15 gi|529077650|ref|YP_008376653.1| - 0.00095 18.6 0.6 0.00097 18.5 0.4 1.0 1 0 0 1 1 1 1 DHHC palmitoyltransferase zinc_ribbon_2 PF13240.1 gi|529077650|ref|YP_008376653.1| - 0.0053 16.2 0.8 0.0074 15.7 0.6 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|529077650|ref|YP_008376653.1| - 0.036 13.2 1.2 0.045 12.9 0.8 1.2 1 0 0 1 1 1 0 zinc-ribbon domain DnaJ_CXXCXGXG PF00684.14 gi|529077650|ref|YP_008376653.1| - 0.043 13.8 1.4 0.048 13.7 1.0 1.1 1 0 0 1 1 1 0 DnaJ central domain DNA_RNApol_7kD PF03604.8 gi|529077650|ref|YP_008376653.1| - 0.18 11.2 6.4 0.51 9.8 4.5 1.7 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Toxin_5 PF05294.8 gi|529077650|ref|YP_008376653.1| - 0.36 11.0 3.2 0.45 10.7 2.2 1.2 1 0 0 1 1 1 0 Scorpion short toxin Ribosomal_L37e PF01907.14 gi|529077650|ref|YP_008376653.1| - 1.7 8.5 4.9 2.6 7.9 3.4 1.4 1 1 0 1 1 1 0 Ribosomal protein L37e MR_MLE_C PF13378.1 gi|529077651|ref|YP_008376654.1| - 0.011 15.6 0.0 0.022 14.7 0.0 1.5 1 0 0 1 1 1 0 Enolase C-terminal domain-like MAAL_C PF07476.6 gi|529077651|ref|YP_008376654.1| - 0.2 10.5 0.0 0.31 9.9 0.0 1.2 1 0 0 1 1 1 0 Methylaspartate ammonia-lyase C-terminus DUF367 PF04034.8 gi|529077652|ref|YP_008376655.1| - 9.2e-45 151.3 0.0 1.1e-44 151.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF367) RLI PF04068.10 gi|529077652|ref|YP_008376655.1| - 7.8e-08 31.7 0.0 1.3e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI Glyco_trans_1_4 PF13692.1 gi|529077652|ref|YP_008376655.1| - 0.11 12.6 0.0 0.17 12.0 0.0 1.3 1 1 0 1 1 1 0 Glycosyl transferases group 1 AhpC-TSA PF00578.16 gi|529077653|ref|YP_008376656.1| - 5.9e-26 90.5 0.0 1e-25 89.7 0.0 1.4 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|529077653|ref|YP_008376656.1| - 1.3e-17 63.6 0.0 2.3e-17 62.8 0.0 1.4 1 0 0 1 1 1 1 Redoxin DUF1771 PF08590.5 gi|529077653|ref|YP_008376656.1| - 0.027 14.4 1.0 0.078 13.0 0.7 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF1771) DUF4398 PF14346.1 gi|529077653|ref|YP_008376656.1| - 3.1 7.8 8.1 0.9 9.6 0.8 3.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4398) SnoaL_2 PF12680.2 gi|529077654|ref|YP_008376657.1| - 1.4e-09 38.2 0.5 1.7e-09 38.0 0.4 1.1 1 0 0 1 1 1 1 SnoaL-like domain SnoaL_4 PF13577.1 gi|529077654|ref|YP_008376657.1| - 8.3e-06 25.7 0.1 1.8e-05 24.6 0.0 1.6 1 1 1 2 2 2 1 SnoaL-like domain NTF2 PF02136.15 gi|529077654|ref|YP_008376657.1| - 0.0024 18.2 0.0 0.0026 18.1 0.0 1.2 1 0 0 1 1 1 1 Nuclear transport factor 2 (NTF2) domain DUF4440 PF14534.1 gi|529077654|ref|YP_008376657.1| - 0.0032 17.6 0.3 0.033 14.3 0.0 1.9 1 1 1 2 2 2 1 Domain of unknown function (DUF4440) SRP54 PF00448.17 gi|529077655|ref|YP_008376658.1| - 3.2e-67 225.7 0.1 5.7e-67 224.9 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|529077655|ref|YP_008376658.1| - 5.1e-11 42.5 0.8 1.2e-10 41.3 0.5 1.5 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain APS_kinase PF01583.15 gi|529077655|ref|YP_008376658.1| - 7.6e-07 28.9 0.0 1.8e-06 27.6 0.0 1.6 1 0 0 1 1 1 1 Adenylylsulphate kinase MobB PF03205.9 gi|529077655|ref|YP_008376658.1| - 5.4e-05 22.9 0.2 0.00017 21.2 0.1 2.0 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B CbiA PF01656.18 gi|529077655|ref|YP_008376658.1| - 0.00011 21.6 0.8 0.00081 18.8 0.6 2.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Zeta_toxin PF06414.7 gi|529077655|ref|YP_008376658.1| - 0.00044 19.4 0.0 0.0008 18.5 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_19 PF13245.1 gi|529077655|ref|YP_008376658.1| - 0.00047 19.8 0.0 0.0016 18.1 0.0 2.0 1 0 0 1 1 1 1 Part of AAA domain AAA_22 PF13401.1 gi|529077655|ref|YP_008376658.1| - 0.00086 19.4 0.3 0.0033 17.5 0.0 2.0 2 1 0 2 2 2 1 AAA domain Thymidylate_kin PF02223.12 gi|529077655|ref|YP_008376658.1| - 0.00087 18.7 0.0 0.0068 15.8 0.0 2.1 2 0 0 2 2 2 1 Thymidylate kinase AAA_16 PF13191.1 gi|529077655|ref|YP_008376658.1| - 0.00088 19.3 0.0 0.00088 19.3 0.0 2.5 1 1 1 2 2 2 1 AAA ATPase domain AAA_33 PF13671.1 gi|529077655|ref|YP_008376658.1| - 0.0025 17.6 0.0 0.013 15.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|529077655|ref|YP_008376658.1| - 0.0031 17.4 2.8 0.0054 16.7 0.0 2.6 3 0 0 3 3 3 1 AAA domain AAA_17 PF13207.1 gi|529077655|ref|YP_008376658.1| - 0.0037 18.0 0.3 0.0037 18.0 0.2 2.6 2 2 0 2 2 2 1 AAA domain KTI12 PF08433.5 gi|529077655|ref|YP_008376658.1| - 0.0041 16.3 0.0 0.0071 15.5 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 NTPase_1 PF03266.10 gi|529077655|ref|YP_008376658.1| - 0.0041 16.8 0.1 0.0089 15.7 0.1 1.5 1 0 0 1 1 1 1 NTPase DUF2075 PF09848.4 gi|529077655|ref|YP_008376658.1| - 0.012 14.6 0.0 0.019 13.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) cobW PF02492.14 gi|529077655|ref|YP_008376658.1| - 0.017 14.5 0.7 0.036 13.4 0.1 1.8 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_18 PF13238.1 gi|529077655|ref|YP_008376658.1| - 0.024 14.9 0.0 0.063 13.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain PPK2 PF03976.9 gi|529077655|ref|YP_008376658.1| - 0.024 13.9 0.0 0.041 13.1 0.0 1.3 1 0 0 1 1 1 0 Polyphosphate kinase 2 (PPK2) ArsA_ATPase PF02374.10 gi|529077655|ref|YP_008376658.1| - 0.044 12.8 0.1 0.096 11.7 0.0 1.5 1 0 0 1 1 1 0 Anion-transporting ATPase AAA_14 PF13173.1 gi|529077655|ref|YP_008376658.1| - 0.059 13.2 0.0 0.14 12.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|529077655|ref|YP_008376658.1| - 0.06 12.8 0.1 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA PF00004.24 gi|529077655|ref|YP_008376658.1| - 0.067 13.3 0.1 0.19 11.9 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|529077655|ref|YP_008376658.1| - 0.12 11.9 0.1 0.35 10.4 0.0 1.8 2 0 0 2 2 1 0 P-loop containing region of AAA domain NACHT PF05729.7 gi|529077655|ref|YP_008376658.1| - 0.13 11.9 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 NACHT domain DUF258 PF03193.11 gi|529077655|ref|YP_008376658.1| - 0.14 11.3 0.0 0.23 10.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 6PF2K PF01591.13 gi|529077655|ref|YP_008376658.1| - 0.15 11.1 0.0 0.26 10.3 0.0 1.3 1 0 0 1 1 1 0 6-phosphofructo-2-kinase AAA_23 PF13476.1 gi|529077655|ref|YP_008376658.1| - 0.18 12.1 0.0 0.32 11.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain Prefoldin PF02996.12 gi|529077656|ref|YP_008376659.1| - 2.1e-25 88.6 10.7 2.1e-25 88.6 7.4 2.3 1 1 2 3 3 3 1 Prefoldin subunit IncA PF04156.9 gi|529077656|ref|YP_008376659.1| - 0.00028 20.5 28.1 0.018 14.6 10.9 2.0 2 0 0 2 2 2 2 IncA protein DUF972 PF06156.8 gi|529077656|ref|YP_008376659.1| - 0.00091 19.5 17.4 0.0094 16.2 0.3 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF972) Prefoldin_2 PF01920.15 gi|529077656|ref|YP_008376659.1| - 0.001 18.8 12.4 0.001 18.8 8.6 3.6 2 2 1 3 3 3 2 Prefoldin subunit MCH PF02289.11 gi|529077656|ref|YP_008376659.1| - 0.0025 16.9 0.2 0.0041 16.2 0.2 1.3 1 0 0 1 1 1 1 Cyclohydrolase (MCH) Sipho_Gp157 PF05565.6 gi|529077656|ref|YP_008376659.1| - 0.0029 17.2 16.9 0.072 12.6 5.6 2.3 2 0 0 2 2 2 2 Siphovirus Gp157 DUF4618 PF15397.1 gi|529077656|ref|YP_008376659.1| - 0.0042 16.4 17.9 0.12 11.7 1.9 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4618) Tropomyosin_1 PF12718.2 gi|529077656|ref|YP_008376659.1| - 0.0053 16.6 30.5 0.027 14.3 4.0 2.1 2 0 0 2 2 2 1 Tropomyosin like APG6 PF04111.7 gi|529077656|ref|YP_008376659.1| - 0.0056 15.7 27.6 0.14 11.1 10.5 2.0 2 0 0 2 2 2 2 Autophagy protein Apg6 Prefoldin_3 PF13758.1 gi|529077656|ref|YP_008376659.1| - 0.0067 16.1 6.1 0.0067 16.1 4.2 2.5 1 1 1 2 2 2 1 Prefoldin subunit DivIC PF04977.10 gi|529077656|ref|YP_008376659.1| - 0.0073 15.7 8.5 0.0073 15.7 5.9 3.2 2 1 0 2 2 1 1 Septum formation initiator Lzipper-MIP1 PF14389.1 gi|529077656|ref|YP_008376659.1| - 0.0074 16.3 6.4 0.0074 16.3 4.4 2.4 2 0 0 2 2 2 1 Leucine-zipper of ternary complex factor MIP1 CENP-F_leu_zip PF10473.4 gi|529077656|ref|YP_008376659.1| - 0.01 15.7 24.3 0.2 11.5 2.1 2.3 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 NPV_P10 PF05531.7 gi|529077656|ref|YP_008376659.1| - 0.01 16.0 21.5 0.12 12.6 2.6 2.7 2 2 0 2 2 2 0 Nucleopolyhedrovirus P10 protein Spc24 PF08286.6 gi|529077656|ref|YP_008376659.1| - 0.012 15.2 22.8 0.02 14.5 0.5 2.2 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 Ax_dynein_light PF10211.4 gi|529077656|ref|YP_008376659.1| - 0.014 15.2 26.1 0.089 12.6 2.2 2.1 2 0 0 2 2 2 0 Axonemal dynein light chain Baculo_PEP_C PF04513.7 gi|529077656|ref|YP_008376659.1| - 0.017 14.9 10.3 0.71 9.7 3.7 2.2 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Laminin_II PF06009.7 gi|529077656|ref|YP_008376659.1| - 0.024 14.4 12.5 0.65 9.7 0.4 2.2 2 0 0 2 2 2 0 Laminin Domain II Fib_alpha PF08702.5 gi|529077656|ref|YP_008376659.1| - 0.032 14.3 17.5 0.32 11.1 7.1 2.3 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family GAS PF13851.1 gi|529077656|ref|YP_008376659.1| - 0.033 13.4 20.0 0.24 10.5 1.4 2.1 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding bZIP_1 PF00170.16 gi|529077656|ref|YP_008376659.1| - 0.058 13.3 16.1 0.069 13.1 1.4 2.6 2 1 0 2 2 2 0 bZIP transcription factor TMF_TATA_bd PF12325.3 gi|529077656|ref|YP_008376659.1| - 0.064 12.9 26.3 0.051 13.3 2.8 2.2 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding BLOC1_2 PF10046.4 gi|529077656|ref|YP_008376659.1| - 0.066 13.3 23.0 0.078 13.1 2.5 2.7 2 1 1 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 TBPIP PF07106.8 gi|529077656|ref|YP_008376659.1| - 0.067 12.7 26.7 0.68 9.4 10.9 2.1 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF4515 PF14988.1 gi|529077656|ref|YP_008376659.1| - 0.073 12.7 26.1 0.14 11.8 9.5 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4515) DUF4337 PF14235.1 gi|529077656|ref|YP_008376659.1| - 0.087 12.6 22.7 0.5 10.1 9.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4337) AAA_13 PF13166.1 gi|529077656|ref|YP_008376659.1| - 0.1 11.0 19.5 0.47 8.8 5.4 2.0 2 0 0 2 2 2 0 AAA domain Mod_r PF07200.8 gi|529077656|ref|YP_008376659.1| - 0.1 12.5 22.8 0.17 11.8 8.8 2.1 2 0 0 2 2 2 0 Modifier of rudimentary (Mod(r)) protein Uso1_p115_C PF04871.8 gi|529077656|ref|YP_008376659.1| - 0.1 12.5 22.7 0.88 9.5 7.9 2.2 2 0 0 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region Tektin PF03148.9 gi|529077656|ref|YP_008376659.1| - 0.1 11.0 19.1 0.36 9.3 5.2 2.2 2 0 0 2 2 2 0 Tektin family DUF342 PF03961.8 gi|529077656|ref|YP_008376659.1| - 0.11 10.8 17.9 0.5 8.7 5.4 2.0 1 1 0 2 2 2 0 Protein of unknown function (DUF342) CorA PF01544.13 gi|529077656|ref|YP_008376659.1| - 0.13 11.2 20.2 1.6 7.7 14.0 2.0 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein ORF6C PF10552.4 gi|529077656|ref|YP_008376659.1| - 0.13 11.9 15.6 0.14 11.8 1.6 2.3 2 0 0 2 2 2 0 ORF6C domain YlqD PF11068.3 gi|529077656|ref|YP_008376659.1| - 0.14 12.2 35.2 0.11 12.5 2.7 2.5 2 1 0 2 2 2 0 YlqD protein DUF4446 PF14584.1 gi|529077656|ref|YP_008376659.1| - 0.16 11.7 11.9 1.2 8.9 4.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4446) MtrB PF05440.7 gi|529077656|ref|YP_008376659.1| - 0.17 11.9 2.4 6.5 6.8 0.0 2.4 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase subunit B DUF2730 PF10805.3 gi|529077656|ref|YP_008376659.1| - 0.19 11.4 10.6 1.6 8.4 1.8 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF2730) MCPsignal PF00015.16 gi|529077656|ref|YP_008376659.1| - 0.2 11.1 19.1 0.25 10.8 3.9 2.2 1 1 1 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DivIVA PF05103.8 gi|529077656|ref|YP_008376659.1| - 0.2 11.6 26.5 0.66 10.0 3.9 2.2 2 0 0 2 2 2 0 DivIVA protein DEK_C PF08766.6 gi|529077656|ref|YP_008376659.1| - 0.22 11.3 6.9 2.1 8.1 0.2 2.9 3 0 0 3 3 2 0 DEK C terminal domain DUF3086 PF11285.3 gi|529077656|ref|YP_008376659.1| - 0.27 10.0 12.0 0.21 10.3 0.6 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3086) Seryl_tRNA_N PF02403.17 gi|529077656|ref|YP_008376659.1| - 0.29 11.1 22.8 0.19 11.7 2.0 2.7 2 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Syntaxin-6_N PF09177.6 gi|529077656|ref|YP_008376659.1| - 0.32 11.4 17.2 0.5 10.8 2.0 2.3 2 0 0 2 2 2 0 Syntaxin 6, N-terminal Cytochrom_C_2 PF01322.15 gi|529077656|ref|YP_008376659.1| - 0.33 11.5 14.4 0.19 12.3 5.4 2.1 1 1 1 2 2 2 0 Cytochrome C' DUF3450 PF11932.3 gi|529077656|ref|YP_008376659.1| - 0.33 10.1 31.9 0.51 9.5 14.5 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) Cep57_MT_bd PF06657.8 gi|529077656|ref|YP_008376659.1| - 0.34 10.8 20.1 0.53 10.2 0.4 2.4 2 1 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 Vps51 PF08700.6 gi|529077656|ref|YP_008376659.1| - 0.39 10.6 11.5 1.6 8.6 3.0 2.8 2 1 0 2 2 2 0 Vps51/Vps67 EzrA PF06160.7 gi|529077656|ref|YP_008376659.1| - 0.4 8.7 24.3 0.13 10.4 3.6 2.1 2 0 0 2 2 2 0 Septation ring formation regulator, EzrA YqjK PF13997.1 gi|529077656|ref|YP_008376659.1| - 0.43 10.7 0.0 0.43 10.7 0.0 2.7 2 1 1 3 3 1 0 YqjK-like protein Ribosomal_S7e PF01251.13 gi|529077656|ref|YP_008376659.1| - 0.43 10.0 9.8 0.28 10.6 0.1 2.1 2 0 0 2 2 2 0 Ribosomal protein S7e LLC1 PF14945.1 gi|529077656|ref|YP_008376659.1| - 0.44 10.8 6.4 3.1 8.1 0.1 2.2 2 0 0 2 2 2 0 Normal lung function maintenance, Low in Lung Cancer 1 protein MIS13 PF08202.6 gi|529077656|ref|YP_008376659.1| - 0.47 9.4 13.2 0.69 8.9 9.2 1.2 1 0 0 1 1 1 0 Mis12-Mtw1 protein family Fzo_mitofusin PF04799.8 gi|529077656|ref|YP_008376659.1| - 0.51 9.6 15.4 1.4 8.3 5.6 2.1 2 0 0 2 2 2 0 fzo-like conserved region DUF3552 PF12072.3 gi|529077656|ref|YP_008376659.1| - 0.6 9.2 28.9 0.78 8.9 11.5 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3552) FliD_C PF07195.7 gi|529077656|ref|YP_008376659.1| - 0.62 9.3 15.3 0.21 10.8 5.8 2.1 2 0 0 2 2 2 0 Flagellar hook-associated protein 2 C-terminus CENP-Q PF13094.1 gi|529077656|ref|YP_008376659.1| - 0.76 9.7 21.1 1.1 9.2 7.8 2.3 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit Reo_sigmaC PF04582.7 gi|529077656|ref|YP_008376659.1| - 0.77 8.8 7.8 2.5 7.1 0.1 2.0 1 1 0 2 2 2 0 Reovirus sigma C capsid protein DUF2353 PF09789.4 gi|529077656|ref|YP_008376659.1| - 0.78 8.9 19.2 0.14 11.4 1.7 2.1 1 1 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) FH2 PF02181.18 gi|529077656|ref|YP_008376659.1| - 0.8 8.5 12.1 0.16 10.7 3.3 2.0 2 0 0 2 2 2 0 Formin Homology 2 Domain Spc7 PF08317.6 gi|529077656|ref|YP_008376659.1| - 0.83 8.2 23.7 0.53 8.8 3.3 2.1 2 0 0 2 2 2 0 Spc7 kinetochore protein DASH_Dam1 PF08653.5 gi|529077656|ref|YP_008376659.1| - 0.87 9.4 9.7 5.2 6.9 2.8 2.8 2 1 0 2 2 2 0 DASH complex subunit Dam1 Synaptobrevin PF00957.16 gi|529077656|ref|YP_008376659.1| - 0.87 9.2 17.8 0.12 11.9 5.0 2.3 2 0 0 2 2 2 0 Synaptobrevin DUF904 PF06005.7 gi|529077656|ref|YP_008376659.1| - 0.89 9.8 31.1 0.65 10.3 10.3 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF904) DUF1664 PF07889.7 gi|529077656|ref|YP_008376659.1| - 1 9.1 17.8 2.9 7.6 2.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) DUF1515 PF07439.6 gi|529077656|ref|YP_008376659.1| - 1.1 9.1 11.9 0.39 10.5 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1515) DUF4225 PF13988.1 gi|529077656|ref|YP_008376659.1| - 1.3 8.5 15.4 2.2 7.7 0.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4225) AAA_23 PF13476.1 gi|529077656|ref|YP_008376659.1| - 1.3 9.3 27.7 1.9 8.7 9.0 2.0 2 0 0 2 2 2 0 AAA domain DIRP PF06584.8 gi|529077656|ref|YP_008376659.1| - 1.3 8.9 7.2 1.3 8.9 0.1 2.2 2 0 0 2 2 2 0 DIRP GP41 PF00517.12 gi|529077656|ref|YP_008376659.1| - 1.4 8.4 13.8 2.8 7.4 0.2 2.3 2 0 0 2 2 2 0 Retroviral envelope protein TraF_2 PF13729.1 gi|529077656|ref|YP_008376659.1| - 1.4 7.6 11.6 0.7 8.6 5.0 1.9 1 1 1 2 2 2 0 F plasmid transfer operon, TraF, protein Cluap1 PF10234.4 gi|529077656|ref|YP_008376659.1| - 1.4 8.0 17.9 2.7 7.1 6.1 2.1 2 0 0 2 2 2 0 Clusterin-associated protein-1 DUF948 PF06103.6 gi|529077656|ref|YP_008376659.1| - 1.6 8.6 15.7 0.39 10.5 1.2 2.3 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Cauli_AT PF03233.8 gi|529077656|ref|YP_008376659.1| - 1.8 8.2 8.3 4.7 6.9 0.1 2.2 2 0 0 2 2 2 0 Aphid transmission protein DUF607 PF04678.8 gi|529077656|ref|YP_008376659.1| - 1.9 8.3 15.0 1.1 9.1 4.5 2.2 1 1 1 2 2 2 0 Protein of unknown function, DUF607 Fmp27_WPPW PF10359.4 gi|529077656|ref|YP_008376659.1| - 2 6.7 16.0 2.7 6.3 5.9 2.0 2 0 0 2 2 2 0 RNA pol II promoter Fmp27 protein domain ERM PF00769.14 gi|529077656|ref|YP_008376659.1| - 2.1 7.8 33.2 6 6.3 7.1 2.1 1 1 1 2 2 2 0 Ezrin/radixin/moesin family Sas10_Utp3 PF04000.10 gi|529077656|ref|YP_008376659.1| - 2.2 8.5 12.0 8.8 6.5 0.4 2.3 2 0 0 2 2 2 0 Sas10/Utp3/C1D family OmpH PF03938.9 gi|529077656|ref|YP_008376659.1| - 2.2 8.1 37.5 1.9 8.3 17.7 2.1 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) Nup54 PF13874.1 gi|529077656|ref|YP_008376659.1| - 2.3 7.8 20.6 0.53 9.9 0.6 2.1 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 TraB PF01963.12 gi|529077656|ref|YP_008376659.1| - 2.4 7.5 15.3 7.8 5.8 6.7 2.1 2 0 0 2 2 2 0 TraB family DUF2312 PF10073.4 gi|529077656|ref|YP_008376659.1| - 2.8 7.3 16.1 4 6.8 3.5 2.7 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2312) DUF812 PF05667.6 gi|529077656|ref|YP_008376659.1| - 3 6.2 32.0 2.5 6.5 4.8 2.0 1 1 0 2 2 2 0 Protein of unknown function (DUF812) Phage_GP20 PF06810.6 gi|529077656|ref|YP_008376659.1| - 3.1 7.2 28.0 2 7.8 2.2 2.1 2 0 0 2 2 2 0 Phage minor structural protein GP20 ADIP PF11559.3 gi|529077656|ref|YP_008376659.1| - 3.2 7.6 24.8 1.5 8.7 10.0 2.1 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding Nsp1_C PF05064.8 gi|529077656|ref|YP_008376659.1| - 3.2 7.4 24.5 0.71 9.5 2.6 2.3 2 0 0 2 2 2 0 Nsp1-like C-terminal region Occludin_ELL PF07303.8 gi|529077656|ref|YP_008376659.1| - 3.3 8.4 14.4 14 6.4 5.1 2.3 2 0 0 2 2 2 0 Occludin homology domain NTR2 PF15458.1 gi|529077656|ref|YP_008376659.1| - 3.4 6.8 27.4 2.6 7.2 8.3 2.2 2 0 0 2 2 2 0 Nineteen complex-related protein 2 TSC22 PF01166.13 gi|529077656|ref|YP_008376659.1| - 3.6 7.6 22.6 0.089 12.7 7.0 2.5 2 1 0 2 2 2 0 TSC-22/dip/bun family DAGK_cat PF00781.19 gi|529077656|ref|YP_008376659.1| - 3.6 7.0 5.8 0.58 9.6 0.5 2.0 1 1 0 2 2 2 0 Diacylglycerol kinase catalytic domain WXG100 PF06013.7 gi|529077656|ref|YP_008376659.1| - 3.6 7.6 28.1 1.6 8.8 1.7 2.4 2 0 0 2 2 2 0 Proteins of 100 residues with WXG Jnk-SapK_ap_N PF09744.4 gi|529077656|ref|YP_008376659.1| - 4.4 7.2 18.6 3.5 7.6 6.2 2.1 2 0 0 2 2 2 0 JNK_SAPK-associated protein-1 DUF3373 PF11853.3 gi|529077656|ref|YP_008376659.1| - 5.3 5.4 21.4 1.1 7.7 1.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3373) CDC37_N PF03234.9 gi|529077656|ref|YP_008376659.1| - 5.3 7.3 19.9 8.5 6.6 13.8 1.4 1 1 0 1 1 1 0 Cdc37 N terminal kinase binding DUF4200 PF13863.1 gi|529077656|ref|YP_008376659.1| - 5.4 6.9 36.7 0.11 12.3 7.4 3.1 2 1 1 3 3 3 0 Domain of unknown function (DUF4200) Not3 PF04065.10 gi|529077656|ref|YP_008376659.1| - 5.4 6.2 24.3 4.7 6.4 10.1 2.1 2 0 0 2 2 2 0 Not1 N-terminal domain, CCR4-Not complex component DUF2400 PF09674.5 gi|529077656|ref|YP_008376659.1| - 5.8 6.5 9.2 12 5.4 0.3 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF2400) DUF3251 PF11622.3 gi|529077656|ref|YP_008376659.1| - 5.9 6.2 13.5 18 4.7 6.8 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3251) Mnd1 PF03962.10 gi|529077656|ref|YP_008376659.1| - 6.1 6.4 28.3 0.95 9.0 2.3 2.1 2 0 0 2 2 2 0 Mnd1 family V_ATPase_I PF01496.14 gi|529077656|ref|YP_008376659.1| - 6.2 4.5 23.1 1.8 6.3 2.7 2.0 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family DUF2317 PF10079.4 gi|529077656|ref|YP_008376659.1| - 6.4 5.2 18.8 3.3 6.2 7.4 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2317) DUF3847 PF12958.2 gi|529077656|ref|YP_008376659.1| - 6.7 6.5 24.6 1.2 8.9 3.5 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF3847) Hid1 PF12722.2 gi|529077656|ref|YP_008376659.1| - 7 4.1 8.2 7.8 4.0 5.6 1.1 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein DUF4140 PF13600.1 gi|529077656|ref|YP_008376659.1| - 7.2 7.1 27.6 1.7 9.1 6.3 3.0 1 1 2 3 3 3 0 N-terminal domain of unknown function (DUF4140) Prominin PF05478.6 gi|529077656|ref|YP_008376659.1| - 7.6 3.9 12.7 67 0.8 8.8 1.9 1 1 0 1 1 1 0 Prominin Tho2 PF11262.3 gi|529077656|ref|YP_008376659.1| - 9.6 5.1 12.1 2.9 6.8 3.5 2.0 2 0 0 2 2 2 0 Transcription factor/nuclear export subunit protein 2 Vfa1 PF08432.5 gi|529077656|ref|YP_008376659.1| - 9.7 6.1 17.5 19 5.1 12.1 1.4 1 1 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 Muted PF14942.1 gi|529077656|ref|YP_008376659.1| - 9.7 6.0 21.3 5.2 6.9 8.4 2.1 2 0 0 2 2 2 0 Organelle biogenesis, Muted-like protein Ribosomal_L18ae PF01775.12 gi|529077657|ref|YP_008376660.1| - 8.2e-10 38.6 0.0 8.7e-10 38.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal L18ae/LX protein domain Aldolase PF01081.14 gi|529077658|ref|YP_008376661.1| - 2.2e-40 137.9 2.3 2.7e-40 137.6 1.6 1.0 1 0 0 1 1 1 1 KDPG and KHG aldolase TMP-TENI PF02581.12 gi|529077658|ref|YP_008376661.1| - 0.00088 18.4 2.6 0.0084 15.2 1.8 2.8 1 1 0 1 1 1 1 Thiamine monophosphate synthase/TENI TIM-br_sig_trns PF09370.5 gi|529077658|ref|YP_008376661.1| - 0.013 14.5 0.1 0.033 13.2 0.1 1.6 1 1 0 1 1 1 0 TIM-barrel signal transduction protein DJ-1_PfpI PF01965.19 gi|529077658|ref|YP_008376661.1| - 0.059 12.8 1.2 0.3 10.5 0.1 2.4 1 1 1 2 2 2 0 DJ-1/PfpI family NMO PF03060.10 gi|529077658|ref|YP_008376661.1| - 0.069 12.2 0.0 0.069 12.2 0.0 3.2 2 2 1 3 3 3 0 Nitronate monooxygenase Ribul_P_3_epim PF00834.14 gi|529077658|ref|YP_008376661.1| - 0.22 10.6 1.9 0.53 9.3 0.0 2.4 3 0 0 3 3 3 0 Ribulose-phosphate 3 epimerase family DHO_dh PF01180.16 gi|529077658|ref|YP_008376661.1| - 0.74 8.7 6.4 19 4.0 0.2 3.0 1 1 2 3 3 3 0 Dihydroorotate dehydrogenase Hexapep_2 PF14602.1 gi|529077658|ref|YP_008376661.1| - 0.96 9.0 3.7 0.57 9.7 0.3 2.4 2 0 0 2 2 2 0 Hexapeptide repeat of succinyl-transferase TAT_signal PF10518.4 gi|529077660|ref|YP_008376663.1| - 0.0017 18.2 0.1 0.0033 17.2 0.1 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Aldo_ket_red PF00248.16 gi|529077661|ref|YP_008376664.1| - 4.8e-26 91.2 0.0 5.7e-26 90.9 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family Methyltransf_11 PF08241.7 gi|529077662|ref|YP_008376665.1| - 3.4e-11 43.4 0.0 5.6e-11 42.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|529077662|ref|YP_008376665.1| - 8.2e-07 29.3 0.0 1.5e-06 28.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|529077662|ref|YP_008376665.1| - 2.1e-05 24.5 6.6 5.4e-05 23.1 4.5 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|529077662|ref|YP_008376665.1| - 0.00023 20.7 0.0 0.0003 20.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|529077662|ref|YP_008376665.1| - 0.00046 20.7 0.2 0.00085 19.8 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|529077662|ref|YP_008376665.1| - 0.0021 17.1 0.0 0.0028 16.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_12 PF08242.7 gi|529077662|ref|YP_008376665.1| - 0.0025 18.2 0.0 0.0042 17.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain CobU PF02283.11 gi|529077662|ref|YP_008376665.1| - 0.0068 15.8 0.1 2.7 7.3 0.0 2.2 2 0 0 2 2 2 2 Cobinamide kinase / cobinamide phosphate guanyltransferase Methyltransf_24 PF13578.1 gi|529077662|ref|YP_008376665.1| - 0.0098 16.7 1.3 0.021 15.6 0.3 2.0 2 1 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|529077662|ref|YP_008376665.1| - 0.011 14.8 0.0 0.018 14.1 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|529077662|ref|YP_008376665.1| - 0.011 15.4 0.0 0.017 14.8 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain CMAS PF02353.15 gi|529077662|ref|YP_008376665.1| - 0.034 13.2 0.0 0.054 12.5 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase PE PF00934.15 gi|529077662|ref|YP_008376665.1| - 0.054 13.5 0.5 0.054 13.5 0.3 3.2 3 1 0 3 3 3 0 PE family Polyketide_cyc2 PF10604.4 gi|529077663|ref|YP_008376666.1| - 1.3e-05 25.4 2.4 1.5e-05 25.2 1.7 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|529077663|ref|YP_008376666.1| - 0.0078 16.1 0.0 0.0084 16.1 0.0 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport P5CR_dimer PF14748.1 gi|529077663|ref|YP_008376666.1| - 0.097 12.6 1.1 0.16 11.9 0.8 1.5 1 1 0 1 1 1 0 Pyrroline-5-carboxylate reductase dimerisation HTH_10 PF04967.7 gi|529077664|ref|YP_008376667.1| - 2e-19 68.9 0.1 9.2e-19 66.7 0.1 2.1 2 0 0 2 2 2 1 HTH DNA binding domain HTH_IclR PF09339.5 gi|529077664|ref|YP_008376667.1| - 0.0014 18.1 0.6 0.0039 16.7 0.0 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|529077664|ref|YP_008376667.1| - 0.0028 17.2 0.0 0.0087 15.7 0.0 1.9 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|529077664|ref|YP_008376667.1| - 0.0041 16.4 0.0 0.009 15.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|529077664|ref|YP_008376667.1| - 0.0079 15.9 0.9 0.017 14.8 0.2 2.1 2 1 0 2 2 2 1 Helix-turn-helix domain PuR_N PF09182.5 gi|529077664|ref|YP_008376667.1| - 0.024 14.2 0.0 0.045 13.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial purine repressor, N-terminal HTH_29 PF13551.1 gi|529077664|ref|YP_008376667.1| - 0.026 14.6 0.1 0.051 13.7 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn helix HTH_38 PF13936.1 gi|529077664|ref|YP_008376667.1| - 0.037 13.5 0.0 0.067 12.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|529077664|ref|YP_008376667.1| - 0.065 13.1 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_AsnC-type PF13404.1 gi|529077664|ref|YP_008376667.1| - 0.085 12.4 0.1 0.29 10.7 0.0 2.0 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain MarR PF01047.17 gi|529077664|ref|YP_008376667.1| - 0.1 12.3 0.0 0.23 11.1 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_5 PF01022.15 gi|529077664|ref|YP_008376667.1| - 0.11 12.1 0.3 0.37 10.4 0.1 1.9 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Inositol_P PF00459.20 gi|529077665|ref|YP_008376668.1| - 4.1e-46 157.4 0.5 5e-46 157.1 0.4 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.15 gi|529077665|ref|YP_008376668.1| - 0.02 13.7 0.0 0.035 12.9 0.0 1.4 1 0 0 1 1 1 0 Fructose-1-6-bisphosphatase Glyco_hydro_cc PF11790.3 gi|529077667|ref|YP_008376670.1| - 2e-10 40.4 0.0 3.1e-10 39.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase catalytic core Glyco_hydro_42 PF02449.10 gi|529077667|ref|YP_008376670.1| - 0.0022 17.1 0.0 0.0042 16.2 0.0 1.4 1 0 0 1 1 1 1 Beta-galactosidase Glyco_hydro_14 PF01373.12 gi|529077667|ref|YP_008376670.1| - 0.0048 15.7 0.0 0.0078 14.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 14 Glyco_hydro_53 PF07745.8 gi|529077667|ref|YP_008376670.1| - 0.072 11.8 0.0 0.12 11.1 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 53 Exo_endo_phos PF03372.18 gi|529077668|ref|YP_008376671.1| - 4.1e-31 108.8 0.9 5.2e-31 108.4 0.6 1.1 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family MFS_1 PF07690.11 gi|529077669|ref|YP_008376672.1| - 8.7e-23 80.5 51.5 3.9e-17 62.0 15.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF1228 PF06779.9 gi|529077669|ref|YP_008376672.1| - 0.0016 18.3 3.3 0.0016 18.3 2.3 4.2 3 1 2 5 5 5 1 Protein of unknown function (DUF1228) Regulator_TrmB PF11495.3 gi|529077670|ref|YP_008376673.1| - 1.9e-36 125.2 0.1 2.5e-36 124.8 0.0 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.14 gi|529077670|ref|YP_008376673.1| - 1.9e-14 53.0 0.0 3.8e-14 52.1 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.9 gi|529077670|ref|YP_008376673.1| - 0.018 14.8 0.0 0.05 13.3 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family MarR_2 PF12802.2 gi|529077670|ref|YP_008376673.1| - 0.077 12.6 0.2 0.25 11.0 0.0 2.0 2 0 0 2 2 2 0 MarR family HTH_IclR PF09339.5 gi|529077670|ref|YP_008376673.1| - 0.1 12.1 0.0 0.23 11.1 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF2250 PF10007.4 gi|529077670|ref|YP_008376673.1| - 0.12 12.3 0.0 0.31 10.9 0.0 1.7 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Usp PF00582.21 gi|529077671|ref|YP_008376674.1| - 3.7e-29 101.6 0.4 4.7e-29 101.3 0.3 1.1 1 0 0 1 1 1 1 Universal stress protein family 2-Hacid_dh_C PF02826.14 gi|529077673|ref|YP_008376676.1| - 3.1e-48 163.2 0.0 5.1e-48 162.5 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|529077673|ref|YP_008376676.1| - 1.8e-32 111.5 0.2 4.9e-32 110.1 0.1 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACT PF01842.20 gi|529077673|ref|YP_008376676.1| - 4.5e-08 32.3 0.0 1.9e-07 30.4 0.0 2.2 1 0 0 1 1 1 1 ACT domain Peptidase_M48 PF01435.13 gi|529077674|ref|YP_008376677.1| - 5.2e-39 134.1 0.0 9.1e-39 133.3 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M48 DUF2268 PF10026.4 gi|529077674|ref|YP_008376677.1| - 0.012 15.0 0.0 0.086 12.2 0.0 1.9 2 0 0 2 2 2 0 Predicted Zn-dependent protease (DUF2268) Peptidase_M56 PF05569.6 gi|529077674|ref|YP_008376677.1| - 0.083 11.8 0.9 0.41 9.5 0.0 2.3 2 0 0 2 2 2 0 BlaR1 peptidase M56 DnaJ PF00226.26 gi|529077675|ref|YP_008376678.1| - 3.5e-13 49.0 0.0 5.7e-13 48.3 0.0 1.3 1 0 0 1 1 1 1 DnaJ domain RPT PF13446.1 gi|529077675|ref|YP_008376678.1| - 0.062 12.7 0.0 0.1 11.9 0.0 1.5 1 0 0 1 1 1 0 A repeated domain in UCH-protein DUF1469 PF07332.6 gi|529077675|ref|YP_008376678.1| - 0.18 11.5 9.3 0.27 10.9 6.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) Pam16 PF03656.8 gi|529077675|ref|YP_008376678.1| - 1.5 8.6 5.2 7.6 6.3 3.6 2.0 1 1 0 1 1 1 0 Pam16 NAD_synthase PF02540.12 gi|529077676|ref|YP_008376679.1| - 3.5e-81 271.6 0.0 4.5e-81 271.3 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|529077676|ref|YP_008376679.1| - 2.9e-07 29.3 0.0 4.4e-05 22.1 0.0 2.1 2 0 0 2 2 2 2 tRNA methyl transferase Asn_synthase PF00733.16 gi|529077676|ref|YP_008376679.1| - 4.7e-05 23.0 0.0 7e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase HTH_28 PF13518.1 gi|529077676|ref|YP_008376679.1| - 0.0012 18.8 0.0 0.0085 16.0 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|529077676|ref|YP_008376679.1| - 0.0047 16.5 0.9 0.086 12.5 0.0 2.8 3 0 0 3 3 3 1 Homeodomain-like domain DUF3590 PF12148.3 gi|529077676|ref|YP_008376679.1| - 0.012 15.2 0.2 0.069 12.7 0.0 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF3590) QueC PF06508.8 gi|529077676|ref|YP_008376679.1| - 0.012 14.8 0.0 0.055 12.7 0.0 1.9 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC DUF3203 PF11462.3 gi|529077676|ref|YP_008376679.1| - 0.034 14.0 0.0 0.083 12.8 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3203) HTH_29 PF13551.1 gi|529077676|ref|YP_008376679.1| - 0.053 13.6 0.0 0.12 12.4 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix Cyclase PF04199.8 gi|529077678|ref|YP_008376681.1| - 6.2e-22 78.0 0.7 9e-22 77.5 0.5 1.3 1 0 0 1 1 1 1 Putative cyclase DUF998 PF06197.8 gi|529077679|ref|YP_008376682.1| - 7.1e-18 64.5 32.1 8.8e-18 64.2 22.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF998) HTH_AsnC-type PF13404.1 gi|529077680|ref|YP_008376683.1| - 1.1e-11 44.0 1.5 2.1e-11 43.1 1.1 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.16 gi|529077680|ref|YP_008376683.1| - 3.7e-10 39.3 0.1 6.8e-10 38.5 0.1 1.4 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|529077680|ref|YP_008376683.1| - 4.8e-09 35.4 0.0 7.4e-09 34.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Tnp_ISL3 PF13542.1 gi|529077680|ref|YP_008376683.1| - 0.00011 21.2 0.4 0.045 12.9 0.0 2.5 2 0 0 2 2 2 2 Helix-turn-helix domain of transposase family ISL3 HTH_DeoR PF08220.7 gi|529077680|ref|YP_008376683.1| - 0.00016 21.1 0.1 0.00043 19.7 0.0 1.7 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_20 PF12840.2 gi|529077680|ref|YP_008376683.1| - 0.0037 17.0 0.3 0.0078 15.9 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|529077680|ref|YP_008376683.1| - 0.007 16.0 0.0 0.012 15.3 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|529077680|ref|YP_008376683.1| - 0.0072 15.9 0.0 0.013 15.1 0.0 1.5 1 0 0 1 1 1 1 HTH domain DDRGK PF09756.4 gi|529077680|ref|YP_008376683.1| - 0.014 14.7 0.0 0.02 14.3 0.0 1.2 1 0 0 1 1 1 0 DDRGK domain HTH_Crp_2 PF13545.1 gi|529077680|ref|YP_008376683.1| - 0.028 14.2 0.0 0.053 13.3 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain RuvB_C PF05491.8 gi|529077680|ref|YP_008376683.1| - 0.041 13.4 0.1 0.07 12.7 0.1 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB C-terminus DUF2042 PF09743.4 gi|529077680|ref|YP_008376683.1| - 0.15 11.3 0.0 0.22 10.8 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2042) P-II PF00543.17 gi|529077681|ref|YP_008376684.1| - 2.9e-33 114.3 0.1 3.3e-33 114.2 0.1 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II FAD_binding_4 PF01565.18 gi|529077681|ref|YP_008376684.1| - 0.0089 15.4 0.1 0.012 15.1 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain HisG_C PF08029.6 gi|529077681|ref|YP_008376684.1| - 0.034 14.0 0.0 8.8 6.3 0.0 2.2 2 0 0 2 2 2 0 HisG, C-terminal domain ALAD PF00490.16 gi|529077682|ref|YP_008376685.1| - 7.4e-141 468.7 0.0 8.3e-141 468.5 0.0 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase Glyco_transf_36 PF06165.6 gi|529077683|ref|YP_008376686.1| - 6.6e-33 112.8 0.0 1.8e-32 111.4 0.0 1.8 2 0 0 2 2 2 1 Glycosyltransferase family 36 GT36_AF PF06205.6 gi|529077683|ref|YP_008376686.1| - 1.1e-24 85.9 0.0 2.9e-24 84.6 0.0 1.7 1 0 0 1 1 1 1 Glycosyltransferase 36 associated family CBM_X PF06204.6 gi|529077683|ref|YP_008376686.1| - 5.4e-23 80.2 0.5 1.3e-22 79.0 0.4 1.7 1 0 0 1 1 1 1 Putative carbohydrate binding domain Glyco_transf_36 PF06165.6 gi|529077684|ref|YP_008376687.1| - 1.6e-33 114.8 0.0 3.5e-33 113.7 0.0 1.6 1 0 0 1 1 1 1 Glycosyltransferase family 36 CBM_X PF06204.6 gi|529077684|ref|YP_008376687.1| - 2.7e-22 78.0 0.6 6.3e-22 76.8 0.4 1.7 1 0 0 1 1 1 1 Putative carbohydrate binding domain GT36_AF PF06205.6 gi|529077684|ref|YP_008376687.1| - 4.7e-15 55.1 0.4 1.4e-14 53.6 0.0 1.9 2 0 0 2 2 2 1 Glycosyltransferase 36 associated family DUF608 PF04685.8 gi|529077684|ref|YP_008376687.1| - 0.024 13.3 0.1 0.045 12.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF608 DUF3773 PF12608.3 gi|529077684|ref|YP_008376687.1| - 0.11 12.5 0.2 45 4.1 0.0 3.8 4 1 0 4 4 4 0 Protein of unknown function (DUF3773) PIN PF01850.16 gi|529077685|ref|YP_008376688.1| - 1.8e-07 31.5 0.1 2.4e-07 31.1 0.1 1.2 1 0 0 1 1 1 1 PIN domain DUF217 PF02697.9 gi|529077686|ref|YP_008376689.1| - 3.3e-09 36.8 1.0 3.8e-09 36.6 0.7 1.2 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 DUF4349 PF14257.1 gi|529077686|ref|YP_008376689.1| - 0.0041 16.3 1.5 0.0047 16.1 1.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4349) RHH_1 PF01402.16 gi|529077686|ref|YP_008376689.1| - 0.038 13.8 4.5 0.098 12.5 0.3 2.7 2 1 1 3 3 3 0 Ribbon-helix-helix protein, copG family DUF4149 PF13664.1 gi|529077687|ref|YP_008376690.1| - 0.024 14.7 5.0 0.041 13.9 0.3 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF4149) DUF1772 PF08592.6 gi|529077687|ref|YP_008376690.1| - 0.039 13.6 0.3 0.039 13.6 0.2 3.1 1 1 2 3 3 3 0 Domain of unknown function (DUF1772) Glyco_hydro_3 PF00933.16 gi|529077688|ref|YP_008376691.1| - 1.1e-81 274.1 0.0 1.4e-81 273.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.17 gi|529077688|ref|YP_008376691.1| - 1.7e-54 184.7 0.0 3.1e-54 183.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.1 gi|529077688|ref|YP_008376691.1| - 7.1e-14 51.5 0.1 1.4e-13 50.5 0.1 1.5 1 0 0 1 1 1 1 Fibronectin type III-like domain Aldedh PF00171.17 gi|529077690|ref|YP_008376693.1| - 1.6e-23 82.8 8.2 6.2e-19 67.6 3.7 2.4 2 1 0 2 2 2 2 Aldehyde dehydrogenase family AA_kinase PF00696.23 gi|529077691|ref|YP_008376694.1| - 5.6e-41 140.6 3.2 6.5e-41 140.4 2.2 1.0 1 0 0 1 1 1 1 Amino acid kinase family Snf7 PF03357.16 gi|529077691|ref|YP_008376694.1| - 0.077 12.3 0.1 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 Snf7 P5CR_dimer PF14748.1 gi|529077693|ref|YP_008376696.1| - 1.9e-32 111.4 2.0 1.9e-32 111.4 1.4 1.9 2 0 0 2 2 2 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.12 gi|529077693|ref|YP_008376696.1| - 1.1e-15 57.8 0.4 3.1e-15 56.3 0.3 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|529077693|ref|YP_008376696.1| - 7.2e-07 29.1 0.5 7.2e-07 29.1 0.3 1.9 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.13 gi|529077693|ref|YP_008376696.1| - 2.6e-05 23.9 0.5 6.6e-05 22.6 0.3 1.8 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|529077693|ref|YP_008376696.1| - 3.4e-05 23.6 0.6 0.0048 16.6 0.4 2.4 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PDH PF02153.12 gi|529077693|ref|YP_008376696.1| - 9.2e-05 21.4 0.2 0.00064 18.6 0.1 1.9 2 0 0 2 2 2 1 Prephenate dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|529077693|ref|YP_008376696.1| - 0.00032 20.1 0.3 0.00072 18.9 0.2 1.8 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TrkA_N PF02254.13 gi|529077693|ref|YP_008376696.1| - 0.00092 19.2 0.5 0.0021 18.0 0.1 1.9 2 1 0 2 2 2 1 TrkA-N domain Rossmann-like PF10727.4 gi|529077693|ref|YP_008376696.1| - 0.0014 18.3 2.8 0.0014 18.3 1.9 2.8 1 1 2 3 3 3 1 Rossmann-like domain NAD_binding_10 PF13460.1 gi|529077693|ref|YP_008376696.1| - 0.0023 17.9 2.7 0.0049 16.9 1.8 1.6 1 0 0 1 1 1 1 NADH(P)-binding XdhC_C PF13478.1 gi|529077693|ref|YP_008376696.1| - 0.0069 16.7 0.1 0.018 15.3 0.1 1.8 1 1 0 1 1 1 1 XdhC Rossmann domain CoA_binding_2 PF13380.1 gi|529077693|ref|YP_008376696.1| - 0.024 14.7 0.1 0.067 13.3 0.0 1.7 1 0 0 1 1 1 0 CoA binding domain ApbA PF02558.11 gi|529077693|ref|YP_008376696.1| - 0.057 12.8 0.1 0.12 11.8 0.1 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Tnp_DNA_bind PF14706.1 gi|529077694|ref|YP_008376697.1| - 4.4e-26 90.3 0.0 7.9e-26 89.5 0.0 1.4 1 0 0 1 1 1 1 Transposase DNA-binding DDE_Tnp_1 PF01609.16 gi|529077694|ref|YP_008376697.1| - 1.4e-05 24.7 0.1 2.5e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain Dimer_Tnp_Tn5 PF02281.11 gi|529077694|ref|YP_008376697.1| - 0.035 14.2 0.0 0.084 13.0 0.0 1.7 1 0 0 1 1 1 0 Transposase Tn5 dimerisation domain OrfB_Zn_ribbon PF07282.6 gi|529077695|ref|YP_008376698.1| - 5.2e-23 80.4 0.5 8.6e-23 79.7 0.4 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|529077695|ref|YP_008376698.1| - 1.7e-16 60.3 0.0 2.4e-16 59.8 0.0 1.2 1 0 0 1 1 1 1 Probable transposase TF_Zn_Ribbon PF08271.7 gi|529077695|ref|YP_008376698.1| - 0.01 15.1 0.5 0.021 14.1 0.3 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding DUF4503 PF14951.1 gi|529077695|ref|YP_008376698.1| - 0.044 11.9 0.2 0.066 11.3 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4503) Zn_Tnp_IS1595 PF12760.2 gi|529077695|ref|YP_008376698.1| - 0.044 13.5 1.8 0.086 12.6 1.3 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DZR PF12773.2 gi|529077695|ref|YP_008376698.1| - 0.074 12.8 1.1 0.15 11.9 0.8 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-UDP PF14569.1 gi|529077695|ref|YP_008376698.1| - 0.078 12.7 0.3 0.21 11.3 0.2 1.6 1 0 0 1 1 1 0 Zinc-binding RING-finger zf-ribbon_3 PF13248.1 gi|529077695|ref|YP_008376698.1| - 0.31 10.3 2.0 13 5.1 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|529077695|ref|YP_008376698.1| - 0.46 10.0 2.9 7.1 6.2 0.4 2.4 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|529077695|ref|YP_008376698.1| - 2 8.1 4.1 20 4.9 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Cytochrom_B_N PF00033.14 gi|529077697|ref|YP_008376700.1| - 0.00035 19.9 6.4 0.0079 15.5 0.3 2.1 1 1 1 2 2 2 2 Cytochrome b(N-terminal)/b6/petB Ni_hydr_CYTB PF01292.15 gi|529077697|ref|YP_008376700.1| - 0.012 14.9 5.2 0.042 13.2 0.3 2.1 1 1 1 2 2 2 0 Prokaryotic cytochrome b561 PepSY_TM_3 PF13706.1 gi|529077697|ref|YP_008376700.1| - 0.39 10.1 14.1 0.36 10.2 0.6 3.2 3 0 0 3 3 3 0 PepSY-associated TM helix Ferric_reduct PF01794.14 gi|529077697|ref|YP_008376700.1| - 1 9.4 7.7 50 3.9 5.4 2.2 1 1 0 1 1 1 0 Ferric reductase like transmembrane component DUF4405 PF14358.1 gi|529077697|ref|YP_008376700.1| - 6.7 6.9 10.4 13 5.9 2.9 2.8 2 2 0 2 2 2 0 Domain of unknown function (DUF4405) TetR_C_6 PF13977.1 gi|529077698|ref|YP_008376701.1| - 1.3e-10 41.3 1.0 2.2e-10 40.5 0.7 1.4 1 0 0 1 1 1 1 Bacterial transcriptional repressor TetR_N PF00440.18 gi|529077698|ref|YP_008376701.1| - 1.9e-10 40.2 0.0 3.8e-10 39.2 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_5 PF08360.6 gi|529077698|ref|YP_008376701.1| - 0.01 15.8 0.0 0.017 15.1 0.0 1.3 1 0 0 1 1 1 0 QacR-like protein, C-terminal region TetR_C_9 PF14514.1 gi|529077698|ref|YP_008376701.1| - 0.036 13.8 0.1 0.92 9.3 0.0 2.4 2 1 0 2 2 2 0 Transcriptional regulator, TetR, C-terminal ABC_membrane PF00664.18 gi|529077699|ref|YP_008376702.1| - 2.9e-37 128.5 0.2 3.7e-37 128.2 0.1 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.22 gi|529077699|ref|YP_008376702.1| - 1.3e-36 125.9 0.0 2.2e-36 125.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|529077699|ref|YP_008376702.1| - 3.2e-05 24.0 0.0 0.018 15.0 0.0 2.3 1 1 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|529077699|ref|YP_008376702.1| - 0.00024 20.2 0.0 0.00049 19.2 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_30 PF13604.1 gi|529077699|ref|YP_008376702.1| - 0.00068 19.2 1.1 0.012 15.1 0.0 2.6 1 1 1 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|529077699|ref|YP_008376702.1| - 0.00073 19.6 0.2 0.0049 16.9 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|529077699|ref|YP_008376702.1| - 0.00091 20.0 0.2 0.0023 18.7 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|529077699|ref|YP_008376702.1| - 0.0013 18.7 0.1 0.0026 17.7 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|529077699|ref|YP_008376702.1| - 0.0056 15.9 0.0 0.1 11.8 0.0 1.9 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|529077699|ref|YP_008376702.1| - 0.0072 16.5 0.0 0.057 13.6 0.0 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|529077699|ref|YP_008376702.1| - 0.013 15.2 0.1 0.05 13.3 0.0 2.0 1 0 0 1 1 1 0 Part of AAA domain AAA_18 PF13238.1 gi|529077699|ref|YP_008376702.1| - 0.02 15.2 0.3 0.045 14.0 0.0 1.8 2 0 0 2 2 1 0 AAA domain AAA_33 PF13671.1 gi|529077699|ref|YP_008376702.1| - 0.02 14.7 0.0 0.2 11.5 0.0 2.5 3 0 0 3 3 3 0 AAA domain DUF258 PF03193.11 gi|529077699|ref|YP_008376702.1| - 0.02 14.0 0.0 0.036 13.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|529077699|ref|YP_008376702.1| - 0.03 14.6 0.0 0.07 13.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|529077699|ref|YP_008376702.1| - 0.032 13.8 0.0 0.067 12.8 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_14 PF13173.1 gi|529077699|ref|YP_008376702.1| - 0.032 14.1 0.0 0.11 12.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|529077699|ref|YP_008376702.1| - 0.039 13.3 0.5 0.15 11.4 0.1 2.2 2 1 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|529077699|ref|YP_008376702.1| - 0.04 13.4 0.0 0.13 11.8 0.0 1.8 1 0 0 1 1 1 0 P-loop containing region of AAA domain cobW PF02492.14 gi|529077699|ref|YP_008376702.1| - 0.055 12.9 0.0 0.098 12.0 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|529077699|ref|YP_008376702.1| - 0.064 12.9 0.0 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|529077699|ref|YP_008376702.1| - 0.077 12.4 0.0 0.24 10.8 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain ABC_ATPase PF09818.4 gi|529077699|ref|YP_008376702.1| - 0.12 10.9 2.3 0.1 11.1 0.2 1.7 2 0 0 2 2 2 0 Predicted ATPase of the ABC class MMR_HSR1 PF01926.18 gi|529077699|ref|YP_008376702.1| - 0.14 12.1 0.0 1.2 9.0 0.0 2.3 2 0 0 2 2 2 0 50S ribosome-binding GTPase Exo_endo_phos PF03372.18 gi|529077702|ref|YP_008376705.1| - 1.4e-15 57.9 6.9 4.3e-15 56.3 4.8 1.7 1 1 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.1 gi|529077702|ref|YP_008376705.1| - 0.00032 20.2 0.0 0.0011 18.5 0.0 1.9 1 1 0 1 1 1 1 Endonuclease-reverse transcriptase Lactamase_B_2 PF12706.2 gi|529077703|ref|YP_008376706.1| - 5.1e-10 39.2 1.0 9.1e-10 38.3 0.3 1.7 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|529077703|ref|YP_008376706.1| - 6.8e-09 35.6 9.3 2.8e-08 33.6 6.4 2.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily AAA_10 PF12846.2 gi|529077704|ref|YP_008376707.1| - 3.5e-20 72.6 0.0 3.3e-19 69.4 0.0 2.0 1 1 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|529077704|ref|YP_008376707.1| - 5.4e-08 32.9 0.0 1e-07 32.0 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF87 DUF853 PF05872.7 gi|529077704|ref|YP_008376707.1| - 4.2e-06 25.3 0.1 0.0047 15.3 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.13 gi|529077704|ref|YP_008376707.1| - 8.5e-05 22.1 0.0 0.051 13.0 0.0 2.5 2 0 0 2 2 2 2 FtsK/SpoIIIE family AAA_19 PF13245.1 gi|529077704|ref|YP_008376707.1| - 0.00049 19.8 0.0 0.0013 18.4 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_16 PF13191.1 gi|529077704|ref|YP_008376707.1| - 0.0009 19.2 0.0 0.0057 16.6 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain T2SE PF00437.15 gi|529077704|ref|YP_008376707.1| - 0.0092 14.9 0.0 0.016 14.1 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_22 PF13401.1 gi|529077704|ref|YP_008376707.1| - 0.0094 16.0 0.0 0.033 14.3 0.0 1.9 2 0 0 2 2 2 1 AAA domain TrwB_AAD_bind PF10412.4 gi|529077704|ref|YP_008376707.1| - 0.017 13.7 0.0 0.026 13.1 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA PF00004.24 gi|529077704|ref|YP_008376707.1| - 0.021 15.0 0.2 4.2 7.5 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.7 gi|529077704|ref|YP_008376707.1| - 0.032 13.3 0.0 0.083 11.9 0.0 1.6 2 0 0 2 2 2 0 Zeta toxin Zot PF05707.7 gi|529077704|ref|YP_008376707.1| - 0.056 12.9 0.0 2.5 7.5 0.0 2.2 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) HAS-barrel PF09378.5 gi|529077704|ref|YP_008376707.1| - 0.078 12.8 0.0 0.28 11.0 0.0 1.9 2 0 0 2 2 2 0 HAS barrel domain AAA_18 PF13238.1 gi|529077704|ref|YP_008376707.1| - 0.13 12.6 0.0 3.2 8.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain Ribosomal_L30_N PF08079.7 gi|529077704|ref|YP_008376707.1| - 0.16 12.0 0.3 0.34 10.9 0.2 1.5 1 0 0 1 1 1 0 Ribosomal L30 N-terminal domain DUF4398 PF14346.1 gi|529077705|ref|YP_008376708.1| - 0.023 14.7 3.1 0.023 14.7 2.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4398) ATP-synt_DE PF00401.15 gi|529077705|ref|YP_008376708.1| - 1 9.3 8.1 10 6.0 0.2 3.5 3 0 0 3 3 3 0 ATP synthase, Delta/Epsilon chain, long alpha-helix domain DDE_Tnp_1 PF01609.16 gi|529077706|ref|YP_008376709.1| - 1e-15 57.8 0.1 1.5e-15 57.3 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain FG-GAP_2 PF14312.1 gi|529077707|ref|YP_008376710.1| - 3.5e-67 222.1 20.3 2.8e-14 52.8 1.1 7.3 7 0 0 7 7 7 6 FG-GAP repeat SMI1_KNR4 PF09346.5 gi|529077707|ref|YP_008376710.1| - 1.9e-05 24.6 1.5 0.97 9.4 0.0 3.6 2 1 0 3 3 3 2 SMI1 / KNR4 family (SUKH-1) AnfO_nitrog PF09582.5 gi|529077707|ref|YP_008376710.1| - 4e-05 22.8 0.0 3.8 6.5 0.0 4.8 6 0 0 6 6 6 2 Iron only nitrogenase protein AnfO (AnfO_nitrog) ydhR PF08803.6 gi|529077707|ref|YP_008376710.1| - 0.0085 16.1 0.9 8 6.6 0.0 3.8 5 0 0 5 5 5 1 Putative mono-oxygenase ydhR YCII PF03795.9 gi|529077707|ref|YP_008376710.1| - 0.017 15.3 0.6 8 6.7 0.0 3.9 3 1 0 3 3 3 0 YCII-related domain Toxin_53 PF15532.1 gi|529077707|ref|YP_008376710.1| - 0.083 13.1 0.1 9.3 6.5 0.0 2.9 2 0 0 2 2 2 0 Putative toxin 53 FG-GAP PF01839.18 gi|529077707|ref|YP_008376710.1| - 1.2 8.9 12.1 13 5.6 0.1 4.6 4 1 0 4 4 4 0 FG-GAP repeat Usp PF00582.21 gi|529077708|ref|YP_008376711.1| - 4.2e-35 120.9 0.1 4.7e-35 120.8 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family PGM_PMM_I PF02878.11 gi|529077709|ref|YP_008376712.1| - 3.3e-31 107.5 0.0 7.8e-31 106.3 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|529077709|ref|YP_008376712.1| - 1.5e-23 83.1 0.4 7e-23 80.9 0.1 2.3 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|529077709|ref|YP_008376712.1| - 2.3e-12 46.7 0.3 8.5e-12 44.9 0.0 2.1 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.11 gi|529077709|ref|YP_008376712.1| - 0.00013 22.0 0.0 0.00028 20.8 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PNP_UDP_1 PF01048.15 gi|529077710|ref|YP_008376713.1| - 3.1e-43 147.4 0.5 3.8e-43 147.1 0.4 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Bmp PF02608.9 gi|529077712|ref|YP_008376715.1| - 3.8e-60 203.1 5.3 5.8e-60 202.6 3.7 1.2 1 1 0 1 1 1 1 Basic membrane protein Peripla_BP_4 PF13407.1 gi|529077712|ref|YP_008376715.1| - 0.00017 21.0 4.7 0.00026 20.4 3.3 1.3 1 0 0 1 1 1 1 Periplasmic binding protein domain TAT_signal PF10518.4 gi|529077712|ref|YP_008376715.1| - 0.021 14.8 1.4 0.039 13.9 0.0 2.2 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence ABC_tran PF00005.22 gi|529077713|ref|YP_008376716.1| - 1.6e-47 161.2 0.0 5.2e-30 104.5 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|529077713|ref|YP_008376716.1| - 2.1e-11 44.3 0.0 5.5e-05 23.2 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|529077713|ref|YP_008376716.1| - 2.4e-06 26.9 0.1 0.00068 19.1 0.0 2.9 3 0 0 3 3 2 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|529077713|ref|YP_008376716.1| - 0.00028 20.1 0.1 0.0024 17.0 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|529077713|ref|YP_008376716.1| - 0.00033 19.8 0.1 0.63 9.0 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_14 PF13173.1 gi|529077713|ref|YP_008376716.1| - 0.00048 20.0 0.3 0.075 12.9 0.0 2.7 3 0 0 3 3 3 1 AAA domain AAA_25 PF13481.1 gi|529077713|ref|YP_008376716.1| - 0.003 16.9 0.1 0.008 15.5 0.0 1.7 1 1 0 1 1 1 1 AAA domain Bac_DnaA PF00308.13 gi|529077713|ref|YP_008376716.1| - 0.0046 16.6 1.6 0.011 15.4 0.0 2.2 3 0 0 3 3 3 1 Bacterial dnaA protein SMC_N PF02463.14 gi|529077713|ref|YP_008376716.1| - 0.0048 16.1 0.6 0.22 10.6 0.1 3.0 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.18 gi|529077713|ref|YP_008376716.1| - 0.021 14.7 0.0 0.076 12.9 0.0 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_30 PF13604.1 gi|529077713|ref|YP_008376716.1| - 0.035 13.6 0.1 0.27 10.7 0.1 2.2 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|529077713|ref|YP_008376716.1| - 0.038 14.3 0.0 0.06 13.6 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|529077713|ref|YP_008376716.1| - 0.081 12.3 0.1 0.67 9.3 0.0 2.3 3 0 0 3 3 3 0 AAA-like domain IstB_IS21 PF01695.12 gi|529077713|ref|YP_008376716.1| - 0.11 11.8 0.2 0.57 9.5 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_13 PF13166.1 gi|529077713|ref|YP_008376716.1| - 0.16 10.4 0.0 0.21 10.0 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|529077713|ref|YP_008376716.1| - 0.18 11.9 1.5 1.3 9.1 0.2 2.6 2 1 0 2 2 2 0 AAA domain BPD_transp_2 PF02653.11 gi|529077714|ref|YP_008376717.1| - 1.5e-42 145.4 34.7 1.5e-42 145.4 24.0 1.8 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|529077715|ref|YP_008376718.1| - 3e-31 108.3 37.2 3e-31 108.3 25.8 1.8 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component dCMP_cyt_deam_1 PF00383.17 gi|529077716|ref|YP_008376719.1| - 1e-15 57.2 0.0 1.2e-15 56.9 0.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.6 gi|529077716|ref|YP_008376719.1| - 2e-11 43.9 0.1 2.7e-11 43.5 0.1 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.1 gi|529077716|ref|YP_008376719.1| - 0.088 12.4 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 MafB19-like deaminase YwqJ-deaminase PF14431.1 gi|529077716|ref|YP_008376719.1| - 0.088 12.6 0.1 1.5 8.7 0.1 2.1 1 1 1 2 2 2 0 YwqJ-like deaminase MCPsignal PF00015.16 gi|529077717|ref|YP_008376720.1| - 1.6e-46 158.5 53.5 1.5e-42 145.5 25.5 2.4 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain BLOC1_2 PF10046.4 gi|529077717|ref|YP_008376720.1| - 2.7e-06 27.4 24.4 0.00016 21.7 1.1 4.4 2 1 2 4 4 4 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF948 PF06103.6 gi|529077717|ref|YP_008376720.1| - 0.00017 21.3 24.2 0.013 15.3 1.5 4.7 4 1 2 6 6 5 3 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.7 gi|529077717|ref|YP_008376720.1| - 0.00099 18.8 32.5 0.35 10.6 2.9 4.4 2 2 2 4 4 4 3 Laminin Domain II PilJ PF13675.1 gi|529077717|ref|YP_008376720.1| - 0.002 18.4 25.6 1.9 8.8 2.6 5.2 1 1 4 5 5 5 3 Type IV pili methyl-accepting chemotaxis transducer N-term DUF869 PF05911.6 gi|529077717|ref|YP_008376720.1| - 0.0026 16.0 27.9 0.0073 14.6 19.3 1.7 1 1 0 1 1 1 1 Plant protein of unknown function (DUF869) APG17 PF04108.7 gi|529077717|ref|YP_008376720.1| - 0.0098 14.7 25.7 0.016 14.0 1.4 3.5 1 1 2 3 3 3 2 Autophagy protein Apg17 EzrA PF06160.7 gi|529077717|ref|YP_008376720.1| - 0.028 12.6 27.1 0.037 12.2 6.1 2.9 2 2 0 2 2 2 0 Septation ring formation regulator, EzrA NPV_P10 PF05531.7 gi|529077717|ref|YP_008376720.1| - 0.032 14.4 26.7 0.16 12.2 1.2 5.5 3 2 2 5 5 5 0 Nucleopolyhedrovirus P10 protein AAA_13 PF13166.1 gi|529077717|ref|YP_008376720.1| - 0.035 12.6 27.7 0.052 12.0 13.7 2.4 1 1 1 2 2 2 0 AAA domain DUF1664 PF07889.7 gi|529077717|ref|YP_008376720.1| - 0.047 13.4 23.3 0.28 11.0 1.4 4.3 1 1 4 5 5 5 0 Protein of unknown function (DUF1664) Spc7 PF08317.6 gi|529077717|ref|YP_008376720.1| - 0.057 12.0 27.6 0.061 11.9 6.1 3.0 1 1 3 4 4 4 0 Spc7 kinetochore protein Herpes_U30 PF04523.8 gi|529077717|ref|YP_008376720.1| - 0.16 9.3 16.0 0.028 11.9 2.7 2.5 1 1 2 3 3 3 0 Herpes virus tegument protein U30 AAA_27 PF13514.1 gi|529077717|ref|YP_008376720.1| - 0.22 9.1 51.8 0.4 8.3 35.9 1.3 1 1 0 1 1 1 0 AAA domain IncA PF04156.9 gi|529077717|ref|YP_008376720.1| - 0.27 10.7 33.0 1.3 8.5 2.6 4.0 1 1 3 4 4 4 0 IncA protein DUF3450 PF11932.3 gi|529077717|ref|YP_008376720.1| - 0.46 9.6 32.5 0.1 11.8 5.6 3.9 1 1 3 4 4 4 0 Protein of unknown function (DUF3450) Reo_sigmaC PF04582.7 gi|529077717|ref|YP_008376720.1| - 0.6 9.2 20.8 0.09 11.9 2.2 3.2 1 1 3 4 4 4 0 Reovirus sigma C capsid protein Baculo_PEP_C PF04513.7 gi|529077717|ref|YP_008376720.1| - 0.96 9.2 23.5 0.47 10.2 2.9 4.0 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Ferritin PF00210.19 gi|529077717|ref|YP_008376720.1| - 1 9.1 29.6 0.057 13.1 6.4 4.2 2 2 1 3 3 3 0 Ferritin-like domain IFT46_B_C PF12317.3 gi|529077717|ref|YP_008376720.1| - 1.3 8.3 9.9 11 5.2 0.1 3.3 2 1 0 3 3 3 0 Intraflagellar transport complex B protein 46 C terminal APG6 PF04111.7 gi|529077717|ref|YP_008376720.1| - 2.3 7.1 30.7 0.12 11.4 5.8 2.8 2 1 1 3 3 3 0 Autophagy protein Apg6 TMPIT PF07851.8 gi|529077717|ref|YP_008376720.1| - 3 6.8 13.0 2.6 7.0 0.7 3.0 1 1 2 4 4 4 0 TMPIT-like protein CAP_N PF01213.14 gi|529077717|ref|YP_008376720.1| - 4.6 6.4 18.2 1.3 8.2 1.3 2.9 2 1 1 3 3 3 0 Adenylate cyclase associated (CAP) N terminal ERM PF00769.14 gi|529077717|ref|YP_008376720.1| - 8.1 5.9 41.4 0.89 9.0 9.4 3.4 1 1 1 2 2 2 0 Ezrin/radixin/moesin family DUF1427 PF07235.6 gi|529077718|ref|YP_008376721.1| - 2.3e-05 24.3 3.1 2.6e-05 24.2 2.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1427) TauE PF01925.14 gi|529077718|ref|YP_008376721.1| - 0.0026 17.2 3.3 0.0027 17.2 2.3 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE SpoVAB PF13782.1 gi|529077718|ref|YP_008376721.1| - 0.077 12.9 0.6 0.09 12.7 0.4 1.1 1 0 0 1 1 1 0 Stage V sporulation protein AB DUF2759 PF10958.3 gi|529077718|ref|YP_008376721.1| - 0.31 10.6 3.5 0.24 10.9 0.6 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2759) DUF2273 PF10031.4 gi|529077718|ref|YP_008376721.1| - 0.34 10.5 4.7 1.4 8.5 0.2 2.1 2 0 0 2 2 2 0 Small integral membrane protein (DUF2273) ATPase_gene1 PF09527.5 gi|529077718|ref|YP_008376721.1| - 0.8 9.5 8.1 5 7.0 1.6 2.2 2 0 0 2 2 2 0 Putative F0F1-ATPase subunit (ATPase_gene1) PNP_UDP_1 PF01048.15 gi|529077719|ref|YP_008376722.1| - 4e-46 156.9 3.2 4.7e-46 156.6 2.2 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily OrfB_IS605 PF01385.14 gi|529077720|ref|YP_008376723.1| - 1.2e-61 208.0 0.1 1.5e-61 207.6 0.0 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|529077720|ref|YP_008376723.1| - 1.7e-18 65.9 1.3 3.2e-18 65.1 0.3 2.0 2 0 0 2 2 2 1 Putative transposase DNA-binding domain Prim_Zn_Ribbon PF08273.7 gi|529077720|ref|YP_008376723.1| - 0.042 13.9 3.2 0.15 12.1 2.2 2.0 1 0 0 1 1 1 0 Zinc-binding domain of primase-helicase PNP_UDP_1 PF01048.15 gi|529077721|ref|YP_008376724.1| - 8.2e-41 139.4 0.2 9.8e-41 139.2 0.1 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily IF-2B PF01008.12 gi|529077722|ref|YP_008376725.1| - 1.1e-69 234.5 0.5 1.3e-69 234.3 0.3 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family SIS_2 PF13580.1 gi|529077722|ref|YP_008376725.1| - 0.0024 17.5 1.3 0.006 16.3 0.0 2.2 3 0 0 3 3 3 1 SIS domain PEP-utilizers PF00391.18 gi|529077722|ref|YP_008376725.1| - 0.0043 16.5 0.3 0.59 9.7 0.2 3.3 3 1 0 3 3 3 1 PEP-utilising enzyme, mobile domain TIM PF00121.13 gi|529077722|ref|YP_008376725.1| - 0.051 12.6 0.0 0.12 11.3 0.0 1.7 1 0 0 1 1 1 0 Triosephosphate isomerase HrcA PF01628.16 gi|529077722|ref|YP_008376725.1| - 0.061 12.9 0.2 0.11 12.0 0.1 1.6 1 1 0 1 1 1 0 HrcA protein C terminal domain DeoC PF01791.4 gi|529077723|ref|YP_008376726.1| - 6.4e-40 136.9 1.1 7e-40 136.7 0.7 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase KaiC PF06745.8 gi|529077724|ref|YP_008376727.1| - 2.4e-57 193.6 0.0 3e-57 193.3 0.0 1.1 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|529077724|ref|YP_008376727.1| - 7.2e-11 41.8 0.0 1.4e-10 40.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.10 gi|529077724|ref|YP_008376727.1| - 2.4e-07 29.9 0.0 1.4e-05 24.1 0.0 2.2 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain GvpD PF07088.6 gi|529077724|ref|YP_008376727.1| - 4.9e-07 28.4 1.3 1e-06 27.4 0.1 2.0 2 1 0 2 2 2 1 GvpD gas vesicle protein AAA_24 PF13479.1 gi|529077724|ref|YP_008376727.1| - 0.00013 21.6 0.0 0.00024 20.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|529077724|ref|YP_008376727.1| - 0.00027 20.4 0.0 0.00045 19.6 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_19 PF13245.1 gi|529077724|ref|YP_008376727.1| - 0.00074 19.2 0.0 0.002 17.8 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_14 PF13173.1 gi|529077724|ref|YP_008376727.1| - 0.0014 18.4 0.0 0.0034 17.2 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|529077724|ref|YP_008376727.1| - 0.0019 17.7 0.0 0.0024 17.3 0.0 1.1 1 0 0 1 1 1 1 AAA-like domain AAA_22 PF13401.1 gi|529077724|ref|YP_008376727.1| - 0.0048 17.0 0.0 0.011 15.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|529077724|ref|YP_008376727.1| - 0.0058 15.5 0.0 0.0081 15.0 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein RecA PF00154.16 gi|529077724|ref|YP_008376727.1| - 0.0075 15.3 0.0 0.011 14.8 0.0 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_18 PF13238.1 gi|529077724|ref|YP_008376727.1| - 0.0086 16.3 0.0 0.017 15.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF2075 PF09848.4 gi|529077724|ref|YP_008376727.1| - 0.0096 14.9 0.0 0.013 14.4 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_16 PF13191.1 gi|529077724|ref|YP_008376727.1| - 0.022 14.7 0.1 0.14 12.0 0.1 2.3 1 1 0 1 1 1 0 AAA ATPase domain MEDS PF14417.1 gi|529077724|ref|YP_008376727.1| - 0.041 12.9 0.0 0.065 12.2 0.0 1.2 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain AAA_30 PF13604.1 gi|529077724|ref|YP_008376727.1| - 0.052 13.1 0.0 0.09 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|529077724|ref|YP_008376727.1| - 0.055 13.1 0.0 0.12 12.0 0.0 1.5 1 1 0 1 1 1 0 Archaeal ATPase AAA_33 PF13671.1 gi|529077724|ref|YP_008376727.1| - 0.058 13.2 0.2 0.13 12.1 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|529077724|ref|YP_008376727.1| - 0.064 13.2 0.0 0.12 12.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain PPV_E1_C PF00519.12 gi|529077724|ref|YP_008376727.1| - 0.099 11.2 0.0 0.15 10.6 0.0 1.2 1 0 0 1 1 1 0 Papillomavirus helicase NAD_kinase PF01513.16 gi|529077725|ref|YP_008376728.1| - 3.9e-37 127.5 0.3 4.9e-37 127.2 0.2 1.1 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|529077725|ref|YP_008376728.1| - 0.015 14.7 0.1 0.028 13.8 0.1 1.5 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain ABC2_membrane_2 PF12679.2 gi|529077726|ref|YP_008376729.1| - 0.16 10.7 2.7 0.16 10.7 1.9 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein EmrE PF13536.1 gi|529077727|ref|YP_008376730.1| - 4.1 7.6 6.8 4.6 7.4 4.7 1.0 1 0 0 1 1 1 0 Multidrug resistance efflux transporter HypA PF01155.14 gi|529077728|ref|YP_008376731.1| - 0.041 13.5 0.5 0.045 13.4 0.4 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF4501 PF14946.1 gi|529077728|ref|YP_008376731.1| - 0.15 11.5 0.6 0.15 11.5 0.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4501) A2L_zn_ribbon PF08792.5 gi|529077728|ref|YP_008376731.1| - 0.33 10.4 1.6 0.66 9.5 1.1 1.5 1 1 0 1 1 1 0 A2L zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|529077728|ref|YP_008376731.1| - 0.56 9.8 2.4 0.94 9.1 1.6 1.3 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.5 gi|529077728|ref|YP_008376731.1| - 0.93 9.5 3.2 2.4 8.1 2.2 1.8 1 1 0 1 1 1 0 Zinc ribbon domain PepSY_TM_2 PF13703.1 gi|529077729|ref|YP_008376732.1| - 0.013 15.6 0.4 0.015 15.4 0.3 1.3 1 0 0 1 1 1 0 PepSY-associated TM helix Bac_luciferase PF00296.15 gi|529077730|ref|YP_008376733.1| - 1.6e-62 211.4 12.3 2e-62 211.0 8.6 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase F420_ligase PF01996.11 gi|529077731|ref|YP_008376734.1| - 1.5e-65 220.4 0.1 1.8e-65 220.2 0.1 1.1 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase Metallophos_2 PF12850.2 gi|529077732|ref|YP_008376735.1| - 5.5e-24 84.7 0.1 6.3e-24 84.5 0.1 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain IF-2B PF01008.12 gi|529077734|ref|YP_008376737.1| - 2.1e-38 131.9 0.0 2.6e-38 131.6 0.0 1.1 1 0 0 1 1 1 1 Initiation factor 2 subunit family NUDIX PF00293.23 gi|529077734|ref|YP_008376737.1| - 2.6e-10 40.0 0.4 5.3e-10 39.0 0.3 1.4 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|529077734|ref|YP_008376737.1| - 0.028 13.8 0.0 0.072 12.5 0.0 1.6 1 1 0 1 1 1 0 NUDIX domain Glyco_hydro_43 PF04616.9 gi|529077736|ref|YP_008376739.1| - 9.6e-89 297.2 0.1 1.2e-88 296.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 43 Rhodanese PF00581.15 gi|529077737|ref|YP_008376740.1| - 2.5e-16 60.0 0.0 2.9e-16 59.8 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain NUDIX PF00293.23 gi|529077738|ref|YP_008376741.1| - 5.5e-15 55.1 0.4 7.6e-15 54.7 0.2 1.2 1 0 0 1 1 1 1 NUDIX domain Chorion_S16 PF05836.7 gi|529077738|ref|YP_008376741.1| - 0.11 12.3 0.0 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 Chorion protein S16 zf-Di19 PF05605.7 gi|529077741|ref|YP_008376744.1| - 0.38 10.9 2.2 0.7 10.0 0.1 2.0 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Acetyltransf_1 PF00583.19 gi|529077742|ref|YP_008376745.1| - 1.3e-12 47.5 0.1 1.9e-12 47.0 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|529077742|ref|YP_008376745.1| - 1e-08 35.2 0.0 1.4e-08 34.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|529077742|ref|YP_008376745.1| - 6.4e-05 23.0 0.0 9.3e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|529077742|ref|YP_008376745.1| - 0.00022 20.9 0.0 0.00037 20.2 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|529077742|ref|YP_008376745.1| - 0.0029 17.4 0.0 0.005 16.6 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|529077742|ref|YP_008376745.1| - 0.025 14.4 0.0 0.036 13.9 0.0 1.5 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain PrsW-protease PF13367.1 gi|529077744|ref|YP_008376747.1| - 2e-39 134.7 19.9 3.9e-39 133.8 13.8 1.5 1 0 0 1 1 1 1 Protease prsW family DUF2370 PF10176.4 gi|529077744|ref|YP_008376747.1| - 0.19 11.0 0.5 3.6 6.8 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2370) YbgT_YccB PF08173.6 gi|529077744|ref|YP_008376747.1| - 2.8 7.8 7.6 0.68 9.8 2.3 2.4 2 0 0 2 2 2 0 Membrane bound YbgT-like protein SNO PF01174.14 gi|529077745|ref|YP_008376748.1| - 9.3e-51 172.1 0.0 1.2e-50 171.8 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|529077745|ref|YP_008376748.1| - 1.8e-09 37.3 0.0 4.1e-09 36.2 0.0 1.6 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.12 gi|529077745|ref|YP_008376748.1| - 0.00021 21.0 0.0 0.0003 20.5 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 GATase PF00117.23 gi|529077745|ref|YP_008376748.1| - 0.00035 20.0 0.0 0.0011 18.4 0.0 1.7 1 1 0 1 1 1 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.19 gi|529077745|ref|YP_008376748.1| - 0.00041 19.8 0.1 0.00058 19.3 0.1 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|529077745|ref|YP_008376748.1| - 0.0033 16.7 0.1 0.0057 15.9 0.1 1.4 1 1 0 1 1 1 1 Putative amidotransferase Peptidase_C26 PF07722.8 gi|529077745|ref|YP_008376748.1| - 0.03 13.7 0.7 3 7.2 0.0 3.2 2 1 1 3 3 3 0 Peptidase C26 DUF4154 PF13689.1 gi|529077745|ref|YP_008376748.1| - 0.043 13.4 0.0 0.075 12.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4154) BPL_N PF09825.4 gi|529077745|ref|YP_008376748.1| - 0.044 12.5 0.0 0.072 11.8 0.0 1.3 1 0 0 1 1 1 0 Biotin-protein ligase, N terminal Bac_Ubq_Cox PF01654.12 gi|529077747|ref|YP_008376750.1| - 1.7e-132 441.9 20.8 1.9e-132 441.7 14.4 1.0 1 0 0 1 1 1 1 Bacterial Cytochrome Ubiquinol Oxidase DUF2627 PF11118.3 gi|529077747|ref|YP_008376750.1| - 0.0052 16.8 0.2 0.0052 16.8 0.1 2.7 3 0 0 3 3 3 1 Protein of unknown function (DUF2627) Mit_proteolip PF08039.6 gi|529077747|ref|YP_008376750.1| - 0.18 11.7 2.1 1.3 9.0 0.1 2.7 3 0 0 3 3 3 0 Mitochondrial proteolipid Cyto_ox_2 PF02322.10 gi|529077748|ref|YP_008376751.1| - 9.6e-64 215.6 30.1 2.4e-63 214.3 20.8 1.5 1 1 0 1 1 1 1 Cytochrome oxidase subunit II PRA-PH PF01503.12 gi|529077749|ref|YP_008376752.1| - 1.5e-15 57.1 1.9 1.7e-15 57.0 1.3 1.0 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.12 gi|529077749|ref|YP_008376752.1| - 0.0023 17.8 1.5 0.0036 17.2 1.0 1.3 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain NTP_transf_2 PF01909.18 gi|529077750|ref|YP_008376753.1| - 3.5e-11 43.2 2.6 4.6e-11 42.9 1.8 1.3 1 1 0 1 1 1 1 Nucleotidyltransferase domain PMSR PF01625.16 gi|529077752|ref|YP_008376755.1| - 5.4e-66 221.2 0.8 6.4e-66 221.0 0.5 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase Pyr_redox_2 PF07992.9 gi|529077753|ref|YP_008376756.1| - 6.3e-22 78.4 2.7 2.1e-21 76.7 1.8 2.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|529077753|ref|YP_008376756.1| - 1.1e-12 48.1 0.2 6.5e-11 42.4 0.0 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|529077753|ref|YP_008376756.1| - 4.3e-10 39.9 0.0 4.4e-08 33.4 0.0 2.4 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|529077753|ref|YP_008376756.1| - 1.5e-06 27.3 1.9 0.00058 18.8 0.1 2.6 2 1 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|529077753|ref|YP_008376756.1| - 3.8e-05 22.3 0.2 0.14 10.5 0.0 3.3 4 0 0 4 4 4 2 HI0933-like protein FAD_binding_2 PF00890.19 gi|529077753|ref|YP_008376756.1| - 0.00072 18.5 4.4 0.0014 17.5 0.0 3.0 2 1 0 3 3 3 1 FAD binding domain NAD_binding_8 PF13450.1 gi|529077753|ref|YP_008376756.1| - 0.0044 16.9 0.1 0.018 15.0 0.0 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.1 gi|529077753|ref|YP_008376756.1| - 0.0059 16.8 0.1 0.065 13.5 0.1 2.3 2 1 0 2 2 2 1 Putative NAD(P)-binding FAD_oxidored PF12831.2 gi|529077753|ref|YP_008376756.1| - 0.028 13.5 0.0 0.048 12.7 0.0 1.4 1 0 0 1 1 1 0 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|529077753|ref|YP_008376756.1| - 0.051 12.1 1.8 2.7 6.5 0.1 2.7 3 0 0 3 3 3 0 Tryptophan halogenase Thi4 PF01946.12 gi|529077753|ref|YP_008376756.1| - 0.066 12.2 0.0 0.39 9.7 0.0 2.0 2 0 0 2 2 2 0 Thi4 family DUF1641 PF07849.6 gi|529077754|ref|YP_008376757.1| - 1.4e-13 50.2 2.4 8.3e-13 47.7 0.2 2.5 1 1 1 2 2 2 1 Protein of unknown function (DUF1641) Pyr_redox_2 PF07992.9 gi|529077755|ref|YP_008376758.1| - 2.8e-15 56.7 0.0 4e-15 56.2 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|529077755|ref|YP_008376758.1| - 6.4e-07 29.2 0.2 0.012 15.3 0.0 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding DAO PF01266.19 gi|529077755|ref|YP_008376758.1| - 0.00027 19.9 0.8 0.084 11.7 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase AAA_18 PF13238.1 gi|529077755|ref|YP_008376758.1| - 0.023 15.0 0.0 3.5 7.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain HI0933_like PF03486.9 gi|529077755|ref|YP_008376758.1| - 0.11 10.9 0.2 14 3.9 0.0 2.9 3 0 0 3 3 3 0 HI0933-like protein Pyr_redox PF00070.22 gi|529077755|ref|YP_008376758.1| - 0.13 12.7 1.3 14 6.1 0.0 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase TusA PF01206.12 gi|529077756|ref|YP_008376759.1| - 1.8e-14 53.0 0.0 1.8e-14 53.0 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DrsE_2 PF13686.1 gi|529077757|ref|YP_008376760.1| - 1.7e-11 44.1 0.5 1.8e-09 37.5 0.4 2.0 1 1 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.10 gi|529077757|ref|YP_008376760.1| - 0.0051 16.8 0.0 0.0091 16.0 0.0 1.4 1 1 0 1 1 1 1 DsrE/DsrF-like family MgtE PF01769.11 gi|529077758|ref|YP_008376761.1| - 3.2e-19 69.5 5.4 3.2e-19 69.5 3.7 1.3 2 0 0 2 2 2 1 Divalent cation transporter TMEM237 PF15383.1 gi|529077758|ref|YP_008376761.1| - 0.17 11.0 0.2 0.34 10.0 0.1 1.4 1 0 0 1 1 1 0 Transmembrane protein 237 Cation_efflux PF01545.16 gi|529077758|ref|YP_008376761.1| - 0.65 9.0 5.6 6.7 5.6 0.1 2.1 1 1 1 2 2 2 0 Cation efflux family Claudin_2 PF13903.1 gi|529077758|ref|YP_008376761.1| - 7.8 6.1 12.8 2.1 8.0 6.6 1.7 1 1 1 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction MgtE PF01769.11 gi|529077759|ref|YP_008376762.1| - 8.8e-20 71.3 12.9 1.5e-19 70.5 9.0 1.3 1 0 0 1 1 1 1 Divalent cation transporter HAD_2 PF13419.1 gi|529077760|ref|YP_008376763.1| - 9e-25 87.8 2.1 1e-24 87.7 1.4 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|529077760|ref|YP_008376763.1| - 1.7e-10 41.6 1.7 1e-08 35.8 1.1 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|529077760|ref|YP_008376763.1| - 4.3e-10 39.1 0.8 1.1e-09 37.9 0.1 2.0 2 0 0 2 2 2 1 HAD-hyrolase-like HAD PF12710.2 gi|529077760|ref|YP_008376763.1| - 0.011 15.8 2.5 0.027 14.6 1.7 1.6 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|529077760|ref|YP_008376763.1| - 0.14 11.7 0.3 5.9 6.3 0.1 2.1 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase FtsJ PF01728.14 gi|529077761|ref|YP_008376764.1| - 3.1e-53 180.4 0.0 3.8e-53 180.1 0.0 1.1 1 0 0 1 1 1 1 FtsJ-like methyltransferase TRAM PF01938.15 gi|529077761|ref|YP_008376764.1| - 6.5e-12 45.0 2.2 1.2e-11 44.1 1.6 1.5 1 0 0 1 1 1 1 TRAM domain Methyltransf_31 PF13847.1 gi|529077761|ref|YP_008376764.1| - 0.0019 17.8 0.0 0.0082 15.7 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|529077761|ref|YP_008376764.1| - 0.0025 17.8 0.4 0.0049 16.8 0.2 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|529077761|ref|YP_008376764.1| - 0.0066 16.1 0.0 0.014 15.1 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|529077761|ref|YP_008376764.1| - 0.0074 16.8 0.3 0.026 15.0 0.2 1.9 1 1 0 1 1 1 1 Methyltransferase domain NSP13 PF06460.7 gi|529077761|ref|YP_008376764.1| - 0.037 12.8 0.0 0.05 12.4 0.0 1.1 1 0 0 1 1 1 0 Coronavirus NSP13 TrkA_N PF02254.13 gi|529077761|ref|YP_008376764.1| - 0.042 13.8 0.1 0.076 13.0 0.0 1.4 1 0 0 1 1 1 0 TrkA-N domain Antitoxin-MazE PF04014.13 gi|529077761|ref|YP_008376764.1| - 9.2 6.1 6.2 15 5.4 0.5 2.7 3 0 0 3 3 3 0 Antidote-toxin recognition MazE DUF1743 PF08489.6 gi|529077762|ref|YP_008376765.1| - 1.1e-34 118.6 0.0 1.9e-34 117.9 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) OrfB_Zn_ribbon PF07282.6 gi|529077762|ref|YP_008376765.1| - 0.0062 16.1 1.1 0.012 15.1 0.7 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain IBR PF01485.16 gi|529077762|ref|YP_008376765.1| - 0.015 15.1 0.1 0.024 14.4 0.1 1.3 1 0 0 1 1 1 0 IBR domain Zn_Tnp_IS1595 PF12760.2 gi|529077762|ref|YP_008376765.1| - 0.021 14.5 0.9 0.047 13.4 0.6 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain HypA PF01155.14 gi|529077762|ref|YP_008376765.1| - 0.064 12.9 0.3 0.13 11.9 0.2 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family RNA_POL_M_15KD PF02150.11 gi|529077762|ref|YP_008376765.1| - 0.075 12.7 1.6 0.14 11.8 1.1 1.4 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit Zn-ribbon_8 PF09723.5 gi|529077762|ref|YP_008376765.1| - 0.09 12.7 2.6 6.9 6.7 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain zinc-ribbons_6 PF07191.7 gi|529077762|ref|YP_008376765.1| - 0.13 12.1 0.4 0.21 11.4 0.3 1.3 1 0 0 1 1 1 0 zinc-ribbons C1_1 PF00130.17 gi|529077762|ref|YP_008376765.1| - 0.17 11.6 0.2 0.31 10.8 0.2 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) A2L_zn_ribbon PF08792.5 gi|529077762|ref|YP_008376765.1| - 0.2 11.1 0.2 0.41 10.1 0.1 1.5 1 0 0 1 1 1 0 A2L zinc ribbon domain DZR PF12773.2 gi|529077762|ref|YP_008376765.1| - 0.21 11.4 1.9 0.41 10.5 1.3 1.4 1 0 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|529077762|ref|YP_008376765.1| - 4.5 6.6 6.8 17 4.8 0.2 3.1 2 1 0 3 3 3 0 TFIIB zinc-binding zf-IS66 PF13005.2 gi|529077762|ref|YP_008376765.1| - 6.8 6.7 7.5 1.8 8.6 0.4 2.6 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 HTH_3 PF01381.17 gi|529077763|ref|YP_008376766.1| - 3.2e-10 39.6 0.0 6.3e-10 38.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|529077763|ref|YP_008376766.1| - 2.4e-07 30.8 0.1 1e-06 28.7 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|529077763|ref|YP_008376766.1| - 6.3e-07 29.3 0.0 1.3e-06 28.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|529077763|ref|YP_008376766.1| - 0.00036 20.1 0.0 0.0013 18.3 0.0 1.9 2 0 0 2 2 2 1 HTH domain HTH_25 PF13413.1 gi|529077763|ref|YP_008376766.1| - 0.0024 17.4 0.0 0.0051 16.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|529077763|ref|YP_008376766.1| - 0.007 15.9 0.0 0.022 14.4 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4 PF04545.11 gi|529077763|ref|YP_008376766.1| - 0.008 15.4 0.0 0.018 14.3 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_28 PF13518.1 gi|529077763|ref|YP_008376766.1| - 0.021 14.8 0.0 0.051 13.5 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.17 gi|529077763|ref|YP_008376766.1| - 0.046 13.4 0.0 3.7 7.3 0.0 2.5 2 0 0 2 2 2 0 MarR family HTH_10 PF04967.7 gi|529077763|ref|YP_008376766.1| - 0.093 12.3 0.0 0.2 11.2 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain NUMOD1 PF07453.8 gi|529077763|ref|YP_008376766.1| - 0.1 12.4 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 NUMOD1 domain HTH_AraC PF00165.18 gi|529077763|ref|YP_008376766.1| - 0.1 12.4 0.0 0.3 10.9 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_36 PF13730.1 gi|529077763|ref|YP_008376766.1| - 0.14 12.2 0.0 3.3 7.9 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_37 PF13744.1 gi|529077763|ref|YP_008376766.1| - 0.14 11.9 0.0 1.6 8.6 0.0 2.4 3 0 0 3 3 3 0 Helix-turn-helix domain Epimerase_2 PF02350.14 gi|529077764|ref|YP_008376767.1| - 5.9e-75 252.1 0.0 7.1e-75 251.9 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase HpcH_HpaI PF03328.9 gi|529077765|ref|YP_008376768.1| - 4.5e-32 110.7 0.0 6.3e-32 110.2 0.0 1.1 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family GST_N_3 PF13417.1 gi|529077766|ref|YP_008376769.1| - 5.1e-16 58.6 0.0 5.6e-16 58.5 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.19 gi|529077766|ref|YP_008376769.1| - 1.5e-15 56.9 0.0 2.4e-15 56.2 0.0 1.3 2 0 0 2 2 2 1 Glutaredoxin GST_N_2 PF13409.1 gi|529077766|ref|YP_008376769.1| - 2e-11 43.7 0.0 2.3e-11 43.5 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.15 gi|529077766|ref|YP_008376769.1| - 0.00058 19.9 0.0 0.00069 19.7 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain ArsC PF03960.10 gi|529077766|ref|YP_008376769.1| - 0.0064 16.5 0.0 0.0089 16.0 0.0 1.2 1 1 0 1 1 1 1 ArsC family DUF836 PF05768.9 gi|529077766|ref|YP_008376769.1| - 0.0076 16.4 0.2 0.0089 16.2 0.2 1.4 1 1 0 1 1 1 1 Glutaredoxin-like domain (DUF836) DUF4224 PF13986.1 gi|529077766|ref|YP_008376769.1| - 0.0082 15.6 0.0 0.028 13.9 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4224) Thioredoxin_4 PF13462.1 gi|529077766|ref|YP_008376769.1| - 0.025 14.5 0.1 0.22 11.5 0.0 1.9 1 1 1 2 2 2 0 Thioredoxin Xan_ur_permease PF00860.15 gi|529077767|ref|YP_008376770.1| - 7e-36 123.5 41.7 1.3e-35 122.6 28.9 1.5 1 1 0 1 1 1 1 Permease family Pribosyltran PF00156.22 gi|529077768|ref|YP_008376771.1| - 4.7e-14 52.1 0.3 7.9e-14 51.4 0.2 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_3 PF01381.17 gi|529077768|ref|YP_008376771.1| - 4e-06 26.5 0.0 2.7e-05 23.9 0.0 2.3 3 0 0 3 3 3 1 Helix-turn-helix HTH_24 PF13412.1 gi|529077768|ref|YP_008376771.1| - 0.001 18.3 0.3 0.0063 15.8 0.1 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_31 PF13560.1 gi|529077768|ref|YP_008376771.1| - 0.0024 18.0 2.6 0.0034 17.5 0.4 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|529077768|ref|YP_008376771.1| - 0.034 13.6 1.2 0.12 11.8 0.1 2.5 2 1 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_19 PF12844.2 gi|529077768|ref|YP_008376771.1| - 0.11 12.5 0.0 0.23 11.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Pribosyltran PF00156.22 gi|529077769|ref|YP_008376772.1| - 1.3e-10 41.0 4.2 6.2e-10 38.8 2.9 1.9 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|529077769|ref|YP_008376772.1| - 0.00061 19.0 0.2 0.00077 18.7 0.1 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|529077769|ref|YP_008376772.1| - 0.033 13.4 1.3 0.041 13.1 0.2 1.6 2 0 0 2 2 2 0 Phosphoribosyl transferase bPH_2 PF03703.9 gi|529077770|ref|YP_008376773.1| - 8e-20 70.6 0.1 1.2e-19 70.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial PH domain Flagellin_N PF00669.15 gi|529077771|ref|YP_008376774.1| - 0.059 13.1 0.0 13 5.5 0.0 2.6 1 1 1 2 2 2 0 Bacterial flagellin N-terminal helical region MCC-bdg_PDZ PF10506.4 gi|529077771|ref|YP_008376774.1| - 0.75 9.6 5.2 3.3 7.5 0.1 3.3 3 1 0 3 3 3 0 PDZ domain of MCC-2 bdg protein for Usher syndrome PilJ PF13675.1 gi|529077771|ref|YP_008376774.1| - 4.5 7.6 17.2 0.39 11.0 0.9 3.9 2 2 3 5 5 5 0 Type IV pili methyl-accepting chemotaxis transducer N-term DUF501 PF04417.7 gi|529077771|ref|YP_008376774.1| - 6.5 6.6 16.5 0.72 9.6 0.4 3.6 2 2 2 4 4 4 0 Protein of unknown function (DUF501) Mnd1 PF03962.10 gi|529077771|ref|YP_008376774.1| - 9.4 5.8 12.6 20 4.7 0.1 3.4 2 1 0 3 3 3 0 Mnd1 family PRA-CH PF01502.13 gi|529077772|ref|YP_008376775.1| - 3.1e-35 119.6 0.2 6.3e-35 118.6 0.0 1.5 2 0 0 2 2 2 1 Phosphoribosyl-AMP cyclohydrolase Arc_PepC_II PF06847.6 gi|529077773|ref|YP_008376776.1| - 4.3e-16 59.1 0.0 7.4e-16 58.3 0.0 1.3 1 0 0 1 1 1 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.13 gi|529077773|ref|YP_008376776.1| - 2.5e-08 34.0 11.3 2.5e-08 34.0 7.9 1.8 2 0 0 2 2 2 1 Type IV leader peptidase family Fer2 PF00111.22 gi|529077774|ref|YP_008376777.1| - 2.4e-15 56.0 0.3 3.3e-15 55.5 0.2 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|529077774|ref|YP_008376777.1| - 0.11 12.3 0.1 0.21 11.4 0.0 1.5 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain NPV_P10 PF05531.7 gi|529077775|ref|YP_008376778.1| - 2.1e-08 34.2 5.9 0.01 16.0 0.1 4.1 1 1 3 4 4 4 3 Nucleopolyhedrovirus P10 protein AAA_13 PF13166.1 gi|529077775|ref|YP_008376778.1| - 2.4e-07 29.6 0.4 3.7e-07 29.0 0.3 1.2 1 0 0 1 1 1 1 AAA domain Baculo_PEP_C PF04513.7 gi|529077775|ref|YP_008376778.1| - 3.2e-07 30.2 0.8 4.6e-05 23.2 1.0 2.3 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus Reo_sigmaC PF04582.7 gi|529077775|ref|YP_008376778.1| - 8.4e-07 28.4 3.3 3.8e-05 23.0 1.7 2.1 1 1 1 2 2 2 1 Reovirus sigma C capsid protein IncA PF04156.9 gi|529077775|ref|YP_008376778.1| - 7.2e-06 25.7 3.8 0.00028 20.5 2.7 2.1 1 1 0 1 1 1 1 IncA protein BLOC1_2 PF10046.4 gi|529077775|ref|YP_008376778.1| - 2.6e-05 24.2 3.6 0.75 9.9 0.2 3.9 1 1 2 3 3 3 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Spc7 PF08317.6 gi|529077775|ref|YP_008376778.1| - 3.3e-05 22.7 2.2 4.7e-05 22.1 1.5 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein ATG16 PF08614.6 gi|529077775|ref|YP_008376778.1| - 3.4e-05 23.7 5.7 6.6e-05 22.8 3.5 1.7 1 1 0 1 1 1 1 Autophagy protein 16 (ATG16) SlyX PF04102.7 gi|529077775|ref|YP_008376778.1| - 3.6e-05 24.0 6.5 0.11 12.8 0.3 3.8 1 1 2 3 3 3 2 SlyX Fib_alpha PF08702.5 gi|529077775|ref|YP_008376778.1| - 5.7e-05 23.2 0.4 0.00018 21.6 0.3 1.9 2 1 0 2 2 1 1 Fibrinogen alpha/beta chain family HrpB7 PF09486.5 gi|529077775|ref|YP_008376778.1| - 5.8e-05 23.0 6.7 0.0023 17.8 2.1 2.9 1 1 2 3 3 3 1 Bacterial type III secretion protein (HrpB7) Filament PF00038.16 gi|529077775|ref|YP_008376778.1| - 7e-05 22.4 1.8 0.021 14.3 0.1 2.1 1 1 1 2 2 2 1 Intermediate filament protein IFT57 PF10498.4 gi|529077775|ref|YP_008376778.1| - 7.1e-05 21.7 0.9 7.1e-05 21.7 0.6 1.4 2 0 0 2 2 1 1 Intra-flagellar transport protein 57 Laminin_II PF06009.7 gi|529077775|ref|YP_008376778.1| - 7.5e-05 22.5 3.5 0.00039 20.2 1.5 2.2 1 1 1 2 2 2 1 Laminin Domain II APG6 PF04111.7 gi|529077775|ref|YP_008376778.1| - 7.7e-05 21.8 2.3 0.00011 21.3 1.6 1.2 1 0 0 1 1 1 1 Autophagy protein Apg6 MscS_porin PF12795.2 gi|529077775|ref|YP_008376778.1| - 8.5e-05 21.9 0.9 0.00015 21.1 0.6 1.5 1 0 0 1 1 1 1 Mechanosensitive ion channel porin domain ADIP PF11559.3 gi|529077775|ref|YP_008376778.1| - 8.7e-05 22.4 1.6 0.00017 21.5 0.7 1.6 1 1 1 2 2 2 1 Afadin- and alpha -actinin-Binding EzrA PF06160.7 gi|529077775|ref|YP_008376778.1| - 0.00013 20.2 1.8 0.00031 19.0 1.0 1.7 1 1 0 1 1 1 1 Septation ring formation regulator, EzrA CENP-F_leu_zip PF10473.4 gi|529077775|ref|YP_008376778.1| - 0.00017 21.4 8.1 0.0016 18.3 4.9 2.2 1 1 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 PspA_IM30 PF04012.7 gi|529077775|ref|YP_008376778.1| - 0.00021 20.7 2.6 0.00021 20.7 1.8 1.8 2 0 0 2 2 1 1 PspA/IM30 family DUF1664 PF07889.7 gi|529077775|ref|YP_008376778.1| - 0.00051 19.8 3.5 0.044 13.5 1.1 2.9 1 1 2 3 3 3 2 Protein of unknown function (DUF1664) TMF_TATA_bd PF12325.3 gi|529077775|ref|YP_008376778.1| - 0.00053 19.7 7.6 0.0075 15.9 1.7 2.6 1 1 2 3 3 3 1 TATA element modulatory factor 1 TATA binding Prefoldin PF02996.12 gi|529077775|ref|YP_008376778.1| - 0.00058 19.4 3.4 0.1 12.2 0.2 3.5 1 1 1 3 3 3 1 Prefoldin subunit Uds1 PF15456.1 gi|529077775|ref|YP_008376778.1| - 0.00075 19.4 3.2 0.61 10.0 0.1 3.0 1 1 1 2 2 2 1 Up-regulated During Septation DUF3584 PF12128.3 gi|529077775|ref|YP_008376778.1| - 0.00078 16.9 2.5 0.001 16.5 1.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) DUF1978 PF09321.5 gi|529077775|ref|YP_008376778.1| - 0.0011 18.5 3.3 0.0019 17.6 2.3 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1978) Laminin_I PF06008.9 gi|529077775|ref|YP_008376778.1| - 0.0012 18.2 2.2 0.0083 15.4 1.6 1.9 1 1 1 2 2 2 1 Laminin Domain I Prefoldin_2 PF01920.15 gi|529077775|ref|YP_008376778.1| - 0.0013 18.5 4.2 3.9 7.2 0.7 3.5 1 1 1 3 3 3 0 Prefoldin subunit TBPIP PF07106.8 gi|529077775|ref|YP_008376778.1| - 0.0014 18.1 2.7 0.029 13.9 0.5 2.2 2 0 0 2 2 2 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Syntaxin-6_N PF09177.6 gi|529077775|ref|YP_008376778.1| - 0.0014 18.9 6.6 0.2 12.0 2.0 3.1 1 1 2 3 3 3 1 Syntaxin 6, N-terminal Atg14 PF10186.4 gi|529077775|ref|YP_008376778.1| - 0.0016 17.4 0.5 0.0023 16.9 0.4 1.1 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 GAS PF13851.1 gi|529077775|ref|YP_008376778.1| - 0.0018 17.4 1.8 0.028 13.5 0.5 2.0 1 1 1 2 2 2 1 Growth-arrest specific micro-tubule binding ALIX_LYPXL_bnd PF13949.1 gi|529077775|ref|YP_008376778.1| - 0.0021 17.0 1.4 0.0032 16.4 1.0 1.3 1 0 0 1 1 1 1 ALIX V-shaped domain binding to HIV WEMBL PF05701.6 gi|529077775|ref|YP_008376778.1| - 0.0021 16.5 4.8 0.0031 16.0 3.3 1.2 1 0 0 1 1 1 1 Weak chloroplast movement under blue light Lectin_N PF03954.9 gi|529077775|ref|YP_008376778.1| - 0.0029 16.9 0.6 0.0066 15.8 0.4 1.6 1 0 0 1 1 1 1 Hepatic lectin, N-terminal domain Taxilin PF09728.4 gi|529077775|ref|YP_008376778.1| - 0.0031 16.6 0.6 0.13 11.2 0.2 2.1 1 1 1 2 2 2 1 Myosin-like coiled-coil protein V_ATPase_I PF01496.14 gi|529077775|ref|YP_008376778.1| - 0.0032 15.4 1.5 0.0052 14.7 1.0 1.3 1 0 0 1 1 1 1 V-type ATPase 116kDa subunit family AAA_27 PF13514.1 gi|529077775|ref|YP_008376778.1| - 0.0047 14.6 7.6 0.0097 13.6 5.1 1.5 1 1 0 1 1 1 1 AAA domain Bacillus_HBL PF05791.6 gi|529077775|ref|YP_008376778.1| - 0.0063 15.9 1.0 2.2 7.6 0.1 2.1 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) Spectrin PF00435.16 gi|529077775|ref|YP_008376778.1| - 0.0065 16.7 3.0 2.1 8.6 0.1 3.1 1 1 2 3 3 2 0 Spectrin repeat DUF2730 PF10805.3 gi|529077775|ref|YP_008376778.1| - 0.0067 16.1 6.3 0.9 9.2 0.2 2.6 1 1 1 2 2 2 2 Protein of unknown function (DUF2730) Fmp27_WPPW PF10359.4 gi|529077775|ref|YP_008376778.1| - 0.0069 14.8 2.7 0.069 11.5 0.6 2.1 1 1 2 3 3 3 1 RNA pol II promoter Fmp27 protein domain Tropomyosin_1 PF12718.2 gi|529077775|ref|YP_008376778.1| - 0.0073 16.1 8.9 0.11 12.2 6.1 2.3 1 1 0 1 1 1 1 Tropomyosin like V-SNARE_C PF12352.3 gi|529077775|ref|YP_008376778.1| - 0.0077 16.2 0.3 0.018 15.0 0.2 1.7 1 0 0 1 1 1 1 Snare region anchored in the vesicle membrane C-terminus LPP PF04728.8 gi|529077775|ref|YP_008376778.1| - 0.0099 15.6 0.1 0.28 11.0 0.1 2.6 2 0 0 2 2 2 1 Lipoprotein leucine-zipper FlaC_arch PF05377.6 gi|529077775|ref|YP_008376778.1| - 0.013 15.3 6.0 0.58 10.0 0.7 3.8 3 1 2 5 5 4 0 Flagella accessory protein C (FlaC) Prefoldin_3 PF13758.1 gi|529077775|ref|YP_008376778.1| - 0.014 15.1 5.1 0.49 10.2 0.0 3.5 1 1 1 2 2 2 0 Prefoldin subunit Myosin_tail_1 PF01576.14 gi|529077775|ref|YP_008376778.1| - 0.015 13.0 7.8 0.029 12.1 5.2 1.3 1 1 0 1 1 1 0 Myosin tail Nsp1_C PF05064.8 gi|529077775|ref|YP_008376778.1| - 0.015 14.9 3.0 1.1 8.8 0.6 2.7 1 1 1 2 2 2 0 Nsp1-like C-terminal region DUF972 PF06156.8 gi|529077775|ref|YP_008376778.1| - 0.016 15.5 2.2 3 8.2 1.6 3.0 1 1 0 1 1 1 0 Protein of unknown function (DUF972) DUF948 PF06103.6 gi|529077775|ref|YP_008376778.1| - 0.018 14.9 4.9 1 9.2 0.2 2.4 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) COG2 PF06148.6 gi|529077775|ref|YP_008376778.1| - 0.018 14.8 4.2 1.8 8.4 0.2 2.8 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF812 PF05667.6 gi|529077775|ref|YP_008376778.1| - 0.022 13.3 4.9 0.051 12.0 3.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF812) DUF4200 PF13863.1 gi|529077775|ref|YP_008376778.1| - 0.023 14.6 2.0 2.3 8.2 1.1 3.0 1 1 1 3 3 3 0 Domain of unknown function (DUF4200) DUF3552 PF12072.3 gi|529077775|ref|YP_008376778.1| - 0.024 13.8 4.6 0.041 13.0 3.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) FliJ PF02050.11 gi|529077775|ref|YP_008376778.1| - 0.025 14.6 0.2 0.14 12.1 0.2 2.1 1 1 2 3 3 3 0 Flagellar FliJ protein DUF4618 PF15397.1 gi|529077775|ref|YP_008376778.1| - 0.025 13.8 1.8 0.05 12.9 1.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4618) Nup54 PF13874.1 gi|529077775|ref|YP_008376778.1| - 0.03 13.9 2.8 0.28 10.8 0.6 2.4 1 1 0 2 2 2 0 Nucleoporin complex subunit 54 EMP24_GP25L PF01105.19 gi|529077775|ref|YP_008376778.1| - 0.031 14.0 4.4 5.9 6.5 0.1 3.2 1 1 1 3 3 3 0 emp24/gp25L/p24 family/GOLD DUF1395 PF07160.7 gi|529077775|ref|YP_008376778.1| - 0.041 13.3 0.7 4.2 6.8 0.0 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1395) Lebercilin PF15619.1 gi|529077775|ref|YP_008376778.1| - 0.041 13.2 1.0 0.07 12.5 0.7 1.3 1 0 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease CorA PF01544.13 gi|529077775|ref|YP_008376778.1| - 0.046 12.7 7.1 0.72 8.8 2.7 2.5 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein DUF2968 PF11180.3 gi|529077775|ref|YP_008376778.1| - 0.046 13.0 1.5 0.091 12.1 1.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2968) DUF3450 PF11932.3 gi|529077775|ref|YP_008376778.1| - 0.054 12.7 1.7 0.15 11.3 1.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3450) MCPsignal PF00015.16 gi|529077775|ref|YP_008376778.1| - 0.059 12.9 5.4 0.067 12.7 0.5 2.0 1 1 1 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Snapin_Pallidin PF14712.1 gi|529077775|ref|YP_008376778.1| - 0.071 13.4 0.1 6.3 7.1 0.2 2.7 1 1 0 2 2 2 0 Snapin/Pallidin DUF848 PF05852.6 gi|529077775|ref|YP_008376778.1| - 0.077 12.8 7.7 0.38 10.5 1.8 2.4 1 1 1 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) Seryl_tRNA_N PF02403.17 gi|529077775|ref|YP_008376778.1| - 0.084 12.8 2.2 2.4 8.2 0.7 2.5 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain COG5 PF10392.4 gi|529077775|ref|YP_008376778.1| - 0.084 12.8 1.2 0.75 9.7 0.2 2.0 1 1 1 2 2 2 0 Golgi transport complex subunit 5 WXG100 PF06013.7 gi|529077775|ref|YP_008376778.1| - 0.089 12.7 1.0 19 5.3 0.0 3.3 1 1 0 2 2 2 0 Proteins of 100 residues with WXG TPR_MLP1_2 PF07926.7 gi|529077775|ref|YP_008376778.1| - 0.11 12.2 3.7 0.69 9.6 2.6 2.2 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein THOC7 PF05615.8 gi|529077775|ref|YP_008376778.1| - 0.13 12.5 2.3 0.57 10.4 1.7 2.0 1 1 0 1 1 1 0 Tho complex subunit 7 Gp58 PF07902.6 gi|529077775|ref|YP_008376778.1| - 0.13 10.4 3.4 0.28 9.3 2.3 1.4 1 1 0 1 1 1 0 gp58-like protein Cortex-I_coil PF09304.5 gi|529077775|ref|YP_008376778.1| - 0.13 12.3 5.0 0.092 12.7 1.9 1.9 2 0 0 2 2 1 0 Cortexillin I, coiled coil Tropomyosin PF00261.15 gi|529077775|ref|YP_008376778.1| - 0.13 11.3 9.8 0.49 9.4 6.8 1.9 1 1 0 1 1 1 0 Tropomyosin zf-C4H2 PF10146.4 gi|529077775|ref|YP_008376778.1| - 0.14 12.2 4.3 0.7 9.8 1.4 1.9 1 1 1 2 2 2 0 Zinc finger-containing protein DUF677 PF05055.7 gi|529077775|ref|YP_008376778.1| - 0.14 10.7 3.2 0.8 8.3 2.2 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF677) DUF724 PF05266.9 gi|529077775|ref|YP_008376778.1| - 0.15 11.6 1.0 0.23 11.0 0.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF724) V-SNARE PF05008.10 gi|529077775|ref|YP_008376778.1| - 0.18 12.0 1.4 1.1 9.4 0.3 2.5 1 1 1 2 2 2 0 Vesicle transport v-SNARE protein N-terminus TMPIT PF07851.8 gi|529077775|ref|YP_008376778.1| - 0.19 10.7 0.2 0.66 8.9 0.2 1.7 1 1 1 2 2 2 0 TMPIT-like protein TMF_DNA_bd PF12329.3 gi|529077775|ref|YP_008376778.1| - 0.24 11.2 5.0 0.61 9.9 2.4 2.4 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding DivIC PF04977.10 gi|529077775|ref|YP_008376778.1| - 0.25 10.8 2.7 15 5.1 0.1 3.0 2 1 1 3 3 3 0 Septum formation initiator DUF641 PF04859.7 gi|529077775|ref|YP_008376778.1| - 0.25 11.0 1.3 6.8 6.4 0.0 2.4 1 1 2 3 3 2 0 Plant protein of unknown function (DUF641) MtrG PF04210.8 gi|529077775|ref|YP_008376778.1| - 0.48 10.1 3.3 35 4.1 0.1 3.6 2 1 2 4 4 4 0 Tetrahydromethanopterin S-methyltransferase, subunit G Syntaxin PF00804.20 gi|529077775|ref|YP_008376778.1| - 0.51 10.5 3.5 3.2 7.9 2.5 2.4 1 1 0 1 1 1 0 Syntaxin Mnd1 PF03962.10 gi|529077775|ref|YP_008376778.1| - 0.52 9.9 3.1 3.2 7.3 2.2 2.1 1 1 0 1 1 1 0 Mnd1 family FUSC PF04632.7 gi|529077775|ref|YP_008376778.1| - 0.54 8.6 4.4 0.77 8.1 3.1 1.3 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF4140 PF13600.1 gi|529077775|ref|YP_008376778.1| - 0.54 10.7 12.0 1.9 8.9 0.4 4.1 2 1 1 3 3 2 0 N-terminal domain of unknown function (DUF4140) Lge1 PF11488.3 gi|529077775|ref|YP_008376778.1| - 0.74 10.0 4.9 8.5 6.6 3.3 2.8 1 1 0 1 1 1 0 Transcriptional regulatory protein LGE1 ERM PF00769.14 gi|529077775|ref|YP_008376778.1| - 1 8.8 12.0 0.031 13.8 1.5 2.5 3 1 0 3 3 1 0 Ezrin/radixin/moesin family DUF4164 PF13747.1 gi|529077775|ref|YP_008376778.1| - 1.6 8.9 11.6 1.9 8.6 2.8 3.0 2 1 1 3 3 2 0 Domain of unknown function (DUF4164) Spc24 PF08286.6 gi|529077775|ref|YP_008376778.1| - 2.4 7.8 4.9 7.9 6.2 0.1 2.7 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 DUF605 PF04652.11 gi|529077775|ref|YP_008376778.1| - 8.3 5.7 10.8 0.34 10.2 3.7 1.4 2 0 0 2 2 1 0 Vta1 like Ribonuc_L-PSP PF01042.16 gi|529077776|ref|YP_008376779.1| - 3.2e-41 139.8 1.5 3.5e-41 139.7 1.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP DUF1615 PF07759.7 gi|529077776|ref|YP_008376779.1| - 0.049 12.3 0.0 0.055 12.2 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1615) DUF348 PF03990.9 gi|529077776|ref|YP_008376779.1| - 0.052 13.1 2.3 0.39 10.3 0.3 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF348) GATase PF00117.23 gi|529077778|ref|YP_008376781.1| - 2.6e-33 115.1 0.0 2.9e-33 114.9 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|529077778|ref|YP_008376781.1| - 7.6e-11 41.8 0.1 1.6e-10 40.7 0.1 1.5 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.14 gi|529077778|ref|YP_008376781.1| - 1.9e-07 30.9 0.0 2.4e-06 27.3 0.0 2.0 1 1 0 1 1 1 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.8 gi|529077778|ref|YP_008376781.1| - 4.5e-06 26.2 0.8 6e-05 22.5 0.5 2.4 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.19 gi|529077778|ref|YP_008376781.1| - 0.004 16.6 0.0 0.0074 15.7 0.0 1.4 1 0 0 1 1 1 1 DJ-1/PfpI family UDG PF03167.14 gi|529077780|ref|YP_008376783.1| - 6.1e-36 123.1 0.0 7.3e-36 122.9 0.0 1.0 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DUF1127 PF06568.6 gi|529077780|ref|YP_008376783.1| - 0.092 12.1 1.1 0.21 11.0 0.8 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1127) XPG_I PF00867.13 gi|529077780|ref|YP_008376783.1| - 0.15 12.1 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 XPG I-region DUF99 PF01949.11 gi|529077781|ref|YP_008376784.1| - 3.9e-50 169.5 0.0 4.8e-50 169.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 Lactamase_B PF00753.22 gi|529077783|ref|YP_008376786.1| - 3.3e-15 56.2 8.6 4.5e-15 55.8 5.9 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|529077783|ref|YP_008376786.1| - 0.0014 18.1 1.2 0.0024 17.4 0.8 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|529077783|ref|YP_008376786.1| - 0.01 15.5 0.1 0.015 15.0 0.1 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Cep57_MT_bd PF06657.8 gi|529077783|ref|YP_008376786.1| - 0.13 12.1 0.0 16 5.4 0.0 2.3 2 0 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 DUF86 PF01934.12 gi|529077784|ref|YP_008376787.1| - 1.7e-24 85.7 0.3 2.1e-24 85.4 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 NTase_sub_bind PF08780.6 gi|529077784|ref|YP_008376787.1| - 0.0071 16.1 0.2 0.0085 15.8 0.2 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase substrate binding protein like NTP_transf_2 PF01909.18 gi|529077785|ref|YP_008376788.1| - 2.7e-06 27.6 1.3 3.8e-06 27.1 0.9 1.5 1 1 0 1 1 1 1 Nucleotidyltransferase domain tRNA-synt_2b PF00587.20 gi|529077786|ref|YP_008376789.1| - 6.7e-36 123.4 0.0 1e-35 122.8 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.17 gi|529077786|ref|YP_008376789.1| - 9.7e-30 102.7 5.4 1.5e-29 102.1 3.8 1.3 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain DUF342 PF03961.8 gi|529077786|ref|YP_008376789.1| - 0.026 12.9 1.5 0.036 12.4 1.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) tRNA-synt_His PF13393.1 gi|529077786|ref|YP_008376789.1| - 0.032 13.2 2.0 0.31 10.0 0.0 2.2 2 0 0 2 2 2 0 Histidyl-tRNA synthetase PilJ PF13675.1 gi|529077786|ref|YP_008376789.1| - 0.055 13.7 0.8 0.14 12.4 0.5 1.7 1 0 0 1 1 1 0 Type IV pili methyl-accepting chemotaxis transducer N-term Mnd1 PF03962.10 gi|529077786|ref|YP_008376789.1| - 0.12 12.0 4.5 0.21 11.2 3.1 1.2 1 0 0 1 1 1 0 Mnd1 family TBPIP PF07106.8 gi|529077786|ref|YP_008376789.1| - 0.57 9.7 3.0 0.95 8.9 2.1 1.2 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) IncA PF04156.9 gi|529077786|ref|YP_008376789.1| - 0.88 9.1 8.0 2 7.9 5.5 1.6 1 0 0 1 1 1 0 IncA protein APG6 PF04111.7 gi|529077786|ref|YP_008376789.1| - 1.3 8.0 4.4 5.9 5.8 3.7 1.5 2 0 0 2 2 2 0 Autophagy protein Apg6 DUF1771 PF08590.5 gi|529077786|ref|YP_008376789.1| - 1.6 8.7 6.4 0.79 9.7 1.4 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF1771) AAA_23 PF13476.1 gi|529077786|ref|YP_008376789.1| - 3.9 7.7 5.7 6.3 7.0 3.9 1.3 1 0 0 1 1 1 0 AAA domain Fer4_15 PF13459.1 gi|529077787|ref|YP_008376790.1| - 0.00029 21.3 0.3 0.0005 20.5 0.1 1.5 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|529077787|ref|YP_008376790.1| - 0.088 13.2 0.2 0.16 12.4 0.1 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain Glycos_transf_3 PF00591.16 gi|529077788|ref|YP_008376791.1| - 2.1e-31 109.2 0.0 4.1e-31 108.2 0.0 1.4 2 0 0 2 2 2 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|529077788|ref|YP_008376791.1| - 2.1e-13 49.6 0.1 4.6e-13 48.5 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain TP_methylase PF00590.15 gi|529077789|ref|YP_008376792.1| - 4.3e-49 167.0 3.5 5.3e-49 166.7 2.4 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF4350 PF14258.1 gi|529077789|ref|YP_008376792.1| - 0.0075 16.4 0.1 0.039 14.1 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4350) CbiX PF01903.12 gi|529077790|ref|YP_008376793.1| - 3.8e-35 120.1 0.0 3.1e-17 62.5 0.0 2.3 2 0 0 2 2 2 2 CbiX CbiK PF06180.6 gi|529077790|ref|YP_008376793.1| - 1.9e-06 27.1 0.0 0.00061 18.9 0.0 2.1 2 0 0 2 2 2 2 Cobalt chelatase (CbiK) Ferrochelatase PF00762.14 gi|529077790|ref|YP_008376793.1| - 0.0023 16.9 0.0 0.0045 16.0 0.0 1.4 1 1 0 1 1 1 1 Ferrochelatase BssS PF13991.1 gi|529077791|ref|YP_008376794.1| - 0.048 13.3 0.1 0.069 12.8 0.0 1.3 1 0 0 1 1 1 0 BssS protein family NIR_SIR PF01077.17 gi|529077792|ref|YP_008376795.1| - 7.7e-39 132.5 0.0 2.7e-26 91.8 0.0 2.3 2 0 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|529077792|ref|YP_008376795.1| - 7.7e-35 118.3 0.2 2e-18 65.7 0.0 3.3 2 1 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain NAD_binding_7 PF13241.1 gi|529077796|ref|YP_008376799.1| - 2.4e-21 75.9 0.0 5.2e-21 74.8 0.0 1.6 2 0 0 2 2 2 1 Putative NAD(P)-binding CysG_dimeriser PF10414.4 gi|529077796|ref|YP_008376799.1| - 0.00012 21.4 2.2 0.00012 21.4 1.5 2.3 3 0 0 3 3 3 1 Sirohaem synthase dimerisation region RmlD_sub_bind PF04321.12 gi|529077796|ref|YP_008376799.1| - 0.04 12.7 0.1 0.067 12.0 0.1 1.3 1 0 0 1 1 1 0 RmlD substrate binding domain Hydrolase PF00702.21 gi|529077797|ref|YP_008376800.1| - 1.2e-54 185.9 8.4 1.2e-54 185.9 5.8 1.7 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase E1-E2_ATPase PF00122.15 gi|529077797|ref|YP_008376800.1| - 1.5e-50 171.3 0.1 3.5e-50 170.1 0.1 1.6 1 0 0 1 1 1 1 E1-E2 ATPase HMA PF00403.21 gi|529077797|ref|YP_008376800.1| - 3.5e-25 87.9 0.0 1.8e-12 47.1 0.0 3.1 2 0 0 2 2 2 2 Heavy-metal-associated domain HAD PF12710.2 gi|529077797|ref|YP_008376800.1| - 1.4e-19 71.0 0.0 6.4e-19 68.8 0.0 2.2 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|529077797|ref|YP_008376800.1| - 1.2e-07 31.6 1.3 0.0011 18.5 0.4 2.4 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|529077797|ref|YP_008376800.1| - 0.00026 20.8 0.6 0.002 17.9 0.0 2.9 4 0 0 4 4 4 1 Haloacid dehalogenase-like hydrolase HTH_AsnC-type PF13404.1 gi|529077798|ref|YP_008376801.1| - 8.2e-15 54.0 0.2 8.2e-15 54.0 0.1 2.5 3 0 0 3 3 3 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|529077798|ref|YP_008376801.1| - 9.7e-14 50.4 0.0 2.1e-13 49.4 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|529077798|ref|YP_008376801.1| - 1.7e-06 27.6 0.0 3.3e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|529077798|ref|YP_008376801.1| - 1.4e-05 24.6 0.1 2.3e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|529077798|ref|YP_008376801.1| - 7.8e-05 22.2 0.0 0.00011 21.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family YHS PF04945.8 gi|529077798|ref|YP_008376801.1| - 0.00017 21.3 0.3 0.00029 20.6 0.2 1.3 1 0 0 1 1 1 1 YHS domain Arc_trans_TRASH PF08394.5 gi|529077798|ref|YP_008376801.1| - 0.00019 21.5 2.3 0.00027 21.0 1.6 1.2 1 0 0 1 1 1 1 Archaeal TRASH domain MarR PF01047.17 gi|529077798|ref|YP_008376801.1| - 0.00027 20.5 0.0 0.0004 20.0 0.0 1.2 1 0 0 1 1 1 1 MarR family zf-FCS PF06467.9 gi|529077798|ref|YP_008376801.1| - 0.0032 17.0 1.7 0.0048 16.5 0.7 1.6 2 0 0 2 2 2 1 MYM-type Zinc finger with FCS sequence motif HTH_IclR PF09339.5 gi|529077798|ref|YP_008376801.1| - 0.0049 16.4 0.0 0.0087 15.6 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|529077798|ref|YP_008376801.1| - 0.012 15.3 0.0 0.02 14.5 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|529077798|ref|YP_008376801.1| - 0.019 15.0 0.0 0.031 14.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain ATPase-cat_bd PF12156.3 gi|529077798|ref|YP_008376801.1| - 0.027 14.9 1.4 0.05 14.1 0.9 1.4 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase HTH_27 PF13463.1 gi|529077798|ref|YP_008376801.1| - 0.038 14.2 0.0 0.067 13.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain LIM PF00412.17 gi|529077798|ref|YP_008376801.1| - 0.054 13.5 0.8 0.1 12.6 0.5 1.5 1 0 0 1 1 1 0 LIM domain RHH_1 PF01402.16 gi|529077798|ref|YP_008376801.1| - 0.16 11.8 0.5 21 5.2 0.0 2.4 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family DUF3330 PF11809.3 gi|529077798|ref|YP_008376801.1| - 1.5 8.7 4.7 4.6 7.1 2.4 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF3330) HMA PF00403.21 gi|529077799|ref|YP_008376802.1| - 1.9e-18 66.3 0.3 2.1e-18 66.2 0.2 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain NAD_binding_7 PF13241.1 gi|529077799|ref|YP_008376802.1| - 0.018 15.2 0.1 0.02 15.1 0.1 1.1 1 0 0 1 1 1 0 Putative NAD(P)-binding DUF2271 PF10029.4 gi|529077799|ref|YP_008376802.1| - 0.028 13.9 0.0 0.032 13.7 0.0 1.1 1 0 0 1 1 1 0 Predicted periplasmic protein (DUF2271) DUF2997 PF11211.3 gi|529077799|ref|YP_008376802.1| - 0.25 10.7 1.6 0.37 10.1 1.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2997) DUF2800 PF10926.3 gi|529077800|ref|YP_008376803.1| - 1.6e-05 24.2 0.0 2.6e-05 23.5 0.0 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF2800) DivIC PF04977.10 gi|529077800|ref|YP_008376803.1| - 0.064 12.7 0.3 0.34 10.4 0.1 2.2 2 0 0 2 2 2 0 Septum formation initiator DUF563 PF04577.9 gi|529077800|ref|YP_008376803.1| - 0.16 11.8 0.0 0.27 11.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF563) DUF1998 PF09369.5 gi|529077801|ref|YP_008376804.1| - 9.3e-17 61.3 0.1 1.8e-16 60.4 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) SWIM PF04434.12 gi|529077802|ref|YP_008376805.1| - 1.8e-06 27.2 0.1 3.5e-06 26.3 0.1 1.4 1 0 0 1 1 1 1 SWIM zinc finger DUF1436 PF07262.6 gi|529077802|ref|YP_008376805.1| - 0.014 14.8 0.0 0.026 13.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1436) HTH_16 PF12645.2 gi|529077803|ref|YP_008376806.1| - 0.045 13.6 0.1 0.1 12.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Plasmid_stabil PF05016.9 gi|529077804|ref|YP_008376807.1| - 0.28 11.5 3.3 8.9 6.7 0.7 2.7 2 1 0 2 2 2 0 Plasmid stabilisation system protein DUF3141 PF11339.3 gi|529077805|ref|YP_008376808.1| - 0.0068 14.7 0.0 0.0093 14.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3141) PRiA4_ORF3 PF07929.6 gi|529077806|ref|YP_008376809.1| - 0.0046 16.4 0.0 0.0068 15.8 0.0 1.2 1 0 0 1 1 1 1 Plasmid pRiA4b ORF-3-like protein Calci_bind_CcbP PF11535.3 gi|529077807|ref|YP_008376810.1| - 5.6e-21 74.7 0.0 6.1e-21 74.6 0.0 1.0 1 0 0 1 1 1 1 Calcium binding DUF790 PF05626.6 gi|529077808|ref|YP_008376811.1| - 8.4e-128 426.0 0.0 9.5e-128 425.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF790) ResIII PF04851.10 gi|529077809|ref|YP_008376812.1| - 1e-20 74.3 0.0 6.1e-20 71.8 0.0 2.2 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|529077809|ref|YP_008376812.1| - 6.4e-19 67.5 0.1 6.4e-19 67.5 0.0 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|529077809|ref|YP_008376812.1| - 9.8e-09 34.9 0.0 2.6e-08 33.5 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_22 PF13401.1 gi|529077809|ref|YP_008376812.1| - 0.014 15.5 0.0 0.057 13.5 0.0 2.0 2 1 1 3 3 3 0 AAA domain SWIM PF04434.12 gi|529077810|ref|YP_008376813.1| - 1.4e-06 27.6 0.5 3.1e-06 26.5 0.3 1.6 1 0 0 1 1 1 1 SWIM zinc finger TPR_16 PF13432.1 gi|529077810|ref|YP_008376813.1| - 0.049 14.3 2.9 7 7.4 0.3 4.3 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_14 PF13428.1 gi|529077810|ref|YP_008376813.1| - 0.25 12.0 7.0 2.3 9.1 0.0 4.6 5 1 0 5 5 5 0 Tetratricopeptide repeat DUF3417 PF11897.3 gi|529077810|ref|YP_008376813.1| - 0.32 10.9 3.8 0.98 9.3 0.0 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3417) DUF488 PF04343.8 gi|529077810|ref|YP_008376813.1| - 0.42 11.0 0.0 0.42 11.0 0.0 2.9 3 1 1 4 4 4 0 Protein of unknown function, DUF488 ERCC4 PF02732.10 gi|529077811|ref|YP_008376814.1| - 2.6e-06 27.2 0.0 2.9e-06 27.0 0.0 1.1 1 0 0 1 1 1 1 ERCC4 domain MC1 PF05854.6 gi|529077816|ref|YP_008376819.1| - 3.5e-28 97.4 0.5 3.9e-28 97.2 0.4 1.0 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 SymE_toxin PF08845.5 gi|529077817|ref|YP_008376820.1| - 0.0046 16.7 0.0 0.005 16.6 0.0 1.1 1 0 0 1 1 1 1 Toxin SymE, type I toxin-antitoxin system Antitoxin-MazE PF04014.13 gi|529077817|ref|YP_008376820.1| - 0.045 13.4 0.1 0.067 12.9 0.1 1.3 1 0 0 1 1 1 0 Antidote-toxin recognition MazE DHO_dh PF01180.16 gi|529077818|ref|YP_008376821.1| - 1.5e-80 270.3 0.0 1.8e-80 270.0 0.0 1.1 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase NMO PF03060.10 gi|529077818|ref|YP_008376821.1| - 0.00092 18.4 0.3 0.0018 17.4 0.2 1.4 1 0 0 1 1 1 1 Nitronate monooxygenase DUF840 PF05801.6 gi|529077818|ref|YP_008376821.1| - 0.032 14.3 0.0 0.09 12.9 0.0 1.7 1 0 0 1 1 1 0 Lagovirus protein of unknown function (DUF840) B5 PF03484.10 gi|529077820|ref|YP_008376823.1| - 2.7e-17 62.3 0.2 2.2e-15 56.2 0.0 2.7 2 0 0 2 2 2 1 tRNA synthetase B5 domain B3_4 PF03483.12 gi|529077820|ref|YP_008376823.1| - 4.6e-11 42.4 0.0 7.4e-11 41.8 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain tRNA-synt_2d PF01409.15 gi|529077820|ref|YP_008376823.1| - 0.028 13.6 0.0 0.048 12.8 0.0 1.3 1 0 0 1 1 1 0 tRNA synthetases class II core domain (F) tRNA-synt_2d PF01409.15 gi|529077821|ref|YP_008376824.1| - 1.4e-74 250.3 0.0 1.9e-74 249.9 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) HTH_27 PF13463.1 gi|529077821|ref|YP_008376824.1| - 9.1e-05 22.7 2.6 0.12 12.7 0.2 2.5 2 0 0 2 2 2 2 Winged helix DNA-binding domain tRNA-synt_2 PF00152.15 gi|529077821|ref|YP_008376824.1| - 9.8e-05 21.2 2.0 0.15 10.8 0.1 2.3 2 0 0 2 2 2 2 tRNA synthetases class II (D, K and N) MarR_2 PF12802.2 gi|529077821|ref|YP_008376824.1| - 9.8e-05 21.9 1.6 0.00085 18.9 0.2 2.7 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|529077821|ref|YP_008376824.1| - 0.0059 16.2 0.4 0.32 10.7 0.0 2.5 2 0 0 2 2 2 1 MarR family TrmB PF01978.14 gi|529077821|ref|YP_008376824.1| - 0.042 13.5 0.1 6 6.6 0.0 2.9 2 1 1 3 3 3 0 Sugar-specific transcriptional regulator TrmB GntR PF00392.16 gi|529077821|ref|YP_008376824.1| - 3.2 7.2 5.9 1.3 8.4 0.4 2.8 3 0 0 3 3 3 0 Bacterial regulatory proteins, gntR family MatE PF01554.13 gi|529077822|ref|YP_008376825.1| - 1.8e-46 157.7 28.9 2.5e-26 92.2 4.8 2.7 2 1 1 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|529077822|ref|YP_008376825.1| - 6.3e-10 39.0 9.5 6.3e-10 39.0 6.6 4.6 4 1 1 5 5 5 3 Polysaccharide biosynthesis C-terminal domain MVIN PF03023.9 gi|529077822|ref|YP_008376825.1| - 8.3e-06 24.4 2.8 8.3e-06 24.4 2.0 2.1 2 0 0 2 2 2 2 MviN-like protein tRNA-synt_1b PF00579.20 gi|529077823|ref|YP_008376826.1| - 1.5e-40 139.1 0.0 1.2e-23 83.7 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) tRNA_int_endo PF01974.12 gi|529077824|ref|YP_008376827.1| - 2.5e-38 129.7 0.0 5.7e-25 86.9 0.0 2.4 2 1 0 2 2 2 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|529077824|ref|YP_008376827.1| - 8.6e-29 98.8 0.1 6.6e-14 51.2 0.0 2.5 2 0 0 2 2 2 2 tRNA intron endonuclease, N-terminal domain zf-C4_Topoisom PF01396.14 gi|529077825|ref|YP_008376828.1| - 2e-07 30.3 12.0 3.8e-06 26.2 0.4 3.5 3 0 0 3 3 3 2 Topoisomerase DNA binding C4 zinc finger DUF91 PF01939.11 gi|529077825|ref|YP_008376828.1| - 3.7e-07 29.5 0.0 4.9e-07 29.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF91 Prok-RING_1 PF14446.1 gi|529077825|ref|YP_008376828.1| - 0.0046 16.6 1.2 0.0046 16.6 0.8 3.4 4 0 0 4 4 3 1 Prokaryotic RING finger family 1 zinc_ribbon_2 PF13240.1 gi|529077825|ref|YP_008376828.1| - 0.045 13.2 1.5 0.77 9.3 0.1 2.7 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|529077825|ref|YP_008376828.1| - 0.088 12.5 1.3 32 4.3 0.0 4.1 4 0 0 4 4 4 0 zinc-ribbon domain zinc-ribbons_6 PF07191.7 gi|529077825|ref|YP_008376828.1| - 0.11 12.2 7.8 0.2 11.4 0.7 2.5 2 0 0 2 2 2 0 zinc-ribbons DUF1272 PF06906.6 gi|529077825|ref|YP_008376828.1| - 0.13 12.1 8.5 0.1 12.4 1.0 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF1272) DZR PF12773.2 gi|529077825|ref|YP_008376828.1| - 0.14 11.9 0.3 0.14 11.9 0.2 3.0 3 1 0 3 3 3 0 Double zinc ribbon zinc_ribbon_5 PF13719.1 gi|529077825|ref|YP_008376828.1| - 0.26 10.9 2.9 41 3.8 0.0 4.1 4 0 0 4 4 4 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|529077825|ref|YP_008376828.1| - 0.48 10.1 3.2 11 5.7 0.3 2.6 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|529077825|ref|YP_008376828.1| - 0.66 9.2 7.1 3.5 6.9 1.5 3.2 2 1 0 2 2 2 0 zinc-ribbon domain Auto_anti-p27 PF06677.7 gi|529077825|ref|YP_008376828.1| - 0.69 9.7 15.1 0.71 9.6 0.6 4.3 4 1 0 4 4 4 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn-ribbon_8 PF09723.5 gi|529077825|ref|YP_008376828.1| - 0.78 9.7 8.2 2.3 8.2 0.1 3.3 2 1 1 3 3 3 0 Zinc ribbon domain HypA PF01155.14 gi|529077825|ref|YP_008376828.1| - 1.7 8.3 6.1 6.3 6.5 1.3 3.0 1 1 2 3 3 3 0 Hydrogenase expression/synthesis hypA family zf-TFIIB PF13453.1 gi|529077825|ref|YP_008376828.1| - 7.6 5.8 9.8 2.4 7.4 0.3 3.2 3 1 1 4 4 4 0 Transcription factor zinc-finger SNase PF00565.12 gi|529077826|ref|YP_008376829.1| - 3.2e-15 56.2 0.0 4.7e-15 55.7 0.0 1.2 1 0 0 1 1 1 1 Staphylococcal nuclease homologue Tub_2 PF04525.7 gi|529077827|ref|YP_008376830.1| - 4.7e-05 22.8 0.1 0.023 14.0 0.0 2.9 2 1 0 3 3 3 2 Tubby C 2 HAD_2 PF13419.1 gi|529077828|ref|YP_008376831.1| - 2e-21 77.0 0.2 2.5e-21 76.6 0.2 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|529077828|ref|YP_008376831.1| - 6.7e-12 44.9 0.4 1.3e-11 44.0 0.2 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|529077828|ref|YP_008376831.1| - 8.3e-12 45.9 0.2 2.4e-10 41.2 0.1 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|529077828|ref|YP_008376831.1| - 0.00031 20.9 0.0 0.00041 20.5 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase NIF PF03031.13 gi|529077828|ref|YP_008376831.1| - 0.036 13.7 0.0 0.11 12.1 0.0 1.9 1 1 0 1 1 1 0 NLI interacting factor-like phosphatase Hydrolase_6 PF13344.1 gi|529077828|ref|YP_008376831.1| - 0.046 13.6 0.0 0.27 11.1 0.0 2.3 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase FAD_binding_4 PF01565.18 gi|529077828|ref|YP_008376831.1| - 0.12 11.8 0.0 0.2 11.1 0.0 1.5 1 0 0 1 1 1 0 FAD binding domain Cyclophil_like PF04126.8 gi|529077829|ref|YP_008376832.1| - 1.2e-26 92.6 0.0 1.3e-26 92.5 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin-like DEAD PF00270.24 gi|529077830|ref|YP_008376833.1| - 3.9e-27 94.7 0.0 3e-26 91.9 0.0 2.3 3 0 0 3 3 3 1 DEAD/DEAH box helicase Sec63 PF02889.11 gi|529077830|ref|YP_008376833.1| - 5.1e-20 71.9 0.0 7.3e-20 71.4 0.0 1.2 1 0 0 1 1 1 1 Sec63 Brl domain Helicase_C PF00271.26 gi|529077830|ref|YP_008376833.1| - 8.7e-09 35.1 0.0 2.9e-08 33.4 0.0 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|529077830|ref|YP_008376833.1| - 3.8e-08 33.3 0.0 8.2e-08 32.2 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_5 PF14520.1 gi|529077830|ref|YP_008376833.1| - 0.00016 21.8 3.8 0.00017 21.7 0.9 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix domain SNF2_N PF00176.18 gi|529077830|ref|YP_008376833.1| - 0.0091 14.8 0.0 0.015 14.1 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain T2SE PF00437.15 gi|529077830|ref|YP_008376833.1| - 0.013 14.4 0.0 0.032 13.1 0.0 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein DNA_pol_lambd_f PF10391.4 gi|529077830|ref|YP_008376833.1| - 0.03 13.8 0.0 0.095 12.2 0.0 1.8 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda TetR PF13972.1 gi|529077830|ref|YP_008376833.1| - 0.11 11.9 0.0 7 6.0 0.0 2.6 2 0 0 2 2 2 0 Bacterial transcriptional repressor Usp PF00582.21 gi|529077831|ref|YP_008376834.1| - 4.9e-62 208.2 9.9 1.1e-30 106.6 1.9 2.1 2 0 0 2 2 2 2 Universal stress protein family AP_endonuc_2 PF01261.19 gi|529077831|ref|YP_008376834.1| - 0.014 14.6 1.8 0.082 12.1 0.1 2.2 2 1 0 2 2 2 0 Xylose isomerase-like TIM barrel FR47 PF08445.5 gi|529077831|ref|YP_008376834.1| - 0.14 11.9 0.0 0.59 9.9 0.0 2.1 1 0 0 1 1 1 0 FR47-like protein Hjc PF01870.13 gi|529077832|ref|YP_008376835.1| - 2.8e-27 94.1 0.0 3.7e-27 93.7 0.0 1.2 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) DUF2157 PF09925.4 gi|529077833|ref|YP_008376836.1| - 0.24 11.0 1.6 0.31 10.6 1.1 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2157) CRPA PF05745.6 gi|529077833|ref|YP_008376836.1| - 0.28 10.9 1.4 0.33 10.7 1.0 1.1 1 0 0 1 1 1 0 Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA) DUF2892 PF11127.3 gi|529077833|ref|YP_008376836.1| - 5.2 6.9 7.1 9.6 6.1 4.9 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2892) DNA_primase_lrg PF04104.9 gi|529077834|ref|YP_008376837.1| - 1.1e-35 123.2 0.0 2.1e-35 122.2 0.0 1.4 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit EBP PF05241.7 gi|529077835|ref|YP_008376838.1| - 0.023 13.7 1.1 2.7 6.9 0.1 2.2 1 1 1 2 2 2 0 Emopamil binding protein Cation_ATPase_C PF00689.16 gi|529077835|ref|YP_008376838.1| - 0.043 13.3 2.5 0.11 11.9 0.3 2.0 2 0 0 2 2 2 0 Cation transporting ATPase, C-terminus DUF308 PF03729.8 gi|529077835|ref|YP_008376838.1| - 7.7 6.5 16.5 3.3 7.7 5.1 2.5 1 1 1 2 2 2 0 Short repeat of unknown function (DUF308) PCNA_N PF00705.13 gi|529077836|ref|YP_008376839.1| - 2.1e-10 40.2 0.1 4.2e-10 39.2 0.1 1.5 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|529077836|ref|YP_008376839.1| - 2.4e-06 27.4 0.0 1.9e-05 24.6 0.0 2.1 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain DNA_pol3_beta PF00712.14 gi|529077836|ref|YP_008376839.1| - 0.1 12.4 0.0 7.9 6.4 0.0 2.3 2 0 0 2 2 2 0 DNA polymerase III beta subunit, N-terminal domain Rad9 PF04139.8 gi|529077836|ref|YP_008376839.1| - 0.17 10.9 0.0 0.26 10.3 0.0 1.3 1 0 0 1 1 1 0 Rad9 Abhydrolase_6 PF12697.2 gi|529077837|ref|YP_008376840.1| - 2.8e-35 122.2 2.9 3.4e-35 121.9 2.0 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|529077837|ref|YP_008376840.1| - 6.7e-19 68.3 0.0 2e-17 63.5 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|529077837|ref|YP_008376840.1| - 1.2e-15 57.4 0.0 3.2e-15 56.1 0.0 1.6 1 1 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.3 gi|529077837|ref|YP_008376840.1| - 5.8e-06 26.0 0.0 1.1e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 Putative lysophospholipase Ndr PF03096.9 gi|529077837|ref|YP_008376840.1| - 0.014 13.8 0.0 0.019 13.4 0.0 1.2 1 0 0 1 1 1 0 Ndr family Peptidase_S9 PF00326.16 gi|529077837|ref|YP_008376840.1| - 0.076 12.2 0.0 0.25 10.5 0.0 1.9 1 1 1 2 2 2 0 Prolyl oligopeptidase family HATPase_c PF02518.21 gi|529077838|ref|YP_008376841.1| - 2.1e-18 66.0 0.0 4.3e-18 65.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|529077838|ref|YP_008376841.1| - 3.4e-14 52.5 2.4 1.9e-13 50.2 0.3 2.7 2 1 1 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|529077838|ref|YP_008376841.1| - 3.9e-05 23.6 0.4 0.00052 20.0 0.0 2.7 2 1 1 3 3 3 1 PAS fold HATPase_c_3 PF13589.1 gi|529077838|ref|YP_008376841.1| - 0.00035 20.2 0.0 0.00089 18.9 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|529077838|ref|YP_008376841.1| - 0.018 14.8 0.4 0.079 12.8 0.0 2.2 2 0 0 2 2 2 0 PAS domain HeLo PF14479.1 gi|529077838|ref|YP_008376841.1| - 0.024 14.3 0.2 0.048 13.4 0.1 1.4 1 0 0 1 1 1 0 Prion-inhibition and propagation DUF4010 PF13194.1 gi|529077839|ref|YP_008376842.1| - 0.025 13.8 0.0 0.031 13.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4010) DUF4307 PF14155.1 gi|529077839|ref|YP_008376842.1| - 0.029 14.1 0.1 0.054 13.2 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4307) DUF1508 PF07411.7 gi|529077841|ref|YP_008376844.1| - 1.4e-45 152.5 0.0 2.4e-10 39.6 0.0 11.4 12 0 0 12 12 12 9 Domain of unknown function (DUF1508) DDE_Tnp_IS240 PF13610.1 gi|529077841|ref|YP_008376844.1| - 2.7e-05 24.1 2.3 1.9 8.4 0.0 5.9 6 1 1 7 7 7 2 DDE domain SPOR PF05036.8 gi|529077841|ref|YP_008376844.1| - 0.012 15.7 2.6 22 5.2 0.1 4.7 5 0 0 5 5 5 0 Sporulation related domain Robl_LC7 PF03259.12 gi|529077841|ref|YP_008376844.1| - 0.014 14.9 1.0 3.2 7.3 0.0 4.1 5 0 0 5 5 5 0 Roadblock/LC7 domain Dodecin PF07311.7 gi|529077841|ref|YP_008376844.1| - 0.041 13.9 3.9 0.26 11.3 0.2 3.6 3 0 0 3 3 3 0 Dodecin DUF2231 PF09990.4 gi|529077841|ref|YP_008376844.1| - 8.7 6.7 8.4 1.2 9.5 2.6 2.0 2 0 0 2 2 2 0 Predicted membrane protein (DUF2231) tRNA-synt_1 PF00133.17 gi|529077842|ref|YP_008376845.1| - 6.1e-72 242.4 3.3 1.2e-25 89.6 0.0 4.9 1 1 3 4 4 4 4 tRNA synthetases class I (I, L, M and V) tRNA-synt_1_2 PF13603.1 gi|529077842|ref|YP_008376845.1| - 1.2e-58 197.4 0.1 1.2e-58 197.4 0.0 1.6 2 0 0 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1g PF09334.6 gi|529077842|ref|YP_008376845.1| - 4.7e-35 120.9 0.0 3.1e-24 85.3 0.0 4.1 3 1 0 3 3 3 2 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|529077842|ref|YP_008376845.1| - 1.1e-13 51.1 0.0 2.3e-13 50.1 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1f PF01921.13 gi|529077842|ref|YP_008376845.1| - 0.0063 15.2 0.0 0.61 8.6 0.0 2.4 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|529077842|ref|YP_008376845.1| - 0.0088 14.8 0.1 1.5 7.5 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (R) DZR PF12773.2 gi|529077842|ref|YP_008376845.1| - 0.032 14.0 3.7 1.4 8.7 0.4 2.5 2 1 0 2 2 2 0 Double zinc ribbon DNA_ligase_ZBD PF03119.11 gi|529077842|ref|YP_008376845.1| - 0.033 13.9 8.2 0.24 11.1 0.0 2.8 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain tRNA-synt_1e PF01406.14 gi|529077842|ref|YP_008376845.1| - 0.048 12.7 0.0 2.5 7.1 0.0 2.3 2 0 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain IBR PF01485.16 gi|529077842|ref|YP_008376845.1| - 0.075 12.9 2.2 5 7.0 0.6 2.7 2 1 0 2 2 2 0 IBR domain zf-C4_Topoisom PF01396.14 gi|529077842|ref|YP_008376845.1| - 0.14 11.6 0.1 0.56 9.7 0.0 2.0 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger TF_Zn_Ribbon PF08271.7 gi|529077842|ref|YP_008376845.1| - 9.7 5.6 11.4 4.8 6.5 0.2 3.5 3 0 0 3 3 3 0 TFIIB zinc-binding Spore_YtfJ PF09579.5 gi|529077843|ref|YP_008376846.1| - 1.7e-09 37.3 6.5 2e-09 37.1 4.5 1.1 1 0 0 1 1 1 1 Sporulation protein YtfJ (Spore_YtfJ) RHH_1 PF01402.16 gi|529077845|ref|YP_008376848.1| - 8.5e-06 25.4 1.8 2e-05 24.2 0.1 2.2 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family DUF3846 PF12957.2 gi|529077845|ref|YP_008376848.1| - 0.013 15.2 0.1 0.25 11.1 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3846) RasGAP_C PF03836.10 gi|529077845|ref|YP_008376848.1| - 0.095 12.3 0.0 0.17 11.5 0.0 1.5 1 0 0 1 1 1 0 RasGAP C-terminus ABM PF03992.11 gi|529077845|ref|YP_008376848.1| - 0.46 10.5 2.1 2 8.4 0.2 2.1 2 0 0 2 2 2 0 Antibiotic biosynthesis monooxygenase TMEM171 PF15471.1 gi|529077846|ref|YP_008376849.1| - 0.071 11.8 0.2 0.093 11.5 0.1 1.1 1 0 0 1 1 1 0 Transmembrane protein family 171 MSP PF01716.13 gi|529077846|ref|YP_008376849.1| - 0.078 12.0 0.0 0.12 11.4 0.0 1.2 1 0 0 1 1 1 0 Manganese-stabilising protein / photosystem II polypeptide tRNA_anti-codon PF01336.20 gi|529077847|ref|YP_008376850.1| - 0.016 15.0 0.1 0.15 11.9 0.0 2.4 2 0 0 2 2 2 0 OB-fold nucleic acid binding domain DUF1397 PF07165.6 gi|529077848|ref|YP_008376851.1| - 0.033 13.3 0.0 0.034 13.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1397) ClpS PF02617.12 gi|529077848|ref|YP_008376851.1| - 0.065 12.9 0.3 0.12 12.1 0.0 1.5 2 0 0 2 2 2 0 ATP-dependent Clp protease adaptor protein ClpS ABC_tran PF00005.22 gi|529077849|ref|YP_008376852.1| - 1.7e-25 89.9 0.0 2.1e-25 89.6 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|529077849|ref|YP_008376852.1| - 1.4e-14 54.7 0.0 3.6e-09 36.9 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|529077849|ref|YP_008376852.1| - 0.0012 17.9 0.0 0.0084 15.2 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_13 PF13166.1 gi|529077849|ref|YP_008376852.1| - 0.017 13.5 0.0 0.5 8.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|529077849|ref|YP_008376852.1| - 0.021 14.7 0.0 0.068 13.0 0.0 1.8 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.1 gi|529077849|ref|YP_008376852.1| - 0.058 13.7 0.1 0.093 13.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|529077849|ref|YP_008376852.1| - 0.063 13.4 0.1 2.8 8.1 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|529077849|ref|YP_008376852.1| - 0.071 13.0 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.1 gi|529077849|ref|YP_008376852.1| - 0.15 11.6 0.1 0.29 10.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain IncA PF04156.9 gi|529077851|ref|YP_008376854.1| - 0.0079 15.8 4.2 0.0093 15.5 2.9 1.0 1 0 0 1 1 1 1 IncA protein DUF805 PF05656.9 gi|529077851|ref|YP_008376854.1| - 0.81 9.5 4.1 1 9.1 2.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF805) DUF1469 PF07332.6 gi|529077851|ref|YP_008376854.1| - 1.6 8.4 5.5 1.9 8.2 3.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) MARVEL PF01284.18 gi|529077851|ref|YP_008376854.1| - 5.7 6.7 8.4 7 6.4 5.8 1.1 1 0 0 1 1 1 0 Membrane-associating domain adh_short_C2 PF13561.1 gi|529077852|ref|YP_008376855.1| - 2.9e-29 102.5 0.0 3.4e-29 102.2 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|529077852|ref|YP_008376855.1| - 4.2e-21 75.5 2.3 5.8e-21 75.1 1.6 1.3 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|529077852|ref|YP_008376855.1| - 3.7e-09 36.4 0.2 5.6e-09 35.9 0.2 1.2 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|529077852|ref|YP_008376855.1| - 0.00015 21.8 0.8 0.00022 21.2 0.6 1.3 1 0 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|529077852|ref|YP_008376855.1| - 0.0035 16.7 0.0 0.0056 16.1 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Shikimate_DH PF01488.15 gi|529077852|ref|YP_008376855.1| - 0.13 12.3 0.1 4.8 7.2 0.0 2.3 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase Nitro_FeMo-Co PF02579.12 gi|529077852|ref|YP_008376855.1| - 0.16 12.0 0.4 6.4 6.9 0.1 2.6 2 1 1 3 3 3 0 Dinitrogenase iron-molybdenum cofactor TRAM PF01938.15 gi|529077853|ref|YP_008376856.1| - 6e-10 38.7 0.4 8.2e-10 38.3 0.3 1.2 1 0 0 1 1 1 1 TRAM domain LKAAEAR PF15478.1 gi|529077853|ref|YP_008376856.1| - 0.05 13.8 0.1 0.076 13.2 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function with LKAAEAR motif Sigma70_ner PF04546.8 gi|529077853|ref|YP_008376856.1| - 0.092 12.3 5.0 0.11 12.1 3.4 1.1 1 0 0 1 1 1 0 Sigma-70, non-essential region CDC45 PF02724.9 gi|529077853|ref|YP_008376856.1| - 0.18 9.8 3.5 0.19 9.6 2.4 1.0 1 0 0 1 1 1 0 CDC45-like protein Nop14 PF04147.7 gi|529077853|ref|YP_008376856.1| - 0.93 7.3 8.4 1 7.2 5.8 1.0 1 0 0 1 1 1 0 Nop14-like family Nucleoplasmin PF03066.10 gi|529077853|ref|YP_008376856.1| - 0.94 8.9 6.6 1.1 8.7 4.5 1.3 1 0 0 1 1 1 0 Nucleoplasmin TRAP_alpha PF03896.11 gi|529077853|ref|YP_008376856.1| - 2.1 7.2 4.8 2.8 6.8 3.3 1.2 1 0 0 1 1 1 0 Translocon-associated protein (TRAP), alpha subunit DUF2457 PF10446.4 gi|529077853|ref|YP_008376856.1| - 6.1 5.4 14.0 7.7 5.1 9.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) DUF4265 PF14085.1 gi|529077854|ref|YP_008376857.1| - 0.00046 19.9 0.0 0.00054 19.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4265) DUF2560 PF10834.3 gi|529077855|ref|YP_008376858.1| - 0.19 11.7 1.1 0.66 9.9 0.8 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF2560) PolC_DP2 PF03833.8 gi|529077856|ref|YP_008376859.1| - 0 1340.6 0.2 0 1340.0 0.1 1.2 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 DZR PF12773.2 gi|529077856|ref|YP_008376859.1| - 0.4 10.5 18.8 7.1 6.5 0.3 3.0 2 1 0 2 2 2 0 Double zinc ribbon HypA PF01155.14 gi|529077856|ref|YP_008376859.1| - 4.5 7.0 18.0 1.1 8.9 1.4 3.5 2 1 1 3 3 3 0 Hydrogenase expression/synthesis hypA family zinc-ribbons_6 PF07191.7 gi|529077856|ref|YP_008376859.1| - 6.2 6.6 14.8 1e+02 2.7 0.1 3.1 2 1 0 2 2 2 0 zinc-ribbons DUF296 PF03479.10 gi|529077857|ref|YP_008376860.1| - 6.3e-24 83.8 0.0 7.1e-24 83.7 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF296) DUF2072 PF09845.4 gi|529077859|ref|YP_008376862.1| - 2e-30 105.3 0.2 2.4e-14 53.3 0.0 2.2 2 0 0 2 2 2 2 Zn-ribbon containing protein (DUF2072) DUF1451 PF07295.6 gi|529077859|ref|YP_008376862.1| - 0.011 15.5 1.3 0.051 13.3 0.6 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1451) TF_Zn_Ribbon PF08271.7 gi|529077859|ref|YP_008376862.1| - 0.012 14.9 2.4 0.71 9.2 0.1 2.5 2 0 0 2 2 2 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|529077859|ref|YP_008376862.1| - 0.029 14.3 1.8 0.074 13.0 1.3 1.6 1 0 0 1 1 1 0 Zinc ribbon domain HypA PF01155.14 gi|529077859|ref|YP_008376862.1| - 0.084 12.5 0.6 0.13 11.9 0.4 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zinc_ribbon_2 PF13240.1 gi|529077859|ref|YP_008376862.1| - 0.31 10.5 3.7 0.64 9.5 2.6 1.5 1 0 0 1 1 1 0 zinc-ribbon domain DUF2073 PF09846.4 gi|529077860|ref|YP_008376863.1| - 2e-48 162.3 1.6 2.5e-48 162.0 1.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) MMR_HSR1 PF01926.18 gi|529077861|ref|YP_008376864.1| - 8.3e-15 54.7 0.0 1.1e-14 54.3 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|529077861|ref|YP_008376864.1| - 2.4e-12 46.7 0.0 6.2e-06 25.7 0.0 2.8 2 2 0 2 2 2 2 Elongation factor Tu GTP binding domain Arf PF00025.16 gi|529077861|ref|YP_008376864.1| - 5.8e-08 32.1 0.0 6.2e-05 22.3 0.0 2.7 2 1 1 3 3 3 2 ADP-ribosylation factor family AAA_17 PF13207.1 gi|529077861|ref|YP_008376864.1| - 1.9e-05 25.4 0.1 3.5e-05 24.6 0.1 1.7 1 1 0 1 1 1 1 AAA domain FeoB_N PF02421.13 gi|529077861|ref|YP_008376864.1| - 4.6e-05 22.7 0.1 0.00044 19.5 0.1 2.3 1 1 0 1 1 1 1 Ferrous iron transport protein B Miro PF08477.8 gi|529077861|ref|YP_008376864.1| - 0.00015 22.2 0.0 0.00038 20.9 0.0 1.7 1 1 0 1 1 1 1 Miro-like protein AAA_18 PF13238.1 gi|529077861|ref|YP_008376864.1| - 0.0003 21.0 0.0 0.00054 20.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|529077861|ref|YP_008376864.1| - 0.00058 20.0 0.0 0.0012 19.0 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|529077861|ref|YP_008376864.1| - 0.00081 19.3 0.2 0.035 14.0 0.0 2.2 1 1 1 2 2 2 1 AAA domain Septin PF00735.13 gi|529077861|ref|YP_008376864.1| - 0.00097 18.2 0.0 0.0016 17.4 0.0 1.3 1 0 0 1 1 1 1 Septin SRPRB PF09439.5 gi|529077861|ref|YP_008376864.1| - 0.0011 18.1 0.0 0.17 11.0 0.0 2.2 2 0 0 2 2 2 1 Signal recognition particle receptor beta subunit AAA_16 PF13191.1 gi|529077861|ref|YP_008376864.1| - 0.0015 18.5 0.0 0.0024 17.8 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|529077861|ref|YP_008376864.1| - 0.0035 17.5 0.0 0.021 15.0 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Dynamin_N PF00350.18 gi|529077861|ref|YP_008376864.1| - 0.0041 16.9 0.0 0.29 10.9 0.0 2.3 1 1 0 1 1 1 1 Dynamin family AAA_19 PF13245.1 gi|529077861|ref|YP_008376864.1| - 0.0045 16.7 0.2 0.03 14.0 0.0 2.2 2 0 0 2 2 2 1 Part of AAA domain NB-ARC PF00931.17 gi|529077861|ref|YP_008376864.1| - 0.0061 15.4 0.0 0.015 14.1 0.0 1.6 2 0 0 2 2 2 1 NB-ARC domain Zeta_toxin PF06414.7 gi|529077861|ref|YP_008376864.1| - 0.0086 15.1 0.0 0.023 13.7 0.0 1.7 2 0 0 2 2 2 1 Zeta toxin RNA_helicase PF00910.17 gi|529077861|ref|YP_008376864.1| - 0.012 15.7 0.0 0.024 14.7 0.0 1.5 1 0 0 1 1 1 0 RNA helicase cobW PF02492.14 gi|529077861|ref|YP_008376864.1| - 0.016 14.6 0.0 3.3 7.1 0.0 2.3 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain ABC_tran PF00005.22 gi|529077861|ref|YP_008376864.1| - 0.048 13.9 0.0 0.09 13.0 0.0 1.4 1 1 0 1 1 1 0 ABC transporter Arch_ATPase PF01637.13 gi|529077861|ref|YP_008376864.1| - 0.052 13.2 0.0 0.098 12.3 0.0 1.7 1 1 1 2 2 2 0 Archaeal ATPase NACHT PF05729.7 gi|529077861|ref|YP_008376864.1| - 0.057 13.0 0.0 0.095 12.3 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_14 PF13173.1 gi|529077861|ref|YP_008376864.1| - 0.057 13.3 0.0 0.077 12.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain RuvB_N PF05496.7 gi|529077861|ref|YP_008376864.1| - 0.062 12.3 0.0 0.1 11.5 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus MMR_HSR1_C PF08438.5 gi|529077861|ref|YP_008376864.1| - 0.065 13.4 0.1 0.19 11.9 0.0 1.7 2 0 0 2 2 2 0 GTPase of unknown function C-terminal AAA_25 PF13481.1 gi|529077861|ref|YP_008376864.1| - 0.067 12.5 0.0 0.18 11.2 0.0 1.9 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|529077861|ref|YP_008376864.1| - 0.075 12.7 0.0 0.26 10.9 0.0 1.9 1 1 1 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B ArgK PF03308.11 gi|529077861|ref|YP_008376864.1| - 0.08 11.7 0.1 0.98 8.1 0.0 2.4 2 1 0 2 2 2 0 ArgK protein AAA_24 PF13479.1 gi|529077861|ref|YP_008376864.1| - 0.12 11.8 0.3 0.21 11.1 0.2 1.7 1 1 0 1 1 1 0 AAA domain Parvo_NS1 PF01057.12 gi|529077861|ref|YP_008376864.1| - 0.14 11.0 0.0 0.22 10.3 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Cdc6_C PF09079.6 gi|529077862|ref|YP_008376865.1| - 2.1e-28 97.8 0.1 5.6e-28 96.5 0.1 1.8 1 0 0 1 1 1 1 CDC6, C terminal AAA_16 PF13191.1 gi|529077862|ref|YP_008376865.1| - 7.2e-12 45.6 4.3 7.5e-11 42.3 0.0 2.7 3 0 0 3 3 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|529077862|ref|YP_008376865.1| - 8e-10 38.9 0.1 8.1e-09 35.7 0.1 2.3 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|529077862|ref|YP_008376865.1| - 3.8e-09 36.8 0.3 0.0022 18.1 0.0 2.5 1 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|529077862|ref|YP_008376865.1| - 0.00015 21.5 0.0 0.00033 20.4 0.0 1.5 1 0 0 1 1 1 1 Archaeal ATPase AAA_17 PF13207.1 gi|529077862|ref|YP_008376865.1| - 0.00035 21.3 0.0 0.0015 19.3 0.0 2.2 1 0 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|529077862|ref|YP_008376865.1| - 0.0012 17.8 0.0 0.002 17.0 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_2 PF07724.9 gi|529077862|ref|YP_008376865.1| - 0.0016 18.4 0.0 0.01 15.7 0.0 2.1 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) Sigma54_activat PF00158.21 gi|529077862|ref|YP_008376865.1| - 0.0016 17.8 0.0 0.0039 16.6 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_18 PF13238.1 gi|529077862|ref|YP_008376865.1| - 0.0018 18.5 0.4 0.013 15.8 0.1 2.4 1 1 1 2 2 2 1 AAA domain DUF815 PF05673.8 gi|529077862|ref|YP_008376865.1| - 0.0028 16.6 0.0 0.0075 15.2 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF815) RuvB_N PF05496.7 gi|529077862|ref|YP_008376865.1| - 0.0064 15.5 0.0 0.016 14.2 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus MutS_III PF05192.13 gi|529077862|ref|YP_008376865.1| - 0.015 15.1 0.5 5.1 6.8 0.2 2.3 2 0 0 2 2 2 0 MutS domain III ABC_tran PF00005.22 gi|529077862|ref|YP_008376865.1| - 0.02 15.1 0.0 0.057 13.7 0.0 1.9 1 1 0 1 1 1 0 ABC transporter DEAD PF00270.24 gi|529077862|ref|YP_008376865.1| - 0.021 14.3 2.1 0.23 10.9 0.3 2.8 2 1 0 2 2 2 0 DEAD/DEAH box helicase NB-ARC PF00931.17 gi|529077862|ref|YP_008376865.1| - 0.022 13.6 0.0 0.035 12.9 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_24 PF13479.1 gi|529077862|ref|YP_008376865.1| - 0.053 13.0 0.0 0.11 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|529077862|ref|YP_008376865.1| - 0.07 12.5 1.3 0.42 10.0 0.9 2.0 1 1 0 1 1 1 0 FtsK/SpoIIIE family Nnf1 PF03980.9 gi|529077862|ref|YP_008376865.1| - 5 7.1 9.6 24 4.9 0.4 4.2 5 0 0 5 5 5 0 Nnf1 Peptidase_S24 PF00717.18 gi|529077863|ref|YP_008376866.1| - 0.0016 18.0 0.1 0.0046 16.5 0.1 1.7 1 1 0 1 1 1 1 Peptidase S24-like DNA_pol_E_B PF04042.11 gi|529077864|ref|YP_008376867.1| - 1.7e-14 53.5 0.0 2.5e-14 53.0 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos_2 PF12850.2 gi|529077864|ref|YP_008376867.1| - 3.6e-12 46.3 3.3 1.3e-11 44.5 2.3 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|529077864|ref|YP_008376867.1| - 5.2e-07 29.2 3.7 1.9e-06 27.4 2.6 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase tRNA_anti-codon PF01336.20 gi|529077864|ref|YP_008376867.1| - 0.013 15.3 0.0 0.034 14.0 0.0 1.7 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain CoA_binding_2 PF13380.1 gi|529077864|ref|YP_008376867.1| - 0.092 12.9 0.0 0.24 11.5 0.0 1.7 1 0 0 1 1 1 0 CoA binding domain Cys_Met_Meta_PP PF01053.15 gi|529077865|ref|YP_008376868.1| - 1.7e-139 464.4 0.0 1.9e-139 464.2 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|529077865|ref|YP_008376868.1| - 3.4e-09 36.2 0.3 5.7e-09 35.4 0.2 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|529077865|ref|YP_008376868.1| - 5.1e-09 35.5 0.0 7.3e-09 35.0 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|529077865|ref|YP_008376868.1| - 1.8e-07 30.2 0.0 3.1e-07 29.4 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|529077865|ref|YP_008376868.1| - 0.001 18.2 0.0 0.0019 17.3 0.0 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase SLA_LP_auto_ag PF05889.8 gi|529077865|ref|YP_008376868.1| - 0.0081 14.6 0.0 0.013 14.0 0.0 1.2 1 0 0 1 1 1 1 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) TPP_enzyme_N PF02776.13 gi|529077865|ref|YP_008376868.1| - 0.0091 15.5 1.5 1.7 8.1 0.1 2.7 3 0 0 3 3 3 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Glyco_hydro_3 PF00933.16 gi|529077866|ref|YP_008376869.1| - 1.7e-79 266.8 0.0 2.3e-79 266.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.17 gi|529077866|ref|YP_008376869.1| - 5.7e-65 219.0 0.1 1.1e-64 218.1 0.1 1.5 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.1 gi|529077866|ref|YP_008376869.1| - 1.4e-22 79.3 0.3 4e-22 77.9 0.1 1.9 2 0 0 2 2 2 1 Fibronectin type III-like domain DUF4232 PF14016.1 gi|529077866|ref|YP_008376869.1| - 0.044 13.4 0.1 0.097 12.3 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF4232) TFIIE-A_C-term PF11521.3 gi|529077866|ref|YP_008376869.1| - 0.059 13.3 1.5 5.7 6.9 0.4 3.9 3 1 1 4 4 4 0 C-terminal general transcription factor TFIIE alpha CARDB PF07705.6 gi|529077866|ref|YP_008376869.1| - 0.082 12.9 0.0 0.34 10.9 0.0 2.0 2 0 0 2 2 2 0 CARDB eIF-1a PF01176.14 gi|529077867|ref|YP_008376870.1| - 5.3e-28 96.2 0.8 6.6e-28 95.9 0.5 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 RIO1 PF01163.17 gi|529077868|ref|YP_008376871.1| - 2.3e-58 196.6 0.1 8.4e-58 194.8 0.0 1.7 2 0 0 2 2 2 1 RIO1 family APH PF01636.18 gi|529077868|ref|YP_008376871.1| - 3.6e-08 33.4 0.2 1.7e-06 27.9 0.0 2.4 1 1 1 2 2 2 1 Phosphotransferase enzyme family Kdo PF06293.9 gi|529077868|ref|YP_008376871.1| - 8.7e-07 28.2 0.1 4.5e-06 25.8 0.1 2.0 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.20 gi|529077868|ref|YP_008376871.1| - 0.00053 19.2 0.0 0.00087 18.5 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain WaaY PF06176.6 gi|529077868|ref|YP_008376871.1| - 0.002 17.3 0.0 0.0032 16.7 0.0 1.3 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Glycolytic PF00274.14 gi|529077868|ref|YP_008376871.1| - 0.15 10.4 0.5 0.89 7.8 0.1 2.0 2 0 0 2 2 2 0 Fructose-bisphosphate aldolase class-I UPF0236 PF06782.6 gi|529077869|ref|YP_008376872.1| - 4.1e-07 28.7 0.1 3.2e-05 22.5 0.0 2.2 2 0 0 2 2 2 2 Uncharacterised protein family (UPF0236) Transposase_mut PF00872.13 gi|529077869|ref|YP_008376872.1| - 9.9e-05 21.0 1.5 0.024 13.2 0.1 2.5 2 1 0 2 2 2 2 Transposase, Mutator family NRDD PF13597.1 gi|529077872|ref|YP_008376875.1| - 4.6e-205 681.8 0.0 5.3e-205 681.6 0.0 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase ATP-cone PF03477.11 gi|529077872|ref|YP_008376875.1| - 2.3e-23 82.4 1.4 4.5e-23 81.5 0.2 2.1 2 0 0 2 2 2 1 ATP cone domain DUF3029 PF11230.3 gi|529077872|ref|YP_008376875.1| - 0.083 11.0 0.1 3.7 5.6 0.0 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF3029) Ribosomal_L32p PF01783.18 gi|529077872|ref|YP_008376875.1| - 0.44 10.7 1.6 0.84 9.8 1.1 1.4 1 0 0 1 1 1 0 Ribosomal L32p protein family Radical_SAM PF04055.16 gi|529077873|ref|YP_008376876.1| - 7.9e-21 74.9 0.0 1e-20 74.5 0.0 1.1 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|529077873|ref|YP_008376876.1| - 2.5e-13 50.0 0.0 3.6e-13 49.5 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|529077873|ref|YP_008376876.1| - 2.7e-12 46.9 0.0 3.7e-12 46.5 0.0 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Gmad1 PF10647.4 gi|529077875|ref|YP_008376878.1| - 0.00058 19.3 0.8 0.0012 18.3 0.5 1.6 1 1 0 1 1 1 1 Lipoprotein LpqB beta-propeller domain DUF2408 PF10303.4 gi|529077875|ref|YP_008376878.1| - 0.036 14.1 0.0 0.069 13.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2408) Vps5 PF09325.5 gi|529077875|ref|YP_008376878.1| - 1.4 8.1 4.7 3.7 6.7 0.2 2.4 2 1 1 3 3 3 0 Vps5 C terminal like Metallophos_2 PF12850.2 gi|529077876|ref|YP_008376879.1| - 1.8e-11 44.1 0.4 2.9e-11 43.4 0.3 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|529077876|ref|YP_008376879.1| - 1.5e-06 27.7 1.4 3.6e-06 26.4 0.9 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|529077876|ref|YP_008376879.1| - 0.082 12.0 0.2 0.67 9.0 0.0 2.1 1 1 1 2 2 2 0 Metallophosphoesterase, calcineurin superfamily SBP_bac_5 PF00496.17 gi|529077878|ref|YP_008376881.1| - 2.3e-68 230.7 1.6 3.7e-68 230.0 1.1 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.17 gi|529077879|ref|YP_008376882.1| - 1.3e-32 112.8 11.7 1.3e-32 112.8 8.1 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|529077880|ref|YP_008376883.1| - 1.3e-16 60.6 7.6 1.3e-16 60.6 5.3 2.4 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|529077880|ref|YP_008376883.1| - 5e-07 28.9 0.0 5e-07 28.9 0.0 3.6 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C DUF106 PF01956.11 gi|529077880|ref|YP_008376883.1| - 0.1 12.1 0.3 0.25 10.8 0.2 1.6 1 0 0 1 1 1 0 Integral membrane protein DUF106 ABC_tran PF00005.22 gi|529077881|ref|YP_008376884.1| - 1.8e-29 102.7 0.0 2.5e-29 102.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|529077881|ref|YP_008376884.1| - 1.7e-19 69.9 2.8 2.9e-19 69.1 1.5 1.8 2 0 0 2 2 2 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|529077881|ref|YP_008376884.1| - 6.2e-08 32.9 0.0 1.5e-05 25.0 0.0 2.1 1 1 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|529077881|ref|YP_008376884.1| - 4.7e-05 22.9 0.0 0.027 13.9 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain SMC_N PF02463.14 gi|529077881|ref|YP_008376884.1| - 0.0019 17.4 0.0 0.0035 16.6 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|529077881|ref|YP_008376884.1| - 0.0023 18.0 0.4 0.054 13.6 0.3 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|529077881|ref|YP_008376884.1| - 0.0066 16.4 0.9 0.016 15.2 0.6 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|529077881|ref|YP_008376884.1| - 0.016 14.6 0.2 0.032 13.7 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.24 gi|529077881|ref|YP_008376884.1| - 0.033 14.3 0.0 0.46 10.6 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AIG1 PF04548.11 gi|529077881|ref|YP_008376884.1| - 0.092 11.8 0.4 0.14 11.2 0.3 1.3 1 0 0 1 1 1 0 AIG1 family AAA_25 PF13481.1 gi|529077881|ref|YP_008376884.1| - 0.2 11.0 1.0 1 8.6 0.7 2.0 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|529077882|ref|YP_008376885.1| - 9.4e-35 119.8 0.0 1.4e-34 119.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|529077882|ref|YP_008376885.1| - 1e-13 51.3 0.3 2.1e-13 50.4 0.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|529077882|ref|YP_008376885.1| - 7.4e-08 32.6 0.1 5.3e-05 23.3 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|529077882|ref|YP_008376885.1| - 0.0042 17.0 6.6 0.076 12.9 1.1 2.5 2 1 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|529077882|ref|YP_008376885.1| - 0.0043 16.3 0.0 0.012 14.8 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|529077882|ref|YP_008376885.1| - 0.011 15.1 3.4 0.016 14.6 0.3 2.5 2 1 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|529077882|ref|YP_008376885.1| - 0.02 14.8 0.3 0.24 11.3 0.0 2.6 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit ATP-synt_ab PF00006.20 gi|529077882|ref|YP_008376885.1| - 0.028 13.9 0.0 0.028 13.9 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_22 PF13401.1 gi|529077882|ref|YP_008376885.1| - 0.035 14.2 2.3 0.24 11.5 1.0 2.5 2 1 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|529077882|ref|YP_008376885.1| - 0.084 12.0 0.1 0.15 11.2 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA PF00004.24 gi|529077882|ref|YP_008376885.1| - 0.11 12.7 0.0 0.31 11.2 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|529077882|ref|YP_008376885.1| - 0.12 12.0 0.9 2.3 7.9 0.2 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|529077882|ref|YP_008376885.1| - 0.14 12.5 0.0 0.39 11.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain PduV-EutP PF10662.4 gi|529077882|ref|YP_008376885.1| - 0.15 11.5 0.1 0.31 10.5 0.1 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation Inositol_P PF00459.20 gi|529077883|ref|YP_008376886.1| - 1.5e-52 178.6 1.9 1.8e-52 178.3 1.3 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family 2-ph_phosp PF04029.9 gi|529077884|ref|YP_008376887.1| - 5.1e-25 87.7 0.0 6.4e-25 87.4 0.0 1.1 1 0 0 1 1 1 1 2-phosphosulpholactate phosphatase Antitoxin-MazE PF04014.13 gi|529077885|ref|YP_008376888.1| - 2.4e-07 30.3 0.2 9.6e-07 28.4 0.0 2.1 2 0 0 2 2 2 1 Antidote-toxin recognition MazE Syntaxin-6_N PF09177.6 gi|529077885|ref|YP_008376888.1| - 0.42 11.0 2.5 6.5 7.2 0.6 3.0 2 1 0 2 2 2 0 Syntaxin 6, N-terminal PhoU PF01895.14 gi|529077886|ref|YP_008376889.1| - 6.5e-35 119.4 6.8 8.6e-19 67.7 0.3 2.1 2 0 0 2 2 2 2 PhoU domain ABC_tran PF00005.22 gi|529077887|ref|YP_008376890.1| - 5.5e-30 104.4 0.0 8.5e-30 103.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|529077887|ref|YP_008376890.1| - 8.4e-16 58.7 0.1 6.4e-09 36.1 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|529077887|ref|YP_008376890.1| - 6.1e-10 38.7 1.4 2.7e-08 33.3 1.0 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|529077887|ref|YP_008376890.1| - 2.4e-06 27.7 0.0 5.4e-06 26.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|529077887|ref|YP_008376890.1| - 5.6e-06 25.6 0.0 0.021 13.8 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|529077887|ref|YP_008376890.1| - 7.1e-05 23.2 0.3 0.00091 19.6 0.0 2.2 2 1 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|529077887|ref|YP_008376890.1| - 0.00057 19.1 0.0 0.0012 18.0 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|529077887|ref|YP_008376890.1| - 0.00073 19.0 0.0 0.0017 17.8 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|529077887|ref|YP_008376890.1| - 0.00091 19.2 3.5 0.011 15.7 2.4 2.1 1 1 0 1 1 1 1 AAA ATPase domain ABC_ATPase PF09818.4 gi|529077887|ref|YP_008376890.1| - 0.00092 17.9 0.2 0.17 10.4 0.0 2.1 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA_17 PF13207.1 gi|529077887|ref|YP_008376890.1| - 0.0013 19.5 0.1 0.0044 17.8 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|529077887|ref|YP_008376890.1| - 0.0025 17.2 0.3 0.013 14.9 0.2 2.1 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.10 gi|529077887|ref|YP_008376890.1| - 0.0048 15.6 0.0 0.0071 15.0 0.0 1.2 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein Arch_ATPase PF01637.13 gi|529077887|ref|YP_008376890.1| - 0.0074 16.0 0.2 0.18 11.4 0.0 2.2 2 1 0 2 2 2 1 Archaeal ATPase DeoRC PF00455.17 gi|529077887|ref|YP_008376890.1| - 0.0082 15.7 0.0 0.014 15.0 0.0 1.3 1 0 0 1 1 1 1 DeoR C terminal sensor domain AAA_10 PF12846.2 gi|529077887|ref|YP_008376890.1| - 0.0092 15.4 0.3 0.017 14.5 0.2 1.7 1 1 1 2 2 2 1 AAA-like domain Adeno_IVa2 PF02456.10 gi|529077887|ref|YP_008376890.1| - 0.0092 14.6 0.0 0.079 11.5 0.0 2.0 2 0 0 2 2 2 1 Adenovirus IVa2 protein KaiC PF06745.8 gi|529077887|ref|YP_008376890.1| - 0.014 14.5 0.1 0.05 12.7 0.0 1.8 2 0 0 2 2 2 0 KaiC AAA_33 PF13671.1 gi|529077887|ref|YP_008376890.1| - 0.014 15.2 0.0 0.03 14.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|529077887|ref|YP_008376890.1| - 0.019 14.6 0.2 0.28 10.8 0.0 2.6 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.1 gi|529077887|ref|YP_008376890.1| - 0.02 14.6 0.0 4.2 7.1 0.0 2.5 2 0 0 2 2 2 0 Part of AAA domain AAA_14 PF13173.1 gi|529077887|ref|YP_008376890.1| - 0.024 14.5 0.1 0.066 13.1 0.0 1.9 1 1 1 2 2 2 0 AAA domain NACHT PF05729.7 gi|529077887|ref|YP_008376890.1| - 0.026 14.1 0.0 0.058 13.0 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_30 PF13604.1 gi|529077887|ref|YP_008376890.1| - 0.03 13.8 0.2 0.37 10.3 0.0 2.4 2 1 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|529077887|ref|YP_008376890.1| - 0.037 12.8 0.0 0.072 11.9 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_24 PF13479.1 gi|529077887|ref|YP_008376890.1| - 0.038 13.5 0.2 0.056 13.0 0.1 1.6 1 1 0 1 1 1 0 AAA domain PRK PF00485.13 gi|529077887|ref|YP_008376890.1| - 0.048 13.2 0.1 0.091 12.3 0.1 1.7 1 1 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_18 PF13238.1 gi|529077887|ref|YP_008376890.1| - 0.05 13.8 0.1 0.12 12.7 0.0 1.8 2 1 0 2 2 1 0 AAA domain ATP-synt_ab PF00006.20 gi|529077887|ref|YP_008376890.1| - 0.061 12.8 0.0 0.24 10.8 0.0 1.9 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain MMR_HSR1 PF01926.18 gi|529077887|ref|YP_008376890.1| - 0.087 12.7 0.0 0.49 10.3 0.0 2.1 2 0 0 2 2 2 0 50S ribosome-binding GTPase MutS_V PF00488.16 gi|529077887|ref|YP_008376890.1| - 0.092 12.1 0.0 0.17 11.2 0.0 1.4 1 0 0 1 1 1 0 MutS domain V DUF87 PF01935.12 gi|529077887|ref|YP_008376890.1| - 0.1 12.3 0.0 3.1 7.5 0.0 2.2 2 1 0 2 2 2 0 Domain of unknown function DUF87 RNA_helicase PF00910.17 gi|529077887|ref|YP_008376890.1| - 0.12 12.5 0.0 0.28 11.3 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_28 PF13521.1 gi|529077887|ref|YP_008376890.1| - 0.16 11.8 0.6 0.69 9.8 0.0 2.2 2 1 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.17 gi|529077888|ref|YP_008376891.1| - 1e-21 77.2 11.2 1e-21 77.2 7.8 3.2 3 1 0 3 3 3 2 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|529077889|ref|YP_008376892.1| - 3.6e-17 62.4 8.8 3.6e-17 62.4 6.1 2.6 1 1 2 3 3 3 2 Binding-protein-dependent transport system inner membrane component PBP_like_2 PF12849.2 gi|529077890|ref|YP_008376893.1| - 1.4e-49 169.0 8.9 1.9e-24 86.6 1.1 2.6 2 0 0 2 2 2 2 PBP superfamily domain PBP_like PF12727.2 gi|529077890|ref|YP_008376893.1| - 8.6e-20 70.5 0.0 9.1e-09 34.5 0.0 2.4 2 0 0 2 2 2 2 PBP superfamily domain TAT_signal PF10518.4 gi|529077890|ref|YP_008376893.1| - 0.026 14.5 1.1 0.043 13.8 0.7 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence APH PF01636.18 gi|529077891|ref|YP_008376894.1| - 0.0008 19.2 0.4 0.0011 18.7 0.1 1.4 1 1 0 1 1 1 1 Phosphotransferase enzyme family RRN7 PF11781.3 gi|529077892|ref|YP_008376895.1| - 0.001 18.4 5.2 0.11 12.0 0.4 2.1 2 0 0 2 2 2 2 RNA polymerase I-specific transcription initiation factor Rrn7 Desulfoferrod_N PF06397.7 gi|529077892|ref|YP_008376895.1| - 0.0026 17.1 3.0 0.38 10.1 0.1 2.2 2 0 0 2 2 2 2 Desulfoferrodoxin, N-terminal domain Zn-ribbon_8 PF09723.5 gi|529077892|ref|YP_008376895.1| - 0.0045 16.9 2.6 0.0086 16.0 1.8 1.5 1 1 0 1 1 1 1 Zinc ribbon domain zf-FPG_IleRS PF06827.9 gi|529077892|ref|YP_008376895.1| - 0.01 15.4 1.0 2.1 8.0 0.0 2.1 2 0 0 2 2 2 1 Zinc finger found in FPG and IleRS zf-ISL3 PF14690.1 gi|529077892|ref|YP_008376895.1| - 0.038 14.0 0.7 1 9.4 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Methyltransf_13 PF08421.6 gi|529077892|ref|YP_008376895.1| - 0.048 13.1 1.1 2 7.9 0.1 2.1 2 0 0 2 2 2 0 Putative zinc binding domain Rubredoxin PF00301.15 gi|529077892|ref|YP_008376895.1| - 0.049 13.5 0.6 1.7 8.5 0.1 2.1 2 0 0 2 2 2 0 Rubredoxin TF_Zn_Ribbon PF08271.7 gi|529077892|ref|YP_008376895.1| - 0.056 12.7 1.8 0.98 8.7 0.0 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding A2L_zn_ribbon PF08792.5 gi|529077892|ref|YP_008376895.1| - 0.063 12.7 2.6 3.9 7.0 0.2 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain DUF2082 PF09855.4 gi|529077892|ref|YP_008376895.1| - 0.1 12.4 0.2 5.2 7.0 0.0 2.0 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) YhfH PF14149.1 gi|529077892|ref|YP_008376895.1| - 0.12 12.1 6.5 0.58 9.9 0.4 2.1 1 1 1 2 2 2 0 YhfH-like protein RecR PF02132.10 gi|529077892|ref|YP_008376895.1| - 0.32 10.4 5.8 4.9 6.6 4.0 2.1 1 1 0 1 1 1 0 RecR protein DUF4379 PF14311.1 gi|529077892|ref|YP_008376895.1| - 0.36 10.6 3.4 0.6 9.9 2.3 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4379) zf-RanBP PF00641.13 gi|529077892|ref|YP_008376895.1| - 0.37 9.9 4.1 2.5 7.2 0.7 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others GATA PF00320.22 gi|529077892|ref|YP_008376895.1| - 0.43 9.9 4.0 0.16 11.3 0.5 1.9 2 1 0 2 2 2 0 GATA zinc finger zf-HIT PF04438.11 gi|529077892|ref|YP_008376895.1| - 0.44 10.2 2.2 3.4 7.3 0.1 2.1 2 0 0 2 2 2 0 HIT zinc finger zinc_ribbon_2 PF13240.1 gi|529077892|ref|YP_008376895.1| - 0.45 10.0 3.6 3.4 7.2 0.3 2.1 2 0 0 2 2 2 0 zinc-ribbon domain DUF3797 PF12677.2 gi|529077892|ref|YP_008376895.1| - 0.71 9.5 6.6 1.5 8.5 0.5 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) OrfB_Zn_ribbon PF07282.6 gi|529077892|ref|YP_008376895.1| - 1.3 8.7 3.6 3.1 7.5 0.2 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain TFIIS_C PF01096.13 gi|529077892|ref|YP_008376895.1| - 2.9 7.5 7.8 6.2 6.5 0.8 2.6 2 1 1 3 3 3 0 Transcription factor S-II (TFIIS) NurA PF09376.5 gi|529077893|ref|YP_008376896.1| - 1.4e-26 93.4 0.0 1.7e-26 93.2 0.0 1.1 1 0 0 1 1 1 1 NurA domain MFS_1 PF07690.11 gi|529077895|ref|YP_008376898.1| - 2.1e-17 62.9 74.9 8.1e-17 60.9 32.6 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Nuc_H_symport PF03825.11 gi|529077895|ref|YP_008376898.1| - 5.5e-09 35.2 23.8 7.6e-09 34.8 16.5 1.1 1 0 0 1 1 1 1 Nucleoside H+ symporter MFS_1_like PF12832.2 gi|529077895|ref|YP_008376898.1| - 1.1e-07 31.5 0.2 1.1e-07 31.5 0.2 3.6 4 0 0 4 4 4 1 MFS_1 like family LacY_symp PF01306.14 gi|529077895|ref|YP_008376898.1| - 0.00013 20.6 6.9 0.00013 20.6 4.8 2.5 2 1 0 2 2 2 1 LacY proton/sugar symporter iPGM_N PF06415.8 gi|529077896|ref|YP_008376899.1| - 1.1e-78 263.6 0.1 1.5e-78 263.2 0.0 1.1 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Metalloenzyme PF01676.13 gi|529077896|ref|YP_008376899.1| - 5.3e-73 245.5 0.3 6.1e-73 245.3 0.2 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|529077896|ref|YP_008376899.1| - 6e-09 35.6 0.1 9.6e-09 35.0 0.1 1.3 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.18 gi|529077896|ref|YP_008376899.1| - 1.2e-05 24.6 0.2 0.00044 19.5 0.0 2.8 2 1 0 2 2 2 1 Sulfatase PglZ PF08665.7 gi|529077896|ref|YP_008376899.1| - 0.00085 19.0 0.0 0.0036 16.9 0.0 2.0 2 0 0 2 2 2 1 PglZ domain HTH_20 PF12840.2 gi|529077897|ref|YP_008376900.1| - 2.6e-06 27.1 0.6 3.8e-06 26.5 0.4 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|529077897|ref|YP_008376900.1| - 1.4e-05 24.6 0.1 2.5e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|529077897|ref|YP_008376900.1| - 6.3e-05 22.5 0.3 9.3e-05 22.0 0.2 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|529077897|ref|YP_008376900.1| - 0.00021 20.9 0.1 0.00028 20.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Phage_rep_org_N PF09681.5 gi|529077897|ref|YP_008376900.1| - 0.00025 20.5 0.0 0.00044 19.8 0.0 1.4 1 0 0 1 1 1 1 N-terminal phage replisome organiser (Phage_rep_org_N) DUF2250 PF10007.4 gi|529077897|ref|YP_008376900.1| - 0.00043 20.1 0.0 0.00065 19.5 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_27 PF13463.1 gi|529077897|ref|YP_008376900.1| - 0.0041 17.4 0.1 0.0079 16.4 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|529077897|ref|YP_008376900.1| - 0.011 15.0 0.1 0.023 14.0 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|529077897|ref|YP_008376900.1| - 0.014 14.9 0.2 0.023 14.2 0.1 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|529077897|ref|YP_008376900.1| - 0.023 14.3 0.0 0.04 13.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF387 PF04079.11 gi|529077897|ref|YP_008376900.1| - 0.029 13.7 0.0 0.036 13.4 0.0 1.2 1 0 0 1 1 1 0 Putative transcriptional regulators (Ypuh-like) HTH_34 PF13601.1 gi|529077897|ref|YP_008376900.1| - 0.12 12.3 0.0 0.2 11.7 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain Peptidase_M48 PF01435.13 gi|529077899|ref|YP_008376902.1| - 1.7e-38 132.4 0.1 2.2e-38 132.0 0.1 1.1 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|529077899|ref|YP_008376902.1| - 2.2e-08 33.4 0.7 4.6e-08 32.3 0.0 1.8 1 1 1 2 2 2 1 BlaR1 peptidase M56 DUF45 PF01863.12 gi|529077899|ref|YP_008376902.1| - 0.012 15.4 0.0 0.017 14.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF45 SecD_SecF PF02355.11 gi|529077899|ref|YP_008376902.1| - 0.028 13.6 0.6 0.028 13.6 0.4 1.5 2 0 0 2 2 2 0 Protein export membrane protein SprT-like PF10263.4 gi|529077899|ref|YP_008376902.1| - 0.096 12.3 0.1 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 SprT-like family Peptidase_MA_2 PF13485.1 gi|529077899|ref|YP_008376902.1| - 0.1 12.6 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 Peptidase MA superfamily BSP PF04450.7 gi|529077899|ref|YP_008376902.1| - 0.12 11.8 0.1 0.17 11.3 0.0 1.2 1 0 0 1 1 1 0 Peptidase of plants and bacteria YbjQ_1 PF01906.12 gi|529077901|ref|YP_008376904.1| - 8.9e-36 122.5 1.5 9.7e-36 122.3 1.0 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding SeleniumBinding PF11524.3 gi|529077901|ref|YP_008376904.1| - 0.0047 17.0 0.1 0.012 15.7 0.0 1.7 1 1 1 2 2 2 1 Selenium binding protein TauE PF01925.14 gi|529077902|ref|YP_008376905.1| - 5.2e-15 55.5 28.8 5.2e-15 55.5 20.0 1.6 1 1 0 1 1 1 1 Sulfite exporter TauE/SafE QRPTase_C PF01729.14 gi|529077904|ref|YP_008376907.1| - 5.1e-56 188.8 3.1 6.4e-56 188.5 2.2 1.1 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|529077904|ref|YP_008376907.1| - 9.5e-21 73.4 0.0 2.5e-20 72.0 0.0 1.7 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain Ribul_P_3_epim PF00834.14 gi|529077904|ref|YP_008376907.1| - 0.0052 15.9 0.8 0.15 11.1 0.0 2.2 1 1 1 2 2 2 2 Ribulose-phosphate 3 epimerase family FAD_binding_2 PF00890.19 gi|529077905|ref|YP_008376908.1| - 1.4e-76 258.0 2.6 1.8e-76 257.6 1.8 1.1 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|529077905|ref|YP_008376908.1| - 3.1e-09 37.0 1.5 0.0002 21.3 0.0 2.6 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|529077905|ref|YP_008376908.1| - 5.8e-09 35.3 0.3 6e-08 31.9 0.1 2.5 3 0 0 3 3 3 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|529077905|ref|YP_008376908.1| - 1.8e-07 30.3 0.3 4.8e-05 22.3 1.1 2.2 2 0 0 2 2 2 2 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|529077905|ref|YP_008376908.1| - 7.7e-07 28.5 4.7 1.6e-05 24.1 3.2 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase Succ_DH_flav_C PF02910.15 gi|529077905|ref|YP_008376908.1| - 1.4e-06 28.1 0.1 3e-06 27.1 0.1 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term HI0933_like PF03486.9 gi|529077905|ref|YP_008376908.1| - 0.0016 16.9 0.2 0.026 13.0 0.1 2.2 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|529077905|ref|YP_008376908.1| - 0.002 18.1 0.9 0.0065 16.4 0.7 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|529077905|ref|YP_008376908.1| - 0.0099 16.2 0.1 0.033 14.5 0.1 1.9 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DUF2398 PF09661.5 gi|529077905|ref|YP_008376908.1| - 0.012 14.4 0.2 0.022 13.5 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2398) NadA PF02445.11 gi|529077906|ref|YP_008376909.1| - 7.2e-103 343.4 0.0 8.2e-103 343.2 0.0 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein PHO4 PF01384.15 gi|529077907|ref|YP_008376910.1| - 1.8e-39 135.2 28.0 2.6e-39 134.7 19.4 1.2 1 0 0 1 1 1 1 Phosphate transporter family AA_permease PF00324.16 gi|529077908|ref|YP_008376911.1| - 2e-49 168.2 42.2 2.5e-49 167.9 29.3 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.1 gi|529077908|ref|YP_008376911.1| - 2.7e-44 151.4 40.4 3.3e-44 151.0 28.0 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease_C PF13906.1 gi|529077908|ref|YP_008376911.1| - 0.0098 15.7 3.0 0.0098 15.7 2.1 2.6 3 0 0 3 3 3 1 C-terminus of AA_permease TraG_N PF07916.6 gi|529077908|ref|YP_008376911.1| - 0.33 9.3 5.5 0.21 9.9 2.5 1.8 1 1 0 1 1 1 0 TraG-like protein, N-terminal region Usp PF00582.21 gi|529077909|ref|YP_008376912.1| - 2.2e-09 37.6 5.1 1e-07 32.2 0.8 2.1 2 0 0 2 2 2 2 Universal stress protein family adh_short PF00106.20 gi|529077910|ref|YP_008376913.1| - 1e-25 90.6 2.3 1.5e-25 90.0 1.6 1.3 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|529077910|ref|YP_008376913.1| - 4.5e-13 49.5 0.0 6.1e-13 49.1 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|529077910|ref|YP_008376913.1| - 4.4e-11 42.7 0.3 5.6e-11 42.4 0.2 1.2 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|529077910|ref|YP_008376913.1| - 8.6e-07 29.1 1.5 1.5e-06 28.3 1.0 1.5 1 1 0 1 1 1 1 NADH(P)-binding Fe-ADH PF00465.14 gi|529077910|ref|YP_008376913.1| - 0.0043 15.7 0.0 0.011 14.3 0.0 1.6 2 0 0 2 2 2 1 Iron-containing alcohol dehydrogenase Epimerase PF01370.16 gi|529077910|ref|YP_008376913.1| - 0.0097 15.3 0.1 0.082 12.3 0.1 2.1 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3HCDH_N PF02737.13 gi|529077910|ref|YP_008376913.1| - 0.048 13.3 0.3 0.092 12.3 0.2 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|529077910|ref|YP_008376913.1| - 0.11 12.2 0.1 0.18 11.6 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase MerC PF03203.9 gi|529077911|ref|YP_008376914.1| - 0.4 11.0 3.0 0.52 10.6 2.0 1.4 1 1 0 1 1 1 0 MerC mercury resistance protein OrfB_Zn_ribbon PF07282.6 gi|529077912|ref|YP_008376915.1| - 1.3e-20 72.8 1.5 3.3e-20 71.5 1.1 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|529077912|ref|YP_008376915.1| - 2.7e-14 53.1 0.0 4.5e-14 52.4 0.0 1.4 1 0 0 1 1 1 1 Probable transposase Rieske PF00355.21 gi|529077912|ref|YP_008376915.1| - 0.06 12.9 0.3 0.15 11.6 0.2 1.7 1 0 0 1 1 1 0 Rieske [2Fe-2S] domain ABM PF03992.11 gi|529077912|ref|YP_008376915.1| - 0.062 13.3 0.1 0.25 11.4 0.0 2.0 2 0 0 2 2 2 0 Antibiotic biosynthesis monooxygenase SprT-like PF10263.4 gi|529077912|ref|YP_008376915.1| - 0.13 11.8 3.8 0.22 11.1 2.6 1.4 1 0 0 1 1 1 0 SprT-like family PAS_4 PF08448.5 gi|529077913|ref|YP_008376916.1| - 1e-45 154.2 8.1 1.2e-16 60.7 0.1 4.3 4 0 0 4 4 4 3 PAS fold PAS_9 PF13426.1 gi|529077913|ref|YP_008376916.1| - 5.2e-35 119.9 0.4 1.1e-16 61.1 0.0 3.8 4 0 0 4 4 3 3 PAS domain PAS PF00989.19 gi|529077913|ref|YP_008376916.1| - 4.1e-34 116.7 0.2 2.7e-18 65.7 0.0 4.0 3 1 0 3 3 3 3 PAS fold HATPase_c PF02518.21 gi|529077913|ref|YP_008376916.1| - 1.7e-18 66.3 0.1 4.2e-18 65.0 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|529077913|ref|YP_008376916.1| - 2.4e-16 58.8 0.2 3.2e-06 26.7 0.0 4.5 5 0 0 5 5 3 3 PAS domain HisKA PF00512.20 gi|529077913|ref|YP_008376916.1| - 3.7e-12 46.0 0.3 3.7e-12 46.0 0.2 2.6 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain Response_reg PF00072.19 gi|529077913|ref|YP_008376916.1| - 9.4e-12 44.9 0.1 2.1e-11 43.8 0.1 1.6 1 0 0 1 1 1 1 Response regulator receiver domain GAF_3 PF13492.1 gi|529077913|ref|YP_008376916.1| - 4e-10 39.8 1.0 1.3e-07 31.7 0.0 3.4 2 1 1 3 3 3 1 GAF domain PAS_3 PF08447.6 gi|529077913|ref|YP_008376916.1| - 2.7e-08 33.8 0.2 2.9e-06 27.2 0.0 3.5 3 0 0 3 3 3 1 PAS fold GAF_2 PF13185.1 gi|529077913|ref|YP_008376916.1| - 2.8e-08 34.4 0.6 4.6e-06 27.1 0.1 3.0 2 0 0 2 2 2 1 GAF domain PAS_10 PF13596.1 gi|529077913|ref|YP_008376916.1| - 0.00037 20.7 0.0 0.036 14.3 0.0 2.6 2 0 0 2 2 2 1 PAS domain GAF PF01590.21 gi|529077913|ref|YP_008376916.1| - 0.00067 19.8 0.0 0.0022 18.1 0.0 2.0 1 0 0 1 1 1 1 GAF domain PAS_7 PF12860.2 gi|529077913|ref|YP_008376916.1| - 0.004 17.1 0.1 0.41 10.6 0.0 4.1 2 2 0 2 2 2 1 PAS fold HATPase_c_3 PF13589.1 gi|529077913|ref|YP_008376916.1| - 0.041 13.5 0.0 0.087 12.4 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OKR_DC_1_N PF03709.10 gi|529077913|ref|YP_008376916.1| - 0.051 13.6 0.1 0.14 12.1 0.0 1.7 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain SUKH_6 PF14568.1 gi|529077913|ref|YP_008376916.1| - 0.066 13.6 0.0 0.27 11.7 0.0 2.1 1 0 0 1 1 1 0 SMI1-KNR4 cell-wall HisKA PF00512.20 gi|529077914|ref|YP_008376917.1| - 2.7e-15 56.1 1.9 1.1e-13 50.9 0.2 2.5 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c PF02518.21 gi|529077914|ref|YP_008376917.1| - 8.1e-14 51.2 0.0 1.5e-13 50.4 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF PF01590.21 gi|529077914|ref|YP_008376917.1| - 1.1e-06 28.7 0.0 2.8e-06 27.5 0.0 1.7 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.1 gi|529077914|ref|YP_008376917.1| - 8.4e-05 22.6 0.0 0.00049 20.1 0.0 2.1 2 0 0 2 2 2 1 GAF domain HATPase_c_2 PF13581.1 gi|529077914|ref|YP_008376917.1| - 0.022 14.5 0.0 0.04 13.6 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain GAF_2 PF13185.1 gi|529077914|ref|YP_008376917.1| - 0.026 14.9 0.0 0.074 13.5 0.0 1.8 1 0 0 1 1 1 0 GAF domain KIAA1328 PF15369.1 gi|529077914|ref|YP_008376917.1| - 0.093 12.5 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein KIAA1328 Glyco_tranf_2_3 PF13641.1 gi|529077916|ref|YP_008376919.1| - 1.1e-29 103.9 0.0 2.4e-29 102.7 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.21 gi|529077916|ref|YP_008376919.1| - 3.5e-20 72.3 0.4 3.4e-11 43.1 0.3 2.3 2 0 0 2 2 2 2 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.1 gi|529077916|ref|YP_008376919.1| - 1.2e-16 61.0 2.8 1.2e-16 61.0 1.9 2.1 2 1 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|529077916|ref|YP_008376919.1| - 1.1e-09 37.8 0.0 2.8e-09 36.5 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferase family 21 Chitin_synth_2 PF03142.10 gi|529077916|ref|YP_008376919.1| - 8.3e-05 21.1 2.0 0.0014 17.1 0.1 2.7 3 0 0 3 3 3 1 Chitin synthase Glyco_tranf_2_2 PF10111.4 gi|529077916|ref|YP_008376919.1| - 0.11 11.6 0.0 4.8 6.1 0.0 2.4 2 0 0 2 2 2 0 Glycosyltransferase like family 2 HEAT_2 PF13646.1 gi|529077917|ref|YP_008376920.1| - 5.2e-11 42.6 1.3 2.1e-10 40.7 0.2 2.5 2 2 0 2 2 2 1 HEAT repeats HEAT PF02985.17 gi|529077917|ref|YP_008376920.1| - 0.0031 17.4 1.8 1.4 9.1 0.0 3.7 5 0 0 5 5 5 2 HEAT repeat HEAT_EZ PF13513.1 gi|529077917|ref|YP_008376920.1| - 0.01 16.2 2.3 0.54 10.8 0.5 3.4 3 0 0 3 3 3 0 HEAT-like repeat DUF1049 PF06305.6 gi|529077917|ref|YP_008376920.1| - 0.19 11.2 0.9 0.39 10.2 0.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1049) HEAT_PBS PF03130.11 gi|529077917|ref|YP_008376920.1| - 1.2 9.8 5.1 0.34 11.5 0.5 2.6 3 0 0 3 3 3 0 PBS lyase HEAT-like repeat Response_reg PF00072.19 gi|529077918|ref|YP_008376921.1| - 1.2e-28 99.3 0.1 1.3e-28 99.2 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain FleQ PF06490.6 gi|529077918|ref|YP_008376921.1| - 0.0002 21.4 0.0 0.00028 21.0 0.0 1.2 1 0 0 1 1 1 1 Flagellar regulatory protein FleQ DUF162 PF02589.10 gi|529077918|ref|YP_008376921.1| - 0.052 13.0 0.0 0.059 12.8 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised ACR, YkgG family COG1556 Methyltransf_11 PF08241.7 gi|529077920|ref|YP_008376923.1| - 1.1e-21 77.0 0.0 2.7e-21 75.8 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|529077920|ref|YP_008376923.1| - 2e-18 66.6 0.0 2.4e-18 66.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|529077920|ref|YP_008376923.1| - 5.9e-14 52.6 0.0 1.2e-13 51.5 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|529077920|ref|YP_008376923.1| - 5.4e-13 49.2 0.0 9.6e-13 48.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|529077920|ref|YP_008376923.1| - 3.6e-11 42.6 0.0 5.2e-11 42.1 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|529077920|ref|YP_008376923.1| - 5.5e-11 42.7 0.0 8.5e-11 42.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|529077920|ref|YP_008376923.1| - 4.3e-10 39.3 0.0 6e-10 38.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|529077920|ref|YP_008376923.1| - 5e-08 32.9 0.6 1.1e-07 31.8 0.2 1.7 2 0 0 2 2 2 1 Methyltransferase domain MetW PF07021.7 gi|529077920|ref|YP_008376923.1| - 0.00037 19.9 0.0 0.00057 19.3 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW RrnaAD PF00398.15 gi|529077920|ref|YP_008376923.1| - 0.0044 16.0 0.0 0.0071 15.3 0.0 1.4 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_29 PF03141.11 gi|529077920|ref|YP_008376923.1| - 0.023 13.0 0.0 0.025 12.9 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase MTS PF05175.9 gi|529077920|ref|YP_008376923.1| - 0.031 13.6 0.0 0.048 13.0 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase small domain Methyltransf_8 PF05148.10 gi|529077920|ref|YP_008376923.1| - 0.038 13.6 0.0 0.053 13.1 0.0 1.3 1 0 0 1 1 1 0 Hypothetical methyltransferase DREV PF05219.7 gi|529077920|ref|YP_008376923.1| - 0.12 11.2 0.0 0.16 10.8 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase DUF1349 PF07081.6 gi|529077921|ref|YP_008376924.1| - 5.5e-61 205.1 1.3 6.1e-61 204.9 0.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1349) SelB-wing_1 PF09105.5 gi|529077921|ref|YP_008376924.1| - 0.15 11.7 0.3 0.3 10.7 0.2 1.5 1 0 0 1 1 1 0 Elongation factor SelB, winged helix AA_permease PF00324.16 gi|529077922|ref|YP_008376925.1| - 0.0046 15.3 1.2 0.0046 15.3 0.9 1.0 1 0 0 1 1 1 1 Amino acid permease Pilus_PilP PF11356.3 gi|529077923|ref|YP_008376926.1| - 0.0041 17.3 1.8 2.7 8.2 0.1 3.0 3 0 0 3 3 3 2 Type IV pilus biogenesis PQQ_3 PF13570.1 gi|529077923|ref|YP_008376926.1| - 0.018 15.3 0.8 0.089 13.0 0.1 2.6 2 0 0 2 2 2 0 PQQ-like domain DUF3568 PF12092.3 gi|529077923|ref|YP_008376926.1| - 0.07 12.8 0.3 0.15 11.7 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3568) MliC PF09864.4 gi|529077923|ref|YP_008376926.1| - 0.11 12.2 1.2 5.7 6.7 0.0 3.1 4 0 0 4 4 4 0 Membrane-bound lysozyme-inhibitor of c-type lysozyme Big_3 PF07523.7 gi|529077923|ref|YP_008376926.1| - 9.5 6.3 12.0 9.2 6.4 0.1 4.1 5 1 0 5 5 5 0 Bacterial Ig-like domain (group 3) TAT_signal PF10518.4 gi|529077924|ref|YP_008376927.1| - 8.7e-05 22.2 0.0 0.00024 20.8 0.0 1.8 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence TAT_signal PF10518.4 gi|529077925|ref|YP_008376928.1| - 0.018 14.9 4.1 0.049 13.6 2.9 1.8 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Iron_transport PF10634.4 gi|529077925|ref|YP_008376928.1| - 0.054 13.3 0.0 0.3 10.9 0.0 2.1 2 0 0 2 2 2 0 Fe2+ transport protein LPAM_2 PF13627.1 gi|529077925|ref|YP_008376928.1| - 9 6.1 6.9 16 5.3 4.8 1.4 1 0 0 1 1 1 0 Prokaryotic lipoprotein-attachment site UPF0547 PF10571.4 gi|529077926|ref|YP_008376929.1| - 0.0008 19.0 5.3 0.28 10.9 0.1 2.1 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.5 gi|529077926|ref|YP_008376929.1| - 0.0023 17.8 0.7 0.4 10.6 0.0 2.1 2 0 0 2 2 2 1 Zinc ribbon domain Lar_restr_allev PF14354.1 gi|529077926|ref|YP_008376929.1| - 0.0024 18.1 0.5 0.0025 18.0 0.4 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar zinc_ribbon_2 PF13240.1 gi|529077926|ref|YP_008376929.1| - 0.004 16.6 0.8 0.049 13.1 0.1 2.0 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.2 gi|529077926|ref|YP_008376929.1| - 0.0061 16.3 0.9 0.019 14.7 0.6 1.7 1 1 0 1 1 1 1 Double zinc ribbon zinc_ribbon_4 PF13717.1 gi|529077926|ref|YP_008376929.1| - 0.01 15.5 0.8 2.2 8.0 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-dskA_traR PF01258.12 gi|529077926|ref|YP_008376929.1| - 0.01 15.5 5.1 0.047 13.4 1.4 2.2 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger zf-ribbon_3 PF13248.1 gi|529077926|ref|YP_008376929.1| - 0.015 14.4 3.4 0.073 12.3 2.5 1.8 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|529077926|ref|YP_008376929.1| - 0.022 14.3 1.8 2.3 7.8 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Terminase_GpA PF05876.7 gi|529077926|ref|YP_008376929.1| - 0.028 12.8 0.1 0.028 12.7 0.1 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) zf-RING_3 PF14369.1 gi|529077926|ref|YP_008376929.1| - 0.032 14.2 1.2 3.2 7.8 0.0 2.3 2 0 0 2 2 2 0 zinc-finger zf-FPG_IleRS PF06827.9 gi|529077926|ref|YP_008376929.1| - 0.043 13.4 1.0 0.043 13.4 0.7 2.1 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS DUF329 PF03884.9 gi|529077926|ref|YP_008376929.1| - 0.045 13.3 1.5 4.7 6.8 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF329) zf-TFIIB PF13453.1 gi|529077926|ref|YP_008376929.1| - 0.045 12.9 3.8 0.14 11.3 2.6 1.8 1 1 1 2 2 2 0 Transcription factor zinc-finger zf-RING_4 PF14570.1 gi|529077926|ref|YP_008376929.1| - 0.051 13.1 1.4 3.1 7.4 0.0 2.1 2 0 0 2 2 2 0 RING/Ubox like zinc-binding domain DUF35_N PF12172.3 gi|529077926|ref|YP_008376929.1| - 0.059 13.2 2.2 2.6 8.0 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Prok-RING_1 PF14446.1 gi|529077926|ref|YP_008376929.1| - 0.069 12.8 0.1 5.1 6.8 0.0 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 HypA PF01155.14 gi|529077926|ref|YP_008376929.1| - 0.09 12.4 0.3 0.11 12.2 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zinc-ribbons_6 PF07191.7 gi|529077926|ref|YP_008376929.1| - 0.091 12.5 0.6 0.17 11.6 0.4 1.5 1 1 0 1 1 1 0 zinc-ribbons DUF3797 PF12677.2 gi|529077926|ref|YP_008376929.1| - 0.11 12.1 0.2 12 5.5 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3797) FANCL_C PF11793.3 gi|529077926|ref|YP_008376929.1| - 0.11 12.4 0.3 11 6.0 0.1 2.1 2 0 0 2 2 2 0 FANCL C-terminal domain FYDLN_acid PF09538.5 gi|529077926|ref|YP_008376929.1| - 0.23 12.0 1.1 4.8 7.8 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (FYDLN_acid) DNA_ligase_ZBD PF03119.11 gi|529077926|ref|YP_008376929.1| - 0.32 10.7 0.4 0.32 10.7 0.2 2.7 2 1 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-C3HC4_3 PF13920.1 gi|529077926|ref|YP_008376929.1| - 0.45 10.2 3.1 6.9 6.4 2.3 2.0 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Sgf11 PF08209.6 gi|529077926|ref|YP_008376929.1| - 0.46 9.8 2.3 11 5.4 0.1 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-NADH-PPase PF09297.6 gi|529077926|ref|YP_008376929.1| - 0.51 9.9 5.4 0.36 10.3 0.7 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|529077926|ref|YP_008376929.1| - 0.53 9.6 4.8 2.2 7.6 3.3 1.9 1 1 0 1 1 1 0 TFIIB zinc-binding Mu-like_Com PF10122.4 gi|529077926|ref|YP_008376929.1| - 0.72 8.9 2.8 0.82 8.7 0.5 1.9 2 0 0 2 2 2 0 Mu-like prophage protein Com Zn_Tnp_IS1595 PF12760.2 gi|529077926|ref|YP_008376929.1| - 1.2 8.9 4.6 19 5.1 3.3 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-ISL3 PF14690.1 gi|529077926|ref|YP_008376929.1| - 1.3 9.1 4.9 2.5 8.2 0.8 2.3 2 1 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-C4_Topoisom PF01396.14 gi|529077926|ref|YP_008376929.1| - 1.3 8.5 5.3 29 4.2 3.6 2.2 1 1 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger zf-tcix PF14952.1 gi|529077926|ref|YP_008376929.1| - 6.1 6.2 5.8 0.53 9.6 0.3 1.8 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding UPF0029 PF01205.14 gi|529077927|ref|YP_008376930.1| - 7.9e-34 115.6 0.0 1.1e-33 115.2 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein family UPF0029 DUF1949 PF09186.6 gi|529077927|ref|YP_008376930.1| - 1.3e-10 40.7 0.3 7e-10 38.3 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF1949) EFG_C PF00679.19 gi|529077927|ref|YP_008376930.1| - 0.0017 18.2 0.0 0.0031 17.3 0.0 1.4 1 0 0 1 1 1 1 Elongation factor G C-terminus Antitoxin-MazE PF04014.13 gi|529077928|ref|YP_008376931.1| - 9.5e-07 28.4 0.1 1.3e-06 27.9 0.1 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE DUF302 PF03625.9 gi|529077928|ref|YP_008376931.1| - 0.025 14.1 0.0 0.048 13.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF302 PIN PF01850.16 gi|529077929|ref|YP_008376932.1| - 8.1e-10 39.0 0.5 9.3e-10 38.8 0.3 1.0 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|529077929|ref|YP_008376932.1| - 0.04 14.5 0.3 0.047 14.3 0.2 1.2 1 0 0 1 1 1 0 PIN domain UPRTase PF14681.1 gi|529077930|ref|YP_008376933.1| - 1e-59 201.2 0.0 1.2e-59 201.0 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.22 gi|529077930|ref|YP_008376933.1| - 1.7e-06 27.7 0.1 2.8e-06 27.0 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|529077930|ref|YP_008376933.1| - 0.052 12.8 0.0 0.065 12.5 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase PHO4 PF01384.15 gi|529077932|ref|YP_008376935.1| - 3.6e-41 140.8 31.3 3.6e-41 140.8 21.7 1.5 1 1 1 2 2 2 1 Phosphate transporter family MlrC_C PF07171.7 gi|529077932|ref|YP_008376935.1| - 0.024 14.1 0.8 0.068 12.7 0.6 1.7 1 0 0 1 1 1 0 MlrC C-terminus DUF21 PF01595.15 gi|529077933|ref|YP_008376936.1| - 7.5e-54 181.8 1.0 1.1e-53 181.3 0.7 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF21 CorC_HlyC PF03471.12 gi|529077933|ref|YP_008376936.1| - 2.1e-21 75.5 1.9 2.1e-21 75.5 1.3 1.8 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.23 gi|529077933|ref|YP_008376936.1| - 1.3e-16 60.0 6.9 7.9e-08 31.9 0.2 2.8 3 0 0 3 3 3 2 CBS domain PHB_acc_N PF07879.6 gi|529077933|ref|YP_008376936.1| - 0.021 14.5 0.8 0.45 10.3 0.0 2.8 3 0 0 3 3 3 0 PHB/PHA accumulation regulator DNA-binding domain ArsD PF06953.6 gi|529077933|ref|YP_008376936.1| - 0.13 12.4 0.6 3.2 7.9 0.1 2.9 2 1 1 3 3 3 0 Arsenical resistance operon trans-acting repressor ArsD Sua5_yciO_yrdC PF01300.13 gi|529077934|ref|YP_008376937.1| - 5.1e-50 169.2 0.0 5.8e-50 169.0 0.0 1.0 1 0 0 1 1 1 1 Telomere recombination Cas_Cas4 PF01930.12 gi|529077935|ref|YP_008376938.1| - 0.0001 22.2 0.0 0.00032 20.6 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function DUF83 Exo5 PF09810.4 gi|529077935|ref|YP_008376938.1| - 0.28 10.3 1.1 0.44 9.7 0.8 1.2 1 0 0 1 1 1 0 Exonuclease V - a 5' deoxyribonuclease Pribosyltran_N PF13793.1 gi|529077937|ref|YP_008376940.1| - 7.4e-25 86.9 0.0 1.2e-21 76.5 0.0 2.2 2 0 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|529077937|ref|YP_008376940.1| - 1.6e-08 34.3 1.8 1.7e-07 30.9 0.5 2.9 2 2 0 2 2 2 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|529077937|ref|YP_008376940.1| - 0.14 11.4 1.6 3.6 6.8 0.2 2.5 2 1 1 3 3 3 0 Phosphoribosyl transferase PK_C PF02887.11 gi|529077939|ref|YP_008376942.1| - 1.2e-08 34.5 0.1 1.9e-08 33.8 0.1 1.4 1 1 0 1 1 1 1 Pyruvate kinase, alpha/beta domain PCMT PF01135.14 gi|529077939|ref|YP_008376942.1| - 0.11 12.0 0.1 1.6 8.1 0.0 2.1 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MatE PF01554.13 gi|529077940|ref|YP_008376943.1| - 8.6e-52 175.0 21.6 7.5e-29 100.4 4.9 3.0 4 0 0 4 4 4 2 MatE Polysacc_synt_C PF14667.1 gi|529077940|ref|YP_008376943.1| - 3e-09 36.8 11.1 3e-09 36.8 7.7 3.9 3 1 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Hexokinase_1 PF00349.16 gi|529077940|ref|YP_008376943.1| - 0.18 11.1 0.0 0.3 10.3 0.0 1.2 1 0 0 1 1 1 0 Hexokinase TrkA_N PF02254.13 gi|529077941|ref|YP_008376944.1| - 1.3e-26 92.8 0.6 2.1e-26 92.1 0.4 1.3 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|529077941|ref|YP_008376944.1| - 3.8e-13 48.8 0.5 8.8e-13 47.6 0.1 1.8 2 0 0 2 2 2 1 TrkA-C domain NAD_binding_7 PF13241.1 gi|529077941|ref|YP_008376944.1| - 4.8e-06 26.7 0.2 7.9e-06 26.0 0.1 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding 3HCDH_N PF02737.13 gi|529077941|ref|YP_008376944.1| - 1.8e-05 24.4 0.4 2.7e-05 23.9 0.3 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|529077941|ref|YP_008376944.1| - 1.8e-05 24.1 0.0 4.6e-05 22.8 0.0 1.6 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_10 PF13460.1 gi|529077941|ref|YP_008376944.1| - 3e-05 24.1 2.3 4.2e-05 23.6 0.5 1.9 2 0 0 2 2 2 1 NADH(P)-binding AdoHcyase_NAD PF00670.16 gi|529077941|ref|YP_008376944.1| - 4e-05 23.4 0.1 5.4e-05 23.0 0.1 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain FAD_binding_3 PF01494.14 gi|529077941|ref|YP_008376944.1| - 6e-05 22.2 0.1 7.4e-05 21.9 0.1 1.1 1 0 0 1 1 1 1 FAD binding domain ApbA PF02558.11 gi|529077941|ref|YP_008376944.1| - 0.00025 20.5 0.1 0.00039 19.8 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA DAO PF01266.19 gi|529077941|ref|YP_008376944.1| - 0.00027 19.9 0.8 0.0005 19.0 0.3 1.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase Saccharop_dh PF03435.13 gi|529077941|ref|YP_008376944.1| - 0.00032 19.8 0.2 0.00037 19.5 0.1 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase AlaDh_PNT_C PF01262.16 gi|529077941|ref|YP_008376944.1| - 0.00079 19.0 0.6 0.0013 18.3 0.3 1.4 1 1 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NmrA PF05368.8 gi|529077941|ref|YP_008376944.1| - 0.00099 18.4 0.2 0.002 17.4 0.1 1.5 1 1 0 1 1 1 1 NmrA-like family NAD_binding_2 PF03446.10 gi|529077941|ref|YP_008376944.1| - 0.0011 18.8 0.1 0.0019 18.0 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|529077941|ref|YP_008376944.1| - 0.0015 17.7 0.1 0.0024 17.0 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|529077941|ref|YP_008376944.1| - 0.003 16.9 0.1 0.0051 16.1 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.12 gi|529077941|ref|YP_008376944.1| - 0.0055 17.1 0.4 0.033 14.6 0.1 2.1 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Pyr_redox PF00070.22 gi|529077941|ref|YP_008376944.1| - 0.0058 17.0 0.3 0.011 16.0 0.2 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|529077941|ref|YP_008376944.1| - 0.0058 15.7 0.1 0.0072 15.4 0.1 1.2 1 0 0 1 1 1 1 Thi4 family Gp_dh_N PF00044.19 gi|529077941|ref|YP_008376944.1| - 0.0069 16.3 0.1 0.011 15.6 0.0 1.4 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain XdhC_C PF13478.1 gi|529077941|ref|YP_008376944.1| - 0.032 14.5 0.1 0.061 13.6 0.1 1.5 1 0 0 1 1 1 0 XdhC Rossmann domain Pyr_redox_2 PF07992.9 gi|529077941|ref|YP_008376944.1| - 0.043 13.6 0.5 0.072 12.9 0.4 1.7 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase GFO_IDH_MocA PF01408.17 gi|529077941|ref|YP_008376944.1| - 0.062 13.8 0.1 0.099 13.1 0.1 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold NAD_Gly3P_dh_N PF01210.18 gi|529077941|ref|YP_008376944.1| - 0.1 12.3 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus UPF0146 PF03686.8 gi|529077941|ref|YP_008376944.1| - 0.1 12.3 0.3 0.19 11.5 0.2 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) CPSase_L_chain PF00289.17 gi|529077941|ref|YP_008376944.1| - 0.11 12.6 0.3 0.19 11.8 0.2 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain ADH_zinc_N PF00107.21 gi|529077941|ref|YP_008376944.1| - 0.41 10.1 3.3 6.8 6.2 1.5 2.2 1 1 1 2 2 2 0 Zinc-binding dehydrogenase Glyco_trans_4_4 PF13579.1 gi|529077941|ref|YP_008376944.1| - 0.65 10.1 4.0 0.31 11.1 0.7 2.0 2 1 0 2 2 2 0 Glycosyl transferase 4-like domain HTH_24 PF13412.1 gi|529077942|ref|YP_008376945.1| - 2.1e-12 46.1 0.2 3.7e-12 45.4 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|529077942|ref|YP_008376945.1| - 3.3e-12 45.9 0.1 5.8e-12 45.1 0.0 1.4 1 0 0 1 1 1 1 AsnC family HTH_5 PF01022.15 gi|529077942|ref|YP_008376945.1| - 1.4e-08 34.2 0.1 2.5e-08 33.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_AsnC-type PF13404.1 gi|529077942|ref|YP_008376945.1| - 1.4e-08 34.0 0.5 2.2e-08 33.4 0.3 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.2 gi|529077942|ref|YP_008376945.1| - 5.9e-08 32.3 0.0 1e-07 31.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|529077942|ref|YP_008376945.1| - 1.3e-06 27.9 0.0 2.7e-06 26.9 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.5 gi|529077942|ref|YP_008376945.1| - 3.2e-05 23.4 0.0 5.3e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_DeoR PF08220.7 gi|529077942|ref|YP_008376945.1| - 0.0001 21.7 0.4 0.00021 20.7 0.1 1.7 2 0 0 2 2 1 1 DeoR-like helix-turn-helix domain TrmB PF01978.14 gi|529077942|ref|YP_008376945.1| - 0.00026 20.6 0.0 0.00048 19.7 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.1 gi|529077942|ref|YP_008376945.1| - 0.00045 20.1 0.0 0.00079 19.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.16 gi|529077942|ref|YP_008376945.1| - 0.00046 19.5 0.0 0.00098 18.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR PF01047.17 gi|529077942|ref|YP_008376945.1| - 0.00047 19.7 0.0 0.0011 18.6 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_38 PF13936.1 gi|529077942|ref|YP_008376945.1| - 0.0011 18.4 0.0 0.002 17.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|529077942|ref|YP_008376945.1| - 0.0011 18.4 0.0 0.0019 17.7 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_36 PF13730.1 gi|529077942|ref|YP_008376945.1| - 0.0018 18.3 0.0 0.0028 17.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.1 gi|529077942|ref|YP_008376945.1| - 0.0031 17.4 0.0 0.0055 16.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_10 PF04967.7 gi|529077942|ref|YP_008376945.1| - 0.0038 16.7 0.0 0.0095 15.4 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|529077942|ref|YP_008376945.1| - 0.0077 15.8 0.0 0.013 15.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|529077942|ref|YP_008376945.1| - 0.0094 15.7 0.0 0.015 15.0 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_41 PF14502.1 gi|529077942|ref|YP_008376945.1| - 0.029 13.9 0.0 0.058 13.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|529077942|ref|YP_008376945.1| - 0.048 13.7 0.0 0.079 13.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix Fe_dep_repress PF01325.14 gi|529077942|ref|YP_008376945.1| - 0.054 13.4 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.1 gi|529077942|ref|YP_008376945.1| - 0.064 13.5 0.0 0.12 12.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|529077942|ref|YP_008376945.1| - 0.068 13.3 0.0 0.14 12.2 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator Mga PF05043.8 gi|529077942|ref|YP_008376945.1| - 0.088 13.0 0.0 0.21 11.8 0.0 1.5 1 0 0 1 1 1 0 Mga helix-turn-helix domain HTH_9 PF08221.6 gi|529077942|ref|YP_008376945.1| - 0.11 12.4 0.0 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Gln-synt_C PF00120.19 gi|529077943|ref|YP_008376946.1| - 9.4e-104 346.1 0.0 1.7e-103 345.3 0.0 1.4 2 0 0 2 2 2 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|529077943|ref|YP_008376946.1| - 9.7e-29 98.7 0.9 1.9e-28 97.8 0.1 1.9 2 0 0 2 2 2 1 Glutamine synthetase, beta-Grasp domain PAP2 PF01569.16 gi|529077944|ref|YP_008376947.1| - 1.1e-15 57.3 4.2 1.1e-15 57.3 2.9 2.4 3 0 0 3 3 3 1 PAP2 superfamily Virul_fac_BrkB PF03631.10 gi|529077945|ref|YP_008376948.1| - 4.7e-43 147.4 27.6 4.7e-43 147.4 19.1 2.0 2 0 0 2 2 2 1 Virulence factor BrkB DUF1192 PF06698.6 gi|529077945|ref|YP_008376948.1| - 0.016 14.9 1.1 0.039 13.7 0.8 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1192) ADH_zinc_N PF00107.21 gi|529077947|ref|YP_008376950.1| - 2.1e-16 59.6 0.2 3.4e-16 58.9 0.1 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|529077947|ref|YP_008376950.1| - 5.1e-10 40.3 0.1 9.7e-10 39.4 0.1 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase PQQ_3 PF13570.1 gi|529077948|ref|YP_008376951.1| - 1e-64 213.1 49.8 2.9e-10 40.0 2.0 8.3 8 0 0 8 8 8 8 PQQ-like domain PQQ_2 PF13360.1 gi|529077948|ref|YP_008376951.1| - 8.5e-47 159.6 28.0 8.7e-17 61.3 3.5 4.1 1 1 3 4 4 4 4 PQQ-like domain PQQ PF01011.16 gi|529077948|ref|YP_008376951.1| - 1.2e-42 141.3 27.9 6.2e-07 28.6 0.1 9.9 10 0 0 10 10 10 8 PQQ enzyme repeat DUF4394 PF14339.1 gi|529077948|ref|YP_008376951.1| - 0.0015 17.8 3.8 6.7 5.9 0.0 5.3 1 1 2 5 5 5 1 Domain of unknown function (DUF4394) IgG_binding_B PF01378.12 gi|529077948|ref|YP_008376951.1| - 0.15 11.8 21.2 1.3 8.8 0.3 6.4 5 2 2 7 7 7 0 B domain HrpF PF06266.7 gi|529077948|ref|YP_008376951.1| - 0.35 11.0 2.1 5.7 7.1 0.2 3.6 3 1 2 5 5 5 0 HrpF protein TRM PF02005.11 gi|529077949|ref|YP_008376952.1| - 1.1e-94 317.4 0.0 1.3e-94 317.2 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase MTS PF05175.9 gi|529077949|ref|YP_008376952.1| - 2.3e-07 30.3 0.1 9.5e-07 28.3 0.1 2.0 2 1 0 2 2 2 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|529077949|ref|YP_008376952.1| - 0.00022 20.8 0.0 0.00036 20.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|529077949|ref|YP_008376952.1| - 0.0025 17.8 2.9 0.0025 17.8 2.0 2.0 2 1 0 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|529077949|ref|YP_008376952.1| - 0.0052 16.2 0.0 0.0082 15.5 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 PrmA PF06325.8 gi|529077949|ref|YP_008376952.1| - 0.015 14.4 0.1 0.023 13.8 0.1 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Zn-ribbon_8 PF09723.5 gi|529077949|ref|YP_008376952.1| - 0.017 15.0 1.9 0.041 13.8 1.3 1.7 1 0 0 1 1 1 0 Zinc ribbon domain Methyltransf_18 PF12847.2 gi|529077949|ref|YP_008376952.1| - 0.025 15.1 0.6 0.097 13.2 0.4 2.1 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.1 gi|529077949|ref|YP_008376952.1| - 0.03 14.6 0.0 0.088 13.1 0.0 1.9 1 0 0 1 1 1 0 Methyltransferase domain zinc_ribbon_2 PF13240.1 gi|529077949|ref|YP_008376952.1| - 0.71 9.4 7.1 0.1 12.1 0.5 2.6 3 0 0 3 3 3 0 zinc-ribbon domain SWIM PF04434.12 gi|529077950|ref|YP_008376953.1| - 0.00064 19.1 2.7 0.006 16.0 1.9 2.1 1 1 0 1 1 1 1 SWIM zinc finger TAT_signal PF10518.4 gi|529077951|ref|YP_008376954.1| - 0.083 12.9 0.8 0.23 11.5 0.6 1.8 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence PT PF04886.7 gi|529077951|ref|YP_008376954.1| - 3.5 7.0 18.9 7.1 6.0 13.1 1.5 1 0 0 1 1 1 0 PT repeat PALP PF00291.20 gi|529077952|ref|YP_008376955.1| - 1.3e-76 257.7 9.9 1.6e-76 257.4 6.8 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT_4 PF13291.1 gi|529077952|ref|YP_008376955.1| - 2.1e-05 24.7 0.0 6e-05 23.2 0.0 1.7 1 0 0 1 1 1 1 ACT domain ACT PF01842.20 gi|529077952|ref|YP_008376955.1| - 0.0017 17.8 0.2 0.0054 16.2 0.1 1.9 1 0 0 1 1 1 1 ACT domain Aldo_ket_red PF00248.16 gi|529077953|ref|YP_008376956.1| - 6e-64 215.5 0.0 7.7e-64 215.2 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family Citrate_synt PF00285.16 gi|529077954|ref|YP_008376957.1| - 5.4e-131 436.5 0.1 6.1e-131 436.3 0.1 1.0 1 0 0 1 1 1 1 Citrate synthase TrkA_C PF02080.16 gi|529077955|ref|YP_008376958.1| - 5.7e-32 109.1 1.9 1e-18 66.6 0.0 3.0 2 1 1 3 3 3 2 TrkA-C domain PhoU PF01895.14 gi|529077955|ref|YP_008376958.1| - 3.8e-14 52.8 11.0 5.2e-08 33.2 0.9 3.0 3 1 0 3 3 3 2 PhoU domain PhoU_div PF01865.11 gi|529077955|ref|YP_008376958.1| - 0.00071 18.8 1.0 0.74 8.9 0.1 2.4 2 1 0 2 2 2 2 Protein of unknown function DUF47 Reticulon PF02453.12 gi|529077956|ref|YP_008376959.1| - 0.0016 18.0 0.1 0.0018 17.8 0.1 1.1 1 0 0 1 1 1 1 Reticulon FA_desaturase PF00487.19 gi|529077956|ref|YP_008376959.1| - 0.041 13.3 0.0 0.043 13.2 0.0 1.0 1 0 0 1 1 1 0 Fatty acid desaturase CoA_transf_3 PF02515.12 gi|529077956|ref|YP_008376959.1| - 0.12 11.5 1.6 0.15 11.2 0.6 1.4 1 1 1 2 2 2 0 CoA-transferase family III DUF2933 PF11666.3 gi|529077956|ref|YP_008376959.1| - 0.39 10.2 2.7 0.45 10.0 1.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2933) Trep_Strep PF09605.5 gi|529077956|ref|YP_008376959.1| - 0.46 10.1 5.7 0.54 9.8 4.0 1.1 1 0 0 1 1 1 0 Hypothetical bacterial integral membrane protein (Trep_Strep) HisG PF01634.13 gi|529077957|ref|YP_008376960.1| - 2.4e-47 160.5 0.1 3.6e-47 159.9 0.1 1.2 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.6 gi|529077957|ref|YP_008376960.1| - 3.4e-26 90.9 0.2 6e-26 90.1 0.1 1.4 1 0 0 1 1 1 1 HisG, C-terminal domain NMT1 PF09084.6 gi|529077957|ref|YP_008376960.1| - 0.00076 19.1 0.0 0.0012 18.5 0.0 1.3 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|529077957|ref|YP_008376960.1| - 0.022 14.1 0.2 0.039 13.3 0.1 1.7 1 1 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein HATPase_c PF02518.21 gi|529077958|ref|YP_008376961.1| - 1.6e-19 69.6 0.1 2.6e-19 68.9 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|529077958|ref|YP_008376961.1| - 1.5e-11 44.0 3.9 2.2e-11 43.5 1.3 2.5 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|529077958|ref|YP_008376961.1| - 1e-05 25.4 0.2 4.5e-05 23.4 0.1 2.2 1 1 0 1 1 1 1 PAS fold HATPase_c_3 PF13589.1 gi|529077958|ref|YP_008376961.1| - 0.00052 19.6 0.0 0.00099 18.7 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|529077958|ref|YP_008376961.1| - 0.0019 17.9 0.2 0.0089 15.8 0.0 2.2 2 0 0 2 2 2 1 PAS domain PAS_10 PF13596.1 gi|529077958|ref|YP_008376961.1| - 0.014 15.6 0.0 0.04 14.2 0.0 1.8 1 0 0 1 1 1 0 PAS domain PAS PF00989.19 gi|529077958|ref|YP_008376961.1| - 0.021 14.5 0.0 0.21 11.3 0.0 2.5 2 0 0 2 2 2 0 PAS fold PAS_9 PF13426.1 gi|529077958|ref|YP_008376961.1| - 0.022 15.1 0.0 0.19 12.1 0.0 2.5 2 1 0 2 2 2 0 PAS domain PSD2 PF07624.6 gi|529077958|ref|YP_008376961.1| - 0.04 13.5 0.4 3 7.5 0.1 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF1585) LUC7 PF03194.10 gi|529077958|ref|YP_008376961.1| - 0.048 13.1 0.3 0.088 12.3 0.2 1.3 1 0 0 1 1 1 0 LUC7 N_terminus RHH_1 PF01402.16 gi|529077959|ref|YP_008376962.1| - 2.7e-06 27.0 0.2 3.5e-06 26.6 0.2 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family ParG PF09274.5 gi|529077959|ref|YP_008376962.1| - 0.04 13.8 0.6 0.073 13.0 0.4 1.6 1 1 0 1 1 1 0 ParG DUF1488 PF07369.6 gi|529077959|ref|YP_008376962.1| - 0.084 12.7 1.4 0.11 12.2 1.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1488) NTR2 PF15458.1 gi|529077959|ref|YP_008376962.1| - 0.3 10.2 3.5 0.29 10.3 2.4 1.0 1 0 0 1 1 1 0 Nineteen complex-related protein 2 Amidohydro_1 PF01979.15 gi|529077960|ref|YP_008376963.1| - 7.2e-47 160.6 2.9 9.3e-47 160.2 2.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|529077960|ref|YP_008376963.1| - 4.6e-14 53.1 13.0 2e-13 51.0 9.0 2.0 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|529077960|ref|YP_008376963.1| - 1.2e-08 34.6 0.1 3.7e-08 33.0 0.1 1.9 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|529077960|ref|YP_008376963.1| - 4.3e-08 32.7 18.3 3.3e-07 29.8 5.9 3.3 2 1 0 3 3 3 2 Amidohydrolase family A_deaminase PF00962.17 gi|529077960|ref|YP_008376963.1| - 2e-05 23.7 0.0 7.1e-05 21.8 0.0 1.8 2 0 0 2 2 2 1 Adenosine/AMP deaminase YtkA PF13115.1 gi|529077961|ref|YP_008376964.1| - 2.1 8.7 8.6 0.54 10.6 1.3 2.6 1 1 1 2 2 2 0 YtkA-like AdoHcyase PF05221.12 gi|529077962|ref|YP_008376965.1| - 1.8e-51 174.6 0.0 2.3e-51 174.3 0.0 1.1 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|529077962|ref|YP_008376965.1| - 7.8e-49 165.6 1.3 9.3e-49 165.3 0.2 1.6 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|529077962|ref|YP_008376965.1| - 3.7e-13 49.0 0.2 6.7e-13 48.1 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|529077962|ref|YP_008376965.1| - 2.5e-08 33.4 0.2 5.9e-08 32.2 0.2 1.6 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain AlaDh_PNT_C PF01262.16 gi|529077962|ref|YP_008376965.1| - 0.0003 20.3 0.8 0.0019 17.7 0.4 2.1 1 1 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.13 gi|529077962|ref|YP_008376965.1| - 0.00067 19.6 0.1 0.0019 18.1 0.1 1.8 1 0 0 1 1 1 1 TrkA-N domain ELFV_dehydrog PF00208.16 gi|529077962|ref|YP_008376965.1| - 0.0031 17.1 0.2 0.008 15.7 0.1 1.7 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NIF3 PF01784.13 gi|529077962|ref|YP_008376965.1| - 0.069 12.7 0.4 1.2 8.6 0.1 2.5 2 1 0 2 2 2 0 NIF3 (NGG1p interacting factor 3) HATPase_c PF02518.21 gi|529077963|ref|YP_008376966.1| - 5.6e-21 74.3 0.0 1.2e-20 73.2 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|529077963|ref|YP_008376966.1| - 3e-16 59.1 2.5 4e-16 58.7 0.5 2.3 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.20 gi|529077963|ref|YP_008376966.1| - 4.8e-11 42.6 3.6 4.8e-11 42.6 2.5 3.6 3 0 0 3 3 3 1 HAMP domain HATPase_c_3 PF13589.1 gi|529077963|ref|YP_008376966.1| - 0.0023 17.6 0.0 0.0049 16.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IncA PF04156.9 gi|529077963|ref|YP_008376966.1| - 0.016 14.7 0.1 0.016 14.7 0.0 2.2 2 0 0 2 2 2 0 IncA protein Cep57_CLD_2 PF14197.1 gi|529077963|ref|YP_008376966.1| - 0.52 10.2 4.3 0.25 11.3 0.8 2.1 2 0 0 2 2 2 0 Centrosome localisation domain of PPC89 DUF1083 PF06452.6 gi|529077964|ref|YP_008376967.1| - 1.9e-32 112.6 1.1 3.5e-32 111.7 0.8 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1083) Cellulase PF00150.13 gi|529077964|ref|YP_008376967.1| - 9.8e-25 87.2 0.3 2.6e-24 85.9 0.2 1.7 1 1 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) fn3 PF00041.16 gi|529077964|ref|YP_008376967.1| - 2.1e-08 34.2 0.2 5e-08 32.9 0.1 1.7 1 0 0 1 1 1 1 Fibronectin type III domain HATPase_c PF02518.21 gi|529077965|ref|YP_008376968.1| - 5.6e-16 58.2 0.1 9.3e-16 57.5 0.1 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|529077965|ref|YP_008376968.1| - 1.9e-14 53.6 0.0 4e-14 52.5 0.0 1.6 1 0 0 1 1 1 1 PAS fold HisKA PF00512.20 gi|529077965|ref|YP_008376968.1| - 4.1e-13 49.1 0.7 4.1e-13 49.1 0.5 2.1 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain Response_reg PF00072.19 gi|529077965|ref|YP_008376968.1| - 1.1e-11 44.7 0.0 4e-11 42.9 0.0 2.0 2 0 0 2 2 2 1 Response regulator receiver domain OKR_DC_1_N PF03709.10 gi|529077965|ref|YP_008376968.1| - 0.034 14.1 0.0 0.23 11.5 0.0 2.3 2 0 0 2 2 2 0 Orn/Lys/Arg decarboxylase, N-terminal domain TBCA PF02970.11 gi|529077965|ref|YP_008376968.1| - 0.046 13.8 1.8 0.12 12.4 1.1 1.8 1 1 0 1 1 1 0 Tubulin binding cofactor A Ham1p_like PF01725.11 gi|529077966|ref|YP_008376969.1| - 4.3e-46 156.6 0.0 5.1e-46 156.4 0.0 1.1 1 0 0 1 1 1 1 Ham1 family CBS PF00571.23 gi|529077968|ref|YP_008376971.1| - 9.8e-28 95.6 3.0 3e-13 49.3 0.1 2.3 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.17 gi|529077968|ref|YP_008376971.1| - 4.8e-20 71.3 12.7 5.7e-15 54.7 4.4 2.4 1 1 1 2 2 2 2 Peptidase family M50 Acetyltransf_10 PF13673.1 gi|529077968|ref|YP_008376971.1| - 0.022 14.8 0.0 3.1 7.9 0.0 2.9 2 1 1 3 3 3 0 Acetyltransferase (GNAT) domain Peptidase_MA_2 PF13485.1 gi|529077968|ref|YP_008376971.1| - 0.067 13.2 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 Peptidase MA superfamily 2_5_RNA_ligase2 PF13563.1 gi|529077969|ref|YP_008376972.1| - 1.5e-17 63.6 0.0 2e-17 63.3 0.0 1.3 1 1 0 1 1 1 1 2'-5' RNA ligase superfamily LigT_PEase PF02834.11 gi|529077969|ref|YP_008376972.1| - 1.3e-09 37.9 0.1 0.00087 19.2 0.0 2.6 2 1 0 2 2 2 2 LigT like Phosphoesterase AKAP7_NLS PF10469.4 gi|529077969|ref|YP_008376972.1| - 5.5e-07 29.4 0.0 6.8e-07 29.1 0.0 1.1 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain TcpE PF12648.2 gi|529077970|ref|YP_008376973.1| - 0.72 10.0 3.4 0.85 9.8 2.3 1.2 1 0 0 1 1 1 0 TcpE family DUF4282 PF14110.1 gi|529077970|ref|YP_008376973.1| - 1.6 8.9 6.7 2.1 8.5 4.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) Gate PF07670.9 gi|529077970|ref|YP_008376973.1| - 9 6.2 8.4 0.87 9.5 1.7 1.8 1 1 1 2 2 2 0 Nucleoside recognition Arginosuc_synth PF00764.14 gi|529077971|ref|YP_008376974.1| - 3.1e-144 480.7 0.0 3.6e-144 480.5 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase Asn_synthase PF00733.16 gi|529077971|ref|YP_008376974.1| - 3.3e-06 26.7 0.0 5.5e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|529077971|ref|YP_008376974.1| - 6.7e-05 22.2 0.0 0.00011 21.5 0.0 1.4 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC NAD_synthase PF02540.12 gi|529077971|ref|YP_008376974.1| - 0.00039 19.4 0.0 0.00057 18.8 0.0 1.2 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|529077971|ref|YP_008376974.1| - 0.0024 16.4 0.0 0.004 15.7 0.0 1.3 1 0 0 1 1 1 1 tRNA methyl transferase Rib PF08428.5 gi|529077971|ref|YP_008376974.1| - 0.15 11.8 1.0 0.42 10.3 0.1 2.2 2 0 0 2 2 2 0 Rib/alpha-like repeat Lyase_1 PF00206.15 gi|529077972|ref|YP_008376975.1| - 3.2e-52 177.6 0.6 7.6e-52 176.4 0.0 1.8 2 0 0 2 2 2 1 Lyase ASL_C2 PF14698.1 gi|529077972|ref|YP_008376975.1| - 7.8e-13 48.2 1.6 2.4e-12 46.7 1.1 1.9 1 0 0 1 1 1 1 Argininosuccinate lyase C-terminal RimK PF08443.6 gi|529077974|ref|YP_008376977.1| - 1.2e-36 125.9 0.0 1.8e-33 115.6 0.0 2.2 2 0 0 2 2 2 2 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|529077974|ref|YP_008376977.1| - 6.9e-18 65.0 0.0 1.1e-17 64.3 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.11 gi|529077974|ref|YP_008376977.1| - 5.3e-10 38.7 0.0 7.4e-10 38.2 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.9 gi|529077974|ref|YP_008376977.1| - 1.1e-08 35.1 0.0 1.5e-08 34.6 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|529077974|ref|YP_008376977.1| - 4.4e-08 32.2 0.0 6.5e-08 31.6 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D2 PF02786.12 gi|529077974|ref|YP_008376977.1| - 1.6e-06 27.6 0.0 2.1e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.17 gi|529077974|ref|YP_008376977.1| - 4.4e-05 22.8 0.0 0.00075 18.8 0.0 2.3 2 0 0 2 2 2 1 ATP-grasp domain ATP-grasp_5 PF13549.1 gi|529077974|ref|YP_008376977.1| - 0.00012 21.3 0.0 0.0013 18.0 0.0 2.4 1 1 1 2 2 2 1 ATP-grasp domain Semialdhyde_dh PF01118.19 gi|529077975|ref|YP_008376978.1| - 1e-30 106.5 0.0 1.9e-30 105.6 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|529077975|ref|YP_008376978.1| - 2.1e-07 30.9 0.0 3.9e-07 30.1 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.15 gi|529077975|ref|YP_008376978.1| - 0.0018 18.1 0.0 0.0042 17.0 0.0 1.6 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_10 PF13460.1 gi|529077975|ref|YP_008376978.1| - 0.053 13.5 0.0 0.3 11.0 0.0 2.1 2 1 0 2 2 2 0 NADH(P)-binding AA_kinase PF00696.23 gi|529077976|ref|YP_008376979.1| - 2.8e-26 92.5 0.3 6.5e-26 91.3 0.2 1.5 1 1 0 1 1 1 1 Amino acid kinase family Aminotran_3 PF00202.16 gi|529077977|ref|YP_008376980.1| - 2.6e-95 319.1 0.1 3.1e-95 318.8 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Beta_elim_lyase PF01212.16 gi|529077977|ref|YP_008376980.1| - 0.054 12.6 0.0 0.088 11.9 0.0 1.3 1 0 0 1 1 1 0 Beta-eliminating lyase Peptidase_M20 PF01546.23 gi|529077978|ref|YP_008376981.1| - 1.2e-24 86.8 0.1 1.9e-24 86.2 0.1 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|529077978|ref|YP_008376981.1| - 3.2e-07 30.0 0.0 5.7e-07 29.2 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain OTCace_N PF02729.16 gi|529077979|ref|YP_008376982.1| - 1.1e-48 164.5 0.0 2.3e-48 163.4 0.0 1.5 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|529077979|ref|YP_008376982.1| - 2.4e-44 150.9 0.0 9.1e-44 149.1 0.0 1.8 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PALP PF00291.20 gi|529077981|ref|YP_008376984.1| - 2.5e-66 223.9 1.2 2.9e-66 223.7 0.8 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme C1_2 PF03107.11 gi|529077981|ref|YP_008376984.1| - 0.14 12.3 1.3 0.25 11.4 0.9 1.4 1 0 0 1 1 1 0 C1 domain 2-Hacid_dh_C PF02826.14 gi|529077982|ref|YP_008376985.1| - 8.5e-33 112.9 0.0 1.4e-32 112.2 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|529077982|ref|YP_008376985.1| - 8.2e-22 77.1 1.0 1.4e-21 76.3 0.7 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACT PF01842.20 gi|529077982|ref|YP_008376985.1| - 0.00018 20.9 5.5 0.011 15.1 0.1 4.1 4 0 0 4 4 4 2 ACT domain CBS PF00571.23 gi|529077984|ref|YP_008376987.1| - 2.1e-32 110.6 15.0 4.4e-09 35.9 0.2 4.2 4 0 0 4 4 4 4 CBS domain tRNA-synt_2b PF00587.20 gi|529077985|ref|YP_008376988.1| - 2e-52 177.2 0.0 2.8e-52 176.7 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|529077985|ref|YP_008376988.1| - 1.7e-21 75.9 0.0 3.9e-21 74.7 0.0 1.7 1 0 0 1 1 1 1 Anticodon binding domain zf-ribbon_3 PF13248.1 gi|529077985|ref|YP_008376988.1| - 0.019 14.1 4.0 0.3 10.3 2.8 2.3 1 1 1 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|529077985|ref|YP_008376988.1| - 0.024 14.6 0.2 2.7 8.0 0.0 2.5 2 0 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|529077985|ref|YP_008376988.1| - 0.31 10.5 2.7 5 6.7 0.4 2.4 2 0 0 2 2 2 0 zinc-ribbon domain ERCC4 PF02732.10 gi|529077987|ref|YP_008376990.1| - 1.2e-21 76.9 0.2 4.1e-21 75.2 0.0 2.1 2 1 0 2 2 2 1 ERCC4 domain Helicase_C PF00271.26 gi|529077987|ref|YP_008376990.1| - 6e-19 67.6 0.0 2.1e-18 65.9 0.0 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|529077987|ref|YP_008376990.1| - 8.6e-15 54.6 0.0 2.3e-14 53.2 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase HHH_2 PF12826.2 gi|529077987|ref|YP_008376990.1| - 7.1e-11 41.8 0.4 2.6e-10 40.0 0.2 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|529077987|ref|YP_008376990.1| - 3.2e-10 40.0 0.1 1.8e-09 37.6 0.1 2.3 1 0 0 1 1 1 1 Helix-hairpin-helix domain ResIII PF04851.10 gi|529077987|ref|YP_008376990.1| - 4.3e-09 36.4 0.0 1.3e-08 34.9 0.0 1.9 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH PF00633.18 gi|529077987|ref|YP_008376990.1| - 2.4e-08 33.2 0.5 5.7e-05 22.5 0.1 3.1 2 0 0 2 2 2 2 Helix-hairpin-helix motif 5_3_exonuc PF01367.15 gi|529077987|ref|YP_008376990.1| - 0.0084 16.3 0.1 0.043 14.0 0.0 2.3 2 0 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold Helicase_C_2 PF13307.1 gi|529077987|ref|YP_008376990.1| - 0.059 13.3 0.0 0.15 11.9 0.0 1.6 1 0 0 1 1 1 0 Helicase C-terminal domain DUF4404 PF14357.1 gi|529077987|ref|YP_008376990.1| - 0.11 12.8 0.2 0.11 12.8 0.2 4.4 3 1 1 4 4 4 0 Domain of unknown function (DUF4404) Bactofilin PF04519.8 gi|529077989|ref|YP_008376992.1| - 1.6e-11 44.0 3.9 6.9e-09 35.6 0.1 3.1 2 1 1 3 3 3 2 Polymer-forming cytoskeletal Hexapep PF00132.19 gi|529077989|ref|YP_008376992.1| - 4.5e-07 29.0 8.2 0.016 14.6 0.0 5.6 4 3 1 5 5 5 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|529077989|ref|YP_008376992.1| - 0.14 11.7 8.6 0.89 9.1 0.0 4.2 5 1 0 5 5 5 0 Hexapeptide repeat of succinyl-transferase MCPsignal PF00015.16 gi|529077990|ref|YP_008376993.1| - 1.1e-43 149.2 54.3 6.8e-41 140.1 19.8 3.0 2 1 1 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.6 gi|529077990|ref|YP_008376993.1| - 1e-06 28.4 24.3 0.21 11.4 0.0 5.5 3 2 3 6 6 6 3 Bacterial protein of unknown function (DUF948) Laminin_I PF06008.9 gi|529077990|ref|YP_008376993.1| - 3.6e-05 23.2 26.2 6.6e-05 22.3 4.8 4.0 3 2 1 4 4 4 3 Laminin Domain I TPR_MLP1_2 PF07926.7 gi|529077990|ref|YP_008376993.1| - 0.0001 22.0 26.6 0.16 11.6 5.3 3.8 3 2 0 3 3 3 3 TPR/MLP1/MLP2-like protein DUF1664 PF07889.7 gi|529077990|ref|YP_008376993.1| - 0.00013 21.7 26.7 0.0076 16.0 1.8 5.1 2 1 2 5 5 5 2 Protein of unknown function (DUF1664) Laminin_II PF06009.7 gi|529077990|ref|YP_008376993.1| - 0.00039 20.1 29.3 0.0023 17.6 4.3 4.7 3 2 2 5 5 5 1 Laminin Domain II IncA PF04156.9 gi|529077990|ref|YP_008376993.1| - 0.001 18.7 24.0 0.067 12.7 0.5 4.3 2 1 2 4 4 4 2 IncA protein AAA_13 PF13166.1 gi|529077990|ref|YP_008376993.1| - 0.0017 16.9 26.9 0.0099 14.3 11.3 3.1 2 1 1 3 3 3 1 AAA domain Baculo_PEP_C PF04513.7 gi|529077990|ref|YP_008376993.1| - 0.0026 17.6 19.0 0.031 14.0 1.3 4.5 2 1 1 4 4 4 2 Baculovirus polyhedron envelope protein, PEP, C terminus DUF972 PF06156.8 gi|529077990|ref|YP_008376993.1| - 0.0058 16.9 19.4 5.3 7.4 1.1 5.2 2 1 1 4 4 4 0 Protein of unknown function (DUF972) NPV_P10 PF05531.7 gi|529077990|ref|YP_008376993.1| - 0.006 16.8 27.6 0.36 11.1 0.6 5.4 4 1 1 5 5 5 2 Nucleopolyhedrovirus P10 protein Sec5 PF15469.1 gi|529077990|ref|YP_008376993.1| - 0.0066 16.2 7.3 0.0094 15.6 4.1 1.9 1 1 0 1 1 1 1 Exocyst complex component Sec5 RasGAP_C PF03836.10 gi|529077990|ref|YP_008376993.1| - 0.017 14.7 6.1 8.1 6.1 0.8 3.5 3 0 0 3 3 3 0 RasGAP C-terminus DUF4140 PF13600.1 gi|529077990|ref|YP_008376993.1| - 0.025 15.0 0.3 0.025 15.0 0.2 4.9 3 2 2 5 5 5 0 N-terminal domain of unknown function (DUF4140) Prefoldin_2 PF01920.15 gi|529077990|ref|YP_008376993.1| - 0.071 12.8 20.7 1.8 8.3 4.2 4.2 3 2 0 3 3 3 0 Prefoldin subunit HAMP PF00672.20 gi|529077990|ref|YP_008376993.1| - 0.074 13.2 0.2 0.074 13.2 0.1 4.8 5 1 0 5 5 3 0 HAMP domain BLOC1_2 PF10046.4 gi|529077990|ref|YP_008376993.1| - 0.077 13.1 0.6 0.077 13.1 0.4 5.2 3 2 2 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 EzrA PF06160.7 gi|529077990|ref|YP_008376993.1| - 0.1 10.7 29.8 0.1 10.7 8.1 3.0 2 1 1 3 3 3 0 Septation ring formation regulator, EzrA DivIC PF04977.10 gi|529077990|ref|YP_008376993.1| - 0.18 11.3 0.0 0.18 11.3 0.0 4.6 5 1 0 5 5 5 0 Septum formation initiator RmuC PF02646.11 gi|529077990|ref|YP_008376993.1| - 0.3 9.8 16.7 0.31 9.8 1.5 3.9 3 1 1 4 4 4 0 RmuC family ATG_C PF09333.6 gi|529077990|ref|YP_008376993.1| - 0.4 10.8 9.1 10 6.3 0.6 4.1 2 1 1 3 3 3 0 ATG C terminal domain GLE1 PF07817.8 gi|529077990|ref|YP_008376993.1| - 0.44 9.4 6.2 0.6 9.0 1.1 2.4 2 0 0 2 2 2 0 GLE1-like protein Mnd1 PF03962.10 gi|529077990|ref|YP_008376993.1| - 0.45 10.1 24.0 3.8 7.1 3.8 3.6 2 1 2 4 4 4 0 Mnd1 family LOH1CR12 PF10158.4 gi|529077990|ref|YP_008376993.1| - 0.45 10.3 11.2 4.2 7.1 0.8 3.9 3 2 1 4 4 4 0 Tumour suppressor protein CorA PF01544.13 gi|529077990|ref|YP_008376993.1| - 0.5 9.3 17.2 0.55 9.2 1.9 3.1 1 1 1 3 3 3 0 CorA-like Mg2+ transporter protein Barstar PF01337.13 gi|529077990|ref|YP_008376993.1| - 0.66 9.8 11.7 1.5 8.7 0.0 5.2 4 2 2 6 6 5 0 Barstar (barnase inhibitor) Mod_r PF07200.8 gi|529077990|ref|YP_008376993.1| - 0.89 9.4 19.5 0.65 9.8 3.5 4.0 3 2 1 4 4 4 0 Modifier of rudimentary (Mod(r)) protein Muted PF14942.1 gi|529077990|ref|YP_008376993.1| - 0.92 9.3 21.2 1 9.2 3.1 3.1 3 0 0 3 3 3 0 Organelle biogenesis, Muted-like protein Cauli_AT PF03233.8 gi|529077990|ref|YP_008376993.1| - 1 9.0 10.9 14 5.3 1.1 4.1 2 1 3 5 5 5 0 Aphid transmission protein DUF651 PF04895.7 gi|529077990|ref|YP_008376993.1| - 1.1 8.9 8.2 7.6 6.2 0.2 3.7 3 1 0 3 3 3 0 Archaeal protein of unknown function (DUF651) DUF4546 PF15079.1 gi|529077990|ref|YP_008376993.1| - 1.1 8.3 7.3 4 6.5 0.3 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4546) Seryl_tRNA_N PF02403.17 gi|529077990|ref|YP_008376993.1| - 1.2 9.2 26.1 3.1 7.8 4.5 5.3 2 1 4 6 6 6 0 Seryl-tRNA synthetase N-terminal domain DUF2580 PF10824.3 gi|529077990|ref|YP_008376993.1| - 1.2 9.5 35.8 0.039 14.2 1.7 5.5 3 2 2 5 5 5 0 Protein of unknown function (DUF2580) Fib_alpha PF08702.5 gi|529077990|ref|YP_008376993.1| - 1.2 9.2 22.4 0.81 9.8 0.7 4.4 2 1 1 4 4 4 0 Fibrinogen alpha/beta chain family APG6 PF04111.7 gi|529077990|ref|YP_008376993.1| - 1.4 7.9 27.2 5.8 5.8 5.3 3.4 2 1 0 3 3 3 0 Autophagy protein Apg6 V_ATPase_I PF01496.14 gi|529077990|ref|YP_008376993.1| - 1.4 6.6 21.3 1.1 7.0 5.4 2.6 2 1 1 3 3 3 0 V-type ATPase 116kDa subunit family IFT57 PF10498.4 gi|529077990|ref|YP_008376993.1| - 1.5 7.4 21.6 0.3 9.7 0.7 3.1 1 1 2 3 3 3 0 Intra-flagellar transport protein 57 Reo_sigmaC PF04582.7 gi|529077990|ref|YP_008376993.1| - 2.9 6.9 31.9 0.81 8.7 2.1 4.4 2 1 2 4 4 4 0 Reovirus sigma C capsid protein DUF904 PF06005.7 gi|529077990|ref|YP_008376993.1| - 3.6 7.9 8.5 2.5 8.4 0.0 3.6 3 1 0 3 3 3 0 Protein of unknown function (DUF904) TMPIT PF07851.8 gi|529077990|ref|YP_008376993.1| - 4.2 6.3 13.0 1.8 7.5 0.6 2.7 2 1 1 3 3 3 0 TMPIT-like protein Tup_N PF08581.5 gi|529077990|ref|YP_008376993.1| - 4.6 7.4 10.9 1.3 9.2 0.7 3.4 3 0 0 3 3 2 0 Tup N-terminal Spc7 PF08317.6 gi|529077990|ref|YP_008376993.1| - 5.1 5.6 26.2 2.4 6.7 3.9 3.5 2 1 1 3 3 3 0 Spc7 kinetochore protein APG17 PF04108.7 gi|529077990|ref|YP_008376993.1| - 5.3 5.7 26.7 1.8 7.2 2.0 3.9 2 1 2 4 4 4 0 Autophagy protein Apg17 Nup54 PF13874.1 gi|529077990|ref|YP_008376993.1| - 5.8 6.5 17.0 0.52 9.9 1.9 3.9 3 1 1 4 4 4 0 Nucleoporin complex subunit 54 COG2 PF06148.6 gi|529077990|ref|YP_008376993.1| - 6.8 6.5 23.9 21 5.0 2.0 5.4 3 2 1 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 IFT46_B_C PF12317.3 gi|529077990|ref|YP_008376993.1| - 7.1 5.9 13.0 6.9 5.9 3.6 2.8 1 1 1 2 2 2 0 Intraflagellar transport complex B protein 46 C terminal COG5 PF10392.4 gi|529077990|ref|YP_008376993.1| - 7.5 6.5 13.1 12 5.8 0.6 3.8 2 1 0 3 3 3 0 Golgi transport complex subunit 5 TPP_enzyme_C PF02775.16 gi|529077991|ref|YP_008376994.1| - 3.3e-29 101.4 0.1 5.1e-29 100.8 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.1 gi|529077991|ref|YP_008376994.1| - 0.0023 16.8 0.4 0.016 14.1 0.3 2.0 1 1 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase POR_N PF01855.14 gi|529077992|ref|YP_008376995.1| - 4.2e-68 229.2 0.5 5.6e-68 228.8 0.4 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|529077992|ref|YP_008376995.1| - 0.00014 21.7 0.0 0.0004 20.3 0.0 1.8 1 1 0 1 1 1 1 Transketolase, C-terminal domain Fer4_7 PF12838.2 gi|529077993|ref|YP_008376996.1| - 2.8e-16 59.6 33.3 9.4e-10 38.7 8.3 1.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|529077993|ref|YP_008376996.1| - 1.5e-15 56.0 17.1 1.8e-09 36.7 2.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|529077993|ref|YP_008376996.1| - 9.7e-13 47.7 20.0 8e-10 38.3 7.9 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|529077993|ref|YP_008376996.1| - 1.4e-12 47.2 7.7 1.9e-12 46.8 5.3 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|529077993|ref|YP_008376996.1| - 3e-11 43.4 22.2 6.1e-09 36.0 8.0 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|529077993|ref|YP_008376996.1| - 4.7e-11 41.9 13.4 1.2e-05 24.9 2.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|529077993|ref|YP_008376996.1| - 2.4e-10 39.8 16.4 3.1e-06 26.8 2.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|529077993|ref|YP_008376996.1| - 1.8e-08 34.5 3.4 0.00017 21.8 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|529077993|ref|YP_008376996.1| - 8.4e-08 32.1 30.9 0.0002 21.3 8.4 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|529077993|ref|YP_008376996.1| - 1.7e-07 31.5 10.9 0.00024 21.4 0.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|529077993|ref|YP_008376996.1| - 3e-07 31.0 14.2 2.4e-05 24.9 2.0 2.4 2 1 1 3 3 3 3 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|529077993|ref|YP_008376996.1| - 1.9e-06 28.3 11.0 0.002 18.6 1.4 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|529077993|ref|YP_008376996.1| - 4e-05 23.8 19.1 0.0023 18.3 4.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|529077993|ref|YP_008376996.1| - 6e-05 23.0 14.1 0.03 14.6 2.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|529077993|ref|YP_008376996.1| - 0.00025 21.3 11.4 0.019 15.3 1.6 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain POR PF01558.13 gi|529077994|ref|YP_008376997.1| - 4.9e-41 140.4 0.2 5.7e-41 140.2 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase HAD_2 PF13419.1 gi|529077995|ref|YP_008376998.1| - 8.5e-19 68.4 0.0 1.1e-18 68.1 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|529077995|ref|YP_008376998.1| - 1.6e-12 46.9 0.1 4.2e-12 45.5 0.0 1.7 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|529077995|ref|YP_008376998.1| - 2.9e-09 37.6 0.0 0.00057 20.3 0.0 2.2 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|529077995|ref|YP_008376998.1| - 0.11 12.7 0.0 0.73 9.9 0.0 2.1 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Glyco_hydro_10 PF00331.15 gi|529077996|ref|YP_008376999.1| - 7.7e-91 304.4 0.0 8.6e-91 304.2 0.0 1.0 1 0 0 1 1 1 1 Glycosyl hydrolase family 10 Cellulase-like PF12876.2 gi|529077996|ref|YP_008376999.1| - 0.049 14.0 0.0 0.39 11.1 0.0 2.3 2 0 0 2 2 2 0 Sugar-binding cellulase-like Cellulase PF00150.13 gi|529077996|ref|YP_008376999.1| - 0.059 12.5 0.0 2.3 7.3 0.0 2.3 2 0 0 2 2 2 0 Cellulase (glycosyl hydrolase family 5) Usp PF00582.21 gi|529077996|ref|YP_008376999.1| - 0.21 11.7 0.8 1.5 8.9 0.1 2.2 2 0 0 2 2 2 0 Universal stress protein family PBP PF01161.15 gi|529077997|ref|YP_008377000.1| - 1.3e-33 115.9 0.1 1.4e-33 115.7 0.0 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein PK PF00224.16 gi|529077998|ref|YP_008377001.1| - 2.8e-113 378.0 1.8 4.5e-113 377.3 1.3 1.3 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.11 gi|529077998|ref|YP_008377001.1| - 1.9e-32 111.2 1.7 3.9e-32 110.2 1.2 1.6 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain PEP-utilizers PF00391.18 gi|529077998|ref|YP_008377001.1| - 3.3e-07 29.7 2.3 4.6e-07 29.2 0.2 2.4 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain HpcH_HpaI PF03328.9 gi|529077998|ref|YP_008377001.1| - 0.0075 15.1 0.7 0.021 13.6 0.4 1.9 1 1 1 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family ROK PF00480.15 gi|529077999|ref|YP_008377002.1| - 4.2e-36 124.4 0.6 5.4e-36 124.0 0.4 1.1 1 0 0 1 1 1 1 ROK family BcrAD_BadFG PF01869.15 gi|529077999|ref|YP_008377002.1| - 6.9e-05 22.2 0.1 0.00012 21.5 0.1 1.4 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family FGGY_N PF00370.16 gi|529077999|ref|YP_008377002.1| - 0.0025 17.1 0.0 0.011 15.0 0.0 1.8 1 1 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain AAA_16 PF13191.1 gi|529078000|ref|YP_008377003.1| - 7.5e-12 45.6 0.0 1.9e-11 44.2 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|529078000|ref|YP_008377003.1| - 3.6e-07 30.3 0.0 7e-07 29.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|529078000|ref|YP_008377003.1| - 0.0033 17.1 0.0 0.013 15.2 0.0 2.0 1 0 0 1 1 1 1 Part of AAA domain AAA PF00004.24 gi|529078000|ref|YP_008377003.1| - 0.0079 16.3 0.0 0.014 15.5 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF2075 PF09848.4 gi|529078000|ref|YP_008377003.1| - 0.0099 14.8 0.0 0.045 12.7 0.0 1.9 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_11 PF13086.1 gi|529078000|ref|YP_008377003.1| - 0.085 12.4 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|529078000|ref|YP_008377003.1| - 0.088 12.6 0.0 0.23 11.3 0.0 1.8 1 0 0 1 1 1 0 AAA domain Sigma54_activ_2 PF14532.1 gi|529078000|ref|YP_008377003.1| - 0.1 12.6 0.0 0.22 11.5 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_29 PF13555.1 gi|529078000|ref|YP_008377003.1| - 0.14 11.6 0.0 0.34 10.4 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain RNA_helicase PF00910.17 gi|529078000|ref|YP_008377003.1| - 0.16 12.1 0.0 0.27 11.4 0.0 1.3 1 0 0 1 1 1 0 RNA helicase FGGY_N PF00370.16 gi|529078002|ref|YP_008377005.1| - 9.6e-74 247.7 0.0 1.5e-73 247.1 0.0 1.3 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.11 gi|529078002|ref|YP_008377005.1| - 3.5e-56 189.9 2.1 5.4e-56 189.3 0.6 1.8 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.15 gi|529078002|ref|YP_008377005.1| - 7.2e-06 25.5 0.3 0.0011 18.3 0.0 2.2 2 0 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family DAO PF01266.19 gi|529078003|ref|YP_008377006.1| - 1.4e-57 195.2 1.4 2.2e-57 194.6 1.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Fer2_BFD PF04324.10 gi|529078003|ref|YP_008377006.1| - 2.8e-08 33.6 1.2 7.7e-08 32.2 0.9 1.8 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain Pyr_redox_2 PF07992.9 gi|529078003|ref|YP_008377006.1| - 3.1e-07 30.4 0.0 4.5e-05 23.4 0.0 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|529078003|ref|YP_008377006.1| - 8e-06 24.9 5.5 9.9e-05 21.3 3.8 2.1 1 1 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.1 gi|529078003|ref|YP_008377006.1| - 0.002 18.1 0.8 0.014 15.3 0.6 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.13 gi|529078003|ref|YP_008377006.1| - 0.002 17.7 0.3 0.0035 16.9 0.2 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_oxidored PF12831.2 gi|529078003|ref|YP_008377006.1| - 0.0062 15.6 3.6 0.0077 15.3 2.0 1.7 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|529078003|ref|YP_008377006.1| - 0.01 14.8 0.6 0.057 12.4 0.0 2.0 2 0 0 2 2 2 0 FAD binding domain HI0933_like PF03486.9 gi|529078003|ref|YP_008377006.1| - 0.015 13.7 0.2 0.023 13.1 0.1 1.2 1 0 0 1 1 1 0 HI0933-like protein Pyr_redox PF00070.22 gi|529078003|ref|YP_008377006.1| - 0.017 15.4 0.9 0.061 13.7 0.6 2.0 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase DUF3606 PF12244.3 gi|529078003|ref|YP_008377006.1| - 0.13 11.8 0.2 0.35 10.5 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3606) GIDA PF01134.17 gi|529078003|ref|YP_008377006.1| - 0.19 10.5 1.0 0.33 9.7 0.7 1.3 1 0 0 1 1 1 0 Glucose inhibited division protein A NAD_binding_10 PF13460.1 gi|529078003|ref|YP_008377006.1| - 0.54 10.2 3.8 0.93 9.4 0.6 2.6 3 0 0 3 3 3 0 NADH(P)-binding FAD_binding_2 PF00890.19 gi|529078004|ref|YP_008377007.1| - 6.8e-32 110.8 4.2 8.2e-32 110.5 2.9 1.1 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|529078004|ref|YP_008377007.1| - 4e-06 25.9 0.6 2e-05 23.7 0.2 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|529078004|ref|YP_008377007.1| - 6.1e-05 22.9 3.1 0.00019 21.3 0.1 2.5 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|529078004|ref|YP_008377007.1| - 7.5e-05 21.7 0.4 7.5e-05 21.7 0.3 1.8 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|529078004|ref|YP_008377007.1| - 0.00036 19.7 2.1 0.00071 18.7 1.5 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|529078004|ref|YP_008377007.1| - 0.0033 17.4 0.8 0.0099 15.8 0.5 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|529078004|ref|YP_008377007.1| - 0.0038 17.5 0.3 0.02 15.3 0.2 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|529078004|ref|YP_008377007.1| - 0.0042 15.6 0.5 0.0068 14.9 0.3 1.3 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_3 PF01494.14 gi|529078004|ref|YP_008377007.1| - 0.0071 15.4 1.0 0.011 14.8 0.7 1.2 1 0 0 1 1 1 1 FAD binding domain 3HCDH_N PF02737.13 gi|529078004|ref|YP_008377007.1| - 0.031 13.9 0.4 0.048 13.3 0.3 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|529078004|ref|YP_008377007.1| - 0.033 14.4 0.0 0.084 13.1 0.0 1.7 2 0 0 2 2 2 0 Putative NAD(P)-binding CCG PF02754.11 gi|529078005|ref|YP_008377008.1| - 1.8e-23 82.3 5.1 4.7e-12 45.7 0.1 3.1 3 0 0 3 3 3 2 Cysteine-rich domain Fer4_17 PF13534.1 gi|529078005|ref|YP_008377008.1| - 1.9e-06 28.1 3.2 1.9e-06 28.1 2.2 3.6 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|529078005|ref|YP_008377008.1| - 8.2e-06 25.7 3.8 8.2e-06 25.7 2.7 2.8 3 1 0 3 3 3 1 4Fe-4S dicluster domain zf-CSL PF05207.8 gi|529078005|ref|YP_008377008.1| - 0.001 18.5 7.7 0.02 14.3 0.0 3.6 4 0 0 4 4 4 2 CSL zinc finger Fer4_9 PF13187.1 gi|529078005|ref|YP_008377008.1| - 0.018 15.2 12.3 0.85 9.9 6.8 3.6 3 1 2 5 5 5 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|529078005|ref|YP_008377008.1| - 0.019 15.3 4.4 4.5 7.7 0.3 3.8 3 0 0 3 3 3 0 4Fe-4S dicluster domain DUF3390 PF11870.3 gi|529078005|ref|YP_008377008.1| - 0.067 13.1 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3390) Fer4_10 PF13237.1 gi|529078005|ref|YP_008377008.1| - 0.16 11.7 14.6 0.092 12.5 6.5 3.1 3 1 1 4 4 4 0 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|529078005|ref|YP_008377008.1| - 0.22 11.9 14.2 0.2 12.0 6.2 3.2 3 1 1 4 4 4 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|529078005|ref|YP_008377008.1| - 4.6 7.1 10.2 7.5 6.5 0.1 3.3 4 0 0 4 4 4 0 4Fe-4S dicluster domain PEPcase PF00311.12 gi|529078006|ref|YP_008377009.1| - 3.4e-231 769.3 0.0 4.2e-231 769.0 0.0 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase PEPcase_2 PF14010.1 gi|529078006|ref|YP_008377009.1| - 0.00061 18.2 0.0 0.0011 17.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase HTH_10 PF04967.7 gi|529078007|ref|YP_008377010.1| - 1e-14 53.8 0.1 1.9e-14 52.9 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_30 PF13556.1 gi|529078007|ref|YP_008377010.1| - 0.00013 21.5 0.1 0.0003 20.2 0.1 1.6 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain MarR_2 PF12802.2 gi|529078007|ref|YP_008377010.1| - 0.00028 20.4 0.1 0.00059 19.4 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|529078007|ref|YP_008377010.1| - 0.015 15.1 0.1 0.048 13.4 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_8 PF02954.14 gi|529078007|ref|YP_008377010.1| - 0.015 14.8 0.0 0.034 13.6 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_24 PF13412.1 gi|529078007|ref|YP_008377010.1| - 0.029 13.7 0.0 0.054 12.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|529078007|ref|YP_008377010.1| - 0.042 13.4 0.1 0.21 11.2 0.0 2.2 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_psq PF05225.11 gi|529078007|ref|YP_008377010.1| - 0.044 13.3 1.9 0.054 13.0 0.0 2.1 3 0 0 3 3 3 0 helix-turn-helix, Psq domain HTH_5 PF01022.15 gi|529078007|ref|YP_008377010.1| - 0.061 12.9 0.0 0.14 11.8 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Phage_CI_repr PF07022.8 gi|529078007|ref|YP_008377010.1| - 0.12 12.4 0.0 0.21 11.6 0.0 1.4 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain FG-GAP_2 PF14312.1 gi|529078008|ref|YP_008377011.1| - 5.4e-106 346.4 62.3 5.8e-17 61.4 2.0 7.2 7 0 0 7 7 7 7 FG-GAP repeat E1-E2_ATPase PF00122.15 gi|529078009|ref|YP_008377012.1| - 2.7e-55 186.9 0.1 5.7e-55 185.8 0.1 1.6 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|529078009|ref|YP_008377012.1| - 1.8e-44 152.7 8.8 1.8e-44 152.7 6.1 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|529078009|ref|YP_008377012.1| - 3.9e-14 53.2 0.0 9.9e-14 51.9 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|529078009|ref|YP_008377012.1| - 8.9e-13 48.1 0.0 2.9e-12 46.5 0.0 2.0 1 0 0 1 1 1 1 Heavy-metal-associated domain Hydrolase_3 PF08282.7 gi|529078009|ref|YP_008377012.1| - 0.00072 19.2 0.5 0.0014 18.2 0.3 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Myosin_N PF02736.14 gi|529078009|ref|YP_008377012.1| - 0.075 12.7 1.0 12 5.6 0.0 2.9 2 0 0 2 2 2 0 Myosin N-terminal SH3-like domain PAS_9 PF13426.1 gi|529078010|ref|YP_008377013.1| - 3.3e-46 155.9 0.7 9.2e-17 61.3 0.0 3.4 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.5 gi|529078010|ref|YP_008377013.1| - 9.5e-44 147.9 6.7 3.6e-19 68.8 0.3 3.6 3 0 0 3 3 3 3 PAS fold PAS PF00989.19 gi|529078010|ref|YP_008377013.1| - 2.1e-32 111.2 0.1 4.9e-15 55.2 0.0 3.5 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.1 gi|529078010|ref|YP_008377013.1| - 2e-25 87.6 0.0 5.2e-12 45.1 0.0 3.9 3 0 0 3 3 3 3 PAS domain HATPase_c PF02518.21 gi|529078010|ref|YP_008377013.1| - 1e-16 60.6 0.0 2.1e-16 59.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|529078010|ref|YP_008377013.1| - 3.5e-12 46.2 0.1 4.9e-05 23.3 0.0 3.5 3 0 0 3 3 3 3 PAS fold PAS_7 PF12860.2 gi|529078010|ref|YP_008377013.1| - 1.8e-08 34.4 1.4 0.0061 16.5 0.0 4.2 3 1 0 3 3 3 2 PAS fold HATPase_c_2 PF13581.1 gi|529078010|ref|YP_008377013.1| - 3e-07 30.2 0.0 9.5e-07 28.6 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_10 PF13596.1 gi|529078010|ref|YP_008377013.1| - 8.2e-07 29.2 0.0 8.8e-06 25.9 0.0 2.6 2 0 0 2 2 2 1 PAS domain HATPase_c_3 PF13589.1 gi|529078010|ref|YP_008377013.1| - 0.011 15.3 0.0 0.023 14.3 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|529078010|ref|YP_008377013.1| - 0.064 13.2 0.1 0.064 13.2 0.1 2.7 3 0 0 3 3 2 0 His Kinase A (phospho-acceptor) domain Neuropep_like PF15161.1 gi|529078010|ref|YP_008377013.1| - 0.074 12.5 0.1 0.37 10.3 0.0 2.0 2 0 0 2 2 2 0 Neuropeptide-like PHA-1 PF06542.6 gi|529078010|ref|YP_008377013.1| - 0.3 9.7 0.0 0.48 9.0 0.0 1.2 1 0 0 1 1 1 0 Regulator protein PHA-1 TMP-TENI PF02581.12 gi|529078011|ref|YP_008377014.1| - 3e-60 202.3 2.6 3.6e-60 202.1 1.8 1.0 1 0 0 1 1 1 1 Thiamine monophosphate synthase/TENI ThiG PF05690.9 gi|529078011|ref|YP_008377014.1| - 0.0005 19.2 4.9 0.0005 19.2 3.4 1.6 1 1 1 2 2 2 1 Thiazole biosynthesis protein ThiG NanE PF04131.9 gi|529078011|ref|YP_008377014.1| - 0.0065 15.4 2.9 0.04 12.8 1.3 2.4 2 1 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase DHO_dh PF01180.16 gi|529078011|ref|YP_008377014.1| - 0.015 14.2 1.3 0.022 13.7 0.9 1.2 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase DUF561 PF04481.7 gi|529078011|ref|YP_008377014.1| - 0.041 12.8 0.1 0.093 11.6 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF561) TfuA PF07812.7 gi|529078011|ref|YP_008377014.1| - 0.069 12.5 0.4 0.13 11.7 0.3 1.5 1 0 0 1 1 1 0 TfuA-like protein PcrB PF01884.12 gi|529078011|ref|YP_008377014.1| - 3.2 6.9 8.6 5.3 6.2 1.2 2.7 1 1 2 3 3 3 0 PcrB family DUF123 PF01986.11 gi|529078012|ref|YP_008377015.1| - 2.2e-25 88.6 0.0 2.8e-25 88.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF123 FeoA PF04023.9 gi|529078013|ref|YP_008377016.1| - 9.4e-10 38.3 0.7 1.2e-09 38.0 0.5 1.1 1 0 0 1 1 1 1 FeoA domain FeoB_N PF02421.13 gi|529078014|ref|YP_008377017.1| - 1.1e-49 167.7 0.1 1.6e-49 167.1 0.1 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.9 gi|529078014|ref|YP_008377017.1| - 9.6e-20 70.5 12.2 5.9e-12 45.4 2.5 2.6 2 0 0 2 2 2 2 Nucleoside recognition MMR_HSR1 PF01926.18 gi|529078014|ref|YP_008377017.1| - 6.4e-15 55.1 0.0 1.6e-14 53.8 0.0 1.7 2 0 0 2 2 2 1 50S ribosome-binding GTPase FeoB_C PF07664.7 gi|529078014|ref|YP_008377017.1| - 1.3e-10 40.4 0.2 1.3e-10 40.4 0.1 3.6 4 0 0 4 4 4 1 Ferrous iron transport protein B C terminus AAA_17 PF13207.1 gi|529078014|ref|YP_008377017.1| - 0.031 15.0 0.0 3.5 8.4 0.0 2.5 2 0 0 2 2 2 0 AAA domain GTP_EFTU PF00009.22 gi|529078014|ref|YP_008377017.1| - 0.056 12.8 0.0 0.1 12.0 0.0 1.4 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain Dynamin_N PF00350.18 gi|529078014|ref|YP_008377017.1| - 0.21 11.4 0.0 0.48 10.2 0.0 1.7 1 0 0 1 1 1 0 Dynamin family zinc-ribbons_6 PF07191.7 gi|529078015|ref|YP_008377018.1| - 0.012 15.4 8.4 0.016 15.0 5.8 1.4 1 1 0 1 1 1 0 zinc-ribbons DZR PF12773.2 gi|529078015|ref|YP_008377018.1| - 0.022 14.5 11.8 0.033 14.0 8.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-Mss51 PF13824.1 gi|529078015|ref|YP_008377018.1| - 0.025 14.4 6.5 0.036 13.9 4.5 1.4 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-CXXC PF02008.15 gi|529078015|ref|YP_008377018.1| - 0.027 14.2 6.6 0.027 14.2 4.6 1.9 2 0 0 2 2 2 0 CXXC zinc finger domain zinc_ribbon_2 PF13240.1 gi|529078015|ref|YP_008377018.1| - 0.067 12.7 4.6 0.067 12.7 3.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|529078015|ref|YP_008377018.1| - 0.12 12.0 14.8 0.16 11.6 4.2 2.5 2 1 1 3 3 3 0 Uncharacterised protein family UPF0547 Opy2 PF09463.5 gi|529078015|ref|YP_008377018.1| - 0.82 9.8 15.2 1.2 9.3 6.9 2.2 2 0 0 2 2 2 0 Opy2 protein Rubredoxin PF00301.15 gi|529078015|ref|YP_008377018.1| - 4.5 7.2 9.2 77 3.2 3.5 3.0 2 1 0 2 2 2 0 Rubredoxin Zn_Tnp_IS1595 PF12760.2 gi|529078015|ref|YP_008377018.1| - 6.1 6.7 15.1 0.91 9.3 5.5 2.4 1 1 1 2 2 2 0 Transposase zinc-ribbon domain C1_1 PF00130.17 gi|529078015|ref|YP_008377018.1| - 8.8 6.1 9.5 57 3.5 1.4 2.1 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Rhomboid PF01694.17 gi|529078016|ref|YP_008377019.1| - 9.7e-25 87.2 6.4 9.7e-25 87.2 4.5 1.4 2 0 0 2 2 2 1 Rhomboid family DUF1751 PF08551.5 gi|529078016|ref|YP_008377019.1| - 2e-06 28.0 4.6 2.3e-06 27.8 0.2 2.5 3 0 0 3 3 3 1 Eukaryotic integral membrane protein (DUF1751) URO-D PF01208.12 gi|529078016|ref|YP_008377019.1| - 0.041 12.7 0.1 0.062 12.2 0.1 1.3 1 0 0 1 1 1 0 Uroporphyrinogen decarboxylase (URO-D) DUF457 PF04307.9 gi|529078016|ref|YP_008377019.1| - 7.8 5.8 14.5 0.14 11.4 3.3 2.6 1 1 0 2 2 2 0 Predicted membrane-bound metal-dependent hydrolase (DUF457) RNase_H_2 PF13482.1 gi|529078017|ref|YP_008377020.1| - 3.6e-34 117.9 0.0 4.8e-34 117.5 0.0 1.2 1 0 0 1 1 1 1 RNase_H superfamily HHH_5 PF14520.1 gi|529078017|ref|YP_008377020.1| - 0.0012 18.9 0.0 0.013 15.6 0.0 2.6 3 1 0 3 3 3 1 Helix-hairpin-helix domain DNA_pol_A_exo1 PF01612.15 gi|529078017|ref|YP_008377020.1| - 0.0085 15.5 0.1 0.015 14.7 0.1 1.5 1 1 0 1 1 1 1 3'-5' exonuclease DNA_pol_B_exo2 PF10108.4 gi|529078017|ref|YP_008377020.1| - 0.025 14.0 0.0 0.075 12.5 0.0 1.8 2 0 0 2 2 2 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB RNase_T PF00929.19 gi|529078017|ref|YP_008377020.1| - 0.088 13.0 0.2 4.5 7.5 0.1 2.3 1 1 1 2 2 2 0 Exonuclease DUF294_C PF10335.4 gi|529078018|ref|YP_008377021.1| - 0.059 13.0 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Putative nucleotidyltransferase substrate binding domain DUF2191 PF09957.4 gi|529078019|ref|YP_008377022.1| - 0.0061 16.3 2.7 0.0065 16.2 0.4 2.0 2 0 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2191) PSK_trans_fac PF07704.6 gi|529078019|ref|YP_008377022.1| - 0.0077 16.8 1.0 0.013 16.1 0.7 1.6 1 1 0 1 1 1 1 Rv0623-like transcription factor RNA_binding PF01877.12 gi|529078019|ref|YP_008377022.1| - 0.047 13.6 0.1 0.059 13.3 0.1 1.2 1 0 0 1 1 1 0 RNA binding RHH_1 PF01402.16 gi|529078019|ref|YP_008377022.1| - 0.078 12.9 0.8 0.25 11.3 0.1 2.0 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family DUF935 PF06074.7 gi|529078019|ref|YP_008377022.1| - 0.11 11.2 1.0 0.13 10.9 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF935) Nif11 PF07862.6 gi|529078019|ref|YP_008377022.1| - 0.11 12.3 0.2 0.28 11.1 0.1 1.7 1 0 0 1 1 1 0 Nitrogen fixation protein of unknown function Cas_Cas6 PF01881.11 gi|529078020|ref|YP_008377023.1| - 1.4e-09 38.3 0.0 2.3e-09 37.6 0.0 1.4 1 0 0 1 1 1 1 CRISPR associated protein Cas6 Cas_TM1802 PF09484.5 gi|529078021|ref|YP_008377024.1| - 3.7e-13 48.8 0.0 2e-08 33.2 0.0 2.1 2 0 0 2 2 2 2 CRISPR-associated protein TM1802 (cas_TM1802) DUF3647 PF12363.3 gi|529078021|ref|YP_008377024.1| - 0.19 11.8 0.7 12 5.9 0.0 2.9 3 0 0 3 3 3 0 Phage protein DUF694 PF05107.7 gi|529078022|ref|YP_008377025.1| - 5.9e-62 209.3 0.1 6.9e-62 209.1 0.1 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF694) Cas_Cas5d PF09704.5 gi|529078023|ref|YP_008377026.1| - 1.7e-08 34.3 0.0 3e-08 33.5 0.0 1.4 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) ResIII PF04851.10 gi|529078024|ref|YP_008377027.1| - 8.4e-06 25.7 0.0 1.9e-05 24.5 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|529078024|ref|YP_008377027.1| - 5.8e-05 22.6 0.1 0.00019 20.9 0.0 1.9 2 1 0 2 2 2 1 DEAD/DEAH box helicase HD PF01966.17 gi|529078024|ref|YP_008377027.1| - 0.00043 20.2 0.3 0.0011 18.9 0.1 1.9 2 0 0 2 2 2 1 HD domain Cas_Cas4 PF01930.12 gi|529078025|ref|YP_008377028.1| - 1.1e-45 155.4 0.0 1.3e-45 155.2 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|529078025|ref|YP_008377028.1| - 1.7e-06 27.6 0.1 1.8e-06 27.5 0.0 1.1 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas1 PF01867.11 gi|529078026|ref|YP_008377029.1| - 3.9e-83 278.8 0.0 4.5e-83 278.5 0.0 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas1 CRISPR_Cas2 PF09827.4 gi|529078027|ref|YP_008377030.1| - 4.7e-17 61.8 0.1 5.4e-17 61.6 0.1 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Cas_Cas2CT1978 PF09707.5 gi|529078027|ref|YP_008377030.1| - 0.00097 19.0 0.0 0.0011 18.9 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas2CT1978) OrfB_Zn_ribbon PF07282.6 gi|529078029|ref|YP_008377032.1| - 0.018 14.6 1.3 0.046 13.3 0.9 1.6 1 1 0 1 1 1 0 Putative transposase DNA-binding domain DZR PF12773.2 gi|529078029|ref|YP_008377032.1| - 0.021 14.6 0.6 0.024 14.4 0.4 1.2 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|529078029|ref|YP_008377032.1| - 0.062 12.8 2.6 0.088 12.3 1.8 1.2 1 0 0 1 1 1 0 zinc-ribbon domain RecR PF02132.10 gi|529078029|ref|YP_008377032.1| - 0.07 12.5 0.7 0.1 12.0 0.5 1.3 1 0 0 1 1 1 0 RecR protein DnaJ_CXXCXGXG PF00684.14 gi|529078029|ref|YP_008377032.1| - 0.076 13.0 1.2 0.094 12.7 0.8 1.2 1 0 0 1 1 1 0 DnaJ central domain zf-ribbon_3 PF13248.1 gi|529078029|ref|YP_008377032.1| - 0.093 11.9 2.9 0.14 11.3 2.0 1.3 1 0 0 1 1 1 0 zinc-ribbon domain UPF0547 PF10571.4 gi|529078029|ref|YP_008377032.1| - 1.4 8.7 4.6 3.6 7.3 3.2 1.7 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.5 gi|529078029|ref|YP_008377032.1| - 2 8.4 5.7 0.62 10.0 0.5 2.1 1 1 1 2 2 2 0 Zinc ribbon domain zf-C2H2_3 PF13878.1 gi|529078029|ref|YP_008377032.1| - 2.6 7.7 4.2 8.5 6.0 0.2 2.2 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO HTH_20 PF12840.2 gi|529078030|ref|YP_008377033.1| - 2.5e-09 36.7 0.4 4.2e-09 36.0 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|529078030|ref|YP_008377033.1| - 3.1e-07 29.9 0.3 4.7e-07 29.3 0.2 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|529078030|ref|YP_008377033.1| - 1.4e-05 24.6 0.1 2.1e-05 24.1 0.1 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|529078030|ref|YP_008377033.1| - 1.6e-05 24.5 0.1 2.5e-05 23.8 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|529078030|ref|YP_008377033.1| - 1.6e-05 24.1 0.0 2.6e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|529078030|ref|YP_008377033.1| - 5.2e-05 22.7 0.1 7.6e-05 22.2 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|529078030|ref|YP_008377033.1| - 7.1e-05 22.3 0.0 0.00012 21.6 0.0 1.3 1 0 0 1 1 1 1 HTH domain FUR PF01475.14 gi|529078030|ref|YP_008377033.1| - 0.00016 21.5 0.1 0.0002 21.2 0.0 1.3 1 0 0 1 1 1 1 Ferric uptake regulator family PadR PF03551.9 gi|529078030|ref|YP_008377033.1| - 0.00048 19.8 0.0 0.00072 19.2 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family TFIIE_alpha PF02002.12 gi|529078030|ref|YP_008377033.1| - 0.0034 16.8 0.1 0.004 16.6 0.1 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_AsnC-type PF13404.1 gi|529078030|ref|YP_008377033.1| - 0.0036 16.7 0.1 0.0061 16.0 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Fe_dep_repress PF01325.14 gi|529078030|ref|YP_008377033.1| - 0.0046 16.8 0.3 0.056 13.3 0.1 2.3 2 1 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.1 gi|529078030|ref|YP_008377033.1| - 0.0047 17.2 0.0 0.0073 16.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|529078030|ref|YP_008377033.1| - 0.0073 15.9 0.1 0.017 14.8 0.0 1.6 2 0 0 2 2 2 1 MarR family HTH_28 PF13518.1 gi|529078030|ref|YP_008377033.1| - 0.018 15.0 0.0 0.03 14.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|529078030|ref|YP_008377033.1| - 0.06 13.0 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain ArsR PF09824.4 gi|529078030|ref|YP_008377033.1| - 0.066 12.5 0.0 0.078 12.2 0.0 1.1 1 0 0 1 1 1 0 ArsR transcriptional regulator QueT PF06177.6 gi|529078031|ref|YP_008377034.1| - 0.026 14.4 2.9 0.036 14.0 2.0 1.3 1 0 0 1 1 1 0 QueT transporter DUF3353 PF11833.3 gi|529078031|ref|YP_008377034.1| - 0.032 13.6 3.1 0.039 13.4 2.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3353) DUF751 PF05421.6 gi|529078031|ref|YP_008377034.1| - 0.046 14.0 0.4 0.046 14.0 0.3 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF751) DUF2206 PF09971.4 gi|529078031|ref|YP_008377034.1| - 0.1 11.4 4.6 0.097 11.4 3.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2206) TrbI_Ftype PF09677.5 gi|529078031|ref|YP_008377034.1| - 0.1 12.4 0.4 0.21 11.4 0.1 1.6 1 1 1 2 2 2 0 Type-F conjugative transfer system protein (TrbI_Ftype) DUF202 PF02656.10 gi|529078031|ref|YP_008377034.1| - 0.29 11.3 4.0 9.4 6.5 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF202) DUF2976 PF11190.3 gi|529078031|ref|YP_008377034.1| - 0.45 10.0 3.3 0.2 11.2 0.6 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2976) UvrD-helicase PF00580.16 gi|529078032|ref|YP_008377035.1| - 8.7e-26 90.9 0.0 1.1e-24 87.2 0.0 2.2 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain AAA_19 PF13245.1 gi|529078032|ref|YP_008377035.1| - 8.6e-12 44.6 0.1 2.9e-11 42.9 0.0 1.9 2 0 0 2 2 2 1 Part of AAA domain UvrD_C PF13361.1 gi|529078032|ref|YP_008377035.1| - 1.4e-11 44.5 0.0 5.9e-08 32.5 0.0 2.3 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.1 gi|529078032|ref|YP_008377035.1| - 5e-07 29.8 0.7 2.1e-05 24.5 0.2 2.9 2 1 0 2 2 2 1 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.13 gi|529078032|ref|YP_008377035.1| - 6.6e-05 22.5 0.0 1.8 8.0 0.0 3.7 4 0 0 4 4 4 2 Viral (Superfamily 1) RNA helicase AAA_30 PF13604.1 gi|529078032|ref|YP_008377035.1| - 0.00036 20.1 0.3 0.039 13.5 0.0 2.8 3 0 0 3 3 3 1 AAA domain Herpes_ori_bp PF02399.10 gi|529078032|ref|YP_008377035.1| - 0.0018 16.3 0.0 0.0026 15.7 0.0 1.1 1 0 0 1 1 1 1 Origin of replication binding protein AAA_11 PF13086.1 gi|529078032|ref|YP_008377035.1| - 0.0024 17.4 0.0 0.0042 16.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|529078032|ref|YP_008377035.1| - 0.0056 16.8 0.0 0.76 9.9 0.0 2.8 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|529078032|ref|YP_008377035.1| - 0.037 13.4 0.0 0.8 9.0 0.0 2.8 3 0 0 3 3 3 0 AAA domain DUF3638 PF12340.3 gi|529078032|ref|YP_008377035.1| - 0.046 12.7 0.1 0.25 10.2 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3638) DNA_ligase_A_M PF01068.16 gi|529078033|ref|YP_008377036.1| - 7.2e-14 51.6 0.0 1.2e-13 50.9 0.0 1.2 1 0 0 1 1 1 1 ATP dependent DNA ligase domain RNA_ligase PF09414.5 gi|529078033|ref|YP_008377036.1| - 7.1e-09 35.7 0.0 1.1e-08 35.0 0.0 1.3 1 0 0 1 1 1 1 RNA ligase ATP-synt_D PF01813.12 gi|529078034|ref|YP_008377037.1| - 7.7e-61 205.0 11.3 9.8e-61 204.7 7.8 1.1 1 0 0 1 1 1 1 ATP synthase subunit D DMAP1 PF05499.7 gi|529078034|ref|YP_008377037.1| - 0.022 14.3 0.1 0.022 14.3 0.0 2.3 2 0 0 2 2 2 0 DNA methyltransferase 1-associated protein 1 (DMAP1) Ead_Ea22 PF13935.1 gi|529078034|ref|YP_008377037.1| - 0.023 15.0 13.1 0.019 15.3 5.2 2.2 1 1 1 2 2 2 0 Ead/Ea22-like protein Laminin_I PF06008.9 gi|529078034|ref|YP_008377037.1| - 0.043 13.1 0.2 0.043 13.1 0.1 2.5 2 1 0 2 2 2 0 Laminin Domain I CorA PF01544.13 gi|529078034|ref|YP_008377037.1| - 6.4 5.7 10.7 1.8 7.5 2.2 2.1 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein BCD PF15461.1 gi|529078035|ref|YP_008377038.1| - 1.5e-70 237.6 15.9 1.8e-70 237.3 11.0 1.1 1 0 0 1 1 1 1 Beta-carotene 15,15'-dioxygenase PMT_2 PF13231.1 gi|529078036|ref|YP_008377039.1| - 0.0034 17.3 1.1 0.0036 17.2 0.8 1.0 1 0 0 1 1 1 1 Dolichyl-phosphate-mannose-protein mannosyltransferase ABC_tran PF00005.22 gi|529078037|ref|YP_008377040.1| - 2.5e-28 99.0 0.0 3.9e-28 98.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|529078037|ref|YP_008377040.1| - 7.8e-12 45.7 0.0 2.6e-06 27.6 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|529078037|ref|YP_008377040.1| - 2.3e-05 23.8 1.1 6.2e-05 22.4 0.4 1.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain DUF4162 PF13732.1 gi|529078037|ref|YP_008377040.1| - 0.00027 21.3 0.0 0.00059 20.2 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.1 gi|529078037|ref|YP_008377040.1| - 0.00028 21.2 0.0 0.00043 20.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|529078037|ref|YP_008377040.1| - 0.0027 16.9 0.3 0.13 11.4 0.2 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|529078037|ref|YP_008377040.1| - 0.0051 16.2 0.2 0.023 14.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|529078037|ref|YP_008377040.1| - 0.0052 16.4 0.8 0.044 13.5 0.2 2.7 3 0 0 3 3 3 1 Part of AAA domain AAA_16 PF13191.1 gi|529078037|ref|YP_008377040.1| - 0.011 15.7 0.5 0.025 14.5 0.3 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.1 gi|529078037|ref|YP_008377040.1| - 0.013 15.1 0.7 0.38 10.2 0.1 2.3 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|529078037|ref|YP_008377040.1| - 0.013 15.4 0.1 0.039 13.9 0.1 1.8 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|529078037|ref|YP_008377040.1| - 0.019 14.0 0.0 0.23 10.4 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain UPF0079 PF02367.12 gi|529078037|ref|YP_008377040.1| - 0.019 14.5 0.2 0.042 13.4 0.1 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA PF00004.24 gi|529078037|ref|YP_008377040.1| - 0.028 14.5 0.5 0.069 13.3 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.10 gi|529078037|ref|YP_008377040.1| - 0.061 13.0 0.7 0.11 12.2 0.1 1.7 2 0 0 2 2 2 0 NTPase AAA_22 PF13401.1 gi|529078037|ref|YP_008377040.1| - 0.088 12.9 2.7 2.6 8.1 1.0 2.9 1 1 1 2 2 2 0 AAA domain HAD PF12710.2 gi|529078037|ref|YP_008377040.1| - 0.097 12.8 0.0 0.12 12.5 0.0 1.2 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase NB-ARC PF00931.17 gi|529078037|ref|YP_008377040.1| - 0.18 10.6 1.8 0.51 9.1 0.1 2.0 2 0 0 2 2 2 0 NB-ARC domain 5_3_exonuc_N PF02739.11 gi|529078037|ref|YP_008377040.1| - 0.3 10.4 1.9 1.2 8.4 0.5 2.3 2 1 0 2 2 2 0 5'-3' exonuclease, N-terminal resolvase-like domain AAA_17 PF13207.1 gi|529078037|ref|YP_008377040.1| - 0.3 11.8 1.7 1.9 9.2 1.2 2.4 1 1 0 1 1 1 0 AAA domain YuiB PF14068.1 gi|529078038|ref|YP_008377041.1| - 0.031 14.5 5.5 0.077 13.3 3.8 1.6 1 0 0 1 1 1 0 Putative membrane protein ATP-synt_ab PF00006.20 gi|529078039|ref|YP_008377042.1| - 3.3e-57 193.4 0.0 4.5e-57 193.0 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|529078039|ref|YP_008377042.1| - 1.6e-17 64.0 0.2 3.1e-17 63.0 0.2 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|529078039|ref|YP_008377042.1| - 9.4e-14 51.3 0.6 9.4e-14 51.3 0.4 1.7 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.5 gi|529078039|ref|YP_008377042.1| - 6.8e-05 22.6 0.7 0.00028 20.7 0.3 2.3 2 0 0 2 2 2 1 HAS barrel domain ATP-synt_ab PF00006.20 gi|529078040|ref|YP_008377043.1| - 1.1e-94 315.8 0.0 1.7e-94 315.3 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|529078040|ref|YP_008377043.1| - 6.4e-16 58.8 0.3 1.2e-15 58.0 0.2 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|529078040|ref|YP_008377043.1| - 2.3e-11 43.7 4.1 2.3e-11 43.7 2.9 2.5 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain Peptidase_M23 PF01551.17 gi|529078040|ref|YP_008377043.1| - 0.04 13.9 0.2 1.3 9.0 0.0 2.7 3 0 0 3 3 3 0 Peptidase family M23 AAA_22 PF13401.1 gi|529078040|ref|YP_008377043.1| - 0.08 13.0 0.0 0.24 11.5 0.0 1.8 1 0 0 1 1 1 0 AAA domain ATP-synt_F PF01990.12 gi|529078041|ref|YP_008377044.1| - 7.5e-18 64.7 0.1 8.8e-18 64.4 0.0 1.1 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit vATP-synt_AC39 PF01992.11 gi|529078042|ref|YP_008377045.1| - 3.6e-90 302.5 4.2 4e-90 302.3 2.9 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit DUF3209 PF11483.3 gi|529078042|ref|YP_008377045.1| - 0.011 16.0 3.6 0.18 12.1 0.2 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3209) DnaG_DnaB_bind PF08278.6 gi|529078042|ref|YP_008377045.1| - 0.048 13.8 0.4 0.36 11.0 0.1 2.5 2 0 0 2 2 2 0 DNA primase DnaG DnaB-binding DUF2981 PF11200.3 gi|529078042|ref|YP_008377045.1| - 0.17 10.9 0.6 0.56 9.2 0.2 1.9 2 1 1 3 3 3 0 Protein of unknown function (DUF2981) vATP-synt_E PF01991.13 gi|529078043|ref|YP_008377046.1| - 3.6e-37 127.5 15.5 4.4e-37 127.2 10.7 1.1 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit DivIVA PF05103.8 gi|529078043|ref|YP_008377046.1| - 0.0028 17.7 11.3 0.0028 17.7 7.9 2.9 1 1 1 3 3 3 1 DivIVA protein DUF3552 PF12072.3 gi|529078043|ref|YP_008377046.1| - 0.0067 15.6 21.1 0.011 15.0 14.6 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3552) HrpE PF06188.7 gi|529078043|ref|YP_008377046.1| - 0.025 14.3 11.3 0.037 13.7 7.8 1.2 1 0 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E Mt_ATP-synt_B PF05405.9 gi|529078043|ref|YP_008377046.1| - 0.08 12.3 5.2 0.12 11.7 3.6 1.4 1 0 0 1 1 1 0 Mitochondrial ATP synthase B chain precursor (ATP-synt_B) ATP-synt_B PF00430.13 gi|529078043|ref|YP_008377046.1| - 0.36 10.6 24.0 0.52 10.1 15.9 1.8 1 1 0 1 1 1 0 ATP synthase B/B' CF(0) OmpH PF03938.9 gi|529078043|ref|YP_008377046.1| - 0.43 10.4 11.2 0.62 9.9 7.8 1.3 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) AAA_13 PF13166.1 gi|529078043|ref|YP_008377046.1| - 0.6 8.5 8.0 0.74 8.2 5.5 1.1 1 0 0 1 1 1 0 AAA domain V_ATPase_I PF01496.14 gi|529078043|ref|YP_008377046.1| - 0.61 7.8 4.6 0.63 7.8 3.2 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Asp-B-Hydro_N PF05279.6 gi|529078043|ref|YP_008377046.1| - 1.9 8.2 16.5 2.7 7.7 11.4 1.2 1 0 0 1 1 1 0 Aspartyl beta-hydroxylase N-terminal region NAM-associated PF14303.1 gi|529078043|ref|YP_008377046.1| - 5.8 7.2 11.5 9.1 6.5 8.0 1.2 1 0 0 1 1 1 0 No apical meristem-associated C-terminal domain GrpE PF01025.14 gi|529078043|ref|YP_008377046.1| - 7.9 6.0 18.5 51 3.3 12.8 2.0 1 1 0 1 1 1 0 GrpE ATP-synt_C PF00137.16 gi|529078044|ref|YP_008377047.1| - 4e-13 49.0 9.3 5.1e-13 48.7 6.5 1.1 1 0 0 1 1 1 1 ATP synthase subunit C V_ATPase_I PF01496.14 gi|529078045|ref|YP_008377048.1| - 1.1e-74 251.6 23.2 8.1e-34 116.5 5.6 5.1 4 1 1 5 5 5 5 V-type ATPase 116kDa subunit family DegS PF05384.6 gi|529078045|ref|YP_008377048.1| - 0.0047 16.1 4.5 0.045 12.9 0.1 2.2 2 0 0 2 2 2 1 Sensor protein DegS Prefoldin_2 PF01920.15 gi|529078045|ref|YP_008377048.1| - 0.0077 15.9 1.5 3.1 7.6 0.4 2.3 2 0 0 2 2 2 2 Prefoldin subunit DUF4140 PF13600.1 gi|529078045|ref|YP_008377048.1| - 0.0095 16.3 2.2 3.9 7.9 0.4 2.4 2 0 0 2 2 2 2 N-terminal domain of unknown function (DUF4140) ATG16 PF08614.6 gi|529078045|ref|YP_008377048.1| - 0.01 15.6 1.6 0.16 11.7 0.1 2.1 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) BBS2_C PF14782.1 gi|529078045|ref|YP_008377048.1| - 0.041 12.4 0.9 1 7.8 0.0 2.1 2 0 0 2 2 2 0 Ciliary BBSome complex subunit 2, C-terminal CENP-Q PF13094.1 gi|529078045|ref|YP_008377048.1| - 0.12 12.4 0.1 0.12 12.4 0.1 1.8 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit Syntaxin-6_N PF09177.6 gi|529078045|ref|YP_008377048.1| - 0.3 11.5 1.1 11 6.5 0.1 2.4 2 0 0 2 2 2 0 Syntaxin 6, N-terminal FlaC_arch PF05377.6 gi|529078045|ref|YP_008377048.1| - 0.31 10.9 3.3 6.1 6.8 0.1 2.5 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) TMF_DNA_bd PF12329.3 gi|529078045|ref|YP_008377048.1| - 0.34 10.7 2.7 7.9 6.3 0.1 2.2 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding DUF3086 PF11285.3 gi|529078045|ref|YP_008377048.1| - 1.2 7.8 3.4 9.2 4.9 0.2 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF3086) APG6 PF04111.7 gi|529078045|ref|YP_008377048.1| - 3.4 6.6 3.9 13 4.7 0.4 2.1 2 0 0 2 2 2 0 Autophagy protein Apg6 V-ATPase_G PF03179.10 gi|529078046|ref|YP_008377049.1| - 2.6e-06 27.6 20.3 3.3e-06 27.3 14.1 1.1 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit ATP-synt_B PF00430.13 gi|529078046|ref|YP_008377049.1| - 5.9e-05 22.8 27.2 0.00015 21.5 18.9 1.7 1 1 0 1 1 1 1 ATP synthase B/B' CF(0) HrpE PF06188.7 gi|529078046|ref|YP_008377049.1| - 0.00085 19.1 11.0 0.00085 19.1 7.6 2.0 1 1 1 2 2 2 1 HrpE/YscL/FliH and V-type ATPase subunit E DUF883 PF05957.8 gi|529078046|ref|YP_008377049.1| - 0.027 14.8 22.1 0.2 12.0 5.9 2.0 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) DUF3552 PF12072.3 gi|529078046|ref|YP_008377049.1| - 0.12 11.5 28.5 0.25 10.5 15.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) Env-gp36 PF09590.5 gi|529078046|ref|YP_008377049.1| - 0.15 10.2 0.5 0.15 10.2 0.3 1.0 1 0 0 1 1 1 0 Lentivirus surface glycoprotein NAP PF00956.13 gi|529078046|ref|YP_008377049.1| - 0.63 9.1 8.0 0.74 8.8 5.5 1.2 1 0 0 1 1 1 0 Nucleosome assembly protein (NAP) DivIVA PF05103.8 gi|529078046|ref|YP_008377049.1| - 0.71 9.9 18.9 0.085 12.9 7.1 2.1 1 1 1 2 2 2 0 DivIVA protein vATP-synt_E PF01991.13 gi|529078046|ref|YP_008377049.1| - 1.4 8.1 26.8 4.7 6.4 18.5 1.9 1 1 0 1 1 1 0 ATP synthase (E/31 kDa) subunit YtxH PF12732.2 gi|529078046|ref|YP_008377049.1| - 1.7 9.0 13.4 5.1e+02 1.1 9.3 2.7 1 1 0 1 1 1 0 YtxH-like protein LUC7 PF03194.10 gi|529078046|ref|YP_008377049.1| - 3.2 7.2 12.1 3.4 7.1 8.4 1.1 1 0 0 1 1 1 0 LUC7 N_terminus Sds3 PF08598.6 gi|529078046|ref|YP_008377049.1| - 4.4 6.7 12.0 5.3 6.5 8.3 1.2 1 0 0 1 1 1 0 Sds3-like Caudo_TAP PF02413.12 gi|529078046|ref|YP_008377049.1| - 4.7 7.3 16.6 13 5.9 7.1 2.3 1 1 1 2 2 2 0 Caudovirales tail fibre assembly protein HSP70 PF00012.15 gi|529078046|ref|YP_008377049.1| - 7.4 4.3 12.3 8.5 4.1 8.5 1.0 1 0 0 1 1 1 0 Hsp70 protein PRKCSH-like PF12999.2 gi|529078046|ref|YP_008377049.1| - 9.1 5.8 9.2 4.2 6.9 0.4 2.0 1 1 1 2 2 2 0 Glucosidase II beta subunit-like Methyltransf_11 PF08241.7 gi|529078047|ref|YP_008377050.1| - 3.1e-26 91.6 0.0 5.8e-26 90.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|529078047|ref|YP_008377050.1| - 1.1e-19 70.5 0.0 1.4e-19 70.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|529078047|ref|YP_008377050.1| - 5e-18 65.3 0.0 6.2e-18 65.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|529078047|ref|YP_008377050.1| - 4.1e-16 59.1 0.0 6.7e-16 58.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|529078047|ref|YP_008377050.1| - 1.3e-15 57.6 0.0 2.1e-15 57.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|529078047|ref|YP_008377050.1| - 2.4e-15 56.2 0.0 3.5e-12 45.9 0.0 2.0 1 1 1 2 2 2 2 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|529078047|ref|YP_008377050.1| - 2.1e-13 50.8 0.0 3.3e-13 50.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|529078047|ref|YP_008377050.1| - 2e-10 40.7 0.0 7.5e-10 38.8 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.6 gi|529078047|ref|YP_008377050.1| - 6.9e-06 24.9 0.0 9.4e-06 24.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) RrnaAD PF00398.15 gi|529078047|ref|YP_008377050.1| - 2e-05 23.7 0.0 2.1e-05 23.6 0.0 1.2 1 1 0 1 1 1 1 Ribosomal RNA adenine dimethylase PCMT PF01135.14 gi|529078047|ref|YP_008377050.1| - 3.6e-05 23.3 0.0 4.6e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.7 gi|529078047|ref|YP_008377050.1| - 4.7e-05 22.8 0.0 6.4e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_29 PF03141.11 gi|529078047|ref|YP_008377050.1| - 0.00031 19.2 0.0 0.00043 18.7 0.0 1.2 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase MTS PF05175.9 gi|529078047|ref|YP_008377050.1| - 0.0052 16.1 0.0 0.011 15.1 0.0 1.4 2 0 0 2 2 2 1 Methyltransferase small domain CMAS PF02353.15 gi|529078047|ref|YP_008377050.1| - 0.027 13.5 0.0 0.033 13.2 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_8 PF05148.10 gi|529078047|ref|YP_008377050.1| - 0.037 13.6 0.0 0.062 12.9 0.0 1.5 1 1 0 1 1 1 0 Hypothetical methyltransferase DUF1628 PF07790.6 gi|529078048|ref|YP_008377051.1| - 6.6e-14 52.4 5.9 7.3e-14 52.2 2.8 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) HTH_IclR PF09339.5 gi|529078050|ref|YP_008377053.1| - 0.012 15.2 0.5 0.11 12.0 0.0 2.7 3 0 0 3 3 3 0 IclR helix-turn-helix domain SpoIIIAH PF12685.2 gi|529078050|ref|YP_008377053.1| - 0.013 15.0 1.3 0.065 12.7 0.2 2.1 2 0 0 2 2 2 0 SpoIIIAH-like protein HTH_24 PF13412.1 gi|529078050|ref|YP_008377053.1| - 0.13 11.7 0.2 0.48 9.8 0.1 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding DUF3357 PF11837.3 gi|529078050|ref|YP_008377053.1| - 0.14 12.0 0.8 1.1 9.0 0.0 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF3357) TMEM154 PF15102.1 gi|529078050|ref|YP_008377053.1| - 1.8 8.2 4.2 0.96 9.1 0.9 2.1 1 1 1 2 2 2 0 TMEM154 protein family polyprenyl_synt PF00348.12 gi|529078051|ref|YP_008377054.1| - 2.1e-53 180.8 0.1 2.4e-53 180.6 0.1 1.0 1 0 0 1 1 1 1 Polyprenyl synthetase Pyr_redox_2 PF07992.9 gi|529078052|ref|YP_008377055.1| - 5.8e-34 117.7 3.0 3.9e-16 59.5 0.0 3.9 2 1 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|529078052|ref|YP_008377055.1| - 9.3e-26 90.0 0.8 4.5e-20 71.8 0.1 3.5 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|529078052|ref|YP_008377055.1| - 9.1e-17 60.9 5.2 1.2e-06 27.6 0.2 4.3 3 1 1 4 4 4 4 FAD dependent oxidoreductase Pyr_redox_dim PF02852.17 gi|529078052|ref|YP_008377055.1| - 1.9e-12 47.2 0.0 4.1e-12 46.0 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.1 gi|529078052|ref|YP_008377055.1| - 2.1e-11 44.2 0.1 0.00017 21.7 0.0 3.2 1 1 2 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|529078052|ref|YP_008377055.1| - 5.8e-08 31.6 0.1 0.22 9.9 0.0 4.0 3 1 1 4 4 4 3 HI0933-like protein NAD_binding_8 PF13450.1 gi|529078052|ref|YP_008377055.1| - 6e-08 32.5 0.1 0.016 15.2 0.0 2.7 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.19 gi|529078052|ref|YP_008377055.1| - 0.00053 19.1 2.9 0.24 10.4 0.0 2.7 4 0 0 4 4 4 2 Flavin containing amine oxidoreductase FAD_oxidored PF12831.2 gi|529078052|ref|YP_008377055.1| - 0.00071 18.7 0.3 0.073 12.1 0.0 2.6 3 0 0 3 3 3 1 FAD dependent oxidoreductase 3HCDH_N PF02737.13 gi|529078052|ref|YP_008377055.1| - 0.0033 17.1 0.0 0.0056 16.3 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|529078052|ref|YP_008377055.1| - 0.0034 16.7 0.0 0.0062 15.9 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_9 PF13454.1 gi|529078052|ref|YP_008377055.1| - 0.0069 16.1 4.9 1.1 8.9 0.0 3.5 3 1 1 4 4 4 1 FAD-NAD(P)-binding TrkA_N PF02254.13 gi|529078052|ref|YP_008377055.1| - 0.012 15.6 0.5 4.6 7.2 0.3 3.4 3 1 0 3 3 3 0 TrkA-N domain Lycopene_cycl PF05834.7 gi|529078052|ref|YP_008377055.1| - 0.016 14.1 0.9 1.9 7.3 0.0 3.2 2 1 2 4 4 4 0 Lycopene cyclase protein Tricorn_PDZ PF14685.1 gi|529078052|ref|YP_008377055.1| - 0.083 12.6 0.1 0.27 11.0 0.1 2.0 1 0 0 1 1 1 0 Tricorn protease PDZ domain GIDA PF01134.17 gi|529078052|ref|YP_008377055.1| - 0.12 11.2 0.3 30 3.3 0.0 3.3 3 1 1 4 4 4 0 Glucose inhibited division protein A DUF1684 PF07920.6 gi|529078054|ref|YP_008377057.1| - 5.9e-52 175.3 0.1 7.1e-52 175.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1684) ABC2_membrane_3 PF12698.2 gi|529078055|ref|YP_008377058.1| - 4.7e-35 121.2 12.8 5.3e-35 121.0 8.9 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|529078055|ref|YP_008377058.1| - 1.6e-18 66.5 11.6 2.1e-18 66.2 8.0 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|529078055|ref|YP_008377058.1| - 8.9e-15 54.4 3.0 1.6e-14 53.6 2.1 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|529078055|ref|YP_008377058.1| - 7.9e-07 28.5 18.8 5.2e-06 25.8 13.1 2.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|529078056|ref|YP_008377059.1| - 6.3e-28 97.7 0.0 8.4e-28 97.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|529078056|ref|YP_008377059.1| - 1.7e-12 47.9 0.1 9e-11 42.2 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|529078056|ref|YP_008377059.1| - 7.7e-05 22.1 0.2 0.00013 21.4 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|529078056|ref|YP_008377059.1| - 0.00091 19.6 0.0 0.0011 19.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|529078056|ref|YP_008377059.1| - 0.0016 17.8 0.0 0.0036 16.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|529078056|ref|YP_008377059.1| - 0.0019 19.0 0.2 0.0049 17.6 0.1 1.9 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|529078056|ref|YP_008377059.1| - 0.0035 16.6 0.1 0.86 8.7 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain SRP54 PF00448.17 gi|529078056|ref|YP_008377059.1| - 0.018 14.4 0.1 0.031 13.7 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_16 PF13191.1 gi|529078056|ref|YP_008377059.1| - 0.024 14.6 0.2 0.13 12.2 0.1 2.0 2 1 0 3 3 3 0 AAA ATPase domain AAA_22 PF13401.1 gi|529078056|ref|YP_008377059.1| - 0.028 14.5 0.1 0.052 13.6 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|529078056|ref|YP_008377059.1| - 0.037 13.6 0.1 0.087 12.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|529078056|ref|YP_008377059.1| - 0.038 13.8 0.1 0.05 13.4 0.1 1.5 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|529078056|ref|YP_008377059.1| - 0.053 13.4 0.0 0.13 12.2 0.0 1.6 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_14 PF13173.1 gi|529078056|ref|YP_008377059.1| - 0.06 13.2 0.1 0.41 10.5 0.0 2.1 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|529078056|ref|YP_008377059.1| - 0.061 12.7 0.0 0.11 11.8 0.0 1.5 2 0 0 2 2 2 0 AAA-like domain AAA_18 PF13238.1 gi|529078056|ref|YP_008377059.1| - 0.063 13.5 0.2 0.3 11.3 0.2 2.1 1 1 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|529078056|ref|YP_008377059.1| - 0.093 11.4 0.1 0.17 10.6 0.1 1.3 1 0 0 1 1 1 0 ArgK protein DUF258 PF03193.11 gi|529078056|ref|YP_008377059.1| - 0.11 11.7 0.0 0.18 10.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_5 PF07728.9 gi|529078056|ref|YP_008377059.1| - 0.13 11.9 0.0 0.35 10.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Aldo_ket_red PF00248.16 gi|529078058|ref|YP_008377061.1| - 3e-77 259.2 0.0 3.3e-77 259.0 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Lipase_GDSL_2 PF13472.1 gi|529078058|ref|YP_008377061.1| - 0.015 15.4 0.1 0.78 9.8 0.0 2.5 2 1 1 3 3 3 0 GDSL-like Lipase/Acylhydrolase family RHH_1 PF01402.16 gi|529078058|ref|YP_008377061.1| - 0.44 10.5 2.9 0.57 10.1 0.0 2.7 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family HSP20 PF00011.16 gi|529078059|ref|YP_008377062.1| - 1e-16 60.6 0.0 1.5e-16 60.0 0.0 1.3 1 0 0 1 1 1 1 Hsp20/alpha crystallin family Helicase_C_2 PF13307.1 gi|529078060|ref|YP_008377063.1| - 2e-29 102.7 0.0 5.5e-29 101.2 0.0 1.7 2 0 0 2 2 2 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|529078060|ref|YP_008377063.1| - 3e-20 72.3 0.1 1.1e-19 70.5 0.1 1.8 1 1 0 1 1 1 1 DEAD_2 DEAD PF00270.24 gi|529078060|ref|YP_008377063.1| - 1.3e-10 41.0 0.1 6.1e-08 32.3 0.0 3.2 3 0 0 3 3 3 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|529078060|ref|YP_008377063.1| - 3.7e-07 30.1 1.0 4.2e-06 26.7 0.7 2.2 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit KaiC PF06745.8 gi|529078060|ref|YP_008377063.1| - 0.00014 21.0 0.5 0.00038 19.6 0.0 1.8 1 1 1 2 2 2 1 KaiC AAA_19 PF13245.1 gi|529078060|ref|YP_008377063.1| - 0.004 16.8 0.2 0.01 15.5 0.2 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_16 PF13191.1 gi|529078060|ref|YP_008377063.1| - 0.0074 16.2 3.8 0.021 14.8 2.1 2.2 1 1 0 1 1 1 1 AAA ATPase domain DUF2075 PF09848.4 gi|529078060|ref|YP_008377063.1| - 0.0089 15.0 1.4 0.075 11.9 0.0 2.3 1 1 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) PhoH PF02562.11 gi|529078060|ref|YP_008377063.1| - 0.0092 15.2 0.1 0.028 13.6 0.0 1.7 2 0 0 2 2 2 1 PhoH-like protein Zot PF05707.7 gi|529078060|ref|YP_008377063.1| - 0.0093 15.4 0.0 1 8.8 0.0 2.4 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) AAA_34 PF13872.1 gi|529078060|ref|YP_008377063.1| - 0.011 14.4 0.0 0.021 13.5 0.0 1.3 1 0 0 1 1 1 0 P-loop containing NTP hydrolase pore-1 Sigma54_activat PF00158.21 gi|529078060|ref|YP_008377063.1| - 0.029 13.8 0.0 0.055 12.9 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain CPT PF07931.7 gi|529078060|ref|YP_008377063.1| - 0.058 13.0 0.1 0.19 11.3 0.0 1.8 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein AAA_25 PF13481.1 gi|529078060|ref|YP_008377063.1| - 0.078 12.3 0.6 0.33 10.3 0.4 2.2 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|529078060|ref|YP_008377063.1| - 0.079 13.0 1.0 2.4 8.2 0.7 2.7 1 1 0 1 1 1 0 AAA domain SecA_DEAD PF07517.9 gi|529078060|ref|YP_008377063.1| - 0.1 11.8 0.1 0.26 10.5 0.1 1.6 1 0 0 1 1 1 0 SecA DEAD-like domain AAA PF00004.24 gi|529078060|ref|YP_008377063.1| - 0.44 10.7 1.7 5.2 7.2 0.8 2.6 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|529078061|ref|YP_008377064.1| - 6.7e-28 97.9 0.0 5e-27 95.1 0.0 2.1 1 1 0 1 1 1 1 Archaeal ATPase DUF234 PF03008.9 gi|529078061|ref|YP_008377064.1| - 2.3e-22 79.0 0.3 6.3e-22 77.5 0.2 1.8 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function AAA_14 PF13173.1 gi|529078061|ref|YP_008377064.1| - 2.8e-08 33.7 0.0 5.6e-08 32.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain Mrr_cat PF04471.7 gi|529078061|ref|YP_008377064.1| - 1.5e-06 27.9 0.1 7.5e-06 25.7 0.0 2.0 2 0 0 2 2 2 1 Restriction endonuclease AAA_16 PF13191.1 gi|529078061|ref|YP_008377064.1| - 1.5e-05 25.0 0.0 0.00013 21.9 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|529078061|ref|YP_008377064.1| - 1.7e-05 24.9 0.0 3.8e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|529078061|ref|YP_008377064.1| - 0.00016 21.8 0.0 0.00032 20.9 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF2250 PF10007.4 gi|529078061|ref|YP_008377064.1| - 0.0022 17.8 0.0 0.0042 16.9 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_45 PF14947.1 gi|529078061|ref|YP_008377064.1| - 0.029 14.2 0.0 0.078 12.7 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix HTH_20 PF12840.2 gi|529078061|ref|YP_008377064.1| - 0.053 13.3 0.1 0.15 11.8 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_IclR PF09339.5 gi|529078061|ref|YP_008377064.1| - 0.14 11.8 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain AAA_17 PF13207.1 gi|529078061|ref|YP_008377064.1| - 0.32 11.8 3.4 0.74 10.6 0.0 2.7 2 1 0 2 2 2 0 AAA domain DUF4286 PF14114.1 gi|529078062|ref|YP_008377065.1| - 0.029 14.6 0.6 0.066 13.4 0.2 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4286) Glyco_hydro_65m PF03632.10 gi|529078062|ref|YP_008377065.1| - 0.071 11.7 0.8 0.086 11.5 0.5 1.0 1 0 0 1 1 1 0 Glycosyl hydrolase family 65 central catalytic domain PIN PF01850.16 gi|529078063|ref|YP_008377066.1| - 2.2e-16 60.3 0.2 2.5e-16 60.1 0.1 1.0 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|529078063|ref|YP_008377066.1| - 0.007 17.0 0.1 0.0084 16.7 0.0 1.3 1 1 0 1 1 1 1 PIN domain DUF1250 PF06855.7 gi|529078063|ref|YP_008377066.1| - 0.059 12.8 0.0 0.12 11.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1250) tRNA-synt_1c PF00749.16 gi|529078064|ref|YP_008377067.1| - 5.4e-54 182.9 0.0 6.6e-54 182.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|529078064|ref|YP_008377067.1| - 4.4e-19 68.8 0.0 9.6e-19 67.7 0.0 1.6 1 1 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain tRNA-synt_1d PF00750.14 gi|529078064|ref|YP_008377067.1| - 0.1 11.4 0.0 0.16 10.7 0.0 1.2 1 0 0 1 1 1 0 tRNA synthetases class I (R) Meth_synt_1 PF08267.7 gi|529078064|ref|YP_008377067.1| - 0.14 11.4 0.0 0.22 10.7 0.0 1.2 1 0 0 1 1 1 0 Cobalamin-independent synthase, N-terminal domain polyprenyl_synt PF00348.12 gi|529078065|ref|YP_008377068.1| - 1.6e-58 197.6 0.3 2.2e-58 197.1 0.2 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase Lactamase_B PF00753.22 gi|529078066|ref|YP_008377069.1| - 4.2e-12 46.1 1.8 7.8e-12 45.2 1.2 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|529078066|ref|YP_008377069.1| - 6.7e-07 29.0 0.5 6.9e-06 25.7 0.2 2.1 2 0 0 2 2 2 1 Beta-lactamase superfamily domain RMMBL PF07521.7 gi|529078066|ref|YP_008377069.1| - 0.0018 18.0 1.2 0.0037 17.0 0.2 2.0 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase DegT_DnrJ_EryC1 PF01041.12 gi|529078066|ref|YP_008377069.1| - 0.011 14.7 0.2 2.1 7.2 0.0 2.2 2 0 0 2 2 2 0 DegT/DnrJ/EryC1/StrS aminotransferase family DUF2910 PF11139.3 gi|529078067|ref|YP_008377070.1| - 3.3e-05 23.1 0.2 5.5e-05 22.4 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2910) AA_kinase PF00696.23 gi|529078068|ref|YP_008377071.1| - 5.2e-32 111.3 4.6 6.4e-32 111.0 3.2 1.1 1 0 0 1 1 1 1 Amino acid kinase family RuBisCO_large PF00016.15 gi|529078068|ref|YP_008377071.1| - 0.3 9.8 4.6 0.65 8.7 1.2 2.1 2 0 0 2 2 2 0 Ribulose bisphosphate carboxylase large chain, catalytic domain GHMP_kinases_C PF08544.8 gi|529078069|ref|YP_008377072.1| - 5e-15 55.4 1.9 5.3e-13 48.9 0.2 2.5 2 0 0 2 2 2 2 GHMP kinases C terminal GHMP_kinases_N PF00288.21 gi|529078069|ref|YP_008377072.1| - 1.1e-13 51.0 1.2 2.3e-13 50.0 0.6 1.8 2 0 0 2 2 2 1 GHMP kinases N terminal domain GalKase_gal_bdg PF10509.4 gi|529078069|ref|YP_008377072.1| - 0.00079 18.6 0.0 0.0017 17.6 0.0 1.6 1 0 0 1 1 1 1 Galactokinase galactose-binding signature Yip1 PF04893.12 gi|529078070|ref|YP_008377073.1| - 6.5 6.2 19.1 8 5.9 13.3 1.1 1 0 0 1 1 1 0 Yip1 domain DUF2530 PF10745.4 gi|529078071|ref|YP_008377074.1| - 0.23 11.4 3.0 0.27 11.2 2.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2530) DUF3093 PF11292.3 gi|529078071|ref|YP_008377074.1| - 0.7 9.6 4.2 0.76 9.5 2.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3093) DUF2142 PF09913.4 gi|529078071|ref|YP_008377074.1| - 0.98 8.0 4.5 1.1 7.8 3.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2142) SecE PF00584.15 gi|529078071|ref|YP_008377074.1| - 4.8 6.8 8.4 1 8.9 1.6 2.0 2 0 0 2 2 2 0 SecE/Sec61-gamma subunits of protein translocation complex DUF393 PF04134.7 gi|529078072|ref|YP_008377075.1| - 2.1e-12 48.1 0.0 2.4e-12 47.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function, DUF393 Aldo_ket_red PF00248.16 gi|529078073|ref|YP_008377076.1| - 5.3e-61 205.9 0.0 6.3e-61 205.6 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family DDE_Tnp_1 PF01609.16 gi|529078074|ref|YP_008377077.1| - 2.7e-13 49.9 0.1 4.6e-13 49.1 0.1 1.4 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|529078074|ref|YP_008377077.1| - 2.7e-09 37.0 0.1 4.1e-09 36.4 0.1 1.4 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|529078074|ref|YP_008377077.1| - 0.00047 19.9 0.0 0.00062 19.5 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|529078074|ref|YP_008377077.1| - 0.0014 18.2 0.0 0.0015 18.1 0.0 1.1 1 0 0 1 1 1 1 DDE superfamily endonuclease TDH PF03347.8 gi|529078075|ref|YP_008377078.1| - 0.015 14.8 0.1 0.031 13.8 0.1 1.4 1 0 0 1 1 1 0 Vibrio thermostable direct hemolysin Binary_toxB PF03495.9 gi|529078075|ref|YP_008377078.1| - 0.36 9.3 3.6 1.4 7.4 0.3 2.3 1 1 1 2 2 2 0 Clostridial binary toxin B/anthrax toxin PA HEAT_2 PF13646.1 gi|529078076|ref|YP_008377079.1| - 0.00018 21.7 1.8 0.0016 18.6 0.8 2.3 1 1 1 2 2 2 1 HEAT repeats Lum_binding PF00677.12 gi|529078079|ref|YP_008377082.1| - 1.8e-40 136.6 0.2 2e-19 69.2 0.0 2.1 2 0 0 2 2 2 2 Lumazine binding domain DHBP_synthase PF00926.14 gi|529078080|ref|YP_008377083.1| - 1.4e-78 262.5 0.1 1.9e-78 262.1 0.1 1.2 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase GTP_cyclohydro2 PF00925.15 gi|529078080|ref|YP_008377083.1| - 6.1e-63 211.0 0.0 9.2e-62 207.2 0.0 2.1 2 0 0 2 2 2 1 GTP cyclohydrolase II DMRL_synthase PF00885.14 gi|529078081|ref|YP_008377084.1| - 1.2e-58 196.8 0.1 1.4e-58 196.6 0.1 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Fe_dep_repr_C PF02742.10 gi|529078082|ref|YP_008377085.1| - 2.7e-29 100.6 2.1 5.6e-29 99.6 1.5 1.6 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.14 gi|529078082|ref|YP_008377085.1| - 4.3e-17 61.7 0.1 1.1e-16 60.5 0.1 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain FeoA PF04023.9 gi|529078082|ref|YP_008377085.1| - 1.7e-12 47.1 0.1 2.9e-12 46.3 0.1 1.4 1 0 0 1 1 1 1 FeoA domain MarR_2 PF12802.2 gi|529078082|ref|YP_008377085.1| - 3e-07 30.0 0.1 1.5e-06 27.8 0.0 2.2 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|529078082|ref|YP_008377085.1| - 2.1e-06 27.3 0.0 4.4e-06 26.3 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|529078082|ref|YP_008377085.1| - 6.7e-05 22.4 0.0 0.0002 20.8 0.0 1.8 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|529078082|ref|YP_008377085.1| - 0.00023 20.8 0.0 0.00054 19.7 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_27 PF13463.1 gi|529078082|ref|YP_008377085.1| - 0.00032 20.9 0.2 0.0025 18.0 0.0 2.5 2 1 1 3 3 3 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|529078082|ref|YP_008377085.1| - 0.00055 19.6 0.0 0.0024 17.6 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|529078082|ref|YP_008377085.1| - 0.0015 18.5 0.0 0.0041 17.2 0.0 1.8 2 0 0 2 2 1 1 Transcriptional regulator Crp PF00325.15 gi|529078082|ref|YP_008377085.1| - 0.002 17.5 0.0 0.0069 15.8 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, crp family HTH_12 PF08461.5 gi|529078082|ref|YP_008377085.1| - 0.0037 16.9 0.2 0.017 14.8 0.1 2.2 1 1 1 2 2 2 1 Ribonuclease R winged-helix domain HTH_1 PF00126.22 gi|529078082|ref|YP_008377085.1| - 0.0057 16.3 0.0 0.017 14.8 0.0 1.9 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family GntR PF00392.16 gi|529078082|ref|YP_008377085.1| - 0.0092 15.3 0.0 0.021 14.2 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_23 PF13384.1 gi|529078082|ref|YP_008377085.1| - 0.023 14.3 0.0 0.23 11.1 0.0 2.2 2 0 0 2 2 2 0 Homeodomain-like domain HTH_DeoR PF08220.7 gi|529078082|ref|YP_008377085.1| - 0.032 13.7 0.0 0.34 10.4 0.0 2.4 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain TrmB PF01978.14 gi|529078082|ref|YP_008377085.1| - 0.034 13.8 0.0 0.24 11.1 0.0 2.1 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|529078082|ref|YP_008377085.1| - 0.076 12.4 0.0 0.16 11.4 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding UPF0016 PF01169.14 gi|529078083|ref|YP_008377086.1| - 5.8e-24 84.0 15.7 6.8e-15 54.9 2.7 2.5 2 0 0 2 2 2 2 Uncharacterized protein family UPF0016 Fe_dep_repress PF01325.14 gi|529078084|ref|YP_008377087.1| - 2.6e-10 40.0 0.0 5e-10 39.1 0.0 1.5 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.2 gi|529078084|ref|YP_008377087.1| - 9.2e-05 22.0 0.0 0.00017 21.2 0.0 1.4 1 0 0 1 1 1 1 MarR family Fe_dep_repr_C PF02742.10 gi|529078084|ref|YP_008377087.1| - 0.00093 18.8 0.1 0.0029 17.2 0.0 1.8 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain HTH_Crp_2 PF13545.1 gi|529078084|ref|YP_008377087.1| - 0.016 14.9 0.0 0.031 14.0 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_20 PF12840.2 gi|529078084|ref|YP_008377087.1| - 0.024 14.4 0.0 0.052 13.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.14 gi|529078084|ref|YP_008377087.1| - 0.026 14.2 0.0 0.043 13.5 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|529078084|ref|YP_008377087.1| - 0.028 14.1 0.0 0.058 13.0 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.1 gi|529078084|ref|YP_008377087.1| - 0.13 12.5 0.0 0.23 11.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF347 PF03988.7 gi|529078085|ref|YP_008377088.1| - 3.6 7.5 8.5 0.39 10.6 1.3 2.0 1 1 1 2 2 2 0 Repeat of Unknown Function (DUF347) EamA PF00892.15 gi|529078086|ref|YP_008377089.1| - 2e-33 115.0 25.0 2.5e-17 63.0 6.8 2.1 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.11 gi|529078086|ref|YP_008377089.1| - 0.002 17.7 14.8 0.23 11.1 0.8 2.7 2 1 0 2 2 2 2 Triose-phosphate Transporter family EmrE PF13536.1 gi|529078086|ref|YP_008377089.1| - 0.0057 16.8 4.8 0.0057 16.8 3.3 3.8 1 1 3 4 4 4 1 Multidrug resistance efflux transporter CBS PF00571.23 gi|529078087|ref|YP_008377090.1| - 2.3e-27 94.4 5.4 9.2e-15 54.1 0.5 2.1 2 0 0 2 2 2 2 CBS domain H_kinase_N PF12282.3 gi|529078087|ref|YP_008377090.1| - 0.0066 16.0 0.1 3.2 7.3 0.0 2.3 2 0 0 2 2 2 2 Signal transduction histidine kinase PB1 PF00564.19 gi|529078087|ref|YP_008377090.1| - 0.018 14.6 0.3 2.8 7.6 0.0 2.9 2 1 0 2 2 2 0 PB1 domain DUF502 PF04367.8 gi|529078088|ref|YP_008377091.1| - 5.5e-19 67.9 0.4 1.1e-18 66.9 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF502) Fig1 PF12351.3 gi|529078088|ref|YP_008377091.1| - 0.02 14.7 0.9 0.024 14.5 0.7 1.1 1 0 0 1 1 1 0 Ca2+ regulator and membrane fusion protein Fig1 Aminotran_4 PF01063.14 gi|529078089|ref|YP_008377092.1| - 7.2e-45 153.2 0.0 8.5e-45 153.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class IV PIN PF01850.16 gi|529078090|ref|YP_008377093.1| - 1.9e-10 41.1 0.1 2.2e-10 40.9 0.0 1.0 1 0 0 1 1 1 1 PIN domain HTH_AsnC-type PF13404.1 gi|529078091|ref|YP_008377094.1| - 9e-06 25.1 0.2 8.8e-05 21.9 0.1 2.1 1 1 1 2 2 2 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.2 gi|529078091|ref|YP_008377094.1| - 1.2e-05 24.9 0.0 7.6e-05 22.4 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|529078091|ref|YP_008377094.1| - 5e-05 22.9 0.0 7.7e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|529078091|ref|YP_008377094.1| - 0.00012 21.6 0.1 0.00025 20.6 0.0 1.5 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|529078091|ref|YP_008377094.1| - 0.0012 18.1 0.0 0.0019 17.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.14 gi|529078091|ref|YP_008377094.1| - 0.0039 17.1 0.0 0.0061 16.4 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.15 gi|529078091|ref|YP_008377094.1| - 0.007 16.4 0.0 0.0091 16.1 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator Mnd1 PF03962.10 gi|529078091|ref|YP_008377094.1| - 0.02 14.5 0.0 0.026 14.1 0.0 1.1 1 0 0 1 1 1 0 Mnd1 family HTH_10 PF04967.7 gi|529078091|ref|YP_008377094.1| - 0.023 14.2 0.0 0.039 13.5 0.0 1.3 1 0 0 1 1 1 0 HTH DNA binding domain MarR PF01047.17 gi|529078091|ref|YP_008377094.1| - 0.023 14.4 0.0 0.036 13.7 0.0 1.4 1 0 0 1 1 1 0 MarR family FaeA PF04703.7 gi|529078091|ref|YP_008377094.1| - 0.025 14.7 0.0 0.037 14.2 0.0 1.2 1 0 0 1 1 1 0 FaeA-like protein HTH_CodY PF08222.6 gi|529078091|ref|YP_008377094.1| - 0.055 12.8 0.0 0.082 12.2 0.0 1.3 1 0 0 1 1 1 0 CodY helix-turn-helix domain DUF387 PF04079.11 gi|529078091|ref|YP_008377094.1| - 0.062 12.6 0.0 0.075 12.3 0.0 1.1 1 0 0 1 1 1 0 Putative transcriptional regulators (Ypuh-like) HTH_23 PF13384.1 gi|529078091|ref|YP_008377094.1| - 0.064 12.9 0.0 0.099 12.3 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain HTH_34 PF13601.1 gi|529078091|ref|YP_008377094.1| - 0.11 12.5 0.0 0.15 12.1 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|529078091|ref|YP_008377094.1| - 0.11 12.1 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family CTP-dep_RFKase PF01982.11 gi|529078092|ref|YP_008377095.1| - 4.8e-41 139.1 0.0 7.2e-41 138.6 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF120 MarR PF01047.17 gi|529078092|ref|YP_008377095.1| - 0.00044 19.9 0.0 0.00078 19.1 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|529078092|ref|YP_008377095.1| - 0.00061 19.4 0.3 0.0012 18.5 0.2 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|529078092|ref|YP_008377095.1| - 0.0014 17.9 0.0 0.0026 17.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|529078092|ref|YP_008377095.1| - 0.0025 17.5 0.4 0.0062 16.3 0.3 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|529078092|ref|YP_008377095.1| - 0.0033 16.9 0.3 0.0097 15.4 0.2 1.9 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|529078092|ref|YP_008377095.1| - 0.0061 16.1 0.1 0.011 15.3 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_34 PF13601.1 gi|529078092|ref|YP_008377095.1| - 0.012 15.5 0.0 0.028 14.4 0.0 1.6 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|529078092|ref|YP_008377095.1| - 0.056 13.7 0.2 0.1 12.9 0.2 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|529078092|ref|YP_008377095.1| - 0.17 11.8 0.3 0.35 10.8 0.0 1.6 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain Radical_SAM PF04055.16 gi|529078093|ref|YP_008377096.1| - 3.7e-20 72.7 0.1 8e-20 71.6 0.1 1.5 1 1 0 1 1 1 1 Radical SAM superfamily Wyosine_form PF08608.7 gi|529078093|ref|YP_008377096.1| - 2.4e-16 59.5 0.1 6.4e-16 58.2 0.0 1.8 2 0 0 2 2 2 1 Wyosine base formation HAD_2 PF13419.1 gi|529078093|ref|YP_008377096.1| - 0.00019 21.6 0.4 0.012 15.7 0.0 2.3 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Fer4_14 PF13394.1 gi|529078093|ref|YP_008377096.1| - 0.015 15.3 0.3 0.085 12.8 0.2 2.0 1 1 0 1 1 1 0 4Fe-4S single cluster domain PemK PF02452.12 gi|529078094|ref|YP_008377097.1| - 2.7e-05 24.3 0.0 3.2e-05 24.1 0.0 1.0 1 0 0 1 1 1 1 PemK-like protein MarR_2 PF12802.2 gi|529078095|ref|YP_008377098.1| - 1.3e-07 31.2 0.0 1.7e-07 30.7 0.0 1.2 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.15 gi|529078095|ref|YP_008377098.1| - 0.00011 22.2 0.0 0.00015 21.7 0.0 1.1 1 0 0 1 1 1 1 Transcriptional regulator HTH_IclR PF09339.5 gi|529078095|ref|YP_008377098.1| - 0.00014 21.4 0.1 0.00022 20.7 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|529078095|ref|YP_008377098.1| - 0.00025 21.3 0.0 0.00034 20.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|529078095|ref|YP_008377098.1| - 0.00065 19.3 0.0 0.00095 18.8 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|529078095|ref|YP_008377098.1| - 0.0015 18.2 0.0 0.0023 17.6 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_20 PF12840.2 gi|529078095|ref|YP_008377098.1| - 0.0032 17.2 0.1 0.0051 16.5 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4423 PF14394.1 gi|529078095|ref|YP_008377098.1| - 0.0059 16.1 0.0 0.0092 15.5 0.0 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4423) GntR PF00392.16 gi|529078095|ref|YP_008377098.1| - 0.019 14.3 0.1 0.032 13.6 0.1 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Sulfolobus_pRN PF05584.6 gi|529078095|ref|YP_008377098.1| - 0.02 14.8 0.0 0.029 14.3 0.0 1.3 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein MarR PF01047.17 gi|529078095|ref|YP_008377098.1| - 0.022 14.4 0.0 0.034 13.8 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_5 PF01022.15 gi|529078095|ref|YP_008377098.1| - 0.024 14.3 0.1 0.035 13.7 0.1 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|529078095|ref|YP_008377098.1| - 0.043 13.2 0.0 0.066 12.6 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.14 gi|529078095|ref|YP_008377098.1| - 0.089 12.7 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF433 PF04255.9 gi|529078096|ref|YP_008377099.1| - 1.6e-16 59.4 0.1 1.9e-16 59.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF433) ADH_N PF08240.7 gi|529078097|ref|YP_008377100.1| - 7.1e-33 112.6 0.1 1.4e-32 111.7 0.1 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|529078097|ref|YP_008377100.1| - 9.9e-29 99.5 1.3 1.5e-28 98.9 0.9 1.2 1 0 0 1 1 1 1 Zinc-binding dehydrogenase NAD_binding_7 PF13241.1 gi|529078097|ref|YP_008377100.1| - 0.0057 16.8 0.4 0.01 16.1 0.3 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding TrkA_N PF02254.13 gi|529078097|ref|YP_008377100.1| - 0.026 14.5 0.6 0.054 13.4 0.3 1.5 1 1 0 1 1 1 0 TrkA-N domain Saccharop_dh PF03435.13 gi|529078097|ref|YP_008377100.1| - 0.038 12.9 0.5 0.054 12.4 0.4 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase Methyltransf_18 PF12847.2 gi|529078097|ref|YP_008377100.1| - 0.042 14.4 0.6 0.1 13.2 0.2 1.8 1 1 0 1 1 1 0 Methyltransferase domain NAD_binding_3 PF03447.11 gi|529078097|ref|YP_008377100.1| - 0.043 14.2 1.5 0.097 13.0 1.0 1.6 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain PrpR_N PF06506.6 gi|529078097|ref|YP_008377100.1| - 0.043 13.2 0.5 2.1 7.7 0.0 2.8 1 1 2 3 3 3 0 Propionate catabolism activator 2-Hacid_dh_C PF02826.14 gi|529078097|ref|YP_008377100.1| - 0.044 12.9 0.5 0.085 12.0 0.3 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|529078097|ref|YP_008377100.1| - 0.088 13.2 0.6 0.16 12.3 0.4 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent ThiF PF00899.16 gi|529078097|ref|YP_008377100.1| - 0.62 9.8 3.9 16 5.3 1.3 2.3 1 1 1 2 2 2 0 ThiF family 3HCDH_N PF02737.13 gi|529078097|ref|YP_008377100.1| - 0.65 9.6 3.8 1.3 8.5 2.5 1.6 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain tRNA-synt_1d PF00750.14 gi|529078098|ref|YP_008377101.1| - 2.1e-54 184.7 0.0 2.7e-54 184.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|529078098|ref|YP_008377101.1| - 3e-35 120.7 0.0 2.2e-34 117.9 0.0 2.3 2 0 0 2 2 2 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.11 gi|529078098|ref|YP_008377101.1| - 8.6e-07 29.4 0.0 2.3e-06 28.0 0.0 1.7 1 0 0 1 1 1 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.13 gi|529078098|ref|YP_008377101.1| - 0.0058 15.3 0.0 0.041 12.5 0.0 2.0 2 0 0 2 2 2 1 tRNA synthetases class I (K) DUF3194 PF11419.3 gi|529078098|ref|YP_008377101.1| - 0.065 13.4 0.2 1.2 9.3 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3194) tRNA-synt_1g PF09334.6 gi|529078098|ref|YP_008377101.1| - 0.088 11.4 0.0 10 4.6 0.0 2.8 2 1 1 3 3 3 0 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|529078098|ref|YP_008377101.1| - 0.17 11.0 0.0 0.27 10.3 0.0 1.3 1 0 0 1 1 1 0 tRNA synthetases class I (C) catalytic domain CbiA PF01656.18 gi|529078099|ref|YP_008377102.1| - 5.4e-27 94.4 2.8 6.8e-27 94.1 1.9 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|529078099|ref|YP_008377102.1| - 2.6e-16 59.9 0.0 3.6e-16 59.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|529078099|ref|YP_008377102.1| - 1.8e-09 37.0 0.3 3.8e-09 36.0 0.2 1.4 1 1 0 1 1 1 1 ATPase MipZ YhjQ PF06564.7 gi|529078099|ref|YP_008377102.1| - 3.7e-06 26.4 0.1 5.5e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 YhjQ protein ArsA_ATPase PF02374.10 gi|529078099|ref|YP_008377102.1| - 8.5e-06 25.0 3.7 1.8e-05 23.9 1.2 2.0 1 1 1 2 2 2 1 Anion-transporting ATPase Fer4_NifH PF00142.13 gi|529078099|ref|YP_008377102.1| - 8.1e-05 21.9 0.0 0.024 13.8 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ParA PF10609.4 gi|529078099|ref|YP_008377102.1| - 0.00021 21.1 0.2 0.00047 19.9 0.1 1.6 1 0 0 1 1 1 1 ParA/MinD ATPase like SRP54 PF00448.17 gi|529078099|ref|YP_008377102.1| - 0.00034 20.1 0.5 0.077 12.4 0.1 2.2 2 0 0 2 2 2 2 SRP54-type protein, GTPase domain MobB PF03205.9 gi|529078099|ref|YP_008377102.1| - 0.0038 16.9 1.0 0.11 12.1 0.7 2.3 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_26 PF13500.1 gi|529078099|ref|YP_008377102.1| - 0.0092 15.6 2.7 0.095 12.2 1.9 2.5 1 1 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|529078099|ref|YP_008377102.1| - 0.029 13.1 3.8 0.76 8.4 0.5 2.1 2 0 0 2 2 2 0 ArgK protein AAA_24 PF13479.1 gi|529078099|ref|YP_008377102.1| - 0.079 12.5 0.2 0.14 11.7 0.2 1.3 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|529078099|ref|YP_008377102.1| - 0.14 11.5 0.0 0.2 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain VirC1 PF07015.6 gi|529078099|ref|YP_008377102.1| - 0.18 10.8 0.7 1.3 8.0 0.1 2.1 2 0 0 2 2 2 0 VirC1 protein AAA_25 PF13481.1 gi|529078099|ref|YP_008377102.1| - 0.24 10.7 4.2 0.27 10.6 1.4 2.1 2 1 0 2 2 2 0 AAA domain eRF1_2 PF03464.10 gi|529078100|ref|YP_008377103.1| - 1.8e-35 122.1 0.0 4.3e-35 120.9 0.0 1.7 2 0 0 2 2 2 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|529078100|ref|YP_008377103.1| - 4.4e-29 101.0 0.5 1e-28 99.8 0.1 1.8 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|529078100|ref|YP_008377103.1| - 5.7e-23 80.9 0.0 9.7e-23 80.1 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 DUF4109 PF13397.1 gi|529078100|ref|YP_008377103.1| - 0.011 16.0 0.4 0.036 14.4 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4109) Zn-ribbon_8 PF09723.5 gi|529078100|ref|YP_008377103.1| - 0.051 13.5 1.1 0.13 12.2 0.8 1.6 1 0 0 1 1 1 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|529078100|ref|YP_008377103.1| - 0.53 9.6 2.9 1.4 8.3 2.0 1.7 1 0 0 1 1 1 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|529078101|ref|YP_008377104.1| - 0.044 13.0 2.5 0.43 9.8 1.7 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|529078101|ref|YP_008377104.1| - 0.13 11.7 1.8 7 6.2 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|529078101|ref|YP_008377104.1| - 0.35 10.2 3.2 3 7.2 2.2 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding UPF0278 PF08745.6 gi|529078102|ref|YP_008377105.1| - 4.7e-82 274.2 1.0 5.3e-82 274.0 0.7 1.0 1 0 0 1 1 1 1 UPF0278 family DUF4411 PF14367.1 gi|529078102|ref|YP_008377105.1| - 0.0014 18.3 0.3 1.3 8.6 0.0 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF4411) PIN_3 PF13470.1 gi|529078102|ref|YP_008377105.1| - 0.012 16.3 1.7 0.049 14.2 1.2 2.0 1 1 0 1 1 1 0 PIN domain CorA PF01544.13 gi|529078102|ref|YP_008377105.1| - 0.47 9.4 2.6 0.2 10.6 0.3 1.5 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein AlaDh_PNT_C PF01262.16 gi|529078103|ref|YP_008377106.1| - 3.8e-49 166.4 1.7 5.2e-49 166.0 1.2 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain AlaDh_PNT_N PF05222.10 gi|529078103|ref|YP_008377106.1| - 4.3e-36 123.9 0.5 3.3e-35 121.0 0.0 2.2 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, N-terminal domain 2-Hacid_dh_C PF02826.14 gi|529078103|ref|YP_008377106.1| - 5.9e-06 25.5 0.0 0.0043 16.2 0.0 2.6 2 1 1 3 3 3 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.9 gi|529078103|ref|YP_008377106.1| - 0.00073 19.4 0.2 0.0012 18.7 0.1 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_2 PF03446.10 gi|529078103|ref|YP_008377106.1| - 0.0046 16.8 0.5 0.021 14.6 0.3 2.0 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.13 gi|529078103|ref|YP_008377106.1| - 0.0047 16.5 1.1 0.01 15.5 0.8 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HI0933_like PF03486.9 gi|529078103|ref|YP_008377106.1| - 0.0064 15.0 0.1 0.035 12.5 0.0 2.1 3 0 0 3 3 3 1 HI0933-like protein XdhC_C PF13478.1 gi|529078103|ref|YP_008377106.1| - 0.0066 16.7 0.7 1.3 9.2 0.1 2.8 2 1 1 3 3 3 1 XdhC Rossmann domain GIDA PF01134.17 gi|529078103|ref|YP_008377106.1| - 0.0082 15.0 0.2 0.013 14.4 0.1 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A TrkA_N PF02254.13 gi|529078103|ref|YP_008377106.1| - 0.014 15.3 1.1 0.036 14.0 0.2 2.2 2 0 0 2 2 1 0 TrkA-N domain NAD_binding_8 PF13450.1 gi|529078103|ref|YP_008377106.1| - 0.022 14.7 0.3 0.15 12.0 0.1 2.3 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Shikimate_DH PF01488.15 gi|529078103|ref|YP_008377106.1| - 0.05 13.7 0.3 3.7 7.6 0.0 2.5 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase ADH_zinc_N PF00107.21 gi|529078103|ref|YP_008377106.1| - 0.11 12.0 1.2 0.34 10.4 0.9 1.9 1 1 0 1 1 1 0 Zinc-binding dehydrogenase DUF3814 PF12769.2 gi|529078104|ref|YP_008377107.1| - 5.4e-31 106.5 7.9 6.1e-31 106.4 5.5 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF3814) DUF485 PF04341.7 gi|529078104|ref|YP_008377107.1| - 0.068 12.8 8.0 0.37 10.5 0.7 2.1 1 1 1 2 2 2 0 Protein of unknown function, DUF485 BofA PF07441.6 gi|529078104|ref|YP_008377107.1| - 0.27 11.2 8.4 0.15 12.0 2.2 2.1 2 0 0 2 2 2 0 SigmaK-factor processing regulatory protein BofA PNTB PF02233.11 gi|529078105|ref|YP_008377108.1| - 4.8e-153 510.2 13.0 5.5e-153 510.0 9.0 1.0 1 0 0 1 1 1 1 NAD(P) transhydrogenase beta subunit TPP_enzyme_M PF00205.17 gi|529078105|ref|YP_008377108.1| - 0.0027 17.4 0.3 0.098 12.4 0.1 2.7 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain PseudoU_synth_1 PF01416.15 gi|529078106|ref|YP_008377109.1| - 4e-17 62.5 0.0 1.3e-09 38.4 0.0 2.2 2 0 0 2 2 2 2 tRNA pseudouridine synthase HAD_2 PF13419.1 gi|529078107|ref|YP_008377110.1| - 4.3e-12 46.6 0.3 5.3e-12 46.3 0.2 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|529078107|ref|YP_008377110.1| - 0.00068 19.3 0.1 0.0016 18.1 0.1 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|529078107|ref|YP_008377110.1| - 0.035 14.5 0.0 0.43 10.9 0.0 2.1 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase tRNA-synt_His PF13393.1 gi|529078110|ref|YP_008377113.1| - 4.1e-55 187.0 0.3 5.4e-55 186.6 0.2 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|529078110|ref|YP_008377113.1| - 2.3e-23 82.6 0.0 3.4e-23 82.0 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|529078110|ref|YP_008377113.1| - 3.8e-14 52.3 0.0 7.3e-14 51.4 0.0 1.4 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2d PF01409.15 gi|529078110|ref|YP_008377113.1| - 0.062 12.4 0.0 0.14 11.3 0.0 1.4 1 1 0 1 1 1 0 tRNA synthetases class II core domain (F) Asn_synthase PF00733.16 gi|529078111|ref|YP_008377114.1| - 5.1e-05 22.9 0.1 7.8e-05 22.2 0.1 1.3 1 0 0 1 1 1 1 Asparagine synthase PAPS_reduct PF01507.14 gi|529078111|ref|YP_008377114.1| - 0.014 15.1 0.0 0.034 13.9 0.0 1.6 1 1 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.12 gi|529078111|ref|YP_008377114.1| - 0.021 13.7 0.0 0.03 13.2 0.0 1.3 1 0 0 1 1 1 0 NAD synthase IU_nuc_hydro PF01156.14 gi|529078111|ref|YP_008377114.1| - 0.079 12.1 0.1 0.087 12.0 0.0 1.1 1 0 0 1 1 1 0 Inosine-uridine preferring nucleoside hydrolase Lipase_GDSL_2 PF13472.1 gi|529078111|ref|YP_008377114.1| - 0.093 12.8 0.2 0.13 12.3 0.2 1.2 1 0 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family CobD_Cbib PF03186.8 gi|529078111|ref|YP_008377114.1| - 0.11 11.5 0.1 0.15 11.0 0.1 1.1 1 0 0 1 1 1 0 CobD/Cbib protein dsDNA_bind PF01984.15 gi|529078112|ref|YP_008377115.1| - 2.7e-29 101.2 8.6 3.2e-29 101.0 6.0 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain PCI PF01399.22 gi|529078112|ref|YP_008377115.1| - 0.12 12.7 0.5 0.24 11.7 0.1 1.7 2 1 0 2 2 2 0 PCI domain FerA PF08165.6 gi|529078112|ref|YP_008377115.1| - 0.13 11.9 1.9 0.3 10.7 0.4 2.2 3 0 0 3 3 3 0 FerA (NUC095) domain Rho_N PF07498.7 gi|529078112|ref|YP_008377115.1| - 0.19 11.5 2.0 0.58 9.9 0.3 2.4 2 1 0 2 2 2 0 Rho termination factor, N-terminal domain Ribosomal_S19e PF01090.14 gi|529078113|ref|YP_008377116.1| - 3.2e-48 162.7 0.0 3.6e-48 162.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e GntR PF00392.16 gi|529078113|ref|YP_008377116.1| - 0.00067 19.0 0.0 0.0026 17.1 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_45 PF14947.1 gi|529078113|ref|YP_008377116.1| - 0.019 14.7 0.0 0.23 11.2 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix TrmB PF01978.14 gi|529078113|ref|YP_008377116.1| - 0.025 14.2 0.2 0.53 10.0 0.0 2.4 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|529078113|ref|YP_008377116.1| - 0.099 12.7 0.0 0.22 11.6 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator Mrr_N PF14338.1 gi|529078113|ref|YP_008377116.1| - 0.19 11.8 0.6 0.78 9.8 0.0 2.2 2 1 0 2 2 2 0 Mrr N-terminal domain UPF0104 PF03706.8 gi|529078114|ref|YP_008377117.1| - 1.2e-27 96.9 35.6 1.7e-27 96.5 24.7 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) AIRS PF00586.19 gi|529078115|ref|YP_008377118.1| - 1.4e-15 57.3 4.7 3.3e-15 56.0 3.3 1.7 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|529078115|ref|YP_008377118.1| - 7.8e-11 42.1 0.0 1.1e-10 41.7 0.0 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain PglZ PF08665.7 gi|529078116|ref|YP_008377119.1| - 0.13 11.8 0.0 0.3 10.7 0.0 1.5 2 0 0 2 2 2 0 PglZ domain Peptidase_M50 PF02163.17 gi|529078117|ref|YP_008377120.1| - 4.3e-19 68.2 1.0 1.4e-17 63.3 0.7 2.3 1 1 0 1 1 1 1 Peptidase family M50 AA_kinase PF00696.23 gi|529078119|ref|YP_008377122.1| - 1.9e-33 115.9 3.4 2.3e-33 115.7 2.4 1.1 1 0 0 1 1 1 1 Amino acid kinase family Glyco_trans_4_4 PF13579.1 gi|529078119|ref|YP_008377122.1| - 0.054 13.6 1.4 0.11 12.6 1.0 1.7 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain HAD PF12710.2 gi|529078119|ref|YP_008377122.1| - 0.086 12.9 0.0 0.2 11.8 0.0 1.5 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase tRNA-synt_1f PF01921.13 gi|529078120|ref|YP_008377123.1| - 1e-97 327.0 0.0 1.4e-97 326.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|529078120|ref|YP_008377123.1| - 5e-10 38.5 0.0 1.3e-05 24.0 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|529078120|ref|YP_008377123.1| - 6.5e-05 22.1 0.0 0.003 16.7 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain DUF4350 PF14258.1 gi|529078120|ref|YP_008377123.1| - 0.04 14.1 0.3 4.7 7.5 0.0 3.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4350) Peptidase_M50 PF02163.17 gi|529078121|ref|YP_008377124.1| - 9.6e-28 96.4 0.4 9.6e-28 96.4 0.3 1.8 2 0 0 2 2 2 1 Peptidase family M50 PDZ_2 PF13180.1 gi|529078121|ref|YP_008377124.1| - 6.5e-21 74.0 1.1 2.8e-07 30.3 0.0 3.3 2 1 1 3 3 3 3 PDZ domain PDZ PF00595.19 gi|529078121|ref|YP_008377124.1| - 1.9e-12 47.1 1.1 7.9e-06 25.9 0.1 3.3 1 1 2 3 3 3 2 PDZ domain (Also known as DHR or GLGF) Tricorn_PDZ PF14685.1 gi|529078121|ref|YP_008377124.1| - 1.4e-10 40.7 2.9 0.0039 16.9 0.1 3.4 2 1 1 3 3 3 3 Tricorn protease PDZ domain DUF650 PF04894.7 gi|529078122|ref|YP_008377125.1| - 1.8e-103 345.7 0.0 2.2e-103 345.4 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|529078122|ref|YP_008377125.1| - 1.3e-32 111.6 0.1 1.8e-31 107.9 0.0 2.8 3 1 0 3 3 3 1 Archaeal protein of unknown function (DUF651) VWA_2 PF13519.1 gi|529078125|ref|YP_008377128.1| - 2.4e-30 105.9 3.4 2.4e-30 105.9 2.4 2.3 3 0 0 3 3 3 1 von Willebrand factor type A domain VWA PF00092.23 gi|529078125|ref|YP_008377128.1| - 5.6e-23 81.5 2.3 7.9e-23 81.0 0.4 2.2 2 0 0 2 2 2 1 von Willebrand factor type A domain DUF2201 PF09967.4 gi|529078125|ref|YP_008377128.1| - 0.00015 21.7 0.3 0.00056 19.9 0.0 2.1 2 0 0 2 2 2 1 VWA-like domain (DUF2201) VWA_CoxE PF05762.9 gi|529078125|ref|YP_008377128.1| - 0.016 14.3 0.5 0.04 13.0 0.0 1.8 2 0 0 2 2 2 0 VWA domain containing CoxE-like protein TrmB PF01978.14 gi|529078126|ref|YP_008377129.1| - 1.2e-18 66.5 0.0 2.1e-18 65.7 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|529078126|ref|YP_008377129.1| - 0.00043 19.8 0.1 0.00072 19.0 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Rrf2 PF02082.15 gi|529078126|ref|YP_008377129.1| - 0.00049 20.1 0.0 0.00087 19.3 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_34 PF13601.1 gi|529078126|ref|YP_008377129.1| - 0.0042 17.0 0.0 0.0068 16.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|529078126|ref|YP_008377129.1| - 0.0092 15.7 0.1 0.027 14.2 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain Amidohydro_4 PF13147.1 gi|529078126|ref|YP_008377129.1| - 0.015 15.3 0.1 0.021 14.8 0.1 1.2 1 0 0 1 1 1 0 Amidohydrolase MarR_2 PF12802.2 gi|529078126|ref|YP_008377129.1| - 0.022 14.4 0.0 0.045 13.4 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.1 gi|529078126|ref|YP_008377129.1| - 0.13 11.6 0.0 0.23 10.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_29 PF13551.1 gi|529078126|ref|YP_008377129.1| - 0.13 12.3 0.0 0.23 11.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix Aminotran_3 PF00202.16 gi|529078127|ref|YP_008377130.1| - 9.2e-69 231.8 0.0 1.2e-68 231.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|529078127|ref|YP_008377130.1| - 1.6e-05 24.0 0.0 3.8e-05 22.8 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class I and II TPR_1 PF00515.23 gi|529078127|ref|YP_008377130.1| - 0.02 14.4 0.3 1.2 8.8 0.5 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_2 PF07719.12 gi|529078127|ref|YP_008377130.1| - 0.054 13.4 1.0 8.3 6.5 0.7 2.4 2 0 0 2 2 2 0 Tetratricopeptide repeat DDE_Tnp_1 PF01609.16 gi|529078129|ref|YP_008377132.1| - 0.003 17.1 0.0 0.013 15.0 0.0 1.9 1 1 0 1 1 1 1 Transposase DDE domain Methyltransf_23 PF13489.1 gi|529078130|ref|YP_008377133.1| - 3.4e-12 46.3 0.0 3.9e-12 46.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|529078130|ref|YP_008377133.1| - 8.7e-12 45.3 0.0 1.4e-11 44.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|529078130|ref|YP_008377133.1| - 4.1e-08 32.8 0.0 5.5e-08 32.4 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_25 PF13649.1 gi|529078130|ref|YP_008377133.1| - 5.5e-08 33.0 0.0 1.2e-07 31.9 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|529078130|ref|YP_008377133.1| - 1.1e-07 32.3 0.1 1.9e-07 31.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|529078130|ref|YP_008377133.1| - 1.2e-07 31.4 0.0 1.5e-07 31.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|529078130|ref|YP_008377133.1| - 5.6e-07 29.9 0.0 9.8e-07 29.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|529078130|ref|YP_008377133.1| - 8.3e-07 29.0 0.0 1.3e-06 28.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.6 gi|529078130|ref|YP_008377133.1| - 7.2e-05 21.6 0.0 9.2e-05 21.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) DUF938 PF06080.7 gi|529078130|ref|YP_008377133.1| - 0.037 13.5 0.0 0.078 12.5 0.0 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF938) TehB PF03848.9 gi|529078130|ref|YP_008377133.1| - 0.077 12.1 0.0 0.095 11.8 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_17 PF12692.2 gi|529078130|ref|YP_008377133.1| - 0.1 12.3 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 S-adenosyl-L-methionine methyltransferase Methyltransf_4 PF02390.12 gi|529078130|ref|YP_008377133.1| - 0.11 11.5 0.0 0.17 10.9 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase Methyltransf_PK PF05891.7 gi|529078130|ref|YP_008377133.1| - 0.14 11.4 0.0 0.16 11.2 0.0 1.1 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase Cupin_2 PF07883.6 gi|529078131|ref|YP_008377134.1| - 2.6e-13 49.2 0.1 3.5e-13 48.8 0.0 1.1 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|529078131|ref|YP_008377134.1| - 4.8e-08 32.7 0.0 5.9e-08 32.4 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.7 gi|529078131|ref|YP_008377134.1| - 0.00018 20.7 0.0 0.00024 20.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF861) AraC_binding_2 PF14525.1 gi|529078131|ref|YP_008377134.1| - 0.00034 20.2 0.1 0.00046 19.7 0.1 1.2 1 1 0 1 1 1 1 AraC-binding-like domain Cupin_6 PF12852.2 gi|529078131|ref|YP_008377134.1| - 0.0025 17.4 0.1 0.0029 17.2 0.1 1.2 1 0 0 1 1 1 1 Cupin DUF2917 PF11142.3 gi|529078131|ref|YP_008377134.1| - 0.0027 16.8 0.0 0.0044 16.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2917) MannoseP_isomer PF01050.13 gi|529078131|ref|YP_008377134.1| - 0.0051 16.4 0.0 0.0056 16.2 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase DUF1255 PF06865.6 gi|529078131|ref|YP_008377134.1| - 0.007 16.6 0.0 0.0095 16.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1255) KduI PF04962.7 gi|529078131|ref|YP_008377134.1| - 0.0093 15.0 0.0 0.011 14.8 0.0 1.1 1 0 0 1 1 1 1 KduI/IolB family Lysine_decarbox PF03641.9 gi|529078132|ref|YP_008377135.1| - 1.8e-08 34.2 0.3 2.9e-08 33.5 0.2 1.4 1 1 0 1 1 1 1 Possible lysine decarboxylase DNA_processg_A PF02481.10 gi|529078132|ref|YP_008377135.1| - 2.3e-07 29.9 2.2 1.6e-05 23.9 0.5 2.0 1 1 1 2 2 2 2 DNA recombination-mediator protein A Nuc_deoxyrib_tr PF05014.10 gi|529078132|ref|YP_008377135.1| - 0.013 15.3 0.1 0.017 14.9 0.1 1.4 1 1 0 1 1 1 0 Nucleoside 2-deoxyribosyltransferase MoCo_carrier PF12694.2 gi|529078132|ref|YP_008377135.1| - 0.097 12.1 0.7 0.13 11.7 0.5 1.2 1 0 0 1 1 1 0 Putative molybdenum carrier Glyco_hydro_11 PF00457.12 gi|529078136|ref|YP_008377139.1| - 1.7e-74 249.1 15.0 1.7e-74 249.1 10.4 2.8 2 1 1 3 3 3 2 Glycosyl hydrolases family 11 RicinB_lectin_2 PF14200.1 gi|529078136|ref|YP_008377139.1| - 9.4e-34 115.9 15.9 2.4e-25 88.9 4.4 3.2 1 1 1 3 3 3 2 Ricin-type beta-trefoil lectin domain-like Ricin_B_lectin PF00652.17 gi|529078136|ref|YP_008377139.1| - 5.4e-16 58.7 14.6 4e-15 55.9 8.5 3.1 2 1 0 2 2 2 1 Ricin-type beta-trefoil lectin domain TAT_signal PF10518.4 gi|529078136|ref|YP_008377139.1| - 0.022 14.7 3.2 0.022 14.7 2.2 1.9 1 1 1 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Glyco_hydro_11 PF00457.12 gi|529078137|ref|YP_008377140.1| - 3.9e-75 251.2 16.8 3.9e-75 251.2 11.7 2.6 3 0 0 3 3 3 1 Glycosyl hydrolases family 11 CBM_6 PF03422.10 gi|529078137|ref|YP_008377140.1| - 1.4e-21 76.9 6.8 1.4e-21 76.9 4.7 4.9 4 4 4 8 8 8 1 Carbohydrate binding module (family 6) PKD PF00801.15 gi|529078137|ref|YP_008377140.1| - 1.7e-07 30.8 4.7 1.7e-07 30.8 3.2 3.2 3 1 0 3 3 3 1 PKD domain TAT_signal PF10518.4 gi|529078137|ref|YP_008377140.1| - 0.045 13.7 0.8 0.12 12.4 0.5 1.8 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Peripla_BP_2 PF01497.13 gi|529078138|ref|YP_008377141.1| - 1.1e-26 93.4 0.0 1.7e-26 92.8 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein DUF1501 PF07394.7 gi|529078138|ref|YP_008377141.1| - 0.11 11.2 0.0 0.18 10.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1501) Usp PF00582.21 gi|529078139|ref|YP_008377142.1| - 1e-06 29.0 1.0 2e-06 28.0 0.7 1.5 1 1 0 1 1 1 1 Universal stress protein family DUF2914 PF11141.3 gi|529078140|ref|YP_008377143.1| - 0.45 10.0 3.0 1.2 8.6 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2914) ABC_tran PF00005.22 gi|529078141|ref|YP_008377144.1| - 9.9e-34 116.5 0.0 1.3e-33 116.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|529078141|ref|YP_008377144.1| - 3.2e-10 40.4 0.0 9.4e-05 22.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|529078141|ref|YP_008377144.1| - 6.5e-06 25.5 0.0 0.029 13.6 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|529078141|ref|YP_008377144.1| - 4.7e-05 22.8 0.9 8.9e-05 21.9 0.7 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|529078141|ref|YP_008377144.1| - 0.0013 17.9 0.2 0.0021 17.2 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|529078141|ref|YP_008377144.1| - 0.0014 18.1 0.6 0.0022 17.4 0.3 1.4 1 1 0 1 1 1 1 AAA-like domain AAA_16 PF13191.1 gi|529078141|ref|YP_008377144.1| - 0.0051 16.8 1.1 0.01 15.7 0.7 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|529078141|ref|YP_008377144.1| - 0.0082 15.5 0.3 0.0082 15.5 0.2 1.9 2 1 1 3 3 3 1 AAA domain AAA_19 PF13245.1 gi|529078141|ref|YP_008377144.1| - 0.011 15.4 3.9 0.16 11.7 0.4 2.8 2 1 0 2 2 2 0 Part of AAA domain AAA_17 PF13207.1 gi|529078141|ref|YP_008377144.1| - 0.012 16.4 1.2 0.032 15.0 0.8 2.1 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|529078141|ref|YP_008377144.1| - 0.017 15.2 0.5 0.035 14.2 0.3 1.8 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|529078141|ref|YP_008377144.1| - 0.026 14.3 1.3 0.082 12.7 0.9 1.9 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|529078141|ref|YP_008377144.1| - 0.037 13.9 0.1 0.41 10.5 0.1 2.4 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_18 PF13238.1 gi|529078141|ref|YP_008377144.1| - 0.046 14.0 0.9 0.32 11.3 0.6 2.1 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|529078141|ref|YP_008377144.1| - 0.048 13.6 0.2 0.24 11.3 0.1 2.0 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_23 PF13476.1 gi|529078141|ref|YP_008377144.1| - 0.068 13.4 0.1 0.1 12.9 0.1 1.2 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|529078141|ref|YP_008377144.1| - 0.12 11.7 0.3 0.25 10.7 0.2 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.1 gi|529078141|ref|YP_008377144.1| - 1 9.3 3.3 0.71 9.8 0.4 2.0 2 1 0 2 2 2 0 AAA domain MacB_PCD PF12704.2 gi|529078142|ref|YP_008377145.1| - 1.1e-31 110.2 5.3 1.1e-31 110.2 3.7 2.0 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|529078142|ref|YP_008377145.1| - 3.9e-26 91.1 6.8 3.9e-26 91.1 4.7 2.2 2 0 0 2 2 2 1 FtsX-like permease family UPF0182 PF03699.8 gi|529078142|ref|YP_008377145.1| - 0.064 11.1 0.4 0.1 10.5 0.3 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0182) DctQ PF04290.7 gi|529078142|ref|YP_008377145.1| - 4 7.2 9.6 3.1 7.5 0.1 2.6 2 1 0 2 2 2 0 Tripartite ATP-independent periplasmic transporters, DctQ component DNA_pol3_delta2 PF13177.1 gi|529078143|ref|YP_008377146.1| - 1e-10 41.5 0.0 1.7e-10 40.8 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase III, delta subunit Rep_fac_C PF08542.6 gi|529078143|ref|YP_008377146.1| - 1.1e-10 41.2 0.0 2.8e-10 40.0 0.0 1.7 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.24 gi|529078143|ref|YP_008377146.1| - 1.1e-08 35.3 0.0 2.1e-08 34.4 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|529078143|ref|YP_008377146.1| - 1.6e-08 34.7 0.0 5.4e-08 33.0 0.0 1.9 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|529078143|ref|YP_008377146.1| - 3.2e-08 33.7 0.4 6.4e-06 26.2 0.1 3.0 1 1 1 2 2 2 1 AAA ATPase domain AAA_14 PF13173.1 gi|529078143|ref|YP_008377146.1| - 4.7e-05 23.2 0.0 0.00013 21.8 0.0 1.7 1 1 0 1 1 1 1 AAA domain Sigma54_activat PF00158.21 gi|529078143|ref|YP_008377146.1| - 0.00019 20.9 0.0 0.011 15.1 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain NACHT PF05729.7 gi|529078143|ref|YP_008377146.1| - 0.00044 19.9 0.0 0.00076 19.1 0.0 1.4 1 0 0 1 1 1 1 NACHT domain T2SE PF00437.15 gi|529078143|ref|YP_008377146.1| - 0.00082 18.3 0.0 0.029 13.2 0.0 2.5 3 0 0 3 3 3 1 Type II/IV secretion system protein AAA_17 PF13207.1 gi|529078143|ref|YP_008377146.1| - 0.00086 20.1 0.0 0.0019 19.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|529078143|ref|YP_008377146.1| - 0.001 18.7 0.0 0.0016 18.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain DUF2075 PF09848.4 gi|529078143|ref|YP_008377146.1| - 0.0012 17.9 0.1 0.0022 17.0 0.0 1.4 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.1 gi|529078143|ref|YP_008377146.1| - 0.0022 17.6 0.1 0.0096 15.6 0.0 2.1 1 0 0 1 1 1 1 Part of AAA domain FtsK_SpoIIIE PF01580.13 gi|529078143|ref|YP_008377146.1| - 0.0033 16.9 0.0 0.01 15.3 0.0 1.8 2 0 0 2 2 1 1 FtsK/SpoIIIE family AAA_30 PF13604.1 gi|529078143|ref|YP_008377146.1| - 0.0065 16.0 0.2 0.015 14.9 0.2 1.7 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|529078143|ref|YP_008377146.1| - 0.0086 15.1 0.2 0.025 13.6 0.1 1.9 1 1 0 1 1 1 1 Zeta toxin AAA_10 PF12846.2 gi|529078143|ref|YP_008377146.1| - 0.013 14.9 0.3 0.064 12.6 0.2 2.0 1 1 0 1 1 1 0 AAA-like domain Viral_helicase1 PF01443.13 gi|529078143|ref|YP_008377146.1| - 0.014 14.9 0.0 0.021 14.3 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Se-cys_synth_N PF12390.3 gi|529078143|ref|YP_008377146.1| - 0.047 13.7 1.8 0.077 13.0 0.1 2.3 2 0 0 2 2 2 0 Selenocysteine synthase N terminal AAA_11 PF13086.1 gi|529078143|ref|YP_008377146.1| - 0.05 13.1 0.0 0.13 11.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain TIP49 PF06068.8 gi|529078143|ref|YP_008377146.1| - 0.051 12.2 0.0 1.5 7.4 0.0 2.1 2 0 0 2 2 2 0 TIP49 C-terminus AAA_33 PF13671.1 gi|529078143|ref|YP_008377146.1| - 0.065 13.1 0.1 0.14 12.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|529078143|ref|YP_008377146.1| - 0.074 12.4 0.0 0.22 10.8 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein OSCP PF00213.13 gi|529078143|ref|YP_008377146.1| - 0.095 12.5 0.2 0.25 11.2 0.1 1.7 1 1 0 1 1 1 0 ATP synthase delta (OSCP) subunit Sigma54_activ_2 PF14532.1 gi|529078143|ref|YP_008377146.1| - 0.096 12.7 0.0 0.48 10.4 0.0 1.9 2 0 0 2 2 2 0 Sigma-54 interaction domain Ribosomal_S24e PF01282.14 gi|529078144|ref|YP_008377147.1| - 1.2e-29 101.8 0.1 1.6e-29 101.5 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e Ribosomal_S27 PF01599.14 gi|529078145|ref|YP_008377148.1| - 3.7e-12 45.8 4.3 4.3e-12 45.6 3.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S27a RNA_POL_M_15KD PF02150.11 gi|529078145|ref|YP_008377148.1| - 0.0042 16.7 0.4 0.0066 16.1 0.3 1.3 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit FYVE PF01363.16 gi|529078145|ref|YP_008377148.1| - 0.0053 16.6 1.1 0.0061 16.4 0.8 1.1 1 0 0 1 1 1 1 FYVE zinc finger DZR PF12773.2 gi|529078145|ref|YP_008377148.1| - 0.0075 16.0 0.6 0.01 15.6 0.4 1.3 1 0 0 1 1 1 1 Double zinc ribbon IBR PF01485.16 gi|529078145|ref|YP_008377148.1| - 0.012 15.4 0.2 0.012 15.4 0.2 1.1 1 0 0 1 1 1 0 IBR domain zinc_ribbon_2 PF13240.1 gi|529078145|ref|YP_008377148.1| - 0.013 14.9 2.1 0.63 9.6 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|529078145|ref|YP_008377148.1| - 0.015 14.9 4.3 1.3 8.7 0.4 2.1 2 0 0 2 2 2 0 Nudix N-terminal zf-RING_3 PF14369.1 gi|529078145|ref|YP_008377148.1| - 0.016 15.2 0.3 0.016 15.2 0.2 1.9 1 1 1 2 2 2 0 zinc-finger Prok-RING_1 PF14446.1 gi|529078145|ref|YP_008377148.1| - 0.016 14.9 0.7 0.02 14.5 0.5 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Ribosomal_L37e PF01907.14 gi|529078145|ref|YP_008377148.1| - 0.018 14.8 0.9 0.023 14.4 0.7 1.3 1 0 0 1 1 1 0 Ribosomal protein L37e DNA_RNApol_7kD PF03604.8 gi|529078145|ref|YP_008377148.1| - 0.022 14.2 1.7 0.029 13.8 1.2 1.2 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit OrfB_Zn_ribbon PF07282.6 gi|529078145|ref|YP_008377148.1| - 0.022 14.4 1.3 0.024 14.2 0.9 1.1 1 0 0 1 1 1 0 Putative transposase DNA-binding domain NCD3G PF07562.9 gi|529078145|ref|YP_008377148.1| - 0.047 13.4 0.8 0.061 13.0 0.5 1.3 1 0 0 1 1 1 0 Nine Cysteines Domain of family 3 GPCR zf-ISL3 PF14690.1 gi|529078145|ref|YP_008377148.1| - 0.074 13.0 0.1 0.074 13.0 0.1 2.1 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc-ribbons_6 PF07191.7 gi|529078145|ref|YP_008377148.1| - 0.074 12.8 0.5 0.093 12.5 0.4 1.1 1 0 0 1 1 1 0 zinc-ribbons TF_Zn_Ribbon PF08271.7 gi|529078145|ref|YP_008377148.1| - 0.08 12.2 4.4 0.077 12.3 2.2 1.6 1 1 0 1 1 1 0 TFIIB zinc-binding Auto_anti-p27 PF06677.7 gi|529078145|ref|YP_008377148.1| - 0.13 12.0 3.2 0.31 10.8 2.3 1.5 1 1 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) HypA PF01155.14 gi|529078145|ref|YP_008377148.1| - 0.18 11.4 0.7 0.2 11.3 0.5 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|529078145|ref|YP_008377148.1| - 0.22 10.7 6.3 0.85 8.9 4.3 1.9 1 1 0 1 1 1 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|529078145|ref|YP_008377148.1| - 0.28 10.7 7.1 2 7.9 0.1 2.3 1 1 1 2 2 2 0 NADH pyrophosphatase zinc ribbon domain FeS PF04060.8 gi|529078145|ref|YP_008377148.1| - 0.29 10.7 1.9 0.41 10.2 0.2 1.9 2 0 0 2 2 2 0 Putative Fe-S cluster zinc_ribbon_5 PF13719.1 gi|529078145|ref|YP_008377148.1| - 0.3 10.7 3.1 8.7 6.0 2.1 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|529078145|ref|YP_008377148.1| - 0.46 10.2 3.6 13 5.5 2.5 2.1 1 1 0 1 1 1 0 zinc-ribbon domain DUF2082 PF09855.4 gi|529078145|ref|YP_008377148.1| - 0.56 10.0 4.3 1.8 8.4 0.2 2.5 2 1 1 3 3 3 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) RNHCP PF12647.2 gi|529078145|ref|YP_008377148.1| - 0.64 9.8 3.3 1.7 8.5 2.2 1.5 1 1 0 1 1 1 0 RNHCP domain Fer4_6 PF12837.2 gi|529078145|ref|YP_008377148.1| - 0.8 9.6 5.0 2.9 7.9 0.3 2.1 2 0 0 2 2 2 0 4Fe-4S binding domain Zn_Tnp_IS1595 PF12760.2 gi|529078145|ref|YP_008377148.1| - 0.81 9.5 5.2 5.2 6.9 3.6 1.9 1 1 0 1 1 1 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|529078145|ref|YP_008377148.1| - 1.1 9.3 5.1 2.6 8.0 0.5 2.1 1 1 1 2 2 2 0 Zinc ribbon domain zf-CSL PF05207.8 gi|529078145|ref|YP_008377148.1| - 2.5 7.6 6.4 14 5.3 4.4 1.9 1 1 0 1 1 1 0 CSL zinc finger zf-C2H2_3 PF13878.1 gi|529078145|ref|YP_008377148.1| - 4.3 6.9 6.0 6.1 6.4 0.3 2.2 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO adh_short PF00106.20 gi|529078146|ref|YP_008377149.1| - 3.2e-39 134.5 2.2 4.4e-39 134.0 0.8 1.6 2 0 0 2 2 2 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|529078146|ref|YP_008377149.1| - 8.4e-33 114.1 0.1 1e-32 113.8 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|529078146|ref|YP_008377149.1| - 3.7e-15 56.0 0.7 6.9e-15 55.1 0.3 1.5 1 1 0 2 2 2 1 KR domain Epimerase PF01370.16 gi|529078146|ref|YP_008377149.1| - 3.8e-06 26.5 0.3 6e-06 25.8 0.2 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Saccharop_dh PF03435.13 gi|529078146|ref|YP_008377149.1| - 0.0037 16.3 0.6 0.0056 15.7 0.4 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase Ribosomal_L12 PF00542.14 gi|529078146|ref|YP_008377149.1| - 0.12 12.4 0.1 0.27 11.2 0.1 1.6 1 0 0 1 1 1 0 Ribosomal protein L7/L12 C-terminal domain 3Beta_HSD PF01073.14 gi|529078146|ref|YP_008377149.1| - 0.12 11.0 1.2 0.15 10.6 0.8 1.3 1 1 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|529078146|ref|YP_008377149.1| - 0.25 11.3 3.7 0.35 10.8 2.5 1.3 1 1 0 1 1 1 0 NADH(P)-binding Peptidase_M22 PF00814.20 gi|529078147|ref|YP_008377150.1| - 1.4e-76 257.5 0.0 1.9e-76 257.0 0.0 1.1 1 0 0 1 1 1 1 Glycoprotease family Kdo PF06293.9 gi|529078147|ref|YP_008377150.1| - 0.0024 16.9 0.1 0.0059 15.6 0.1 1.6 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family RIO1 PF01163.17 gi|529078147|ref|YP_008377150.1| - 0.0082 15.5 0.0 0.023 14.0 0.0 1.6 1 1 0 1 1 1 1 RIO1 family Pkinase PF00069.20 gi|529078147|ref|YP_008377150.1| - 0.045 12.8 0.0 0.071 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein kinase domain YycC PF14174.1 gi|529078147|ref|YP_008377150.1| - 0.083 12.5 0.1 0.22 11.2 0.0 1.7 2 0 0 2 2 2 0 YycC-like protein Pkinase_Tyr PF07714.12 gi|529078147|ref|YP_008377150.1| - 0.24 10.4 0.0 0.35 9.9 0.0 1.2 1 0 0 1 1 1 0 Protein tyrosine kinase DEAD PF00270.24 gi|529078148|ref|YP_008377151.1| - 5.3e-19 68.3 0.0 1e-18 67.4 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|529078148|ref|YP_008377151.1| - 9.9e-11 41.3 0.0 2.9e-10 39.8 0.0 1.9 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|529078148|ref|YP_008377151.1| - 1.7e-05 24.7 0.0 4.5e-05 23.3 0.0 1.7 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Peptidase_M48 PF01435.13 gi|529078149|ref|YP_008377152.1| - 4.8e-25 88.4 0.0 7.3e-25 87.8 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|529078149|ref|YP_008377152.1| - 0.00011 21.2 5.2 0.0017 17.3 0.0 3.1 2 1 0 3 3 3 2 BlaR1 peptidase M56 DUF2201_N PF13203.1 gi|529078149|ref|YP_008377152.1| - 0.014 14.5 0.7 0.03 13.4 0.0 1.8 2 0 0 2 2 2 0 Putative metallopeptidase domain SprT-like PF10263.4 gi|529078149|ref|YP_008377152.1| - 0.023 14.3 0.0 0.034 13.8 0.0 1.2 1 0 0 1 1 1 0 SprT-like family Peptidase_MA_2 PF13485.1 gi|529078149|ref|YP_008377152.1| - 0.047 13.7 0.3 0.13 12.2 0.0 1.9 2 0 0 2 2 2 0 Peptidase MA superfamily DUF4129 PF13559.1 gi|529078150|ref|YP_008377153.1| - 1.2e-08 34.8 5.4 3.7e-08 33.2 3.7 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) CarboxypepD_reg PF13620.1 gi|529078150|ref|YP_008377153.1| - 0.0035 17.3 10.6 0.34 10.9 0.5 3.5 3 0 0 3 3 3 2 Carboxypeptidase regulatory-like domain DUF4198 PF10670.4 gi|529078150|ref|YP_008377153.1| - 0.16 11.9 2.6 4.7 7.1 0.0 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4198) DUF4480 PF13715.1 gi|529078150|ref|YP_008377153.1| - 0.21 11.6 1.2 12 6.0 0.0 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4480) DUF58 PF01882.13 gi|529078152|ref|YP_008377155.1| - 7.7e-18 64.4 2.1 1.2e-17 63.8 0.9 1.8 2 0 0 2 2 2 1 Protein of unknown function DUF58 PBP_like PF12727.2 gi|529078152|ref|YP_008377155.1| - 0.012 14.6 0.0 0.024 13.6 0.0 1.4 1 0 0 1 1 1 0 PBP superfamily domain DUF11 PF01345.13 gi|529078152|ref|YP_008377155.1| - 0.032 14.2 2.2 0.075 13.0 1.5 1.7 1 0 0 1 1 1 0 Domain of unknown function DUF11 AAA_3 PF07726.6 gi|529078154|ref|YP_008377157.1| - 7e-65 216.5 0.1 1.2e-64 215.8 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|529078154|ref|YP_008377157.1| - 8.8e-17 61.1 0.0 2.5e-16 59.6 0.0 1.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|529078154|ref|YP_008377157.1| - 4.7e-07 30.0 0.0 6.7e-06 26.3 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|529078154|ref|YP_008377157.1| - 2.3e-05 23.9 0.0 0.012 15.1 0.0 2.1 2 0 0 2 2 2 2 Sigma-54 interaction domain MCM PF00493.18 gi|529078154|ref|YP_008377157.1| - 0.00027 19.8 0.0 0.0075 15.1 0.0 2.1 2 0 0 2 2 2 1 MCM2/3/5 family RuvB_N PF05496.7 gi|529078154|ref|YP_008377157.1| - 0.013 14.5 0.0 0.24 10.4 0.0 2.5 1 1 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus Mg_chelatase PF01078.16 gi|529078154|ref|YP_008377157.1| - 0.028 13.5 0.1 1.4 8.0 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_22 PF13401.1 gi|529078154|ref|YP_008377157.1| - 0.053 13.6 0.0 0.75 9.9 0.0 2.4 2 1 0 2 2 2 0 AAA domain TrkA_C PF02080.16 gi|529078155|ref|YP_008377158.1| - 3.1e-23 81.1 6.6 1.1e-15 57.0 0.4 2.6 2 0 0 2 2 2 2 TrkA-C domain CitMHS PF03600.11 gi|529078155|ref|YP_008377158.1| - 5.8e-23 81.0 34.0 7e-14 51.1 2.6 2.0 2 0 0 2 2 2 2 Citrate transporter Na_sulph_symp PF00939.14 gi|529078155|ref|YP_008377158.1| - 1.4e-19 70.3 36.7 1.7e-13 50.3 10.5 3.3 2 1 1 3 3 3 3 Sodium:sulfate symporter transmembrane region DUF4342 PF14242.1 gi|529078155|ref|YP_008377158.1| - 0.0097 15.6 0.3 0.0097 15.6 0.2 4.6 3 1 1 4 4 4 2 Domain of unknown function (DUF4342) 5_nucleotid_C PF02872.13 gi|529078156|ref|YP_008377159.1| - 1.4e-33 116.0 1.7 9.5e-33 113.3 0.3 2.5 2 0 0 2 2 2 1 5'-nucleotidase, C-terminal domain Metallophos PF00149.23 gi|529078156|ref|YP_008377159.1| - 6.5e-07 28.9 0.0 1.5e-06 27.7 0.0 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase EF-hand_7 PF13499.1 gi|529078156|ref|YP_008377159.1| - 0.088 12.9 0.8 0.33 11.1 0.6 2.0 1 1 0 1 1 1 0 EF-hand domain pair Dockerin_1 PF00404.13 gi|529078156|ref|YP_008377159.1| - 0.59 9.9 15.3 1 9.1 2.3 3.1 2 0 0 2 2 2 0 Dockerin type I repeat RskA PF10099.4 gi|529078156|ref|YP_008377159.1| - 0.7 9.6 8.4 0.13 12.0 2.5 2.0 2 0 0 2 2 2 0 Anti-sigma-K factor rskA BofA PF07441.6 gi|529078157|ref|YP_008377160.1| - 0.0014 18.6 18.4 0.002 18.0 12.8 1.2 1 0 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA DUF3149 PF11346.3 gi|529078157|ref|YP_008377160.1| - 0.2 11.2 2.0 0.7 9.4 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3149) TraP PF07296.6 gi|529078157|ref|YP_008377160.1| - 3 6.7 6.3 3.9 6.3 4.4 1.2 1 0 0 1 1 1 0 TraP protein ABC2_membrane PF01061.19 gi|529078157|ref|YP_008377160.1| - 7.8 5.6 10.7 8.4 5.4 7.4 1.1 1 0 0 1 1 1 0 ABC-2 type transporter PIN PF01850.16 gi|529078160|ref|YP_008377163.1| - 1.7e-14 54.1 0.0 2.3e-14 53.7 0.0 1.1 1 0 0 1 1 1 1 PIN domain DUF217 PF02697.9 gi|529078162|ref|YP_008377165.1| - 0.00015 21.9 0.0 0.0002 21.5 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 DUF883 PF05957.8 gi|529078162|ref|YP_008377165.1| - 0.18 12.2 1.6 0.29 11.5 0.4 1.7 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) PIN PF01850.16 gi|529078163|ref|YP_008377166.1| - 1.8e-11 44.4 0.1 2e-11 44.2 0.0 1.0 1 0 0 1 1 1 1 PIN domain PHP PF02811.14 gi|529078164|ref|YP_008377167.1| - 1.3e-10 41.3 0.0 1.6e-10 41.0 0.0 1.2 1 0 0 1 1 1 1 PHP domain PHP_C PF13263.1 gi|529078164|ref|YP_008377167.1| - 0.049 13.1 0.1 0.12 11.8 0.0 1.6 1 0 0 1 1 1 0 PHP-associated Abhydrolase_6 PF12697.2 gi|529078166|ref|YP_008377169.1| - 7.3e-32 111.0 11.5 8.5e-32 110.8 8.0 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|529078166|ref|YP_008377169.1| - 1.4e-21 77.1 0.2 1.4e-11 44.3 0.5 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|529078166|ref|YP_008377169.1| - 6.7e-16 58.3 0.9 2.9e-15 56.2 0.6 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|529078166|ref|YP_008377169.1| - 0.00037 19.8 0.1 0.2 10.8 0.0 2.4 2 1 0 2 2 2 2 Dienelactone hydrolase family Abhydrolase_4 PF08386.5 gi|529078166|ref|YP_008377169.1| - 0.004 17.0 0.0 0.0065 16.3 0.0 1.4 1 0 0 1 1 1 1 TAP-like protein UPF0227 PF05728.7 gi|529078166|ref|YP_008377169.1| - 0.0095 15.6 0.0 0.018 14.7 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0227) FSH1 PF03959.8 gi|529078166|ref|YP_008377169.1| - 0.02 14.3 0.0 0.03 13.7 0.0 1.2 1 0 0 1 1 1 0 Serine hydrolase (FSH1) Peptidase_S9 PF00326.16 gi|529078166|ref|YP_008377169.1| - 0.05 12.8 0.0 0.088 12.0 0.0 1.4 1 0 0 1 1 1 0 Prolyl oligopeptidase family DUF2048 PF09752.4 gi|529078166|ref|YP_008377169.1| - 0.12 11.1 0.0 0.18 10.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2048) DICT PF10069.4 gi|529078167|ref|YP_008377170.1| - 9.7e-20 70.4 0.0 1.6e-19 69.7 0.0 1.3 1 0 0 1 1 1 1 Sensory domain found in DIguanylate Cyclases & Two-component systems tRNA-synt_2c PF01411.14 gi|529078168|ref|YP_008377171.1| - 9.6e-119 397.1 0.0 1.2e-118 396.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|529078168|ref|YP_008377171.1| - 1.3e-12 47.3 1.3 2.5e-12 46.4 0.9 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.14 gi|529078168|ref|YP_008377171.1| - 7.5e-08 31.9 3.9 2.3e-07 30.4 2.7 1.8 1 0 0 1 1 1 1 DHHA1 domain Sensor PF13796.1 gi|529078169|ref|YP_008377172.1| - 8e-38 129.8 32.6 9.1e-38 129.6 22.6 1.0 1 0 0 1 1 1 1 Putative sensor Rep_fac_C PF08542.6 gi|529078170|ref|YP_008377173.1| - 9.4e-21 73.6 0.0 2.2e-20 72.4 0.0 1.7 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.24 gi|529078170|ref|YP_008377173.1| - 2.3e-15 56.9 0.0 7.9e-10 39.0 0.0 2.9 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|529078170|ref|YP_008377173.1| - 1.5e-11 44.2 0.0 6.3e-07 29.2 0.0 2.6 2 1 0 2 2 2 2 DNA polymerase III, delta subunit Rad17 PF03215.10 gi|529078170|ref|YP_008377173.1| - 1.3e-08 33.9 0.0 1.5e-06 27.1 0.0 2.2 2 0 0 2 2 2 1 Rad17 cell cycle checkpoint protein RuvB_N PF05496.7 gi|529078170|ref|YP_008377173.1| - 6.4e-07 28.6 0.0 1.2e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_14 PF13173.1 gi|529078170|ref|YP_008377173.1| - 9.8e-05 22.2 0.0 0.0013 18.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|529078170|ref|YP_008377173.1| - 0.00075 19.6 0.0 0.011 15.9 0.0 2.6 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|529078170|ref|YP_008377173.1| - 0.0014 18.6 0.4 0.013 15.4 0.0 2.5 2 1 0 2 2 2 1 AAA ATPase domain AAA_18 PF13238.1 gi|529078170|ref|YP_008377173.1| - 0.0015 18.7 0.2 0.01 16.1 0.0 2.5 2 1 0 2 2 2 1 AAA domain Intein_splicing PF14890.1 gi|529078170|ref|YP_008377173.1| - 0.0018 17.2 0.0 0.0055 15.6 0.0 1.7 2 0 0 2 2 2 1 Intein splicing domain AAA_17 PF13207.1 gi|529078170|ref|YP_008377173.1| - 0.0018 19.0 4.5 0.0025 18.6 0.1 3.5 3 1 1 4 4 3 1 AAA domain AAA_19 PF13245.1 gi|529078170|ref|YP_008377173.1| - 0.012 15.2 0.0 0.032 13.9 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain IstB_IS21 PF01695.12 gi|529078170|ref|YP_008377173.1| - 0.014 14.7 0.0 0.029 13.8 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_25 PF13481.1 gi|529078170|ref|YP_008377173.1| - 0.024 14.0 0.1 0.11 11.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|529078170|ref|YP_008377173.1| - 0.031 13.8 0.0 0.066 12.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain NB-ARC PF00931.17 gi|529078170|ref|YP_008377173.1| - 0.043 12.6 0.0 0.08 11.7 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain RNA_helicase PF00910.17 gi|529078170|ref|YP_008377173.1| - 0.049 13.7 0.0 0.17 12.0 0.0 1.9 2 0 0 2 2 1 0 RNA helicase TIP49 PF06068.8 gi|529078170|ref|YP_008377173.1| - 0.052 12.2 0.0 0.16 10.6 0.0 1.7 2 0 0 2 2 2 0 TIP49 C-terminus Phage_endo_I PF05367.6 gi|529078170|ref|YP_008377173.1| - 0.053 12.9 0.0 4.7 6.5 0.0 2.4 2 0 0 2 2 2 0 Phage endonuclease I AAA_2 PF07724.9 gi|529078170|ref|YP_008377173.1| - 0.061 13.2 0.0 0.15 11.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) HMG_box PF00505.14 gi|529078170|ref|YP_008377173.1| - 0.07 13.4 0.5 0.19 11.9 0.3 1.7 1 0 0 1 1 1 0 HMG (high mobility group) box Viral_helicase1 PF01443.13 gi|529078170|ref|YP_008377173.1| - 0.082 12.4 0.0 0.16 11.4 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase DNA_pol3_delta PF06144.8 gi|529078170|ref|YP_008377173.1| - 0.11 12.0 0.0 0.22 11.0 0.0 1.5 1 0 0 1 1 1 0 DNA polymerase III, delta subunit HMG_box_2 PF09011.5 gi|529078170|ref|YP_008377173.1| - 0.17 12.2 1.7 0.39 11.1 1.2 1.5 1 0 0 1 1 1 0 HMG-box domain Lambda_tail_I PF06805.7 gi|529078171|ref|YP_008377174.1| - 0.057 13.2 0.4 0.087 12.6 0.2 1.5 1 1 0 1 1 1 0 Bacteriophage lambda tail assembly protein I Acetyltransf_10 PF13673.1 gi|529078172|ref|YP_008377175.1| - 3.8e-08 33.4 0.0 4.6e-08 33.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|529078172|ref|YP_008377175.1| - 2.9e-06 27.3 0.0 4.1e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|529078172|ref|YP_008377175.1| - 7.3e-05 22.7 0.1 0.00014 21.8 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.1 gi|529078172|ref|YP_008377175.1| - 0.05 13.4 0.0 1.2 9.0 0.0 2.1 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain DDE_Tnp_IS66 PF03050.9 gi|529078173|ref|YP_008377176.1| - 1e-52 179.0 0.0 1e-52 179.0 0.0 1.6 2 0 0 2 2 2 1 Transposase IS66 family GAS PF13851.1 gi|529078173|ref|YP_008377176.1| - 0.0051 16.0 3.9 0.009 15.2 2.7 1.3 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding Transposase_mut PF00872.13 gi|529078173|ref|YP_008377176.1| - 0.006 15.1 0.0 0.012 14.2 0.0 1.4 1 0 0 1 1 1 1 Transposase, Mutator family TMF_TATA_bd PF12325.3 gi|529078173|ref|YP_008377176.1| - 0.0062 16.2 9.2 0.016 14.9 6.4 1.6 1 0 0 1 1 1 1 TATA element modulatory factor 1 TATA binding bZIP_1 PF00170.16 gi|529078173|ref|YP_008377176.1| - 0.0072 16.2 4.8 0.018 15.0 3.3 1.7 1 0 0 1 1 1 1 bZIP transcription factor CENP-F_leu_zip PF10473.4 gi|529078173|ref|YP_008377176.1| - 0.017 14.9 7.3 0.047 13.5 5.0 1.7 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Shugoshin_N PF07558.6 gi|529078173|ref|YP_008377176.1| - 0.021 14.5 1.3 0.048 13.3 0.9 1.6 1 0 0 1 1 1 0 Shugoshin N-terminal coiled-coil region DASH_Spc34 PF08657.5 gi|529078173|ref|YP_008377176.1| - 0.027 14.1 3.6 0.056 13.0 2.5 1.4 1 0 0 1 1 1 0 DASH complex subunit Spc34 IncA PF04156.9 gi|529078173|ref|YP_008377176.1| - 0.038 13.5 3.7 0.087 12.4 2.6 1.5 1 0 0 1 1 1 0 IncA protein SOUL PF04832.7 gi|529078173|ref|YP_008377176.1| - 0.055 13.0 0.2 0.1 12.1 0.1 1.4 1 0 0 1 1 1 0 SOUL heme-binding protein TBPIP PF07106.8 gi|529078173|ref|YP_008377176.1| - 0.059 12.9 1.9 0.14 11.6 1.3 1.6 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) CBF_beta PF02312.12 gi|529078173|ref|YP_008377176.1| - 0.073 12.6 2.5 0.13 11.8 1.7 1.3 1 0 0 1 1 1 0 Core binding factor beta subunit DUF869 PF05911.6 gi|529078173|ref|YP_008377176.1| - 0.079 11.1 2.8 0.11 10.7 1.9 1.1 1 0 0 1 1 1 0 Plant protein of unknown function (DUF869) MCC-bdg_PDZ PF10506.4 gi|529078173|ref|YP_008377176.1| - 0.081 12.7 3.9 0.19 11.5 2.7 1.7 1 0 0 1 1 1 0 PDZ domain of MCC-2 bdg protein for Usher syndrome DUF2681 PF10883.3 gi|529078173|ref|YP_008377176.1| - 0.11 12.7 1.3 0.34 11.1 0.9 1.8 2 0 0 2 2 1 0 Protein of unknown function (DUF2681) DUF972 PF06156.8 gi|529078173|ref|YP_008377176.1| - 0.12 12.7 3.8 0.11 12.8 1.4 1.7 2 0 0 2 2 1 0 Protein of unknown function (DUF972) DUF3584 PF12128.3 gi|529078173|ref|YP_008377176.1| - 0.17 9.1 3.3 0.24 8.6 2.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) CtIP_N PF10482.4 gi|529078173|ref|YP_008377176.1| - 0.24 11.2 8.5 0.17 11.6 4.2 2.0 2 0 0 2 2 2 0 Tumour-suppressor protein CtIP N-terminal domain V_ATPase_I PF01496.14 gi|529078173|ref|YP_008377176.1| - 0.34 8.6 2.5 0.48 8.2 1.8 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family UPF0547 PF10571.4 gi|529078173|ref|YP_008377176.1| - 0.36 10.5 2.8 0.57 9.9 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Daxx PF03344.10 gi|529078173|ref|YP_008377176.1| - 0.37 9.2 7.2 0.57 8.6 5.0 1.1 1 0 0 1 1 1 0 Daxx Family TMF_DNA_bd PF12329.3 gi|529078173|ref|YP_008377176.1| - 0.53 10.1 8.2 0.24 11.2 2.0 2.2 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding DivIC PF04977.10 gi|529078173|ref|YP_008377176.1| - 0.58 9.6 7.7 0.15 11.5 2.4 2.2 2 0 0 2 2 2 0 Septum formation initiator DDE_Tnp_IS240 PF13610.1 gi|529078173|ref|YP_008377176.1| - 0.59 10.0 2.8 0.44 10.4 0.1 2.2 2 1 0 2 2 2 0 DDE domain APG6 PF04111.7 gi|529078173|ref|YP_008377176.1| - 1.4 7.9 4.5 2.3 7.1 3.1 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 zf-IS66 PF13005.2 gi|529078173|ref|YP_008377176.1| - 4.8 7.2 13.2 0.093 12.7 3.8 2.2 2 0 0 2 2 1 0 zinc-finger binding domain of transposase IS66 bZIP_2 PF07716.10 gi|529078173|ref|YP_008377176.1| - 5.4 6.9 12.9 0.33 10.8 4.6 2.3 2 1 1 3 3 2 0 Basic region leucine zipper DUF457 PF04307.9 gi|529078174|ref|YP_008377177.1| - 5.5e-17 61.5 5.6 7.8e-17 61.0 3.9 1.2 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF3040 PF11239.3 gi|529078174|ref|YP_008377177.1| - 0.28 11.2 5.0 0.39 10.7 1.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) DUF202 PF02656.10 gi|529078174|ref|YP_008377177.1| - 0.5 10.6 3.5 1.5 9.0 0.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF202) DUF4282 PF14110.1 gi|529078174|ref|YP_008377177.1| - 3.7 7.8 9.1 0.74 10.0 3.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4282) ADP_ribosyl_GH PF03747.9 gi|529078175|ref|YP_008377178.1| - 1e-74 251.9 3.3 1.2e-74 251.7 2.3 1.0 1 0 0 1 1 1 1 ADP-ribosylglycohydrolase Gly-zipper_Omp PF13488.1 gi|529078175|ref|YP_008377178.1| - 0.011 15.3 3.2 0.14 11.8 0.9 2.5 2 0 0 2 2 2 0 Glycine zipper Rick_17kDa_Anti PF05433.10 gi|529078175|ref|YP_008377178.1| - 0.015 14.9 3.1 0.015 14.9 2.2 2.8 3 0 0 3 3 3 0 Glycine zipper 2TM domain Gly-zipper_YMGG PF13441.1 gi|529078175|ref|YP_008377178.1| - 0.12 11.9 8.0 0.33 10.5 2.5 2.5 2 0 0 2 2 2 0 YMGG-like Gly-zipper Gly-zipper_OmpA PF13436.1 gi|529078175|ref|YP_008377178.1| - 0.13 11.9 5.7 0.45 10.1 0.7 2.4 2 0 0 2 2 2 0 Glycine-zipper containing OmpA-like membrane domain TPR_1 PF00515.23 gi|529078177|ref|YP_008377180.1| - 1.4e-05 24.4 0.1 0.0027 17.2 0.0 3.5 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_11 PF13414.1 gi|529078177|ref|YP_008377180.1| - 6.4e-05 22.5 0.0 0.002 17.7 0.0 2.7 1 1 1 2 2 2 1 TPR repeat TPR_2 PF07719.12 gi|529078177|ref|YP_008377180.1| - 0.00054 19.6 0.3 0.37 10.8 0.0 3.9 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_12 PF13424.1 gi|529078177|ref|YP_008377180.1| - 0.055 13.4 0.2 0.32 10.9 0.0 2.4 2 1 0 2 2 2 0 Tetratricopeptide repeat G2F PF07474.7 gi|529078179|ref|YP_008377182.1| - 0.16 11.3 1.2 0.46 9.8 0.8 1.7 1 1 1 2 2 2 0 G2F domain DZR PF12773.2 gi|529078179|ref|YP_008377182.1| - 0.16 11.7 0.2 0.16 11.7 0.1 1.9 2 0 0 2 2 2 0 Double zinc ribbon Siva PF05458.7 gi|529078179|ref|YP_008377182.1| - 0.27 10.7 2.5 0.43 10.1 1.7 1.3 1 0 0 1 1 1 0 Cd27 binding protein (Siva) Zn_Tnp_IS1595 PF12760.2 gi|529078179|ref|YP_008377182.1| - 0.59 9.9 0.1 0.59 9.9 0.1 2.7 1 1 2 3 3 3 0 Transposase zinc-ribbon domain DUF3900 PF13039.1 gi|529078181|ref|YP_008377184.1| - 0.00082 18.9 0.1 0.0012 18.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3900) Pex24p PF06398.6 gi|529078182|ref|YP_008377185.1| - 0.0024 16.7 0.0 0.0037 16.1 0.0 1.3 1 0 0 1 1 1 1 Integral peroxisomal membrane peroxin ABC_membrane_2 PF06472.10 gi|529078182|ref|YP_008377185.1| - 0.0079 15.3 0.2 0.014 14.4 0.1 1.3 1 0 0 1 1 1 1 ABC transporter transmembrane region 2 Daxx PF03344.10 gi|529078182|ref|YP_008377185.1| - 0.093 11.1 0.4 0.14 10.6 0.3 1.1 1 0 0 1 1 1 0 Daxx Family SRR PF07709.6 gi|529078182|ref|YP_008377185.1| - 0.1 12.8 1.0 4 8.0 0.2 3.1 1 1 1 2 2 2 0 Seven Residue Repeat DUF1212 PF06738.7 gi|529078182|ref|YP_008377185.1| - 0.12 11.8 2.4 1.6 8.1 0.0 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF1212) NPV_P10 PF05531.7 gi|529078182|ref|YP_008377185.1| - 0.12 12.6 0.2 0.43 10.8 0.1 2.0 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein Baculo_PEP_C PF04513.7 gi|529078182|ref|YP_008377185.1| - 0.13 12.0 2.0 0.21 11.4 0.6 1.8 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus BLOC1_2 PF10046.4 gi|529078182|ref|YP_008377185.1| - 0.26 11.4 1.1 0.6 10.2 0.1 2.1 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Prefoldin PF02996.12 gi|529078182|ref|YP_008377185.1| - 1.3 8.6 5.4 14 5.3 0.0 3.6 4 0 0 4 4 4 0 Prefoldin subunit IncA PF04156.9 gi|529078182|ref|YP_008377185.1| - 2.8 7.5 4.2 4 6.9 0.1 2.7 3 0 0 3 3 3 0 IncA protein AA_permease_C PF13906.1 gi|529078182|ref|YP_008377185.1| - 8.7 6.3 10.7 3 7.7 0.9 2.7 2 0 0 2 2 2 0 C-terminus of AA_permease NDK PF00334.14 gi|529078183|ref|YP_008377186.1| - 0.00099 18.9 0.0 0.001 18.8 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase SNF2_N PF00176.18 gi|529078184|ref|YP_008377187.1| - 5.3e-19 68.1 0.0 1.1e-18 67.1 0.0 1.4 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 gi|529078184|ref|YP_008377187.1| - 1.1e-15 57.2 0.0 3.2e-15 55.7 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|529078184|ref|YP_008377187.1| - 7.6e-07 29.1 0.0 2.3e-06 27.5 0.0 1.8 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit PLDc_2 PF13091.1 gi|529078184|ref|YP_008377187.1| - 8.2e-05 22.3 0.0 0.0002 21.1 0.0 1.6 1 0 0 1 1 1 1 PLD-like domain Helicase_C_4 PF13871.1 gi|529078184|ref|YP_008377187.1| - 0.00082 18.8 1.1 0.0037 16.7 0.0 2.4 3 0 0 3 3 3 1 Helicase_C-like FlgN PF05130.7 gi|529078184|ref|YP_008377187.1| - 0.0065 16.7 3.9 0.021 15.0 0.7 2.9 2 1 0 2 2 2 1 FlgN protein DEAD PF00270.24 gi|529078184|ref|YP_008377187.1| - 0.0081 15.6 0.0 0.12 11.8 0.0 2.6 1 1 0 1 1 1 1 DEAD/DEAH box helicase CMD PF02627.15 gi|529078184|ref|YP_008377187.1| - 0.074 12.8 0.1 0.18 11.6 0.1 1.7 1 0 0 1 1 1 0 Carboxymuconolactone decarboxylase family DUF1664 PF07889.7 gi|529078184|ref|YP_008377187.1| - 0.086 12.6 1.1 0.83 9.4 0.1 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF1664) AAA_13 PF13166.1 gi|529078184|ref|YP_008377187.1| - 0.09 11.2 0.1 0.24 9.8 0.1 1.7 1 0 0 1 1 1 0 AAA domain Osmo_CC PF08946.5 gi|529078184|ref|YP_008377187.1| - 0.11 12.5 2.4 25 4.9 0.1 4.2 4 0 0 4 4 3 0 Osmosensory transporter coiled coil Mod_r PF07200.8 gi|529078184|ref|YP_008377187.1| - 0.42 10.5 5.2 0.13 12.1 0.2 2.7 3 0 0 3 3 3 0 Modifier of rudimentary (Mod(r)) protein CENP-Q PF13094.1 gi|529078184|ref|YP_008377187.1| - 2.1 8.3 8.8 0.18 11.8 2.2 2.1 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit DivIC PF04977.10 gi|529078184|ref|YP_008377187.1| - 4.8 6.7 6.9 1 8.8 0.1 3.2 3 0 0 3 3 3 0 Septum formation initiator FUSC PF04632.7 gi|529078184|ref|YP_008377187.1| - 5.4 5.3 4.8 14 3.9 3.3 1.7 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF883 PF05957.8 gi|529078184|ref|YP_008377187.1| - 7.9 6.9 14.4 0.84 10.0 0.5 4.2 4 1 0 4 4 4 0 Bacterial protein of unknown function (DUF883) DUF1156 PF06634.7 gi|529078185|ref|YP_008377188.1| - 5.8e-09 35.5 0.0 1.3e-08 34.4 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1156) Methyltransf_26 PF13659.1 gi|529078185|ref|YP_008377188.1| - 4.8e-08 33.0 0.0 5.2e-07 29.7 0.0 2.4 1 1 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|529078185|ref|YP_008377188.1| - 5.2e-05 22.8 0.0 0.00011 21.7 0.0 1.6 1 0 0 1 1 1 1 DNA methylase Phage_P2_GpE PF06528.7 gi|529078186|ref|YP_008377189.1| - 0.081 12.3 0.0 0.23 10.9 0.0 1.8 1 0 0 1 1 1 0 Phage P2 GpE DUF499 PF04465.7 gi|529078187|ref|YP_008377190.1| - 1.5e-31 108.8 0.0 1.5e-26 92.3 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF499) TraS PF10624.4 gi|529078188|ref|YP_008377191.1| - 0.083 12.4 0.1 0.093 12.2 0.1 1.0 1 0 0 1 1 1 0 Plasmid conjugative transfer entry exclusion protein TraS AAA_21 PF13304.1 gi|529078190|ref|YP_008377193.1| - 3.9e-12 46.7 12.1 1.8e-05 24.8 0.1 4.5 3 1 0 3 3 3 2 AAA domain SMC_N PF02463.14 gi|529078190|ref|YP_008377193.1| - 7.6e-11 41.6 0.0 0.00031 20.0 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain ABC_tran PF00005.22 gi|529078190|ref|YP_008377193.1| - 1.1e-06 29.0 0.7 0.051 13.8 0.2 3.7 2 2 0 2 2 2 2 ABC transporter AAA_15 PF13175.1 gi|529078190|ref|YP_008377193.1| - 4.4e-06 26.0 0.0 0.023 13.7 0.0 2.3 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|529078190|ref|YP_008377193.1| - 9e-06 25.1 0.0 2e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|529078190|ref|YP_008377193.1| - 9.4e-06 26.0 17.0 9.4e-06 26.0 11.8 4.3 3 1 0 3 3 3 1 AAA domain AAA_13 PF13166.1 gi|529078190|ref|YP_008377193.1| - 0.0018 16.8 17.1 0.012 14.1 0.0 4.3 3 2 2 5 5 5 3 AAA domain SbcCD_C PF13558.1 gi|529078190|ref|YP_008377193.1| - 0.0023 17.7 0.0 0.0057 16.5 0.0 1.7 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.1 gi|529078190|ref|YP_008377193.1| - 0.015 15.4 0.0 1.7 8.8 0.0 3.3 2 0 0 2 2 2 0 AAA domain UPF0079 PF02367.12 gi|529078190|ref|YP_008377193.1| - 0.023 14.3 0.0 0.17 11.4 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 NPV_P10 PF05531.7 gi|529078190|ref|YP_008377193.1| - 0.16 12.2 10.7 2.2 8.5 0.1 5.0 3 1 1 4 4 4 0 Nucleopolyhedrovirus P10 protein GED PF02212.13 gi|529078190|ref|YP_008377193.1| - 0.47 10.3 5.8 1 9.2 0.5 3.6 3 0 0 3 3 3 0 Dynamin GTPase effector domain IncA PF04156.9 gi|529078190|ref|YP_008377193.1| - 5.3 6.5 34.6 2 7.9 3.5 5.1 3 2 1 5 5 5 0 IncA protein DUF1045 PF06299.7 gi|529078192|ref|YP_008377195.1| - 0.13 11.9 0.3 0.35 10.5 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1045) Rsa3 PF14615.1 gi|529078192|ref|YP_008377195.1| - 0.24 10.7 1.2 0.31 10.3 0.1 1.7 2 0 0 2 2 2 0 Ribosome-assembly protein 3 PDDEXK_1 PF12705.2 gi|529078193|ref|YP_008377196.1| - 1.3e-35 123.0 0.0 1.2e-34 119.8 0.0 2.2 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily Exonuc_V_gamma PF04257.9 gi|529078193|ref|YP_008377196.1| - 3.5e-09 35.2 0.0 2.8e-05 22.3 0.0 2.2 2 0 0 2 2 2 2 Exodeoxyribonuclease V, gamma subunit UvrD-helicase PF00580.16 gi|529078194|ref|YP_008377197.1| - 1.6e-60 205.0 0.0 4.4e-60 203.6 0.0 1.7 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|529078194|ref|YP_008377197.1| - 8.3e-40 137.3 0.0 1.4e-39 136.5 0.0 1.5 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain PDDEXK_1 PF12705.2 gi|529078194|ref|YP_008377197.1| - 2.5e-14 53.2 0.1 1.3e-13 50.9 0.0 2.3 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily AAA_19 PF13245.1 gi|529078194|ref|YP_008377197.1| - 1.4e-10 40.7 0.1 1.4e-10 40.7 0.1 2.5 3 0 0 3 3 3 1 Part of AAA domain UvrD_C_2 PF13538.1 gi|529078194|ref|YP_008377197.1| - 2.1e-10 40.6 1.1 1.9e-05 24.7 0.0 3.1 3 0 0 3 3 3 2 UvrD-like helicase C-terminal domain AAA_30 PF13604.1 gi|529078194|ref|YP_008377197.1| - 4.3e-07 29.7 1.1 0.00012 21.6 0.1 2.8 2 0 0 2 2 2 2 AAA domain Viral_helicase1 PF01443.13 gi|529078194|ref|YP_008377197.1| - 0.00011 21.7 0.3 12 5.3 0.0 4.3 4 0 0 4 4 4 1 Viral (Superfamily 1) RNA helicase AAA_11 PF13086.1 gi|529078194|ref|YP_008377197.1| - 0.0049 16.4 0.1 2.3 7.7 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|529078194|ref|YP_008377197.1| - 0.0053 16.9 0.0 5.3 7.2 0.0 3.2 3 0 0 3 3 3 1 AAA domain DUF3945 PF13101.1 gi|529078194|ref|YP_008377197.1| - 0.1 11.8 0.3 7.5 5.9 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3945) DUF2800 PF10926.3 gi|529078194|ref|YP_008377197.1| - 0.13 11.3 0.0 0.35 9.9 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2800) TrmB PF01978.14 gi|529078195|ref|YP_008377198.1| - 1.3e-05 24.7 0.1 2.5e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|529078195|ref|YP_008377198.1| - 1.9e-05 24.9 0.1 4.3e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|529078195|ref|YP_008377198.1| - 0.00013 21.5 0.0 0.00029 20.4 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|529078195|ref|YP_008377198.1| - 0.00034 20.3 0.5 0.00097 18.8 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|529078195|ref|YP_008377198.1| - 0.0052 16.8 0.0 0.0087 16.1 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_IclR PF09339.5 gi|529078195|ref|YP_008377198.1| - 0.0066 16.0 1.5 0.0084 15.6 0.2 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_36 PF13730.1 gi|529078195|ref|YP_008377198.1| - 0.0073 16.4 0.0 0.015 15.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|529078195|ref|YP_008377198.1| - 0.011 15.2 0.0 0.042 13.4 0.0 1.8 2 0 0 2 2 2 0 LexA DNA binding domain RP-C PF03428.8 gi|529078195|ref|YP_008377198.1| - 0.015 14.7 0.1 0.026 13.9 0.0 1.5 1 1 0 1 1 1 0 Replication protein C N-terminal domain HTH_24 PF13412.1 gi|529078195|ref|YP_008377198.1| - 0.023 14.0 0.0 0.055 12.8 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|529078195|ref|YP_008377198.1| - 0.038 13.6 0.0 0.065 12.9 0.0 1.3 1 0 0 1 1 1 0 MarR family TrmB PF01978.14 gi|529078197|ref|YP_008377200.1| - 0.0034 17.0 0.0 0.009 15.6 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Phage_HK97_TLTM PF06120.6 gi|529078197|ref|YP_008377200.1| - 0.085 12.1 0.1 0.098 11.9 0.0 1.0 1 0 0 1 1 1 0 Tail length tape measure protein PDDEXK_1 PF12705.2 gi|529078198|ref|YP_008377201.1| - 1.7e-11 44.0 0.1 2.9e-11 43.2 0.0 1.5 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.12 gi|529078198|ref|YP_008377201.1| - 2.5e-06 27.5 0.0 4.3e-06 26.7 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF83 DUF2752 PF10825.3 gi|529078198|ref|YP_008377201.1| - 0.023 14.6 0.1 0.047 13.7 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2752) Rubredoxin PF00301.15 gi|529078198|ref|YP_008377201.1| - 0.051 13.4 6.5 0.55 10.1 0.2 3.7 3 0 0 3 3 3 0 Rubredoxin zf-ribbon_3 PF13248.1 gi|529078198|ref|YP_008377201.1| - 0.12 11.6 3.8 0.076 12.2 0.8 2.1 2 0 0 2 2 2 0 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|529078198|ref|YP_008377201.1| - 0.38 10.2 4.5 4.5 6.8 0.0 3.2 3 0 0 3 3 3 0 A2L zinc ribbon domain Zn-ribbon_8 PF09723.5 gi|529078198|ref|YP_008377201.1| - 7.5 6.5 11.0 0.7 9.8 1.0 2.9 2 1 0 2 2 2 0 Zinc ribbon domain Phage_int_SAM_1 PF02899.12 gi|529078200|ref|YP_008377203.1| - 1.1e-10 41.4 6.7 2.3e-09 37.2 1.0 2.3 1 1 1 2 2 2 2 Phage integrase, N-terminal SAM-like domain Phage_integrase PF00589.17 gi|529078200|ref|YP_008377203.1| - 1.4e-07 31.3 0.0 3.4e-07 30.0 0.0 1.7 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|529078200|ref|YP_008377203.1| - 3.8e-05 23.9 0.7 7.8e-05 22.9 0.1 1.9 2 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_2 PF12834.2 gi|529078200|ref|YP_008377203.1| - 0.00046 20.5 0.0 0.0011 19.3 0.0 1.6 1 0 0 1 1 1 1 Phage integrase, N-terminal HTH_23 PF13384.1 gi|529078200|ref|YP_008377203.1| - 0.2 11.3 0.2 0.2 11.3 0.1 2.3 2 0 0 2 2 2 0 Homeodomain-like domain Phage_integrase PF00589.17 gi|529078201|ref|YP_008377204.1| - 1e-11 44.8 0.0 5.3e-11 42.4 0.0 1.9 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|529078201|ref|YP_008377204.1| - 1.4e-08 34.7 0.1 4.2e-08 33.2 0.0 1.8 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|529078201|ref|YP_008377204.1| - 0.00027 21.1 0.0 0.00057 20.1 0.0 1.5 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain HTH_20 PF12840.2 gi|529078202|ref|YP_008377205.1| - 1.9e-08 33.9 0.2 7.1e-08 32.1 0.0 1.8 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_28 PF13518.1 gi|529078202|ref|YP_008377205.1| - 0.00019 21.3 0.0 0.00039 20.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|529078202|ref|YP_008377205.1| - 0.0002 21.4 0.0 0.00059 19.9 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn helix MarR_2 PF12802.2 gi|529078202|ref|YP_008377205.1| - 0.0002 20.9 0.0 0.00044 19.8 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_15 PF12324.3 gi|529078202|ref|YP_008377205.1| - 0.00032 20.2 0.6 0.0014 18.2 0.0 2.0 1 1 1 2 2 2 1 Helix-turn-helix domain of alkylmercury lyase HTH_24 PF13412.1 gi|529078202|ref|YP_008377205.1| - 0.0019 17.5 0.8 0.0033 16.7 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|529078202|ref|YP_008377205.1| - 0.0026 17.4 0.0 0.0041 16.7 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Sigma70_r1_1 PF03979.9 gi|529078202|ref|YP_008377205.1| - 0.011 15.6 0.1 0.29 11.0 0.0 2.2 1 1 1 2 2 2 0 Sigma-70 factor, region 1.1 HTH_IclR PF09339.5 gi|529078202|ref|YP_008377205.1| - 0.03 13.9 0.0 0.056 13.0 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain Bac_DNA_binding PF00216.16 gi|529078202|ref|YP_008377205.1| - 0.032 14.2 0.2 0.096 12.7 0.0 1.7 2 0 0 2 2 2 0 Bacterial DNA-binding protein HTH_27 PF13463.1 gi|529078202|ref|YP_008377205.1| - 0.033 14.5 0.0 0.056 13.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF2250 PF10007.4 gi|529078202|ref|YP_008377205.1| - 0.053 13.4 0.0 0.087 12.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_23 PF13384.1 gi|529078202|ref|YP_008377205.1| - 0.079 12.6 0.0 0.67 9.6 0.0 2.1 2 0 0 2 2 2 0 Homeodomain-like domain HTH_1 PF00126.22 gi|529078202|ref|YP_008377205.1| - 0.092 12.5 0.0 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family MarR PF01047.17 gi|529078202|ref|YP_008377205.1| - 0.13 12.0 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 MarR family DUF4268 PF14088.1 gi|529078203|ref|YP_008377206.1| - 2.3e-09 37.0 0.0 3.7e-09 36.3 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4268) DUF4263 PF14082.1 gi|529078203|ref|YP_008377206.1| - 9.5e-05 22.3 0.0 0.00055 19.9 0.0 2.4 1 1 1 2 2 2 1 Domain of unknown function (DUF4263) DUF91 PF01939.11 gi|529078203|ref|YP_008377206.1| - 0.009 15.1 0.0 0.017 14.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF91 DUF1628 PF07790.6 gi|529078205|ref|YP_008377208.1| - 6.6e-21 74.8 0.8 1.1e-20 74.1 0.5 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) DUF1628 PF07790.6 gi|529078206|ref|YP_008377209.1| - 1.5e-23 83.3 4.9 4.5e-23 81.7 1.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) TrmB PF01978.14 gi|529078208|ref|YP_008377211.1| - 5.9e-17 61.1 0.0 1.1e-16 60.3 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.3 gi|529078208|ref|YP_008377211.1| - 0.00037 19.5 0.0 0.00063 18.7 0.0 1.4 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB Rrf2 PF02082.15 gi|529078208|ref|YP_008377211.1| - 0.016 15.3 0.0 0.029 14.4 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_IclR PF09339.5 gi|529078208|ref|YP_008377211.1| - 0.036 13.6 0.0 0.079 12.5 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain PLDc_2 PF13091.1 gi|529078208|ref|YP_008377211.1| - 0.17 11.6 0.0 0.26 11.0 0.0 1.3 1 0 0 1 1 1 0 PLD-like domain TFIIB PF00382.14 gi|529078209|ref|YP_008377212.1| - 6.1e-36 122.0 0.0 1.1e-18 66.8 0.0 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|529078209|ref|YP_008377212.1| - 2.8e-15 55.3 2.7 5e-15 54.5 1.9 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|529078209|ref|YP_008377212.1| - 0.00037 19.6 1.4 0.00062 18.8 0.9 1.3 1 0 0 1 1 1 1 zinc-ribbon domain Sigma70_r4 PF04545.11 gi|529078209|ref|YP_008377212.1| - 0.0018 17.5 0.2 0.033 13.4 0.0 2.7 2 0 0 2 2 2 1 Sigma-70, region 4 OrfB_Zn_ribbon PF07282.6 gi|529078209|ref|YP_008377212.1| - 0.0088 15.6 1.2 0.018 14.6 0.8 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_11 PF08279.7 gi|529078209|ref|YP_008377212.1| - 0.022 14.3 0.2 0.051 13.2 0.1 1.6 1 0 0 1 1 1 0 HTH domain HTH_AsnC-type PF13404.1 gi|529078209|ref|YP_008377212.1| - 0.049 13.1 0.1 0.21 11.1 0.0 2.2 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain UMPH-1 PF05822.7 gi|529078209|ref|YP_008377212.1| - 0.051 12.8 0.0 0.076 12.3 0.0 1.2 1 0 0 1 1 1 0 Pyrimidine 5'-nucleotidase (UMPH-1) DZR PF12773.2 gi|529078209|ref|YP_008377212.1| - 0.074 12.8 1.9 0.61 9.9 1.3 1.6 1 1 1 2 2 2 0 Double zinc ribbon RRN7 PF11781.3 gi|529078209|ref|YP_008377212.1| - 0.14 11.7 4.5 0.25 10.8 3.1 1.4 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-C4_Topoisom PF01396.14 gi|529078209|ref|YP_008377212.1| - 0.35 10.4 1.5 1.4 8.4 0.1 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger UPF0547 PF10571.4 gi|529078209|ref|YP_008377212.1| - 0.52 10.0 2.7 1.1 8.9 1.9 1.5 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Nudix_N_2 PF14803.1 gi|529078209|ref|YP_008377212.1| - 0.94 9.2 4.7 4.9 6.9 3.3 2.2 1 1 0 1 1 1 0 Nudix N-terminal zf-NADH-PPase PF09297.6 gi|529078209|ref|YP_008377212.1| - 2 7.9 4.9 5.4 6.6 3.4 1.7 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Prim_Zn_Ribbon PF08273.7 gi|529078209|ref|YP_008377212.1| - 3.1 7.9 6.4 15 5.7 4.4 2.2 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase Beta-Casp PF10996.3 gi|529078210|ref|YP_008377213.1| - 5.2e-20 71.6 0.0 1.1e-19 70.6 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|529078210|ref|YP_008377213.1| - 1.1e-15 57.7 3.6 1.7e-15 57.1 2.5 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|529078210|ref|YP_008377213.1| - 3.2e-12 46.0 0.0 6.4e-12 45.0 0.0 1.6 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|529078210|ref|YP_008377213.1| - 4.3e-09 36.1 0.2 7.6e-09 35.3 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Rhodanese PF00581.15 gi|529078210|ref|YP_008377213.1| - 0.055 13.8 0.0 0.14 12.4 0.0 1.7 1 0 0 1 1 1 0 Rhodanese-like domain DNA_pol_B PF00136.16 gi|529078211|ref|YP_008377214.1| - 4.6e-26 91.6 0.0 7.8e-26 90.8 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase family B DivIC PF04977.10 gi|529078212|ref|YP_008377215.1| - 0.00062 19.1 0.2 0.00095 18.6 0.2 1.2 1 0 0 1 1 1 1 Septum formation initiator HSBP1 PF06825.7 gi|529078212|ref|YP_008377215.1| - 0.0015 18.0 1.3 0.12 11.9 0.3 2.4 1 1 1 2 2 2 1 Heat shock factor binding protein 1 Dynamitin PF04912.9 gi|529078212|ref|YP_008377215.1| - 0.0031 16.3 0.3 0.004 16.0 0.2 1.1 1 0 0 1 1 1 1 Dynamitin PilJ PF13675.1 gi|529078212|ref|YP_008377215.1| - 0.0052 17.0 0.6 2.2 8.6 0.0 2.1 2 0 0 2 2 2 2 Type IV pili methyl-accepting chemotaxis transducer N-term SlyX PF04102.7 gi|529078212|ref|YP_008377215.1| - 0.0066 16.8 1.5 0.019 15.3 1.0 1.7 1 1 0 1 1 1 1 SlyX TMF_DNA_bd PF12329.3 gi|529078212|ref|YP_008377215.1| - 0.027 14.2 0.1 0.042 13.6 0.1 1.2 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding XhlA PF10779.4 gi|529078212|ref|YP_008377215.1| - 0.034 14.0 1.5 0.049 13.5 1.0 1.2 1 0 0 1 1 1 0 Haemolysin XhlA DUF4140 PF13600.1 gi|529078212|ref|YP_008377215.1| - 0.036 14.5 1.1 0.067 13.6 0.8 1.4 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) DUF812 PF05667.6 gi|529078212|ref|YP_008377215.1| - 0.044 12.2 0.0 0.044 12.2 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF812) Cortex-I_coil PF09304.5 gi|529078212|ref|YP_008377215.1| - 0.055 13.5 0.8 0.1 12.6 0.5 1.4 1 0 0 1 1 1 0 Cortexillin I, coiled coil IncA PF04156.9 gi|529078212|ref|YP_008377215.1| - 0.065 12.8 0.2 0.074 12.6 0.2 1.2 1 0 0 1 1 1 0 IncA protein Tropomyosin_1 PF12718.2 gi|529078212|ref|YP_008377215.1| - 0.073 12.9 1.0 0.1 12.4 0.7 1.2 1 0 0 1 1 1 0 Tropomyosin like TPR_MLP1_2 PF07926.7 gi|529078212|ref|YP_008377215.1| - 0.11 12.2 0.6 0.15 11.7 0.4 1.4 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein Phasin PF05597.6 gi|529078212|ref|YP_008377215.1| - 0.11 12.2 0.4 0.89 9.3 0.1 2.1 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Rad51 PF08423.6 gi|529078213|ref|YP_008377216.1| - 0.00034 19.5 0.0 0.00066 18.6 0.0 1.4 1 1 0 1 1 1 1 Rad51 AAA_16 PF13191.1 gi|529078215|ref|YP_008377218.1| - 3.8e-12 46.5 5.3 8.7e-12 45.4 1.0 2.9 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|529078215|ref|YP_008377218.1| - 2.2e-10 40.7 0.1 2.2e-09 37.5 0.0 2.4 1 1 2 3 3 3 1 AAA domain AAA_17 PF13207.1 gi|529078215|ref|YP_008377218.1| - 5.9e-06 27.1 6.5 8.2e-05 23.4 0.1 2.6 1 1 1 2 2 2 1 AAA domain AAA PF00004.24 gi|529078215|ref|YP_008377218.1| - 6.1e-06 26.4 0.0 3.4e-05 24.0 0.0 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.22 gi|529078215|ref|YP_008377218.1| - 0.00057 20.2 0.0 0.0017 18.6 0.0 1.9 2 0 0 2 2 2 1 ABC transporter NTPase_1 PF03266.10 gi|529078215|ref|YP_008377218.1| - 0.00082 19.1 0.1 0.0061 16.2 0.0 2.3 3 0 0 3 3 2 1 NTPase AAA_19 PF13245.1 gi|529078215|ref|YP_008377218.1| - 0.0012 18.4 0.1 0.0069 16.1 0.0 2.3 2 0 0 2 2 2 1 Part of AAA domain AAA_18 PF13238.1 gi|529078215|ref|YP_008377218.1| - 0.0013 19.0 2.1 0.0059 16.9 0.5 2.8 2 1 0 2 2 2 1 AAA domain DUF815 PF05673.8 gi|529078215|ref|YP_008377218.1| - 0.0028 16.6 0.0 0.0048 15.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) RuvB_N PF05496.7 gi|529078215|ref|YP_008377218.1| - 0.0028 16.7 0.1 0.028 13.4 0.1 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Zeta_toxin PF06414.7 gi|529078215|ref|YP_008377218.1| - 0.0029 16.7 0.0 0.0081 15.2 0.0 1.8 2 0 0 2 2 2 1 Zeta toxin AAA_33 PF13671.1 gi|529078215|ref|YP_008377218.1| - 0.005 16.7 0.4 0.076 12.8 0.3 2.8 1 1 0 1 1 1 1 AAA domain Bac_DnaA PF00308.13 gi|529078215|ref|YP_008377218.1| - 0.0058 16.3 0.0 0.012 15.2 0.0 1.5 1 0 0 1 1 1 1 Bacterial dnaA protein AAA_29 PF13555.1 gi|529078215|ref|YP_008377218.1| - 0.0066 15.9 0.6 0.019 14.4 0.2 1.9 1 1 1 2 2 2 1 P-loop containing region of AAA domain NB-ARC PF00931.17 gi|529078215|ref|YP_008377218.1| - 0.007 15.2 0.0 0.011 14.5 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain tRNA_lig_kinase PF08303.6 gi|529078215|ref|YP_008377218.1| - 0.012 15.5 0.4 0.031 14.1 0.0 1.8 2 0 0 2 2 1 0 tRNA ligase kinase domain Cdc6_C PF09079.6 gi|529078215|ref|YP_008377218.1| - 0.017 14.8 0.0 0.04 13.6 0.0 1.7 1 0 0 1 1 1 0 CDC6, C terminal UPF0079 PF02367.12 gi|529078215|ref|YP_008377218.1| - 0.023 14.3 0.4 0.31 10.6 0.0 2.7 3 0 0 3 3 3 0 Uncharacterised P-loop hydrolase UPF0079 Penicillinase_R PF03965.11 gi|529078215|ref|YP_008377218.1| - 0.025 14.6 0.0 0.048 13.7 0.0 1.5 1 0 0 1 1 1 0 Penicillinase repressor APS_kinase PF01583.15 gi|529078215|ref|YP_008377218.1| - 0.027 14.1 0.0 0.051 13.2 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_23 PF13476.1 gi|529078215|ref|YP_008377218.1| - 0.035 14.4 0.0 0.082 13.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain PRK PF00485.13 gi|529078215|ref|YP_008377218.1| - 0.037 13.5 0.0 0.094 12.2 0.0 1.6 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family G-alpha PF00503.15 gi|529078215|ref|YP_008377218.1| - 0.041 12.5 0.0 0.048 12.3 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit Arch_ATPase PF01637.13 gi|529078215|ref|YP_008377218.1| - 0.054 13.1 0.0 0.24 11.0 0.0 2.0 1 1 0 1 1 1 0 Archaeal ATPase AAA_14 PF13173.1 gi|529078215|ref|YP_008377218.1| - 0.058 13.3 0.0 0.14 12.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|529078215|ref|YP_008377218.1| - 0.072 12.8 1.1 0.69 9.6 0.1 3.0 2 2 0 2 2 2 0 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|529078215|ref|YP_008377218.1| - 0.076 12.4 0.0 0.16 11.3 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_10 PF12846.2 gi|529078215|ref|YP_008377218.1| - 0.085 12.2 0.4 0.26 10.6 0.0 1.8 2 1 0 2 2 2 0 AAA-like domain DUF258 PF03193.11 gi|529078215|ref|YP_008377218.1| - 0.13 11.3 0.0 0.23 10.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|529078215|ref|YP_008377218.1| - 0.44 9.9 4.2 0.18 11.2 0.2 2.4 2 2 0 2 2 2 0 AAA domain HTH_20 PF12840.2 gi|529078218|ref|YP_008377221.1| - 7.3e-06 25.7 0.0 1.3e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|529078218|ref|YP_008377221.1| - 4.7e-05 22.6 0.1 8e-05 21.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_1 PF00126.22 gi|529078218|ref|YP_008377221.1| - 0.0023 17.6 0.0 0.0066 16.1 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family TrmB PF01978.14 gi|529078218|ref|YP_008377221.1| - 0.0079 15.8 0.0 0.011 15.4 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|529078218|ref|YP_008377221.1| - 0.018 14.5 0.0 0.031 13.8 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR PF01047.17 gi|529078218|ref|YP_008377221.1| - 0.023 14.4 0.0 0.034 13.8 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.1 gi|529078218|ref|YP_008377221.1| - 0.065 13.5 0.0 0.11 12.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain Cdc6_C PF09079.6 gi|529078218|ref|YP_008377221.1| - 0.11 12.2 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 CDC6, C terminal AAA_21 PF13304.1 gi|529078219|ref|YP_008377222.1| - 1.9e-27 96.9 0.2 3.4e-26 92.8 0.1 2.3 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|529078219|ref|YP_008377222.1| - 4.5e-19 68.7 6.2 1.8e-10 40.4 0.1 2.6 3 0 0 3 3 3 2 AAA ATPase domain DUF2813 PF11398.3 gi|529078219|ref|YP_008377222.1| - 3.3e-13 49.4 0.1 8.5e-07 28.3 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF2813) SMC_N PF02463.14 gi|529078219|ref|YP_008377222.1| - 0.00012 21.4 3.8 0.002 17.3 2.6 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|529078219|ref|YP_008377222.1| - 0.00014 22.2 6.6 0.00027 21.3 2.2 2.8 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|529078219|ref|YP_008377222.1| - 0.0022 17.4 0.0 0.005 16.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain MMR_HSR1 PF01926.18 gi|529078219|ref|YP_008377222.1| - 0.0084 16.0 0.0 0.028 14.3 0.0 1.9 1 0 0 1 1 1 1 50S ribosome-binding GTPase DUF258 PF03193.11 gi|529078219|ref|YP_008377222.1| - 0.038 13.1 0.0 0.068 12.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 HATPase_c_3 PF13589.1 gi|529078220|ref|YP_008377223.1| - 1.2e-23 83.2 1.3 1.4e-23 83.0 0.1 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.21 gi|529078220|ref|YP_008377223.1| - 2.9e-05 23.7 0.0 6.7e-05 22.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UPF0236 PF06782.6 gi|529078221|ref|YP_008377224.1| - 4.1e-07 28.7 0.1 3.2e-05 22.5 0.0 2.2 2 0 0 2 2 2 2 Uncharacterised protein family (UPF0236) Transposase_mut PF00872.13 gi|529078221|ref|YP_008377224.1| - 9.9e-05 21.0 1.5 0.024 13.2 0.1 2.5 2 1 0 2 2 2 2 Transposase, Mutator family DNA_methylase PF00145.12 gi|529078222|ref|YP_008377225.1| - 5.5e-51 173.6 0.0 5.7e-38 130.8 0.0 2.1 2 0 0 2 2 2 2 C-5 cytosine-specific DNA methylase Methyltransf_26 PF13659.1 gi|529078222|ref|YP_008377225.1| - 3e-06 27.2 0.0 7e-06 26.0 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|529078222|ref|YP_008377225.1| - 4.6e-05 23.0 0.1 7.7e-05 22.3 0.1 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase TehB PF03848.9 gi|529078222|ref|YP_008377225.1| - 0.00091 18.4 0.1 0.0076 15.4 0.1 2.0 2 0 0 2 2 2 1 Tellurite resistance protein TehB MTS PF05175.9 gi|529078222|ref|YP_008377225.1| - 0.0015 17.8 0.2 0.0025 17.2 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|529078222|ref|YP_008377225.1| - 0.005 17.4 0.0 0.0082 16.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|529078222|ref|YP_008377225.1| - 0.088 11.9 0.1 0.12 11.4 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) AAA_3 PF07726.6 gi|529078223|ref|YP_008377226.1| - 3.6e-64 214.2 0.1 5.9e-64 213.5 0.1 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|529078223|ref|YP_008377226.1| - 3.1e-14 52.8 0.0 8.5e-14 51.4 0.0 1.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|529078223|ref|YP_008377226.1| - 5.7e-06 25.3 0.0 0.0001 21.2 0.0 2.1 2 0 0 2 2 2 1 MCM2/3/5 family AAA PF00004.24 gi|529078223|ref|YP_008377226.1| - 2.2e-05 24.6 0.0 3.7e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|529078223|ref|YP_008377226.1| - 8.8e-05 22.0 0.0 0.0007 19.1 0.0 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|529078223|ref|YP_008377226.1| - 0.00011 21.4 0.2 0.26 10.4 0.0 2.6 2 1 0 2 2 2 2 Magnesium chelatase, subunit ChlI RuvB_N PF05496.7 gi|529078223|ref|YP_008377226.1| - 0.1 11.6 0.6 1.1 8.2 0.0 2.6 2 1 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus DUF4129 PF13559.1 gi|529078224|ref|YP_008377227.1| - 2.5e-10 40.1 4.1 2.5e-10 40.1 2.8 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF4129) TPR_16 PF13432.1 gi|529078224|ref|YP_008377227.1| - 0.32 11.7 2.4 4.4 8.0 0.2 2.4 2 0 0 2 2 2 0 Tetratricopeptide repeat DUF3093 PF11292.3 gi|529078224|ref|YP_008377227.1| - 0.7 9.6 7.2 1.1 9.0 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3093) DUF58 PF01882.13 gi|529078225|ref|YP_008377228.1| - 3.5e-15 55.8 0.2 5e-14 52.2 0.0 2.5 2 0 0 2 2 2 1 Protein of unknown function DUF58 DUF11 PF01345.13 gi|529078225|ref|YP_008377228.1| - 4.8e-12 45.7 3.3 4.8e-12 45.7 2.3 2.3 2 0 0 2 2 2 1 Domain of unknown function DUF11 NPCBM_assoc PF10633.4 gi|529078225|ref|YP_008377228.1| - 8.5e-08 32.1 2.8 1.7e-07 31.2 0.2 2.4 2 0 0 2 2 2 1 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|529078225|ref|YP_008377228.1| - 0.00028 20.9 0.0 0.00062 19.7 0.0 1.5 1 0 0 1 1 1 1 CARDB DUF533 PF04391.7 gi|529078225|ref|YP_008377228.1| - 0.0056 16.0 0.0 0.011 15.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF533) TRAP_beta PF05753.9 gi|529078225|ref|YP_008377228.1| - 0.17 11.0 0.0 0.31 10.1 0.0 1.3 1 0 0 1 1 1 0 Translocon-associated protein beta (TRAPB) Nuc_sug_transp PF04142.10 gi|529078226|ref|YP_008377229.1| - 0.1 11.6 2.3 0.12 11.4 0.1 1.8 1 1 1 2 2 2 0 Nucleotide-sugar transporter MARVEL PF01284.18 gi|529078226|ref|YP_008377229.1| - 3.5 7.4 11.9 9.9 5.9 8.3 1.9 1 1 0 1 1 1 0 Membrane-associating domain DUF502 PF04367.8 gi|529078227|ref|YP_008377230.1| - 1.7e-27 95.3 2.0 2e-27 95.0 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF502) RGP PF03214.8 gi|529078228|ref|YP_008377231.1| - 6.6e-13 48.1 0.0 8e-13 47.8 0.0 1.2 1 0 0 1 1 1 1 Reversibly glycosylated polypeptide SBP_bac_6 PF13343.1 gi|529078229|ref|YP_008377232.1| - 6.3e-15 55.1 0.0 8.2e-15 54.7 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|529078229|ref|YP_008377232.1| - 6.7e-08 32.5 2.4 1e-07 32.0 1.7 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|529078229|ref|YP_008377232.1| - 2.6e-06 27.2 4.8 6.6e-06 25.9 3.3 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|529078229|ref|YP_008377232.1| - 0.0016 18.2 3.8 0.0099 15.6 2.7 2.0 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein CytB6-F_Fe-S PF08802.5 gi|529078229|ref|YP_008377232.1| - 0.12 12.4 0.2 0.34 10.9 0.1 1.8 1 0 0 1 1 1 0 Cytochrome B6-F complex Fe-S subunit TAT_signal PF10518.4 gi|529078229|ref|YP_008377232.1| - 0.23 11.5 8.7 0.14 12.2 4.1 2.2 1 1 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.17 gi|529078230|ref|YP_008377233.1| - 7.2e-29 100.6 34.9 8.1e-16 58.0 9.9 3.4 3 1 1 4 4 4 2 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|529078231|ref|YP_008377234.1| - 4.6e-34 117.6 0.0 7.1e-34 117.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|529078231|ref|YP_008377234.1| - 5.5e-10 39.0 0.4 2.1e-09 37.2 0.1 2.2 2 0 0 2 2 1 1 TOBE domain AAA_21 PF13304.1 gi|529078231|ref|YP_008377234.1| - 1.8e-08 34.7 0.0 6.4e-05 23.0 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|529078231|ref|YP_008377234.1| - 3.8e-05 23.7 0.8 0.00014 21.9 0.5 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|529078231|ref|YP_008377234.1| - 0.00056 20.0 0.1 0.0025 17.9 0.1 1.9 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.10 gi|529078231|ref|YP_008377234.1| - 0.00071 18.3 0.1 0.0011 17.7 0.0 1.2 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA PF00004.24 gi|529078231|ref|YP_008377234.1| - 0.0021 18.2 0.0 0.014 15.6 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|529078231|ref|YP_008377234.1| - 0.017 14.3 0.0 0.034 13.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|529078231|ref|YP_008377234.1| - 0.037 13.0 0.0 0.1 11.6 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain AAA_17 PF13207.1 gi|529078231|ref|YP_008377234.1| - 0.044 14.6 0.3 0.11 13.2 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|529078231|ref|YP_008377234.1| - 0.058 12.7 0.0 0.48 9.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|529078231|ref|YP_008377234.1| - 0.064 13.2 0.6 0.14 12.1 0.1 1.8 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|529078231|ref|YP_008377234.1| - 0.067 13.1 0.1 0.29 11.0 0.1 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.1 gi|529078231|ref|YP_008377234.1| - 0.071 12.9 0.6 0.52 10.1 0.4 2.3 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|529078231|ref|YP_008377234.1| - 0.072 13.3 0.0 0.22 11.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain PMT_2 PF13231.1 gi|529078232|ref|YP_008377235.1| - 3.1e-14 53.1 7.8 3.1e-14 53.1 5.4 3.4 4 0 0 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.13 gi|529078232|ref|YP_008377235.1| - 5.3e-06 25.9 5.3 1.2e-05 24.8 3.6 1.5 1 0 0 1 1 1 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Gluconate_2-dh3 PF13618.1 gi|529078233|ref|YP_008377236.1| - 9.6e-17 61.3 0.0 1.5e-16 60.7 0.0 1.3 1 0 0 1 1 1 1 Gluconate 2-dehydrogenase subunit 3 GMC_oxred_C PF05199.8 gi|529078234|ref|YP_008377237.1| - 4.4e-24 85.4 0.4 4.1e-23 82.2 0.3 2.2 1 1 0 1 1 1 1 GMC oxidoreductase GMC_oxred_N PF00732.14 gi|529078234|ref|YP_008377237.1| - 2.4e-15 56.4 0.0 3.9e-15 55.7 0.0 1.3 1 0 0 1 1 1 1 GMC oxidoreductase DAO PF01266.19 gi|529078234|ref|YP_008377237.1| - 5.6e-12 45.2 2.3 1.2e-05 24.4 0.1 3.1 3 0 0 3 3 3 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|529078234|ref|YP_008377237.1| - 2.2e-08 33.3 2.0 0.0024 16.7 0.3 2.4 2 0 0 2 2 2 2 FAD binding domain FAD_binding_3 PF01494.14 gi|529078234|ref|YP_008377237.1| - 8.7e-07 28.3 1.5 5.9e-05 22.2 0.0 2.2 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.1 gi|529078234|ref|YP_008377237.1| - 2.6e-06 27.3 0.1 7.9e-06 25.8 0.1 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|529078234|ref|YP_008377237.1| - 4.9e-05 22.4 0.2 7.4e-05 21.8 0.1 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein Pyr_redox_2 PF07992.9 gi|529078234|ref|YP_008377237.1| - 0.00019 21.3 0.1 0.002 18.0 0.1 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|529078234|ref|YP_008377237.1| - 0.00023 19.7 0.4 0.0013 17.2 0.2 1.9 2 0 0 2 2 2 1 HI0933-like protein Fer4_7 PF12838.2 gi|529078234|ref|YP_008377237.1| - 0.0022 18.3 0.9 0.0054 17.0 0.6 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Thi4 PF01946.12 gi|529078234|ref|YP_008377237.1| - 0.004 16.2 0.0 0.0072 15.4 0.0 1.3 1 0 0 1 1 1 1 Thi4 family ApbA PF02558.11 gi|529078234|ref|YP_008377237.1| - 0.0042 16.5 0.1 0.0083 15.5 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.13 gi|529078234|ref|YP_008377237.1| - 0.02 14.5 0.0 0.04 13.5 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|529078234|ref|YP_008377237.1| - 0.021 13.9 0.0 0.036 13.2 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Fer4_8 PF13183.1 gi|529078234|ref|YP_008377237.1| - 0.032 14.2 0.1 0.064 13.2 0.1 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Pyr_redox PF00070.22 gi|529078234|ref|YP_008377237.1| - 0.044 14.1 0.0 0.11 12.9 0.0 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.13 gi|529078234|ref|YP_008377237.1| - 0.071 13.1 0.0 0.17 11.9 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain Fer4_10 PF13237.1 gi|529078234|ref|YP_008377237.1| - 0.096 12.5 0.2 0.19 11.5 0.2 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|529078234|ref|YP_008377237.1| - 0.098 13.0 0.0 0.23 11.8 0.0 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|529078234|ref|YP_008377237.1| - 0.1 13.1 0.7 0.3 11.6 0.5 1.8 1 0 0 1 1 1 0 4Fe-4S single cluster domain F420_oxidored PF03807.12 gi|529078234|ref|YP_008377237.1| - 0.11 12.9 0.0 0.24 11.8 0.0 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent GIDA PF01134.17 gi|529078234|ref|YP_008377237.1| - 0.27 10.0 0.5 0.9 8.3 0.1 1.8 2 0 0 2 2 2 0 Glucose inhibited division protein A Fer4 PF00037.22 gi|529078234|ref|YP_008377237.1| - 0.39 10.3 3.5 0.14 11.8 0.5 1.8 2 0 0 2 2 1 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|529078234|ref|YP_008377237.1| - 1.1 9.9 3.5 2.8 8.7 2.4 1.6 1 0 0 1 1 1 0 4Fe-4S binding domain Glycos_transf_2 PF00535.21 gi|529078236|ref|YP_008377239.1| - 1.4e-20 73.6 0.0 1.8e-20 73.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|529078236|ref|YP_008377239.1| - 2.9e-07 30.5 0.3 3.7e-07 30.1 0.2 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 KaiC PF06745.8 gi|529078238|ref|YP_008377241.1| - 3e-39 134.4 0.0 3.4e-39 134.2 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|529078238|ref|YP_008377241.1| - 1.6e-07 30.9 0.0 2.5e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|529078238|ref|YP_008377241.1| - 4.8e-06 25.1 0.0 6.4e-05 21.4 0.0 2.0 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_10 PF12846.2 gi|529078238|ref|YP_008377241.1| - 4.9e-05 22.9 0.0 5.6e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 AAA-like domain AAA_19 PF13245.1 gi|529078238|ref|YP_008377241.1| - 6.6e-05 22.5 0.0 0.00013 21.6 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain IstB_IS21 PF01695.12 gi|529078238|ref|YP_008377241.1| - 0.001 18.4 0.0 0.0017 17.7 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein Arch_ATPase PF01637.13 gi|529078238|ref|YP_008377241.1| - 0.0011 18.6 0.0 0.0019 17.9 0.0 1.4 1 1 0 1 1 1 1 Archaeal ATPase AAA_22 PF13401.1 gi|529078238|ref|YP_008377241.1| - 0.002 18.2 0.3 0.0064 16.6 0.2 1.8 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|529078238|ref|YP_008377241.1| - 0.0022 17.9 0.2 0.003 17.4 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|529078238|ref|YP_008377241.1| - 0.0028 18.4 0.3 0.0083 16.9 0.1 1.9 2 1 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|529078238|ref|YP_008377241.1| - 0.0038 17.1 0.0 0.01 15.7 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|529078238|ref|YP_008377241.1| - 0.0045 16.9 0.0 0.0077 16.2 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|529078238|ref|YP_008377241.1| - 0.0055 16.9 0.8 0.12 12.6 0.6 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RecA PF00154.16 gi|529078238|ref|YP_008377241.1| - 0.0073 15.3 0.0 0.012 14.6 0.0 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_28 PF13521.1 gi|529078238|ref|YP_008377241.1| - 0.011 15.7 0.0 0.032 14.1 0.0 1.8 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|529078238|ref|YP_008377241.1| - 0.012 15.2 0.0 0.024 14.2 0.0 1.5 1 0 0 1 1 1 0 NACHT domain T2SE PF00437.15 gi|529078238|ref|YP_008377241.1| - 0.022 13.6 0.0 0.036 12.9 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_31 PF13614.1 gi|529078238|ref|YP_008377241.1| - 0.024 14.5 0.0 0.15 12.0 0.0 2.1 1 1 1 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|529078238|ref|YP_008377241.1| - 0.025 13.6 0.0 0.037 13.1 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin DnaB_C PF03796.10 gi|529078238|ref|YP_008377241.1| - 0.054 12.3 0.0 0.083 11.7 0.0 1.3 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain ABC_tran PF00005.22 gi|529078238|ref|YP_008377241.1| - 0.055 13.7 0.0 0.075 13.3 0.0 1.4 1 1 0 1 1 1 0 ABC transporter cobW PF02492.14 gi|529078238|ref|YP_008377241.1| - 0.074 12.4 0.1 0.13 11.7 0.1 1.7 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain KTI12 PF08433.5 gi|529078238|ref|YP_008377241.1| - 0.088 12.0 0.0 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 CobU PF02283.11 gi|529078238|ref|YP_008377241.1| - 0.1 11.9 0.1 9.3 5.6 0.0 2.2 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA_18 PF13238.1 gi|529078238|ref|YP_008377241.1| - 0.11 12.8 0.4 0.17 12.1 0.2 1.6 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|529078238|ref|YP_008377241.1| - 0.12 11.9 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|529078238|ref|YP_008377241.1| - 0.12 12.5 0.1 0.25 11.5 0.1 1.6 1 1 0 1 1 1 0 RNA helicase zf-ribbon_3 PF13248.1 gi|529078239|ref|YP_008377242.1| - 4.6e-05 22.4 3.0 6.8e-05 21.9 2.1 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|529078239|ref|YP_008377242.1| - 0.0021 17.8 0.6 0.0025 17.6 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|529078239|ref|YP_008377242.1| - 0.0075 15.7 6.1 0.015 14.7 4.2 1.5 1 1 0 1 1 1 1 zinc-ribbon domain DUF164 PF02591.10 gi|529078239|ref|YP_008377242.1| - 0.067 13.0 1.6 0.23 11.2 0.0 2.0 2 0 0 2 2 2 0 Putative zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|529078239|ref|YP_008377242.1| - 0.073 12.5 2.7 0.2 11.1 0.1 2.1 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-Sec23_Sec24 PF04810.10 gi|529078239|ref|YP_008377242.1| - 0.089 12.3 1.2 0.1 12.1 0.0 1.7 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger HypA PF01155.14 gi|529078239|ref|YP_008377242.1| - 0.14 11.8 1.1 0.18 11.4 0.7 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zinc_ribbon_5 PF13719.1 gi|529078239|ref|YP_008377242.1| - 0.17 11.4 0.0 0.17 11.4 0.0 1.9 2 0 0 2 2 2 0 zinc-ribbon domain zinc-ribbons_6 PF07191.7 gi|529078239|ref|YP_008377242.1| - 0.19 11.5 1.4 0.25 11.1 1.0 1.2 1 0 0 1 1 1 0 zinc-ribbons zinc_ribbon_4 PF13717.1 gi|529078239|ref|YP_008377242.1| - 0.21 11.3 2.5 0.21 11.3 0.0 1.9 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|529078239|ref|YP_008377242.1| - 0.25 10.7 4.7 0.47 9.8 3.3 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding DUF35_N PF12172.3 gi|529078239|ref|YP_008377242.1| - 0.32 10.9 2.7 1.2 9.1 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn-ribbon_8 PF09723.5 gi|529078239|ref|YP_008377242.1| - 1.2 9.1 0.1 1.2 9.1 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain Lar_restr_allev PF14354.1 gi|529078239|ref|YP_008377242.1| - 1.8 8.9 4.8 7.4 6.9 3.2 1.9 1 1 0 1 1 1 0 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.2 gi|529078239|ref|YP_008377242.1| - 2 8.3 5.7 5.2 6.9 3.9 1.7 1 1 0 1 1 1 0 Transposase zinc-ribbon domain HalX PF08663.5 gi|529078240|ref|YP_008377243.1| - 9e-19 67.2 4.5 9e-19 67.2 3.1 2.2 2 1 0 2 2 2 1 HalX domain Response_reg PF00072.19 gi|529078240|ref|YP_008377243.1| - 1.6e-16 60.3 0.2 2.4e-16 59.6 0.1 1.3 1 0 0 1 1 1 1 Response regulator receiver domain zf-ribbon_3 PF13248.1 gi|529078241|ref|YP_008377244.1| - 0.016 14.3 0.5 0.028 13.6 0.0 1.7 2 0 0 2 2 2 0 zinc-ribbon domain Cys_rich_CPXG PF14255.1 gi|529078241|ref|YP_008377244.1| - 0.026 14.3 0.1 0.041 13.6 0.1 1.3 1 0 0 1 1 1 0 Cysteine-rich CPXCG zf-Mss51 PF13824.1 gi|529078241|ref|YP_008377244.1| - 0.12 12.2 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF2296 PF10058.4 gi|529078241|ref|YP_008377244.1| - 0.14 11.9 0.2 0.44 10.3 0.2 1.8 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) TF_Zn_Ribbon PF08271.7 gi|529078241|ref|YP_008377244.1| - 0.27 10.5 1.4 0.42 9.9 0.0 2.0 3 0 0 3 3 3 0 TFIIB zinc-binding DUF63 PF01889.12 gi|529078243|ref|YP_008377246.1| - 0.078 13.0 0.1 0.088 12.8 0.1 1.0 1 0 0 1 1 1 0 Membrane protein of unknown function DUF63 DUF3341 PF11821.3 gi|529078244|ref|YP_008377247.1| - 0.018 14.5 0.7 0.029 13.8 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3341) Pro_isomerase PF00160.16 gi|529078245|ref|YP_008377248.1| - 1.9e-46 158.0 0.0 2.3e-46 157.8 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Acetyltransf_3 PF13302.1 gi|529078246|ref|YP_008377249.1| - 7.7e-26 90.9 0.0 9.2e-26 90.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|529078246|ref|YP_008377249.1| - 7.8e-21 74.6 0.0 8.8e-21 74.4 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|529078246|ref|YP_008377249.1| - 5.3e-12 45.5 0.0 8.4e-12 44.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.1 gi|529078246|ref|YP_008377249.1| - 1.3e-08 34.9 0.0 1.7e-08 34.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|529078246|ref|YP_008377249.1| - 0.00021 21.4 0.0 0.00027 21.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|529078246|ref|YP_008377249.1| - 0.075 12.7 0.0 0.17 11.6 0.0 1.6 1 1 0 1 1 1 0 FR47-like protein SBP_bac_5 PF00496.17 gi|529078247|ref|YP_008377250.1| - 5.2e-50 170.3 7.3 4.4e-41 140.9 0.3 2.1 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|529078247|ref|YP_008377250.1| - 0.0004 20.1 2.9 0.00079 19.2 2.0 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|529078247|ref|YP_008377250.1| - 0.044 12.9 0.1 0.081 12.1 0.0 1.4 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Myco_19_kDa PF05481.7 gi|529078247|ref|YP_008377250.1| - 0.078 12.8 1.8 0.57 9.9 0.1 2.3 2 0 0 2 2 2 0 Mycobacterium 19 kDa lipoprotein antigen BPD_transp_1 PF00528.17 gi|529078248|ref|YP_008377251.1| - 7.6e-31 107.0 11.6 7.6e-31 107.0 8.0 2.1 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|529078249|ref|YP_008377252.1| - 5e-16 58.7 16.3 5e-16 58.7 11.3 2.3 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|529078249|ref|YP_008377252.1| - 7.2e-05 22.0 0.0 7.2e-05 22.0 0.0 3.3 5 0 0 5 5 5 1 N-terminal TM domain of oligopeptide transport permease C NfeD PF01957.13 gi|529078249|ref|YP_008377252.1| - 1.7 8.7 0.0 1.7 8.7 0.0 4.1 4 0 0 4 4 4 0 NfeD-like C-terminal, partner-binding ABC_tran PF00005.22 gi|529078250|ref|YP_008377253.1| - 2e-30 105.8 0.0 3.2e-30 105.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|529078250|ref|YP_008377253.1| - 3.8e-19 68.7 0.7 8.8e-19 67.6 0.5 1.7 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|529078250|ref|YP_008377253.1| - 5.6e-11 42.9 0.1 1.1e-08 35.4 0.0 2.1 1 1 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|529078250|ref|YP_008377253.1| - 8.1e-06 25.2 0.0 1.3e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|529078250|ref|YP_008377253.1| - 0.0014 18.8 0.4 0.86 9.7 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|529078250|ref|YP_008377253.1| - 0.0038 16.3 0.1 0.01 14.9 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain AAA_10 PF12846.2 gi|529078250|ref|YP_008377253.1| - 0.02 14.3 3.2 0.12 11.7 0.5 2.3 2 1 0 2 2 2 0 AAA-like domain AAA_25 PF13481.1 gi|529078250|ref|YP_008377253.1| - 0.032 13.6 0.2 0.41 10.0 0.0 2.4 2 1 1 3 3 3 0 AAA domain AAA_16 PF13191.1 gi|529078250|ref|YP_008377253.1| - 0.032 14.2 0.3 0.077 12.9 0.2 1.8 1 1 0 1 1 1 0 AAA ATPase domain DUF87 PF01935.12 gi|529078250|ref|YP_008377253.1| - 0.045 13.5 0.1 0.1 12.3 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function DUF87 AAA_29 PF13555.1 gi|529078250|ref|YP_008377253.1| - 0.063 12.8 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain FtsK_SpoIIIE PF01580.13 gi|529078250|ref|YP_008377253.1| - 0.075 12.5 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family ATP-synt_ab PF00006.20 gi|529078250|ref|YP_008377253.1| - 0.078 12.4 0.1 0.14 11.6 0.1 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA PF00004.24 gi|529078250|ref|YP_008377253.1| - 0.086 13.0 0.0 1.6 8.9 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|529078250|ref|YP_008377253.1| - 0.087 12.3 0.1 0.37 10.2 0.0 1.9 2 0 0 2 2 2 0 Sigma-54 interaction domain ABC_tran PF00005.22 gi|529078251|ref|YP_008377254.1| - 1.3e-36 125.8 0.0 2.2e-36 125.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|529078251|ref|YP_008377254.1| - 1.1e-14 54.5 0.5 2.7e-14 53.2 0.3 1.7 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|529078251|ref|YP_008377254.1| - 2.1e-08 34.5 0.1 1.9e-05 24.8 0.0 2.2 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|529078251|ref|YP_008377254.1| - 0.0012 18.0 0.0 0.0037 16.5 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|529078251|ref|YP_008377254.1| - 0.0019 18.3 0.2 0.0076 16.3 0.1 1.9 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|529078251|ref|YP_008377254.1| - 0.0037 16.4 0.1 0.0068 15.6 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|529078251|ref|YP_008377254.1| - 0.0042 17.0 2.8 0.022 14.7 0.8 2.5 2 1 0 2 2 2 1 AAA ATPase domain Sigma54_activat PF00158.21 gi|529078251|ref|YP_008377254.1| - 0.015 14.8 0.1 6 6.3 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_29 PF13555.1 gi|529078251|ref|YP_008377254.1| - 0.016 14.7 0.2 0.034 13.6 0.2 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATP-synt_ab PF00006.20 gi|529078251|ref|YP_008377254.1| - 0.03 13.8 0.0 0.08 12.4 0.1 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_18 PF13238.1 gi|529078251|ref|YP_008377254.1| - 0.05 13.9 0.0 0.14 12.4 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|529078251|ref|YP_008377254.1| - 0.068 12.8 0.1 1.2 8.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) MMR_HSR1 PF01926.18 gi|529078251|ref|YP_008377254.1| - 0.079 12.9 0.0 0.17 11.8 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_13 PF13166.1 gi|529078251|ref|YP_008377254.1| - 0.28 9.5 0.1 10 4.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain DUF4131 PF13567.1 gi|529078252|ref|YP_008377255.1| - 0.038 13.4 0.3 0.047 13.0 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) ABC_tran PF00005.22 gi|529078254|ref|YP_008377257.1| - 9.6e-27 93.9 0.0 1.5e-26 93.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|529078254|ref|YP_008377257.1| - 8.8e-16 58.6 0.1 8e-11 42.4 0.0 2.3 1 1 1 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|529078254|ref|YP_008377257.1| - 0.0023 18.2 0.1 0.0054 17.0 0.1 1.5 1 0 0 1 1 1 1 AAA domain UPF0079 PF02367.12 gi|529078254|ref|YP_008377257.1| - 0.0029 17.2 0.1 0.66 9.6 0.1 2.3 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 AAA_25 PF13481.1 gi|529078254|ref|YP_008377257.1| - 0.0079 15.6 0.0 0.014 14.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain SRP54 PF00448.17 gi|529078254|ref|YP_008377257.1| - 0.01 15.2 0.1 0.018 14.5 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_15 PF13175.1 gi|529078254|ref|YP_008377257.1| - 0.016 14.2 0.0 0.078 12.0 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_29 PF13555.1 gi|529078254|ref|YP_008377257.1| - 0.024 14.1 0.1 0.049 13.1 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|529078254|ref|YP_008377257.1| - 0.04 13.8 0.1 0.38 10.7 0.0 2.5 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.1 gi|529078254|ref|YP_008377257.1| - 0.069 13.2 0.2 0.67 10.0 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|529078254|ref|YP_008377257.1| - 0.13 12.0 0.1 0.25 11.1 0.1 1.7 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|529078254|ref|YP_008377257.1| - 0.15 11.2 0.0 0.25 10.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 ABC2_membrane_2 PF12679.2 gi|529078255|ref|YP_008377258.1| - 1e-12 47.5 9.0 1e-12 47.5 6.3 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|529078255|ref|YP_008377258.1| - 1.1e-12 47.5 6.0 1.5e-12 47.2 4.1 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|529078255|ref|YP_008377258.1| - 7.6e-06 25.1 3.4 7.6e-06 25.1 2.3 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|529078255|ref|YP_008377258.1| - 0.0018 17.5 0.4 0.0036 16.6 0.3 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|529078255|ref|YP_008377258.1| - 0.0057 15.8 3.3 0.011 14.8 2.3 1.5 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_4 PF12730.2 gi|529078256|ref|YP_008377259.1| - 5.4e-13 48.6 8.4 7e-13 48.2 5.9 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|529078256|ref|YP_008377259.1| - 1e-09 37.6 8.3 1.6e-09 37.0 5.8 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|529078256|ref|YP_008377259.1| - 0.00064 19.0 1.5 0.0012 18.2 0.2 1.9 2 0 0 2 2 2 1 ABC-2 family transporter protein Metallophos_2 PF12850.2 gi|529078257|ref|YP_008377260.1| - 7.1e-27 94.1 0.2 8.9e-27 93.8 0.1 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|529078257|ref|YP_008377260.1| - 7.9e-07 28.6 1.2 0.00032 20.1 0.8 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Usp PF00582.21 gi|529078257|ref|YP_008377260.1| - 0.0063 16.7 3.0 0.011 15.8 1.7 1.7 1 1 0 1 1 1 1 Universal stress protein family Glyco_trans_4_4 PF13579.1 gi|529078257|ref|YP_008377260.1| - 0.36 10.9 7.9 0.98 9.5 5.5 1.9 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain SPW PF03779.9 gi|529078258|ref|YP_008377261.1| - 0.0099 15.2 1.2 0.015 14.6 0.9 1.3 1 0 0 1 1 1 1 SPW repeat TraL PF07178.6 gi|529078258|ref|YP_008377261.1| - 0.039 13.9 0.1 0.039 13.9 0.1 1.0 1 0 0 1 1 1 0 TraL protein P12 PF12669.2 gi|529078258|ref|YP_008377261.1| - 0.072 13.3 0.6 0.079 13.1 0.4 1.1 1 0 0 1 1 1 0 Virus attachment protein p12 family PetG PF02529.10 gi|529078258|ref|YP_008377261.1| - 0.16 11.5 3.9 0.41 10.2 2.7 1.9 1 1 0 1 1 1 0 Cytochrome B6-F complex subunit 5 DUF969 PF06149.7 gi|529078258|ref|YP_008377261.1| - 0.33 10.1 3.6 0.44 9.7 2.5 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF969) Peptidase_M29 PF02073.10 gi|529078260|ref|YP_008377263.1| - 2.7e-103 345.8 0.8 3.1e-103 345.6 0.5 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) Peptidase_M29 PF02073.10 gi|529078261|ref|YP_008377264.1| - 3.4e-93 312.5 0.2 3.9e-93 312.3 0.2 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) DUF373 PF04123.8 gi|529078262|ref|YP_008377265.1| - 3.2e-110 368.3 9.1 3.9e-110 368.1 6.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) PsbL PF02419.12 gi|529078262|ref|YP_008377265.1| - 0.12 11.8 0.1 0.42 10.0 0.1 1.9 1 0 0 1 1 1 0 PsbL protein DUF192 PF02643.10 gi|529078263|ref|YP_008377266.1| - 1.5e-29 101.8 0.0 1.8e-29 101.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 Creatininase PF02633.9 gi|529078264|ref|YP_008377267.1| - 1.2e-69 233.9 2.0 1.4e-69 233.8 1.4 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase CBS PF00571.23 gi|529078264|ref|YP_008377267.1| - 0.07 12.9 0.0 0.18 11.5 0.0 1.8 1 0 0 1 1 1 0 CBS domain NIT PF08376.5 gi|529078265|ref|YP_008377268.1| - 0.045 13.2 0.7 1.2 8.5 0.1 2.1 1 1 1 2 2 2 0 Nitrate and nitrite sensing DUF883 PF05957.8 gi|529078265|ref|YP_008377268.1| - 0.094 13.1 0.9 2.8 8.3 0.0 2.4 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) Laminin_II PF06009.7 gi|529078265|ref|YP_008377268.1| - 0.12 12.1 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 Laminin Domain II TPR_MLP1_2 PF07926.7 gi|529078265|ref|YP_008377268.1| - 0.13 12.0 0.2 0.56 9.9 0.0 2.0 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein NPV_P10 PF05531.7 gi|529078265|ref|YP_008377268.1| - 0.15 12.3 0.3 0.54 10.5 0.1 1.9 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF4398 PF14346.1 gi|529078265|ref|YP_008377268.1| - 0.86 9.6 5.2 3.9 7.5 2.5 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4398) DUF372 PF04036.7 gi|529078267|ref|YP_008377270.1| - 5.1e-18 64.2 0.4 1e-17 63.3 0.2 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF372) DUF381 PF04038.7 gi|529078267|ref|YP_008377270.1| - 1.7e-13 50.4 0.5 2.2e-13 50.0 0.4 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF381) GPW_gp25 PF04965.9 gi|529078267|ref|YP_008377270.1| - 0.0082 15.6 0.0 0.013 15.0 0.0 1.4 1 0 0 1 1 1 1 Gene 25-like lysozyme Aldo_ket_red PF00248.16 gi|529078268|ref|YP_008377271.1| - 4.8e-60 202.7 0.0 5.5e-60 202.5 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family tRNA-synt_1 PF00133.17 gi|529078269|ref|YP_008377272.1| - 4.2e-178 593.1 1.4 4.2e-178 593.1 1.0 1.4 2 0 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|529078269|ref|YP_008377272.1| - 7e-30 103.7 0.0 1.6e-29 102.6 0.0 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|529078269|ref|YP_008377272.1| - 7.4e-28 97.3 0.2 1.3e-09 37.2 0.0 4.1 4 1 0 4 4 4 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.1 gi|529078269|ref|YP_008377272.1| - 0.00034 19.9 0.0 0.00088 18.6 0.0 1.6 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 FaeA PF04703.7 gi|529078270|ref|YP_008377273.1| - 0.014 15.5 0.1 0.015 15.4 0.0 1.0 1 0 0 1 1 1 0 FaeA-like protein HTH_DeoR PF08220.7 gi|529078270|ref|YP_008377273.1| - 0.015 14.8 0.3 0.017 14.6 0.2 1.1 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain PaaX PF07848.7 gi|529078270|ref|YP_008377273.1| - 0.026 14.5 0.1 0.031 14.2 0.1 1.1 1 0 0 1 1 1 0 PaaX-like protein HTH_Crp_2 PF13545.1 gi|529078270|ref|YP_008377273.1| - 0.045 13.5 0.0 0.049 13.4 0.0 1.1 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Mnd1 PF03962.10 gi|529078270|ref|YP_008377273.1| - 0.062 12.9 0.0 0.065 12.8 0.0 1.0 1 0 0 1 1 1 0 Mnd1 family HTH_27 PF13463.1 gi|529078270|ref|YP_008377273.1| - 0.087 13.1 0.0 0.11 12.8 0.0 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain TrmB PF01978.14 gi|529078270|ref|YP_008377273.1| - 0.1 12.3 0.0 0.11 12.1 0.0 1.0 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB TrmB PF01978.14 gi|529078271|ref|YP_008377274.1| - 3.8e-11 42.5 0.0 5.2e-11 42.0 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|529078271|ref|YP_008377274.1| - 1.7e-06 27.7 0.2 3.3e-06 26.8 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|529078271|ref|YP_008377274.1| - 3.3e-06 26.5 0.2 6.1e-06 25.7 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|529078271|ref|YP_008377274.1| - 0.00027 20.5 0.0 0.00076 19.0 0.0 1.8 2 1 0 2 2 2 1 HTH domain FUR PF01475.14 gi|529078271|ref|YP_008377274.1| - 0.0021 17.9 0.0 0.0048 16.8 0.0 1.6 1 1 0 1 1 1 1 Ferric uptake regulator family MarR PF01047.17 gi|529078271|ref|YP_008377274.1| - 0.0026 17.4 0.0 0.004 16.8 0.0 1.3 1 0 0 1 1 1 1 MarR family PadR PF03551.9 gi|529078271|ref|YP_008377274.1| - 0.0078 15.9 0.0 0.017 14.8 0.0 1.6 1 1 1 2 2 2 1 Transcriptional regulator PadR-like family HTH_42 PF06224.7 gi|529078271|ref|YP_008377274.1| - 0.022 14.0 0.6 0.026 13.8 0.4 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|529078271|ref|YP_008377274.1| - 0.032 13.8 0.1 0.053 13.2 0.0 1.3 1 0 0 1 1 1 0 MarR family DUF387 PF04079.11 gi|529078271|ref|YP_008377274.1| - 0.041 13.2 0.0 0.079 12.3 0.0 1.5 1 1 0 1 1 1 0 Putative transcriptional regulators (Ypuh-like) HTH_24 PF13412.1 gi|529078271|ref|YP_008377274.1| - 0.05 12.9 0.0 0.071 12.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding B1 PF02246.10 gi|529078271|ref|YP_008377274.1| - 0.095 12.5 0.0 0.18 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein L b1 domain HTH_5 PF01022.15 gi|529078271|ref|YP_008377274.1| - 0.096 12.3 0.0 0.18 11.4 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family FeoC PF09012.5 gi|529078271|ref|YP_008377274.1| - 0.14 11.9 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_5 PF01022.15 gi|529078272|ref|YP_008377275.1| - 6.3e-16 57.7 0.1 1.2e-15 56.9 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|529078272|ref|YP_008377275.1| - 2.1e-12 46.6 0.0 3.4e-12 45.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|529078272|ref|YP_008377275.1| - 6.8e-10 38.1 0.1 1e-09 37.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|529078272|ref|YP_008377275.1| - 1.6e-09 37.2 0.1 2.6e-09 36.4 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|529078272|ref|YP_008377275.1| - 1.6e-07 30.9 0.0 3.3e-07 29.8 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|529078272|ref|YP_008377275.1| - 5.1e-07 29.2 0.0 7.7e-07 28.7 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|529078272|ref|YP_008377275.1| - 6.4e-06 25.7 0.2 1.6e-05 24.5 0.0 1.6 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.1 gi|529078272|ref|YP_008377275.1| - 9.3e-05 22.6 0.1 0.00027 21.1 0.1 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_23 PF13384.1 gi|529078272|ref|YP_008377275.1| - 0.0001 21.7 0.0 0.00017 21.1 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain RepL PF05732.6 gi|529078272|ref|YP_008377275.1| - 0.00036 19.7 0.0 0.00086 18.5 0.0 1.6 2 0 0 2 2 2 1 Firmicute plasmid replication protein (RepL) HTH_11 PF08279.7 gi|529078272|ref|YP_008377275.1| - 0.0004 19.9 0.1 0.0006 19.4 0.1 1.3 1 0 0 1 1 1 1 HTH domain HTH_28 PF13518.1 gi|529078272|ref|YP_008377275.1| - 0.00046 20.1 0.0 0.00085 19.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|529078272|ref|YP_008377275.1| - 0.00062 19.8 0.1 0.00084 19.4 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_34 PF13601.1 gi|529078272|ref|YP_008377275.1| - 0.001 19.0 0.0 0.0015 18.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF4423 PF14394.1 gi|529078272|ref|YP_008377275.1| - 0.0012 18.4 0.0 0.0013 18.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) Penicillinase_R PF03965.11 gi|529078272|ref|YP_008377275.1| - 0.0029 17.6 0.2 0.0032 17.5 0.1 1.1 1 0 0 1 1 1 1 Penicillinase repressor HTH_29 PF13551.1 gi|529078272|ref|YP_008377275.1| - 0.0037 17.3 0.1 0.0048 17.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_26 PF13443.1 gi|529078272|ref|YP_008377275.1| - 0.0048 17.0 0.2 0.012 15.7 0.0 1.8 2 0 0 2 2 1 1 Cro/C1-type HTH DNA-binding domain Arg_repressor PF01316.16 gi|529078272|ref|YP_008377275.1| - 0.0057 16.1 0.1 0.0095 15.4 0.1 1.5 1 0 0 1 1 1 1 Arginine repressor, DNA binding domain DUF977 PF06163.6 gi|529078272|ref|YP_008377275.1| - 0.0067 16.1 0.0 0.0082 15.8 0.0 1.2 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF977) HTH_43 PF09904.4 gi|529078272|ref|YP_008377275.1| - 0.01 15.6 0.0 0.013 15.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn helix HTH_Crp_2 PF13545.1 gi|529078272|ref|YP_008377275.1| - 0.011 15.4 0.0 0.021 14.6 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain RP-C PF03428.8 gi|529078272|ref|YP_008377275.1| - 0.012 15.0 0.0 0.018 14.4 0.0 1.3 1 0 0 1 1 1 0 Replication protein C N-terminal domain HTH_DeoR PF08220.7 gi|529078272|ref|YP_008377275.1| - 0.014 14.8 0.5 0.024 14.1 0.1 1.5 2 0 0 2 2 1 0 DeoR-like helix-turn-helix domain Cullin PF00888.17 gi|529078272|ref|YP_008377275.1| - 0.015 13.8 0.0 0.016 13.7 0.0 1.1 1 0 0 1 1 1 0 Cullin family DUF2250 PF10007.4 gi|529078272|ref|YP_008377275.1| - 0.021 14.7 1.1 0.077 12.9 0.8 1.8 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) DUF3489 PF11994.3 gi|529078272|ref|YP_008377275.1| - 0.027 14.4 0.0 0.033 14.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3489) Sulfolobus_pRN PF05584.6 gi|529078272|ref|YP_008377275.1| - 0.027 14.4 0.0 0.045 13.7 0.0 1.3 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein Mga PF05043.8 gi|529078272|ref|YP_008377275.1| - 0.028 14.6 0.0 0.042 14.1 0.0 1.2 1 0 0 1 1 1 0 Mga helix-turn-helix domain Fe_dep_repress PF01325.14 gi|529078272|ref|YP_008377275.1| - 0.035 14.0 0.0 0.07 13.0 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain FUR PF01475.14 gi|529078272|ref|YP_008377275.1| - 0.038 13.9 0.0 0.096 12.6 0.0 1.7 1 1 0 1 1 1 0 Ferric uptake regulator family HTH_3 PF01381.17 gi|529078272|ref|YP_008377275.1| - 0.066 13.0 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix S10_plectin PF03501.10 gi|529078272|ref|YP_008377275.1| - 0.068 13.0 0.0 0.087 12.6 0.0 1.2 1 0 0 1 1 1 0 Plectin/S10 domain HTH_psq PF05225.11 gi|529078272|ref|YP_008377275.1| - 0.084 12.4 0.0 0.27 10.8 0.0 1.7 2 0 0 2 2 2 0 helix-turn-helix, Psq domain PaaX PF07848.7 gi|529078272|ref|YP_008377275.1| - 0.089 12.8 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 PaaX-like protein DUF2513 PF10711.4 gi|529078272|ref|YP_008377275.1| - 0.12 12.4 0.3 0.64 10.1 0.0 1.9 1 1 1 2 2 2 0 Hypothetical protein (DUF2513) MerR_1 PF13411.1 gi|529078272|ref|YP_008377275.1| - 0.13 12.0 0.0 0.23 11.2 0.0 1.5 1 0 0 1 1 1 0 MerR HTH family regulatory protein OrfB_IS605 PF01385.14 gi|529078274|ref|YP_008377277.1| - 5.9e-27 94.5 1.6 5.9e-27 94.5 1.1 1.7 1 1 1 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|529078274|ref|YP_008377277.1| - 9.8e-19 66.7 0.7 1.9e-18 65.8 0.5 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|529078274|ref|YP_008377277.1| - 1.5e-06 27.4 0.1 3.1e-06 26.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain OAF PF14941.1 gi|529078274|ref|YP_008377277.1| - 0.01 15.0 0.2 0.016 14.3 0.1 1.2 1 0 0 1 1 1 0 Transcriptional regulator, Out at first IncFII_repA PF02387.10 gi|529078274|ref|YP_008377277.1| - 0.03 13.4 2.2 0.046 12.8 1.1 1.6 2 0 0 2 2 2 0 IncFII RepA protein family Zn_Tnp_IS91 PF14319.1 gi|529078274|ref|YP_008377277.1| - 0.13 11.7 2.6 0.37 10.3 1.8 1.8 1 0 0 1 1 1 0 Transposase zinc-binding domain MFS_1 PF07690.11 gi|529078275|ref|YP_008377278.1| - 1e-39 136.2 35.5 1e-39 136.2 24.6 1.7 1 1 1 2 2 2 2 Major Facilitator Superfamily OATP PF03137.15 gi|529078275|ref|YP_008377278.1| - 0.073 11.1 0.0 0.11 10.5 0.0 1.3 1 0 0 1 1 1 0 Organic Anion Transporter Polypeptide (OATP) family DDE_Tnp_IS66 PF03050.9 gi|529078277|ref|YP_008377280.1| - 1e-52 179.0 0.0 1e-52 179.0 0.0 1.6 2 0 0 2 2 2 1 Transposase IS66 family GAS PF13851.1 gi|529078277|ref|YP_008377280.1| - 0.0051 16.0 3.9 0.009 15.2 2.7 1.3 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding Transposase_mut PF00872.13 gi|529078277|ref|YP_008377280.1| - 0.006 15.1 0.0 0.012 14.2 0.0 1.4 1 0 0 1 1 1 1 Transposase, Mutator family TMF_TATA_bd PF12325.3 gi|529078277|ref|YP_008377280.1| - 0.0062 16.2 9.2 0.016 14.9 6.4 1.6 1 0 0 1 1 1 1 TATA element modulatory factor 1 TATA binding bZIP_1 PF00170.16 gi|529078277|ref|YP_008377280.1| - 0.0072 16.2 4.8 0.018 15.0 3.3 1.7 1 0 0 1 1 1 1 bZIP transcription factor CENP-F_leu_zip PF10473.4 gi|529078277|ref|YP_008377280.1| - 0.017 14.9 7.3 0.047 13.5 5.0 1.7 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Shugoshin_N PF07558.6 gi|529078277|ref|YP_008377280.1| - 0.021 14.5 1.3 0.048 13.3 0.9 1.6 1 0 0 1 1 1 0 Shugoshin N-terminal coiled-coil region DASH_Spc34 PF08657.5 gi|529078277|ref|YP_008377280.1| - 0.027 14.1 3.6 0.056 13.0 2.5 1.4 1 0 0 1 1 1 0 DASH complex subunit Spc34 IncA PF04156.9 gi|529078277|ref|YP_008377280.1| - 0.038 13.5 3.7 0.087 12.4 2.6 1.5 1 0 0 1 1 1 0 IncA protein SOUL PF04832.7 gi|529078277|ref|YP_008377280.1| - 0.055 13.0 0.2 0.1 12.1 0.1 1.4 1 0 0 1 1 1 0 SOUL heme-binding protein TBPIP PF07106.8 gi|529078277|ref|YP_008377280.1| - 0.059 12.9 1.9 0.14 11.6 1.3 1.6 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) CBF_beta PF02312.12 gi|529078277|ref|YP_008377280.1| - 0.073 12.6 2.5 0.13 11.8 1.7 1.3 1 0 0 1 1 1 0 Core binding factor beta subunit DUF869 PF05911.6 gi|529078277|ref|YP_008377280.1| - 0.079 11.1 2.8 0.11 10.7 1.9 1.1 1 0 0 1 1 1 0 Plant protein of unknown function (DUF869) MCC-bdg_PDZ PF10506.4 gi|529078277|ref|YP_008377280.1| - 0.081 12.7 3.9 0.19 11.5 2.7 1.7 1 0 0 1 1 1 0 PDZ domain of MCC-2 bdg protein for Usher syndrome DUF2681 PF10883.3 gi|529078277|ref|YP_008377280.1| - 0.11 12.7 1.3 0.34 11.1 0.9 1.8 2 0 0 2 2 1 0 Protein of unknown function (DUF2681) DUF972 PF06156.8 gi|529078277|ref|YP_008377280.1| - 0.12 12.7 3.8 0.11 12.8 1.4 1.7 2 0 0 2 2 1 0 Protein of unknown function (DUF972) DUF3584 PF12128.3 gi|529078277|ref|YP_008377280.1| - 0.17 9.1 3.3 0.24 8.6 2.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) CtIP_N PF10482.4 gi|529078277|ref|YP_008377280.1| - 0.24 11.2 8.5 0.17 11.6 4.2 2.0 2 0 0 2 2 2 0 Tumour-suppressor protein CtIP N-terminal domain V_ATPase_I PF01496.14 gi|529078277|ref|YP_008377280.1| - 0.34 8.6 2.5 0.48 8.2 1.8 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family UPF0547 PF10571.4 gi|529078277|ref|YP_008377280.1| - 0.36 10.5 2.8 0.57 9.9 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Daxx PF03344.10 gi|529078277|ref|YP_008377280.1| - 0.37 9.2 7.2 0.57 8.6 5.0 1.1 1 0 0 1 1 1 0 Daxx Family TMF_DNA_bd PF12329.3 gi|529078277|ref|YP_008377280.1| - 0.53 10.1 8.2 0.24 11.2 2.0 2.2 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding DivIC PF04977.10 gi|529078277|ref|YP_008377280.1| - 0.58 9.6 7.7 0.15 11.5 2.4 2.2 2 0 0 2 2 2 0 Septum formation initiator DDE_Tnp_IS240 PF13610.1 gi|529078277|ref|YP_008377280.1| - 0.59 10.0 2.8 0.44 10.4 0.1 2.2 2 1 0 2 2 2 0 DDE domain APG6 PF04111.7 gi|529078277|ref|YP_008377280.1| - 1.4 7.9 4.5 2.3 7.1 3.1 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 zf-IS66 PF13005.2 gi|529078277|ref|YP_008377280.1| - 4.8 7.2 13.2 0.093 12.7 3.8 2.2 2 0 0 2 2 1 0 zinc-finger binding domain of transposase IS66 bZIP_2 PF07716.10 gi|529078277|ref|YP_008377280.1| - 5.4 6.9 12.9 0.33 10.8 4.6 2.3 2 1 1 3 3 2 0 Basic region leucine zipper HTH_10 PF04967.7 gi|529078278|ref|YP_008377281.1| - 1.2e-16 59.9 0.0 1.7e-16 59.4 0.0 1.2 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|529078278|ref|YP_008377281.1| - 3.7e-06 26.1 0.1 8.2e-06 25.0 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|529078278|ref|YP_008377281.1| - 0.00013 21.6 0.4 0.00031 20.3 0.3 1.7 1 1 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.1 gi|529078278|ref|YP_008377281.1| - 0.00039 19.8 0.8 0.00081 18.8 0.6 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|529078278|ref|YP_008377281.1| - 0.00053 19.3 0.1 0.0012 18.2 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|529078278|ref|YP_008377281.1| - 0.015 15.0 0.0 0.028 14.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain UPF0122 PF04297.9 gi|529078278|ref|YP_008377281.1| - 0.074 13.0 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like Sigma70_r4_2 PF08281.7 gi|529078278|ref|YP_008377281.1| - 0.13 11.7 0.1 0.29 10.6 0.1 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 MGS PF02142.17 gi|529078280|ref|YP_008377283.1| - 1.3e-15 57.1 0.0 1.5e-15 56.8 0.0 1.1 1 0 0 1 1 1 1 MGS-like domain DUF3240 PF11582.3 gi|529078280|ref|YP_008377283.1| - 0.046 13.6 0.0 0.068 13.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3240) DUF457 PF04307.9 gi|529078281|ref|YP_008377284.1| - 3.4e-16 58.9 8.5 4.6e-16 58.5 5.9 1.2 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) CcmB PF03379.8 gi|529078281|ref|YP_008377284.1| - 0.021 14.0 0.3 0.035 13.3 0.2 1.4 1 0 0 1 1 1 0 CcmB protein Glyoxalase PF00903.20 gi|529078283|ref|YP_008377286.1| - 1e-13 51.3 0.0 2.8e-10 40.2 0.0 2.4 2 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|529078283|ref|YP_008377286.1| - 4.2e-13 49.8 0.4 1.7e-09 38.2 0.0 2.4 2 1 0 2 2 2 2 Glyoxalase-like domain DUF457 PF04307.9 gi|529078284|ref|YP_008377287.1| - 2.8e-10 39.7 11.2 5.5e-10 38.7 7.8 1.5 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF4184 PF13803.1 gi|529078284|ref|YP_008377287.1| - 0.72 9.1 4.0 0.16 11.2 0.7 1.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4184) PAP2 PF01569.16 gi|529078284|ref|YP_008377287.1| - 0.82 9.3 6.3 0.63 9.7 0.9 2.3 1 1 1 2 2 2 0 PAP2 superfamily YqhR PF11085.3 gi|529078285|ref|YP_008377288.1| - 6.1 6.3 8.9 1.9 7.9 3.7 1.9 1 1 1 2 2 2 0 Conserved membrane protein YqhR Amino_oxidase PF01593.19 gi|529078288|ref|YP_008377291.1| - 1.6e-17 63.7 0.0 9.2e-09 34.8 0.0 2.1 1 1 0 2 2 2 2 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|529078288|ref|YP_008377291.1| - 9.7e-13 47.9 0.0 2.4e-12 46.6 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|529078288|ref|YP_008377291.1| - 8.3e-11 41.3 0.6 3.2e-05 22.9 0.0 2.3 2 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|529078288|ref|YP_008377291.1| - 1.1e-05 25.5 0.0 0.0049 16.9 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|529078288|ref|YP_008377291.1| - 0.00021 21.0 0.0 0.047 13.4 0.0 2.3 2 0 0 2 2 2 1 FAD-NAD(P)-binding Thi4 PF01946.12 gi|529078288|ref|YP_008377291.1| - 0.0003 19.9 0.2 0.00055 19.0 0.1 1.4 1 0 0 1 1 1 1 Thi4 family FAD_binding_3 PF01494.14 gi|529078288|ref|YP_008377291.1| - 0.00052 19.1 0.3 0.00079 18.5 0.2 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|529078288|ref|YP_008377291.1| - 0.0019 18.0 0.0 0.0032 17.3 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|529078288|ref|YP_008377291.1| - 0.0055 17.0 0.2 0.021 15.2 0.1 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|529078288|ref|YP_008377291.1| - 0.011 14.1 0.1 0.06 11.8 0.1 1.8 2 0 0 2 2 2 0 HI0933-like protein 3HCDH_N PF02737.13 gi|529078288|ref|YP_008377291.1| - 0.012 15.2 0.0 0.018 14.6 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_2 PF00890.19 gi|529078288|ref|YP_008377291.1| - 0.012 14.4 0.2 0.021 13.7 0.2 1.3 1 0 0 1 1 1 0 FAD binding domain FMO-like PF00743.14 gi|529078288|ref|YP_008377291.1| - 0.039 12.1 0.0 0.052 11.7 0.0 1.1 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like UDPG_MGDP_dh_N PF03721.9 gi|529078288|ref|YP_008377291.1| - 0.17 11.2 0.0 0.27 10.5 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Metallophos_2 PF12850.2 gi|529078289|ref|YP_008377292.1| - 2.1e-31 108.8 0.0 2.6e-31 108.5 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|529078289|ref|YP_008377292.1| - 1.2e-09 37.9 0.1 1.9e-09 37.2 0.1 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase RNA_binding PF01877.12 gi|529078290|ref|YP_008377293.1| - 9.3e-24 83.7 0.1 1.4e-23 83.1 0.0 1.3 1 0 0 1 1 1 1 RNA binding AAA_18 PF13238.1 gi|529078291|ref|YP_008377294.1| - 1.3e-11 44.9 0.0 1.8e-11 44.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|529078291|ref|YP_008377294.1| - 1.3e-10 42.0 0.0 1.8e-10 41.6 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|529078291|ref|YP_008377294.1| - 2.1e-08 34.1 0.0 3.5e-08 33.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain PEP-utilizers PF00391.18 gi|529078291|ref|YP_008377294.1| - 0.008 15.7 1.3 0.083 12.4 0.9 2.2 1 1 0 1 1 1 1 PEP-utilising enzyme, mobile domain AAA_30 PF13604.1 gi|529078291|ref|YP_008377294.1| - 0.018 14.5 0.2 0.042 13.4 0.1 1.5 1 1 0 1 1 1 0 AAA domain RBD PF02196.10 gi|529078291|ref|YP_008377294.1| - 0.036 13.8 0.0 0.069 12.9 0.0 1.5 1 0 0 1 1 1 0 Raf-like Ras-binding domain ADK PF00406.17 gi|529078291|ref|YP_008377294.1| - 0.059 13.2 0.0 0.073 12.9 0.0 1.3 1 1 0 1 1 1 0 Adenylate kinase Zeta_toxin PF06414.7 gi|529078291|ref|YP_008377294.1| - 0.1 11.6 0.9 0.39 9.7 0.6 1.9 1 1 0 1 1 1 0 Zeta toxin zf-CSL PF05207.8 gi|529078292|ref|YP_008377295.1| - 0.00016 21.0 0.1 0.00016 21.0 0.1 1.0 1 0 0 1 1 1 1 CSL zinc finger zf-C2H2 PF00096.21 gi|529078292|ref|YP_008377295.1| - 0.021 15.1 0.0 0.035 14.4 0.0 1.4 1 1 0 1 1 1 0 Zinc finger, C2H2 type zf-C2H2_6 PF13912.1 gi|529078292|ref|YP_008377295.1| - 0.093 12.6 0.3 0.23 11.4 0.2 1.7 1 1 0 1 1 1 0 C2H2-type zinc finger FecCD PF01032.13 gi|529078293|ref|YP_008377296.1| - 0.023 13.5 0.0 0.024 13.4 0.0 1.0 1 0 0 1 1 1 0 FecCD transport family PhoU_div PF01865.11 gi|529078294|ref|YP_008377297.1| - 6.2e-18 64.7 2.7 2.8e-17 62.6 1.9 1.8 1 1 0 1 1 1 1 Protein of unknown function DUF47 GAT PF03127.9 gi|529078294|ref|YP_008377297.1| - 8.1e-05 22.5 1.3 0.17 11.8 0.0 2.6 2 1 0 2 2 2 2 GAT domain DUF2877 PF11392.3 gi|529078294|ref|YP_008377297.1| - 0.0042 17.2 0.1 0.016 15.4 0.0 2.0 2 1 1 3 3 3 1 Protein of unknown function (DUF2877) PhoU PF01895.14 gi|529078294|ref|YP_008377297.1| - 3.3 8.2 11.1 16 5.9 3.4 3.0 2 2 0 2 2 2 0 PhoU domain Rhodanese PF00581.15 gi|529078295|ref|YP_008377298.1| - 3.4e-36 124.0 0.4 1.7e-18 67.0 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain Rhodanese PF00581.15 gi|529078296|ref|YP_008377299.1| - 4.7e-39 133.2 0.0 1.5e-21 76.8 0.0 2.0 2 0 0 2 2 2 2 Rhodanese-like domain UPF0118 PF01594.11 gi|529078297|ref|YP_008377300.1| - 3.9e-23 81.9 32.7 2e-22 79.5 22.7 1.8 1 1 0 1 1 1 1 Domain of unknown function DUF20 DUF2208 PF09973.4 gi|529078297|ref|YP_008377300.1| - 0.33 10.1 2.9 0.26 10.4 0.5 1.8 1 1 1 2 2 2 0 Predicted membrane protein (DUF2208) 2Fe-2S_thioredx PF01257.14 gi|529078298|ref|YP_008377301.1| - 1.4e-47 160.9 0.1 1.7e-47 160.6 0.1 1.0 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin DUF1636 PF07845.6 gi|529078298|ref|YP_008377301.1| - 0.002 18.3 0.4 0.0038 17.4 0.2 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1636) Complex1_51K PF01512.12 gi|529078299|ref|YP_008377302.1| - 7.6e-52 175.0 0.0 2.1e-51 173.5 0.0 1.7 2 0 0 2 2 2 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit NADH_4Fe-4S PF10589.4 gi|529078299|ref|YP_008377302.1| - 1.4e-16 59.3 2.6 2.4e-16 58.5 0.0 2.6 2 0 0 2 2 2 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Fer4 PF00037.22 gi|529078299|ref|YP_008377302.1| - 8.7e-14 50.4 27.5 2.9e-08 32.9 4.2 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|529078299|ref|YP_008377302.1| - 1.3e-10 41.3 29.3 1.7e-08 34.5 10.6 3.3 3 1 1 4 4 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|529078299|ref|YP_008377302.1| - 2.7e-10 39.8 13.3 2.7e-10 39.8 9.2 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|529078299|ref|YP_008377302.1| - 5e-10 39.5 14.4 5e-10 39.5 10.0 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|529078299|ref|YP_008377302.1| - 7e-10 38.6 27.4 2.2e-08 33.8 9.7 2.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain SLBB PF10531.4 gi|529078299|ref|YP_008377302.1| - 7.6e-10 38.5 3.2 2.3e-09 37.0 2.2 1.9 1 0 0 1 1 1 1 SLBB domain Fer4_2 PF12797.2 gi|529078299|ref|YP_008377302.1| - 3.6e-09 36.0 24.4 6.3e-06 25.7 3.2 4.2 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|529078299|ref|YP_008377302.1| - 4.5e-07 29.4 25.6 1.4e-05 24.7 3.4 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|529078299|ref|YP_008377302.1| - 5.7e-05 23.7 18.5 0.0031 18.2 1.5 3.2 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|529078299|ref|YP_008377302.1| - 7.3e-05 22.7 25.8 0.0031 17.7 2.9 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|529078299|ref|YP_008377302.1| - 7.7e-05 22.6 21.1 0.00038 20.4 9.8 3.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|529078299|ref|YP_008377302.1| - 0.00019 21.9 15.8 0.0035 17.8 1.7 3.8 3 0 0 3 3 3 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|529078299|ref|YP_008377302.1| - 0.00039 20.7 20.5 0.0051 17.1 1.9 2.9 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|529078299|ref|YP_008377302.1| - 0.0014 19.0 20.5 0.002 18.5 4.5 3.8 4 0 0 4 4 2 2 4Fe-4S binding domain 2Fe-2S_thioredx PF01257.14 gi|529078299|ref|YP_008377302.1| - 0.0025 17.4 0.0 0.006 16.1 0.0 1.6 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin Fer4_11 PF13247.1 gi|529078299|ref|YP_008377302.1| - 0.0071 16.2 5.2 0.0071 16.2 3.6 1.9 2 0 0 2 2 1 1 4Fe-4S dicluster domain DUF1636 PF07845.6 gi|529078299|ref|YP_008377302.1| - 0.0071 16.5 0.0 0.017 15.3 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1636) Fer4_17 PF13534.1 gi|529078299|ref|YP_008377302.1| - 0.0097 16.2 20.8 1.1 9.6 3.6 3.5 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer2_4 PF13510.1 gi|529078300|ref|YP_008377303.1| - 3.2e-22 78.1 1.6 3.2e-22 78.1 1.1 2.9 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Molybdopterin PF00384.17 gi|529078300|ref|YP_008377303.1| - 4.9e-10 38.7 0.2 4.1e-08 32.3 0.0 2.1 2 0 0 2 2 2 1 Molybdopterin oxidoreductase NADH-G_4Fe-4S_3 PF10588.4 gi|529078300|ref|YP_008377303.1| - 6.9e-10 37.9 0.5 6.9e-10 37.9 0.4 2.1 2 0 0 2 2 1 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Fer4_8 PF13183.1 gi|529078300|ref|YP_008377303.1| - 1.1e-09 38.2 6.2 1.1e-09 38.2 4.3 3.3 3 1 0 3 3 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|529078300|ref|YP_008377303.1| - 1.8e-09 36.8 17.4 2.8e-06 26.6 1.1 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|529078300|ref|YP_008377303.1| - 6.2e-09 35.9 8.5 6.2e-09 35.9 5.9 3.2 2 2 1 3 3 2 2 4Fe-4S dicluster domain Molybdop_Fe4S4 PF04879.11 gi|529078300|ref|YP_008377303.1| - 2.4e-07 30.4 0.8 2.4e-07 30.4 0.5 2.5 3 0 0 3 3 1 1 Molybdopterin oxidoreductase Fe4S4 domain Fer4_21 PF14697.1 gi|529078300|ref|YP_008377303.1| - 1.2e-06 28.2 7.4 1.2e-06 28.2 5.1 2.8 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|529078300|ref|YP_008377303.1| - 1.9e-06 27.4 11.6 0.00021 21.0 1.7 3.9 5 0 0 5 5 3 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|529078300|ref|YP_008377303.1| - 2.1e-06 27.3 13.7 0.0002 21.0 1.7 4.0 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|529078300|ref|YP_008377303.1| - 2.6e-06 27.1 25.2 0.00083 19.1 0.3 3.5 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|529078300|ref|YP_008377303.1| - 1.2e-05 25.5 30.2 0.0002 21.6 6.9 3.5 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|529078300|ref|YP_008377303.1| - 0.00075 20.0 0.9 0.00075 20.0 0.7 5.1 6 1 0 6 6 4 2 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|529078300|ref|YP_008377303.1| - 0.0045 17.2 14.4 0.0089 16.2 1.5 4.4 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|529078300|ref|YP_008377303.1| - 0.0068 16.8 2.0 0.0068 16.8 1.4 3.5 2 1 1 3 3 2 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|529078300|ref|YP_008377303.1| - 0.018 15.5 6.5 0.018 15.5 4.5 3.9 4 0 0 4 4 3 0 4Fe-4S binding domain TGS PF02824.16 gi|529078300|ref|YP_008377303.1| - 0.024 14.4 0.0 0.35 10.7 0.0 2.7 3 0 0 3 3 2 0 TGS domain Fer4_13 PF13370.1 gi|529078300|ref|YP_008377303.1| - 0.23 11.8 19.3 0.26 11.6 0.9 3.6 3 0 0 3 3 2 0 4Fe-4S single cluster domain DUF348 PF03990.9 gi|529078300|ref|YP_008377303.1| - 3.2 7.4 13.8 4.2 7.0 0.1 5.2 6 1 1 7 7 7 0 Domain of unknown function (DUF348) Fer4_17 PF13534.1 gi|529078300|ref|YP_008377303.1| - 6.5 7.1 31.1 0.033 14.5 8.6 3.8 1 1 3 4 4 3 0 4Fe-4S dicluster domain Fer2_3 PF13085.1 gi|529078300|ref|YP_008377303.1| - 8.7 6.2 8.1 0.16 11.8 0.3 2.0 2 0 0 2 2 1 0 2Fe-2S iron-sulfur cluster binding domain NiFeSe_Hases PF00374.14 gi|529078301|ref|YP_008377304.1| - 1.4e-39 136.3 0.0 3.9e-18 65.5 0.0 3.0 3 0 0 3 3 3 3 Nickel-dependent hydrogenase HycI PF01750.13 gi|529078302|ref|YP_008377305.1| - 1.7e-10 40.5 0.0 2.1e-10 40.2 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase maturation protease DUF2061 PF09834.4 gi|529078305|ref|YP_008377308.1| - 3.5e-16 59.1 2.7 4e-16 58.9 1.9 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2061) DUF420 PF04238.7 gi|529078305|ref|YP_008377308.1| - 0.083 12.8 0.2 0.095 12.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF420) HrcA_DNA-bdg PF03444.10 gi|529078306|ref|YP_008377309.1| - 3.6e-26 90.4 0.0 5.6e-26 89.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.15 gi|529078306|ref|YP_008377309.1| - 7.4e-08 32.4 0.0 2.4e-07 30.7 0.0 1.8 2 0 0 2 2 2 1 Transcriptional regulator HTH_11 PF08279.7 gi|529078306|ref|YP_008377309.1| - 1.6e-05 24.4 0.0 2.4e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|529078306|ref|YP_008377309.1| - 0.003 17.2 0.0 0.0061 16.2 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.14 gi|529078306|ref|YP_008377309.1| - 0.0085 16.0 0.1 0.02 14.8 0.0 1.7 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.2 gi|529078306|ref|YP_008377309.1| - 0.012 15.2 0.0 0.037 13.6 0.0 1.9 2 0 0 2 2 2 0 MarR family HTH_24 PF13412.1 gi|529078306|ref|YP_008377309.1| - 0.018 14.3 0.0 0.036 13.4 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|529078306|ref|YP_008377309.1| - 0.049 13.4 0.0 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.1 gi|529078306|ref|YP_008377309.1| - 0.085 13.1 0.0 0.16 12.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Epimerase PF01370.16 gi|529078307|ref|YP_008377310.1| - 3.5e-21 75.7 2.2 1.2e-15 57.6 0.0 2.5 2 1 1 3 3 3 2 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|529078307|ref|YP_008377310.1| - 9.6e-17 61.5 0.1 2e-16 60.5 0.0 1.5 1 0 0 1 1 1 1 NADH(P)-binding RmlD_sub_bind PF04321.12 gi|529078307|ref|YP_008377310.1| - 3.4e-12 45.8 0.7 4.1e-11 42.2 0.5 2.1 1 1 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|529078307|ref|YP_008377310.1| - 4.8e-07 28.7 0.1 2.9e-05 22.9 0.1 2.1 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NmrA PF05368.8 gi|529078307|ref|YP_008377310.1| - 0.00053 19.3 0.2 0.0013 18.0 0.2 1.9 1 1 0 1 1 1 1 NmrA-like family NAD_binding_4 PF07993.7 gi|529078307|ref|YP_008377310.1| - 0.00076 18.4 0.1 0.0031 16.4 0.0 1.9 1 1 1 2 2 2 1 Male sterility protein adh_short PF00106.20 gi|529078307|ref|YP_008377310.1| - 0.13 12.2 0.1 0.29 11.0 0.1 1.5 1 0 0 1 1 1 0 short chain dehydrogenase GST_N_3 PF13417.1 gi|529078308|ref|YP_008377311.1| - 3.9e-14 52.6 0.0 4.4e-14 52.4 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.19 gi|529078308|ref|YP_008377311.1| - 2.4e-11 43.4 0.0 3.7e-11 42.8 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.1 gi|529078308|ref|YP_008377311.1| - 4e-10 39.5 0.0 4.8e-10 39.2 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.9 gi|529078308|ref|YP_008377311.1| - 0.015 15.5 0.1 0.018 15.2 0.0 1.3 1 1 0 1 1 1 0 Glutaredoxin-like domain (DUF836) GST_N PF02798.15 gi|529078308|ref|YP_008377311.1| - 0.039 14.1 0.0 0.049 13.8 0.0 1.2 1 1 0 1 1 1 0 Glutathione S-transferase, N-terminal domain AhpC-TSA PF00578.16 gi|529078309|ref|YP_008377312.1| - 2.9e-20 72.1 0.0 3.5e-20 71.9 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|529078309|ref|YP_008377312.1| - 5.6e-09 35.6 0.0 9.1e-09 35.0 0.0 1.3 1 1 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|529078309|ref|YP_008377312.1| - 0.012 15.5 0.0 1.1 9.2 0.0 2.1 1 1 1 2 2 2 0 AhpC/TSA antioxidant enzyme Cys_rich_CPXG PF14255.1 gi|529078310|ref|YP_008377313.1| - 0.02 14.7 0.5 0.045 13.5 0.1 1.8 2 0 0 2 2 2 0 Cysteine-rich CPXCG zf-Di19 PF05605.7 gi|529078310|ref|YP_008377313.1| - 0.039 14.0 0.1 0.069 13.2 0.1 1.4 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding zf-RING-like PF08746.6 gi|529078310|ref|YP_008377313.1| - 0.081 12.9 0.8 0.2 11.7 0.6 1.6 1 1 0 1 1 1 0 RING-like domain Churchill PF06573.6 gi|529078310|ref|YP_008377313.1| - 0.11 12.4 0.5 0.13 12.3 0.3 1.0 1 0 0 1 1 1 0 Churchill protein Zn-ribbon_8 PF09723.5 gi|529078310|ref|YP_008377313.1| - 0.19 11.6 0.1 0.19 11.6 0.1 1.9 2 1 0 2 2 2 0 Zinc ribbon domain FANCL_C PF11793.3 gi|529078310|ref|YP_008377313.1| - 0.48 10.4 3.3 5.2 7.1 2.3 2.0 1 1 0 1 1 1 0 FANCL C-terminal domain Thioredoxin_3 PF13192.1 gi|529078311|ref|YP_008377314.1| - 3e-19 68.5 0.6 1.6e-13 50.2 0.0 2.8 2 1 0 2 2 2 2 Thioredoxin domain Glutaredoxin PF00462.19 gi|529078311|ref|YP_008377314.1| - 6.7e-13 48.4 0.0 7.5e-09 35.4 0.0 2.6 2 0 0 2 2 2 2 Glutaredoxin Thioredoxin_2 PF13098.1 gi|529078311|ref|YP_008377314.1| - 4.8e-10 39.6 2.6 0.00028 21.0 1.5 3.2 2 1 0 2 2 2 2 Thioredoxin-like domain Thioredoxin_9 PF14595.1 gi|529078311|ref|YP_008377314.1| - 4.2e-09 36.0 0.0 0.00081 18.9 0.0 2.2 2 0 0 2 2 2 2 Thioredoxin Thioredoxin PF00085.15 gi|529078311|ref|YP_008377314.1| - 4.1e-05 23.1 0.1 0.00015 21.3 0.0 1.8 2 0 0 2 2 2 1 Thioredoxin ABC_transp_aux PF09822.4 gi|529078311|ref|YP_008377314.1| - 7.4e-05 22.3 0.0 0.075 12.4 0.0 2.1 2 0 0 2 2 2 2 ABC-type uncharacterized transport system DUF836 PF05768.9 gi|529078311|ref|YP_008377314.1| - 0.00032 20.9 0.0 0.4 10.9 0.0 2.4 2 0 0 2 2 2 2 Glutaredoxin-like domain (DUF836) Thioredoxin_4 PF13462.1 gi|529078311|ref|YP_008377314.1| - 0.0011 18.9 3.0 1.3 9.0 0.4 3.1 2 1 1 3 3 3 2 Thioredoxin DSBA PF01323.15 gi|529078311|ref|YP_008377314.1| - 0.017 14.6 0.6 0.032 13.8 0.1 1.7 1 1 0 1 1 1 0 DSBA-like thioredoxin domain Glyco_hydro_2_C PF02836.12 gi|529078312|ref|YP_008377315.1| - 3.3e-34 118.1 0.0 5.7e-34 117.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, TIM barrel domain Glyco_hydro_2_N PF02837.13 gi|529078312|ref|YP_008377315.1| - 4.8e-28 97.8 0.0 8e-28 97.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, sugar binding domain Glyco_hydro_2 PF00703.16 gi|529078312|ref|YP_008377315.1| - 5.4e-14 52.5 0.6 1.7e-13 50.9 0.0 2.1 2 0 0 2 2 2 1 Glycosyl hydrolases family 2 Big_1 PF02369.11 gi|529078312|ref|YP_008377315.1| - 0.28 11.1 1.9 0.81 9.6 0.1 2.6 2 1 0 2 2 2 0 Bacterial Ig-like domain (group 1) DUF4491 PF14898.1 gi|529078313|ref|YP_008377316.1| - 3.1 7.9 6.5 9.7 6.4 3.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4491) DUF1700 PF08006.6 gi|529078313|ref|YP_008377316.1| - 5.9 6.1 6.8 7.2 5.8 4.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1700) Herpes_LMP1 PF05297.6 gi|529078313|ref|YP_008377316.1| - 8.4 5.1 7.8 10 4.9 5.4 1.0 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) Cpn60_TCP1 PF00118.19 gi|529078314|ref|YP_008377317.1| - 1.9e-144 481.8 0.1 2.3e-144 481.6 0.1 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family ABC_tran PF00005.22 gi|529078315|ref|YP_008377318.1| - 1.9e-26 92.9 0.0 2.7e-26 92.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|529078315|ref|YP_008377318.1| - 5.4e-13 49.0 0.5 1.1e-12 48.1 0.4 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|529078315|ref|YP_008377318.1| - 2.4e-09 37.5 0.0 1.8e-06 28.1 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|529078315|ref|YP_008377318.1| - 2.5e-05 24.4 0.7 0.00026 21.1 0.5 2.2 1 1 0 1 1 1 1 AAA domain NB-ARC PF00931.17 gi|529078315|ref|YP_008377318.1| - 0.002 17.0 0.0 0.0026 16.6 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain AAA_29 PF13555.1 gi|529078315|ref|YP_008377318.1| - 0.021 14.3 0.0 0.035 13.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|529078315|ref|YP_008377318.1| - 0.035 14.4 0.0 0.065 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|529078315|ref|YP_008377318.1| - 0.041 13.8 0.2 0.065 13.2 0.2 1.5 1 1 0 1 1 1 0 AAA ATPase domain DUF258 PF03193.11 gi|529078315|ref|YP_008377318.1| - 0.061 12.5 1.4 0.088 11.9 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_30 PF13604.1 gi|529078315|ref|YP_008377318.1| - 0.1 12.1 0.0 0.27 10.7 0.0 1.6 2 0 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|529078315|ref|YP_008377318.1| - 0.12 12.0 0.0 0.22 11.1 0.0 1.5 1 0 0 1 1 1 0 Archaeal ATPase PduV-EutP PF10662.4 gi|529078315|ref|YP_008377318.1| - 0.15 11.5 0.0 0.25 10.8 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation ABC_tran PF00005.22 gi|529078316|ref|YP_008377319.1| - 9.6e-21 74.5 0.0 1.7e-20 73.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|529078316|ref|YP_008377319.1| - 4.5e-19 68.5 0.1 8.2e-19 67.7 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|529078316|ref|YP_008377319.1| - 4.5e-09 36.6 2.8 1.2e-07 32.0 1.9 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|529078316|ref|YP_008377319.1| - 9.2e-06 25.0 0.1 0.0043 16.3 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|529078316|ref|YP_008377319.1| - 0.00076 18.9 0.0 0.026 13.9 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|529078316|ref|YP_008377319.1| - 0.003 17.7 0.6 0.079 13.1 0.4 2.2 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|529078316|ref|YP_008377319.1| - 0.0034 16.8 0.0 0.016 14.6 0.0 1.8 1 1 0 2 2 2 1 AAA-like domain AAA_16 PF13191.1 gi|529078316|ref|YP_008377319.1| - 0.0036 17.3 0.0 0.0052 16.7 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.1 gi|529078316|ref|YP_008377319.1| - 0.0055 15.7 0.1 0.14 11.1 0.1 2.0 2 0 0 2 2 2 1 AAA ATPase domain NACHT PF05729.7 gi|529078316|ref|YP_008377319.1| - 0.017 14.7 0.0 0.042 13.5 0.0 1.7 1 1 0 1 1 1 0 NACHT domain FtsK_SpoIIIE PF01580.13 gi|529078316|ref|YP_008377319.1| - 0.019 14.4 0.0 0.038 13.4 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family DUF87 PF01935.12 gi|529078316|ref|YP_008377319.1| - 0.031 14.0 0.0 0.06 13.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function DUF87 AAA_29 PF13555.1 gi|529078316|ref|YP_008377319.1| - 0.076 12.5 0.0 0.17 11.4 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain KaiC PF06745.8 gi|529078316|ref|YP_008377319.1| - 0.09 11.8 0.1 0.23 10.5 0.0 1.7 2 0 0 2 2 2 0 KaiC PRK PF00485.13 gi|529078316|ref|YP_008377319.1| - 0.11 12.1 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family RNA_helicase PF00910.17 gi|529078316|ref|YP_008377319.1| - 0.14 12.3 0.0 0.24 11.6 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_24 PF13479.1 gi|529078316|ref|YP_008377319.1| - 0.23 11.0 0.3 18 4.8 0.0 2.9 2 1 1 3 3 3 0 AAA domain BPD_transp_1 PF00528.17 gi|529078317|ref|YP_008377320.1| - 2.8e-23 82.4 9.3 4.5e-23 81.7 6.5 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|529078318|ref|YP_008377321.1| - 6.1e-31 107.3 14.5 8.7e-31 106.8 10.0 1.2 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component HEAT_2 PF13646.1 gi|529078319|ref|YP_008377322.1| - 1e-19 70.6 34.4 2.1e-06 27.8 1.2 4.9 2 2 2 5 5 5 5 HEAT repeats Adaptin_N PF01602.15 gi|529078319|ref|YP_008377322.1| - 4.2e-17 61.6 0.1 5.3e-09 34.9 0.1 3.9 2 2 1 3 3 3 3 Adaptin N terminal region HEAT PF02985.17 gi|529078319|ref|YP_008377322.1| - 4e-16 57.5 29.4 0.0059 16.5 0.1 8.8 9 0 0 9 9 9 6 HEAT repeat Cnd1 PF12717.2 gi|529078319|ref|YP_008377322.1| - 2.3e-11 43.8 0.0 0.0013 18.6 0.0 4.4 2 2 2 4 4 4 3 non-SMC mitotic condensation complex subunit 1 HEAT_EZ PF13513.1 gi|529078319|ref|YP_008377322.1| - 5.1e-11 42.7 48.1 0.00088 19.6 2.9 8.3 2 2 7 9 9 9 8 HEAT-like repeat Vac14_Fab1_bd PF12755.2 gi|529078319|ref|YP_008377322.1| - 3.4e-08 33.7 0.2 0.092 13.1 0.0 5.2 4 2 2 6 6 5 1 Vacuolar 14 Fab1-binding region DUF2435 PF10363.4 gi|529078319|ref|YP_008377322.1| - 0.00087 19.1 1.3 8.2 6.4 0.0 4.3 3 2 2 5 5 5 1 Protein of unknown function (DUF2435) DNA_alkylation PF08713.6 gi|529078319|ref|YP_008377322.1| - 0.0068 15.9 0.0 0.34 10.3 0.0 3.2 2 2 0 2 2 2 1 DNA alkylation repair enzyme DUF908 PF06012.7 gi|529078319|ref|YP_008377322.1| - 0.009 15.3 0.0 0.7 9.1 0.0 2.4 2 0 0 2 2 2 1 Domain of Unknown Function (DUF908) CLASP_N PF12348.3 gi|529078319|ref|YP_008377322.1| - 0.055 12.8 1.8 30 3.8 0.0 4.4 2 2 3 5 5 5 0 CLASP N terminal DRIM PF07539.7 gi|529078319|ref|YP_008377322.1| - 0.14 11.5 0.0 0.81 9.0 0.0 2.1 2 1 0 2 2 2 0 Down-regulated in metastasis KorB PF08535.5 gi|529078319|ref|YP_008377322.1| - 0.33 11.1 1.8 2.4 8.3 0.1 3.0 3 1 1 4 4 3 0 KorB domain DUF4042 PF13251.1 gi|529078319|ref|YP_008377322.1| - 0.62 9.4 5.3 7.6 5.9 0.0 4.0 4 1 1 5 5 5 0 Domain of unknown function (DUF4042) API5 PF05918.6 gi|529078319|ref|YP_008377322.1| - 0.81 8.1 10.5 0.8 8.1 1.3 3.0 2 1 1 3 3 3 0 Apoptosis inhibitory protein 5 (API5) Cohesin_HEAT PF12765.2 gi|529078319|ref|YP_008377322.1| - 1.2 9.1 23.9 6.6 6.8 0.2 7.0 7 1 0 7 7 7 0 HEAT repeat associated with sister chromatid cohesion Arm PF00514.18 gi|529078319|ref|YP_008377322.1| - 1.5 8.7 4.5 23 4.9 0.1 4.5 6 0 0 6 6 5 0 Armadillo/beta-catenin-like repeat VIT1 PF01988.14 gi|529078321|ref|YP_008377324.1| - 1.5 8.2 9.1 1.9 7.9 6.3 1.1 1 0 0 1 1 1 0 VIT family Saccharop_dh PF03435.13 gi|529078323|ref|YP_008377326.1| - 7.1e-19 68.0 0.1 8.8e-19 67.7 0.1 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_10 PF13460.1 gi|529078323|ref|YP_008377326.1| - 5.3e-10 39.5 0.3 1.3e-09 38.3 0.2 1.6 1 0 0 1 1 1 1 NADH(P)-binding Shikimate_DH PF01488.15 gi|529078323|ref|YP_008377326.1| - 0.00053 20.0 0.0 0.0016 18.5 0.0 1.9 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase ADH_zinc_N_2 PF13602.1 gi|529078323|ref|YP_008377326.1| - 0.021 15.7 0.3 0.12 13.2 0.0 2.5 1 1 0 2 2 2 0 Zinc-binding dehydrogenase UvrB PF12344.3 gi|529078324|ref|YP_008377327.1| - 1.3e-17 63.0 0.4 2.7e-17 62.0 0.3 1.6 1 0 0 1 1 1 1 Ultra-violet resistance protein B Helicase_C PF00271.26 gi|529078324|ref|YP_008377327.1| - 8.3e-14 51.2 0.0 1.7e-13 50.2 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain UVR PF02151.14 gi|529078324|ref|YP_008377327.1| - 6.6e-10 38.1 7.5 6.6e-10 38.1 5.2 2.6 2 0 0 2 2 2 1 UvrB/uvrC motif ResIII PF04851.10 gi|529078324|ref|YP_008377327.1| - 5.7e-08 32.8 0.0 3.7e-07 30.1 0.0 2.1 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|529078324|ref|YP_008377327.1| - 0.00011 21.7 0.0 0.0016 17.9 0.0 2.8 3 0 0 3 3 3 1 DEAD/DEAH box helicase DUF87 PF01935.12 gi|529078324|ref|YP_008377327.1| - 0.0041 16.9 1.3 0.042 13.6 0.0 2.9 2 1 1 3 3 3 1 Domain of unknown function DUF87 UB2H PF14814.1 gi|529078324|ref|YP_008377327.1| - 0.012 15.3 0.0 0.041 13.6 0.0 2.0 1 1 0 1 1 1 0 Bifunctional transglycosylase second domain AAA_5 PF07728.9 gi|529078324|ref|YP_008377327.1| - 0.022 14.4 0.4 0.36 10.5 0.0 2.9 3 1 0 3 3 3 0 AAA domain (dynein-related subfamily) GHMP_kinases_C PF08544.8 gi|529078325|ref|YP_008377328.1| - 8.3e-08 32.3 0.0 1.8e-07 31.2 0.0 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.21 gi|529078325|ref|YP_008377328.1| - 7.1e-05 22.8 0.0 0.00013 21.9 0.0 1.4 1 0 0 1 1 1 1 GHMP kinases N terminal domain DICT PF10069.4 gi|529078326|ref|YP_008377329.1| - 6.2e-20 71.0 0.0 9.5e-20 70.4 0.0 1.2 1 0 0 1 1 1 1 Sensory domain found in DIguanylate Cyclases & Two-component systems PAS_9 PF13426.1 gi|529078327|ref|YP_008377330.1| - 9.7e-43 144.7 5.0 1.1e-19 70.7 0.0 6.1 6 0 0 6 6 6 5 PAS domain PAS_4 PF08448.5 gi|529078327|ref|YP_008377330.1| - 2.3e-38 130.6 19.7 6.2e-17 61.6 0.1 6.3 6 0 0 6 6 6 5 PAS fold PAS PF00989.19 gi|529078327|ref|YP_008377330.1| - 7.3e-34 115.9 2.3 1.7e-17 63.1 0.0 5.7 5 1 0 5 5 5 4 PAS fold PAS_3 PF08447.6 gi|529078327|ref|YP_008377330.1| - 8.5e-34 115.5 1.4 4e-23 81.3 0.3 4.4 4 0 0 4 4 4 2 PAS fold HATPase_c PF02518.21 gi|529078327|ref|YP_008377330.1| - 2e-24 85.4 0.0 4.3e-24 84.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|529078327|ref|YP_008377330.1| - 4.6e-24 83.3 1.7 2.4e-05 24.0 0.0 5.7 5 0 0 5 5 5 5 PAS domain Response_reg PF00072.19 gi|529078327|ref|YP_008377330.1| - 1.2e-21 76.7 0.2 7.3e-20 71.0 0.0 2.9 2 0 0 2 2 2 1 Response regulator receiver domain PAS_7 PF12860.2 gi|529078327|ref|YP_008377330.1| - 3e-09 36.8 0.8 6.5e-05 22.9 0.0 4.7 4 1 0 4 4 4 1 PAS fold HATPase_c_2 PF13581.1 gi|529078327|ref|YP_008377330.1| - 5.3e-08 32.6 0.3 2.7e-07 30.3 0.0 2.4 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HisKA PF00512.20 gi|529078327|ref|YP_008377330.1| - 1.3e-05 25.1 7.7 6e-05 22.9 0.3 3.4 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.1 gi|529078327|ref|YP_008377330.1| - 5e-05 22.9 0.0 0.00041 19.9 0.0 2.3 2 0 0 2 2 2 1 GHKL domain SPOB_a PF14689.1 gi|529078327|ref|YP_008377330.1| - 0.0038 16.7 0.3 0.013 15.0 0.2 1.9 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain DUF1365 PF07103.6 gi|529078327|ref|YP_008377330.1| - 0.22 10.5 0.0 0.45 9.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1365) ILVD_EDD PF00920.16 gi|529078328|ref|YP_008377331.1| - 1e-205 684.0 0.3 1.2e-205 683.9 0.2 1.0 1 0 0 1 1 1 1 Dehydratase family MatE PF01554.13 gi|529078330|ref|YP_008377333.1| - 5.4e-47 159.4 30.6 7.9e-25 87.3 7.2 2.5 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|529078330|ref|YP_008377333.1| - 1.3e-11 44.4 6.3 1.3e-11 44.4 4.4 4.6 3 1 2 5 5 5 1 Polysaccharide biosynthesis C-terminal domain TcdA_TcdB_pore PF12920.2 gi|529078330|ref|YP_008377333.1| - 5.5 4.7 7.9 11 3.8 5.5 1.5 1 0 0 1 1 1 0 TcdA/TcdB pore forming domain Sua5_yciO_yrdC PF01300.13 gi|529078331|ref|YP_008377334.1| - 9.3e-47 158.5 0.0 2.9e-46 156.9 0.0 1.8 2 0 0 2 2 2 1 Telomere recombination zf-HYPF PF07503.7 gi|529078331|ref|YP_008377334.1| - 1e-28 98.4 11.0 4.5e-16 57.9 1.7 2.4 2 0 0 2 2 2 2 HypF finger Acylphosphatase PF00708.13 gi|529078331|ref|YP_008377334.1| - 1.3e-22 79.6 0.0 2.5e-22 78.7 0.0 1.5 1 0 0 1 1 1 1 Acylphosphatase DZR PF12773.2 gi|529078331|ref|YP_008377334.1| - 0.048 13.4 2.6 4.7 7.1 0.2 2.4 2 0 0 2 2 2 0 Double zinc ribbon Peptidase_M22 PF00814.20 gi|529078331|ref|YP_008377334.1| - 0.062 12.7 0.1 0.18 11.2 0.0 1.7 2 0 0 2 2 2 0 Glycoprotease family SdiA-regulated PF06977.6 gi|529078331|ref|YP_008377334.1| - 0.15 10.9 0.0 0.3 9.9 0.0 1.4 1 0 0 1 1 1 0 SdiA-regulated Acetate_kinase PF00871.12 gi|529078331|ref|YP_008377334.1| - 0.22 9.9 0.1 0.34 9.3 0.0 1.2 1 0 0 1 1 1 0 Acetokinase family Zn-ribbon_8 PF09723.5 gi|529078331|ref|YP_008377334.1| - 0.79 9.7 5.8 2 8.4 0.9 2.7 3 0 0 3 3 3 0 Zinc ribbon domain MFS_1 PF07690.11 gi|529078333|ref|YP_008377336.1| - 5.6e-32 110.8 53.6 3.2e-24 85.3 15.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF1228 PF06779.9 gi|529078333|ref|YP_008377336.1| - 0.00037 20.4 1.4 0.00037 20.4 1.0 3.9 4 0 0 4 4 4 1 Protein of unknown function (DUF1228) MFS_1 PF07690.11 gi|529078334|ref|YP_008377337.1| - 1.8e-25 89.4 67.5 1.2e-23 83.3 27.4 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF4131 PF13567.1 gi|529078334|ref|YP_008377337.1| - 0.024 14.0 0.8 0.024 14.0 0.5 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4131) MFS_2 PF13347.1 gi|529078334|ref|YP_008377337.1| - 0.15 10.4 32.5 0.11 10.8 7.0 2.9 2 1 1 3 3 3 0 MFS/sugar transport protein cobW PF02492.14 gi|529078335|ref|YP_008377338.1| - 1.6e-32 112.4 0.0 2.2e-32 111.9 0.0 1.2 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ArgK PF03308.11 gi|529078335|ref|YP_008377338.1| - 2.6e-05 23.1 0.0 0.0053 15.5 0.0 2.1 2 0 0 2 2 2 2 ArgK protein DUF87 PF01935.12 gi|529078335|ref|YP_008377338.1| - 0.0018 18.1 0.0 0.0028 17.4 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_16 PF13191.1 gi|529078335|ref|YP_008377338.1| - 0.0019 18.2 0.0 0.0037 17.2 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain MobB PF03205.9 gi|529078335|ref|YP_008377338.1| - 0.0022 17.7 0.0 0.022 14.4 0.0 2.4 2 1 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B T2SE PF00437.15 gi|529078335|ref|YP_008377338.1| - 0.03 13.2 0.0 0.046 12.6 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_33 PF13671.1 gi|529078335|ref|YP_008377338.1| - 0.05 13.4 0.0 0.11 12.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.4 gi|529078335|ref|YP_008377338.1| - 0.051 12.2 0.0 0.074 11.6 0.0 1.1 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.1 gi|529078335|ref|YP_008377338.1| - 0.074 13.1 0.0 0.16 12.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|529078335|ref|YP_008377338.1| - 0.08 12.8 0.0 0.24 11.3 0.0 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_18 PF13238.1 gi|529078335|ref|YP_008377338.1| - 0.13 12.6 0.0 0.29 11.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain HypA PF01155.14 gi|529078336|ref|YP_008377339.1| - 9.9e-20 70.3 0.0 1.1e-19 70.1 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family AIRS_C PF02769.17 gi|529078337|ref|YP_008377340.1| - 7.7e-25 87.6 4.0 1.3e-24 86.8 2.8 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|529078337|ref|YP_008377340.1| - 3.8e-14 52.6 2.5 3.6e-13 49.5 0.4 2.5 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain HypD PF01924.11 gi|529078338|ref|YP_008377341.1| - 3e-131 437.3 0.0 3.4e-131 437.2 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family DUF3025 PF11227.3 gi|529078338|ref|YP_008377341.1| - 0.075 12.5 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3025) HupF_HypC PF01455.13 gi|529078339|ref|YP_008377342.1| - 1.4e-06 28.1 0.0 2.4e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 HupF/HypC family DUF1508 PF07411.7 gi|529078341|ref|YP_008377344.1| - 4.8e-21 73.9 0.1 5.7e-21 73.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1508) E1-E2_ATPase PF00122.15 gi|529078342|ref|YP_008377345.1| - 8.1e-69 231.1 4.9 8.1e-69 231.1 3.4 2.1 3 0 0 3 3 3 1 E1-E2 ATPase Cation_ATPase_C PF00689.16 gi|529078342|ref|YP_008377345.1| - 5.4e-38 130.3 9.5 5.4e-38 130.3 6.6 2.3 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.21 gi|529078342|ref|YP_008377345.1| - 2.9e-34 119.3 0.0 6.6e-34 118.2 0.0 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like2 PF13246.1 gi|529078342|ref|YP_008377345.1| - 2.7e-20 72.1 0.0 6.4e-20 70.9 0.0 1.7 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit Cation_ATPase_N PF00690.21 gi|529078342|ref|YP_008377345.1| - 3.8e-20 71.1 0.0 9.4e-20 69.8 0.0 1.7 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus HAD PF12710.2 gi|529078342|ref|YP_008377345.1| - 9e-19 68.3 0.1 2.3e-18 67.0 0.1 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|529078342|ref|YP_008377345.1| - 0.00012 21.7 0.2 0.011 15.2 0.2 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase PHO4 PF01384.15 gi|529078343|ref|YP_008377346.1| - 2.5e-58 197.3 40.1 2.6e-57 193.9 26.5 2.0 1 1 0 1 1 1 1 Phosphate transporter family Usp PF00582.21 gi|529078344|ref|YP_008377347.1| - 5e-25 88.3 3.1 5.6e-25 88.1 2.2 1.0 1 0 0 1 1 1 1 Universal stress protein family DUF1840 PF08895.6 gi|529078344|ref|YP_008377347.1| - 0.06 13.3 0.1 0.097 12.6 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1840) DUF1628 PF07790.6 gi|529078346|ref|YP_008377349.1| - 0.00078 20.1 0.1 0.0014 19.3 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) TruB_N PF01509.13 gi|529078348|ref|YP_008377351.1| - 4e-24 85.4 0.1 1.9e-20 73.5 0.1 3.1 1 1 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) DKCLD PF08068.7 gi|529078348|ref|YP_008377351.1| - 3.2e-08 33.3 0.0 5.8e-08 32.5 0.0 1.4 1 0 0 1 1 1 1 DKCLD (NUC011) domain PUA PF01472.15 gi|529078348|ref|YP_008377351.1| - 9.7e-06 25.2 0.0 1.9e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 PUA domain Cytidylate_kin2 PF13189.1 gi|529078349|ref|YP_008377352.1| - 1.7e-20 73.6 0.8 4.4e-19 69.0 0.6 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|529078349|ref|YP_008377352.1| - 3e-16 59.9 0.0 4.1e-16 59.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|529078349|ref|YP_008377352.1| - 4.4e-15 56.5 0.7 1e-14 55.4 0.3 1.6 1 1 1 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|529078349|ref|YP_008377352.1| - 1e-09 38.4 0.1 2.7e-08 33.8 0.1 2.1 1 1 0 1 1 1 1 AAA domain SKI PF01202.17 gi|529078349|ref|YP_008377352.1| - 4.4e-07 29.9 0.9 1.6e-06 28.0 0.6 1.8 1 1 0 1 1 1 1 Shikimate kinase ADK PF00406.17 gi|529078349|ref|YP_008377352.1| - 2.1e-05 24.4 0.0 5.1e-05 23.1 0.0 1.6 1 1 1 2 2 2 1 Adenylate kinase AAA_28 PF13521.1 gi|529078349|ref|YP_008377352.1| - 0.00011 22.1 0.1 0.00023 21.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|529078349|ref|YP_008377352.1| - 0.00029 20.8 0.3 0.0006 19.8 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain NACHT PF05729.7 gi|529078349|ref|YP_008377352.1| - 0.00037 20.2 0.0 0.00054 19.6 0.0 1.2 1 0 0 1 1 1 1 NACHT domain Cytidylate_kin PF02224.13 gi|529078349|ref|YP_008377352.1| - 0.0019 17.6 0.4 0.0025 17.2 0.2 1.2 1 0 0 1 1 1 1 Cytidylate kinase AAA_25 PF13481.1 gi|529078349|ref|YP_008377352.1| - 0.0022 17.4 0.2 0.004 16.5 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|529078349|ref|YP_008377352.1| - 0.0023 18.0 0.0 0.005 16.9 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|529078349|ref|YP_008377352.1| - 0.01 15.5 0.0 0.024 14.3 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_30 PF13604.1 gi|529078349|ref|YP_008377352.1| - 0.011 15.2 0.3 0.066 12.7 0.1 2.1 1 1 1 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|529078349|ref|YP_008377352.1| - 0.012 15.8 0.0 0.022 14.9 0.0 1.5 1 0 0 1 1 1 0 RNA helicase CoaE PF01121.15 gi|529078349|ref|YP_008377352.1| - 0.013 14.9 0.0 0.13 11.5 0.0 2.0 2 0 0 2 2 2 0 Dephospho-CoA kinase AAA_23 PF13476.1 gi|529078349|ref|YP_008377352.1| - 0.019 15.2 0.0 0.029 14.6 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|529078349|ref|YP_008377352.1| - 0.02 14.4 0.1 0.037 13.5 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain CbiA PF01656.18 gi|529078349|ref|YP_008377352.1| - 0.025 13.9 0.6 0.04 13.3 0.4 1.6 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain ABC_tran PF00005.22 gi|529078349|ref|YP_008377352.1| - 0.025 14.8 0.0 0.031 14.5 0.0 1.5 1 1 0 1 1 1 0 ABC transporter AAA PF00004.24 gi|529078349|ref|YP_008377352.1| - 0.029 14.5 0.0 0.044 13.9 0.0 1.3 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PRK PF00485.13 gi|529078349|ref|YP_008377352.1| - 0.046 13.2 0.0 0.18 11.3 0.0 1.9 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family T2SE PF00437.15 gi|529078349|ref|YP_008377352.1| - 0.053 12.4 0.2 0.078 11.8 0.2 1.4 1 1 0 1 1 1 0 Type II/IV secretion system protein DUF2075 PF09848.4 gi|529078349|ref|YP_008377352.1| - 0.064 12.2 0.0 0.095 11.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) KTI12 PF08433.5 gi|529078349|ref|YP_008377352.1| - 0.064 12.4 0.0 0.092 11.9 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 ATP_bind_1 PF03029.12 gi|529078349|ref|YP_008377352.1| - 0.067 12.7 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_5 PF07728.9 gi|529078349|ref|YP_008377352.1| - 0.079 12.6 0.0 0.16 11.6 0.0 1.5 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) MobB PF03205.9 gi|529078349|ref|YP_008377352.1| - 0.084 12.5 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B CobU PF02283.11 gi|529078349|ref|YP_008377352.1| - 0.086 12.2 0.1 0.24 10.7 0.0 1.7 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase NTPase_1 PF03266.10 gi|529078349|ref|YP_008377352.1| - 0.12 12.1 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 NTPase AAA_10 PF12846.2 gi|529078349|ref|YP_008377352.1| - 0.13 11.6 0.3 0.23 10.8 0.0 1.6 2 0 0 2 2 2 0 AAA-like domain Thymidylate_kin PF02223.12 gi|529078349|ref|YP_008377352.1| - 0.15 11.4 0.4 5.7 6.2 0.0 2.3 1 1 0 2 2 2 0 Thymidylate kinase NB-ARC PF00931.17 gi|529078349|ref|YP_008377352.1| - 0.15 10.8 0.0 0.19 10.5 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain DUF106 PF01956.11 gi|529078350|ref|YP_008377353.1| - 6.9e-42 142.8 0.4 8.8e-42 142.4 0.3 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF106 60KD_IMP PF02096.15 gi|529078350|ref|YP_008377353.1| - 1.8e-05 24.4 0.2 3e-05 23.7 0.1 1.4 1 0 0 1 1 1 1 60Kd inner membrane protein Bac_export_2 PF01312.14 gi|529078350|ref|YP_008377353.1| - 0.13 11.0 0.1 0.19 10.6 0.0 1.1 1 0 0 1 1 1 0 FlhB HrpN YscU SpaS Family ADK PF00406.17 gi|529078351|ref|YP_008377354.1| - 6.2e-44 149.5 0.0 7.4e-44 149.2 0.0 1.1 1 0 0 1 1 1 1 Adenylate kinase ADK_lid PF05191.9 gi|529078351|ref|YP_008377354.1| - 5e-18 64.4 0.7 8.1e-18 63.8 0.5 1.3 1 0 0 1 1 1 1 Adenylate kinase, active site lid AAA_17 PF13207.1 gi|529078351|ref|YP_008377354.1| - 7.5e-07 29.9 0.4 2.6e-06 28.2 0.3 1.9 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|529078351|ref|YP_008377354.1| - 7.1e-06 25.9 0.0 1.7e-05 24.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|529078351|ref|YP_008377354.1| - 5.2e-05 23.5 0.0 9.7e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF3039 PF11238.3 gi|529078351|ref|YP_008377354.1| - 0.0048 16.3 0.1 0.0091 15.4 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3039) DUF1451 PF07295.6 gi|529078351|ref|YP_008377354.1| - 0.0085 15.8 0.1 0.015 15.1 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1451) TF_Zn_Ribbon PF08271.7 gi|529078351|ref|YP_008377354.1| - 0.015 14.5 3.7 0.035 13.4 2.6 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding NinF PF05810.7 gi|529078351|ref|YP_008377354.1| - 0.016 14.9 0.7 0.041 13.6 0.5 1.7 1 0 0 1 1 1 0 NinF protein DZR PF12773.2 gi|529078351|ref|YP_008377354.1| - 0.017 14.9 1.3 0.083 12.7 1.1 1.5 1 1 0 1 1 1 0 Double zinc ribbon PduV-EutP PF10662.4 gi|529078351|ref|YP_008377354.1| - 0.054 12.9 0.0 0.11 12.0 0.0 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation HypA PF01155.14 gi|529078351|ref|YP_008377354.1| - 0.061 13.0 0.3 0.098 12.3 0.2 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zeta_toxin PF06414.7 gi|529078351|ref|YP_008377354.1| - 0.063 12.3 0.1 0.16 11.0 0.0 1.7 1 1 0 1 1 1 0 Zeta toxin GFA PF04828.9 gi|529078351|ref|YP_008377354.1| - 0.083 12.8 0.2 1 9.3 0.2 2.2 1 1 0 1 1 1 0 Glutathione-dependent formaldehyde-activating enzyme zf-IS66 PF13005.2 gi|529078351|ref|YP_008377354.1| - 0.084 12.8 1.0 1.2 9.1 0.1 2.3 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-C4_Topoisom PF01396.14 gi|529078351|ref|YP_008377354.1| - 0.085 12.3 0.4 0.48 9.9 0.0 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger RuvB_N PF05496.7 gi|529078351|ref|YP_008377354.1| - 0.092 11.7 0.0 0.13 11.2 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus A2L_zn_ribbon PF08792.5 gi|529078351|ref|YP_008377354.1| - 0.18 11.3 1.7 5.4 6.6 0.2 2.4 2 0 0 2 2 2 0 A2L zinc ribbon domain Nudix_N_2 PF14803.1 gi|529078351|ref|YP_008377354.1| - 0.44 10.2 2.4 11 5.7 0.2 2.3 2 0 0 2 2 2 0 Nudix N-terminal Zn_ribbon_recom PF13408.1 gi|529078351|ref|YP_008377354.1| - 1.1 9.5 3.5 4.4 7.6 0.5 2.8 2 1 0 2 2 1 0 Recombinase zinc beta ribbon domain Zn-ribbon_8 PF09723.5 gi|529078351|ref|YP_008377354.1| - 1.2 9.1 3.8 0.79 9.7 1.2 1.8 2 0 0 2 2 1 0 Zinc ribbon domain Prok-RING_1 PF14446.1 gi|529078351|ref|YP_008377354.1| - 1.3 8.8 4.7 16 5.3 0.4 2.2 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 HATPase_c PF02518.21 gi|529078352|ref|YP_008377355.1| - 4.5e-16 58.5 0.0 1e-15 57.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|529078352|ref|YP_008377355.1| - 4.1e-13 49.1 0.2 1.4e-12 47.3 0.1 2.0 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|529078352|ref|YP_008377355.1| - 6e-10 39.1 0.2 3.3e-09 36.7 0.0 2.4 2 0 0 2 2 2 1 PAS fold DUF1349 PF07081.6 gi|529078352|ref|YP_008377355.1| - 1.2e-05 24.8 0.0 9.1e-05 21.8 0.0 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF1349) PAS_9 PF13426.1 gi|529078352|ref|YP_008377355.1| - 0.0038 17.5 0.0 0.035 14.4 0.0 2.3 2 0 0 2 2 2 1 PAS domain HATPase_c_3 PF13589.1 gi|529078352|ref|YP_008377355.1| - 0.0063 16.1 0.0 0.012 15.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OKR_DC_1_N PF03709.10 gi|529078352|ref|YP_008377355.1| - 0.075 13.0 0.3 0.21 11.6 0.2 1.7 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain URO-D PF01208.12 gi|529078353|ref|YP_008377356.1| - 1.3e-105 353.1 0.0 1.4e-105 352.9 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) GST_C_2 PF13410.1 gi|529078353|ref|YP_008377356.1| - 0.11 12.4 1.0 0.85 9.5 0.1 2.4 2 0 0 2 2 2 0 Glutathione S-transferase, C-terminal domain Ferrochelatase PF00762.14 gi|529078354|ref|YP_008377357.1| - 4.8e-70 236.0 0.0 5.9e-70 235.7 0.0 1.0 1 0 0 1 1 1 1 Ferrochelatase CbiX PF01903.12 gi|529078354|ref|YP_008377357.1| - 7.9e-06 25.9 0.1 0.00016 21.7 0.0 2.4 2 0 0 2 2 2 1 CbiX Glyco_trans_4_4 PF13579.1 gi|529078354|ref|YP_008377357.1| - 5.1e-05 23.4 1.3 0.0021 18.2 0.2 2.4 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain SecY PF00344.15 gi|529078355|ref|YP_008377358.1| - 5.3e-91 305.1 21.1 5.3e-91 305.1 14.6 1.5 2 0 0 2 2 2 1 SecY translocase Plug_translocon PF10559.4 gi|529078355|ref|YP_008377358.1| - 2.1e-08 33.5 2.1 5.7e-08 32.1 1.5 1.8 1 0 0 1 1 1 1 Plug domain of Sec61p Ribosomal_L18e PF00828.14 gi|529078356|ref|YP_008377359.1| - 9.6e-26 90.6 0.1 1.4e-25 90.1 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 Ribosomal_L30 PF00327.15 gi|529078357|ref|YP_008377360.1| - 1.6e-10 40.4 0.0 4.1e-10 39.1 0.0 1.7 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_S5 PF00333.15 gi|529078358|ref|YP_008377361.1| - 1.8e-28 98.0 1.4 2.9e-28 97.3 1.0 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.10 gi|529078358|ref|YP_008377361.1| - 4.5e-24 83.5 0.1 7e-24 82.9 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L18p PF00861.17 gi|529078359|ref|YP_008377362.1| - 3.4e-31 107.9 0.0 4.3e-31 107.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal L18p/L5e family Ribosomal_L19e PF01280.15 gi|529078360|ref|YP_008377363.1| - 4.2e-55 185.5 2.5 4.5e-55 185.4 1.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e SHOCT PF09851.4 gi|529078360|ref|YP_008377363.1| - 9.1e-05 21.7 1.1 0.00035 19.9 0.8 2.0 1 0 0 1 1 1 1 Short C-terminal domain DUF4258 PF14076.1 gi|529078360|ref|YP_008377363.1| - 0.036 14.0 0.1 0.068 13.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4258) Dabb PF07876.7 gi|529078360|ref|YP_008377363.1| - 0.082 13.3 0.0 0.17 12.3 0.0 1.5 1 0 0 1 1 1 0 Stress responsive A/B Barrel Domain CTP_synth_N PF06418.9 gi|529078360|ref|YP_008377363.1| - 0.14 11.2 0.4 0.19 10.7 0.3 1.2 1 0 0 1 1 1 0 CTP synthase N-terminus Vps35 PF03635.12 gi|529078360|ref|YP_008377363.1| - 0.18 9.8 0.0 0.23 9.5 0.0 1.1 1 0 0 1 1 1 0 Vacuolar protein sorting-associated protein 35 Ribosomal_L32e PF01655.13 gi|529078361|ref|YP_008377364.1| - 2.4e-38 130.5 2.5 4.6e-38 129.6 1.2 1.9 3 0 0 3 3 2 1 Ribosomal protein L32 HHH_5 PF14520.1 gi|529078361|ref|YP_008377364.1| - 3e-31 107.3 10.8 2.1e-15 56.6 0.3 3.6 3 0 0 3 3 3 3 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.4 gi|529078361|ref|YP_008377364.1| - 6.3e-17 60.8 0.1 1.9e-07 30.5 0.0 2.6 2 0 0 2 2 2 2 Fingers domain of DNA polymerase lambda HHH PF00633.18 gi|529078361|ref|YP_008377364.1| - 5.4e-15 54.1 6.6 0.008 15.8 0.1 5.3 5 0 0 5 5 5 4 Helix-hairpin-helix motif HHH_2 PF12826.2 gi|529078361|ref|YP_008377364.1| - 4.5e-14 52.0 6.0 4.6e-06 26.4 0.5 3.6 2 2 2 4 4 4 3 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|529078361|ref|YP_008377364.1| - 8.1e-11 41.7 0.1 0.0012 18.7 0.0 3.9 3 3 2 5 5 5 2 Pathogenicity locus HHH_3 PF12836.2 gi|529078361|ref|YP_008377364.1| - 3.7e-09 36.3 1.1 0.15 12.0 0.0 5.3 3 2 1 5 5 5 2 Helix-hairpin-helix motif HHH_8 PF14716.1 gi|529078361|ref|YP_008377364.1| - 4.5e-09 36.3 1.0 0.57 10.3 0.0 4.5 3 1 1 4 4 4 3 Helix-hairpin-helix domain IMS_HHH PF11798.3 gi|529078361|ref|YP_008377364.1| - 3.1e-06 26.9 0.0 2.9 8.1 0.0 4.4 4 0 0 4 4 4 1 IMS family HHH motif BAF PF02961.9 gi|529078361|ref|YP_008377364.1| - 3e-05 24.2 0.7 5.8 7.2 0.0 4.2 2 2 1 4 4 4 1 Barrier to autointegration factor DUF4332 PF14229.1 gi|529078361|ref|YP_008377364.1| - 8.8e-05 22.4 0.1 0.75 9.7 0.0 2.8 3 0 0 3 3 3 2 Domain of unknown function (DUF4332) RNA_pol_A_CTD PF03118.10 gi|529078361|ref|YP_008377364.1| - 0.0017 17.7 0.0 1.2 8.6 0.0 2.6 2 0 0 2 2 2 2 Bacterial RNA polymerase, alpha chain C terminal domain Transposase_20 PF02371.11 gi|529078361|ref|YP_008377364.1| - 0.0018 18.3 0.2 6.7 6.8 0.0 3.8 4 0 0 4 4 4 1 Transposase IS116/IS110/IS902 family HhH-GPD PF00730.20 gi|529078361|ref|YP_008377364.1| - 0.0063 16.7 0.2 9.4 6.5 0.0 3.2 2 1 0 3 3 3 0 HhH-GPD superfamily base excision DNA repair protein DUF3701 PF12482.3 gi|529078361|ref|YP_008377364.1| - 0.0067 16.1 1.0 4.4 7.1 0.1 2.7 2 0 0 2 2 2 2 Phage integrase protein DUF711 PF05167.7 gi|529078361|ref|YP_008377364.1| - 0.019 13.7 0.5 0.035 12.8 0.3 1.3 1 0 0 1 1 1 0 Uncharacterised ACR (DUF711) LytR_C PF13399.1 gi|529078361|ref|YP_008377364.1| - 0.03 14.6 12.1 0.31 11.4 0.6 4.2 3 2 2 5 5 5 0 LytR cell envelope-related transcriptional attenuator TfoX_C PF04994.8 gi|529078361|ref|YP_008377364.1| - 0.11 12.3 0.0 8.7 6.3 0.0 2.7 3 0 0 3 3 3 0 TfoX C-terminal domain Ribosomal_L6 PF00347.18 gi|529078362|ref|YP_008377365.1| - 2.6e-22 79.0 0.0 2.2e-11 44.0 0.0 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 Ribosomal_S8 PF00410.14 gi|529078363|ref|YP_008377366.1| - 1.1e-21 76.9 0.0 1.6e-21 76.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.16 gi|529078364|ref|YP_008377367.1| - 7.9e-15 53.9 3.8 9.3e-15 53.7 2.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e DUF4428 PF14471.1 gi|529078364|ref|YP_008377367.1| - 0.001 18.7 0.1 0.0013 18.4 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4428) zf-P11 PF03854.9 gi|529078364|ref|YP_008377367.1| - 0.1 12.1 0.4 0.12 11.8 0.3 1.1 1 0 0 1 1 1 0 P-11 zinc finger Ribosomal_L5_C PF00673.16 gi|529078365|ref|YP_008377368.1| - 5.5e-21 74.1 0.0 8.1e-21 73.5 0.0 1.3 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|529078365|ref|YP_008377368.1| - 1.1e-16 60.3 0.0 2.1e-16 59.4 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S4e PF00900.15 gi|529078366|ref|YP_008377369.1| - 2e-22 78.6 0.0 3.7e-22 77.7 0.0 1.5 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.7 gi|529078366|ref|YP_008377369.1| - 2.7e-11 43.1 0.0 5e-11 42.2 0.0 1.4 1 0 0 1 1 1 1 RS4NT (NUC023) domain KOW PF00467.24 gi|529078366|ref|YP_008377369.1| - 0.0081 15.8 1.2 0.02 14.6 0.0 2.4 3 0 0 3 3 3 1 KOW motif Peptidase_S24 PF00717.18 gi|529078366|ref|YP_008377369.1| - 0.017 14.7 0.0 0.045 13.3 0.0 1.8 2 0 0 2 2 2 0 Peptidase S24-like S4 PF01479.20 gi|529078366|ref|YP_008377369.1| - 0.025 13.9 0.0 0.047 13.1 0.0 1.5 1 0 0 1 1 1 0 S4 domain S4_2 PF13275.1 gi|529078366|ref|YP_008377369.1| - 0.13 11.9 0.1 0.34 10.5 0.0 1.8 2 0 0 2 2 2 0 S4 domain Autophagy_N PF03986.8 gi|529078366|ref|YP_008377369.1| - 4.1 7.1 12.4 4.6 6.9 0.0 2.6 2 1 1 3 3 3 0 Autophagocytosis associated protein (Atg3), N-terminal domain KOW PF00467.24 gi|529078367|ref|YP_008377370.1| - 1.6e-07 30.7 0.3 3.7e-07 29.6 0.0 1.8 2 0 0 2 2 2 1 KOW motif Ribosomal_L14 PF00238.14 gi|529078368|ref|YP_008377371.1| - 9.5e-37 125.4 0.0 1.1e-36 125.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e FecR PF04773.8 gi|529078368|ref|YP_008377371.1| - 0.11 12.7 0.1 1.6 9.0 0.0 2.2 1 1 1 2 2 2 0 FecR protein Ribosomal_S17 PF00366.15 gi|529078369|ref|YP_008377372.1| - 1.1e-27 95.8 0.7 1.3e-27 95.5 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 UPF0086 PF01868.11 gi|529078370|ref|YP_008377373.1| - 5.3e-24 83.6 0.0 6.1e-24 83.4 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 PQQ_2 PF13360.1 gi|529078370|ref|YP_008377373.1| - 0.017 14.5 0.1 0.021 14.2 0.1 1.1 1 0 0 1 1 1 0 PQQ-like domain Ribosomal_L29 PF00831.18 gi|529078371|ref|YP_008377374.1| - 4.2e-19 67.9 0.1 4.7e-19 67.8 0.1 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein HHH_8 PF14716.1 gi|529078371|ref|YP_008377374.1| - 0.083 13.0 0.6 0.3 11.2 0.1 1.9 1 1 1 2 2 2 0 Helix-hairpin-helix domain Ribosomal_S3_C PF00189.15 gi|529078372|ref|YP_008377375.1| - 5e-16 58.6 0.1 7.5e-16 58.1 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.12 gi|529078372|ref|YP_008377375.1| - 6.6e-16 57.6 0.1 1.6e-15 56.4 0.0 1.7 1 0 0 1 1 1 1 KH domain KH_1 PF00013.24 gi|529078372|ref|YP_008377375.1| - 0.00076 19.0 0.4 0.00076 19.0 0.3 2.3 3 0 0 3 3 3 1 KH domain KH_3 PF13014.1 gi|529078372|ref|YP_008377375.1| - 0.023 14.3 3.4 0.027 14.1 0.9 2.3 2 0 0 2 2 2 0 KH domain KH_4 PF13083.1 gi|529078372|ref|YP_008377375.1| - 0.033 13.8 0.1 0.17 11.5 0.1 2.2 1 0 0 1 1 1 0 KH domain Ribosomal_L22 PF00237.14 gi|529078373|ref|YP_008377376.1| - 8.5e-28 96.3 0.0 9.9e-28 96.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S19 PF00203.16 gi|529078374|ref|YP_008377377.1| - 9e-28 95.7 0.0 1.5e-27 94.9 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein S19 MgtE_N PF03448.12 gi|529078374|ref|YP_008377377.1| - 0.033 14.5 0.1 0.05 13.9 0.1 1.2 1 0 0 1 1 1 0 MgtE intracellular N domain Citrate_synt PF00285.16 gi|529078374|ref|YP_008377377.1| - 0.034 12.8 0.0 0.035 12.8 0.0 1.2 1 0 0 1 1 1 0 Citrate synthase Ribosomal_L2_C PF03947.13 gi|529078375|ref|YP_008377378.1| - 5.8e-45 152.2 0.6 7.7e-45 151.8 0.4 1.2 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|529078375|ref|YP_008377378.1| - 2.7e-16 59.2 0.0 7.4e-16 57.8 0.0 1.8 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_L23 PF00276.15 gi|529078376|ref|YP_008377379.1| - 3.4e-20 71.7 1.4 4.3e-20 71.4 1.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L23 P2 PF07194.6 gi|529078376|ref|YP_008377379.1| - 0.015 15.1 2.0 0.093 12.5 0.4 2.0 1 1 1 2 2 2 0 P2 response regulator binding domain DUF2551 PF10826.3 gi|529078376|ref|YP_008377379.1| - 0.06 13.2 0.1 0.086 12.7 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2551) Cadherin-like PF12733.2 gi|529078376|ref|YP_008377379.1| - 0.1 12.8 0.6 0.12 12.6 0.4 1.2 1 0 0 1 1 1 0 Cadherin-like beta sandwich domain Flagellin_IN PF07196.8 gi|529078376|ref|YP_008377379.1| - 0.12 12.3 2.8 0.84 9.6 2.0 2.1 1 1 0 1 1 1 0 Flagellin hook IN motif Ribosomal_L4 PF00573.17 gi|529078377|ref|YP_008377380.1| - 4.1e-41 140.4 0.0 4.7e-41 140.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family DUF4398 PF14346.1 gi|529078377|ref|YP_008377380.1| - 0.057 13.4 2.6 0.55 10.3 0.4 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4398) Ribosomal_L3 PF00297.17 gi|529078378|ref|YP_008377381.1| - 3.9e-88 295.2 0.0 6.8e-88 294.4 0.0 1.4 2 0 0 2 2 2 1 Ribosomal protein L3 Methyltrn_RNA_3 PF02598.12 gi|529078379|ref|YP_008377382.1| - 6.3e-51 173.4 0.0 7.4e-51 173.2 0.0 1.0 1 0 0 1 1 1 1 Putative RNA methyltransferase DUF4203 PF13886.1 gi|529078380|ref|YP_008377383.1| - 0.26 10.7 12.9 0.41 10.0 9.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4203) DUF3792 PF12670.2 gi|529078380|ref|YP_008377383.1| - 3.7 7.4 12.7 9.1 6.1 5.5 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF3792) FKBP_C PF00254.23 gi|529078381|ref|YP_008377384.1| - 9.9e-23 79.9 0.1 1.5e-22 79.4 0.1 1.3 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase Peptidase_S13 PF02113.10 gi|529078381|ref|YP_008377384.1| - 0.048 12.1 0.0 0.056 11.9 0.0 1.0 1 0 0 1 1 1 0 D-Ala-D-Ala carboxypeptidase 3 (S13) family RHH_1 PF01402.16 gi|529078382|ref|YP_008377385.1| - 0.00019 21.1 0.9 0.00025 20.7 0.6 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family MR_MLE_C PF13378.1 gi|529078383|ref|YP_008377386.1| - 8.4e-29 99.7 0.1 1.5e-28 99.0 0.0 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|529078383|ref|YP_008377386.1| - 4.3e-14 52.4 0.0 7.9e-14 51.6 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|529078383|ref|YP_008377386.1| - 2.4e-13 50.4 1.7 2e-12 47.4 0.0 3.0 3 0 0 3 3 3 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SHOCT PF09851.4 gi|529078384|ref|YP_008377387.1| - 9e-06 24.9 0.5 1.4e-05 24.3 0.4 1.3 1 0 0 1 1 1 1 Short C-terminal domain GvpG PF05120.7 gi|529078384|ref|YP_008377387.1| - 0.0014 18.3 0.5 0.0024 17.6 0.4 1.5 1 1 0 1 1 1 1 Gas vesicle protein G DUF1469 PF07332.6 gi|529078384|ref|YP_008377387.1| - 0.0016 18.1 4.6 0.0026 17.4 3.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1469) BOFC_N PF08977.5 gi|529078384|ref|YP_008377387.1| - 0.073 12.9 0.4 0.18 11.6 0.2 1.8 1 1 1 2 2 2 0 Bypass of Forespore C, N terminal DUF575 PF04746.7 gi|529078384|ref|YP_008377387.1| - 0.074 13.0 0.2 0.13 12.2 0.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF575) Kri1 PF05178.7 gi|529078384|ref|YP_008377387.1| - 0.089 13.0 0.4 0.11 12.7 0.3 1.2 1 0 0 1 1 1 0 KRI1-like family DUF106 PF01956.11 gi|529078384|ref|YP_008377387.1| - 0.089 12.3 0.0 0.14 11.7 0.0 1.3 1 1 0 1 1 1 0 Integral membrane protein DUF106 YqzM PF14141.1 gi|529078384|ref|YP_008377387.1| - 0.091 12.5 5.3 0.27 11.0 2.7 2.2 1 1 1 2 2 2 0 YqzM-like protein Trypsin_2 PF13365.1 gi|529078385|ref|YP_008377388.1| - 7.9e-18 64.5 0.5 1.6e-17 63.6 0.4 1.5 1 0 0 1 1 1 1 Trypsin-like peptidase domain PDZ_2 PF13180.1 gi|529078385|ref|YP_008377388.1| - 1.2e-14 53.9 0.0 2.2e-14 53.1 0.0 1.4 1 0 0 1 1 1 1 PDZ domain Trypsin PF00089.21 gi|529078385|ref|YP_008377388.1| - 2.7e-12 46.7 1.9 8.4e-12 45.1 1.3 1.7 1 1 0 1 1 1 1 Trypsin UCR_Fe-S_N PF10399.4 gi|529078385|ref|YP_008377388.1| - 0.087 12.0 0.1 0.18 10.9 0.1 1.6 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TAT_signal PF10518.4 gi|529078385|ref|YP_008377388.1| - 0.1 12.6 1.4 0.31 11.1 1.0 1.9 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence PfkB PF00294.19 gi|529078386|ref|YP_008377389.1| - 1.2e-43 149.3 2.0 1.5e-43 149.0 1.4 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Imm42 PF15601.1 gi|529078387|ref|YP_008377390.1| - 0.01 15.2 0.1 0.014 14.8 0.0 1.2 1 0 0 1 1 1 0 Immunity protein 42 MarR_2 PF12802.2 gi|529078388|ref|YP_008377391.1| - 1.7e-08 33.9 0.0 3.1e-08 33.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|529078388|ref|YP_008377391.1| - 2.8e-06 26.6 0.0 2.9e-05 23.3 0.0 2.0 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|529078388|ref|YP_008377391.1| - 3.3e-06 26.7 0.0 6.4e-06 25.8 0.0 1.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|529078388|ref|YP_008377391.1| - 9.4e-06 25.1 0.1 4.6e-05 22.9 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|529078388|ref|YP_008377391.1| - 2.8e-05 23.7 0.0 4.3e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|529078388|ref|YP_008377391.1| - 5.4e-05 22.8 0.0 7.9e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|529078388|ref|YP_008377391.1| - 0.00014 21.6 0.0 0.00023 21.0 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.15 gi|529078388|ref|YP_008377391.1| - 0.0074 15.9 0.0 0.013 15.1 0.0 1.4 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family Penicillinase_R PF03965.11 gi|529078388|ref|YP_008377391.1| - 0.025 14.6 0.0 0.032 14.3 0.0 1.2 1 0 0 1 1 1 0 Penicillinase repressor HTH_23 PF13384.1 gi|529078388|ref|YP_008377391.1| - 0.031 13.9 0.0 0.052 13.2 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain PadR PF03551.9 gi|529078388|ref|YP_008377391.1| - 0.036 13.8 0.0 0.055 13.2 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Rrf2 PF02082.15 gi|529078388|ref|YP_008377391.1| - 0.042 13.9 0.0 0.084 13.0 0.0 1.4 2 0 0 2 2 2 0 Transcriptional regulator HemN_C PF06969.11 gi|529078388|ref|YP_008377391.1| - 0.057 13.4 0.1 0.66 10.0 0.0 2.2 2 0 0 2 2 2 0 HemN C-terminal domain DUF4423 PF14394.1 gi|529078388|ref|YP_008377391.1| - 0.057 12.9 0.0 0.066 12.7 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_27 PF13463.1 gi|529078388|ref|YP_008377391.1| - 0.066 13.5 0.0 0.1 12.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF4380 PF14315.1 gi|529078390|ref|YP_008377393.1| - 3.9e-69 232.8 0.0 4.4e-69 232.7 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4380) DHDPS PF00701.17 gi|529078391|ref|YP_008377394.1| - 1e-70 237.6 0.0 1.1e-70 237.4 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family Imm16 PF15565.1 gi|529078391|ref|YP_008377394.1| - 0.014 15.2 0.6 0.061 13.1 0.0 2.2 3 0 0 3 3 3 0 Immunity protein 16 PEP_mutase PF13714.1 gi|529078391|ref|YP_008377394.1| - 0.029 13.6 2.5 0.046 12.9 0.5 2.2 2 1 0 2 2 2 0 Phosphoenolpyruvate phosphomutase IU_nuc_hydro PF01156.14 gi|529078391|ref|YP_008377394.1| - 0.046 12.9 0.1 0.077 12.2 0.1 1.3 1 0 0 1 1 1 0 Inosine-uridine preferring nucleoside hydrolase AP_endonuc_2 PF01261.19 gi|529078391|ref|YP_008377394.1| - 0.054 12.7 0.3 0.4 9.9 0.2 2.2 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel ATP-grasp_5 PF13549.1 gi|529078393|ref|YP_008377396.1| - 4e-75 251.8 0.7 8.2e-75 250.8 0.5 1.6 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.1 gi|529078393|ref|YP_008377396.1| - 6.8e-54 181.2 0.8 8.3e-53 177.6 0.0 2.6 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|529078393|ref|YP_008377396.1| - 4.2e-18 65.5 1.1 1e-16 61.1 0.0 3.2 2 1 1 3 3 3 1 CoA binding domain CoA_binding PF02629.14 gi|529078393|ref|YP_008377396.1| - 6.3e-06 26.6 2.8 1.1e-05 25.7 0.1 2.8 3 1 0 3 3 3 1 CoA binding domain ATP-grasp_2 PF08442.5 gi|529078393|ref|YP_008377396.1| - 7.9e-05 22.1 0.5 0.0027 17.1 0.1 2.9 2 1 0 2 2 2 1 ATP-grasp domain Ish1 PF10281.4 gi|529078393|ref|YP_008377396.1| - 0.018 15.0 0.0 1.2 9.3 0.0 2.6 2 0 0 2 2 2 0 Putative stress-responsive nuclear envelope protein DMPK_coil PF08826.5 gi|529078394|ref|YP_008377397.1| - 1.2 9.0 6.3 7.5 6.5 0.1 3.0 4 0 0 4 4 4 0 DMPK coiled coil domain like MMR_HSR1_C PF08438.5 gi|529078395|ref|YP_008377398.1| - 1.2e-31 109.2 0.0 1.8e-31 108.6 0.0 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|529078395|ref|YP_008377398.1| - 1.1e-16 60.7 0.0 4e-16 59.0 0.0 1.9 1 1 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|529078395|ref|YP_008377398.1| - 4e-12 45.7 0.0 8.2e-12 44.7 0.0 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|529078395|ref|YP_008377398.1| - 1.1e-07 31.3 0.0 7.8e-07 28.5 0.0 2.3 3 0 0 3 3 3 1 Ferrous iron transport protein B MR_MLE PF01188.16 gi|529078395|ref|YP_008377398.1| - 0.17 12.4 3.5 0.25 11.9 0.1 3.0 4 0 0 4 4 4 0 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain GFO_IDH_MocA PF01408.17 gi|529078396|ref|YP_008377399.1| - 4.7e-26 91.6 0.2 9.3e-26 90.7 0.1 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|529078396|ref|YP_008377399.1| - 5.2e-12 45.5 0.0 1.2e-11 44.4 0.0 1.7 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_2 PF03446.10 gi|529078396|ref|YP_008377399.1| - 0.00075 19.3 0.9 0.56 10.0 0.1 2.3 1 1 1 2 2 2 2 NAD binding domain of 6-phosphogluconate dehydrogenase Malectin_like PF12819.2 gi|529078397|ref|YP_008377400.1| - 0.021 13.9 0.2 0.029 13.4 0.1 1.2 1 0 0 1 1 1 0 Carbohydrate-binding protein of the ER DEAD PF00270.24 gi|529078398|ref|YP_008377401.1| - 7.5e-24 84.1 0.0 1.1e-23 83.5 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF1998 PF09369.5 gi|529078398|ref|YP_008377401.1| - 2.3e-20 72.9 0.3 5.5e-20 71.7 0.2 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) Helicase_C PF00271.26 gi|529078398|ref|YP_008377401.1| - 6e-10 38.8 0.1 7.8e-09 35.2 0.0 2.7 4 0 0 4 4 4 1 Helicase conserved C-terminal domain Phage_tail_L PF05100.7 gi|529078399|ref|YP_008377402.1| - 0.065 12.3 1.1 0.073 12.1 0.8 1.0 1 0 0 1 1 1 0 Phage minor tail protein L DUF2403 PF10290.4 gi|529078399|ref|YP_008377402.1| - 0.55 10.4 2.9 0.89 9.7 0.2 1.9 1 1 1 2 2 2 0 Glycine-rich protein domain (DUF2403) DUF1540 PF07561.6 gi|529078399|ref|YP_008377402.1| - 9.9 6.3 8.4 18 5.4 5.8 1.6 1 1 0 1 1 1 0 Domain of Unknown Function (DUF1540) HTH_10 PF04967.7 gi|529078400|ref|YP_008377403.1| - 4.3e-16 58.2 0.2 6.4e-16 57.6 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.1 gi|529078400|ref|YP_008377403.1| - 0.012 14.9 0.0 0.02 14.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|529078400|ref|YP_008377403.1| - 0.046 13.2 0.2 0.098 12.2 0.1 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|529078400|ref|YP_008377403.1| - 0.056 13.1 0.0 0.14 11.8 0.0 1.7 1 0 0 1 1 1 0 MarR family HTH_DeoR PF08220.7 gi|529078400|ref|YP_008377403.1| - 0.072 12.6 0.1 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain adh_short PF00106.20 gi|529078403|ref|YP_008377406.1| - 1.4e-26 93.3 2.6 1.9e-26 92.9 1.8 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|529078403|ref|YP_008377406.1| - 4.6e-19 69.1 0.0 6e-19 68.7 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Epimerase PF01370.16 gi|529078403|ref|YP_008377406.1| - 3.3e-07 29.9 0.1 4.4e-07 29.5 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family KR PF08659.5 gi|529078403|ref|YP_008377406.1| - 5.4e-06 26.1 5.2 3.9e-05 23.3 3.6 2.0 1 1 0 1 1 1 1 KR domain 3HCDH_N PF02737.13 gi|529078403|ref|YP_008377406.1| - 0.0029 17.2 0.5 0.004 16.8 0.3 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|529078403|ref|YP_008377406.1| - 0.014 15.3 0.6 0.028 14.4 0.4 1.4 1 0 0 1 1 1 0 TrkA-N domain Methyltransf_31 PF13847.1 gi|529078403|ref|YP_008377406.1| - 0.032 13.8 0.0 0.09 12.3 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_18 PF12847.2 gi|529078403|ref|YP_008377406.1| - 0.045 14.3 0.4 0.1 13.1 0.3 1.7 2 0 0 2 2 2 0 Methyltransferase domain Polysacc_synt_2 PF02719.10 gi|529078403|ref|YP_008377406.1| - 0.045 12.6 0.0 0.063 12.1 0.0 1.2 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein MTS PF05175.9 gi|529078403|ref|YP_008377406.1| - 0.1 11.9 0.8 0.16 11.3 0.5 1.3 1 0 0 1 1 1 0 Methyltransferase small domain CbiA PF01656.18 gi|529078403|ref|YP_008377406.1| - 0.14 11.5 0.3 0.29 10.5 0.2 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain VCBS PF13517.1 gi|529078403|ref|YP_008377406.1| - 0.16 12.3 2.2 1.9 8.9 0.0 3.3 3 1 0 3 3 3 0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella RmlD_sub_bind PF04321.12 gi|529078403|ref|YP_008377406.1| - 0.37 9.6 2.5 1.2 7.9 1.0 2.2 2 1 0 2 2 2 0 RmlD substrate binding domain Eco57I PF07669.6 gi|529078404|ref|YP_008377407.1| - 9.3e-16 58.1 0.0 2.2e-15 56.9 0.0 1.6 1 0 0 1 1 1 1 Eco57I restriction-modification methylase N6_Mtase PF02384.11 gi|529078404|ref|YP_008377407.1| - 1.7e-15 56.9 0.0 2.7e-10 39.8 0.0 2.2 2 0 0 2 2 2 2 N-6 DNA Methylase TaqI_C PF12950.2 gi|529078404|ref|YP_008377407.1| - 1.6e-12 47.2 0.0 3.8e-12 46.0 0.0 1.7 1 1 0 1 1 1 1 TaqI-like C-terminal specificity domain Methyltransf_26 PF13659.1 gi|529078404|ref|YP_008377407.1| - 4e-11 42.9 0.0 6.3e-10 39.1 0.0 2.8 2 1 0 2 2 2 1 Methyltransferase domain UPF0020 PF01170.13 gi|529078404|ref|YP_008377407.1| - 4.6e-06 26.3 0.0 0.00092 18.8 0.0 2.4 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 HSDR_N_2 PF13588.1 gi|529078404|ref|YP_008377407.1| - 1.6e-05 24.6 0.0 4.6e-05 23.1 0.0 1.7 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) Methyltransf_31 PF13847.1 gi|529078404|ref|YP_008377407.1| - 0.076 12.6 0.0 0.21 11.1 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain ACOX PF01756.14 gi|529078404|ref|YP_008377407.1| - 0.1 12.0 0.0 2 7.7 0.0 2.5 2 0 0 2 2 2 0 Acyl-CoA oxidase Cas_Cas4 PF01930.12 gi|529078404|ref|YP_008377407.1| - 0.13 12.2 0.0 0.38 10.6 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function DUF83 HSDR_N_2 PF13588.1 gi|529078405|ref|YP_008377408.1| - 5.8e-12 45.3 0.0 1.1e-11 44.4 0.0 1.4 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) HSDR_N PF04313.9 gi|529078405|ref|YP_008377408.1| - 2.1e-07 30.8 0.6 7.2e-06 25.8 0.0 2.8 3 1 1 4 4 4 1 Type I restriction enzyme R protein N terminus (HSDR_N) Toxin_51 PF15531.1 gi|529078405|ref|YP_008377408.1| - 0.035 13.9 1.2 0.22 11.2 0.1 2.4 1 1 2 3 3 3 0 Putative toxin 51 YscO PF07321.7 gi|529078405|ref|YP_008377408.1| - 0.28 11.0 5.6 0.58 9.9 3.9 1.5 1 0 0 1 1 1 0 Type III secretion protein YscO AAA_32 PF13654.1 gi|529078406|ref|YP_008377409.1| - 0.042 12.5 0.2 0.042 12.5 0.1 1.0 1 0 0 1 1 1 0 AAA domain Phe_tRNA-synt_N PF02912.13 gi|529078406|ref|YP_008377409.1| - 0.14 11.8 0.0 0.14 11.8 0.0 1.0 1 0 0 1 1 1 0 Aminoacyl tRNA synthetase class II, N-terminal domain SHOCT PF09851.4 gi|529078407|ref|YP_008377410.1| - 4e-08 32.4 6.2 7.1e-08 31.6 4.3 1.5 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.6 gi|529078407|ref|YP_008377410.1| - 0.00072 19.2 0.3 0.00072 19.2 0.2 1.9 2 1 1 3 3 3 1 Domain of unknown function (DUF1707) AA_permease PF00324.16 gi|529078407|ref|YP_008377410.1| - 0.11 10.8 0.0 0.11 10.7 0.0 1.0 1 0 0 1 1 1 0 Amino acid permease DUF1938 PF09153.5 gi|529078407|ref|YP_008377410.1| - 0.13 12.1 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1938) GvpG PF05120.7 gi|529078407|ref|YP_008377410.1| - 0.3 10.9 2.9 0.57 10.0 2.0 1.4 1 0 0 1 1 1 0 Gas vesicle protein G OrfB_IS605 PF01385.14 gi|529078409|ref|YP_008377412.1| - 8.1e-58 195.4 0.1 1.1e-57 195.1 0.1 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|529078409|ref|YP_008377412.1| - 7.5e-19 67.1 0.2 1.4e-18 66.2 0.1 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|529078409|ref|YP_008377412.1| - 0.0057 15.9 0.0 0.013 14.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain FxsA PF04186.8 gi|529078410|ref|YP_008377413.1| - 2e-34 117.7 8.8 2.4e-34 117.4 6.1 1.1 1 0 0 1 1 1 1 FxsA cytoplasmic membrane protein GCHY-1 PF02649.9 gi|529078411|ref|YP_008377414.1| - 1.9e-84 283.1 0.3 2.2e-84 283.0 0.2 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 Limkain-b1 PF11608.3 gi|529078411|ref|YP_008377414.1| - 0.00018 21.1 0.0 0.00045 19.9 0.0 1.7 1 0 0 1 1 1 1 Limkain b1 DUF1770 PF08589.5 gi|529078411|ref|YP_008377414.1| - 0.042 14.4 1.4 0.085 13.4 1.0 1.7 1 1 0 1 1 1 0 Fungal protein of unknown function (DUF1770) Methyltransf_11 PF08241.7 gi|529078412|ref|YP_008377415.1| - 2.6e-24 85.5 0.0 5.3e-24 84.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|529078412|ref|YP_008377415.1| - 3e-18 65.8 0.0 3.6e-18 65.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|529078412|ref|YP_008377415.1| - 5.6e-15 55.5 0.2 1.8e-14 53.9 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|529078412|ref|YP_008377415.1| - 1.5e-14 54.0 0.0 2e-14 53.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|529078412|ref|YP_008377415.1| - 2.2e-11 43.3 0.0 4e-11 42.4 0.0 1.4 1 1 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|529078412|ref|YP_008377415.1| - 3.1e-11 43.8 0.2 9e-11 42.3 0.0 1.7 2 1 0 2 2 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|529078412|ref|YP_008377415.1| - 7.3e-11 42.1 2.8 9.6e-11 41.7 0.9 2.0 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|529078412|ref|YP_008377415.1| - 5.4e-10 39.6 0.0 9.2e-10 38.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.6 gi|529078412|ref|YP_008377415.1| - 5.6e-08 31.8 0.0 7.1e-08 31.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) PCMT PF01135.14 gi|529078412|ref|YP_008377415.1| - 0.00026 20.6 0.0 0.00034 20.2 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_8 PF05148.10 gi|529078412|ref|YP_008377415.1| - 0.004 16.8 0.0 0.035 13.7 0.0 2.0 1 1 0 1 1 1 1 Hypothetical methyltransferase CMAS PF02353.15 gi|529078412|ref|YP_008377415.1| - 0.005 15.9 0.0 0.0066 15.5 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase GCD14 PF08704.5 gi|529078412|ref|YP_008377415.1| - 0.0051 16.3 0.0 0.0066 15.9 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit N6_N4_Mtase PF01555.13 gi|529078412|ref|YP_008377415.1| - 0.009 15.5 0.0 0.61 9.5 0.0 2.1 2 0 0 2 2 2 1 DNA methylase Methyltransf_32 PF13679.1 gi|529078412|ref|YP_008377415.1| - 0.013 15.1 0.0 0.019 14.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.9 gi|529078412|ref|YP_008377415.1| - 0.016 14.5 0.0 0.028 13.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain MetW PF07021.7 gi|529078412|ref|YP_008377415.1| - 0.031 13.6 0.0 0.051 12.9 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW PrmA PF06325.8 gi|529078412|ref|YP_008377415.1| - 0.037 13.1 0.1 0.06 12.4 0.1 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) NNMT_PNMT_TEMT PF01234.12 gi|529078412|ref|YP_008377415.1| - 0.15 11.0 0.0 0.62 8.9 0.0 1.8 2 0 0 2 2 2 0 NNMT/PNMT/TEMT family ABC_tran PF00005.22 gi|529078413|ref|YP_008377416.1| - 2.3e-33 115.3 0.0 3.8e-33 114.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|529078413|ref|YP_008377416.1| - 7e-10 39.3 0.0 0.00014 21.9 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|529078413|ref|YP_008377416.1| - 2.8e-05 23.5 0.2 7e-05 22.2 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|529078413|ref|YP_008377416.1| - 0.00055 20.3 0.1 0.0011 19.2 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|529078413|ref|YP_008377416.1| - 0.00086 19.3 0.2 0.004 17.1 0.0 1.9 1 1 1 2 2 2 1 AAA ATPase domain AAA_15 PF13175.1 gi|529078413|ref|YP_008377416.1| - 0.0011 18.1 0.0 0.17 10.9 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain DUF258 PF03193.11 gi|529078413|ref|YP_008377416.1| - 0.0029 16.8 0.1 0.0055 15.9 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|529078413|ref|YP_008377416.1| - 0.0051 16.9 0.0 0.035 14.2 0.0 2.1 1 1 0 1 1 1 1 AAA domain cobW PF02492.14 gi|529078413|ref|YP_008377416.1| - 0.021 14.2 0.1 0.044 13.2 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.1 gi|529078413|ref|YP_008377416.1| - 0.021 14.5 0.1 0.06 13.1 0.1 1.8 1 0 0 1 1 1 0 Part of AAA domain UPF0079 PF02367.12 gi|529078413|ref|YP_008377416.1| - 0.022 14.4 0.1 0.046 13.3 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_17 PF13207.1 gi|529078413|ref|YP_008377416.1| - 0.04 14.7 0.3 0.12 13.1 0.2 2.1 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|529078413|ref|YP_008377416.1| - 0.043 13.7 0.8 0.22 11.4 0.6 2.4 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_33 PF13671.1 gi|529078413|ref|YP_008377416.1| - 0.057 13.3 0.0 0.13 12.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|529078413|ref|YP_008377416.1| - 0.069 12.5 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA PF00004.24 gi|529078413|ref|YP_008377416.1| - 0.083 13.0 0.0 0.42 10.8 0.0 2.1 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.1 gi|529078413|ref|YP_008377416.1| - 0.097 12.6 0.0 0.31 10.9 0.0 1.8 1 1 1 2 2 2 0 Putative exonuclease SbcCD, C subunit MobB PF03205.9 gi|529078413|ref|YP_008377416.1| - 0.11 12.1 0.0 0.25 11.0 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.7 gi|529078413|ref|YP_008377416.1| - 0.11 12.1 0.0 0.24 11.0 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Mg_chelatase PF01078.16 gi|529078413|ref|YP_008377416.1| - 0.12 11.5 0.0 0.24 10.5 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ABC2_membrane PF01061.19 gi|529078414|ref|YP_008377417.1| - 1.2e-39 135.7 16.5 1.5e-39 135.3 11.4 1.1 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|529078414|ref|YP_008377417.1| - 5.1e-22 78.3 22.3 5.1e-22 78.3 15.5 1.8 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|529078414|ref|YP_008377417.1| - 1.2e-10 40.9 15.4 1.5e-10 40.6 10.6 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|529078414|ref|YP_008377417.1| - 1.3e-07 30.8 19.4 2.6e-07 29.8 13.4 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|529078414|ref|YP_008377417.1| - 0.00068 18.9 9.1 0.00068 18.9 6.3 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein GIY-YIG PF01541.19 gi|529078415|ref|YP_008377418.1| - 1.7e-13 50.7 0.0 1.9e-13 50.5 0.0 1.0 1 0 0 1 1 1 1 GIY-YIG catalytic domain T5orf172 PF10544.4 gi|529078415|ref|YP_008377418.1| - 0.036 14.4 0.0 0.042 14.2 0.0 1.2 1 0 0 1 1 1 0 T5orf172 domain MUG113 PF13455.1 gi|529078415|ref|YP_008377418.1| - 0.11 12.9 0.0 0.15 12.5 0.0 1.4 1 1 0 1 1 1 0 Meiotically up-regulated gene 113 DZR PF12773.2 gi|529078416|ref|YP_008377419.1| - 0.0021 17.8 0.5 0.0026 17.5 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|529078416|ref|YP_008377419.1| - 0.0075 15.4 0.4 2.5 7.4 0.0 2.1 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|529078416|ref|YP_008377419.1| - 0.013 14.9 1.5 0.048 13.1 1.1 1.8 1 1 0 1 1 1 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|529078416|ref|YP_008377419.1| - 0.032 14.5 0.7 2.2 8.6 0.0 2.1 2 0 0 2 2 2 0 Restriction alleviation protein Lar Nudix_N_2 PF14803.1 gi|529078416|ref|YP_008377419.1| - 0.05 13.2 1.8 0.17 11.5 1.2 1.9 1 1 0 1 1 1 0 Nudix N-terminal Zn-ribbon_8 PF09723.5 gi|529078416|ref|YP_008377419.1| - 0.17 11.8 4.0 1.5 8.8 2.6 2.0 1 1 0 1 1 1 0 Zinc ribbon domain YhfH PF14149.1 gi|529078416|ref|YP_008377419.1| - 0.22 11.3 0.8 0.4 10.5 0.1 1.7 2 0 0 2 2 2 0 YhfH-like protein Zn_Tnp_IS1595 PF12760.2 gi|529078416|ref|YP_008377419.1| - 0.23 11.3 4.1 1.3 8.8 0.1 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Ogr_Delta PF04606.7 gi|529078416|ref|YP_008377419.1| - 0.25 11.0 4.2 2.6 7.7 0.5 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-NADH-PPase PF09297.6 gi|529078416|ref|YP_008377419.1| - 0.71 9.4 4.4 2.8 7.5 0.1 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain UPF0547 PF10571.4 gi|529078416|ref|YP_008377419.1| - 2.2 8.0 6.0 12 5.6 0.5 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 PhnA_Zn_Ribbon PF08274.7 gi|529078416|ref|YP_008377419.1| - 4 7.3 5.3 83 3.0 3.9 2.1 1 1 0 1 1 1 0 PhnA Zinc-Ribbon Prim_Zn_Ribbon PF08273.7 gi|529078416|ref|YP_008377419.1| - 4.5 7.4 6.0 12 6.0 0.4 2.2 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase AIRC PF00731.15 gi|529078417|ref|YP_008377420.1| - 8.5e-17 60.8 4.0 8.5e-17 60.8 2.8 1.9 2 0 0 2 2 2 1 AIR carboxylase Histone PF00125.19 gi|529078418|ref|YP_008377421.1| - 0.00017 21.6 0.1 0.00017 21.6 0.0 1.3 1 1 0 1 1 1 1 Core histone H2A/H2B/H3/H4 DUF1931 PF09123.6 gi|529078418|ref|YP_008377421.1| - 0.0016 18.4 0.9 0.0017 18.2 0.6 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) CBFD_NFYB_HMF PF00808.18 gi|529078418|ref|YP_008377421.1| - 0.0027 17.7 0.0 0.0033 17.4 0.0 1.4 1 1 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone CP12 PF02672.10 gi|529078418|ref|YP_008377421.1| - 0.15 12.5 1.0 0.18 12.2 0.7 1.2 1 1 0 1 1 1 0 CP12 domain TFIID_20kDa PF03847.8 gi|529078418|ref|YP_008377421.1| - 0.17 12.1 0.9 0.2 11.9 0.6 1.5 1 1 0 1 1 1 0 Transcription initiation factor TFIID subunit A DUF2270 PF10028.4 gi|529078419|ref|YP_008377422.1| - 1.4e-67 226.7 1.5 1.7e-67 226.5 1.0 1.0 1 0 0 1 1 1 1 Predicted integral membrane protein (DUF2270) Acyl_transf_3 PF01757.17 gi|529078419|ref|YP_008377422.1| - 0.07 11.9 1.8 1.3 7.7 0.1 2.2 2 0 0 2 2 2 0 Acyltransferase family EIIC-GAT PF03611.9 gi|529078419|ref|YP_008377422.1| - 0.1 11.3 0.9 1 8.0 0.0 2.0 2 0 0 2 2 2 0 PTS system sugar-specific permease component PGM_PMM_I PF02878.11 gi|529078420|ref|YP_008377423.1| - 2.3e-32 111.3 0.0 3.8e-32 110.6 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.11 gi|529078420|ref|YP_008377423.1| - 1.3e-17 63.8 0.0 2.3e-17 63.0 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.11 gi|529078420|ref|YP_008377423.1| - 3.6e-17 62.6 0.1 8.5e-17 61.3 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|529078420|ref|YP_008377423.1| - 1.6e-11 44.0 0.1 5.4e-11 42.3 0.1 1.9 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain KaiC PF06745.8 gi|529078421|ref|YP_008377424.1| - 0.00042 19.4 0.2 0.00055 19.1 0.1 1.1 1 0 0 1 1 1 1 KaiC DUF2391 PF09622.5 gi|529078422|ref|YP_008377425.1| - 6.5e-05 22.2 0.6 8.7e-05 21.7 0.4 1.2 1 0 0 1 1 1 1 Putative integral membrane protein (DUF2391) tRNA_NucTransf2 PF09249.6 gi|529078423|ref|YP_008377426.1| - 9.8e-42 141.4 0.0 1.6e-41 140.7 0.0 1.3 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|529078423|ref|YP_008377426.1| - 4.3e-13 49.4 0.1 1.4e-12 47.7 0.0 1.9 2 0 0 2 2 2 1 Nucleotidyltransferase domain Hist_deacetyl PF00850.14 gi|529078424|ref|YP_008377427.1| - 7.6e-81 271.7 0.0 9.1e-81 271.5 0.0 1.0 1 0 0 1 1 1 1 Histone deacetylase domain TRM PF02005.11 gi|529078424|ref|YP_008377427.1| - 0.18 10.6 0.0 0.26 10.1 0.0 1.1 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase CBFD_NFYB_HMF PF00808.18 gi|529078425|ref|YP_008377428.1| - 1.9e-18 66.2 1.6 1.1e-12 47.7 0.2 2.0 2 0 0 2 2 2 2 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|529078425|ref|YP_008377428.1| - 9.4e-12 44.8 3.3 1.7e-07 31.2 0.3 2.1 2 0 0 2 2 2 2 Core histone H2A/H2B/H3/H4 CENP-S PF15630.1 gi|529078425|ref|YP_008377428.1| - 0.00025 21.1 0.8 0.0014 18.7 0.1 2.0 2 0 0 2 2 2 1 Kinetochore component CENP-S tRNA_anti-codon PF01336.20 gi|529078426|ref|YP_008377429.1| - 6.8e-28 96.3 12.7 1.7e-11 43.7 0.4 3.9 4 0 0 4 4 4 3 OB-fold nucleic acid binding domain Rep_fac-A_C PF08646.5 gi|529078426|ref|YP_008377429.1| - 0.0031 17.2 0.0 3.9 7.1 0.0 3.4 3 0 0 3 3 3 2 Replication factor-A C terminal domain NfeD PF01957.13 gi|529078426|ref|YP_008377429.1| - 0.15 12.1 2.0 5.6 7.0 0.3 2.8 2 0 0 2 2 2 0 NfeD-like C-terminal, partner-binding TAT_signal PF10518.4 gi|529078427|ref|YP_008377430.1| - 0.00073 19.3 1.5 0.0015 18.3 1.0 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence DUF1180 PF06679.7 gi|529078427|ref|YP_008377430.1| - 0.39 10.5 4.5 2.4 7.9 2.6 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1180) Herpes_LMP1 PF05297.6 gi|529078427|ref|YP_008377430.1| - 2 7.2 12.7 2.3 7.0 8.8 1.2 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) Phosphodiest PF01663.17 gi|529078428|ref|YP_008377431.1| - 2.8e-35 122.3 0.0 8.8e-35 120.6 0.0 1.7 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.13 gi|529078428|ref|YP_008377431.1| - 0.16 11.3 0.0 0.39 10.0 0.0 1.6 2 0 0 2 2 2 0 Metalloenzyme superfamily Glycos_transf_2 PF00535.21 gi|529078429|ref|YP_008377432.1| - 2.5e-25 89.1 0.0 3.2e-25 88.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|529078429|ref|YP_008377432.1| - 1.7e-09 37.8 0.5 3e-09 37.0 0.3 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|529078429|ref|YP_008377432.1| - 0.00068 19.8 0.0 0.0022 18.2 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase family 2 NTP_transf_3 PF12804.2 gi|529078429|ref|YP_008377432.1| - 0.015 15.3 0.2 0.037 14.1 0.1 1.6 1 1 0 2 2 2 0 MobA-like NTP transferase domain DUF2304 PF10066.4 gi|529078430|ref|YP_008377433.1| - 5.5e-11 42.3 0.1 5.8e-11 42.2 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2304) 7tm_7 PF08395.7 gi|529078430|ref|YP_008377433.1| - 0.28 10.1 1.8 0.29 10.0 0.2 1.6 1 1 1 2 2 2 0 7tm Chemosensory receptor MHYT PF03707.11 gi|529078430|ref|YP_008377433.1| - 0.36 10.9 2.7 0.35 11.0 0.2 2.1 1 1 1 2 2 2 0 Bacterial signalling protein N terminal repeat DUF998 PF06197.8 gi|529078430|ref|YP_008377433.1| - 0.48 9.6 8.3 0.15 11.3 2.8 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF998) DUF4234 PF14018.1 gi|529078430|ref|YP_008377433.1| - 8 6.2 6.6 14 5.5 0.1 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4234) Polysacc_deac_1 PF01522.16 gi|529078431|ref|YP_008377434.1| - 1.3e-24 86.1 0.0 2e-24 85.6 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF3473 PF11959.3 gi|529078431|ref|YP_008377434.1| - 5.5e-18 64.6 0.0 7.1e-18 64.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3473) Glyco_hydro_57 PF03065.10 gi|529078431|ref|YP_008377434.1| - 0.079 11.8 0.0 0.11 11.3 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 57 UPF0104 PF03706.8 gi|529078432|ref|YP_008377435.1| - 1.5e-21 76.9 38.3 1.9e-21 76.5 26.5 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) MTP18 PF10558.4 gi|529078432|ref|YP_008377435.1| - 0.083 12.7 0.1 0.36 10.6 0.0 2.1 1 1 1 2 2 2 0 Mitochondrial 18 KDa protein (MTP18) PMT_2 PF13231.1 gi|529078433|ref|YP_008377436.1| - 3.8e-13 49.6 9.0 3.8e-13 49.6 6.2 3.6 3 1 1 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.13 gi|529078433|ref|YP_008377436.1| - 1.8e-09 37.3 12.2 1.8e-09 37.3 8.4 2.4 1 1 1 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF2029 PF09594.5 gi|529078433|ref|YP_008377436.1| - 0.001 18.6 35.0 0.001 18.6 24.3 3.6 4 0 0 4 4 4 2 Protein of unknown function (DUF2029) DUF4131 PF13567.1 gi|529078433|ref|YP_008377436.1| - 0.37 10.1 0.0 0.37 10.1 0.0 5.5 3 2 2 5 5 5 0 Domain of unknown function (DUF4131) DUF309 PF03745.9 gi|529078434|ref|YP_008377437.1| - 2.1e-15 55.9 0.1 3.1e-15 55.3 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF309) CBS PF00571.23 gi|529078435|ref|YP_008377438.1| - 2e-24 85.0 1.4 1.7e-12 46.8 0.0 2.1 2 0 0 2 2 2 2 CBS domain GATase_5 PF13507.1 gi|529078436|ref|YP_008377439.1| - 4.8e-46 156.7 0.0 6e-46 156.4 0.0 1.0 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|529078436|ref|YP_008377439.1| - 1e-08 34.8 0.0 1.3e-08 34.5 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|529078436|ref|YP_008377439.1| - 1.4e-06 28.0 0.0 2.6e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.8 gi|529078436|ref|YP_008377439.1| - 0.0016 17.9 0.1 0.0034 16.8 0.1 1.6 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.19 gi|529078436|ref|YP_008377439.1| - 0.0016 17.8 0.1 0.0025 17.2 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family SNO PF01174.14 gi|529078436|ref|YP_008377439.1| - 0.021 14.4 0.0 0.032 13.8 0.0 1.2 1 0 0 1 1 1 0 SNO glutamine amidotransferase family DUF4066 PF13278.1 gi|529078436|ref|YP_008377439.1| - 0.09 12.0 0.0 0.12 11.6 0.0 1.2 1 0 0 1 1 1 0 Putative amidotransferase PurS PF02700.9 gi|529078437|ref|YP_008377440.1| - 8.3e-24 83.3 0.0 9e-24 83.2 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase AP_endonuc_2 PF01261.19 gi|529078437|ref|YP_008377440.1| - 0.012 14.9 0.2 0.014 14.6 0.2 1.0 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel AP2 PF00847.15 gi|529078437|ref|YP_008377440.1| - 2.1 8.5 6.1 1.1 9.5 0.2 2.1 1 1 1 2 2 2 0 AP2 domain Oxidored_q6 PF01058.17 gi|529078439|ref|YP_008377442.1| - 2.3e-28 98.4 0.4 3.1e-28 97.9 0.2 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit DUF116 PF01976.12 gi|529078439|ref|YP_008377442.1| - 0.11 11.9 0.0 0.17 11.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF116 Complex1_30kDa PF00329.14 gi|529078440|ref|YP_008377443.1| - 5.9e-27 93.9 0.0 8.1e-27 93.4 0.0 1.2 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Peripla_BP_4 PF13407.1 gi|529078440|ref|YP_008377443.1| - 0.034 13.4 0.0 0.046 13.0 0.0 1.1 1 0 0 1 1 1 0 Periplasmic binding protein domain Peptidase_C70 PF12385.3 gi|529078440|ref|YP_008377443.1| - 0.11 12.1 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 Papain-like cysteine protease AvrRpt2 Complex1_49kDa PF00346.14 gi|529078441|ref|YP_008377444.1| - 1.9e-45 154.9 0.0 6.5e-43 146.6 0.0 2.4 2 1 0 2 2 2 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.14 gi|529078441|ref|YP_008377444.1| - 1.4e-13 50.5 0.3 1.9e-10 40.1 0.0 2.8 3 1 0 3 3 3 2 Nickel-dependent hydrogenase A2M_recep PF07677.9 gi|529078441|ref|YP_008377444.1| - 0.084 13.0 0.0 8.7 6.6 0.0 2.3 2 0 0 2 2 2 0 A-macroglobulin receptor DUF2746 PF10874.3 gi|529078441|ref|YP_008377444.1| - 0.11 12.6 5.3 1.6 8.9 0.2 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2746) NADHdh PF00146.16 gi|529078442|ref|YP_008377445.1| - 4.2e-49 167.3 7.7 5.2e-49 166.9 5.3 1.1 1 0 0 1 1 1 1 NADH dehydrogenase Fer4_7 PF12838.2 gi|529078443|ref|YP_008377446.1| - 2.1e-13 50.3 23.1 7e-11 42.3 8.5 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|529078443|ref|YP_008377446.1| - 8.2e-13 47.3 13.7 7.8e-08 31.6 1.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|529078443|ref|YP_008377446.1| - 5.9e-11 42.0 21.9 1.2e-08 34.6 8.3 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|529078443|ref|YP_008377446.1| - 2.1e-10 40.0 14.4 1.1e-06 28.2 3.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|529078443|ref|YP_008377446.1| - 4.4e-09 36.9 5.7 1.6e-05 25.5 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|529078443|ref|YP_008377446.1| - 6.5e-09 35.9 11.5 1e-08 35.2 7.9 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|529078443|ref|YP_008377446.1| - 1.3e-06 28.0 12.7 0.0031 17.3 1.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|529078443|ref|YP_008377446.1| - 1.4e-06 28.2 33.5 0.00028 20.8 9.4 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|529078443|ref|YP_008377446.1| - 5.7e-06 26.0 9.5 1e-05 25.2 6.6 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|529078443|ref|YP_008377446.1| - 0.00011 22.5 6.5 0.12 12.8 1.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|529078443|ref|YP_008377446.1| - 0.00032 20.7 12.9 0.026 14.8 1.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|529078443|ref|YP_008377446.1| - 0.00037 20.7 12.7 0.016 15.5 1.1 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|529078443|ref|YP_008377446.1| - 0.0006 20.1 18.4 0.0045 17.4 3.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|529078443|ref|YP_008377446.1| - 0.0046 16.8 4.7 0.017 14.9 3.3 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|529078443|ref|YP_008377446.1| - 0.011 16.3 16.2 0.29 11.7 2.4 2.9 1 1 1 2 2 2 0 4Fe-4S single cluster domain DUF1540 PF07561.6 gi|529078443|ref|YP_008377446.1| - 0.3 11.1 5.9 1.7 8.7 4.1 2.1 1 1 0 1 1 1 0 Domain of Unknown Function (DUF1540) DUF3079 PF11278.3 gi|529078443|ref|YP_008377446.1| - 2 8.0 7.0 3.1 7.4 1.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3079) Fer4_13 PF13370.1 gi|529078443|ref|YP_008377446.1| - 7.2 7.0 15.0 10 6.6 1.7 2.9 2 1 1 3 3 3 0 4Fe-4S single cluster domain HycI PF01750.13 gi|529078444|ref|YP_008377447.1| - 1.3e-15 57.1 0.0 1.7e-15 56.7 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase maturation protease Oxidored_q1 PF00361.15 gi|529078445|ref|YP_008377448.1| - 6.6e-56 189.5 2.9 6.6e-56 189.5 2.0 1.6 2 0 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q3 PF00499.15 gi|529078446|ref|YP_008377449.1| - 1.7e-07 31.1 4.8 2.1e-07 30.7 3.3 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF4040 PF13244.1 gi|529078446|ref|YP_008377449.1| - 4.6e-07 29.7 15.5 4.6e-07 29.7 10.8 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4040) DUF4401 PF14351.1 gi|529078446|ref|YP_008377449.1| - 0.0014 17.6 11.9 0.0016 17.5 8.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4401) Oxidored_q2 PF00420.19 gi|529078446|ref|YP_008377449.1| - 2.3 7.8 16.4 0.09 12.3 6.5 2.0 2 0 0 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Oxidored_q2 PF00420.19 gi|529078447|ref|YP_008377450.1| - 2.2e-12 46.3 3.9 2.6e-12 46.1 2.7 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L PetG PF02529.10 gi|529078447|ref|YP_008377450.1| - 8.1 6.0 7.5 33 4.1 5.2 2.0 1 1 0 1 1 1 0 Cytochrome B6-F complex subunit 5 Oxidored_q1 PF00361.15 gi|529078448|ref|YP_008377451.1| - 2.8e-67 226.8 6.3 5.4e-67 225.9 4.4 1.5 1 0 0 1 1 1 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|529078448|ref|YP_008377451.1| - 2.1e-07 30.4 0.1 8.6e-07 28.4 0.1 2.1 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NPCBM_assoc PF10633.4 gi|529078449|ref|YP_008377452.1| - 3.9e-09 36.4 16.0 0.00024 21.0 0.9 5.8 6 1 0 6 6 6 2 NPCBM-associated, NEW3 domain of alpha-galactosidase A2M_N PF01835.14 gi|529078449|ref|YP_008377452.1| - 1.4e-05 25.3 1.7 2 8.7 0.1 4.2 1 1 1 3 3 3 2 MG2 domain DUF4625 PF15418.1 gi|529078449|ref|YP_008377452.1| - 6.3e-05 23.1 0.2 0.58 10.2 0.0 2.6 2 0 0 2 2 2 2 Domain of unknown function (DUF4625) FixG_C PF11614.3 gi|529078449|ref|YP_008377452.1| - 0.00049 20.1 2.2 2.5 8.2 0.0 3.8 3 2 1 4 4 4 2 IG-like fold at C-terminal of FixG, putative oxidoreductase Transglut_N PF00868.15 gi|529078449|ref|YP_008377452.1| - 0.00057 19.9 0.8 0.91 9.5 0.0 4.0 3 2 0 4 4 4 1 Transglutaminase family DUF1034 PF06280.7 gi|529078449|ref|YP_008377452.1| - 0.00084 19.7 11.2 0.082 13.3 0.4 4.5 2 2 1 4 4 4 2 Fn3-like domain (DUF1034) Fn3-like PF14310.1 gi|529078449|ref|YP_008377452.1| - 0.007 16.2 0.1 1.9 8.5 0.0 3.7 3 0 0 3 3 3 1 Fibronectin type III-like domain DUF916 PF06030.7 gi|529078449|ref|YP_008377452.1| - 0.0072 16.1 0.1 5.8 6.7 0.0 3.9 3 1 0 3 3 3 1 Bacterial protein of unknown function (DUF916) DUF4354 PF14263.1 gi|529078449|ref|YP_008377452.1| - 0.1 12.2 0.0 15 5.2 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4354) Arg_tRNA_synt_N PF03485.11 gi|529078449|ref|YP_008377452.1| - 0.11 13.0 0.0 9.5 6.8 0.0 2.5 2 0 0 2 2 2 0 Arginyl tRNA synthetase N terminal domain DUF3682 PF12446.3 gi|529078449|ref|YP_008377452.1| - 3.1 8.0 12.3 0.24 11.7 4.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3682) DUF11 PF01345.13 gi|529078449|ref|YP_008377452.1| - 4.6 7.3 18.5 0.95 9.5 0.9 5.2 5 1 1 6 6 6 0 Domain of unknown function DUF11 Formyl_trans_N PF00551.14 gi|529078450|ref|YP_008377453.1| - 1.9e-43 148.1 0.0 2.7e-43 147.6 0.0 1.2 1 0 0 1 1 1 1 Formyl transferase ACT_6 PF13740.1 gi|529078450|ref|YP_008377453.1| - 1.1e-10 41.1 0.8 2.6e-10 39.8 0.5 1.6 1 0 0 1 1 1 1 ACT domain ACT PF01842.20 gi|529078450|ref|YP_008377453.1| - 5.6e-08 32.1 1.2 3.3e-07 29.6 0.3 2.6 3 0 0 3 3 3 1 ACT domain ACT_4 PF13291.1 gi|529078450|ref|YP_008377453.1| - 0.0012 19.1 0.1 0.0031 17.8 0.1 1.6 1 0 0 1 1 1 1 ACT domain Glyco_transf_28 PF03033.15 gi|529078450|ref|YP_008377453.1| - 0.007 16.1 0.0 0.02 14.6 0.0 1.8 2 0 0 2 2 2 1 Glycosyltransferase family 28 N-terminal domain FlgN PF05130.7 gi|529078451|ref|YP_008377454.1| - 0.083 13.1 0.1 0.096 12.9 0.1 1.0 1 0 0 1 1 1 0 FlgN protein SAICAR_synt PF01259.13 gi|529078452|ref|YP_008377455.1| - 2.8e-17 62.6 0.0 8.2e-17 61.1 0.0 1.6 1 1 0 1 1 1 1 SAICAR synthetase AAA PF00004.24 gi|529078453|ref|YP_008377456.1| - 1.1e-38 132.3 0.1 3.6e-38 130.7 0.0 1.9 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|529078453|ref|YP_008377456.1| - 7e-07 30.0 0.1 7e-07 30.0 0.1 3.1 2 2 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|529078453|ref|YP_008377456.1| - 1.1e-06 28.4 0.0 6.2e-06 25.9 0.0 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|529078453|ref|YP_008377456.1| - 1.6e-05 24.9 6.6 0.00071 19.6 2.9 3.7 1 1 1 2 2 2 1 AAA ATPase domain AAA_33 PF13671.1 gi|529078453|ref|YP_008377456.1| - 6.1e-05 22.9 0.0 0.0003 20.6 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|529078453|ref|YP_008377456.1| - 0.00012 22.4 1.2 0.0011 19.3 0.0 2.7 3 0 0 3 3 2 1 AAA domain AAA_22 PF13401.1 gi|529078453|ref|YP_008377456.1| - 0.00019 21.5 0.3 0.0037 17.3 0.0 2.7 2 1 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|529078453|ref|YP_008377456.1| - 0.00047 19.2 0.0 0.0018 17.3 0.0 2.1 2 1 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus TIP49 PF06068.8 gi|529078453|ref|YP_008377456.1| - 0.00068 18.4 0.0 0.0028 16.4 0.0 1.9 2 0 0 2 2 2 1 TIP49 C-terminus AAA_28 PF13521.1 gi|529078453|ref|YP_008377456.1| - 0.00074 19.5 0.1 0.0028 17.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|529078453|ref|YP_008377456.1| - 0.0017 17.8 0.0 0.004 16.5 0.0 1.7 1 1 0 1 1 1 1 IstB-like ATP binding protein AAA_2 PF07724.9 gi|529078453|ref|YP_008377456.1| - 0.0023 17.8 0.0 0.0057 16.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) MMR_HSR1 PF01926.18 gi|529078453|ref|YP_008377456.1| - 0.0029 17.5 0.0 0.0085 16.0 0.0 1.8 1 0 0 1 1 1 1 50S ribosome-binding GTPase AAA_19 PF13245.1 gi|529078453|ref|YP_008377456.1| - 0.0049 16.6 0.0 0.011 15.4 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain SKI PF01202.17 gi|529078453|ref|YP_008377456.1| - 0.0049 16.7 0.0 0.014 15.3 0.0 1.8 1 0 0 1 1 1 1 Shikimate kinase DUF815 PF05673.8 gi|529078453|ref|YP_008377456.1| - 0.0058 15.5 0.0 0.01 14.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_25 PF13481.1 gi|529078453|ref|YP_008377456.1| - 0.0069 15.8 0.1 0.023 14.1 0.0 2.0 1 1 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|529078453|ref|YP_008377456.1| - 0.0072 15.2 0.0 0.014 14.2 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein Cytidylate_kin2 PF13189.1 gi|529078453|ref|YP_008377456.1| - 0.0095 15.8 0.0 0.027 14.3 0.0 1.7 1 0 0 1 1 1 1 Cytidylate kinase-like family Mg_chelatase PF01078.16 gi|529078453|ref|YP_008377456.1| - 0.012 14.7 0.0 0.024 13.7 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Sigma54_activ_2 PF14532.1 gi|529078453|ref|YP_008377456.1| - 0.014 15.4 0.0 0.045 13.8 0.0 1.8 2 0 0 2 2 1 0 Sigma-54 interaction domain ABC_tran PF00005.22 gi|529078453|ref|YP_008377456.1| - 0.022 15.0 0.0 0.065 13.5 0.0 1.9 1 0 0 1 1 1 0 ABC transporter AAA_3 PF07726.6 gi|529078453|ref|YP_008377456.1| - 0.024 14.2 0.0 0.048 13.2 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|529078453|ref|YP_008377456.1| - 0.026 14.1 0.1 2.7 7.6 0.0 3.0 2 1 1 3 3 3 0 NACHT domain AAA_11 PF13086.1 gi|529078453|ref|YP_008377456.1| - 0.042 13.4 0.0 0.09 12.3 0.0 1.5 1 1 0 1 1 1 0 AAA domain ResIII PF04851.10 gi|529078453|ref|YP_008377456.1| - 0.051 13.3 0.0 0.079 12.7 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_14 PF13173.1 gi|529078453|ref|YP_008377456.1| - 0.051 13.4 0.0 0.18 11.7 0.0 1.9 2 0 0 2 2 1 0 AAA domain RNA_helicase PF00910.17 gi|529078453|ref|YP_008377456.1| - 0.055 13.6 0.0 0.13 12.4 0.0 1.7 1 0 0 1 1 1 0 RNA helicase Zeta_toxin PF06414.7 gi|529078453|ref|YP_008377456.1| - 0.074 12.1 0.0 0.16 11.0 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_24 PF13479.1 gi|529078453|ref|YP_008377456.1| - 0.1 12.1 0.0 0.27 10.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain Lactamase_B_2 PF12706.2 gi|529078454|ref|YP_008377457.1| - 3.9e-19 68.9 0.0 5.5e-19 68.4 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|529078454|ref|YP_008377457.1| - 4.2e-12 46.1 3.1 7.1e-12 45.3 2.2 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|529078454|ref|YP_008377457.1| - 0.005 16.5 0.0 0.008 15.9 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain TrmB PF01978.14 gi|529078455|ref|YP_008377458.1| - 6.4e-05 22.5 0.0 8.7e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|529078455|ref|YP_008377458.1| - 0.00024 20.8 0.2 0.00043 20.0 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|529078455|ref|YP_008377458.1| - 0.0004 19.9 0.0 0.00066 19.2 0.0 1.5 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|529078455|ref|YP_008377458.1| - 0.0064 16.1 0.0 0.0097 15.5 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|529078455|ref|YP_008377458.1| - 0.013 15.1 0.1 0.022 14.4 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TetR_N PF00440.18 gi|529078455|ref|YP_008377458.1| - 0.02 14.5 0.0 0.035 13.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_10 PF04967.7 gi|529078455|ref|YP_008377458.1| - 0.034 13.7 0.0 0.055 13.0 0.0 1.3 1 0 0 1 1 1 0 HTH DNA binding domain Cyclase_polyket PF04673.7 gi|529078455|ref|YP_008377458.1| - 0.036 14.0 0.0 0.044 13.8 0.0 1.1 1 0 0 1 1 1 0 Polyketide synthesis cyclase HTH_28 PF13518.1 gi|529078455|ref|YP_008377458.1| - 0.044 13.7 0.0 0.09 12.8 0.0 1.6 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|529078455|ref|YP_008377458.1| - 0.064 12.6 0.1 0.27 10.6 0.0 2.0 2 1 0 2 2 2 0 Winged helix-turn-helix DNA-binding Polysacc_synt_C PF14667.1 gi|529078459|ref|YP_008377462.1| - 0.0051 16.6 3.4 0.0058 16.4 2.3 1.0 1 0 0 1 1 1 1 Polysaccharide biosynthesis C-terminal domain AA_permease PF00324.16 gi|529078459|ref|YP_008377462.1| - 0.022 13.0 1.1 0.025 12.9 0.8 1.0 1 0 0 1 1 1 0 Amino acid permease DUF4233 PF14017.1 gi|529078459|ref|YP_008377462.1| - 0.11 12.4 4.1 0.16 11.8 2.8 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF4233) DUF3487 PF11990.3 gi|529078459|ref|YP_008377462.1| - 0.17 11.2 0.9 0.19 11.1 0.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3487) MS_channel PF00924.13 gi|529078461|ref|YP_008377464.1| - 8.3e-15 54.6 2.8 1.3e-14 53.9 1.9 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel TM_helix PF05552.7 gi|529078461|ref|YP_008377464.1| - 2.9e-05 23.6 0.5 2.9e-05 23.6 0.4 2.8 2 1 1 3 3 3 1 Conserved TM helix GTP_EFTU PF00009.22 gi|529078462|ref|YP_008377465.1| - 2.7e-42 144.3 0.3 4.1e-42 143.7 0.2 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|529078462|ref|YP_008377465.1| - 2.7e-27 94.6 0.0 5.3e-27 93.7 0.0 1.5 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.20 gi|529078462|ref|YP_008377465.1| - 2.9e-05 24.0 0.6 9e-05 22.5 0.4 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|529078462|ref|YP_008377465.1| - 0.0018 18.2 0.0 0.0034 17.3 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|529078462|ref|YP_008377465.1| - 0.0059 17.0 0.0 0.017 15.6 0.0 1.8 1 1 0 1 1 1 1 Miro-like protein PduV-EutP PF10662.4 gi|529078462|ref|YP_008377465.1| - 0.014 14.8 0.8 0.46 9.9 0.0 2.2 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation SRPRB PF09439.5 gi|529078462|ref|YP_008377465.1| - 0.015 14.5 0.1 0.43 9.7 0.1 2.2 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit FeoB_N PF02421.13 gi|529078462|ref|YP_008377465.1| - 0.016 14.4 0.6 5.2 6.3 0.3 2.4 2 1 0 2 2 2 0 Ferrous iron transport protein B Dynamin_N PF00350.18 gi|529078462|ref|YP_008377465.1| - 0.028 14.2 0.1 0.12 12.1 0.0 2.1 2 1 0 2 2 2 0 Dynamin family PIN_4 PF13638.1 gi|529078463|ref|YP_008377466.1| - 3e-06 27.3 0.1 1.6e-05 25.0 0.1 1.8 1 1 1 2 2 2 1 PIN domain Fcf1 PF04900.7 gi|529078463|ref|YP_008377466.1| - 5.2e-05 23.2 0.0 6.7e-05 22.9 0.0 1.1 1 0 0 1 1 1 1 Fcf1 DUF188 PF02639.9 gi|529078463|ref|YP_008377466.1| - 0.016 14.6 0.1 0.024 14.0 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized BCR, YaiI/YqxD family COG1671 S1 PF00575.18 gi|529078464|ref|YP_008377467.1| - 2.2e-15 56.4 0.2 2.2e-15 56.4 0.2 1.7 2 0 0 2 2 2 1 S1 RNA binding domain SHS2_Rpb7-N PF03876.12 gi|529078464|ref|YP_008377467.1| - 3e-14 52.9 0.1 4.7e-14 52.2 0.1 1.3 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 Spt4 PF06093.8 gi|529078465|ref|YP_008377468.1| - 4.4e-14 52.1 0.2 5.1e-14 51.9 0.1 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger DZR PF12773.2 gi|529078465|ref|YP_008377468.1| - 0.0044 16.8 0.8 0.006 16.3 0.6 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|529078465|ref|YP_008377468.1| - 0.013 14.7 1.1 0.018 14.2 0.7 1.3 1 0 0 1 1 1 0 zinc-ribbon domain NOB1_Zn_bind PF08772.6 gi|529078465|ref|YP_008377468.1| - 0.029 14.1 0.4 0.03 14.1 0.3 1.2 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like stn_TNFRSF12A PF12191.3 gi|529078465|ref|YP_008377468.1| - 0.075 13.0 0.2 0.075 13.0 0.1 1.2 1 0 0 1 1 1 0 Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain HypA PF01155.14 gi|529078465|ref|YP_008377468.1| - 0.11 12.2 0.4 0.12 12.0 0.3 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family TF_Zn_Ribbon PF08271.7 gi|529078465|ref|YP_008377468.1| - 0.15 11.4 2.3 0.36 10.1 1.6 1.7 1 1 0 1 1 1 0 TFIIB zinc-binding Nudix_N_2 PF14803.1 gi|529078465|ref|YP_008377468.1| - 0.15 11.7 8.3 1.7 8.4 1.8 2.2 1 1 1 2 2 2 0 Nudix N-terminal DNA_RNApol_7kD PF03604.8 gi|529078465|ref|YP_008377468.1| - 0.15 11.5 2.0 0.3 10.5 1.4 1.5 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit A2L_zn_ribbon PF08792.5 gi|529078465|ref|YP_008377468.1| - 0.16 11.4 1.8 13 5.4 0.1 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain RRN7 PF11781.3 gi|529078465|ref|YP_008377468.1| - 0.48 9.9 4.5 1.3 8.6 1.0 2.2 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 Zn-ribbon_8 PF09723.5 gi|529078465|ref|YP_008377468.1| - 1.2 9.1 5.4 5.8 6.9 3.7 1.9 1 1 0 1 1 1 0 Zinc ribbon domain ADK_lid PF05191.9 gi|529078465|ref|YP_008377468.1| - 1.9 8.2 5.2 25 4.6 3.6 2.1 1 1 0 1 1 1 0 Adenylate kinase, active site lid DUF359 PF04019.7 gi|529078466|ref|YP_008377469.1| - 5.4e-33 112.9 0.0 7.7e-33 112.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF359) HATPase_c PF02518.21 gi|529078467|ref|YP_008377470.1| - 3e-14 52.6 0.2 2.2e-13 49.8 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|529078467|ref|YP_008377470.1| - 6.9e-12 45.3 0.3 4.9e-11 42.6 0.0 2.6 3 1 0 3 3 3 1 PAS fold HisKA PF00512.20 gi|529078467|ref|YP_008377470.1| - 1.5e-08 34.5 0.3 4e-08 33.1 0.2 1.8 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.1 gi|529078467|ref|YP_008377470.1| - 1.8e-06 27.7 0.1 3.8e-06 26.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_9 PF13426.1 gi|529078467|ref|YP_008377470.1| - 0.11 12.8 0.0 0.45 10.8 0.0 2.0 2 0 0 2 2 2 0 PAS domain HATPase_c_3 PF13589.1 gi|529078467|ref|YP_008377470.1| - 0.14 11.8 0.0 1.4 8.5 0.0 2.2 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ETF PF01012.16 gi|529078468|ref|YP_008377471.1| - 1.8e-35 122.1 2.5 2.6e-35 121.5 1.8 1.3 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF PF01012.16 gi|529078469|ref|YP_008377472.1| - 4.2e-40 137.1 0.1 9.4e-40 136.0 0.0 1.6 2 0 0 2 2 2 1 Electron transfer flavoprotein domain ETF_alpha PF00766.14 gi|529078469|ref|YP_008377472.1| - 1.6e-32 110.9 0.1 2.9e-32 110.1 0.1 1.4 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain Spore_YhcN_YlaJ PF09580.5 gi|529078469|ref|YP_008377472.1| - 0.27 11.3 2.6 1.2 9.1 0.9 2.2 2 1 0 2 2 2 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) DAO PF01266.19 gi|529078470|ref|YP_008377473.1| - 1.6e-17 63.4 6.9 2.9e-10 39.5 0.7 2.4 1 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|529078470|ref|YP_008377473.1| - 6.2e-14 51.6 1.7 6.4e-09 35.1 0.0 2.9 3 0 0 3 3 3 2 FAD binding domain FAD_oxidored PF12831.2 gi|529078470|ref|YP_008377473.1| - 1.6e-09 37.3 0.2 2.3e-09 36.8 0.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|529078470|ref|YP_008377473.1| - 9.3e-09 34.7 0.0 1.7e-06 27.3 0.0 2.3 2 0 0 2 2 2 1 Thi4 family Pyr_redox_2 PF07992.9 gi|529078470|ref|YP_008377473.1| - 1.8e-08 34.4 0.0 2.8e-08 33.8 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|529078470|ref|YP_008377473.1| - 7.3e-08 31.2 2.1 1.3e-06 27.2 1.5 2.1 1 1 0 1 1 1 1 HI0933-like protein GIDA PF01134.17 gi|529078470|ref|YP_008377473.1| - 2.4e-07 29.9 0.4 6.9e-07 28.4 0.3 1.7 1 1 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|529078470|ref|YP_008377473.1| - 1.1e-06 28.4 0.0 6.4e-06 26.1 0.0 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|529078470|ref|YP_008377473.1| - 2.9e-06 26.5 10.1 3.9e-05 22.8 7.0 2.3 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|529078470|ref|YP_008377473.1| - 3.4e-06 27.2 0.2 1.1e-05 25.5 0.1 1.8 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|529078470|ref|YP_008377473.1| - 0.0012 19.2 0.9 0.16 12.4 0.5 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|529078470|ref|YP_008377473.1| - 0.0031 16.4 0.1 0.014 14.3 0.0 1.8 2 0 0 2 2 2 1 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|529078470|ref|YP_008377473.1| - 0.0066 15.1 1.0 1.7 7.1 0.3 2.2 1 1 1 2 2 2 2 Tryptophan halogenase GMC_oxred_N PF00732.14 gi|529078470|ref|YP_008377473.1| - 0.015 14.4 0.0 2.3 7.2 0.0 2.2 2 0 0 2 2 2 0 GMC oxidoreductase 3HCDH_N PF02737.13 gi|529078470|ref|YP_008377473.1| - 0.075 12.6 0.5 0.15 11.7 0.3 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Fer4_9 PF13187.1 gi|529078471|ref|YP_008377474.1| - 1.1e-05 25.5 9.6 4e-05 23.7 6.8 1.7 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|529078471|ref|YP_008377474.1| - 1.9e-05 24.4 3.2 2.3e-05 24.1 2.2 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|529078471|ref|YP_008377474.1| - 0.00011 21.6 16.4 0.00021 20.7 1.6 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|529078471|ref|YP_008377474.1| - 0.00018 21.5 12.7 0.00019 21.4 0.9 2.6 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_7 PF12838.2 gi|529078471|ref|YP_008377474.1| - 0.00025 21.3 11.2 0.0012 19.1 8.0 2.0 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|529078471|ref|YP_008377474.1| - 0.00026 20.7 12.8 0.00069 19.3 8.9 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|529078471|ref|YP_008377474.1| - 0.0004 20.1 13.5 0.0015 18.3 1.0 2.8 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_2 PF12797.2 gi|529078471|ref|YP_008377474.1| - 0.00046 19.9 2.3 0.00046 19.9 1.6 2.5 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.1 gi|529078471|ref|YP_008377474.1| - 0.0008 19.2 6.2 0.026 14.3 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|529078471|ref|YP_008377474.1| - 0.0099 16.3 17.2 0.037 14.6 3.2 2.7 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_13 PF13370.1 gi|529078471|ref|YP_008377474.1| - 0.012 15.9 0.4 0.012 15.9 0.3 2.3 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|529078471|ref|YP_008377474.1| - 0.014 15.4 12.8 0.022 14.7 1.9 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|529078471|ref|YP_008377474.1| - 0.034 14.4 12.9 4.3 7.7 9.0 2.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|529078471|ref|YP_008377474.1| - 0.17 11.5 4.4 3.4 7.3 0.3 2.1 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_16 PF13484.1 gi|529078471|ref|YP_008377474.1| - 0.25 12.0 11.6 0.99 10.2 1.4 2.7 1 1 1 3 3 3 0 4Fe-4S double cluster binding domain Fer4_5 PF12801.2 gi|529078471|ref|YP_008377474.1| - 0.94 9.3 3.8 1.6 8.5 0.6 2.1 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|529078471|ref|YP_008377474.1| - 0.97 9.9 12.0 0.67 10.4 1.3 2.3 2 1 0 2 2 2 0 4Fe-4S dicluster domain TIL PF01826.12 gi|529078471|ref|YP_008377474.1| - 6.8 6.8 11.1 0.75 9.9 2.7 2.1 1 1 1 2 2 2 0 Trypsin Inhibitor like cysteine rich domain TAT_signal PF10518.4 gi|529078472|ref|YP_008377475.1| - 0.17 11.9 3.1 0.28 11.2 2.1 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Zip PF02535.17 gi|529078473|ref|YP_008377476.1| - 1.9e-18 66.5 13.1 1.3e-15 57.2 4.2 2.2 1 1 0 2 2 2 2 ZIP Zinc transporter ADH_zinc_N PF00107.21 gi|529078474|ref|YP_008377477.1| - 1.1e-25 89.6 0.1 2e-25 88.8 0.1 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|529078474|ref|YP_008377477.1| - 3.8e-16 58.8 0.1 6.1e-16 58.1 0.1 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.1 gi|529078474|ref|YP_008377477.1| - 3.3e-10 40.9 0.1 1.3e-09 38.9 0.0 2.0 1 1 2 3 3 3 1 Zinc-binding dehydrogenase Lactamase_B_2 PF12706.2 gi|529078476|ref|YP_008377479.1| - 7.5e-31 107.1 0.1 1.1e-30 106.6 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|529078476|ref|YP_008377479.1| - 1e-14 54.6 1.1 1.6e-12 47.4 0.2 2.3 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.1 gi|529078476|ref|YP_008377479.1| - 0.0038 16.6 0.0 0.0073 15.7 0.0 1.4 1 0 0 1 1 1 1 tRNase Z endonuclease HATPase_c PF02518.21 gi|529078477|ref|YP_008377480.1| - 1.1e-21 76.5 0.0 2e-21 75.7 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|529078477|ref|YP_008377480.1| - 1.7e-11 43.9 0.0 3.2e-11 43.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|529078477|ref|YP_008377480.1| - 4.9e-06 26.1 0.0 8.2e-06 25.4 0.0 1.3 1 0 0 1 1 1 1 GHKL domain HisKA PF00512.20 gi|529078477|ref|YP_008377480.1| - 0.0022 17.9 0.2 0.0049 16.8 0.1 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain SPOB_a PF14689.1 gi|529078477|ref|YP_008377480.1| - 0.0036 16.8 0.1 0.0061 16.1 0.1 1.4 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain DUF1049 PF06305.6 gi|529078477|ref|YP_008377480.1| - 0.0043 16.5 0.8 0.019 14.4 0.0 2.5 1 1 1 2 2 2 1 Protein of unknown function (DUF1049) HATPase_c_3 PF13589.1 gi|529078477|ref|YP_008377480.1| - 0.016 14.8 0.0 0.031 13.9 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Glyoxalase PF00903.20 gi|529078478|ref|YP_008377481.1| - 1e-17 64.3 0.2 1.2e-17 64.1 0.2 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|529078478|ref|YP_008377481.1| - 1.3e-16 61.1 1.0 1.5e-16 60.9 0.7 1.0 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_4 PF13669.1 gi|529078478|ref|YP_008377481.1| - 4.3e-11 42.8 0.9 1.5e-10 41.0 0.5 1.7 1 1 1 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily adh_short PF00106.20 gi|529078478|ref|YP_008377481.1| - 0.06 13.2 0.3 0.074 12.9 0.2 1.2 1 0 0 1 1 1 0 short chain dehydrogenase Polysacc_deac_1 PF01522.16 gi|529078479|ref|YP_008377482.1| - 6e-14 51.7 0.0 1.7e-11 43.8 0.0 2.4 2 0 0 2 2 2 2 Polysaccharide deacetylase DUF2334 PF10096.4 gi|529078479|ref|YP_008377482.1| - 0.027 13.9 0.0 0.11 11.9 0.0 2.0 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2334) DUF3072 PF11272.3 gi|529078479|ref|YP_008377482.1| - 0.042 13.4 0.5 2.9 7.6 0.0 3.6 4 0 0 4 4 4 0 Protein of unknown function (DUF3072) DUF460 PF04312.8 gi|529078480|ref|YP_008377483.1| - 8.1e-50 167.9 0.9 2.1e-49 166.6 0.2 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF460) Exonuc_VII_L PF02601.10 gi|529078480|ref|YP_008377483.1| - 0.00091 18.5 1.5 0.0017 17.5 1.1 1.4 1 0 0 1 1 1 1 Exonuclease VII, large subunit BLOC1_2 PF10046.4 gi|529078480|ref|YP_008377483.1| - 0.0011 19.0 6.8 0.023 14.8 1.4 2.7 2 0 0 2 2 2 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Reo_sigmaC PF04582.7 gi|529078480|ref|YP_008377483.1| - 0.0021 17.2 0.3 0.0066 15.6 0.1 1.7 1 1 1 2 2 2 1 Reovirus sigma C capsid protein AAA_13 PF13166.1 gi|529078480|ref|YP_008377483.1| - 0.0028 16.1 6.1 0.0044 15.5 4.2 1.2 1 0 0 1 1 1 1 AAA domain DUF812 PF05667.6 gi|529078480|ref|YP_008377483.1| - 0.0058 15.2 11.4 0.011 14.2 7.9 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF812) DUF1664 PF07889.7 gi|529078480|ref|YP_008377483.1| - 0.01 15.6 6.2 0.063 13.0 4.1 2.5 2 1 0 2 2 1 0 Protein of unknown function (DUF1664) NPV_P10 PF05531.7 gi|529078480|ref|YP_008377483.1| - 0.026 14.7 1.6 0.32 11.2 0.4 2.9 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF342 PF03961.8 gi|529078480|ref|YP_008377483.1| - 0.033 12.6 6.5 0.062 11.7 4.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Laminin_I PF06008.9 gi|529078480|ref|YP_008377483.1| - 0.061 12.6 16.4 0.014 14.7 9.0 1.5 2 0 0 2 2 1 0 Laminin Domain I Spc7 PF08317.6 gi|529078480|ref|YP_008377483.1| - 0.081 11.5 12.4 0.12 11.0 8.0 1.6 1 1 0 1 1 1 0 Spc7 kinetochore protein IncA PF04156.9 gi|529078480|ref|YP_008377483.1| - 0.084 12.4 27.1 0.04 13.4 13.7 3.1 2 1 1 3 3 3 0 IncA protein LMBR1 PF04791.11 gi|529078480|ref|YP_008377483.1| - 0.14 10.7 2.1 0.19 10.2 1.5 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein TBPIP PF07106.8 gi|529078480|ref|YP_008377483.1| - 0.15 11.6 15.0 0.65 9.5 5.0 2.5 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) COG2 PF06148.6 gi|529078480|ref|YP_008377483.1| - 0.15 11.9 14.4 3 7.7 4.0 3.6 2 1 1 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 SlyX PF04102.7 gi|529078480|ref|YP_008377483.1| - 0.17 12.2 10.3 0.69 10.3 2.7 3.1 1 1 1 2 2 2 0 SlyX Ferritin PF00210.19 gi|529078480|ref|YP_008377483.1| - 0.18 11.5 0.1 0.18 11.5 0.1 3.5 2 1 0 3 3 2 0 Ferritin-like domain Spectrin PF00435.16 gi|529078480|ref|YP_008377483.1| - 0.2 11.9 16.0 21 5.4 5.6 4.0 3 1 1 4 4 3 0 Spectrin repeat V_ATPase_I PF01496.14 gi|529078480|ref|YP_008377483.1| - 0.22 9.3 6.9 0.38 8.5 4.8 1.4 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF3573 PF12097.3 gi|529078480|ref|YP_008377483.1| - 0.27 9.7 0.3 0.44 9.0 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3573) TMF_DNA_bd PF12329.3 gi|529078480|ref|YP_008377483.1| - 0.29 10.9 26.3 0.12 12.1 11.0 3.1 2 1 1 3 3 2 0 TATA element modulatory factor 1 DNA binding TMCO5 PF14992.1 gi|529078480|ref|YP_008377483.1| - 0.32 10.1 15.7 0.6 9.1 10.9 1.4 1 0 0 1 1 1 0 TMCO5 family Prefoldin PF02996.12 gi|529078480|ref|YP_008377483.1| - 1.1 8.9 11.8 0.54 9.9 2.5 2.9 3 0 0 3 3 2 0 Prefoldin subunit DUF4407 PF14362.1 gi|529078480|ref|YP_008377483.1| - 1.2 8.0 16.8 0.053 12.4 7.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) Cep57_CLD PF14073.1 gi|529078480|ref|YP_008377483.1| - 1.3 8.7 18.8 2.9 7.6 6.7 2.4 1 1 1 2 2 2 0 Centrosome localisation domain of Cep57 APG6 PF04111.7 gi|529078480|ref|YP_008377483.1| - 1.5 7.8 20.5 0.023 13.7 9.0 1.8 2 0 0 2 2 1 0 Autophagy protein Apg6 DUF641 PF04859.7 gi|529078480|ref|YP_008377483.1| - 1.6 8.5 17.3 0.025 14.3 3.3 3.0 2 1 1 3 3 2 0 Plant protein of unknown function (DUF641) Fib_alpha PF08702.5 gi|529078480|ref|YP_008377483.1| - 1.6 8.8 7.9 6.1 6.9 5.5 1.9 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family COG5 PF10392.4 gi|529078480|ref|YP_008377483.1| - 1.7 8.6 7.1 7.8 6.4 1.1 2.0 1 1 1 2 2 2 0 Golgi transport complex subunit 5 DUF3450 PF11932.3 gi|529078480|ref|YP_008377483.1| - 2.3 7.4 11.1 12 5.0 2.9 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) ADIP PF11559.3 gi|529078480|ref|YP_008377483.1| - 2.4 8.0 17.8 9.2 6.1 7.2 2.5 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding Atg14 PF10186.4 gi|529078480|ref|YP_008377483.1| - 2.4 7.0 16.8 14 4.5 11.3 1.7 1 1 1 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 ATG16 PF08614.6 gi|529078480|ref|YP_008377483.1| - 2.7 7.7 20.1 1.1 9.0 2.8 2.1 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) Tho2 PF11262.3 gi|529078480|ref|YP_008377483.1| - 4 6.4 10.4 1.5 7.7 4.4 1.9 1 1 1 2 2 2 0 Transcription factor/nuclear export subunit protein 2 Occludin_ELL PF07303.8 gi|529078480|ref|YP_008377483.1| - 4.5 8.0 15.4 2.9 8.6 6.5 3.1 3 1 0 3 3 1 0 Occludin homology domain DivIVA PF05103.8 gi|529078480|ref|YP_008377483.1| - 7.8 6.5 17.5 0.57 10.2 8.2 2.1 2 0 0 2 2 1 0 DivIVA protein CENP-F_leu_zip PF10473.4 gi|529078480|ref|YP_008377483.1| - 8.8 6.1 33.1 0.025 14.4 14.6 2.7 3 0 0 3 3 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Prefoldin_2 PF01920.15 gi|529078480|ref|YP_008377483.1| - 8.8 6.1 20.6 6.3 6.6 0.0 4.0 2 1 2 4 4 3 0 Prefoldin subunit FlaC_arch PF05377.6 gi|529078480|ref|YP_008377483.1| - 9.9 6.1 8.1 18 5.3 1.1 2.7 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) TGT PF01702.13 gi|529078483|ref|YP_008377486.1| - 1.5e-50 171.7 0.0 2e-50 171.3 0.0 1.2 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase TGT_C1 PF14809.1 gi|529078483|ref|YP_008377486.1| - 0.036 13.8 0.0 1.5 8.6 0.0 2.4 2 0 0 2 2 2 0 C1 domain of tRNA-guanine transglycosylase dimerisation TGT_C2 PF14810.1 gi|529078484|ref|YP_008377487.1| - 1.9e-21 75.6 0.0 4.7e-21 74.4 0.0 1.7 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase TGT PF01702.13 gi|529078484|ref|YP_008377487.1| - 5.2e-19 68.4 0.0 9e-19 67.6 0.0 1.3 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase PUA PF01472.15 gi|529078484|ref|YP_008377487.1| - 1.3e-11 44.0 0.1 3.8e-11 42.5 0.1 1.8 1 0 0 1 1 1 1 PUA domain VanZ PF04892.7 gi|529078485|ref|YP_008377488.1| - 1.1e-08 35.0 2.5 1.5e-08 34.6 1.7 1.2 1 0 0 1 1 1 1 VanZ like family Radical_SAM PF04055.16 gi|529078488|ref|YP_008377491.1| - 6.7e-05 23.1 0.1 0.00014 22.0 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily COPI_assoc PF08507.5 gi|529078489|ref|YP_008377492.1| - 0.018 14.7 0.3 0.021 14.5 0.2 1.1 1 0 0 1 1 1 0 COPI associated protein DUF2910 PF11139.3 gi|529078489|ref|YP_008377492.1| - 0.019 14.0 4.5 0.022 13.9 3.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2910) Glt_symporter PF03616.9 gi|529078489|ref|YP_008377492.1| - 0.031 12.7 0.9 0.036 12.5 0.6 1.1 1 0 0 1 1 1 0 Sodium/glutamate symporter Iron_permease PF04120.7 gi|529078489|ref|YP_008377492.1| - 0.046 13.3 0.2 0.049 13.2 0.2 1.1 1 0 0 1 1 1 0 Low affinity iron permease DUF4149 PF13664.1 gi|529078489|ref|YP_008377492.1| - 0.11 12.5 1.8 0.17 11.9 1.3 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4149) DUF308 PF03729.8 gi|529078489|ref|YP_008377492.1| - 1.1 9.2 6.0 2.2 8.3 4.3 1.3 1 1 0 1 1 1 0 Short repeat of unknown function (DUF308) DUF4345 PF14248.1 gi|529078490|ref|YP_008377493.1| - 0.0074 15.7 1.1 0.0091 15.4 0.8 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4345) PSI_PSAK PF01241.13 gi|529078490|ref|YP_008377493.1| - 0.09 12.7 0.2 0.15 12.0 0.1 1.4 1 0 0 1 1 1 0 Photosystem I psaG / psaK HIT PF01230.18 gi|529078492|ref|YP_008377495.1| - 2.3e-22 79.3 0.2 3.2e-22 78.8 0.2 1.2 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|529078492|ref|YP_008377495.1| - 1e-10 41.8 0.0 1.3e-10 41.5 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|529078492|ref|YP_008377495.1| - 0.046 13.3 0.1 0.1 12.2 0.1 1.6 1 1 0 1 1 1 0 Protein similar to CwfJ C-terminus 1 TFIIB PF00382.14 gi|529078493|ref|YP_008377496.1| - 2.8e-32 110.3 0.7 6.4e-16 57.9 0.0 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|529078493|ref|YP_008377496.1| - 3.7e-08 32.5 0.1 6.8e-08 31.7 0.1 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_C PF02984.14 gi|529078493|ref|YP_008377496.1| - 0.0042 17.0 0.1 2.7 7.9 0.0 2.3 2 0 0 2 2 2 2 Cyclin, C-terminal domain TetR_N PF00440.18 gi|529078493|ref|YP_008377496.1| - 0.046 13.3 2.2 0.24 11.0 0.1 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family RB_B PF01857.15 gi|529078493|ref|YP_008377496.1| - 0.065 12.7 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 Retinoblastoma-associated protein B domain HTH_3 PF01381.17 gi|529078493|ref|YP_008377496.1| - 0.075 12.8 0.0 0.21 11.4 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix MCM PF00493.18 gi|529078494|ref|YP_008377497.1| - 4.4e-109 364.2 0.5 6.8e-59 199.3 0.0 4.2 4 0 0 4 4 4 4 MCM2/3/5 family Intein_splicing PF14890.1 gi|529078494|ref|YP_008377497.1| - 2.1e-40 138.5 0.0 8.3e-16 57.7 0.0 5.6 4 2 0 4 4 4 3 Intein splicing domain LAGLIDADG_3 PF14528.1 gi|529078494|ref|YP_008377497.1| - 6.8e-32 109.5 0.1 2.1e-15 56.7 0.0 4.8 4 0 0 4 4 4 3 LAGLIDADG-like domain HTH_3 PF01381.17 gi|529078494|ref|YP_008377497.1| - 4.4e-18 64.8 0.3 1.5e-07 31.1 0.0 4.4 4 0 0 4 4 4 2 Helix-turn-helix MCM_N PF14551.1 gi|529078494|ref|YP_008377497.1| - 1.4e-17 64.2 1.2 7e-17 62.0 0.2 2.6 3 0 0 3 3 2 1 MCM N-terminal domain HTH_19 PF12844.2 gi|529078494|ref|YP_008377497.1| - 1.2e-10 41.3 0.0 7.5e-06 25.9 0.0 4.1 4 0 0 4 4 4 2 Helix-turn-helix domain Hint PF01079.15 gi|529078494|ref|YP_008377497.1| - 2.1e-06 27.0 0.0 0.0078 15.4 0.0 3.3 3 0 0 3 3 3 2 Hint module HTH_31 PF13560.1 gi|529078494|ref|YP_008377497.1| - 1.2e-05 25.3 1.1 1.2e-05 25.3 0.8 6.6 7 0 0 7 7 6 2 Helix-turn-helix domain LAGLIDADG_WhiA PF14527.1 gi|529078494|ref|YP_008377497.1| - 0.00014 21.6 0.0 0.02 14.7 0.0 3.5 3 0 0 3 3 3 1 WhiA LAGLIDADG-like domain Hom_end PF05204.9 gi|529078494|ref|YP_008377497.1| - 0.0012 18.7 0.3 0.018 14.9 0.0 2.8 3 0 0 3 3 3 1 Homing endonuclease Mg_chelatase PF01078.16 gi|529078494|ref|YP_008377497.1| - 0.077 12.1 0.0 13 4.9 0.0 2.9 3 0 0 3 3 3 0 Magnesium chelatase, subunit ChlI AXH PF08517.7 gi|529078494|ref|YP_008377497.1| - 0.16 12.1 0.3 8.4 6.6 0.0 3.3 3 0 0 3 3 3 0 Ataxin-1 and HBP1 module (AXH) Zn-ribbon_8 PF09723.5 gi|529078494|ref|YP_008377497.1| - 0.49 10.4 2.7 1.1 9.2 1.9 1.6 1 0 0 1 1 1 0 Zinc ribbon domain Abhydrolase_1 PF00561.15 gi|529078495|ref|YP_008377498.1| - 9e-18 64.6 0.0 1.6e-17 63.8 0.0 1.4 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.2 gi|529078495|ref|YP_008377498.1| - 1.7e-13 50.9 0.0 5.8e-13 49.2 0.0 1.8 2 1 0 2 2 2 1 Alpha/beta hydrolase family DUF3141 PF11339.3 gi|529078495|ref|YP_008377498.1| - 5.3e-10 38.2 0.0 2.5e-07 29.4 0.1 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF3141) PhaC_N PF07167.8 gi|529078495|ref|YP_008377498.1| - 8.6e-10 38.3 0.0 1.5e-09 37.4 0.0 1.4 1 0 0 1 1 1 1 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus Abhydrolase_5 PF12695.2 gi|529078495|ref|YP_008377498.1| - 8e-09 35.4 0.0 6.6e-08 32.4 0.0 2.1 1 1 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|529078495|ref|YP_008377498.1| - 4.7e-08 32.5 0.1 0.00018 20.8 0.0 3.1 3 1 0 3 3 3 2 Dienelactone hydrolase family HHH_5 PF14520.1 gi|529078495|ref|YP_008377498.1| - 4.9e-07 29.8 0.1 1.1e-06 28.6 0.1 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix domain DUF4332 PF14229.1 gi|529078495|ref|YP_008377498.1| - 0.00021 21.2 0.0 0.0004 20.3 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) PHB_depo_C PF06850.6 gi|529078495|ref|YP_008377498.1| - 0.00022 20.5 0.0 0.00038 19.7 0.0 1.4 1 0 0 1 1 1 1 PHB de-polymerase C-terminus DNA_pol_lambd_f PF10391.4 gi|529078495|ref|YP_008377498.1| - 0.0003 20.2 0.0 0.00079 18.9 0.0 1.7 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda Cdd1 PF11731.3 gi|529078495|ref|YP_008377498.1| - 0.0012 18.6 0.0 0.0065 16.3 0.0 2.1 2 0 0 2 2 2 1 Pathogenicity locus FSH1 PF03959.8 gi|529078495|ref|YP_008377498.1| - 0.0062 16.0 0.0 0.029 13.7 0.0 1.9 2 0 0 2 2 2 1 Serine hydrolase (FSH1) DUF2048 PF09752.4 gi|529078495|ref|YP_008377498.1| - 0.085 11.7 1.0 0.23 10.3 0.2 1.8 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2048) TfoX_C PF04994.8 gi|529078495|ref|YP_008377498.1| - 0.1 12.4 0.0 0.22 11.4 0.0 1.5 1 0 0 1 1 1 0 TfoX C-terminal domain Nitro_FeMo-Co PF02579.12 gi|529078495|ref|YP_008377498.1| - 0.12 12.4 0.0 0.36 10.9 0.0 1.8 1 0 0 1 1 1 0 Dinitrogenase iron-molybdenum cofactor PHA_synth_III_E PF09712.5 gi|529078496|ref|YP_008377499.1| - 2.9e-13 49.8 6.4 3e-13 49.8 0.7 2.0 1 1 1 2 2 2 1 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) Phasin PF05597.6 gi|529078496|ref|YP_008377499.1| - 0.00099 18.8 0.8 0.00099 18.8 0.5 2.3 1 1 1 2 2 2 1 Poly(hydroxyalcanoate) granule associated protein (phasin) BMFP PF04380.8 gi|529078496|ref|YP_008377499.1| - 0.0043 17.1 5.9 0.011 15.9 1.5 2.4 2 0 0 2 2 2 1 Membrane fusogenic activity PAS_8 PF13188.1 gi|529078496|ref|YP_008377499.1| - 0.074 12.9 0.5 1.5 8.7 0.3 3.2 1 1 0 1 1 1 0 PAS domain LXG PF04740.7 gi|529078496|ref|YP_008377499.1| - 0.12 12.2 5.0 0.16 11.7 1.8 1.9 1 1 1 2 2 2 0 LXG domain of WXG superfamily DUF769 PF05590.6 gi|529078496|ref|YP_008377499.1| - 0.3 10.2 1.6 0.61 9.2 1.1 1.6 1 1 0 1 1 1 0 Xylella fastidiosa protein of unknown function (DUF769) FlxA PF14282.1 gi|529078497|ref|YP_008377500.1| - 0.00033 20.5 3.1 0.00033 20.5 2.1 2.1 2 0 0 2 2 2 1 FlxA-like protein Reo_sigmaC PF04582.7 gi|529078497|ref|YP_008377500.1| - 0.00037 19.7 3.2 0.0005 19.3 2.2 1.2 1 0 0 1 1 1 1 Reovirus sigma C capsid protein NPV_P10 PF05531.7 gi|529078497|ref|YP_008377500.1| - 0.0016 18.6 11.7 0.033 14.4 2.5 3.8 1 1 3 4 4 4 1 Nucleopolyhedrovirus P10 protein Baculo_PEP_C PF04513.7 gi|529078497|ref|YP_008377500.1| - 0.005 16.6 5.8 0.8 9.5 0.0 2.8 1 1 2 3 3 3 3 Baculovirus polyhedron envelope protein, PEP, C terminus Apolipoprotein PF01442.13 gi|529078497|ref|YP_008377500.1| - 0.0061 16.0 16.2 0.11 12.0 11.2 2.3 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain Transposase_22 PF02994.9 gi|529078497|ref|YP_008377500.1| - 0.0072 14.8 3.2 0.1 11.0 0.5 2.1 1 1 1 2 2 2 1 L1 transposable element Filament PF00038.16 gi|529078497|ref|YP_008377500.1| - 0.014 14.8 13.7 0.018 14.5 9.5 1.0 1 0 0 1 1 1 0 Intermediate filament protein PilJ PF13675.1 gi|529078497|ref|YP_008377500.1| - 0.018 15.3 9.9 0.085 13.1 2.2 2.5 1 1 2 3 3 3 0 Type IV pili methyl-accepting chemotaxis transducer N-term SF-assemblin PF06705.6 gi|529078497|ref|YP_008377500.1| - 0.021 13.9 7.0 0.71 8.9 0.8 2.5 1 1 1 2 2 2 0 SF-assemblin/beta giardin FlaC_arch PF05377.6 gi|529078497|ref|YP_008377500.1| - 0.025 14.4 10.5 0.4 10.6 1.3 3.7 3 1 1 4 4 4 0 Flagella accessory protein C (FlaC) ALMT PF11744.3 gi|529078497|ref|YP_008377500.1| - 0.032 12.8 1.3 0.041 12.5 0.8 1.3 1 1 0 1 1 1 0 Aluminium activated malate transporter AAA_13 PF13166.1 gi|529078497|ref|YP_008377500.1| - 0.032 12.6 4.5 0.041 12.3 3.2 1.0 1 0 0 1 1 1 0 AAA domain COG5 PF10392.4 gi|529078497|ref|YP_008377500.1| - 0.034 14.0 2.9 2.1 8.2 0.5 3.0 1 1 2 3 3 3 0 Golgi transport complex subunit 5 Serine_rich PF08824.5 gi|529078497|ref|YP_008377500.1| - 0.088 12.5 4.3 0.56 9.8 0.6 2.5 1 1 1 2 2 2 0 Serine rich protein interaction domain Prominin PF05478.6 gi|529078497|ref|YP_008377500.1| - 0.13 9.7 3.8 0.18 9.3 2.6 1.3 1 0 0 1 1 1 0 Prominin DUF3584 PF12128.3 gi|529078497|ref|YP_008377500.1| - 0.14 9.4 10.6 0.22 8.8 7.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Phage_GP20 PF06810.6 gi|529078497|ref|YP_008377500.1| - 0.15 11.5 7.3 0.11 11.8 3.4 2.1 1 1 1 2 2 2 0 Phage minor structural protein GP20 YtxH PF12732.2 gi|529078497|ref|YP_008377500.1| - 0.16 12.3 7.7 4.3 7.7 3.0 3.0 2 1 0 2 2 2 0 YtxH-like protein DUF4559 PF15112.1 gi|529078497|ref|YP_008377500.1| - 0.17 10.9 8.1 0.28 10.3 5.6 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4559) Atg14 PF10186.4 gi|529078497|ref|YP_008377500.1| - 0.19 10.6 1.5 0.46 9.3 0.1 1.9 2 0 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 Spc7 PF08317.6 gi|529078497|ref|YP_008377500.1| - 0.24 10.0 7.2 0.13 10.8 3.7 1.7 1 1 0 1 1 1 0 Spc7 kinetochore protein DUF1664 PF07889.7 gi|529078497|ref|YP_008377500.1| - 0.25 11.1 5.2 1.8 8.3 1.3 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) ApoO PF09769.4 gi|529078497|ref|YP_008377500.1| - 0.43 10.2 3.6 7.1 6.3 0.1 2.6 1 1 1 2 2 2 0 Apolipoprotein O COG2 PF06148.6 gi|529078497|ref|YP_008377500.1| - 0.57 10.0 10.7 1.1 9.0 0.6 3.7 1 1 2 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 Phage_GPO PF05929.6 gi|529078497|ref|YP_008377500.1| - 0.58 9.3 13.0 0.078 12.2 4.8 1.9 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase DUF972 PF06156.8 gi|529078497|ref|YP_008377500.1| - 0.75 10.1 7.8 1.8 8.9 0.5 3.3 1 1 2 3 3 3 0 Protein of unknown function (DUF972) DUF948 PF06103.6 gi|529078497|ref|YP_008377500.1| - 0.88 9.4 6.8 0.43 10.4 1.2 2.5 3 0 0 3 3 2 0 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.7 gi|529078497|ref|YP_008377500.1| - 1.1 9.0 6.3 0.84 9.3 1.2 2.5 1 1 2 3 3 3 0 Laminin Domain II MT0933_antitox PF14013.1 gi|529078497|ref|YP_008377500.1| - 1.2 9.3 8.4 3.2 7.9 2.7 3.0 2 1 0 2 2 2 0 MT0933-like antitoxin protein TBPIP PF07106.8 gi|529078497|ref|YP_008377500.1| - 1.2 8.6 6.8 1 8.8 1.7 2.2 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Prefoldin PF02996.12 gi|529078497|ref|YP_008377500.1| - 1.5 8.4 8.3 0.32 10.6 1.1 3.0 2 1 1 3 3 3 0 Prefoldin subunit Syntaxin-6_N PF09177.6 gi|529078497|ref|YP_008377500.1| - 1.8 9.0 8.5 7.4 7.0 2.1 2.7 1 1 1 2 2 2 0 Syntaxin 6, N-terminal Spectrin PF00435.16 gi|529078497|ref|YP_008377500.1| - 2.1 8.6 13.1 0.98 9.7 3.6 2.9 1 1 0 2 2 2 0 Spectrin repeat DUF883 PF05957.8 gi|529078497|ref|YP_008377500.1| - 2.3 8.6 11.9 6.1 7.3 3.6 2.9 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF883) IncA PF04156.9 gi|529078497|ref|YP_008377500.1| - 3.4 7.2 16.5 37 3.8 11.4 2.2 1 1 0 1 1 1 0 IncA protein DUF848 PF05852.6 gi|529078497|ref|YP_008377500.1| - 3.9 7.3 13.1 2.4 8.0 3.0 2.5 1 1 2 3 3 3 0 Gammaherpesvirus protein of unknown function (DUF848) DASH_Dam1 PF08653.5 gi|529078497|ref|YP_008377500.1| - 4.6 7.0 5.3 28 4.5 0.3 3.0 3 1 1 4 4 2 0 DASH complex subunit Dam1 FlgN PF05130.7 gi|529078497|ref|YP_008377500.1| - 4.7 7.4 13.8 2.5 8.3 5.5 2.8 1 1 1 2 2 2 0 FlgN protein DUF4404 PF14357.1 gi|529078497|ref|YP_008377500.1| - 4.9 7.6 12.5 3.9 7.9 4.0 3.2 1 1 3 4 4 4 0 Domain of unknown function (DUF4404) Snapin_Pallidin PF14712.1 gi|529078497|ref|YP_008377500.1| - 5.6 7.3 8.6 6.2 7.2 1.4 3.4 3 1 0 3 3 3 0 Snapin/Pallidin HisKA PF00512.20 gi|529078497|ref|YP_008377500.1| - 6.5 6.8 6.5 4.8 7.2 1.1 2.9 2 1 1 3 3 3 0 His Kinase A (phospho-acceptor) domain AbrB-like PF14250.1 gi|529078498|ref|YP_008377501.1| - 0.039 13.8 0.0 0.051 13.4 0.0 1.3 1 1 0 1 1 1 0 AbrB-like transcriptional regulator PhnI PF05861.7 gi|529078498|ref|YP_008377501.1| - 0.049 12.1 0.1 0.058 11.9 0.1 1.0 1 0 0 1 1 1 0 Bacterial phosphonate metabolism protein (PhnI) MaoC_dehydratas PF01575.14 gi|529078500|ref|YP_008377503.1| - 4.8e-24 84.0 0.0 6e-24 83.7 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|529078500|ref|YP_008377503.1| - 2e-09 37.3 0.1 1e-08 35.0 0.0 2.1 1 1 1 2 2 2 1 N-terminal half of MaoC dehydratase 4HBT PF03061.17 gi|529078500|ref|YP_008377503.1| - 0.00099 19.1 0.1 0.0067 16.5 0.0 2.1 2 1 0 2 2 2 1 Thioesterase superfamily 4HBT_3 PF13622.1 gi|529078500|ref|YP_008377503.1| - 0.025 14.3 0.1 0.032 13.9 0.1 1.1 1 0 0 1 1 1 0 Thioesterase-like superfamily 4HBT_2 PF13279.1 gi|529078500|ref|YP_008377503.1| - 0.07 13.5 0.0 0.081 13.3 0.0 1.2 1 0 0 1 1 1 0 Thioesterase-like superfamily FabA PF07977.8 gi|529078500|ref|YP_008377503.1| - 0.13 11.7 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 FabA-like domain CGI-121 PF08617.5 gi|529078501|ref|YP_008377504.1| - 1.4e-15 57.3 0.0 1.8e-15 56.9 0.0 1.1 1 0 0 1 1 1 1 Kinase binding protein CGI-121 DEAD PF00270.24 gi|529078502|ref|YP_008377505.1| - 4.9e-25 87.9 0.0 9.9e-25 86.9 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|529078502|ref|YP_008377505.1| - 5.3e-07 29.4 0.0 1.5e-06 27.9 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain HHH_5 PF14520.1 gi|529078502|ref|YP_008377505.1| - 1.3e-06 28.4 0.3 1.3e-05 25.2 0.4 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.4 gi|529078502|ref|YP_008377505.1| - 0.00011 21.7 0.0 0.00027 20.3 0.0 1.7 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda ResIII PF04851.10 gi|529078502|ref|YP_008377505.1| - 0.0013 18.6 0.0 0.003 17.3 0.0 1.6 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit HHH PF00633.18 gi|529078502|ref|YP_008377505.1| - 0.058 13.1 0.1 0.31 10.8 0.0 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix motif Fer4_15 PF13459.1 gi|529078503|ref|YP_008377506.1| - 8.3e-17 61.5 2.9 9.8e-17 61.2 2.0 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|529078503|ref|YP_008377506.1| - 7.6e-09 35.8 0.5 1.3e-08 35.0 0.3 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_19 PF06902.6 gi|529078503|ref|YP_008377506.1| - 0.0051 16.6 0.1 0.06 13.1 0.1 2.0 1 1 0 1 1 1 1 Divergent 4Fe-4S mono-cluster Fer4 PF00037.22 gi|529078503|ref|YP_008377506.1| - 0.06 12.9 1.0 2.4 7.9 0.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Takusan PF04822.8 gi|529078504|ref|YP_008377507.1| - 0.054 13.2 0.1 0.066 12.9 0.1 1.2 1 0 0 1 1 1 0 Takusan OHCU_decarbox PF09349.5 gi|529078504|ref|YP_008377507.1| - 0.096 12.9 0.0 0.12 12.6 0.0 1.3 1 1 0 1 1 1 0 OHCU decarboxylase PIN PF01850.16 gi|529078505|ref|YP_008377508.1| - 3.2e-05 24.2 0.5 4e-05 23.9 0.3 1.2 1 0 0 1 1 1 1 PIN domain TPR_14 PF13428.1 gi|529078505|ref|YP_008377508.1| - 0.016 15.7 0.1 7.2 7.5 0.0 2.4 1 1 1 2 2 2 0 Tetratricopeptide repeat TPR_16 PF13432.1 gi|529078505|ref|YP_008377508.1| - 0.046 14.4 0.2 1.6 9.4 0.1 2.2 1 1 0 1 1 1 0 Tetratricopeptide repeat PGI PF00342.14 gi|529078506|ref|YP_008377509.1| - 4.6e-49 167.1 0.0 6.2e-49 166.7 0.0 1.0 1 0 0 1 1 1 1 Phosphoglucose isomerase SBP_bac_8 PF13416.1 gi|529078507|ref|YP_008377510.1| - 6.7e-21 75.2 0.0 8.4e-21 74.9 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|529078507|ref|YP_008377510.1| - 1e-10 41.9 0.0 1.6e-10 41.2 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Acetyltransf_8 PF13523.1 gi|529078507|ref|YP_008377510.1| - 0.11 12.4 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain ACT PF01842.20 gi|529078508|ref|YP_008377511.1| - 0.00039 19.8 0.4 0.00039 19.8 0.3 2.0 2 1 0 2 2 2 1 ACT domain ACT_7 PF13840.1 gi|529078508|ref|YP_008377511.1| - 0.00089 18.7 0.1 0.0027 17.2 0.0 1.8 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.1 gi|529078508|ref|YP_008377511.1| - 0.0011 19.2 0.0 0.0046 17.2 0.0 1.9 2 0 0 2 2 2 1 ACT domain IGPD PF00475.13 gi|529078509|ref|YP_008377512.1| - 5.1e-62 208.0 1.7 5.1e-62 208.0 1.1 1.4 2 0 0 2 2 2 1 Imidazoleglycerol-phosphate dehydratase MFS_1 PF07690.11 gi|529078510|ref|YP_008377513.1| - 3e-25 88.6 67.2 2.4e-23 82.4 26.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily OATP PF03137.15 gi|529078510|ref|YP_008377513.1| - 4.3 5.2 10.2 0.89 7.5 1.0 2.2 2 0 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family His_biosynth PF00977.16 gi|529078511|ref|YP_008377514.1| - 1.7e-73 246.6 4.6 2e-73 246.4 3.2 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.12 gi|529078511|ref|YP_008377514.1| - 7.9e-13 47.9 0.2 6.5e-07 28.4 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) PcrB PF01884.12 gi|529078511|ref|YP_008377514.1| - 2.4e-10 40.0 5.0 8.1e-06 25.2 0.1 2.2 2 0 0 2 2 2 2 PcrB family DHO_dh PF01180.16 gi|529078511|ref|YP_008377514.1| - 3e-10 39.5 1.7 2.2e-06 26.8 0.2 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase Trp_syntA PF00290.15 gi|529078511|ref|YP_008377514.1| - 5.5e-07 28.3 0.7 0.0069 14.9 0.0 2.2 2 0 0 2 2 2 2 Tryptophan synthase alpha chain NMO PF03060.10 gi|529078511|ref|YP_008377514.1| - 5.7e-07 28.9 2.5 5.7e-07 28.9 1.8 2.1 1 1 0 2 2 2 1 Nitronate monooxygenase ThiG PF05690.9 gi|529078511|ref|YP_008377514.1| - 7.5e-07 28.4 4.8 0.00094 18.3 0.1 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG IGPS PF00218.16 gi|529078511|ref|YP_008377514.1| - 1e-06 28.0 0.4 0.0032 16.5 0.0 2.9 2 1 1 3 3 3 2 Indole-3-glycerol phosphate synthase IMPDH PF00478.20 gi|529078511|ref|YP_008377514.1| - 6.7e-06 25.2 2.6 0.034 13.0 0.2 2.1 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain NanE PF04131.9 gi|529078511|ref|YP_008377514.1| - 5.7e-05 22.1 1.4 0.048 12.6 0.2 2.3 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase TMP-TENI PF02581.12 gi|529078511|ref|YP_008377514.1| - 0.00042 19.4 2.7 0.023 13.8 0.3 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase/TENI FMN_dh PF01070.13 gi|529078511|ref|YP_008377514.1| - 0.00052 18.9 10.5 0.047 12.5 1.3 2.1 2 0 0 2 2 2 2 FMN-dependent dehydrogenase Ribul_P_3_epim PF00834.14 gi|529078511|ref|YP_008377514.1| - 0.0016 17.6 2.2 0.28 10.2 0.2 2.3 2 0 0 2 2 2 2 Ribulose-phosphate 3 epimerase family G3P_antiterm PF04309.7 gi|529078511|ref|YP_008377514.1| - 0.0024 16.9 2.3 0.047 12.7 0.2 2.1 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator QRPTase_C PF01729.14 gi|529078511|ref|YP_008377514.1| - 0.065 12.7 0.6 4.4 6.7 0.1 2.2 2 0 0 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain PA PF02225.17 gi|529078511|ref|YP_008377514.1| - 0.17 11.5 1.5 4.4 7.0 0.4 2.5 1 1 1 2 2 2 0 PA domain B12-binding PF02310.14 gi|529078511|ref|YP_008377514.1| - 0.17 11.7 6.3 6.4 6.6 0.5 2.8 2 1 1 3 3 3 0 B12 binding domain GDPD_2 PF13653.1 gi|529078511|ref|YP_008377514.1| - 0.22 11.7 2.0 2 8.7 0.0 2.9 3 1 0 3 3 2 0 Glycerophosphoryl diester phosphodiesterase family Cpn60_TCP1 PF00118.19 gi|529078512|ref|YP_008377515.1| - 3.9e-146 487.4 0.9 4.4e-146 487.3 0.6 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family HTH_IclR PF09339.5 gi|529078514|ref|YP_008377517.1| - 0.00012 21.5 0.6 0.00012 21.5 0.4 1.6 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|529078514|ref|YP_008377517.1| - 0.00031 20.4 0.6 0.00063 19.4 0.4 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|529078514|ref|YP_008377517.1| - 0.00068 19.3 0.0 0.0011 18.6 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|529078514|ref|YP_008377517.1| - 0.0018 18.5 0.3 0.0035 17.6 0.2 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|529078514|ref|YP_008377517.1| - 0.0078 15.5 0.0 0.013 14.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|529078514|ref|YP_008377517.1| - 0.016 14.8 1.5 0.019 14.5 0.5 1.5 2 0 0 2 2 2 0 MarR family Phage_rep_org_N PF09681.5 gi|529078514|ref|YP_008377517.1| - 0.022 14.3 0.0 0.03 13.9 0.0 1.2 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_28 PF13518.1 gi|529078514|ref|YP_008377517.1| - 0.11 12.5 0.0 6.7 6.8 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain Rubrerythrin PF02915.12 gi|529078515|ref|YP_008377518.1| - 1.8e-07 31.5 5.2 7.2e-06 26.3 0.8 2.4 1 1 1 2 2 2 2 Rubrerythrin DUF2383 PF09537.5 gi|529078515|ref|YP_008377518.1| - 0.22 11.7 5.6 0.76 10.0 0.9 3.2 2 1 2 4 4 4 0 Domain of unknown function (DUF2383) Ferritin PF00210.19 gi|529078515|ref|YP_008377518.1| - 0.8 9.4 5.7 0.59 9.8 1.6 2.3 2 2 0 2 2 2 0 Ferritin-like domain DUF3813 PF12758.2 gi|529078515|ref|YP_008377518.1| - 2.2 8.4 6.0 6.8 6.9 0.2 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF3813) KaiC PF06745.8 gi|529078516|ref|YP_008377519.1| - 8.5e-11 41.3 0.1 5.8e-05 22.3 0.1 2.1 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.1 gi|529078516|ref|YP_008377519.1| - 2.9e-06 26.8 0.8 3e-05 23.5 0.5 2.2 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|529078517|ref|YP_008377520.1| - 0.0001 20.9 3.5 0.00013 20.6 2.5 1.1 1 0 0 1 1 1 1 AAA domain DUF294_C PF10335.4 gi|529078517|ref|YP_008377520.1| - 0.0011 18.6 0.7 0.067 12.8 0.1 2.6 2 0 0 2 2 2 1 Putative nucleotidyltransferase substrate binding domain Baculo_PEP_C PF04513.7 gi|529078517|ref|YP_008377520.1| - 0.0015 18.3 4.4 0.057 13.2 1.3 2.4 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus Seryl_tRNA_N PF02403.17 gi|529078517|ref|YP_008377520.1| - 0.0044 17.0 1.8 0.014 15.3 0.5 2.2 1 1 1 2 2 2 1 Seryl-tRNA synthetase N-terminal domain DUF4631 PF15450.1 gi|529078517|ref|YP_008377520.1| - 0.005 15.1 2.0 0.005 15.1 1.4 2.0 1 1 1 2 2 2 1 Domain of unknown function (DUF4631) Fmp27_WPPW PF10359.4 gi|529078517|ref|YP_008377520.1| - 0.0077 14.7 0.6 0.0077 14.7 0.4 1.6 1 1 0 1 1 1 1 RNA pol II promoter Fmp27 protein domain Spc7 PF08317.6 gi|529078517|ref|YP_008377520.1| - 0.025 13.2 5.0 0.18 10.4 0.3 2.1 1 1 1 2 2 2 0 Spc7 kinetochore protein MtrG PF04210.8 gi|529078517|ref|YP_008377520.1| - 0.025 14.2 5.3 4.8 6.9 0.1 3.3 3 0 0 3 3 3 0 Tetrahydromethanopterin S-methyltransferase, subunit G Nup54 PF13874.1 gi|529078517|ref|YP_008377520.1| - 0.027 14.1 0.4 0.79 9.3 0.0 2.5 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 Allexi_40kDa PF05549.6 gi|529078517|ref|YP_008377520.1| - 0.038 13.3 2.8 0.11 11.8 0.6 2.1 1 1 1 2 2 2 0 Allexivirus 40kDa protein DZR PF12773.2 gi|529078517|ref|YP_008377520.1| - 0.065 13.0 0.6 0.13 12.1 0.4 1.4 1 0 0 1 1 1 0 Double zinc ribbon MscS_porin PF12795.2 gi|529078517|ref|YP_008377520.1| - 0.077 12.3 3.1 0.093 12.0 1.5 1.4 1 1 0 1 1 1 0 Mechanosensitive ion channel porin domain DUF2408 PF10303.4 gi|529078517|ref|YP_008377520.1| - 0.11 12.5 0.7 0.37 10.9 0.4 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) DUF4140 PF13600.1 gi|529078517|ref|YP_008377520.1| - 0.13 12.7 16.1 0.73 10.3 1.6 3.5 1 1 2 3 3 3 0 N-terminal domain of unknown function (DUF4140) IncA PF04156.9 gi|529078517|ref|YP_008377520.1| - 0.13 11.8 4.9 4.2 6.9 3.3 2.4 1 1 0 1 1 1 0 IncA protein zf-ribbon_3 PF13248.1 gi|529078517|ref|YP_008377520.1| - 0.14 11.4 1.1 12 5.2 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-C3HC4_3 PF13920.1 gi|529078517|ref|YP_008377520.1| - 0.16 11.6 0.7 0.25 11.0 0.5 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) FANCI_S4 PF14678.1 gi|529078517|ref|YP_008377520.1| - 0.17 10.9 1.3 0.46 9.5 0.2 2.0 1 1 1 2 2 2 0 FANCI solenoid 4 Reo_sigmaC PF04582.7 gi|529078517|ref|YP_008377520.1| - 0.18 10.9 7.7 0.51 9.4 5.3 1.7 1 1 0 1 1 1 0 Reovirus sigma C capsid protein Apolipoprotein PF01442.13 gi|529078517|ref|YP_008377520.1| - 0.22 11.0 5.4 3.6 7.0 0.5 2.3 1 1 0 2 2 2 0 Apolipoprotein A1/A4/E domain Prefoldin_3 PF13758.1 gi|529078517|ref|YP_008377520.1| - 0.25 11.1 3.1 1.1 9.0 0.2 2.7 2 1 0 3 3 3 0 Prefoldin subunit Syntaxin PF00804.20 gi|529078517|ref|YP_008377520.1| - 0.26 11.4 7.3 3.4 7.8 1.1 2.4 1 1 1 2 2 2 0 Syntaxin NPV_P10 PF05531.7 gi|529078517|ref|YP_008377520.1| - 0.28 11.4 11.6 1.6 9.0 3.5 3.1 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein HSBP1 PF06825.7 gi|529078517|ref|YP_008377520.1| - 0.3 10.6 5.2 9.5 5.8 0.3 3.2 3 0 0 3 3 3 0 Heat shock factor binding protein 1 Lar_restr_allev PF14354.1 gi|529078517|ref|YP_008377520.1| - 0.31 11.3 3.0 6.8 7.0 0.1 2.6 1 1 1 2 2 2 0 Restriction alleviation protein Lar Nudix_N_2 PF14803.1 gi|529078517|ref|YP_008377520.1| - 0.7 9.6 5.5 4 7.2 0.3 2.4 1 1 1 2 2 2 0 Nudix N-terminal COG2 PF06148.6 gi|529078517|ref|YP_008377520.1| - 0.83 9.5 5.4 2.4 8.0 0.7 2.4 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Osmo_CC PF08946.5 gi|529078517|ref|YP_008377520.1| - 0.85 9.6 7.2 1 9.4 0.0 3.7 4 0 0 4 4 4 0 Osmosensory transporter coiled coil Phage_GPO PF05929.6 gi|529078517|ref|YP_008377520.1| - 1.5 8.0 12.2 0.5 9.5 1.5 2.1 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase PilJ PF13675.1 gi|529078517|ref|YP_008377520.1| - 2.1 8.6 9.6 8.7 6.7 3.2 2.5 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term YkyA PF10368.4 gi|529078517|ref|YP_008377520.1| - 2.4 7.4 4.9 3.1 7.0 1.7 1.9 1 1 1 2 2 2 0 Putative cell-wall binding lipoprotein DUF1664 PF07889.7 gi|529078517|ref|YP_008377520.1| - 3.2 7.5 5.8 40 4.0 3.3 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) Sipho_Gp157 PF05565.6 gi|529078517|ref|YP_008377520.1| - 9.3 5.8 9.0 4.2 6.9 1.5 2.2 1 1 1 2 2 2 0 Siphovirus Gp157 TFIIS_C PF01096.13 gi|529078519|ref|YP_008377522.1| - 1.7e-17 62.7 6.0 4e-17 61.5 1.1 2.3 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) Zn_Tnp_IS1595 PF12760.2 gi|529078519|ref|YP_008377522.1| - 9.1e-07 28.5 2.0 8.2e-05 22.3 0.2 2.2 2 0 0 2 2 2 1 Transposase zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|529078519|ref|YP_008377522.1| - 1.7e-05 24.1 6.9 0.15 11.5 0.3 3.2 3 0 0 3 3 3 3 DNA directed RNA polymerase, 7 kDa subunit DZR PF12773.2 gi|529078519|ref|YP_008377522.1| - 0.00018 21.2 3.6 0.04 13.7 0.5 2.3 2 1 0 2 2 2 2 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|529078519|ref|YP_008377522.1| - 0.0028 17.5 3.7 3 7.8 0.1 3.4 3 0 0 3 3 3 1 Zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|529078519|ref|YP_008377522.1| - 0.0046 16.5 5.4 1.7 8.3 2.0 3.0 2 1 1 3 3 3 1 Putative transposase DNA-binding domain RNA_POL_M_15KD PF02150.11 gi|529078519|ref|YP_008377522.1| - 0.0047 16.5 0.3 0.0047 16.5 0.2 3.0 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit zf-piccolo PF05715.8 gi|529078519|ref|YP_008377522.1| - 0.0059 16.5 2.5 0.16 11.9 0.0 2.8 1 1 1 3 3 3 1 Piccolo Zn-finger PhnA_Zn_Ribbon PF08274.7 gi|529078519|ref|YP_008377522.1| - 0.0074 16.0 7.7 3.3 7.5 0.2 3.2 3 0 0 3 3 3 1 PhnA Zinc-Ribbon UPF0547 PF10571.4 gi|529078519|ref|YP_008377522.1| - 0.0078 15.8 8.1 0.069 12.8 2.4 2.9 2 1 0 2 2 2 1 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|529078519|ref|YP_008377522.1| - 0.021 14.0 10.6 0.84 8.9 0.0 3.5 4 0 0 4 4 4 0 zinc-ribbon domain DUF2318 PF10080.4 gi|529078519|ref|YP_008377522.1| - 0.027 14.2 3.1 7 6.4 0.0 2.9 2 1 1 3 3 3 0 Predicted membrane protein (DUF2318) ADK_lid PF05191.9 gi|529078519|ref|YP_008377522.1| - 0.028 14.0 5.7 0.52 10.0 0.2 3.3 3 0 0 3 3 3 0 Adenylate kinase, active site lid PHD PF00628.24 gi|529078519|ref|YP_008377522.1| - 0.037 13.7 3.1 0.22 11.2 0.3 2.3 2 0 0 2 2 2 0 PHD-finger GATA PF00320.22 gi|529078519|ref|YP_008377522.1| - 0.037 13.3 4.2 3.3 7.1 0.0 2.9 3 0 0 3 3 3 0 GATA zinc finger A2L_zn_ribbon PF08792.5 gi|529078519|ref|YP_008377522.1| - 0.04 13.3 8.9 1.4 8.4 0.0 3.5 3 0 0 3 3 3 0 A2L zinc ribbon domain Nudix_N_2 PF14803.1 gi|529078519|ref|YP_008377522.1| - 0.044 13.4 5.6 10 5.9 0.1 3.2 3 0 0 3 3 3 0 Nudix N-terminal TF_Zn_Ribbon PF08271.7 gi|529078519|ref|YP_008377522.1| - 0.057 12.7 9.9 3.1 7.1 0.1 3.5 3 1 0 3 3 3 0 TFIIB zinc-binding zf-NADH-PPase PF09297.6 gi|529078519|ref|YP_008377522.1| - 0.059 12.8 8.4 0.26 10.8 0.2 3.2 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Zn_ribbon_recom PF13408.1 gi|529078519|ref|YP_008377522.1| - 0.073 13.3 1.3 11 6.3 0.1 3.0 3 0 0 3 3 3 0 Recombinase zinc beta ribbon domain Lac_bphage_repr PF06543.7 gi|529078519|ref|YP_008377522.1| - 0.13 11.7 0.4 0.18 11.3 0.3 1.2 1 0 0 1 1 1 0 Lactococcus bacteriophage repressor zinc_ribbon_4 PF13717.1 gi|529078519|ref|YP_008377522.1| - 0.13 11.9 6.8 0.47 10.1 0.5 3.1 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|529078519|ref|YP_008377522.1| - 0.13 11.8 6.4 0.36 10.4 0.4 3.0 3 0 0 3 3 3 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|529078519|ref|YP_008377522.1| - 0.14 12.5 6.5 4.2 7.7 1.6 2.5 1 1 2 3 3 3 0 Restriction alleviation protein Lar zinc_ribbon_2 PF13240.1 gi|529078519|ref|YP_008377522.1| - 0.14 11.7 8.5 4 7.0 0.1 3.2 3 0 0 3 3 3 0 zinc-ribbon domain zf-trcl PF13451.1 gi|529078519|ref|YP_008377522.1| - 0.16 11.6 5.2 24 4.6 0.1 3.2 3 0 0 3 3 3 0 Probable zinc-binding domain Cytochrome_C554 PF13435.1 gi|529078519|ref|YP_008377522.1| - 0.3 11.1 2.4 0.57 10.2 1.7 1.4 1 1 0 1 1 1 0 Cytochrome c554 and c-prime HypA PF01155.14 gi|529078519|ref|YP_008377522.1| - 0.41 10.3 4.5 1.2 8.8 0.4 2.3 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family Herpes_UL49_1 PF03117.9 gi|529078519|ref|YP_008377522.1| - 0.53 9.3 2.5 3.1 6.8 0.1 2.6 2 1 0 2 2 2 0 UL49 family Trm112p PF03966.11 gi|529078519|ref|YP_008377522.1| - 0.6 10.5 2.2 37 4.7 0.1 2.9 3 0 0 3 3 3 0 Trm112p-like protein Sgf11 PF08209.6 gi|529078519|ref|YP_008377522.1| - 0.84 8.9 4.7 16 4.8 0.0 2.9 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) DUF4428 PF14471.1 gi|529078519|ref|YP_008377522.1| - 0.93 9.2 4.1 4.5 7.1 0.0 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4428) RRN7 PF11781.3 gi|529078519|ref|YP_008377522.1| - 0.98 8.9 8.2 12 5.4 0.1 3.3 3 0 0 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 Prok-RING_1 PF14446.1 gi|529078519|ref|YP_008377522.1| - 1.1 9.0 6.5 4.4 7.1 0.2 3.1 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 IBR PF01485.16 gi|529078519|ref|YP_008377522.1| - 1.2 9.0 6.2 15 5.5 1.2 2.9 2 1 0 2 2 2 0 IBR domain Cytochrom_CIII PF02085.11 gi|529078519|ref|YP_008377522.1| - 2.2 8.4 5.7 11 6.2 0.8 2.8 1 1 1 2 2 2 0 Class III cytochrome C family zf-3CxxC PF13695.1 gi|529078519|ref|YP_008377522.1| - 3 8.1 5.6 5.6 7.2 0.8 2.2 2 0 0 2 2 2 0 Zinc-binding domain DUF1451 PF07295.6 gi|529078519|ref|YP_008377522.1| - 7.2 6.3 9.8 18 5.1 3.2 2.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1451) RHH_1 PF01402.16 gi|529078521|ref|YP_008377524.1| - 3.2e-06 26.7 0.3 7.9e-06 25.5 0.2 1.7 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family DUF2191 PF09957.4 gi|529078521|ref|YP_008377524.1| - 1.4e-05 24.7 1.6 7.2e-05 22.5 0.8 2.4 2 0 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2191) DUF1160 PF06648.6 gi|529078521|ref|YP_008377524.1| - 0.0031 17.3 0.0 0.0037 17.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1160) DUF1778 PF08681.6 gi|529078521|ref|YP_008377524.1| - 0.075 12.8 0.2 0.13 12.1 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1778) PSK_trans_fac PF07704.6 gi|529078521|ref|YP_008377524.1| - 0.092 13.4 0.6 0.15 12.7 0.2 1.6 1 1 0 1 1 1 0 Rv0623-like transcription factor DUF2482 PF10655.4 gi|529078521|ref|YP_008377524.1| - 0.098 12.7 0.2 0.13 12.3 0.2 1.3 1 0 0 1 1 1 0 Hypothetical protein of unknown function (DUF2482) ABC2_membrane_4 PF12730.2 gi|529078522|ref|YP_008377525.1| - 0.19 10.8 19.3 0.69 9.0 13.4 1.9 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC_tran PF00005.22 gi|529078523|ref|YP_008377526.1| - 1.5e-25 90.0 0.0 2.1e-25 89.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|529078523|ref|YP_008377526.1| - 5.8e-18 65.8 0.0 2.7e-12 47.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|529078523|ref|YP_008377526.1| - 0.00075 19.5 0.0 0.0011 18.9 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|529078523|ref|YP_008377526.1| - 0.0018 18.4 0.0 0.0029 17.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|529078523|ref|YP_008377526.1| - 0.0048 17.2 0.0 0.0072 16.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|529078523|ref|YP_008377526.1| - 0.019 14.4 0.0 3.4 7.0 0.1 2.1 1 1 1 2 2 2 0 AAA-like domain SbcCD_C PF13558.1 gi|529078523|ref|YP_008377526.1| - 0.042 13.7 0.0 0.079 12.8 0.0 1.5 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.1 gi|529078523|ref|YP_008377526.1| - 0.05 13.1 0.0 0.12 11.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|529078523|ref|YP_008377526.1| - 0.081 12.4 0.1 0.14 11.6 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain IstB_IS21 PF01695.12 gi|529078523|ref|YP_008377526.1| - 0.081 12.3 0.0 7.2 5.9 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein SRP54 PF00448.17 gi|529078523|ref|YP_008377526.1| - 0.11 11.9 0.0 0.2 11.0 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain HTH_3 PF01381.17 gi|529078524|ref|YP_008377527.1| - 3.7e-15 55.4 0.0 4.5e-15 55.2 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|529078524|ref|YP_008377527.1| - 8.4e-11 41.9 0.1 9.8e-11 41.7 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|529078524|ref|YP_008377527.1| - 2.9e-10 40.0 0.0 3.2e-10 39.8 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|529078524|ref|YP_008377527.1| - 0.00063 19.0 0.0 0.00093 18.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_25 PF13413.1 gi|529078524|ref|YP_008377527.1| - 0.0016 18.0 0.1 0.0017 17.9 0.1 1.2 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|529078524|ref|YP_008377527.1| - 0.0017 17.9 0.1 0.0027 17.3 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.1 gi|529078524|ref|YP_008377527.1| - 0.0026 17.2 0.1 0.0051 16.3 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|529078524|ref|YP_008377527.1| - 0.0079 15.9 0.0 0.012 15.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|529078524|ref|YP_008377527.1| - 0.0092 15.5 0.3 0.018 14.5 0.2 1.6 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain Sigma70_r4 PF04545.11 gi|529078524|ref|YP_008377527.1| - 0.012 14.8 0.2 0.017 14.4 0.1 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Crp_2 PF13545.1 gi|529078524|ref|YP_008377527.1| - 0.016 15.0 0.0 0.023 14.4 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_11 PF08279.7 gi|529078524|ref|YP_008377527.1| - 0.016 14.8 0.2 0.022 14.3 0.2 1.2 1 0 0 1 1 1 0 HTH domain HTH_26 PF13443.1 gi|529078524|ref|YP_008377527.1| - 0.021 15.0 0.0 0.026 14.6 0.0 1.1 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain MerR PF00376.18 gi|529078524|ref|YP_008377527.1| - 0.03 13.8 0.1 0.062 12.8 0.0 1.5 1 1 0 1 1 1 0 MerR family regulatory protein HTH_28 PF13518.1 gi|529078524|ref|YP_008377527.1| - 0.044 13.7 0.0 0.066 13.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|529078524|ref|YP_008377527.1| - 0.045 13.4 0.0 0.065 12.9 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_7 PF02796.10 gi|529078524|ref|YP_008377527.1| - 0.047 13.5 0.4 0.079 12.8 0.1 1.5 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase YwiC PF14256.1 gi|529078525|ref|YP_008377528.1| - 0.0016 18.5 4.7 0.0028 17.7 3.3 1.5 1 1 0 1 1 1 1 YwiC-like protein DUF1469 PF07332.6 gi|529078525|ref|YP_008377528.1| - 0.0043 16.7 2.1 0.0043 16.7 1.5 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF1469) DUF4131 PF13567.1 gi|529078525|ref|YP_008377528.1| - 0.012 15.0 1.9 0.014 14.7 1.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) MscS_TM PF12794.2 gi|529078525|ref|YP_008377528.1| - 0.026 13.1 0.2 0.029 13.0 0.2 1.2 1 0 0 1 1 1 0 Mechanosensitive ion channel inner membrane domain 1 DUF4383 PF14325.1 gi|529078525|ref|YP_008377528.1| - 0.13 12.2 2.4 0.25 11.3 1.7 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4383) DUF4407 PF14362.1 gi|529078525|ref|YP_008377528.1| - 0.19 10.6 1.9 0.28 10.0 1.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Copper-bind PF00127.15 gi|529078526|ref|YP_008377529.1| - 4.3e-08 33.2 0.1 4.4e-08 33.2 0.1 1.1 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Zip PF02535.17 gi|529078527|ref|YP_008377530.1| - 0.00019 20.5 5.9 0.00019 20.5 4.1 2.3 1 1 1 2 2 2 2 ZIP Zinc transporter VitK2_biosynth PF02621.9 gi|529078527|ref|YP_008377530.1| - 0.15 11.2 0.1 0.2 10.8 0.0 1.2 1 0 0 1 1 1 0 Menaquinone biosynthesis Amino_oxidase PF01593.19 gi|529078528|ref|YP_008377531.1| - 1.7e-23 83.4 1.6 1.3e-21 77.2 1.1 2.7 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|529078528|ref|YP_008377531.1| - 5.9e-17 61.4 0.1 1.4e-16 60.2 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|529078528|ref|YP_008377531.1| - 1.9e-16 59.9 0.3 7.4e-09 34.9 0.0 2.7 2 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|529078528|ref|YP_008377531.1| - 1.1e-09 38.6 0.0 0.0002 21.4 0.0 2.7 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|529078528|ref|YP_008377531.1| - 7.1e-08 32.7 3.7 4e-05 23.9 0.2 3.0 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|529078528|ref|YP_008377531.1| - 1.1e-07 30.7 1.5 0.00044 18.8 0.4 2.3 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_2 PF00890.19 gi|529078528|ref|YP_008377531.1| - 2.9e-07 29.6 0.9 1.1e-06 27.8 0.6 1.8 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.2 gi|529078528|ref|YP_008377531.1| - 5.3e-07 29.0 0.0 1.1e-06 28.0 0.0 1.6 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|529078528|ref|YP_008377531.1| - 6.6e-07 29.3 0.0 2.6e-05 24.2 0.0 2.8 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|529078528|ref|YP_008377531.1| - 1.9e-06 27.1 0.9 3.4e-06 26.3 0.1 1.8 2 0 0 2 2 2 1 FAD binding domain Thi4 PF01946.12 gi|529078528|ref|YP_008377531.1| - 3.6e-05 22.9 0.1 8.3e-05 21.7 0.0 1.6 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.17 gi|529078528|ref|YP_008377531.1| - 0.00018 20.5 0.7 0.00035 19.5 0.5 1.5 1 0 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_9 PF13454.1 gi|529078528|ref|YP_008377531.1| - 0.0002 21.1 2.4 0.06 13.1 0.1 2.7 2 0 0 2 2 2 2 FAD-NAD(P)-binding Strep_67kDa_ant PF06100.6 gi|529078528|ref|YP_008377531.1| - 0.0078 14.6 0.0 0.011 14.1 0.0 1.2 1 0 0 1 1 1 1 Streptococcal 67 kDa myosin-cross-reactive antigen like family 3HCDH_N PF02737.13 gi|529078528|ref|YP_008377531.1| - 0.038 13.6 0.2 0.065 12.8 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Trp_halogenase PF04820.9 gi|529078528|ref|YP_008377531.1| - 0.044 12.4 0.9 0.065 11.8 0.1 1.6 2 0 0 2 2 2 0 Tryptophan halogenase ApbA PF02558.11 gi|529078528|ref|YP_008377531.1| - 0.079 12.3 0.6 0.45 9.9 0.2 2.0 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.1 gi|529078528|ref|YP_008377531.1| - 0.093 12.9 0.0 0.21 11.8 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding Lycopene_cycl PF05834.7 gi|529078528|ref|YP_008377531.1| - 0.097 11.5 0.3 0.16 10.8 0.2 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein AlaDh_PNT_C PF01262.16 gi|529078528|ref|YP_008377531.1| - 0.15 11.6 0.5 0.37 10.3 0.1 1.8 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain UbiA PF01040.13 gi|529078529|ref|YP_008377532.1| - 9.5e-29 100.3 21.7 1.2e-28 99.9 15.0 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF422 PF04240.7 gi|529078530|ref|YP_008377533.1| - 8.8e-64 214.8 19.9 6.3e-63 212.0 13.8 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF422) DUF2512 PF10710.4 gi|529078530|ref|YP_008377533.1| - 8 5.9 6.1 0.92 8.9 0.9 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2512) CitG PF01874.11 gi|529078531|ref|YP_008377534.1| - 0.0041 16.3 0.7 0.0046 16.1 0.5 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase Hpt PF01627.18 gi|529078531|ref|YP_008377534.1| - 0.0051 16.7 1.9 0.0075 16.2 1.2 1.3 1 1 0 1 1 1 1 Hpt domain HrpB7 PF09486.5 gi|529078531|ref|YP_008377534.1| - 0.031 14.2 5.3 0.069 13.0 1.1 2.0 1 1 1 2 2 2 0 Bacterial type III secretion protein (HrpB7) WXG100 PF06013.7 gi|529078531|ref|YP_008377534.1| - 0.46 10.5 3.7 18 5.3 0.3 2.7 2 1 1 3 3 3 0 Proteins of 100 residues with WXG DUF4398 PF14346.1 gi|529078531|ref|YP_008377534.1| - 2.7 8.0 7.2 2.3 8.3 3.4 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4398) MCPsignal PF00015.16 gi|529078533|ref|YP_008377536.1| - 5.6e-46 156.7 77.4 1.4e-45 155.4 24.5 5.0 2 1 3 5 5 5 3 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|529078533|ref|YP_008377536.1| - 1.5e-08 34.6 0.3 1.5e-08 34.6 0.2 6.5 6 1 1 7 7 7 2 HAMP domain Spc7 PF08317.6 gi|529078533|ref|YP_008377536.1| - 0.0076 14.9 38.9 0.021 13.5 2.2 4.0 2 1 0 4 4 4 3 Spc7 kinetochore protein IL10 PF00726.12 gi|529078533|ref|YP_008377536.1| - 0.046 13.0 0.2 3.2 7.0 0.0 3.1 2 1 1 3 3 3 0 Interleukin 10 VPS11_C PF12451.3 gi|529078533|ref|YP_008377536.1| - 0.16 11.8 1.6 0.79 9.6 0.4 2.7 3 0 0 3 3 3 0 Vacuolar protein sorting protein 11 C terminal YbhQ PF11076.3 gi|529078533|ref|YP_008377536.1| - 0.26 10.8 0.0 0.54 9.8 0.0 1.4 1 0 0 1 1 1 0 Putative inner membrane protein YbhQ DUF948 PF06103.6 gi|529078533|ref|YP_008377536.1| - 1.3 8.9 44.2 0.45 10.4 0.5 8.1 4 2 4 8 8 8 0 Bacterial protein of unknown function (DUF948) NPV_P10 PF05531.7 gi|529078533|ref|YP_008377536.1| - 1.3 9.3 34.9 0.33 11.2 1.1 6.9 3 2 3 6 6 6 0 Nucleopolyhedrovirus P10 protein Laminin_II PF06009.7 gi|529078533|ref|YP_008377536.1| - 8 6.2 47.2 0.24 11.1 1.1 5.7 3 2 3 6 6 6 0 Laminin Domain II Ribosom_S12_S23 PF00164.20 gi|529078534|ref|YP_008377537.1| - 8.8e-41 138.1 0.2 1e-40 137.9 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S12/S23 Ribosomal_S7 PF00177.16 gi|529078535|ref|YP_008377538.1| - 4.5e-37 126.8 4.0 5.3e-37 126.6 2.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e Ribosomal_L15e PF00827.12 gi|529078536|ref|YP_008377539.1| - 9.1e-84 279.7 7.0 1.1e-83 279.4 4.9 1.0 1 0 0 1 1 1 1 Ribosomal L15 Regulator_TrmB PF11495.3 gi|529078537|ref|YP_008377540.1| - 9.4e-43 145.8 0.0 1.2e-42 145.5 0.0 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.14 gi|529078537|ref|YP_008377540.1| - 1.3e-13 50.4 0.0 2.3e-13 49.6 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|529078537|ref|YP_008377540.1| - 0.014 15.0 0.0 0.038 13.6 0.0 1.8 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.5 gi|529078537|ref|YP_008377540.1| - 0.031 13.8 0.0 0.13 11.8 0.0 2.0 2 0 0 2 2 2 0 IclR helix-turn-helix domain DUF2250 PF10007.4 gi|529078537|ref|YP_008377540.1| - 0.035 14.0 0.0 0.064 13.1 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_24 PF13412.1 gi|529078537|ref|YP_008377540.1| - 0.1 11.9 0.0 0.18 11.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Cellulase PF00150.13 gi|529078538|ref|YP_008377541.1| - 8e-31 107.2 1.2 1.1e-30 106.8 0.8 1.2 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) fn3 PF00041.16 gi|529078538|ref|YP_008377541.1| - 1.9e-11 43.9 1.3 4.7e-11 42.6 0.9 1.7 1 0 0 1 1 1 1 Fibronectin type III domain TAT_signal PF10518.4 gi|529078538|ref|YP_008377541.1| - 0.0023 17.8 3.2 0.0098 15.8 2.2 2.2 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence fn3 PF00041.16 gi|529078539|ref|YP_008377542.1| - 9.2e-27 93.0 12.2 2.8e-14 52.9 1.1 3.3 3 0 0 3 3 3 2 Fibronectin type III domain Cellulase PF00150.13 gi|529078539|ref|YP_008377542.1| - 8e-20 71.1 8.9 3.1e-19 69.2 6.1 1.9 1 1 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) Big_3_4 PF13754.1 gi|529078539|ref|YP_008377542.1| - 9.5e-07 29.0 64.1 2e-05 24.8 9.8 5.4 4 2 1 5 5 4 3 Bacterial Ig-like domain (group 3) PKD PF00801.15 gi|529078539|ref|YP_008377542.1| - 1.5e-06 27.8 4.5 1.5e-06 27.8 3.1 3.9 3 0 0 3 3 3 1 PKD domain TAT_signal PF10518.4 gi|529078539|ref|YP_008377542.1| - 0.00051 19.8 0.4 0.002 17.9 0.3 2.1 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Big_3_2 PF12245.3 gi|529078539|ref|YP_008377542.1| - 0.00067 19.1 1.1 2 8.0 0.1 3.7 3 0 0 3 3 3 2 Bacterial Ig-like domain (group 3) DUF2369 PF10179.4 gi|529078539|ref|YP_008377542.1| - 0.023 13.8 2.9 12 4.9 0.0 3.6 2 1 0 3 3 3 0 Uncharacterised conserved protein (DUF2369) SusE PF14292.1 gi|529078539|ref|YP_008377542.1| - 0.042 13.6 14.5 0.16 11.8 1.0 3.6 2 1 1 3 3 3 0 SusE outer membrane protein Y_Y_Y PF07495.8 gi|529078539|ref|YP_008377542.1| - 0.045 13.4 0.3 2.2 8.0 0.0 3.4 3 1 0 3 3 3 0 Y_Y_Y domain Big_3_3 PF13750.1 gi|529078539|ref|YP_008377542.1| - 0.05 13.0 5.5 4.2 6.7 0.1 3.6 3 0 0 3 3 3 0 Bacterial Ig-like domain (group 3) Cadherin PF00028.12 gi|529078539|ref|YP_008377542.1| - 1.1 9.5 4.9 14 6.0 0.3 3.3 3 0 0 3 3 3 0 Cadherin domain A2M_N PF01835.14 gi|529078539|ref|YP_008377542.1| - 1.1 9.5 5.0 4.8 7.5 0.3 3.5 3 1 1 4 4 4 0 MG2 domain Glyco_hydro_12 PF01670.11 gi|529078540|ref|YP_008377543.1| - 1.7e-10 40.9 2.3 3e-10 40.1 1.6 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 12 TAT_signal PF10518.4 gi|529078540|ref|YP_008377543.1| - 0.2 11.7 4.4 0.61 10.2 3.0 1.8 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Neisseria_TspB PF05616.8 gi|529078540|ref|YP_008377543.1| - 2 6.7 4.8 2.8 6.2 3.3 1.2 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein ORC6 PF05460.8 gi|529078540|ref|YP_008377543.1| - 2.4 7.1 6.5 3.5 6.6 4.5 1.1 1 0 0 1 1 1 0 Origin recognition complex subunit 6 (ORC6) Glyco_hydro_10 PF00331.15 gi|529078541|ref|YP_008377544.1| - 4.8e-33 114.5 3.0 7.3e-33 113.9 2.1 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 10 fn3 PF00041.16 gi|529078541|ref|YP_008377544.1| - 5.4e-11 42.4 0.2 5.4e-11 42.4 0.2 2.1 2 0 0 2 2 2 1 Fibronectin type III domain UCR_Fe-S_N PF10399.4 gi|529078541|ref|YP_008377544.1| - 0.057 12.5 2.6 0.14 11.3 1.8 1.7 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Glyco_hydro_10 PF00331.15 gi|529078542|ref|YP_008377545.1| - 1.6e-35 122.6 4.5 2.5e-35 122.0 3.1 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 10 PKD PF00801.15 gi|529078542|ref|YP_008377545.1| - 6.2e-15 54.6 25.6 5.3e-11 42.0 6.8 5.3 3 2 1 4 4 4 2 PKD domain fn3 PF00041.16 gi|529078542|ref|YP_008377545.1| - 4.7e-10 39.4 0.2 4.7e-10 39.4 0.1 3.1 4 0 0 4 4 4 1 Fibronectin type III domain ATS3 PF06232.6 gi|529078542|ref|YP_008377545.1| - 0.11 12.1 1.1 5.9 6.5 0.0 2.5 2 0 0 2 2 2 0 Embryo-specific protein 3, (ATS3) DUF1628 PF07790.6 gi|529078542|ref|YP_008377545.1| - 6.4 7.5 8.9 13 6.5 0.3 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF1628) fn3 PF00041.16 gi|529078543|ref|YP_008377546.1| - 8.9e-26 89.8 1.8 1.3e-12 47.6 0.1 2.6 2 0 0 2 2 2 2 Fibronectin type III domain Cellulase PF00150.13 gi|529078543|ref|YP_008377546.1| - 2.4e-25 89.3 0.1 6.2e-25 87.9 0.1 1.6 1 1 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) Big_3_4 PF13754.1 gi|529078543|ref|YP_008377546.1| - 1.3e-07 31.8 25.8 0.00062 20.0 3.7 2.9 2 0 0 2 2 2 2 Bacterial Ig-like domain (group 3) ChitinaseA_N PF08329.5 gi|529078543|ref|YP_008377546.1| - 0.0011 18.7 10.1 0.072 12.8 2.6 2.3 1 1 1 2 2 2 2 Chitinase A, N-terminal domain DUF2369 PF10179.4 gi|529078543|ref|YP_008377546.1| - 0.0019 17.3 0.1 0.92 8.5 0.0 2.8 1 1 2 3 3 3 2 Uncharacterised conserved protein (DUF2369) SusE PF14292.1 gi|529078543|ref|YP_008377546.1| - 0.011 15.5 2.9 3.2 7.6 0.8 2.7 2 1 0 2 2 2 0 SusE outer membrane protein Big_3_2 PF12245.3 gi|529078543|ref|YP_008377546.1| - 0.04 13.4 0.7 5 6.7 0.1 2.6 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 3) TAT_signal PF10518.4 gi|529078543|ref|YP_008377546.1| - 0.8 9.8 10.7 12 6.1 7.4 3.0 1 1 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence PKD PF00801.15 gi|529078544|ref|YP_008377547.1| - 5.2e-11 42.1 9.7 2.1e-10 40.1 6.7 2.1 1 0 0 1 1 1 1 PKD domain Pec_lyase_C PF00544.14 gi|529078544|ref|YP_008377547.1| - 2.5e-07 30.3 0.2 4.4e-07 29.5 0.1 1.4 1 0 0 1 1 1 1 Pectate lyase fn3 PF00041.16 gi|529078545|ref|YP_008377548.1| - 6.6e-28 96.6 10.3 6.5e-11 42.2 0.1 4.5 4 0 0 4 4 4 3 Fibronectin type III domain Cellulase PF00150.13 gi|529078545|ref|YP_008377548.1| - 3.7e-26 91.9 1.4 1.1e-25 90.4 0.9 1.7 1 1 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) CBM_6 PF03422.10 gi|529078545|ref|YP_008377548.1| - 5.8e-21 74.9 4.6 5.8e-21 74.9 3.2 3.6 4 1 0 4 4 4 1 Carbohydrate binding module (family 6) Big_3_2 PF12245.3 gi|529078545|ref|YP_008377548.1| - 1.3e-05 24.6 3.8 1.3 8.5 0.0 4.3 4 0 0 4 4 4 3 Bacterial Ig-like domain (group 3) Big_3_4 PF13754.1 gi|529078545|ref|YP_008377548.1| - 0.00043 20.5 56.2 0.0012 19.0 4.9 5.7 6 0 0 6 6 6 3 Bacterial Ig-like domain (group 3) Glyco_hydro_cc PF11790.3 gi|529078545|ref|YP_008377548.1| - 0.0063 15.9 0.1 0.018 14.4 0.1 1.7 1 1 0 1 1 1 1 Glycosyl hydrolase catalytic core Big_3_3 PF13750.1 gi|529078545|ref|YP_008377548.1| - 0.017 14.5 4.1 3.4 7.0 0.1 3.5 3 0 0 3 3 3 0 Bacterial Ig-like domain (group 3) NAD_binding_11 PF14833.1 gi|529078545|ref|YP_008377548.1| - 0.035 14.1 0.0 0.19 11.7 0.0 2.1 2 0 0 2 2 2 0 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DUF2369 PF10179.4 gi|529078545|ref|YP_008377548.1| - 0.2 10.7 0.1 17 4.3 0.0 3.1 3 1 0 3 3 3 0 Uncharacterised conserved protein (DUF2369) Glyco_hydro_9 PF00759.14 gi|529078546|ref|YP_008377549.1| - 7.3e-101 338.2 14.0 9.9e-101 337.8 9.7 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 9 fn3 PF00041.16 gi|529078546|ref|YP_008377549.1| - 1.2e-10 41.3 0.1 4.2e-10 39.6 0.1 2.0 1 0 0 1 1 1 1 Fibronectin type III domain CBM_3 PF00942.13 gi|529078546|ref|YP_008377549.1| - 1.1e-06 28.5 0.0 2.8e-06 27.2 0.0 1.7 1 0 0 1 1 1 1 Cellulose binding domain Big_3_4 PF13754.1 gi|529078546|ref|YP_008377549.1| - 0.012 15.9 6.3 0.012 15.9 4.4 3.2 3 0 0 3 3 3 0 Bacterial Ig-like domain (group 3) DUF1830 PF08865.6 gi|529078547|ref|YP_008377550.1| - 0.068 12.7 0.0 10 5.8 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1830) RIO1 PF01163.17 gi|529078548|ref|YP_008377551.1| - 6.6e-48 162.5 0.2 8.5e-48 162.2 0.2 1.1 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.6 gi|529078548|ref|YP_008377551.1| - 1.8e-28 98.4 0.0 3.6e-28 97.4 0.0 1.5 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.18 gi|529078548|ref|YP_008377551.1| - 1.5e-05 24.8 1.5 0.086 12.5 0.8 2.5 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.20 gi|529078548|ref|YP_008377551.1| - 8.6e-05 21.8 0.0 0.00012 21.2 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain DUF2513 PF10711.4 gi|529078548|ref|YP_008377551.1| - 0.037 14.1 0.0 0.15 12.1 0.0 1.9 2 0 0 2 2 2 0 Hypothetical protein (DUF2513) ComZ PF10815.3 gi|529078548|ref|YP_008377551.1| - 0.12 12.1 0.1 0.29 10.9 0.0 1.7 1 0 0 1 1 1 0 ComZ WaaY PF06176.6 gi|529078548|ref|YP_008377551.1| - 0.13 11.4 0.0 0.2 10.8 0.0 1.2 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) DDE_Tnp_IS1595 PF12762.2 gi|529078550|ref|YP_008377553.1| - 2.3e-10 40.4 0.1 2.4e-10 40.4 0.1 1.1 1 0 0 1 1 1 1 ISXO2-like transposase domain DDE_Tnp_IS240 PF13610.1 gi|529078550|ref|YP_008377553.1| - 0.026 14.4 0.0 0.034 14.1 0.0 1.1 1 0 0 1 1 1 0 DDE domain AP_endonuc_2 PF01261.19 gi|529078551|ref|YP_008377554.1| - 2.7e-26 92.2 3.1 1e-25 90.3 1.0 1.9 2 0 0 2 2 2 2 Xylose isomerase-like TIM barrel Methyltransf_11 PF08241.7 gi|529078552|ref|YP_008377555.1| - 1.6e-16 60.5 0.1 5.2e-16 58.9 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|529078552|ref|YP_008377555.1| - 2.9e-10 39.9 0.0 1.3e-09 37.8 0.0 2.1 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|529078552|ref|YP_008377555.1| - 2e-09 37.3 0.0 2.6e-09 36.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|529078552|ref|YP_008377555.1| - 2.9e-08 34.0 0.0 1e-07 32.2 0.0 2.0 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|529078552|ref|YP_008377555.1| - 1.2e-06 28.9 0.1 1.3e-05 25.6 0.0 2.6 3 1 0 3 3 3 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|529078552|ref|YP_008377555.1| - 5.8e-06 26.8 0.9 0.00014 22.4 0.2 2.8 2 2 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|529078552|ref|YP_008377555.1| - 9.7e-05 21.5 0.0 0.00067 18.8 0.0 2.1 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family RrnaAD PF00398.15 gi|529078552|ref|YP_008377555.1| - 0.00013 21.0 0.0 0.00017 20.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|529078552|ref|YP_008377555.1| - 0.0015 18.5 2.4 0.005 16.8 1.6 2.1 1 1 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|529078552|ref|YP_008377555.1| - 0.0083 15.5 0.0 0.018 14.4 0.0 1.5 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_32 PF13679.1 gi|529078552|ref|YP_008377555.1| - 0.064 12.9 0.0 0.19 11.4 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_29 PF03141.11 gi|529078552|ref|YP_008377555.1| - 0.079 11.2 0.0 0.11 10.7 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase ATP_bind_3 PF01171.15 gi|529078554|ref|YP_008377557.1| - 1.2e-14 54.2 0.0 1.6e-14 53.7 0.0 1.3 1 0 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.14 gi|529078554|ref|YP_008377557.1| - 3.7e-07 30.1 0.0 5.2e-07 29.6 0.0 1.1 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.12 gi|529078554|ref|YP_008377557.1| - 0.00039 19.4 0.0 0.00067 18.6 0.0 1.4 1 0 0 1 1 1 1 NAD synthase Asn_synthase PF00733.16 gi|529078554|ref|YP_008377557.1| - 0.0014 18.1 0.2 0.0031 17.0 0.0 1.5 2 0 0 2 2 2 1 Asparagine synthase tRNA_Me_trans PF03054.11 gi|529078554|ref|YP_008377557.1| - 0.0059 15.1 0.0 0.009 14.6 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase DUF2392 PF10288.4 gi|529078554|ref|YP_008377557.1| - 0.0063 16.8 0.0 0.01 16.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2392) DZR PF12773.2 gi|529078554|ref|YP_008377557.1| - 0.074 12.8 2.4 0.53 10.1 0.7 2.3 2 0 0 2 2 2 0 Double zinc ribbon FtsZ_C PF12327.3 gi|529078555|ref|YP_008377558.1| - 2.4e-34 117.2 0.7 2.4e-34 117.2 0.5 2.7 2 1 0 2 2 2 1 FtsZ family, C-terminal domain Tubulin PF00091.20 gi|529078555|ref|YP_008377558.1| - 1.4e-32 113.2 3.0 6.5e-32 111.1 2.1 1.9 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain ThiF PF00899.16 gi|529078555|ref|YP_008377558.1| - 0.022 14.5 0.0 0.063 13.0 0.0 1.8 1 0 0 1 1 1 0 ThiF family RHH_1 PF01402.16 gi|529078556|ref|YP_008377559.1| - 3.1e-08 33.1 0.2 4.5e-08 32.6 0.2 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_2 PF03693.9 gi|529078556|ref|YP_008377559.1| - 0.0097 16.0 0.1 0.01 15.9 0.1 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0156) DUF3780 PF12635.2 gi|529078556|ref|YP_008377559.1| - 0.08 12.4 0.5 0.11 11.9 0.3 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3780) zf-ribbon_3 PF13248.1 gi|529078557|ref|YP_008377560.1| - 9.2e-13 46.9 9.6 1.3e-07 30.5 1.8 2.3 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|529078557|ref|YP_008377560.1| - 4.8e-12 45.4 30.0 3.7e-08 33.0 7.4 1.8 1 1 2 3 3 3 3 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|529078557|ref|YP_008377560.1| - 9.9e-09 34.4 11.0 9e-05 21.8 2.5 2.4 2 0 0 2 2 2 2 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|529078557|ref|YP_008377560.1| - 1.8e-05 24.1 8.0 0.022 14.2 0.0 3.5 3 0 0 3 3 3 2 NADH pyrophosphatase zinc ribbon domain Prok-RING_1 PF14446.1 gi|529078557|ref|YP_008377560.1| - 0.00011 21.8 9.0 0.0011 18.6 2.1 2.4 1 1 1 2 2 2 1 Prokaryotic RING finger family 1 UPF0547 PF10571.4 gi|529078557|ref|YP_008377560.1| - 0.00012 21.7 7.0 0.0088 15.7 1.7 2.3 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 Nudix_N_2 PF14803.1 gi|529078557|ref|YP_008377560.1| - 0.00033 20.2 9.8 0.97 9.1 1.4 3.7 3 1 0 3 3 3 2 Nudix N-terminal RHH_1 PF01402.16 gi|529078557|ref|YP_008377560.1| - 0.00036 20.2 2.5 0.026 14.4 0.0 3.2 4 0 0 4 4 3 1 Ribbon-helix-helix protein, copG family PolC_DP2 PF03833.8 gi|529078557|ref|YP_008377560.1| - 0.00053 17.8 2.4 0.00062 17.5 1.7 1.1 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 Cys_rich_KTR PF14205.1 gi|529078557|ref|YP_008377560.1| - 0.00057 19.2 2.4 0.14 11.6 0.3 2.4 2 0 0 2 2 2 2 Cysteine-rich KTR NOB1_Zn_bind PF08772.6 gi|529078557|ref|YP_008377560.1| - 0.0021 17.8 11.6 0.047 13.5 3.5 2.7 1 1 1 2 2 2 2 Nin one binding (NOB1) Zn-ribbon like OrfB_Zn_ribbon PF07282.6 gi|529078557|ref|YP_008377560.1| - 0.011 15.3 12.3 0.9 9.2 8.5 2.6 1 1 0 1 1 1 0 Putative transposase DNA-binding domain DUF2191 PF09957.4 gi|529078557|ref|YP_008377560.1| - 0.013 15.3 2.2 0.014 15.1 0.4 2.0 2 1 0 2 2 1 0 Uncharacterized protein conserved in bacteria (DUF2191) DNA_ligase_ZBD PF03119.11 gi|529078557|ref|YP_008377560.1| - 0.042 13.5 2.1 4.9 6.9 0.1 2.8 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.5 gi|529078557|ref|YP_008377560.1| - 0.09 12.7 12.0 0.91 9.5 3.0 3.5 2 2 1 3 3 3 0 Zinc ribbon domain zf-dskA_traR PF01258.12 gi|529078557|ref|YP_008377560.1| - 0.19 11.5 11.0 0.3 10.8 0.0 3.8 4 0 0 4 4 3 0 Prokaryotic dksA/traR C4-type zinc finger zinc-ribbons_6 PF07191.7 gi|529078557|ref|YP_008377560.1| - 0.32 10.8 9.5 0.13 12.0 3.3 2.2 1 1 1 2 2 2 0 zinc-ribbons zf-C3HC4_3 PF13920.1 gi|529078557|ref|YP_008377560.1| - 0.36 10.5 8.0 0.34 10.6 0.9 2.2 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Prok-RING_4 PF14447.1 gi|529078557|ref|YP_008377560.1| - 0.54 9.8 6.9 2.8 7.5 0.0 3.1 2 1 1 3 3 3 0 Prokaryotic RING finger family 4 Sgf11 PF08209.6 gi|529078557|ref|YP_008377560.1| - 0.6 9.4 8.7 4.8 6.5 0.5 3.2 2 1 1 3 3 3 0 Sgf11 (transcriptional regulation protein) DUF2321 PF10083.4 gi|529078557|ref|YP_008377560.1| - 0.67 9.4 5.3 0.19 11.1 1.4 1.7 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2321) Ribosomal_L32p PF01783.18 gi|529078557|ref|YP_008377560.1| - 1.1 9.5 4.8 1 9.5 1.4 2.2 1 1 1 2 2 2 0 Ribosomal L32p protein family zf-ISL3 PF14690.1 gi|529078557|ref|YP_008377560.1| - 1.3 9.1 10.6 2.5 8.2 0.5 3.4 2 1 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Auto_anti-p27 PF06677.7 gi|529078557|ref|YP_008377560.1| - 1.3 8.8 9.1 2.7 7.8 2.5 2.7 2 1 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) HypA PF01155.14 gi|529078557|ref|YP_008377560.1| - 1.6 8.4 10.7 55 3.4 7.4 2.3 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zinc_ribbon_5 PF13719.1 gi|529078557|ref|YP_008377560.1| - 2.1 7.9 6.5 28 4.3 0.2 3.4 3 0 0 3 3 3 0 zinc-ribbon domain DUF164 PF02591.10 gi|529078557|ref|YP_008377560.1| - 2.4 8.0 8.5 14 5.6 0.1 3.0 2 1 0 2 2 2 0 Putative zinc ribbon domain zinc_ribbon_4 PF13717.1 gi|529078557|ref|YP_008377560.1| - 2.4 7.9 6.4 29 4.4 0.2 3.4 3 0 0 3 3 3 0 zinc-ribbon domain Prim_Zn_Ribbon PF08273.7 gi|529078557|ref|YP_008377560.1| - 3.1 7.9 15.9 2.8 8.0 6.8 2.7 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase TF_Zn_Ribbon PF08271.7 gi|529078557|ref|YP_008377560.1| - 3.5 7.0 15.5 1.5 8.2 0.3 3.3 1 1 2 3 3 3 0 TFIIB zinc-binding Zn_Tnp_IS91 PF14319.1 gi|529078557|ref|YP_008377560.1| - 5.1 6.6 10.2 21 4.6 7.1 2.0 1 1 0 1 1 1 0 Transposase zinc-binding domain zf-C2H2 PF00096.21 gi|529078557|ref|YP_008377560.1| - 5.5 7.5 5.5 91 3.7 0.2 3.3 3 0 0 3 3 3 0 Zinc finger, C2H2 type PTE PF02126.13 gi|529078558|ref|YP_008377561.1| - 1.2e-56 191.9 0.0 1.4e-56 191.7 0.0 1.0 1 0 0 1 1 1 1 Phosphotriesterase family FdhE PF04216.7 gi|529078559|ref|YP_008377562.1| - 0.0019 18.0 0.6 0.0019 18.0 0.4 1.0 1 0 0 1 1 1 1 Protein involved in formate dehydrogenase formation HypA PF01155.14 gi|529078559|ref|YP_008377562.1| - 0.0022 17.6 0.5 0.0026 17.4 0.3 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|529078559|ref|YP_008377562.1| - 0.0036 17.2 2.1 0.15 12.0 1.4 2.1 1 1 0 1 1 1 1 Zinc ribbon domain DZR PF12773.2 gi|529078559|ref|YP_008377562.1| - 0.012 15.4 1.1 0.014 15.2 0.8 1.1 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|529078559|ref|YP_008377562.1| - 0.014 14.5 1.4 0.019 14.1 1.0 1.3 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_6 PF14599.1 gi|529078559|ref|YP_008377562.1| - 0.017 14.9 2.8 0.022 14.5 1.9 1.2 1 0 0 1 1 1 0 Zinc-ribbon TFIIS_C PF01096.13 gi|529078559|ref|YP_008377562.1| - 0.023 14.3 0.7 5 6.8 0.0 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zinc-ribbons_6 PF07191.7 gi|529078559|ref|YP_008377562.1| - 0.03 14.0 0.3 0.036 13.8 0.2 1.1 1 0 0 1 1 1 0 zinc-ribbons Ribosomal_L32p PF01783.18 gi|529078559|ref|YP_008377562.1| - 0.037 14.2 0.3 0.04 14.0 0.2 1.1 1 0 0 1 1 1 0 Ribosomal L32p protein family DNA_RNApol_7kD PF03604.8 gi|529078559|ref|YP_008377562.1| - 0.11 11.9 1.9 0.24 10.9 1.3 1.5 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit TF_Zn_Ribbon PF08271.7 gi|529078559|ref|YP_008377562.1| - 0.17 11.2 1.9 0.41 10.0 0.1 2.0 2 0 0 2 2 2 0 TFIIB zinc-binding NRDD PF13597.1 gi|529078559|ref|YP_008377562.1| - 0.18 9.8 0.6 0.22 9.5 0.4 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zf-ISL3 PF14690.1 gi|529078559|ref|YP_008377562.1| - 0.19 11.7 0.3 0.19 11.7 0.2 1.8 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-RING_3 PF14369.1 gi|529078559|ref|YP_008377562.1| - 0.98 9.4 4.6 17 5.4 3.3 2.1 1 1 1 2 2 2 0 zinc-finger zf-C2H2 PF00096.21 gi|529078559|ref|YP_008377562.1| - 1.2 9.6 5.0 2.7 8.4 0.1 2.4 1 1 1 2 2 2 0 Zinc finger, C2H2 type Aldo_ket_red PF00248.16 gi|529078560|ref|YP_008377563.1| - 9.1e-11 41.0 0.0 2e-10 40.0 0.0 1.5 1 1 1 2 2 2 1 Aldo/keto reductase family DUF4129 PF13559.1 gi|529078561|ref|YP_008377564.1| - 1.6e-13 50.4 2.1 1.6e-13 50.4 1.5 1.8 1 1 1 2 2 2 1 Domain of unknown function (DUF4129) DUF58 PF01882.13 gi|529078562|ref|YP_008377565.1| - 1.5e-18 66.7 1.3 5e-18 65.0 0.3 2.4 2 0 0 2 2 2 1 Protein of unknown function DUF58 DUF11 PF01345.13 gi|529078562|ref|YP_008377565.1| - 3.5e-10 39.7 1.9 1.6e-09 37.6 1.3 2.2 1 0 0 1 1 1 1 Domain of unknown function DUF11 NPCBM_assoc PF10633.4 gi|529078562|ref|YP_008377565.1| - 4.9e-05 23.3 0.2 0.00082 19.3 0.0 3.0 2 0 0 2 2 2 1 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|529078562|ref|YP_008377565.1| - 0.19 11.8 0.0 0.36 10.8 0.0 1.5 1 0 0 1 1 1 0 CARDB DUF3185 PF11381.3 gi|529078563|ref|YP_008377566.1| - 5.6 6.8 14.8 6.5 6.5 1.5 3.3 2 1 1 3 3 3 0 Protein of unknown function (DUF3185) HTH_11 PF08279.7 gi|529078564|ref|YP_008377567.1| - 4.8e-05 22.9 0.0 6.8e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|529078564|ref|YP_008377567.1| - 0.00011 21.9 0.0 0.00014 21.5 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|529078564|ref|YP_008377567.1| - 0.0021 17.8 0.0 0.0036 17.0 0.0 1.4 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_23 PF13384.1 gi|529078564|ref|YP_008377567.1| - 0.031 13.9 0.0 0.053 13.2 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_Mga PF08280.6 gi|529078564|ref|YP_008377567.1| - 0.039 13.7 0.0 0.048 13.4 0.0 1.2 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain SgrR_N PF12793.2 gi|529078564|ref|YP_008377567.1| - 0.04 13.9 0.0 0.12 12.3 0.0 1.7 1 1 1 2 2 2 0 Sugar transport-related sRNA regulator N-term HTH_17 PF12728.2 gi|529078564|ref|YP_008377567.1| - 0.054 13.7 0.2 0.35 11.1 0.0 2.2 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_CodY PF08222.6 gi|529078564|ref|YP_008377567.1| - 0.14 11.4 0.0 0.21 10.9 0.0 1.2 1 0 0 1 1 1 0 CodY helix-turn-helix domain DUF4129 PF13559.1 gi|529078565|ref|YP_008377568.1| - 3.4e-15 55.7 5.1 8e-15 54.5 3.5 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) DUF58 PF01882.13 gi|529078566|ref|YP_008377569.1| - 1.9e-18 66.3 1.1 5.3e-18 64.9 0.8 1.8 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF11 PF01345.13 gi|529078566|ref|YP_008377569.1| - 4e-07 29.9 0.8 6.1e-06 26.1 0.1 2.9 2 0 0 2 2 2 1 Domain of unknown function DUF11 NPCBM_assoc PF10633.4 gi|529078566|ref|YP_008377569.1| - 0.00041 20.3 0.2 0.02 14.9 0.0 2.9 2 0 0 2 2 2 1 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|529078566|ref|YP_008377569.1| - 0.021 14.8 0.0 0.74 9.9 0.0 2.5 1 1 1 2 2 2 0 CARDB DUF3222 PF11519.3 gi|529078566|ref|YP_008377569.1| - 0.15 12.0 0.6 0.47 10.4 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3222) AAA_3 PF07726.6 gi|529078568|ref|YP_008377571.1| - 3.6e-66 220.7 0.0 5.7e-66 220.0 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|529078568|ref|YP_008377571.1| - 6.1e-16 58.4 0.0 1.6e-15 57.0 0.0 1.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|529078568|ref|YP_008377571.1| - 4.2e-07 30.2 0.0 1.1e-06 28.8 0.0 1.8 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.18 gi|529078568|ref|YP_008377571.1| - 8e-07 28.1 0.1 0.00062 18.6 0.0 2.3 2 1 0 2 2 2 2 MCM2/3/5 family Sigma54_activat PF00158.21 gi|529078568|ref|YP_008377571.1| - 1.7e-05 24.3 0.0 0.0011 18.4 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|529078568|ref|YP_008377571.1| - 0.00032 19.9 0.1 0.13 11.3 0.0 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_2 PF07724.9 gi|529078568|ref|YP_008377571.1| - 0.0085 16.0 0.0 0.019 14.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|529078568|ref|YP_008377571.1| - 0.011 14.7 0.0 0.13 11.2 0.0 2.2 1 1 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus Mg_chelatase_2 PF13335.1 gi|529078568|ref|YP_008377571.1| - 0.014 15.7 0.1 0.042 14.2 0.1 1.8 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_18 PF13238.1 gi|529078568|ref|YP_008377571.1| - 0.039 14.2 0.0 0.076 13.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|529078568|ref|YP_008377571.1| - 0.074 13.8 0.0 0.2 12.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|529078568|ref|YP_008377571.1| - 0.1 12.7 0.0 0.32 11.1 0.0 2.0 1 1 1 2 2 2 0 AAA domain AAA_11 PF13086.1 gi|529078568|ref|YP_008377571.1| - 0.15 11.6 0.0 3.3 7.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain OrfB_Zn_ribbon PF07282.6 gi|529078569|ref|YP_008377572.1| - 6.4e-23 80.1 0.5 1.2e-22 79.3 0.3 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|529078569|ref|YP_008377572.1| - 2.8e-12 46.5 0.0 3.9e-12 46.0 0.0 1.2 1 0 0 1 1 1 1 Probable transposase Tnp_zf-ribbon_2 PF13842.1 gi|529078569|ref|YP_008377572.1| - 0.028 14.7 1.4 0.028 14.7 1.0 1.9 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon DUF2070 PF09843.4 gi|529078570|ref|YP_008377573.1| - 1.2e-54 184.4 1.4 1.7e-54 184.0 0.2 1.7 2 0 0 2 2 2 1 Predicted membrane protein (DUF2070) Glyco_hydro_43 PF04616.9 gi|529078571|ref|YP_008377574.1| - 1.6e-54 184.9 6.9 2.4e-54 184.3 4.8 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 43 EF-hand_7 PF13499.1 gi|529078571|ref|YP_008377574.1| - 0.018 15.1 2.3 0.92 9.6 0.9 2.5 2 0 0 2 2 2 0 EF-hand domain pair Glyco_hydro_32N PF00251.15 gi|529078571|ref|YP_008377574.1| - 0.019 14.3 0.5 0.15 11.3 0.1 2.1 1 1 1 2 2 2 0 Glycosyl hydrolases family 32 N-terminal domain EF-hand_6 PF13405.1 gi|529078571|ref|YP_008377574.1| - 2.2 8.3 4.2 9 6.4 0.1 3.1 2 0 0 2 2 2 0 EF-hand domain EF-hand_1 PF00036.27 gi|529078571|ref|YP_008377574.1| - 8.3 5.9 8.2 4.4 6.8 0.0 3.1 3 0 0 3 3 3 0 EF hand GATase PF00117.23 gi|529078572|ref|YP_008377575.1| - 3.1e-34 118.1 0.0 3.5e-34 117.9 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|529078572|ref|YP_008377575.1| - 1.5e-13 50.6 1.4 3.6e-12 46.1 0.1 2.8 1 1 1 2 2 2 1 Peptidase C26 GATase_3 PF07685.9 gi|529078572|ref|YP_008377575.1| - 0.039 13.5 0.1 0.082 12.4 0.0 1.5 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain HATPase_c PF02518.21 gi|529078573|ref|YP_008377576.1| - 0.0024 17.5 0.2 0.014 15.1 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|529078573|ref|YP_008377576.1| - 0.032 14.2 0.1 0.079 12.9 0.1 1.6 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain Nitrate_red_gam PF02665.9 gi|529078573|ref|YP_008377576.1| - 0.08 12.2 1.2 0.15 11.4 0.8 1.4 1 0 0 1 1 1 0 Nitrate reductase gamma subunit OrfB_Zn_ribbon PF07282.6 gi|529078574|ref|YP_008377577.1| - 1.3e-19 69.6 0.5 2.2e-19 68.8 0.3 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|529078574|ref|YP_008377577.1| - 0.00022 20.6 0.5 0.00046 19.6 0.4 1.6 1 1 0 1 1 1 1 Probable transposase Zn_Tnp_IS1595 PF12760.2 gi|529078574|ref|YP_008377577.1| - 0.0023 17.6 6.2 0.004 16.9 4.3 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain XisH PF08814.5 gi|529078574|ref|YP_008377577.1| - 0.049 13.6 0.2 0.09 12.7 0.2 1.5 1 0 0 1 1 1 0 XisH protein Zn_Tnp_IS1 PF03811.8 gi|529078574|ref|YP_008377577.1| - 8.2 6.0 9.7 18 4.9 6.7 1.5 1 0 0 1 1 1 0 InsA N-terminal domain ParG PF09274.5 gi|529078575|ref|YP_008377578.1| - 1.3e-05 24.9 0.1 1.4e-05 24.8 0.1 1.0 1 0 0 1 1 1 1 ParG RHH_1 PF01402.16 gi|529078575|ref|YP_008377578.1| - 4.2e-05 23.2 0.0 4.6e-05 23.1 0.0 1.1 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family Y1_Tnp PF01797.11 gi|529078576|ref|YP_008377579.1| - 2.2e-09 37.1 0.1 2.4e-09 37.1 0.1 1.0 1 0 0 1 1 1 1 Transposase IS200 like DUF192 PF02643.10 gi|529078578|ref|YP_008377581.1| - 9.9e-16 57.3 0.0 1.1e-15 57.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 MoeA_C PF03454.10 gi|529078578|ref|YP_008377581.1| - 0.013 15.4 0.1 0.027 14.4 0.0 1.5 1 0 0 1 1 1 0 MoeA C-terminal region (domain IV) HMGL-like PF00682.14 gi|529078579|ref|YP_008377582.1| - 4.4e-61 206.5 1.5 4.4e-61 206.5 1.1 1.7 2 0 0 2 2 2 1 HMGL-like LeuA_dimer PF08502.5 gi|529078579|ref|YP_008377582.1| - 1.9e-29 102.1 2.0 3.3e-29 101.3 1.4 1.4 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain TraC PF07820.7 gi|529078579|ref|YP_008377582.1| - 0.24 11.6 2.0 1.5 9.0 0.2 2.5 1 1 1 2 2 2 0 TraC-like protein Multi_Drug_Res PF00893.14 gi|529078580|ref|YP_008377583.1| - 2.3e-28 98.4 4.9 3.4e-28 97.9 3.4 1.2 1 0 0 1 1 1 1 Small Multidrug Resistance protein EamA PF00892.15 gi|529078580|ref|YP_008377583.1| - 0.032 14.2 11.5 0.061 13.3 8.0 1.5 1 1 0 1 1 1 0 EamA-like transporter family EmrE PF13536.1 gi|529078580|ref|YP_008377583.1| - 0.25 11.5 13.0 1.6 8.9 9.0 1.9 1 1 0 1 1 1 0 Multidrug resistance efflux transporter Bax1-I PF01027.15 gi|529078580|ref|YP_008377583.1| - 0.51 9.8 8.5 0.62 9.6 5.9 1.1 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 CD20 PF04103.10 gi|529078580|ref|YP_008377583.1| - 0.67 9.8 4.2 0.93 9.4 2.9 1.2 1 0 0 1 1 1 0 CD20-like family DUF4328 PF14219.1 gi|529078580|ref|YP_008377583.1| - 9.9 5.4 7.8 65 2.7 5.4 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4328) HAD_2 PF13419.1 gi|529078581|ref|YP_008377584.1| - 1.1e-15 58.3 0.7 1.3e-15 58.0 0.5 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|529078581|ref|YP_008377584.1| - 2.4e-11 43.1 0.1 4.3e-11 42.3 0.1 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|529078581|ref|YP_008377584.1| - 3.9e-06 27.4 0.1 0.002 18.5 0.0 2.2 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|529078581|ref|YP_008377584.1| - 0.018 15.2 0.1 0.043 13.9 0.1 1.7 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase LMWPc PF01451.16 gi|529078583|ref|YP_008377586.1| - 8.8e-20 71.4 0.1 1e-19 71.2 0.1 1.1 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase DUF3525 PF12039.3 gi|529078583|ref|YP_008377586.1| - 0.075 11.5 0.2 0.079 11.4 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3525) HTH_5 PF01022.15 gi|529078584|ref|YP_008377587.1| - 3.8e-15 55.2 0.1 5.8e-15 54.6 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|529078584|ref|YP_008377587.1| - 5.4e-12 45.3 0.0 7e-12 44.9 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|529078584|ref|YP_008377587.1| - 0.0026 18.0 0.0 0.005 17.1 0.0 1.6 2 1 0 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|529078584|ref|YP_008377587.1| - 0.0047 16.5 0.0 0.0082 15.8 0.0 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|529078584|ref|YP_008377587.1| - 0.015 15.1 0.0 0.036 13.8 0.0 1.7 1 1 1 2 2 2 0 Winged helix-turn-helix HTH_34 PF13601.1 gi|529078584|ref|YP_008377587.1| - 0.032 14.2 0.0 0.047 13.7 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF2513 PF10711.4 gi|529078584|ref|YP_008377587.1| - 0.054 13.5 0.0 0.067 13.2 0.0 1.5 1 1 0 1 1 1 0 Hypothetical protein (DUF2513) B-block_TFIIIC PF04182.7 gi|529078584|ref|YP_008377587.1| - 0.074 12.9 0.1 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC MarR_2 PF12802.2 gi|529078584|ref|YP_008377587.1| - 0.14 11.8 0.0 0.21 11.2 0.0 1.4 1 1 0 1 1 1 0 MarR family Thioredoxin_3 PF13192.1 gi|529078585|ref|YP_008377588.1| - 1.3e-22 79.3 0.8 1.4e-22 79.2 0.5 1.0 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.19 gi|529078585|ref|YP_008377588.1| - 0.0029 17.5 0.1 0.0041 17.0 0.1 1.3 1 0 0 1 1 1 1 Glutaredoxin DUF2703 PF10865.3 gi|529078585|ref|YP_008377588.1| - 0.0034 17.3 0.2 0.0043 16.9 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF2703) Thioredoxin_4 PF13462.1 gi|529078585|ref|YP_008377588.1| - 0.018 15.0 0.1 3 7.8 0.0 2.0 1 1 1 2 2 2 0 Thioredoxin HypD PF01924.11 gi|529078585|ref|YP_008377588.1| - 0.045 12.5 0.1 0.045 12.5 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase formation hypA family DUF59 PF01883.14 gi|529078585|ref|YP_008377588.1| - 0.089 12.7 0.1 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function DUF59 DUF318 PF03773.8 gi|529078586|ref|YP_008377589.1| - 2.6e-60 203.9 20.2 1.3e-58 198.4 14.0 2.2 1 1 0 1 1 1 1 Predicted permease DNase-RNase PF02577.9 gi|529078587|ref|YP_008377590.1| - 6.7e-37 125.7 0.0 8.8e-37 125.3 0.0 1.1 1 0 0 1 1 1 1 Bifunctional nuclease Nitro_FeMo-Co PF02579.12 gi|529078588|ref|YP_008377591.1| - 0.0017 18.3 0.0 0.0019 18.2 0.0 1.0 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Na_H_Exchanger PF00999.16 gi|529078589|ref|YP_008377592.1| - 1.1e-36 126.1 38.4 1.6e-36 125.6 26.6 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.13 gi|529078589|ref|YP_008377592.1| - 4.7e-32 110.4 0.4 1.2e-31 109.0 0.3 1.7 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|529078589|ref|YP_008377592.1| - 3.4e-09 36.1 0.0 1.4e-08 34.2 0.0 2.1 1 0 0 1 1 1 1 TrkA-C domain NAD_binding_7 PF13241.1 gi|529078589|ref|YP_008377592.1| - 6.8e-07 29.4 0.8 1.4e-06 28.5 0.2 1.8 2 0 0 2 2 2 1 Putative NAD(P)-binding F420_oxidored PF03807.12 gi|529078589|ref|YP_008377592.1| - 4.4e-05 23.8 0.1 0.00015 22.0 0.1 2.0 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.1 gi|529078589|ref|YP_008377592.1| - 5e-05 23.3 1.2 0.00027 20.9 0.3 2.4 2 0 0 2 2 2 1 NADH(P)-binding ApbA PF02558.11 gi|529078589|ref|YP_008377592.1| - 0.00026 20.4 0.0 0.00053 19.4 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Pyr_redox PF00070.22 gi|529078589|ref|YP_008377592.1| - 0.00033 21.0 0.1 0.00093 19.5 0.1 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Saccharop_dh PF03435.13 gi|529078589|ref|YP_008377592.1| - 0.0027 16.7 0.3 0.016 14.1 0.1 2.1 2 0 0 2 2 2 1 Saccharopine dehydrogenase 2-Hacid_dh_C PF02826.14 gi|529078589|ref|YP_008377592.1| - 0.0038 16.3 0.0 0.0077 15.4 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FAD_binding_3 PF01494.14 gi|529078589|ref|YP_008377592.1| - 0.0058 15.7 0.1 0.0088 15.1 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain NAD_binding_2 PF03446.10 gi|529078589|ref|YP_008377592.1| - 0.011 15.6 0.0 0.02 14.7 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.15 gi|529078589|ref|YP_008377592.1| - 0.027 14.5 0.0 0.05 13.6 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.13 gi|529078589|ref|YP_008377592.1| - 0.033 13.8 0.6 0.066 12.8 0.1 1.9 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|529078589|ref|YP_008377592.1| - 0.033 14.6 0.0 0.069 13.6 0.0 1.6 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Pyr_redox_2 PF07992.9 gi|529078589|ref|YP_008377592.1| - 0.081 12.7 0.0 0.19 11.5 0.0 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Spermine_synth PF01564.12 gi|529078589|ref|YP_008377592.1| - 0.16 10.8 0.1 0.25 10.2 0.0 1.2 1 0 0 1 1 1 0 Spermine/spermidine synthase Phage_integrase PF00589.17 gi|529078592|ref|YP_008377595.1| - 7.9e-14 51.7 0.0 1.3e-13 50.9 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family DZR PF12773.2 gi|529078592|ref|YP_008377595.1| - 0.0011 18.7 0.5 0.0019 17.9 0.4 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|529078592|ref|YP_008377595.1| - 0.031 13.4 1.9 0.055 12.6 1.2 1.6 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|529078592|ref|YP_008377595.1| - 0.4 10.2 2.2 2.6 7.6 1.6 2.1 1 1 2 3 3 3 0 zinc-ribbon domain DUF2863 PF11062.3 gi|529078593|ref|YP_008377596.1| - 0.079 11.0 0.1 0.089 10.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2863) DnaJ PF00226.26 gi|529078594|ref|YP_008377597.1| - 2.2e-06 27.3 0.0 4.4e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 DnaJ domain TF_Zn_Ribbon PF08271.7 gi|529078595|ref|YP_008377598.1| - 0.39 10.0 0.2 0.39 10.0 0.1 2.4 3 0 0 3 3 3 0 TFIIB zinc-binding RPA_interact_M PF14767.1 gi|529078596|ref|YP_008377599.1| - 0.034 14.8 0.3 0.039 14.6 0.2 1.1 1 0 0 1 1 1 0 Replication protein A interacting middle WEMBL PF05701.6 gi|529078596|ref|YP_008377599.1| - 0.051 12.0 0.3 0.053 11.9 0.2 1.0 1 0 0 1 1 1 0 Weak chloroplast movement under blue light FlaC_arch PF05377.6 gi|529078596|ref|YP_008377599.1| - 0.091 12.6 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) XhlA PF10779.4 gi|529078596|ref|YP_008377599.1| - 0.12 12.3 0.0 0.16 11.9 0.0 1.2 1 0 0 1 1 1 0 Haemolysin XhlA DUF1192 PF06698.6 gi|529078596|ref|YP_008377599.1| - 0.94 9.3 5.7 2.9 7.7 0.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) DZR PF12773.2 gi|529078597|ref|YP_008377600.1| - 0.037 13.8 0.3 0.066 13.0 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|529078597|ref|YP_008377600.1| - 0.11 11.6 2.0 0.18 11.0 1.4 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Na_Pi_cotrans PF02690.10 gi|529078599|ref|YP_008377602.1| - 1.2 8.8 7.5 0.19 11.4 0.7 2.3 2 1 1 3 3 3 0 Na+/Pi-cotransporter FUR PF01475.14 gi|529078600|ref|YP_008377603.1| - 0.062 13.2 0.0 0.064 13.1 0.0 1.1 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_45 PF14947.1 gi|529078600|ref|YP_008377603.1| - 0.08 12.7 0.0 0.25 11.1 0.0 1.7 1 1 0 1 1 1 0 Winged helix-turn-helix Dehyd-heme_bind PF09098.5 gi|529078605|ref|YP_008377608.1| - 0.011 15.1 0.0 0.27 10.6 0.0 2.3 2 0 0 2 2 2 0 Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding DUF3509 PF12021.3 gi|529078605|ref|YP_008377608.1| - 0.023 14.4 0.0 0.12 12.1 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3509) DUF2757 PF10955.3 gi|529078605|ref|YP_008377608.1| - 0.061 13.5 0.1 0.16 12.1 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2757) FpoO PF10621.4 gi|529078605|ref|YP_008377608.1| - 0.083 12.9 0.3 0.18 11.9 0.1 1.7 2 0 0 2 2 2 0 F420H2 dehydrogenase subunit FpoO TPR_12 PF13424.1 gi|529078606|ref|YP_008377609.1| - 5.6e-63 208.8 37.4 4.2e-18 65.0 2.0 6.0 4 2 2 6 6 5 5 Tetratricopeptide repeat TPR_1 PF00515.23 gi|529078606|ref|YP_008377609.1| - 2.9e-40 134.2 15.9 7e-07 28.6 0.1 8.2 8 0 0 8 8 8 7 Tetratricopeptide repeat TPR_10 PF13374.1 gi|529078606|ref|YP_008377609.1| - 1.1e-33 114.2 35.0 2.1e-06 27.4 0.1 9.1 9 0 0 9 9 8 7 Tetratricopeptide repeat TPR_2 PF07719.12 gi|529078606|ref|YP_008377609.1| - 5.4e-31 103.9 31.6 5.5e-06 25.8 0.1 9.2 9 0 0 9 9 8 6 Tetratricopeptide repeat TPR_7 PF13176.1 gi|529078606|ref|YP_008377609.1| - 5.8e-31 103.8 26.2 1.1e-07 31.1 0.1 8.7 9 0 0 9 9 7 6 Tetratricopeptide repeat TPR_11 PF13414.1 gi|529078606|ref|YP_008377609.1| - 5e-30 102.9 16.4 1e-08 34.7 0.5 5.8 5 0 0 5 5 5 4 TPR repeat TPR_8 PF13181.1 gi|529078606|ref|YP_008377609.1| - 1.1e-22 77.9 19.3 6.2e-05 22.4 0.1 7.9 8 0 0 8 8 7 6 Tetratricopeptide repeat TPR_16 PF13432.1 gi|529078606|ref|YP_008377609.1| - 4.3e-09 36.7 37.5 0.0021 18.6 1.1 6.3 7 0 0 7 7 4 4 Tetratricopeptide repeat TPR_17 PF13431.1 gi|529078606|ref|YP_008377609.1| - 3.7e-06 26.6 9.9 1.9 8.8 0.1 7.7 7 1 0 7 7 7 1 Tetratricopeptide repeat TPR_4 PF07721.9 gi|529078606|ref|YP_008377609.1| - 1.2e-05 25.2 5.4 12 6.6 0.1 7.8 8 0 0 8 8 6 0 Tetratricopeptide repeat TPR_14 PF13428.1 gi|529078606|ref|YP_008377609.1| - 4.6e-05 23.6 27.4 4 8.3 0.1 8.9 8 1 1 9 9 7 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|529078606|ref|YP_008377609.1| - 8.4e-05 22.3 16.2 0.22 11.4 0.1 6.7 7 0 0 7 7 7 2 Fis1 C-terminal tetratricopeptide repeat TPR_3 PF07720.7 gi|529078606|ref|YP_008377609.1| - 9.9e-05 22.0 11.0 0.37 10.6 0.0 5.0 5 0 0 5 5 4 2 Tetratricopeptide repeat ABC_tran PF00005.22 gi|529078606|ref|YP_008377609.1| - 0.0013 19.0 0.0 0.013 15.7 0.0 2.7 3 0 0 3 3 3 1 ABC transporter DUF3366 PF11846.3 gi|529078606|ref|YP_008377609.1| - 0.0019 18.1 0.2 3.4 7.5 0.0 3.5 2 1 1 3 3 3 1 Domain of unknown function (DUF3366) Apc3 PF12895.2 gi|529078606|ref|YP_008377609.1| - 0.0037 17.3 5.7 3.4 7.8 0.1 4.4 2 2 3 5 5 5 1 Anaphase-promoting complex, cyclosome, subunit 3 AAA_25 PF13481.1 gi|529078606|ref|YP_008377609.1| - 0.0056 16.1 0.0 0.017 14.5 0.0 1.9 1 0 0 1 1 1 1 AAA domain SNAP PF14938.1 gi|529078606|ref|YP_008377609.1| - 0.0064 15.6 0.7 0.54 9.3 0.1 2.5 2 0 0 2 2 2 1 Soluble NSF attachment protein, SNAP AAA_17 PF13207.1 gi|529078606|ref|YP_008377609.1| - 0.012 16.4 0.0 0.012 16.4 0.0 2.9 3 1 0 3 3 1 0 AAA domain NACHT PF05729.7 gi|529078606|ref|YP_008377609.1| - 0.013 15.1 0.0 0.03 13.9 0.0 1.5 1 0 0 1 1 1 0 NACHT domain TPR_6 PF13174.1 gi|529078606|ref|YP_008377609.1| - 0.019 15.3 21.1 1.6 9.3 0.1 8.2 8 0 0 8 8 8 0 Tetratricopeptide repeat AAA_19 PF13245.1 gi|529078606|ref|YP_008377609.1| - 0.022 14.4 0.0 0.083 12.6 0.0 2.1 1 0 0 1 1 1 0 Part of AAA domain Tcf25 PF04910.9 gi|529078606|ref|YP_008377609.1| - 0.04 12.8 0.3 0.6 8.9 0.0 2.7 3 0 0 3 3 3 0 Transcriptional repressor TCF25 AAA_22 PF13401.1 gi|529078606|ref|YP_008377609.1| - 0.041 14.0 0.0 0.23 11.6 0.0 2.4 2 0 0 2 2 1 0 AAA domain AAA_16 PF13191.1 gi|529078606|ref|YP_008377609.1| - 0.043 13.7 0.1 0.043 13.7 0.1 3.3 4 2 0 4 4 4 0 AAA ATPase domain AAA_29 PF13555.1 gi|529078606|ref|YP_008377609.1| - 0.056 12.9 0.0 0.13 11.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain TPR_19 PF14559.1 gi|529078606|ref|YP_008377609.1| - 0.093 13.0 24.5 8.6 6.7 1.5 5.5 3 2 2 5 5 5 0 Tetratricopeptide repeat MobB PF03205.9 gi|529078606|ref|YP_008377609.1| - 0.095 12.4 0.0 0.36 10.5 0.0 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B ATP_bind_1 PF03029.12 gi|529078606|ref|YP_008377609.1| - 0.15 11.5 0.1 0.45 10.0 0.0 1.8 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein RNA_helicase PF00910.17 gi|529078606|ref|YP_008377609.1| - 0.18 12.0 0.0 0.69 10.1 0.0 1.9 2 0 0 2 2 1 0 RNA helicase AAA_10 PF12846.2 gi|529078606|ref|YP_008377609.1| - 0.34 10.2 3.6 1.9 7.8 0.0 3.3 4 0 0 4 4 4 0 AAA-like domain SPOB_a PF14689.1 gi|529078606|ref|YP_008377609.1| - 0.58 9.7 7.5 58 3.3 0.1 5.2 6 0 0 6 6 5 0 Sensor_kinase_SpoOB-type, alpha-helical domain Apc5 PF12862.2 gi|529078606|ref|YP_008377609.1| - 1.5 8.7 13.6 12 5.7 0.0 5.5 6 2 1 7 7 4 0 Anaphase-promoting complex subunit 5 Pentapeptide_4 PF13599.1 gi|529078608|ref|YP_008377611.1| - 9.8e-31 105.4 1.0 4.8e-12 45.5 0.2 3.6 1 1 2 3 3 3 3 Pentapeptide repeats (9 copies) Pentapeptide PF00805.17 gi|529078608|ref|YP_008377611.1| - 4.8e-25 86.3 24.9 3e-06 26.3 2.3 6.8 3 2 3 7 7 7 6 Pentapeptide repeats (8 copies) Pentapeptide_3 PF13576.1 gi|529078608|ref|YP_008377611.1| - 2.3e-19 68.9 4.1 0.00022 21.0 0.2 6.2 1 1 4 5 5 5 5 Pentapeptide repeats (9 copies) Ion_trans_2 PF07885.11 gi|529078608|ref|YP_008377611.1| - 8.1e-13 47.8 2.2 1.5e-12 47.0 1.5 1.5 1 0 0 1 1 1 1 Ion channel UPF0236 PF06782.6 gi|529078609|ref|YP_008377612.1| - 4.1e-07 28.7 0.1 3.2e-05 22.5 0.0 2.2 2 0 0 2 2 2 2 Uncharacterised protein family (UPF0236) Transposase_mut PF00872.13 gi|529078609|ref|YP_008377612.1| - 9.9e-05 21.0 1.5 0.024 13.2 0.1 2.5 2 1 0 2 2 2 2 Transposase, Mutator family DUF4118 PF13493.1 gi|529078610|ref|YP_008377613.1| - 0.086 13.0 1.8 0.092 12.9 1.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4118) DUF373 PF04123.8 gi|529078610|ref|YP_008377613.1| - 0.14 11.1 0.4 0.15 11.0 0.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF373) SPW PF03779.9 gi|529078610|ref|YP_008377613.1| - 0.83 9.0 3.5 7.1 6.0 0.2 2.2 2 0 0 2 2 2 0 SPW repeat TadE PF07811.7 gi|529078610|ref|YP_008377613.1| - 2.2 8.2 7.1 0.6 10.0 1.7 2.0 2 0 0 2 2 2 0 TadE-like protein BOF PF04076.8 gi|529078611|ref|YP_008377614.1| - 0.0094 15.7 0.1 0.014 15.2 0.1 1.3 1 0 0 1 1 1 1 Bacterial OB fold (BOF) protein Glyco_hydro_2 PF00703.16 gi|529078611|ref|YP_008377614.1| - 0.021 15.2 0.1 0.027 14.9 0.1 1.2 1 0 0 1 1 1 0 Glycosyl hydrolases family 2 TAT_signal PF10518.4 gi|529078611|ref|YP_008377614.1| - 0.052 13.5 0.4 0.052 13.5 0.3 2.1 3 0 0 3 3 3 0 TAT (twin-arginine translocation) pathway signal sequence Big_3_4 PF13754.1 gi|529078611|ref|YP_008377614.1| - 0.075 13.3 1.4 1.9 8.8 0.8 2.3 1 1 1 2 2 2 0 Bacterial Ig-like domain (group 3) Calx-beta PF03160.9 gi|529078611|ref|YP_008377614.1| - 0.12 12.3 0.9 0.25 11.3 0.6 1.5 1 1 0 1 1 1 0 Calx-beta domain DUF553 PF04473.7 gi|529078612|ref|YP_008377615.1| - 0.029 13.6 0.0 0.044 13.0 0.0 1.2 1 0 0 1 1 1 0 Transglutaminase-like domain CARDB PF07705.6 gi|529078612|ref|YP_008377615.1| - 0.059 13.4 0.0 0.51 10.4 0.0 2.4 2 1 0 2 2 2 0 CARDB Glyco_hydro_2 PF00703.16 gi|529078612|ref|YP_008377615.1| - 0.14 12.6 0.5 0.53 10.7 0.2 2.1 2 1 0 2 2 2 0 Glycosyl hydrolases family 2 zf-TFIIB PF13453.1 gi|529078615|ref|YP_008377618.1| - 0.00068 18.7 0.7 0.012 14.8 0.0 2.1 2 0 0 2 2 2 1 Transcription factor zinc-finger DUF1451 PF07295.6 gi|529078615|ref|YP_008377618.1| - 0.0017 18.1 0.6 0.002 17.9 0.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1451) PLDc_N PF13396.1 gi|529078615|ref|YP_008377618.1| - 0.036 13.7 9.6 0.066 12.8 6.6 1.5 1 1 0 1 1 1 0 Phospholipase_D-nuclease N-terminal Zn-ribbon_8 PF09723.5 gi|529078615|ref|YP_008377618.1| - 0.038 13.9 2.5 0.07 13.0 1.8 1.5 1 1 0 1 1 1 0 Zinc ribbon domain DZR PF12773.2 gi|529078615|ref|YP_008377618.1| - 0.071 12.9 0.8 0.1 12.4 0.5 1.3 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.14 gi|529078615|ref|YP_008377618.1| - 0.15 11.7 1.0 0.19 11.3 0.7 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family OrfB_Zn_ribbon PF07282.6 gi|529078615|ref|YP_008377618.1| - 0.17 11.5 2.8 0.34 10.6 1.9 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain GATA PF00320.22 gi|529078615|ref|YP_008377618.1| - 0.33 10.3 3.3 0.29 10.5 0.2 2.1 1 1 1 2 2 2 0 GATA zinc finger zf-RING_3 PF14369.1 gi|529078615|ref|YP_008377618.1| - 0.34 10.9 1.8 0.71 9.9 1.3 1.6 1 1 0 1 1 1 0 zinc-finger TF_Zn_Ribbon PF08271.7 gi|529078615|ref|YP_008377618.1| - 0.57 9.5 3.3 0.97 8.8 2.3 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding Prok-RING_2 PF14445.1 gi|529078615|ref|YP_008377618.1| - 0.68 9.9 2.6 16 5.4 1.8 2.2 1 1 0 1 1 1 0 Prokaryotic RING finger family 2 ADK_lid PF05191.9 gi|529078615|ref|YP_008377618.1| - 1.9 8.2 5.2 6.7 6.4 3.6 1.8 1 1 0 1 1 1 0 Adenylate kinase, active site lid Nudix_N_2 PF14803.1 gi|529078615|ref|YP_008377618.1| - 1.9 8.2 5.0 15 5.3 0.3 2.2 2 0 0 2 2 2 0 Nudix N-terminal DUF4282 PF14110.1 gi|529078615|ref|YP_008377618.1| - 4.1 7.6 8.9 5.5 7.2 6.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) HTH_20 PF12840.2 gi|529078617|ref|YP_008377620.1| - 0.0051 16.6 0.1 0.014 15.1 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|529078617|ref|YP_008377620.1| - 0.0062 15.9 0.1 0.0085 15.4 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|529078617|ref|YP_008377620.1| - 0.12 12.0 0.1 0.19 11.4 0.1 1.3 1 0 0 1 1 1 0 MarR family HNH PF01844.18 gi|529078619|ref|YP_008377622.1| - 1.3e-10 40.9 5.3 1.8e-10 40.5 3.7 1.2 1 0 0 1 1 1 1 HNH endonuclease HNH_2 PF13391.1 gi|529078619|ref|YP_008377622.1| - 9.4e-05 22.1 0.8 0.00015 21.4 0.5 1.3 1 0 0 1 1 1 1 HNH endonuclease Lar_restr_allev PF14354.1 gi|529078619|ref|YP_008377622.1| - 0.00068 19.8 0.2 0.0011 19.2 0.1 1.5 1 1 0 1 1 1 1 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.5 gi|529078619|ref|YP_008377622.1| - 0.011 15.7 0.5 0.44 10.5 0.0 2.4 2 0 0 2 2 2 0 Zinc ribbon domain zf-IS66 PF13005.2 gi|529078619|ref|YP_008377622.1| - 0.015 15.2 0.1 2.9 7.9 0.0 2.6 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-AD PF07776.10 gi|529078619|ref|YP_008377622.1| - 0.032 14.2 0.6 0.086 12.8 0.4 1.7 1 1 0 1 1 1 0 Zinc-finger associated domain (zf-AD) HNH_5 PF14279.1 gi|529078619|ref|YP_008377622.1| - 0.034 14.1 0.3 0.041 13.8 0.2 1.2 1 0 0 1 1 1 0 HNH endonuclease DUF968 PF06147.6 gi|529078619|ref|YP_008377622.1| - 0.04 13.8 1.1 0.051 13.4 0.5 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF968) DZR PF12773.2 gi|529078619|ref|YP_008377622.1| - 0.054 13.3 1.3 0.11 12.3 0.9 1.6 1 1 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|529078619|ref|YP_008377622.1| - 0.066 12.4 1.4 0.93 8.7 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain HNH_4 PF13395.1 gi|529078619|ref|YP_008377622.1| - 0.074 12.6 0.1 0.17 11.5 0.0 1.6 1 1 0 1 1 1 0 HNH endonuclease UPF0547 PF10571.4 gi|529078619|ref|YP_008377622.1| - 0.11 12.2 1.4 4.4 7.0 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 OrfB_Zn_ribbon PF07282.6 gi|529078619|ref|YP_008377622.1| - 0.21 11.2 3.9 1.5 8.5 2.8 2.1 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.1 gi|529078619|ref|YP_008377622.1| - 0.28 10.7 3.5 3 7.4 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|529078619|ref|YP_008377622.1| - 0.35 10.5 2.7 2.2 8.0 0.2 2.2 2 0 0 2 2 2 0 Nudix N-terminal TF_Zn_Ribbon PF08271.7 gi|529078619|ref|YP_008377622.1| - 0.75 9.1 2.7 5.5 6.3 0.1 2.8 3 0 0 3 3 3 0 TFIIB zinc-binding Resolvase PF00239.16 gi|529078620|ref|YP_008377623.1| - 1.3e-33 115.8 2.4 1.7e-33 115.4 1.7 1.2 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_23 PF13384.1 gi|529078620|ref|YP_008377623.1| - 9.1e-05 21.9 0.1 0.00024 20.6 0.1 1.8 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|529078620|ref|YP_008377623.1| - 0.00074 19.4 0.0 0.0015 18.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|529078620|ref|YP_008377623.1| - 0.011 15.1 0.0 0.026 13.9 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_38 PF13936.1 gi|529078620|ref|YP_008377623.1| - 0.012 15.1 0.0 0.032 13.7 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_17 PF12728.2 gi|529078620|ref|YP_008377623.1| - 0.018 15.2 0.0 0.052 13.8 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|529078620|ref|YP_008377623.1| - 0.018 14.3 0.3 0.043 13.1 0.0 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 Phage_NinH PF06322.6 gi|529078620|ref|YP_008377623.1| - 0.038 13.5 2.5 0.099 12.2 0.2 2.2 2 0 0 2 2 2 0 Phage NinH protein HTH_31 PF13560.1 gi|529078620|ref|YP_008377623.1| - 0.071 13.3 1.1 0.12 12.5 0.1 2.0 3 0 0 3 3 1 0 Helix-turn-helix domain HTH_8 PF02954.14 gi|529078620|ref|YP_008377623.1| - 0.078 12.5 0.8 0.13 11.7 0.1 1.7 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family DUF1845 PF08900.6 gi|529078620|ref|YP_008377623.1| - 0.088 12.0 0.1 0.27 10.4 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF1845) DUF3479 PF11965.3 gi|529078620|ref|YP_008377623.1| - 0.091 12.5 0.3 0.14 11.9 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3479) Pox_F16 PF04708.7 gi|529078620|ref|YP_008377623.1| - 0.11 11.7 0.0 0.15 11.3 0.0 1.2 1 0 0 1 1 1 0 Poxvirus F16 protein HTH_29 PF13551.1 gi|529078620|ref|YP_008377623.1| - 0.12 12.4 1.6 0.42 10.7 0.1 2.3 2 1 0 2 2 2 0 Winged helix-turn helix RHH_1 PF01402.16 gi|529078621|ref|YP_008377624.1| - 1.1e-05 25.1 0.0 1.7e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family Plasmid_stabil PF05016.9 gi|529078622|ref|YP_008377625.1| - 0.00035 20.9 0.1 0.00062 20.1 0.1 1.4 1 1 0 1 1 1 1 Plasmid stabilisation system protein YcfA PF07927.7 gi|529078623|ref|YP_008377626.1| - 1.1e-11 44.5 0.0 1.2e-11 44.2 0.0 1.1 1 0 0 1 1 1 1 YcfA-like protein DUF4625 PF15418.1 gi|529078623|ref|YP_008377626.1| - 0.077 13.1 0.1 0.086 12.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4625) UPF0150 PF03681.10 gi|529078624|ref|YP_008377627.1| - 5.7e-07 29.0 0.2 1e-06 28.2 0.1 1.4 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) MscS_TM PF12794.2 gi|529078628|ref|YP_008377631.1| - 0.036 12.6 1.5 0.046 12.3 1.0 1.2 1 0 0 1 1 1 0 Mechanosensitive ion channel inner membrane domain 1 Inhibitor_I42 PF09394.5 gi|529078629|ref|YP_008377632.1| - 0.02 15.2 1.4 0.041 14.2 0.4 1.9 2 1 0 2 2 2 0 Chagasin family peptidase inhibitor I42 DUF719 PF05334.8 gi|529078629|ref|YP_008377632.1| - 1.6 8.7 6.9 1.5 8.8 4.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF719) CARDB PF07705.6 gi|529078629|ref|YP_008377632.1| - 6.7 6.8 12.4 0.27 11.3 1.6 2.8 2 1 1 3 3 3 0 CARDB DoxX_2 PF13564.1 gi|529078631|ref|YP_008377634.1| - 1.6 8.7 12.4 0.24 11.3 1.6 2.2 2 0 0 2 2 2 0 DoxX-like family Zot PF05707.7 gi|529078634|ref|YP_008377637.1| - 1.7e-05 24.3 0.0 4.8e-05 22.9 0.0 1.7 1 1 0 1 1 1 1 Zonular occludens toxin (Zot) AAA_25 PF13481.1 gi|529078634|ref|YP_008377637.1| - 0.00054 19.4 1.9 0.094 12.1 0.0 3.1 3 1 1 4 4 4 2 AAA domain AAA PF00004.24 gi|529078634|ref|YP_008377637.1| - 0.0012 19.0 0.0 0.0074 16.4 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|529078634|ref|YP_008377637.1| - 0.0025 17.5 0.3 0.02 14.6 0.0 2.5 3 0 0 3 3 3 1 Part of AAA domain AAA_22 PF13401.1 gi|529078634|ref|YP_008377637.1| - 0.018 15.1 0.2 2.7 8.1 0.1 3.1 2 1 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|529078634|ref|YP_008377637.1| - 0.16 11.6 0.3 2.1 7.9 0.2 2.2 1 1 0 1 1 1 0 NACHT domain DUF2269 PF10027.4 gi|529078635|ref|YP_008377638.1| - 0.0086 15.8 0.4 0.59 9.9 0.1 2.3 2 0 0 2 2 2 2 Predicted integral membrane protein (DUF2269) MarR_2 PF12802.2 gi|529078636|ref|YP_008377639.1| - 4.2e-05 23.1 0.0 8.8e-05 22.1 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|529078636|ref|YP_008377639.1| - 0.0082 15.8 0.0 0.015 15.0 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|529078636|ref|YP_008377639.1| - 0.035 14.4 0.0 0.09 13.1 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_23 PF13384.1 gi|529078636|ref|YP_008377639.1| - 0.035 13.7 0.1 0.1 12.3 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_Crp_2 PF13545.1 gi|529078636|ref|YP_008377639.1| - 0.074 12.8 0.0 0.16 11.7 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_IclR PF09339.5 gi|529078642|ref|YP_008377645.1| - 3.1e-05 23.4 0.0 7.2e-05 22.3 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|529078642|ref|YP_008377645.1| - 0.0011 18.2 0.0 0.0019 17.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|529078642|ref|YP_008377645.1| - 0.004 16.7 0.0 0.0081 15.8 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|529078642|ref|YP_008377645.1| - 0.021 14.4 0.0 0.038 13.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|529078642|ref|YP_008377645.1| - 0.13 12.0 0.4 0.38 10.4 0.1 1.9 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB DUF2789 PF10982.3 gi|529078642|ref|YP_008377645.1| - 0.13 12.2 0.0 0.24 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2789) FAD-oxidase_C PF02913.14 gi|529078643|ref|YP_008377646.1| - 2e-58 197.6 0.0 4.4e-58 196.5 0.0 1.6 2 0 0 2 2 2 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|529078643|ref|YP_008377646.1| - 2.4e-39 133.9 0.1 4.2e-39 133.1 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain CCG PF02754.11 gi|529078643|ref|YP_008377646.1| - 5.8e-08 32.6 0.0 3.7e-05 23.6 0.0 2.7 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_17 PF13534.1 gi|529078643|ref|YP_008377646.1| - 7.8e-08 32.5 2.8 1.6e-07 31.5 1.9 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|529078643|ref|YP_008377646.1| - 1.2e-07 31.5 5.0 2.3e-07 30.7 3.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|529078643|ref|YP_008377646.1| - 0.00011 22.5 2.7 0.00044 20.6 0.3 2.8 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|529078643|ref|YP_008377646.1| - 0.028 14.2 5.1 0.046 13.5 0.4 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|529078643|ref|YP_008377646.1| - 0.15 12.8 2.5 0.69 10.6 0.2 2.7 3 0 0 3 3 2 0 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|529078643|ref|YP_008377646.1| - 0.65 9.8 9.1 0.32 10.8 1.4 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|529078643|ref|YP_008377646.1| - 0.85 10.0 9.2 3.5 8.0 1.9 2.6 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|529078643|ref|YP_008377646.1| - 0.86 9.3 14.3 0.18 11.4 2.6 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_9 PF13187.1 gi|529078643|ref|YP_008377646.1| - 1.9 8.8 10.7 0.63 10.3 1.8 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|529078643|ref|YP_008377646.1| - 2.7 8.0 9.2 1.6 8.8 1.5 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain MatE PF01554.13 gi|529078644|ref|YP_008377647.1| - 6.5e-64 214.4 30.3 7.2e-33 113.5 8.1 2.4 2 0 0 2 2 2 2 MatE MVIN PF03023.9 gi|529078644|ref|YP_008377647.1| - 3.1e-07 29.1 19.4 0.00052 18.5 2.2 2.6 1 1 1 2 2 2 2 MviN-like protein Polysacc_synt_C PF14667.1 gi|529078644|ref|YP_008377647.1| - 5.5e-05 23.0 9.2 5.5e-05 23.0 6.4 5.2 4 2 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Glyco_hydro_2_N PF02837.13 gi|529078645|ref|YP_008377648.1| - 3e-15 56.1 1.3 1.2e-14 54.1 0.9 2.1 1 1 0 1 1 1 1 Glycosyl hydrolases family 2, sugar binding domain Glyco_hydro_2 PF00703.16 gi|529078645|ref|YP_008377648.1| - 2e-08 34.6 0.2 3.8e-07 30.5 0.0 2.4 2 0 0 2 2 2 1 Glycosyl hydrolases family 2 Glyco_hydro_2_C PF02836.12 gi|529078645|ref|YP_008377648.1| - 2.6e-07 29.8 0.1 4.3e-07 29.1 0.1 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, TIM barrel domain Usp PF00582.21 gi|529078646|ref|YP_008377649.1| - 3.1e-13 50.1 0.1 4e-13 49.7 0.0 1.1 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.19 gi|529078646|ref|YP_008377649.1| - 0.011 14.9 0.0 0.24 10.6 0.0 2.0 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel NIF3 PF01784.13 gi|529078646|ref|YP_008377649.1| - 0.014 15.0 0.0 0.017 14.6 0.0 1.2 1 0 0 1 1 1 0 NIF3 (NGG1p interacting factor 3) AP_endonuc_2 PF01261.19 gi|529078647|ref|YP_008377650.1| - 4.1e-32 111.1 1.0 7.3e-32 110.3 0.7 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel HAMP PF00672.20 gi|529078648|ref|YP_008377651.1| - 2e-09 37.4 14.9 2.3e-07 30.8 0.2 4.3 4 1 0 4 4 4 2 HAMP domain AAA_13 PF13166.1 gi|529078648|ref|YP_008377651.1| - 0.0026 16.3 10.0 0.0026 16.3 6.9 1.5 2 0 0 2 2 2 1 AAA domain Sec34 PF04136.10 gi|529078648|ref|YP_008377651.1| - 0.008 15.8 5.4 0.0084 15.8 1.9 2.2 1 1 1 2 2 2 2 Sec34-like family DUF4097 PF13349.1 gi|529078648|ref|YP_008377651.1| - 0.02 14.4 0.2 0.055 13.0 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4097) DUF3185 PF11381.3 gi|529078648|ref|YP_008377651.1| - 0.028 14.1 1.8 0.64 9.8 0.0 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF3185) NPV_P10 PF05531.7 gi|529078648|ref|YP_008377651.1| - 0.091 13.0 8.8 3 8.1 3.7 3.7 2 1 1 3 3 2 0 Nucleopolyhedrovirus P10 protein CitG PF01874.11 gi|529078648|ref|YP_008377651.1| - 0.12 11.5 3.5 0.081 12.1 0.2 2.2 2 1 0 2 2 2 0 ATP:dephospho-CoA triphosphoribosyl transferase Corona_S2 PF01601.11 gi|529078648|ref|YP_008377651.1| - 0.22 9.5 0.9 0.45 8.5 0.6 1.5 1 0 0 1 1 1 0 Coronavirus S2 glycoprotein DUF948 PF06103.6 gi|529078648|ref|YP_008377651.1| - 0.27 11.0 12.6 1.3 8.9 0.8 4.8 3 1 4 7 7 7 0 Bacterial protein of unknown function (DUF948) DUF3347 PF11827.3 gi|529078648|ref|YP_008377651.1| - 0.6 10.0 8.9 0.058 13.4 1.0 2.5 1 1 0 2 2 2 0 Protein of unknown function (DUF3347) Atg14 PF10186.4 gi|529078648|ref|YP_008377651.1| - 1.7 7.5 7.6 0.37 9.6 0.8 2.3 1 1 1 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 Prominin PF05478.6 gi|529078648|ref|YP_008377651.1| - 1.7 6.0 3.3 2.1 5.7 1.0 1.7 1 1 0 1 1 1 0 Prominin ISG65-75 PF11727.3 gi|529078648|ref|YP_008377651.1| - 1.9 7.4 18.8 1.8 7.5 3.6 3.2 1 1 2 3 3 3 0 Invariant surface glycoprotein DUF1049 PF06305.6 gi|529078648|ref|YP_008377651.1| - 2.3 7.7 4.2 1.2 8.6 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) CorA PF01544.13 gi|529078648|ref|YP_008377651.1| - 2.6 7.0 15.7 3.6 6.5 0.1 3.2 1 1 2 3 3 3 0 CorA-like Mg2+ transporter protein MCPsignal PF00015.16 gi|529078648|ref|YP_008377651.1| - 3.2 7.2 31.0 0.013 15.1 8.7 3.5 2 1 2 4 4 4 0 Methyl-accepting chemotaxis protein (MCP) signalling domain IncA PF04156.9 gi|529078648|ref|YP_008377651.1| - 3.9 7.0 36.0 1.3 8.6 13.6 3.9 2 2 0 2 2 2 0 IncA protein WXG100 PF06013.7 gi|529078648|ref|YP_008377651.1| - 8.1 6.5 22.9 0.89 9.6 0.1 5.1 5 1 1 6 6 5 0 Proteins of 100 residues with WXG Syntaxin PF00804.20 gi|529078648|ref|YP_008377651.1| - 9.3 6.4 14.9 0.79 9.9 4.8 3.1 2 1 1 3 3 3 0 Syntaxin HAMP PF00672.20 gi|529078649|ref|YP_008377652.1| - 2.2e-12 46.9 9.6 5.3e-09 36.1 0.1 3.9 3 1 0 3 3 3 2 HAMP domain AAA_13 PF13166.1 gi|529078649|ref|YP_008377652.1| - 0.0037 15.8 10.2 0.0057 15.1 7.0 1.3 1 0 0 1 1 1 1 AAA domain Sec34 PF04136.10 gi|529078649|ref|YP_008377652.1| - 0.0055 16.4 7.2 0.44 10.2 0.2 2.8 1 1 1 2 2 2 2 Sec34-like family IncA PF04156.9 gi|529078649|ref|YP_008377652.1| - 0.0086 15.6 22.0 0.017 14.7 4.1 2.9 2 1 1 3 3 3 2 IncA protein NPV_P10 PF05531.7 gi|529078649|ref|YP_008377652.1| - 0.034 14.3 7.4 0.96 9.7 3.3 3.6 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein MCPsignal PF00015.16 gi|529078649|ref|YP_008377652.1| - 0.047 13.2 23.7 0.012 15.2 8.6 2.9 1 1 2 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF3243 PF11588.3 gi|529078649|ref|YP_008377652.1| - 0.081 12.9 1.8 0.48 10.4 0.1 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF3243) Corona_S2 PF01601.11 gi|529078649|ref|YP_008377652.1| - 0.32 9.0 0.8 0.48 8.4 0.6 1.2 1 0 0 1 1 1 0 Coronavirus S2 glycoprotein DUF948 PF06103.6 gi|529078649|ref|YP_008377652.1| - 0.96 9.3 11.9 1.3 8.9 0.6 4.2 2 1 1 4 4 3 0 Bacterial protein of unknown function (DUF948) WXG100 PF06013.7 gi|529078649|ref|YP_008377652.1| - 1.3 9.0 24.0 0.8 9.7 0.0 5.9 4 2 1 5 5 5 0 Proteins of 100 residues with WXG DUF3347 PF11827.3 gi|529078649|ref|YP_008377652.1| - 2.3 8.2 9.9 0.17 11.8 1.3 2.5 1 1 0 2 2 2 0 Protein of unknown function (DUF3347) CorA PF01544.13 gi|529078649|ref|YP_008377652.1| - 3.6 6.5 16.2 4.7 6.1 0.1 3.1 1 1 1 3 3 3 0 CorA-like Mg2+ transporter protein DUF607 PF04678.8 gi|529078649|ref|YP_008377652.1| - 4 7.3 6.2 1.2 9.0 0.3 2.6 2 1 1 3 3 3 0 Protein of unknown function, DUF607 TMPIT PF07851.8 gi|529078649|ref|YP_008377652.1| - 4.4 6.2 5.8 1 8.3 0.9 2.1 1 1 1 2 2 2 0 TMPIT-like protein Mt_ATP-synt_D PF05873.7 gi|529078649|ref|YP_008377652.1| - 8.3 6.0 7.5 7 6.2 0.9 2.8 1 1 2 3 3 3 0 ATP synthase D chain, mitochondrial (ATP5H) DUF1664 PF07889.7 gi|529078649|ref|YP_008377652.1| - 9.1 6.0 10.7 2.3 8.0 1.9 3.3 1 1 2 4 4 4 0 Protein of unknown function (DUF1664) FGGY_N PF00370.16 gi|529078650|ref|YP_008377653.1| - 1.8e-83 279.5 0.0 2.3e-83 279.2 0.0 1.1 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.11 gi|529078650|ref|YP_008377653.1| - 6.9e-37 126.9 0.0 1.1e-36 126.2 0.0 1.3 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.15 gi|529078650|ref|YP_008377653.1| - 0.047 12.9 0.0 0.28 10.4 0.0 2.0 2 0 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family DNA_pol_B_thumb PF14791.1 gi|529078651|ref|YP_008377654.1| - 2.6e-25 87.9 0.0 7e-25 86.4 0.0 1.8 1 0 0 1 1 1 1 DNA polymerase beta thumb HHH_8 PF14716.1 gi|529078651|ref|YP_008377654.1| - 4.9e-19 68.2 5.5 8.5e-17 61.0 1.3 3.6 2 1 1 3 3 3 1 Helix-hairpin-helix domain HHH_5 PF14520.1 gi|529078651|ref|YP_008377654.1| - 2.7e-17 62.6 19.2 4e-12 46.1 0.3 4.4 4 1 0 4 4 4 2 Helix-hairpin-helix domain PHP PF02811.14 gi|529078651|ref|YP_008377654.1| - 9.3e-14 51.5 0.0 3.5e-13 49.7 0.0 2.0 1 1 0 1 1 1 1 PHP domain HHH_2 PF12826.2 gi|529078651|ref|YP_008377654.1| - 9.4e-06 25.4 5.2 0.0025 17.6 0.2 3.3 2 1 2 4 4 4 2 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.4 gi|529078651|ref|YP_008377654.1| - 0.00015 21.2 0.0 0.00082 18.8 0.0 2.3 1 1 1 2 2 2 1 Fingers domain of DNA polymerase lambda DNA_pol_B_palm PF14792.1 gi|529078651|ref|YP_008377654.1| - 0.0014 18.6 0.0 0.0032 17.5 0.0 1.7 1 0 0 1 1 1 1 DNA polymerase beta palm HHH PF00633.18 gi|529078651|ref|YP_008377654.1| - 0.0019 17.7 3.9 0.016 14.9 0.1 3.6 1 1 2 3 3 3 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|529078651|ref|YP_008377654.1| - 0.02 14.8 0.1 5.8 6.9 0.0 3.2 3 0 0 3 3 3 0 Helix-hairpin-helix motif DUF2346 PF09803.4 gi|529078652|ref|YP_008377655.1| - 0.14 12.0 0.6 0.29 11.0 0.4 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2346) Rhomboid PF01694.17 gi|529078653|ref|YP_008377656.1| - 5.1e-26 91.4 16.4 5.1e-26 91.4 11.4 1.4 2 0 0 2 2 2 1 Rhomboid family zf-AN1 PF01428.11 gi|529078653|ref|YP_008377656.1| - 6.1e-14 51.6 7.1 8.4e-14 51.1 4.9 1.2 1 0 0 1 1 1 1 AN1-like Zinc finger DUF1751 PF08551.5 gi|529078653|ref|YP_008377656.1| - 0.00046 20.4 1.1 0.00046 20.4 0.8 2.1 2 1 1 3 3 3 1 Eukaryotic integral membrane protein (DUF1751) FYVE PF01363.16 gi|529078653|ref|YP_008377656.1| - 0.0089 15.9 0.9 0.012 15.4 0.6 1.2 1 0 0 1 1 1 1 FYVE zinc finger C1_3 PF07649.7 gi|529078653|ref|YP_008377656.1| - 0.12 12.4 5.7 0.18 11.8 3.9 1.3 1 0 0 1 1 1 0 C1-like domain C1_2 PF03107.11 gi|529078653|ref|YP_008377656.1| - 1.2 9.3 5.1 1.9 8.6 3.5 1.3 1 0 0 1 1 1 0 C1 domain DUF3318 PF11780.3 gi|529078653|ref|YP_008377656.1| - 3.4 7.2 8.9 1.9 8.0 0.9 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3318) Endonuclease_5 PF04493.9 gi|529078654|ref|YP_008377657.1| - 4e-47 160.2 0.0 5.4e-47 159.8 0.0 1.2 1 0 0 1 1 1 1 Endonuclease V adh_short PF00106.20 gi|529078655|ref|YP_008377658.1| - 3.2e-33 115.0 2.1 4.8e-33 114.4 0.7 1.7 1 1 1 2 2 2 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|529078655|ref|YP_008377658.1| - 1.2e-18 67.7 0.0 1.6e-18 67.3 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|529078655|ref|YP_008377658.1| - 9.6e-13 48.1 0.2 1.6e-12 47.4 0.2 1.4 1 0 0 1 1 1 1 KR domain DUF1776 PF08643.5 gi|529078655|ref|YP_008377658.1| - 4.6e-10 39.1 0.0 6.2e-10 38.6 0.0 1.1 1 0 0 1 1 1 1 Fungal family of unknown function (DUF1776) NAD_binding_10 PF13460.1 gi|529078655|ref|YP_008377658.1| - 5.9e-06 26.4 1.6 9e-06 25.8 1.1 1.3 1 0 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|529078655|ref|YP_008377658.1| - 2.2e-05 24.0 0.0 0.00017 21.1 0.0 2.2 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|529078655|ref|YP_008377658.1| - 0.021 13.7 0.4 0.038 12.8 0.0 1.6 2 0 0 2 2 2 0 RmlD substrate binding domain DUF4147 PF13660.1 gi|529078656|ref|YP_008377659.1| - 5.3e-80 267.9 2.1 5.3e-80 267.9 1.5 1.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4147) MOFRL PF05161.8 gi|529078656|ref|YP_008377659.1| - 1.5e-25 89.4 1.5 6.2e-25 87.3 0.9 2.0 2 0 0 2 2 2 1 MOFRL family PSK_trans_fac PF07704.6 gi|529078657|ref|YP_008377660.1| - 0.0091 16.6 1.4 0.032 14.9 1.0 1.8 1 1 0 1 1 1 1 Rv0623-like transcription factor Lipase_chap PF03280.9 gi|529078657|ref|YP_008377660.1| - 0.029 13.9 0.7 0.029 13.8 0.5 1.2 1 0 0 1 1 1 0 Proteobacterial lipase chaperone protein PIN PF01850.16 gi|529078658|ref|YP_008377661.1| - 0.024 14.9 0.5 0.037 14.3 0.4 1.3 1 0 0 1 1 1 0 PIN domain adh_short PF00106.20 gi|529078659|ref|YP_008377662.1| - 1.5e-24 86.7 1.4 3e-24 85.8 1.0 1.5 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|529078659|ref|YP_008377662.1| - 6.9e-08 32.3 0.5 2.1e-05 24.2 0.0 2.1 2 0 0 2 2 2 2 KR domain NAD_binding_10 PF13460.1 gi|529078659|ref|YP_008377662.1| - 1.3e-07 31.8 1.3 2.6e-07 30.8 0.9 1.4 1 1 0 1 1 1 1 NADH(P)-binding adh_short_C2 PF13561.1 gi|529078659|ref|YP_008377662.1| - 4.5e-07 29.8 0.0 6e-07 29.4 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Epimerase PF01370.16 gi|529078659|ref|YP_008377662.1| - 0.00029 20.3 0.0 0.00041 19.8 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family ArsA_ATPase PF02374.10 gi|529078660|ref|YP_008377663.1| - 3.9e-80 269.1 0.0 5.2e-80 268.7 0.0 1.2 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.18 gi|529078660|ref|YP_008377663.1| - 4.6e-12 45.7 0.3 3.8e-11 42.7 0.2 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|529078660|ref|YP_008377663.1| - 2.5e-06 27.4 0.2 0.00063 19.7 0.0 2.6 3 0 0 3 3 3 1 AAA domain SRP54 PF00448.17 gi|529078660|ref|YP_008377663.1| - 0.00059 19.3 0.1 0.18 11.2 0.1 2.3 2 0 0 2 2 2 2 SRP54-type protein, GTPase domain AAA_10 PF12846.2 gi|529078660|ref|YP_008377663.1| - 0.0028 17.1 0.1 0.0055 16.1 0.1 1.4 1 1 0 1 1 1 1 AAA-like domain KaiC PF06745.8 gi|529078660|ref|YP_008377663.1| - 0.0077 15.3 0.0 0.017 14.2 0.0 1.5 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|529078660|ref|YP_008377663.1| - 0.015 14.7 5.1 0.025 13.9 1.7 2.6 1 1 0 2 2 2 0 AAA domain Fer4_NifH PF00142.13 gi|529078660|ref|YP_008377663.1| - 0.016 14.4 0.0 0.026 13.6 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family PhoH PF02562.11 gi|529078660|ref|YP_008377663.1| - 0.019 14.2 0.0 0.033 13.4 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein IstB_IS21 PF01695.12 gi|529078660|ref|YP_008377663.1| - 0.026 13.9 0.0 0.046 13.1 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_19 PF13245.1 gi|529078660|ref|YP_008377663.1| - 0.032 13.9 0.4 4.9 6.9 0.3 2.6 2 0 0 2 2 2 0 Part of AAA domain YhjQ PF06564.7 gi|529078660|ref|YP_008377663.1| - 0.036 13.4 0.0 0.07 12.4 0.0 1.4 1 0 0 1 1 1 0 YhjQ protein Zeta_toxin PF06414.7 gi|529078660|ref|YP_008377663.1| - 0.041 12.9 0.6 0.12 11.4 0.1 2.0 3 0 0 3 3 3 0 Zeta toxin ParA PF10609.4 gi|529078660|ref|YP_008377663.1| - 0.13 12.1 0.3 0.66 9.8 0.0 2.1 2 0 0 2 2 2 0 ParA/MinD ATPase like Helicase_C_2 PF13307.1 gi|529078662|ref|YP_008377665.1| - 3e-23 82.5 0.0 5e-23 81.8 0.0 1.3 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|529078662|ref|YP_008377665.1| - 7.8e-13 48.1 0.0 1.5e-10 40.7 0.0 2.1 2 0 0 2 2 2 2 DEAD_2 DEAD PF00270.24 gi|529078662|ref|YP_008377665.1| - 1.9e-10 40.5 0.0 0.00012 21.6 0.0 2.4 2 0 0 2 2 2 2 DEAD/DEAH box helicase PhoH PF02562.11 gi|529078662|ref|YP_008377665.1| - 2.5e-07 30.1 0.1 7.6e-05 22.0 0.0 2.2 2 0 0 2 2 2 2 PhoH-like protein ResIII PF04851.10 gi|529078662|ref|YP_008377665.1| - 3.7e-06 26.9 0.0 0.0058 16.4 0.0 2.2 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit AAA_30 PF13604.1 gi|529078662|ref|YP_008377665.1| - 5.8e-06 26.0 1.1 0.0056 16.2 0.1 2.6 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|529078662|ref|YP_008377665.1| - 2.9e-05 23.7 2.1 5.9e-05 22.7 0.3 2.4 2 0 0 2 2 2 1 Part of AAA domain AAA_22 PF13401.1 gi|529078662|ref|YP_008377665.1| - 0.016 15.3 0.1 2.5 8.2 0.0 2.5 2 0 0 2 2 2 0 AAA domain SNF2_N PF00176.18 gi|529078662|ref|YP_008377665.1| - 0.056 12.2 0.0 0.25 10.0 0.0 1.8 2 0 0 2 2 2 0 SNF2 family N-terminal domain Mg_chelatase PF01078.16 gi|529078662|ref|YP_008377665.1| - 0.13 11.4 0.2 0.29 10.2 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI DUF2075 PF09848.4 gi|529078662|ref|YP_008377665.1| - 0.18 10.7 0.0 10 4.9 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) DUF1253 PF06862.7 gi|529078662|ref|YP_008377665.1| - 0.38 9.0 0.0 0.91 7.8 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1253) APH PF01636.18 gi|529078663|ref|YP_008377666.1| - 4.3e-23 82.2 0.9 7.1e-23 81.5 0.6 1.3 1 0 0 1 1 1 1 Phosphotransferase enzyme family Fructosamin_kin PF03881.9 gi|529078663|ref|YP_008377666.1| - 0.00015 20.8 0.0 0.00034 19.6 0.0 1.5 1 1 0 1 1 1 1 Fructosamine kinase CinA PF02464.12 gi|529078664|ref|YP_008377667.1| - 1.5e-56 190.1 0.1 1.7e-56 189.9 0.1 1.0 1 0 0 1 1 1 1 Competence-damaged protein DUF457 PF04307.9 gi|529078665|ref|YP_008377668.1| - 4.3e-18 65.1 2.7 5.7e-18 64.7 1.9 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Zn_dep_PLPC PF00882.13 gi|529078665|ref|YP_008377668.1| - 0.0019 17.8 0.1 0.0031 17.2 0.0 1.3 1 0 0 1 1 1 1 Zinc dependent phospholipase C DUF95 PF01944.12 gi|529078665|ref|YP_008377668.1| - 0.84 9.2 5.6 2.2 7.8 3.9 1.8 1 1 0 1 1 1 0 Integral membrane protein DUF95 PHP_C PF13263.1 gi|529078666|ref|YP_008377669.1| - 9.3e-17 60.2 0.3 2.2e-16 59.0 0.0 1.8 2 0 0 2 2 2 1 PHP-associated zf-C2H2 PF00096.21 gi|529078667|ref|YP_008377670.1| - 4.4e-05 23.5 0.0 0.0039 17.4 0.0 2.5 2 0 0 2 2 2 1 Zinc finger, C2H2 type zf-C2H2_4 PF13894.1 gi|529078667|ref|YP_008377670.1| - 0.0077 16.4 0.1 0.041 14.2 0.0 2.1 2 0 0 2 2 2 1 C2H2-type zinc finger RRN7 PF11781.3 gi|529078667|ref|YP_008377670.1| - 0.13 11.7 2.2 7.2 6.2 0.0 2.5 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 Acetyltransf_1 PF00583.19 gi|529078668|ref|YP_008377671.1| - 2.2e-07 30.8 0.0 3.4e-07 30.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_CG PF14542.1 gi|529078668|ref|YP_008377671.1| - 0.0023 17.8 0.0 0.0033 17.2 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_10 PF13673.1 gi|529078668|ref|YP_008377671.1| - 0.0087 16.1 0.0 0.012 15.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|529078668|ref|YP_008377671.1| - 0.011 15.9 0.0 0.015 15.4 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|529078668|ref|YP_008377671.1| - 0.026 14.7 0.0 0.036 14.2 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Usg PF06233.7 gi|529078668|ref|YP_008377671.1| - 0.064 13.1 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 Usg-like family ThiC PF01964.13 gi|529078669|ref|YP_008377672.1| - 3e-189 628.9 0.0 3.4e-189 628.7 0.0 1.0 1 0 0 1 1 1 1 ThiC family zf-ribbon_3 PF13248.1 gi|529078669|ref|YP_008377672.1| - 0.086 12.0 0.2 0.16 11.1 0.1 1.4 1 0 0 1 1 1 0 zinc-ribbon domain DUF2237 PF09996.4 gi|529078670|ref|YP_008377673.1| - 1.8e-50 169.3 0.0 2e-50 169.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2237) tRNA_deacylase PF04414.7 gi|529078671|ref|YP_008377674.1| - 3.7e-62 209.2 0.0 5.2e-62 208.7 0.0 1.2 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase DUF3400 PF11880.3 gi|529078671|ref|YP_008377674.1| - 0.013 14.6 0.1 0.25 10.5 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF3400) Na_Ca_ex PF01699.19 gi|529078672|ref|YP_008377675.1| - 4.8e-15 55.3 24.8 3e-08 33.3 4.6 2.6 3 0 0 3 3 3 2 Sodium/calcium exchanger protein SPC25 PF06703.6 gi|529078672|ref|YP_008377675.1| - 0.29 10.7 1.8 0.64 9.5 0.4 2.2 2 0 0 2 2 2 0 Microsomal signal peptidase 25 kDa subunit (SPC25) Shikimate_dh_N PF08501.6 gi|529078673|ref|YP_008377676.1| - 9.8e-26 89.6 0.0 1.9e-25 88.6 0.0 1.5 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.15 gi|529078673|ref|YP_008377676.1| - 1.5e-13 50.9 0.1 2.3e-13 50.4 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Saccharop_dh PF03435.13 gi|529078673|ref|YP_008377676.1| - 1.5e-05 24.2 0.9 2e-05 23.7 0.6 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_10 PF13460.1 gi|529078673|ref|YP_008377676.1| - 0.00014 21.9 3.2 0.00014 21.8 1.3 1.7 2 0 0 2 2 2 1 NADH(P)-binding F420_oxidored PF03807.12 gi|529078673|ref|YP_008377676.1| - 0.0014 19.0 0.3 0.003 17.9 0.2 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.7 gi|529078673|ref|YP_008377676.1| - 0.0017 17.7 0.3 0.0078 15.5 0.1 1.9 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.14 gi|529078673|ref|YP_008377676.1| - 0.0027 16.8 0.0 0.0044 16.2 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|529078673|ref|YP_008377676.1| - 0.14 11.8 0.7 0.22 11.1 0.5 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HHH_5 PF14520.1 gi|529078674|ref|YP_008377677.1| - 4.4e-10 39.5 0.6 4.4e-10 39.5 0.4 1.8 2 0 0 2 2 2 1 Helix-hairpin-helix domain DUF4332 PF14229.1 gi|529078674|ref|YP_008377677.1| - 0.00093 19.1 0.1 0.012 15.5 0.1 2.1 1 1 0 1 1 1 1 Domain of unknown function (DUF4332) Cdd1 PF11731.3 gi|529078674|ref|YP_008377677.1| - 0.008 16.0 0.0 0.012 15.5 0.0 1.3 1 0 0 1 1 1 1 Pathogenicity locus DNA_pol_lambd_f PF10391.4 gi|529078674|ref|YP_008377677.1| - 0.017 14.6 0.0 0.027 14.0 0.0 1.3 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda HHH PF00633.18 gi|529078674|ref|YP_008377677.1| - 0.04 13.6 0.0 0.14 11.9 0.0 2.0 1 0 0 1 1 1 0 Helix-hairpin-helix motif CENP-T PF15511.1 gi|529078674|ref|YP_008377677.1| - 1.2 8.2 19.8 1.5 8.0 13.7 1.1 1 0 0 1 1 1 0 Centromere kinetochore component CENP-T Pneumo_att_G PF05539.6 gi|529078674|ref|YP_008377677.1| - 1.4 8.2 14.9 1.6 8.0 10.4 1.1 1 0 0 1 1 1 0 Pneumovirinae attachment membrane glycoprotein G Chorismate_bind PF00425.13 gi|529078675|ref|YP_008377678.1| - 2.9e-99 331.5 0.0 4.3e-99 331.0 0.0 1.3 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|529078675|ref|YP_008377678.1| - 3.8e-15 56.1 0.0 3.3e-14 53.0 0.0 2.4 2 0 0 2 2 2 1 Anthranilate synthase component I, N terminal region GATase PF00117.23 gi|529078676|ref|YP_008377679.1| - 3.9e-40 137.3 0.0 5.3e-40 136.9 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|529078676|ref|YP_008377679.1| - 3e-09 36.6 0.0 4.9e-09 35.9 0.0 1.3 1 0 0 1 1 1 1 Peptidase C26 Aminotran_4 PF01063.14 gi|529078677|ref|YP_008377680.1| - 8.3e-49 166.1 0.0 9.9e-49 165.8 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class IV ABC2_membrane PF01061.19 gi|529078678|ref|YP_008377681.1| - 3.5e-26 91.6 9.0 3.5e-26 91.6 6.2 1.5 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|529078678|ref|YP_008377681.1| - 4.7e-15 55.4 1.1 4.7e-15 55.4 0.8 2.0 1 1 1 2 2 2 2 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|529078678|ref|YP_008377681.1| - 2.1e-07 30.1 2.7 2.1e-07 30.1 1.9 1.9 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|529078678|ref|YP_008377681.1| - 2.5e-05 23.5 9.3 5.5e-05 22.4 6.4 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein DUF2074 PF09847.4 gi|529078678|ref|YP_008377681.1| - 0.00029 19.7 1.6 0.0004 19.2 1.1 1.1 1 0 0 1 1 1 1 Predicted permease (DUF2074) DUF2678 PF10856.3 gi|529078678|ref|YP_008377681.1| - 0.063 13.0 2.3 0.058 13.1 0.4 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2678) ABC_tran PF00005.22 gi|529078679|ref|YP_008377682.1| - 1.5e-27 96.5 0.0 2.3e-27 95.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|529078679|ref|YP_008377682.1| - 8.1e-16 58.8 0.0 1.5e-09 38.2 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|529078679|ref|YP_008377682.1| - 6.2e-05 22.2 0.0 0.0026 16.8 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|529078679|ref|YP_008377682.1| - 0.00012 22.5 0.0 0.00016 22.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|529078679|ref|YP_008377682.1| - 0.00015 21.7 0.2 0.00049 20.1 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.12 gi|529078679|ref|YP_008377682.1| - 0.00094 18.6 0.0 0.19 11.1 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_33 PF13671.1 gi|529078679|ref|YP_008377682.1| - 0.0022 17.8 0.1 0.076 12.8 0.1 2.3 2 0 0 2 2 2 1 AAA domain UPF0079 PF02367.12 gi|529078679|ref|YP_008377682.1| - 0.0035 16.9 0.1 0.0061 16.1 0.1 1.3 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 Zeta_toxin PF06414.7 gi|529078679|ref|YP_008377682.1| - 0.0044 16.1 0.0 0.0065 15.5 0.0 1.2 1 0 0 1 1 1 1 Zeta toxin AAA_30 PF13604.1 gi|529078679|ref|YP_008377682.1| - 0.005 16.4 0.1 0.52 9.8 0.0 3.0 3 1 1 4 4 4 1 AAA domain SMC_N PF02463.14 gi|529078679|ref|YP_008377682.1| - 0.0054 15.9 0.0 0.34 10.1 0.0 2.5 3 0 0 3 3 3 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|529078679|ref|YP_008377682.1| - 0.0094 15.4 0.2 0.019 14.4 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.24 gi|529078679|ref|YP_008377682.1| - 0.0099 16.0 0.0 0.021 15.0 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.1 gi|529078679|ref|YP_008377682.1| - 0.014 15.4 0.0 0.024 14.5 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|529078679|ref|YP_008377682.1| - 0.016 14.6 0.2 0.43 9.9 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|529078679|ref|YP_008377682.1| - 0.022 15.5 0.0 0.042 14.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|529078679|ref|YP_008377682.1| - 0.034 14.0 0.0 0.15 11.9 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NB-ARC PF00931.17 gi|529078679|ref|YP_008377682.1| - 0.068 12.0 0.1 0.11 11.3 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain MMR_HSR1 PF01926.18 gi|529078679|ref|YP_008377682.1| - 0.085 12.8 0.1 0.5 10.3 0.0 2.0 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_13 PF13166.1 gi|529078679|ref|YP_008377682.1| - 0.085 11.3 0.2 0.13 10.6 0.2 1.2 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|529078679|ref|YP_008377682.1| - 0.086 12.9 0.1 0.15 12.2 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|529078679|ref|YP_008377682.1| - 0.12 12.0 0.0 0.78 9.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) DUF258 PF03193.11 gi|529078679|ref|YP_008377682.1| - 0.12 11.5 0.0 0.21 10.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 PduV-EutP PF10662.4 gi|529078679|ref|YP_008377682.1| - 0.19 11.2 0.0 0.44 10.0 0.0 1.6 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation UbiA PF01040.13 gi|529078681|ref|YP_008377684.1| - 5.5e-29 101.1 29.0 5.5e-29 101.1 20.1 2.2 2 0 0 2 2 2 1 UbiA prenyltransferase family COX15-CtaA PF02628.10 gi|529078681|ref|YP_008377684.1| - 3.6e-13 49.0 17.6 3.6e-13 49.0 12.2 3.8 2 2 1 3 3 3 1 Cytochrome oxidase assembly protein COX2 PF00116.15 gi|529078682|ref|YP_008377685.1| - 8.9e-24 83.6 0.3 1.3e-22 79.8 0.2 2.2 1 1 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain COX2_TM PF02790.10 gi|529078682|ref|YP_008377685.1| - 5.4e-08 32.6 0.0 8.7e-08 32.0 0.0 1.4 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, transmembrane domain Cupredoxin_1 PF13473.1 gi|529078682|ref|YP_008377685.1| - 0.0015 18.3 0.0 0.0029 17.4 0.0 1.5 1 0 0 1 1 1 1 Cupredoxin-like domain DUF1772 PF08592.6 gi|529078682|ref|YP_008377685.1| - 0.083 12.6 4.5 0.12 12.1 3.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1772) DUF3382 PF11862.3 gi|529078682|ref|YP_008377685.1| - 0.77 9.7 4.8 2.8 7.9 0.2 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF3382) TrbC PF04956.8 gi|529078682|ref|YP_008377685.1| - 2.7 8.0 5.1 11 6.0 3.7 1.8 1 1 1 2 2 2 0 TrbC/VIRB2 family MaoC_dehydratas PF01575.14 gi|529078683|ref|YP_008377686.1| - 3.9e-17 61.7 0.0 5e-17 61.4 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|529078683|ref|YP_008377686.1| - 1.8e-06 27.7 0.0 2.5e-06 27.3 0.0 1.3 1 0 0 1 1 1 1 N-terminal half of MaoC dehydratase PS-DH PF14765.1 gi|529078683|ref|YP_008377686.1| - 0.023 13.8 0.1 0.028 13.5 0.0 1.1 1 0 0 1 1 1 0 Polyketide synthase dehydratase ABC_tran PF00005.22 gi|529078684|ref|YP_008377687.1| - 7e-29 100.8 0.0 1.2e-28 100.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|529078684|ref|YP_008377687.1| - 8.8e-09 35.7 0.0 9.3e-05 22.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|529078684|ref|YP_008377687.1| - 4.9e-05 22.6 0.0 0.00027 20.2 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Zeta_toxin PF06414.7 gi|529078684|ref|YP_008377687.1| - 0.00081 18.5 0.0 0.0015 17.7 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_30 PF13604.1 gi|529078684|ref|YP_008377687.1| - 0.0013 18.3 1.0 0.024 14.2 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|529078684|ref|YP_008377687.1| - 0.0014 19.0 0.0 0.0018 18.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|529078684|ref|YP_008377687.1| - 0.0018 17.7 0.1 0.0039 16.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|529078684|ref|YP_008377687.1| - 0.0063 15.0 0.0 0.28 9.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.16 gi|529078684|ref|YP_008377687.1| - 0.014 14.5 0.0 0.022 13.9 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_33 PF13671.1 gi|529078684|ref|YP_008377687.1| - 0.021 14.7 0.5 0.098 12.5 0.3 2.3 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|529078684|ref|YP_008377687.1| - 0.045 13.9 0.2 0.098 12.8 0.1 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|529078684|ref|YP_008377687.1| - 0.045 12.6 0.0 0.066 12.0 0.0 1.1 1 0 0 1 1 1 0 NB-ARC domain AAA_17 PF13207.1 gi|529078684|ref|YP_008377687.1| - 0.054 14.3 0.5 0.15 12.9 0.1 1.9 2 1 0 2 2 2 0 AAA domain UPF0079 PF02367.12 gi|529078684|ref|YP_008377687.1| - 0.084 12.5 0.1 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_22 PF13401.1 gi|529078684|ref|YP_008377687.1| - 0.093 12.8 0.5 0.68 10.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|529078684|ref|YP_008377687.1| - 0.22 11.4 3.0 0.23 11.4 0.8 2.1 2 1 0 2 2 2 0 AAA ATPase domain FecCD PF01032.13 gi|529078685|ref|YP_008377688.1| - 1.8e-90 302.9 32.7 3.6e-90 301.9 22.5 1.5 1 1 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|529078685|ref|YP_008377688.1| - 8.1e-05 22.0 16.6 8.1e-05 22.0 11.5 1.9 2 0 0 2 2 2 1 ABC 3 transport family Peripla_BP_2 PF01497.13 gi|529078686|ref|YP_008377689.1| - 8.4e-32 110.1 0.3 8.4e-32 110.1 0.2 1.5 2 0 0 2 2 2 1 Periplasmic binding protein Nitro_FeMo-Co PF02579.12 gi|529078686|ref|YP_008377689.1| - 0.096 12.7 0.0 0.22 11.6 0.0 1.6 1 0 0 1 1 1 0 Dinitrogenase iron-molybdenum cofactor SRP19 PF01922.12 gi|529078687|ref|YP_008377690.1| - 2.5e-27 95.3 0.0 2.7e-27 95.1 0.0 1.0 1 0 0 1 1 1 1 SRP19 protein Gar1 PF04410.9 gi|529078688|ref|YP_008377691.1| - 7.8e-06 25.4 0.0 8.6e-06 25.2 0.0 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region DUF1119 PF06550.6 gi|529078689|ref|YP_008377692.1| - 9.3e-83 277.6 18.8 2.7e-82 276.1 13.1 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF1119) Presenilin PF01080.12 gi|529078689|ref|YP_008377692.1| - 2.1e-05 23.5 1.8 0.034 12.9 1.1 2.3 2 0 0 2 2 2 2 Presenilin Peptidase_A22B PF04258.8 gi|529078689|ref|YP_008377692.1| - 0.0018 17.7 8.2 0.038 13.4 0.2 3.1 3 0 0 3 3 3 2 Signal peptide peptidase TFIIA PF03153.8 gi|529078689|ref|YP_008377692.1| - 1.4 8.7 7.6 1.7 8.4 5.3 1.0 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit DUF3054 PF11255.3 gi|529078690|ref|YP_008377693.1| - 7.8e-23 80.4 13.1 9.6e-23 80.1 9.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3054) CoA_binding_3 PF13727.1 gi|529078690|ref|YP_008377693.1| - 0.00016 21.5 7.7 0.00016 21.5 5.3 1.6 1 1 1 2 2 2 1 CoA-binding domain DUF3353 PF11833.3 gi|529078690|ref|YP_008377693.1| - 8.7 5.7 8.6 3.3 7.1 3.7 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3353) Acetyltransf_1 PF00583.19 gi|529078691|ref|YP_008377694.1| - 1.4e-10 41.0 0.1 2.6e-10 40.2 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|529078691|ref|YP_008377694.1| - 1.2e-06 28.5 0.0 2.6e-06 27.4 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|529078691|ref|YP_008377694.1| - 4.7e-05 23.5 0.2 8.8e-05 22.6 0.0 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|529078691|ref|YP_008377694.1| - 0.00068 19.4 0.2 0.0017 18.2 0.0 1.7 2 0 0 2 2 2 1 GCN5-related N-acetyl-transferase XPG_I PF00867.13 gi|529078692|ref|YP_008377695.1| - 5.9e-25 87.1 0.0 1.2e-24 86.1 0.0 1.5 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.12 gi|529078692|ref|YP_008377695.1| - 3.5e-14 52.8 0.0 6.2e-14 52.0 0.0 1.3 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.15 gi|529078692|ref|YP_008377695.1| - 0.0034 17.6 0.0 0.0062 16.7 0.0 1.5 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc_N PF02739.11 gi|529078692|ref|YP_008377695.1| - 0.008 15.5 0.0 0.012 15.0 0.0 1.3 1 0 0 1 1 1 1 5'-3' exonuclease, N-terminal resolvase-like domain Ribosomal_S2 PF00318.15 gi|529078693|ref|YP_008377696.1| - 4.6e-36 124.0 0.0 4.3e-18 65.2 0.1 2.1 1 1 1 2 2 2 2 Ribosomal protein S2 Enolase_C PF00113.17 gi|529078694|ref|YP_008377697.1| - 5.6e-75 252.0 0.2 7.5e-75 251.6 0.1 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|529078694|ref|YP_008377697.1| - 5e-39 133.2 1.4 8.2e-39 132.5 0.2 2.0 2 0 0 2 2 2 1 Enolase, N-terminal domain MR_MLE PF01188.16 gi|529078694|ref|YP_008377697.1| - 0.00027 21.3 0.1 0.00062 20.2 0.1 1.7 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_C PF13378.1 gi|529078694|ref|YP_008377697.1| - 0.0015 18.4 0.1 0.0059 16.5 0.0 2.0 2 0 0 2 2 2 1 Enolase C-terminal domain-like MAAL_C PF07476.6 gi|529078694|ref|YP_008377697.1| - 0.0016 17.3 1.1 0.002 17.1 0.0 1.6 2 0 0 2 2 2 1 Methylaspartate ammonia-lyase C-terminus RNA_pol_Rpb6 PF01192.17 gi|529078695|ref|YP_008377698.1| - 2.4e-18 65.5 0.1 2.6e-18 65.4 0.1 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb6 RNA_pol_N PF01194.12 gi|529078696|ref|YP_008377699.1| - 1.9e-17 63.0 0.0 2e-17 62.9 0.0 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Ribosomal_S9 PF00380.14 gi|529078697|ref|YP_008377700.1| - 4e-28 98.1 0.0 4.4e-28 97.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.13 gi|529078698|ref|YP_008377701.1| - 6.9e-21 74.6 0.0 8.8e-21 74.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L13 Ribosomal_L18e PF00828.14 gi|529078699|ref|YP_008377702.1| - 5.8e-13 49.3 0.1 6.9e-13 49.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 BPS PF08947.5 gi|529078699|ref|YP_008377702.1| - 0.095 12.3 0.1 0.22 11.1 0.0 1.6 1 0 0 1 1 1 0 BPS (Between PH and SH2) RNA_pol_A_bac PF01000.21 gi|529078700|ref|YP_008377703.1| - 2.2e-19 69.6 0.0 7.8e-18 64.6 0.0 2.7 2 1 0 2 2 2 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|529078700|ref|YP_008377703.1| - 8e-11 40.9 0.0 1e-10 40.5 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Ribosomal_S11 PF00411.14 gi|529078701|ref|YP_008377704.1| - 9.2e-44 148.1 0.3 1.2e-43 147.7 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 S4 PF01479.20 gi|529078702|ref|YP_008377705.1| - 1.1e-15 56.7 0.2 1.2e-14 53.4 0.0 2.2 2 0 0 2 2 2 1 S4 domain Ribosomal_S4 PF00163.14 gi|529078702|ref|YP_008377705.1| - 0.0011 19.3 0.5 0.0027 18.0 0.1 1.8 2 0 0 2 2 2 1 Ribosomal protein S4/S9 N-terminal domain S4_2 PF13275.1 gi|529078702|ref|YP_008377705.1| - 0.045 13.3 0.0 0.091 12.3 0.0 1.5 1 0 0 1 1 1 0 S4 domain Ribosomal_S13 PF00416.17 gi|529078703|ref|YP_008377706.1| - 5.6e-35 120.0 2.0 7.1e-35 119.6 1.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 FbpA PF05833.6 gi|529078703|ref|YP_008377706.1| - 0.0022 16.6 0.0 0.0022 16.6 0.0 1.2 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF1098 PF06497.6 gi|529078703|ref|YP_008377706.1| - 0.057 13.4 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1098) adh_short PF00106.20 gi|529078705|ref|YP_008377708.1| - 1.6e-30 106.2 1.5 2.5e-30 105.5 1.0 1.3 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|529078705|ref|YP_008377708.1| - 1.2e-12 47.9 0.1 4.8e-09 36.1 0.0 2.2 2 0 0 2 2 2 2 KR domain adh_short_C2 PF13561.1 gi|529078705|ref|YP_008377708.1| - 2.2e-10 40.7 0.0 2.9e-10 40.3 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase NAD_binding_10 PF13460.1 gi|529078705|ref|YP_008377708.1| - 3.2e-06 27.2 0.6 1.2e-05 25.4 0.4 1.9 1 1 0 1 1 1 1 NADH(P)-binding Eno-Rase_NADH_b PF12242.3 gi|529078705|ref|YP_008377708.1| - 0.0018 18.0 0.1 0.0043 16.8 0.1 1.6 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase RmlD_sub_bind PF04321.12 gi|529078705|ref|YP_008377708.1| - 0.0028 16.5 0.0 0.0037 16.2 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.16 gi|529078705|ref|YP_008377708.1| - 0.0037 16.7 0.1 0.0059 16.0 0.0 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family DNA_pol_lambd_f PF10391.4 gi|529078705|ref|YP_008377708.1| - 0.17 11.4 0.5 0.44 10.1 0.3 1.6 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda ADC PF06314.6 gi|529078706|ref|YP_008377709.1| - 1.8e-21 76.5 0.2 3.1e-21 75.8 0.2 1.3 1 1 0 1 1 1 1 Acetoacetate decarboxylase (ADC) Alpha-amylase PF00128.19 gi|529078707|ref|YP_008377710.1| - 4.3e-29 101.9 0.0 3.1e-27 95.7 0.0 2.4 1 1 0 1 1 1 1 Alpha amylase, catalytic domain DUF1939 PF09154.5 gi|529078707|ref|YP_008377710.1| - 8.5e-13 47.9 0.0 1.8e-12 46.9 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1939) Aminotran_5 PF00266.14 gi|529078707|ref|YP_008377710.1| - 0.2 10.3 0.1 0.3 9.7 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-V ParA PF10609.4 gi|529078708|ref|YP_008377711.1| - 1.3e-35 121.1 0.0 2.2e-35 120.3 0.0 1.4 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|529078708|ref|YP_008377711.1| - 8e-23 80.8 0.0 1.2e-22 80.3 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF59 PF01883.14 gi|529078708|ref|YP_008377711.1| - 1.4e-09 37.7 0.4 3.4e-09 36.5 0.3 1.7 1 0 0 1 1 1 1 Domain of unknown function DUF59 MipZ PF09140.6 gi|529078708|ref|YP_008377711.1| - 5.7e-09 35.4 0.0 1.1e-08 34.5 0.0 1.4 1 0 0 1 1 1 1 ATPase MipZ AAA_31 PF13614.1 gi|529078708|ref|YP_008377711.1| - 5.7e-09 36.0 0.0 2.1e-07 30.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain VirC1 PF07015.6 gi|529078708|ref|YP_008377711.1| - 1.1e-05 24.6 0.0 1.7e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 VirC1 protein ArsA_ATPase PF02374.10 gi|529078708|ref|YP_008377711.1| - 3.4e-05 23.0 2.9 0.00077 18.5 0.5 2.1 2 0 0 2 2 2 1 Anion-transporting ATPase Fer4_NifH PF00142.13 gi|529078708|ref|YP_008377711.1| - 7.3e-05 22.0 0.0 0.0054 15.9 0.0 2.2 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.1 gi|529078708|ref|YP_008377711.1| - 0.00088 18.7 0.0 0.0013 18.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_26 PF13500.1 gi|529078708|ref|YP_008377711.1| - 0.0059 16.2 0.0 2.8 7.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain ArgK PF03308.11 gi|529078708|ref|YP_008377711.1| - 0.038 12.7 0.5 0.063 12.0 0.3 1.2 1 0 0 1 1 1 0 ArgK protein AAA_10 PF12846.2 gi|529078708|ref|YP_008377711.1| - 0.067 12.6 0.0 0.094 12.1 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain APS_kinase PF01583.15 gi|529078708|ref|YP_008377711.1| - 0.069 12.7 0.1 0.15 11.7 0.0 1.5 2 0 0 2 2 1 0 Adenylylsulphate kinase AAA_17 PF13207.1 gi|529078708|ref|YP_008377711.1| - 0.1 13.4 0.0 0.19 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|529078708|ref|YP_008377711.1| - 0.75 9.5 9.8 1.5 8.5 0.7 3.1 3 1 0 3 3 3 0 Part of AAA domain HTH_DeoR PF08220.7 gi|529078709|ref|YP_008377712.1| - 0.009 15.5 0.4 0.014 14.9 0.3 1.3 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain GntR PF00392.16 gi|529078709|ref|YP_008377712.1| - 0.069 12.5 0.2 0.1 12.0 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_20 PF12840.2 gi|529078709|ref|YP_008377712.1| - 0.12 12.2 0.1 0.15 11.8 0.1 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain PIN PF01850.16 gi|529078710|ref|YP_008377713.1| - 7.3e-16 58.6 0.5 8.5e-16 58.3 0.4 1.0 1 0 0 1 1 1 1 PIN domain tRNA-synt_1b PF00579.20 gi|529078711|ref|YP_008377714.1| - 1e-55 188.9 0.0 1.3e-55 188.5 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) Arginase PF00491.16 gi|529078711|ref|YP_008377714.1| - 0.061 12.6 0.4 0.092 12.0 0.3 1.2 1 0 0 1 1 1 0 Arginase family Methyltransf_11 PF08241.7 gi|529078712|ref|YP_008377715.1| - 6.3e-19 68.2 0.1 1e-18 67.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|529078712|ref|YP_008377715.1| - 3.2e-13 49.8 0.2 8.5e-13 48.5 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|529078712|ref|YP_008377715.1| - 3.5e-11 42.9 0.0 4.7e-11 42.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|529078712|ref|YP_008377715.1| - 1e-10 41.9 0.1 2.4e-10 40.7 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|529078712|ref|YP_008377715.1| - 7.9e-09 36.0 0.1 1.2e-08 35.5 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|529078712|ref|YP_008377715.1| - 1.1e-08 35.0 0.0 1.3e-08 34.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|529078712|ref|YP_008377715.1| - 1.2e-05 25.3 0.5 2.2e-05 24.4 0.3 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|529078712|ref|YP_008377715.1| - 1.7e-05 24.0 0.0 2.3e-05 23.6 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_8 PF05148.10 gi|529078712|ref|YP_008377715.1| - 0.0013 18.3 0.0 0.0019 17.9 0.0 1.2 1 0 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_9 PF08003.6 gi|529078712|ref|YP_008377715.1| - 0.0029 16.3 0.0 0.0036 16.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_4 PF02390.12 gi|529078712|ref|YP_008377715.1| - 0.0031 16.6 0.0 0.0067 15.4 0.0 1.6 2 1 0 2 2 2 1 Putative methyltransferase NodS PF05401.6 gi|529078712|ref|YP_008377715.1| - 0.004 16.5 0.0 0.0051 16.2 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_17 PF12692.2 gi|529078712|ref|YP_008377715.1| - 0.0063 16.2 0.3 0.11 12.2 0.0 2.1 1 1 1 2 2 2 1 S-adenosyl-L-methionine methyltransferase TPMT PF05724.6 gi|529078712|ref|YP_008377715.1| - 0.026 13.9 0.0 0.038 13.4 0.0 1.2 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) AdoMet_MTase PF07757.8 gi|529078712|ref|YP_008377715.1| - 0.042 13.9 0.1 0.7 10.0 0.0 2.2 1 1 1 2 2 2 0 Predicted AdoMet-dependent methyltransferase MetW PF07021.7 gi|529078712|ref|YP_008377715.1| - 0.056 12.8 0.0 0.068 12.5 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW RrnaAD PF00398.15 gi|529078712|ref|YP_008377715.1| - 0.089 11.7 0.0 0.12 11.4 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase TehB PF03848.9 gi|529078712|ref|YP_008377715.1| - 0.11 11.6 0.0 0.13 11.4 0.0 1.4 1 1 0 1 1 1 0 Tellurite resistance protein TehB PCMT PF01135.14 gi|529078712|ref|YP_008377715.1| - 0.12 11.8 0.0 0.19 11.2 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|529078712|ref|YP_008377715.1| - 0.15 11.4 0.0 0.2 11.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain PemK PF02452.12 gi|529078713|ref|YP_008377716.1| - 6.8e-09 35.9 0.0 7.7e-09 35.7 0.0 1.1 1 0 0 1 1 1 1 PemK-like protein MarR_2 PF12802.2 gi|529078714|ref|YP_008377717.1| - 5.4e-07 29.1 0.1 1e-06 28.2 0.0 1.4 2 0 0 2 2 2 1 MarR family TrmB PF01978.14 gi|529078714|ref|YP_008377717.1| - 8.6e-06 25.3 0.0 1.5e-05 24.5 0.0 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|529078714|ref|YP_008377717.1| - 7.5e-05 22.4 0.1 0.00016 21.3 0.0 1.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|529078714|ref|YP_008377717.1| - 0.00019 20.9 0.0 0.00029 20.3 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain Rrf2 PF02082.15 gi|529078714|ref|YP_008377717.1| - 0.00061 19.8 0.0 0.0011 19.0 0.0 1.4 2 0 0 2 2 2 1 Transcriptional regulator Fe_dep_repress PF01325.14 gi|529078714|ref|YP_008377717.1| - 0.00074 19.4 0.0 0.0011 18.8 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.1 gi|529078714|ref|YP_008377717.1| - 0.0061 15.9 0.0 0.0099 15.2 0.0 1.4 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.1 gi|529078714|ref|YP_008377717.1| - 0.0064 16.1 0.0 0.01 15.4 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_27 PF13463.1 gi|529078714|ref|YP_008377717.1| - 0.01 16.1 0.0 0.018 15.3 0.0 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain DUF4423 PF14394.1 gi|529078714|ref|YP_008377717.1| - 0.013 15.0 0.0 0.016 14.7 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HemN_C PF06969.11 gi|529078714|ref|YP_008377717.1| - 0.091 12.8 0.0 0.2 11.7 0.0 1.5 2 0 0 2 2 1 0 HemN C-terminal domain DUF2250 PF10007.4 gi|529078714|ref|YP_008377717.1| - 0.091 12.6 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_11 PF08279.7 gi|529078714|ref|YP_008377717.1| - 0.094 12.3 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 HTH domain Sigma70_r4_2 PF08281.7 gi|529078714|ref|YP_008377717.1| - 0.12 11.9 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 Sulfolobus_pRN PF05584.6 gi|529078714|ref|YP_008377717.1| - 0.15 12.0 0.0 0.2 11.6 0.0 1.2 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein SUI1 PF01253.17 gi|529078715|ref|YP_008377718.1| - 5e-25 87.1 0.0 5.7e-25 86.9 0.0 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.9 gi|529078715|ref|YP_008377718.1| - 0.018 15.2 0.0 0.023 14.8 0.0 1.4 1 1 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) DTW PF03942.10 gi|529078715|ref|YP_008377718.1| - 0.071 12.3 0.6 0.085 12.0 0.4 1.1 1 0 0 1 1 1 0 DTW domain DUF2631 PF10939.3 gi|529078715|ref|YP_008377718.1| - 0.11 12.2 0.0 0.25 11.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2631) Transglut_core PF01841.14 gi|529078716|ref|YP_008377719.1| - 5.6e-29 100.6 0.2 1.3e-28 99.4 0.1 1.6 1 0 0 1 1 1 1 Transglutaminase-like superfamily Transglut_core3 PF13471.1 gi|529078716|ref|YP_008377719.1| - 2.9e-05 23.8 0.2 0.00057 19.6 0.0 2.6 2 0 0 2 2 2 1 Transglutaminase-like superfamily DUF4129 PF13559.1 gi|529078716|ref|YP_008377719.1| - 0.004 17.0 9.2 0.004 17.0 6.4 2.6 3 0 0 3 3 3 1 Domain of unknown function (DUF4129) DUF58 PF01882.13 gi|529078717|ref|YP_008377720.1| - 9.1e-14 51.3 0.2 2.8e-13 49.7 0.2 1.9 2 0 0 2 2 2 1 Protein of unknown function DUF58 FlgD_ig PF13860.1 gi|529078717|ref|YP_008377720.1| - 0.07 12.8 0.2 2.1 8.1 0.0 2.8 2 0 0 2 2 2 0 FlgD Ig-like domain BTP PF05232.7 gi|529078717|ref|YP_008377720.1| - 3.7 7.3 5.5 8.5 6.2 3.8 1.5 1 0 0 1 1 1 0 Bacterial Transmembrane Pair family AAA_3 PF07726.6 gi|529078718|ref|YP_008377721.1| - 1.7e-61 205.5 0.0 3e-61 204.8 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|529078718|ref|YP_008377721.1| - 1.6e-14 53.7 0.0 5.2e-14 52.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|529078718|ref|YP_008377721.1| - 1e-06 29.0 0.0 1.5e-06 28.4 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|529078718|ref|YP_008377721.1| - 2.3e-05 23.9 0.0 0.00039 19.9 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|529078718|ref|YP_008377721.1| - 9.3e-05 21.6 0.0 0.0091 15.1 0.0 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI MCM PF00493.18 gi|529078718|ref|YP_008377721.1| - 0.00022 20.1 0.0 0.0022 16.8 0.0 2.4 1 1 0 2 2 2 1 MCM2/3/5 family RuvB_N PF05496.7 gi|529078718|ref|YP_008377721.1| - 0.00037 19.6 0.0 0.0026 16.8 0.0 2.0 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|529078718|ref|YP_008377721.1| - 0.0077 16.1 0.0 0.019 14.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) POR PF01558.13 gi|529078718|ref|YP_008377721.1| - 0.13 12.1 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 Pyruvate ferredoxin/flavodoxin oxidoreductase AAA_22 PF13401.1 gi|529078718|ref|YP_008377721.1| - 0.14 12.3 0.0 0.32 11.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain Aminotran_1_2 PF00155.16 gi|529078719|ref|YP_008377722.1| - 1.9e-60 204.7 0.0 2.1e-60 204.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|529078719|ref|YP_008377722.1| - 3.6e-17 62.4 0.4 5.5e-17 61.8 0.3 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|529078719|ref|YP_008377722.1| - 1.5e-11 43.9 0.2 6.5e-11 41.9 0.0 1.9 2 0 0 2 2 2 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|529078719|ref|YP_008377722.1| - 2.6e-07 29.2 0.0 3.7e-07 28.7 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|529078719|ref|YP_008377722.1| - 1.4e-06 27.3 0.0 1.9e-06 26.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_3 PF00202.16 gi|529078719|ref|YP_008377722.1| - 0.092 11.5 0.2 0.17 10.6 0.0 1.4 2 0 0 2 2 2 0 Aminotransferase class-III MatE PF01554.13 gi|529078720|ref|YP_008377723.1| - 1.6e-60 203.4 34.8 1.3e-34 119.1 6.9 3.2 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|529078720|ref|YP_008377723.1| - 3.6e-05 23.5 8.6 3.6e-05 23.5 5.9 5.0 3 2 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Citrate_synt PF00285.16 gi|529078721|ref|YP_008377724.1| - 4.8e-111 370.9 0.0 5.4e-111 370.7 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase Peripla_BP_2 PF01497.13 gi|529078722|ref|YP_008377725.1| - 8.6e-21 74.1 0.0 1.1e-20 73.7 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_2 PF01497.13 gi|529078723|ref|YP_008377726.1| - 1e-12 47.6 0.0 1.5e-12 47.1 0.0 1.4 1 0 0 1 1 1 1 Periplasmic binding protein FAD_binding_2 PF00890.19 gi|529078724|ref|YP_008377727.1| - 1.9e-06 27.0 1.4 4.7e-06 25.7 1.0 1.9 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|529078724|ref|YP_008377727.1| - 2.2e-06 27.6 0.1 4.1e-06 26.8 0.1 1.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|529078724|ref|YP_008377727.1| - 5.5e-06 26.3 0.2 1.4e-05 25.0 0.2 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|529078724|ref|YP_008377727.1| - 8.8e-06 25.0 0.2 2.4e-05 23.5 0.1 1.8 1 1 1 2 2 2 1 FAD binding domain DAO PF01266.19 gi|529078724|ref|YP_008377727.1| - 7e-05 21.8 6.4 0.00017 20.6 0.2 2.7 2 1 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|529078724|ref|YP_008377727.1| - 8.3e-05 21.6 0.2 0.00014 20.8 0.1 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|529078724|ref|YP_008377727.1| - 0.00079 18.6 2.5 0.00087 18.4 0.8 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|529078724|ref|YP_008377727.1| - 0.0018 17.4 0.2 0.003 16.6 0.1 1.3 1 0 0 1 1 1 1 Thi4 family HI0933_like PF03486.9 gi|529078724|ref|YP_008377727.1| - 0.0085 14.6 0.1 0.014 13.9 0.0 1.3 1 0 0 1 1 1 1 HI0933-like protein FecCD PF01032.13 gi|529078725|ref|YP_008377728.1| - 4.2e-88 295.1 39.3 5.9e-88 294.6 27.2 1.3 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|529078725|ref|YP_008377728.1| - 0.0022 17.3 15.0 0.0022 17.3 10.4 2.4 2 1 0 3 3 3 1 ABC 3 transport family RhodobacterPufX PF11511.3 gi|529078725|ref|YP_008377728.1| - 0.19 11.1 0.0 0.19 11.1 0.0 3.4 4 0 0 4 4 4 0 Intrinsic membrane protein PufX ABC_tran PF00005.22 gi|529078726|ref|YP_008377729.1| - 3.9e-31 108.1 0.0 5.2e-31 107.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|529078726|ref|YP_008377729.1| - 2.7e-11 43.9 1.4 1.2e-05 25.4 0.3 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|529078726|ref|YP_008377729.1| - 1.8e-10 40.4 0.0 4.6e-05 22.7 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|529078726|ref|YP_008377729.1| - 1.8e-09 37.2 0.1 6.2e-08 32.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|529078726|ref|YP_008377729.1| - 1.7e-06 27.4 0.0 3.4e-06 26.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|529078726|ref|YP_008377729.1| - 5.3e-06 26.6 0.9 4.7e-05 23.5 0.6 2.1 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|529078726|ref|YP_008377729.1| - 0.0002 22.1 0.4 0.00056 20.7 0.2 1.9 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|529078726|ref|YP_008377729.1| - 0.00021 21.6 0.0 0.00034 21.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|529078726|ref|YP_008377729.1| - 0.00029 20.0 0.1 0.34 9.8 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.1 gi|529078726|ref|YP_008377729.1| - 0.0003 20.8 2.5 0.0012 18.8 1.7 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.1 gi|529078726|ref|YP_008377729.1| - 0.00043 20.1 0.1 0.00089 19.1 0.1 1.8 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|529078726|ref|YP_008377729.1| - 0.00078 19.1 0.2 0.0016 18.0 0.0 1.6 2 0 0 2 2 2 1 NACHT domain ABC_ATPase PF09818.4 gi|529078726|ref|YP_008377729.1| - 0.00085 18.0 0.3 0.16 10.5 0.0 2.7 2 1 0 2 2 2 1 Predicted ATPase of the ABC class DUF258 PF03193.11 gi|529078726|ref|YP_008377729.1| - 0.0031 16.7 0.0 0.0058 15.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 UPF0079 PF02367.12 gi|529078726|ref|YP_008377729.1| - 0.0034 17.0 0.1 0.0063 16.1 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_10 PF12846.2 gi|529078726|ref|YP_008377729.1| - 0.0062 16.0 0.2 0.015 14.7 0.0 1.6 1 1 1 2 2 2 1 AAA-like domain AAA_14 PF13173.1 gi|529078726|ref|YP_008377729.1| - 0.014 15.3 0.0 0.031 14.1 0.0 1.6 2 0 0 2 2 1 0 AAA domain AAA PF00004.24 gi|529078726|ref|YP_008377729.1| - 0.018 15.2 0.0 0.064 13.4 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.1 gi|529078726|ref|YP_008377729.1| - 0.022 14.7 0.0 0.043 13.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|529078726|ref|YP_008377729.1| - 0.028 14.1 0.0 0.066 12.9 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B SbcCD_C PF13558.1 gi|529078726|ref|YP_008377729.1| - 0.033 14.1 0.2 0.58 10.1 0.1 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_24 PF13479.1 gi|529078726|ref|YP_008377729.1| - 0.039 13.5 0.0 0.059 12.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|529078726|ref|YP_008377729.1| - 0.041 14.1 0.6 0.086 13.1 0.4 1.5 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|529078726|ref|YP_008377729.1| - 0.046 13.4 0.1 0.11 12.2 0.1 1.7 1 0 0 1 1 1 0 Part of AAA domain HD PF01966.17 gi|529078726|ref|YP_008377729.1| - 0.076 13.0 0.6 1.2 9.1 0.1 2.2 2 0 0 2 2 2 0 HD domain SRP54 PF00448.17 gi|529078726|ref|YP_008377729.1| - 0.081 12.3 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain RNA_helicase PF00910.17 gi|529078726|ref|YP_008377729.1| - 0.094 12.8 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 RNA helicase APS_kinase PF01583.15 gi|529078726|ref|YP_008377729.1| - 0.099 12.2 0.1 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_5 PF07728.9 gi|529078726|ref|YP_008377729.1| - 0.1 12.3 0.1 0.32 10.7 0.1 2.0 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) MMR_HSR1 PF01926.18 gi|529078726|ref|YP_008377729.1| - 0.12 12.3 0.0 0.34 10.8 0.0 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase Thymidylate_kin PF02223.12 gi|529078726|ref|YP_008377729.1| - 0.15 11.4 0.0 0.25 10.7 0.0 1.3 1 0 0 1 1 1 0 Thymidylate kinase DUF2813 PF11398.3 gi|529078726|ref|YP_008377729.1| - 0.15 11.1 0.0 0.25 10.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) Lactamase_B_2 PF12706.2 gi|529078727|ref|YP_008377730.1| - 6.4e-14 51.9 0.2 8.4e-14 51.5 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|529078727|ref|YP_008377730.1| - 3.1e-10 39.9 0.2 4.5e-10 39.4 0.1 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|529078727|ref|YP_008377730.1| - 0.014 15.0 7.9 0.11 12.1 5.5 2.3 1 1 0 1 1 1 0 Metallo-beta-lactamase superfamily CENP-F_leu_zip PF10473.4 gi|529078728|ref|YP_008377731.1| - 1.4e-06 28.1 17.0 0.00012 21.9 2.0 2.4 1 1 2 3 3 3 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 FlaC_arch PF05377.6 gi|529078728|ref|YP_008377731.1| - 7e-06 25.8 5.6 0.07 13.0 0.0 4.0 4 0 0 4 4 4 2 Flagella accessory protein C (FlaC) DUF869 PF05911.6 gi|529078728|ref|YP_008377731.1| - 1e-05 24.0 1.3 1.8e-05 23.2 0.9 1.4 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) NPV_P10 PF05531.7 gi|529078728|ref|YP_008377731.1| - 1.3e-05 25.3 0.8 0.099 12.8 0.1 3.7 1 1 2 3 3 3 1 Nucleopolyhedrovirus P10 protein IncA PF04156.9 gi|529078728|ref|YP_008377731.1| - 2.7e-05 23.8 7.1 0.00056 19.5 4.9 2.1 1 1 0 1 1 1 1 IncA protein BLOC1_2 PF10046.4 gi|529078728|ref|YP_008377731.1| - 5e-05 23.3 4.1 0.19 11.8 0.2 3.2 1 1 1 2 2 2 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 Reo_sigmaC PF04582.7 gi|529078728|ref|YP_008377731.1| - 5.8e-05 22.4 2.8 0.00042 19.6 1.6 1.9 1 1 1 2 2 2 1 Reovirus sigma C capsid protein Cast PF10174.4 gi|529078728|ref|YP_008377731.1| - 6.7e-05 21.1 3.8 9.7e-05 20.6 2.6 1.2 1 0 0 1 1 1 1 RIM-binding protein of the cytomatrix active zone Gp58 PF07902.6 gi|529078728|ref|YP_008377731.1| - 7.8e-05 21.0 0.8 0.00011 20.6 0.5 1.1 1 0 0 1 1 1 1 gp58-like protein bZIP_1 PF00170.16 gi|529078728|ref|YP_008377731.1| - 8.6e-05 22.4 0.6 0.88 9.5 0.0 3.9 4 0 0 4 4 4 1 bZIP transcription factor Baculo_PEP_C PF04513.7 gi|529078728|ref|YP_008377731.1| - 0.00011 22.1 0.1 0.16 11.7 0.0 2.4 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus WEMBL PF05701.6 gi|529078728|ref|YP_008377731.1| - 0.00014 20.5 4.0 0.00023 19.7 2.8 1.3 1 0 0 1 1 1 1 Weak chloroplast movement under blue light Filament PF00038.16 gi|529078728|ref|YP_008377731.1| - 0.00017 21.1 2.5 0.12 11.7 0.3 2.0 1 1 1 2 2 2 2 Intermediate filament protein MCPsignal PF00015.16 gi|529078728|ref|YP_008377731.1| - 0.0002 20.9 0.4 0.00034 20.2 0.3 1.4 1 0 0 1 1 1 1 Methyl-accepting chemotaxis protein (MCP) signalling domain Spc7 PF08317.6 gi|529078728|ref|YP_008377731.1| - 0.00028 19.6 1.2 0.00094 17.9 0.9 1.8 1 1 0 1 1 1 1 Spc7 kinetochore protein ATG16 PF08614.6 gi|529078728|ref|YP_008377731.1| - 0.00034 20.4 1.7 0.00061 19.6 0.3 1.8 1 1 1 2 2 2 1 Autophagy protein 16 (ATG16) TBPIP PF07106.8 gi|529078728|ref|YP_008377731.1| - 0.00043 19.8 1.0 0.25 10.8 0.5 2.2 1 1 1 2 2 2 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) COG2 PF06148.6 gi|529078728|ref|YP_008377731.1| - 0.00055 19.8 5.2 0.14 12.0 0.7 3.2 1 1 1 2 2 2 1 COG (conserved oligomeric Golgi) complex component, COG2 AAA_13 PF13166.1 gi|529078728|ref|YP_008377731.1| - 0.00069 18.2 0.0 0.00096 17.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain Laminin_II PF06009.7 gi|529078728|ref|YP_008377731.1| - 0.0014 18.3 0.3 0.0045 16.7 0.2 1.9 1 1 0 1 1 1 1 Laminin Domain II CALCOCO1 PF07888.6 gi|529078728|ref|YP_008377731.1| - 0.0016 16.8 1.1 0.0024 16.2 0.8 1.3 1 0 0 1 1 1 1 Calcium binding and coiled-coil domain (CALCOCO1) like PilJ PF13675.1 gi|529078728|ref|YP_008377731.1| - 0.002 18.4 0.7 2.4 8.4 0.1 3.2 2 1 1 3 3 3 0 Type IV pili methyl-accepting chemotaxis transducer N-term Spectrin PF00435.16 gi|529078728|ref|YP_008377731.1| - 0.002 18.3 1.8 0.0064 16.7 0.2 2.2 1 1 1 2 2 2 1 Spectrin repeat NIT PF08376.5 gi|529078728|ref|YP_008377731.1| - 0.0022 17.5 2.5 0.071 12.6 0.1 2.5 1 1 2 3 3 3 1 Nitrate and nitrite sensing DUF1664 PF07889.7 gi|529078728|ref|YP_008377731.1| - 0.0022 17.7 3.9 0.0079 15.9 0.1 3.1 2 1 1 3 3 2 1 Protein of unknown function (DUF1664) EzrA PF06160.7 gi|529078728|ref|YP_008377731.1| - 0.0025 16.0 1.9 0.0043 15.3 1.3 1.4 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA Med9 PF07544.8 gi|529078728|ref|YP_008377731.1| - 0.0028 17.3 2.2 0.037 13.7 0.2 2.7 1 1 1 2 2 2 1 RNA polymerase II transcription mediator complex subunit 9 Myosin_tail_1 PF01576.14 gi|529078728|ref|YP_008377731.1| - 0.0044 14.8 6.3 0.0096 13.7 4.4 1.3 1 1 0 1 1 1 1 Myosin tail DUF4164 PF13747.1 gi|529078728|ref|YP_008377731.1| - 0.005 16.9 6.2 0.021 14.9 0.7 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4164) Prefoldin_2 PF01920.15 gi|529078728|ref|YP_008377731.1| - 0.0069 16.1 2.9 2.3 8.0 0.0 3.8 1 1 3 4 4 4 0 Prefoldin subunit TMF_TATA_bd PF12325.3 gi|529078728|ref|YP_008377731.1| - 0.0094 15.6 7.0 0.036 13.7 1.9 2.3 1 1 1 2 2 2 1 TATA element modulatory factor 1 TATA binding DivIC PF04977.10 gi|529078728|ref|YP_008377731.1| - 0.012 15.0 0.3 9 5.8 0.0 3.3 2 1 1 3 3 3 0 Septum formation initiator DUF3450 PF11932.3 gi|529078728|ref|YP_008377731.1| - 0.012 14.8 0.2 0.096 11.9 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) Sec34 PF04136.10 gi|529078728|ref|YP_008377731.1| - 0.012 15.2 1.3 0.84 9.3 0.3 2.3 1 1 1 2 2 2 0 Sec34-like family DUF948 PF06103.6 gi|529078728|ref|YP_008377731.1| - 0.013 15.2 0.2 0.34 10.7 0.2 2.7 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) APG6 PF04111.7 gi|529078728|ref|YP_008377731.1| - 0.016 14.2 2.6 0.027 13.5 0.6 1.7 1 1 0 1 1 1 0 Autophagy protein Apg6 DUF4559 PF15112.1 gi|529078728|ref|YP_008377731.1| - 0.02 14.0 0.5 0.029 13.5 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4559) DUF3584 PF12128.3 gi|529078728|ref|YP_008377731.1| - 0.021 12.1 3.3 0.028 11.7 2.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Mod_r PF07200.8 gi|529078728|ref|YP_008377731.1| - 0.027 14.3 1.9 4.7 7.1 0.0 2.6 2 1 1 3 3 2 0 Modifier of rudimentary (Mod(r)) protein DUF812 PF05667.6 gi|529078728|ref|YP_008377731.1| - 0.031 12.8 1.2 0.09 11.2 0.9 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF812) Tropomyosin_1 PF12718.2 gi|529078728|ref|YP_008377731.1| - 0.031 14.1 7.6 0.091 12.6 2.3 2.3 1 1 1 2 2 2 0 Tropomyosin like Phage_GP20 PF06810.6 gi|529078728|ref|YP_008377731.1| - 0.033 13.6 3.1 0.21 10.9 0.9 2.8 1 1 2 3 3 3 0 Phage minor structural protein GP20 ALIX_LYPXL_bnd PF13949.1 gi|529078728|ref|YP_008377731.1| - 0.036 13.0 5.1 0.12 11.3 3.5 1.8 1 1 0 1 1 1 0 ALIX V-shaped domain binding to HIV Seryl_tRNA_N PF02403.17 gi|529078728|ref|YP_008377731.1| - 0.039 13.9 1.0 3.6 7.6 0.0 3.0 1 1 1 3 3 3 0 Seryl-tRNA synthetase N-terminal domain HrpB7 PF09486.5 gi|529078728|ref|YP_008377731.1| - 0.041 13.8 0.3 0.7 9.8 0.0 2.7 1 1 1 2 2 2 0 Bacterial type III secretion protein (HrpB7) HAUS5 PF14817.1 gi|529078728|ref|YP_008377731.1| - 0.058 11.9 0.3 0.074 11.5 0.2 1.2 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 5 DASH_Duo1 PF08651.5 gi|529078728|ref|YP_008377731.1| - 0.061 12.8 0.1 8.6 6.0 0.0 2.8 2 1 1 3 3 2 0 DASH complex subunit Duo1 TMF_DNA_bd PF12329.3 gi|529078728|ref|YP_008377731.1| - 0.063 13.0 8.6 0.36 10.6 0.1 3.6 1 1 2 3 3 3 0 TATA element modulatory factor 1 DNA binding PspA_IM30 PF04012.7 gi|529078728|ref|YP_008377731.1| - 0.066 12.5 0.3 3.7 6.8 0.0 2.3 1 1 1 2 2 2 0 PspA/IM30 family MscS_porin PF12795.2 gi|529078728|ref|YP_008377731.1| - 0.079 12.2 0.0 0.21 10.9 0.0 1.7 1 1 0 1 1 1 0 Mechanosensitive ion channel porin domain Osmo_CC PF08946.5 gi|529078728|ref|YP_008377731.1| - 0.083 12.9 2.6 4 7.5 0.2 3.3 3 0 0 3 3 3 0 Osmosensory transporter coiled coil Tropomyosin PF00261.15 gi|529078728|ref|YP_008377731.1| - 0.085 11.9 4.1 0.087 11.8 1.6 1.9 1 1 0 1 1 1 0 Tropomyosin RmuC PF02646.11 gi|529078728|ref|YP_008377731.1| - 0.091 11.5 1.1 12 4.6 0.0 2.7 1 1 2 3 3 3 0 RmuC family MAD PF05557.8 gi|529078728|ref|YP_008377731.1| - 0.091 10.8 2.8 0.098 10.7 1.0 1.5 1 1 0 1 1 1 0 Mitotic checkpoint protein MerR-DNA-bind PF09278.6 gi|529078728|ref|YP_008377731.1| - 0.1 12.9 2.7 4.4 7.7 0.4 3.4 3 1 1 4 4 3 0 MerR, DNA binding CENP-Q PF13094.1 gi|529078728|ref|YP_008377731.1| - 0.13 12.3 2.4 0.26 11.2 1.6 1.6 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit FH2 PF02181.18 gi|529078728|ref|YP_008377731.1| - 0.13 11.1 1.4 2.8 6.7 0.1 2.1 1 1 1 2 2 2 0 Formin Homology 2 Domain Syntaxin PF00804.20 gi|529078728|ref|YP_008377731.1| - 0.14 12.3 3.7 0.89 9.7 1.0 2.9 1 1 1 2 2 2 0 Syntaxin DUF16 PF01519.11 gi|529078728|ref|YP_008377731.1| - 0.15 12.2 1.0 0.51 10.5 0.4 2.1 1 1 1 2 2 2 0 Protein of unknown function DUF16 Cep57_CLD_2 PF14197.1 gi|529078728|ref|YP_008377731.1| - 0.17 11.8 7.7 0.045 13.6 1.5 2.8 3 0 0 3 3 2 0 Centrosome localisation domain of PPC89 DUF972 PF06156.8 gi|529078728|ref|YP_008377731.1| - 0.18 12.1 2.1 1.2 9.4 0.3 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF972) TPR_MLP1_2 PF07926.7 gi|529078728|ref|YP_008377731.1| - 0.19 11.4 1.3 0.47 10.1 0.4 2.0 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein GAS PF13851.1 gi|529078728|ref|YP_008377731.1| - 0.2 10.8 0.5 2.8 7.0 0.1 2.0 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding DUF2730 PF10805.3 gi|529078728|ref|YP_008377731.1| - 0.22 11.2 1.7 1.4 8.6 0.2 2.7 2 1 1 3 3 2 0 Protein of unknown function (DUF2730) SlyX PF04102.7 gi|529078728|ref|YP_008377731.1| - 0.32 11.3 6.5 5.5 7.4 0.9 3.8 1 1 2 3 3 3 0 SlyX V-SNARE PF05008.10 gi|529078728|ref|YP_008377731.1| - 0.38 10.9 2.8 8.7 6.5 0.9 2.8 1 1 1 2 2 2 0 Vesicle transport v-SNARE protein N-terminus V_ATPase_I PF01496.14 gi|529078728|ref|YP_008377731.1| - 0.46 8.2 1.9 1.8 6.3 1.4 1.7 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family Rep_4 PF05797.6 gi|529078728|ref|YP_008377731.1| - 0.61 8.7 3.7 0.15 10.7 0.2 1.7 2 0 0 2 2 2 0 Yeast trans-acting factor (REP1/REP2) zf-C4H2 PF10146.4 gi|529078728|ref|YP_008377731.1| - 0.61 10.0 2.2 1.1 9.2 1.5 1.4 1 0 0 1 1 1 0 Zinc finger-containing protein Hemerythrin PF01814.18 gi|529078728|ref|YP_008377731.1| - 0.75 9.9 4.6 65 3.6 3.1 2.5 1 1 0 1 1 1 0 Hemerythrin HHE cation binding domain Nsp1_C PF05064.8 gi|529078728|ref|YP_008377731.1| - 0.78 9.4 6.1 0.44 10.2 0.9 2.8 2 1 1 3 3 2 0 Nsp1-like C-terminal region CorA PF01544.13 gi|529078728|ref|YP_008377731.1| - 0.99 8.3 3.6 0.49 9.3 0.8 1.8 2 1 0 2 2 1 0 CorA-like Mg2+ transporter protein CCDC155 PF14662.1 gi|529078728|ref|YP_008377731.1| - 1.2 8.7 6.4 5 6.6 4.4 1.9 1 1 0 1 1 1 0 Coiled-coil region of CCDC155 Syntaxin-6_N PF09177.6 gi|529078728|ref|YP_008377731.1| - 1.3 9.4 4.6 5 7.5 1.7 2.7 1 1 2 3 3 3 0 Syntaxin 6, N-terminal DUF848 PF05852.6 gi|529078728|ref|YP_008377731.1| - 4 7.2 12.4 0.61 9.9 3.2 2.5 2 1 1 3 3 2 0 Gammaherpesvirus protein of unknown function (DUF848) ERM PF00769.14 gi|529078728|ref|YP_008377731.1| - 7.4 6.0 6.9 2.5 7.5 2.4 1.8 2 0 0 2 2 2 0 Ezrin/radixin/moesin family GST_N_2 PF13409.1 gi|529078729|ref|YP_008377732.1| - 5.5e-23 80.7 0.3 3.8e-22 78.0 0.0 2.1 2 0 0 2 2 2 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.1 gi|529078729|ref|YP_008377732.1| - 5e-14 51.9 1.3 1e-13 50.9 0.9 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_3 PF14497.1 gi|529078729|ref|YP_008377732.1| - 2.8e-09 37.3 0.1 5.1e-09 36.4 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_3 PF13417.1 gi|529078729|ref|YP_008377732.1| - 1.3e-07 31.7 0.0 3.8e-06 27.0 0.0 2.5 1 1 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C PF00043.20 gi|529078729|ref|YP_008377732.1| - 3e-07 30.3 0.1 6.6e-07 29.2 0.0 1.7 2 0 0 2 2 2 1 Glutathione S-transferase, C-terminal domain Ribosomal_L16 PF00252.13 gi|529078730|ref|YP_008377733.1| - 3.6e-29 101.1 0.0 4.3e-29 100.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e RimK PF08443.6 gi|529078731|ref|YP_008377734.1| - 7.3e-25 87.5 0.0 9.8e-25 87.1 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|529078731|ref|YP_008377734.1| - 6.2e-15 55.4 0.0 9e-15 54.8 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.11 gi|529078731|ref|YP_008377734.1| - 1.6e-12 46.9 0.0 2.3e-12 46.3 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.9 gi|529078731|ref|YP_008377734.1| - 4.4e-09 36.3 0.0 6.7e-09 35.8 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|529078731|ref|YP_008377734.1| - 5.8e-08 31.8 0.0 9e-08 31.2 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATPgrasp_ST PF14397.1 gi|529078731|ref|YP_008377734.1| - 0.00016 20.9 0.0 0.0021 17.2 0.0 2.0 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp TTL PF03133.10 gi|529078731|ref|YP_008377734.1| - 0.0023 16.9 0.0 0.0032 16.4 0.0 1.2 1 0 0 1 1 1 1 Tubulin-tyrosine ligase family Dala_Dala_lig_C PF07478.8 gi|529078731|ref|YP_008377734.1| - 0.0081 15.5 0.0 0.018 14.4 0.0 1.5 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATPgrasp_YheCD PF14398.1 gi|529078731|ref|YP_008377734.1| - 0.016 14.0 0.0 0.92 8.2 0.0 2.2 2 0 0 2 2 2 0 YheC/D like ATP-grasp Fe_bilin_red PF05996.7 gi|529078731|ref|YP_008377734.1| - 0.11 11.9 0.0 0.16 11.3 0.0 1.2 1 0 0 1 1 1 0 Ferredoxin-dependent bilin reductase FdhE PF04216.7 gi|529078732|ref|YP_008377735.1| - 7.6e-05 22.5 2.2 8.3e-05 22.4 1.5 1.0 1 0 0 1 1 1 1 Protein involved in formate dehydrogenase formation Lar_restr_allev PF14354.1 gi|529078732|ref|YP_008377735.1| - 0.00021 21.4 0.9 0.00023 21.4 0.6 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.2 gi|529078732|ref|YP_008377735.1| - 0.0006 19.5 1.8 0.00082 19.1 1.2 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Ogr_Delta PF04606.7 gi|529078732|ref|YP_008377735.1| - 0.0015 18.1 0.5 0.0019 17.7 0.3 1.1 1 0 0 1 1 1 1 Ogr/Delta-like zinc finger TFIIS_C PF01096.13 gi|529078732|ref|YP_008377735.1| - 0.0021 17.6 6.5 0.12 12.0 0.7 2.1 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) zf-ribbon_3 PF13248.1 gi|529078732|ref|YP_008377735.1| - 0.011 14.9 2.9 0.2 10.8 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|529078732|ref|YP_008377735.1| - 0.011 15.4 1.6 0.019 14.5 1.1 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Terminase_GpA PF05876.7 gi|529078732|ref|YP_008377735.1| - 0.018 13.4 1.8 0.02 13.2 1.3 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) DZR PF12773.2 gi|529078732|ref|YP_008377735.1| - 0.019 14.7 1.2 0.03 14.1 0.9 1.4 1 1 0 1 1 1 0 Double zinc ribbon UPF0547 PF10571.4 gi|529078732|ref|YP_008377735.1| - 0.021 14.5 4.8 1.9 8.2 0.5 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Cys_rich_CPXG PF14255.1 gi|529078732|ref|YP_008377735.1| - 0.022 14.6 1.8 0.032 14.0 1.2 1.3 1 1 0 1 1 1 0 Cysteine-rich CPXCG PhnA_Zn_Ribbon PF08274.7 gi|529078732|ref|YP_008377735.1| - 0.025 14.3 2.9 2.4 8.0 0.1 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Zn-ribbon_8 PF09723.5 gi|529078732|ref|YP_008377735.1| - 0.027 14.4 5.5 0.13 12.1 0.1 2.1 2 0 0 2 2 2 0 Zinc ribbon domain RNA_POL_M_15KD PF02150.11 gi|529078732|ref|YP_008377735.1| - 0.028 14.0 1.7 0.41 10.3 0.1 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Cys_rich_KTR PF14205.1 gi|529078732|ref|YP_008377735.1| - 0.031 13.7 0.4 0.07 12.5 0.0 1.6 2 0 0 2 2 2 0 Cysteine-rich KTR Nudix_N_2 PF14803.1 gi|529078732|ref|YP_008377735.1| - 0.037 13.7 2.5 0.11 12.1 1.7 1.7 1 1 0 1 1 1 0 Nudix N-terminal CpXC PF14353.1 gi|529078732|ref|YP_008377735.1| - 0.038 13.9 0.3 0.79 9.6 0.0 2.0 2 0 0 2 2 2 0 CpXC protein zf-H2C2_2 PF13465.1 gi|529078732|ref|YP_008377735.1| - 0.082 13.2 1.0 12 6.3 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger double domain zf-ISL3 PF14690.1 gi|529078732|ref|YP_008377735.1| - 0.083 12.9 2.4 0.13 12.2 0.1 1.9 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF2387 PF09526.5 gi|529078732|ref|YP_008377735.1| - 0.091 12.6 1.1 0.15 12.0 0.7 1.4 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) DUF4379 PF14311.1 gi|529078732|ref|YP_008377735.1| - 0.095 12.5 5.4 3.5 7.5 0.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4379) zf-NADH-PPase PF09297.6 gi|529078732|ref|YP_008377735.1| - 0.13 11.8 3.9 0.98 8.9 0.2 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Rubredoxin PF00301.15 gi|529078732|ref|YP_008377735.1| - 0.13 12.1 8.0 2.5 8.0 0.8 2.6 1 1 1 2 2 2 0 Rubredoxin zinc_ribbon_5 PF13719.1 gi|529078732|ref|YP_008377735.1| - 0.14 11.7 2.8 1.5 8.5 1.9 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zf-ZPR1 PF03367.8 gi|529078732|ref|YP_008377735.1| - 0.21 10.7 0.5 0.3 10.2 0.3 1.3 1 1 0 1 1 1 0 ZPR1 zinc-finger domain Desulfoferrod_N PF06397.7 gi|529078732|ref|YP_008377735.1| - 0.21 10.9 0.8 4.1 6.8 0.0 2.1 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain TF_Zn_Ribbon PF08271.7 gi|529078732|ref|YP_008377735.1| - 0.22 10.8 4.7 2.9 7.2 3.3 2.2 1 1 0 1 1 1 0 TFIIB zinc-binding zf-TFIIB PF13453.1 gi|529078732|ref|YP_008377735.1| - 0.3 10.3 3.6 1.2 8.4 2.6 1.7 1 1 1 2 2 2 0 Transcription factor zinc-finger DNA_ligase_ZBD PF03119.11 gi|529078732|ref|YP_008377735.1| - 0.3 10.8 0.2 0.3 10.8 0.1 2.3 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain zinc_ribbon_4 PF13717.1 gi|529078732|ref|YP_008377735.1| - 0.3 10.8 3.0 3.4 7.4 2.1 2.1 1 1 0 1 1 1 0 zinc-ribbon domain DUF35_N PF12172.3 gi|529078732|ref|YP_008377735.1| - 0.32 10.9 2.4 1.1 9.2 0.2 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-C2H2_6 PF13912.1 gi|529078732|ref|YP_008377735.1| - 0.53 10.2 4.0 9.5 6.2 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger C1_4 PF07975.7 gi|529078732|ref|YP_008377735.1| - 0.58 10.2 2.5 2.5 8.1 1.1 1.9 1 1 1 2 2 2 0 TFIIH C1-like domain zf-LITAF-like PF10601.4 gi|529078732|ref|YP_008377735.1| - 0.59 10.0 2.6 0.5 10.2 0.1 1.8 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|529078732|ref|YP_008377735.1| - 1.6 8.2 4.9 9 5.8 0.7 2.1 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.1 gi|529078732|ref|YP_008377735.1| - 2.3 7.8 6.8 53 3.4 4.7 2.1 1 1 0 1 1 1 0 zinc-ribbon domain FeS PF04060.8 gi|529078732|ref|YP_008377735.1| - 3.9 7.1 5.2 2.8 7.6 1.1 2.0 2 0 0 2 2 2 0 Putative Fe-S cluster HSP20 PF00011.16 gi|529078733|ref|YP_008377736.1| - 5.4e-09 35.8 0.0 3.1e-07 30.2 0.0 2.3 2 1 0 2 2 2 1 Hsp20/alpha crystallin family GvpH PF05455.6 gi|529078733|ref|YP_008377736.1| - 2e-06 27.5 0.8 2.8e-06 27.0 0.5 1.3 1 1 0 1 1 1 1 GvpH PIH1 PF08190.7 gi|529078733|ref|YP_008377736.1| - 0.11 11.8 0.0 0.2 11.0 0.0 1.3 1 1 0 1 1 1 0 pre-RNA processing PIH1/Nop17 Gp_dh_N PF00044.19 gi|529078734|ref|YP_008377737.1| - 1.8e-52 177.3 0.0 2.9e-52 176.6 0.0 1.4 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Gp_dh_C PF02800.15 gi|529078734|ref|YP_008377737.1| - 4.3e-51 172.4 0.0 6e-51 172.0 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.15 gi|529078734|ref|YP_008377737.1| - 0.0078 16.1 0.1 0.052 13.4 0.0 2.4 3 0 0 3 3 3 1 Dihydrodipicolinate reductase, N-terminus PGK PF00162.14 gi|529078735|ref|YP_008377738.1| - 6.4e-110 367.3 0.0 7.6e-110 367.0 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase DUF1255 PF06865.6 gi|529078735|ref|YP_008377738.1| - 0.13 12.5 0.0 0.31 11.3 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1255) MMPL PF03176.10 gi|529078736|ref|YP_008377739.1| - 4e-31 107.9 39.3 2.3e-22 79.1 12.2 2.8 3 0 0 3 3 3 2 MMPL family Sterol-sensing PF12349.3 gi|529078736|ref|YP_008377739.1| - 9.3e-15 54.4 9.9 1.2e-08 34.6 0.7 2.7 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation Patched PF02460.13 gi|529078736|ref|YP_008377739.1| - 4.2e-10 38.2 19.4 2e-08 32.7 3.8 2.6 3 0 0 3 3 3 2 Patched family ACR_tran PF00873.14 gi|529078736|ref|YP_008377739.1| - 0.0073 13.7 23.1 0.11 9.9 4.6 2.2 2 0 0 2 2 2 2 AcrB/AcrD/AcrF family Phlebovirus_G2 PF07245.6 gi|529078736|ref|YP_008377739.1| - 0.26 9.5 1.6 0.42 8.8 1.1 1.2 1 0 0 1 1 1 0 Phlebovirus glycoprotein G2 UPF0175 PF03683.8 gi|529078737|ref|YP_008377740.1| - 3.8e-16 58.3 0.5 3.8e-16 58.3 0.4 1.5 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0175) RHH_1 PF01402.16 gi|529078737|ref|YP_008377740.1| - 0.0072 16.1 0.5 0.014 15.2 0.3 1.6 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family DUF3368 PF11848.3 gi|529078738|ref|YP_008377741.1| - 1.7e-11 43.5 0.0 3.9e-11 42.3 0.0 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF3368) Metallophos_2 PF12850.2 gi|529078739|ref|YP_008377742.1| - 4.2e-31 107.8 0.2 4.8e-31 107.7 0.1 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|529078739|ref|YP_008377742.1| - 2.7e-06 26.9 3.1 0.00015 21.1 2.2 2.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|529078739|ref|YP_008377742.1| - 0.056 12.5 0.1 1.1 8.3 0.0 2.0 2 0 0 2 2 2 0 Metallophosphoesterase, calcineurin superfamily Peptidase_M29 PF02073.10 gi|529078740|ref|YP_008377743.1| - 1.6e-17 63.3 0.1 2.4e-17 62.7 0.1 1.2 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) DUF2387 PF09526.5 gi|529078741|ref|YP_008377744.1| - 0.0011 18.8 1.0 0.0022 17.8 0.7 1.5 1 0 0 1 1 1 1 Probable metal-binding protein (DUF2387) KduI PF04962.7 gi|529078741|ref|YP_008377744.1| - 0.0029 16.7 0.6 0.0073 15.4 0.1 1.7 1 1 1 2 2 2 1 KduI/IolB family Lar_restr_allev PF14354.1 gi|529078741|ref|YP_008377744.1| - 0.026 14.8 0.5 0.062 13.6 0.3 1.6 1 0 0 1 1 1 0 Restriction alleviation protein Lar zinc_ribbon_5 PF13719.1 gi|529078741|ref|YP_008377744.1| - 0.028 13.9 0.8 0.058 12.9 0.5 1.5 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|529078741|ref|YP_008377744.1| - 0.19 11.4 1.6 0.49 10.1 1.1 1.7 1 1 0 1 1 1 0 zinc-ribbon domain PCMT PF01135.14 gi|529078742|ref|YP_008377745.1| - 1.7e-62 210.6 0.0 2e-62 210.4 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.2 gi|529078742|ref|YP_008377745.1| - 1.5e-08 35.2 0.0 2.5e-08 34.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|529078742|ref|YP_008377745.1| - 1.1e-06 28.3 0.0 1.4e-06 27.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|529078742|ref|YP_008377745.1| - 2.5e-06 27.4 0.1 6.5e-06 26.1 0.1 1.7 1 1 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.5 gi|529078742|ref|YP_008377745.1| - 3.5e-05 23.4 0.1 4.9e-05 22.9 0.1 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit RrnaAD PF00398.15 gi|529078742|ref|YP_008377745.1| - 8.8e-05 21.6 0.0 0.00013 21.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase CMAS PF02353.15 gi|529078742|ref|YP_008377745.1| - 0.00012 21.3 0.0 0.00016 20.8 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.12 gi|529078742|ref|YP_008377745.1| - 0.0021 17.1 0.0 0.0029 16.6 0.0 1.1 1 0 0 1 1 1 1 Putative methyltransferase MTS PF05175.9 gi|529078742|ref|YP_008377745.1| - 0.0054 16.1 0.0 0.0083 15.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Fibrillarin PF01269.12 gi|529078742|ref|YP_008377745.1| - 0.0068 15.3 0.1 0.0094 14.8 0.1 1.1 1 0 0 1 1 1 1 Fibrillarin Methyltransf_24 PF13578.1 gi|529078742|ref|YP_008377745.1| - 0.017 15.9 0.1 0.042 14.6 0.1 1.7 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.1 gi|529078742|ref|YP_008377745.1| - 0.032 13.9 0.0 0.048 13.3 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain DUF938 PF06080.7 gi|529078742|ref|YP_008377745.1| - 0.045 13.2 0.0 0.06 12.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_32 PF13679.1 gi|529078742|ref|YP_008377745.1| - 0.053 13.1 0.0 0.077 12.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain DOT1 PF08123.8 gi|529078742|ref|YP_008377745.1| - 0.08 12.2 0.0 0.11 11.7 0.0 1.1 1 0 0 1 1 1 0 Histone methylation protein DOT1 PCMT PF01135.14 gi|529078743|ref|YP_008377746.1| - 6e-36 123.9 0.0 7.8e-36 123.5 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.2 gi|529078743|ref|YP_008377746.1| - 1.3e-06 28.9 0.0 2.5e-06 28.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|529078743|ref|YP_008377746.1| - 7.5e-06 25.4 0.0 1.1e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|529078743|ref|YP_008377746.1| - 2.1e-05 24.5 0.6 0.00012 22.0 0.4 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|529078743|ref|YP_008377746.1| - 0.00016 21.3 0.0 0.00019 21.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|529078743|ref|YP_008377746.1| - 0.041 13.0 0.0 0.065 12.3 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) RrnaAD PF00398.15 gi|529078743|ref|YP_008377746.1| - 0.049 12.6 0.0 0.071 12.1 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_11 PF08241.7 gi|529078743|ref|YP_008377746.1| - 0.11 12.9 0.0 0.22 12.0 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain TRI9 PF08195.6 gi|529078743|ref|YP_008377746.1| - 0.14 11.8 0.1 0.26 10.9 0.1 1.3 1 0 0 1 1 1 0 TRI9 protein Methyltransf_25 PF13649.1 gi|529078743|ref|YP_008377746.1| - 0.14 12.5 0.0 0.24 11.7 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Met_10 PF02475.11 gi|529078743|ref|YP_008377746.1| - 0.16 11.5 0.0 0.21 11.1 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein CRCB PF02537.10 gi|529078744|ref|YP_008377747.1| - 4.1e-21 75.0 12.2 4.8e-21 74.8 8.5 1.0 1 0 0 1 1 1 1 CrcB-like protein DUF2530 PF10745.4 gi|529078744|ref|YP_008377747.1| - 0.049 13.6 2.3 0.11 12.4 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2530) CRCB PF02537.10 gi|529078745|ref|YP_008377748.1| - 4e-26 91.2 9.2 4.9e-26 90.9 6.4 1.1 1 0 0 1 1 1 1 CrcB-like protein GtrA PF04138.9 gi|529078745|ref|YP_008377748.1| - 0.51 10.2 4.3 0.7 9.8 3.0 1.4 1 1 0 1 1 1 0 GtrA-like protein DUF202 PF02656.10 gi|529078745|ref|YP_008377748.1| - 1.2 9.3 4.4 3.7 7.8 3.1 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF202) PGA_cap PF09587.5 gi|529078747|ref|YP_008377750.1| - 2.1e-71 240.1 0.0 2.5e-71 239.9 0.0 1.1 1 0 0 1 1 1 1 Bacterial capsule synthesis protein PGA_cap NAD_binding_10 PF13460.1 gi|529078748|ref|YP_008377751.1| - 4.5e-26 91.9 0.3 6.2e-26 91.5 0.2 1.2 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|529078748|ref|YP_008377751.1| - 9.9e-13 47.8 0.0 1.2e-12 47.6 0.0 1.1 1 0 0 1 1 1 1 NmrA-like family Epimerase PF01370.16 gi|529078748|ref|YP_008377751.1| - 1e-12 48.0 0.1 3e-12 46.4 0.0 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|529078748|ref|YP_008377751.1| - 8.8e-07 27.9 0.0 1.5e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|529078748|ref|YP_008377751.1| - 1.9e-05 23.7 0.0 7.5e-05 21.7 0.0 1.9 2 0 0 2 2 2 1 RmlD substrate binding domain adh_short PF00106.20 gi|529078748|ref|YP_008377751.1| - 6.3e-05 22.9 0.1 0.00013 21.8 0.0 1.5 1 1 0 1 1 1 1 short chain dehydrogenase TrkA_N PF02254.13 gi|529078748|ref|YP_008377751.1| - 0.00015 21.7 0.1 0.046 13.7 0.0 2.8 2 1 0 2 2 2 1 TrkA-N domain Semialdhyde_dh PF01118.19 gi|529078748|ref|YP_008377751.1| - 0.0007 19.8 0.1 0.0014 18.9 0.1 1.8 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|529078748|ref|YP_008377751.1| - 0.00076 19.3 0.0 0.0017 18.2 0.0 1.6 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_4 PF07993.7 gi|529078748|ref|YP_008377751.1| - 0.0038 16.1 0.0 0.016 14.1 0.0 1.9 2 0 0 2 2 2 1 Male sterility protein Saccharop_dh PF03435.13 gi|529078748|ref|YP_008377751.1| - 0.0091 15.0 0.1 0.15 11.0 0.0 2.1 2 0 0 2 2 2 1 Saccharopine dehydrogenase KR PF08659.5 gi|529078748|ref|YP_008377751.1| - 0.021 14.4 0.1 0.042 13.5 0.0 1.7 1 1 0 1 1 1 0 KR domain Glyco_trans_4_4 PF13579.1 gi|529078748|ref|YP_008377751.1| - 0.042 13.9 0.5 0.12 12.5 0.3 1.8 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain 3HCDH_N PF02737.13 gi|529078748|ref|YP_008377751.1| - 0.091 12.4 0.0 0.19 11.3 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|529078748|ref|YP_008377751.1| - 0.13 12.0 0.0 0.92 9.3 0.0 2.0 1 1 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.11 gi|529078748|ref|YP_008377751.1| - 0.14 11.6 0.0 0.98 8.8 0.0 2.0 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA AlaDh_PNT_C PF01262.16 gi|529078748|ref|YP_008377751.1| - 0.2 11.2 0.6 0.69 9.4 0.0 2.0 2 1 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain OrfB_Zn_ribbon PF07282.6 gi|529078749|ref|YP_008377752.1| - 1.3e-20 72.8 1.5 3.3e-20 71.5 1.1 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|529078749|ref|YP_008377752.1| - 2.7e-14 53.1 0.0 4.5e-14 52.4 0.0 1.4 1 0 0 1 1 1 1 Probable transposase Rieske PF00355.21 gi|529078749|ref|YP_008377752.1| - 0.06 12.9 0.3 0.15 11.6 0.2 1.7 1 0 0 1 1 1 0 Rieske [2Fe-2S] domain ABM PF03992.11 gi|529078749|ref|YP_008377752.1| - 0.062 13.3 0.1 0.25 11.4 0.0 2.0 2 0 0 2 2 2 0 Antibiotic biosynthesis monooxygenase SprT-like PF10263.4 gi|529078749|ref|YP_008377752.1| - 0.13 11.8 3.8 0.22 11.1 2.6 1.4 1 0 0 1 1 1 0 SprT-like family RTC PF01137.16 gi|529078750|ref|YP_008377753.1| - 3.8e-62 209.0 0.0 4.8e-62 208.7 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.8 gi|529078750|ref|YP_008377753.1| - 9.3e-14 51.2 0.4 1.5e-13 50.6 0.2 1.4 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain Aldo_ket_red PF00248.16 gi|529078751|ref|YP_008377754.1| - 5e-72 242.0 0.0 6.1e-72 241.8 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family MF_alpha_N PF05436.6 gi|529078751|ref|YP_008377754.1| - 0.16 11.6 0.1 0.29 10.8 0.0 1.4 1 0 0 1 1 1 0 Mating factor alpha precursor N-terminus PMT_2 PF13231.1 gi|529078752|ref|YP_008377755.1| - 3.1e-21 75.9 15.4 3.1e-21 75.9 10.7 2.5 3 0 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase STT3 PF02516.9 gi|529078752|ref|YP_008377755.1| - 0.0002 20.4 4.1 0.0002 20.4 2.9 2.0 2 1 0 2 2 2 1 Oligosaccharyl transferase STT3 subunit DUF2723 PF11028.3 gi|529078752|ref|YP_008377755.1| - 0.0014 18.1 10.9 0.0014 18.1 7.6 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF2723) SprT-like PF10263.4 gi|529078753|ref|YP_008377756.1| - 1.1e-10 41.3 0.1 1.5e-10 40.9 0.0 1.2 1 0 0 1 1 1 1 SprT-like family NIF3 PF01784.13 gi|529078754|ref|YP_008377757.1| - 3.2e-48 164.4 0.0 3.8e-48 164.1 0.0 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) PQQ_2 PF13360.1 gi|529078755|ref|YP_008377758.1| - 5.3e-38 130.8 11.3 1.1e-20 74.0 1.5 3.0 3 0 0 3 3 3 3 PQQ-like domain PQQ_3 PF13570.1 gi|529078755|ref|YP_008377758.1| - 3.8e-28 96.8 37.5 5.8e-06 26.4 0.5 8.1 8 0 0 8 8 8 7 PQQ-like domain PQQ PF01011.16 gi|529078755|ref|YP_008377758.1| - 2.6e-24 83.4 8.0 8.3e-05 21.9 0.3 7.2 7 0 0 7 7 7 6 PQQ enzyme repeat DZR PF12773.2 gi|529078756|ref|YP_008377759.1| - 0.099 12.4 0.1 0.19 11.5 0.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon Arginase PF00491.16 gi|529078757|ref|YP_008377760.1| - 1.4e-54 185.3 3.3 1.6e-54 185.0 2.3 1.0 1 0 0 1 1 1 1 Arginase family eIF-5a PF01287.15 gi|529078758|ref|YP_008377761.1| - 6.2e-07 29.2 0.5 1.1e-06 28.4 0.4 1.5 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.7 gi|529078758|ref|YP_008377761.1| - 0.0017 18.1 0.0 0.0042 16.9 0.0 1.6 2 0 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain EFP PF01132.15 gi|529078758|ref|YP_008377761.1| - 0.031 13.9 1.6 0.16 11.6 0.1 2.2 2 0 0 2 2 2 0 Elongation factor P (EF-P) OB domain KOW PF00467.24 gi|529078758|ref|YP_008377761.1| - 0.036 13.7 0.1 1.4 8.7 0.0 2.3 2 0 0 2 2 2 0 KOW motif ABC1 PF03109.11 gi|529078759|ref|YP_008377762.1| - 2.6e-27 95.1 0.0 1.5e-26 92.7 0.0 2.1 2 0 0 2 2 2 1 ABC1 family APH PF01636.18 gi|529078759|ref|YP_008377762.1| - 5.3e-05 23.0 0.1 0.0049 16.6 0.0 3.0 2 1 1 3 3 3 1 Phosphotransferase enzyme family RIO1 PF01163.17 gi|529078759|ref|YP_008377762.1| - 0.00019 20.8 0.0 0.00039 19.8 0.0 1.5 1 0 0 1 1 1 1 RIO1 family DUF2951 PF11166.3 gi|529078759|ref|YP_008377762.1| - 0.0038 17.0 0.0 0.013 15.3 0.0 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF2951) WaaY PF06176.6 gi|529078759|ref|YP_008377762.1| - 0.021 14.0 0.1 0.048 12.8 0.0 1.6 2 0 0 2 2 2 0 Lipopolysaccharide core biosynthesis protein (WaaY) Pkinase PF00069.20 gi|529078759|ref|YP_008377762.1| - 0.039 13.0 0.0 0.073 12.2 0.0 1.4 1 0 0 1 1 1 0 Protein kinase domain HSP20 PF00011.16 gi|529078760|ref|YP_008377763.1| - 6.1e-12 45.3 0.0 7e-12 45.1 0.0 1.0 1 0 0 1 1 1 1 Hsp20/alpha crystallin family Adaptin_N PF01602.15 gi|529078761|ref|YP_008377764.1| - 0.00019 19.9 0.0 0.017 13.5 0.0 2.1 2 0 0 2 2 2 2 Adaptin N terminal region HEAT_EZ PF13513.1 gi|529078761|ref|YP_008377764.1| - 0.00095 19.5 9.5 0.27 11.7 0.1 4.5 4 1 1 5 5 5 2 HEAT-like repeat HEAT_2 PF13646.1 gi|529078761|ref|YP_008377764.1| - 0.0016 18.7 12.3 1.1 9.6 0.1 4.3 1 1 4 5 5 5 3 HEAT repeats HEAT PF02985.17 gi|529078761|ref|YP_008377764.1| - 2.3 8.5 5.9 7.2 6.9 0.0 4.1 4 1 1 5 5 5 0 HEAT repeat SBP_bac_5 PF00496.17 gi|529078762|ref|YP_008377765.1| - 7e-40 137.0 8.5 1e-39 136.4 5.9 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|529078762|ref|YP_008377765.1| - 0.0016 18.2 1.0 0.0043 16.9 0.7 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.17 gi|529078763|ref|YP_008377766.1| - 5.9e-38 130.2 13.7 5.9e-38 130.2 9.5 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Claudin_2 PF13903.1 gi|529078763|ref|YP_008377766.1| - 0.45 10.1 4.4 0.16 11.6 0.6 2.1 2 1 0 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction BPD_transp_1 PF00528.17 gi|529078764|ref|YP_008377767.1| - 1.4e-24 86.6 11.7 1.4e-24 86.6 8.1 1.9 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|529078764|ref|YP_008377767.1| - 0.0024 17.1 0.6 0.014 14.7 0.4 2.4 1 0 0 1 1 1 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.22 gi|529078765|ref|YP_008377768.1| - 1.9e-55 186.9 0.0 2.6e-28 99.0 0.0 2.2 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.7 gi|529078765|ref|YP_008377768.1| - 1.5e-35 121.3 3.2 5.4e-19 68.2 0.1 2.5 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|529078765|ref|YP_008377768.1| - 2.3e-23 83.6 1.3 3.3e-08 33.8 0.0 4.1 2 2 2 4 4 4 4 AAA domain AAA_22 PF13401.1 gi|529078765|ref|YP_008377768.1| - 6.6e-09 35.9 7.4 0.0014 18.7 0.3 3.9 2 2 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|529078765|ref|YP_008377768.1| - 2.3e-08 34.2 0.2 0.0003 20.8 0.0 2.5 2 1 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|529078765|ref|YP_008377768.1| - 5.2e-08 32.2 0.4 0.00087 18.7 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain ABC_ATPase PF09818.4 gi|529078765|ref|YP_008377768.1| - 2.2e-07 29.8 1.2 0.025 13.2 0.1 3.9 5 1 0 5 5 4 2 Predicted ATPase of the ABC class AAA_25 PF13481.1 gi|529078765|ref|YP_008377768.1| - 3.7e-07 29.7 0.0 0.0063 15.9 0.0 3.2 2 1 0 2 2 2 2 AAA domain DUF258 PF03193.11 gi|529078765|ref|YP_008377768.1| - 4.1e-07 29.3 0.0 0.0081 15.3 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function, DUF258 SMC_N PF02463.14 gi|529078765|ref|YP_008377768.1| - 1.5e-06 27.6 7.8 0.043 13.0 0.1 4.1 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|529078765|ref|YP_008377768.1| - 1.5e-06 27.8 1.2 0.047 13.1 0.0 3.8 2 2 1 4 4 4 2 AAA-like domain NB-ARC PF00931.17 gi|529078765|ref|YP_008377768.1| - 5e-06 25.5 0.1 0.024 13.5 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain AAA_23 PF13476.1 gi|529078765|ref|YP_008377768.1| - 1e-05 26.0 0.0 0.059 13.6 0.0 2.3 2 0 0 2 2 2 2 AAA domain Miro PF08477.8 gi|529078765|ref|YP_008377768.1| - 2e-05 25.0 0.0 0.076 13.5 0.0 2.5 2 0 0 2 2 2 2 Miro-like protein ArgK PF03308.11 gi|529078765|ref|YP_008377768.1| - 2.4e-05 23.2 0.6 4.3e-05 22.4 0.0 1.6 2 0 0 2 2 2 1 ArgK protein NACHT PF05729.7 gi|529078765|ref|YP_008377768.1| - 2.5e-05 23.9 1.7 0.17 11.5 0.1 2.8 3 0 0 3 3 3 2 NACHT domain AAA_15 PF13175.1 gi|529078765|ref|YP_008377768.1| - 2.6e-05 23.4 0.2 1.4 7.8 0.0 3.1 3 0 0 3 3 3 2 AAA ATPase domain AAA_17 PF13207.1 gi|529078765|ref|YP_008377768.1| - 3.9e-05 24.4 0.2 0.37 11.6 0.0 3.3 2 1 0 3 3 2 2 AAA domain MMR_HSR1 PF01926.18 gi|529078765|ref|YP_008377768.1| - 0.00011 22.1 0.0 0.067 13.1 0.0 2.4 2 0 0 2 2 2 1 50S ribosome-binding GTPase MobB PF03205.9 gi|529078765|ref|YP_008377768.1| - 0.00015 21.4 0.3 0.27 10.9 0.0 2.5 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B KaiC PF06745.8 gi|529078765|ref|YP_008377768.1| - 0.0002 20.5 0.1 0.21 10.6 0.0 2.6 2 0 0 2 2 2 2 KaiC PRK PF00485.13 gi|529078765|ref|YP_008377768.1| - 0.00024 20.7 0.0 0.22 11.0 0.0 2.3 2 0 0 2 2 2 2 Phosphoribulokinase / Uridine kinase family UPF0079 PF02367.12 gi|529078765|ref|YP_008377768.1| - 0.0003 20.4 0.2 0.52 9.9 0.0 2.4 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 RNA_helicase PF00910.17 gi|529078765|ref|YP_008377768.1| - 0.00037 20.6 0.0 1.2 9.2 0.0 2.5 2 0 0 2 2 2 2 RNA helicase AAA_18 PF13238.1 gi|529078765|ref|YP_008377768.1| - 0.0011 19.2 0.0 1 9.6 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|529078765|ref|YP_008377768.1| - 0.0011 19.1 0.0 0.27 11.4 0.0 2.6 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|529078765|ref|YP_008377768.1| - 0.0012 18.7 0.0 1.1 9.1 0.0 2.4 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|529078765|ref|YP_008377768.1| - 0.002 17.2 0.2 2.4 7.2 0.0 2.7 3 0 0 3 3 2 2 Zeta toxin Septin PF00735.13 gi|529078765|ref|YP_008377768.1| - 0.0026 16.7 0.0 1.8 7.5 0.0 2.2 2 0 0 2 2 2 2 Septin NTPase_1 PF03266.10 gi|529078765|ref|YP_008377768.1| - 0.0031 17.2 0.3 1.1 8.9 0.0 2.7 2 0 0 2 2 2 1 NTPase AAA_24 PF13479.1 gi|529078765|ref|YP_008377768.1| - 0.0039 16.7 0.1 0.76 9.3 0.0 2.8 2 0 0 2 2 2 1 AAA domain ATP-synt_ab PF00006.20 gi|529078765|ref|YP_008377768.1| - 0.0042 16.6 0.0 0.2 11.1 0.0 2.2 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain T2SE PF00437.15 gi|529078765|ref|YP_008377768.1| - 0.0046 15.9 0.1 0.57 9.0 0.0 2.6 3 0 0 3 3 2 1 Type II/IV secretion system protein PduV-EutP PF10662.4 gi|529078765|ref|YP_008377768.1| - 0.0061 16.0 0.2 0.27 10.7 0.0 2.3 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation AAA_5 PF07728.9 gi|529078765|ref|YP_008377768.1| - 0.01 15.5 0.1 1.1 8.9 0.0 2.5 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) FtsK_SpoIIIE PF01580.13 gi|529078765|ref|YP_008377768.1| - 0.012 15.0 0.0 0.82 9.1 0.0 2.6 2 0 0 2 2 2 0 FtsK/SpoIIIE family DUF87 PF01935.12 gi|529078765|ref|YP_008377768.1| - 0.013 15.3 0.3 0.34 10.7 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function DUF87 AAA_30 PF13604.1 gi|529078765|ref|YP_008377768.1| - 0.015 14.9 0.1 1.2 8.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|529078765|ref|YP_008377768.1| - 0.02 14.8 2.9 6 6.8 0.6 3.5 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit cobW PF02492.14 gi|529078765|ref|YP_008377768.1| - 0.024 14.0 0.4 1.6 8.1 0.0 2.3 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain PhoH PF02562.11 gi|529078765|ref|YP_008377768.1| - 0.027 13.6 0.0 3.1 6.9 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein AAA_14 PF13173.1 gi|529078765|ref|YP_008377768.1| - 0.032 14.1 0.0 8.2 6.3 0.0 2.5 2 0 0 2 2 2 0 AAA domain Sigma54_activat PF00158.21 gi|529078765|ref|YP_008377768.1| - 0.038 13.4 1.8 5.8 6.3 0.0 2.5 3 0 0 3 3 2 0 Sigma-54 interaction domain DUF815 PF05673.8 gi|529078765|ref|YP_008377768.1| - 0.042 12.7 0.1 1.7 7.5 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF815) FeoB_N PF02421.13 gi|529078765|ref|YP_008377768.1| - 0.052 12.8 0.0 1.3 8.2 0.0 2.3 2 0 0 2 2 2 0 Ferrous iron transport protein B IstB_IS21 PF01695.12 gi|529078765|ref|YP_008377768.1| - 0.065 12.6 0.1 10 5.4 0.0 2.7 3 0 0 3 3 3 0 IstB-like ATP binding protein Arch_ATPase PF01637.13 gi|529078765|ref|YP_008377768.1| - 0.16 11.6 0.0 22 4.6 0.0 2.4 2 0 0 2 2 2 0 Archaeal ATPase AAA_28 PF13521.1 gi|529078765|ref|YP_008377768.1| - 0.17 11.8 0.1 24 4.8 0.1 2.8 2 0 0 2 2 2 0 AAA domain OrfB_Zn_ribbon PF07282.6 gi|529078766|ref|YP_008377769.1| - 7.2e-23 80.0 1.1 1.5e-22 79.0 0.8 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|529078766|ref|YP_008377769.1| - 1.4e-12 47.5 0.1 2.1e-12 46.9 0.1 1.3 1 0 0 1 1 1 1 Probable transposase AJAP1_PANP_C PF15298.1 gi|529078767|ref|YP_008377770.1| - 0.095 12.5 0.0 0.11 12.3 0.0 1.1 1 0 0 1 1 1 0 AJAP1/PANP C-terminus NfeD PF01957.13 gi|529078767|ref|YP_008377770.1| - 0.27 11.3 1.9 0.63 10.1 0.5 1.9 1 1 1 2 2 2 0 NfeD-like C-terminal, partner-binding GIDE PF12483.3 gi|529078768|ref|YP_008377771.1| - 0.0021 17.4 0.0 0.0033 16.7 0.0 1.3 1 0 0 1 1 1 1 E3 Ubiquitin ligase CSD PF00313.17 gi|529078770|ref|YP_008377773.1| - 1.6e-21 75.8 0.6 1.7e-21 75.7 0.4 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|529078770|ref|YP_008377773.1| - 0.0025 17.4 1.3 0.0037 16.9 0.9 1.4 1 1 0 1 1 1 1 S1-like OB_RNB PF08206.6 gi|529078770|ref|YP_008377773.1| - 0.027 13.9 2.2 0.042 13.3 1.5 1.4 1 0 0 1 1 1 0 Ribonuclease B OB domain CusF_Ec PF11604.3 gi|529078770|ref|YP_008377773.1| - 0.04 13.7 0.1 0.051 13.4 0.0 1.3 1 0 0 1 1 1 0 Copper binding periplasmic protein CusF UbiA PF01040.13 gi|529078771|ref|YP_008377774.1| - 1.4e-08 34.2 34.9 1.4e-08 34.2 24.2 2.3 1 1 1 2 2 2 1 UbiA prenyltransferase family Peptidase_M50 PF02163.17 gi|529078771|ref|YP_008377774.1| - 0.16 10.9 3.7 1.2 8.0 0.0 3.0 3 1 0 3 3 3 0 Peptidase family M50 Abhydrolase_3 PF07859.8 gi|529078775|ref|YP_008377778.1| - 6.4e-73 244.8 0.8 7.9e-73 244.5 0.5 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|529078775|ref|YP_008377778.1| - 9.6e-08 31.9 0.6 2.3e-07 30.6 0.2 1.7 1 1 1 2 2 2 1 Alpha/beta hydrolase family COesterase PF00135.23 gi|529078775|ref|YP_008377778.1| - 1.5e-06 27.2 0.3 3e-06 26.2 0.2 1.5 1 1 0 1 1 1 1 Carboxylesterase family Peptidase_S9 PF00326.16 gi|529078775|ref|YP_008377778.1| - 0.0016 17.7 0.3 0.026 13.7 0.1 2.5 3 0 0 3 3 3 1 Prolyl oligopeptidase family Chlorophyllase2 PF12740.2 gi|529078775|ref|YP_008377778.1| - 0.0038 16.1 0.0 0.0059 15.5 0.0 1.2 1 0 0 1 1 1 1 Chlorophyllase enzyme Thioesterase PF00975.15 gi|529078775|ref|YP_008377778.1| - 0.014 15.6 0.0 0.021 15.0 0.0 1.3 1 0 0 1 1 1 0 Thioesterase domain DUF2974 PF11187.3 gi|529078775|ref|YP_008377778.1| - 0.056 12.8 0.0 0.078 12.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2974) DUF2424 PF10340.4 gi|529078775|ref|YP_008377778.1| - 0.059 11.9 0.4 0.25 9.9 0.2 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2424) DLH PF01738.13 gi|529078775|ref|YP_008377778.1| - 0.073 12.3 0.2 1.5 8.0 0.0 2.5 2 1 0 2 2 2 0 Dienelactone hydrolase family Esterase PF00756.15 gi|529078775|ref|YP_008377778.1| - 0.21 11.0 0.5 5.3 6.3 0.4 2.1 1 1 0 1 1 1 0 Putative esterase VGCC_beta4Aa_N PF12052.3 gi|529078776|ref|YP_008377779.1| - 0.21 11.4 1.1 1.2 9.0 0.4 2.1 2 0 0 2 2 2 0 Voltage gated calcium channel subunit beta domain 4Aa N terminal PvlArgDC PF01862.11 gi|529078777|ref|YP_008377780.1| - 3.9e-24 85.1 0.0 4.5e-24 84.9 0.0 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) Fer4_18 PF13746.1 gi|529078778|ref|YP_008377781.1| - 4.7e-07 30.1 11.2 4.7e-07 30.1 7.7 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|529078778|ref|YP_008377781.1| - 3.2e-06 26.7 9.8 0.0013 18.5 1.2 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|529078778|ref|YP_008377781.1| - 8.1e-06 26.0 5.9 0.009 16.3 0.3 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|529078778|ref|YP_008377781.1| - 1.2e-05 25.2 15.8 1.7e-05 24.7 9.9 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|529078778|ref|YP_008377781.1| - 1.4e-05 25.4 6.8 0.027 14.8 0.3 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|529078778|ref|YP_008377781.1| - 9.3e-05 22.6 15.6 0.00024 21.3 10.5 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|529078778|ref|YP_008377781.1| - 0.0066 16.2 12.6 0.16 11.8 2.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|529078778|ref|YP_008377781.1| - 0.025 14.3 17.9 0.12 12.1 11.6 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|529078778|ref|YP_008377781.1| - 0.048 13.2 18.4 0.12 11.9 2.5 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|529078778|ref|YP_008377781.1| - 0.27 11.1 21.7 1.1 9.2 4.0 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|529078778|ref|YP_008377781.1| - 0.82 10.4 14.0 8.7 7.1 2.7 2.3 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_13 PF13370.1 gi|529078778|ref|YP_008377781.1| - 3.4 8.1 14.7 0.14 12.5 2.4 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain NAD_binding_1 PF00175.16 gi|529078779|ref|YP_008377782.1| - 1e-14 55.0 0.0 1.7e-14 54.2 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.19 gi|529078779|ref|YP_008377782.1| - 1.9e-13 50.3 0.0 3.2e-13 49.6 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain DHODB_Fe-S_bind PF10418.4 gi|529078779|ref|YP_008377782.1| - 8.7e-12 44.3 1.0 1.5e-11 43.5 0.7 1.4 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FAD_binding_8 PF08022.7 gi|529078779|ref|YP_008377782.1| - 0.035 13.9 0.0 0.076 12.8 0.0 1.5 1 0 0 1 1 1 0 FAD-binding domain Oxidored_q6 PF01058.17 gi|529078780|ref|YP_008377783.1| - 6.3e-25 87.2 0.0 1.1e-24 86.4 0.0 1.4 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit NiFeSe_Hases PF00374.14 gi|529078781|ref|YP_008377784.1| - 3.2e-28 98.7 0.3 1.1e-14 54.1 0.0 2.4 1 1 2 3 3 3 2 Nickel-dependent hydrogenase CBS PF00571.23 gi|529078782|ref|YP_008377785.1| - 3.1e-43 145.2 13.0 4.5e-14 51.9 0.8 4.5 4 0 0 4 4 4 4 CBS domain HycI PF01750.13 gi|529078782|ref|YP_008377785.1| - 2.2e-17 62.7 0.0 7.4e-17 61.1 0.0 1.9 2 0 0 2 2 2 1 Hydrogenase maturation protease Ribosomal_L9_C PF03948.9 gi|529078782|ref|YP_008377785.1| - 0.013 15.5 0.6 11 6.1 0.0 3.7 3 1 1 4 4 4 0 Ribosomal protein L9, C-terminal domain Ribosomal_S30AE PF02482.14 gi|529078782|ref|YP_008377785.1| - 0.06 13.7 0.8 0.15 12.5 0.1 2.1 2 0 0 2 2 2 0 Sigma 54 modulation protein / S30EA ribosomal protein Spt5-NGN PF03439.8 gi|529078782|ref|YP_008377785.1| - 0.095 12.4 0.0 1.8 8.3 0.0 2.5 1 1 1 2 2 2 0 Early transcription elongation factor of RNA pol II, NGN section DUF1508 PF07411.7 gi|529078782|ref|YP_008377785.1| - 0.17 11.3 0.0 0.38 10.2 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1508) AAA PF00004.24 gi|529078783|ref|YP_008377786.1| - 3.8e-101 334.5 0.0 2.2e-49 167.0 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|529078783|ref|YP_008377786.1| - 5.6e-29 99.9 0.0 2.4e-28 97.9 0.0 2.1 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain CDC48_2 PF02933.12 gi|529078783|ref|YP_008377786.1| - 2.3e-15 55.9 0.1 1.2e-14 53.6 0.1 2.3 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.1 gi|529078783|ref|YP_008377786.1| - 5.3e-15 55.8 0.0 1.1e-07 32.0 0.0 3.0 2 1 0 2 2 2 2 AAA ATPase domain RuvB_N PF05496.7 gi|529078783|ref|YP_008377786.1| - 1e-14 54.1 0.0 8.6e-07 28.2 0.0 2.7 3 0 0 3 3 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|529078783|ref|YP_008377786.1| - 3.5e-13 49.8 0.0 9.6e-06 25.6 0.0 2.7 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_22 PF13401.1 gi|529078783|ref|YP_008377786.1| - 7.9e-13 48.6 0.2 0.00045 20.3 0.1 4.1 2 2 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|529078783|ref|YP_008377786.1| - 3.1e-12 47.3 0.1 0.00014 22.6 0.0 3.5 3 1 0 3 3 3 2 AAA domain AAA_5 PF07728.9 gi|529078783|ref|YP_008377786.1| - 5.6e-12 45.5 2.2 5.1e-05 23.0 0.1 4.4 3 2 0 3 3 2 2 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|529078783|ref|YP_008377786.1| - 1.3e-11 44.5 0.0 1.3e-05 25.1 0.0 2.5 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.8 gi|529078783|ref|YP_008377786.1| - 1.4e-10 40.5 0.0 0.00028 19.7 0.0 3.1 3 0 0 3 3 3 2 TIP49 C-terminus AAA_19 PF13245.1 gi|529078783|ref|YP_008377786.1| - 3.7e-09 36.2 3.3 0.00086 19.0 0.1 3.2 4 0 0 4 4 2 2 Part of AAA domain AAA_14 PF13173.1 gi|529078783|ref|YP_008377786.1| - 2e-08 34.2 0.0 0.0022 17.9 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|529078783|ref|YP_008377786.1| - 4.5e-08 32.7 6.7 0.22 10.9 0.1 4.4 2 2 1 4 4 4 2 AAA domain IstB_IS21 PF01695.12 gi|529078783|ref|YP_008377786.1| - 6.4e-08 32.2 0.1 0.011 15.1 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_18 PF13238.1 gi|529078783|ref|YP_008377786.1| - 2.3e-07 31.1 0.0 0.0068 16.7 0.0 2.8 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.7 gi|529078783|ref|YP_008377786.1| - 4.3e-07 29.2 0.0 0.028 13.4 0.0 2.8 2 0 0 2 2 2 2 Zeta toxin Mg_chelatase PF01078.16 gi|529078783|ref|YP_008377786.1| - 6.2e-07 28.7 0.4 0.033 13.3 0.0 2.8 3 0 0 3 3 3 2 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.17 gi|529078783|ref|YP_008377786.1| - 7.5e-07 29.3 0.0 0.047 13.8 0.0 2.6 2 0 0 2 2 2 2 RNA helicase AAA_28 PF13521.1 gi|529078783|ref|YP_008377786.1| - 2.2e-06 27.7 0.0 0.014 15.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_3 PF07726.6 gi|529078783|ref|YP_008377786.1| - 6.1e-06 25.8 0.0 0.091 12.3 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|529078783|ref|YP_008377786.1| - 6.1e-06 25.8 0.0 0.21 11.0 0.0 3.1 3 0 0 3 3 3 2 Sigma-54 interaction domain KaiC PF06745.8 gi|529078783|ref|YP_008377786.1| - 1.2e-05 24.5 0.6 0.43 9.6 0.0 3.3 2 1 1 3 3 3 2 KaiC Arch_ATPase PF01637.13 gi|529078783|ref|YP_008377786.1| - 1.3e-05 25.0 0.0 0.076 12.7 0.0 3.4 2 2 1 3 3 3 1 Archaeal ATPase Sigma54_activ_2 PF14532.1 gi|529078783|ref|YP_008377786.1| - 2.1e-05 24.5 0.0 0.22 11.5 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain NB-ARC PF00931.17 gi|529078783|ref|YP_008377786.1| - 2.4e-05 23.3 0.0 0.051 12.4 0.0 2.2 2 0 0 2 2 2 2 NB-ARC domain AAA_24 PF13479.1 gi|529078783|ref|YP_008377786.1| - 3.1e-05 23.6 0.3 0.062 12.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain PhoH PF02562.11 gi|529078783|ref|YP_008377786.1| - 3.1e-05 23.3 0.3 0.2 10.8 0.0 2.9 3 0 0 3 3 3 2 PhoH-like protein DUF815 PF05673.8 gi|529078783|ref|YP_008377786.1| - 3.7e-05 22.7 0.0 0.19 10.5 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF815) NACHT PF05729.7 gi|529078783|ref|YP_008377786.1| - 7.4e-05 22.4 0.1 0.27 10.8 0.0 3.3 4 0 0 4 4 3 1 NACHT domain ABC_tran PF00005.22 gi|529078783|ref|YP_008377786.1| - 9.2e-05 22.7 0.0 0.65 10.2 0.0 2.6 2 0 0 2 2 2 2 ABC transporter AAA_30 PF13604.1 gi|529078783|ref|YP_008377786.1| - 0.00016 21.3 0.1 0.68 9.4 0.0 2.8 2 0 0 2 2 2 2 AAA domain DUF2075 PF09848.4 gi|529078783|ref|YP_008377786.1| - 0.00026 20.0 0.0 0.32 9.9 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Parvo_NS1 PF01057.12 gi|529078783|ref|YP_008377786.1| - 0.00029 19.7 0.0 0.33 9.7 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 NTPase_1 PF03266.10 gi|529078783|ref|YP_008377786.1| - 0.00045 19.9 1.2 1.9 8.1 0.0 3.9 3 1 1 4 4 4 1 NTPase SKI PF01202.17 gi|529078783|ref|YP_008377786.1| - 0.00057 19.7 0.0 0.28 11.0 0.0 2.4 2 0 0 2 2 2 1 Shikimate kinase AAA_11 PF13086.1 gi|529078783|ref|YP_008377786.1| - 0.00062 19.4 0.0 0.59 9.6 0.0 2.3 2 0 0 2 2 2 2 AAA domain IPT PF01745.11 gi|529078783|ref|YP_008377786.1| - 0.0019 17.4 0.9 0.56 9.3 0.0 2.8 3 0 0 3 3 3 1 Isopentenyl transferase UPF0079 PF02367.12 gi|529078783|ref|YP_008377786.1| - 0.0019 17.7 0.0 1.8 8.2 0.0 2.5 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 KAP_NTPase PF07693.9 gi|529078783|ref|YP_008377786.1| - 0.0019 17.2 0.2 2.5 6.9 0.0 3.5 2 2 1 4 4 4 1 KAP family P-loop domain Bac_DnaA PF00308.13 gi|529078783|ref|YP_008377786.1| - 0.0061 16.2 0.0 3.6 7.1 0.0 2.5 2 0 0 2 2 2 0 Bacterial dnaA protein ResIII PF04851.10 gi|529078783|ref|YP_008377786.1| - 0.008 16.0 0.0 5 6.9 0.0 2.4 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Viral_helicase1 PF01443.13 gi|529078783|ref|YP_008377786.1| - 0.014 14.9 0.0 1.1 8.6 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase CPT PF07931.7 gi|529078783|ref|YP_008377786.1| - 0.02 14.5 0.0 3.2 7.3 0.0 2.4 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein KTI12 PF08433.5 gi|529078783|ref|YP_008377786.1| - 0.037 13.2 0.0 10 5.1 0.0 2.7 3 0 0 3 3 3 0 Chromatin associated protein KTI12 T2SE PF00437.15 gi|529078783|ref|YP_008377786.1| - 0.058 12.2 0.0 9.1 5.0 0.0 2.3 2 0 0 2 2 2 0 Type II/IV secretion system protein Torsin PF06309.6 gi|529078783|ref|YP_008377786.1| - 0.061 13.2 0.0 4 7.3 0.0 2.4 2 0 0 2 2 2 0 Torsin Cytidylate_kin2 PF13189.1 gi|529078783|ref|YP_008377786.1| - 0.075 12.9 0.0 2.1 8.2 0.0 2.3 2 0 0 2 2 2 0 Cytidylate kinase-like family Guanylate_kin PF00625.16 gi|529078783|ref|YP_008377786.1| - 0.11 11.9 0.3 50 3.2 0.0 3.4 3 1 1 4 4 3 0 Guanylate kinase AFG1_ATPase PF03969.11 gi|529078783|ref|YP_008377786.1| - 0.13 11.0 0.0 5.4 5.7 0.0 2.2 2 0 0 2 2 2 0 AFG1-like ATPase Abhydrolase_1 PF00561.15 gi|529078784|ref|YP_008377787.1| - 1.6e-25 90.0 0.1 2.1e-25 89.6 0.0 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.2 gi|529078784|ref|YP_008377787.1| - 3.3e-18 66.4 7.5 4.7e-18 65.9 5.2 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|529078784|ref|YP_008377787.1| - 9.8e-05 22.1 0.3 0.0014 18.3 0.2 2.3 1 1 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|529078784|ref|YP_008377787.1| - 0.0018 17.5 0.1 0.78 8.9 0.0 2.5 2 1 0 2 2 2 2 Prolyl oligopeptidase family Esterase PF00756.15 gi|529078784|ref|YP_008377787.1| - 0.0054 16.1 0.1 0.03 13.7 0.0 2.0 2 0 0 2 2 2 1 Putative esterase Cys_Met_Meta_PP PF01053.15 gi|529078785|ref|YP_008377788.1| - 3.2e-135 450.3 0.0 3.6e-135 450.1 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.16 gi|529078785|ref|YP_008377788.1| - 1.2e-07 31.0 0.1 1.7e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|529078785|ref|YP_008377788.1| - 5.2e-05 22.1 0.1 9.1e-05 21.3 0.1 1.4 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|529078785|ref|YP_008377788.1| - 5.6e-05 22.3 1.4 8.8e-05 21.7 1.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|529078785|ref|YP_008377788.1| - 0.00069 18.8 0.1 0.002 17.3 0.1 1.8 1 1 0 1 1 1 1 Beta-eliminating lyase Aldo_ket_red PF00248.16 gi|529078786|ref|YP_008377789.1| - 2.4e-55 187.3 0.0 2.7e-55 187.2 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Aminotran_5 PF00266.14 gi|529078787|ref|YP_008377790.1| - 7.6e-31 107.1 0.0 9.8e-31 106.8 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V DUF217 PF02697.9 gi|529078788|ref|YP_008377791.1| - 2.4e-12 46.9 0.1 2.8e-12 46.7 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 MtrG PF04210.8 gi|529078788|ref|YP_008377791.1| - 0.2 11.3 0.6 0.32 10.6 0.4 1.3 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, subunit G RHH_1 PF01402.16 gi|529078788|ref|YP_008377791.1| - 0.27 11.1 4.1 3.5 7.6 0.1 2.5 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family PIN PF01850.16 gi|529078789|ref|YP_008377792.1| - 2.8e-11 43.7 0.7 3.1e-11 43.6 0.5 1.0 1 0 0 1 1 1 1 PIN domain DNA_ligase_aden PF01653.13 gi|529078790|ref|YP_008377793.1| - 3.9e-105 351.2 0.0 6e-105 350.6 0.0 1.3 1 0 0 1 1 1 1 NAD-dependent DNA ligase adenylation domain DNA_ligase_OB PF03120.11 gi|529078790|ref|YP_008377793.1| - 1.6e-28 98.1 2.9 3.2e-28 97.1 2.0 1.5 1 0 0 1 1 1 1 NAD-dependent DNA ligase OB-fold domain HHH_2 PF12826.2 gi|529078790|ref|YP_008377793.1| - 6.3e-19 67.6 0.1 2.4e-18 65.7 0.0 2.1 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|529078790|ref|YP_008377793.1| - 6.4e-18 64.6 3.2 1.6e-08 34.6 0.1 3.7 4 0 0 4 4 4 2 Helix-hairpin-helix domain BRCT PF00533.21 gi|529078790|ref|YP_008377793.1| - 4e-14 52.5 0.0 7.9e-14 51.5 0.0 1.4 1 0 0 1 1 1 1 BRCA1 C Terminus (BRCT) domain HHH PF00633.18 gi|529078790|ref|YP_008377793.1| - 9.2e-08 31.3 0.0 7e-06 25.4 0.0 3.5 3 0 0 3 3 3 1 Helix-hairpin-helix motif DNA_ligase_ZBD PF03119.11 gi|529078790|ref|YP_008377793.1| - 1.9e-06 27.4 4.8 4.1e-06 26.3 3.3 1.6 1 0 0 1 1 1 1 NAD-dependent DNA ligase C4 zinc finger domain PTCB-BRCT PF12738.2 gi|529078790|ref|YP_008377793.1| - 0.0039 17.0 0.0 0.008 16.0 0.0 1.6 1 0 0 1 1 1 1 twin BRCT domain IPPT PF01715.12 gi|529078790|ref|YP_008377793.1| - 0.025 13.6 0.1 0.066 12.2 0.0 1.7 2 0 0 2 2 2 0 IPP transferase Plasmid_stabil PF05016.9 gi|529078790|ref|YP_008377793.1| - 0.038 14.3 0.3 0.69 10.3 0.1 2.8 3 0 0 3 3 3 0 Plasmid stabilisation system protein CK2S PF15011.1 gi|529078790|ref|YP_008377793.1| - 0.15 11.8 0.0 0.32 10.7 0.0 1.5 1 0 0 1 1 1 0 Casein Kinase 2 substrate Pirin PF02678.11 gi|529078791|ref|YP_008377794.1| - 1.2e-19 70.1 0.5 1.3e-18 66.8 0.1 2.1 2 0 0 2 2 2 1 Pirin Pirin_C PF05726.8 gi|529078791|ref|YP_008377794.1| - 3.7e-05 23.7 0.0 0.00013 21.9 0.0 1.8 2 0 0 2 2 2 1 Pirin C-terminal cupin domain Cupin_2 PF07883.6 gi|529078791|ref|YP_008377794.1| - 0.011 15.1 0.2 1.1 8.7 0.0 2.6 2 1 0 2 2 2 0 Cupin domain ABC2_membrane_2 PF12679.2 gi|529078792|ref|YP_008377795.1| - 5e-27 94.4 11.5 1.3e-26 93.1 8.0 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|529078792|ref|YP_008377795.1| - 1.1e-06 27.9 16.2 1.9e-06 27.1 11.2 1.5 1 1 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_4 PF12730.2 gi|529078792|ref|YP_008377795.1| - 1e-05 24.8 18.7 1.5e-05 24.3 12.8 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|529078792|ref|YP_008377795.1| - 3.6e-05 23.1 2.3 6.2e-05 22.3 1.6 1.4 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|529078792|ref|YP_008377795.1| - 0.0006 18.9 19.6 0.0006 18.9 13.6 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|529078793|ref|YP_008377796.1| - 1.8e-26 93.0 0.0 3.1e-26 92.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|529078793|ref|YP_008377796.1| - 2.2e-11 44.2 0.0 1.3e-06 28.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|529078793|ref|YP_008377796.1| - 0.0011 18.3 0.0 0.0022 17.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ArgK PF03308.11 gi|529078793|ref|YP_008377796.1| - 0.0024 16.7 0.4 0.0055 15.5 0.1 1.7 2 0 0 2 2 2 1 ArgK protein AAA_23 PF13476.1 gi|529078793|ref|YP_008377796.1| - 0.0042 17.4 0.1 0.0059 16.9 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|529078793|ref|YP_008377796.1| - 0.0094 15.5 0.0 0.025 14.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|529078793|ref|YP_008377796.1| - 0.011 15.7 0.0 0.019 14.9 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain MobB PF03205.9 gi|529078793|ref|YP_008377796.1| - 0.054 13.2 0.0 0.52 10.0 0.0 2.2 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B DUF258 PF03193.11 gi|529078793|ref|YP_008377796.1| - 0.068 12.3 0.0 0.099 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SbcCD_C PF13558.1 gi|529078793|ref|YP_008377796.1| - 0.12 12.2 0.0 0.36 10.7 0.0 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_10 PF12846.2 gi|529078793|ref|YP_008377796.1| - 0.13 11.6 0.0 1.2 8.5 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain SMC_N PF02463.14 gi|529078793|ref|YP_008377796.1| - 0.15 11.3 0.0 3.5 6.8 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain ABC2_membrane_2 PF12679.2 gi|529078794|ref|YP_008377797.1| - 7.8e-39 133.1 23.2 8.9e-39 133.0 16.1 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|529078794|ref|YP_008377797.1| - 2.4e-15 56.3 25.3 3.7e-15 55.7 17.5 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|529078794|ref|YP_008377797.1| - 2e-10 40.2 24.5 2e-10 40.2 17.0 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|529078794|ref|YP_008377797.1| - 5.3e-05 22.6 19.0 0.00039 19.7 13.3 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein 7tm_7 PF08395.7 gi|529078794|ref|YP_008377797.1| - 0.18 10.8 7.6 0.16 10.9 4.1 1.7 1 1 0 1 1 1 0 7tm Chemosensory receptor ABC_tran PF00005.22 gi|529078795|ref|YP_008377798.1| - 3.7e-29 101.7 0.0 6.1e-29 101.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|529078795|ref|YP_008377798.1| - 3.2e-14 53.6 0.0 2.2e-09 37.6 0.0 2.1 1 1 0 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|529078795|ref|YP_008377798.1| - 8.5e-07 29.4 0.0 1.7e-06 28.3 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_29 PF13555.1 gi|529078795|ref|YP_008377798.1| - 0.003 17.0 0.0 0.0058 16.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|529078795|ref|YP_008377798.1| - 0.0055 16.1 0.0 0.33 10.3 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain AAA_25 PF13481.1 gi|529078795|ref|YP_008377798.1| - 0.012 15.0 0.1 0.055 12.8 0.0 2.0 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|529078795|ref|YP_008377798.1| - 0.012 14.9 0.1 2.3 7.4 0.0 2.2 1 1 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|529078795|ref|YP_008377798.1| - 0.018 15.3 0.1 0.03 14.6 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|529078795|ref|YP_008377798.1| - 0.053 13.5 0.0 0.12 12.3 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain DUF258 PF03193.11 gi|529078795|ref|YP_008377798.1| - 0.064 12.4 0.0 0.11 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Flg_hook PF02120.11 gi|529078796|ref|YP_008377799.1| - 0.14 11.8 0.1 0.66 9.6 0.0 1.8 2 0 0 2 2 2 0 Flagellar hook-length control protein FliK FixQ PF05545.6 gi|529078799|ref|YP_008377802.1| - 0.14 11.8 0.1 0.33 10.6 0.1 1.6 1 0 0 1 1 1 0 Cbb3-type cytochrome oxidase component FixQ UvrC_HhH_N PF08459.6 gi|529078800|ref|YP_008377803.1| - 4.3e-41 140.0 0.0 6.6e-41 139.4 0.0 1.3 1 0 0 1 1 1 1 UvrC Helix-hairpin-helix N-terminal HHH PF00633.18 gi|529078800|ref|YP_008377803.1| - 2e-09 36.5 0.4 2.1e-06 27.0 0.1 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|529078800|ref|YP_008377803.1| - 2.6e-09 37.1 0.7 8.1e-09 35.5 0.0 2.2 2 1 1 3 3 3 1 Helix-hairpin-helix domain UVR PF02151.14 gi|529078800|ref|YP_008377803.1| - 2.4e-06 26.8 1.2 9.1e-06 25.0 0.8 1.9 1 0 0 1 1 1 1 UvrB/uvrC motif GIY-YIG PF01541.19 gi|529078800|ref|YP_008377803.1| - 2.7e-06 27.6 0.0 4.4e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 GIY-YIG catalytic domain HHH_2 PF12826.2 gi|529078800|ref|YP_008377803.1| - 3.8e-06 26.7 0.0 8.1e-06 25.6 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif IMS_HHH PF11798.3 gi|529078800|ref|YP_008377803.1| - 0.0044 16.9 0.0 3.3 7.9 0.0 2.6 2 0 0 2 2 2 2 IMS family HHH motif HHH_8 PF14716.1 gi|529078800|ref|YP_008377803.1| - 0.0098 16.0 0.0 7 6.9 0.0 2.7 2 0 0 2 2 2 2 Helix-hairpin-helix domain HHH_3 PF12836.2 gi|529078800|ref|YP_008377803.1| - 0.047 13.6 0.0 0.51 10.3 0.0 2.2 2 0 0 2 2 2 0 Helix-hairpin-helix motif 5_3_exonuc PF01367.15 gi|529078800|ref|YP_008377803.1| - 0.14 12.4 0.0 1.5 9.0 0.0 2.2 1 1 1 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold SelR PF01641.13 gi|529078801|ref|YP_008377804.1| - 1.4e-46 157.1 0.0 1.6e-46 156.9 0.0 1.0 1 0 0 1 1 1 1 SelR domain Yippee-Mis18 PF03226.9 gi|529078801|ref|YP_008377804.1| - 1.6e-05 24.8 0.0 2.2e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly Lar_restr_allev PF14354.1 gi|529078801|ref|YP_008377804.1| - 0.023 14.9 1.1 1.3 9.3 0.8 2.3 1 1 0 1 1 1 0 Restriction alleviation protein Lar DZR PF12773.2 gi|529078801|ref|YP_008377804.1| - 0.04 13.7 0.0 0.13 12.1 0.0 1.9 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|529078801|ref|YP_008377804.1| - 0.14 11.6 0.7 5.2 6.6 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|529078801|ref|YP_008377804.1| - 0.61 9.4 10.0 2.8 7.3 0.0 3.3 3 1 1 4 4 4 0 TFIIB zinc-binding GnHR_trans PF12369.3 gi|529078802|ref|YP_008377805.1| - 6.6 7.2 6.2 51 4.4 1.2 2.1 1 1 1 2 2 2 0 Gonadotropin hormone receptor transmembrane region PIRT PF15099.1 gi|529078802|ref|YP_008377805.1| - 7.5 5.7 7.6 2.1 7.5 2.1 2.2 2 0 0 2 2 2 0 Phosphoinositide-interacting protein family MAF_flag10 PF01973.13 gi|529078803|ref|YP_008377806.1| - 3.9e-27 94.8 0.0 5.6e-27 94.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 TPK_catalytic PF04263.11 gi|529078803|ref|YP_008377806.1| - 0.0034 16.9 0.2 0.013 15.0 0.2 1.8 2 0 0 2 2 2 1 Thiamin pyrophosphokinase, catalytic domain Pterin_bind PF00809.17 gi|529078804|ref|YP_008377807.1| - 4.9e-34 117.5 0.0 6.6e-34 117.1 0.0 1.2 1 0 0 1 1 1 1 Pterin binding enzyme VWA_2 PF13519.1 gi|529078805|ref|YP_008377808.1| - 1.4e-10 41.5 0.2 4.4e-10 39.9 0.2 1.8 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA PF00092.23 gi|529078805|ref|YP_008377808.1| - 6e-08 32.6 0.0 1.2e-07 31.5 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain VCBS PF13517.1 gi|529078805|ref|YP_008377808.1| - 0.42 11.0 3.7 8.6 6.8 0.0 3.5 4 1 0 4 4 4 0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella Imm49 PF15660.1 gi|529078806|ref|YP_008377809.1| - 0.086 12.8 0.0 0.1 12.6 0.0 1.1 1 0 0 1 1 1 0 Immunity protein 49 DDE_Tnp_1 PF01609.16 gi|529078808|ref|YP_008377811.1| - 3.7e-24 85.4 0.1 4.8e-24 85.0 0.1 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|529078808|ref|YP_008377811.1| - 0.0085 15.1 0.0 0.012 14.6 0.0 1.1 1 0 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_2 PF13586.1 gi|529078808|ref|YP_008377811.1| - 0.033 14.3 0.0 0.065 13.4 0.0 1.5 1 0 0 1 1 1 0 Transposase DDE domain SBP_bac_10 PF07596.6 gi|529078809|ref|YP_008377812.1| - 0.15 12.0 1.4 0.16 11.9 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1559) SpoU_methylase PF00588.14 gi|529078811|ref|YP_008377814.1| - 5.1e-29 100.9 0.0 6.8e-29 100.5 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family Methyltrn_RNA_4 PF09936.4 gi|529078811|ref|YP_008377814.1| - 0.008 15.6 0.0 0.092 12.2 0.0 2.1 2 0 0 2 2 2 1 SAM-dependent RNA methyltransferase DUF2122 PF09895.4 gi|529078811|ref|YP_008377814.1| - 0.14 12.3 0.0 0.22 11.7 0.0 1.4 1 0 0 1 1 1 0 RecB-family nuclease (DUF2122) DUF457 PF04307.9 gi|529078812|ref|YP_008377815.1| - 8.2e-06 25.2 7.7 9.8e-06 24.9 5.3 1.0 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) GatB_N PF02934.10 gi|529078813|ref|YP_008377816.1| - 9.3e-74 247.8 0.0 1.4e-73 247.2 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|529078813|ref|YP_008377816.1| - 1.1e-21 77.1 0.2 2.7e-21 75.8 0.0 1.7 2 0 0 2 2 2 1 GatB domain GAD PF02938.9 gi|529078813|ref|YP_008377816.1| - 7.2e-11 42.1 0.0 2.1e-10 40.5 0.0 1.9 1 1 0 1 1 1 1 GAD domain YqeY PF09424.5 gi|529078813|ref|YP_008377816.1| - 0.0073 16.1 0.3 0.015 15.1 0.2 1.5 1 0 0 1 1 1 1 Yqey-like protein Lyase_1 PF00206.15 gi|529078816|ref|YP_008377819.1| - 1.6e-109 365.9 0.0 2.2e-109 365.4 0.0 1.2 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.4 gi|529078816|ref|YP_008377819.1| - 7.9e-26 89.8 4.4 5.7e-25 87.1 0.3 3.1 3 0 0 3 3 3 1 Fumarase C C-terminus Mitofilin PF09731.4 gi|529078817|ref|YP_008377820.1| - 0.54 8.8 8.6 0.63 8.6 6.0 1.2 1 0 0 1 1 1 0 Mitochondrial inner membrane protein DUF605 PF04652.11 gi|529078817|ref|YP_008377820.1| - 2.2 7.6 19.6 0.2 11.0 10.0 1.7 2 0 0 2 2 2 0 Vta1 like LPAM_2 PF13627.1 gi|529078817|ref|YP_008377820.1| - 4.6 7.0 5.2 7.1 6.4 3.6 1.2 1 0 0 1 1 1 0 Prokaryotic lipoprotein-attachment site TrmB PF01978.14 gi|529078818|ref|YP_008377821.1| - 0.0005 19.7 0.2 0.0077 15.9 0.1 2.6 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_Tnp_ISL3 PF13542.1 gi|529078818|ref|YP_008377821.1| - 0.0022 17.1 0.0 1.2 8.3 0.0 2.5 2 0 0 2 2 2 2 Helix-turn-helix domain of transposase family ISL3 HTH_7 PF02796.10 gi|529078818|ref|YP_008377821.1| - 0.0033 17.2 0.1 0.11 12.4 0.1 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_IclR PF09339.5 gi|529078818|ref|YP_008377821.1| - 0.0081 15.7 0.1 0.017 14.6 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain OrfB_Zn_ribbon PF07282.6 gi|529078820|ref|YP_008377823.1| - 2.8e-22 78.1 0.4 4.7e-22 77.4 0.3 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|529078820|ref|YP_008377823.1| - 0.0063 15.9 0.0 0.014 14.8 0.0 1.5 2 0 0 2 2 2 1 Probable transposase DUF1722 PF08349.6 gi|529078820|ref|YP_008377823.1| - 0.058 13.2 0.5 1.7 8.5 0.1 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF1722) HTH_11 PF08279.7 gi|529078823|ref|YP_008377826.1| - 0.012 15.2 0.2 0.017 14.7 0.2 1.3 1 0 0 1 1 1 0 HTH domain HTH_40 PF14493.1 gi|529078823|ref|YP_008377826.1| - 0.014 15.5 0.0 0.018 15.2 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|529078823|ref|YP_008377826.1| - 0.047 13.3 0.0 0.074 12.7 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|529078823|ref|YP_008377826.1| - 0.055 13.2 0.5 0.089 12.6 0.3 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Zn-ribbon_8 PF09723.5 gi|529078823|ref|YP_008377826.1| - 0.062 13.2 4.9 0.13 12.2 3.2 1.6 1 1 0 1 1 1 0 Zinc ribbon domain DUF2984 PF11203.3 gi|529078823|ref|YP_008377826.1| - 0.12 12.5 1.5 0.23 11.5 0.9 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2984) DUF4503 PF14951.1 gi|529078823|ref|YP_008377826.1| - 0.12 10.4 0.0 0.14 10.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4503) PhnA_Zn_Ribbon PF08274.7 gi|529078823|ref|YP_008377826.1| - 0.12 12.1 4.7 2.2 8.1 1.1 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon HTH_Tnp_ISL3 PF13542.1 gi|529078823|ref|YP_008377826.1| - 0.14 11.3 0.5 0.2 10.8 0.3 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 DNA_RNApol_7kD PF03604.8 gi|529078823|ref|YP_008377826.1| - 0.25 10.8 2.2 0.62 9.5 1.5 1.7 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-ISL3 PF14690.1 gi|529078823|ref|YP_008377826.1| - 0.3 11.1 1.6 9.3 6.3 0.2 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 HNH PF01844.18 gi|529078823|ref|YP_008377826.1| - 0.61 10.0 5.5 0.95 9.3 0.4 2.5 1 1 2 3 3 3 0 HNH endonuclease zf-trcl PF13451.1 gi|529078823|ref|YP_008377826.1| - 3.7 7.2 8.0 0.65 9.6 0.7 2.1 1 1 1 2 2 2 0 Probable zinc-binding domain PTH2 PF01981.11 gi|529078824|ref|YP_008377827.1| - 3.1e-39 133.2 0.1 3.4e-39 133.1 0.1 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 Proteasome PF00227.21 gi|529078825|ref|YP_008377828.1| - 1.1e-54 184.6 0.0 1.3e-54 184.3 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|529078825|ref|YP_008377828.1| - 2.2e-14 52.4 0.1 4.2e-14 51.5 0.1 1.5 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature Proteasome PF00227.21 gi|529078826|ref|YP_008377829.1| - 4.6e-42 143.4 0.6 5.4e-42 143.2 0.4 1.0 1 0 0 1 1 1 1 Proteasome subunit TruD PF01142.13 gi|529078827|ref|YP_008377830.1| - 8.9e-92 307.6 0.0 7.3e-91 304.6 0.0 1.9 1 1 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) MFS_1 PF07690.11 gi|529078829|ref|YP_008377832.1| - 4.8e-15 55.1 58.5 4.1e-11 42.1 22.3 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF2103 PF09876.4 gi|529078830|ref|YP_008377833.1| - 2.7e-42 142.6 0.5 2.7e-42 142.6 0.4 1.7 2 0 0 2 2 2 1 Predicted metal-binding protein (DUF2103) HlyD_2 PF12700.2 gi|529078830|ref|YP_008377833.1| - 0.12 11.4 0.0 0.19 10.8 0.0 1.2 1 0 0 1 1 1 0 HlyD family secretion protein Ribosomal_L37ae PF01780.14 gi|529078831|ref|YP_008377834.1| - 2.3e-31 107.4 1.9 2.8e-31 107.2 1.3 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.2 gi|529078831|ref|YP_008377834.1| - 0.0011 18.7 1.5 0.0018 18.0 1.0 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Rubredoxin PF00301.15 gi|529078831|ref|YP_008377834.1| - 0.0015 18.3 2.2 0.94 9.4 0.1 2.2 2 0 0 2 2 2 2 Rubredoxin zf-H2C2_2 PF13465.1 gi|529078831|ref|YP_008377834.1| - 0.0023 18.1 1.1 0.86 10.0 0.1 2.2 2 0 0 2 2 2 2 Zinc-finger double domain Zn-ribbon_8 PF09723.5 gi|529078831|ref|YP_008377834.1| - 0.0041 17.0 2.3 0.069 13.1 0.1 2.2 2 0 0 2 2 2 1 Zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|529078831|ref|YP_008377834.1| - 0.0062 16.1 0.8 0.009 15.6 0.5 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-C2H2 PF00096.21 gi|529078831|ref|YP_008377834.1| - 0.043 14.1 3.5 1.2 9.6 0.3 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-ribbon_3 PF13248.1 gi|529078831|ref|YP_008377834.1| - 0.049 12.8 3.6 1.4 8.2 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2H2_4 PF13894.1 gi|529078831|ref|YP_008377834.1| - 0.12 12.7 2.2 1.9 9.0 0.2 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger zf-BED PF02892.10 gi|529078831|ref|YP_008377834.1| - 0.12 12.1 0.4 0.19 11.5 0.3 1.4 1 0 0 1 1 1 0 BED zinc finger zf-CHCC PF10276.4 gi|529078831|ref|YP_008377834.1| - 0.17 11.7 4.7 0.38 10.6 0.5 2.2 2 0 0 2 2 2 0 Zinc-finger domain zf-C2H2_6 PF13912.1 gi|529078831|ref|YP_008377834.1| - 0.18 11.7 2.5 10 6.1 0.2 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger TF_Zn_Ribbon PF08271.7 gi|529078831|ref|YP_008377834.1| - 0.36 10.1 2.7 0.62 9.4 1.9 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|529078831|ref|YP_008377834.1| - 0.53 9.8 6.6 2.3 7.8 0.3 2.2 1 1 1 2 2 2 0 zinc-ribbon domain zf-C4_Topoisom PF01396.14 gi|529078831|ref|YP_008377834.1| - 0.53 9.8 2.9 1.3 8.5 2.1 1.7 1 1 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger Sgf11 PF08209.6 gi|529078831|ref|YP_008377834.1| - 0.65 9.3 2.5 0.96 8.8 0.1 2.4 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) Zn_ribbon_recom PF13408.1 gi|529078831|ref|YP_008377834.1| - 2.7 8.3 5.1 1.5 9.1 0.7 2.2 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain zf-ISL3 PF14690.1 gi|529078831|ref|YP_008377834.1| - 3.6 7.6 5.2 1.1 9.3 0.3 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DNA_RNApol_7kD PF03604.8 gi|529078832|ref|YP_008377835.1| - 2.3e-10 39.7 6.3 2.8e-10 39.4 4.3 1.1 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.1 gi|529078832|ref|YP_008377835.1| - 0.00035 19.6 0.2 0.024 13.8 0.0 2.0 2 0 0 2 2 2 1 zinc-ribbon domain HypA PF01155.14 gi|529078832|ref|YP_008377835.1| - 0.00038 20.1 0.5 0.00039 20.0 0.4 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family A2L_zn_ribbon PF08792.5 gi|529078832|ref|YP_008377835.1| - 0.0006 19.1 1.0 0.046 13.1 1.7 2.0 1 1 1 2 2 2 2 A2L zinc ribbon domain DUF329 PF03884.9 gi|529078832|ref|YP_008377835.1| - 0.0011 18.4 0.6 0.46 10.0 0.0 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF329) TF_Zn_Ribbon PF08271.7 gi|529078832|ref|YP_008377835.1| - 0.0023 17.2 1.0 0.003 16.8 0.7 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.2 gi|529078832|ref|YP_008377835.1| - 0.0031 17.2 4.6 0.095 12.5 0.1 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain zf-CHCC PF10276.4 gi|529078832|ref|YP_008377835.1| - 0.006 16.3 0.2 0.01 15.6 0.1 1.4 1 0 0 1 1 1 1 Zinc-finger domain Cys_rich_CPXG PF14255.1 gi|529078832|ref|YP_008377835.1| - 0.0066 16.2 0.2 0.028 14.2 0.0 2.0 2 0 0 2 2 2 1 Cysteine-rich CPXCG zinc_ribbon_2 PF13240.1 gi|529078832|ref|YP_008377835.1| - 0.0097 15.3 3.8 0.075 12.5 2.6 2.0 1 1 0 1 1 1 1 zinc-ribbon domain DUF951 PF06107.6 gi|529078832|ref|YP_008377835.1| - 0.013 15.0 1.6 1 8.9 0.1 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF951) DZR PF12773.2 gi|529078832|ref|YP_008377835.1| - 0.013 15.2 0.7 0.031 14.0 0.5 1.6 1 1 0 1 1 1 0 Double zinc ribbon zf-ISL3 PF14690.1 gi|529078832|ref|YP_008377835.1| - 0.015 15.3 1.2 0.12 12.3 0.1 2.0 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Sgf11 PF08209.6 gi|529078832|ref|YP_008377835.1| - 0.032 13.5 3.3 0.81 9.0 0.3 2.3 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Prok-RING_1 PF14446.1 gi|529078832|ref|YP_008377835.1| - 0.044 13.5 1.5 0.15 11.8 1.1 1.7 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 zf-HIT PF04438.11 gi|529078832|ref|YP_008377835.1| - 0.047 13.3 3.5 0.91 9.2 0.4 2.1 2 0 0 2 2 2 0 HIT zinc finger zf-Di19 PF05605.7 gi|529078832|ref|YP_008377835.1| - 0.059 13.5 0.2 0.61 10.2 0.0 2.0 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Spt4 PF06093.8 gi|529078832|ref|YP_008377835.1| - 0.06 13.2 0.2 0.065 13.1 0.1 1.0 1 0 0 1 1 1 0 Spt4/RpoE2 zinc finger zf-AN1 PF01428.11 gi|529078832|ref|YP_008377835.1| - 0.063 13.1 0.9 0.15 11.9 0.7 1.6 1 1 1 2 2 2 0 AN1-like Zinc finger zinc-ribbons_6 PF07191.7 gi|529078832|ref|YP_008377835.1| - 0.074 12.8 0.4 0.1 12.4 0.3 1.3 1 1 0 1 1 1 0 zinc-ribbons TFIIS_C PF01096.13 gi|529078832|ref|YP_008377835.1| - 0.077 12.6 1.7 4.7 6.9 0.0 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Zn_ribbon_recom PF13408.1 gi|529078832|ref|YP_008377835.1| - 0.085 13.1 1.5 1.2 9.4 0.1 2.1 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain zf-C2H2_4 PF13894.1 gi|529078832|ref|YP_008377835.1| - 0.09 13.1 1.2 2.2 8.8 0.0 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger CpXC PF14353.1 gi|529078832|ref|YP_008377835.1| - 0.094 12.6 1.4 1.2 9.0 0.0 2.0 1 1 1 2 2 2 0 CpXC protein Lar_restr_allev PF14354.1 gi|529078832|ref|YP_008377835.1| - 0.096 13.0 0.7 0.3 11.3 0.5 1.8 1 1 0 1 1 1 0 Restriction alleviation protein Lar RNHCP PF12647.2 gi|529078832|ref|YP_008377835.1| - 0.12 12.2 0.6 0.15 11.8 0.4 1.3 1 1 0 1 1 1 0 RNHCP domain zf-TFIIB PF13453.1 gi|529078832|ref|YP_008377835.1| - 0.13 11.4 1.7 0.31 10.2 1.2 1.6 1 1 1 2 2 2 0 Transcription factor zinc-finger DUF3268 PF11672.3 gi|529078832|ref|YP_008377835.1| - 0.15 12.1 1.0 2.7 8.0 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3268) C1_1 PF00130.17 gi|529078832|ref|YP_008377835.1| - 0.15 11.7 1.0 0.22 11.2 0.7 1.4 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc_ribbon_4 PF13717.1 gi|529078832|ref|YP_008377835.1| - 0.16 11.6 5.7 6.4 6.5 4.0 2.2 1 1 0 1 1 1 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|529078832|ref|YP_008377835.1| - 0.17 11.5 3.0 0.26 10.9 2.0 1.5 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-RING_3 PF14369.1 gi|529078832|ref|YP_008377835.1| - 0.19 11.7 1.7 0.32 11.0 1.2 1.5 1 0 0 1 1 1 0 zinc-finger zf-C4_Topoisom PF01396.14 gi|529078832|ref|YP_008377835.1| - 0.23 11.0 1.7 0.49 9.9 0.1 1.9 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_5 PF13719.1 gi|529078832|ref|YP_008377835.1| - 0.24 10.9 6.2 11 5.7 4.3 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|529078832|ref|YP_008377835.1| - 0.39 10.7 5.1 4 7.4 3.5 2.0 1 1 0 1 1 1 0 Zinc ribbon domain Desulfoferrod_N PF06397.7 gi|529078832|ref|YP_008377835.1| - 0.4 10.1 2.2 3.9 6.9 0.1 2.1 1 1 1 2 2 2 0 Desulfoferrodoxin, N-terminal domain zf-NADH-PPase PF09297.6 gi|529078832|ref|YP_008377835.1| - 0.87 9.1 0.1 0.87 9.1 0.1 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-C2HC_2 PF13913.1 gi|529078832|ref|YP_008377835.1| - 1.1 9.0 5.0 6.2 6.6 0.7 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zf-C2H2 PF00096.21 gi|529078832|ref|YP_008377835.1| - 1.5 9.3 4.1 8.8 6.8 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type UPF0547 PF10571.4 gi|529078832|ref|YP_008377835.1| - 4.2 7.1 7.2 0.62 9.8 1.3 2.0 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Mu-like_Com PF10122.4 gi|529078832|ref|YP_008377835.1| - 4.2 6.5 7.5 6.5 5.8 1.0 2.1 1 1 1 2 2 2 0 Mu-like prophage protein Com Pcc1 PF09341.5 gi|529078833|ref|YP_008377836.1| - 7.1e-15 54.8 0.2 7.5e-15 54.7 0.1 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 ABC2_membrane_2 PF12679.2 gi|529078834|ref|YP_008377837.1| - 0.58 8.9 9.3 8 5.2 0.0 2.4 2 1 0 2 2 2 0 ABC-2 family transporter protein Prefoldin_2 PF01920.15 gi|529078835|ref|YP_008377838.1| - 2.7e-25 88.1 18.7 3e-25 88.0 13.0 1.0 1 0 0 1 1 1 1 Prefoldin subunit ALIX_LYPXL_bnd PF13949.1 gi|529078835|ref|YP_008377838.1| - 0.0006 18.8 8.5 0.00075 18.5 5.9 1.1 1 0 0 1 1 1 1 ALIX V-shaped domain binding to HIV DUF3584 PF12128.3 gi|529078835|ref|YP_008377838.1| - 0.0024 15.3 8.8 0.0029 15.0 6.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) Sigma70_ner PF04546.8 gi|529078835|ref|YP_008377838.1| - 0.025 14.2 3.2 0.025 14.2 2.3 2.0 1 1 1 2 2 2 0 Sigma-70, non-essential region AAA_27 PF13514.1 gi|529078835|ref|YP_008377838.1| - 0.026 12.2 11.3 0.035 11.7 7.8 1.1 1 0 0 1 1 1 0 AAA domain Cortex-I_coil PF09304.5 gi|529078835|ref|YP_008377838.1| - 0.04 13.9 3.9 0.04 13.9 2.7 2.1 1 1 1 2 2 2 0 Cortexillin I, coiled coil Plasmid_stabil PF05016.9 gi|529078835|ref|YP_008377838.1| - 0.043 14.2 0.1 6.6 7.2 0.2 2.2 2 0 0 2 2 2 0 Plasmid stabilisation system protein Prefoldin PF02996.12 gi|529078835|ref|YP_008377838.1| - 0.053 13.1 17.6 0.058 13.0 2.8 2.5 1 1 2 3 3 3 0 Prefoldin subunit Laminin_I PF06008.9 gi|529078835|ref|YP_008377838.1| - 0.057 12.7 13.2 0.64 9.2 0.3 2.1 2 0 0 2 2 2 0 Laminin Domain I Radical_SAM_N PF08497.5 gi|529078835|ref|YP_008377838.1| - 0.089 11.7 2.0 0.11 11.4 1.4 1.1 1 0 0 1 1 1 0 Radical SAM N-terminal Seryl_tRNA_N PF02403.17 gi|529078835|ref|YP_008377838.1| - 0.11 12.5 11.2 0.36 10.8 0.7 2.1 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF4404 PF14357.1 gi|529078835|ref|YP_008377838.1| - 0.12 12.8 10.2 2.1 8.8 0.5 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4404) DUF2353 PF09789.4 gi|529078835|ref|YP_008377838.1| - 0.19 10.9 8.1 0.22 10.7 5.6 1.0 1 0 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) MutS_III PF05192.13 gi|529078835|ref|YP_008377838.1| - 0.2 11.4 1.7 0.26 11.0 1.2 1.1 1 0 0 1 1 1 0 MutS domain III Laminin_II PF06009.7 gi|529078835|ref|YP_008377838.1| - 0.2 11.4 10.0 0.48 10.1 6.9 1.6 1 1 0 1 1 1 0 Laminin Domain II DUF3610 PF12272.3 gi|529078835|ref|YP_008377838.1| - 0.22 11.1 0.9 0.36 10.4 0.3 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3610) DUF4243 PF14027.1 gi|529078835|ref|YP_008377838.1| - 0.25 10.7 2.1 0.33 10.3 1.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4243) Baculo_PEP_C PF04513.7 gi|529078835|ref|YP_008377838.1| - 0.26 11.1 10.5 0.81 9.5 7.3 1.7 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus eIF3_subunit PF08597.5 gi|529078835|ref|YP_008377838.1| - 0.3 10.5 8.2 0.4 10.2 5.7 1.1 1 0 0 1 1 1 0 Translation initiation factor eIF3 subunit PAF-AH_p_II PF03403.8 gi|529078835|ref|YP_008377838.1| - 0.37 9.0 2.7 0.3 9.3 1.3 1.3 1 1 0 1 1 1 0 Platelet-activating factor acetylhydrolase, isoform II DUF812 PF05667.6 gi|529078835|ref|YP_008377838.1| - 0.44 8.9 9.9 0.66 8.4 6.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF812) SseC PF04888.7 gi|529078835|ref|YP_008377838.1| - 0.49 9.6 11.1 0.32 10.2 0.1 2.0 2 0 0 2 2 2 0 Secretion system effector C (SseC) like family Glyco_hydro_4C PF11975.3 gi|529078835|ref|YP_008377838.1| - 0.68 9.6 3.1 1 9.1 2.1 1.2 1 0 0 1 1 1 0 Family 4 glycosyl hydrolase C-terminal domain Med9 PF07544.8 gi|529078835|ref|YP_008377838.1| - 0.78 9.5 10.3 3.2 7.5 1.8 2.3 2 0 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 DUF4140 PF13600.1 gi|529078835|ref|YP_008377838.1| - 0.87 10.0 13.4 0.75 10.2 0.7 2.2 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) Syntaxin-6_N PF09177.6 gi|529078835|ref|YP_008377838.1| - 0.98 9.8 12.1 0.33 11.4 0.8 2.2 1 1 1 2 2 2 0 Syntaxin 6, N-terminal CDC37_N PF03234.9 gi|529078835|ref|YP_008377838.1| - 1 9.6 10.6 1.3 9.3 7.4 1.1 1 0 0 1 1 1 0 Cdc37 N terminal kinase binding EzrA PF06160.7 gi|529078835|ref|YP_008377838.1| - 1 7.4 14.1 1.7 6.7 9.8 1.3 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA TPR_MLP1_2 PF07926.7 gi|529078835|ref|YP_008377838.1| - 1.1 9.0 19.8 15 5.3 13.8 2.1 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein BLOC1_2 PF10046.4 gi|529078835|ref|YP_008377838.1| - 1.1 9.3 11.0 1.9 8.6 0.6 2.1 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 TraF_2 PF13729.1 gi|529078835|ref|YP_008377838.1| - 1.2 7.8 8.3 0.86 8.3 0.3 2.0 1 1 1 2 2 2 0 F plasmid transfer operon, TraF, protein XhlA PF10779.4 gi|529078835|ref|YP_008377838.1| - 1.5 8.7 12.5 0.17 11.8 1.2 2.2 2 0 0 2 2 2 0 Haemolysin XhlA WXG100 PF06013.7 gi|529078835|ref|YP_008377838.1| - 1.5 8.8 12.7 11 6.0 4.8 2.6 2 1 0 2 2 2 0 Proteins of 100 residues with WXG Ax_dynein_light PF10211.4 gi|529078835|ref|YP_008377838.1| - 1.6 8.5 12.4 0.72 9.6 2.0 2.0 2 0 0 2 2 2 0 Axonemal dynein light chain DUF4446 PF14584.1 gi|529078835|ref|YP_008377838.1| - 1.6 8.5 8.0 1.3 8.8 0.5 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4446) Tropomyosin_1 PF12718.2 gi|529078835|ref|YP_008377838.1| - 1.6 8.5 26.3 41 4.0 18.3 2.1 1 1 0 1 1 1 0 Tropomyosin like DUF1664 PF07889.7 gi|529078835|ref|YP_008377838.1| - 1.6 8.5 10.1 0.36 10.6 0.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Reo_sigmaC PF04582.7 gi|529078835|ref|YP_008377838.1| - 1.8 7.6 4.4 7.2 5.6 3.1 1.7 1 1 0 1 1 1 0 Reovirus sigma C capsid protein Spectrin PF00435.16 gi|529078835|ref|YP_008377838.1| - 1.8 8.8 15.3 9.8 6.5 10.2 2.1 1 1 0 1 1 1 0 Spectrin repeat PilJ PF13675.1 gi|529078835|ref|YP_008377838.1| - 1.9 8.8 12.6 1.1 9.5 0.7 2.3 1 1 0 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term P4Ha_N PF08336.6 gi|529078835|ref|YP_008377838.1| - 2.2 8.0 8.4 2.4 7.9 0.8 2.1 2 0 0 2 2 2 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region ING PF12998.2 gi|529078835|ref|YP_008377838.1| - 3.2 8.0 10.8 11 6.2 7.5 1.8 1 1 0 1 1 1 0 Inhibitor of growth proteins N-terminal histone-binding Fib_alpha PF08702.5 gi|529078835|ref|YP_008377838.1| - 3.3 7.8 10.6 1.2 9.2 0.5 2.0 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family DUF2968 PF11180.3 gi|529078835|ref|YP_008377838.1| - 3.3 7.0 15.8 3.6 6.9 5.9 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) Bac_GDH PF05088.7 gi|529078835|ref|YP_008377838.1| - 3.5 4.9 6.5 4 4.6 4.5 1.0 1 0 0 1 1 1 0 Bacterial NAD-glutamate dehydrogenase GAS PF13851.1 gi|529078835|ref|YP_008377838.1| - 3.5 6.7 18.4 6 6.0 12.8 1.2 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding DUF948 PF06103.6 gi|529078835|ref|YP_008377838.1| - 3.5 7.5 10.6 0.53 10.1 0.6 2.2 1 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) ADIP PF11559.3 gi|529078835|ref|YP_008377838.1| - 3.5 7.4 16.0 1.4 8.7 1.6 2.0 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding COG2 PF06148.6 gi|529078835|ref|YP_008377838.1| - 4.1 7.2 11.5 7.7e+02 -0.1 8.0 2.1 1 1 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF4164 PF13747.1 gi|529078835|ref|YP_008377838.1| - 4.2 7.5 14.2 1.9 8.6 2.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) TMF_DNA_bd PF12329.3 gi|529078835|ref|YP_008377838.1| - 4.2 7.2 19.6 0.12 12.2 2.4 2.3 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding CENP-F_leu_zip PF10473.4 gi|529078835|ref|YP_008377838.1| - 4.2 7.2 21.3 6.5 6.6 5.2 2.1 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 NPV_P10 PF05531.7 gi|529078835|ref|YP_008377838.1| - 5.3 7.3 10.9 4.8 7.5 0.3 2.2 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF935 PF06074.7 gi|529078835|ref|YP_008377838.1| - 5.5 5.5 10.0 6.6 5.3 6.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF935) V_ATPase_I PF01496.14 gi|529078835|ref|YP_008377838.1| - 6.2 4.5 15.2 29 2.3 10.5 1.7 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family HTH_Tnp_Mu_1 PF02316.11 gi|529078835|ref|YP_008377838.1| - 6.4 6.4 7.7 4.2 7.0 1.6 2.0 1 1 1 2 2 2 0 Mu DNA-binding domain DUF1759 PF03564.10 gi|529078835|ref|YP_008377838.1| - 6.5 6.5 6.8 9.5 6.0 1.5 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1759) ERM PF00769.14 gi|529078835|ref|YP_008377838.1| - 6.9 6.1 22.5 11 5.4 15.6 1.2 1 1 0 1 1 1 0 Ezrin/radixin/moesin family DUF848 PF05852.6 gi|529078835|ref|YP_008377838.1| - 7.3 6.4 16.3 29 4.4 11.4 1.7 1 1 0 1 1 1 0 Gammaherpesvirus protein of unknown function (DUF848) FlxA PF14282.1 gi|529078835|ref|YP_008377838.1| - 7.4 6.5 19.2 0.82 9.6 0.8 2.1 2 0 0 2 2 2 0 FlxA-like protein DUF964 PF06133.6 gi|529078835|ref|YP_008377838.1| - 8.1 6.5 20.0 2.8 8.0 8.8 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF964) Mnd1 PF03962.10 gi|529078835|ref|YP_008377838.1| - 8.5 5.9 16.4 5 6.7 1.4 2.0 1 1 1 2 2 2 0 Mnd1 family Spc24 PF08286.6 gi|529078835|ref|YP_008377838.1| - 8.6 6.0 18.2 1.6 8.4 2.5 2.2 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 bZIP_1 PF00170.16 gi|529078835|ref|YP_008377838.1| - 8.7 6.3 14.0 0.48 10.4 1.4 2.6 2 1 0 2 2 2 0 bZIP transcription factor IncA PF04156.9 gi|529078835|ref|YP_008377838.1| - 8.8 5.8 26.8 33 3.9 18.6 1.7 1 1 0 1 1 1 0 IncA protein LXG PF04740.7 gi|529078835|ref|YP_008377838.1| - 9.3 5.9 12.7 14 5.3 2.7 2.1 1 1 1 2 2 2 0 LXG domain of WXG superfamily SlyX PF04102.7 gi|529078835|ref|YP_008377838.1| - 9.6 6.6 13.8 0.98 9.8 0.3 2.4 2 1 0 2 2 2 0 SlyX DUF2408 PF10303.4 gi|529078835|ref|YP_008377838.1| - 9.8 6.3 9.9 35 4.5 6.9 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) Bap31 PF05529.7 gi|529078835|ref|YP_008377838.1| - 9.8 5.5 10.0 14 5.0 6.9 1.2 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like DUF3194 PF11419.3 gi|529078836|ref|YP_008377839.1| - 0.00011 22.3 1.9 0.00013 22.0 1.3 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3194) GTP_EFTU PF00009.22 gi|529078838|ref|YP_008377841.1| - 2.2e-32 112.0 0.0 2.9e-31 108.3 0.0 2.2 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.3 gi|529078838|ref|YP_008377841.1| - 1e-22 80.0 1.6 2.9e-22 78.6 1.1 1.7 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.20 gi|529078838|ref|YP_008377841.1| - 3.6e-14 52.6 9.0 4.4e-10 39.5 0.7 3.1 2 1 0 2 2 2 2 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|529078838|ref|YP_008377841.1| - 7.6e-13 47.9 0.0 2.7e-12 46.1 0.0 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.18 gi|529078838|ref|YP_008377841.1| - 1e-06 28.6 0.0 2.3e-06 27.5 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase MobB PF03205.9 gi|529078838|ref|YP_008377841.1| - 0.0078 15.9 0.2 0.029 14.0 0.1 2.0 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Miro PF08477.8 gi|529078838|ref|YP_008377841.1| - 0.0097 16.3 0.0 0.022 15.2 0.0 1.6 1 0 0 1 1 1 1 Miro-like protein Dynamin_N PF00350.18 gi|529078838|ref|YP_008377841.1| - 0.0099 15.7 0.2 0.53 10.0 0.0 2.5 2 0 0 2 2 2 1 Dynamin family ATP_bind_1 PF03029.12 gi|529078838|ref|YP_008377841.1| - 0.03 13.8 0.0 0.1 12.0 0.0 1.9 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein MFS_1 PF07690.11 gi|529078839|ref|YP_008377842.1| - 1e-16 60.6 59.4 3.2e-10 39.2 23.1 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily Nuc_H_symport PF03825.11 gi|529078839|ref|YP_008377842.1| - 3e-09 36.1 20.5 4.4e-09 35.5 14.2 1.1 1 0 0 1 1 1 1 Nucleoside H+ symporter MFS_1_like PF12832.2 gi|529078839|ref|YP_008377842.1| - 1.6e-08 34.2 0.1 1.6e-08 34.2 0.1 2.7 4 0 0 4 4 4 1 MFS_1 like family LacY_symp PF01306.14 gi|529078839|ref|YP_008377842.1| - 0.064 11.8 17.8 0.01 14.4 8.8 2.1 2 1 0 2 2 2 0 LacY proton/sugar symporter Sugar_tr PF00083.19 gi|529078839|ref|YP_008377842.1| - 9.2 4.7 29.3 0.034 12.7 2.7 3.6 1 1 1 3 3 3 0 Sugar (and other) transporter PRC PF05239.11 gi|529078840|ref|YP_008377843.1| - 3.7e-10 39.5 0.0 4.1e-10 39.3 0.0 1.1 1 0 0 1 1 1 1 PRC-barrel domain Rad50_zn_hook PF04423.9 gi|529078841|ref|YP_008377844.1| - 0.00031 20.1 4.4 0.12 11.8 0.4 3.2 2 1 1 3 3 3 2 Rad50 zinc hook motif zf-C3HC4_3 PF13920.1 gi|529078841|ref|YP_008377844.1| - 0.002 17.7 0.7 0.0029 17.2 0.5 1.2 1 0 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) DZR PF12773.2 gi|529078841|ref|YP_008377844.1| - 0.0032 17.2 1.2 0.0047 16.7 0.8 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-P11 PF03854.9 gi|529078841|ref|YP_008377844.1| - 0.0056 16.1 0.0 0.0084 15.5 0.0 1.2 1 0 0 1 1 1 1 P-11 zinc finger Ribosomal_L37e PF01907.14 gi|529078841|ref|YP_008377844.1| - 0.0063 16.2 0.5 0.0096 15.6 0.3 1.2 1 0 0 1 1 1 1 Ribosomal protein L37e DNA_ligase_ZBD PF03119.11 gi|529078841|ref|YP_008377844.1| - 0.016 14.8 2.3 0.024 14.3 0.3 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain PIN PF01850.16 gi|529078841|ref|YP_008377844.1| - 0.031 14.6 1.4 0.17 12.1 1.0 1.9 1 1 0 1 1 1 0 PIN domain DUF4411 PF14367.1 gi|529078841|ref|YP_008377844.1| - 0.034 13.8 0.1 0.083 12.6 0.0 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4411) zf-NADH-PPase PF09297.6 gi|529078841|ref|YP_008377844.1| - 0.037 13.5 2.6 3.8 7.1 0.3 2.5 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-RING_5 PF14634.1 gi|529078841|ref|YP_008377844.1| - 0.061 13.0 1.8 0.088 12.5 1.3 1.3 1 0 0 1 1 1 0 zinc-RING finger domain Prok-RING_1 PF14446.1 gi|529078841|ref|YP_008377844.1| - 0.068 12.9 0.7 0.11 12.2 0.5 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Zn-ribbon_8 PF09723.5 gi|529078841|ref|YP_008377844.1| - 0.07 13.0 5.5 0.97 9.4 3.8 2.3 1 1 0 1 1 1 0 Zinc ribbon domain zf-C2H2 PF00096.21 gi|529078841|ref|YP_008377844.1| - 0.071 13.4 2.8 2.6 8.5 0.2 2.3 1 1 1 2 2 2 0 Zinc finger, C2H2 type zinc-ribbons_6 PF07191.7 gi|529078841|ref|YP_008377844.1| - 0.071 12.9 0.5 0.12 12.1 0.3 1.3 1 0 0 1 1 1 0 zinc-ribbons UPF0278 PF08745.6 gi|529078841|ref|YP_008377844.1| - 0.08 12.1 0.3 0.15 11.2 0.2 1.5 1 1 0 1 1 1 0 UPF0278 family zf-ribbon_3 PF13248.1 gi|529078841|ref|YP_008377844.1| - 0.097 11.9 3.0 0.17 11.1 2.1 1.4 1 0 0 1 1 1 0 zinc-ribbon domain NOB1_Zn_bind PF08772.6 gi|529078841|ref|YP_008377844.1| - 0.11 12.3 0.4 0.2 11.5 0.1 1.5 2 0 0 2 2 1 0 Nin one binding (NOB1) Zn-ribbon like HypA PF01155.14 gi|529078841|ref|YP_008377844.1| - 0.11 12.1 1.6 0.22 11.2 1.1 1.5 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Prok-RING_4 PF14447.1 gi|529078841|ref|YP_008377844.1| - 0.13 11.8 2.2 0.24 10.9 1.5 1.5 1 0 0 1 1 1 0 Prokaryotic RING finger family 4 zf-C2H2_4 PF13894.1 gi|529078841|ref|YP_008377844.1| - 0.13 12.6 2.1 14 6.2 0.1 2.4 1 1 1 2 2 2 0 C2H2-type zinc finger zinc_ribbon_2 PF13240.1 gi|529078841|ref|YP_008377844.1| - 0.26 10.8 3.4 0.88 9.1 2.4 2.0 1 1 0 1 1 1 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|529078841|ref|YP_008377844.1| - 0.68 9.6 6.5 2.4 7.9 0.2 3.1 3 0 0 3 3 3 0 Nudix N-terminal zf-C2HC_2 PF13913.1 gi|529078841|ref|YP_008377844.1| - 1 9.1 8.0 0.38 10.4 0.5 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type RHH_1 PF01402.16 gi|529078842|ref|YP_008377845.1| - 0.057 13.3 0.1 0.077 12.9 0.1 1.3 1 1 0 1 1 1 0 Ribbon-helix-helix protein, copG family DUF4250 PF14056.1 gi|529078842|ref|YP_008377845.1| - 0.12 12.0 0.2 0.17 11.6 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4250) DUF3650 PF12368.3 gi|529078842|ref|YP_008377845.1| - 0.15 11.5 0.9 0.23 10.9 0.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3650) Abi PF02517.11 gi|529078843|ref|YP_008377846.1| - 1.6e-15 56.9 4.8 1.6e-15 56.9 3.3 2.1 2 1 0 2 2 2 1 CAAX protease self-immunity DUF3522 PF12036.3 gi|529078843|ref|YP_008377846.1| - 0.25 11.0 3.7 6.6 6.4 0.1 2.5 1 1 0 2 2 2 0 Protein of unknown function (DUF3522) DUF4131 PF13567.1 gi|529078843|ref|YP_008377846.1| - 0.43 9.9 7.9 0.2 11.0 0.3 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) ABC_membrane PF00664.18 gi|529078843|ref|YP_008377846.1| - 6.7 6.0 9.9 0.16 11.3 0.2 2.6 2 1 1 3 3 3 0 ABC transporter transmembrane region Yip1 PF04893.12 gi|529078844|ref|YP_008377847.1| - 0.0013 18.3 9.2 0.0017 17.8 6.4 1.2 1 0 0 1 1 1 1 Yip1 domain Peptidase_M50 PF02163.17 gi|529078844|ref|YP_008377847.1| - 0.0035 16.3 0.5 0.0053 15.7 0.4 1.3 1 1 0 1 1 1 1 Peptidase family M50 BCD PF15461.1 gi|529078844|ref|YP_008377847.1| - 0.009 15.4 1.8 0.014 14.8 1.2 1.4 1 0 0 1 1 1 1 Beta-carotene 15,15'-dioxygenase DUF3487 PF11990.3 gi|529078844|ref|YP_008377847.1| - 0.36 10.2 6.7 0.17 11.2 2.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3487) DUF4131 PF13567.1 gi|529078844|ref|YP_008377847.1| - 0.89 8.9 7.3 4.5 6.6 5.1 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) IMPDH PF00478.20 gi|529078846|ref|YP_008377849.1| - 1.3e-103 346.5 2.5 2.1e-103 345.9 1.7 1.3 1 1 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain NMO PF03060.10 gi|529078846|ref|YP_008377849.1| - 6.4e-10 38.6 13.9 3.5e-08 32.9 9.6 2.5 1 1 0 1 1 1 1 Nitronate monooxygenase FMN_dh PF01070.13 gi|529078846|ref|YP_008377849.1| - 1.5e-08 33.9 8.6 1.8e-08 33.6 4.6 1.8 1 1 1 2 2 2 1 FMN-dependent dehydrogenase His_biosynth PF00977.16 gi|529078846|ref|YP_008377849.1| - 2.9e-05 23.4 2.3 0.024 13.8 0.1 2.8 2 1 1 3 3 3 2 Histidine biosynthesis protein DHO_dh PF01180.16 gi|529078846|ref|YP_008377849.1| - 0.00018 20.5 0.7 0.00018 20.5 0.5 1.8 2 1 1 3 3 3 1 Dihydroorotate dehydrogenase Glu_synthase PF01645.12 gi|529078846|ref|YP_008377849.1| - 0.0011 17.9 0.9 0.0019 17.1 0.6 1.4 1 0 0 1 1 1 1 Conserved region in glutamate synthase ThiG PF05690.9 gi|529078846|ref|YP_008377849.1| - 0.0037 16.3 1.3 0.0037 16.3 0.9 2.1 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG PcrB PF01884.12 gi|529078846|ref|YP_008377849.1| - 0.0046 16.2 9.0 0.022 14.0 0.2 3.0 2 1 1 3 3 3 1 PcrB family Dus PF01207.12 gi|529078846|ref|YP_008377849.1| - 0.0085 14.9 0.1 0.0085 14.9 0.1 1.6 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) TMP-TENI PF02581.12 gi|529078846|ref|YP_008377849.1| - 0.027 13.5 3.8 0.16 11.0 1.9 2.5 1 1 1 2 2 2 0 Thiamine monophosphate synthase/TENI DUF1269 PF06897.7 gi|529078846|ref|YP_008377849.1| - 0.028 14.4 0.1 0.055 13.5 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1269) PepSY_2 PF13670.1 gi|529078846|ref|YP_008377849.1| - 0.031 14.1 0.2 0.1 12.5 0.0 1.9 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain NanE PF04131.9 gi|529078846|ref|YP_008377849.1| - 0.09 11.7 3.2 5.3 5.9 0.1 3.1 1 1 2 3 3 3 0 Putative N-acetylmannosamine-6-phosphate epimerase SecD_SecF PF02355.11 gi|529078847|ref|YP_008377850.1| - 3.6e-27 94.7 14.4 3.6e-27 94.7 10.0 1.4 2 0 0 2 2 2 1 Protein export membrane protein Sec_GG PF07549.9 gi|529078847|ref|YP_008377850.1| - 1.1e-06 27.5 0.0 3.1e-06 26.1 0.0 1.9 1 0 0 1 1 1 1 SecD/SecF GG Motif MMPL PF03176.10 gi|529078847|ref|YP_008377850.1| - 0.14 10.7 21.8 0.064 11.9 12.9 1.8 2 0 0 2 2 2 0 MMPL family ACR_tran PF00873.14 gi|529078847|ref|YP_008377850.1| - 2.1 5.6 20.2 2.7 5.2 6.5 2.2 1 1 1 2 2 2 0 AcrB/AcrD/AcrF family Patched PF02460.13 gi|529078847|ref|YP_008377850.1| - 3 5.6 15.0 5.8 4.6 10.2 1.4 1 1 0 1 1 1 0 Patched family SecD_SecF PF02355.11 gi|529078848|ref|YP_008377851.1| - 8.8e-18 64.1 3.0 1.9e-17 63.0 2.1 1.4 1 0 0 1 1 1 1 Protein export membrane protein MMPL PF03176.10 gi|529078848|ref|YP_008377851.1| - 5.6e-05 22.0 10.3 0.0001 21.1 7.1 1.3 1 0 0 1 1 1 1 MMPL family DUF2197 PF09963.4 gi|529078849|ref|YP_008377852.1| - 0.0014 18.5 1.0 0.66 9.9 0.1 2.1 2 0 0 2 2 2 2 Uncharacterized protein conserved in bacteria (DUF2197) zf-FPG_IleRS PF06827.9 gi|529078849|ref|YP_008377852.1| - 0.009 15.6 2.6 2.4 7.9 0.1 2.4 2 0 0 2 2 2 2 Zinc finger found in FPG and IleRS HypA PF01155.14 gi|529078849|ref|YP_008377852.1| - 0.02 14.5 1.2 0.022 14.4 0.8 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|529078849|ref|YP_008377852.1| - 0.034 13.9 3.6 0.091 12.5 2.5 1.7 1 1 0 1 1 1 0 Double zinc ribbon zf-H2C2_2 PF13465.1 gi|529078849|ref|YP_008377852.1| - 0.037 14.3 0.8 1 9.7 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger double domain zinc-ribbons_6 PF07191.7 gi|529078849|ref|YP_008377852.1| - 0.042 13.6 1.4 4.8 7.0 0.1 2.0 2 0 0 2 2 2 0 zinc-ribbons zf-HYPF PF07503.7 gi|529078849|ref|YP_008377852.1| - 0.048 13.0 0.4 0.048 13.0 0.3 2.0 2 0 0 2 2 2 0 HypF finger Sgf11 PF08209.6 gi|529078849|ref|YP_008377852.1| - 0.056 12.7 3.7 2.7 7.3 0.1 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Zn-ribbon_8 PF09723.5 gi|529078849|ref|YP_008377852.1| - 0.073 13.0 3.2 1.2 9.0 0.2 2.1 2 0 0 2 2 2 0 Zinc ribbon domain Desulfoferrod_N PF06397.7 gi|529078849|ref|YP_008377852.1| - 0.094 12.1 0.4 1.6 8.2 0.1 2.1 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain DUF2296 PF10058.4 gi|529078849|ref|YP_008377852.1| - 0.096 12.4 1.1 0.5 10.1 0.1 2.0 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) ATPase-cat_bd PF12156.3 gi|529078849|ref|YP_008377852.1| - 0.1 13.1 0.6 0.13 12.8 0.4 1.1 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase DUF2318 PF10080.4 gi|529078849|ref|YP_008377852.1| - 0.12 12.1 0.6 1.4 8.7 0.0 1.9 1 1 1 2 2 2 0 Predicted membrane protein (DUF2318) zf-B_box PF00643.19 gi|529078849|ref|YP_008377852.1| - 0.22 11.4 5.7 0.69 9.8 0.4 2.1 2 0 0 2 2 2 0 B-box zinc finger Zn_Tnp_IS1595 PF12760.2 gi|529078849|ref|YP_008377852.1| - 0.23 11.3 5.6 0.2 11.5 0.7 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain RRN7 PF11781.3 gi|529078849|ref|YP_008377852.1| - 0.26 10.8 4.8 5.5 6.5 0.2 2.2 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 LIM PF00412.17 gi|529078849|ref|YP_008377852.1| - 0.31 11.1 4.6 4.4 7.4 0.1 2.0 1 1 1 2 2 2 0 LIM domain Arc_trans_TRASH PF08394.5 gi|529078849|ref|YP_008377852.1| - 0.88 9.7 4.2 4 7.6 0.4 2.1 2 0 0 2 2 2 0 Archaeal TRASH domain OrfB_Zn_ribbon PF07282.6 gi|529078849|ref|YP_008377852.1| - 1.2 8.8 3.9 24 4.6 2.6 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-C2H2 PF00096.21 gi|529078849|ref|YP_008377852.1| - 2.3 8.7 4.5 20 5.7 0.8 2.1 2 0 0 2 2 2 0 Zinc finger, C2H2 type Elf1 PF05129.8 gi|529078849|ref|YP_008377852.1| - 8.7 6.1 6.3 17 5.2 0.7 2.0 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like Orn_Arg_deC_N PF02784.11 gi|529078850|ref|YP_008377853.1| - 4.3e-41 140.7 0.0 5.5e-41 140.4 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|529078850|ref|YP_008377853.1| - 7e-19 67.6 0.0 9.8e-19 67.1 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Peptidase_M20 PF01546.23 gi|529078851|ref|YP_008377854.1| - 3.2e-26 92.0 0.7 4e-26 91.7 0.5 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|529078851|ref|YP_008377854.1| - 3.8e-18 65.2 0.1 1.3e-17 63.5 0.0 1.9 2 0 0 2 2 2 1 Peptidase dimerisation domain Glyco_transf_21 PF13506.1 gi|529078852|ref|YP_008377855.1| - 5.2e-09 35.6 0.0 1e-08 34.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glycos_transf_2 PF00535.21 gi|529078852|ref|YP_008377855.1| - 7.9e-07 28.9 0.0 1.2e-06 28.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|529078852|ref|YP_008377855.1| - 8.7e-05 22.4 0.0 0.00012 21.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 HGTP_anticodon PF03129.15 gi|529078853|ref|YP_008377856.1| - 4.3e-19 68.2 0.1 9.4e-19 67.1 0.1 1.6 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.6 gi|529078853|ref|YP_008377856.1| - 7.4e-18 64.2 1.2 1.8e-17 62.9 0.8 1.7 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal tRNA-synt_2b PF00587.20 gi|529078853|ref|YP_008377856.1| - 1.6e-17 63.6 0.1 2.9e-17 62.7 0.1 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) DUF3386 PF11866.3 gi|529078853|ref|YP_008377856.1| - 0.027 13.6 0.1 0.2 10.8 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3386) AstE_AspA PF04952.9 gi|529078854|ref|YP_008377857.1| - 9.8e-13 47.6 0.0 1.3e-12 47.2 0.0 1.2 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Beta-Casp PF10996.3 gi|529078856|ref|YP_008377859.1| - 5.2e-32 110.4 0.0 1e-31 109.4 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|529078856|ref|YP_008377859.1| - 5.1e-22 78.4 2.4 9.6e-22 77.5 1.7 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|529078856|ref|YP_008377859.1| - 9.5e-14 50.9 0.0 2.6e-13 49.5 0.0 1.8 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|529078856|ref|YP_008377859.1| - 2.9e-10 39.9 0.2 8.4e-10 38.5 0.1 1.8 2 0 0 2 2 2 1 Beta-lactamase superfamily domain KH_2 PF07650.12 gi|529078856|ref|YP_008377859.1| - 5.6e-08 32.2 0.0 1e-06 28.1 0.0 2.4 2 0 0 2 2 2 1 KH domain KH_1 PF00013.24 gi|529078856|ref|YP_008377859.1| - 0.0002 20.9 0.1 0.0005 19.6 0.0 1.7 1 0 0 1 1 1 1 KH domain Lactamase_B_3 PF13483.1 gi|529078856|ref|YP_008377859.1| - 0.0012 18.5 0.0 0.0031 17.2 0.0 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_4 PF13083.1 gi|529078856|ref|YP_008377859.1| - 0.0021 17.6 0.0 0.0056 16.2 0.0 1.7 1 0 0 1 1 1 1 KH domain KH_3 PF13014.1 gi|529078856|ref|YP_008377859.1| - 0.059 13.0 0.1 0.15 11.7 0.1 1.7 1 0 0 1 1 1 0 KH domain Abhydrolase_6 PF12697.2 gi|529078857|ref|YP_008377860.1| - 1.2e-40 139.8 3.3 1.4e-40 139.5 2.3 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|529078857|ref|YP_008377860.1| - 5.7e-22 78.0 0.0 1.2e-20 73.6 0.0 2.1 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|529078857|ref|YP_008377860.1| - 1.1e-14 54.5 0.0 1.2e-12 47.9 0.0 2.1 1 1 0 2 2 2 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.3 gi|529078857|ref|YP_008377860.1| - 1.2e-09 37.9 0.3 2.9e-09 36.6 0.1 1.8 2 0 0 2 2 2 1 Putative lysophospholipase Peptidase_S9 PF00326.16 gi|529078857|ref|YP_008377860.1| - 0.00013 21.2 0.0 0.00044 19.5 0.0 2.1 1 1 1 2 2 2 1 Prolyl oligopeptidase family Abhydrolase_4 PF08386.5 gi|529078857|ref|YP_008377860.1| - 0.0027 17.5 0.0 0.26 11.2 0.0 2.4 2 0 0 2 2 2 1 TAP-like protein Tox-HNH-HHH PF15637.1 gi|529078857|ref|YP_008377860.1| - 0.089 12.5 0.0 0.19 11.4 0.0 1.5 1 0 0 1 1 1 0 HNH/Endo VII superfamily nuclease toxin with a HHH motif UPF0227 PF05728.7 gi|529078857|ref|YP_008377860.1| - 0.12 12.0 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0227) Glyco_hydro_43 PF04616.9 gi|529078858|ref|YP_008377861.1| - 2.9e-81 272.6 0.1 3.7e-81 272.3 0.1 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 43 Glyco_hyd_65N_2 PF14498.1 gi|529078859|ref|YP_008377862.1| - 4.2e-67 226.2 0.1 6e-67 225.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 65, N-terminal domain Glyco_hydro_65N PF03636.10 gi|529078859|ref|YP_008377862.1| - 0.088 12.1 0.0 0.15 11.3 0.0 1.3 1 0 0 1 1 1 0 Glycosyl hydrolase family 65, N-terminal domain Aldo_ket_red PF00248.16 gi|529078860|ref|YP_008377863.1| - 4.2e-74 248.9 0.0 4.7e-74 248.7 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family MF_alpha_N PF05436.6 gi|529078860|ref|YP_008377863.1| - 0.15 11.7 0.0 0.28 10.8 0.0 1.4 1 0 0 1 1 1 0 Mating factor alpha precursor N-terminus HhH-GPD PF00730.20 gi|529078861|ref|YP_008377864.1| - 1.1e-17 64.2 0.0 1.9e-17 63.5 0.0 1.4 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein EndIII_4Fe-2S PF10576.4 gi|529078861|ref|YP_008377864.1| - 0.00099 19.1 7.7 0.0012 18.9 4.6 1.7 2 0 0 2 2 2 1 Iron-sulfur binding domain of endonuclease III HHH PF00633.18 gi|529078861|ref|YP_008377864.1| - 0.0074 15.9 0.0 0.018 14.7 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif Trypan_glycop PF00913.14 gi|529078861|ref|YP_008377864.1| - 0.025 13.5 0.3 0.033 13.1 0.2 1.1 1 0 0 1 1 1 0 Trypanosome variant surface glycoprotein (A-type) EDR1 PF14381.1 gi|529078861|ref|YP_008377864.1| - 0.099 12.1 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 Ethylene-responsive protein kinase Le-CTR1 PRiA4_ORF3 PF07929.6 gi|529078861|ref|YP_008377864.1| - 0.13 11.6 0.3 4.3 6.7 0.1 2.5 2 0 0 2 2 2 0 Plasmid pRiA4b ORF-3-like protein HHH_5 PF14520.1 gi|529078861|ref|YP_008377864.1| - 0.42 10.8 2.5 3.3 7.9 1.6 2.4 2 1 0 2 2 2 0 Helix-hairpin-helix domain DUF371 PF04027.8 gi|529078862|ref|YP_008377865.1| - 2.4e-51 172.8 0.9 2.7e-51 172.6 0.6 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) DUF373 PF04123.8 gi|529078863|ref|YP_008377866.1| - 7e-96 321.2 9.0 8.4e-96 320.9 6.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF373) VBS PF08913.5 gi|529078864|ref|YP_008377867.1| - 0.027 14.7 2.7 0.8 9.9 0.2 2.6 2 0 0 2 2 2 0 Vinculin Binding Site Laminin_II PF06009.7 gi|529078864|ref|YP_008377867.1| - 0.23 11.2 30.5 0.11 12.2 8.3 3.2 1 1 1 3 3 3 0 Laminin Domain II Reo_sigmaC PF04582.7 gi|529078864|ref|YP_008377867.1| - 0.77 8.8 6.1 0.91 8.6 1.5 2.1 1 1 1 2 2 2 0 Reovirus sigma C capsid protein Glyco_hydro_2_N PF02837.13 gi|529078865|ref|YP_008377868.1| - 4.5e-10 39.3 0.0 8.2e-10 38.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, sugar binding domain Glyco_hydro_2 PF00703.16 gi|529078865|ref|YP_008377868.1| - 2.6e-07 31.0 0.0 7.1e-07 29.6 0.0 1.7 2 0 0 2 2 2 1 Glycosyl hydrolases family 2 BetaGal_dom4_5 PF13364.1 gi|529078865|ref|YP_008377868.1| - 0.06 13.6 0.0 0.13 12.5 0.0 1.5 1 0 0 1 1 1 0 Beta-galactosidase jelly roll domain Peptidase_S29 PF02907.10 gi|529078866|ref|YP_008377869.1| - 0.012 15.0 0.1 0.012 15.0 0.1 1.1 1 0 0 1 1 1 0 Hepatitis C virus NS3 protease ATP_bind_4 PF01902.12 gi|529078867|ref|YP_008377870.1| - 8.7e-58 195.2 0.0 2.1e-57 194.0 0.0 1.5 1 1 0 1 1 1 1 ATP-binding region QueC PF06508.8 gi|529078867|ref|YP_008377870.1| - 0.084 12.1 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC DUF3392 PF11872.3 gi|529078868|ref|YP_008377871.1| - 0.11 12.5 1.7 0.13 12.2 1.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3392) MRAP PF15183.1 gi|529078868|ref|YP_008377871.1| - 0.63 9.6 2.8 0.8 9.3 1.9 1.3 1 1 0 1 1 1 0 Melanocortin-2 receptor accessory protein family Y1_Tnp PF01797.11 gi|529078870|ref|YP_008377873.1| - 9.4e-31 106.1 0.0 2.3e-28 98.5 0.0 2.0 2 0 0 2 2 2 2 Transposase IS200 like OrfB_IS605 PF01385.14 gi|529078871|ref|YP_008377874.1| - 1.9e-63 213.9 0.0 2.4e-63 213.6 0.0 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|529078871|ref|YP_008377874.1| - 6.8e-17 60.8 0.6 1.3e-16 60.0 0.4 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain NTP_transferase PF00483.18 gi|529078872|ref|YP_008377875.1| - 3.8e-37 127.9 0.0 7.6e-37 126.9 0.0 1.4 2 0 0 2 2 2 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|529078872|ref|YP_008377875.1| - 5.6e-13 49.2 0.0 6.7e-13 49.0 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|529078872|ref|YP_008377875.1| - 0.0089 15.4 1.0 0.15 11.6 0.1 2.7 2 0 0 2 2 2 1 Bacterial transferase hexapeptide (six repeats) Ring_hydroxyl_A PF00848.14 gi|529078872|ref|YP_008377875.1| - 0.026 14.1 0.0 0.052 13.1 0.0 1.4 1 0 0 1 1 1 0 Ring hydroxylating alpha subunit (catalytic domain) IspD PF01128.14 gi|529078872|ref|YP_008377875.1| - 0.08 12.4 0.1 0.39 10.2 0.0 2.0 2 0 0 2 2 2 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase HTH_10 PF04967.7 gi|529078874|ref|YP_008377877.1| - 1e-21 76.2 0.0 1.6e-21 75.6 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Fe_dep_repress PF01325.14 gi|529078874|ref|YP_008377877.1| - 0.0077 16.1 0.0 0.02 14.8 0.0 1.7 1 1 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Sigma70_r4 PF04545.11 gi|529078874|ref|YP_008377877.1| - 0.03 13.6 0.0 0.064 12.5 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 MarR_2 PF12802.2 gi|529078874|ref|YP_008377877.1| - 0.041 13.5 0.0 0.093 12.4 0.0 1.6 1 0 0 1 1 1 0 MarR family Homeobox PF00046.24 gi|529078874|ref|YP_008377877.1| - 0.097 12.3 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 Homeobox domain PALP PF00291.20 gi|529078875|ref|YP_008377878.1| - 7.4e-51 173.1 1.4 8.3e-51 173.0 0.9 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DUF1508 PF07411.7 gi|529078876|ref|YP_008377879.1| - 7.8e-77 252.5 1.0 6.1e-18 63.9 0.0 5.2 5 0 0 5 5 5 5 Domain of unknown function (DUF1508) ATG16 PF08614.6 gi|529078876|ref|YP_008377879.1| - 0.01 15.7 0.7 0.027 14.2 0.3 1.7 2 0 0 2 2 2 1 Autophagy protein 16 (ATG16) Snf7 PF03357.16 gi|529078876|ref|YP_008377879.1| - 0.069 12.5 3.8 0.13 11.6 2.6 1.3 1 0 0 1 1 1 0 Snf7 Reo_sigmaC PF04582.7 gi|529078876|ref|YP_008377879.1| - 0.12 11.4 1.3 0.18 10.9 0.9 1.1 1 0 0 1 1 1 0 Reovirus sigma C capsid protein HlyIII PF03006.15 gi|529078876|ref|YP_008377879.1| - 0.21 10.9 7.1 0.37 10.1 3.4 1.9 1 1 1 2 2 2 0 Haemolysin-III related DivIC PF04977.10 gi|529078876|ref|YP_008377879.1| - 0.28 10.6 1.2 4.5 6.8 0.4 2.6 2 1 1 3 3 3 0 Septum formation initiator DUF1049 PF06305.6 gi|529078876|ref|YP_008377879.1| - 0.53 9.7 3.5 38 3.8 0.0 3.7 4 0 0 4 4 4 0 Protein of unknown function (DUF1049) IncA PF04156.9 gi|529078876|ref|YP_008377879.1| - 1.1 8.7 17.9 0.37 10.3 5.8 2.5 1 1 1 2 2 2 0 IncA protein DUF3040 PF11239.3 gi|529078876|ref|YP_008377879.1| - 1.6 8.8 14.9 1.4 8.9 4.3 3.3 2 1 1 3 3 3 0 Protein of unknown function (DUF3040) DCD PF06559.6 gi|529078877|ref|YP_008377880.1| - 1.2e-15 56.8 0.1 1.7e-13 49.7 0.0 2.1 1 1 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) dUTPase PF00692.14 gi|529078877|ref|YP_008377880.1| - 9.3e-14 51.0 0.0 1.4e-13 50.4 0.0 1.3 1 0 0 1 1 1 1 dUTPase Aldolase_2 PF10120.4 gi|529078878|ref|YP_008377881.1| - 5e-45 152.9 0.0 8e-45 152.2 0.0 1.3 1 0 0 1 1 1 1 Putative aldolase HTH_3 PF01381.17 gi|529078878|ref|YP_008377881.1| - 7.3e-07 28.9 0.1 1.5e-06 27.9 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_37 PF13744.1 gi|529078878|ref|YP_008377881.1| - 5.4e-05 22.9 0.0 0.00011 21.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|529078878|ref|YP_008377881.1| - 5.7e-05 23.2 0.7 5.7e-05 23.2 0.5 2.5 3 0 0 3 3 2 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|529078878|ref|YP_008377881.1| - 0.00088 18.5 1.1 0.0033 16.7 0.0 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_26 PF13443.1 gi|529078878|ref|YP_008377881.1| - 0.0011 19.1 0.0 0.0019 18.3 0.0 1.3 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_19 PF12844.2 gi|529078878|ref|YP_008377881.1| - 0.0011 18.9 0.0 0.0022 18.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|529078878|ref|YP_008377881.1| - 0.0052 16.1 0.0 0.012 14.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_38 PF13936.1 gi|529078878|ref|YP_008377881.1| - 0.01 15.3 0.0 0.024 14.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|529078878|ref|YP_008377881.1| - 0.016 14.8 0.1 0.052 13.2 0.0 1.9 2 0 0 2 2 2 0 Homeodomain-like domain MarR_2 PF12802.2 gi|529078878|ref|YP_008377881.1| - 0.028 14.1 0.8 0.13 11.9 0.0 2.5 3 0 0 3 3 3 0 MarR family Glyco_transf_28 PF03033.15 gi|529078878|ref|YP_008377881.1| - 0.05 13.3 0.6 0.16 11.6 0.1 2.1 2 0 0 2 2 2 0 Glycosyltransferase family 28 N-terminal domain DUF2481 PF10654.4 gi|529078878|ref|YP_008377881.1| - 0.051 13.2 0.0 0.078 12.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2481) HTH_Crp_2 PF13545.1 gi|529078878|ref|YP_008377881.1| - 0.092 12.5 0.1 0.32 10.8 0.0 2.0 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Methyltransf_31 PF13847.1 gi|529078879|ref|YP_008377882.1| - 1.2e-15 57.3 0.0 1.5e-15 57.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|529078879|ref|YP_008377882.1| - 7.2e-15 54.7 0.0 9.1e-15 54.4 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|529078879|ref|YP_008377882.1| - 8.7e-14 52.0 0.0 1.5e-13 51.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|529078879|ref|YP_008377882.1| - 4e-13 49.6 0.0 5.7e-13 49.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|529078879|ref|YP_008377882.1| - 2.2e-11 44.0 0.0 3.3e-11 43.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|529078879|ref|YP_008377882.1| - 8.5e-11 41.8 0.0 1.1e-10 41.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|529078879|ref|YP_008377882.1| - 5.1e-10 39.2 0.1 1e-09 38.2 0.0 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_26 PF13659.1 gi|529078879|ref|YP_008377882.1| - 1e-09 38.4 0.4 2e-09 37.5 0.3 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|529078879|ref|YP_008377882.1| - 6.5e-07 29.6 0.0 9.2e-07 29.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|529078879|ref|YP_008377882.1| - 5.4e-05 22.3 0.0 6.6e-05 22.0 0.0 1.1 1 0 0 1 1 1 1 Putative methyltransferase FtsJ PF01728.14 gi|529078879|ref|YP_008377882.1| - 0.001 19.1 0.0 0.0053 16.7 0.0 1.9 1 1 0 1 1 1 1 FtsJ-like methyltransferase CMAS PF02353.15 gi|529078879|ref|YP_008377882.1| - 0.008 15.2 0.0 0.012 14.7 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase GCD14 PF08704.5 gi|529078879|ref|YP_008377882.1| - 0.012 15.1 0.0 0.016 14.7 0.0 1.1 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit MTS PF05175.9 gi|529078879|ref|YP_008377882.1| - 0.012 14.9 0.0 0.02 14.2 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase small domain RrnaAD PF00398.15 gi|529078879|ref|YP_008377882.1| - 0.03 13.3 0.0 0.086 11.8 0.0 1.6 2 0 0 2 2 2 0 Ribosomal RNA adenine dimethylase Thi4 PF01946.12 gi|529078881|ref|YP_008377884.1| - 9.5e-63 211.3 0.5 5.4e-50 169.6 0.1 2.1 1 1 1 2 2 2 2 Thi4 family DAO PF01266.19 gi|529078881|ref|YP_008377884.1| - 4.9e-10 38.8 0.5 8.2e-07 28.2 0.1 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|529078881|ref|YP_008377884.1| - 9.2e-10 38.0 0.0 1.6e-09 37.3 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|529078881|ref|YP_008377884.1| - 2.3e-09 36.8 0.2 3.3e-09 36.3 0.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|529078881|ref|YP_008377884.1| - 2.4e-09 36.5 1.9 7.9e-08 31.5 0.1 2.4 1 1 2 3 3 3 1 FAD binding domain HI0933_like PF03486.9 gi|529078881|ref|YP_008377884.1| - 1.2e-08 33.8 0.1 1.7e-08 33.3 0.1 1.2 1 0 0 1 1 1 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|529078881|ref|YP_008377884.1| - 1.1e-07 31.7 0.1 2.5e-07 30.6 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|529078881|ref|YP_008377884.1| - 2e-06 27.8 0.0 3.4e-06 27.0 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|529078881|ref|YP_008377884.1| - 2.6e-05 24.3 0.1 4.5e-05 23.5 0.0 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|529078881|ref|YP_008377884.1| - 3.1e-05 22.8 0.1 0.034 12.7 0.0 2.2 2 0 0 2 2 2 2 Tryptophan halogenase Pyr_redox PF00070.22 gi|529078881|ref|YP_008377884.1| - 6.5e-05 23.2 0.1 0.0002 21.7 0.1 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|529078881|ref|YP_008377884.1| - 0.00041 20.1 0.4 0.001 18.8 0.1 1.8 2 0 0 2 2 2 1 FAD-NAD(P)-binding Lycopene_cycl PF05834.7 gi|529078881|ref|YP_008377884.1| - 0.00053 19.0 0.1 0.019 13.9 0.0 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein GIDA PF01134.17 gi|529078881|ref|YP_008377884.1| - 0.0019 17.1 0.1 0.0031 16.4 0.1 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Amino_oxidase PF01593.19 gi|529078881|ref|YP_008377884.1| - 0.0019 17.3 0.0 0.0029 16.7 0.0 1.2 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_7 PF13241.1 gi|529078881|ref|YP_008377884.1| - 0.0036 17.5 0.0 0.0071 16.5 0.0 1.6 1 1 0 1 1 1 1 Putative NAD(P)-binding Shikimate_DH PF01488.15 gi|529078881|ref|YP_008377884.1| - 0.025 14.6 0.0 0.14 12.2 0.0 1.9 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase UPF0126 PF03458.8 gi|529078882|ref|YP_008377885.1| - 3.9e-36 122.5 27.1 3.7e-19 68.1 6.2 2.6 2 1 0 2 2 2 2 UPF0126 domain CheC PF04509.7 gi|529078883|ref|YP_008377886.1| - 2.3e-14 52.7 0.1 5.2e-14 51.6 0.0 1.6 1 0 0 1 1 1 1 CheC-like family CheX PF13690.1 gi|529078883|ref|YP_008377886.1| - 0.00024 20.9 0.1 0.0004 20.1 0.0 1.4 1 0 0 1 1 1 1 Chemotaxis phosphatase CheX DUF137 PF02006.11 gi|529078884|ref|YP_008377887.1| - 5.6e-74 247.3 1.8 7.1e-74 247.0 1.3 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF137 Phage_GPD PF05954.6 gi|529078884|ref|YP_008377887.1| - 0.026 13.7 0.0 0.049 12.8 0.0 1.5 1 1 0 1 1 1 0 Phage late control gene D protein (GPD) OrfB_IS605 PF01385.14 gi|529078886|ref|YP_008377889.1| - 8.1e-58 195.4 0.1 1.1e-57 195.1 0.1 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|529078886|ref|YP_008377889.1| - 7.5e-19 67.1 0.2 1.4e-18 66.2 0.1 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|529078886|ref|YP_008377889.1| - 0.0057 15.9 0.0 0.013 14.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain GHMP_kinases_N PF00288.21 gi|529078887|ref|YP_008377890.1| - 1.9e-09 37.4 1.1 4.1e-09 36.3 0.8 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain UPF0175 PF03683.8 gi|529078888|ref|YP_008377891.1| - 3.5e-13 48.8 1.0 5e-13 48.3 0.7 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) RHH_1 PF01402.16 gi|529078888|ref|YP_008377891.1| - 0.0078 16.0 1.4 0.016 15.0 0.2 2.2 2 1 2 4 4 4 1 Ribbon-helix-helix protein, copG family ZapA PF05164.8 gi|529078888|ref|YP_008377891.1| - 0.15 12.0 1.3 2.1 8.3 0.0 2.0 1 1 1 2 2 2 0 Cell division protein ZapA tRNA-synt_2 PF00152.15 gi|529078891|ref|YP_008377894.1| - 1e-87 294.1 0.0 1.3e-87 293.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|529078891|ref|YP_008377894.1| - 1.6e-15 56.6 0.2 2.7e-15 55.9 0.1 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|529078891|ref|YP_008377894.1| - 0.0047 16.1 0.1 0.053 12.7 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) HTH_AsnC-type PF13404.1 gi|529078892|ref|YP_008377895.1| - 1.7e-11 43.4 0.8 3.9e-11 42.2 0.5 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|529078892|ref|YP_008377895.1| - 2e-11 43.0 0.0 3.6e-11 42.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.14 gi|529078892|ref|YP_008377895.1| - 2.3e-07 30.6 0.1 5.8e-07 29.3 0.0 1.6 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.7 gi|529078892|ref|YP_008377895.1| - 3.1e-06 26.7 0.0 9.1e-06 25.2 0.0 1.8 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|529078892|ref|YP_008377895.1| - 0.00011 21.8 0.1 0.00024 20.7 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|529078892|ref|YP_008377895.1| - 0.00017 21.3 0.0 0.00036 20.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|529078892|ref|YP_008377895.1| - 0.00017 21.0 0.1 0.00034 20.0 0.0 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_38 PF13936.1 gi|529078892|ref|YP_008377895.1| - 0.0014 18.1 0.4 0.0059 16.1 0.1 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|529078892|ref|YP_008377895.1| - 0.0028 17.2 0.0 0.0069 15.9 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_IclR PF09339.5 gi|529078892|ref|YP_008377895.1| - 0.0032 17.0 0.1 0.0086 15.6 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|529078892|ref|YP_008377895.1| - 0.0054 16.1 0.1 0.016 14.6 0.1 1.8 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.1 gi|529078892|ref|YP_008377895.1| - 0.012 14.7 0.2 0.023 13.8 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 MarR PF01047.17 gi|529078892|ref|YP_008377895.1| - 0.013 15.2 0.0 0.023 14.4 0.0 1.4 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.15 gi|529078892|ref|YP_008377895.1| - 0.017 15.2 0.0 0.037 14.1 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_5 PF01022.15 gi|529078892|ref|YP_008377895.1| - 0.023 14.3 0.0 0.037 13.7 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Sigma70_r4 PF04545.11 gi|529078892|ref|YP_008377895.1| - 0.03 13.6 0.3 0.085 12.1 0.1 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 GntR PF00392.16 gi|529078892|ref|YP_008377895.1| - 0.038 13.4 0.1 0.15 11.5 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_28 PF13518.1 gi|529078892|ref|YP_008377895.1| - 0.044 13.7 0.0 0.085 12.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|529078892|ref|YP_008377895.1| - 0.045 13.9 0.0 0.096 12.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix HTH_1 PF00126.22 gi|529078892|ref|YP_008377895.1| - 0.046 13.4 0.2 0.082 12.6 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family AsnC_trans_reg PF01037.16 gi|529078892|ref|YP_008377895.1| - 0.052 13.2 0.4 0.5 10.1 0.0 2.1 2 0 0 2 2 2 0 AsnC family HrcA_DNA-bdg PF03444.10 gi|529078892|ref|YP_008377895.1| - 0.055 12.9 0.0 0.11 12.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_10 PF04967.7 gi|529078892|ref|YP_008377895.1| - 0.071 12.6 0.1 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_27 PF13463.1 gi|529078892|ref|YP_008377895.1| - 0.072 13.4 0.1 0.13 12.5 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Put_DNA-bind_N PF06971.8 gi|529078892|ref|YP_008377895.1| - 0.073 12.8 0.1 0.16 11.7 0.1 1.5 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus EAP30 PF04157.11 gi|529078892|ref|YP_008377895.1| - 0.14 11.3 0.0 0.22 10.6 0.0 1.2 1 0 0 1 1 1 0 EAP30/Vps36 family TrkA_N PF02254.13 gi|529078893|ref|YP_008377896.1| - 7.2e-08 32.4 2.5 9.3e-08 32.0 1.7 1.2 1 0 0 1 1 1 1 TrkA-N domain MmoB_DmpM PF02406.12 gi|529078893|ref|YP_008377896.1| - 0.029 14.3 0.1 0.049 13.6 0.0 1.4 1 0 0 1 1 1 0 MmoB/DmpM family DUF552 PF04472.7 gi|529078893|ref|YP_008377896.1| - 0.049 13.5 0.3 0.12 12.2 0.1 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF552) AA_permease_2 PF13520.1 gi|529078894|ref|YP_008377897.1| - 6.7e-45 153.3 45.6 8.7e-45 153.0 31.6 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|529078894|ref|YP_008377897.1| - 4.8e-41 140.6 44.3 6e-41 140.2 30.7 1.1 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.21 gi|529078894|ref|YP_008377897.1| - 3.1e-10 40.3 9.9 5.5e-08 33.0 0.9 2.5 2 0 0 2 2 2 2 Universal stress protein family SURF4 PF02077.10 gi|529078894|ref|YP_008377897.1| - 0.016 14.5 1.0 0.016 14.5 0.7 1.9 2 0 0 2 2 2 0 SURF4 family Phage_HK97_TLTM PF06120.6 gi|529078894|ref|YP_008377897.1| - 0.35 10.1 1.3 0.84 8.9 0.1 2.0 2 0 0 2 2 2 0 Tail length tape measure protein Topoisom_bac PF01131.15 gi|529078895|ref|YP_008377898.1| - 7.7e-116 387.2 0.0 9.5e-116 386.9 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase zf-C4_Topoisom PF01396.14 gi|529078895|ref|YP_008377898.1| - 1e-19 69.7 2.5 1.7e-14 53.0 0.8 4.3 5 0 0 5 5 5 2 Topoisomerase DNA binding C4 zinc finger Toprim PF01751.17 gi|529078895|ref|YP_008377898.1| - 4.5e-18 65.0 0.0 8.9e-18 64.1 0.0 1.5 1 0 0 1 1 1 1 Toprim domain HHH_5 PF14520.1 gi|529078895|ref|YP_008377898.1| - 1.5e-08 34.6 2.6 6.8e-08 32.5 0.5 3.0 2 1 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.18 gi|529078895|ref|YP_008377898.1| - 0.00044 19.7 0.0 0.0013 18.2 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|529078895|ref|YP_008377898.1| - 0.0024 17.7 0.0 0.0079 16.0 0.0 1.8 2 0 0 2 2 2 1 Pathogenicity locus Toprim_4 PF13662.1 gi|529078895|ref|YP_008377898.1| - 0.01 15.8 0.1 0.045 13.7 0.1 2.2 1 0 0 1 1 1 0 Toprim domain zinc_ribbon_2 PF13240.1 gi|529078895|ref|YP_008377898.1| - 0.12 11.8 1.7 11 5.5 0.2 3.0 2 1 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|529078895|ref|YP_008377898.1| - 0.25 11.1 4.9 2.1 8.2 0.7 2.9 3 0 0 3 3 3 0 Double zinc ribbon Ogr_Delta PF04606.7 gi|529078895|ref|YP_008377898.1| - 5.9 6.6 10.0 0.35 10.5 0.1 3.0 3 0 0 3 3 3 0 Ogr/Delta-like zinc finger GatB_N PF02934.10 gi|529078897|ref|YP_008377900.1| - 8.7e-111 369.4 0.0 1.3e-110 368.8 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|529078897|ref|YP_008377900.1| - 8.9e-40 135.8 0.0 1.4e-39 135.2 0.0 1.3 1 0 0 1 1 1 1 GatB domain Striatin PF08232.7 gi|529078899|ref|YP_008377902.1| - 0.083 13.2 1.3 0.097 12.9 0.9 1.0 1 0 0 1 1 1 0 Striatin family Spc24 PF08286.6 gi|529078899|ref|YP_008377902.1| - 0.58 9.8 3.9 1.6 8.4 2.7 1.7 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 SlyX PF04102.7 gi|529078899|ref|YP_008377902.1| - 0.88 9.9 3.9 0.27 11.6 0.7 1.6 2 0 0 2 2 2 0 SlyX FlaC_arch PF05377.6 gi|529078899|ref|YP_008377902.1| - 2.5 8.0 4.8 0.78 9.6 0.6 2.1 2 2 0 2 2 2 0 Flagella accessory protein C (FlaC) Tropomyosin_1 PF12718.2 gi|529078899|ref|YP_008377902.1| - 4.9 6.9 9.2 11 5.9 6.4 1.5 1 1 0 1 1 1 0 Tropomyosin like SMC_N PF02463.14 gi|529078900|ref|YP_008377903.1| - 1.9e-51 174.4 49.7 5.9e-31 107.4 0.1 3.0 2 2 0 2 2 2 2 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.8 gi|529078900|ref|YP_008377903.1| - 1.6e-29 102.2 0.0 5.2e-29 100.6 0.0 2.0 1 0 0 1 1 1 1 SMC proteins Flexible Hinge Domain AAA_13 PF13166.1 gi|529078900|ref|YP_008377903.1| - 1.4e-12 46.9 105.7 1.1e-06 27.5 18.6 6.1 3 2 3 6 6 6 5 AAA domain Reo_sigmaC PF04582.7 gi|529078900|ref|YP_008377903.1| - 9.6e-12 44.7 25.6 0.00053 19.2 0.1 5.9 2 2 6 8 8 8 6 Reovirus sigma C capsid protein AAA_21 PF13304.1 gi|529078900|ref|YP_008377903.1| - 1.5e-10 41.5 0.0 1.9e-05 24.8 0.0 4.7 4 2 0 4 4 4 2 AAA domain IncA PF04156.9 gi|529078900|ref|YP_008377903.1| - 1e-07 31.7 160.0 0.026 14.1 8.2 8.3 2 2 6 8 8 8 5 IncA protein AAA_29 PF13555.1 gi|529078900|ref|YP_008377903.1| - 1.3e-06 27.8 0.0 3.2e-06 26.5 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain Myosin_tail_1 PF01576.14 gi|529078900|ref|YP_008377903.1| - 2.1e-06 25.8 162.2 0.00057 17.7 57.7 2.3 2 0 0 2 2 2 2 Myosin tail ATG16 PF08614.6 gi|529078900|ref|YP_008377903.1| - 9.2e-05 22.3 133.3 0.00085 19.2 10.7 8.7 2 2 4 7 7 7 3 Autophagy protein 16 (ATG16) CENP-F_leu_zip PF10473.4 gi|529078900|ref|YP_008377903.1| - 0.00012 21.9 156.7 0.0099 15.7 5.9 8.3 2 2 7 9 9 9 3 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF3584 PF12128.3 gi|529078900|ref|YP_008377903.1| - 0.00014 19.4 137.2 0.002 15.5 39.4 4.4 2 2 2 4 4 4 3 Protein of unknown function (DUF3584) AAA_23 PF13476.1 gi|529078900|ref|YP_008377903.1| - 0.00046 20.5 137.2 0.13 12.6 44.7 7.7 2 2 2 4 4 2 1 AAA domain Mnd1 PF03962.10 gi|529078900|ref|YP_008377903.1| - 0.00069 19.3 123.9 0.012 15.2 4.6 9.0 2 2 6 8 8 7 5 Mnd1 family TMF_DNA_bd PF12329.3 gi|529078900|ref|YP_008377903.1| - 0.00084 19.1 7.9 0.00084 19.1 5.5 12.3 3 2 10 13 13 12 5 TATA element modulatory factor 1 DNA binding APG6 PF04111.7 gi|529078900|ref|YP_008377903.1| - 0.0011 18.0 147.9 0.16 10.9 15.1 7.6 2 2 5 7 7 7 5 Autophagy protein Apg6 EzrA PF06160.7 gi|529078900|ref|YP_008377903.1| - 0.0018 16.5 13.3 0.0018 16.5 9.2 5.7 2 2 3 5 5 5 4 Septation ring formation regulator, EzrA Filament PF00038.16 gi|529078900|ref|YP_008377903.1| - 0.002 17.6 8.1 0.002 17.6 5.6 6.8 2 2 6 8 8 6 5 Intermediate filament protein Fib_alpha PF08702.5 gi|529078900|ref|YP_008377903.1| - 0.0026 17.9 5.2 0.0026 17.9 3.6 7.2 2 2 5 8 8 8 2 Fibrinogen alpha/beta chain family Laminin_I PF06008.9 gi|529078900|ref|YP_008377903.1| - 0.0029 16.9 5.2 0.0029 16.9 3.6 6.7 2 2 3 6 6 4 1 Laminin Domain I TBPIP PF07106.8 gi|529078900|ref|YP_008377903.1| - 0.012 15.2 110.5 0.33 10.4 6.9 8.5 2 2 6 9 9 9 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Spc7 PF08317.6 gi|529078900|ref|YP_008377903.1| - 0.048 12.3 122.6 0.18 10.4 13.4 6.9 2 2 4 6 6 6 0 Spc7 kinetochore protein Baculo_PEP_C PF04513.7 gi|529078900|ref|YP_008377903.1| - 0.15 11.8 32.6 0.39 10.5 0.0 7.5 4 2 2 7 7 7 0 Baculovirus polyhedron envelope protein, PEP, C terminus BLOC1_2 PF10046.4 gi|529078900|ref|YP_008377903.1| - 0.22 11.7 0.1 0.22 11.7 0.0 10.8 5 4 6 11 11 11 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 MscS_porin PF12795.2 gi|529078900|ref|YP_008377903.1| - 0.95 8.7 115.7 0.017 14.4 20.3 5.3 3 2 2 5 5 5 0 Mechanosensitive ion channel porin domain NPV_P10 PF05531.7 gi|529078900|ref|YP_008377903.1| - 2.1 8.6 47.6 0.27 11.5 1.5 9.3 4 2 3 7 7 7 0 Nucleopolyhedrovirus P10 protein AAA_15 PF13175.1 gi|529078900|ref|YP_008377903.1| - 2.1 7.2 24.3 0.75 8.7 10.3 3.6 3 1 0 3 3 2 0 AAA ATPase domain DUF869 PF05911.6 gi|529078900|ref|YP_008377903.1| - 6.3 4.8 124.9 0.57 8.3 10.8 6.4 2 2 3 6 6 6 0 Plant protein of unknown function (DUF869) FliD_N PF02465.13 gi|529078900|ref|YP_008377903.1| - 9.7 6.6 18.7 1.1 9.6 0.6 6.8 4 2 4 8 8 7 0 Flagellar hook-associated protein 2 N-terminus ScpA_ScpB PF02616.9 gi|529078901|ref|YP_008377904.1| - 3.9e-27 95.3 0.0 5.9e-27 94.8 0.0 1.2 1 0 0 1 1 1 1 ScpA/B protein MIS13 PF08202.6 gi|529078901|ref|YP_008377904.1| - 0.082 11.9 0.3 0.12 11.4 0.2 1.2 1 0 0 1 1 1 0 Mis12-Mtw1 protein family Mem_trans PF03547.13 gi|529078903|ref|YP_008377906.1| - 9e-26 90.0 18.1 3.4e-14 51.9 2.5 2.1 1 1 1 2 2 2 2 Membrane transport protein Pribosyltran PF00156.22 gi|529078905|ref|YP_008377908.1| - 3.1e-19 68.9 0.0 5.4e-19 68.1 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain DUF3984 PF13136.1 gi|529078905|ref|YP_008377908.1| - 0.003 16.8 0.1 0.004 16.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3984) UPRTase PF14681.1 gi|529078905|ref|YP_008377908.1| - 0.017 14.3 0.0 0.024 13.8 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase Abhydrolase_5 PF12695.2 gi|529078906|ref|YP_008377909.1| - 4.2e-19 68.7 0.0 7.5e-19 67.9 0.0 1.4 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|529078906|ref|YP_008377909.1| - 4.4e-16 59.4 2.1 6.4e-16 58.9 1.4 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|529078906|ref|YP_008377909.1| - 3.6e-11 42.6 0.0 1.7e-05 24.1 0.0 2.3 1 1 0 2 2 2 2 Prolyl oligopeptidase family DLH PF01738.13 gi|529078906|ref|YP_008377909.1| - 2.9e-08 33.2 0.0 0.00014 21.2 0.0 2.4 2 1 0 2 2 2 2 Dienelactone hydrolase family Abhydrolase_1 PF00561.15 gi|529078906|ref|YP_008377909.1| - 0.0014 18.2 0.1 0.1 12.1 0.1 2.1 1 1 0 2 2 2 1 alpha/beta hydrolase fold Esterase PF00756.15 gi|529078906|ref|YP_008377909.1| - 0.0016 17.9 0.0 0.0037 16.7 0.0 1.5 2 0 0 2 2 2 1 Putative esterase Abhydrolase_3 PF07859.8 gi|529078906|ref|YP_008377909.1| - 0.0042 16.6 0.0 0.0078 15.8 0.0 1.4 1 0 0 1 1 1 1 alpha/beta hydrolase fold Thioesterase PF00975.15 gi|529078906|ref|YP_008377909.1| - 0.022 14.9 0.2 0.04 14.1 0.2 1.6 1 1 0 1 1 1 0 Thioesterase domain Lipase_3 PF01764.20 gi|529078906|ref|YP_008377909.1| - 0.058 13.0 0.0 0.094 12.3 0.0 1.2 1 0 0 1 1 1 0 Lipase (class 3) PGAP1 PF07819.8 gi|529078906|ref|YP_008377909.1| - 0.12 11.9 0.2 0.21 11.1 0.1 1.5 1 1 0 1 1 1 0 PGAP1-like protein Ser_hydrolase PF06821.8 gi|529078906|ref|YP_008377909.1| - 0.18 11.3 0.0 0.32 10.5 0.0 1.4 1 0 0 1 1 1 0 Serine hydrolase PhzC-PhzF PF02567.11 gi|529078907|ref|YP_008377910.1| - 3.9e-68 229.6 0.1 4.9e-68 229.3 0.1 1.0 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein DAP_epimerase PF01678.14 gi|529078907|ref|YP_008377910.1| - 1.2e-05 25.2 0.2 0.00099 19.0 0.0 2.3 2 0 0 2 2 2 2 Diaminopimelate epimerase Pro_racemase PF05544.6 gi|529078907|ref|YP_008377910.1| - 0.023 13.5 0.0 0.037 12.8 0.0 1.2 1 0 0 1 1 1 0 Proline racemase Pyridoxal_deC PF00282.14 gi|529078908|ref|YP_008377911.1| - 6.8e-24 84.0 0.0 1e-23 83.4 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.14 gi|529078908|ref|YP_008377911.1| - 3.1e-10 39.3 0.0 3.5e-10 39.1 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|529078908|ref|YP_008377911.1| - 2e-07 30.3 0.0 3.9e-07 29.3 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class I and II SHMT PF00464.14 gi|529078908|ref|YP_008377911.1| - 0.013 13.9 0.0 0.03 12.7 0.0 1.6 1 1 0 1 1 1 0 Serine hydroxymethyltransferase Abhydrolase_5 PF12695.2 gi|529078908|ref|YP_008377911.1| - 0.056 13.1 0.7 0.55 9.9 0.0 2.6 1 1 1 2 2 2 0 Alpha/beta hydrolase family DegT_DnrJ_EryC1 PF01041.12 gi|529078908|ref|YP_008377911.1| - 0.066 12.2 0.6 0.11 11.5 0.4 1.3 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family SNARE_assoc PF09335.6 gi|529078909|ref|YP_008377912.1| - 3e-13 50.0 0.7 3e-13 50.0 0.5 2.2 1 1 1 2 2 2 1 SNARE associated Golgi protein NYN PF01936.13 gi|529078910|ref|YP_008377913.1| - 3.2e-19 69.6 0.0 3.6e-19 69.4 0.0 1.0 1 0 0 1 1 1 1 NYN domain AP_endonuc_2 PF01261.19 gi|529078910|ref|YP_008377913.1| - 0.002 17.4 0.5 0.0054 16.0 0.3 1.6 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel Peripla_BP_1 PF00532.16 gi|529078910|ref|YP_008377913.1| - 0.0047 16.1 0.0 0.0063 15.7 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family CoA_binding_2 PF13380.1 gi|529078910|ref|YP_008377913.1| - 0.058 13.5 0.0 0.13 12.4 0.0 1.5 1 1 0 1 1 1 0 CoA binding domain TatD_DNase PF01026.16 gi|529078911|ref|YP_008377914.1| - 1.2e-20 73.8 0.0 5.9e-19 68.2 0.0 2.0 1 1 0 1 1 1 1 TatD related DNase Lactamase_B_3 PF13483.1 gi|529078912|ref|YP_008377915.1| - 7.9e-23 80.9 0.3 1.1e-22 80.5 0.2 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|529078912|ref|YP_008377915.1| - 1e-15 57.8 0.9 1.2e-15 57.5 0.6 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|529078912|ref|YP_008377915.1| - 2.7e-10 40.2 5.4 3.7e-10 39.7 3.7 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Trypsin_2 PF13365.1 gi|529078913|ref|YP_008377916.1| - 3e-20 72.3 0.9 5.2e-20 71.6 0.6 1.4 1 0 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.21 gi|529078913|ref|YP_008377916.1| - 1.2e-11 44.6 0.3 5.3e-11 42.5 0.2 1.9 1 1 0 1 1 1 1 Trypsin PDZ_2 PF13180.1 gi|529078913|ref|YP_008377916.1| - 1.5e-09 37.5 0.1 3e-09 36.6 0.0 1.5 1 0 0 1 1 1 1 PDZ domain Peptidase_S46 PF10459.4 gi|529078913|ref|YP_008377916.1| - 0.29 9.5 0.8 0.49 8.7 0.6 1.3 1 0 0 1 1 1 0 Peptidase S46 TAT_signal PF10518.4 gi|529078913|ref|YP_008377916.1| - 0.9 9.7 8.2 0.086 12.8 2.0 2.2 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Metal_resist PF13801.1 gi|529078914|ref|YP_008377917.1| - 0.00077 19.4 4.7 0.00077 19.4 3.2 2.0 2 1 0 2 2 2 1 Heavy-metal resistance DUF3150 PF11348.3 gi|529078914|ref|YP_008377917.1| - 0.11 11.5 0.3 0.16 11.0 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3150) DNA_primase_S PF01896.14 gi|529078915|ref|YP_008377918.1| - 3.8e-24 85.1 0.0 5.8e-24 84.5 0.0 1.2 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit Acetyltransf_7 PF13508.1 gi|529078916|ref|YP_008377919.1| - 9.2e-13 48.1 0.3 1.4e-12 47.5 0.2 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|529078916|ref|YP_008377919.1| - 1.6e-11 44.0 0.2 2.6e-11 43.4 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|529078916|ref|YP_008377919.1| - 4.1e-08 33.3 0.2 5.3e-08 32.9 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|529078916|ref|YP_008377919.1| - 7.9e-07 28.7 0.0 1.4e-06 27.9 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|529078916|ref|YP_008377919.1| - 5.2e-05 23.2 0.1 8e-05 22.6 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|529078916|ref|YP_008377919.1| - 0.00024 21.0 0.2 0.00029 20.7 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|529078916|ref|YP_008377919.1| - 0.00024 20.9 0.2 0.00054 19.8 0.1 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF502 PF04367.8 gi|529078917|ref|YP_008377920.1| - 2.8e-24 84.9 0.0 2.8e-24 84.9 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF502) O-ag_pol_Wzy PF14296.1 gi|529078917|ref|YP_008377920.1| - 0.028 13.0 0.2 0.038 12.5 0.1 1.1 1 0 0 1 1 1 0 O-antigen polysaccharide polymerase Wzy EI24 PF07264.6 gi|529078917|ref|YP_008377920.1| - 0.27 10.6 4.9 0.41 10.0 3.4 1.2 1 0 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) Colicin_V PF02674.11 gi|529078917|ref|YP_008377920.1| - 0.38 10.6 6.6 0.71 9.7 4.6 1.4 1 1 0 1 1 1 0 Colicin V production protein SPC12 PF06645.8 gi|529078917|ref|YP_008377920.1| - 1 9.2 3.3 1.9 8.3 0.2 2.3 2 0 0 2 2 2 0 Microsomal signal peptidase 12 kDa subunit (SPC12) Archease PF01951.11 gi|529078918|ref|YP_008377921.1| - 3.7e-26 91.7 0.0 4.1e-26 91.5 0.0 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) peroxidase PF00141.18 gi|529078919|ref|YP_008377922.1| - 6.1e-91 303.9 0.0 2.2e-51 174.5 0.0 2.2 2 0 0 2 2 2 2 Peroxidase DUF4578 PF15147.1 gi|529078919|ref|YP_008377922.1| - 0.24 11.7 0.0 0.44 10.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4578) RtcB PF01139.12 gi|529078920|ref|YP_008377923.1| - 1e-149 499.0 0.0 1.2e-149 498.9 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB VESA1_N PF12785.2 gi|529078920|ref|YP_008377923.1| - 0.04 12.8 0.0 0.053 12.4 0.0 1.1 1 0 0 1 1 1 0 Variant erythrocyte surface antigen-1 DUF1628 PF07790.6 gi|529078921|ref|YP_008377924.1| - 7.3e-08 33.0 0.2 1.2e-07 32.3 0.2 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) DUF2723 PF11028.3 gi|529078922|ref|YP_008377925.1| - 0.16 11.4 2.0 0.34 10.3 0.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2723) UPF0236 PF06782.6 gi|529078923|ref|YP_008377926.1| - 4.1e-07 28.7 0.1 3.2e-05 22.5 0.0 2.2 2 0 0 2 2 2 2 Uncharacterised protein family (UPF0236) Transposase_mut PF00872.13 gi|529078923|ref|YP_008377926.1| - 9.9e-05 21.0 1.5 0.024 13.2 0.1 2.5 2 1 0 2 2 2 2 Transposase, Mutator family MS_channel PF00924.13 gi|529078924|ref|YP_008377927.1| - 2.7e-28 98.7 0.0 3.3e-28 98.4 0.0 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel Dodecin PF07311.7 gi|529078925|ref|YP_008377928.1| - 3.4e-22 78.2 0.1 3.7e-22 78.1 0.1 1.0 1 0 0 1 1 1 1 Dodecin DUF2150 PF09920.4 gi|529078926|ref|YP_008377929.1| - 1.3e-67 227.1 9.3 1.5e-67 226.9 6.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) HMA PF00403.21 gi|529078926|ref|YP_008377929.1| - 0.0089 16.1 0.2 0.016 15.3 0.1 1.5 1 0 0 1 1 1 1 Heavy-metal-associated domain Big_1 PF02369.11 gi|529078927|ref|YP_008377930.1| - 2.1e-06 27.5 17.1 0.00052 19.8 0.5 5.1 3 2 1 4 4 4 3 Bacterial Ig-like domain (group 1) Big_3_3 PF13750.1 gi|529078927|ref|YP_008377930.1| - 0.0027 17.1 2.0 0.0027 17.1 1.4 2.6 2 1 1 3 3 3 1 Bacterial Ig-like domain (group 3) DUF824 PF05688.6 gi|529078927|ref|YP_008377930.1| - 0.0079 15.8 4.0 0.47 10.1 0.0 3.4 3 0 0 3 3 3 2 Salmonella repeat of unknown function (DUF824) DUF1628 PF07790.6 gi|529078927|ref|YP_008377930.1| - 0.064 14.0 3.9 0.23 12.2 0.1 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF1628) GPI-anchored PF10342.4 gi|529078927|ref|YP_008377930.1| - 0.65 10.5 14.9 1.5 9.3 0.1 5.4 3 1 2 5 5 5 0 Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family PKD PF00801.15 gi|529078928|ref|YP_008377931.1| - 3.7e-40 135.5 61.7 1.7e-13 50.1 4.6 7.2 7 2 0 7 7 7 4 PKD domain Big_3_4 PF13754.1 gi|529078928|ref|YP_008377931.1| - 3.2e-12 46.5 97.7 2.7e-06 27.5 8.7 8.6 7 1 1 8 8 8 5 Bacterial Ig-like domain (group 3) DUF1628 PF07790.6 gi|529078928|ref|YP_008377931.1| - 1.5e-09 38.4 3.4 1.5e-09 38.4 2.4 4.3 4 1 2 6 6 6 1 Protein of unknown function (DUF1628) BiPBP_C PF06832.7 gi|529078928|ref|YP_008377931.1| - 9.1e-05 22.3 0.7 1.8 8.5 0.1 5.0 4 1 1 5 5 5 1 Penicillin-Binding Protein C-terminus Family DUF4625 PF15418.1 gi|529078928|ref|YP_008377931.1| - 0.003 17.7 7.8 20 5.3 0.0 6.0 5 2 1 6 6 6 0 Domain of unknown function (DUF4625) SWM_repeat PF13753.1 gi|529078928|ref|YP_008377931.1| - 0.0035 16.4 38.0 0.0035 16.4 26.3 4.4 1 1 3 4 4 4 2 Putative flagellar system-associated repeat Y_Y_Y PF07495.8 gi|529078928|ref|YP_008377931.1| - 0.077 12.7 0.2 0.077 12.7 0.2 3.8 3 1 1 4 4 4 0 Y_Y_Y domain SoxZ PF08770.6 gi|529078928|ref|YP_008377931.1| - 0.26 10.7 5.6 15 5.0 0.0 4.8 6 0 0 6 6 6 0 Sulphur oxidation protein SoxZ DUF4440 PF14534.1 gi|529078928|ref|YP_008377931.1| - 0.79 9.9 7.8 0.8 9.9 0.1 4.1 4 1 0 4 4 4 0 Domain of unknown function (DUF4440) Imm10 PF15562.1 gi|529078928|ref|YP_008377931.1| - 1.7 8.4 3.3 18 5.1 0.0 3.8 4 0 0 4 4 4 0 Immunity protein 10 HMG_CoA_synt_N PF01154.12 gi|529078929|ref|YP_008377932.1| - 8.7e-27 93.7 0.0 1.2e-26 93.2 0.0 1.2 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal HMG_CoA_synt_C PF08540.5 gi|529078929|ref|YP_008377932.1| - 1.3e-18 67.5 0.0 2.4e-18 66.6 0.0 1.4 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal HTH_3 PF01381.17 gi|529078930|ref|YP_008377933.1| - 5.4e-08 32.5 0.0 1.4e-07 31.2 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|529078930|ref|YP_008377933.1| - 1.7e-07 31.1 0.0 3.4e-07 30.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|529078930|ref|YP_008377933.1| - 1.8e-07 31.2 1.9 4.2e-07 30.0 0.0 2.3 2 1 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|529078930|ref|YP_008377933.1| - 0.0021 17.6 0.3 0.024 14.3 0.0 2.5 3 0 0 3 3 3 1 MarR family HTH_37 PF13744.1 gi|529078930|ref|YP_008377933.1| - 0.037 13.8 0.1 0.15 11.8 0.0 2.1 2 1 0 2 2 2 0 Helix-turn-helix domain DUF457 PF04307.9 gi|529078931|ref|YP_008377934.1| - 7.1e-10 38.4 7.1 8.9e-10 38.1 4.9 1.3 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) ABC2_membrane_3 PF12698.2 gi|529078932|ref|YP_008377935.1| - 5.9e-38 130.7 0.0 6.8e-38 130.5 0.0 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|529078932|ref|YP_008377935.1| - 7.9e-26 90.5 12.2 2.1e-24 85.9 5.6 2.2 2 0 0 2 2 2 2 ABC-2 type transporter ABC2_membrane_2 PF12679.2 gi|529078932|ref|YP_008377935.1| - 2.1e-13 49.7 2.1 8.5e-13 47.7 1.5 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|529078933|ref|YP_008377936.1| - 5.6e-30 104.4 0.0 9.5e-30 103.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|529078933|ref|YP_008377936.1| - 6.6e-16 59.1 0.0 4.3e-10 40.0 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|529078933|ref|YP_008377936.1| - 0.00044 19.7 0.0 0.0009 18.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|529078933|ref|YP_008377936.1| - 0.00091 19.5 0.0 0.0013 19.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|529078933|ref|YP_008377936.1| - 0.0014 18.6 0.0 0.011 15.7 0.0 2.0 1 1 1 2 2 2 1 AAA ATPase domain AAA_15 PF13175.1 gi|529078933|ref|YP_008377936.1| - 0.0015 17.6 0.0 0.056 12.4 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_33 PF13671.1 gi|529078933|ref|YP_008377936.1| - 0.01 15.7 0.4 0.027 14.3 0.3 1.9 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|529078933|ref|YP_008377936.1| - 0.014 14.6 0.0 0.32 10.1 0.0 2.1 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain HTH_7 PF02796.10 gi|529078933|ref|YP_008377936.1| - 0.014 15.2 0.0 0.069 13.0 0.0 2.2 2 1 0 2 2 2 0 Helix-turn-helix domain of resolvase SRP54 PF00448.17 gi|529078933|ref|YP_008377936.1| - 0.02 14.3 0.1 0.031 13.7 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_28 PF13521.1 gi|529078933|ref|YP_008377936.1| - 0.043 13.7 0.8 0.12 12.3 0.0 2.1 3 0 0 3 3 3 0 AAA domain AAA_22 PF13401.1 gi|529078933|ref|YP_008377936.1| - 0.048 13.7 0.1 0.19 11.8 0.0 2.2 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|529078933|ref|YP_008377936.1| - 0.074 13.2 0.2 2.5 8.3 0.1 2.6 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) KdpD PF02702.12 gi|529078933|ref|YP_008377936.1| - 0.075 12.1 0.0 0.15 11.1 0.0 1.4 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain Zeta_toxin PF06414.7 gi|529078933|ref|YP_008377936.1| - 0.1 11.6 0.0 0.29 10.2 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin AAA_10 PF12846.2 gi|529078933|ref|YP_008377936.1| - 0.13 11.6 0.1 2.4 7.5 0.0 2.5 2 1 1 3 3 3 0 AAA-like domain AAA_13 PF13166.1 gi|529078933|ref|YP_008377936.1| - 0.23 9.8 0.0 0.31 9.4 0.0 1.1 1 0 0 1 1 1 0 AAA domain Pyr_redox_2 PF07992.9 gi|529078934|ref|YP_008377937.1| - 4.4e-17 62.6 0.3 7.2e-17 61.9 0.1 1.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|529078934|ref|YP_008377937.1| - 2.4e-09 37.4 0.4 4.8e-07 30.0 0.1 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|529078934|ref|YP_008377937.1| - 3.5e-06 27.2 1.2 0.19 11.7 0.0 3.4 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.16 gi|529078934|ref|YP_008377937.1| - 0.0079 15.7 1.6 1.9 8.0 0.1 2.5 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_9 PF13454.1 gi|529078934|ref|YP_008377937.1| - 0.056 13.2 0.5 26 4.5 0.0 3.4 3 1 1 4 4 4 0 FAD-NAD(P)-binding K_oxygenase PF13434.1 gi|529078934|ref|YP_008377937.1| - 0.092 11.6 0.2 7 5.4 0.0 2.3 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) DUF555 PF04475.7 gi|529078936|ref|YP_008377939.1| - 6.5e-50 167.3 0.3 7.6e-50 167.1 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF555) zinc_ribbon_2 PF13240.1 gi|529078936|ref|YP_008377939.1| - 0.0041 16.5 0.1 0.0065 15.9 0.1 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|529078936|ref|YP_008377939.1| - 0.016 14.3 0.2 0.029 13.6 0.2 1.3 1 0 0 1 1 1 0 zinc-ribbon domain Dodecin PF07311.7 gi|529078936|ref|YP_008377939.1| - 0.076 13.0 0.3 0.19 11.7 0.1 1.7 2 0 0 2 2 2 0 Dodecin CBS PF00571.23 gi|529078937|ref|YP_008377940.1| - 1.2e-21 76.1 1.7 8.9e-12 44.6 0.0 2.8 2 1 0 2 2 2 2 CBS domain HTH_31 PF13560.1 gi|529078937|ref|YP_008377940.1| - 8.4e-13 48.3 2.3 2.4e-12 46.8 1.6 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|529078937|ref|YP_008377940.1| - 5.7e-11 42.0 0.3 1.2e-10 41.0 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.2 gi|529078937|ref|YP_008377940.1| - 2.9e-09 36.8 0.0 5.5e-09 35.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|529078937|ref|YP_008377940.1| - 0.00015 21.3 0.1 0.00028 20.4 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|529078937|ref|YP_008377940.1| - 0.0011 18.7 0.0 0.0025 17.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|529078937|ref|YP_008377940.1| - 0.011 15.1 0.1 0.48 9.8 0.0 2.5 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_26 PF13443.1 gi|529078937|ref|YP_008377940.1| - 0.013 15.7 0.0 0.026 14.7 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain MarR_2 PF12802.2 gi|529078937|ref|YP_008377940.1| - 0.083 12.5 0.4 0.9 9.2 0.1 2.5 2 0 0 2 2 2 0 MarR family IMS PF00817.15 gi|529078938|ref|YP_008377941.1| - 2.7e-40 137.5 0.3 4.3e-40 136.9 0.2 1.3 1 0 0 1 1 1 1 impB/mucB/samB family IMS_C PF11799.3 gi|529078938|ref|YP_008377941.1| - 2.5e-15 56.5 0.0 4.8e-15 55.6 0.0 1.5 1 0 0 1 1 1 1 impB/mucB/samB family C-terminal domain HHH_5 PF14520.1 gi|529078938|ref|YP_008377941.1| - 1.5e-06 28.2 0.3 4.6e-06 26.7 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix domain IMS_HHH PF11798.3 gi|529078938|ref|YP_008377941.1| - 2.9e-06 27.0 0.0 5.5e-06 26.1 0.0 1.5 1 0 0 1 1 1 1 IMS family HHH motif DNA_pol_lambd_f PF10391.4 gi|529078938|ref|YP_008377941.1| - 2.7e-05 23.6 0.1 0.0001 21.7 0.0 1.9 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda Cdd1 PF11731.3 gi|529078938|ref|YP_008377941.1| - 0.00013 21.8 0.0 0.00026 20.8 0.0 1.4 1 0 0 1 1 1 1 Pathogenicity locus DUF4332 PF14229.1 gi|529078938|ref|YP_008377941.1| - 0.0048 16.8 0.0 0.036 14.0 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4332) ADH_zinc_N_2 PF13602.1 gi|529078939|ref|YP_008377942.1| - 0.083 13.7 0.8 0.51 11.2 0.6 1.9 1 1 0 1 1 1 0 Zinc-binding dehydrogenase AAA_10 PF12846.2 gi|529078940|ref|YP_008377943.1| - 8.9e-16 58.1 9.7 6.4e-10 38.9 0.0 3.2 2 2 0 3 3 2 2 AAA-like domain DUF87 PF01935.12 gi|529078940|ref|YP_008377943.1| - 9.5e-12 45.2 0.4 4.3e-11 43.0 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function DUF87 DUF853 PF05872.7 gi|529078940|ref|YP_008377943.1| - 1.7e-05 23.3 0.2 0.0038 15.6 0.0 3.0 2 1 1 3 3 3 1 Bacterial protein of unknown function (DUF853) AAA_17 PF13207.1 gi|529078940|ref|YP_008377943.1| - 7.5e-05 23.5 1.5 0.0019 18.9 0.0 2.6 2 0 0 2 2 2 1 AAA domain APS_kinase PF01583.15 gi|529078940|ref|YP_008377943.1| - 0.00019 21.1 0.8 0.013 15.1 0.0 2.7 3 0 0 3 3 2 1 Adenylylsulphate kinase IncA PF04156.9 gi|529078940|ref|YP_008377943.1| - 0.0015 18.1 5.5 0.0031 17.1 3.8 1.5 1 0 0 1 1 1 1 IncA protein NTR2 PF15458.1 gi|529078940|ref|YP_008377943.1| - 0.0015 17.8 0.3 0.0015 17.8 0.2 1.7 2 0 0 2 2 1 1 Nineteen complex-related protein 2 DUF4515 PF14988.1 gi|529078940|ref|YP_008377943.1| - 0.0021 17.7 2.0 0.0041 16.8 1.4 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4515) AAA PF00004.24 gi|529078940|ref|YP_008377943.1| - 0.0026 17.9 0.5 0.06 13.5 0.0 2.9 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Atg14 PF10186.4 gi|529078940|ref|YP_008377943.1| - 0.0027 16.7 0.5 0.004 16.1 0.3 1.2 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 AAA_22 PF13401.1 gi|529078940|ref|YP_008377943.1| - 0.0037 17.4 0.3 0.029 14.4 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|529078940|ref|YP_008377943.1| - 0.0094 16.2 1.1 0.046 14.0 0.0 2.5 2 1 0 2 2 2 1 AAA domain Med4 PF10018.4 gi|529078940|ref|YP_008377943.1| - 0.015 14.7 1.1 0.13 11.7 1.2 2.1 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 AAA_13 PF13166.1 gi|529078940|ref|YP_008377943.1| - 0.029 12.8 0.2 0.045 12.2 0.2 1.2 1 0 0 1 1 1 0 AAA domain TPR_MLP1_2 PF07926.7 gi|529078940|ref|YP_008377943.1| - 0.031 14.0 0.8 0.078 12.7 0.6 1.6 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein Spc7 PF08317.6 gi|529078940|ref|YP_008377943.1| - 0.031 12.9 0.5 0.052 12.1 0.4 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein GAS PF13851.1 gi|529078940|ref|YP_008377943.1| - 0.038 13.1 1.5 0.076 12.1 1.0 1.4 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Zot PF05707.7 gi|529078940|ref|YP_008377943.1| - 0.04 13.3 0.0 0.8 9.1 0.0 2.2 1 1 0 1 1 1 0 Zonular occludens toxin (Zot) CbiA PF01656.18 gi|529078940|ref|YP_008377943.1| - 0.049 13.0 0.0 0.1 12.0 0.0 1.6 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain NPV_P10 PF05531.7 gi|529078940|ref|YP_008377943.1| - 0.052 13.8 0.6 0.21 11.8 0.4 2.1 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein TMF_TATA_bd PF12325.3 gi|529078940|ref|YP_008377943.1| - 0.069 12.8 4.5 0.74 9.5 2.7 2.4 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding Pox_A_type_inc PF04508.7 gi|529078940|ref|YP_008377943.1| - 0.079 12.7 6.3 0.48 10.3 3.4 2.8 2 0 0 2 2 2 0 Viral A-type inclusion protein repeat Med9 PF07544.8 gi|529078940|ref|YP_008377943.1| - 0.096 12.4 3.9 0.2 11.3 2.7 1.5 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 APG6 PF04111.7 gi|529078940|ref|YP_008377943.1| - 0.21 10.5 1.2 0.32 9.9 0.8 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 Mnd1 PF03962.10 gi|529078940|ref|YP_008377943.1| - 0.4 10.3 3.4 0.78 9.3 2.3 1.4 1 0 0 1 1 1 0 Mnd1 family AAA_16 PF13191.1 gi|529078940|ref|YP_008377943.1| - 0.47 10.4 4.9 0.26 11.2 0.3 2.5 2 1 0 2 2 2 0 AAA ATPase domain DivIC PF04977.10 gi|529078940|ref|YP_008377943.1| - 0.53 9.8 2.7 1.5 8.3 1.8 1.8 1 0 0 1 1 1 0 Septum formation initiator CorA PF01544.13 gi|529078940|ref|YP_008377943.1| - 0.75 8.7 3.5 1.4 7.8 2.4 1.3 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF3552 PF12072.3 gi|529078940|ref|YP_008377943.1| - 1.9 7.6 9.3 0.39 9.8 4.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF3552) Spc24 PF08286.6 gi|529078940|ref|YP_008377943.1| - 4.1 7.1 7.7 19 5.0 5.3 2.1 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 BMF PF15185.1 gi|529078940|ref|YP_008377943.1| - 8.8 5.5 8.9 3.3 6.9 3.2 2.3 2 1 0 2 2 2 0 Bcl-2-modifying factor, apoptosis DUF1628 PF07790.6 gi|529078941|ref|YP_008377944.1| - 3.6e-16 59.6 2.2 1e-15 58.2 0.6 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF1628) Rhodanese PF00581.15 gi|529078942|ref|YP_008377945.1| - 3.8e-31 107.7 0.0 6.2e-17 61.9 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain Lipase_GDSL_3 PF14606.1 gi|529078943|ref|YP_008377946.1| - 6e-28 97.7 0.0 8.5e-28 97.2 0.0 1.2 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL_2 PF13472.1 gi|529078943|ref|YP_008377946.1| - 2.5e-12 47.2 0.6 3.9e-12 46.6 0.4 1.3 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family DUF318 PF03773.8 gi|529078944|ref|YP_008377947.1| - 1.2e-10 40.8 7.8 1.6e-10 40.4 5.4 1.1 1 0 0 1 1 1 1 Predicted permease DUF318 PF03773.8 gi|529078945|ref|YP_008377948.1| - 2e-07 30.2 12.2 2.7e-07 29.9 8.5 1.2 1 0 0 1 1 1 1 Predicted permease Chlorosome_CsmC PF11098.3 gi|529078945|ref|YP_008377948.1| - 0.028 14.1 0.4 0.05 13.3 0.3 1.5 1 0 0 1 1 1 0 Chlorosome envelope protein C CMD PF02627.15 gi|529078946|ref|YP_008377949.1| - 8.9e-09 35.0 0.1 1e-08 34.8 0.0 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Zn-ribbon_8 PF09723.5 gi|529078947|ref|YP_008377950.1| - 0.034 14.0 0.4 0.43 10.5 0.0 2.1 2 0 0 2 2 2 0 Zinc ribbon domain DiS_P_DiS PF06750.8 gi|529078947|ref|YP_008377950.1| - 0.073 12.8 0.0 0.076 12.8 0.0 1.1 1 0 0 1 1 1 0 Bacterial Peptidase A24 N-terminal domain zf-C4_Topoisom PF01396.14 gi|529078947|ref|YP_008377950.1| - 0.19 11.2 0.2 0.19 11.2 0.2 1.7 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-IS66 PF13005.2 gi|529078947|ref|YP_008377950.1| - 0.33 10.9 0.2 0.33 10.9 0.1 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 ABC_tran PF00005.22 gi|529078949|ref|YP_008377952.1| - 4.8e-31 107.8 0.0 8.9e-31 107.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|529078949|ref|YP_008377952.1| - 4.4e-16 59.6 0.0 1.6e-10 41.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|529078949|ref|YP_008377952.1| - 6.7e-05 23.3 0.0 0.00014 22.2 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_16 PF13191.1 gi|529078949|ref|YP_008377952.1| - 7.6e-05 22.7 0.0 0.00015 21.8 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|529078949|ref|YP_008377952.1| - 0.00089 18.7 0.2 0.0019 17.7 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|529078949|ref|YP_008377952.1| - 0.0057 15.9 0.0 0.61 9.2 0.0 2.2 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|529078949|ref|YP_008377952.1| - 0.006 17.3 0.7 0.12 13.2 0.0 2.3 1 1 0 2 2 2 1 AAA domain AAA PF00004.24 gi|529078949|ref|YP_008377952.1| - 0.0062 16.7 0.1 0.015 15.4 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.17 gi|529078949|ref|YP_008377952.1| - 0.0074 15.7 0.1 0.012 15.1 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_30 PF13604.1 gi|529078949|ref|YP_008377952.1| - 0.012 15.1 0.0 0.02 14.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|529078949|ref|YP_008377952.1| - 0.02 14.8 0.0 0.063 13.2 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.1 gi|529078949|ref|YP_008377952.1| - 0.02 13.9 0.0 0.56 9.1 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_23 PF13476.1 gi|529078949|ref|YP_008377952.1| - 0.02 15.2 0.0 0.034 14.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|529078949|ref|YP_008377952.1| - 0.022 13.4 0.0 0.029 13.0 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein Zeta_toxin PF06414.7 gi|529078949|ref|YP_008377952.1| - 0.025 13.6 0.0 0.043 12.9 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin AAA_33 PF13671.1 gi|529078949|ref|YP_008377952.1| - 0.028 14.2 0.1 0.11 12.4 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|529078949|ref|YP_008377952.1| - 0.04 14.0 0.1 0.13 12.3 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|529078949|ref|YP_008377952.1| - 0.051 13.0 0.1 0.081 12.3 0.0 1.3 1 1 0 1 1 1 0 AAA-like domain cobW PF02492.14 gi|529078949|ref|YP_008377952.1| - 0.062 12.7 0.1 0.11 11.8 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.1 gi|529078949|ref|YP_008377952.1| - 0.063 13.2 0.1 0.26 11.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|529078949|ref|YP_008377952.1| - 0.076 12.4 0.2 0.22 10.8 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|529078949|ref|YP_008377952.1| - 0.16 11.7 1.1 0.25 11.1 0.1 1.9 2 1 0 2 2 1 0 Part of AAA domain ABC2_membrane PF01061.19 gi|529078950|ref|YP_008377953.1| - 2.5e-33 115.0 18.0 2.5e-33 115.0 12.5 1.4 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|529078950|ref|YP_008377953.1| - 4.4e-18 65.4 17.1 4.4e-18 65.4 11.9 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|529078950|ref|YP_008377953.1| - 1.7e-05 24.1 22.0 2.4e-05 23.6 15.3 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein Cm_res_leader PF08077.6 gi|529078950|ref|YP_008377953.1| - 0.081 12.6 0.6 0.35 10.6 0.4 2.1 1 0 0 1 1 1 0 Chloramphenicol resistance gene leader peptide PAS_4 PF08448.5 gi|529078951|ref|YP_008377954.1| - 1.2e-22 80.0 5.1 5e-08 32.9 0.0 4.1 3 0 0 3 3 3 3 PAS fold HATPase_c PF02518.21 gi|529078951|ref|YP_008377954.1| - 1.4e-21 76.3 0.0 3.3e-21 75.0 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.19 gi|529078951|ref|YP_008377954.1| - 2.3e-19 69.4 0.0 8.2e-19 67.6 0.0 2.0 1 0 0 1 1 1 1 Response regulator receiver domain GAF_2 PF13185.1 gi|529078951|ref|YP_008377954.1| - 2.8e-17 63.5 3.7 5.8e-17 62.5 0.3 3.1 3 0 0 3 3 3 1 GAF domain PAS_9 PF13426.1 gi|529078951|ref|YP_008377954.1| - 3.1e-14 53.2 0.9 0.00043 20.6 0.0 4.4 4 0 0 4 4 4 3 PAS domain PAS_8 PF13188.1 gi|529078951|ref|YP_008377954.1| - 5.6e-13 48.2 0.1 9.6e-06 25.2 0.0 3.2 2 0 0 2 2 2 2 PAS domain PAS_7 PF12860.2 gi|529078951|ref|YP_008377954.1| - 3.3e-10 39.9 0.2 0.0021 18.0 0.0 3.4 3 0 0 3 3 3 2 PAS fold HisKA PF00512.20 gi|529078951|ref|YP_008377954.1| - 2.9e-08 33.5 0.1 2.9e-08 33.5 0.1 4.1 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain GAF_3 PF13492.1 gi|529078951|ref|YP_008377954.1| - 2.5e-06 27.6 0.0 1.6e-05 25.0 0.0 2.5 1 0 0 1 1 1 1 GAF domain PAS PF00989.19 gi|529078951|ref|YP_008377954.1| - 3.6e-06 26.7 0.1 0.11 12.2 0.0 4.0 4 0 0 4 4 4 2 PAS fold HATPase_c_2 PF13581.1 gi|529078951|ref|YP_008377954.1| - 7.2e-06 25.7 0.2 3.4e-05 23.6 0.1 2.3 2 0 0 2 2 1 1 Histidine kinase-like ATPase domain OKR_DC_1_N PF03709.10 gi|529078951|ref|YP_008377954.1| - 9.9e-06 25.5 1.4 4.3e-05 23.5 0.0 2.8 4 0 0 4 4 4 1 Orn/Lys/Arg decarboxylase, N-terminal domain HATPase_c_3 PF13589.1 gi|529078951|ref|YP_008377954.1| - 0.00011 21.8 0.0 0.00036 20.1 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|529078951|ref|YP_008377954.1| - 0.019 14.6 0.0 2.9 7.6 0.0 2.6 2 1 0 2 2 2 0 GHKL domain EPSP_synthase PF00275.15 gi|529078952|ref|YP_008377955.1| - 2e-102 342.7 0.2 2.4e-102 342.5 0.1 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Cu_amine_oxidN1 PF07833.6 gi|529078952|ref|YP_008377955.1| - 0.059 13.7 0.0 0.17 12.1 0.0 1.9 1 1 0 1 1 1 0 Copper amine oxidase N-terminal domain DUF2391 PF09622.5 gi|529078953|ref|YP_008377956.1| - 0.0027 16.9 3.4 0.0035 16.5 2.3 1.2 1 0 0 1 1 1 1 Putative integral membrane protein (DUF2391) MDMPI_C PF07398.6 gi|529078953|ref|YP_008377956.1| - 0.3 11.6 1.9 0.32 11.6 0.4 1.8 2 1 0 2 2 2 0 MDMPI C-terminal domain MutS_V PF00488.16 gi|529078954|ref|YP_008377957.1| - 8.6e-95 316.6 0.0 1.3e-94 315.9 0.0 1.3 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.13 gi|529078954|ref|YP_008377957.1| - 3.5e-42 144.5 3.4 4.7e-42 144.1 1.8 1.6 2 0 0 2 2 2 1 MutS domain III MutS_I PF01624.15 gi|529078954|ref|YP_008377957.1| - 2.8e-26 91.7 0.0 6.6e-26 90.5 0.0 1.7 1 0 0 1 1 1 1 MutS domain I MutS_II PF05188.12 gi|529078954|ref|YP_008377957.1| - 2.7e-24 85.7 0.0 7.6e-24 84.3 0.0 1.8 1 0 0 1 1 1 1 MutS domain II MutS_IV PF05190.13 gi|529078954|ref|YP_008377957.1| - 7.7e-23 80.4 0.5 1.7e-22 79.3 0.4 1.6 1 0 0 1 1 1 1 MutS family domain IV AAA_29 PF13555.1 gi|529078954|ref|YP_008377957.1| - 0.015 14.8 0.0 0.03 13.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain TelA PF05816.6 gi|529078954|ref|YP_008377957.1| - 0.026 13.2 0.1 4.5 5.8 0.0 2.3 2 0 0 2 2 2 0 Toxic anion resistance protein (TelA) AAA_14 PF13173.1 gi|529078954|ref|YP_008377957.1| - 0.096 12.5 0.0 0.47 10.3 0.0 2.1 1 1 0 1 1 1 0 AAA domain CARDB PF07705.6 gi|529078955|ref|YP_008377958.1| - 8e-19 67.5 15.9 2.6e-05 24.2 0.0 5.4 6 0 0 6 6 6 4 CARDB Peptidase_MA_2 PF13485.1 gi|529078955|ref|YP_008377958.1| - 0.0024 17.9 0.8 0.0053 16.7 0.6 1.5 1 0 0 1 1 1 1 Peptidase MA superfamily Cohesin PF00963.13 gi|529078955|ref|YP_008377958.1| - 0.95 9.3 14.7 1.8 8.4 1.1 4.4 4 2 2 6 6 6 0 Cohesin domain Cupin_2 PF07883.6 gi|529078957|ref|YP_008377960.1| - 3.9e-10 39.0 0.8 5.2e-10 38.6 0.5 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.7 gi|529078957|ref|YP_008377960.1| - 2.2e-05 23.7 0.1 3.5e-05 23.0 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) AraC_binding_2 PF14525.1 gi|529078957|ref|YP_008377960.1| - 0.0016 18.0 0.0 0.0018 17.9 0.0 1.1 1 0 0 1 1 1 1 AraC-binding-like domain EutQ PF06249.7 gi|529078957|ref|YP_008377960.1| - 0.016 14.7 0.0 0.028 13.9 0.0 1.5 2 0 0 2 2 2 0 Ethanolamine utilisation protein EutQ DUF1498 PF07385.7 gi|529078957|ref|YP_008377960.1| - 0.024 13.7 0.0 0.025 13.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1498) KduI PF04962.7 gi|529078957|ref|YP_008377960.1| - 0.059 12.4 0.2 0.075 12.0 0.2 1.3 1 1 0 1 1 1 0 KduI/IolB family MannoseP_isomer PF01050.13 gi|529078957|ref|YP_008377960.1| - 0.1 12.1 0.0 0.12 11.9 0.0 1.1 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase AIRS_C PF02769.17 gi|529078958|ref|YP_008377961.1| - 2.7e-24 85.9 0.1 3.8e-24 85.4 0.1 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|529078958|ref|YP_008377961.1| - 3.4e-06 27.1 0.1 9.1e-06 25.8 0.1 1.7 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain Radical_SAM PF04055.16 gi|529078959|ref|YP_008377962.1| - 4.1e-16 59.5 0.0 4.2e-15 56.3 0.0 2.2 2 0 0 2 2 2 1 Radical SAM superfamily zinc_ribbon_5 PF13719.1 gi|529078959|ref|YP_008377962.1| - 0.0045 16.5 1.0 2.4 7.8 0.1 2.6 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|529078959|ref|YP_008377962.1| - 0.0058 16.3 1.1 3.4 7.4 0.1 2.6 2 0 0 2 2 2 2 zinc-ribbon domain Fer4_12 PF13353.1 gi|529078959|ref|YP_008377962.1| - 0.018 15.1 0.0 0.037 14.1 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|529078959|ref|YP_008377962.1| - 0.067 13.2 0.9 0.28 11.2 0.0 2.1 2 0 0 2 2 2 0 4Fe-4S single cluster domain DUF3280 PF11684.3 gi|529078959|ref|YP_008377962.1| - 0.073 13.2 0.0 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2380) DUF21 PF01595.15 gi|529078960|ref|YP_008377963.1| - 1.9e-48 164.2 2.6 2.6e-48 163.7 1.8 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF21 CorC_HlyC PF03471.12 gi|529078960|ref|YP_008377963.1| - 1.3e-17 63.3 1.1 3.2e-17 62.0 0.8 1.8 1 0 0 1 1 1 1 Transporter associated domain CBS PF00571.23 gi|529078960|ref|YP_008377963.1| - 1.2e-15 57.0 7.0 1.2e-08 34.5 0.4 2.7 2 0 0 2 2 2 2 CBS domain Ldh_1_N PF00056.18 gi|529078961|ref|YP_008377964.1| - 5.6e-45 152.6 0.1 8.2e-45 152.0 0.1 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.13 gi|529078961|ref|YP_008377964.1| - 9.5e-41 139.4 0.0 1.4e-40 138.8 0.0 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain F420_oxidored PF03807.12 gi|529078961|ref|YP_008377964.1| - 1.5e-05 25.3 0.3 3.5e-05 24.1 0.2 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.15 gi|529078961|ref|YP_008377964.1| - 2.5e-05 24.4 0.1 5.1e-05 23.3 0.1 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|529078961|ref|YP_008377964.1| - 6.5e-05 22.3 0.3 0.00091 18.6 0.2 2.2 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ThiF PF00899.16 gi|529078961|ref|YP_008377964.1| - 0.00029 20.6 0.3 0.00074 19.3 0.2 1.6 1 0 0 1 1 1 1 ThiF family OCD_Mu_crystall PF02423.10 gi|529078961|ref|YP_008377964.1| - 0.00093 18.0 0.2 0.0016 17.3 0.1 1.3 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Semialdhyde_dh PF01118.19 gi|529078961|ref|YP_008377964.1| - 0.0011 19.2 0.1 0.0084 16.3 0.1 2.1 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|529078961|ref|YP_008377964.1| - 0.0012 18.8 0.3 0.003 17.5 0.2 1.7 1 0 0 1 1 1 1 TrkA-N domain Saccharop_dh PF03435.13 gi|529078961|ref|YP_008377964.1| - 0.0027 16.7 0.1 0.0042 16.1 0.1 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase 3HCDH_N PF02737.13 gi|529078961|ref|YP_008377964.1| - 0.0084 15.7 1.3 0.019 14.6 0.9 1.6 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|529078961|ref|YP_008377964.1| - 0.01 16.0 0.5 0.035 14.3 0.1 1.9 2 0 0 2 2 2 0 Putative NAD(P)-binding DAO PF01266.19 gi|529078961|ref|YP_008377964.1| - 0.013 14.3 2.8 0.014 14.3 0.8 1.7 1 1 1 2 2 2 0 FAD dependent oxidoreductase GFO_IDH_MocA PF01408.17 gi|529078961|ref|YP_008377964.1| - 0.016 15.6 0.1 0.029 14.8 0.1 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold ApbA PF02558.11 gi|529078961|ref|YP_008377964.1| - 0.046 13.1 0.1 0.13 11.6 0.0 1.8 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Pyr_redox_2 PF07992.9 gi|529078961|ref|YP_008377964.1| - 0.053 13.3 0.0 7.1 6.4 0.0 2.4 1 1 1 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Ecl1 PF12855.2 gi|529078961|ref|YP_008377964.1| - 0.07 12.4 0.6 0.13 11.5 0.4 1.4 1 0 0 1 1 1 0 Life-span regulatory factor PcrB PF01884.12 gi|529078963|ref|YP_008377966.1| - 5.3e-25 88.0 0.0 2.5e-24 85.8 0.0 1.8 1 1 0 1 1 1 1 PcrB family His_biosynth PF00977.16 gi|529078963|ref|YP_008377966.1| - 2.9e-05 23.4 0.1 9.7e-05 21.7 0.0 1.7 1 1 1 2 2 2 1 Histidine biosynthesis protein PDDEXK_1 PF12705.2 gi|529078963|ref|YP_008377966.1| - 0.006 15.9 0.1 0.011 15.1 0.0 1.3 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily NMO PF03060.10 gi|529078963|ref|YP_008377966.1| - 0.079 12.0 0.0 0.12 11.5 0.0 1.3 1 0 0 1 1 1 0 Nitronate monooxygenase DUF485 PF04341.7 gi|529078965|ref|YP_008377968.1| - 0.12 12.1 0.2 0.12 12.1 0.1 2.1 2 1 0 2 2 2 0 Protein of unknown function, DUF485 DUF3040 PF11239.3 gi|529078965|ref|YP_008377968.1| - 3.9 7.5 8.8 3.4 7.7 1.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) polyprenyl_synt PF00348.12 gi|529078967|ref|YP_008377970.1| - 1.1e-42 145.7 0.2 5e-42 143.5 0.1 1.9 1 1 0 1 1 1 1 Polyprenyl synthetase Herpes_UL14 PF03580.9 gi|529078968|ref|YP_008377971.1| - 0.043 13.6 0.0 0.097 12.4 0.0 1.5 1 0 0 1 1 1 0 Herpesvirus UL14-like protein Trp_halogenase PF04820.9 gi|529078969|ref|YP_008377972.1| - 2e-14 53.1 1.5 1.5e-09 36.9 0.0 2.4 1 1 0 2 2 2 2 Tryptophan halogenase DAO PF01266.19 gi|529078969|ref|YP_008377972.1| - 4.4e-14 52.1 3.7 2.1e-06 26.9 0.1 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|529078969|ref|YP_008377972.1| - 4.7e-12 45.7 7.0 2.4e-11 43.3 4.8 2.0 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|529078969|ref|YP_008377972.1| - 3.4e-10 39.3 5.3 2.8e-05 23.1 1.6 2.3 2 0 0 2 2 2 2 FAD binding domain FAD_binding_3 PF01494.14 gi|529078969|ref|YP_008377972.1| - 2.9e-09 36.4 1.5 4.1e-08 32.6 1.1 2.2 1 1 0 1 1 1 1 FAD binding domain HI0933_like PF03486.9 gi|529078969|ref|YP_008377972.1| - 3.1e-08 32.5 0.4 8.5e-06 24.4 0.1 2.3 2 0 0 2 2 2 2 HI0933-like protein GIDA PF01134.17 gi|529078969|ref|YP_008377972.1| - 4.2e-08 32.4 0.7 7.5e-08 31.6 0.5 1.3 1 1 0 1 1 1 1 Glucose inhibited division protein A Lycopene_cycl PF05834.7 gi|529078969|ref|YP_008377972.1| - 1.7e-06 27.2 0.8 6.5e-06 25.3 0.6 1.9 1 1 0 1 1 1 1 Lycopene cyclase protein Pyr_redox_2 PF07992.9 gi|529078969|ref|YP_008377972.1| - 2.7e-06 27.4 1.7 1.1e-05 25.3 1.3 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|529078969|ref|YP_008377972.1| - 6.6e-05 22.8 0.1 0.00025 20.9 0.1 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GMC_oxred_N PF00732.14 gi|529078969|ref|YP_008377972.1| - 0.00027 20.2 0.2 0.83 8.7 0.0 3.0 3 0 0 3 3 3 2 GMC oxidoreductase Thi4 PF01946.12 gi|529078969|ref|YP_008377972.1| - 0.00058 19.0 0.6 0.0012 18.0 0.1 1.7 2 0 0 2 2 2 1 Thi4 family Pyr_redox PF00070.22 gi|529078969|ref|YP_008377972.1| - 0.0031 17.8 1.4 0.14 12.6 0.1 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|529078969|ref|YP_008377972.1| - 0.0051 16.9 0.4 0.011 15.8 0.3 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|529078969|ref|YP_008377972.1| - 0.048 13.3 0.4 0.048 13.3 0.3 2.0 2 1 1 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|529078969|ref|YP_008377972.1| - 0.054 13.4 0.4 0.19 11.7 0.1 2.0 2 0 0 2 2 2 0 NADH(P)-binding Aldo_ket_red PF00248.16 gi|529078970|ref|YP_008377973.1| - 5.8e-62 209.0 0.0 6.7e-62 208.8 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family DUF63 PF01889.12 gi|529078973|ref|YP_008377976.1| - 7.3e-36 124.6 14.9 9.7e-35 120.9 7.8 2.9 2 1 0 2 2 2 1 Membrane protein of unknown function DUF63 YcaO PF02624.11 gi|529078974|ref|YP_008377977.1| - 1.4e-64 218.7 9.5 1.5e-64 218.6 6.0 1.5 1 1 0 1 1 1 1 YcaO-like family DUF876 PF05936.7 gi|529078975|ref|YP_008377978.1| - 0.036 12.5 0.2 0.059 11.8 0.1 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF876) SHMT PF00464.14 gi|529078976|ref|YP_008377979.1| - 7.7e-151 502.0 0.0 9.2e-151 501.7 0.0 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.16 gi|529078976|ref|YP_008377979.1| - 6.2e-09 35.2 0.0 1.5e-08 34.0 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|529078976|ref|YP_008377979.1| - 0.0002 20.6 0.0 0.0037 16.4 0.0 2.1 1 1 0 1 1 1 1 Beta-eliminating lyase Trypsin_2 PF13365.1 gi|529078976|ref|YP_008377979.1| - 0.023 14.6 0.0 0.047 13.6 0.0 1.6 1 1 0 1 1 1 0 Trypsin-like peptidase domain DegT_DnrJ_EryC1 PF01041.12 gi|529078976|ref|YP_008377979.1| - 0.18 10.7 1.2 0.34 9.8 0.8 1.4 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family THF_DHG_CYH_C PF02882.14 gi|529078977|ref|YP_008377980.1| - 1.5e-67 225.6 1.5 2.1e-67 225.2 1.0 1.2 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.18 gi|529078977|ref|YP_008377980.1| - 2.3e-38 130.7 1.1 3.6e-38 130.1 0.7 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain HypA PF01155.14 gi|529078978|ref|YP_008377981.1| - 0.0038 16.8 0.7 0.0073 15.9 0.5 1.5 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|529078978|ref|YP_008377981.1| - 0.0071 16.1 0.5 0.014 15.2 0.3 1.4 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|529078978|ref|YP_008377981.1| - 0.022 13.9 1.3 4.7 6.5 0.1 2.6 2 0 0 2 2 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|529078978|ref|YP_008377981.1| - 0.029 13.8 0.5 0.069 12.6 0.4 1.6 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit FYVE_2 PF02318.11 gi|529078978|ref|YP_008377981.1| - 0.1 12.5 0.1 2.7 7.8 0.1 2.2 2 0 0 2 2 2 0 FYVE-type zinc finger zinc_ribbon_2 PF13240.1 gi|529078978|ref|YP_008377981.1| - 0.14 11.7 1.1 17 5.0 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-IS66 PF13005.2 gi|529078978|ref|YP_008377981.1| - 0.15 12.0 0.8 5.7 7.0 0.0 2.5 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 DUF1451 PF07295.6 gi|529078978|ref|YP_008377981.1| - 0.16 11.7 0.4 0.16 11.7 0.3 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF1451) FYDLN_acid PF09538.5 gi|529078978|ref|YP_008377981.1| - 0.18 12.3 1.4 0.49 11.0 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (FYDLN_acid) Zn-ribbon_8 PF09723.5 gi|529078978|ref|YP_008377981.1| - 0.19 11.7 1.7 0.54 10.2 1.2 1.8 1 1 0 1 1 1 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|529078978|ref|YP_008377981.1| - 0.2 11.0 1.7 0.49 9.7 1.2 1.7 1 0 0 1 1 1 0 TFIIB zinc-binding PhnA_Zn_Ribbon PF08274.7 gi|529078978|ref|YP_008377981.1| - 0.34 10.7 2.7 0.56 10.0 1.9 1.3 1 0 0 1 1 1 0 PhnA Zinc-Ribbon UPF0547 PF10571.4 gi|529078978|ref|YP_008377981.1| - 0.37 10.5 2.4 0.29 10.8 0.5 1.7 2 0 0 2 2 1 0 Uncharacterised protein family UPF0547 Zn_Tnp_IS1595 PF12760.2 gi|529078978|ref|YP_008377981.1| - 0.46 10.3 3.8 13 5.6 0.1 2.6 1 1 1 2 2 2 0 Transposase zinc-ribbon domain TFIIS_C PF01096.13 gi|529078978|ref|YP_008377981.1| - 1.8 8.2 6.1 8.2 6.1 0.5 2.8 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) PadR PF03551.9 gi|529078979|ref|YP_008377982.1| - 1.2e-17 63.3 2.0 1.5e-17 63.1 1.4 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|529078979|ref|YP_008377982.1| - 0.00011 22.4 0.0 0.00014 22.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF1495 PF07381.6 gi|529078979|ref|YP_008377982.1| - 0.0025 17.4 0.0 0.0038 16.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.1 gi|529078979|ref|YP_008377982.1| - 0.0037 17.0 0.1 0.0049 16.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_34 PF13601.1 gi|529078979|ref|YP_008377982.1| - 0.022 14.7 0.0 0.027 14.4 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|529078979|ref|YP_008377982.1| - 0.033 13.8 0.8 2.2 7.9 0.1 2.5 3 0 0 3 3 3 0 MarR family TrmB PF01978.14 gi|529078979|ref|YP_008377982.1| - 0.077 12.7 0.1 0.11 12.2 0.1 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.11 gi|529078979|ref|YP_008377982.1| - 0.11 12.6 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Penicillinase repressor HemN_C PF06969.11 gi|529078979|ref|YP_008377982.1| - 0.11 12.5 0.0 0.19 11.8 0.0 1.5 1 1 0 1 1 1 0 HemN C-terminal domain DUF3588 PF12140.3 gi|529078980|ref|YP_008377983.1| - 0.084 12.9 0.0 0.1 12.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3588) HhH-GPD PF00730.20 gi|529078981|ref|YP_008377984.1| - 9e-17 61.3 0.0 1.4e-16 60.7 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|529078981|ref|YP_008377984.1| - 8.3e-07 28.3 0.0 1.8e-06 27.2 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif KapB PF08810.5 gi|529078981|ref|YP_008377984.1| - 0.11 12.5 0.0 0.23 11.5 0.0 1.5 1 0 0 1 1 1 0 Kinase associated protein B DUF4095 PF13338.1 gi|529078982|ref|YP_008377985.1| - 4.5e-25 88.1 0.1 6.2e-25 87.7 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4095) DUF1814 PF08843.6 gi|529078983|ref|YP_008377986.1| - 6.6e-35 120.9 0.3 7.8e-35 120.7 0.2 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF1814) ABC_tran PF00005.22 gi|529078984|ref|YP_008377987.1| - 4.4e-26 91.8 0.0 6.9e-26 91.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|529078984|ref|YP_008377987.1| - 0.00043 19.5 0.0 0.00055 19.2 0.0 1.1 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain ABC_ATPase PF09818.4 gi|529078984|ref|YP_008377987.1| - 0.011 14.4 0.1 0.015 13.9 0.1 1.2 1 0 0 1 1 1 0 Predicted ATPase of the ABC class FMN_red PF03358.10 gi|529078985|ref|YP_008377988.1| - 1.6e-34 118.6 0.0 1.9e-34 118.3 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|529078985|ref|YP_008377988.1| - 9e-11 41.6 0.0 1.9e-10 40.5 0.0 1.5 1 1 0 1 1 1 1 Flavodoxin-like fold Yip1 PF04893.12 gi|529078986|ref|YP_008377989.1| - 4.6e-10 39.2 12.7 7.7e-10 38.5 8.8 1.3 1 1 0 1 1 1 1 Yip1 domain tRNA_anti-codon PF01336.20 gi|529078987|ref|YP_008377990.1| - 2.3e-12 46.5 0.2 1.2e-11 44.2 0.1 2.2 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain S1 PF00575.18 gi|529078987|ref|YP_008377990.1| - 8e-11 41.8 0.1 4.7e-10 39.4 0.0 2.4 2 1 0 2 2 2 1 S1 RNA binding domain tRNA_anti_2 PF13742.1 gi|529078987|ref|YP_008377990.1| - 0.00035 20.3 0.0 0.001 18.9 0.0 1.8 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1_2 PF13509.1 gi|529078987|ref|YP_008377990.1| - 0.028 14.3 0.0 0.082 12.8 0.0 1.8 1 0 0 1 1 1 0 S1 domain AF-4 PF05110.8 gi|529078987|ref|YP_008377990.1| - 2 6.1 8.5 2.7 5.7 5.9 1.0 1 0 0 1 1 1 0 AF-4 proto-oncoprotein Radical_SAM PF04055.16 gi|529078988|ref|YP_008377991.1| - 5.9e-23 81.8 0.0 1.4e-22 80.6 0.0 1.7 1 0 0 1 1 1 1 Radical SAM superfamily Acetyltransf_1 PF00583.19 gi|529078988|ref|YP_008377991.1| - 2.9e-06 27.2 0.2 7.8e-06 25.8 0.2 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family UPF0236 PF06782.6 gi|529078989|ref|YP_008377992.1| - 4.1e-07 28.7 0.1 3.2e-05 22.5 0.0 2.2 2 0 0 2 2 2 2 Uncharacterised protein family (UPF0236) Transposase_mut PF00872.13 gi|529078989|ref|YP_008377992.1| - 9.9e-05 21.0 1.5 0.024 13.2 0.1 2.5 2 1 0 2 2 2 2 Transposase, Mutator family OmdA PF13376.1 gi|529078990|ref|YP_008377993.1| - 0.018 14.6 0.2 0.033 13.8 0.0 1.5 2 0 0 2 2 2 0 Bacteriocin-protection, YdeI or OmpD-Associated RHH_1 PF01402.16 gi|529078990|ref|YP_008377993.1| - 0.29 11.1 0.0 0.29 11.1 0.0 3.0 3 1 0 3 3 3 0 Ribbon-helix-helix protein, copG family FbpA PF05833.6 gi|529078991|ref|YP_008377994.1| - 5.4e-88 295.5 0.1 7.1e-88 295.1 0.0 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|529078991|ref|YP_008377994.1| - 3.7e-26 90.8 0.0 6.2e-26 90.1 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF814) THOC7 PF05615.8 gi|529078991|ref|YP_008377994.1| - 2.4 8.4 10.4 0.6 10.3 1.4 2.8 3 0 0 3 3 3 0 Tho complex subunit 7 DUF422 PF04240.7 gi|529078992|ref|YP_008377995.1| - 2.1e-10 40.3 20.8 2.1e-10 40.3 14.4 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF422) eRF1_1 PF03463.10 gi|529078993|ref|YP_008377996.1| - 2.2e-33 114.6 0.2 4e-33 113.8 0.1 1.4 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.10 gi|529078993|ref|YP_008377996.1| - 6.4e-23 81.1 0.0 2.9e-22 79.0 0.0 2.1 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_2 PF03464.10 gi|529078993|ref|YP_008377996.1| - 2.5e-19 69.9 0.0 4.2e-19 69.1 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 HATPase_c PF02518.21 gi|529078994|ref|YP_008377997.1| - 2.3e-14 53.0 0.0 4.2e-14 52.2 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.1 gi|529078994|ref|YP_008377997.1| - 1.4e-11 44.6 0.3 2.5e-11 43.7 0.2 1.5 1 0 0 1 1 1 1 GAF domain GAF_2 PF13185.1 gi|529078994|ref|YP_008377997.1| - 2.2e-05 24.9 0.9 4.4e-05 23.9 0.3 1.7 2 0 0 2 2 2 1 GAF domain GAF PF01590.21 gi|529078994|ref|YP_008377997.1| - 3.5e-05 23.9 0.4 5.7e-05 23.2 0.3 1.4 1 0 0 1 1 1 1 GAF domain HisKA PF00512.20 gi|529078994|ref|YP_008377997.1| - 3.9e-05 23.5 2.4 4.2e-05 23.4 0.0 2.4 3 1 0 3 3 3 1 His Kinase A (phospho-acceptor) domain SPOB_a PF14689.1 gi|529078994|ref|YP_008377997.1| - 9.3e-05 21.9 0.1 0.00024 20.5 0.1 1.8 1 1 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain Syntaxin-6_N PF09177.6 gi|529078994|ref|YP_008377997.1| - 0.08 13.3 0.2 1.3 9.4 0.0 2.3 2 0 0 2 2 2 0 Syntaxin 6, N-terminal Syntaxin_2 PF14523.1 gi|529078994|ref|YP_008377997.1| - 0.086 12.8 0.0 0.58 10.2 0.0 2.1 1 1 1 2 2 2 0 Syntaxin-like protein Pyridox_oxidase PF01243.15 gi|529078995|ref|YP_008377998.1| - 3e-14 52.8 0.0 3.7e-14 52.4 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Lactamase_B_2 PF12706.2 gi|529078996|ref|YP_008377999.1| - 4.6e-22 78.5 0.3 5.6e-22 78.2 0.2 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|529078996|ref|YP_008377999.1| - 3.4e-10 39.8 6.1 3.4e-10 39.8 4.2 1.8 1 1 1 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|529078996|ref|YP_008377999.1| - 0.012 15.3 0.0 0.023 14.4 0.0 1.5 1 0 0 1 1 1 0 Beta-lactamase superfamily domain tRNA-synt_1 PF00133.17 gi|529078997|ref|YP_008378000.1| - 1.9e-63 214.4 0.0 2.7e-25 88.4 0.1 4.7 1 1 3 4 4 4 4 tRNA synthetases class I (I, L, M and V) tRNA-synt_1_2 PF13603.1 gi|529078997|ref|YP_008378000.1| - 1.3e-57 194.1 0.0 1.9e-57 193.5 0.0 1.3 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1g PF09334.6 gi|529078997|ref|YP_008378000.1| - 9.4e-37 126.5 0.0 1.1e-29 103.3 0.0 3.9 4 0 0 4 4 4 2 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|529078997|ref|YP_008378000.1| - 1.8e-11 44.0 0.0 4.8e-11 42.6 0.0 1.7 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1f PF01921.13 gi|529078997|ref|YP_008378000.1| - 0.00089 18.0 0.0 0.2 10.2 0.0 2.9 2 1 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1e PF01406.14 gi|529078997|ref|YP_008378000.1| - 0.044 12.8 0.0 1.5 7.9 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain DZR PF12773.2 gi|529078997|ref|YP_008378000.1| - 0.052 13.3 5.6 2.5 7.9 0.2 2.7 2 1 0 2 2 2 0 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|529078997|ref|YP_008378000.1| - 0.12 11.7 8.2 5.5 6.3 0.2 3.6 3 0 0 3 3 3 0 TFIIB zinc-binding tRNA-synt_1d PF00750.14 gi|529078997|ref|YP_008378000.1| - 0.2 10.4 0.0 1.7 7.4 0.0 2.0 2 0 0 2 2 2 0 tRNA synthetases class I (R) Zn-ribbon_8 PF09723.5 gi|529078997|ref|YP_008378000.1| - 0.26 11.2 2.7 1.1 9.2 0.1 3.1 3 0 0 3 3 3 0 Zinc ribbon domain Rpr2 PF04032.11 gi|529078997|ref|YP_008378000.1| - 0.26 11.1 0.0 1.9 8.3 0.0 2.3 2 0 0 2 2 2 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain zf-ribbon_3 PF13248.1 gi|529078997|ref|YP_008378000.1| - 4 6.7 9.4 2.1 7.6 0.1 3.4 4 0 0 4 4 4 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|529078997|ref|YP_008378000.1| - 9.3 5.8 7.5 1.5 8.4 0.1 3.0 3 0 0 3 3 3 0 zinc-ribbon domain TetR_C_6 PF13977.1 gi|529078998|ref|YP_008378001.1| - 3.5e-12 46.3 2.4 3.5e-12 46.3 1.7 1.7 3 0 0 3 3 3 1 Bacterial transcriptional repressor TetR_N PF00440.18 gi|529078998|ref|YP_008378001.1| - 9e-10 38.0 0.3 1.7e-09 37.1 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family WHG PF13305.1 gi|529078998|ref|YP_008378001.1| - 0.055 14.0 0.4 0.31 11.6 0.0 2.3 3 0 0 3 3 3 0 WHG domain DUF3139 PF11337.3 gi|529078998|ref|YP_008378001.1| - 0.059 13.6 0.1 0.098 12.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3139) UPF0236 PF06782.6 gi|529078999|ref|YP_008378002.1| - 4.1e-07 28.7 0.1 3.2e-05 22.5 0.0 2.2 2 0 0 2 2 2 2 Uncharacterised protein family (UPF0236) Transposase_mut PF00872.13 gi|529078999|ref|YP_008378002.1| - 9.9e-05 21.0 1.5 0.024 13.2 0.1 2.5 2 1 0 2 2 2 2 Transposase, Mutator family GCS2 PF04107.8 gi|529079000|ref|YP_008378003.1| - 0.043 12.9 0.0 0.065 12.3 0.0 1.2 1 0 0 1 1 1 0 Glutamate-cysteine ligase family 2(GCS2) MMPL PF03176.10 gi|529079001|ref|YP_008378004.1| - 2.7e-36 124.9 31.8 5.8e-26 90.9 7.1 4.4 5 1 1 6 6 6 2 MMPL family Sterol-sensing PF12349.3 gi|529079001|ref|YP_008378004.1| - 2.5e-13 49.7 7.9 5.9e-08 32.3 0.6 2.4 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation Patched PF02460.13 gi|529079001|ref|YP_008378004.1| - 1.8e-07 29.5 20.2 2.4e-06 25.8 3.0 2.4 2 0 0 2 2 2 2 Patched family SecD_SecF PF02355.11 gi|529079001|ref|YP_008378004.1| - 3.2e-05 23.1 20.4 0.00035 19.8 2.0 2.5 2 0 0 2 2 2 2 Protein export membrane protein AAA_13 PF13166.1 gi|529079001|ref|YP_008378004.1| - 0.0092 14.5 10.8 0.013 13.9 7.5 1.1 1 0 0 1 1 1 1 AAA domain Filament PF00038.16 gi|529079001|ref|YP_008378004.1| - 0.47 9.8 18.4 1 8.7 12.7 1.4 1 0 0 1 1 1 0 Intermediate filament protein DUF904 PF06005.7 gi|529079001|ref|YP_008378004.1| - 0.53 10.6 16.0 4.8 7.5 4.3 3.0 2 1 0 2 2 2 0 Protein of unknown function (DUF904) DUF4200 PF13863.1 gi|529079001|ref|YP_008378004.1| - 0.96 9.4 16.0 0.49 10.3 4.8 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) NPV_P10 PF05531.7 gi|529079001|ref|YP_008378004.1| - 1.2 9.4 9.5 1.9 8.7 0.6 3.5 2 1 1 3 3 3 0 Nucleopolyhedrovirus P10 protein Prominin PF05478.6 gi|529079001|ref|YP_008378004.1| - 1.2 6.5 5.2 2 5.8 3.6 1.3 1 0 0 1 1 1 0 Prominin Spc7 PF08317.6 gi|529079001|ref|YP_008378004.1| - 3 6.4 13.3 2.8 6.4 0.3 2.2 1 1 0 2 2 2 0 Spc7 kinetochore protein Mod_r PF07200.8 gi|529079001|ref|YP_008378004.1| - 8.3 6.3 13.7 0.85 9.5 2.5 2.5 2 0 0 2 2 2 0 Modifier of rudimentary (Mod(r)) protein NTP_transferase PF00483.18 gi|529079002|ref|YP_008378005.1| - 2.7e-38 131.6 0.0 4.4e-38 130.9 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|529079002|ref|YP_008378005.1| - 4.4e-18 65.8 0.3 7e-18 65.2 0.2 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|529079002|ref|YP_008378005.1| - 2.2e-11 42.7 15.6 1.9e-06 27.1 2.0 4.5 2 1 3 5 5 5 4 Bacterial transferase hexapeptide (six repeats) IspD PF01128.14 gi|529079002|ref|YP_008378005.1| - 0.00046 19.7 0.0 0.00071 19.1 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep_2 PF14602.1 gi|529079002|ref|YP_008378005.1| - 0.0016 17.9 9.8 0.015 14.8 0.1 3.4 4 0 0 4 4 4 2 Hexapeptide repeat of succinyl-transferase Glyco_tranf_2_3 PF13641.1 gi|529079002|ref|YP_008378005.1| - 0.093 12.5 0.4 0.19 11.5 0.3 1.4 1 0 0 1 1 1 0 Glycosyltransferase like family 2 CTP_transf_3 PF02348.14 gi|529079002|ref|YP_008378005.1| - 0.1 12.1 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 Cytidylyltransferase tRNA-synt_1g PF09334.6 gi|529079003|ref|YP_008378006.1| - 3.6e-128 427.5 0.0 8e-128 426.4 0.0 1.6 1 1 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.15 gi|529079003|ref|YP_008378006.1| - 3.9e-21 74.6 0.1 6.3e-21 74.0 0.0 1.3 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.17 gi|529079003|ref|YP_008378006.1| - 3.1e-16 58.5 0.8 2.5e-08 32.4 0.2 3.1 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|529079003|ref|YP_008378006.1| - 2e-08 34.1 0.0 3.7e-08 33.2 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|529079003|ref|YP_008378006.1| - 6.7e-08 31.9 0.0 6.5e-05 22.1 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1d PF00750.14 gi|529079003|ref|YP_008378006.1| - 7.4e-05 21.7 1.0 0.025 13.4 0.1 2.4 1 1 1 2 2 2 2 tRNA synthetases class I (R) tRNA-synt_1f PF01921.13 gi|529079003|ref|YP_008378006.1| - 0.032 12.9 2.7 0.33 9.5 0.1 3.0 3 1 1 4 4 4 0 tRNA synthetases class I (K) MarR PF01047.17 gi|529079005|ref|YP_008378008.1| - 0.00012 21.7 0.0 0.00016 21.3 0.0 1.2 1 0 0 1 1 1 1 MarR family B-block_TFIIIC PF04182.7 gi|529079005|ref|YP_008378008.1| - 0.0032 17.2 0.0 0.0035 17.1 0.0 1.3 1 1 0 1 1 1 1 B-block binding subunit of TFIIIC TrmB PF01978.14 gi|529079005|ref|YP_008378008.1| - 0.063 12.9 0.0 0.083 12.6 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|529079005|ref|YP_008378008.1| - 0.064 12.9 0.0 0.095 12.3 0.0 1.3 1 0 0 1 1 1 0 MarR family SBP_bac_6 PF13343.1 gi|529079006|ref|YP_008378009.1| - 2.8e-17 62.8 0.0 5.3e-17 61.9 0.0 1.4 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|529079006|ref|YP_008378009.1| - 1.2e-15 58.0 3.0 1.6e-15 57.6 2.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|529079006|ref|YP_008378009.1| - 1.1e-09 38.4 3.8 1.7e-09 37.8 2.7 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|529079006|ref|YP_008378009.1| - 1.7e-05 24.5 0.1 3e-05 23.7 0.1 1.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|529079006|ref|YP_008378009.1| - 3.3 7.9 6.0 9.1 6.5 4.1 1.8 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.17 gi|529079007|ref|YP_008378010.1| - 1.6e-26 92.9 31.4 5.8e-16 58.5 7.7 3.2 3 1 1 4 4 4 2 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|529079008|ref|YP_008378011.1| - 5.7e-34 117.3 0.0 8.6e-34 116.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|529079008|ref|YP_008378011.1| - 7.3e-13 48.3 0.5 1e-11 44.6 0.3 2.9 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.1 gi|529079008|ref|YP_008378011.1| - 1.1e-07 32.0 0.0 0.00086 19.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|529079008|ref|YP_008378011.1| - 0.0011 18.4 0.4 0.0071 15.7 0.3 2.1 1 1 0 1 1 1 1 AAA domain TOBE PF03459.12 gi|529079008|ref|YP_008378011.1| - 0.0011 18.9 0.9 0.031 14.3 0.1 3.2 2 1 0 2 2 2 1 TOBE domain AAA_16 PF13191.1 gi|529079008|ref|YP_008378011.1| - 0.0031 17.5 2.0 0.0049 16.8 0.1 2.0 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|529079008|ref|YP_008378011.1| - 0.0031 16.7 0.0 0.17 11.1 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|529079008|ref|YP_008378011.1| - 0.0033 17.6 0.1 0.023 14.9 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|529079008|ref|YP_008378011.1| - 0.0077 16.3 0.5 0.019 15.1 0.1 1.7 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|529079008|ref|YP_008378011.1| - 0.016 15.0 1.3 0.1 12.4 0.9 2.1 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|529079008|ref|YP_008378011.1| - 0.022 13.4 0.0 0.031 12.9 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_29 PF13555.1 gi|529079008|ref|YP_008378011.1| - 0.067 12.7 0.0 0.16 11.5 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF258 PF03193.11 gi|529079008|ref|YP_008378011.1| - 0.071 12.3 0.0 0.12 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SRP54 PF00448.17 gi|529079008|ref|YP_008378011.1| - 0.1 12.0 0.2 0.26 10.6 0.1 1.5 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_14 PF13173.1 gi|529079008|ref|YP_008378011.1| - 0.14 12.0 0.0 0.32 10.9 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|529079008|ref|YP_008378011.1| - 0.16 12.2 0.2 0.66 10.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|529079008|ref|YP_008378011.1| - 0.17 12.6 1.5 0.55 11.0 0.3 2.0 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.1 gi|529079008|ref|YP_008378011.1| - 0.23 10.4 0.0 2.2 7.2 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain AAA_28 PF13521.1 gi|529079008|ref|YP_008378011.1| - 0.45 10.4 4.1 0.099 12.6 0.4 1.7 2 0 0 2 2 1 0 AAA domain AIRS_C PF02769.17 gi|529079009|ref|YP_008378012.1| - 1.9e-18 66.9 2.7 2.8e-18 66.3 1.9 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|529079009|ref|YP_008378012.1| - 4.4e-09 36.4 0.1 1.6e-08 34.6 0.1 2.0 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AMP-binding PF00501.23 gi|529079010|ref|YP_008378013.1| - 1.9e-80 270.3 0.6 2.2e-80 270.0 0.4 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|529079010|ref|YP_008378013.1| - 5.8e-17 62.4 0.6 1.3e-16 61.2 0.4 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain MR_MLE_C PF13378.1 gi|529079011|ref|YP_008378014.1| - 1.6e-15 57.0 2.6 3.5e-15 55.9 0.3 2.4 3 0 0 3 3 3 1 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|529079011|ref|YP_008378014.1| - 4.1e-14 52.8 4.6 4.3e-14 52.7 1.6 2.2 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain FTR PF01913.13 gi|529079011|ref|YP_008378014.1| - 0.011 15.4 0.2 0.038 13.7 0.0 1.9 1 1 0 1 1 1 0 Formylmethanofuran-tetrahydromethanopterin formyltransferase MR_MLE_N PF02746.11 gi|529079011|ref|YP_008378014.1| - 0.048 13.6 0.9 0.15 12.0 0.1 2.4 2 1 0 2 2 2 0 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain UbiA PF01040.13 gi|529079012|ref|YP_008378015.1| - 2.3e-38 131.9 21.6 2.9e-38 131.5 15.0 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF4131 PF13567.1 gi|529079012|ref|YP_008378015.1| - 0.0084 15.5 2.7 0.0094 15.3 0.9 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4131) Phage_holin_5 PF06946.6 gi|529079012|ref|YP_008378015.1| - 8.8 6.5 8.6 0.65 10.1 0.6 2.6 3 0 0 3 3 3 0 Phage holin ECH PF00378.15 gi|529079013|ref|YP_008378016.1| - 6.7e-47 159.6 0.0 9.9e-47 159.1 0.0 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family TrkA_N PF02254.13 gi|529079014|ref|YP_008378017.1| - 4.9e-21 74.8 1.7 4.9e-21 74.8 1.2 2.0 2 0 0 2 2 1 1 TrkA-N domain DHH PF01368.15 gi|529079014|ref|YP_008378017.1| - 8.4e-14 51.4 1.3 1.4e-13 50.6 0.2 1.9 2 0 0 2 2 2 1 DHH family ApbA PF02558.11 gi|529079014|ref|YP_008378017.1| - 4e-08 32.8 0.0 2.5e-07 30.2 0.0 2.2 1 1 1 2 2 2 1 Ketopantoate reductase PanE/ApbA Saccharop_dh PF03435.13 gi|529079014|ref|YP_008378017.1| - 8.1e-08 31.6 0.3 1.6e-07 30.6 0.2 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase F420_oxidored PF03807.12 gi|529079014|ref|YP_008378017.1| - 1.5e-06 28.4 2.5 5.1e-06 26.8 0.1 2.9 3 1 1 4 4 3 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|529079014|ref|YP_008378017.1| - 9e-06 25.6 0.0 1.8e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|529079014|ref|YP_008378017.1| - 9.7e-06 25.3 0.0 4e-05 23.4 0.0 2.0 1 1 1 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Shikimate_DH PF01488.15 gi|529079014|ref|YP_008378017.1| - 2.7e-05 24.2 0.4 9.3e-05 22.5 0.1 2.0 1 1 1 2 2 2 1 Shikimate / quinate 5-dehydrogenase IlvN PF07991.7 gi|529079014|ref|YP_008378017.1| - 3.8e-05 23.1 0.1 8.1e-05 22.0 0.1 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_10 PF13460.1 gi|529079014|ref|YP_008378017.1| - 5.3e-05 23.2 2.9 0.00011 22.2 1.4 2.1 2 1 1 3 3 3 1 NADH(P)-binding DHHA1 PF02272.14 gi|529079014|ref|YP_008378017.1| - 0.00073 19.1 0.0 0.0019 17.8 0.0 1.8 1 0 0 1 1 1 1 DHHA1 domain UDPG_MGDP_dh_N PF03721.9 gi|529079014|ref|YP_008378017.1| - 0.0013 18.1 0.0 0.0049 16.2 0.0 1.8 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAD_binding_3 PF01494.14 gi|529079014|ref|YP_008378017.1| - 0.0016 17.5 0.0 0.0027 16.8 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain 3HCDH_N PF02737.13 gi|529079014|ref|YP_008378017.1| - 0.0028 17.3 0.0 0.008 15.8 0.0 1.9 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|529079014|ref|YP_008378017.1| - 0.0043 16.2 0.0 0.011 14.8 0.0 1.7 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|529079014|ref|YP_008378017.1| - 0.0044 17.2 2.4 0.013 15.7 0.6 2.3 1 1 1 2 2 2 1 Putative NAD(P)-binding ThiF PF00899.16 gi|529079014|ref|YP_008378017.1| - 0.015 15.1 2.2 0.13 12.1 1.5 2.7 1 1 0 1 1 1 0 ThiF family XdhC_C PF13478.1 gi|529079014|ref|YP_008378017.1| - 0.02 15.2 0.9 0.15 12.4 0.1 2.4 1 1 1 2 2 2 0 XdhC Rossmann domain DAO PF01266.19 gi|529079014|ref|YP_008378017.1| - 0.032 13.1 0.1 0.085 11.7 0.0 1.7 2 0 0 2 2 2 0 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|529079014|ref|YP_008378017.1| - 0.034 14.1 0.0 0.084 12.9 0.0 1.7 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Epimerase PF01370.16 gi|529079014|ref|YP_008378017.1| - 0.058 12.8 0.9 0.15 11.5 0.1 2.0 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family ADH_zinc_N PF00107.21 gi|529079014|ref|YP_008378017.1| - 0.074 12.5 0.4 0.62 9.6 0.1 2.5 3 0 0 3 3 3 0 Zinc-binding dehydrogenase YflT PF11181.3 gi|529079014|ref|YP_008378017.1| - 0.1 12.7 1.2 0.45 10.6 0.1 2.5 3 0 0 3 3 2 0 Heat induced stress protein YflT NAD_binding_3 PF03447.11 gi|529079014|ref|YP_008378017.1| - 0.12 12.7 1.9 0.61 10.5 1.3 2.4 1 1 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain adh_short PF00106.20 gi|529079014|ref|YP_008378017.1| - 0.46 10.3 8.5 0.2 11.5 0.7 3.1 2 1 1 3 3 3 0 short chain dehydrogenase Y1_Tnp PF01797.11 gi|529079015|ref|YP_008378018.1| - 9.9e-37 125.4 0.0 1.1e-36 125.3 0.0 1.0 1 0 0 1 1 1 1 Transposase IS200 like Patched PF02460.13 gi|529079015|ref|YP_008378018.1| - 0.049 11.5 0.0 0.056 11.3 0.0 1.0 1 0 0 1 1 1 0 Patched family Nepo_coat PF03391.10 gi|529079015|ref|YP_008378018.1| - 0.13 11.5 0.0 0.19 10.9 0.0 1.3 1 0 0 1 1 1 0 Nepovirus coat protein, central domain OrfB_Zn_ribbon PF07282.6 gi|529079016|ref|YP_008378019.1| - 3e-24 84.4 0.3 5.7e-24 83.5 0.2 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|529079016|ref|YP_008378019.1| - 0.0025 17.2 0.0 0.0038 16.6 0.0 1.2 1 0 0 1 1 1 1 Probable transposase MarR_2 PF12802.2 gi|529079017|ref|YP_008378020.1| - 1.5e-07 30.9 0.0 2.1e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|529079017|ref|YP_008378020.1| - 3.1e-06 26.6 0.1 5.8e-06 25.7 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|529079017|ref|YP_008378020.1| - 1e-05 25.1 0.0 1.8e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|529079017|ref|YP_008378020.1| - 0.00032 20.7 0.0 0.00047 20.2 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator Sulfolobus_pRN PF05584.6 gi|529079017|ref|YP_008378020.1| - 0.0016 18.3 0.0 0.002 18.0 0.0 1.1 1 0 0 1 1 1 1 Sulfolobus plasmid regulatory protein HTH_24 PF13412.1 gi|529079017|ref|YP_008378020.1| - 0.0018 17.6 0.0 0.0025 17.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.1 gi|529079017|ref|YP_008378020.1| - 0.002 17.9 0.0 0.0029 17.3 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_27 PF13463.1 gi|529079017|ref|YP_008378020.1| - 0.0023 18.1 0.0 0.0033 17.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|529079017|ref|YP_008378020.1| - 0.0033 17.0 0.0 0.005 16.5 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|529079017|ref|YP_008378020.1| - 0.0083 15.9 0.0 0.012 15.4 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain PemK PF02452.12 gi|529079018|ref|YP_008378021.1| - 0.0048 17.0 0.0 0.005 17.0 0.0 1.0 1 0 0 1 1 1 1 PemK-like protein DUF1028 PF06267.7 gi|529079019|ref|YP_008378022.1| - 7.5e-46 155.9 0.0 9.1e-46 155.6 0.0 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF1028) ELFV_dehydrog PF00208.16 gi|529079020|ref|YP_008378023.1| - 1.1e-69 234.7 0.1 1.4e-69 234.3 0.1 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|529079020|ref|YP_008378023.1| - 9.4e-50 167.5 0.0 1.5e-49 166.9 0.0 1.3 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|529079020|ref|YP_008378023.1| - 0.0054 15.8 0.4 0.029 13.5 0.0 2.1 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Oxidored_nitro PF00148.14 gi|529079020|ref|YP_008378023.1| - 0.0067 15.1 0.1 0.0096 14.5 0.0 1.2 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase AlaDh_PNT_C PF01262.16 gi|529079020|ref|YP_008378023.1| - 0.01 15.3 0.2 0.024 14.2 0.0 1.6 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Malic_M PF03949.10 gi|529079020|ref|YP_008378023.1| - 0.044 13.3 0.0 0.068 12.7 0.0 1.3 1 0 0 1 1 1 0 Malic enzyme, NAD binding domain Polyketide_cyc2 PF10604.4 gi|529079021|ref|YP_008378024.1| - 2.1e-10 40.9 1.7 2.3e-10 40.8 1.2 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|529079021|ref|YP_008378024.1| - 9e-09 35.4 0.0 1.1e-08 35.0 0.0 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport EamA PF00892.15 gi|529079022|ref|YP_008378025.1| - 5.1e-27 94.4 27.6 2e-13 50.4 8.2 2.1 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|529079022|ref|YP_008378025.1| - 8.7e-06 25.9 8.9 8.7e-06 25.9 6.1 3.4 2 2 1 3 3 3 1 Multidrug resistance efflux transporter RIO1 PF01163.17 gi|529079023|ref|YP_008378026.1| - 3.4e-10 39.5 0.0 5.7e-10 38.8 0.0 1.2 1 0 0 1 1 1 1 RIO1 family APH PF01636.18 gi|529079023|ref|YP_008378026.1| - 3.8e-06 26.8 1.1 0.037 13.7 0.3 2.3 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.20 gi|529079023|ref|YP_008378026.1| - 0.00029 20.0 0.0 0.00041 19.5 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain Kdo PF06293.9 gi|529079023|ref|YP_008378026.1| - 0.00049 19.2 0.0 0.0011 18.0 0.0 1.5 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family DUF1464 PF07318.7 gi|529079023|ref|YP_008378026.1| - 0.031 13.1 0.0 0.045 12.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1464) WaaY PF06176.6 gi|529079023|ref|YP_008378026.1| - 0.074 12.2 0.0 0.11 11.7 0.0 1.2 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) Acetyltransf_3 PF13302.1 gi|529079024|ref|YP_008378027.1| - 6.5e-28 97.6 0.0 7.6e-28 97.4 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|529079024|ref|YP_008378027.1| - 1.3e-15 57.6 0.0 1.5e-15 57.4 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|529079024|ref|YP_008378027.1| - 5.9e-12 45.4 0.2 9.1e-12 44.8 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.1 gi|529079024|ref|YP_008378027.1| - 8.7e-08 32.1 0.0 3.5e-07 30.2 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|529079024|ref|YP_008378027.1| - 0.0024 17.9 0.0 0.0029 17.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|529079024|ref|YP_008378027.1| - 0.0038 16.9 0.0 0.0089 15.7 0.0 1.6 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_7 PF13508.1 gi|529079024|ref|YP_008378027.1| - 0.027 14.6 0.0 0.039 14.1 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain HhH-GPD PF00730.20 gi|529079025|ref|YP_008378028.1| - 6.7e-22 77.8 0.0 9e-22 77.4 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|529079025|ref|YP_008378028.1| - 4.3e-11 41.8 0.0 2e-10 39.7 0.0 2.2 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|529079025|ref|YP_008378028.1| - 0.00048 20.2 0.1 0.021 15.0 0.0 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix domain EndIII_4Fe-2S PF10576.4 gi|529079025|ref|YP_008378028.1| - 0.0019 18.3 4.5 0.0034 17.4 3.1 1.5 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III IMS_HHH PF11798.3 gi|529079025|ref|YP_008378028.1| - 0.014 15.4 0.0 0.032 14.2 0.0 1.6 1 0 0 1 1 1 0 IMS family HHH motif Noelin-1 PF12308.3 gi|529079025|ref|YP_008378028.1| - 0.051 13.3 0.2 0.11 12.3 0.1 1.5 1 0 0 1 1 1 0 Neurogenesis glycoprotein HHH_8 PF14716.1 gi|529079025|ref|YP_008378028.1| - 0.14 12.3 0.0 0.35 11.0 0.0 1.6 1 1 0 1 1 1 0 Helix-hairpin-helix domain Cytochrom_B561 PF03188.11 gi|529079026|ref|YP_008378029.1| - 1.1 9.0 7.1 0.097 12.4 1.5 1.7 2 0 0 2 2 2 0 Eukaryotic cytochrome b561 IncA PF04156.9 gi|529079028|ref|YP_008378031.1| - 7.3 6.1 5.6 1.5 8.4 1.6 1.5 2 0 0 2 2 2 0 IncA protein Copper-bind PF00127.15 gi|529079029|ref|YP_008378032.1| - 4.7e-13 49.2 0.1 1.8e-12 47.2 0.1 1.9 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.4 gi|529079029|ref|YP_008378032.1| - 1.1 9.4 15.8 0.067 13.2 6.6 2.4 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence UPF0104 PF03706.8 gi|529079030|ref|YP_008378033.1| - 0.0023 17.2 0.1 0.0026 17.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) Rieske PF00355.21 gi|529079031|ref|YP_008378034.1| - 2e-07 30.4 0.1 3.9e-07 29.5 0.1 1.4 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Cytochrom_B_N_2 PF13631.1 gi|529079032|ref|YP_008378035.1| - 2e-40 138.3 9.9 2e-40 138.3 6.9 1.9 2 0 0 2 2 2 1 Cytochrome b(N-terminal)/b6/petB Cytochrom_B_N PF00033.14 gi|529079032|ref|YP_008378035.1| - 6.6e-13 48.4 15.0 9.4e-13 47.9 10.4 1.2 1 0 0 1 1 1 1 Cytochrome b(N-terminal)/b6/petB COX15-CtaA PF02628.10 gi|529079032|ref|YP_008378035.1| - 0.00038 19.4 2.4 0.00038 19.4 1.7 1.7 1 1 1 2 2 2 1 Cytochrome oxidase assembly protein Ni_hydr_CYTB PF01292.15 gi|529079032|ref|YP_008378035.1| - 0.037 13.4 19.2 0.13 11.6 3.3 2.2 1 1 1 2 2 2 0 Prokaryotic cytochrome b561 PepSY_TM PF03929.11 gi|529079032|ref|YP_008378035.1| - 0.41 11.1 0.1 0.41 11.1 0.1 4.3 4 1 0 4 4 4 0 PepSY-associated TM helix Cytochrom_B_C PF00032.12 gi|529079033|ref|YP_008378036.1| - 6.4e-08 32.7 0.0 1.2e-07 31.8 0.0 1.5 1 1 0 1 1 1 1 Cytochrome b(C-terminal)/b6/petD DUF3995 PF13160.1 gi|529079033|ref|YP_008378036.1| - 6.9 6.7 8.1 1.9 8.5 1.5 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3995) DUF2723 PF11028.3 gi|529079034|ref|YP_008378037.1| - 0.014 14.8 0.6 0.018 14.5 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2723) IncA PF04156.9 gi|529079034|ref|YP_008378037.1| - 0.1 12.1 3.4 0.13 11.8 2.3 1.1 1 0 0 1 1 1 0 IncA protein DUF350 PF03994.9 gi|529079034|ref|YP_008378037.1| - 0.18 11.5 3.8 1.5 8.6 0.3 2.2 2 0 0 2 2 2 0 Domain of Unknown Function (DUF350) DUF308 PF03729.8 gi|529079034|ref|YP_008378037.1| - 0.92 9.5 6.8 1.8 8.6 4.6 1.5 1 1 0 1 1 1 0 Short repeat of unknown function (DUF308) Tad PF13400.1 gi|529079034|ref|YP_008378037.1| - 8.5 6.5 8.8 8.6 6.4 1.9 2.4 2 0 0 2 2 2 0 Putative Flp pilus-assembly TadE/G-like FixP_N PF14715.1 gi|529079035|ref|YP_008378038.1| - 0.28 10.5 0.2 0.28 10.5 0.2 1.7 2 0 0 2 2 2 0 N-terminal domain of cytochrome oxidase-cbb3, FixP MgtC PF02308.11 gi|529079035|ref|YP_008378038.1| - 0.65 9.8 2.6 2 8.2 0.3 2.0 2 0 0 2 2 2 0 MgtC family PAP2 PF01569.16 gi|529079036|ref|YP_008378039.1| - 0.033 13.8 1.3 0.17 11.6 0.0 2.2 2 0 0 2 2 2 0 PAP2 superfamily DUF1774 PF08611.5 gi|529079036|ref|YP_008378039.1| - 0.14 12.3 1.8 2.7 8.2 0.0 2.3 2 0 0 2 2 2 0 Fungal protein of unknown function (DUF1774) Yip1 PF04893.12 gi|529079036|ref|YP_008378039.1| - 0.17 11.4 5.0 0.42 10.0 3.5 1.7 1 1 0 1 1 1 0 Yip1 domain NAD_kinase PF01513.16 gi|529079037|ref|YP_008378040.1| - 4.7e-10 38.7 0.2 5.5e-10 38.4 0.2 1.1 1 0 0 1 1 1 1 ATP-NAD kinase Copper-bind PF00127.15 gi|529079038|ref|YP_008378041.1| - 6.9e-15 55.0 0.1 2.6e-14 53.2 0.1 1.8 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.4 gi|529079038|ref|YP_008378041.1| - 0.018 15.0 11.8 0.018 15.0 8.2 2.8 3 0 0 3 3 3 0 TAT (twin-arginine translocation) pathway signal sequence DUF1628 PF07790.6 gi|529079039|ref|YP_008378042.1| - 7.6e-25 87.4 2.3 1.4e-24 86.6 1.6 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) AJAP1_PANP_C PF15298.1 gi|529079039|ref|YP_008378042.1| - 0.036 13.9 0.8 0.036 13.9 0.6 1.5 1 1 1 2 2 2 0 AJAP1/PANP C-terminus PALP PF00291.20 gi|529079040|ref|YP_008378043.1| - 1.8e-41 142.3 0.5 2.3e-41 142.0 0.3 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DFP PF04127.10 gi|529079041|ref|YP_008378044.1| - 3e-46 157.3 2.3 7.7e-45 152.7 0.2 2.2 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.14 gi|529079041|ref|YP_008378044.1| - 2.2e-25 88.7 0.1 5.4e-25 87.5 0.1 1.7 1 0 0 1 1 1 1 Flavoprotein Glyco_hydro_3_C PF01915.17 gi|529079041|ref|YP_008378044.1| - 0.048 13.1 0.5 0.98 8.8 0.3 2.2 1 1 0 1 1 1 0 Glycosyl hydrolase family 3 C-terminal domain Peripla_BP_4 PF13407.1 gi|529079041|ref|YP_008378044.1| - 0.062 12.6 2.7 5.8 6.1 0.0 3.2 2 1 1 3 3 3 0 Periplasmic binding protein domain Glyco_trans_4_4 PF13579.1 gi|529079041|ref|YP_008378044.1| - 0.1 12.7 7.2 0.14 12.2 1.2 3.2 2 2 0 2 2 2 0 Glycosyl transferase 4-like domain NAD_binding_10 PF13460.1 gi|529079041|ref|YP_008378044.1| - 1 9.3 7.5 0.77 9.7 0.9 2.9 2 1 0 2 2 2 0 NADH(P)-binding PhaG_MnhG_YufB PF03334.9 gi|529079042|ref|YP_008378045.1| - 4.2e-25 87.5 7.6 5.3e-25 87.2 5.3 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit Caa3_CtaG PF09678.5 gi|529079042|ref|YP_008378045.1| - 0.019 13.8 0.6 0.024 13.5 0.4 1.3 1 0 0 1 1 1 0 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) DUF456 PF04306.8 gi|529079042|ref|YP_008378045.1| - 0.29 11.1 7.9 0.41 10.6 5.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF456) BCD PF15461.1 gi|529079042|ref|YP_008378045.1| - 0.29 10.5 4.2 0.5 9.7 2.9 1.4 1 1 0 1 1 1 0 Beta-carotene 15,15'-dioxygenase YtpI PF14007.1 gi|529079042|ref|YP_008378045.1| - 7.3 6.5 8.8 12 5.8 1.9 2.1 1 1 1 2 2 2 0 YtpI-like protein MrpF_PhaF PF04066.8 gi|529079043|ref|YP_008378046.1| - 2.5e-16 59.6 7.7 2.5e-16 59.6 5.3 2.1 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) PhaG_MnhG_YufB PF03334.9 gi|529079043|ref|YP_008378046.1| - 0.26 11.3 9.2 0.38 10.8 6.4 1.2 1 0 0 1 1 1 0 Na+/H+ antiporter subunit TctB PF07331.6 gi|529079043|ref|YP_008378046.1| - 0.34 10.5 7.1 0.45 10.1 5.0 1.1 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family DUF3995 PF13160.1 gi|529079043|ref|YP_008378046.1| - 2.1 8.4 6.9 4.7 7.2 4.7 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3995) MNHE PF01899.11 gi|529079044|ref|YP_008378047.1| - 3.2e-39 134.0 0.7 3.7e-39 133.8 0.5 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit Oxidored_q1 PF00361.15 gi|529079045|ref|YP_008378048.1| - 3.6e-47 160.8 13.6 3.6e-47 160.8 9.5 3.2 2 2 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|529079045|ref|YP_008378048.1| - 0.002 17.6 0.1 0.008 15.7 0.0 2.0 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NADHdeh_related PF10125.4 gi|529079045|ref|YP_008378048.1| - 0.0036 16.4 7.4 0.0036 16.4 5.2 2.8 2 1 0 2 2 2 1 NADH dehydrogenase I, subunit N related protein Oxidored_q2 PF00420.19 gi|529079046|ref|YP_008378049.1| - 3.1e-25 87.6 1.5 3.8e-25 87.3 1.0 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Gram_pos_anchor PF00746.16 gi|529079046|ref|YP_008378049.1| - 0.088 12.6 0.1 0.088 12.6 0.1 2.4 2 1 0 2 2 2 0 Gram positive anchor TrbC PF04956.8 gi|529079046|ref|YP_008378049.1| - 0.86 9.6 5.1 0.21 11.5 0.4 1.9 2 0 0 2 2 2 0 TrbC/VIRB2 family MnhB PF04039.8 gi|529079047|ref|YP_008378050.1| - 1.9e-22 79.6 15.4 1.8e-15 57.1 2.9 2.1 2 0 0 2 2 2 2 Domain related to MnhB subunit of Na+/H+ antiporter Oxidored_q1 PF00361.15 gi|529079048|ref|YP_008378051.1| - 2.7e-64 217.0 3.3 2.7e-64 217.0 2.3 2.8 2 0 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains DUF4040 PF13244.1 gi|529079048|ref|YP_008378051.1| - 1.5e-16 60.0 9.4 1.5e-16 60.0 6.5 5.0 4 0 0 4 4 4 1 Domain of unknown function (DUF4040) Oxidored_q1_N PF00662.15 gi|529079048|ref|YP_008378051.1| - 2.5e-09 36.5 2.9 5.6e-09 35.4 0.0 2.7 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Pribosyltran PF00156.22 gi|529079049|ref|YP_008378052.1| - 8.2e-17 61.1 1.3 8.2e-17 61.1 0.9 1.8 2 0 0 2 2 2 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|529079049|ref|YP_008378052.1| - 0.0041 16.3 0.3 0.0046 16.1 0.2 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Acetyltransf_1 PF00583.19 gi|529079050|ref|YP_008378053.1| - 1e-17 63.8 0.0 1.4e-17 63.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|529079050|ref|YP_008378053.1| - 1.9e-08 34.3 0.0 2.6e-08 33.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|529079050|ref|YP_008378053.1| - 7.3e-08 32.5 0.0 8.6e-08 32.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|529079050|ref|YP_008378053.1| - 1.8e-05 24.3 0.0 2.2e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|529079050|ref|YP_008378053.1| - 0.00022 21.2 0.0 0.0003 20.7 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|529079050|ref|YP_008378053.1| - 0.00075 19.3 0.1 0.00094 19.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|529079050|ref|YP_008378053.1| - 0.083 12.7 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase FUN14 PF04930.10 gi|529079051|ref|YP_008378054.1| - 4.1e-18 65.4 5.0 5.4e-18 65.1 3.5 1.1 1 0 0 1 1 1 1 FUN14 family TFIIB PF00382.14 gi|529079052|ref|YP_008378055.1| - 2.2e-42 142.7 0.3 2.6e-20 71.9 0.1 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|529079052|ref|YP_008378055.1| - 1.3e-18 66.0 5.0 4.7e-18 64.2 3.9 1.7 2 0 0 2 2 2 1 TFIIB zinc-binding HTH_24 PF13412.1 gi|529079052|ref|YP_008378055.1| - 0.00013 21.2 0.2 0.0003 20.0 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding A2L_zn_ribbon PF08792.5 gi|529079052|ref|YP_008378055.1| - 0.0015 17.9 0.8 0.0027 17.1 0.5 1.4 1 0 0 1 1 1 1 A2L zinc ribbon domain RRN7 PF11781.3 gi|529079052|ref|YP_008378055.1| - 0.0037 16.7 1.8 0.0066 15.9 1.2 1.3 1 0 0 1 1 1 1 RNA polymerase I-specific transcription initiation factor Rrn7 Cyclin_C PF02984.14 gi|529079052|ref|YP_008378055.1| - 0.0076 16.1 0.0 0.091 12.7 0.0 2.2 2 0 0 2 2 2 1 Cyclin, C-terminal domain DZR PF12773.2 gi|529079052|ref|YP_008378055.1| - 0.009 15.8 0.4 0.016 14.9 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon Sigma70_r4 PF04545.11 gi|529079052|ref|YP_008378055.1| - 0.021 14.1 2.8 0.12 11.6 0.1 3.3 3 0 0 3 3 3 0 Sigma-70, region 4 HTH_AsnC-type PF13404.1 gi|529079052|ref|YP_008378055.1| - 0.024 14.1 2.4 0.026 14.0 0.0 2.4 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain zf-C4_Topoisom PF01396.14 gi|529079052|ref|YP_008378055.1| - 0.06 12.8 1.0 0.076 12.5 0.2 1.6 1 1 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger zf-ribbon_3 PF13248.1 gi|529079052|ref|YP_008378055.1| - 0.1 11.8 3.5 0.23 10.7 2.4 1.6 1 1 1 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|529079052|ref|YP_008378055.1| - 0.1 12.2 1.1 0.23 11.1 0.8 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain HTH_Mga PF08280.6 gi|529079052|ref|YP_008378055.1| - 0.14 11.8 0.0 0.31 10.8 0.0 1.5 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain Zn-ribbon_8 PF09723.5 gi|529079052|ref|YP_008378055.1| - 0.19 11.6 4.6 0.7 9.8 0.4 2.4 1 1 1 2 2 2 0 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|529079052|ref|YP_008378055.1| - 2.1 7.9 4.0 16 5.1 2.8 2.1 1 1 1 2 2 2 0 zinc-ribbon domain zf-IS66 PF13005.2 gi|529079052|ref|YP_008378055.1| - 2.2 8.3 8.0 1.4 8.9 1.5 3.2 2 1 1 3 3 3 0 zinc-finger binding domain of transposase IS66 zf-RING_3 PF14369.1 gi|529079052|ref|YP_008378055.1| - 2.5 8.1 4.7 1.1 9.3 0.6 2.1 1 1 1 2 2 2 0 zinc-finger DUF357 PF04010.8 gi|529079053|ref|YP_008378056.1| - 1e-29 102.0 0.1 1.2e-29 101.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF357) TPR_16 PF13432.1 gi|529079053|ref|YP_008378056.1| - 0.24 12.1 4.5 0.15 12.7 0.8 2.1 1 1 1 2 2 2 0 Tetratricopeptide repeat AMMECR1 PF01871.12 gi|529079054|ref|YP_008378057.1| - 1e-53 180.9 0.0 1.2e-53 180.7 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 MutS_V PF00488.16 gi|529079055|ref|YP_008378058.1| - 1.4e-10 40.9 0.0 2.4e-10 40.2 0.0 1.3 1 0 0 1 1 1 1 MutS domain V AAA_10 PF12846.2 gi|529079055|ref|YP_008378058.1| - 0.00065 19.2 0.0 0.075 12.4 0.0 3.0 2 2 1 3 3 3 1 AAA-like domain AAA_28 PF13521.1 gi|529079055|ref|YP_008378058.1| - 0.00073 19.5 0.4 0.0022 17.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_21 PF13304.1 gi|529079055|ref|YP_008378058.1| - 0.014 15.3 0.0 0.026 14.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|529079055|ref|YP_008378058.1| - 0.014 15.2 0.0 0.026 14.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain FeoA PF04023.9 gi|529079055|ref|YP_008378058.1| - 0.044 13.7 0.5 0.29 11.1 0.0 2.6 2 0 0 2 2 2 0 FeoA domain IMS_HHH PF11798.3 gi|529079055|ref|YP_008378058.1| - 0.09 12.8 0.0 0.24 11.5 0.0 1.8 1 0 0 1 1 1 0 IMS family HHH motif AAA_22 PF13401.1 gi|529079055|ref|YP_008378058.1| - 0.26 11.4 1.2 2.8 8.0 0.0 3.0 3 1 0 3 3 3 0 AAA domain DZR PF12773.2 gi|529079056|ref|YP_008378059.1| - 0.011 15.4 1.4 0.018 14.8 1.0 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|529079056|ref|YP_008378059.1| - 0.012 14.7 2.7 0.02 14.0 1.9 1.3 1 0 0 1 1 1 0 zinc-ribbon domain PIRT PF15099.1 gi|529079056|ref|YP_008378059.1| - 0.4 9.8 0.0 0.4 9.8 0.0 1.9 2 0 0 2 2 2 0 Phosphoinositide-interacting protein family DEAD_assoc PF08494.6 gi|529079057|ref|YP_008378060.1| - 3e-39 134.6 0.0 6e-39 133.7 0.0 1.5 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|529079057|ref|YP_008378060.1| - 5.5e-31 107.3 0.0 3.9e-30 104.5 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|529079057|ref|YP_008378060.1| - 3.2e-17 62.1 0.1 9.3e-17 60.6 0.0 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|529079057|ref|YP_008378060.1| - 1.5e-07 31.3 0.0 2.8e-07 30.5 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|529079057|ref|YP_008378060.1| - 0.023 13.5 0.0 0.037 12.8 0.0 1.3 1 0 0 1 1 1 0 SNF2 family N-terminal domain AAA_19 PF13245.1 gi|529079057|ref|YP_008378060.1| - 0.028 14.1 0.4 0.4 10.4 0.0 3.3 4 0 0 4 4 4 0 Part of AAA domain Zn-ribbon_8 PF09723.5 gi|529079057|ref|YP_008378060.1| - 0.13 12.2 2.2 0.3 11.0 1.5 1.5 1 0 0 1 1 1 0 Zinc ribbon domain Creatininase PF02633.9 gi|529079058|ref|YP_008378061.1| - 6.4e-68 228.3 1.2 7.3e-68 228.1 0.8 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase DUF2288 PF10052.4 gi|529079058|ref|YP_008378061.1| - 0.08 12.6 0.0 27 4.5 0.0 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF2288) Metallophos_2 PF12850.2 gi|529079059|ref|YP_008378062.1| - 8.2e-06 25.7 0.4 1.6e-05 24.7 0.3 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|529079059|ref|YP_008378062.1| - 0.0013 18.1 0.4 0.0021 17.4 0.0 1.5 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase SOG2 PF10428.4 gi|529079060|ref|YP_008378063.1| - 5 5.6 11.3 0.2 10.2 3.6 1.7 2 0 0 2 2 2 0 RAM signalling pathway protein tRNA_anti-codon PF01336.20 gi|529079061|ref|YP_008378064.1| - 7.7e-08 32.0 1.7 0.053 13.3 0.1 4.2 4 1 0 4 4 4 3 OB-fold nucleic acid binding domain Se-cys_synth_N PF12390.3 gi|529079061|ref|YP_008378064.1| - 0.45 10.6 2.4 5.1 7.2 0.2 2.7 2 0 0 2 2 2 0 Selenocysteine synthase N terminal RibD_C PF01872.12 gi|529079062|ref|YP_008378065.1| - 7.3e-54 182.4 0.0 8.1e-54 182.2 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain DUF2496 PF10689.4 gi|529079063|ref|YP_008378066.1| - 0.095 12.3 0.6 0.21 11.2 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2496) Rod_cone_degen PF15201.1 gi|529079064|ref|YP_008378067.1| - 3 7.7 4.8 6.7 6.6 3.3 1.7 1 1 0 1 1 1 0 Progressive rod-cone degeneration Fer4 PF00037.22 gi|529079065|ref|YP_008378068.1| - 1.4e-11 43.4 13.6 7.7e-08 31.6 3.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|529079065|ref|YP_008378068.1| - 1.4e-10 41.2 4.8 1.8e-10 40.8 3.4 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|529079065|ref|YP_008378068.1| - 7.5e-09 35.8 5.4 5.6e-05 23.4 1.4 2.2 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|529079065|ref|YP_008378068.1| - 1e-08 34.6 13.9 1.2e-06 28.1 3.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|529079065|ref|YP_008378068.1| - 6.9e-08 32.1 17.0 3e-05 23.7 4.9 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|529079065|ref|YP_008378068.1| - 5.4e-07 29.5 4.8 1.3e-05 25.1 4.1 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|529079065|ref|YP_008378068.1| - 7.5e-07 28.9 7.1 1.6e-06 27.8 4.9 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|529079065|ref|YP_008378068.1| - 2.1e-06 28.0 2.2 5.6e-05 23.4 0.4 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|529079065|ref|YP_008378068.1| - 2.2e-06 27.2 11.3 0.00052 19.7 2.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|529079065|ref|YP_008378068.1| - 5e-06 26.7 0.7 0.027 14.7 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|529079065|ref|YP_008378068.1| - 9.2e-06 26.3 5.9 0.00013 22.6 1.1 2.3 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|529079065|ref|YP_008378068.1| - 2e-05 24.5 8.7 0.00019 21.4 2.3 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_3 PF12798.2 gi|529079065|ref|YP_008378068.1| - 0.0019 18.6 12.7 0.0025 18.2 3.6 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_13 PF13370.1 gi|529079065|ref|YP_008378068.1| - 0.019 15.3 13.3 0.41 11.0 9.2 2.5 1 1 0 1 1 1 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|529079065|ref|YP_008378068.1| - 0.35 11.4 15.1 8 7.1 10.5 2.7 1 1 0 1 1 1 0 4Fe-4S single cluster domain Glycos_transf_2 PF00535.21 gi|529079066|ref|YP_008378069.1| - 1.7e-28 99.4 0.0 3.2e-28 98.5 0.0 1.4 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|529079066|ref|YP_008378069.1| - 1e-18 67.9 0.6 1.5e-18 67.4 0.4 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|529079066|ref|YP_008378069.1| - 5.6e-09 35.4 0.0 1.5e-06 27.5 0.0 2.1 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|529079066|ref|YP_008378069.1| - 1.7e-06 27.9 0.1 2.2e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|529079066|ref|YP_008378069.1| - 0.0041 16.4 0.0 0.011 15.0 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferase family 21 NTP_transf_3 PF12804.2 gi|529079066|ref|YP_008378069.1| - 0.0098 15.9 0.0 0.013 15.5 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Glyco_tranf_2_5 PF13712.1 gi|529079066|ref|YP_008378069.1| - 0.079 12.1 0.0 0.19 10.9 0.0 1.6 2 0 0 2 2 2 0 Glycosyltransferase like family Glycos_transf_1 PF00534.15 gi|529079067|ref|YP_008378070.1| - 3.3e-22 78.7 0.0 5e-22 78.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|529079067|ref|YP_008378070.1| - 3.4e-07 30.4 0.0 5.8e-07 29.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 DDE_Tnp_1 PF01609.16 gi|529079068|ref|YP_008378071.1| - 3.9e-07 29.8 0.1 5.2e-07 29.4 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain Glycos_transf_1 PF00534.15 gi|529079069|ref|YP_008378072.1| - 8.9e-39 132.6 0.0 1.6e-38 131.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|529079069|ref|YP_008378072.1| - 9.6e-14 51.6 0.0 1.7e-13 50.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|529079069|ref|YP_008378072.1| - 9.9e-10 38.5 0.0 2.8e-09 37.1 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|529079069|ref|YP_008378072.1| - 9.6e-08 31.9 0.0 0.00035 20.3 0.0 2.3 2 0 0 2 2 2 2 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|529079069|ref|YP_008378072.1| - 3.6e-06 27.1 0.0 6.6e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.1 gi|529079069|ref|YP_008378072.1| - 4.5e-06 26.5 0.0 0.043 13.6 0.0 2.8 3 0 0 3 3 3 2 Glycosyl transferase 4-like Epimerase_2 PF02350.14 gi|529079069|ref|YP_008378072.1| - 0.0036 16.1 0.1 0.0076 15.0 0.1 1.5 1 1 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glycos_transf_1 PF00534.15 gi|529079070|ref|YP_008378073.1| - 6.4e-36 123.3 0.0 9.8e-36 122.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|529079070|ref|YP_008378073.1| - 1.8e-17 63.7 0.1 4.7e-17 62.4 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|529079070|ref|YP_008378073.1| - 1.4e-12 48.0 0.0 3.9e-12 46.5 0.0 1.7 2 1 1 3 3 3 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|529079070|ref|YP_008378073.1| - 7.1e-09 35.6 0.0 1.2e-08 34.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|529079070|ref|YP_008378073.1| - 8.9e-05 22.6 0.0 0.00017 21.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|529079070|ref|YP_008378073.1| - 0.036 13.9 0.0 0.059 13.2 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase 4-like Glycos_transf_1 PF00534.15 gi|529079071|ref|YP_008378074.1| - 2e-34 118.4 0.0 3e-34 117.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|529079071|ref|YP_008378074.1| - 1.3e-19 70.7 0.0 3.4e-19 69.3 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|529079071|ref|YP_008378074.1| - 1.8e-14 53.7 0.0 4.1e-14 52.5 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|529079071|ref|YP_008378074.1| - 3.1e-05 24.1 0.0 9.2e-05 22.6 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|529079071|ref|YP_008378074.1| - 0.047 13.4 0.0 0.11 12.2 0.0 1.7 1 1 0 1 1 1 0 Glycosyltransferase Family 4 Polysacc_synt PF01943.12 gi|529079072|ref|YP_008378075.1| - 2.1e-26 92.8 24.3 2.1e-26 92.8 16.8 2.3 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|529079072|ref|YP_008378075.1| - 4.6e-22 78.6 26.0 4.6e-22 78.6 18.0 2.7 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|529079072|ref|YP_008378075.1| - 1.5e-16 60.5 20.5 1.5e-16 60.5 14.2 3.5 3 0 0 3 3 3 2 Polysaccharide biosynthesis C-terminal domain MVIN PF03023.9 gi|529079072|ref|YP_008378075.1| - 0.028 12.8 33.7 0.36 9.2 22.8 2.8 1 1 0 1 1 1 0 MviN-like protein DUF1772 PF08592.6 gi|529079072|ref|YP_008378075.1| - 0.13 11.9 0.1 0.13 11.9 0.0 4.3 3 2 2 5 5 5 0 Domain of unknown function (DUF1772) Glycos_transf_2 PF00535.21 gi|529079073|ref|YP_008378076.1| - 3.3e-23 82.2 0.1 9.4e-23 80.7 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|529079073|ref|YP_008378076.1| - 2.1e-14 53.8 0.0 2.9e-14 53.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 NTP_transf_3 PF12804.2 gi|529079073|ref|YP_008378076.1| - 0.00018 21.6 0.0 0.00028 21.0 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Glyco_tranf_2_4 PF13704.1 gi|529079073|ref|YP_008378076.1| - 0.024 14.9 0.0 0.052 13.8 0.0 1.5 1 1 0 1 1 1 0 Glycosyl transferase family 2 DUF2910 PF11139.3 gi|529079073|ref|YP_008378076.1| - 0.042 12.9 0.2 0.058 12.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2910) MR_MLE PF01188.16 gi|529079073|ref|YP_008378076.1| - 0.064 13.7 0.0 0.14 12.7 0.0 1.4 1 0 0 1 1 1 0 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain PFK PF00365.15 gi|529079073|ref|YP_008378076.1| - 0.084 11.8 1.1 0.28 10.0 0.3 2.1 3 0 0 3 3 3 0 Phosphofructokinase RhaT PF06379.7 gi|529079073|ref|YP_008378076.1| - 0.25 10.2 3.0 0.36 9.7 2.1 1.1 1 0 0 1 1 1 0 L-rhamnose-proton symport protein (RhaT) Rhomboid PF01694.17 gi|529079075|ref|YP_008378078.1| - 6.3e-08 32.7 20.3 6.3e-08 32.7 14.1 3.1 2 1 0 2 2 2 1 Rhomboid family Peptidase_M50 PF02163.17 gi|529079075|ref|YP_008378078.1| - 0.0053 15.7 4.7 0.011 14.7 3.2 1.5 1 0 0 1 1 1 1 Peptidase family M50 Methyltransf_26 PF13659.1 gi|529079076|ref|YP_008378079.1| - 2.6e-14 53.2 0.3 3.6e-14 52.7 0.2 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|529079076|ref|YP_008378079.1| - 3.3e-12 46.1 0.0 4.7e-12 45.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain UPF0020 PF01170.13 gi|529079076|ref|YP_008378079.1| - 6.6e-11 42.1 0.0 9e-11 41.6 0.0 1.1 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_18 PF12847.2 gi|529079076|ref|YP_008378079.1| - 6.7e-10 39.5 0.0 1.5e-09 38.4 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|529079076|ref|YP_008378079.1| - 3.2e-09 36.3 0.0 4.1e-09 35.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.1 gi|529079076|ref|YP_008378079.1| - 1e-08 34.9 0.0 1.5e-08 34.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|529079076|ref|YP_008378079.1| - 1.3e-07 32.0 0.0 2.7e-07 30.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|529079076|ref|YP_008378079.1| - 9.3e-07 28.4 0.0 1.3e-06 27.9 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_25 PF13649.1 gi|529079076|ref|YP_008378079.1| - 1.5e-05 25.3 0.0 2.3e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|529079076|ref|YP_008378079.1| - 5.6e-05 22.3 0.0 0.00013 21.2 0.0 1.5 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_32 PF13679.1 gi|529079076|ref|YP_008378079.1| - 5.7e-05 22.8 0.0 6.8e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|529079076|ref|YP_008378079.1| - 0.00039 20.8 0.0 0.00071 20.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|529079076|ref|YP_008378079.1| - 0.00048 19.8 0.0 0.00055 19.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|529079076|ref|YP_008378079.1| - 0.0041 16.2 0.0 0.0049 15.9 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_9 PF08003.6 gi|529079076|ref|YP_008378079.1| - 0.0047 15.6 0.0 0.0064 15.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) N6_Mtase PF02384.11 gi|529079076|ref|YP_008378079.1| - 0.0067 15.5 0.0 0.011 14.8 0.0 1.3 1 1 0 1 1 1 1 N-6 DNA Methylase FmrO PF07091.6 gi|529079076|ref|YP_008378079.1| - 0.012 14.5 0.0 0.02 13.9 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) FtsJ PF01728.14 gi|529079076|ref|YP_008378079.1| - 0.013 15.4 0.0 0.017 15.1 0.0 1.2 1 0 0 1 1 1 0 FtsJ-like methyltransferase PCMT PF01135.14 gi|529079076|ref|YP_008378079.1| - 0.035 13.6 0.0 0.049 13.1 0.0 1.1 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_3 PF01596.12 gi|529079076|ref|YP_008378079.1| - 0.036 13.1 0.0 0.05 12.6 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_15 PF09445.5 gi|529079076|ref|YP_008378079.1| - 0.051 13.1 0.0 0.064 12.8 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase DUF43 PF01861.11 gi|529079076|ref|YP_008378079.1| - 0.054 12.4 0.0 0.078 11.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF43 AdoMet_MTase PF07757.8 gi|529079076|ref|YP_008378079.1| - 0.097 12.8 0.0 0.15 12.1 0.0 1.3 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase Met_10 PF02475.11 gi|529079076|ref|YP_008378079.1| - 0.12 11.9 0.0 0.15 11.6 0.0 1.1 1 0 0 1 1 1 0 Met-10+ like-protein GAF_3 PF13492.1 gi|529079077|ref|YP_008378080.1| - 0.00019 21.5 0.1 0.00034 20.7 0.1 1.5 1 0 0 1 1 1 1 GAF domain GAF_2 PF13185.1 gi|529079077|ref|YP_008378080.1| - 0.0018 18.7 3.6 0.0064 16.9 0.3 2.9 2 2 1 3 3 3 1 GAF domain Romo1 PF10247.4 gi|529079077|ref|YP_008378080.1| - 0.039 14.1 0.1 0.22 11.7 0.0 2.2 2 0 0 2 2 2 0 Reactive mitochondrial oxygen species modulator 1 RDD PF06271.7 gi|529079077|ref|YP_008378080.1| - 0.12 12.2 3.0 12 5.8 0.0 2.5 2 1 0 2 2 2 0 RDD family DUF4341 PF14241.1 gi|529079077|ref|YP_008378080.1| - 4.7 6.9 7.9 0.18 11.5 0.4 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4341) RNase_P_p30 PF01876.11 gi|529079078|ref|YP_008378081.1| - 1.8e-31 108.3 0.0 2.2e-31 108.1 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit p30 PHP PF02811.14 gi|529079078|ref|YP_008378081.1| - 0.0065 16.2 0.0 0.0081 15.9 0.0 1.3 1 1 0 1 1 1 1 PHP domain RNA_binding PF01877.12 gi|529079079|ref|YP_008378082.1| - 2e-28 98.7 0.1 3e-28 98.2 0.0 1.2 1 0 0 1 1 1 1 RNA binding DUF2520 PF10728.4 gi|529079079|ref|YP_008378082.1| - 0.087 12.2 0.1 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF2520) DUF1918 PF08940.6 gi|529079080|ref|YP_008378083.1| - 0.016 14.5 0.1 0.022 14.0 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1918) NUDIX PF00293.23 gi|529079081|ref|YP_008378084.1| - 4.1e-16 58.8 0.4 7.1e-16 58.0 0.3 1.3 1 0 0 1 1 1 1 NUDIX domain DUF2543 PF10820.3 gi|529079081|ref|YP_008378084.1| - 0.098 12.6 0.7 3.1 7.8 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2543) PyrI PF01948.13 gi|529079082|ref|YP_008378085.1| - 2.4e-36 123.6 0.3 3e-36 123.3 0.2 1.1 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.10 gi|529079082|ref|YP_008378085.1| - 3.6e-17 61.5 0.3 6.1e-17 60.8 0.2 1.4 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain OTCace_N PF02729.16 gi|529079083|ref|YP_008378086.1| - 1.2e-41 141.7 0.0 4.3e-40 136.6 0.0 2.1 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|529079083|ref|YP_008378086.1| - 7.5e-37 126.6 0.0 1.3e-36 125.8 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DUF2664 PF10867.3 gi|529079083|ref|YP_008378086.1| - 5.7 7.6 5.6 2.1 9.0 0.3 2.9 4 0 0 4 4 4 0 Protein of unknown function (DUF2664) KaiC PF06745.8 gi|529079084|ref|YP_008378087.1| - 2.8e-08 33.1 0.0 0.00051 19.2 0.0 2.1 1 1 0 2 2 2 2 KaiC Trigger_N PF05697.8 gi|529079084|ref|YP_008378087.1| - 0.11 12.3 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial trigger factor protein (TF) NUDIX PF00293.23 gi|529079085|ref|YP_008378088.1| - 1.5e-13 50.5 0.7 2.1e-13 50.0 0.5 1.1 1 0 0 1 1 1 1 NUDIX domain FKBP_C PF00254.23 gi|529079086|ref|YP_008378089.1| - 5.1e-09 36.0 0.3 1.6e-08 34.4 0.2 1.9 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase Imm1 PF14430.1 gi|529079086|ref|YP_008378089.1| - 0.24 11.5 6.2 6.2 6.9 1.7 2.5 2 0 0 2 2 2 0 Immunity protein Imm1 CYTH PF01928.16 gi|529079087|ref|YP_008378090.1| - 1e-44 152.4 3.5 1.1e-44 152.3 2.4 1.0 1 0 0 1 1 1 1 CYTH domain TOBE_2 PF08402.5 gi|529079087|ref|YP_008378090.1| - 0.11 12.5 0.3 0.91 9.5 0.1 2.3 1 1 1 2 2 2 0 TOBE domain AdoMet_Synthase PF01941.14 gi|529079088|ref|YP_008378091.1| - 4.9e-178 591.6 6.9 5.6e-178 591.4 4.8 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) Asp23 PF03780.8 gi|529079088|ref|YP_008378091.1| - 1 9.6 6.0 1.9 8.7 0.5 3.2 2 1 0 2 2 2 0 Asp23 family ThiI PF02568.9 gi|529079089|ref|YP_008378092.1| - 4.9e-43 146.8 0.0 6.5e-43 146.4 0.0 1.1 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.12 gi|529079089|ref|YP_008378092.1| - 3.7e-13 49.5 0.0 5.6e-13 48.9 0.0 1.3 1 0 0 1 1 1 1 THUMP domain QueC PF06508.8 gi|529079089|ref|YP_008378092.1| - 1.7e-05 24.1 0.0 0.052 12.8 0.0 2.4 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.15 gi|529079089|ref|YP_008378092.1| - 0.0074 15.7 0.0 0.015 14.8 0.0 1.4 1 0 0 1 1 1 1 PP-loop family Asn_synthase PF00733.16 gi|529079089|ref|YP_008378092.1| - 0.026 14.0 0.0 0.041 13.3 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase tRNA_Me_trans PF03054.11 gi|529079089|ref|YP_008378092.1| - 0.088 11.3 0.0 0.12 10.8 0.0 1.2 1 0 0 1 1 1 0 tRNA methyl transferase Response_reg PF00072.19 gi|529079091|ref|YP_008378094.1| - 5.8e-18 64.9 0.0 7e-18 64.6 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain PALP PF00291.20 gi|529079092|ref|YP_008378095.1| - 1.1e-57 195.6 0.1 1.3e-57 195.3 0.1 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PDZ PF00595.19 gi|529079092|ref|YP_008378095.1| - 0.042 14.0 0.5 1.4 9.1 0.0 2.5 1 1 1 2 2 2 0 PDZ domain (Also known as DHR or GLGF) Thioredoxin PF00085.15 gi|529079093|ref|YP_008378096.1| - 1.1e-10 41.0 0.0 1.4e-10 40.7 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_9 PF14595.1 gi|529079093|ref|YP_008378096.1| - 0.00051 19.6 0.0 0.00072 19.1 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin AhpC-TSA PF00578.16 gi|529079093|ref|YP_008378096.1| - 0.0025 17.4 0.0 0.031 13.9 0.0 2.0 1 1 1 2 2 2 1 AhpC/TSA family Thioredoxin_8 PF13905.1 gi|529079093|ref|YP_008378096.1| - 0.0038 17.2 0.0 0.79 9.8 0.0 2.3 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_7 PF13899.1 gi|529079093|ref|YP_008378096.1| - 0.0052 16.7 0.0 0.0075 16.2 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like Redoxin PF08534.5 gi|529079093|ref|YP_008378096.1| - 0.0085 15.6 0.1 2.8 7.4 0.0 2.1 1 1 1 2 2 2 2 Redoxin Thioredoxin_2 PF13098.1 gi|529079093|ref|YP_008378096.1| - 0.03 14.4 0.1 0.22 11.7 0.0 2.0 1 1 0 1 1 1 0 Thioredoxin-like domain RP-C PF03428.8 gi|529079093|ref|YP_008378096.1| - 0.059 12.8 0.0 0.085 12.3 0.0 1.1 1 0 0 1 1 1 0 Replication protein C N-terminal domain DUF4352 PF11611.3 gi|529079094|ref|YP_008378097.1| - 0.081 13.0 0.0 0.097 12.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4352) DUF11 PF01345.13 gi|529079094|ref|YP_008378097.1| - 0.21 11.6 1.4 0.39 10.8 1.0 1.5 1 1 0 1 1 1 0 Domain of unknown function DUF11 Thioredox_DsbH PF03190.10 gi|529079095|ref|YP_008378098.1| - 2.6e-74 248.3 0.0 3.8e-74 247.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.1 gi|529079095|ref|YP_008378098.1| - 2.8e-11 43.2 0.1 5.3e-11 42.3 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|529079095|ref|YP_008378098.1| - 0.0029 17.7 0.0 0.0056 16.8 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like domain GlcNAc_2-epim PF07221.6 gi|529079095|ref|YP_008378098.1| - 0.0058 15.6 0.0 0.15 11.0 0.0 2.3 2 0 0 2 2 2 1 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) C5-epim_C PF06662.8 gi|529079095|ref|YP_008378098.1| - 0.055 12.7 0.0 0.11 11.8 0.0 1.4 1 0 0 1 1 1 0 D-glucuronyl C5-epimerase C-terminus Glyco_hydro_88 PF07470.8 gi|529079095|ref|YP_008378098.1| - 0.13 11.3 0.0 0.37 9.7 0.0 1.8 1 0 0 1 1 1 0 Glycosyl Hydrolase Family 88 GARS_A PF01071.14 gi|529079096|ref|YP_008378099.1| - 3.6e-51 173.4 0.0 5.8e-51 172.8 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.10 gi|529079096|ref|YP_008378099.1| - 3.7e-26 91.4 0.1 7.2e-26 90.5 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain ATP-grasp_4 PF13535.1 gi|529079096|ref|YP_008378099.1| - 2.2e-20 73.1 0.0 5.1e-20 71.9 0.0 1.5 2 0 0 2 2 2 1 ATP-grasp domain GARS_C PF02843.11 gi|529079096|ref|YP_008378099.1| - 2.9e-20 72.2 0.8 1.9e-19 69.6 0.0 2.4 2 1 0 3 3 3 1 Phosphoribosylglycinamide synthetase, C domain ATPgrasp_Ter PF15632.1 gi|529079096|ref|YP_008378099.1| - 2.5e-07 29.7 0.0 7.9e-07 28.1 0.0 1.8 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|529079096|ref|YP_008378099.1| - 7.6e-07 29.1 0.0 1.7e-06 28.0 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|529079096|ref|YP_008378099.1| - 0.044 13.0 0.0 0.083 12.1 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain CP_ATPgrasp_2 PF14403.1 gi|529079096|ref|YP_008378099.1| - 0.044 12.4 0.0 0.076 11.6 0.0 1.3 1 0 0 1 1 1 0 Circularly permuted ATP-grasp type 2 DUF302 PF03625.9 gi|529079097|ref|YP_008378100.1| - 7.2e-21 73.5 0.0 1.2e-20 72.8 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF302 DUF445 PF04286.7 gi|529079098|ref|YP_008378101.1| - 0.00025 20.7 16.7 0.00052 19.6 11.6 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF445) YpjP PF14005.1 gi|529079098|ref|YP_008378101.1| - 0.0056 16.4 15.1 1.1 9.0 3.1 3.0 1 1 1 2 2 2 2 YpjP-like protein COMPASS-Shg1 PF05205.7 gi|529079098|ref|YP_008378101.1| - 0.0065 16.7 12.4 35 4.7 8.6 3.3 1 1 0 1 1 1 0 COMPASS (Complex proteins associated with Set1p) component shg1 GerPC PF10737.4 gi|529079098|ref|YP_008378101.1| - 0.013 15.2 10.5 0.04 13.6 2.1 2.2 1 1 1 2 2 2 0 Spore germination protein GerPC DUF2889 PF11136.3 gi|529079098|ref|YP_008378101.1| - 0.017 15.2 2.4 22 5.2 0.1 3.7 1 1 4 5 5 5 0 Protein of unknown function (DUF2889) TraU PF06834.6 gi|529079098|ref|YP_008378101.1| - 0.1 11.7 0.2 0.17 10.9 0.2 1.4 1 0 0 1 1 1 0 TraU protein DUF3819 PF12842.2 gi|529079098|ref|YP_008378101.1| - 0.13 11.9 12.2 7.6 6.2 0.1 3.5 1 1 1 2 2 2 0 Domain of unknown function (DUF3819) Asp-B-Hydro_N PF05279.6 gi|529079098|ref|YP_008378101.1| - 0.2 11.4 34.0 0.33 10.7 23.6 1.4 1 0 0 1 1 1 0 Aspartyl beta-hydroxylase N-terminal region DUF234 PF03008.9 gi|529079098|ref|YP_008378101.1| - 0.25 11.4 6.7 11 6.2 0.1 2.9 1 1 1 2 2 2 0 Archaea bacterial proteins of unknown function DUF4163 PF13739.1 gi|529079098|ref|YP_008378101.1| - 0.29 11.9 7.8 2e+02 2.8 5.4 2.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4163) SecA_SW PF07516.8 gi|529079098|ref|YP_008378101.1| - 0.39 10.4 13.8 17 5.0 9.5 2.2 1 1 0 1 1 1 0 SecA Wing and Scaffold domain ACP PF06857.6 gi|529079098|ref|YP_008378101.1| - 0.49 10.3 20.4 1.3 8.9 1.6 3.6 1 1 2 3 3 3 0 Malonate decarboxylase delta subunit (MdcD) EcsC PF12787.2 gi|529079098|ref|YP_008378101.1| - 0.61 9.4 6.5 3 7.1 1.5 2.4 1 1 1 2 2 2 0 EcsC protein family SAC3 PF12209.3 gi|529079098|ref|YP_008378101.1| - 0.81 9.8 18.3 4.1 7.5 0.6 4.3 1 1 1 2 2 2 0 Leucine permease transcriptional regulator helical domain SLY PF12485.3 gi|529079098|ref|YP_008378101.1| - 0.97 9.6 15.1 0.17 12.1 3.6 2.1 1 1 1 2 2 2 0 Lymphocyte signaling adaptor protein Sec3_C_2 PF15278.1 gi|529079098|ref|YP_008378101.1| - 1.2 9.3 16.9 35 4.6 1.4 3.9 1 1 1 2 2 2 0 Sec3 exocyst complex subunit HK97-gp10_like PF04883.7 gi|529079098|ref|YP_008378101.1| - 3.4 8.6 7.8 1.9e+03 -0.2 5.4 3.2 1 1 0 1 1 1 0 Bacteriophage HK97-gp10, putative tail-component WASH-7_mid PF14744.1 gi|529079098|ref|YP_008378101.1| - 6.4 5.5 9.4 6.2 5.5 0.7 2.1 1 1 1 2 2 2 0 WASH complex subunit 7 HNOB PF07700.10 gi|529079098|ref|YP_008378101.1| - 7.8 5.9 17.5 5.2 6.5 5.3 2.7 1 1 1 2 2 2 0 Heme NO binding DUF2608 PF11019.3 gi|529079098|ref|YP_008378101.1| - 8.4 5.2 11.1 6.6 5.6 0.2 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF2608) T2SE PF00437.15 gi|529079099|ref|YP_008378102.1| - 5.2e-14 51.7 0.1 9.4e-14 50.9 0.1 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein PIN PF01850.16 gi|529079099|ref|YP_008378102.1| - 6e-06 26.5 1.3 1.5e-05 25.2 0.1 2.3 2 0 0 2 2 2 1 PIN domain AAA_17 PF13207.1 gi|529079099|ref|YP_008378102.1| - 1.9e-05 25.4 1.0 8.2e-05 23.4 0.1 2.7 2 1 0 2 2 1 1 AAA domain KH_1 PF00013.24 gi|529079099|ref|YP_008378102.1| - 2.4e-05 23.8 0.3 9.3e-05 21.9 0.2 2.1 1 0 0 1 1 1 1 KH domain ArgK PF03308.11 gi|529079099|ref|YP_008378102.1| - 0.0006 18.6 0.1 0.15 10.7 0.0 2.6 2 0 0 2 2 2 1 ArgK protein AAA_19 PF13245.1 gi|529079099|ref|YP_008378102.1| - 0.00067 19.3 0.0 0.003 17.2 0.0 2.1 2 0 0 2 2 2 1 Part of AAA domain AAA_33 PF13671.1 gi|529079099|ref|YP_008378102.1| - 0.00074 19.4 0.0 0.0046 16.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|529079099|ref|YP_008378102.1| - 0.00081 19.4 0.1 0.0028 17.6 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain Thymidylate_kin PF02223.12 gi|529079099|ref|YP_008378102.1| - 0.0011 18.3 0.0 0.0033 16.8 0.0 1.7 1 1 0 1 1 1 1 Thymidylate kinase IstB_IS21 PF01695.12 gi|529079099|ref|YP_008378102.1| - 0.0014 18.0 0.0 0.0025 17.2 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_30 PF13604.1 gi|529079099|ref|YP_008378102.1| - 0.0014 18.2 0.0 0.0039 16.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|529079099|ref|YP_008378102.1| - 0.0016 17.9 0.0 0.0038 16.7 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|529079099|ref|YP_008378102.1| - 0.0022 17.4 3.0 0.023 14.1 0.1 2.7 2 1 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|529079099|ref|YP_008378102.1| - 0.0031 17.2 0.0 0.0077 15.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|529079099|ref|YP_008378102.1| - 0.0031 17.8 0.0 0.018 15.3 0.0 2.3 3 0 0 3 3 1 1 AAA domain NTPase_1 PF03266.10 gi|529079099|ref|YP_008378102.1| - 0.0038 16.9 0.0 0.011 15.4 0.0 1.9 1 0 0 1 1 1 1 NTPase Zeta_toxin PF06414.7 gi|529079099|ref|YP_008378102.1| - 0.0042 16.2 0.0 0.0097 15.0 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin KH_2 PF07650.12 gi|529079099|ref|YP_008378102.1| - 0.005 16.3 1.7 0.013 15.0 1.2 1.7 1 0 0 1 1 1 1 KH domain AAA_22 PF13401.1 gi|529079099|ref|YP_008378102.1| - 0.01 16.0 0.0 0.027 14.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|529079099|ref|YP_008378102.1| - 0.013 14.7 0.0 0.023 13.9 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_14 PF13173.1 gi|529079099|ref|YP_008378102.1| - 0.017 14.9 0.0 0.035 14.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain KaiC PF06745.8 gi|529079099|ref|YP_008378102.1| - 0.019 14.1 0.0 0.12 11.4 0.0 2.1 2 0 0 2 2 2 0 KaiC PIN_4 PF13638.1 gi|529079099|ref|YP_008378102.1| - 0.023 14.7 0.0 0.13 12.3 0.0 2.2 1 1 0 1 1 1 0 PIN domain AAA PF00004.24 gi|529079099|ref|YP_008378102.1| - 0.025 14.7 0.0 0.065 13.4 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.1 gi|529079099|ref|YP_008378102.1| - 0.032 14.2 0.0 0.13 12.1 0.0 2.1 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|529079099|ref|YP_008378102.1| - 0.054 13.0 0.0 0.084 12.4 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Sigma54_activ_2 PF14532.1 gi|529079099|ref|YP_008378102.1| - 0.098 12.7 0.0 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain Viral_helicase1 PF01443.13 gi|529079099|ref|YP_008378102.1| - 0.1 12.1 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase NACHT PF05729.7 gi|529079099|ref|YP_008378102.1| - 0.12 11.9 0.0 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 NACHT domain ABC_tran PF00005.22 gi|529079099|ref|YP_008378102.1| - 0.13 12.5 0.0 0.28 11.4 0.0 1.5 1 0 0 1 1 1 0 ABC transporter Sigma54_activat PF00158.21 gi|529079099|ref|YP_008378102.1| - 0.15 11.5 0.0 0.28 10.6 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain RNA_helicase PF00910.17 gi|529079099|ref|YP_008378102.1| - 0.16 12.1 0.0 0.39 10.9 0.0 1.7 2 0 0 2 2 1 0 RNA helicase GlcNAc_2-epim PF07221.6 gi|529079100|ref|YP_008378103.1| - 1.1e-95 320.5 6.2 1.5e-95 320.1 4.1 1.2 1 1 0 1 1 1 1 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) DUF1680 PF07944.7 gi|529079100|ref|YP_008378103.1| - 0.0004 18.7 0.3 0.0059 14.9 0.2 2.0 1 1 0 1 1 1 1 Putative glycosyl hydrolase of unknown function (DUF1680) Glyco_hydro_76 PF03663.9 gi|529079100|ref|YP_008378103.1| - 0.00052 19.5 3.3 0.032 13.6 0.2 3.0 3 0 0 3 3 3 2 Glycosyl hydrolase family 76 C5-epim_C PF06662.8 gi|529079100|ref|YP_008378103.1| - 0.12 11.6 0.4 6.4 6.0 0.0 2.3 2 0 0 2 2 2 0 D-glucuronyl C5-epimerase C-terminus Peptidase_M24 PF00557.19 gi|529079101|ref|YP_008378104.1| - 2.9e-41 141.3 2.0 3.2e-41 141.2 0.6 1.6 2 0 0 2 2 2 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|529079101|ref|YP_008378104.1| - 4.6e-06 27.1 0.0 1.3e-05 25.7 0.0 1.8 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Nitro_FeMo-Co PF02579.12 gi|529079101|ref|YP_008378104.1| - 0.058 13.4 0.6 0.15 12.1 0.2 1.9 1 1 1 2 2 2 0 Dinitrogenase iron-molybdenum cofactor TetR_C_6 PF13977.1 gi|529079102|ref|YP_008378105.1| - 7.9e-15 54.8 7.4 1.4e-14 54.0 5.1 1.4 1 0 0 1 1 1 1 Bacterial transcriptional repressor TetR_N PF00440.18 gi|529079102|ref|YP_008378105.1| - 2.5e-07 30.1 0.1 5.7e-07 29.0 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family WHG PF13305.1 gi|529079102|ref|YP_008378105.1| - 0.034 14.6 0.5 0.5 10.9 0.5 2.6 2 1 0 2 2 2 0 WHG domain TetR_C_2 PF08361.6 gi|529079102|ref|YP_008378105.1| - 0.065 13.1 0.0 0.22 11.4 0.0 1.7 1 1 1 2 2 2 0 MAATS-type transcriptional repressor, C-terminal region Clathrin PF00637.15 gi|529079102|ref|YP_008378105.1| - 0.086 12.4 0.0 0.17 11.4 0.0 1.4 1 0 0 1 1 1 0 Region in Clathrin and VPS TetR_C_5 PF08360.6 gi|529079102|ref|YP_008378105.1| - 0.088 12.7 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 QacR-like protein, C-terminal region LEA_6 PF10714.4 gi|529079103|ref|YP_008378106.1| - 2.1 8.2 6.6 1.6 8.5 3.0 1.8 2 0 0 2 2 2 0 Late embryogenesis abundant protein 18 IMPDH PF00478.20 gi|529079104|ref|YP_008378107.1| - 1.4e-129 432.0 5.2 1.6e-129 431.8 3.6 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.23 gi|529079104|ref|YP_008378107.1| - 1e-28 98.8 5.4 1.1e-14 53.9 0.3 2.8 2 0 0 2 2 2 2 CBS domain NMO PF03060.10 gi|529079104|ref|YP_008378107.1| - 4.4e-13 49.0 2.4 4.8e-06 25.9 0.5 2.3 2 0 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.13 gi|529079104|ref|YP_008378107.1| - 1.2e-08 34.2 3.6 3.2e-08 32.8 2.5 1.7 1 1 0 1 1 1 1 FMN-dependent dehydrogenase ThiG PF05690.9 gi|529079104|ref|YP_008378107.1| - 4.4e-05 22.6 0.9 4.4e-05 22.6 0.6 2.3 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG DHO_dh PF01180.16 gi|529079104|ref|YP_008378107.1| - 0.00027 19.9 0.9 0.00057 18.9 0.6 1.5 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase His_biosynth PF00977.16 gi|529079104|ref|YP_008378107.1| - 0.00059 19.1 1.0 0.0027 17.0 0.6 2.0 1 1 0 1 1 1 1 Histidine biosynthesis protein Glu_synthase PF01645.12 gi|529079104|ref|YP_008378107.1| - 0.0037 16.2 3.4 0.0037 16.2 2.4 1.7 2 0 0 2 2 2 1 Conserved region in glutamate synthase Dus PF01207.12 gi|529079104|ref|YP_008378107.1| - 0.0055 15.5 0.1 0.012 14.4 0.1 1.5 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) PcrB PF01884.12 gi|529079104|ref|YP_008378107.1| - 0.015 14.5 0.4 0.015 14.5 0.3 2.9 3 0 0 3 3 3 0 PcrB family Methyltransf_24 PF13578.1 gi|529079104|ref|YP_008378107.1| - 0.062 14.1 0.2 0.21 12.4 0.1 1.9 1 0 0 1 1 1 0 Methyltransferase domain Amino_oxidase PF01593.19 gi|529079105|ref|YP_008378108.1| - 1.3e-15 57.4 2.7 6.3e-09 35.4 0.2 2.1 1 1 0 2 2 2 2 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|529079105|ref|YP_008378108.1| - 1.8e-13 50.3 0.4 5e-13 48.8 0.3 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|529079105|ref|YP_008378108.1| - 8e-11 41.4 0.3 7.3e-06 25.1 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|529079105|ref|YP_008378108.1| - 9.3e-05 22.5 0.1 0.00027 21.0 0.1 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|529079105|ref|YP_008378108.1| - 0.0051 16.5 0.6 2 8.1 0.1 2.2 2 0 0 2 2 2 2 FAD-NAD(P)-binding ApbA PF02558.11 gi|529079105|ref|YP_008378108.1| - 0.06 12.7 0.1 0.14 11.6 0.0 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Pyr_redox_2 PF07992.9 gi|529079105|ref|YP_008378108.1| - 0.15 11.9 1.0 0.28 11.0 0.7 1.7 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|529079105|ref|YP_008378108.1| - 0.5 9.1 1.8 0.69 8.7 1.2 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A GtrA PF04138.9 gi|529079106|ref|YP_008378109.1| - 5.6e-24 84.3 3.9 1.7e-23 82.8 3.0 1.5 1 1 0 1 1 1 1 GtrA-like protein DUF4212 PF13937.1 gi|529079106|ref|YP_008378109.1| - 0.43 10.6 3.5 0.86 9.6 2.4 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4212) Glycos_transf_2 PF00535.21 gi|529079107|ref|YP_008378110.1| - 7.5e-10 38.7 0.0 1.1e-09 38.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|529079107|ref|YP_008378110.1| - 0.001 18.9 0.1 0.0014 18.5 0.1 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 DUF2298 PF10060.4 gi|529079108|ref|YP_008378111.1| - 5.5e-127 424.4 26.5 9.5e-127 423.7 18.4 1.3 1 0 0 1 1 1 1 Uncharacterized membrane protein (DUF2298) Ribosomal_L44 PF00935.14 gi|529079110|ref|YP_008378113.1| - 1.4e-18 66.6 0.7 1.5e-18 66.5 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L44 Ribosomal_S27e PF01667.12 gi|529079111|ref|YP_008378114.1| - 7.7e-21 73.3 0.4 8.1e-21 73.3 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 DUF3797 PF12677.2 gi|529079111|ref|YP_008378114.1| - 7.2e-05 22.3 1.8 0.19 11.4 0.2 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF3797) TF_Zn_Ribbon PF08271.7 gi|529079111|ref|YP_008378114.1| - 0.00035 19.8 1.6 0.0005 19.3 1.1 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|529079111|ref|YP_008378114.1| - 0.00094 19.0 0.3 0.0012 18.6 0.2 1.2 1 0 0 1 1 1 1 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|529079111|ref|YP_008378114.1| - 0.0016 17.5 1.5 0.0027 16.8 1.1 1.4 1 0 0 1 1 1 1 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|529079111|ref|YP_008378114.1| - 0.036 13.5 1.9 5.6 6.5 0.1 1.8 1 1 0 2 2 2 0 A2L zinc ribbon domain HypA PF01155.14 gi|529079111|ref|YP_008378114.1| - 0.049 13.3 0.3 0.06 13.0 0.2 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family OrfB_Zn_ribbon PF07282.6 gi|529079111|ref|YP_008378114.1| - 0.061 12.9 0.1 0.071 12.7 0.1 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain TFIIS_C PF01096.13 gi|529079111|ref|YP_008378114.1| - 0.072 12.7 0.9 1.9 8.2 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-NADH-PPase PF09297.6 gi|529079111|ref|YP_008378114.1| - 0.081 12.4 1.6 2.2 7.8 0.1 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Zn_Tnp_IS91 PF14319.1 gi|529079111|ref|YP_008378114.1| - 0.087 12.3 0.1 0.096 12.1 0.1 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain PADR1 PF08063.7 gi|529079111|ref|YP_008378114.1| - 0.11 11.8 1.1 0.27 10.6 0.2 1.8 1 1 1 2 2 2 0 PADR1 (NUC008) domain IBR PF01485.16 gi|529079111|ref|YP_008378114.1| - 0.12 12.2 0.5 0.15 11.9 0.3 1.2 1 0 0 1 1 1 0 IBR domain Zn_ribbon_recom PF13408.1 gi|529079111|ref|YP_008378114.1| - 0.14 12.4 0.8 1.7 8.9 0.1 2.2 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain DNA_ligase_ZBD PF03119.11 gi|529079111|ref|YP_008378114.1| - 0.14 11.8 3.0 0.93 9.2 0.1 2.4 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DZR PF12773.2 gi|529079111|ref|YP_008378114.1| - 0.14 12.0 1.0 0.25 11.2 0.7 1.4 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_4 PF13717.1 gi|529079111|ref|YP_008378114.1| - 0.14 11.8 2.7 3.4 7.4 0.1 2.3 1 1 1 2 2 2 0 zinc-ribbon domain zf-HIT PF04438.11 gi|529079111|ref|YP_008378114.1| - 0.17 11.5 2.3 7.6 6.2 0.1 2.1 2 0 0 2 2 2 0 HIT zinc finger Zn_Tnp_IS1595 PF12760.2 gi|529079111|ref|YP_008378114.1| - 0.19 11.5 2.7 5.7 6.8 2.2 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|529079111|ref|YP_008378114.1| - 0.21 11.1 3.1 2.8 7.6 0.1 2.3 1 1 1 2 2 2 0 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|529079111|ref|YP_008378114.1| - 0.43 10.3 2.9 0.96 9.2 2.0 1.6 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 Zn_Tnp_IS1 PF03811.8 gi|529079111|ref|YP_008378114.1| - 0.93 9.0 5.4 0.2 11.1 0.6 1.9 1 1 1 2 2 2 0 InsA N-terminal domain zf-trcl PF13451.1 gi|529079111|ref|YP_008378114.1| - 1.3 8.6 4.1 7 6.3 0.4 2.1 1 1 1 2 2 2 0 Probable zinc-binding domain zf-Di19 PF05605.7 gi|529079111|ref|YP_008378114.1| - 1.5 8.9 3.8 2.2 8.4 0.2 2.0 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding RRN7 PF11781.3 gi|529079111|ref|YP_008378114.1| - 1.7 8.1 4.9 0.71 9.4 0.2 2.1 1 1 1 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-LSD1 PF06943.7 gi|529079111|ref|YP_008378114.1| - 3.6 7.2 5.5 18 5.0 0.1 2.3 2 1 1 3 3 3 0 LSD1 zinc finger EIF_2_alpha PF07541.7 gi|529079112|ref|YP_008378115.1| - 1e-30 105.7 0.0 1.7e-30 105.0 0.0 1.3 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|529079112|ref|YP_008378115.1| - 3.2e-14 52.7 0.8 6.4e-14 51.7 0.5 1.5 1 0 0 1 1 1 1 S1 RNA binding domain EXOSC1 PF10447.4 gi|529079112|ref|YP_008378115.1| - 0.064 13.2 0.1 8.8 6.3 0.2 2.4 2 1 0 2 2 2 0 Exosome component EXOSC1/CSL4 cwf21 PF08312.7 gi|529079112|ref|YP_008378115.1| - 0.47 10.3 0.1 0.47 10.3 0.1 2.2 3 0 0 3 3 3 0 cwf21 domain IFT46_B_C PF12317.3 gi|529079112|ref|YP_008378115.1| - 0.76 9.1 3.1 3.6 6.8 1.0 2.3 1 1 1 3 3 3 0 Intraflagellar transport complex B protein 46 C terminal Nop10p PF04135.7 gi|529079113|ref|YP_008378116.1| - 7.9e-25 86.3 0.5 8.7e-25 86.2 0.4 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family Nudix_N_2 PF14803.1 gi|529079113|ref|YP_008378116.1| - 0.048 13.3 0.2 0.12 12.0 0.2 1.7 1 0 0 1 1 1 0 Nudix N-terminal A2L_zn_ribbon PF08792.5 gi|529079113|ref|YP_008378116.1| - 0.053 12.9 0.5 0.34 10.4 0.1 2.0 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-ribbon_3 PF13248.1 gi|529079113|ref|YP_008378116.1| - 0.088 12.0 1.1 0.13 11.4 0.4 1.5 2 0 0 2 2 2 0 zinc-ribbon domain PAC2 PF09754.4 gi|529079114|ref|YP_008378117.1| - 1e-51 175.9 0.3 1.1e-51 175.7 0.2 1.0 1 0 0 1 1 1 1 PAC2 family PALP PF00291.20 gi|529079115|ref|YP_008378118.1| - 3.9e-40 137.9 4.7 5e-40 137.6 3.2 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DZR PF12773.2 gi|529079115|ref|YP_008378118.1| - 0.022 14.5 1.1 0.041 13.7 0.7 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|529079115|ref|YP_008378118.1| - 0.033 13.4 3.5 0.076 12.2 2.4 1.6 1 0 0 1 1 1 0 zinc-ribbon domain DUF2752 PF10825.3 gi|529079115|ref|YP_008378118.1| - 0.066 13.2 0.2 0.066 13.2 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) zinc_ribbon_2 PF13240.1 gi|529079115|ref|YP_008378118.1| - 0.071 12.6 2.2 0.12 11.8 1.5 1.4 1 0 0 1 1 1 0 zinc-ribbon domain HypA PF01155.14 gi|529079115|ref|YP_008378118.1| - 0.085 12.5 0.2 0.16 11.6 0.2 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-Mss51 PF13824.1 gi|529079115|ref|YP_008378118.1| - 0.096 12.5 2.7 0.18 11.6 1.9 1.4 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Sgf11 PF08209.6 gi|529079115|ref|YP_008378118.1| - 0.18 11.1 0.2 6.6 6.1 0.0 2.5 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Zn-ribbon_8 PF09723.5 gi|529079115|ref|YP_008378118.1| - 2 8.4 6.2 8.8 6.3 4.3 1.9 1 1 0 1 1 1 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|529079115|ref|YP_008378118.1| - 6.7 6.1 6.3 13 5.1 4.4 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding HTH_24 PF13412.1 gi|529079118|ref|YP_008378121.1| - 2.1e-10 39.7 0.0 3.6e-10 39.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|529079118|ref|YP_008378121.1| - 2.8e-10 39.6 1.2 7.9e-10 38.2 0.1 2.3 3 0 0 3 3 2 1 MarR family MarR PF01047.17 gi|529079118|ref|YP_008378121.1| - 1.1e-08 34.6 0.0 2.5e-08 33.5 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|529079118|ref|YP_008378121.1| - 2.5e-08 34.1 0.1 1.1e-07 32.0 0.0 2.1 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|529079118|ref|YP_008378121.1| - 4.1e-06 26.4 0.0 1.8e-05 24.4 0.0 2.0 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_20 PF12840.2 gi|529079118|ref|YP_008378121.1| - 1.1e-05 25.0 0.0 2.4e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.1 gi|529079118|ref|YP_008378121.1| - 7.6e-05 22.4 0.0 0.00011 21.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_11 PF08279.7 gi|529079118|ref|YP_008378121.1| - 9.9e-05 21.9 0.0 0.00016 21.2 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.5 gi|529079118|ref|YP_008378121.1| - 0.00017 21.0 0.0 0.00037 20.0 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_13 PF11972.3 gi|529079118|ref|YP_008378121.1| - 0.00029 20.6 0.1 0.00072 19.3 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain TrmB PF01978.14 gi|529079118|ref|YP_008378121.1| - 0.0012 18.4 0.1 0.0023 17.6 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|529079118|ref|YP_008378121.1| - 0.0015 18.1 0.0 0.0023 17.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DUF387 PF04079.11 gi|529079118|ref|YP_008378121.1| - 0.0019 17.5 0.1 0.0039 16.5 0.0 1.4 1 0 0 1 1 1 1 Putative transcriptional regulators (Ypuh-like) DUF4423 PF14394.1 gi|529079118|ref|YP_008378121.1| - 0.0032 17.0 0.0 0.0047 16.4 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) Fe_dep_repress PF01325.14 gi|529079118|ref|YP_008378121.1| - 0.0046 16.8 0.0 0.0085 16.0 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.15 gi|529079118|ref|YP_008378121.1| - 0.0047 17.0 0.0 0.011 15.8 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator HTH_12 PF08461.5 gi|529079118|ref|YP_008378121.1| - 0.0087 15.7 0.0 0.02 14.6 0.0 1.6 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_23 PF13384.1 gi|529079118|ref|YP_008378121.1| - 0.0099 15.5 0.0 0.023 14.3 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain GntR PF00392.16 gi|529079118|ref|YP_008378121.1| - 0.01 15.2 0.4 0.067 12.6 0.1 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family FaeA PF04703.7 gi|529079118|ref|YP_008378121.1| - 0.015 15.4 0.2 0.27 11.4 0.0 2.3 2 0 0 2 2 2 0 FaeA-like protein HTH_36 PF13730.1 gi|529079118|ref|YP_008378121.1| - 0.016 15.3 0.0 0.023 14.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Rio2_N PF09202.6 gi|529079118|ref|YP_008378121.1| - 0.028 14.4 0.0 0.053 13.5 0.0 1.4 1 0 0 1 1 1 0 Rio2, N-terminal HTH_AsnC-type PF13404.1 gi|529079118|ref|YP_008378121.1| - 0.042 13.3 0.3 0.14 11.7 0.0 2.1 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HemN_C PF06969.11 gi|529079118|ref|YP_008378121.1| - 0.043 13.8 0.0 0.092 12.8 0.0 1.6 1 0 0 1 1 1 0 HemN C-terminal domain LexA_DNA_bind PF01726.11 gi|529079118|ref|YP_008378121.1| - 0.052 13.1 0.0 0.12 12.0 0.0 1.6 1 0 0 1 1 1 0 LexA DNA binding domain Mnd1 PF03962.10 gi|529079118|ref|YP_008378121.1| - 0.064 12.9 0.0 0.098 12.3 0.0 1.2 1 0 0 1 1 1 0 Mnd1 family DUF4364 PF14277.1 gi|529079118|ref|YP_008378121.1| - 0.081 12.5 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) RepL PF05732.6 gi|529079118|ref|YP_008378121.1| - 0.11 11.6 0.0 1 8.5 0.0 2.0 2 0 0 2 2 2 0 Firmicute plasmid replication protein (RepL) NMD3 PF04981.8 gi|529079118|ref|YP_008378121.1| - 0.13 11.3 0.0 0.19 10.8 0.0 1.2 1 0 0 1 1 1 0 NMD3 family TPR_1 PF00515.23 gi|529079119|ref|YP_008378122.1| - 0.42 10.3 1.8 0.56 9.9 0.6 1.7 2 1 0 2 2 2 0 Tetratricopeptide repeat Diphthamide_syn PF01866.12 gi|529079120|ref|YP_008378123.1| - 3.3e-92 309.0 0.0 3.8e-92 308.7 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein Methyltransf_31 PF13847.1 gi|529079121|ref|YP_008378124.1| - 4.6e-15 55.5 0.0 7.6e-15 54.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|529079121|ref|YP_008378124.1| - 7.8e-14 51.9 0.0 2e-13 50.6 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|529079121|ref|YP_008378124.1| - 1.9e-13 50.9 1.0 2.5e-13 50.5 0.2 1.8 2 1 0 2 2 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|529079121|ref|YP_008378124.1| - 4.2e-12 46.3 0.0 6.9e-12 45.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|529079121|ref|YP_008378124.1| - 4.9e-10 39.6 0.0 1e-09 38.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|529079121|ref|YP_008378124.1| - 1.1e-08 35.0 1.5 2.4e-08 34.0 1.1 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|529079121|ref|YP_008378124.1| - 2.4e-08 33.8 0.0 5.7e-08 32.6 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|529079121|ref|YP_008378124.1| - 1.4e-06 27.5 0.1 5.3e-06 25.7 0.0 1.7 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family MTS PF05175.9 gi|529079121|ref|YP_008378124.1| - 1.5e-05 24.4 0.0 2.2e-05 23.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain DREV PF05219.7 gi|529079121|ref|YP_008378124.1| - 0.0004 19.3 0.0 0.00061 18.7 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase PrmA PF06325.8 gi|529079121|ref|YP_008378124.1| - 0.0032 16.6 0.1 0.0045 16.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.1 gi|529079121|ref|YP_008378124.1| - 0.0069 16.0 0.0 0.0095 15.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|529079121|ref|YP_008378124.1| - 0.011 14.8 0.0 0.015 14.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase ADH_zinc_N PF00107.21 gi|529079121|ref|YP_008378124.1| - 0.029 13.8 0.1 0.064 12.8 0.1 1.7 1 0 0 1 1 1 0 Zinc-binding dehydrogenase CMAS PF02353.15 gi|529079121|ref|YP_008378124.1| - 0.034 13.2 0.0 0.049 12.7 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase UPF0020 PF01170.13 gi|529079121|ref|YP_008378124.1| - 0.076 12.5 0.1 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 RNase_P_Rpp14 PF01900.14 gi|529079122|ref|YP_008378125.1| - 3.8e-22 78.2 0.0 4.6e-22 77.9 0.0 1.1 1 0 0 1 1 1 1 Rpp14/Pop5 family Proteasome PF00227.21 gi|529079123|ref|YP_008378126.1| - 4.5e-59 198.9 0.0 5.7e-59 198.6 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|529079123|ref|YP_008378126.1| - 2.6e-14 52.2 0.1 5e-14 51.3 0.1 1.5 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature SBDS PF01172.13 gi|529079124|ref|YP_008378127.1| - 5.4e-24 83.8 0.0 8.3e-24 83.2 0.0 1.3 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|529079124|ref|YP_008378127.1| - 1.6e-17 63.4 0.0 2.3e-17 62.8 0.0 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain Lar_restr_allev PF14354.1 gi|529079125|ref|YP_008378128.1| - 0.0046 17.2 3.3 0.009 16.2 2.3 1.5 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-HYPF PF07503.7 gi|529079125|ref|YP_008378128.1| - 0.57 9.6 4.3 3.2 7.2 3.0 2.1 1 1 0 1 1 1 0 HypF finger STT3 PF02516.9 gi|529079126|ref|YP_008378129.1| - 9.9e-19 67.6 25.6 6.5e-18 64.9 17.7 2.1 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit DUF368 PF04018.8 gi|529079127|ref|YP_008378130.1| - 4.5e-68 229.2 18.2 5.6e-68 228.9 12.6 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF368) YcgR PF07317.7 gi|529079127|ref|YP_008378130.1| - 0.055 13.2 0.0 0.094 12.4 0.0 1.4 1 0 0 1 1 1 0 Flagellar regulator YcgR Glycos_transf_1 PF00534.15 gi|529079128|ref|YP_008378131.1| - 1.9e-24 85.9 0.0 9e-23 80.5 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|529079128|ref|YP_008378131.1| - 2.5e-15 56.5 0.2 5e-15 55.5 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|529079128|ref|YP_008378131.1| - 3.1e-15 56.5 0.0 5.3e-14 52.5 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|529079128|ref|YP_008378131.1| - 2.6e-11 43.9 0.7 7.1e-11 42.4 0.5 1.7 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|529079128|ref|YP_008378131.1| - 2.7e-08 33.7 0.0 6.2e-08 32.5 0.0 1.6 1 0 0 1 1 1 1 Glycosyltransferase Family 4 DUF1816 PF08846.5 gi|529079128|ref|YP_008378131.1| - 0.079 12.6 0.3 0.16 11.6 0.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1816) DUF1902 PF08972.6 gi|529079130|ref|YP_008378133.1| - 0.64 9.6 3.2 0.94 9.0 2.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1902) T2SE PF00437.15 gi|529079132|ref|YP_008378135.1| - 2.2e-51 174.3 0.0 3.2e-51 173.8 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|529079132|ref|YP_008378135.1| - 0.025 14.0 0.0 0.048 13.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain T2SF PF00482.18 gi|529079133|ref|YP_008378136.1| - 6.5e-32 110.0 14.4 1.1e-20 73.7 1.5 3.8 3 1 1 4 4 4 2 Type II secretion system (T2SS), protein F DUF3959 PF13105.1 gi|529079133|ref|YP_008378136.1| - 4 6.6 6.0 0.21 10.8 0.3 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3959) Glyoxalase PF00903.20 gi|529079134|ref|YP_008378137.1| - 7e-28 97.1 0.0 2.3e-15 56.6 0.0 3.1 2 1 1 3 3 3 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|529079134|ref|YP_008378137.1| - 5.4e-14 52.7 1.5 2.6e-07 31.2 0.0 2.6 2 1 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_4 PF13669.1 gi|529079134|ref|YP_008378137.1| - 0.00076 19.4 0.1 1.7 8.6 0.0 3.3 1 1 2 3 3 3 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DoxX PF07681.7 gi|529079135|ref|YP_008378138.1| - 3.2e-10 40.2 10.2 3.2e-10 40.2 7.0 1.8 2 0 0 2 2 2 1 DoxX SURF4 PF02077.10 gi|529079135|ref|YP_008378138.1| - 7.7e-05 22.1 1.9 0.00047 19.6 1.3 1.9 1 1 0 1 1 1 1 SURF4 family HR_lesion PF05514.6 gi|529079135|ref|YP_008378138.1| - 0.0014 18.4 0.6 0.022 14.6 0.1 2.0 1 1 1 2 2 2 1 HR-like lesion-inducing DoxX_2 PF13564.1 gi|529079135|ref|YP_008378138.1| - 0.046 13.6 13.5 0.1 12.6 8.8 1.8 1 1 1 2 2 2 0 DoxX-like family Rab5ip PF07019.7 gi|529079135|ref|YP_008378138.1| - 0.19 11.8 2.4 0.34 11.0 0.2 2.2 2 0 0 2 2 2 0 Rab5-interacting protein (Rab5ip) HxlR PF01638.12 gi|529079136|ref|YP_008378139.1| - 8.6e-22 76.5 0.0 1e-21 76.3 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_27 PF13463.1 gi|529079136|ref|YP_008378139.1| - 2.9e-07 30.6 0.2 4.7e-07 30.0 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|529079136|ref|YP_008378139.1| - 1.9e-06 27.8 0.0 2.5e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|529079136|ref|YP_008378139.1| - 3.7e-05 23.2 0.2 5.9e-05 22.6 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|529079136|ref|YP_008378139.1| - 6.2e-05 22.7 0.3 9.8e-05 22.0 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|529079136|ref|YP_008378139.1| - 0.00013 21.5 0.0 0.00019 20.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family PadR PF03551.9 gi|529079136|ref|YP_008378139.1| - 0.00038 20.1 0.0 0.00057 19.6 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family MarR PF01047.17 gi|529079136|ref|YP_008378139.1| - 0.0006 19.4 0.0 0.00092 18.8 0.0 1.3 1 0 0 1 1 1 1 MarR family Trp_repressor PF01371.14 gi|529079136|ref|YP_008378139.1| - 0.003 17.4 0.0 0.0043 16.9 0.0 1.3 1 0 0 1 1 1 1 Trp repressor protein HTH_45 PF14947.1 gi|529079136|ref|YP_008378139.1| - 0.0083 15.9 0.0 0.01 15.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.14 gi|529079136|ref|YP_008378139.1| - 0.018 14.7 0.1 0.027 14.1 0.1 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.12 gi|529079136|ref|YP_008378139.1| - 0.02 14.4 0.0 0.026 14.0 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit PAS_6 PF08348.6 gi|529079136|ref|YP_008378139.1| - 0.054 13.0 0.0 0.07 12.6 0.0 1.1 1 0 0 1 1 1 0 YheO-like PAS domain DUF505 PF04458.7 gi|529079136|ref|YP_008378139.1| - 0.057 11.5 0.0 0.057 11.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) HTH_24 PF13412.1 gi|529079136|ref|YP_008378139.1| - 0.11 11.8 0.0 0.19 11.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF4364 PF14277.1 gi|529079136|ref|YP_008378139.1| - 0.12 11.9 0.0 0.19 11.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) DEAD_assoc PF08494.6 gi|529079137|ref|YP_008378140.1| - 1.8e-51 174.5 0.2 3.9e-51 173.4 0.1 1.6 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|529079137|ref|YP_008378140.1| - 6.4e-31 107.1 0.0 5.6e-29 100.7 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|529079137|ref|YP_008378140.1| - 3e-15 55.8 0.0 6.6e-14 51.5 0.0 2.5 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|529079137|ref|YP_008378140.1| - 1.2e-09 38.2 0.0 2.6e-09 37.1 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit UvrD-helicase PF00580.16 gi|529079137|ref|YP_008378140.1| - 0.16 11.2 0.0 3.3 6.9 0.0 2.7 3 0 0 3 3 3 0 UvrD/REP helicase N-terminal domain DUF457 PF04307.9 gi|529079138|ref|YP_008378141.1| - 5.5e-11 42.0 28.5 6.5e-07 28.8 4.5 3.2 2 1 0 2 2 2 2 Predicted membrane-bound metal-dependent hydrolase (DUF457) Glycoprotein_B PF00606.13 gi|529079138|ref|YP_008378141.1| - 0.016 13.2 2.3 0.022 12.8 1.6 1.1 1 0 0 1 1 1 0 Herpesvirus Glycoprotein B DUF2238 PF09997.4 gi|529079139|ref|YP_008378142.1| - 8.7e-05 21.9 0.8 0.00014 21.2 0.6 1.5 1 1 0 1 1 1 1 Predicted membrane protein (DUF2238) DUF2157 PF09925.4 gi|529079139|ref|YP_008378142.1| - 0.012 15.2 0.7 0.021 14.4 0.5 1.6 1 0 0 1 1 1 0 Predicted membrane protein (DUF2157) Polysacc_synt_C PF14667.1 gi|529079139|ref|YP_008378142.1| - 4.6 7.0 9.0 38 4.0 2.3 3.0 1 1 2 3 3 3 0 Polysaccharide biosynthesis C-terminal domain FG-GAP_2 PF14312.1 gi|529079141|ref|YP_008378144.1| - 1.5e-29 101.7 39.7 1.5e-08 34.4 0.6 7.5 7 0 0 7 7 7 7 FG-GAP repeat DUF1513 PF07433.6 gi|529079141|ref|YP_008378144.1| - 0.00072 18.5 1.4 1 8.2 0.1 3.6 2 2 1 4 4 4 2 Protein of unknown function (DUF1513) GlutR_N PF05201.10 gi|529079142|ref|YP_008378145.1| - 8.4e-35 119.5 0.1 3.3e-34 117.6 0.0 2.1 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.15 gi|529079142|ref|YP_008378145.1| - 1.2e-29 103.1 2.0 1.3e-29 103.0 0.2 1.8 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.15 gi|529079142|ref|YP_008378145.1| - 2.3e-24 85.2 1.1 5.3e-24 84.0 0.8 1.6 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain OCD_Mu_crystall PF02423.10 gi|529079142|ref|YP_008378145.1| - 1.2e-05 24.2 3.3 2.3e-05 23.3 2.3 1.4 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Saccharop_dh PF03435.13 gi|529079142|ref|YP_008378145.1| - 0.00018 20.5 1.0 0.00037 19.5 0.4 1.8 2 0 0 2 2 2 1 Saccharopine dehydrogenase THF_DHG_CYH_C PF02882.14 gi|529079142|ref|YP_008378145.1| - 0.0086 15.1 0.3 0.038 13.0 0.2 2.0 1 1 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GFO_IDH_MocA PF01408.17 gi|529079142|ref|YP_008378145.1| - 0.023 15.1 2.1 0.026 15.0 0.1 2.1 2 1 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold DUF1932 PF09130.6 gi|529079142|ref|YP_008378145.1| - 0.05 13.3 0.7 0.16 11.7 0.5 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF1932) DUF43 PF01861.11 gi|529079142|ref|YP_008378145.1| - 0.06 12.3 0.0 0.1 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF43 NAD_binding_7 PF13241.1 gi|529079142|ref|YP_008378145.1| - 0.078 13.2 0.3 0.078 13.2 0.2 1.9 2 0 0 2 2 2 0 Putative NAD(P)-binding Robl_LC7 PF03259.12 gi|529079142|ref|YP_008378145.1| - 3.9 7.1 7.6 2.9 7.5 0.3 3.1 3 0 0 3 3 3 0 Roadblock/LC7 domain CSD PF00313.17 gi|529079144|ref|YP_008378147.1| - 5e-21 74.2 0.1 5.6e-21 74.1 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|529079144|ref|YP_008378147.1| - 0.0033 17.1 1.3 0.0049 16.5 0.9 1.4 1 1 0 1 1 1 1 S1-like CusF_Ec PF11604.3 gi|529079144|ref|YP_008378147.1| - 0.028 14.2 0.0 0.035 13.9 0.0 1.3 1 0 0 1 1 1 0 Copper binding periplasmic protein CusF OB_RNB PF08206.6 gi|529079144|ref|YP_008378147.1| - 0.028 13.8 2.2 0.042 13.3 1.5 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain CSD PF00313.17 gi|529079145|ref|YP_008378148.1| - 1.6e-20 72.6 0.2 1.8e-20 72.4 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|529079145|ref|YP_008378148.1| - 0.0045 16.6 1.6 0.0068 16.1 1.1 1.4 1 1 0 1 1 1 1 S1-like OB_RNB PF08206.6 gi|529079145|ref|YP_008378148.1| - 0.036 13.5 2.6 0.054 13.0 1.8 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain CusF_Ec PF11604.3 gi|529079145|ref|YP_008378148.1| - 0.072 12.9 0.1 0.1 12.4 0.0 1.4 1 1 0 1 1 1 0 Copper binding periplasmic protein CusF Prenyltransf PF01255.14 gi|529079146|ref|YP_008378149.1| - 7.2e-71 237.8 0.0 9.2e-71 237.5 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase Aldo_ket_red PF00248.16 gi|529079147|ref|YP_008378150.1| - 1.8e-46 158.2 0.0 2.6e-46 157.6 0.0 1.3 1 0 0 1 1 1 1 Aldo/keto reductase family Fer4_17 PF13534.1 gi|529079147|ref|YP_008378150.1| - 9.7e-11 41.8 5.8 2e-10 40.8 4.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|529079147|ref|YP_008378150.1| - 3.9e-10 39.8 8.3 6.9e-10 39.0 5.7 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|529079147|ref|YP_008378150.1| - 2.9e-09 36.7 6.5 5.3e-09 35.9 4.5 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|529079147|ref|YP_008378150.1| - 3.8e-08 33.6 2.9 0.0003 21.1 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|529079147|ref|YP_008378150.1| - 1.9e-06 27.6 4.7 0.016 15.0 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|529079147|ref|YP_008378150.1| - 0.00013 21.7 13.6 0.0021 17.8 10.1 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|529079147|ref|YP_008378150.1| - 0.00016 21.1 4.4 0.00016 21.1 3.1 2.8 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_16 PF13484.1 gi|529079147|ref|YP_008378150.1| - 0.001 19.7 4.4 0.23 12.2 0.4 2.6 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.2 gi|529079147|ref|YP_008378150.1| - 0.0012 19.1 12.0 0.0043 17.4 8.4 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|529079147|ref|YP_008378150.1| - 0.0024 17.6 2.4 0.0024 17.6 1.6 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_20 PF14691.1 gi|529079147|ref|YP_008378150.1| - 0.0035 16.9 2.5 0.15 11.6 0.1 2.2 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_2 PF12797.2 gi|529079147|ref|YP_008378150.1| - 0.011 15.6 14.3 0.023 14.5 2.7 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|529079147|ref|YP_008378150.1| - 0.028 14.7 14.7 0.033 14.5 3.1 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|529079147|ref|YP_008378150.1| - 4.4 8.1 16.3 1.2 9.8 4.5 2.8 2 1 0 2 2 2 0 4Fe-4S binding domain FAD_binding_2 PF00890.19 gi|529079149|ref|YP_008378152.1| - 1.6e-125 419.2 8.5 1.6e-125 419.2 5.9 1.6 2 0 0 2 2 2 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|529079149|ref|YP_008378152.1| - 2.7e-36 124.2 0.2 5.1e-36 123.3 0.1 1.5 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.9 gi|529079149|ref|YP_008378152.1| - 1.9e-08 34.4 12.4 2.3e-06 27.6 8.6 3.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|529079149|ref|YP_008378152.1| - 7.9e-08 31.5 8.9 1.8e-06 27.1 4.3 2.9 2 1 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|529079149|ref|YP_008378152.1| - 2.4e-05 22.9 1.6 5.7e-05 21.7 0.0 2.3 3 0 0 3 3 3 1 HI0933-like protein Thi4 PF01946.12 gi|529079149|ref|YP_008378152.1| - 7.4e-05 21.9 2.6 0.00071 18.7 0.4 2.8 3 0 0 3 3 3 1 Thi4 family GIDA PF01134.17 gi|529079149|ref|YP_008378152.1| - 0.00034 19.6 4.4 0.00034 19.6 3.1 1.8 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|529079149|ref|YP_008378152.1| - 0.0013 17.9 9.1 0.0031 16.6 6.3 1.8 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|529079149|ref|YP_008378152.1| - 0.0084 15.2 1.4 0.0084 15.2 1.0 1.8 2 0 0 2 2 2 1 FAD binding domain AlaDh_PNT_C PF01262.16 gi|529079149|ref|YP_008378152.1| - 0.0087 15.6 0.1 0.018 14.5 0.0 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain DUF1326 PF07040.6 gi|529079149|ref|YP_008378152.1| - 0.026 14.2 0.7 4.3 7.0 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1326) NAD_binding_7 PF13241.1 gi|529079149|ref|YP_008378152.1| - 0.037 14.2 0.0 0.079 13.2 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding Pyr_redox PF00070.22 gi|529079149|ref|YP_008378152.1| - 0.044 14.1 1.1 0.12 12.7 0.8 1.8 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|529079149|ref|YP_008378152.1| - 0.074 13.0 1.1 0.27 11.2 0.2 2.5 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|529079149|ref|YP_008378152.1| - 0.13 12.3 1.1 0.3 11.0 0.8 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Fer2_3 PF13085.1 gi|529079150|ref|YP_008378153.1| - 4.8e-32 110.0 0.2 2.1e-31 107.9 0.0 2.0 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.1 gi|529079150|ref|YP_008378153.1| - 2.4e-12 46.6 4.3 6.7e-12 45.2 3.0 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|529079150|ref|YP_008378153.1| - 2.2e-07 31.1 4.4 5.5e-07 29.8 3.0 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|529079150|ref|YP_008378153.1| - 2.2e-07 31.1 2.3 8.7e-07 29.2 1.5 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|529079150|ref|YP_008378153.1| - 1.9e-06 27.5 5.4 4.9e-06 26.2 3.8 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|529079150|ref|YP_008378153.1| - 1.1e-05 25.7 10.1 0.0046 17.3 0.1 2.6 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|529079150|ref|YP_008378153.1| - 3.4e-05 24.0 7.6 3.4e-05 24.0 5.3 2.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|529079150|ref|YP_008378153.1| - 0.0022 17.8 1.2 0.0022 17.8 0.8 2.7 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_4 PF12800.2 gi|529079150|ref|YP_008378153.1| - 0.0041 17.3 9.4 0.022 15.0 2.1 2.7 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4 PF00037.22 gi|529079150|ref|YP_008378153.1| - 0.0056 16.2 9.0 0.016 14.7 1.7 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_20 PF14691.1 gi|529079150|ref|YP_008378153.1| - 0.0088 15.6 6.9 0.6 9.7 0.3 2.4 1 1 1 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_16 PF13484.1 gi|529079150|ref|YP_008378153.1| - 0.02 15.6 8.7 0.14 12.9 1.3 2.8 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|529079150|ref|YP_008378153.1| - 0.09 12.6 10.7 0.075 12.9 2.3 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain YtkA PF13115.1 gi|529079150|ref|YP_008378153.1| - 0.095 13.0 0.0 0.38 11.1 0.0 2.0 2 0 0 2 2 1 0 YtkA-like Fer4_21 PF14697.1 gi|529079150|ref|YP_008378153.1| - 1.3 8.8 10.6 20 5.1 7.3 2.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|529079150|ref|YP_008378153.1| - 3.4 8.4 15.6 2 9.1 0.2 2.8 3 0 0 3 3 2 0 4Fe-4S binding domain Prp19_bind PF06991.6 gi|529079150|ref|YP_008378153.1| - 5.2 6.2 12.8 2.3 7.4 3.8 2.3 2 1 0 2 2 2 0 Splicing factor, Prp19-binding domain Sdh_cyt PF01127.17 gi|529079151|ref|YP_008378154.1| - 5.8e-13 48.7 5.1 7.3e-13 48.4 3.6 1.1 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Sdh_cyt PF01127.17 gi|529079152|ref|YP_008378155.1| - 5.7e-21 74.5 3.5 6.2e-21 74.4 2.4 1.0 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Ferric_reduct PF01794.14 gi|529079152|ref|YP_008378155.1| - 0.25 11.4 4.7 0.42 10.7 3.3 1.5 1 1 0 1 1 1 0 Ferric reductase like transmembrane component PgaD PF13994.1 gi|529079152|ref|YP_008378155.1| - 0.64 9.5 5.4 0.36 10.3 2.5 1.4 2 0 0 2 2 2 0 PgaD-like protein Glyco_hydro_3 PF00933.16 gi|529079153|ref|YP_008378156.1| - 6.5e-84 281.4 0.0 5.4e-83 278.4 0.0 2.0 1 1 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.17 gi|529079153|ref|YP_008378156.1| - 4.4e-65 219.3 0.1 2.4e-64 216.9 0.1 2.1 1 1 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.1 gi|529079153|ref|YP_008378156.1| - 2.8e-24 84.8 0.1 6e-24 83.7 0.1 1.6 1 0 0 1 1 1 1 Fibronectin type III-like domain UPF0150 PF03681.10 gi|529079154|ref|YP_008378157.1| - 1.2e-06 28.0 0.1 2e-06 27.3 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) YcfA PF07927.7 gi|529079155|ref|YP_008378158.1| - 8.8e-06 25.5 0.0 1.2e-05 25.0 0.0 1.3 1 0 0 1 1 1 1 YcfA-like protein DUF309 PF03745.9 gi|529079156|ref|YP_008378159.1| - 1.6e-13 49.8 0.2 2.4e-13 49.3 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF309) CBS PF00571.23 gi|529079158|ref|YP_008378161.1| - 4.5e-25 87.1 5.4 6.8e-15 54.5 1.0 2.7 3 0 0 3 3 3 2 CBS domain ParBc PF02195.13 gi|529079158|ref|YP_008378161.1| - 1e-09 38.3 0.1 6e-09 35.8 0.1 2.1 1 1 0 1 1 1 1 ParB-like nuclease domain ParBc_2 PF08857.6 gi|529079158|ref|YP_008378161.1| - 0.00029 20.6 0.1 0.0043 16.8 0.0 2.4 1 1 0 1 1 1 1 Putative ParB-like nuclease DUF1015 PF06245.6 gi|529079158|ref|YP_008378161.1| - 0.0013 17.3 0.0 0.0018 16.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1015) DHH PF01368.15 gi|529079159|ref|YP_008378162.1| - 1.2e-14 54.2 0.0 2.6e-14 53.0 0.0 1.5 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|529079159|ref|YP_008378162.1| - 2.3e-13 49.6 0.1 5.5e-13 48.4 0.1 1.6 1 0 0 1 1 1 1 DHHA1 domain TrkA_N PF02254.13 gi|529079159|ref|YP_008378162.1| - 7.4e-05 22.7 0.2 0.00025 21.0 0.1 1.9 1 0 0 1 1 1 1 TrkA-N domain AMP-binding PF00501.23 gi|529079160|ref|YP_008378163.1| - 6.9e-84 281.6 0.3 8.2e-84 281.3 0.2 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|529079160|ref|YP_008378163.1| - 1.2e-16 61.3 1.3 2.6e-16 60.3 0.9 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain HTH_24 PF13412.1 gi|529079161|ref|YP_008378164.1| - 5e-15 54.6 0.0 7.7e-15 54.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|529079161|ref|YP_008378164.1| - 2e-11 43.4 0.0 3.3e-11 42.7 0.0 1.4 1 0 0 1 1 1 1 AsnC family HTH_AsnC-type PF13404.1 gi|529079161|ref|YP_008378164.1| - 2.5e-11 42.9 0.1 5.7e-11 41.7 0.0 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|529079161|ref|YP_008378164.1| - 9.8e-09 34.7 0.1 2.9e-08 33.2 0.0 1.8 2 0 0 2 2 1 1 HTH domain HTH_23 PF13384.1 gi|529079161|ref|YP_008378164.1| - 3.3e-07 29.7 0.0 6.9e-07 28.7 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_IclR PF09339.5 gi|529079161|ref|YP_008378164.1| - 1.2e-06 28.0 0.0 2.2e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.14 gi|529079161|ref|YP_008378164.1| - 5.6e-06 26.2 0.1 1.8e-05 24.5 0.1 1.9 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_DeoR PF08220.7 gi|529079161|ref|YP_008378164.1| - 2e-05 24.0 0.0 3.4e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_20 PF12840.2 gi|529079161|ref|YP_008378164.1| - 2.2e-05 24.1 0.0 5.8e-05 22.8 0.0 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|529079161|ref|YP_008378164.1| - 2.5e-05 23.6 0.0 8.4e-05 21.9 0.0 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_28 PF13518.1 gi|529079161|ref|YP_008378164.1| - 2.5e-05 24.1 0.0 4.6e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|529079161|ref|YP_008378164.1| - 4.1e-05 23.1 0.1 8.4e-05 22.2 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.16 gi|529079161|ref|YP_008378164.1| - 5.6e-05 22.4 0.0 0.0001 21.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_36 PF13730.1 gi|529079161|ref|YP_008378164.1| - 0.00011 22.1 0.0 0.00018 21.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|529079161|ref|YP_008378164.1| - 0.0002 20.9 0.0 0.00048 19.7 0.0 1.6 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|529079161|ref|YP_008378164.1| - 0.0002 20.9 0.0 0.00032 20.3 0.0 1.3 1 0 0 1 1 1 1 MarR family FaeA PF04703.7 gi|529079161|ref|YP_008378164.1| - 0.00027 21.0 0.0 0.00042 20.4 0.0 1.2 1 0 0 1 1 1 1 FaeA-like protein TFIIE_alpha PF02002.12 gi|529079161|ref|YP_008378164.1| - 0.00043 19.7 0.0 0.00069 19.0 0.0 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_5 PF01022.15 gi|529079161|ref|YP_008378164.1| - 0.00065 19.3 0.0 0.0012 18.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_29 PF13551.1 gi|529079161|ref|YP_008378164.1| - 0.00065 19.8 0.0 0.00097 19.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_10 PF04967.7 gi|529079161|ref|YP_008378164.1| - 0.00092 18.7 0.0 0.0016 17.9 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Rrf2 PF02082.15 gi|529079161|ref|YP_008378164.1| - 0.0011 18.9 0.0 0.0021 18.1 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_38 PF13936.1 gi|529079161|ref|YP_008378164.1| - 0.0021 17.5 0.0 0.0043 16.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_6 PF01418.12 gi|529079161|ref|YP_008378164.1| - 0.0029 17.2 0.0 0.0046 16.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain, rpiR family LacI PF00356.16 gi|529079161|ref|YP_008378164.1| - 0.0064 16.0 0.1 0.06 12.9 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family HTH_Crp_2 PF13545.1 gi|529079161|ref|YP_008378164.1| - 0.0099 15.6 0.0 0.02 14.6 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_1 PF00126.22 gi|529079161|ref|YP_008378164.1| - 0.018 14.7 0.0 0.037 13.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_34 PF13601.1 gi|529079161|ref|YP_008378164.1| - 0.019 14.9 0.0 0.046 13.7 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_Tnp_ISL3 PF13542.1 gi|529079161|ref|YP_008378164.1| - 0.021 13.9 0.0 0.049 12.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 GerE PF00196.14 gi|529079161|ref|YP_008378164.1| - 0.026 13.8 0.0 0.045 13.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family EAP30 PF04157.11 gi|529079161|ref|YP_008378164.1| - 0.028 13.5 0.0 0.045 12.9 0.0 1.3 1 0 0 1 1 1 0 EAP30/Vps36 family HTH_30 PF13556.1 gi|529079161|ref|YP_008378164.1| - 0.036 13.6 0.0 0.079 12.5 0.0 1.6 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain RPA_C PF08784.6 gi|529079161|ref|YP_008378164.1| - 0.036 14.4 0.0 0.091 13.1 0.0 1.6 2 0 0 2 2 1 0 Replication protein A C terminal FeoC PF09012.5 gi|529079161|ref|YP_008378164.1| - 0.042 13.5 0.0 0.068 12.8 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator Sigma70_r4 PF04545.11 gi|529079161|ref|YP_008378164.1| - 0.043 13.1 0.1 0.08 12.2 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_27 PF13463.1 gi|529079161|ref|YP_008378164.1| - 0.055 13.7 0.0 0.097 13.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF2250 PF10007.4 gi|529079161|ref|YP_008378164.1| - 0.068 13.0 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Penicillinase_R PF03965.11 gi|529079161|ref|YP_008378164.1| - 0.09 12.8 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 Penicillinase repressor HTH_17 PF12728.2 gi|529079161|ref|YP_008378164.1| - 0.091 13.0 0.0 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain TetR_N PF00440.18 gi|529079161|ref|YP_008378164.1| - 0.093 12.3 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family MerR PF00376.18 gi|529079161|ref|YP_008378164.1| - 0.098 12.2 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 MerR family regulatory protein Sigma70_r3 PF04539.11 gi|529079161|ref|YP_008378164.1| - 0.1 12.4 0.2 1.2 9.0 0.0 2.4 2 1 0 2 2 2 0 Sigma-70 region 3 PaaX PF07848.7 gi|529079161|ref|YP_008378164.1| - 0.13 12.3 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 PaaX-like protein Terminase_5 PF06056.7 gi|529079161|ref|YP_008378164.1| - 0.13 11.8 0.0 0.27 10.7 0.0 1.5 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_CodY PF08222.6 gi|529079161|ref|YP_008378164.1| - 0.14 11.4 0.1 0.35 10.2 0.0 1.6 2 0 0 2 2 1 0 CodY helix-turn-helix domain TPP_enzyme_C PF02775.16 gi|529079162|ref|YP_008378165.1| - 2.7e-32 111.4 0.0 3.9e-32 110.9 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|529079162|ref|YP_008378165.1| - 0.0018 18.1 0.3 0.0046 16.8 0.2 1.7 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal POR_N PF01855.14 gi|529079163|ref|YP_008378166.1| - 1.2e-49 168.9 0.6 2e-49 168.2 0.4 1.4 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|529079163|ref|YP_008378166.1| - 5.7e-45 153.3 0.1 1.2e-44 152.2 0.1 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.13 gi|529079163|ref|YP_008378166.1| - 7.1e-05 22.3 1.1 0.00013 21.4 0.2 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DUF3375 PF11855.3 gi|529079163|ref|YP_008378166.1| - 0.35 9.5 1.0 0.48 9.0 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3375) GFO_IDH_MocA PF01408.17 gi|529079165|ref|YP_008378168.1| - 7.5e-26 90.9 0.1 1.3e-25 90.1 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|529079165|ref|YP_008378168.1| - 7.5e-13 48.2 0.1 1.6e-12 47.2 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain F420_oxidored PF03807.12 gi|529079165|ref|YP_008378168.1| - 0.00079 19.8 1.2 0.0022 18.3 0.1 2.2 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Semialdhyde_dh PF01118.19 gi|529079165|ref|YP_008378168.1| - 0.0014 18.9 0.6 0.0036 17.5 0.1 1.9 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|529079165|ref|YP_008378168.1| - 0.008 15.3 0.0 0.014 14.5 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|529079165|ref|YP_008378168.1| - 0.023 13.7 1.7 0.037 12.9 1.2 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase DUF2525 PF10733.4 gi|529079165|ref|YP_008378168.1| - 0.056 13.2 0.1 0.15 11.9 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2525) CoA_binding_2 PF13380.1 gi|529079165|ref|YP_008378168.1| - 0.059 13.5 1.4 0.18 11.9 0.0 2.3 2 0 0 2 2 2 0 CoA binding domain HATPase_c PF02518.21 gi|529079166|ref|YP_008378169.1| - 1.3e-18 66.7 0.1 4.1e-18 65.1 0.1 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|529079166|ref|YP_008378169.1| - 1.9e-10 40.6 0.4 1.9e-10 40.6 0.3 2.2 1 1 1 2 2 2 1 Histidine kinase-like ATPase domain DUF2328 PF10090.4 gi|529079166|ref|YP_008378169.1| - 1.8e-05 24.0 0.1 2.7e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2328) HATPase_c_5 PF14501.1 gi|529079166|ref|YP_008378169.1| - 0.00049 19.7 0.0 0.0015 18.2 0.0 1.8 2 0 0 2 2 2 1 GHKL domain DNA_pol_A_exo1 PF01612.15 gi|529079166|ref|YP_008378169.1| - 0.03 13.7 0.0 0.078 12.4 0.0 1.6 1 0 0 1 1 1 0 3'-5' exonuclease NfeD PF01957.13 gi|529079166|ref|YP_008378169.1| - 4.1 7.5 12.3 0.053 13.6 2.6 2.3 2 1 1 3 3 3 0 NfeD-like C-terminal, partner-binding IncA PF04156.9 gi|529079166|ref|YP_008378169.1| - 9 5.8 15.0 31 4.0 6.5 2.5 1 1 1 2 2 2 0 IncA protein Usp PF00582.21 gi|529079167|ref|YP_008378170.1| - 1.5e-08 34.8 0.4 1.9e-08 34.5 0.3 1.1 1 0 0 1 1 1 1 Universal stress protein family CheC PF04509.7 gi|529079168|ref|YP_008378171.1| - 2.4e-15 55.9 0.9 4e-15 55.2 0.1 1.8 2 0 0 2 2 2 1 CheC-like family CheX PF13690.1 gi|529079168|ref|YP_008378171.1| - 1.4e-05 24.8 0.7 2.7e-05 23.9 0.0 1.8 2 1 0 2 2 2 1 Chemotaxis phosphatase CheX Methyltransf_3 PF01596.12 gi|529079169|ref|YP_008378172.1| - 1.4e-25 89.5 0.0 1.7e-25 89.2 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_24 PF13578.1 gi|529079169|ref|YP_008378172.1| - 5e-16 59.4 0.1 2e-15 57.5 0.1 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|529079169|ref|YP_008378172.1| - 2.4e-12 47.4 0.0 3.5e-12 46.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|529079169|ref|YP_008378172.1| - 1.6e-09 37.5 0.0 2.3e-09 36.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|529079169|ref|YP_008378172.1| - 1.3e-08 34.8 0.0 4e-08 33.2 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|529079169|ref|YP_008378172.1| - 2.8e-06 27.6 0.0 5.1e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|529079169|ref|YP_008378172.1| - 2.6e-05 23.6 0.0 3.8e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.14 gi|529079169|ref|YP_008378172.1| - 0.00013 21.5 0.0 0.00019 21.0 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_12 PF08242.7 gi|529079169|ref|YP_008378172.1| - 0.00068 20.0 0.0 0.0013 19.1 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Spermine_synth PF01564.12 gi|529079169|ref|YP_008378172.1| - 0.0013 17.7 0.0 0.0021 17.0 0.0 1.3 1 0 0 1 1 1 1 Spermine/spermidine synthase MAF_flag10 PF01973.13 gi|529079169|ref|YP_008378172.1| - 0.046 13.2 0.0 0.071 12.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF115 Ubie_methyltran PF01209.13 gi|529079169|ref|YP_008378172.1| - 0.049 12.7 0.0 0.068 12.2 0.0 1.1 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family MS_channel PF00924.13 gi|529079170|ref|YP_008378173.1| - 2.1e-31 108.9 2.5 4.4e-30 104.5 1.7 2.1 1 1 0 1 1 1 1 Mechanosensitive ion channel MFS_1 PF07690.11 gi|529079170|ref|YP_008378173.1| - 0.021 13.5 4.0 0.029 13.0 2.8 1.1 1 0 0 1 1 1 0 Major Facilitator Superfamily DUF3040 PF11239.3 gi|529079170|ref|YP_008378173.1| - 0.024 14.7 2.5 0.024 14.7 1.8 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3040) AhpC-TSA PF00578.16 gi|529079171|ref|YP_008378174.1| - 2.4e-15 56.2 0.0 3.7e-15 55.7 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|529079171|ref|YP_008378174.1| - 6.2e-12 45.2 0.0 7.7e-12 44.9 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin_2 PF13098.1 gi|529079171|ref|YP_008378174.1| - 4e-06 27.0 0.0 5.8e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|529079171|ref|YP_008378174.1| - 0.0004 20.4 0.0 0.00064 19.7 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like T4_deiodinase PF00837.12 gi|529079171|ref|YP_008378174.1| - 0.019 14.0 0.0 0.056 12.4 0.0 1.7 1 1 1 2 2 2 0 Iodothyronine deiodinase Thioredoxin PF00085.15 gi|529079171|ref|YP_008378174.1| - 0.076 12.7 0.0 0.24 11.0 0.0 1.7 2 0 0 2 2 2 0 Thioredoxin MFS_1 PF07690.11 gi|529079172|ref|YP_008378175.1| - 2.5e-35 121.8 52.4 5.7e-23 81.1 13.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily OATP PF03137.15 gi|529079172|ref|YP_008378175.1| - 0.0001 20.5 0.2 0.003 15.6 0.0 2.2 2 0 0 2 2 2 2 Organic Anion Transporter Polypeptide (OATP) family AsnC_trans_reg PF01037.16 gi|529079174|ref|YP_008378177.1| - 3.2e-14 52.3 0.6 5.4e-14 51.6 0.1 1.6 2 0 0 2 2 2 1 AsnC family HTH_AsnC-type PF13404.1 gi|529079174|ref|YP_008378177.1| - 2.2e-06 27.0 0.9 3.1e-05 23.4 0.3 2.3 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|529079174|ref|YP_008378177.1| - 0.00027 20.2 0.1 0.0022 17.3 0.1 2.3 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|529079174|ref|YP_008378177.1| - 0.0064 16.2 1.4 0.055 13.2 0.4 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain FeoC PF09012.5 gi|529079174|ref|YP_008378177.1| - 0.0069 16.0 0.0 0.012 15.2 0.0 1.3 1 0 0 1 1 1 1 FeoC like transcriptional regulator HTH_31 PF13560.1 gi|529079174|ref|YP_008378177.1| - 0.037 14.2 0.6 0.065 13.4 0.3 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|529079174|ref|YP_008378177.1| - 0.047 13.3 0.2 0.097 12.3 0.2 1.6 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.1 gi|529079174|ref|YP_008378177.1| - 0.066 13.5 0.0 0.9 9.9 0.1 2.4 2 1 0 2 2 2 0 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|529079174|ref|YP_008378177.1| - 0.084 12.5 0.1 0.17 11.5 0.0 1.5 1 0 0 1 1 1 0 HTH domain Aminotran_1_2 PF00155.16 gi|529079175|ref|YP_008378178.1| - 7.3e-65 219.2 0.0 8.2e-65 219.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|529079175|ref|YP_008378178.1| - 7.5e-08 31.8 0.0 1.1e-07 31.2 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase OKR_DC_1 PF01276.15 gi|529079175|ref|YP_008378178.1| - 0.0094 14.5 0.0 0.012 14.1 0.0 1.2 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain Aminotran_5 PF00266.14 gi|529079175|ref|YP_008378178.1| - 0.08 11.6 0.0 0.14 10.8 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class-V T2SE PF00437.15 gi|529079176|ref|YP_008378179.1| - 4.9e-45 153.5 0.0 8e-45 152.8 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|529079176|ref|YP_008378179.1| - 2.4e-05 23.7 0.1 5.5e-05 22.6 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain FtsK_SpoIIIE PF01580.13 gi|529079176|ref|YP_008378179.1| - 0.12 11.7 0.0 0.37 10.2 0.0 1.7 2 0 0 2 2 2 0 FtsK/SpoIIIE family T2SF PF00482.18 gi|529079177|ref|YP_008378180.1| - 4.9e-28 97.5 6.3 1.2e-16 60.7 0.7 3.3 4 0 0 4 4 4 2 Type II secretion system (T2SS), protein F DUF1628 PF07790.6 gi|529079178|ref|YP_008378181.1| - 0.28 11.9 5.2 6.9 7.5 2.5 3.0 2 1 0 3 3 3 0 Protein of unknown function (DUF1628) TarH PF02203.10 gi|529079179|ref|YP_008378182.1| - 0.089 12.6 0.6 0.12 12.2 0.4 1.1 1 0 0 1 1 1 0 Tar ligand binding domain homologue Ketoacyl-synt_C PF02801.17 gi|529079180|ref|YP_008378183.1| - 0.0068 16.2 0.0 0.016 15.0 0.0 1.6 1 0 0 1 1 1 1 Beta-ketoacyl synthase, C-terminal domain Lipoprotein_16 PF03923.8 gi|529079181|ref|YP_008378184.1| - 0.028 13.7 0.0 0.047 13.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized lipoprotein CARDB PF07705.6 gi|529079183|ref|YP_008378186.1| - 1.6e-19 69.8 50.2 1.9e-05 24.6 1.8 9.3 5 2 5 10 10 10 6 CARDB Glug PF07581.7 gi|529079183|ref|YP_008378186.1| - 0.0032 17.5 20.4 3.3 8.0 0.6 7.2 6 0 0 6 6 6 4 The GLUG motif GTP_EFTU PF00009.22 gi|529079184|ref|YP_008378187.1| - 1.4e-61 207.1 0.2 2.6e-61 206.3 0.2 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|529079184|ref|YP_008378187.1| - 1.1e-24 86.2 0.0 3.3e-24 84.7 0.0 1.8 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_C PF00679.19 gi|529079184|ref|YP_008378187.1| - 4.2e-23 81.0 0.1 4.8e-22 77.6 0.0 2.6 3 0 0 3 3 3 1 Elongation factor G C-terminus EFG_II PF14492.1 gi|529079184|ref|YP_008378187.1| - 2.5e-21 75.2 0.6 2.5e-21 75.2 0.4 1.9 2 0 0 2 2 2 1 Elongation Factor G, domain II GTP_EFTU_D2 PF03144.20 gi|529079184|ref|YP_008378187.1| - 7.9e-17 61.1 1.7 3.6e-16 59.0 1.2 2.3 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|529079184|ref|YP_008378187.1| - 1.5e-05 24.9 0.1 5.9e-05 22.9 0.0 2.0 2 0 0 2 2 2 1 50S ribosome-binding GTPase SRPRB PF09439.5 gi|529079184|ref|YP_008378187.1| - 0.079 12.1 0.1 0.25 10.5 0.1 1.8 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit Aldo_ket_red PF00248.16 gi|529079185|ref|YP_008378188.1| - 2.7e-74 249.5 0.0 3e-74 249.3 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Lipase_GDSL_2 PF13472.1 gi|529079185|ref|YP_008378188.1| - 0.11 12.6 0.1 1 9.4 0.0 2.3 2 1 0 2 2 2 0 GDSL-like Lipase/Acylhydrolase family UPF0058 PF01893.11 gi|529079187|ref|YP_008378190.1| - 3.4e-32 110.3 1.0 3.8e-32 110.2 0.7 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 Glu-tRNAGln PF02686.10 gi|529079187|ref|YP_008378190.1| - 0.11 12.3 0.5 0.17 11.7 0.4 1.6 1 1 0 1 1 1 0 Glu-tRNAGln amidotransferase C subunit ECH PF00378.15 gi|529079188|ref|YP_008378191.1| - 1.6e-39 135.4 0.0 1.8e-39 135.3 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family Peptidase_M17 PF00883.16 gi|529079188|ref|YP_008378191.1| - 0.098 11.5 1.7 0.14 11.0 1.2 1.2 1 0 0 1 1 1 0 Cytosol aminopeptidase family, catalytic domain FAD_binding_7 PF03441.9 gi|529079189|ref|YP_008378192.1| - 1.6e-100 335.8 1.7 2.1e-100 335.5 1.2 1.1 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.13 gi|529079189|ref|YP_008378192.1| - 3.4e-48 163.5 0.3 1.3e-47 161.5 0.0 1.9 2 0 0 2 2 2 1 DNA photolyase DUF3813 PF12758.2 gi|529079189|ref|YP_008378192.1| - 0.034 14.2 0.2 0.065 13.3 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3813) Sod_Fe_C PF02777.13 gi|529079190|ref|YP_008378193.1| - 6.9e-37 125.5 0.2 1.1e-36 124.8 0.1 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.17 gi|529079190|ref|YP_008378193.1| - 3.6e-31 107.2 1.3 7.1e-31 106.3 0.9 1.5 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain Lactamase_B PF00753.22 gi|529079193|ref|YP_008378196.1| - 9.6e-30 103.6 10.0 1.1e-29 103.4 6.9 1.0 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|529079193|ref|YP_008378196.1| - 2.4e-05 23.9 1.6 3.4e-05 23.4 1.1 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|529079193|ref|YP_008378196.1| - 0.0018 18.0 1.8 0.0035 17.0 1.2 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Phage_Coat_B PF05356.6 gi|529079193|ref|YP_008378196.1| - 0.015 14.9 0.1 0.024 14.3 0.1 1.3 1 0 0 1 1 1 0 Phage Coat protein B HalX PF08663.5 gi|529079194|ref|YP_008378197.1| - 3.7e-23 81.2 10.8 9e-23 80.0 7.5 1.7 1 0 0 1 1 1 1 HalX domain Response_reg PF00072.19 gi|529079194|ref|YP_008378197.1| - 1.3e-19 70.1 0.2 2.7e-19 69.1 0.1 1.5 1 0 0 1 1 1 1 Response regulator receiver domain DUF848 PF05852.6 gi|529079194|ref|YP_008378197.1| - 0.074 12.8 2.0 0.12 12.1 1.4 1.3 1 0 0 1 1 1 0 Gammaherpesvirus protein of unknown function (DUF848) DUF1241 PF06840.6 gi|529079194|ref|YP_008378197.1| - 0.087 12.0 0.6 0.22 10.7 0.2 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1241) DUF3364 PF11844.3 gi|529079194|ref|YP_008378197.1| - 0.13 12.3 1.3 1.6 8.8 0.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3364) KaiC PF06745.8 gi|529079195|ref|YP_008378198.1| - 6e-05 22.2 0.4 0.00045 19.4 0.3 1.9 1 1 0 1 1 1 1 KaiC AAA_19 PF13245.1 gi|529079195|ref|YP_008378198.1| - 0.03 14.0 0.1 0.061 13.0 0.1 1.5 1 0 0 1 1 1 0 Part of AAA domain PAXNEB PF05625.6 gi|529079195|ref|YP_008378198.1| - 0.097 11.4 0.0 0.14 10.9 0.0 1.2 1 0 0 1 1 1 0 PAXNEB protein MMPL PF03176.10 gi|529079196|ref|YP_008378199.1| - 3.8e-14 52.1 8.1 5.1e-14 51.7 5.6 1.2 1 0 0 1 1 1 1 MMPL family Patched PF02460.13 gi|529079196|ref|YP_008378199.1| - 2.8e-08 32.2 2.6 3.2e-08 32.0 1.8 1.1 1 0 0 1 1 1 1 Patched family ACR_tran PF00873.14 gi|529079196|ref|YP_008378199.1| - 0.00015 19.3 1.9 0.00015 19.3 1.3 1.2 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family Sterol-sensing PF12349.3 gi|529079196|ref|YP_008378199.1| - 0.85 9.0 8.5 0.036 13.5 2.1 1.5 2 0 0 2 2 2 0 Sterol-sensing domain of SREBP cleavage-activation Tim54 PF11711.3 gi|529079197|ref|YP_008378200.1| - 0.0027 16.3 0.5 0.0037 15.9 0.3 1.2 1 0 0 1 1 1 1 Inner membrane protein import complex subunit Tim54 GvpK PF05121.7 gi|529079197|ref|YP_008378200.1| - 0.017 14.9 2.5 0.059 13.1 0.1 2.2 2 1 0 2 2 2 0 Gas vesicle protein K Nexin_C PF08628.7 gi|529079197|ref|YP_008378200.1| - 0.024 14.7 0.3 0.034 14.2 0.2 1.3 1 0 0 1 1 1 0 Sorting nexin C terminal DUF3153 PF11353.3 gi|529079197|ref|YP_008378200.1| - 0.13 11.7 0.8 0.19 11.1 0.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3153) FUSC PF04632.7 gi|529079197|ref|YP_008378200.1| - 1 7.7 3.2 1.1 7.6 2.2 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family Thy1 PF02511.10 gi|529079198|ref|YP_008378201.1| - 9.2e-56 188.2 0.0 1.1e-55 187.9 0.0 1.1 1 0 0 1 1 1 1 Thymidylate synthase complementing protein MreB_Mbl PF06723.8 gi|529079199|ref|YP_008378202.1| - 1e-05 24.3 0.1 4.1e-05 22.3 0.1 1.5 1 1 0 1 1 1 1 MreB/Mbl protein DNA_gyraseB PF00204.20 gi|529079199|ref|YP_008378202.1| - 0.038 13.2 0.1 0.061 12.5 0.1 1.3 1 0 0 1 1 1 0 DNA gyrase B Mrr_cat PF04471.7 gi|529079201|ref|YP_008378204.1| - 2.6e-08 33.6 0.0 5.3e-08 32.6 0.0 1.5 1 0 0 1 1 1 1 Restriction endonuclease bPH_3 PF14470.1 gi|529079201|ref|YP_008378204.1| - 0.014 15.6 0.0 0.022 15.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial PH domain MIT PF04212.13 gi|529079201|ref|YP_008378204.1| - 0.061 13.2 0.4 0.061 13.2 0.3 3.2 3 0 0 3 3 3 0 MIT (microtubule interacting and transport) domain DUF2095 PF09868.4 gi|529079201|ref|YP_008378204.1| - 0.073 12.8 0.2 0.17 11.6 0.1 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2095) Ferritin PF00210.19 gi|529079201|ref|YP_008378204.1| - 0.093 12.4 1.4 0.42 10.3 0.2 2.1 2 0 0 2 2 2 0 Ferritin-like domain DUF2564 PF10819.3 gi|529079201|ref|YP_008378204.1| - 0.42 10.7 13.9 3.9 7.6 0.2 3.7 2 1 1 3 3 3 0 Protein of unknown function (DUF2564) TPR_1 PF00515.23 gi|529079201|ref|YP_008378204.1| - 3.9 7.2 6.6 1.3 8.7 0.4 3.1 3 0 0 3 3 3 0 Tetratricopeptide repeat DNA_binding_1 PF01035.15 gi|529079202|ref|YP_008378205.1| - 4.5e-09 35.9 0.0 6.4e-09 35.4 0.0 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain DUF4424 PF14415.1 gi|529079202|ref|YP_008378205.1| - 0.15 11.5 0.0 0.18 11.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4424) Yip1 PF04893.12 gi|529079203|ref|YP_008378206.1| - 0.0045 16.5 2.3 0.0055 16.2 1.6 1.0 1 0 0 1 1 1 1 Yip1 domain DUF2189 PF09955.4 gi|529079203|ref|YP_008378206.1| - 0.054 13.4 3.3 0.075 12.9 2.3 1.2 1 0 0 1 1 1 0 Predicted integral membrane protein (DUF2189) PepSY_TM_3 PF13706.1 gi|529079203|ref|YP_008378206.1| - 1 8.8 4.5 13 5.2 0.2 2.3 2 0 0 2 2 2 0 PepSY-associated TM helix DUF1049 PF06305.6 gi|529079203|ref|YP_008378206.1| - 2.3 7.7 10.4 0.66 9.4 1.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) DUF485 PF04341.7 gi|529079203|ref|YP_008378206.1| - 2.5 7.8 6.9 1.1 9.0 1.6 2.0 1 1 0 2 2 2 0 Protein of unknown function, DUF485 FeoB_C PF07664.7 gi|529079203|ref|YP_008378206.1| - 4.1 6.9 5.8 0.66 9.4 0.3 2.1 2 0 0 2 2 2 0 Ferrous iron transport protein B C terminus